BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046220
(774 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 528 bits (1361), Expect = e-150, Method: Compositional matrix adjust.
Identities = 303/660 (45%), Positives = 399/660 (60%), Gaps = 21/660 (3%)
Query: 112 TTHTPKFVGLKKHAGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEV 171
TTHT F+ L +GLWPA+G G DVIV V+DSG+WPES SF+DDGMP +P+RW+G C+
Sbjct: 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKP 60
Query: 172 GVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQN 231
G +FNAS CNRKLIGA FNKG+ ++ T + S RD GHGTH +S AG+ +
Sbjct: 61 GTQFNASMCNRKLIGANYFNKGILANDPTVNITMN--SARDTDGHGTHCASITAGNFAKG 118
Query: 232 ANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGF 291
++FGYA GTA GVAP AR+A+YK +F T + D++A MDQA+ADGVD++S+S G+
Sbjct: 119 VSHFGYAPGTARGVAPRARLAVYKFSFNEGTFTS---DLIAAMDQAVADGVDMISISYGY 175
Query: 292 PETTFDENPIAIGAFAALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFAAR 351
E+ I+I +F A+ KG+ V+ SAGN GP S+ NG+PWI V +G DR FA
Sbjct: 176 RFIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGT 235
Query: 352 VTLGNEELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDY 411
+TLGN L + G S++P FV P+ + N++ C + + D
Sbjct: 236 LTLGNG-LKIRGWSLFPARAFVRDSPVIY---NKTLSDCSSEELLSQVENPENTIVICDD 291
Query: 412 KGNITVSQQLEEVRRTRAAGAIISADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADN 471
G+ S Q+ + R R AI ++ F P V VN G+ V Y+ N+
Sbjct: 292 NGDF--SDQMRIITRARLKAAIFISEDPGVFRSATFPNPGVVVNKKEGKQVINYVKNSVT 349
Query: 472 ATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATI 531
T +I FQ T L TKP+P VA S+RGPS I KPDILAPGV IL A+ PN +I
Sbjct: 350 PTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPPNVFATSI 409
Query: 532 RDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMI 591
L T+Y LESGTSM+ PHAAGIA +LKA H EWS +AIRSAMMTTAD LDN I
Sbjct: 410 GTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPI 469
Query: 592 ADISTGVAGTPLDFGAGHINPNKAMDPGLVYDIEVQDYINYLCALNYTSQQIRVLTGTS- 650
D A TPLD GAGH++PN+A+DPGLVYD QDY+N LC+LN+T +Q + + +S
Sbjct: 470 KDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSSA 529
Query: 651 NFTCEHGNLDLNYPSFII---ILNNTNTASFTFKRVLTNVAVTRSVYTAVVKAPAGMTVA 707
+ C + + DLNYPSFI I N FKR +TNV + Y A +KAP T++
Sbjct: 530 SHNCSNPSADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTIS 589
Query: 708 VQPVTLSFDEKHSKAEFNLTVNINLGNDVSPKRNYLGNFGYLTWFEVNGKHQVRSPIVSA 767
V P L F K+ K + LT+ +G++ + N G +TW E NG H VRSPIV++
Sbjct: 590 VSPQILVFKNKNEKQSYTLTIRY-IGDEGQSR-----NVGSITWVEQNGNHSVRSPIVTS 643
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 391 bits (1005), Expect = e-109, Method: Compositional matrix adjust.
Identities = 244/642 (38%), Positives = 358/642 (55%), Gaps = 60/642 (9%)
Query: 135 SDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGL 194
S+++VGV+D+G+WPESPSF D+G P P +W+G CE F CNRK+IGARS++ G
Sbjct: 22 SNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSNNF---RCNRKIIGARSYHIG- 77
Query: 195 KQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMY 254
+ + D + PRD GHGTHT+ST AG V AN +G GTA G P+ARIA Y
Sbjct: 78 -----RPISPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAY 132
Query: 255 KIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLG--FPETTFDENPIAIGAFAALKKG 312
K+ +ND + D+LA D AIADGVD++SLS+G P F + IAIG+F A+++G
Sbjct: 133 KVC-WND--GCSDTDILAAYDDAIADGVDIISLSVGGANPRHYF-VDAIAIGSFHAVERG 188
Query: 313 IFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFAARVTLGNEE------LSVIGKSV 366
I + SAGN GP ++ + +PW+ +V A T+DR+F +V +GN + ++
Sbjct: 189 ILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQGVSINTFDNQY 248
Query: 367 YPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRR 426
YP L R+ G+ + C S +P + GK + C + G + L+
Sbjct: 249 YP--LVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEASF-GPHEFFKSLDG--- 302
Query: 427 TRAAGAIISADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTK 486
AAG ++++++R + + +P ++ N+ +YI + + +I TIL
Sbjct: 303 --AAGVLMTSNTRD--YADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTILNAS 358
Query: 487 PSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESG 546
+P V FSSRGP+ + ++KPDI PGV+IL AW P+ IR T + + SG
Sbjct: 359 -APVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSVAPVGGIRR----NTLFNIISG 413
Query: 547 TSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADISTGVAGTPLDFG 606
TSMSCPH GIAT +K + WS AAI+SA+MTTA ++ ++ A+ + +G
Sbjct: 414 TSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARFNPQAEFA---------YG 464
Query: 607 AGHINPNKAMDPGLVYDIEVQDYINYLCALNYTSQQIRVLTGTSNFTCEHGN----LDLN 662
+GH+NP KA+ PGLVYD DY+ +LC Y +Q +R +TG + C GN DLN
Sbjct: 465 SGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYS-ACTSGNTGRVWDLN 523
Query: 663 YPSFIIILNNTNTASFTFKRVLTNVAVTRSVYTAVVKAPAGMTVAVQPVTLSFDEKHSKA 722
YPSF + ++ + T + F R LT+VA S Y A++ AP G+T++V P LSF+ +
Sbjct: 524 YPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRK 583
Query: 723 EFNLTVNINLGNDVSPKRNYLGNFGYLTWFEVNGKHQVRSPI 764
F LTV ++ V L W + G H VRSPI
Sbjct: 584 SFTLTVRGSIKGFVVSAS--------LVWSD--GVHYVRSPI 615
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 109/436 (25%), Positives = 174/436 (39%), Gaps = 84/436 (19%)
Query: 216 HGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMD 275
HGTH S ++G+ EG P A++ + ++ N D
Sbjct: 97 HGTHVSGILSGNAPSETKEPYRLEG----AMPEAQLLLMRVEIVN-----GLADYARNYA 147
Query: 276 QAIADGVD----VMSLSLGFPETTF----DENPIAIGAFAALKKGIFVACSAGNS----G 323
QAI D V+ V+++S G + DE A A KG+ + SAGN G
Sbjct: 148 QAIRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDY--AKSKGVSIVTSAGNDSSFGG 205
Query: 324 PRPYSIEN-----------GAPWITTVGAGTVDREFAARVTLGNEELSVIGKSVYPENLF 372
+ + A TV + + D++ T+ ++ V N F
Sbjct: 206 KTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATVKTDDHQAKEMPVLSTNRF 265
Query: 373 VSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGA 432
+ + Y NR + D + V GK A +G+I ++ ++ A G
Sbjct: 266 EPNKAYDYAYANRGMK-----EDDFKDVKGK---IALIERGDIDFKDKIANAKKAGAVGV 317
Query: 433 IISADSRQNLFPGDF----DMPFVTVNLNNGELVKKYIINADNATVSIKFQIT--ILGTK 486
+I D++ FP + MP ++ +G L+K DN+ +I F T +L T
Sbjct: 318 LI-YDNQDKGFPIELPNVDQMPAAFISRKDGLLLK------DNSKKTITFNATPKVLPTA 370
Query: 487 PSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESG 546
++++FSS G L + +KPDI APG DIL + N+ YA SG
Sbjct: 371 SDTKLSRFSSWG--LTADGNIKPDIAAPGQDILSSVANNK--------------YAKLSG 414
Query: 547 TSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADISTGVAG------ 600
TSMS P AGI LL+ + + MT ++ LD A ++ +T +
Sbjct: 415 TSMSAPLVAGIMGLLQKQYE------TQYPDMTPSERLDLAKKVLMSSATALYDEDEKAY 468
Query: 601 -TPLDFGAGHINPNKA 615
+P GAG ++ KA
Sbjct: 469 FSPRQQGAGAVDAKKA 484
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 74/137 (54%), Gaps = 20/137 (14%)
Query: 480 ITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLT 539
IT+ + FSSRGP+ + LKP+++APG I+ A A+ +G+ +
Sbjct: 298 ITVGAVDKYDVITDFSSRGPTADNR--LKPEVVAPGNWIIAA------RASGTSMGQPIN 349
Query: 540 EYALES-GTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADISTGV 598
+Y + GT+M+ PH AGIA LL H W+ +++A++ TAD++ D IADI+
Sbjct: 350 DYYTAAPGTAMATPHVAGIAALLLQAHPSWTPDKVKTALIETADIVKP--DEIADIA--- 404
Query: 599 AGTPLDFGAGHINPNKA 615
+GAG +N KA
Sbjct: 405 ------YGAGRVNAYKA 415
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 76/152 (50%), Gaps = 18/152 (11%)
Query: 209 SPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAV 268
+P D GHGTH +S AG+ + G G+AP A++ K+ N +
Sbjct: 173 TPYDDNGHGTHVASIAAGTGAA-------SNGKYKGMAPGAKLVGIKV--LNGQGSGSIS 223
Query: 269 DVLAGMDQAIAD----GVDVMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGP 324
D++ G+D A+ + G+ V++LSLG +++ + ++ A G+ V +AGNSGP
Sbjct: 224 DIINGVDWAVQNKDKYGIKVINLSLGSSQSSDGTDSLSQAVNNAWDAGLVVVVAAGNSGP 283
Query: 325 RPYSIENGAPWITTVGAGTVDR-----EFAAR 351
Y++ + A + G VD+ +F++R
Sbjct: 284 NKYTVGSPAAASKVITVGAVDKYDVITDFSSR 315
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 124/526 (23%), Positives = 195/526 (37%), Gaps = 96/526 (18%)
Query: 127 LWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIG 186
L AG G+ +V VID+G E WR + + +
Sbjct: 9 LQEKAGKGAGTVVAVIDAG------------FDKNHEAWRLTDKTKARYQSKE------- 49
Query: 187 ARSFNKGLKQYGL--------KISTTFDYDSPRDFF---GHGTHTSSTIAGSRVQNANYF 235
K K++G+ K++ DY HGTH S ++G+
Sbjct: 50 --DLEKAKKEHGITYGEWVNDKVAYYHDYSKDGKTAVDQEHGTHVSGILSGNAPSETKEP 107
Query: 236 GYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPETT 295
EG P A++ + ++ N L A + + AI G V++ S G
Sbjct: 108 YRLEG----AXPEAQLLLXRVEIVN-GLADYARNYAQAIRDAINLGAKVINXSFGNAALA 162
Query: 296 F----DENPIAIGAFAALKKGIFVACSAGNSG--------PRPYSIENG-------APWI 336
+ DE A A KG+ + SAGN P + G A
Sbjct: 163 YANLPDETKKAFDY--AKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADST 220
Query: 337 TTVGAGTVDREFAARVTLGNEELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTD 396
TV + + D++ V + + V N F + + Y NR + D
Sbjct: 221 LTVASYSPDKQLTETVRVKTADQQDKEXPVLSTNRFEPNKAYDYAYANRGTK-----EDD 275
Query: 397 PRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLFPGDF----DMPFV 452
+ V GK A +G+I ++ + ++ A G +I D++ FP + P
Sbjct: 276 FKDVKGK---IALIERGDIDFKDKIAKAKKAGAVGVLI-YDNQDKGFPIELPNVDQXPAA 331
Query: 453 TVNLNNGELVKKYIINADNATVSIKFQIT--ILGTKPSPQVAKFSSRGPSLRSPWILKPD 510
++ +G L+K DN +I F T +L T ++++FSS G L + +KPD
Sbjct: 332 FISRKDGLLLK------DNPQKTITFNATPKVLPTASGTKLSRFSSWG--LTADGNIKPD 383
Query: 511 ILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSS 570
I APG DIL + N+ YA SGTS S P AGI LL+ +
Sbjct: 384 IAAPGQDILSSVANNK--------------YAKLSGTSXSAPLVAGIXGLLQKQYETQYP 429
Query: 571 AAIRSAMMTTA-DVLDNAYDMIADISTGVAGTPLDFGAGHINPNKA 615
S + A VL ++ + D +P GAG ++ KA
Sbjct: 430 DXTPSERLDLAKKVLXSSATALYDEDEKAYFSPRQQGAGAVDAKKA 475
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 106/224 (47%), Gaps = 39/224 (17%)
Query: 163 ERWRGA-CEVGV---EFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPRDFFGHGT 218
+ ++GA +VG+ +SH + K++G SF G Y++ D GHGT
Sbjct: 19 QGYKGANVKVGIIDTGIASSHTDLKVVGGASFVSG-----------ESYNT--DGNGHGT 65
Query: 219 HTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAI 278
H + T+A N G +GVAP +++Y I N + + +++G++ A
Sbjct: 66 HVAGTVAALD----NTTG-----VLGVAP--NVSLYAIKVLNSSGSGSYSAIVSGIEWAT 114
Query: 279 ADGVDVMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGPRPYSIENGAPW--- 335
+G+DV+++SLG P + A+A+ GI V +AGNSG G P
Sbjct: 115 QNGLDVINMSLGGPSGSTALKQAVDKAYAS---GIVVVAAAGNSGNSGSQNTIGYPAKYD 171
Query: 336 -ITTVGAGTVDREFAARVTLGNE-ELSVIGKSV---YPENLFVS 374
+ VGA ++ A+ ++G+E E+ G SV YP N + S
Sbjct: 172 SVIAVGAVDSNKNRASFSSVGSELEVMAPGVSVYSTYPSNTYTS 215
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 22/97 (22%)
Query: 492 AKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSC 551
A FSS G L +++APGV + + N Y +GTSM+
Sbjct: 186 ASFSSVGSEL--------EVMAPGVSVYSTYPSNT--------------YTSLNGTSMAS 223
Query: 552 PHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAY 588
PH AG A L+ + + S++ +R+ + +TA L +++
Sbjct: 224 PHVAGAAALILSKYPTLSASQVRNRLSSTATNLGDSF 260
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 51/109 (46%), Gaps = 22/109 (20%)
Query: 480 ITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLT 539
I + S Q A FSS GP L D++APGV I N+
Sbjct: 166 IAVGAVDSSNQRASFSSVGPEL--------DVMAPGVSICSTLPGNK------------- 204
Query: 540 EYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAY 588
Y +SGTSM+ PH AG A L+ + H W++ +RS++ T L N++
Sbjct: 205 -YGAKSGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGNSF 252
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 230 QNANYFG-YAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLS 288
Q+ N G + GT + VAP A + K+ + + + + + + G++ AIA+ +DV+++S
Sbjct: 59 QDNNSHGTHVAGTVLAVAPSASLYAVKVLGADGSGQYSWI--INGIEWAIANNMDVINMS 116
Query: 289 LGFPE 293
LG P
Sbjct: 117 LGGPS 121
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 22/109 (20%)
Query: 480 ITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLT 539
I + S Q A FSS GP L D++APGV I N+
Sbjct: 175 IAVGAVDSSNQRASFSSVGPEL--------DVMAPGVSICSTLPGNK------------- 213
Query: 540 EYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAY 588
Y +SGTSM+ PH AG A L+ + H W++ +RS++ T L +++
Sbjct: 214 -YGAKSGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSF 261
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 67/160 (41%), Gaps = 52/160 (32%)
Query: 134 GSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKG 193
GS+V V VIDSG+ ++SH + K+ G SF
Sbjct: 23 GSNVKVAVIDSGI-----------------------------DSSHPDLKVAGGASF--- 50
Query: 194 LKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAM 253
+ + +D HGTH + T+A N G +GVAP A +
Sbjct: 51 ---------VPSETNPFQDNNSHGTHVAGTVAALD----NSIGV-----LGVAPSASLYA 92
Query: 254 YKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPE 293
K+ + + + + + + G++ AIA+ +DV+++SLG P
Sbjct: 93 VKVLGADGSGQYSWI--INGIEWAIANNMDVINMSLGGPS 130
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 22/109 (20%)
Query: 480 ITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLT 539
I + S Q A FSS GP L D++APGV I N+
Sbjct: 166 IAVGAVDSSNQRASFSSVGPEL--------DVMAPGVSICSTLPGNK------------- 204
Query: 540 EYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAY 588
Y +SGTSM+ PH AG A L+ + H W++ +RS++ T L +++
Sbjct: 205 -YGAKSGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSF 252
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 230 QNANYFG-YAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLS 288
Q+ N G + GT + VAP A + K+ + + + + + + G++ AIA+ +DV+++S
Sbjct: 59 QDNNSHGTHVAGTVLAVAPSASLYAVKVLGADGSGQYSWI--INGIEWAIANNMDVINMS 116
Query: 289 LGFPE 293
LG P
Sbjct: 117 LGGPS 121
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 22/109 (20%)
Query: 480 ITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLT 539
I + S Q A FSS GP L D++APGV I N+
Sbjct: 175 IAVGAVDSSNQRASFSSVGPEL--------DVMAPGVSICSTLPGNK------------- 213
Query: 540 EYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAY 588
Y +SGTSM+ PH AG A L+ + H W++ +RS++ T L +++
Sbjct: 214 -YGAKSGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSF 261
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 67/160 (41%), Gaps = 52/160 (32%)
Query: 134 GSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKG 193
GS+V V VIDSG+ ++SH + K+ G SF
Sbjct: 23 GSNVKVAVIDSGI-----------------------------DSSHPDLKVAGGASF--- 50
Query: 194 LKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAM 253
+ + +D HGTH + T+A N G +GVAP A +
Sbjct: 51 ---------VPSETNPFQDNNSHGTHVAGTVAALN----NSIG-----VLGVAPCASLYA 92
Query: 254 YKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPE 293
K+ + + + + + + G++ AIA+ +DV+++SLG P
Sbjct: 93 VKVLGADGSGQYSWI--INGIEWAIANNMDVINMSLGGPS 130
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 22/109 (20%)
Query: 480 ITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLT 539
I + S Q A FSS GP L D++APGV I+ N+
Sbjct: 166 IAVGAVDSSNQRASFSSVGPEL--------DVMAPGVSIVSTLPGNK------------- 204
Query: 540 EYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAY 588
Y +SGT+M+ PH AG A L+ + H W++ +RS++ T L +++
Sbjct: 205 -YGAKSGTAMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSF 252
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 230 QNANYFG-YAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLS 288
Q+ N G + GT + VAP A + K+ + + + + + + G++ AIA+ +DV+++S
Sbjct: 59 QDNNSHGTHVAGTVLAVAPSASLYAVKVLGADGSGQYSWI--INGIEWAIANNMDVINMS 116
Query: 289 LGFPE 293
LG P
Sbjct: 117 LGGPS 121
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 22/109 (20%)
Query: 480 ITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLT 539
I + S Q A FSS GP L D++APGV I+ N+
Sbjct: 166 IAVGAVDSSNQRASFSSVGPEL--------DVMAPGVSIVSTLPGNK------------- 204
Query: 540 EYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAY 588
Y +SGT+M+ PH AG A L+ + H W++ +RS++ T L +++
Sbjct: 205 -YGAKSGTAMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSF 252
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 230 QNANYFG-YAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLS 288
Q+ N G + GT + VAP A + K+ + + + + + + G++ AIA+ +DV+++S
Sbjct: 59 QDNNSHGTHVAGTVLAVAPSASLYAVKVLGADGSGQYSWI--INGIEWAIANNMDVINMS 116
Query: 289 LGFPE 293
LG P
Sbjct: 117 LGGPS 121
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 22/109 (20%)
Query: 480 ITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLT 539
I + S Q A FSS GP L D++APGV I N+
Sbjct: 175 IAVGAVDSSNQRASFSSVGPEL--------DVMAPGVSIQSTLPGNK------------- 213
Query: 540 EYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAY 588
Y +SGTSM+ PH AG A L+ + H W++ +RS++ T L +++
Sbjct: 214 -YGAKSGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSF 261
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 67/160 (41%), Gaps = 52/160 (32%)
Query: 134 GSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKG 193
GS+V V VIDSG+ ++SH + K+ G SF
Sbjct: 23 GSNVKVAVIDSGI-----------------------------DSSHPDLKVAGGASF--- 50
Query: 194 LKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAM 253
+ + +D HGTH + T+A N G +GVAP A +
Sbjct: 51 ---------VPSETNPFQDNNSHGTHVAGTVAALN----NSIG-----VLGVAPCASLYA 92
Query: 254 YKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPE 293
K+ + + + + + + G++ AIA+ +DV+++SLG P
Sbjct: 93 VKVLGADGSGQYSWI--INGIEWAIANNMDVINMSLGGPS 130
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 50/109 (45%), Gaps = 22/109 (20%)
Query: 480 ITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLT 539
I + S Q A FSS GP L D++APGV I N+
Sbjct: 175 IAVGAVDSSNQRASFSSVGPEL--------DVMAPGVSIXSTLPGNK------------- 213
Query: 540 EYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAY 588
Y SGTSM+ PH AG A L+ + H W++ +RS++ T L +++
Sbjct: 214 -YGAYSGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTYLGDSF 261
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 67/160 (41%), Gaps = 52/160 (32%)
Query: 134 GSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKG 193
GS+V V VIDSG+ ++SH + K+ G SF
Sbjct: 23 GSNVKVAVIDSGI-----------------------------DSSHPDLKVAGGASF--- 50
Query: 194 LKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAM 253
+ + +D HGTH + T+A N G +GVAP A +
Sbjct: 51 ---------VPSETNPFQDNNSHGTHVAGTVAALD----NSIG-----VLGVAPSASLYA 92
Query: 254 YKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPE 293
K+ + + + + + + G++ AIA+ +DV+++SLG P
Sbjct: 93 VKVLGADGSGQYSWI--INGIEWAIANNMDVINMSLGGPS 130
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 22/109 (20%)
Query: 480 ITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLT 539
I + S Q A FSS GP L D++APGV I N+
Sbjct: 166 IAVGAVDSSNQRASFSSVGPEL--------DVMAPGVSICSTLPGNK------------- 204
Query: 540 EYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAY 588
Y +SGT M+ PH AG A L+ + H W++ +RS++ T L +++
Sbjct: 205 -YGAKSGTXMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSF 252
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 230 QNANYFG-YAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLS 288
Q+ N G + GT + VAP A + K+ + + + + + + G++ AIA+ +DV+++S
Sbjct: 59 QDNNSHGTHVAGTVLAVAPSASLYAVKVLGADGSGQYSWI--INGIEWAIANNMDVINMS 116
Query: 289 LGFPE 293
LG P
Sbjct: 117 LGGPS 121
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 50/109 (45%), Gaps = 22/109 (20%)
Query: 480 ITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLT 539
I + S Q A FSS GP L D++APGV I N+
Sbjct: 175 IAVGAVDSSNQRASFSSVGPEL--------DVMAPGVSIXSTLPGNK------------- 213
Query: 540 EYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAY 588
Y SGTSM+ PH AG A L+ + H W++ +RS++ T L +++
Sbjct: 214 -YGAYSGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSF 261
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 67/160 (41%), Gaps = 52/160 (32%)
Query: 134 GSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKG 193
GS+V V VIDSG+ ++SH + K+ G SF
Sbjct: 23 GSNVKVAVIDSGI-----------------------------DSSHPDLKVAGGASF--- 50
Query: 194 LKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAM 253
+ + +D HGTH + T+A N G +GVAP A +
Sbjct: 51 ---------VPSETNPFQDNNSHGTHVAGTVAALD----NSIG-----VLGVAPSASLYA 92
Query: 254 YKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPE 293
K+ + + + + + + G++ AIA+ +DV+++SLG P
Sbjct: 93 VKVLGADGSGQYSWI--INGIEWAIANNMDVINMSLGGPS 130
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 22/109 (20%)
Query: 480 ITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLT 539
I + S Q A FSS GP L D++APGV I N+
Sbjct: 175 IAVGAVDSSNQRASFSSVGPEL--------DVMAPGVSIQSTLPGNK------------- 213
Query: 540 EYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAY 588
Y +SGT M+ PH AG A L+ + H W++ +RS++ T L +++
Sbjct: 214 -YGAKSGTXMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSF 261
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 67/160 (41%), Gaps = 52/160 (32%)
Query: 134 GSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKG 193
GS+V V VIDSG+ ++SH + K+ G SF
Sbjct: 23 GSNVKVAVIDSGI-----------------------------DSSHPDLKVAGGASF--- 50
Query: 194 LKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAM 253
+ + +D HGTH + T+A N G +GVAP A +
Sbjct: 51 ---------VPSETNPFQDNNSHGTHVAGTVAALN----NSIG-----VLGVAPSASLYA 92
Query: 254 YKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPE 293
K+ + + + + + + G++ AIA+ +DV+++SLG P
Sbjct: 93 VKVLGADGSGQYSWI--INGIEWAIANNMDVINMSLGGPS 130
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 22/109 (20%)
Query: 480 ITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLT 539
I + S Q A FSS GP L D++APGV I N+
Sbjct: 163 IAVGAVDSSNQRASFSSVGPEL--------DVMAPGVSIWSTLPGNK------------- 201
Query: 540 EYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAY 588
Y +SGT M+ PH AG A L+ + H W++ +RS++ T L +++
Sbjct: 202 -YGAKSGTXMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSF 249
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 230 QNANYFG-YAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLS 288
Q+ N G + GT + VAP A + K+ + + + + + + G++ AIA+ +DV+++S
Sbjct: 56 QDNNSHGTHVAGTVLAVAPSASLYAVKVLGADGSGQYSWI--INGIEWAIANNMDVINMS 113
Query: 289 LGFPE 293
LG P
Sbjct: 114 LGGPS 118
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 22/109 (20%)
Query: 480 ITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLT 539
I + S Q A FSS GP L D++APGV I N+
Sbjct: 175 IAVGAVDSSNQRASFSSVGPEL--------DVMAPGVSIQSTLPGNK------------- 213
Query: 540 EYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAY 588
Y +GTSM+ PH AG A L+ + H W++ +RS++ T L +++
Sbjct: 214 -YGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLQNTTTKLGDSF 261
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Query: 211 RDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDV 270
+D HGTH + T+A N G +GVAP A + K+ + + + + +
Sbjct: 59 QDNNSHGTHVAGTVAALN----NSIG-----VLGVAPSASLYAVKVLGADGSGQYSWI-- 107
Query: 271 LAGMDQAIADGVDVMSLSLGFPE 293
+ G++ AIA+ +DV+++SLG P
Sbjct: 108 INGIEWAIANNMDVINMSLGGPS 130
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 22/109 (20%)
Query: 480 ITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLT 539
I + S Q A FSS GP L D++APGV I N+
Sbjct: 175 IAVGAVDSSNQRASFSSVGPEL--------DVMAPGVSIQSTLPGNK------------- 213
Query: 540 EYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAY 588
Y +GTSM+ PH AG A L+ + H W++ +RS++ T L +++
Sbjct: 214 -YGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLQNTTTKLGDSF 261
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 11/83 (13%)
Query: 211 RDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDV 270
+D HGTH + T+A N G +GVAP + A+Y + D +
Sbjct: 59 QDDNSHGTHVAGTVAALN----NSIG-----VLGVAPSS--ALYAVKVLGDAGSGQYSWI 107
Query: 271 LAGMDQAIADGVDVMSLSLGFPE 293
+ G++ AIA+ +DV+++SLG P
Sbjct: 108 INGIEWAIANNMDVINMSLGGPS 130
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 22/109 (20%)
Query: 480 ITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLT 539
I + S Q A FSS GP L D++APGV I N+
Sbjct: 175 IAVGAVDSSNQRASFSSVGPEL--------DVMAPGVSIQSTLPGNK------------- 213
Query: 540 EYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAY 588
Y +GTSM+ PH AG A L+ + H W++ +RS++ T L +++
Sbjct: 214 -YGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSF 261
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Query: 211 RDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDV 270
+D HGTH + T+A N G +GVAP A + K+ + + + + +
Sbjct: 59 QDNNSHGTHVAGTVAALN----NSIG-----VLGVAPSASLYAVKVLGADGSGQYSWI-- 107
Query: 271 LAGMDQAIADGVDVMSLSLGFPE 293
+ G++ AIA+ +DV+++SLG P
Sbjct: 108 INGIEWAIANNMDVINMSLGGPS 130
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 22/109 (20%)
Query: 480 ITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLT 539
I + S Q A FSS GP L D++APGV I N+
Sbjct: 175 IAVGAVDSSNQRASFSSVGPEL--------DVMAPGVSIQSTLPGNK------------- 213
Query: 540 EYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAY 588
Y +GTSM+ PH AG A L+ + H W++ +RS++ T L +++
Sbjct: 214 -YGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSF 261
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Query: 211 RDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDV 270
+D HGTH + T+A N G +GVAP A + K+ + + + + +
Sbjct: 59 QDNNSHGTHVAGTVAALN----NSIG-----VLGVAPSASLYAVKVLGADGSGQYSWI-- 107
Query: 271 LAGMDQAIADGVDVMSLSLGFPE 293
+ G++ AIA+ +DV+++SLG P
Sbjct: 108 INGIEWAIANNMDVINMSLGGPS 130
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 22/109 (20%)
Query: 480 ITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLT 539
I + S Q A FSS GP L D++APGV I +P
Sbjct: 166 IAVGAVDSSNQRAPFSSVGPEL--------DVMAPGVSICST-LPGG------------- 203
Query: 540 EYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAY 588
+Y SGTSM+ PH AG A L+ + H W++ +RS++ TA L +++
Sbjct: 204 KYGALSGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTATKLGDSF 252
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 230 QNANYFG-YAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLS 288
Q+ N G + GT + VAP A + K+ + + +A+ + + G++ AIA+ +DV+++S
Sbjct: 59 QDNNSHGTHVAGTVLAVAPSASLYAVKVLGADGSGQASWI--INGIEWAIANNMDVINMS 116
Query: 289 LGFPE 293
LG P
Sbjct: 117 LGSPS 121
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 22/109 (20%)
Query: 480 ITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLT 539
I + S Q A FSS GP L D++APGV I N+
Sbjct: 175 IAVGAVDSSNQRASFSSVGPEL--------DVMAPGVSIQSTLPGNK------------- 213
Query: 540 EYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAY 588
Y +GTSM+ PH AG A L+ + H W++ +RS++ T L +++
Sbjct: 214 -YGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSF 261
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Query: 211 RDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDV 270
+D HGTH + T+A N G +GVAP A + K+ + + + + +
Sbjct: 59 QDNNSHGTHVAGTVAALN----NSIG-----VLGVAPSASLYAVKVLGADGSGQYSWI-- 107
Query: 271 LAGMDQAIADGVDVMSLSLGFPE 293
+ G++ AIA+ +DV+++SLG P
Sbjct: 108 INGIEWAIANNMDVINMSLGGPS 130
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 22/109 (20%)
Query: 480 ITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLT 539
I + S Q A FSS GP L D++APGV I N+
Sbjct: 175 IAVGAVDSSNQRASFSSVGPEL--------DVMAPGVSIQSTLPGNK------------- 213
Query: 540 EYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAY 588
Y SGT M+ PH AG A L+ + H W++ +RS++ T L +++
Sbjct: 214 -YGAYSGTXMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSF 261
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Query: 211 RDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDV 270
+D HGTH + T+A N G +GVAP A + K+ + + + + +
Sbjct: 59 QDNNSHGTHVAGTVAALN----NSIG-----VLGVAPSASLYAVKVLGADGSGQYSWI-- 107
Query: 271 LAGMDQAIADGVDVMSLSLGFPE 293
+ G++ AIA+ +DV+++SLG P
Sbjct: 108 INGIEWAIANNMDVINMSLGGPS 130
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 22/109 (20%)
Query: 480 ITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLT 539
I + S Q A FSS GP L D++APGV I N+
Sbjct: 175 IAVGAVDSSNQRASFSSVGPEL--------DVMAPGVSIQSTLPGNK------------- 213
Query: 540 EYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAY 588
Y SGT M+ PH AG A L+ + H W++ +RS++ T L +++
Sbjct: 214 -YGAYSGTXMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSF 261
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Query: 211 RDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDV 270
+D HGTH + T+A N G +GVAP A + K+ + + + + +
Sbjct: 59 QDNNSHGTHVAGTVAALN----NSIG-----VLGVAPCASLYAVKVLGADGSGQYSWI-- 107
Query: 271 LAGMDQAIADGVDVMSLSLGFPE 293
+ G++ AIA+ +DV+++SLG P
Sbjct: 108 INGIEWAIANNMDVINMSLGGPS 130
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 22/109 (20%)
Query: 480 ITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLT 539
I + S Q A FSS GP L D++APGV I +P
Sbjct: 166 IAVGAVDSSNQRAPFSSVGPEL--------DVMAPGVSICST-LPGG------------- 203
Query: 540 EYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAY 588
+Y SGT+M+ PH AG A L+ + H W++ +RS++ TA L +++
Sbjct: 204 KYGALSGTAMASPHVAGAAALILSKHPNWTNTQVRSSLENTATKLGDSF 252
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 230 QNANYFG-YAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLS 288
Q+ N G + GT + VAP A + K+ + + +A+ + + G++ AIA+ +DV+++S
Sbjct: 59 QDNNSHGTHVAGTVLAVAPSASLYAVKVLGADGSGQASWI--INGIEWAIANNMDVINMS 116
Query: 289 LGFPE 293
LG P
Sbjct: 117 LGSPS 121
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 22/109 (20%)
Query: 480 ITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLT 539
I + S Q A FSS GP L D++APGV I N+
Sbjct: 175 IAVGAVDSSNQRASFSSVGPEL--------DVMAPGVSIQSTLPGNK------------- 213
Query: 540 EYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAY 588
Y +GT M+ PH AG A L+ + H W++ +RS++ T L +++
Sbjct: 214 -YGAYNGTXMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSF 261
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Query: 211 RDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDV 270
+D HGTH + T+A N G +GVAP A + K+ + + + + +
Sbjct: 59 QDNNSHGTHVAGTVAALN----NSIG-----VLGVAPSASLYAVKVLGADGSGQYSWI-- 107
Query: 271 LAGMDQAIADGVDVMSLSLGFPE 293
+ G++ AIA+ +DV+++SLG P
Sbjct: 108 INGIEWAIANNMDVINMSLGGPS 130
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 22/109 (20%)
Query: 480 ITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLT 539
I + S Q A FSS GP L D++APGV I N+
Sbjct: 175 IAVGAVDSSNQRASFSSVGPEL--------DVMAPGVSIQSTLPGNK------------- 213
Query: 540 EYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAY 588
Y +GT M+ PH AG A L+ + H W++ +RS++ T L +++
Sbjct: 214 -YGAYNGTXMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSF 261
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Query: 211 RDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDV 270
+D HGTH + T+A N G +GVAP A + K+ + + + + +
Sbjct: 59 QDNNSHGTHVAGTVAALN----NSIG-----VLGVAPSASLYAVKVLGADGSGQYSWI-- 107
Query: 271 LAGMDQAIADGVDVMSLSLGFPE 293
+ G++ AIA+ +DV+++SLG P
Sbjct: 108 INGIEWAIANNMDVINMSLGGPS 130
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 22/109 (20%)
Query: 480 ITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLT 539
I + S Q A FSS GP L D++APGV I N+
Sbjct: 175 IAVGAVDSSNQRASFSSVGPEL--------DVMAPGVSIQSTLPGNK------------- 213
Query: 540 EYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAY 588
Y +GTS + PH AG A L+ + H W++ +RS++ T L +++
Sbjct: 214 -YGAYNGTSXASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSF 261
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 11/83 (13%)
Query: 211 RDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDV 270
+D HGTH + T+A N G +GVAP A + K+ + + + + +
Sbjct: 59 QDNNSHGTHVAGTVAALN----NSIG-----VLGVAPSASLYAVKVLGADGSGQYSWI-- 107
Query: 271 LAGMDQAIADGVDVMSLSLGFPE 293
+ G++ AIA+ DV++ SLG P
Sbjct: 108 INGIEWAIANNXDVINXSLGGPS 130
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 49/109 (44%), Gaps = 22/109 (20%)
Query: 480 ITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLT 539
I + S Q A FSS G L D++APGV I P T
Sbjct: 175 IAVGAVNSSNQRASFSSAGSEL--------DVMAPGVSIQ----STLPGGT--------- 213
Query: 540 EYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAY 588
Y +GT M+ PH AG A L+ + H W++A +R + +TA L N++
Sbjct: 214 -YGAYNGTCMATPHVAGAAALILSKHPTWTNAQVRDRLESTATYLGNSF 261
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 75/165 (45%), Gaps = 29/165 (17%)
Query: 211 RDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDV 270
+D HGTH + TIA N G +GV+P A ++Y + + T +
Sbjct: 59 QDGSSHGTHVAGTIAALN----NSIG-----VLGVSPSA--SLYAVKVLDSTGSGQYSWI 107
Query: 271 LAGMDQAIADGVDVMSLSLGFP------ETTFDENPIAIGAFAALKKGIFVACSAGNSGP 324
+ G++ AI++ +DV+++SLG P +T D+ A+ GI VA +AGN G
Sbjct: 108 INGIEWAISNNMDVINMSLGGPTGSTALKTVVDK---------AVSSGIVVAAAAGNEGS 158
Query: 325 RPYSIENGAP--WITTVGAGTVDREFA-ARVTLGNEELSVIGKSV 366
+ G P + +T+ G V+ A + EL V+ V
Sbjct: 159 SGSTSTVGYPAKYPSTIAVGAVNSSNQRASFSSAGSELDVMAPGV 203
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 49/109 (44%), Gaps = 22/109 (20%)
Query: 480 ITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLT 539
I + S Q A FSS G L D++APGV I P T
Sbjct: 175 IAVGAVNSSNQRASFSSVGSEL--------DVMAPGVSIQ----STLPGGT--------- 213
Query: 540 EYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAY 588
Y +GT M+ PH AG A L+ + H W++A +R + +TA L N++
Sbjct: 214 -YGAYNGTXMATPHVAGAAALILSKHPTWTNAQVRDRLESTATYLGNSF 261
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 76/157 (48%), Gaps = 30/157 (19%)
Query: 211 RDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDV 270
+D HGTH + TIA N G +GVAP A ++Y + + T +
Sbjct: 59 QDGSSHGTHVAGTIAALN----NSIG-----VLGVAPSA--SLYAVKVLDSTGSGQYSWI 107
Query: 271 LAGMDQAIADGVDVMSLSLGFP------ETTFDENPIAIGAFAALKKGIFVACSAGNSGP 324
+ G++ AI++ +DV+++SLG P +T D+ A+ GI VA +AGN G
Sbjct: 108 INGIEWAISNNMDVINMSLGGPTGSTALKTVVDK---------AVSSGIVVAAAAGNEGS 158
Query: 325 RPYSIENGAP--WITTVGAGTVD--REFAARVTLGNE 357
+ G P + +T+ G V+ + A+ ++G+E
Sbjct: 159 SGSTSTVGYPAKYPSTIAVGAVNSSNQRASFSSVGSE 195
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 47/95 (49%), Gaps = 22/95 (23%)
Query: 492 AKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSC 551
A FS G L DI+APGV++ + P +T YA +GTSM+
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNVQSTY----PGST----------YASLNGTSMAT 218
Query: 552 PHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDN 586
PH AG+A L+K + WS+ IR+ + TA L N
Sbjct: 219 PHVAGVAALVKQKNPSWSNVQIRNHLKNTATGLGN 253
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 68/156 (43%), Gaps = 37/156 (23%)
Query: 189 SFNKGLKQYGLK-------ISTTFDYD------------SPRDFFGHGTHTSSTIAGSRV 229
+ N+GL G+K IST D + S +D GHGTH + TIA
Sbjct: 16 AHNRGLTGSGVKVAVLDTGISTHPDLNIRGGASFVPGEPSTQDGNGHGTHVAGTIAALN- 74
Query: 230 QNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSL 289
N G +GVAP A +Y + + + + G++ A +G+ V +LSL
Sbjct: 75 ---NSIGV-----LGVAPSAE--LYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSL 124
Query: 290 G--FPETTFDENPIAIGAFAALKKGIFVACSAGNSG 323
G P T ++ +A +G+ V ++GNSG
Sbjct: 125 GSPSPSATLEQ-----AVNSATSRGVLVVAASGNSG 155
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 24/95 (25%)
Query: 490 QVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSM 549
++A FS+ G W+ D++APGVDI+ NR YA SGTSM
Sbjct: 190 RLASFSNYGT-----WV---DVVAPGVDIVSTITGNR--------------YAYMSGTSM 227
Query: 550 SCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVL 584
+ PH AG+A LL + ++ IR A+ TAD +
Sbjct: 228 ASPHVAGLAALLASQGR--NNIEIRQAIEQTADKI 260
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 63/146 (43%), Gaps = 26/146 (17%)
Query: 206 DYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKA 265
DYD P D HGTH + IA + N A G A G+AP RI + N +
Sbjct: 63 DYD-PMDLNNHGTHVAG-IAAAETNN------ATGIA-GMAPNTRILAVRALDRNGS--G 111
Query: 266 AAVDVLAGMDQAIADGVDVMSLSLGFP-ETTFDENPIAIGAFAALKKGIFVACSAGNSGP 324
D+ + A G +V++LSLG TT EN + A KG V +AGN+G
Sbjct: 112 TLSDIADAIIYAADSGAEVINLSLGCDCHTTTLENAVNY----AWNKGSVVVAAAGNNGS 167
Query: 325 ----RPYSIENGAPWITTVGAGTVDR 346
P S EN + G VD+
Sbjct: 168 STTFEPASYEN------VIAVGAVDQ 187
>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1V6C|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1WVM|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1WVM|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1Y9Z|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
pdb|1Y9Z|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
Length = 441
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 13/95 (13%)
Query: 499 PSLRSPWIL--KPDILAPGVDILGAWVPNRPIATIRDIGKLLT-------EYALESGTSM 549
P L++P+++ DI P V + A +A +G+ T +Y +GTSM
Sbjct: 315 PGLQNPFLVDANSDITVPSVSVDRA----TGLALKAKLGQSTTVSNQGNQDYEYYNGTSM 370
Query: 550 SCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVL 584
+ PH +G+ATL+ + H E S++ +R+A+ TAD L
Sbjct: 371 ATPHVSGVATLVWSYHPECSASQVRAALNATADDL 405
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 15/133 (11%)
Query: 198 GLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIA 257
G S T ++ P + HGTH + TIA EG +GV P ++ +
Sbjct: 47 GTNNSGTGNWYQPGNNNAHGTHVAGTIAA--------IANNEGV-VGVMPNQNANIHIVK 97
Query: 258 FYNDTLKAAAVDVLAGMDQAI-ADGVDVMSLSLGFP-ETTFDENPIAIGAFAALKKGIFV 315
+N+ + ++A +D + + G +V+++SLG TT + N + G+ +
Sbjct: 98 VFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSLGGSGSTTTERNALNT----HYNNGVLL 153
Query: 316 ACSAGNSGPRPYS 328
+AGN+G YS
Sbjct: 154 IAAAGNAGDSSYS 166
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 47/99 (47%), Gaps = 22/99 (22%)
Query: 490 QVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSM 549
Q A FSS G L D++APGV I P T Y +GTSM
Sbjct: 185 QRASFSSAGSEL--------DVMAPGVSIQ----STLPGGT----------YGAYNGTSM 222
Query: 550 SCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAY 588
+ PH AG A L+ + H W++A +R + +TA L +++
Sbjct: 223 ATPHVAGAAALILSKHPTWTNAQVRDRLESTATYLGSSF 261
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 28/143 (19%)
Query: 211 RDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDV 270
+D HGTH + TIA N G +GVAP A ++Y + + T +
Sbjct: 59 QDGSSHGTHVAGTIAALN----NSIG-----VLGVAPSA--SLYAVKVLDSTGSGQYSWI 107
Query: 271 LAGMDQAIADGVDVMSLSLGFP------ETTFDENPIAIGAFAALKKGIFVACSAGNSGP 324
+ G++ AI++ +DV+++SLG P +T D+ A+ GI VA +AGN G
Sbjct: 108 INGIEWAISNNMDVINMSLGGPTGSTALKTVVDK---------AVSSGIVVAAAAGNEGS 158
Query: 325 RPYSIENGAP--WITTVGAGTVD 345
+ G P + +T+ G V+
Sbjct: 159 SGSTSTVGYPAKYPSTIAVGAVN 181
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 68/156 (43%), Gaps = 37/156 (23%)
Query: 189 SFNKGLKQYGLK-------ISTTFDYD------------SPRDFFGHGTHTSSTIAGSRV 229
+ N+GL G+K IST D + S +D GHGTH + TIA
Sbjct: 16 AHNRGLTGSGVKVAVLDTGISTHPDLNIRGGASFVPGEPSTQDGNGHGTHVAGTIAALN- 74
Query: 230 QNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSL 289
N G +GVAP A +Y + + A + G++ A +G+ V +LSL
Sbjct: 75 ---NSIGV-----LGVAPSAE--LYAVKVLGADGRGAISSIAQGLEWAGNNGMHVANLSL 124
Query: 290 G--FPETTFDENPIAIGAFAALKKGIFVACSAGNSG 323
G P T ++ +A +G+ V ++GNSG
Sbjct: 125 GSPSPSATLEQ-----AVNSATSRGVLVVAASGNSG 155
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 45/93 (48%), Gaps = 22/93 (23%)
Query: 492 AKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSC 551
A FS G L DI+APGV++ + P +T YA +GTSM+
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNVQSTY----PGST----------YASLNGTSMAT 218
Query: 552 PHAAGIATLLKATHHEWSSAAIRSAMMTTADVL 584
PH AG A L+K + WS+ IR+ + TA L
Sbjct: 219 PHVAGAAALVKQKNPSWSNVQIRNHLKNTATSL 251
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 68/156 (43%), Gaps = 37/156 (23%)
Query: 189 SFNKGLKQYGLK-------ISTTFDYD------------SPRDFFGHGTHTSSTIAGSRV 229
+ N+GL G+K IST D + S +D GHGTH + TIA
Sbjct: 16 AHNRGLTGSGVKVAVLDTGISTHPDLNIRGGASFVPGEPSTQDGNGHGTHVAGTIAALD- 74
Query: 230 QNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSL 289
N G +GVAP A +Y + + A + G++ A +G+ V +LSL
Sbjct: 75 ---NSIGV-----LGVAPSAE--LYAVKVLGASGSGAISSIAQGLEWAGNNGMHVANLSL 124
Query: 290 G--FPETTFDENPIAIGAFAALKKGIFVACSAGNSG 323
G P T ++ +A +G+ V ++GNSG
Sbjct: 125 GSPSPSATLEQ-----AVNSATSRGVLVVAASGNSG 155
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 22/93 (23%)
Query: 492 AKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSC 551
A FS G L DI+APGV++ + P +T YA +GT M+
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNVQSTY----PGST----------YASLNGTXMAT 218
Query: 552 PHAAGIATLLKATHHEWSSAAIRSAMMTTADVL 584
PH AG A L+K + WS+ IR+ + TA L
Sbjct: 219 PHVAGAAALVKQKNPSWSNVQIRNHLKNTATSL 251
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 45/93 (48%), Gaps = 22/93 (23%)
Query: 492 AKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSC 551
A FS G L DI+APGV++ + P +T YA +GTSM+
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNVQSTY----PGST----------YASLNGTSMAT 218
Query: 552 PHAAGIATLLKATHHEWSSAAIRSAMMTTADVL 584
PH AG A L+K + WS+ IR+ + TA L
Sbjct: 219 PHVAGAAALVKQKNPSWSNVQIRNHLKNTATSL 251
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 68/156 (43%), Gaps = 37/156 (23%)
Query: 189 SFNKGLKQYGLK-------ISTTFDYD------------SPRDFFGHGTHTSSTIAGSRV 229
+ N+GL G+K IST D + S +D GHGTH + TIA
Sbjct: 16 AHNRGLTGSGVKVAVLDTGISTHPDLNIRGGASFVPGEPSTQDGNGHGTHVAGTIAALN- 74
Query: 230 QNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSL 289
N G +GVAP A +Y + + + + G++ A +G+ V +LSL
Sbjct: 75 ---NSIGV-----LGVAPNAE--LYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSL 124
Query: 290 G--FPETTFDENPIAIGAFAALKKGIFVACSAGNSG 323
G P T ++ +A +G+ V ++GNSG
Sbjct: 125 GSPSPSATLEQ-----AVNSATSRGVLVVAASGNSG 155
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 45/93 (48%), Gaps = 22/93 (23%)
Query: 492 AKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSC 551
A FS G L DI+APGV++ + P +T YA +GTSM+
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNVQSTY----PGST----------YASLNGTSMAT 218
Query: 552 PHAAGIATLLKATHHEWSSAAIRSAMMTTADVL 584
PH AG A L+K + WS+ IR+ + TA L
Sbjct: 219 PHVAGAAALVKQKNPSWSNVQIRNHLKNTATSL 251
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 68/156 (43%), Gaps = 37/156 (23%)
Query: 189 SFNKGLKQYGLK-------ISTTFDYD------------SPRDFFGHGTHTSSTIAGSRV 229
+ N+GL G+K IST D + S +D GHGTH + TIA
Sbjct: 16 AHNRGLTGSGVKVAVLDTGISTHPDLNIRGGASFVPGEPSTQDGNGHGTHVAGTIAALN- 74
Query: 230 QNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSL 289
N G +GVAP A +Y + + + + G++ A +G+ V +LSL
Sbjct: 75 ---NSIGV-----LGVAPNAE--LYAVKVLGASGGGSNSSIAQGLEWAGNNGMHVANLSL 124
Query: 290 G--FPETTFDENPIAIGAFAALKKGIFVACSAGNSG 323
G P T ++ +A +G+ V ++GNSG
Sbjct: 125 GSPSPSATLEQ-----AVNSATSRGVLVVAASGNSG 155
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 45/93 (48%), Gaps = 22/93 (23%)
Query: 492 AKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSC 551
A FS G L DI+APGV++ + P +T YA +GTSM+
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNVQSTY----PGST----------YASLNGTSMAT 218
Query: 552 PHAAGIATLLKATHHEWSSAAIRSAMMTTADVL 584
PH AG A L+K + WS+ IR+ + TA L
Sbjct: 219 PHVAGAAALVKQKNPSWSNVQIRNHLKNTATSL 251
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 68/156 (43%), Gaps = 37/156 (23%)
Query: 189 SFNKGLKQYGLK-------ISTTFDYD------------SPRDFFGHGTHTSSTIAGSRV 229
+ N+GL G+K IST D + S +D GHGTH + TIA
Sbjct: 16 AHNRGLTGSGVKVAVLDTGISTHPDLNIRGGASFVPGEPSTQDGNGHGTHVAGTIAALN- 74
Query: 230 QNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSL 289
N G +GVAP A +Y + + + + G++ A +G+ V +LSL
Sbjct: 75 ---NSIGV-----LGVAPSAE--LYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSL 124
Query: 290 G--FPETTFDENPIAIGAFAALKKGIFVACSAGNSG 323
G P T ++ +A +G+ V ++GNSG
Sbjct: 125 GSPSPSATLEQ-----AVNSATSRGVLVVAASGNSG 155
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant
Length = 269
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 45/93 (48%), Gaps = 22/93 (23%)
Query: 492 AKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSC 551
A FS G L DI+APGV++ + P +T YA +GTSM+
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNVQSTY----PGST----------YASLNGTSMAT 218
Query: 552 PHAAGIATLLKATHHEWSSAAIRSAMMTTADVL 584
PH AG A L+K + WS+ IR+ + TA L
Sbjct: 219 PHVAGAAALVKQKNPSWSNVQIRNHLKNTATSL 251
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 18/117 (15%)
Query: 209 SPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAV 268
S +D GHGTH + TIA N G +GVAP A +Y + + +
Sbjct: 55 STQDGNGHGTHVAGTIAALN----NSIGV-----LGVAPSAE--LYAVKVLGASGSGSYS 103
Query: 269 DVLAGMDQAIADGVDVM--SLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSG 323
+ G++ A +G+ V SL P T ++ +A +G+ V ++GNSG
Sbjct: 104 SIAQGLEWAGNNGMHVASLSLGSPSPSATLEQ-----AVNSATSRGVLVVAASGNSG 155
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 68/156 (43%), Gaps = 37/156 (23%)
Query: 189 SFNKGLKQYGLK-------ISTTFDYD------------SPRDFFGHGTHTSSTIAGSRV 229
+ N+GL G+K IST D + S +D GHGTH + TIA
Sbjct: 16 AHNRGLTGSGVKVAVLDTGISTHPDLNIRGGASFVPGEPSTQDGNGHGTHVAGTIAALN- 74
Query: 230 QNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSL 289
N G +GVAP A +Y + + + + G++ A +G+ V +LSL
Sbjct: 75 ---NSIGV-----LGVAPNAE--LYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSL 124
Query: 290 G--FPETTFDENPIAIGAFAALKKGIFVACSAGNSG 323
G P T ++ +A +G+ V ++GNSG
Sbjct: 125 GSPSPSATLEQ-----AVNSATSRGVLVVAASGNSG 155
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 22/93 (23%)
Query: 492 AKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSC 551
A FS G L DI+APGV++ + P +T YA +GT M+
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNVQSTY----PGST----------YASLNGTXMAT 218
Query: 552 PHAAGIATLLKATHHEWSSAAIRSAMMTTADVL 584
PH AG A L+K + WS+ IR+ + TA L
Sbjct: 219 PHVAGAAALVKQKNPSWSNVQIRNHLKNTATSL 251
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 67/156 (42%), Gaps = 37/156 (23%)
Query: 189 SFNKGLKQYGLK-------ISTTFDYD------------SPRDFFGHGTHTSSTIAGSRV 229
+ N+GL G+K IST D + S +D GHGTH + TIA
Sbjct: 16 AHNRGLTGSGVKVAVLDTGISTHPDLNIRGGASFVPGEPSTQDGNGHGTHVAGTIAALD- 74
Query: 230 QNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSL 289
N G +GVAP A +Y + + A + G++ A +G+ V +LSL
Sbjct: 75 ---NSIGV-----LGVAPSAE--LYAVKVLGASGSGAISSIAQGLEWAGNNGMHVANLSL 124
Query: 290 G--FPETTFDENPIAIGAFAALKKGIFVACSAGNSG 323
G P T ++ +A +G+ V ++GN G
Sbjct: 125 GSPSPSATLEQ-----AVNSATSRGVLVVAASGNEG 155
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 22/93 (23%)
Query: 492 AKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSC 551
A FS G L DI+APGV++ + P +T YA +GT M+
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNVQSTY----PGST----------YASLNGTXMAT 218
Query: 552 PHAAGIATLLKATHHEWSSAAIRSAMMTTADVL 584
PH AG A L+K + WS+ IR+ + TA L
Sbjct: 219 PHVAGAAALVKQKNPSWSNVQIRNHLKNTATSL 251
>pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87)
K27rV104YN123ST274A
Length = 269
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 22/93 (23%)
Query: 492 AKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSC 551
A FS G L DI+APGV++ + P +T YA +GT M+
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNVQSTY----PGST----------YASLNGTXMAT 218
Query: 552 PHAAGIATLLKATHHEWSSAAIRSAMMTTADVL 584
PH AG A L+K + WS+ IR+ + TA L
Sbjct: 219 PHVAGAAALVKQKNPSWSNVQIRNHLKNTATSL 251
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 18/117 (15%)
Query: 209 SPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAV 268
S +D GHGTH + TIA N G +GVAP A +Y + + +
Sbjct: 55 STQDGNGHGTHVAGTIAALN----NSIGV-----LGVAPSAE--LYAVKVLGASGSGSYS 103
Query: 269 DVLAGMDQAIADGVDV--MSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSG 323
+ G++ A +G+ V +SL P T ++ +A +G+ V ++GNSG
Sbjct: 104 SIAQGLEWAGNNGMHVASLSLGSPSPSATLEQ-----AVNSATSRGVLVVAASGNSG 155
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 19/122 (15%)
Query: 208 DSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAF-----YNDT 262
+S D GHGTH +AG+ + + G + GVAP A + YK+ Y+D
Sbjct: 63 NSCTDRNGHGTH----VAGTALADG---GSDQAGIYGVAPDADLWAYKVLLDSGSGYSDD 115
Query: 263 LKAAAVDVLAGMDQAIADGVD-VMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGN 321
+ AA + DQA A G ++S+SLG ++ + + I+ A KG+ + +AGN
Sbjct: 116 IAAA---IRHAADQATATGTKTIISMSLG---SSANNSLISSAVNYAYSKGVLIVAAAGN 169
Query: 322 SG 323
SG
Sbjct: 170 SG 171
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 18/100 (18%)
Query: 490 QVAKFSSRG-PSLRSPWILKP---DILAPGVDILGAWVPNRPIATIRDIGKLLTEYALES 545
+VA +SSRG S ++++ +I APG + W N TI S
Sbjct: 202 RVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWY-NGGYNTI-------------S 247
Query: 546 GTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLD 585
GTSM+ PH +G+A + A + S+ +RS + A +D
Sbjct: 248 GTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVD 287
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 19/122 (15%)
Query: 208 DSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAF-----YNDT 262
+S D GHGTH +AG+ + + G + GVAP A + YK+ Y+D
Sbjct: 63 NSCTDRNGHGTH----VAGTALADG---GSDQAGIYGVAPDADLWAYKVLLDSGSGYSDD 115
Query: 263 LKAAAVDVLAGMDQAIADGVD-VMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGN 321
+ AA + DQA A G ++S+SLG ++ + + I+ A KG+ + +AGN
Sbjct: 116 IAAA---IRHAADQATATGTKTIISMSLG---SSANNSLISSAVNYAYSKGVLIVAAAGN 169
Query: 322 SG 323
SG
Sbjct: 170 SG 171
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 18/100 (18%)
Query: 490 QVAKFSSRG-PSLRSPWILKP---DILAPGVDILGAWVPNRPIATIRDIGKLLTEYALES 545
+VA +SSRG S ++++ +I APG + W N TI S
Sbjct: 202 RVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWY-NGGYNTI-------------S 247
Query: 546 GTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLD 585
GT M+ PH +G+A + A + S+ +RS + A +D
Sbjct: 248 GTXMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVD 287
>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K)
pdb|1WME|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (1.50 Angstrom, 293 K)
Length = 434
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 10/76 (13%)
Query: 490 QVAKFSSRGPSLRSPWILKPDILAPGVDILGA---WVPNRPIATIRDIGKLLTEYALESG 546
VA+FSSRGP+ +KPD++APG IL A P+ D ++YA G
Sbjct: 201 HVAQFSSRGPTKDGR--IKPDVMAPGTFILSARSSLAPDSSFWANHD-----SKYAYMGG 253
Query: 547 TSMSCPHAAGIATLLK 562
TSM+ P AG L+
Sbjct: 254 TSMATPIVAGNVAQLR 269
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 47/100 (47%), Gaps = 18/100 (18%)
Query: 490 QVAKFSSRG-PSLRSPWILKP---DILAPGVDILGAWVPNRPIATIRDIGKLLTEYALES 545
+VA FSSRG ++++ +I APG + W D G YA S
Sbjct: 201 RVADFSSRGHKRTAGDYVIQKGDVEISAPGAAVYSTWF---------DGG-----YATIS 246
Query: 546 GTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLD 585
GTSM+ PHAAG+A + A S+ +R + T A V D
Sbjct: 247 GTSMASPHAAGLAAKIWAQSPAASNVDVRGELQTRASVND 286
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 64/136 (47%), Gaps = 18/136 (13%)
Query: 199 LKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKI-- 256
+ T F +S D GHGTH +AGS + N G G GVAP A + YK+
Sbjct: 54 FTVGTNFTDNSCTDRQGHGTH----VAGSALANG---GTGSGV-YGVAPEADLWAYKVLG 105
Query: 257 ---AFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPETTFDENPIAIGAFAALKKGI 313
+ Y D + A + DQA A V+ +++ ++ + + I A KG+
Sbjct: 106 DDGSGYADDIAEA---IRHAGDQATALNTKVV-INM-SLGSSGESSLITNAVDYAYDKGV 160
Query: 314 FVACSAGNSGPRPYSI 329
+ +AGNSGP+P SI
Sbjct: 161 LIIAAAGNSGPKPGSI 176
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 22/97 (22%)
Query: 492 AKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSC 551
A FSS G L +++APG + + N YA +GTSM+
Sbjct: 186 ASFSSVGAEL--------EVMAPGAGVYSTYPTNT--------------YATLNGTSMAS 223
Query: 552 PHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAY 588
PH AG A L+ + H S++ +R+ + +TA L +++
Sbjct: 224 PHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSSF 260
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 92/207 (44%), Gaps = 33/207 (15%)
Query: 175 FNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANY 234
ASH + ++G SF G Y++ D GHGTH + T+A N
Sbjct: 35 IQASHPDLNVVGGASFVAGEA-----------YNT--DGNGHGTHVAGTVAALD----NT 77
Query: 235 FGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPET 294
G +GVAP +++Y + N + + +++G++ A +G+DV+++SLG
Sbjct: 78 TG-----VLGVAP--SVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGASG 130
Query: 295 TFDENPIAIGAFAALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREF--AARV 352
+ A+A + A ++GNSG +I A + + + G VD A+
Sbjct: 131 STAMKQAVDNAYARGVVVVAAAGNSGNSGSTN-TIGYPAKYDSVIAVGAVDSNSNRASFS 189
Query: 353 TLGNEELSVIGK-----SVYPENLFVS 374
++G EL V+ S YP N + +
Sbjct: 190 SVG-AELEVMAPGAGVYSTYPTNTYAT 215
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
Length = 274
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 22/97 (22%)
Query: 492 AKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSC 551
A FSS G L +++APG + + N YA +GTSM+
Sbjct: 186 ASFSSVGAEL--------EVMAPGAGVYSTYPTNT--------------YATLNGTSMAS 223
Query: 552 PHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAY 588
PH AG A L+ + H S++ +R+ + +TA L +++
Sbjct: 224 PHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSSF 260
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 24/116 (20%)
Query: 175 FNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANY 234
ASH + ++G SF G Y++ D GHGTH + T+A N
Sbjct: 35 IQASHPDLNVVGGASFVAGEA-----------YNT--DGNGHGTHVAGTVAALD----NT 77
Query: 235 FGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLG 290
G +GVAP +++Y + N + + +++G++ A +G+DV+++SLG
Sbjct: 78 TG-----VLGVAP--SVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLG 126
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 22/97 (22%)
Query: 492 AKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSC 551
A FSS G L +++APG + + N YA +GTSM+
Sbjct: 186 ASFSSVGAEL--------EVMAPGAGVYSTYPTNT--------------YATLNGTSMAS 223
Query: 552 PHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAY 588
PH AG A L+ + H S++ +R+ + +TA L +++
Sbjct: 224 PHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSSF 260
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 92/207 (44%), Gaps = 33/207 (15%)
Query: 175 FNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANY 234
ASH + ++G SF G Y++ D GHGTH + T+A N
Sbjct: 35 IQASHPDLNVVGGASFVAGEA-----------YNT--DGNGHGTHVAGTVAALD----NT 77
Query: 235 FGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPET 294
G +GVAP +++Y + N + + +++G++ A +G+DV+++SLG
Sbjct: 78 TG-----VLGVAP--SVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGASG 130
Query: 295 TFDENPIAIGAFAALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREF--AARV 352
+ A+A + A ++GNSG +I A + + + G VD A+
Sbjct: 131 STAMKQAVDNAYARGVVVVAAAGNSGNSGSTN-TIGYPAKYDSVIAVGAVDSNSNRASFS 189
Query: 353 TLGNEELSVIGK-----SVYPENLFVS 374
++G EL V+ S YP N + +
Sbjct: 190 SVG-AELEVMAPGAGVYSTYPTNTYAT 215
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 22/97 (22%)
Query: 492 AKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSC 551
A FSS G L +++APG + + N YA +GTSM+
Sbjct: 186 ASFSSVGAEL--------EVMAPGAGVYSTYPTNT--------------YATLNGTSMAS 223
Query: 552 PHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAY 588
PH AG A L+ + H S++ +R+ + +TA L +++
Sbjct: 224 PHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSSF 260
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 24/116 (20%)
Query: 175 FNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANY 234
ASH + ++G SF G Y++ D GHGTH + T+A N
Sbjct: 35 IQASHPDLNVVGGASFVAGEA-----------YNT--DGNGHGTHVAGTVAALD----NT 77
Query: 235 FGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLG 290
G +GVAP +++Y + N + + +++G++ A +G+DV+++SLG
Sbjct: 78 TG-----VLGVAP--SVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLG 126
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 22/97 (22%)
Query: 492 AKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSC 551
A FSS G L +++APG + + N YA +GTSM+
Sbjct: 187 ASFSSVGAEL--------EVMAPGAGVYSTYPTNT--------------YATLNGTSMAS 224
Query: 552 PHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAY 588
PH AG A L+ + H S++ +R+ + +TA L +++
Sbjct: 225 PHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSSF 261
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 92/207 (44%), Gaps = 33/207 (15%)
Query: 175 FNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANY 234
ASH + ++G SF G Y++ D GHGTH + T+A N
Sbjct: 36 IQASHPDLNVVGGASFVAGEA-----------YNT--DGNGHGTHVAGTVAALD----NT 78
Query: 235 FGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPET 294
G +GVAP +++Y + N + + +++G++ A +G+DV+++SLG
Sbjct: 79 TG-----VLGVAP--SVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGASG 131
Query: 295 TFDENPIAIGAFAALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREF--AARV 352
+ A+A + A ++GNSG +I A + + + G VD A+
Sbjct: 132 STAMKQAVDNAYARGVVVVAAAGNSGNSGSTN-TIGYPAKYDSVIAVGAVDSNSNRASFS 190
Query: 353 TLGNEELSVIGK-----SVYPENLFVS 374
++G EL V+ S YP N + +
Sbjct: 191 SVG-AELEVMAPGAGVYSTYPTNTYAT 216
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 22/97 (22%)
Query: 492 AKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSC 551
A FSS G L +++APG + + N YA +GTSM+
Sbjct: 187 ASFSSVGAEL--------EVMAPGAGVYSTYPTNT--------------YATLNGTSMAS 224
Query: 552 PHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAY 588
PH AG A L+ + H S++ +R+ + +TA L +++
Sbjct: 225 PHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSSF 261
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 24/116 (20%)
Query: 175 FNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANY 234
ASH + ++G SF G Y++ D GHGTH + T+A N
Sbjct: 36 IQASHPDLNVVGGASFVAGEA-----------YNT--DGNGHGTHVAGTVAALD----NT 78
Query: 235 FGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLG 290
G +GVAP +++Y + N + + +++G++ A +G+DV+++SLG
Sbjct: 79 TG-----VLGVAP--SVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLG 127
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 22/97 (22%)
Query: 492 AKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSC 551
A FSS G L +++APG + + N YA +GT M+
Sbjct: 186 ASFSSVGAEL--------EVMAPGAGVYSTYPTNT--------------YATLNGTXMAS 223
Query: 552 PHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAY 588
PH AG A L+ + H S++ +R+ + +TA L +++
Sbjct: 224 PHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSSF 260
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 92/207 (44%), Gaps = 33/207 (15%)
Query: 175 FNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANY 234
ASH + ++G SF G Y++ D GHGTH + T+A N
Sbjct: 35 IQASHPDLNVVGGASFVAGEA-----------YNT--DGNGHGTHVAGTVAALD----NT 77
Query: 235 FGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPET 294
G +GVAP +++Y + N + + +++G++ A +G+DV+++SLG
Sbjct: 78 TG-----VLGVAP--SVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGASG 130
Query: 295 TFDENPIAIGAFAALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREF--AARV 352
+ A+A + A ++GNSG +I A + + + G VD A+
Sbjct: 131 STAMKQAVDNAYARGVVVVAAAGNSGNSGSTN-TIGYPAKYDSVIAVGAVDSNSNRASFS 189
Query: 353 TLGNEELSVIGK-----SVYPENLFVS 374
++G EL V+ S YP N + +
Sbjct: 190 SVG-AELEVMAPGAGVYSTYPTNTYAT 215
>pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom)
Length = 434
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 10/76 (13%)
Query: 490 QVAKFSSRGPSLRSPWILKPDILAPGVDILGA---WVPNRPIATIRDIGKLLTEYALESG 546
VA+FSSRGP+ +KPD++APG IL A P+ D ++YA G
Sbjct: 201 HVAQFSSRGPTKDGR--IKPDVMAPGTFILSARSSLAPDSSFWANHD-----SKYAYXGG 253
Query: 547 TSMSCPHAAGIATLLK 562
TS + P AG L+
Sbjct: 254 TSXATPIVAGNVAQLR 269
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 24/105 (22%)
Query: 480 ITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLT 539
I + T + + FS+ G W+ D+ APG I + P +T
Sbjct: 179 IAVASTDQNDNKSSFSTYGS-----WV---DVAAPGSSIYSTY----PTST--------- 217
Query: 540 EYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVL 584
YA SGTSM+ PH AG+A LL + S++ IR+A+ TAD +
Sbjct: 218 -YASLSGTSMATPHVAGVAGLLASQGR--SASNIRAAIENTADKI 259
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 60/157 (38%), Gaps = 38/157 (24%)
Query: 148 PESPSFKDDGMPP----VPERW-----RGA----CEVGVEFNASHCNRKLIGARSFNKGL 194
P P F P P+ W GA + GV+ N K++G F
Sbjct: 3 PNDPYFSSRQYGPQKIQAPQAWDIAEGSGAKIAIVDTGVQSNHPDLAGKVVGGWDF---- 58
Query: 195 KQYGLKISTTFDYDS-PRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAM 253
D DS P++ GHGTH + IA + N + G A G AP A I
Sbjct: 59 ----------VDNDSTPQNGNGHGTHCAG-IAAAVTNN------STGIA-GTAPKASILA 100
Query: 254 YKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLG 290
++ +++ V G+ A G V+SLSLG
Sbjct: 101 VRV--LDNSGSGTWTAVANGITYAADQGAKVISLSLG 135
>pdb|1IC6|A Chain A, Structure Of A Serine Protease Proteinase K From
Tritirachium Album Limber At 0.98 A Resolution
pdb|1P7V|A Chain A, Structure Of A Complex Formed Between Proteinase K And A
Designed Heptapeptide Inhibitor Pro-Ala-Pro-Phe-Ala-Ala-
Ala At Atomic Resolution
pdb|1P7W|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Designed Heptapeptide Inhibitor
Pro-Ala-Pro-Phe-Ala-Ser-Ala At Atomic Resolution
pdb|2HD4|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Octapeptide Gly-Asp-Glu-Gln-Gly-Glu-Asn-Lys
At 2.15 A Resolution
pdb|2DQK|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Specific Lactoferrin Peptide Val-Leu-Leu-His At 1.93 A
Resolution
pdb|2HPZ|A Chain A, Crystal Structure Of Proteinase K Complex With A Synthetic
Peptide Klkllvvirlk At 1.69 A Resolution
pdb|2DUJ|A Chain A, Crystal Structure Of The Complex Formed Between Proteinase
K And A Synthetic Peptide Leu-Leu-Phe-Asn-Asp At 1.67 A
Resolution
pdb|2ID8|A Chain A, Crystal Structure Of Proteinase K
pdb|2G4V|A Chain A, Anomalous Substructure Of Proteinase K
pdb|2PQ2|A Chain A, Structure Of Serine Proteinase K Complex With A Highly
Flexible Hydrophobic Peptide At 1.8a Resolution
pdb|2PWA|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Alanine Boronic Acid At 0.83a Resolution
pdb|2PWB|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Coumarin At 1.9 A Resolution
pdb|2PYZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Auramine At 1.8a Resolution
pdb|2V8B|A Chain A, Sad Structure Solution Of Proteinase K Grown In Selenate
Solution
pdb|3DYB|A Chain A, Proteinase K- Digalacturonic Acid Complex
pdb|3GT3|A Chain A, Structure Of Proteinase K With The Mad Triangle B3c
pdb|3GT4|A Chain A, Structure Of Proteinase K With The Magic Triangle I3c
pdb|3OSZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With An
Antimicrobial Nonapeptide, At 2.26 A Resolution
pdb|3L1K|A Chain A, Sad Structure Solution Of Proteinase K Grown In Potassium
Tellurate Solution
pdb|3AJ8|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
H2o Solution Using Peg 8000
pdb|3AJ9|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
D2o Solution Using Peg 8000
pdb|3Q40|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution.
pdb|3Q5G|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4 Solution
pdb|3QMP|A Chain A, Selenium Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution And Soaked In Selenate.
pdb|4B5L|A Chain A, The 1.6 A High Energy Room Temperature Structure Of
Proteinase K At 38.4 Kev And 0.04 Mgy
pdb|4FON|A Chain A, High Energy Remote Sad Structure Solution Of Proteinase K
From The 37.8 Kev Tellurium K Edge
Length = 279
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 14/65 (21%)
Query: 510 DILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWS 569
DI PG DIL W+ + R I SGTSM+ PH AG+A L +
Sbjct: 200 DIFGPGTDILSTWIG----GSTRSI----------SGTSMATPHVAGLAAYLMTLGKTTA 245
Query: 570 SAAIR 574
++A R
Sbjct: 246 ASACR 250
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 64/145 (44%), Gaps = 32/145 (22%)
Query: 207 YDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAA 266
Y S RD GHGTH + T+ GSR +G A+ + ++ + +D
Sbjct: 60 YYSSRDGNGHGTHCAGTV-GSRT-----YGVAK----------KTQLFGVKVLDDNGSGQ 103
Query: 267 AVDVLAGMDQAIAD--------GVDVMSLSLGFPETTFDENPIAIGAFAALKKGIFVACS 318
++AGMD +D GV V SLSLG ++ + A G+ VA +
Sbjct: 104 YSTIIAGMDFVASDKNNRNCPKGV-VASLSLGGGYSS----SVNSAAARLQSSGVMVAVA 158
Query: 319 AGNSG--PRPYSIENGAPWITTVGA 341
AGN+ R YS + P + TVGA
Sbjct: 159 AGNNNADARNYSPAS-EPSVCTVGA 182
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 539 TEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVL 584
+ YA SGTSM+ PH AG+A LL + S++ IR+A+ TAD +
Sbjct: 216 STYASLSGTSMATPHVAGVAGLLASQGR--SASNIRAAIENTADKI 259
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 60/157 (38%), Gaps = 38/157 (24%)
Query: 148 PESPSFKDDGMPP----VPERW-----RGA----CEVGVEFNASHCNRKLIGARSFNKGL 194
P P F P P+ W GA + GV+ N K++G F
Sbjct: 3 PNDPYFSSRQYGPQKIQAPQAWDIAEGSGAKIAIVDTGVQSNHPDLAGKVVGGWDF---- 58
Query: 195 KQYGLKISTTFDYDS-PRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAM 253
D DS P++ GHGTH + IA + N + G A G AP A I
Sbjct: 59 ----------VDNDSTPQNGNGHGTHCAG-IAAAVTNN------STGIA-GTAPKASILA 100
Query: 254 YKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLG 290
++ +++ V G+ A G V+SLSLG
Sbjct: 101 VRV--LDNSGSGTWTAVANGITYAADQGAKVISLSLG 135
>pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme
From A Psychrotroph Serratia Species
Length = 278
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 48/119 (40%), Gaps = 27/119 (22%)
Query: 480 ITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAW-VPNRPIATIRDIGKLL 538
IT+ T + + FS+ G L DI APG I +W N TI
Sbjct: 176 ITVGSTTSNDSRSSFSNYGTCL--------DIYAPGSSITSSWYTSNSATNTI------- 220
Query: 539 TEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADISTG 597
SGTSM+ PH AG+A L + S A + + + T A D + D TG
Sbjct: 221 ------SGTSMASPHVAGVAALYLDENPNLSPAQVTNLLKTRATA-----DKVTDAKTG 268
>pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 329
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 101/270 (37%), Gaps = 72/270 (26%)
Query: 113 THTPKFVGLKKHAGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVG 172
+ P V + + +W A+ G+ I+GVID+G + P +
Sbjct: 19 SEVPMGVEIVEAPAVWRASAKGAGQIIGVIDTGCQVDHPDLAE----------------- 61
Query: 173 VEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPR--DFFGHGTHTSSTIAGSRVQ 230
++IG G+ ++T + D D GHGTH + T+A +
Sbjct: 62 ----------RIIG-----------GVNLTTDYGGDETNFSDNNGHGTHVAGTVAAAETG 100
Query: 231 NANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVD------- 283
+ +GVAP A + + K L + + +AI VD
Sbjct: 101 SG---------VVGVAPKADLFIIK------ALSGDGSGEMGWIAKAIRYAVDWRGPKGE 145
Query: 284 ---VMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGP-RPYSIENGAP--WIT 337
++++SLG P D + A+ + V C+AGN G R + E P +
Sbjct: 146 QMRIITMSLGGPT---DSEELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNE 202
Query: 338 TVGAGTVDREFA-ARVTLGNEELSVIGKSV 366
+ G VD + + T NEE+ ++ V
Sbjct: 203 VIAVGAVDFDLRLSDFTNTNEEIDIVAPGV 232
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 14/52 (26%)
Query: 510 DILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLL 561
DI+APGV I + L + YA SGT+M+ PH AG L+
Sbjct: 226 DIVAPGVGIKSTY--------------LDSGYAELSGTAMAAPHVAGALALI 263
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 60/150 (40%), Gaps = 34/150 (22%)
Query: 212 DFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVL 271
D GHGTH TIA N G +GVAP +I Y + + + D+
Sbjct: 149 DQNGHGTHVIGTIAALN----NDIG-----VVGVAPGVQI--YSVRVLDARGSGSYSDIA 197
Query: 272 AGMDQAI--------------------ADGVDVMSLSLGFPETTFDENPIAIGAFAALKK 311
G++QAI AD +V+S+SLG P D++ + A
Sbjct: 198 IGIEQAILGPDGVADKDGDGIIAGDPDADAAEVISMSLGGPA---DDSYLYDMIIQAYNA 254
Query: 312 GIFVACSAGNSGPRPYSIENGAPWITTVGA 341
GI + ++GN G S P + VGA
Sbjct: 255 GIVIVAASGNEGAPSPSYPAAYPEVIAVGA 284
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 24/77 (31%)
Query: 491 VAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMS 550
+A FS+R +P++ APGVDIL + P+ T+ GT+M+
Sbjct: 291 IASFSNR----------QPEVSAPGVDILSTY-PDDSYETLM-------------GTAMA 326
Query: 551 CPHAAGIATLLKATHHE 567
PH +G+ L++A +++
Sbjct: 327 TPHVSGVVALIQAAYYQ 343
>pdb|3F7M|A Chain A, Crystal Structure Of Apo Cuticle-Degrading Protease
(Ver112) From Verticillium Psalliotae
Length = 279
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 30/142 (21%)
Query: 209 SPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAV 268
+ RD GHGTH + TI GS+ +G A+ +++++ + +D+ +
Sbjct: 63 TARDGHGHGTHCAGTI-GSKT-----WGVAK----------KVSIFGVKVLDDSGSGSLS 106
Query: 269 DVLAGMDQAIADGVDVMSLSLGFPETTFDENPIAIGAFAALKK--------GIFVACSAG 320
+++AGMD +D S P T + G AAL + G+FVA +AG
Sbjct: 107 NIIAGMDFVASD-----RQSRNCPRRTVASMSLGGGYSAALNQAAARLQSSGVFVAVAAG 161
Query: 321 NSGPRPYSIENGA-PWITTVGA 341
N + + P + TVGA
Sbjct: 162 NDNRDAANTSPASEPTVCTVGA 183
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 24/52 (46%), Gaps = 14/52 (26%)
Query: 510 DILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLL 561
DI APG I W+ R TI SGTSM+ PH AG+A L
Sbjct: 201 DIFAPGTSITSTWIGGR-TNTI-------------SGTSMATPHIAGLAAYL 238
>pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii
Length = 311
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 101/270 (37%), Gaps = 72/270 (26%)
Query: 113 THTPKFVGLKKHAGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVG 172
+ P V + + +W A+ G+ I+GVID+G + P +
Sbjct: 1 SEVPMGVEIVEAPAVWRASAKGAGQIIGVIDTGCQVDHPDLAE----------------- 43
Query: 173 VEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPR--DFFGHGTHTSSTIAGSRVQ 230
++IG G+ ++T + D D GHGTH + T+A +
Sbjct: 44 ----------RIIG-----------GVNLTTDYGGDETNFSDNNGHGTHVAGTVAAAETG 82
Query: 231 NANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVD------- 283
+ +GVAP A + + K L + + +AI VD
Sbjct: 83 SG---------VVGVAPKADLFIIK------ALSGDGSGEMGWIAKAIRYAVDWRGPKGE 127
Query: 284 ---VMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGP-RPYSIENGAP--WIT 337
++++SLG P D + A+ + V C+AGN G R + E P +
Sbjct: 128 QMRIITMSLGGPT---DSEELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNE 184
Query: 338 TVGAGTVDREFA-ARVTLGNEELSVIGKSV 366
+ G VD + + T NEE+ ++ V
Sbjct: 185 VIAVGAVDFDLRLSDFTNTNEEIDIVAPGV 214
>pdb|3TI7|A Chain A, Crystal Structure Of The Basic Protease Bprv From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 15/82 (18%)
Query: 480 ITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLT 539
+++ T P + A FS+ G + + APG +IL + G + +
Sbjct: 224 LSVGATTPKGKRAPFSNYGARVH--------LAAPGTNIL-------STIDVGQAGPVRS 268
Query: 540 EYALESGTSMSCPHAAGIATLL 561
Y +++GTSM+ PH +G+A L+
Sbjct: 269 SYGMKAGTSMAAPHVSGVAALV 290
>pdb|3TI9|A Chain A, Crystal Structure Of The Basic Protease Bprb From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 15/82 (18%)
Query: 480 ITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLT 539
+++ T P + A FS+ G + + APG +IL + G + +
Sbjct: 224 LSVGATTPKGKRAPFSNYGARVH--------LAAPGTNIL-------STIDVGQAGPVRS 268
Query: 540 EYALESGTSMSCPHAAGIATLL 561
Y +++GTSM+ PH +G+A L+
Sbjct: 269 SYGMKAGTSMAAPHVSGVAALV 290
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 36.2 bits (82), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 24/77 (31%)
Query: 491 VAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMS 550
+A FS+R +P++ APGVDIL + P+ T+ GT+M+
Sbjct: 211 IASFSNR----------QPEVSAPGVDILSTY-PDDSYETLM-------------GTAMA 246
Query: 551 CPHAAGIATLLKATHHE 567
PH +G+ L++A +++
Sbjct: 247 TPHVSGVVALIQAAYYQ 263
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 59/150 (39%), Gaps = 34/150 (22%)
Query: 212 DFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVL 271
D GHGTH TIA N G +GVAP +I Y + + + D+
Sbjct: 69 DQNGHGTHVIGTIAALN----NDIG-----VVGVAPGVQI--YSVRVLDARGSGSYSDIA 117
Query: 272 AGMDQAIA--------------------DGVDVMSLSLGFPETTFDENPIAIGAFAALKK 311
G++QAI D +V+S+SLG P D++ + A
Sbjct: 118 IGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPA---DDSYLYDMIIQAYNA 174
Query: 312 GIFVACSAGNSGPRPYSIENGAPWITTVGA 341
GI + ++GN G S P + VGA
Sbjct: 175 GIVIVAASGNEGAPSPSYPAAYPEVIAVGA 204
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 36.2 bits (82), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 24/77 (31%)
Query: 491 VAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMS 550
+A FS+R +P++ APGVDIL + P+ T+ GT+M+
Sbjct: 213 IASFSNR----------QPEVSAPGVDILSTY-PDDSYETLM-------------GTAMA 248
Query: 551 CPHAAGIATLLKATHHE 567
PH +G+ L++A +++
Sbjct: 249 TPHVSGVVALIQAAYYQ 265
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 59/150 (39%), Gaps = 34/150 (22%)
Query: 212 DFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVL 271
D GHGTH TIA N G +GVAP +I Y + + + D+
Sbjct: 71 DQNGHGTHVIGTIAALN----NDIG-----VVGVAPGVQI--YSVRVLDARGSGSYSDIA 119
Query: 272 AGMDQAIA--------------------DGVDVMSLSLGFPETTFDENPIAIGAFAALKK 311
G++QAI D +V+S+SLG P D++ + A
Sbjct: 120 IGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPA---DDSYLYDMIIQAYNA 176
Query: 312 GIFVACSAGNSGPRPYSIENGAPWITTVGA 341
GI + ++GN G S P + VGA
Sbjct: 177 GIVIVAASGNEGAPSPSYPAAYPEVIAVGA 206
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 37/107 (34%)
Query: 491 VAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMS 550
+A FS+R +P++ APGVDIL + P+ T+ GT+M+
Sbjct: 291 IASFSNR----------QPEVSAPGVDILSTY-PDDSYETLM-------------GTAMA 326
Query: 551 CPHAAGIATLLKATHHE-------------WSSAAIRSAMMTTADVL 584
PH +G+ L++A +++ S +R + TAD L
Sbjct: 327 TPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADAL 373
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 59/150 (39%), Gaps = 34/150 (22%)
Query: 212 DFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVL 271
D GHGTH TIA N G +GVAP +I Y + + + D+
Sbjct: 149 DQNGHGTHVIGTIAALN----NDIG-----VVGVAPGVQI--YSVRVLDARGSGSYSDIA 197
Query: 272 AGMDQAIA--------------------DGVDVMSLSLGFPETTFDENPIAIGAFAALKK 311
G++QAI D +V+S+SLG P D++ + A
Sbjct: 198 IGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPA---DDSYLYDMIIQAYNA 254
Query: 312 GIFVACSAGNSGPRPYSIENGAPWITTVGA 341
GI + ++GN G S P + VGA
Sbjct: 255 GIVIVAASGNEGAPSPSYPAAYPEVIAVGA 284
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 24/77 (31%)
Query: 491 VAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMS 550
+A FS+R +P++ APGVDIL + P+ T+ GT+M+
Sbjct: 291 IASFSNR----------QPEVSAPGVDILSTY-PDDSYETLM-------------GTAMA 326
Query: 551 CPHAAGIATLLKATHHE 567
PH +G+ L++A +++
Sbjct: 327 TPHVSGVVALIQAAYYQ 343
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 59/150 (39%), Gaps = 34/150 (22%)
Query: 212 DFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVL 271
D GHGTH TIA N G +GVAP +I Y + + + D+
Sbjct: 149 DQNGHGTHVIGTIAALN----NDIG-----VVGVAPGVQI--YSVRVLDARGSGSYSDIA 197
Query: 272 AGMDQAIA--------------------DGVDVMSLSLGFPETTFDENPIAIGAFAALKK 311
G++QAI D +V+S+SLG P D++ + A
Sbjct: 198 IGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPA---DDSYLYDMIIQAYNA 254
Query: 312 GIFVACSAGNSGPRPYSIENGAPWITTVGA 341
GI + ++GN G S P + VGA
Sbjct: 255 GIVIVAASGNEGAPSPSYPAAYPEVIAVGA 284
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 24/77 (31%)
Query: 491 VAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMS 550
+A FS+R +P++ APGVDIL + P+ T+ GT+M+
Sbjct: 291 IASFSNR----------QPEVSAPGVDILSTY-PDDSYETLM-------------GTAMA 326
Query: 551 CPHAAGIATLLKATHHE 567
PH +G+ L++A +++
Sbjct: 327 TPHVSGVVALIQAAYYQ 343
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 61/150 (40%), Gaps = 34/150 (22%)
Query: 212 DFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVL 271
D GHGTH TIA N G +GVAP +I Y + + + D+
Sbjct: 149 DQNGHGTHVIGTIAALN----NDIG-----VVGVAPGVQI--YSVRVLDARGSGSYSDIA 197
Query: 272 AGMDQAI----------ADGV----------DVMSLSLGFPETTFDENPIAIGAFAALKK 311
G++QAI DG+ +V+S+SLG P D++ + A
Sbjct: 198 IGIEQAILGPDGVADKDGDGIIAGDPDDAAAEVISMSLGGPA---DDSYLYDMIIQAYNA 254
Query: 312 GIFVACSAGNSGPRPYSIENGAPWITTVGA 341
GI + ++GN G S P + VGA
Sbjct: 255 GIVIVAASGNEGAPSPSYPAAYPEVIAVGA 284
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 35.8 bits (81), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 24/77 (31%)
Query: 491 VAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMS 550
+A FS+R +P++ APGVDIL + P+ T+ GT+M+
Sbjct: 288 IASFSNR----------QPEVSAPGVDILSTY-PDDSYETLM-------------GTAMA 323
Query: 551 CPHAAGIATLLKATHHE 567
PH +G+ L++A +++
Sbjct: 324 TPHVSGVVALIQAAYYQ 340
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 59/150 (39%), Gaps = 34/150 (22%)
Query: 212 DFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVL 271
D GHGTH TIA N G +GVAP +I Y + + + D+
Sbjct: 146 DQNGHGTHVIGTIAALN----NDIG-----VVGVAPGVQI--YSVRVLDARGSGSYSDIA 194
Query: 272 AGMDQAIA--------------------DGVDVMSLSLGFPETTFDENPIAIGAFAALKK 311
G++QAI D +V+S+SLG P D++ + A
Sbjct: 195 IGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPA---DDSYLYDMIIQAYNA 251
Query: 312 GIFVACSAGNSGPRPYSIENGAPWITTVGA 341
GI + ++GN G S P + VGA
Sbjct: 252 GIVIVAASGNEGAPSPSYPAAYPEVIAVGA 281
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 35.8 bits (81), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 24/77 (31%)
Query: 491 VAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMS 550
+A FS+R +P++ APGVDIL + P+ T+ GT+M+
Sbjct: 222 IASFSNR----------QPEVSAPGVDILSTY-PDDSYETLM-------------GTAMA 257
Query: 551 CPHAAGIATLLKATHHE 567
PH +G+ L++A +++
Sbjct: 258 TPHVSGVVALIQAAYYQ 274
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 61/150 (40%), Gaps = 34/150 (22%)
Query: 212 DFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVL 271
D GHGTH TIA N G +GVAP +I Y + + + D+
Sbjct: 80 DQNGHGTHVIGTIAALN----NDIG-----VVGVAPGVQI--YSVRVLDARGSGSYSDIA 128
Query: 272 AGMDQAI----------ADGV----------DVMSLSLGFPETTFDENPIAIGAFAALKK 311
G++QAI DG+ +V+S+SLG P D++ + A
Sbjct: 129 IGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPA---DDSYLYDMIIQAYNA 185
Query: 312 GIFVACSAGNSGPRPYSIENGAPWITTVGA 341
GI + ++GN G S P + VGA
Sbjct: 186 GIVIVAASGNEGAPSPSYPAAYPEVIAVGA 215
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 24/77 (31%)
Query: 491 VAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMS 550
+A FS+R +P++ APGVDIL + P+ T+ GT+M+
Sbjct: 222 IASFSNR----------QPEVSAPGVDILSTY-PDDSYETLM-------------GTAMA 257
Query: 551 CPHAAGIATLLKATHHE 567
PH +G+ L++A +++
Sbjct: 258 TPHVSGVVALIQAAYYQ 274
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 60/150 (40%), Gaps = 34/150 (22%)
Query: 212 DFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVL 271
D GHGTH TIA N G +GVAP +I Y + + + D+
Sbjct: 80 DQNGHGTHVIGTIAALN----NDIG-----VVGVAPGVQI--YSVRVLDARGSGSYSDIA 128
Query: 272 AGMDQAI----------ADGV----------DVMSLSLGFPETTFDENPIAIGAFAALKK 311
G+ QAI DG+ +V+S+SLG P D++ + A
Sbjct: 129 IGIAQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPA---DDSYLYDMIIQAYNA 185
Query: 312 GIFVACSAGNSGPRPYSIENGAPWITTVGA 341
GI + ++GN G S P + VGA
Sbjct: 186 GIVIVAASGNEGAPSPSYPAAYPEVIAVGA 215
>pdb|3PRK|E Chain E, Inhibition Of Proteinase K By
Methoxysuccinyl-Ala-Ala-Pro-Ala- Chloromethyl Ketone. An
X-Ray Study At 2.2-Angstroms Resolution
pdb|1BJR|E Chain E, Complex Formed Between Proteolytically Generated
Lactoferrin Fragment And Proteinase K
pdb|1CNM|A Chain A, Enhancement Of Catalytic Efficiency Of Proteinase K
Through Exposure To Anhydrous Organic Solvent At 70
Degrees Celsius
pdb|1EGQ|A Chain A, Enhancement Of Enzyme Activity Through Three-Phase
Partitioning: Crystal Structure Of A Modified Serine
Proteinase At 1.5 A Resolution
pdb|1OYO|A Chain A, Regulation Of Protease Activity By Melanin: Crystal
Structure Of The Complex Formed Between Proteinase K And
Melanin Monomers At 2.0 Resolution
pdb|1PJ8|A Chain A, Structure Of A Ternary Complex Of Proteinase K, Mercury
And A Substrate-Analogue Hexapeptide At 2.2 A Resolution
pdb|2DP4|E Chain E, Crystal Structure Of The Complex Formed Between Proteinase
K And A Human Lactoferrin Fragment At 2.9 A Resolution
pdb|1PTK|A Chain A, Studies On The Inhibitory Action Of Mercury Upon
Proteinase K
pdb|2PKC|A Chain A, Crystal Structure Of Calcium-Free Proteinase K At 1.5
Angstroms Resolution
pdb|2PRK|A Chain A, Synchrotron X-Ray Data Collection And Restrained Least-
Squares Refinement Of The Crystal Structure Of
Proteinase K At 1.5 Angstroms Resolution
pdb|3D9Q|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id23-1 Beamline
pdb|3DDZ|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE0|X Chain X, Proteinase K By Lb Nanotemplate Method After The Second
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE2|X Chain X, Proteinase K By Lb Nanotemplate Method After The Fourth
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- Ray Dose On Esrf Id23-1 Beamline
pdb|3DE4|X Chain X, Proteinase K By Classical Hanging Drop Method After The
First Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE5|X Chain X, Roteinase K By Classical Hanging Drop Method After The
Second Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE6|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Third Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE7|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Fourth Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DVQ|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3DVR|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DVS|X Chain X, Proteinase K By Lb Nanotmplate Method After The Second
Step Of High Dose On Esrf Id14-2 Beamline
pdb|3DW1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DW3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X Ray Dose On Esrf Id 14-2 Beamline
pdb|3DWE|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X- Ray Dose On Esrf Id14-2 Beamline
pdb|3I2Y|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- On Id14-2 Beamline At Esrf
pdb|3I30|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X-R Id14-2 Beamline At Esrf
pdb|3I37|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dos 2 Beamline At Esrf
pdb|3I34|X Chain X, Proteinase K By Lb Nanotemplate Method After High X-Ray
Dose On Id14-2 Beamline At Esrf
pdb|3PTL|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Nonapeptide,
Lys-Gly-Glu-Ala-Asp-Ala-Leu-Ser-Leu-Asp At 1.3 A
Resolution.
pdb|4DJ5|X Chain X, Proteinase K By Langmuir-Blodgett Hanging Drop Method At
1.8a Resolution For Unique Water Distribution
Length = 279
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 64/145 (44%), Gaps = 32/145 (22%)
Query: 207 YDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAA 266
Y S RD GHGTH + T+ GSR +G A+ + ++ + +D
Sbjct: 60 YYSSRDGNGHGTHCAGTV-GSRT-----YGVAK----------KTQLFGVKVLDDNGSGQ 103
Query: 267 AVDVLAGMDQAIAD--------GVDVMSLSLGFPETTFDENPIAIGAFAALKKGIFVACS 318
++AGMD +D GV V SLSLG ++ + A G+ VA +
Sbjct: 104 YSTIIAGMDFVASDKNNRNCPKGV-VASLSLGGGYSS----SVNSAAARLQSSGVMVAVA 158
Query: 319 AGNSG--PRPYSIENGAPWITTVGA 341
AGN+ R YS + P + TVGA
Sbjct: 159 AGNNNADARNYSPAS-EPSVCTVGA 182
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 14/65 (21%)
Query: 510 DILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWS 569
DI PG IL W+ + R I SGTSM+ PH AG+A L +
Sbjct: 200 DIFGPGTSILSTWIG----GSTRSI----------SGTSMATPHVAGLAAYLMTLGKTTA 245
Query: 570 SAAIR 574
++A R
Sbjct: 246 ASACR 250
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 24/77 (31%)
Query: 491 VAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMS 550
+A FS+R +P++ APGVDIL + P+ T+ GT M+
Sbjct: 211 IASFSNR----------QPEVSAPGVDILSTY-PDDSYETLM-------------GTXMA 246
Query: 551 CPHAAGIATLLKATHHE 567
PH +G+ L++A +++
Sbjct: 247 TPHVSGVVALIQAAYYQ 263
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 59/150 (39%), Gaps = 34/150 (22%)
Query: 212 DFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVL 271
D GHGTH TIA N G +GVAP +I Y + + + D+
Sbjct: 69 DQNGHGTHVIGTIAALN----NDIG-----VVGVAPGVQI--YSVRVLDARGSGSYSDIA 117
Query: 272 AGMDQAIA--------------------DGVDVMSLSLGFPETTFDENPIAIGAFAALKK 311
G++QAI D +V+S+SLG P D++ + A
Sbjct: 118 IGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPA---DDSYLYDMIIQAYNA 174
Query: 312 GIFVACSAGNSGPRPYSIENGAPWITTVGA 341
GI + ++GN G S P + VGA
Sbjct: 175 GIVIVAASGNEGAPSPSYPAAYPEVIAVGA 204
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 24/77 (31%)
Query: 491 VAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMS 550
+A FS+R +P++ APGVDIL + P+ T+ GT M+
Sbjct: 211 IASFSNR----------QPEVSAPGVDILSTY-PDDSYETLM-------------GTCMA 246
Query: 551 CPHAAGIATLLKATHHE 567
PH +G+ L++A +++
Sbjct: 247 TPHVSGVVALIQAAYYQ 263
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 59/150 (39%), Gaps = 34/150 (22%)
Query: 212 DFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVL 271
D GHGTH TIA N G +GVAP +I Y + + + D+
Sbjct: 69 DQNGHGTHVIGTIAALN----NDIG-----VVGVAPGVQI--YSVRVLDARGSGSYSDIA 117
Query: 272 AGMDQAIA--------------------DGVDVMSLSLGFPETTFDENPIAIGAFAALKK 311
G++QAI D +V+S+SLG P D++ + A
Sbjct: 118 IGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPA---DDSYLYDMIIQAYNA 174
Query: 312 GIFVACSAGNSGPRPYSIENGAPWITTVGA 341
GI + ++GN G S P + VGA
Sbjct: 175 GIVIVAASGNEGAPSPSYPAAYPEVIAVGA 204
>pdb|1PEK|E Chain E, Structure Of The Complex Of Proteinase K With A
Substrate-analogue Hexa-peptide Inhibitor At 2.2
Angstroms Resolution
pdb|1HT3|A Chain A, Mercury Induced Modifications In The Stereochemistry Of
The Active Site Through Cys-73 In A Serine Protease:
Crystal Structure Of The Complex Of A Partially Modified
Proteinase K With Mercury At 1.8 A Resolution
pdb|1PFG|A Chain A, Strategy To Design Inhibitors: Structure Of A Complex Of
Proteinase K With A Designed Octapeptide Inhibitor
N-Ac-Pro-Ala-Pro-Phe-Dala-Ala- Ala-Ala-Nh2 At 2.5a
Resolution
Length = 279
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 14/65 (21%)
Query: 510 DILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWS 569
DI PG IL W+ + R I SGTSM+ PH AG+A L +
Sbjct: 200 DIFGPGTSILSTWIG----GSTRSI----------SGTSMATPHVAGLAAYLMTLGKTTA 245
Query: 570 SAAIR 574
++A R
Sbjct: 246 ASACR 250
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 63/145 (43%), Gaps = 32/145 (22%)
Query: 207 YDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAA 266
Y S RD GHGTH + T+ GSR GV + + ++ + +D
Sbjct: 60 YYSSRDGNGHGTHCAGTV-GSRT-------------YGV--VKKTQLFGVKVLDDNGSGQ 103
Query: 267 AVDVLAGMDQAIAD--------GVDVMSLSLGFPETTFDENPIAIGAFAALKKGIFVACS 318
++AGMD +D GV V SLSLG ++ + A G+ VA +
Sbjct: 104 YSTIIAGMDFVASDKNNRNCPKGV-VASLSLGGGYSS----SVNSAAARLQSSGVMVAVA 158
Query: 319 AGNSG--PRPYSIENGAPWITTVGA 341
AGN+ R YS + P + TVGA
Sbjct: 159 AGNNNADARNYSPAS-EPSVCTVGA 182
>pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease
From An Extreme Thermophile, Thermus Aquaticus Yt-1
Length = 276
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 20/106 (18%)
Query: 476 IKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIG 535
+ +T+ T S A FS+ G + D+ APG I AW +
Sbjct: 170 VAEALTVGATTSSDARASFSNYGSCV--------DLFAPGASIPSAWYTSD--------- 212
Query: 536 KLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTA 581
T +GTSM+ PH AG+A L + + A++ SA++ A
Sbjct: 213 ---TATQTLNGTSMATPHVAGVAALYLEQNPSATPASVASAILNGA 255
>pdb|3QFH|A Chain A, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|B Chain B, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|C Chain C, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|D Chain D, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|E Chain E, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|F Chain F, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|G Chain G, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|H Chain H, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus
Length = 447
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 55/141 (39%), Gaps = 32/141 (22%)
Query: 198 GLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIA 257
G + T D D GHGT S + A G IGVAP + MY++
Sbjct: 159 GTEPEETGDVHDVNDRKGHGTMVSGQTS------------ANGKLIGVAPNNKFTMYRVF 206
Query: 258 FYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGF---------------PETTFDENPIA 302
+ K + V + QA DG V+++S+G + +D A
Sbjct: 207 ---GSKKTELLWVSKAIVQAANDGNQVINISVGSYIILDKNDHQTFRKDEKVEYDALQKA 263
Query: 303 IGAFAALKKGIFVACSAGNSG 323
I +A KK I VA AGN G
Sbjct: 264 IN-YAKKKKSIVVAA-AGNDG 282
>pdb|3T41|A Chain A, 1.95 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) S393a
Mutant From Staphylococcus Aureus
pdb|3T41|B Chain B, 1.95 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) S393a
Mutant From Staphylococcus Aureus
Length = 471
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 55/141 (39%), Gaps = 32/141 (22%)
Query: 198 GLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIA 257
G + T D D GHGT S + A G IGVAP + MY++
Sbjct: 183 GTEPEETGDVHDVNDRKGHGTMVSGQTS------------ANGKLIGVAPNNKFTMYRVF 230
Query: 258 FYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGF---------------PETTFDENPIA 302
+ K + V + QA DG V+++S+G + +D A
Sbjct: 231 ---GSKKTELLWVSKAIVQAANDGNQVINISVGSYIILDKNDHQTFRKDEKVEYDALQKA 287
Query: 303 IGAFAALKKGIFVACSAGNSG 323
I +A KK I VA AGN G
Sbjct: 288 IN-YAKKKKSIVVAA-AGNDG 306
>pdb|2AW5|A Chain A, Crystal Structure Of A Human Malic Enzyme
pdb|2AW5|B Chain B, Crystal Structure Of A Human Malic Enzyme
pdb|2AW5|C Chain C, Crystal Structure Of A Human Malic Enzyme
Length = 575
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 17/111 (15%)
Query: 611 NPNKAMDPGLVYDIEVQDYINYLCALNYTSQQIRVLTGTSNFTCEHGNLDLNYPSFIIIL 670
NP+ D + Q I+ L ++ SQ+I+VL NF EH N D + +++++
Sbjct: 32 NPHLNKDLAFTLEERQQLNIHGLLPPSFNSQEIQVLRVVKNF--EHLNSD--FDRYLLLM 87
Query: 671 NNTNTASFTFKRVLTN-------------VAVTRSVYTAVVKAPAGMTVAV 708
+ + F RVLT+ V + Y+ V + P G+ + +
Sbjct: 88 DLQDRNEKLFYRVLTSDIEKFMPIVYTPTVGLACQQYSLVFRKPRGLFITI 138
>pdb|2X8J|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 58/270 (21%), Positives = 100/270 (37%), Gaps = 72/270 (26%)
Query: 113 THTPKFVGLKKHAGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVG 172
+ P V + + +W A+ G+ I+GVID+G + P +
Sbjct: 19 SEVPMGVEIVEAPAVWRASAKGAGQIIGVIDTGCQVDHPDLAE----------------- 61
Query: 173 VEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPR--DFFGHGTHTSSTIAGSRVQ 230
++IG G+ ++T + D D GHGTH + T+A +
Sbjct: 62 ----------RIIG-----------GVNLTTDYGGDETNFSDNNGHGTHVAGTVAAAETG 100
Query: 231 NANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVD------- 283
+ +GVAP A + + K L + + +AI VD
Sbjct: 101 SG---------VVGVAPKADLFIIK------ALSGDGSGEMGWIAKAIRYAVDWRGPKGE 145
Query: 284 ---VMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGP-RPYSIENGAP--WIT 337
++++SLG P D + A+ + V +AGN G R + E P +
Sbjct: 146 QMRIITMSLGGPT---DSEELHDAVKYAVSNNVSVVXAAGNEGDGREDTNEFAYPAAYNE 202
Query: 338 TVGAGTVDREFA-ARVTLGNEELSVIGKSV 366
+ G VD + + T NEE+ ++ V
Sbjct: 203 VIAVGAVDFDLRLSDFTNTNEEIDIVAPGV 232
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 14/52 (26%)
Query: 510 DILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLL 561
DI+APGV I + L + YA SGT+M+ PH AG L+
Sbjct: 226 DIVAPGVGIKSTY--------------LDSGYAELSGTAMAAPHVAGALALI 263
>pdb|4H6X|A Chain A, Structure Of Patellamide Maturation Protease Patg
pdb|4H6X|B Chain B, Structure Of Patellamide Maturation Protease Patg
Length = 357
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 19/83 (22%)
Query: 508 KPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALE-SGTSMSCPHAAGIATLLKATHH 566
K ILAPG +ILGA + TE + +GTSM+ P GI+ LL +
Sbjct: 247 KEGILAPGEEILGA--------------QPCTEEPVRLTGTSMAAPVMTGISALLMSLQV 292
Query: 567 EW----SSAAIRSAMMTTADVLD 585
+ + A+R+A++ TA D
Sbjct: 293 QQGKPVDAEAVRTALLKTAIPCD 315
>pdb|2X8J|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 58/270 (21%), Positives = 100/270 (37%), Gaps = 72/270 (26%)
Query: 113 THTPKFVGLKKHAGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVG 172
+ P V + + +W A+ G+ I+GVID+G + P +
Sbjct: 19 SEVPMGVEIVEAPAVWRASAKGAGQIIGVIDTGXQVDHPDLAE----------------- 61
Query: 173 VEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPR--DFFGHGTHTSSTIAGSRVQ 230
++IG G+ ++T + D D GHGTH + T+A +
Sbjct: 62 ----------RIIG-----------GVNLTTDYGGDETNFSDNNGHGTHVAGTVAAAETG 100
Query: 231 NANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVD------- 283
+ +GVAP A + + K L + + +AI VD
Sbjct: 101 SG---------VVGVAPKADLFIIK------ALSGDGSGEMGWIAKAIRYAVDWRGPKGE 145
Query: 284 ---VMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGP-RPYSIENGAP--WIT 337
++++SLG P D + A+ + V +AGN G R + E P +
Sbjct: 146 QMRIITMSLGGPT---DSEELHDAVKYAVSNNVSVVXAAGNEGDGREDTNEFAYPAAYNE 202
Query: 338 TVGAGTVDREFA-ARVTLGNEELSVIGKSV 366
+ G VD + + T NEE+ ++ V
Sbjct: 203 VIAVGAVDFDLRLSDFTNTNEEIDIVAPGV 232
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 14/52 (26%)
Query: 510 DILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLL 561
DI+APGV I + L + YA SGT+M+ PH AG L+
Sbjct: 226 DIVAPGVGIKSTY--------------LDSGYAELSGTAMAAPHVAGALALI 263
>pdb|4AKT|A Chain A, Patg Macrocyclase In Complex With Peptide
pdb|4AKT|B Chain B, Patg Macrocyclase In Complex With Peptide
Length = 360
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 19/79 (24%)
Query: 508 KPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALE-SGTSMSCPHAAGIATLLKATHH 566
K ILAPG +ILGA + TE + +GTSM+ P GI+ LL +
Sbjct: 265 KEGILAPGEEILGA--------------QPCTEEPVRLTGTSMAAPVMTGISALLMSLQV 310
Query: 567 EW----SSAAIRSAMMTTA 581
+ + A+R+A++ TA
Sbjct: 311 QQGKPVDAEAVRTALLKTA 329
>pdb|1S2N|A Chain A, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1S2N|B Chain B, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|A Chain A, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|B Chain B, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
Length = 284
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 14/56 (25%)
Query: 505 WILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATL 560
W D+ APG I AW D G Y SGTSM+ PH AG+A L
Sbjct: 191 WGSCVDLFAPGSQIKSAWY---------DGG-----YKTISGTSMATPHVAGVAAL 232
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 63/139 (45%), Gaps = 28/139 (20%)
Query: 191 NKGLKQYGLKISTTFDY-----DSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGV 245
N +++G + + +D+ DS D GHGTH + TI GS+ GV
Sbjct: 41 NNNHEEFGGRSVSGYDFVDNDADS-SDCNGHGTHVAGTIGGSQ--------------YGV 85
Query: 246 APMARIAMYKIAFYNDTLKAAAVDVLAGMDQAI--ADGVDVMSLSLGFPETTFDENPIAI 303
A I ++ + + + V++G+D A G V ++SLG ++T ++ +
Sbjct: 86 AKNVNIVGVRVLSCSGSGTTSG--VISGVDWVAQNASGPSVANMSLGGGQSTALDSAVQ- 142
Query: 304 GAFAALKKGIFVACSAGNS 322
A++ G+ +AGNS
Sbjct: 143 ---GAIQSGVSFMLAAGNS 158
>pdb|4AKS|A Chain A, Patg Macrocyclase Domain
pdb|4AKS|B Chain B, Patg Macrocyclase Domain
Length = 360
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 19/79 (24%)
Query: 508 KPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALE-SGTSMSCPHAAGIATLLKATHH 566
K ILAPG +ILGA + TE + +GTSM+ P GI+ LL +
Sbjct: 265 KEGILAPGEEILGA--------------QPCTEEPVRLTGTSMAAPVMTGISALLMSLQV 310
Query: 567 EW----SSAAIRSAMMTTA 581
+ + A+R+A++ TA
Sbjct: 311 QQGKPVDAEAVRTALLKTA 329
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 11/54 (20%)
Query: 510 DILAPGVDILGAWVP--NRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLL 561
D+ APG DIL RP++ Y+ +GTSM+ PH +G+A L+
Sbjct: 245 DLAAPGQDILSTVDSGTRRPVSD---------AYSFMAGTSMATPHVSGVAALV 289
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 11/54 (20%)
Query: 510 DILAPGVDILGAWVP--NRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLL 561
D+ APG DIL RP++ Y+ +GTSM+ PH +G+A L+
Sbjct: 245 DLAAPGQDILSTVDSGTRRPVSD---------AYSFMAGTSMATPHVSGVAALV 289
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 11/54 (20%)
Query: 510 DILAPGVDILGAWVP--NRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLL 561
D+ APG DIL RP++ Y+ +GTSM+ PH +G+A L+
Sbjct: 245 DLAAPGQDILSTVDSGTRRPVSD---------AYSFMAGTSMATPHVSGVAALV 289
>pdb|3F7O|A Chain A, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
pdb|3F7O|B Chain B, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
Length = 284
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 16/77 (20%)
Query: 510 DILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWS 569
DI APG +IL W+ T I SGTSM+ PH G+ L
Sbjct: 203 DIFAPGSNILSTWIG----GTTNTI----------SGTSMATPHIVGLGAYLAGLEGFPG 248
Query: 570 SAAI--RSAMMTTADVL 584
+ A+ R ++T +VL
Sbjct: 249 AQALCKRIQTLSTKNVL 265
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 31/114 (27%)
Query: 212 DFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVL 271
D GHGTH + TI GS+ +G A+ T I Y + +++ + ++
Sbjct: 68 DGNGHGTHCAGTI-GSKT-----YGVAKKTKI----------YGVKVLDNSGSGSYSGII 111
Query: 272 AGMDQAIADG---------VDVMSLSLGFPETTFDENPIAIGAFAALKKGIFVA 316
+GMD A+ D V MSL G ++ D GA A ++ G+F+A
Sbjct: 112 SGMDFAVQDSKSRSCPKGVVANMSLGGGKAQSVND------GAAAMIRAGVFLA 159
>pdb|3LXU|X Chain X, Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp Ii)
Length = 1354
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 543 LESGTSMSCPHAAGIATL----LKATHHEWSSAAIRSAMMTTADVL 584
L +GTS + PH AG L LK + E+S +I+ A+ TA L
Sbjct: 457 LXNGTSXAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKL 502
>pdb|4H6W|A Chain A, Structure Of Prenylagaramide Maturation Protease Paga
pdb|4H6W|B Chain B, Structure Of Prenylagaramide Maturation Protease Paga
Length = 306
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 28/54 (51%), Gaps = 14/54 (25%)
Query: 508 KPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLL 561
K ILAPG DILGA PN TIR SGTS + P +G+A LL
Sbjct: 198 KQGILAPGKDILGAK-PNG--GTIR-----------LSGTSFATPIVSGVAALL 237
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,705,648
Number of Sequences: 62578
Number of extensions: 1093403
Number of successful extensions: 2929
Number of sequences better than 100.0: 108
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 2575
Number of HSP's gapped (non-prelim): 242
length of query: 774
length of database: 14,973,337
effective HSP length: 106
effective length of query: 668
effective length of database: 8,340,069
effective search space: 5571166092
effective search space used: 5571166092
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)