Query 046220
Match_columns 774
No_of_seqs 468 out of 3148
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 09:52:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046220.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046220hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04852 Peptidases_S8_3 Peptid 100.0 2.8E-53 6E-58 456.7 29.7 305 108-582 1-307 (307)
2 PTZ00262 subtilisin-like prote 100.0 5E-50 1.1E-54 447.6 22.8 299 117-622 294-618 (639)
3 cd07479 Peptidases_S8_SKI-1_li 100.0 1.7E-48 3.7E-53 407.0 24.8 244 128-585 1-254 (255)
4 cd07497 Peptidases_S8_14 Pepti 100.0 2.4E-48 5.2E-53 414.8 24.8 287 134-581 1-311 (311)
5 cd05562 Peptidases_S53_like Pe 100.0 2.3E-48 5E-53 408.9 23.4 270 131-617 1-274 (275)
6 cd07475 Peptidases_S8_C5a_Pept 100.0 3.4E-47 7.5E-52 417.0 28.1 313 126-617 1-346 (346)
7 cd07478 Peptidases_S8_CspA-lik 100.0 7E-47 1.5E-51 423.4 24.1 404 132-608 1-455 (455)
8 cd07489 Peptidases_S8_5 Peptid 100.0 3.3E-46 7.1E-51 402.9 26.7 294 125-619 3-300 (312)
9 cd07476 Peptidases_S8_thiazoli 100.0 4.8E-46 1E-50 390.3 25.0 248 127-586 2-254 (267)
10 cd07474 Peptidases_S8_subtilis 100.0 6.8E-45 1.5E-49 390.1 28.8 290 134-615 1-295 (295)
11 cd07483 Peptidases_S8_Subtilis 100.0 3.7E-45 8.1E-50 389.6 25.1 269 135-582 1-291 (291)
12 cd05561 Peptidases_S8_4 Peptid 100.0 7.3E-45 1.6E-49 376.2 23.7 237 137-608 1-239 (239)
13 cd04857 Peptidases_S8_Tripepti 100.0 4.8E-44 1E-48 388.3 28.7 223 211-584 182-412 (412)
14 cd07493 Peptidases_S8_9 Peptid 100.0 2.8E-44 6.2E-49 378.0 24.9 246 136-582 1-261 (261)
15 cd07481 Peptidases_S8_Bacillop 100.0 7.1E-44 1.5E-48 375.5 24.9 247 134-582 1-264 (264)
16 cd07485 Peptidases_S8_Fervidol 100.0 3.1E-43 6.8E-48 372.4 25.2 264 126-580 1-273 (273)
17 KOG1153 Subtilisin-related pro 100.0 5.1E-44 1.1E-48 371.9 18.1 331 28-582 78-461 (501)
18 cd07487 Peptidases_S8_1 Peptid 100.0 1.4E-42 3.1E-47 366.0 26.2 257 134-582 1-264 (264)
19 cd04077 Peptidases_S8_PCSK9_Pr 100.0 4.1E-42 8.8E-47 360.5 24.7 233 127-583 17-255 (255)
20 cd07484 Peptidases_S8_Thermita 100.0 4.6E-42 1E-46 361.2 25.0 242 124-584 18-259 (260)
21 cd04847 Peptidases_S8_Subtilis 100.0 1.7E-42 3.7E-47 370.2 20.3 265 138-582 2-291 (291)
22 cd07496 Peptidases_S8_13 Pepti 100.0 1E-41 2.2E-46 363.2 25.2 207 209-580 66-285 (285)
23 cd07490 Peptidases_S8_6 Peptid 100.0 1.8E-41 3.9E-46 355.6 25.5 253 136-582 1-254 (254)
24 cd07494 Peptidases_S8_10 Pepti 100.0 2.3E-41 4.9E-46 360.4 23.3 154 124-343 10-173 (298)
25 cd04842 Peptidases_S8_Kp43_pro 100.0 9.6E-41 2.1E-45 357.6 24.8 279 130-582 2-293 (293)
26 cd07498 Peptidases_S8_15 Pepti 100.0 8.3E-41 1.8E-45 347.9 23.3 240 137-580 1-242 (242)
27 cd07480 Peptidases_S8_12 Pepti 100.0 1.6E-40 3.5E-45 355.8 25.7 265 129-613 2-296 (297)
28 cd07473 Peptidases_S8_Subtilis 100.0 3.8E-40 8.2E-45 346.6 25.8 252 135-582 2-259 (259)
29 cd04843 Peptidases_S8_11 Pepti 100.0 1.6E-40 3.6E-45 349.8 21.3 244 125-582 5-277 (277)
30 cd07477 Peptidases_S8_Subtilis 100.0 1.3E-39 2.8E-44 336.1 24.2 227 136-580 1-229 (229)
31 cd07482 Peptidases_S8_Lantibio 100.0 1.1E-39 2.3E-44 349.7 23.6 151 136-326 1-159 (294)
32 cd07491 Peptidases_S8_7 Peptid 100.0 6.3E-40 1.4E-44 339.8 20.2 158 134-342 2-169 (247)
33 PF00082 Peptidase_S8: Subtila 100.0 2.3E-40 5E-45 352.6 13.5 274 138-617 1-282 (282)
34 cd07492 Peptidases_S8_8 Peptid 100.0 8.8E-39 1.9E-43 328.2 23.4 222 136-582 1-222 (222)
35 cd04059 Peptidases_S8_Protein_ 100.0 8.4E-39 1.8E-43 343.2 19.3 248 124-582 28-297 (297)
36 cd04848 Peptidases_S8_Autotran 100.0 1.2E-37 2.6E-42 328.8 22.9 243 133-582 1-267 (267)
37 KOG4266 Subtilisin kexin isozy 100.0 1.3E-36 2.9E-41 324.0 25.6 354 30-617 49-465 (1033)
38 KOG1114 Tripeptidyl peptidase 100.0 1.2E-32 2.6E-37 306.1 22.9 240 214-617 310-557 (1304)
39 cd07488 Peptidases_S8_2 Peptid 100.0 3.4E-32 7.3E-37 281.1 16.8 195 210-581 33-247 (247)
40 cd00306 Peptidases_S8_S53 Pept 100.0 1.3E-30 2.8E-35 269.7 24.6 197 209-580 39-241 (241)
41 COG1404 AprE Subtilisin-like s 99.9 3.8E-23 8.1E-28 237.4 22.9 273 125-617 130-420 (508)
42 KOG3526 Subtilisin-like propro 99.9 4.5E-24 9.7E-29 217.2 9.5 153 125-325 151-316 (629)
43 cd04056 Peptidases_S53 Peptida 99.7 4.5E-17 9.8E-22 178.7 13.4 101 241-347 82-199 (361)
44 cd02133 PA_C5a_like PA_C5a_lik 99.2 1.2E-10 2.7E-15 110.6 11.9 115 372-500 24-141 (143)
45 cd02120 PA_subtilisin_like PA_ 99.1 1.1E-09 2.3E-14 101.9 12.0 118 352-475 2-125 (126)
46 PF05922 Inhibitor_I9: Peptida 98.9 1.8E-09 3.9E-14 92.2 6.4 80 32-111 1-82 (82)
47 PF02225 PA: PA domain; Inter 98.6 5E-08 1.1E-12 86.8 6.3 90 374-466 6-101 (101)
48 KOG3525 Subtilisin-like propro 98.6 2.3E-07 4.9E-12 103.1 11.2 157 124-326 22-188 (431)
49 cd04816 PA_SaNapH_like PA_SaNa 98.6 3.5E-07 7.7E-12 84.4 10.6 96 375-474 18-120 (122)
50 cd02122 PA_GRAIL_like PA _GRAI 98.5 7E-07 1.5E-11 83.7 10.8 94 379-475 36-137 (138)
51 cd04818 PA_subtilisin_1 PA_sub 98.5 8.5E-07 1.8E-11 81.4 9.6 85 386-474 26-116 (118)
52 cd02129 PA_hSPPL_like PA_hSPPL 98.5 9.3E-07 2E-11 80.2 9.6 90 374-469 20-115 (120)
53 cd02127 PA_hPAP21_like PA_hPAP 98.5 1E-06 2.2E-11 80.4 9.6 86 387-476 21-116 (118)
54 cd02130 PA_ScAPY_like PA_ScAPY 98.4 4.4E-06 9.5E-11 77.1 12.6 94 374-475 22-121 (122)
55 cd02126 PA_EDEM3_like PA_EDEM3 98.3 2.2E-06 4.8E-11 79.3 9.2 84 387-474 27-124 (126)
56 cd02124 PA_PoS1_like PA_PoS1_l 98.3 6.6E-06 1.4E-10 76.3 12.3 95 376-474 28-127 (129)
57 cd00538 PA PA: Protease-associ 98.3 2.3E-06 5E-11 79.3 9.3 84 387-473 30-123 (126)
58 COG4934 Predicted protease [Po 98.3 9.4E-06 2E-10 97.1 14.7 94 242-341 288-395 (1174)
59 PF06280 DUF1034: Fn3-like dom 98.3 7.6E-06 1.6E-10 74.3 10.5 86 676-765 8-112 (112)
60 cd02132 PA_GO-like PA_GO-like: 98.2 4.5E-06 9.7E-11 78.7 9.2 91 375-474 39-137 (139)
61 cd02125 PA_VSR PA_VSR: Proteas 98.2 6.4E-06 1.4E-10 76.2 9.2 86 387-475 22-126 (127)
62 cd04813 PA_1 PA_1: Protease-as 98.2 6.6E-06 1.4E-10 74.9 8.4 79 386-469 26-112 (117)
63 cd04817 PA_VapT_like PA_VapT_l 98.1 1.1E-05 2.3E-10 75.5 8.2 71 396-469 51-134 (139)
64 cd02123 PA_C_RZF_like PA_C-RZF 98.1 1.4E-05 3.1E-10 76.6 8.7 82 387-471 50-142 (153)
65 cd04819 PA_2 PA_2: Protease-as 97.9 0.00018 4E-09 66.7 13.0 90 372-470 21-121 (127)
66 cd04815 PA_M28_2 PA_M28_2: Pro 96.8 0.0047 1E-07 57.8 8.2 75 397-474 35-132 (134)
67 cd04814 PA_M28_1 PA_M28_1: Pro 96.5 0.0059 1.3E-07 57.3 6.6 62 373-437 19-98 (142)
68 cd04822 PA_M28_1_3 PA_M28_1_3: 96.5 0.019 4.2E-07 54.5 9.6 89 373-464 19-130 (151)
69 cd02128 PA_TfR PA_TfR: Proteas 96.4 0.006 1.3E-07 59.7 6.2 92 373-468 28-155 (183)
70 cd04820 PA_M28_1_1 PA_M28_1_1: 96.4 0.0097 2.1E-07 55.5 7.2 63 373-438 21-95 (137)
71 PF14874 PapD-like: Flagellar- 95.5 0.24 5.3E-06 43.7 12.0 81 676-767 20-100 (102)
72 KOG2442 Uncharacterized conser 95.4 0.046 9.9E-07 59.9 7.9 77 397-476 91-175 (541)
73 PF10633 NPCBM_assoc: NPCBM-as 94.8 0.12 2.6E-06 43.4 7.1 59 676-734 5-64 (78)
74 cd02131 PA_hNAALADL2_like PA_h 93.7 0.12 2.6E-06 48.6 5.3 61 373-438 14-74 (153)
75 cd02121 PA_GCPII_like PA_GCPII 93.0 0.2 4.3E-06 50.8 6.1 61 373-437 44-104 (220)
76 PF11614 FixG_C: IG-like fold 92.6 2.7 5.8E-05 38.2 12.6 58 676-734 31-88 (118)
77 KOG3920 Uncharacterized conser 91.0 0.29 6.3E-06 45.6 4.2 98 375-479 65-174 (193)
78 KOG4628 Predicted E3 ubiquitin 89.7 1.3 2.8E-05 47.7 8.3 80 387-469 62-150 (348)
79 PF00345 PapD_N: Pili and flag 88.0 19 0.0004 32.8 14.0 54 677-732 15-75 (122)
80 cd04821 PA_M28_1_2 PA_M28_1_2: 87.9 1.3 2.8E-05 42.5 6.2 62 374-437 22-101 (157)
81 COG1470 Predicted membrane pro 87.0 6.5 0.00014 43.7 11.5 60 676-735 397-457 (513)
82 PF06030 DUF916: Bacterial pro 86.3 17 0.00038 33.2 12.4 68 676-751 27-118 (121)
83 KOG1114 Tripeptidyl peptidase 82.1 0.95 2.1E-05 53.7 2.7 52 708-768 634-688 (1304)
84 TIGR02745 ccoG_rdxA_fixG cytoc 79.1 11 0.00023 42.7 9.7 56 676-732 346-401 (434)
85 PF00635 Motile_Sperm: MSP (Ma 73.9 25 0.00053 31.0 9.0 54 676-732 18-71 (109)
86 COG1470 Predicted membrane pro 73.7 55 0.0012 36.7 12.9 58 676-734 284-347 (513)
87 PF07718 Coatamer_beta_C: Coat 58.0 83 0.0018 29.5 9.1 67 677-751 70-137 (140)
88 smart00635 BID_2 Bacterial Ig- 53.8 36 0.00078 28.5 5.7 38 705-753 4-41 (81)
89 PF07705 CARDB: CARDB; InterP 51.5 76 0.0016 27.1 7.7 52 676-731 19-72 (101)
90 PF00927 Transglut_C: Transglu 49.1 1E+02 0.0022 27.2 8.1 55 676-732 15-78 (107)
91 PLN03080 Probable beta-xylosid 43.9 54 0.0012 40.1 7.2 84 677-763 685-778 (779)
92 PF07172 GRP: Glycine rich pro 43.4 18 0.00038 31.6 2.2 13 1-14 1-13 (95)
93 PF12690 BsuPI: Intracellular 38.6 1.5E+02 0.0033 25.0 7.1 54 678-732 2-72 (82)
94 PRK15098 beta-D-glucoside gluc 38.6 90 0.0019 38.2 8.0 54 676-732 667-729 (765)
95 PF02845 CUE: CUE domain; Int 36.8 34 0.00073 24.7 2.5 24 558-581 5-28 (42)
96 PF08260 Kinin: Insect kinin p 33.4 20 0.00043 16.4 0.5 6 493-498 3-8 (8)
97 PF04744 Monooxygenase_B: Mono 32.8 1.2E+02 0.0027 33.0 6.8 79 676-758 263-367 (381)
98 PRK13203 ureB urease subunit b 31.4 96 0.0021 27.3 4.7 44 676-727 18-82 (102)
99 PF07610 DUF1573: Protein of u 31.3 1.4E+02 0.003 22.0 5.0 43 682-728 2-45 (45)
100 cd00407 Urease_beta Urease bet 30.6 1.1E+02 0.0024 26.8 5.0 44 676-727 18-82 (101)
101 PRK13202 ureB urease subunit b 30.3 1.1E+02 0.0023 27.0 4.8 42 678-727 21-83 (104)
102 PF14016 DUF4232: Protein of u 30.2 4.3E+02 0.0093 24.2 10.4 56 676-732 18-84 (131)
103 PF05753 TRAP_beta: Translocon 29.7 5.5E+02 0.012 25.3 11.1 55 676-732 38-99 (181)
104 TIGR01451 B_ant_repeat conserv 28.4 2.5E+02 0.0054 21.4 6.2 38 676-715 12-50 (53)
105 PF01345 DUF11: Domain of unkn 28.3 1.3E+02 0.0029 24.5 5.1 31 676-706 41-72 (76)
106 TIGR00192 urease_beta urease, 27.3 1.3E+02 0.0027 26.5 4.7 44 676-727 18-82 (101)
107 PF13940 Ldr_toxin: Toxin Ldr, 26.8 42 0.00091 23.0 1.4 13 549-561 14-26 (35)
108 PRK15019 CsdA-binding activato 26.5 66 0.0014 30.6 3.2 31 544-575 79-109 (147)
109 PF00699 Urease_beta: Urease b 25.6 1.2E+02 0.0026 26.6 4.3 44 676-727 17-81 (100)
110 TIGR03391 FeS_syn_CsdE cystein 25.4 72 0.0016 30.0 3.2 33 543-576 73-105 (138)
111 COG0832 UreB Urea amidohydrola 24.1 2.1E+02 0.0045 25.1 5.4 16 676-691 18-33 (106)
112 PRK13205 ureB urease subunit b 22.8 1.6E+02 0.0035 27.8 4.8 45 676-728 18-83 (162)
113 COG2166 sufE Cysteine desulfur 22.5 82 0.0018 29.7 3.0 25 551-575 80-104 (144)
114 PF04255 DUF433: Protein of un 22.3 75 0.0016 24.6 2.3 39 540-578 10-54 (56)
115 PRK09296 cysteine desufuration 22.2 90 0.0019 29.3 3.2 32 543-575 68-99 (138)
116 smart00546 CUE Domain that may 22.1 1.2E+02 0.0027 21.8 3.3 25 557-581 5-29 (43)
117 PF08821 CGGC: CGGC domain; I 22.0 4E+02 0.0086 23.8 7.1 44 243-291 31-75 (107)
118 PRK13201 ureB urease subunit b 21.9 1.7E+02 0.0036 27.1 4.7 45 676-728 18-83 (136)
119 COG1570 XseA Exonuclease VII, 21.2 2.6E+02 0.0057 31.5 7.0 74 244-323 158-236 (440)
120 PRK15308 putative fimbrial pro 20.4 3.8E+02 0.0082 27.6 7.6 53 677-730 32-100 (234)
121 PF13598 DUF4139: Domain of un 20.3 4.4E+02 0.0095 28.2 8.7 25 744-768 288-315 (317)
122 PF02657 SufE: Fe-S metabolism 20.0 1.1E+02 0.0023 28.2 3.2 33 543-576 59-91 (125)
No 1
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.8e-53 Score=456.74 Aligned_cols=305 Identities=53% Similarity=0.853 Sum_probs=260.9
Q ss_pred eecccCCCCCcccccccCC--CCcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceee
Q 046220 108 GHLHTTHTPKFVGLKKHAG--LWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLI 185 (774)
Q Consensus 108 ~~~~~~~s~~~~g~~~~~~--~w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~ 185 (774)
++++++++++|+++..... +|..+++|+||+|||||||||++||+|.+.+..+++..|.+.|..+..+....||+|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~ 80 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNNKLI 80 (307)
T ss_pred CCccccCCHHHcCCCCCCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCCeEE
Confidence 4688899999999976555 47789999999999999999999999999999999999999999998888788999999
Q ss_pred eeeeccccccccCCcccccCCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCC
Q 046220 186 GARSFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKA 265 (774)
Q Consensus 186 g~~~f~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~ 265 (774)
+.++|.++++.... .+...+..++.|..||||||||||||+...+....|...+.+.||||+|+|+.+|+++..+. +
T Consensus 81 g~~~~~~~~~~~~~-~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~--~ 157 (307)
T cd04852 81 GARYFSDGYDAYGG-FNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGG--C 157 (307)
T ss_pred EEEEcccchhhccC-cccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCC--c
Confidence 99999987654322 12234456778999999999999999987766666666677899999999999999998554 8
Q ss_pred chHHHHHHHHHHHhCCCcEEEECcCCCCCCCCCcHHHHHHHHHHcCCcEEEEccCCCCCCCCCccCCCCceEEecccccC
Q 046220 266 AAVDVLAGMDQAIADGVDVMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVD 345 (774)
Q Consensus 266 ~~~di~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~ 345 (774)
..+++++||++|++++++|||||||......+.+.+..+...+.++|++||+||||+|+...+.++..||+++|||++
T Consensus 158 ~~~~~~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga~~-- 235 (307)
T cd04852 158 FGSDILAAIDQAIADGVDVISYSIGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST-- 235 (307)
T ss_pred cHHHHHHHHHHHHHcCCCEEEeCCCCCCCCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEecc--
Confidence 899999999999999999999999987655567788888889999999999999999988888888999999999720
Q ss_pred cceeEEEEeCCceEEEeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHH
Q 046220 346 REFAARVTLGNEELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVR 425 (774)
Q Consensus 346 ~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~ 425 (774)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCceEEEEecCCCCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCC
Q 046220 426 RTRAAGAIISADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPW 505 (774)
Q Consensus 426 ~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~ 505 (774)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCeeEeCCCceEeecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHcccc
Q 046220 506 ILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTAD 582 (774)
Q Consensus 506 ~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~ 582 (774)
+||||+|||.+|+++++....... .... ..|..++|||||||+|||++|||+|++|+|+|.+||++|++||+
T Consensus 236 -~~~di~apG~~i~~~~~~~~~~~~---~~~~-~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 236 -LKPDIAAPGVDILAAWTPEGADPG---DARG-EDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred -CccceeeccCceeecccCcccccc---CCCC-CcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 477999999999999875311111 1111 68999999999999999999999999999999999999999985
No 2
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=5e-50 Score=447.55 Aligned_cols=299 Identities=21% Similarity=0.191 Sum_probs=213.7
Q ss_pred Ccccccc--cCCCCc--CCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCcee---eeeee
Q 046220 117 KFVGLKK--HAGLWP--AAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKL---IGARS 189 (774)
Q Consensus 117 ~~~g~~~--~~~~w~--~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki---~g~~~ 189 (774)
..|+++. ++.+|+ .+.+|+||+|||||||||++||+|.++-..... ...|+. +++. +++.. +.+++
T Consensus 294 ~qWgLd~i~~~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n~~-el~Grd----giDd--D~nG~vdd~~G~n 366 (639)
T PTZ00262 294 LQWGLDLTRLDETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVNVK-ELHGRK----GIDD--DNNGNVDDEYGAN 366 (639)
T ss_pred cCcCcchhCchHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhcccccc-cccCcc----cccc--ccCCccccccccc
Confidence 3466654 345665 456799999999999999999999864211100 001110 0000 11111 11222
Q ss_pred ccccccccCCcccccCCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHH
Q 046220 190 FNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVD 269 (774)
Q Consensus 190 f~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~d 269 (774)
|+++ ...|.|.+||||||||||||...++.+ +.||||+|+|+++|+++..+. ++.++
T Consensus 367 fVd~-------------~~~P~D~~GHGTHVAGIIAA~gnN~~G--------i~GVAP~AkLi~vKVld~~G~--G~~sd 423 (639)
T PTZ00262 367 FVNN-------------DGGPMDDNYHGTHVSGIISAIGNNNIG--------IVGVDKRSKLIICKALDSHKL--GRLGD 423 (639)
T ss_pred ccCC-------------CCCCCCCCCcchHHHHHHhccccCCCc--------eeeeecccccceEEEecCCCC--ccHHH
Confidence 3221 235688999999999999998654322 589999999999999998776 88999
Q ss_pred HHHHHHHHHhCCCcEEEECcCCCCCCCCCcHHHHHHHHHHcCCcEEEEccCCCCCCCCC--------------ccC----
Q 046220 270 VLAGMDQAIADGVDVMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGPRPYS--------------IEN---- 331 (774)
Q Consensus 270 i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~--------------~~~---- 331 (774)
+++||+||++.|++|||||||+.. +...+..++.+|.++|++||+||||+|..... ++.
T Consensus 424 I~~AI~yA~~~GA~VINmSlG~~~---~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~ 500 (639)
T PTZ00262 424 MFKCFDYCISREAHMINGSFSFDE---YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSK 500 (639)
T ss_pred HHHHHHHHHHCCCCEEEeccccCC---ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhc
Confidence 999999999999999999999752 34567788889999999999999999864321 111
Q ss_pred CCCceEEecccccCcceeEEEEeCCceEEEeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeC
Q 046220 332 GAPWITTVGAGTVDREFAARVTLGNEELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDY 411 (774)
Q Consensus 332 ~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~ 411 (774)
..|++|+|||...+.
T Consensus 501 ~~~nVIaVGAv~~d~----------------------------------------------------------------- 515 (639)
T PTZ00262 501 KLRNVITVSNLIKDK----------------------------------------------------------------- 515 (639)
T ss_pred cCCCEEEEeeccCCC-----------------------------------------------------------------
Confidence 234455555421100
Q ss_pred CCCchhHHHHHHHHhcCceEEEEecCCCCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCcc
Q 046220 412 KGNITVSQQLEEVRRTRAAGAIISADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQV 491 (774)
Q Consensus 412 g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 491 (774)
......
T Consensus 516 --------------------------------------------------------------------------~~~~s~ 521 (639)
T PTZ00262 516 --------------------------------------------------------------------------NNQYSL 521 (639)
T ss_pred --------------------------------------------------------------------------CCcccc
Confidence 001123
Q ss_pred ccccCCCCCCCCCCcccCeeEeCCCceEeecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHH
Q 046220 492 AKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSA 571 (774)
Q Consensus 492 a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~ 571 (774)
+.||++|.. ++||+|||++|+|+++. +.|..++|||||||||||+||||++++|+|+++
T Consensus 522 s~~Snyg~~-------~VDIaAPG~dI~St~p~--------------g~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~ 580 (639)
T PTZ00262 522 SPNSFYSAK-------YCQLAAPGTNIYSTFPK--------------NSYRKLNGTSMAAPHVAAIASLILSINPSLSYE 580 (639)
T ss_pred cccccCCCC-------cceEEeCCCCeeeccCC--------------CceeecCCCchhHHHHHHHHHHHHhhCCCCCHH
Confidence 456666532 34999999999999886 789999999999999999999999999999999
Q ss_pred HHHHHHHccccccccccccccccCCCccCCCcccC-CCccCCCCCCCCCeee
Q 046220 572 AIRSAMMTTADVLDNAYDMIADISTGVAGTPLDFG-AGHINPNKAMDPGLVY 622 (774)
Q Consensus 572 ~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G-~G~vn~~~A~~~glv~ 622 (774)
+|+++|++||.+++.. +..+| .|+||+.+|++..+.+
T Consensus 581 qV~~iL~~TA~~l~~~--------------~n~~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 581 EVIRILKESIVQLPSL--------------KNKVKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred HHHHHHHHhCccCCCC--------------CCccccCcEEcHHHHHHHHHhc
Confidence 9999999999876321 11233 3899999999865544
No 3
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=1.7e-48 Score=406.98 Aligned_cols=244 Identities=28% Similarity=0.403 Sum_probs=198.4
Q ss_pred CcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccccCCC
Q 046220 128 WPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDY 207 (774)
Q Consensus 128 w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~~ 207 (774)
|+++++|+||+|||||||||.+||+|.+. +...+|.. .
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~----------------------------~~~~~~~~--------------~ 38 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNV----------------------------KERTNWTN--------------E 38 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhcc----------------------------ccccccCC--------------C
Confidence 89999999999999999999999999731 00011111 1
Q ss_pred CCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCCCcEEEE
Q 046220 208 DSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSL 287 (774)
Q Consensus 208 ~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~gvdVIn~ 287 (774)
....|..||||||||||+|+.. .+.||||+|+|+.+|++.+.+. +..++++++|+||++++++||||
T Consensus 39 ~~~~d~~gHGT~VAGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~~--~~~~~~~~a~~~a~~~~~~Vin~ 105 (255)
T cd07479 39 KTLDDGLGHGTFVAGVIASSRE-----------QCLGFAPDAEIYIFRVFTNNQV--SYTSWFLDAFNYAILTKIDVLNL 105 (255)
T ss_pred CCCCCCCCcHHHHHHHHHccCC-----------CceeECCCCEEEEEEeecCCCC--chHHHHHHHHHhhhhcCCCEEEe
Confidence 2345778999999999999742 1489999999999999988775 67788999999999999999999
Q ss_pred CcCCCCCCCCCcHHHHHHHHHHcCCcEEEEccCCCCCCCCC--ccCCCCceEEecccccCcceeEEEEeCCceEEEeeee
Q 046220 288 SLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGPRPYS--IENGAPWITTVGAGTVDREFAARVTLGNEELSVIGKS 365 (774)
Q Consensus 288 SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~--~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~g~~ 365 (774)
|||... +...++..++.++.++|++||+||||+|+...+ .+...+++|+|||..
T Consensus 106 S~G~~~--~~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~---------------------- 161 (255)
T cd07479 106 SIGGPD--FMDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGID---------------------- 161 (255)
T ss_pred eccCCC--CCCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeec----------------------
Confidence 999753 334566667778889999999999999975433 455677888888631
Q ss_pred ecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCCCCCC
Q 046220 366 VYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLFPG 445 (774)
Q Consensus 366 ~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~ 445 (774)
T Consensus 162 -------------------------------------------------------------------------------- 161 (255)
T cd07479 162 -------------------------------------------------------------------------------- 161 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCC----CCCcccCeeEeCCCceEee
Q 046220 446 DFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLR----SPWILKPDILAPGVDILGA 521 (774)
Q Consensus 446 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~----~~~~~KPDI~APG~~I~sa 521 (774)
..+.++.|||+|++.. ..+++||||.|||.+|+++
T Consensus 162 -----------------------------------------~~~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~ 200 (255)
T cd07479 162 -----------------------------------------FDDNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGS 200 (255)
T ss_pred -----------------------------------------cCCccccccCCCCCcccccCCCCCcCccEEecCCCeecc
Confidence 1246788999997531 1378899999999999987
Q ss_pred cCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcC----CCCHHHHHHHHHccccccc
Q 046220 522 WVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHH----EWSSAAIRSAMMTTADVLD 585 (774)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P----~~s~~~ik~~L~~TA~~~~ 585 (774)
... +.|..++|||||||||||++|||+|++| .++|++||++|++||++++
T Consensus 201 ~~~--------------~~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 201 KLK--------------GGCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred ccC--------------CCeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 654 6788999999999999999999999999 7999999999999999874
No 4
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.4e-48 Score=414.76 Aligned_cols=287 Identities=28% Similarity=0.308 Sum_probs=191.0
Q ss_pred CCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccccCCCCCCCCC
Q 046220 134 GSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPRDF 213 (774)
Q Consensus 134 G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~~~~~~D~ 213 (774)
|+||+|||||||||++||+|.++... .|.- .|+ +..++....++..+ ....+.|.
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~----~~~~------~~d---~~~~~~~g~d~~~~------------~~~~~~D~ 55 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNF----SWKL------KFD---YKAYLLPGMDKWGG------------FYVIMYDF 55 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCC----Cccc------ccC---cCCCccCCcCCCCC------------ccCCCCCc
Confidence 79999999999999999999743110 0000 000 00011111111111 11246789
Q ss_pred CCCchhhHhhhcccccCCcccccc-ccceeeeecCCceEEEEEEEeeCCCCCCchHHHHH-------HHHHH--HhCCCc
Q 046220 214 FGHGTHTSSTIAGSRVQNANYFGY-AEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLA-------GMDQA--IADGVD 283 (774)
Q Consensus 214 ~gHGThVAgiiaG~~~~~~~~~G~-~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~-------ai~~a--~~~gvd 283 (774)
+||||||||||||......+.+++ ....+.||||+|+|+++|++...+. .....+.+ +++|+ .+++++
T Consensus 56 ~gHGThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 133 (311)
T cd07497 56 FSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDV--IYAWLWTAGFDPVDRKLSWIYTGGPRVD 133 (311)
T ss_pred cccchhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCCc--chhhhhhhccchhhhhhhhhhccCCCce
Confidence 999999999999986543332221 1234699999999999999976543 33333333 34443 367999
Q ss_pred EEEECcCCCCCCCC-----CcHHHHHHHH-HHcCCcEEEEccCCCCCCCC--CccCCCCceEEecccccCcceeEEEEeC
Q 046220 284 VMSLSLGFPETTFD-----ENPIAIGAFA-ALKKGIFVACSAGNSGPRPY--SIENGAPWITTVGAGTVDREFAARVTLG 355 (774)
Q Consensus 284 VIn~SlG~~~~~~~-----~~~~~~a~~~-a~~~Gi~vV~AAGN~G~~~~--~~~~~~p~vitVgA~~~~~~~~~~~~~~ 355 (774)
|||||||.....+. .+..+..... +.++|+++|+||||+|+... ..+..++++|+|||++.....+..
T Consensus 134 VIN~S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~~---- 209 (311)
T cd07497 134 VISNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPFY---- 209 (311)
T ss_pred EEEecCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccchh----
Confidence 99999998543211 1223333322 24799999999999997643 456688999999996422110000
Q ss_pred CceEEEeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEe
Q 046220 356 NEELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIIS 435 (774)
Q Consensus 356 ~g~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~ 435 (774)
..+
T Consensus 210 ------------------------------------------------------~~~----------------------- 212 (311)
T cd07497 210 ------------------------------------------------------LFG----------------------- 212 (311)
T ss_pred ------------------------------------------------------hhc-----------------------
Confidence 000
Q ss_pred cCCCCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCC
Q 046220 436 ADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPG 515 (774)
Q Consensus 436 n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG 515 (774)
......+.++.||||||+.+ +++||||+|||
T Consensus 213 -----------------------------------------------~~~~~~~~~~~fSs~Gp~~~--g~~kPdv~ApG 243 (311)
T cd07497 213 -----------------------------------------------YLPGGSGDVVSWSSRGPSIA--GDPKPDLAAIG 243 (311)
T ss_pred -----------------------------------------------cccCCCCCccccccCCCCcc--cCCCCceeccC
Confidence 00123457899999999987 89999999999
Q ss_pred CceEeecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcC------CCCHHHHHHHHHccc
Q 046220 516 VDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHH------EWSSAAIRSAMMTTA 581 (774)
Q Consensus 516 ~~I~sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P------~~s~~~ik~~L~~TA 581 (774)
++|+++.+....... .. .. ..|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 244 ~~i~s~~~~~~~~~~--~~-~~-~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 244 AFAWAPGRVLDSGGA--LD-GN-EAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred cceEeecccCCCCcc--cC-CC-cceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 999998765322110 01 01 4799999999999999999999999986 689999999999997
No 5
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=2.3e-48 Score=408.92 Aligned_cols=270 Identities=24% Similarity=0.244 Sum_probs=202.9
Q ss_pred CCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccccCCCCCC
Q 046220 131 AGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSP 210 (774)
Q Consensus 131 ~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~~~~~ 210 (774)
+++|+||+|||||||||.+||+|.+...+. +.+...+... ....
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~~-----------------------l~~~~~~~~~-------------~~~~ 44 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASGD-----------------------LPGNVNVLGD-------------LDGG 44 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCCC-----------------------CCcceeeccc-------------cCCC
Confidence 578999999999999999998654321111 1111111110 1234
Q ss_pred CCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCCCcEEEECcC
Q 046220 211 RDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLG 290 (774)
Q Consensus 211 ~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~gvdVIn~SlG 290 (774)
.|..+|||||||||+ ||||+|+|+.+|+. ...+++++||+||+++|++|||||||
T Consensus 45 ~d~~gHGT~vAgii~------------------GvAP~a~l~~~~~~-------~~~~~i~~ai~~a~~~g~~Vin~S~g 99 (275)
T cd05562 45 SGGGDEGRAMLEIIH------------------DIAPGAELAFHTAG-------GGELDFAAAIRALAAAGADIIVDDIG 99 (275)
T ss_pred CCCCchHHHHHHHHh------------------ccCCCCEEEEEecC-------CCHHHHHHHHHHHHHcCCCEEEeccc
Confidence 578899999999993 89999999998863 45789999999999999999999999
Q ss_pred CCCCCC-CCcHHHHHHHHHHcC-CcEEEEccCCCCCCCC-CccCCCCceEEecccccCcceeEEEEeCCceEEEeeeeec
Q 046220 291 FPETTF-DENPIAIGAFAALKK-GIFVACSAGNSGPRPY-SIENGAPWITTVGAGTVDREFAARVTLGNEELSVIGKSVY 367 (774)
Q Consensus 291 ~~~~~~-~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~-~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~g~~~~ 367 (774)
....+. ....+..++.++.++ |++||+||||+|+... ..++..|++|+|||.+.+.......
T Consensus 100 ~~~~~~~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s--------------- 164 (275)
T cd05562 100 YLNEPFFQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGS--------------- 164 (275)
T ss_pred ccCCCcccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccc---------------
Confidence 865443 334677788888887 9999999999998543 4567899999999965332200000
Q ss_pred CCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCCCCCCCC
Q 046220 368 PENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLFPGDF 447 (774)
Q Consensus 368 ~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~ 447 (774)
| .+.
T Consensus 165 ----------------------~--------------------~~~---------------------------------- 168 (275)
T cd05562 165 ----------------------D--------------------PAP---------------------------------- 168 (275)
T ss_pred ----------------------c--------------------ccc----------------------------------
Confidence 0 000
Q ss_pred cccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCC-ceEeecCCCC
Q 046220 448 DMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGV-DILGAWVPNR 526 (774)
Q Consensus 448 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~-~I~sa~~~~~ 526 (774)
.......+.||++||+.+ +.+||||+|||+ ++.+++..
T Consensus 169 -------------------------------------~~~~s~~~~~~~~~p~~~--~~~~~di~Apgg~~~~~~~~~-- 207 (275)
T cd05562 169 -------------------------------------GGTPSSFDPVGIRLPTPE--VRQKPDVTAPDGVNGTVDGDG-- 207 (275)
T ss_pred -------------------------------------CCCcccccCCcccCcCCC--CCcCCeEEcCCcccccCCCcC--
Confidence 000113456788899876 689999999975 44554433
Q ss_pred CCccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHccccccccccccccccCCCccCCCcccC
Q 046220 527 PIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADISTGVAGTPLDFG 606 (774)
Q Consensus 527 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G 606 (774)
+.|..++|||||||||||++|||+|++|+|++++||++|++||+++. .+..+..||
T Consensus 208 ------------~~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~------------~~g~d~~~G 263 (275)
T cd05562 208 ------------DGPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMG------------EPGYDNASG 263 (275)
T ss_pred ------------CceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccC------------CCCCCCCcC
Confidence 68899999999999999999999999999999999999999999873 234456899
Q ss_pred CCccCCCCCCC
Q 046220 607 AGHINPNKAMD 617 (774)
Q Consensus 607 ~G~vn~~~A~~ 617 (774)
||+||+.+|++
T Consensus 264 ~G~vda~~Av~ 274 (275)
T cd05562 264 SGLVDADRAVA 274 (275)
T ss_pred cCcccHHHHhh
Confidence 99999999986
No 6
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=3.4e-47 Score=416.95 Aligned_cols=313 Identities=28% Similarity=0.349 Sum_probs=232.8
Q ss_pred CCCcCCC-CCCccEEEEEcCCCCCCCCCCcCCCCCCCcc-----ccccceecccccCcccCCceeeeeeeccccccccCC
Q 046220 126 GLWPAAG-FGSDVIVGVIDSGVWPESPSFKDDGMPPVPE-----RWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGL 199 (774)
Q Consensus 126 ~~w~~~~-~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~-----~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~ 199 (774)
.+|+++. +|+||+|||||||||++||+|.+....+... .+...+..+ ...+++.+++..++|.++....
T Consensus 1 ~~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-- 75 (346)
T cd07475 1 PLWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIG---YGKYYNEKVPFAYNYADNNDDI-- 75 (346)
T ss_pred ChhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccCC---CCcccccCCCeeEcCCCCCCcc--
Confidence 3788887 9999999999999999999998764432111 111122111 1224677888888887653211
Q ss_pred cccccCCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEee--CCCCCCchHHHHHHHHHH
Q 046220 200 KISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFY--NDTLKAAAVDVLAGMDQA 277 (774)
Q Consensus 200 ~~~~~~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~--~g~~~~~~~di~~ai~~a 277 (774)
....|..+|||||||||+|...+... ...+.||||+|+|+.+|+++. .+. .....++++++++
T Consensus 76 --------~~~~~~~~HGT~vagiiag~~~~~~~-----~~~~~GiAp~a~l~~~~v~~~~~~~~--~~~~~~~~ai~~a 140 (346)
T cd07475 76 --------LDEDDGSSHGMHVAGIVAGNGDEEDN-----GEGIKGVAPEAQLLAMKVFSNPEGGS--TYDDAYAKAIEDA 140 (346)
T ss_pred --------CCCCCCCCcHHHHHHHHhcCCCcccc-----CCceEEeCCCCeEEEEEeecCCCCCC--CCHHHHHHHHHHH
Confidence 11457889999999999998754221 223699999999999999974 343 7788899999999
Q ss_pred HhCCCcEEEECcCCCCCC-CCCcHHHHHHHHHHcCCcEEEEccCCCCCCCCCc----------------cCCCCceEEec
Q 046220 278 IADGVDVMSLSLGFPETT-FDENPIAIGAFAALKKGIFVACSAGNSGPRPYSI----------------ENGAPWITTVG 340 (774)
Q Consensus 278 ~~~gvdVIn~SlG~~~~~-~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~----------------~~~~p~vitVg 340 (774)
++.|++|||||||..... .....+..++.++.++|++||+||||+|...... +...+++|+||
T Consensus 141 ~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vg 220 (346)
T cd07475 141 VKLGADVINMSLGSTAGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVA 220 (346)
T ss_pred HHcCCCEEEECCCcCCCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEe
Confidence 999999999999986532 4456677788889999999999999998653321 12233344444
Q ss_pred ccccCcceeEEEEeCCceEEEeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHH
Q 046220 341 AGTVDREFAARVTLGNEELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQ 420 (774)
Q Consensus 341 A~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~ 420 (774)
+...
T Consensus 221 a~~~---------------------------------------------------------------------------- 224 (346)
T cd07475 221 SANK---------------------------------------------------------------------------- 224 (346)
T ss_pred eccc----------------------------------------------------------------------------
Confidence 3210
Q ss_pred HHHHHhcCceEEEEecCCCCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCC
Q 046220 421 LEEVRRTRAAGAIISADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPS 500 (774)
Q Consensus 421 ~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~ 500 (774)
.......+.++.||+|||+
T Consensus 225 -------------------------------------------------------------~~~~~~~~~~~~~S~~G~~ 243 (346)
T cd07475 225 -------------------------------------------------------------KVPNPNGGQMSGFSSWGPT 243 (346)
T ss_pred -------------------------------------------------------------ccCCCCCCccCCCcCCCCC
Confidence 0001234578899999999
Q ss_pred CCCCCcccCeeEeCCCceEeecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHh----cCCCCHHH----
Q 046220 501 LRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKAT----HHEWSSAA---- 572 (774)
Q Consensus 501 ~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~----~P~~s~~~---- 572 (774)
.. .++||||+|||.+|+++... +.|..++|||||||+|||++|||+|+ +|.|++.+
T Consensus 244 ~~--~~~~pdi~apG~~i~s~~~~--------------~~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ 307 (346)
T cd07475 244 PD--LDLKPDITAPGGNIYSTVND--------------NTYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDL 307 (346)
T ss_pred cc--cCcCCeEEeCCCCeEEecCC--------------CceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHH
Confidence 86 78999999999999998765 67899999999999999999999998 78999876
Q ss_pred HHHHHHccccccccccccccccCCCccCCCcccCCCccCCCCCCC
Q 046220 573 IRSAMMTTADVLDNAYDMIADISTGVAGTPLDFGAGHINPNKAMD 617 (774)
Q Consensus 573 ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 617 (774)
||++|++||.+.... ......+.+.++|+|+||+.+|++
T Consensus 308 ik~~l~~ta~~~~~~------~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 308 VKNLLMNTATPPLDS------EDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred HHHHHHhcCCccccc------CCCCccCCccccCcchhcHHHhhC
Confidence 888999999953211 112456677899999999999985
No 7
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=7e-47 Score=423.44 Aligned_cols=404 Identities=23% Similarity=0.243 Sum_probs=237.8
Q ss_pred CCCCccEEEEEcCCCCCCCCCCcC-CCCCCCccccccceecccccCcccCCceeeeeeecccc-ccccCCcccccCCCCC
Q 046220 132 GFGSDVIVGVIDSGVWPESPSFKD-DGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKG-LKQYGLKISTTFDYDS 209 (774)
Q Consensus 132 ~~G~gVvVgVIDtGid~~Hp~f~d-~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~-~~~~~~~~~~~~~~~~ 209 (774)
.+|+||+|||||||||+.||+|.+ ++.+++...|++....+.. .....+...+.+. .+.. .....+.+...
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~------~~~~~~~~~~~~~~i~~~-~~~~~p~~~~~ 73 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPP------PGGYYGGGEYTEEIINAA-LASDNPYDIVP 73 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCC------CccccCceEEeHHHHHHH-HhcCCccccCc
Confidence 379999999999999999999984 4778899999887654321 1111222222211 0000 00011223345
Q ss_pred CCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCC--------CCchHHHHHHHHHHHhC-
Q 046220 210 PRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTL--------KAAAVDVLAGMDQAIAD- 280 (774)
Q Consensus 210 ~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~--------~~~~~di~~ai~~a~~~- 280 (774)
..|..||||||||||||+..++. .+.||||+|+|+++|++...+.. .+..++++.||+|+++.
T Consensus 74 ~~D~~GHGThvAGIiag~~~~~~--------~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a 145 (455)
T cd07478 74 SRDENGHGTHVAGIAAGNGDNNP--------DFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKA 145 (455)
T ss_pred CCCCCCchHHHHHHHhcCCCCCC--------CccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHH
Confidence 67899999999999999975432 25899999999999999876521 15788999999999974
Q ss_pred ----CCcEEEECcCCCCCC-CCCcHHHHHHHHHHcC-CcEEEEccCCCCCCCCCccCC-----CC--ceEEecccccCcc
Q 046220 281 ----GVDVMSLSLGFPETT-FDENPIAIGAFAALKK-GIFVACSAGNSGPRPYSIENG-----AP--WITTVGAGTVDRE 347 (774)
Q Consensus 281 ----gvdVIn~SlG~~~~~-~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~~~~~~-----~p--~vitVgA~~~~~~ 347 (774)
.+.|||||||...++ ...+.++.++..+..+ |++||+||||+|....+.... .. --+.|+.... .
T Consensus 146 ~~~~~p~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v~~~~~--~ 223 (455)
T cd07478 146 LELNKPLVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGEGEK--G 223 (455)
T ss_pred HHhCCCeEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEECCCCc--c
Confidence 468999999987543 3456777777777665 999999999999755443321 00 1133332111 1
Q ss_pred eeEEEEeC--CceEEEe-----eeeecC-CCC--CCceEeEEEccCCCCcccccCCC-CCCCCcccEEEEEEEeCCCCch
Q 046220 348 FAARVTLG--NEELSVI-----GKSVYP-ENL--FVSREPIYFGYGNRSKEICEGNS-TDPRAVAGKYIFCAFDYKGNIT 416 (774)
Q Consensus 348 ~~~~~~~~--~g~~~~~-----g~~~~~-~~~--~~~~~~l~~~~~~~~~~~c~~~~-~~~~~~~g~iv~~~~~~g~~~~ 416 (774)
+.-.+... +... +. |..... ... ....+.+.+.. ...|.... ..+..-...|.+.
T Consensus 224 ~~~eiW~~~~d~~~-v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~~----t~i~v~y~~~~~~~g~~~i~i~--------- 289 (455)
T cd07478 224 FNLEIWGDFPDRFS-VSIISPSGESSGRINPGIGGSESYKFVFEG----TTVYVYYYLPEPYTGDQLIFIR--------- 289 (455)
T ss_pred eEEEEecCCCCEEE-EEEECCCCCccCccCcCCCcceeEEEEECC----eEEEEEEcCCCCCCCCeEEEEE---------
Confidence 11000000 0000 00 000000 000 00011111110 00111000 0111111112221
Q ss_pred hHHHHHHHHhcCceEEEEecC---CCCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEecee------Eeccc-
Q 046220 417 VSQQLEEVRRTRAAGAIISAD---SRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQIT------ILGTK- 486 (774)
Q Consensus 417 ~~~~~~~~~~~Ga~g~i~~n~---~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~------~~~~~- 486 (774)
..+ ...|.+-+.++.. +|. -..|+|...+...+. .++.+....+ +..+.. +....
T Consensus 290 ----~~~-~~~GiW~i~~~~~~~~~g~----~~~Wlp~~~~~~~~t----~f~~~~~~~t--it~Pa~~~~vitVga~~~ 354 (455)
T cd07478 290 ----FKN-IKPGIWKIRLTGVSITDGR----FDAWLPSRGLLSENT----RFLEPDPYTT--LTIPGTARSVITVGAYNQ 354 (455)
T ss_pred ----ccC-CCccceEEEEEeccCCCce----EEEEecCcCcCCCCC----EeecCCCCce--EecCCCCCCcEEEEEEeC
Confidence 001 1123333333332 111 112333322222111 1222222222 222211 11122
Q ss_pred CCCccccccCCCCCCCCCCcccCeeEeCCCceEeecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhc-
Q 046220 487 PSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATH- 565 (774)
Q Consensus 487 ~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~- 565 (774)
..+.++.||||||+.+ +++||||+|||++|+++++. +.|..++|||||||||||++|||+|++
T Consensus 355 ~~~~~~~~Ss~G~~~~--~~~kpdi~APG~~i~s~~~~--------------~~~~~~sGTS~Aap~vaG~aALl~~~~~ 418 (455)
T cd07478 355 NNNSIAIFSGRGPTRD--GRIKPDIAAPGVNILTASPG--------------GGYTTRSGTSVAAAIVAGACALLLQWGI 418 (455)
T ss_pred CCCcccCccCCCcCCC--CCcCceEEecCCCEEEeecC--------------CcEEeeCcHHHHHHHHHHHHHHHHHhch
Confidence 2356999999999987 89999999999999999886 789999999999999999999999975
Q ss_pred -----CCCCHHHHHHHHHccccccccccccccccCCCccCCCcccCCC
Q 046220 566 -----HEWSSAAIRSAMMTTADVLDNAYDMIADISTGVAGTPLDFGAG 608 (774)
Q Consensus 566 -----P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G 608 (774)
|.|++++||++|++||+++. ...+++.+||||
T Consensus 419 ~~~~~p~~~~~~ik~~L~~tA~~~~-----------~~~~pn~~~GyG 455 (455)
T cd07478 419 VRGNDPYLYGEKIKTYLIRGARRRP-----------GDEYPNPEWGYG 455 (455)
T ss_pred hccCCCCCCHHHHHHHHHHhCccCC-----------CCCCCCCCCCCC
Confidence 56799999999999999874 234667899998
No 8
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.3e-46 Score=402.93 Aligned_cols=294 Identities=31% Similarity=0.401 Sum_probs=228.9
Q ss_pred CCCCcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCccccc
Q 046220 125 AGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTT 204 (774)
Q Consensus 125 ~~~w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~ 204 (774)
+.+|+.+++|+||+|||||+|||++||+|.++-.+ +.++.+.++|..+... ..+..
T Consensus 3 ~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~~---------------------~~~~~~~~d~~~~~~~---~~~~~ 58 (312)
T cd07489 3 DKLHAEGITGKGVKVAVVDTGIDYTHPALGGCFGP---------------------GCKVAGGYDFVGDDYD---GTNPP 58 (312)
T ss_pred hhHHhCCCCCCCCEEEEEECCCCCCChhhhcCCCC---------------------CceeccccccCCcccc---cccCC
Confidence 56899999999999999999999999999854111 1123333334322100 01112
Q ss_pred CCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCCCcE
Q 046220 205 FDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDV 284 (774)
Q Consensus 205 ~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~gvdV 284 (774)
.+...+.|..+|||||||||+|...+ .| +.||||+|+|+.+|+++..+. .....++++|++|++++++|
T Consensus 59 ~~~~~~~d~~gHGT~vAgiia~~~~~----~~-----~~GiAp~a~i~~~~v~~~~~~--~~~~~~~~ai~~a~~~~~~i 127 (312)
T cd07489 59 VPDDDPMDCQGHGTHVAGIIAANPNA----YG-----FTGVAPEATLGAYRVFGCSGS--TTEDTIIAAFLRAYEDGADV 127 (312)
T ss_pred CCCCCCCCCCCcHHHHHHHHhcCCCC----Cc-----eEEECCCCEEEEEEeecCCCC--CCHHHHHHHHHHHHhcCCCE
Confidence 33345677899999999999998654 12 589999999999999987765 67778899999999999999
Q ss_pred EEECcCCCCCCCCCcHHHHHHHHHHcCCcEEEEccCCCCCCCC---CccCCCCceEEecccccCcceeEEEEeCCceEEE
Q 046220 285 MSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGPRPY---SIENGAPWITTVGAGTVDREFAARVTLGNEELSV 361 (774)
Q Consensus 285 In~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~ 361 (774)
||||||.... +..+.+...+.++.++|+++|+||||+|.... ..+...+++|+||+.+
T Consensus 128 In~S~g~~~~-~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~------------------ 188 (312)
T cd07489 128 ITASLGGPSG-WSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD------------------ 188 (312)
T ss_pred EEeCCCcCCC-CCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec------------------
Confidence 9999998643 33467777788888999999999999986532 2345567777777510
Q ss_pred eeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCC
Q 046220 362 IGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQN 441 (774)
Q Consensus 362 ~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~ 441 (774)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCceEee
Q 046220 442 LFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGA 521 (774)
Q Consensus 442 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa 521 (774)
+.||++||+.+ ...||||+|||++++++
T Consensus 189 --------------------------------------------------~~~s~~g~~~~--~~~kpdv~ApG~~i~~~ 216 (312)
T cd07489 189 --------------------------------------------------SYFSSWGPTNE--LYLKPDVAAPGGNILST 216 (312)
T ss_pred --------------------------------------------------CCccCCCCCCC--CCcCccEEcCCCCEEEe
Confidence 56899999987 68999999999999998
Q ss_pred cCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhc-CCCCHHHHHHHHHccccccccccccccccCCCccC
Q 046220 522 WVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATH-HEWSSAAIRSAMMTTADVLDNAYDMIADISTGVAG 600 (774)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~-P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~ 600 (774)
++... +.|..++|||||||+|||++|||+|++ |.+++.+||++|++||.++...+..... ....
T Consensus 217 ~~~~~------------~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~~---~~~~ 281 (312)
T cd07489 217 YPLAG------------GGYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSAL---PDLA 281 (312)
T ss_pred eeCCC------------CceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCccc---cCCC
Confidence 87632 458999999999999999999999999 9999999999999999988654321111 1135
Q ss_pred CCcccCCCccCCCCCCCCC
Q 046220 601 TPLDFGAGHINPNKAMDPG 619 (774)
Q Consensus 601 ~~~~~G~G~vn~~~A~~~g 619 (774)
+..++|||+||+.+|++..
T Consensus 282 ~~~~~G~G~vn~~~a~~~~ 300 (312)
T cd07489 282 PVAQQGAGLVNAYKALYAT 300 (312)
T ss_pred CHhhcCcceeeHHHHhcCC
Confidence 6679999999999999953
No 9
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=4.8e-46 Score=390.32 Aligned_cols=248 Identities=26% Similarity=0.346 Sum_probs=203.0
Q ss_pred CCcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccccCC
Q 046220 127 LWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFD 206 (774)
Q Consensus 127 ~w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~ 206 (774)
+|+.+++|+||+|||||+|||++||+|.+..+.+.. .+.. .
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~~--------------------------~~~~-------------~ 42 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPLF--------------------------TYAA-------------A 42 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCcccccc--------------------------Cccc-------------c
Confidence 799999999999999999999999999854221100 0000 0
Q ss_pred CCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCCCcEEE
Q 046220 207 YDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMS 286 (774)
Q Consensus 207 ~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~gvdVIn 286 (774)
.....|..+|||||||||+|+..+ .+.||||+|+|+.+|++...+.. ++..++++||+||+++|++|||
T Consensus 43 ~~~~~~~~gHGT~VAgii~g~~~~----------~~~GvAp~a~i~~~~v~~~~~~~-~~~~~i~~ai~~a~~~g~~VIN 111 (267)
T cd07476 43 ACQDGGASAHGTHVASLIFGQPCS----------SVEGIAPLCRGLNIPIFAEDRRG-CSQLDLARAINLALEQGAHIIN 111 (267)
T ss_pred CCCCCCCCCcHHHHHHHHhcCCCC----------CceeECcCCeEEEEEEEeCCCCC-CCHHHHHHHHHHHHHCCCCEEE
Confidence 123456789999999999987532 15899999999999999876531 3467899999999999999999
Q ss_pred ECcCCCCC-CCCCcHHHHHHHHHHcCCcEEEEccCCCCCCCCCccCCCCceEEecccccCcceeEEEEeCCceEEEeeee
Q 046220 287 LSLGFPET-TFDENPIAIGAFAALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFAARVTLGNEELSVIGKS 365 (774)
Q Consensus 287 ~SlG~~~~-~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~g~~ 365 (774)
||||.... ......+..++..+.++|++||+||||+|.....+++..|++|+|||..
T Consensus 112 ~S~G~~~~~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~---------------------- 169 (267)
T cd07476 112 ISGGRLTQTGEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMD---------------------- 169 (267)
T ss_pred ecCCcCCCCCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeec----------------------
Confidence 99997542 3345667888888999999999999999988778888899999999732
Q ss_pred ecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCCCCCC
Q 046220 366 VYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLFPG 445 (774)
Q Consensus 366 ~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~ 445 (774)
T Consensus 170 -------------------------------------------------------------------------------- 169 (267)
T cd07476 170 -------------------------------------------------------------------------------- 169 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCceEeecCCC
Q 046220 446 DFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPN 525 (774)
Q Consensus 446 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~ 525 (774)
..+.++.||+||+.. .||||+|||.+|+++.+.
T Consensus 170 -----------------------------------------~~~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~- 202 (267)
T cd07476 170 -----------------------------------------DDGLPLKFSNWGADY-----RKKGILAPGENILGAALG- 202 (267)
T ss_pred -----------------------------------------CCCCeeeecCCCCCC-----CCceEEecCCCceeecCC-
Confidence 112456799999864 378999999999999876
Q ss_pred CCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCC----CCHHHHHHHHHcccccccc
Q 046220 526 RPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHE----WSSAAIRSAMMTTADVLDN 586 (774)
Q Consensus 526 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~----~s~~~ik~~L~~TA~~~~~ 586 (774)
+.|..++|||||||||||++|||+|++|. ++|++||++|++||+++..
T Consensus 203 -------------~~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~ 254 (267)
T cd07476 203 -------------GEVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDP 254 (267)
T ss_pred -------------CCeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCC
Confidence 67999999999999999999999999887 9999999999999999854
No 10
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6.8e-45 Score=390.09 Aligned_cols=290 Identities=39% Similarity=0.541 Sum_probs=218.4
Q ss_pred CCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCC-c-ccccCCCCCCC
Q 046220 134 GSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGL-K-ISTTFDYDSPR 211 (774)
Q Consensus 134 G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~-~-~~~~~~~~~~~ 211 (774)
|+||+|||||+||+++||+|.+.. +.++++...++|......... . ...........
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPG---------------------FPNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAG 59 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCC---------------------CCCCceeeeeECccCCCCcccccccccccccCCCC
Confidence 899999999999999999998531 133445555555443211000 0 00000112345
Q ss_pred CCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCCCcEEEECcCC
Q 046220 212 DFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGF 291 (774)
Q Consensus 212 D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~gvdVIn~SlG~ 291 (774)
|..+|||||||+|+|...+. ..+.|+||+|+|+.+|+++..+. +...+++++|+|+++++++|||||||.
T Consensus 60 ~~~~HGT~vAgiiag~~~n~--------~~~~Giap~a~i~~~~~~~~~~~--~~~~~~~~ai~~a~~~~~~Iin~S~g~ 129 (295)
T cd07474 60 DATGHGTHVAGIIAGNGVNV--------GTIKGVAPKADLYAYKVLGPGGS--GTTDVIIAAIEQAVDDGMDVINLSLGS 129 (295)
T ss_pred CCCCcHHHHHHHHhcCCCcc--------CceEeECCCCeEEEEEeecCCCC--CCHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 68999999999999986442 22589999999999999986555 788999999999999999999999997
Q ss_pred CCCCCCCcHHHHHHHHHHcCCcEEEEccCCCCCCCCCc--cCCCCceEEecccccCcceeEEEEeCCceEEEeeeeecCC
Q 046220 292 PETTFDENPIAIGAFAALKKGIFVACSAGNSGPRPYSI--ENGAPWITTVGAGTVDREFAARVTLGNEELSVIGKSVYPE 369 (774)
Q Consensus 292 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~g~~~~~~ 369 (774)
.... ..+.+..++.++.++|+++|+||||+|...... +...+++|+||++.....
T Consensus 130 ~~~~-~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~~---------------------- 186 (295)
T cd07474 130 SVNG-PDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADV---------------------- 186 (295)
T ss_pred CCCC-CCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccCc----------------------
Confidence 5432 356777888899999999999999998765443 567889999998431000
Q ss_pred CCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCCCCCCCCcc
Q 046220 370 NLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLFPGDFDM 449 (774)
Q Consensus 370 ~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~ 449 (774)
T Consensus 187 -------------------------------------------------------------------------------- 186 (295)
T cd07474 187 -------------------------------------------------------------------------------- 186 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCC-CCCCCCCCcccCeeEeCCCceEeecCCCCCC
Q 046220 450 PFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSR-GPSLRSPWILKPDILAPGVDILGAWVPNRPI 528 (774)
Q Consensus 450 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~-Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~ 528 (774)
........|+++ |+... ..+||||+|||.+|++++....
T Consensus 187 ------------------------------------~~~~~~~~~~s~~~~~~~--~~~kpdv~apG~~i~~~~~~~~-- 226 (295)
T cd07474 187 ------------------------------------AEADTVGPSSSRGPPTSD--SAIKPDIVAPGVDIMSTAPGSG-- 226 (295)
T ss_pred ------------------------------------CCCCceeccCCCCCCCCC--CCcCCCEECCcCceEeeccCCC--
Confidence 011223344554 45543 7899999999999999987631
Q ss_pred ccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHccccccccccccccccCCCccCCCcccCCC
Q 046220 529 ATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADISTGVAGTPLDFGAG 608 (774)
Q Consensus 529 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G 608 (774)
..|..++|||||||+|||++|||+|++|+|++++||++|++||++....+. ...++..+|+|
T Consensus 227 ----------~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~--------~~~~~~~~G~G 288 (295)
T cd07474 227 ----------TGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDG--------VVYPVSRQGAG 288 (295)
T ss_pred ----------CceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCC--------CcCChhccCcc
Confidence 578999999999999999999999999999999999999999998754321 12245689999
Q ss_pred ccCCCCC
Q 046220 609 HINPNKA 615 (774)
Q Consensus 609 ~vn~~~A 615 (774)
+||+.+|
T Consensus 289 ~l~~~~A 295 (295)
T cd07474 289 RVDALRA 295 (295)
T ss_pred eeccccC
Confidence 9999987
No 11
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=3.7e-45 Score=389.55 Aligned_cols=269 Identities=25% Similarity=0.299 Sum_probs=189.8
Q ss_pred CccEEEEEcCCCCCCCCCCcCCCCCCCcc-ccccceecccccCcccCCceeeeeeecccccccc----CCcc------cc
Q 046220 135 SDVIVGVIDSGVWPESPSFKDDGMPPVPE-RWRGACEVGVEFNASHCNRKLIGARSFNKGLKQY----GLKI------ST 203 (774)
Q Consensus 135 ~gVvVgVIDtGid~~Hp~f~d~~~~~~~~-~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~----~~~~------~~ 203 (774)
|+|+|||||||||++||+|+++.+....+ ..+|....+.+|... +++++|...+... +... ..
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~~~~~d~d~ng~~dd------~~g~~f~~~~~~~~~~~~~~~~~~~~~~g 74 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIPGNGIDDDNNGYIDD------VNGWNFLGQYDPRRIVGDDPYDLTEKGYG 74 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccCCCCccCCCCCcccc------ccCeeccCCcccccccccCcccccccccc
Confidence 68999999999999999998752221110 112222222222221 2344444321100 0000 00
Q ss_pred cCCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCCCc
Q 046220 204 TFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVD 283 (774)
Q Consensus 204 ~~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~gvd 283 (774)
..+...+.+..+|||||||||+|...++.+ +.||||+|+|+.+|++.... ....++++||+||+++|++
T Consensus 75 ~~~~~~~~~~~gHGT~VAGiIaa~~~n~~g--------~~GvAp~a~i~~~k~~~~g~---~~~~~i~~Ai~~a~~~g~~ 143 (291)
T cd07483 75 NNDVNGPISDADHGTHVAGIIAAVRDNGIG--------IDGVADNVKIMPLRIVPNGD---ERDKDIANAIRYAVDNGAK 143 (291)
T ss_pred ccccCCCCCCCCcHHHHHHHHhCcCCCCCc--------eEEECCCCEEEEEEEecCCC---cCHHHHHHHHHHHHHCCCc
Confidence 112234557899999999999998654322 58999999999999986544 6778999999999999999
Q ss_pred EEEECcCCCCCCCCCcHHHHHHHHHHcCCcEEEEccCCCCCCCCC---cc--------CCCCceEEecccccCcceeEEE
Q 046220 284 VMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGPRPYS---IE--------NGAPWITTVGAGTVDREFAARV 352 (774)
Q Consensus 284 VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~---~~--------~~~p~vitVgA~~~~~~~~~~~ 352 (774)
|||||||..... ....+..++..+.++|+++|+||||+|..... ++ ...+.+|+|||....
T Consensus 144 IiN~S~G~~~~~-~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~------- 215 (291)
T cd07483 144 VINMSFGKSFSP-NKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKK------- 215 (291)
T ss_pred EEEeCCCCCCCC-ccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeecccc-------
Confidence 999999975322 23456777778899999999999999854221 11 122344444442100
Q ss_pred EeCCceEEEeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEE
Q 046220 353 TLGNEELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGA 432 (774)
Q Consensus 353 ~~~~g~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~ 432 (774)
T Consensus 216 -------------------------------------------------------------------------------- 215 (291)
T cd07483 216 -------------------------------------------------------------------------------- 215 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCCCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeE
Q 046220 433 IISADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDIL 512 (774)
Q Consensus 433 i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~ 512 (774)
.....++.||++|+. +|||.
T Consensus 216 -----------------------------------------------------~~~~~~~~~Sn~G~~-------~vdi~ 235 (291)
T cd07483 216 -----------------------------------------------------YENNLVANFSNYGKK-------NVDVF 235 (291)
T ss_pred -----------------------------------------------------CCcccccccCCCCCC-------ceEEE
Confidence 011246889999974 35999
Q ss_pred eCCCceEeecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHcccc
Q 046220 513 APGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTAD 582 (774)
Q Consensus 513 APG~~I~sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~ 582 (774)
|||.+|+++.+. +.|..++|||||||||||++|||+|++|+|++.|||++|++||+
T Consensus 236 APG~~i~s~~~~--------------~~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 236 APGERIYSTTPD--------------NEYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred eCCCCeEeccCc--------------CCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 999999999775 68999999999999999999999999999999999999999984
No 12
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.3e-45 Score=376.21 Aligned_cols=237 Identities=27% Similarity=0.340 Sum_probs=191.6
Q ss_pred cEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccccCCCCCCCCCCCC
Q 046220 137 VIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPRDFFGH 216 (774)
Q Consensus 137 VvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~~~~~~D~~gH 216 (774)
|+|||||||||++||+|.++. +..+++.. ....|..+|
T Consensus 1 V~VavIDsGvd~~hp~l~~~~---------------------------~~~~~~~~---------------~~~~~~~~H 38 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVV---------------------------IARLFFAG---------------PGAPAPSAH 38 (239)
T ss_pred CEEEEEeCCCCCCCcccccCc---------------------------cccccCCC---------------CCCCCCCCC
Confidence 789999999999999997431 11111110 124567899
Q ss_pred chhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCC-CCCchHHHHHHHHHHHhCCCcEEEECcCCCCCC
Q 046220 217 GTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDT-LKAAAVDVLAGMDQAIADGVDVMSLSLGFPETT 295 (774)
Q Consensus 217 GThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~-~~~~~~di~~ai~~a~~~gvdVIn~SlG~~~~~ 295 (774)
||||||||+|...+. .||||+|+|+.+|++...+. ..++..++++||+||++.|++|||||||...
T Consensus 39 GT~vAgiia~~~~~~-----------~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~-- 105 (239)
T cd05561 39 GTAVASLLAGAGAQR-----------PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPP-- 105 (239)
T ss_pred HHHHHHHHhCCCCCC-----------cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC--
Confidence 999999999985321 69999999999999986431 1167788999999999999999999999742
Q ss_pred CCCcHHHHHHHHHHcCCcEEEEccCCCCCCC-CCccCCCCceEEecccccCcceeEEEEeCCceEEEeeeeecCCCCCCc
Q 046220 296 FDENPIAIGAFAALKKGIFVACSAGNSGPRP-YSIENGAPWITTVGAGTVDREFAARVTLGNEELSVIGKSVYPENLFVS 374 (774)
Q Consensus 296 ~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~ 374 (774)
...+..++.++.++|++||+||||+|+.. ..+++..+++|+|++.+
T Consensus 106 --~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~------------------------------- 152 (239)
T cd05561 106 --NALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVD------------------------------- 152 (239)
T ss_pred --CHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeec-------------------------------
Confidence 34667777889999999999999999753 45667778888888632
Q ss_pred eEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCCCCCCCCcccEEEE
Q 046220 375 REPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLFPGDFDMPFVTV 454 (774)
Q Consensus 375 ~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i 454 (774)
T Consensus 153 -------------------------------------------------------------------------------- 152 (239)
T cd05561 153 -------------------------------------------------------------------------------- 152 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCceEeecCCCCCCccccCC
Q 046220 455 NLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDI 534 (774)
Q Consensus 455 ~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~ 534 (774)
..+.+++||++|+.. ||.|||.+|+++.+.
T Consensus 153 --------------------------------~~~~~~~~s~~g~~~--------di~ApG~~i~~~~~~---------- 182 (239)
T cd05561 153 --------------------------------ARGRLYREANRGAHV--------DFAAPGVDVWVAAPG---------- 182 (239)
T ss_pred --------------------------------CCCCccccCCCCCcc--------eEEccccceecccCC----------
Confidence 123567899999876 999999999997665
Q ss_pred ccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHccccccccccccccccCCCccCCCcccCCC
Q 046220 535 GKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADISTGVAGTPLDFGAG 608 (774)
Q Consensus 535 ~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G 608 (774)
+.|..++|||||||||||++|||+|++| +++++||++|++||+++. .+..+..||||
T Consensus 183 ----~~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g------------~~~~d~~~G~G 239 (239)
T cd05561 183 ----GGYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAATAKDLG------------PPGRDPVFGYG 239 (239)
T ss_pred ----CCEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccC------------CCCcCCCcCCC
Confidence 6899999999999999999999999999 999999999999999873 34555689998
No 13
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=4.8e-44 Score=388.29 Aligned_cols=223 Identities=28% Similarity=0.267 Sum_probs=166.8
Q ss_pred CCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCCCcEEEECcC
Q 046220 211 RDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLG 290 (774)
Q Consensus 211 ~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~gvdVIn~SlG 290 (774)
.|+.+|||||||||||+..++ ..+.||||+|+|+.+|+++......+...++++||++|++.|++|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~~--------~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPEE--------PERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCCC--------CceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 467899999999999985432 225899999999999998754321123467899999999999999999999
Q ss_pred CCCCCCCCcHHHHHHHH-HHcCCcEEEEccCCCCCCCCCcc--C-CCCceEEecccccCcceeEEEEeCCceEEEeeeee
Q 046220 291 FPETTFDENPIAIGAFA-ALKKGIFVACSAGNSGPRPYSIE--N-GAPWITTVGAGTVDREFAARVTLGNEELSVIGKSV 366 (774)
Q Consensus 291 ~~~~~~~~~~~~~a~~~-a~~~Gi~vV~AAGN~G~~~~~~~--~-~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~g~~~ 366 (774)
..........+..++.+ +.++|+++|+||||+|+...++. + ..+.+|+|||..........
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~--------------- 318 (412)
T cd04857 254 EATHWPNSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAE--------------- 318 (412)
T ss_pred cCCCCccchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccccc---------------
Confidence 86432222233334433 45689999999999998766543 2 46899999985321110000
Q ss_pred cCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCCCCCCC
Q 046220 367 YPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLFPGD 446 (774)
Q Consensus 367 ~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~ 446 (774)
| . .
T Consensus 319 -------------y--------------------------~--~------------------------------------ 321 (412)
T cd04857 319 -------------Y--------------------------S--L------------------------------------ 321 (412)
T ss_pred -------------c--------------------------c--c------------------------------------
Confidence 0 0 0
Q ss_pred CcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCceEeecCCCC
Q 046220 447 FDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNR 526 (774)
Q Consensus 447 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~ 526 (774)
.....+.++.||||||+.+ +.+||||+|||+.|.+.-....
T Consensus 322 -------------------------------------~~~~~~~~~~fSSrGP~~d--G~~~pdI~APG~~I~s~p~~~~ 362 (412)
T cd04857 322 -------------------------------------REKLPGNQYTWSSRGPTAD--GALGVSISAPGGAIASVPNWTL 362 (412)
T ss_pred -------------------------------------ccccCCccccccccCCccc--CCcCceEEeCCCcEEEcccCCC
Confidence 0012356889999999997 8999999999999987522111
Q ss_pred CCccccCCccccccceecccccchhHHHHHHHHHHHH----hcCCCCHHHHHHHHHcccccc
Q 046220 527 PIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKA----THHEWSSAAIRSAMMTTADVL 584 (774)
Q Consensus 527 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~P~~s~~~ik~~L~~TA~~~ 584 (774)
..|..|+|||||||||||++|||++ .+|+|+|.+||++|++||+++
T Consensus 363 ------------~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 363 ------------QGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred ------------CCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 5789999999999999999999975 478999999999999999864
No 14
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.8e-44 Score=377.97 Aligned_cols=246 Identities=29% Similarity=0.373 Sum_probs=196.7
Q ss_pred ccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccccCCCCCCCCCCC
Q 046220 136 DVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPRDFFG 215 (774)
Q Consensus 136 gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~~~~~~D~~g 215 (774)
||+||||||||+++||+|....+ .++.++.+.++|.++.. ....|..+
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~--------------------~~~~~i~~~~~~~~~~~------------~~~~~~~~ 48 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHL--------------------FKNLRILGEYDFVDNSN------------NTNYTDDD 48 (261)
T ss_pred CCEEEEEccCCCccCcchhhhcc--------------------ccCCceeeeecCccCCC------------CCCCCCCC
Confidence 79999999999999999952210 13446777777765420 01357889
Q ss_pred CchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCCCcEEEECcCCCCCC
Q 046220 216 HGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPETT 295 (774)
Q Consensus 216 HGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~gvdVIn~SlG~~~~~ 295 (774)
|||||||||+|+.. +.+.||||+|+|+.+|+............+++.|++++.+.|++|||||||.....
T Consensus 49 HGT~vagiia~~~~----------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~ 118 (261)
T cd07493 49 HGTAVLSTMAGYTP----------GVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFD 118 (261)
T ss_pred chhhhheeeeeCCC----------CCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCC
Confidence 99999999999753 22589999999999999765432123556788999999999999999999986432
Q ss_pred CC------------CcHHHHHHHHHHcCCcEEEEccCCCCCC---CCCccCCCCceEEecccccCcceeEEEEeCCceEE
Q 046220 296 FD------------ENPIAIGAFAALKKGIFVACSAGNSGPR---PYSIENGAPWITTVGAGTVDREFAARVTLGNEELS 360 (774)
Q Consensus 296 ~~------------~~~~~~a~~~a~~~Gi~vV~AAGN~G~~---~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~ 360 (774)
.. ...+..++..+.++|+++|+||||+|.. ....+...+++|+|||..
T Consensus 119 ~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~----------------- 181 (261)
T cd07493 119 NPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVD----------------- 181 (261)
T ss_pred CcccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEec-----------------
Confidence 11 2356777888899999999999999977 345667788899998731
Q ss_pred EeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCC
Q 046220 361 VIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQ 440 (774)
Q Consensus 361 ~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 440 (774)
T Consensus 182 -------------------------------------------------------------------------------- 181 (261)
T cd07493 182 -------------------------------------------------------------------------------- 181 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCceEe
Q 046220 441 NLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILG 520 (774)
Q Consensus 441 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~s 520 (774)
..+.++.||++||..+ +++||||+|||.+|++
T Consensus 182 ----------------------------------------------~~~~~~~~S~~G~~~~--~~~~pdi~a~G~~~~~ 213 (261)
T cd07493 182 ----------------------------------------------ANGNKASFSSIGPTAD--GRLKPDVMALGTGIYV 213 (261)
T ss_pred ----------------------------------------------cCCCCCccCCcCCCCC--CCcCCceEecCCCeEE
Confidence 1235678999999886 7999999999999998
Q ss_pred ecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHcccc
Q 046220 521 AWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTAD 582 (774)
Q Consensus 521 a~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~ 582 (774)
.... +.|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 214 ~~~~--------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 214 INGD--------------GNITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred EcCC--------------CcEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 5443 67899999999999999999999999999999999999999985
No 15
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=7.1e-44 Score=375.50 Aligned_cols=247 Identities=34% Similarity=0.396 Sum_probs=194.6
Q ss_pred CCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccccCCCCCCCCC
Q 046220 134 GSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPRDF 213 (774)
Q Consensus 134 G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~~~~~~D~ 213 (774)
|+||+|||||+||+++||+|.+. |++.... .+...+.+.+. ......+.|.
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~--------~~~~~~~-----------~~~~~~~~~d~----------~~~~~~~~d~ 51 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK--------YRGWGGG-----------SADHDYNWFDP----------VGNTPLPYDD 51 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc--------ccccCCC-----------CcccccccccC----------CCCCCCCCCC
Confidence 89999999999999999999864 1110000 00000001110 1112346678
Q ss_pred CCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHh------------CC
Q 046220 214 FGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIA------------DG 281 (774)
Q Consensus 214 ~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~------------~g 281 (774)
.+|||||||||+|..... ...||||+|+|+.+|+++..+ +...+++++++++++ .|
T Consensus 52 ~~HGT~vagii~g~~~~~---------~~~GvAp~a~i~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 119 (264)
T cd07481 52 NGHGTHTMGTMVGNDGDG---------QQIGVAPGARWIACRALDRNG---GNDADYLRCAQWMLAPTDSAGNPADPDLA 119 (264)
T ss_pred CCchhhhhhheeecCCCC---------CceEECCCCeEEEEEeecCCC---CcHHHHHHHHHHHHhcccccccccccccC
Confidence 899999999999875332 137999999999999998777 788999999999975 68
Q ss_pred CcEEEECcCCCCCCCCCcHHHHHHHHHHcCCcEEEEccCCCCCCCC---CccCCCCceEEecccccCcceeEEEEeCCce
Q 046220 282 VDVMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGPRPY---SIENGAPWITTVGAGTVDREFAARVTLGNEE 358 (774)
Q Consensus 282 vdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~ 358 (774)
++|||||||.... ....+..++..+.++|++||+||||++.... ..+...|++|+||+.+
T Consensus 120 ~~Iin~S~G~~~~--~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~--------------- 182 (264)
T cd07481 120 PDVINNSWGGPSG--DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATD--------------- 182 (264)
T ss_pred CeEEEeCCCcCCC--CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecC---------------
Confidence 9999999998643 2345566667788899999999999986543 2556778888888732
Q ss_pred EEEeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCC
Q 046220 359 LSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADS 438 (774)
Q Consensus 359 ~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~ 438 (774)
T Consensus 183 -------------------------------------------------------------------------------- 182 (264)
T cd07481 183 -------------------------------------------------------------------------------- 182 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCce
Q 046220 439 RQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDI 518 (774)
Q Consensus 439 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I 518 (774)
..+.++.||++||... +++||||+|||.+|
T Consensus 183 ------------------------------------------------~~~~~~~~S~~g~~~~--~~~~~dv~ApG~~i 212 (264)
T cd07481 183 ------------------------------------------------RNDVLADFSSRGPSTY--GRIKPDISAPGVNI 212 (264)
T ss_pred ------------------------------------------------CCCCCccccCCCCCCC--CCcCceEEECCCCe
Confidence 1245678999999986 78999999999999
Q ss_pred EeecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCC--CCHHHHHHHHHcccc
Q 046220 519 LGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHE--WSSAAIRSAMMTTAD 582 (774)
Q Consensus 519 ~sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~--~s~~~ik~~L~~TA~ 582 (774)
.++.+. +.|..++|||||||+|||++|||+|++|+ ++++|||++|++||+
T Consensus 213 ~s~~~~--------------~~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 213 RSAVPG--------------GGYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred EEecCC--------------CceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 999876 67899999999999999999999999999 999999999999985
No 16
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=3.1e-43 Score=372.44 Aligned_cols=264 Identities=26% Similarity=0.265 Sum_probs=202.0
Q ss_pred CCCcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccccC
Q 046220 126 GLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTF 205 (774)
Q Consensus 126 ~~w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~ 205 (774)
.+|..+++|+||+|||||||||++||+|.+..... ++ ..+...+.... +...
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~~-------------~~------------~~~~~~~~~~~---~~~~ 52 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGD-------------GY------------DPAVNGYNFVP---NVGD 52 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCCC-------------Cc------------ccccCCccccc---ccCC
Confidence 37999999999999999999999999998651100 00 00001100000 0001
Q ss_pred CCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCCCcEE
Q 046220 206 DYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVM 285 (774)
Q Consensus 206 ~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~gvdVI 285 (774)
......|..||||||||||+|...+....-|.+ .+.|+||+|+|+.+|++...+. ....+++++|++|++.|++||
T Consensus 53 ~~~~~~~~~gHGT~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~--~~~~~~~~ai~~a~~~g~~Vi 128 (273)
T cd07485 53 IDNDVSVGGGHGTHVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYY--VGDDAVAAAIVYAADNGAVIL 128 (273)
T ss_pred cCCCCCCCCCCHHHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCCC--ccHHHHHHHHHHHHHcCCcEE
Confidence 123355778999999999999765433221221 2357999999999999987654 788889999999999999999
Q ss_pred EECcCCCCCCCCCcHHHHHHHHHHcC-------CcEEEEccCCCCCCCCCccCCCCceEEecccccCcceeEEEEeCCce
Q 046220 286 SLSLGFPETTFDENPIAIGAFAALKK-------GIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFAARVTLGNEE 358 (774)
Q Consensus 286 n~SlG~~~~~~~~~~~~~a~~~a~~~-------Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~ 358 (774)
|||||......+...+..++..+.++ |++||+||||++......++..+++|+|++.+
T Consensus 129 n~S~g~~~~~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~--------------- 193 (273)
T cd07485 129 QNSWGGTGGGIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALD--------------- 193 (273)
T ss_pred EecCCCCCccccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEecc---------------
Confidence 99999865444556677777788887 99999999999988777788888999999732
Q ss_pred EEEeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCC
Q 046220 359 LSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADS 438 (774)
Q Consensus 359 ~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~ 438 (774)
T Consensus 194 -------------------------------------------------------------------------------- 193 (273)
T cd07485 194 -------------------------------------------------------------------------------- 193 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCC-c
Q 046220 439 RQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGV-D 517 (774)
Q Consensus 439 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~-~ 517 (774)
..+.++.||++|+.. ||.|||. .
T Consensus 194 ------------------------------------------------~~~~~~~~S~~g~~~--------~i~apG~~~ 217 (273)
T cd07485 194 ------------------------------------------------TNDNKASFSNYGRWV--------DIAAPGVGT 217 (273)
T ss_pred ------------------------------------------------CCCCcCccccCCCce--------EEEeCCCCc
Confidence 123567899999876 9999999 8
Q ss_pred eEeecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCC-CCHHHHHHHHHcc
Q 046220 518 ILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHE-WSSAAIRSAMMTT 580 (774)
Q Consensus 518 I~sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~-~s~~~ik~~L~~T 580 (774)
|+++++..... .. +.|..++|||||||+|||++|||+|++|. ++|+|||++|++|
T Consensus 218 i~~~~~~~~~~-------~~-~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 218 ILSTVPKLDGD-------GG-GNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred cccccccccCC-------CC-CCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 98887653210 01 57899999999999999999999999999 9999999999986
No 17
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-44 Score=371.90 Aligned_cols=331 Identities=25% Similarity=0.384 Sum_probs=257.3
Q ss_pred CCCCeEEEEeCCCCCCCCCcchhHHHHHHhccCCC-C--CC-----------C-CCceEEEec---cceeeEEEEeCHHH
Q 046220 28 GDRKTYIVHMDKAAMPAPFSTHHHWYMSTLSSLSS-P--DG-----------D-APTHLYTYN---HVVDGFSAVLSQTH 89 (774)
Q Consensus 28 ~~~~~yIV~~~~~~~~~~~~~~~~~~~~~l~~~~~-~--~~-----------~-~~~~~~~y~---~~~~g~s~~~~~~~ 89 (774)
..+.+|||.|++....+..+.|.+|.+........ . ++ . -..+.+.|. .+++|..-..+.+-
T Consensus 78 ~~~~~YiV~f~~~~~q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~~ft~~~ 157 (501)
T KOG1153|consen 78 ALPSRYIVVFKPDASQQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTGYFTGES 157 (501)
T ss_pred ccccceEEEeCCCccHHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhccccccccce
Confidence 35689999999766655666777776654332211 1 00 0 011444443 37888888899999
Q ss_pred HHhhcCCCCeEEEEeceeeeccc-----CCCCCcccccccCC-------CCc----CCCCCCccEEEEEcCCCCCCCCCC
Q 046220 90 LKNLQKMPGHHGTYLETFGHLHT-----THTPKFVGLKKHAG-------LWP----AAGFGSDVIVGVIDSGVWPESPSF 153 (774)
Q Consensus 90 ~~~L~~~p~V~~V~~~~~~~~~~-----~~s~~~~g~~~~~~-------~w~----~~~~G~gVvVgVIDtGid~~Hp~f 153 (774)
+..++.+|-++.++++..++... .+....|||.++.. .|- .-..|+||...|+||||+.+||+|
T Consensus 158 v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvtaYv~DTGVni~H~dF 237 (501)
T KOG1153|consen 158 VCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTAYVLDTGVNIEHPDF 237 (501)
T ss_pred eeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEEEEeccccccccccc
Confidence 99999999999999998877654 33344567655321 121 223699999999999999999999
Q ss_pred cCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccccCCCCCCCCCCCCchhhHhhhcccccCCcc
Q 046220 154 KDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPRDFFGHGTHTSSTIAGSRVQNAN 233 (774)
Q Consensus 154 ~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAgiiaG~~~~~~~ 233 (774)
.++ +.| |..+.. .....|++||||||||+|++..
T Consensus 238 egR------a~w------Ga~i~~-----------------------------~~~~~D~nGHGTH~AG~I~sKt----- 271 (501)
T KOG1153|consen 238 EGR------AIW------GATIPP-----------------------------KDGDEDCNGHGTHVAGLIGSKT----- 271 (501)
T ss_pred ccc------eec------ccccCC-----------------------------CCcccccCCCcceeeeeeeccc-----
Confidence 865 223 222110 1235689999999999999884
Q ss_pred ccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhC---------CCcEEEECcCCCCCCCCCcHHHHH
Q 046220 234 YFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIAD---------GVDVMSLSLGFPETTFDENPIAIG 304 (774)
Q Consensus 234 ~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~---------gvdVIn~SlG~~~~~~~~~~~~~a 304 (774)
.|||.+++|+++||++++|. ++.+++++++|++++. +..|.|||+|+. ..-++..|
T Consensus 272 ---------~GvAK~s~lvaVKVl~~dGs--Gt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~----~S~aLn~A 336 (501)
T KOG1153|consen 272 ---------FGVAKNSNLVAVKVLRSDGS--GTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGF----RSAALNMA 336 (501)
T ss_pred ---------cccccccceEEEEEeccCCc--EeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCc----ccHHHHHH
Confidence 79999999999999999998 9999999999999986 468999999995 34567788
Q ss_pred HHHHHcCCcEEEEccCCCCCCC-CCccCCCCceEEecccccCcceeEEEEeCCceEEEeeeeecCCCCCCceEeEEEccC
Q 046220 305 AFAALKKGIFVACSAGNSGPRP-YSIENGAPWITTVGAGTVDREFAARVTLGNEELSVIGKSVYPENLFVSREPIYFGYG 383 (774)
Q Consensus 305 ~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~l~~~~~ 383 (774)
+.+|.+.||++++||||+..+. .+.|+.+..+|||||++.
T Consensus 337 V~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~--------------------------------------- 377 (501)
T KOG1153|consen 337 VNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTK--------------------------------------- 377 (501)
T ss_pred HHHHhhcCeEEEEcCCCcchhhhccCcccccccEEeccccc---------------------------------------
Confidence 8899999999999999998764 467788899999998641
Q ss_pred CCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCCCCCCCCcccEEEEccccHHHHH
Q 046220 384 NRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLFPGDFDMPFVTVNLNNGELVK 463 (774)
Q Consensus 384 ~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~ 463 (774)
T Consensus 378 -------------------------------------------------------------------------------- 377 (501)
T KOG1153|consen 378 -------------------------------------------------------------------------------- 377 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCceEeecCCCCCCccccCCcccccccee
Q 046220 464 KYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYAL 543 (774)
Q Consensus 464 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~~y~~ 543 (774)
.+.+|.||+||++. ||.|||++|+|+|.+.. ....+
T Consensus 378 ------------------------~D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs~------------~at~i 413 (501)
T KOG1153|consen 378 ------------------------NDTIAFFSNWGKCV--------DIFAPGVNILSSWIGSN------------NATAI 413 (501)
T ss_pred ------------------------ccchhhhcCcccee--------eeecCchhhhhhhhcCc------------cchhe
Confidence 24789999999999 99999999999998853 46788
Q ss_pred cccccchhHHHHHHHHHHHHhcCC---------CCHHHHHHHHHcccc
Q 046220 544 ESGTSMSCPHAAGIATLLKATHHE---------WSSAAIRSAMMTTAD 582 (774)
Q Consensus 544 ~sGTSmAaP~VAG~aALl~~~~P~---------~s~~~ik~~L~~TA~ 582 (774)
.||||||+|||||++|..++.+|. .+|.++|..+..-..
T Consensus 414 lSGTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 414 LSGTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred eecccccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhcccc
Confidence 999999999999999999999883 378888887776554
No 18
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.4e-42 Score=366.00 Aligned_cols=257 Identities=32% Similarity=0.483 Sum_probs=203.6
Q ss_pred CCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccccCCCCCCCCC
Q 046220 134 GSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPRDF 213 (774)
Q Consensus 134 G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~~~~~~D~ 213 (774)
|+||+|+|||+||+++||+|.+.... .+.+... ........|.
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~---------------------------~~~~~~~----------~~~~~~~~d~ 43 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR---------------------------FADFVNT----------VNGRTTPYDD 43 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc---------------------------ccccccc----------ccCCCCCCCC
Confidence 89999999999999999999854211 0011110 0112345677
Q ss_pred CCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhC----CCcEEEECc
Q 046220 214 FGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIAD----GVDVMSLSL 289 (774)
Q Consensus 214 ~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~----gvdVIn~Sl 289 (774)
.+|||||||||+|...+. .+.+.||||+|+|+.+|+++..+. ....++++||+|+++. +++||||||
T Consensus 44 ~~HGT~vAgiiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~~~--~~~~~~~~ai~~~~~~~~~~~~~Iin~S~ 114 (264)
T cd07487 44 NGHGTHVAGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDSGS--GSESDIIAGIDWVVENNEKYNIRVVNLSL 114 (264)
T ss_pred CCchHHHHHHHhcCCccc-------CCceEEECCCCeEEEEEeecCCCC--ccHHHHHHHHHHHHhhccccCceEEEecc
Confidence 899999999999986542 122589999999999999998876 7888999999999998 999999999
Q ss_pred CCCCC-CCCCcHHHHHHHHHHcCCcEEEEccCCCCCCCC--CccCCCCceEEecccccCcceeEEEEeCCceEEEeeeee
Q 046220 290 GFPET-TFDENPIAIGAFAALKKGIFVACSAGNSGPRPY--SIENGAPWITTVGAGTVDREFAARVTLGNEELSVIGKSV 366 (774)
Q Consensus 290 G~~~~-~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~--~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~g~~~ 366 (774)
|.... ....+.+..++.++.++|++||+||||++.... ..+...+++|+|||...+..
T Consensus 115 g~~~~~~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~------------------- 175 (264)
T cd07487 115 GAPPDPSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP------------------- 175 (264)
T ss_pred CCCCCCCCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC-------------------
Confidence 98653 445678888888999999999999999998765 55677889999998432111
Q ss_pred cCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCCCCCCC
Q 046220 367 YPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLFPGD 446 (774)
Q Consensus 367 ~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~ 446 (774)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCceEeecCCCC
Q 046220 447 FDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNR 526 (774)
Q Consensus 447 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~ 526 (774)
....++.||++||+.+ +++||||+|||.+|+++.+...
T Consensus 176 ----------------------------------------~~~~~~~~s~~G~~~~--~~~~~di~apG~~i~~~~~~~~ 213 (264)
T cd07487 176 ----------------------------------------HDDGISYFSSRGPTGD--GRIKPDVVAPGENIVSCRSPGG 213 (264)
T ss_pred ----------------------------------------CCccccccccCCCCCC--CCcCCCEEccccceEecccccc
Confidence 0124678999999986 7999999999999999765431
Q ss_pred CCccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHcccc
Q 046220 527 PIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTAD 582 (774)
Q Consensus 527 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~ 582 (774)
... .... +.|..++|||||||+|||++|||+|++|.+++.+||++|++||+
T Consensus 214 ~~~----~~~~-~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 214 NPG----AGVG-SGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred ccC----CCCC-CceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 110 0111 67899999999999999999999999999999999999999985
No 19
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=4.1e-42 Score=360.52 Aligned_cols=233 Identities=33% Similarity=0.477 Sum_probs=194.7
Q ss_pred CCcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccccCC
Q 046220 127 LWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFD 206 (774)
Q Consensus 127 ~w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~ 206 (774)
.|..+++|+||+|||||+||+++||+|.++ +...+.|...
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~---------------------------~~~~~~~~~~------------- 56 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR---------------------------AIWGADFVGG------------- 56 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC---------------------------eeeeeecCCC-------------
Confidence 677789999999999999999999999743 1112222221
Q ss_pred CCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhC-----C
Q 046220 207 YDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIAD-----G 281 (774)
Q Consensus 207 ~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~-----g 281 (774)
....|..+|||||||||+|.. .||||+|+|+.+|+++..+. ...++++++|+++++. +
T Consensus 57 -~~~~d~~~HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~~~--~~~~~~~~ai~~~~~~~~~~~~ 119 (255)
T cd04077 57 -DPDSDCNGHGTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCNGS--GTLSGIIAGLEWVANDATKRGK 119 (255)
T ss_pred -CCCCCCCccHHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCCCC--cCHHHHHHHHHHHHhcccccCC
Confidence 115578899999999999863 69999999999999998765 7888999999999987 4
Q ss_pred CcEEEECcCCCCCCCCCcHHHHHHHHHHcCCcEEEEccCCCCCCC-CCccCCCCceEEecccccCcceeEEEEeCCceEE
Q 046220 282 VDVMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGPRP-YSIENGAPWITTVGAGTVDREFAARVTLGNEELS 360 (774)
Q Consensus 282 vdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~ 360 (774)
++|||||||... ...+..++.++.++|+++|+||||+|... ...++..|++|+||+.+
T Consensus 120 ~~iin~S~g~~~----~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~----------------- 178 (255)
T cd04077 120 PAVANMSLGGGA----STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATD----------------- 178 (255)
T ss_pred CeEEEeCCCCCC----CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccC-----------------
Confidence 899999999864 45667777789999999999999999765 45667788999999742
Q ss_pred EeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCC
Q 046220 361 VIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQ 440 (774)
Q Consensus 361 ~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 440 (774)
T Consensus 179 -------------------------------------------------------------------------------- 178 (255)
T cd04077 179 -------------------------------------------------------------------------------- 178 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCceEe
Q 046220 441 NLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILG 520 (774)
Q Consensus 441 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~s 520 (774)
..+.++.||++||.. ||+|||.+|.+
T Consensus 179 ----------------------------------------------~~~~~~~~S~~g~~~--------~i~apG~~i~~ 204 (255)
T cd04077 179 ----------------------------------------------SDDARASFSNYGSCV--------DIFAPGVDILS 204 (255)
T ss_pred ----------------------------------------------CCCCccCcccCCCCC--------cEEeCCCCeEe
Confidence 113467899999987 89999999999
Q ss_pred ecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHccccc
Q 046220 521 AWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADV 583 (774)
Q Consensus 521 a~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~ 583 (774)
+..... ..|..++|||||||+|||++|||+|++|++++++||++|++||++
T Consensus 205 ~~~~~~------------~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 205 AWIGSD------------TATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred cccCCC------------CcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 876421 688999999999999999999999999999999999999999974
No 20
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=4.6e-42 Score=361.25 Aligned_cols=242 Identities=33% Similarity=0.436 Sum_probs=202.1
Q ss_pred cCCCCcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccc
Q 046220 124 HAGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKIST 203 (774)
Q Consensus 124 ~~~~w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~ 203 (774)
...+|..+ +|+||+|||||+||+++||+|... ++...++|.++
T Consensus 18 ~~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~--------------------------~~~~~~~~~~~---------- 60 (260)
T cd07484 18 APKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV--------------------------KFVLGYDFVDN---------- 60 (260)
T ss_pred hHHHHhhc-CCCCCEEEEEeCCCCCCCcccccC--------------------------CcccceeccCC----------
Confidence 35689888 999999999999999999998422 22222333322
Q ss_pred cCCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCCCc
Q 046220 204 TFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVD 283 (774)
Q Consensus 204 ~~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~gvd 283 (774)
...+.|..+|||||||||++...++. .+.|+||+|+|+.+|+++..+. +...+++++|+++++.|++
T Consensus 61 ---~~~~~d~~~HGT~vagii~~~~~~~~--------~~~Giap~a~l~~~~v~~~~~~--~~~~~~~~ai~~a~~~~~~ 127 (260)
T cd07484 61 ---DSDAMDDNGHGTHVAGIIAAATNNGT--------GVAGVAPKAKIMPVKVLDANGS--GSLADIANGIRYAADKGAK 127 (260)
T ss_pred ---CCCCCCCCCcHHHHHHHHhCccCCCC--------ceEeECCCCEEEEEEEECCCCC--cCHHHHHHHHHHHHHCCCe
Confidence 12356788999999999998754432 2589999999999999987765 7888999999999999999
Q ss_pred EEEECcCCCCCCCCCcHHHHHHHHHHcCCcEEEEccCCCCCCCCCccCCCCceEEecccccCcceeEEEEeCCceEEEee
Q 046220 284 VMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFAARVTLGNEELSVIG 363 (774)
Q Consensus 284 VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~g 363 (774)
|||||||... ....+..++..+.++|++||+||||+|.....+++..+++|+||+.+
T Consensus 128 iin~S~g~~~---~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~-------------------- 184 (260)
T cd07484 128 VINLSLGGGL---GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATD-------------------- 184 (260)
T ss_pred EEEecCCCCC---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeC--------------------
Confidence 9999999863 45567777778889999999999999988888888999999999732
Q ss_pred eeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCCCC
Q 046220 364 KSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLF 443 (774)
Q Consensus 364 ~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~ 443 (774)
T Consensus 185 -------------------------------------------------------------------------------- 184 (260)
T cd07484 185 -------------------------------------------------------------------------------- 184 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCceEeecC
Q 046220 444 PGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWV 523 (774)
Q Consensus 444 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~ 523 (774)
..+..+.||++|+.. |++|||.+|+++.+
T Consensus 185 -------------------------------------------~~~~~~~~s~~g~~~--------~~~apG~~i~~~~~ 213 (260)
T cd07484 185 -------------------------------------------QDDKRASFSNYGKWV--------DVSAPGGGILSTTP 213 (260)
T ss_pred -------------------------------------------CCCCcCCcCCCCCCc--------eEEeCCCCcEeecC
Confidence 113457899999876 99999999999876
Q ss_pred CCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHcccccc
Q 046220 524 PNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVL 584 (774)
Q Consensus 524 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~ 584 (774)
. +.|..++|||||||+|||++||+++++| |++.+||++|++||+++
T Consensus 214 ~--------------~~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 214 D--------------GDYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred C--------------CCEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 5 6789999999999999999999999999 99999999999999875
No 21
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.7e-42 Score=370.22 Aligned_cols=265 Identities=24% Similarity=0.200 Sum_probs=185.5
Q ss_pred EEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccccCCCCCCCCCCCCc
Q 046220 138 IVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPRDFFGHG 217 (774)
Q Consensus 138 vVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~~~~~~D~~gHG 217 (774)
+|||||||||.+||+|.+.- .....+... .....|..|||
T Consensus 2 ~VaviDtGi~~~hp~l~~~~---------------------------~~~~~~~~~-------------~~~~~d~~gHG 41 (291)
T cd04847 2 IVCVLDSGINRGHPLLAPAL---------------------------AEDDLDSDE-------------PGWTADDLGHG 41 (291)
T ss_pred EEEEecCCCCCCChhhhhhh---------------------------ccccccccC-------------CCCcCCCCCCh
Confidence 79999999999999997431 100111100 01156889999
Q ss_pred hhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCC--CCCCchHHHHHHHHHHHhCC---CcEEEECcCCC
Q 046220 218 THTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYND--TLKAAAVDVLAGMDQAIADG---VDVMSLSLGFP 292 (774)
Q Consensus 218 ThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~~~di~~ai~~a~~~g---vdVIn~SlG~~ 292 (774)
|||||||++....+ ....|+||+++|+.+|++...+ .......++++||+|+++.+ ++|||||||..
T Consensus 42 T~vAgiia~~~~~~--------~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~ 113 (291)
T cd04847 42 TAVAGLALYGDLTL--------PGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSP 113 (291)
T ss_pred HHHHHHHHcCcccC--------CCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCC
Confidence 99999999764331 1247999999999999999864 11156778999999999853 59999999986
Q ss_pred CCCCCC--cHHHHHHH-HHHcCCcEEEEccCCCCCCCCC------------ccCCCCceEEecccccCcceeEEEEeCCc
Q 046220 293 ETTFDE--NPIAIGAF-AALKKGIFVACSAGNSGPRPYS------------IENGAPWITTVGAGTVDREFAARVTLGNE 357 (774)
Q Consensus 293 ~~~~~~--~~~~~a~~-~a~~~Gi~vV~AAGN~G~~~~~------------~~~~~p~vitVgA~~~~~~~~~~~~~~~g 357 (774)
...... ..+..++. .+.++|++||+||||+|..... .++.++++|+|||.+.+......
T Consensus 114 ~~~~~~~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~------ 187 (291)
T cd04847 114 LPIDDGRPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDR------ 187 (291)
T ss_pred CCccCCCCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCc------
Confidence 532221 23444443 3568999999999999977543 24567899999986533220000
Q ss_pred eEEEeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecC
Q 046220 358 ELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISAD 437 (774)
Q Consensus 358 ~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~ 437 (774)
. ..+
T Consensus 188 -------------------------------------------------s--~~~------------------------- 191 (291)
T cd04847 188 -------------------------------------------------A--RYS------------------------- 191 (291)
T ss_pred -------------------------------------------------c--ccc-------------------------
Confidence 0 000
Q ss_pred CCCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCc
Q 046220 438 SRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVD 517 (774)
Q Consensus 438 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~ 517 (774)
.......+.||++||... +.+||||+|||++
T Consensus 192 -----------------------------------------------~~~~~~~~~fs~~Gp~~~--~~~KPDl~apG~~ 222 (291)
T cd04847 192 -----------------------------------------------AVGPAPAGATTSSGPGSP--GPIKPDVVAFGGN 222 (291)
T ss_pred -----------------------------------------------ccccccCCCccccCCCCC--CCcCCcEEeeCCc
Confidence 000112334999999986 8999999999999
Q ss_pred eEeecCCCCCCc-----cccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHcccc
Q 046220 518 ILGAWVPNRPIA-----TIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTAD 582 (774)
Q Consensus 518 I~sa~~~~~~~~-----~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~ 582 (774)
|.+......... ........ ..|..++|||||||||||++|||++++|+++|++||++|++||+
T Consensus 223 i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 223 LAYDPSGNAADGDLSLLTTLSSPSG-GGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred eeecCCCCCccCcceeeecccCCCC-CcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 987644211000 00000011 68999999999999999999999999999999999999999985
No 22
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1e-41 Score=363.24 Aligned_cols=207 Identities=28% Similarity=0.329 Sum_probs=167.1
Q ss_pred CCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHH----------
Q 046220 209 SPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAI---------- 278 (774)
Q Consensus 209 ~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~---------- 278 (774)
...+..+|||||||||+|...++.. +.||||+|+|+.+|+++..+ .+.+++++|++|++
T Consensus 66 ~~~~~~~HGT~vAgiiaa~~~~~~~--------~~GvAp~a~i~~~~v~~~~~---~~~~~i~~a~~~a~~~~~~~~~~~ 134 (285)
T cd07496 66 GVSPSSWHGTHVAGTIAAVTNNGVG--------VAGVAWGARILPVRVLGKCG---GTLSDIVDGMRWAAGLPVPGVPVN 134 (285)
T ss_pred CCCCCCCCHHHHHHHHhCcCCCCCC--------ceeecCCCeEEEEEEecCCC---CcHHHHHHHHHHHhccCcCCCccc
Confidence 3556789999999999998653322 48999999999999998887 68899999999998
Q ss_pred hCCCcEEEECcCCCCCCCCCcHHHHHHHHHHcCCcEEEEccCCCCCCC-CCccCCCCceEEecccccCcceeEEEEeCCc
Q 046220 279 ADGVDVMSLSLGFPETTFDENPIAIGAFAALKKGIFVACSAGNSGPRP-YSIENGAPWITTVGAGTVDREFAARVTLGNE 357 (774)
Q Consensus 279 ~~gvdVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g 357 (774)
.++++|||||||..... ...+..++..+.++|++||+||||++... ...+...+++|+|||.+
T Consensus 135 ~~~~~Iin~S~G~~~~~--~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~-------------- 198 (285)
T cd07496 135 PNPAKVINLSLGGDGAC--SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATD-------------- 198 (285)
T ss_pred CCCCeEEEeCCCCCCCC--CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccC--------------
Confidence 45789999999986432 45677788889999999999999999876 56677788999999732
Q ss_pred eEEEeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecC
Q 046220 358 ELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISAD 437 (774)
Q Consensus 358 ~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~ 437 (774)
T Consensus 199 -------------------------------------------------------------------------------- 198 (285)
T cd07496 199 -------------------------------------------------------------------------------- 198 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCc
Q 046220 438 SRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVD 517 (774)
Q Consensus 438 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~ 517 (774)
..+.++.||++||.. ||.|||++
T Consensus 199 -------------------------------------------------~~~~~~~~S~~g~~v--------di~apG~~ 221 (285)
T cd07496 199 -------------------------------------------------LRGQRASYSNYGPAV--------DVSAPGGD 221 (285)
T ss_pred -------------------------------------------------CCCCcccccCCCCCC--------CEEeCCCC
Confidence 123567899999976 99999999
Q ss_pred eEeecCCCCCCc--cccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHcc
Q 046220 518 ILGAWVPNRPIA--TIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTT 580 (774)
Q Consensus 518 I~sa~~~~~~~~--~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~T 580 (774)
|.++........ ........ ..|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 222 i~~~~~~~~~~~~~~~~~~~~~-~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 222 CASDVNGDGYPDSNTGTTSPGG-STYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred ccccCCCCccccccccccCCCC-CceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 998866432110 00000111 578899999999999999999999999999999999999976
No 23
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.8e-41 Score=355.58 Aligned_cols=253 Identities=33% Similarity=0.402 Sum_probs=187.7
Q ss_pred ccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccccCCCCCCCCCCC
Q 046220 136 DVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPRDFFG 215 (774)
Q Consensus 136 gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~~~~~~D~~g 215 (774)
||+|||||||||++||+|.+. +...+.|..+. ..+.....|..+
T Consensus 1 GV~VaviDsGv~~~hp~l~~~---------------------------~~~~~~~~~~~---------~~~~~~~~d~~~ 44 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGR---------------------------VAQWADFDENR---------RISATEVFDAGG 44 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcc---------------------------cCCceeccCCC---------CCCCCCCCCCCC
Confidence 799999999999999999753 11112222110 011234557789
Q ss_pred CchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCCCcEEEECcCCCCCC
Q 046220 216 HGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPETT 295 (774)
Q Consensus 216 HGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~gvdVIn~SlG~~~~~ 295 (774)
|||||||||+|+..+ +...||||+|+|+.+|++...+ +..++++++|+|+++.+++|||||||.....
T Consensus 45 HGT~vAgiia~~~~~---------~~~~GvAp~a~i~~~~v~~~~~---~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~ 112 (254)
T cd07490 45 HGTHVSGTIGGGGAK---------GVYIGVAPEADLLHGKVLDDGG---GSLSQIIAGMEWAVEKDADVVSMSLGGTYYS 112 (254)
T ss_pred cHHHHHHHHhcCCCC---------CCEEEECCCCEEEEEEEecCCC---CcHHHHHHHHHHHHhCCCCEEEECCCcCCCC
Confidence 999999999998642 2247999999999999998876 7889999999999999999999999986533
Q ss_pred CCCcHHHHHHHHHHc-CCcEEEEccCCCCCCCCCccCCCCceEEecccccCcceeEEEEeCCceEEEeeeeecCCCCCCc
Q 046220 296 FDENPIAIGAFAALK-KGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFAARVTLGNEELSVIGKSVYPENLFVS 374 (774)
Q Consensus 296 ~~~~~~~~a~~~a~~-~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~ 374 (774)
.+.+..+.....+ +|++||+||||+|......++..+++|+|||.+.+......
T Consensus 113 --~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~----------------------- 167 (254)
T cd07490 113 --EDPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWF----------------------- 167 (254)
T ss_pred --CcHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCc-----------------------
Confidence 4556555555554 69999999999998877788889999999986432210000
Q ss_pred eEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCCCCCCCCcccEEEE
Q 046220 375 REPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLFPGDFDMPFVTV 454 (774)
Q Consensus 375 ~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i 454 (774)
. .++
T Consensus 168 --------------------------------s--~~g------------------------------------------ 171 (254)
T cd07490 168 --------------------------------S--SFG------------------------------------------ 171 (254)
T ss_pred --------------------------------c--CCc------------------------------------------
Confidence 0 000
Q ss_pred ccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCceEeecCCCCCCccccCC
Q 046220 455 NLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDI 534 (774)
Q Consensus 455 ~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~ 534 (774)
......++.+|... ....||||+|||.+|+++..... ..
T Consensus 172 ----------------------------------~~~~~~~~~~~~~~-~~~~~~d~~apG~~i~~~~~~~~------~~ 210 (254)
T cd07490 172 ----------------------------------SSGASLVSAPDSPP-DEYTKPDVAAPGVDVYSARQGAN------GD 210 (254)
T ss_pred ----------------------------------ccccccccCCCCCc-cCCcCceEEeccCCeEccccCCC------CC
Confidence 00112223333322 25689999999999998652211 01
Q ss_pred ccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHcccc
Q 046220 535 GKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTAD 582 (774)
Q Consensus 535 ~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~ 582 (774)
+.|..++|||||||+|||++|||+|++|+|++.+||++|++||+
T Consensus 211 ----~~~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 211 ----GQYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred ----CCeeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 68999999999999999999999999999999999999999984
No 24
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.3e-41 Score=360.38 Aligned_cols=154 Identities=25% Similarity=0.325 Sum_probs=119.3
Q ss_pred cCCCCcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccc
Q 046220 124 HAGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKIST 203 (774)
Q Consensus 124 ~~~~w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~ 203 (774)
...+|+++++|+||+||||||||+..|| |...++ .+. + .+..+
T Consensus 10 ~~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~-------~~~---------------~----~~~~~---------- 52 (298)
T cd07494 10 ATRVHQRGITGRGVRVAMVDTGFYAHPF-FESRGY-------QVR---------------V----VLAPG---------- 52 (298)
T ss_pred hhHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCc-------cce---------------e----ecCCC----------
Confidence 3678999999999999999999999998 653211 000 0 00000
Q ss_pred cCCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCCCc
Q 046220 204 TFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVD 283 (774)
Q Consensus 204 ~~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~gvd 283 (774)
......|+.|||||||+++ .||||+|+|+.+|++++ ..+++++||+||++++++
T Consensus 53 --~~~~~~D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~------~~~~~~~ai~~a~~~g~d 106 (298)
T cd07494 53 --ATDPACDENGHGTGESANL------------------FAIAPGAQFIGVKLGGP------DLVNSVGAFKKAISLSPD 106 (298)
T ss_pred --CCCCCCCCCCcchheeece------------------eEeCCCCeEEEEEccCC------CcHHHHHHHHHHHhcCCC
Confidence 0123567889999999865 69999999999999863 456789999999999999
Q ss_pred EEEECcCCCCCCC----------CCcHHHHHHHHHHcCCcEEEEccCCCCCCCCCccCCCCceEEecccc
Q 046220 284 VMSLSLGFPETTF----------DENPIAIGAFAALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGT 343 (774)
Q Consensus 284 VIn~SlG~~~~~~----------~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~ 343 (774)
|||||||...... ....+..++.+|.++|++||+||||++. .+++..|++|+|||++
T Consensus 107 VIn~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~ 173 (298)
T cd07494 107 IISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVF 173 (298)
T ss_pred EEEeecccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEe
Confidence 9999999853211 1235777888899999999999999874 5688999999999854
No 25
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=9.6e-41 Score=357.63 Aligned_cols=279 Identities=29% Similarity=0.322 Sum_probs=199.7
Q ss_pred CCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccccCCCCC
Q 046220 130 AAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDS 209 (774)
Q Consensus 130 ~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~~~~ 209 (774)
++++|+||+|||||||||++||+|.+... .+.. ..++++.....+.. .
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~------------~~~~----~~~~~~~~~~~~~~----------------~ 49 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNF------------NKTN----LFHRKIVRYDSLSD----------------T 49 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCc------------CcCc----cCcccEEEeeccCC----------------C
Confidence 57899999999999999999999975421 0000 12233332222211 1
Q ss_pred CCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCCCcEEEECc
Q 046220 210 PRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSL 289 (774)
Q Consensus 210 ~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~gvdVIn~Sl 289 (774)
..|..+|||||||||+|...+... ...+.||||+|+|+.+|+++..+. .....++..+++++.+.+++||||||
T Consensus 50 ~~d~~~HGT~vAgiia~~~~~~~~-----~~~~~GvAp~a~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Vin~S~ 123 (293)
T cd04842 50 KDDVDGHGTHVAGIIAGKGNDSSS-----ISLYKGVAPKAKLYFQDIGDTSGN-LSSPPDLNKLFSPMYDAGARISSNSW 123 (293)
T ss_pred CCCCCCCcchhheeeccCCcCCCc-----ccccccccccCeEEEEEeeccCcc-ccCCccHHHHHHHHHHhCCEEEeccC
Confidence 227899999999999998755421 112589999999999999887652 14566788999999999999999999
Q ss_pred CCCCCCCCCcHHHHHHHHHH-c-CCcEEEEccCCCCCCCC---CccCCCCceEEecccccCcceeEEEEeCCceEEEeee
Q 046220 290 GFPETTFDENPIAIGAFAAL-K-KGIFVACSAGNSGPRPY---SIENGAPWITTVGAGTVDREFAARVTLGNEELSVIGK 364 (774)
Q Consensus 290 G~~~~~~~~~~~~~a~~~a~-~-~Gi~vV~AAGN~G~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~g~ 364 (774)
|......+ .....++.++. + +|++||+||||+|.... ..+...+++|+|||++.+.....
T Consensus 124 G~~~~~~~-~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~-------------- 188 (293)
T cd04842 124 GSPVNNGY-TLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNG-------------- 188 (293)
T ss_pred CCCCcccc-chHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCcccc--------------
Confidence 98754212 22333333332 3 79999999999997764 66778899999998654322000
Q ss_pred eecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCCCCC
Q 046220 365 SVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLFP 444 (774)
Q Consensus 365 ~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~ 444 (774)
..|..
T Consensus 189 -----------------------~~~~~---------------------------------------------------- 193 (293)
T cd04842 189 -----------------------EGGLG---------------------------------------------------- 193 (293)
T ss_pred -----------------------ccccc----------------------------------------------------
Confidence 00000
Q ss_pred CCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCceEeecCC
Q 046220 445 GDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVP 524 (774)
Q Consensus 445 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~ 524 (774)
.......++.||++||... +++||||+|||++|+++...
T Consensus 194 ---------------------------------------~~~~~~~~~~~S~~G~~~~--~~~~pdv~ApG~~i~~~~~~ 232 (293)
T cd04842 194 ---------------------------------------QSDNSDTVASFSSRGPTYD--GRIKPDLVAPGTGILSARSG 232 (293)
T ss_pred ---------------------------------------ccCCCCccccccCcCCCCC--CCcCCCEECCCCCeEeccCC
Confidence 0112356899999999986 79999999999999998754
Q ss_pred CCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcC--------CCCHHHHHHHHHcccc
Q 046220 525 NRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHH--------EWSSAAIRSAMMTTAD 582 (774)
Q Consensus 525 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P--------~~s~~~ik~~L~~TA~ 582 (774)
.... ..... ..|..++|||||||+|||++|||+|++| .+++.+||++|++||+
T Consensus 233 ~~~~----~~~~~-~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 233 GGGI----GDTSD-SAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred CCCC----CCCCh-hheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 2000 00011 5788999999999999999999999854 6667799999999985
No 26
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8.3e-41 Score=347.91 Aligned_cols=240 Identities=29% Similarity=0.324 Sum_probs=188.9
Q ss_pred cEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccccCCCCCCCCCCCC
Q 046220 137 VIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPRDFFGH 216 (774)
Q Consensus 137 VvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~~~~~~D~~gH 216 (774)
|+|||||+||+++||+|.+.. ++...+.+... .....|..+|
T Consensus 1 V~VaviDsGi~~~hp~l~~~~-------------------------~~~~~~~~~~~-------------~~~~~~~~~H 42 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP-------------------------KLVPGWNFVSN-------------NDPTSDIDGH 42 (242)
T ss_pred CEEEEecCCCCCCChhhccCc-------------------------CccCCccccCC-------------CCCCCCCCCC
Confidence 789999999999999998520 01111111111 1135678899
Q ss_pred chhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCCCcEEEECcCCCCC-C
Q 046220 217 GTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPET-T 295 (774)
Q Consensus 217 GThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~gvdVIn~SlG~~~~-~ 295 (774)
||||||||+|+..+.. .+.||||+|+|+.+|+++..+. +...++.++++|+++.+++|||||||.... .
T Consensus 43 GT~vAgiiag~~~~~~--------~~~Gvap~a~i~~~~~~~~~~~--~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~ 112 (242)
T cd07498 43 GTACAGVAAAVGNNGL--------GVAGVAPGAKLMPVRIADSLGY--AYWSDIAQAITWAADNGADVISNSWGGSDSTE 112 (242)
T ss_pred HHHHHHHHHhccCCCc--------eeEeECCCCEEEEEEEECCCCC--ccHHHHHHHHHHHHHCCCeEEEeccCCCCCCc
Confidence 9999999999864322 2589999999999999987764 788999999999999999999999998643 2
Q ss_pred CCCcHHHHHHHHHHc-CCcEEEEccCCCCCCCCCccCCCCceEEecccccCcceeEEEEeCCceEEEeeeeecCCCCCCc
Q 046220 296 FDENPIAIGAFAALK-KGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFAARVTLGNEELSVIGKSVYPENLFVS 374 (774)
Q Consensus 296 ~~~~~~~~a~~~a~~-~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~ 374 (774)
.....+..++..+.+ +|+++|+||||+|......++..+++|+|||.+
T Consensus 113 ~~~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~------------------------------- 161 (242)
T cd07498 113 SISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATD------------------------------- 161 (242)
T ss_pred hHHHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeC-------------------------------
Confidence 335567777777888 999999999999988777788899999999732
Q ss_pred eEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCCCCCCCCcccEEEE
Q 046220 375 REPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLFPGDFDMPFVTV 454 (774)
Q Consensus 375 ~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i 454 (774)
T Consensus 162 -------------------------------------------------------------------------------- 161 (242)
T cd07498 162 -------------------------------------------------------------------------------- 161 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCceEeecCCCCCCccccCC
Q 046220 455 NLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDI 534 (774)
Q Consensus 455 ~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~ 534 (774)
..+.+++||++||.. |++|||.++........... +
T Consensus 162 --------------------------------~~~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~~~----~ 197 (242)
T cd07498 162 --------------------------------SNDARASYSNYGNYV--------DLVAPGVGIWTTGTGRGSAG----D 197 (242)
T ss_pred --------------------------------CCCCccCcCCCCCCe--------EEEeCcCCcccCCccccccc----c
Confidence 113467899999987 99999999988754321110 0
Q ss_pred ccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHcc
Q 046220 535 GKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTT 580 (774)
Q Consensus 535 ~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~T 580 (774)
... +.|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 198 ~~~-~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 198 YPG-GGYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred CCC-CceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 111 678899999999999999999999999999999999999976
No 27
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.6e-40 Score=355.75 Aligned_cols=265 Identities=30% Similarity=0.355 Sum_probs=184.4
Q ss_pred cCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccccCCCC
Q 046220 129 PAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYD 208 (774)
Q Consensus 129 ~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~~~ 208 (774)
..+++|+||+|||||+|||.+||+|.+.. +..++|.+. .
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~~---------------------------~~~~~~~~~--------------~ 40 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGRD---------------------------ITTKSFVGG--------------E 40 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCCc---------------------------ccCcccCCC--------------C
Confidence 35789999999999999999999997531 111222221 1
Q ss_pred CCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCCCcEEEEC
Q 046220 209 SPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLS 288 (774)
Q Consensus 209 ~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~gvdVIn~S 288 (774)
.+.|..||||||||||+|+..++ ...||||+|+|+.+|++...+. +...++++||+||++.|++|||||
T Consensus 41 ~~~d~~gHGT~VAgiiag~~~~~---------~~~GvAp~a~i~~~~~~~~~~~--~~~~~i~~ai~~a~~~g~~Vin~S 109 (297)
T cd07480 41 DVQDGHGHGTHCAGTIFGRDVPG---------PRYGVARGAEIALIGKVLGDGG--GGDGGILAGIQWAVANGADVISMS 109 (297)
T ss_pred CCCCCCCcHHHHHHHHhcccCCC---------cccccCCCCEEEEEEEEeCCCC--CcHHHHHHHHHHHHHcCCCEEEec
Confidence 24678899999999999976442 1379999999999999987665 777889999999999999999999
Q ss_pred cCCCCCCC----------CCcHHHHHHHHH---------------HcCCcEEEEccCCCCCCCCCcc-----CCCCceEE
Q 046220 289 LGFPETTF----------DENPIAIGAFAA---------------LKKGIFVACSAGNSGPRPYSIE-----NGAPWITT 338 (774)
Q Consensus 289 lG~~~~~~----------~~~~~~~a~~~a---------------~~~Gi~vV~AAGN~G~~~~~~~-----~~~p~vit 338 (774)
||...... ....+......+ .++|++||+||||+|....... ...+.+++
T Consensus 110 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~ 189 (297)
T cd07480 110 LGADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMG 189 (297)
T ss_pred cCCCCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccccE
Confidence 99854111 111222222233 6789999999999986433211 01112222
Q ss_pred ecccccCcceeEEEEeCCceEEEeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhH
Q 046220 339 VGAGTVDREFAARVTLGNEELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVS 418 (774)
Q Consensus 339 VgA~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~ 418 (774)
|++.
T Consensus 190 V~~V---------------------------------------------------------------------------- 193 (297)
T cd07480 190 VAAV---------------------------------------------------------------------------- 193 (297)
T ss_pred EEEE----------------------------------------------------------------------------
Confidence 2210
Q ss_pred HHHHHHHhcCceEEEEecCCCCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCC
Q 046220 419 QQLEEVRRTRAAGAIISADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRG 498 (774)
Q Consensus 419 ~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~G 498 (774)
...+....|+++.
T Consensus 194 -------------------------------------------------------------------~~~~~~~~~~~~~ 206 (297)
T cd07480 194 -------------------------------------------------------------------GALGRTGNFSAVA 206 (297)
T ss_pred -------------------------------------------------------------------CCCCCCCCccccC
Confidence 0111222333333
Q ss_pred CCCCCCCcccCeeEeCCCceEeecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 046220 499 PSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMM 578 (774)
Q Consensus 499 p~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~ 578 (774)
+. ...||||+|||.+|+++.+. +.|..++|||||||+|||++|||+|++|.+++.+++.+|+
T Consensus 207 ~~----~~~~~dv~ApG~~i~s~~~~--------------~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~ 268 (297)
T cd07480 207 NF----SNGEVDIAAPGVDIVSAAPG--------------GGYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQ 268 (297)
T ss_pred CC----CCCceEEEeCCCCeEeecCC--------------CcEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHH
Confidence 32 23578999999999998776 7899999999999999999999999999999888888887
Q ss_pred ccccccccccccccccCCCccCCCcccCCCccCCC
Q 046220 579 TTADVLDNAYDMIADISTGVAGTPLDFGAGHINPN 613 (774)
Q Consensus 579 ~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vn~~ 613 (774)
.......... ......+..+|+|++++.
T Consensus 269 ~~l~~~~~~~-------~~~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 269 ARLTAARTTQ-------FAPGLDLPDRGVGLGLAP 296 (297)
T ss_pred HHHhhcccCC-------CCCCCChhhcCCceeecC
Confidence 4322210000 022344568999999875
No 28
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.8e-40 Score=346.58 Aligned_cols=252 Identities=29% Similarity=0.379 Sum_probs=191.0
Q ss_pred CccEEEEEcCCCCCCCCCCcCCCCCCC-ccccccceecccccCcccCCceeeeeeeccccccccCCcccccCCCCCCCCC
Q 046220 135 SDVIVGVIDSGVWPESPSFKDDGMPPV-PERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPRDF 213 (774)
Q Consensus 135 ~gVvVgVIDtGid~~Hp~f~d~~~~~~-~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~~~~~~D~ 213 (774)
+||+|||||||||++||+|.++..... ...+.+....+. .|.+....+ +...+..++.|.
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~----~~~~~~~~~~d~ 62 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDNMWVNPGEIPGNGIDDDGN---------------GYVDDIYGW----NFVNNDNDPMDD 62 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccccccCcccccccCcccCCC---------------CcccCCCcc----cccCCCCCCCCC
Confidence 689999999999999999987522110 000111111111 111110000 001123456788
Q ss_pred CCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCCCcEEEECcCCCC
Q 046220 214 FGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPE 293 (774)
Q Consensus 214 ~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~gvdVIn~SlG~~~ 293 (774)
.+|||||||||+|...++.. +.||||+|+|+.+|++...+. ++..+++++|+++++.+++|||+|||...
T Consensus 63 ~~HGT~va~ii~~~~~~~~~--------~~GvAp~a~l~~~~~~~~~~~--~~~~~~~~a~~~a~~~~~~vin~S~G~~~ 132 (259)
T cd07473 63 NGHGTHVAGIIGAVGNNGIG--------IAGVAWNVKIMPLKFLGADGS--GTTSDAIKAIDYAVDMGAKIINNSWGGGG 132 (259)
T ss_pred CCcHHHHHHHHHCcCCCCCc--------eEEeCCCCEEEEEEEeCCCCC--cCHHHHHHHHHHHHHCCCeEEEeCCCCCC
Confidence 99999999999998654322 589999999999999988775 78899999999999999999999999863
Q ss_pred CCCCCcHHHHHHHHHHcCCcEEEEccCCCCCCC---CCccC--CCCceEEecccccCcceeEEEEeCCceEEEeeeeecC
Q 046220 294 TTFDENPIAIGAFAALKKGIFVACSAGNSGPRP---YSIEN--GAPWITTVGAGTVDREFAARVTLGNEELSVIGKSVYP 368 (774)
Q Consensus 294 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~---~~~~~--~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~g~~~~~ 368 (774)
. ...+..++.++.++|++||+||||+|... ..++. ..+++|+||+.+
T Consensus 133 ~---~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~------------------------- 184 (259)
T cd07473 133 P---SQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATD------------------------- 184 (259)
T ss_pred C---CHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecC-------------------------
Confidence 3 56777788889999999999999998762 23333 346777777632
Q ss_pred CCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCCCCCCCCc
Q 046220 369 ENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLFPGDFD 448 (774)
Q Consensus 369 ~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~ 448 (774)
T Consensus 185 -------------------------------------------------------------------------------- 184 (259)
T cd07473 185 -------------------------------------------------------------------------------- 184 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCceEeecCCCCCC
Q 046220 449 MPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPI 528 (774)
Q Consensus 449 ~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~ 528 (774)
..+.++.||++||. +||+.|||.++++..+.
T Consensus 185 --------------------------------------~~~~~~~~s~~g~~-------~~~~~apG~~~~~~~~~---- 215 (259)
T cd07473 185 --------------------------------------SNDALASFSNYGKK-------TVDLAAPGVDILSTSPG---- 215 (259)
T ss_pred --------------------------------------CCCCcCcccCCCCC-------CcEEEeccCCeEeccCC----
Confidence 12345679999986 35999999999997654
Q ss_pred ccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHcccc
Q 046220 529 ATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTAD 582 (774)
Q Consensus 529 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~ 582 (774)
+.|..++|||||||+|||++|||+|++|.+++++||++|++||+
T Consensus 216 ----------~~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 216 ----------GGYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred ----------CcEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 68999999999999999999999999999999999999999985
No 29
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.6e-40 Score=349.77 Aligned_cols=244 Identities=20% Similarity=0.200 Sum_probs=173.1
Q ss_pred CCCCcCCC-CCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccc
Q 046220 125 AGLWPAAG-FGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKIST 203 (774)
Q Consensus 125 ~~~w~~~~-~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~ 203 (774)
..+|+... .|+||+|+|||+|||.+||+|.++... +..+
T Consensus 5 ~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~------------------------------~~~~---------- 44 (277)
T cd04843 5 RYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGIT------------------------------LISG---------- 44 (277)
T ss_pred HHHHHhcCCCCCcEEEEEecCCCCCCChhhcccccc------------------------------ccCC----------
Confidence 45787744 589999999999999999999854110 0000
Q ss_pred cCCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHh----
Q 046220 204 TFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIA---- 279 (774)
Q Consensus 204 ~~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~---- 279 (774)
..+.|+.+|||||||||||..+ + +| +.||||+|+|+.+|+++ .++++++|.+|++
T Consensus 45 ----~~~~d~~gHGT~VAGiIaa~~n-~---~G-----~~GvAp~a~l~~i~v~~--------~~~~~~ai~~A~~~~~~ 103 (277)
T cd04843 45 ----LTDQADSDHGTAVLGIIVAKDN-G---IG-----VTGIAHGAQAAVVSSTR--------VSNTADAILDAADYLSP 103 (277)
T ss_pred ----CCCCCCCCCcchhheeeeeecC-C---Cc-----eeeeccCCEEEEEEecC--------CCCHHHHHHHHHhccCC
Confidence 1145778999999999999632 1 12 48999999999999975 2345566666665
Q ss_pred CCCcEEEECcCCCCCCC------CCcHHHHHHHHHHcCCcEEEEccCCCCCCCCCcc-------------CCCCceEEec
Q 046220 280 DGVDVMSLSLGFPETTF------DENPIAIGAFAALKKGIFVACSAGNSGPRPYSIE-------------NGAPWITTVG 340 (774)
Q Consensus 280 ~gvdVIn~SlG~~~~~~------~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~-------------~~~p~vitVg 340 (774)
.++.+||||||...... ....+..++.++.++|+++|+||||++....... ...|++|+||
T Consensus 104 ~~v~~in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~Vg 183 (277)
T cd04843 104 GDVILLEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVG 183 (277)
T ss_pred CCEEEEEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEE
Confidence 45678999999864211 2334556777888999999999999986421110 1123455555
Q ss_pred ccccCcceeEEEEeCCceEEEeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHH
Q 046220 341 AGTVDREFAARVTLGNEELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQ 420 (774)
Q Consensus 341 A~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~ 420 (774)
|++.+
T Consensus 184 A~~~~--------------------------------------------------------------------------- 188 (277)
T cd04843 184 AGSST--------------------------------------------------------------------------- 188 (277)
T ss_pred eccCC---------------------------------------------------------------------------
Confidence 52110
Q ss_pred HHHHHhcCceEEEEecCCCCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCC
Q 046220 421 LEEVRRTRAAGAIISADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPS 500 (774)
Q Consensus 421 ~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~ 500 (774)
....++.||++||.
T Consensus 189 ------------------------------------------------------------------~~~~~~~fSn~G~~ 202 (277)
T cd04843 189 ------------------------------------------------------------------TGHTRLAFSNYGSR 202 (277)
T ss_pred ------------------------------------------------------------------CCCccccccCCCCc
Confidence 01136899999997
Q ss_pred CCCCCcccCeeEeCCCceEeecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHH----h-cCCCCHHHHHH
Q 046220 501 LRSPWILKPDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKA----T-HHEWSSAAIRS 575 (774)
Q Consensus 501 ~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~-~P~~s~~~ik~ 575 (774)
. ||.|||++|+++............. ..|..++|||||||||||++|||++ + +|+|+++|||+
T Consensus 203 v--------di~APG~~i~s~~~~~~~~~~~~~~----~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~ 270 (277)
T cd04843 203 V--------DVYGWGENVTTTGYGDLQDLGGENQ----DYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRE 270 (277)
T ss_pred c--------ceEcCCCCeEecCCCCcccccCCCC----cceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHH
Confidence 6 9999999999998753311000001 3457899999999999999999975 3 49999999999
Q ss_pred HHHcccc
Q 046220 576 AMMTTAD 582 (774)
Q Consensus 576 ~L~~TA~ 582 (774)
+|+.|++
T Consensus 271 ~L~~t~~ 277 (277)
T cd04843 271 LLTATGT 277 (277)
T ss_pred HHHhcCC
Confidence 9999974
No 30
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=1.3e-39 Score=336.06 Aligned_cols=227 Identities=36% Similarity=0.535 Sum_probs=187.0
Q ss_pred ccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccccCCCCCCCCCCC
Q 046220 136 DVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPRDFFG 215 (774)
Q Consensus 136 gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~~~~~~D~~g 215 (774)
||+|||||+||+++||+|.+. +...+.|.... .....|..+
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~---------------------------~~~~~~~~~~~------------~~~~~~~~~ 41 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN---------------------------IVGGANFTGDD------------NNDYQDGNG 41 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc---------------------------ccCcccccCCC------------CCCCCCCCC
Confidence 799999999999999999753 11122222210 023557889
Q ss_pred CchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCCCcEEEECcCCCCCC
Q 046220 216 HGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPETT 295 (774)
Q Consensus 216 HGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~gvdVIn~SlG~~~~~ 295 (774)
|||||||||++..... .+.|+||+|+|+.+|+++..+. +...+++++++++++.|++|||||||...
T Consensus 42 HGT~vA~ii~~~~~~~---------~~~giap~a~i~~~~~~~~~~~--~~~~~l~~ai~~a~~~~~~Vin~S~g~~~-- 108 (229)
T cd07477 42 HGTHVAGIIAALDNGV---------GVVGVAPEADLYAVKVLNDDGS--GTYSDIIAGIEWAIENGMDIINMSLGGPS-- 108 (229)
T ss_pred CHHHHHHHHhcccCCC---------ccEeeCCCCEEEEEEEECCCCC--cCHHHHHHHHHHHHHCCCCEEEECCccCC--
Confidence 9999999999976432 2589999999999999988775 67789999999999999999999999853
Q ss_pred CCCcHHHHHHHHHHcCCcEEEEccCCCCCCCCCc--cCCCCceEEecccccCcceeEEEEeCCceEEEeeeeecCCCCCC
Q 046220 296 FDENPIAIGAFAALKKGIFVACSAGNSGPRPYSI--ENGAPWITTVGAGTVDREFAARVTLGNEELSVIGKSVYPENLFV 373 (774)
Q Consensus 296 ~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~ 373 (774)
....+..++..+.++|+++|+||||++...... ++..+++|+||+.+.
T Consensus 109 -~~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~----------------------------- 158 (229)
T cd07477 109 -DSPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDS----------------------------- 158 (229)
T ss_pred -CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecC-----------------------------
Confidence 234566677788899999999999999776654 788899999997421
Q ss_pred ceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCCCCCCCCcccEEE
Q 046220 374 SREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLFPGDFDMPFVT 453 (774)
Q Consensus 374 ~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~ 453 (774)
T Consensus 159 -------------------------------------------------------------------------------- 158 (229)
T cd07477 159 -------------------------------------------------------------------------------- 158 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCceEeecCCCCCCccccC
Q 046220 454 VNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRD 533 (774)
Q Consensus 454 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~ 533 (774)
.+.++.||++|+.. |+.|||.+|+++++.
T Consensus 159 ----------------------------------~~~~~~~s~~g~~~--------~~~apg~~i~~~~~~--------- 187 (229)
T cd07477 159 ----------------------------------NNNRASFSSTGPEV--------ELAAPGVDILSTYPN--------- 187 (229)
T ss_pred ----------------------------------CCCcCCccCCCCCc--------eEEeCCCCeEEecCC---------
Confidence 13456799999865 999999999999876
Q ss_pred CccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHcc
Q 046220 534 IGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTT 580 (774)
Q Consensus 534 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~T 580 (774)
+.|..++|||||||+|||++|||+|++|++++.+||++|++|
T Consensus 188 -----~~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 188 -----NDYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred -----CCEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 678899999999999999999999999999999999999986
No 31
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=1.1e-39 Score=349.74 Aligned_cols=151 Identities=30% Similarity=0.313 Sum_probs=107.3
Q ss_pred ccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccccCCCCCCCCCCC
Q 046220 136 DVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPRDFFG 215 (774)
Q Consensus 136 gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~~~~~~D~~g 215 (774)
.|+|||||||||++||+|.++-.. ..+.+...............+.....|..|
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 54 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISS--------------------------YSKNLVPKGGYDGKEAGETGDINDIVDKLG 54 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhcccc--------------------------cccccccCCCcCCccccccCCCCcCCCCCC
Confidence 489999999999999999853110 000110000000000011112234567899
Q ss_pred CchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCCCcEEEECcCCCCCC
Q 046220 216 HGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPETT 295 (774)
Q Consensus 216 HGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~gvdVIn~SlG~~~~~ 295 (774)
|||||||+|+|+.. ..||||+|+|+.+|+++..+. ....+++++|++|++++++|||||||.....
T Consensus 55 HGT~vAgiia~~~~------------~~GvAp~a~i~~~~v~~~~~~--~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~ 120 (294)
T cd07482 55 HGTAVAGQIAANGN------------IKGVAPGIGIVSYRVFGSCGS--AESSWIIKAIIDAADDGVDVINLSLGGYLII 120 (294)
T ss_pred cHhHHHHHHhcCCC------------CceeCCCCEEEEEEeecCCCC--cCHHHHHHHHHHHHHCCCCEEEeCCccCCCC
Confidence 99999999998642 259999999999999988774 5888999999999999999999999975422
Q ss_pred CC--------CcHHHHHHHHHHcCCcEEEEccCCCCCCC
Q 046220 296 FD--------ENPIAIGAFAALKKGIFVACSAGNSGPRP 326 (774)
Q Consensus 296 ~~--------~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~ 326 (774)
.. .+.+..++..+.++|++||+||||+|...
T Consensus 121 ~~~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~ 159 (294)
T cd07482 121 GGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDV 159 (294)
T ss_pred CcccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCccc
Confidence 11 13456666778889999999999999643
No 32
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6.3e-40 Score=339.82 Aligned_cols=158 Identities=22% Similarity=0.259 Sum_probs=119.0
Q ss_pred CCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccccCCCCCCCCC
Q 046220 134 GSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPRDF 213 (774)
Q Consensus 134 G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~~~~~~D~ 213 (774)
+++|+|||||||||++||+|.++ ++..++|....... ........|.
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~---------------------------i~~~~~~~~~~~~~------~~~~~~~~d~ 48 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK---------------------------IIGGKSFSPYEGDG------NKVSPYYVSA 48 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc---------------------------cccCCCCCCCCCCc------ccCCCCCCCC
Confidence 78999999999999999999743 12222232221000 0001123468
Q ss_pred CCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCC----CCchHHHHHHHHHHHhCCCcEEEECc
Q 046220 214 FGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTL----KAAAVDVLAGMDQAIADGVDVMSLSL 289 (774)
Q Consensus 214 ~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~----~~~~~di~~ai~~a~~~gvdVIn~Sl 289 (774)
.||||||||||+ |+||+|+|+.+|+++..+.. .++..++++||+||+++|+|||||||
T Consensus 49 ~gHGT~vAgiI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~ 110 (247)
T cd07491 49 DGHGTAMARMIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSW 110 (247)
T ss_pred CCcHHHHHHHHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeee
Confidence 899999999995 78999999999999876520 15677899999999999999999999
Q ss_pred CCCCCCC---CCcHHHHHHHHHHcCCcEEEEccCCCCCCCC-C--ccCCCCceEEeccc
Q 046220 290 GFPETTF---DENPIAIGAFAALKKGIFVACSAGNSGPRPY-S--IENGAPWITTVGAG 342 (774)
Q Consensus 290 G~~~~~~---~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~--~~~~~p~vitVgA~ 342 (774)
|...... ....+..++.+|.++|++||+||||+|.... . .++..|++|+|||.
T Consensus 111 g~~~~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~ 169 (247)
T cd07491 111 TIKKPEDNDNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAA 169 (247)
T ss_pred ecccccccccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEee
Confidence 9864322 2567788888999999999999999997654 2 34567889999974
No 33
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=2.3e-40 Score=352.62 Aligned_cols=274 Identities=34% Similarity=0.459 Sum_probs=206.0
Q ss_pred EEEEEcCCCCCCCCCCc-CCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccccCCCCCCCCCCCC
Q 046220 138 IVGVIDSGVWPESPSFK-DDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPRDFFGH 216 (774)
Q Consensus 138 vVgVIDtGid~~Hp~f~-d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~~~~~~D~~gH 216 (774)
+|||||||||++||+|. .+ + ...++.+.+.|.++. .......|..+|
T Consensus 1 ~V~viDtGid~~h~~~~~~~-~---------------------~~~~~~~~~~~~~~~----------~~~~~~~~~~~H 48 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGN-F---------------------IWSKVPGGYNFVDGN----------PNPSPSDDDNGH 48 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTT-E---------------------EEEEEEEEEETTTTB----------STTTSSSTSSSH
T ss_pred CEEEEcCCcCCCChhHccCC-c---------------------ccccccceeeccCCC----------CCcCccccCCCc
Confidence 69999999999999997 32 0 111333444454432 112345678899
Q ss_pred chhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHH-hCCCcEEEECcCCCC--
Q 046220 217 GTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAI-ADGVDVMSLSLGFPE-- 293 (774)
Q Consensus 217 GThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~-~~gvdVIn~SlG~~~-- 293 (774)
||||||||+|.. . .. .....|+||+|+|+.+|+++..+ ....+++++|++++ +.+++|||||||...
T Consensus 49 GT~va~ii~~~~-~-~~-----~~~~~Gva~~a~l~~~~i~~~~~---~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~ 118 (282)
T PF00082_consen 49 GTHVAGIIAGNG-G-NN-----GPGINGVAPNAKLYSYKIFDNSG---GTSSDLIEAIEYAVKNDGVDVINLSFGSNSGP 118 (282)
T ss_dssp HHHHHHHHHHTT-S-SS-----SSSETCSSTTSEEEEEECSSTTS---EEHHHHHHHHHHHHHHTTSSEEEECEEBEESS
T ss_pred cchhhhhccccc-c-cc-----ccccccccccccccccccccccc---cccccccchhhhhhhccCCccccccccccccc
Confidence 999999999986 2 11 11248999999999999987776 68888999999999 899999999998732
Q ss_pred C-CCCCcHHHHHHHHHHcCCcEEEEccCCCCCCCC---CccCCCCceEEecccccCcceeEEEEeCCceEEEeeeeecCC
Q 046220 294 T-TFDENPIAIGAFAALKKGIFVACSAGNSGPRPY---SIENGAPWITTVGAGTVDREFAARVTLGNEELSVIGKSVYPE 369 (774)
Q Consensus 294 ~-~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~g~~~~~~ 369 (774)
. +...+.+..+...+.++|+++|+||||+|.... ..+...+++|+||+..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~-------------------------- 172 (282)
T PF00082_consen 119 PDPSYSDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVD-------------------------- 172 (282)
T ss_dssp SHSHHHHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEE--------------------------
T ss_pred cccccccccccccccccccCcceeeccccccccccccccccccccccccccccc--------------------------
Confidence 1 122334556666888999999999999987654 3555567778888621
Q ss_pred CCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCCCCCCCCcc
Q 046220 370 NLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLFPGDFDM 449 (774)
Q Consensus 370 ~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~ 449 (774)
T Consensus 173 -------------------------------------------------------------------------------- 172 (282)
T PF00082_consen 173 -------------------------------------------------------------------------------- 172 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCceEeecCCCCCCc
Q 046220 450 PFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIA 529 (774)
Q Consensus 450 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~ 529 (774)
..+.++.||++|+... .+++||||+|||.+|+++++....
T Consensus 173 -------------------------------------~~~~~~~~s~~g~~~~-~~~~~~di~a~G~~i~~~~~~~~~-- 212 (282)
T PF00082_consen 173 -------------------------------------NNGQPASYSNYGGPSD-DGRIKPDIAAPGGNILSAVPGSDR-- 212 (282)
T ss_dssp -------------------------------------TTSSBSTTSSBSTTET-TCTTCEEEEEECSSEEEEETTTES--
T ss_pred -------------------------------------cccccccccccccccc-cccccccccccccccccccccccc--
Confidence 1135588999976543 379999999999999988875210
Q ss_pred cccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHccccccccccccccccCCCccCCCcccCCCc
Q 046220 530 TIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTADVLDNAYDMIADISTGVAGTPLDFGAGH 609 (774)
Q Consensus 530 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~ 609 (774)
..|..++|||||||+|||++|||+|++|+|++.+||.+|++||+++.... .......||||+
T Consensus 213 ---------~~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~---------~~~~~~~~G~G~ 274 (282)
T PF00082_consen 213 ---------GSYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTN---------GEGYDNSYGWGL 274 (282)
T ss_dssp ---------EEEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETT---------SSSSHHHHTTSB
T ss_pred ---------ccccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCC---------CCCCCCCccCCh
Confidence 24788999999999999999999999999999999999999999986211 233455889999
Q ss_pred cCCCCCCC
Q 046220 610 INPNKAMD 617 (774)
Q Consensus 610 vn~~~A~~ 617 (774)
||+.+|++
T Consensus 275 in~~~a~~ 282 (282)
T PF00082_consen 275 INAEKALN 282 (282)
T ss_dssp E-HHHHHH
T ss_pred hCHHHHhC
Confidence 99999864
No 34
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8.8e-39 Score=328.17 Aligned_cols=222 Identities=23% Similarity=0.233 Sum_probs=172.8
Q ss_pred ccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccccCCCCCCCCCCC
Q 046220 136 DVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPRDFFG 215 (774)
Q Consensus 136 gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~~~~~~D~~g 215 (774)
||+|||||||||++||+|.+.... .+.+..+ ..........|..|
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~---------------------------~~~~~~~--------~~~~~~~~~~d~~g 45 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALD---------------------------GEVTIDL--------EIIVVSAEGGDKDG 45 (222)
T ss_pred CCEEEEEeCCCCCCChhhhccccc---------------------------ccccccc--------ccccCCCCCCCCCC
Confidence 799999999999999999854110 0111000 00011234567889
Q ss_pred CchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCCCcEEEECcCCCCCC
Q 046220 216 HGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPETT 295 (774)
Q Consensus 216 HGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~gvdVIn~SlG~~~~~ 295 (774)
|||||||||++ .+|+++|+.+|+++..+. +...++++||+|++++|++|||||||.....
T Consensus 46 HGT~vAgiia~------------------~~p~~~i~~~~v~~~~~~--~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~~ 105 (222)
T cd07492 46 HGTACAGIIKK------------------YAPEAEIGSIKILGEDGR--CNSFVLEKALRACVENDIRIVNLSLGGPGDR 105 (222)
T ss_pred cHHHHHHHHHc------------------cCCCCeEEEEEEeCCCCC--cCHHHHHHHHHHHHHCCCCEEEeCCCCCCCC
Confidence 99999999974 459999999999988775 7888999999999999999999999986432
Q ss_pred CCCcHHHHHHHHHHcCCcEEEEccCCCCCCCCCccCCCCceEEecccccCcceeEEEEeCCceEEEeeeeecCCCCCCce
Q 046220 296 FDENPIAIGAFAALKKGIFVACSAGNSGPRPYSIENGAPWITTVGAGTVDREFAARVTLGNEELSVIGKSVYPENLFVSR 375 (774)
Q Consensus 296 ~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~ 375 (774)
....+..++.++.++|+++|+||||++..... ++..+.+|+|++...+.
T Consensus 106 -~~~~~~~~~~~a~~~g~l~V~aagN~~~~~~~-Pa~~~~vi~V~~~~~~~----------------------------- 154 (222)
T cd07492 106 -DFPLLKELLEYAYKAGGIIVAAAPNNNDIGTP-PASFPNVIGVKSDTADD----------------------------- 154 (222)
T ss_pred -cCHHHHHHHHHHHHCCCEEEEECCCCCCCCCC-CccCCceEEEEecCCCC-----------------------------
Confidence 23456677778888999999999999865433 66778888888632110
Q ss_pred EeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCCCCCCCCcccEEEEc
Q 046220 376 EPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLFPGDFDMPFVTVN 455 (774)
Q Consensus 376 ~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~ 455 (774)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCceEeecCCCCCCccccCCc
Q 046220 456 LNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIATIRDIG 535 (774)
Q Consensus 456 ~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~ 535 (774)
.. +.+++ ++|+.|||.+|+++.+.
T Consensus 155 ----------------------------------~~---~~~~~--------~~~~~apg~~i~~~~~~----------- 178 (222)
T cd07492 155 ----------------------------------PK---SFWYI--------YVEFSADGVDIIAPAPH----------- 178 (222)
T ss_pred ----------------------------------Cc---ccccC--------CceEEeCCCCeEeecCC-----------
Confidence 00 11122 34999999999998776
Q ss_pred cccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHcccc
Q 046220 536 KLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTAD 582 (774)
Q Consensus 536 ~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~ 582 (774)
+.|..++|||||||+|||++|||+|++|+|+++|||++|+.||+
T Consensus 179 ---~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 179 ---GRYLTVSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred ---CCEEEeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 67899999999999999999999999999999999999999985
No 35
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=100.00 E-value=8.4e-39 Score=343.21 Aligned_cols=248 Identities=23% Similarity=0.233 Sum_probs=178.8
Q ss_pred cCCCCcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccc
Q 046220 124 HAGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKIST 203 (774)
Q Consensus 124 ~~~~w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~ 203 (774)
...+|..+++|+||+|+|||||||++||+|.++... ...+.|.....
T Consensus 28 ~~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~-------------------------~~~~~~~~~~~-------- 74 (297)
T cd04059 28 VTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP-------------------------EASYDFNDNDP-------- 74 (297)
T ss_pred cHHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc-------------------------cccccccCCCC--------
Confidence 356899999999999999999999999999754111 01122222110
Q ss_pred cCCCCCC--CCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCC
Q 046220 204 TFDYDSP--RDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADG 281 (774)
Q Consensus 204 ~~~~~~~--~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~g 281 (774)
...+ .|..+|||||||||+|+..+.. ...||||+|+|+.+|+++... ....+..++.++.+ .
T Consensus 75 ---~~~~~~~~~~gHGT~vAgiiag~~~~~~--------~~~GvAp~a~l~~~~~~~~~~----~~~~~~~~~~~~~~-~ 138 (297)
T cd04059 75 ---DPTPRYDDDNSHGTRCAGEIAAVGNNGI--------CGVGVAPGAKLGGIRMLDGDV----TDVVEAESLGLNPD-Y 138 (297)
T ss_pred ---CCCCccccccccCcceeeEEEeecCCCc--------ccccccccceEeEEEecCCcc----ccHHHHHHHhcccC-C
Confidence 0112 2778999999999999864321 148999999999999987542 33445566666554 4
Q ss_pred CcEEEECcCCCCCCC----CCcHHHHHHHHHHc-----CCcEEEEccCCCCCCCCC----ccCCCCceEEecccccCcce
Q 046220 282 VDVMSLSLGFPETTF----DENPIAIGAFAALK-----KGIFVACSAGNSGPRPYS----IENGAPWITTVGAGTVDREF 348 (774)
Q Consensus 282 vdVIn~SlG~~~~~~----~~~~~~~a~~~a~~-----~Gi~vV~AAGN~G~~~~~----~~~~~p~vitVgA~~~~~~~ 348 (774)
++|||||||...... .......++.++.+ +|++||+||||+|..... .....|++|+|||++
T Consensus 139 ~~Vin~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~----- 213 (297)
T cd04059 139 IDIYSNSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVT----- 213 (297)
T ss_pred ceEEECCCCCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeC-----
Confidence 699999999764321 12233344444443 699999999999973221 223557788888632
Q ss_pred eEEEEeCCceEEEeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcC
Q 046220 349 AARVTLGNEELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTR 428 (774)
Q Consensus 349 ~~~~~~~~g~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~G 428 (774)
T Consensus 214 -------------------------------------------------------------------------------- 213 (297)
T cd04059 214 -------------------------------------------------------------------------------- 213 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEecCCCCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCccc
Q 046220 429 AAGAIISADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILK 508 (774)
Q Consensus 429 a~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~K 508 (774)
..+.++.||++|+..
T Consensus 214 ----------------------------------------------------------~~g~~~~~s~~g~~~------- 228 (297)
T cd04059 214 ----------------------------------------------------------ANGVRASYSEVGSSV------- 228 (297)
T ss_pred ----------------------------------------------------------CCCCCcCCCCCCCcE-------
Confidence 124567899999987
Q ss_pred CeeEeCCCc-------eEeecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHccc
Q 046220 509 PDILAPGVD-------ILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTA 581 (774)
Q Consensus 509 PDI~APG~~-------I~sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA 581 (774)
++.|||.. |+++..... . ..|..++|||||||+|||++|||+|+||+|++.|||++|++||
T Consensus 229 -~~~a~g~~~~~~~~~i~~~~~~~~----------~-~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~TA 296 (297)
T cd04059 229 -LASAPSGGSGNPEASIVTTDLGGN----------C-NCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTA 296 (297)
T ss_pred -EEEecCCCCCCCCCceEeCCCCCC----------C-CcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHhc
Confidence 89999987 666554310 0 4678899999999999999999999999999999999999998
Q ss_pred c
Q 046220 582 D 582 (774)
Q Consensus 582 ~ 582 (774)
+
T Consensus 297 ~ 297 (297)
T cd04059 297 R 297 (297)
T ss_pred C
Confidence 5
No 36
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=100.00 E-value=1.2e-37 Score=328.78 Aligned_cols=243 Identities=28% Similarity=0.294 Sum_probs=185.2
Q ss_pred CCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccccCCCCCCCC
Q 046220 133 FGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPRD 212 (774)
Q Consensus 133 ~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~~~~~~D 212 (774)
+|+||+|+|||+||+++||+|.+...... .+..... .......|
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~~---------------------------~~~~~~~---------~~~~~~~~ 44 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEAS---------------------------YYVAVND---------AGYASNGD 44 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCcccccc---------------------------ccccccc---------ccCCCCCC
Confidence 69999999999999999999986421100 0000000 00123456
Q ss_pred CCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCC-CCCCchHHHHHHHHHHHhCCCcEEEECcCC
Q 046220 213 FFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYND-TLKAAAVDVLAGMDQAIADGVDVMSLSLGF 291 (774)
Q Consensus 213 ~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~~~di~~ai~~a~~~gvdVIn~SlG~ 291 (774)
..+|||||||||+|+..+ ..+.|+||+|+|+.+|+++..+ . +....+.++++++++.+++|||||||.
T Consensus 45 ~~~HGT~vagiiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~Vin~S~g~ 113 (267)
T cd04848 45 GDSHGTHVAGVIAAARDG---------GGMHGVAPDATLYSARASASAGST--FSDADIAAAYDFLAASGVRIINNSWGG 113 (267)
T ss_pred CCChHHHHHHHHhcCcCC---------CCcccCCcCCEEEEEeccCCCCcc--cchHHHHHHHHHHHhCCCeEEEccCCC
Confidence 789999999999998644 2258999999999999998765 3 677888999999999999999999998
Q ss_pred CCCCC------------CCcHHHHHHHHHHcCCcEEEEccCCCCCCCCCc---------cCCCCceEEecccccCcceeE
Q 046220 292 PETTF------------DENPIAIGAFAALKKGIFVACSAGNSGPRPYSI---------ENGAPWITTVGAGTVDREFAA 350 (774)
Q Consensus 292 ~~~~~------------~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~---------~~~~p~vitVgA~~~~~~~~~ 350 (774)
..... ....+......+.++|+++|+||||++...... +...+++|+||+.+.+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~----- 188 (267)
T cd04848 114 NPAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPN----- 188 (267)
T ss_pred CCcccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCC-----
Confidence 65321 445566777788899999999999998654332 2345667777763211
Q ss_pred EEEeCCceEEEeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCce
Q 046220 351 RVTLGNEELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAA 430 (774)
Q Consensus 351 ~~~~~~g~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~ 430 (774)
T Consensus 189 -------------------------------------------------------------------------------- 188 (267)
T cd04848 189 -------------------------------------------------------------------------------- 188 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCCCCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCcccc--ccCCCCCCCCCCccc
Q 046220 431 GAIISADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAK--FSSRGPSLRSPWILK 508 (774)
Q Consensus 431 g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~--fSS~Gp~~~~~~~~K 508 (774)
+.... ||++|+... .
T Consensus 189 ----------------------------------------------------------~~~~~~~~s~~~~~~~-----~ 205 (267)
T cd04848 189 ----------------------------------------------------------GTIASYSYSNRCGVAA-----N 205 (267)
T ss_pred ----------------------------------------------------------CCcccccccccchhhh-----h
Confidence 12223 488887543 3
Q ss_pred CeeEeCCCceEeecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHcccc
Q 046220 509 PDILAPGVDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTTAD 582 (774)
Q Consensus 509 PDI~APG~~I~sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~TA~ 582 (774)
+++.|||.+|.++.+... ..|..++|||||||+|||++|||+|++|++++++||++|++||+
T Consensus 206 ~~~~apG~~i~~~~~~~~------------~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 206 WCLAAPGENIYSTDPDGG------------NGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred heeecCcCceeecccCCC------------CcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 479999999999876311 57889999999999999999999999999999999999999985
No 37
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-36 Score=323.99 Aligned_cols=354 Identities=23% Similarity=0.315 Sum_probs=261.2
Q ss_pred CCeEEEEeCCCCCCCCCcchhHHHHHHhccCCCCCCCCCceE------EEeccceeeEEEEeC-----HHHHHhhcCCCC
Q 046220 30 RKTYIVHMDKAAMPAPFSTHHHWYMSTLSSLSSPDGDAPTHL------YTYNHVVDGFSAVLS-----QTHLKNLQKMPG 98 (774)
Q Consensus 30 ~~~yIV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------~~y~~~~~g~s~~~~-----~~~~~~L~~~p~ 98 (774)
+.+|||.|+.... ...++..+++.|+..... .-+++ -.|..-|.-+-++-. .-++++|..+|+
T Consensus 49 e~EyIv~F~~y~~---Ak~r~syi~skl~gS~Vt---nWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe~hp~ 122 (1033)
T KOG4266|consen 49 ESEYIVRFKQYKP---AKDRRSYIESKLRGSGVT---NWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIERLEMHPD 122 (1033)
T ss_pred cceeEEEeccccc---chHHHHHHHHHhhcCCCC---ceeEeeccCccccCCCccceEEEeccCccchhheeeehhcCCC
Confidence 5789999996532 345677777777654433 23333 334444444444433 235889999999
Q ss_pred eEEEEeceeeecccC------------C----------C--------CCccccc------------ccCCCCcCCCCCCc
Q 046220 99 HHGTYLETFGHLHTT------------H----------T--------PKFVGLK------------KHAGLWPAAGFGSD 136 (774)
Q Consensus 99 V~~V~~~~~~~~~~~------------~----------s--------~~~~g~~------------~~~~~w~~~~~G~g 136 (774)
|+.|.|.+.+.+-.. . + +.-|+-. .++-+|..|++|++
T Consensus 123 vk~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~GyTGa~ 202 (1033)
T KOG4266|consen 123 VKVVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKKGYTGAK 202 (1033)
T ss_pred ceeecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhccccCCc
Confidence 999999876654100 0 0 0001000 13458999999999
Q ss_pred cEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccccCCCCCCCCCCCC
Q 046220 137 VIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTTFDYDSPRDFFGH 216 (774)
Q Consensus 137 VvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~~~~~~~~D~~gH 216 (774)
|+|||.|||+..+||-|+.- .-...+++. ..-.|.-||
T Consensus 203 VkvAiFDTGl~~~HPHFrnv----------------------------KERTNWTNE--------------~tLdD~lgH 240 (1033)
T KOG4266|consen 203 VKVAIFDTGLRADHPHFRNV----------------------------KERTNWTNE--------------DTLDDNLGH 240 (1033)
T ss_pred eEEEEeecccccCCccccch----------------------------hhhcCCcCc--------------cccccCccc
Confidence 99999999999999999721 000011111 234567899
Q ss_pred chhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCCCcEEEECcCCCCCCC
Q 046220 217 GTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPETTF 296 (774)
Q Consensus 217 GThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~gvdVIn~SlG~~~~~~ 296 (774)
||.|||+|||... ..|.||+++|+++|||-+... .+++.+++|+.||+...+||+|+|+|++ .+
T Consensus 241 GTFVAGvia~~~e------------c~gfa~d~e~~~frvft~~qV--SYTSWFLDAFNYAI~~kidvLNLSIGGP--Df 304 (1033)
T KOG4266|consen 241 GTFVAGVIAGRNE------------CLGFASDTEIYAFRVFTDAQV--SYTSWFLDAFNYAIATKIDVLNLSIGGP--DF 304 (1033)
T ss_pred ceeEeeeeccchh------------hcccCCccceeEEEeecccee--ehhhHHHHHHHHHHhhhcceEeeccCCc--cc
Confidence 9999999999752 379999999999999988765 7889999999999999999999999996 46
Q ss_pred CCcHHHHHHHHHHcCCcEEEEccCCCCCCCCCccCCCC--ceEEecccccCcceeEEEEeCCceEEEeeeeecCCCCCCc
Q 046220 297 DENPIAIGAFAALKKGIFVACSAGNSGPRPYSIENGAP--WITTVGAGTVDREFAARVTLGNEELSVIGKSVYPENLFVS 374 (774)
Q Consensus 297 ~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p--~vitVgA~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~ 374 (774)
.+.++-+-+.....++|++|.|+||+||-..+..|.+. .+|.||.
T Consensus 305 mD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGG--------------------------------- 351 (1033)
T KOG4266|consen 305 MDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGG--------------------------------- 351 (1033)
T ss_pred ccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeecc---------------------------------
Confidence 67777777778888999999999999998777665332 2233331
Q ss_pred eEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCCCCCCCCcccEEEE
Q 046220 375 REPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLFPGDFDMPFVTV 454 (774)
Q Consensus 375 ~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i 454 (774)
T Consensus 352 -------------------------------------------------------------------------------- 351 (1033)
T KOG4266|consen 352 -------------------------------------------------------------------------------- 351 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCC----CCCcccCeeEeCCCceEeecCCCCCCcc
Q 046220 455 NLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLR----SPWILKPDILAPGVDILGAWVPNRPIAT 530 (774)
Q Consensus 455 ~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~----~~~~~KPDI~APG~~I~sa~~~~~~~~~ 530 (774)
.+..+.+|.|||||-+.. ..|++||||++-|.+|....-.
T Consensus 352 ------------------------------IdfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~------ 395 (1033)
T KOG4266|consen 352 ------------------------------IDFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVS------ 395 (1033)
T ss_pred ------------------------------ccccchhhhhccCCcceeecCCcccccCCceEeeccccccCccc------
Confidence 233468999999996532 2489999999999999866443
Q ss_pred ccCCccccccceecccccchhHHHHHHHHHHHH----hcCCCCHHHHHHHHHccccccccccccccccCCCccCCCcccC
Q 046220 531 IRDIGKLLTEYALESGTSMSCPHAAGIATLLKA----THHEWSSAAIRSAMMTTADVLDNAYDMIADISTGVAGTPLDFG 606 (774)
Q Consensus 531 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G 606 (774)
.+...+||||.|+|.|||+++||.+ +.--+.|+.+|++|+..|.+++. ..-+.||
T Consensus 396 --------~GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg-------------~NMfEQG 454 (1033)
T KOG4266|consen 396 --------TGCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPG-------------PNMFEQG 454 (1033)
T ss_pred --------ccchhccCCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCC-------------Cchhhcc
Confidence 5778899999999999999999976 33456899999999999999853 2346999
Q ss_pred CCccCCCCCCC
Q 046220 607 AGHINPNKAMD 617 (774)
Q Consensus 607 ~G~vn~~~A~~ 617 (774)
+|++|+.++.+
T Consensus 455 aGkldLL~syq 465 (1033)
T KOG4266|consen 455 AGKLDLLESYQ 465 (1033)
T ss_pred CcchhHHHHHH
Confidence 99999998876
No 38
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-32 Score=306.09 Aligned_cols=240 Identities=27% Similarity=0.315 Sum_probs=180.9
Q ss_pred CCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCCCcEEEECcCCCC
Q 046220 214 FGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGFPE 293 (774)
Q Consensus 214 ~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~gvdVIn~SlG~~~ 293 (774)
.-|||||||||+|+..... ...||||+|+|+.+++.+..-..+.+...+.+|+..++++.+||||||+|-..
T Consensus 310 g~HGTHVAgIa~anhpe~p--------~~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~a 381 (1304)
T KOG1114|consen 310 GPHGTHVAGIAAANHPETP--------ELNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGEDA 381 (1304)
T ss_pred CCCcceehhhhccCCCCCc--------cccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCccC
Confidence 4599999999999975542 25799999999999997755333456778899999999999999999999865
Q ss_pred -CCCCCcHHHHHHHHHHcCCcEEEEccCCCCCCCCCccC---CCCceEEecccccCcceeEEEEeCCceEEEeeeeecCC
Q 046220 294 -TTFDENPIAIGAFAALKKGIFVACSAGNSGPRPYSIEN---GAPWITTVGAGTVDREFAARVTLGNEELSVIGKSVYPE 369 (774)
Q Consensus 294 -~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~---~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~g~~~~~~ 369 (774)
.+.....+...-..+.++|+++|+||||+||.-.+++. ....+|.|||.-....
T Consensus 382 ~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~m---------------------- 439 (1304)
T KOG1114|consen 382 HLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGM---------------------- 439 (1304)
T ss_pred CCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHH----------------------
Confidence 34445555555545557899999999999998776653 3346777776210000
Q ss_pred CCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCCCCCCCCcc
Q 046220 370 NLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLFPGDFDM 449 (774)
Q Consensus 370 ~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~ 449 (774)
...
T Consensus 440 ---------------------------------------------------m~a-------------------------- 442 (1304)
T KOG1114|consen 440 ---------------------------------------------------MQA-------------------------- 442 (1304)
T ss_pred ---------------------------------------------------HHh--------------------------
Confidence 000
Q ss_pred cEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCCCceEeecCCCCCCc
Q 046220 450 PFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPGVDILGAWVPNRPIA 529 (774)
Q Consensus 450 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~ 529 (774)
.|- +-.+-......+|||||+.| |-+--.|+|||+.|.+- |..
T Consensus 443 --------------~y~----------------~~e~vp~~~YtWsSRgP~~D--G~lGVsi~APggAiAsV-P~~---- 485 (1304)
T KOG1114|consen 443 --------------EYS----------------VREPVPSNPYTWSSRGPCLD--GDLGVSISAPGGAIASV-PQY---- 485 (1304)
T ss_pred --------------hhh----------------hhccCCCCccccccCCCCcC--CCcceEEecCCccccCC-chh----
Confidence 000 00011245788999999998 78888999999998653 221
Q ss_pred cccCCccccccceecccccchhHHHHHHHHHHHH----hcCCCCHHHHHHHHHccccccccccccccccCCCccCCCccc
Q 046220 530 TIRDIGKLLTEYALESGTSMSCPHAAGIATLLKA----THHEWSSAAIRSAMMTTADVLDNAYDMIADISTGVAGTPLDF 605 (774)
Q Consensus 530 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~ 605 (774)
.+ ..-..|+|||||+|+++|.+|||++ .+-.|||..||.+|++||+++++. .++.+
T Consensus 486 -----tl--q~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~i-------------d~faq 545 (1304)
T KOG1114|consen 486 -----TL--QNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDI-------------DSFAQ 545 (1304)
T ss_pred -----hh--hhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCcc-------------chhcc
Confidence 11 4668999999999999999999965 467899999999999999998532 46899
Q ss_pred CCCccCCCCCCC
Q 046220 606 GAGHINPNKAMD 617 (774)
Q Consensus 606 G~G~vn~~~A~~ 617 (774)
|.|+|++++|.+
T Consensus 546 G~GmlqVdkAyE 557 (1304)
T KOG1114|consen 546 GQGMLQVDKAYE 557 (1304)
T ss_pred CcceeehhHHHH
Confidence 999999999976
No 39
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.98 E-value=3.4e-32 Score=281.10 Aligned_cols=195 Identities=21% Similarity=0.156 Sum_probs=141.1
Q ss_pred CCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHH--HhCCCcEEEE
Q 046220 210 PRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQA--IADGVDVMSL 287 (774)
Q Consensus 210 ~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a--~~~gvdVIn~ 287 (774)
..|.++|||||||||||. .|++|+++|+..++.. ...+.+..+++|+ .+.+++||||
T Consensus 33 ~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~------~~~~~~~~~i~~~~~~~~gv~VINm 91 (247)
T cd07488 33 NNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGI------KSNNGQWQECLEAQQNGNNVKIINH 91 (247)
T ss_pred CCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCC------CCCCccHHHHHHHHHhcCCceEEEe
Confidence 457899999999999987 4677999998766522 2334466778888 5679999999
Q ss_pred CcCCCCCCC------CCcHHHHHHHHHHcC-CcEEEEccCCCCCCC-----CCccCCCCceEEecccccCcceeEEEEeC
Q 046220 288 SLGFPETTF------DENPIAIGAFAALKK-GIFVACSAGNSGPRP-----YSIENGAPWITTVGAGTVDREFAARVTLG 355 (774)
Q Consensus 288 SlG~~~~~~------~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~-----~~~~~~~p~vitVgA~~~~~~~~~~~~~~ 355 (774)
|||...... ..+.+..++..+.++ |+++|+||||+|... ...+..++++|+|||.+....
T Consensus 92 S~G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~-------- 163 (247)
T cd07488 92 SYGEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD-------- 163 (247)
T ss_pred CCccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC--------
Confidence 999864321 223455666666655 999999999999743 233456778899987432110
Q ss_pred CceEEEeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEe
Q 046220 356 NEELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIIS 435 (774)
Q Consensus 356 ~g~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~ 435 (774)
T Consensus 164 -------------------------------------------------------------------------------- 163 (247)
T cd07488 164 -------------------------------------------------------------------------------- 163 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeEeCC
Q 046220 436 ADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDILAPG 515 (774)
Q Consensus 436 n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG 515 (774)
....+.||++|-.....+..||||+|||
T Consensus 164 ----------------------------------------------------~~~~s~~sn~~~~~~~~~~~~~di~APG 191 (247)
T cd07488 164 ----------------------------------------------------RFFASDVSNAGSEINSYGRRKVLIVAPG 191 (247)
T ss_pred ----------------------------------------------------cceecccccccCCCCCCCCceeEEEEee
Confidence 0112456665432222368899999999
Q ss_pred CceEeecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCC------HHHHHHHHHccc
Q 046220 516 VDILGAWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWS------SAAIRSAMMTTA 581 (774)
Q Consensus 516 ~~I~sa~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s------~~~ik~~L~~TA 581 (774)
++|++ +. +.|..++|||||||||||++|||++++|++. -.++|.+|+.|+
T Consensus 192 ~~i~s--~~--------------~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~~ 247 (247)
T cd07488 192 SNYNL--PD--------------GKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSSV 247 (247)
T ss_pred eeEEC--CC--------------CceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhccC
Confidence 99998 32 5788999999999999999999999987765 456777777653
No 40
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.97 E-value=1.3e-30 Score=269.68 Aligned_cols=197 Identities=35% Similarity=0.491 Sum_probs=158.4
Q ss_pred CCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHH-hCCCcEEEE
Q 046220 209 SPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAI-ADGVDVMSL 287 (774)
Q Consensus 209 ~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~-~~gvdVIn~ 287 (774)
...+..+||||||++|++...+.. ..|+||+++|+.+|+....+. .....+++++++++ ..+++||||
T Consensus 39 ~~~~~~~HGt~va~~i~~~~~~~~---------~~g~a~~a~i~~~~~~~~~~~--~~~~~~~~ai~~~~~~~~~~iin~ 107 (241)
T cd00306 39 DPDDGNGHGTHVAGIIAASANNGG---------GVGVAPGAKLIPVKVLDGDGS--GSSSDIAAAIDYAAADQGADVINL 107 (241)
T ss_pred CCCCCCCcHHHHHHHHhcCCCCCC---------CEEeCCCCEEEEEEEecCCCC--cCHHHHHHHHHHHHhccCCCEEEe
Confidence 345678999999999999864432 279999999999999887664 67888999999999 899999999
Q ss_pred CcCCCCCCCCCcHHHHHHHHHHcC-CcEEEEccCCCCCCCC---CccCCCCceEEecccccCcceeEEEEeCCceEEEee
Q 046220 288 SLGFPETTFDENPIAIGAFAALKK-GIFVACSAGNSGPRPY---SIENGAPWITTVGAGTVDREFAARVTLGNEELSVIG 363 (774)
Q Consensus 288 SlG~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~g 363 (774)
|||..... ....+...+..+.++ |+++|+|+||++.... ..++..+++|+||+.+.+.
T Consensus 108 S~g~~~~~-~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~----------------- 169 (241)
T cd00306 108 SLGGPGSP-PSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG----------------- 169 (241)
T ss_pred CCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC-----------------
Confidence 99986543 345566667777777 9999999999998776 5777889999999853211
Q ss_pred eeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCCCC
Q 046220 364 KSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNLF 443 (774)
Q Consensus 364 ~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~ 443 (774)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCcc-ccccCCCCCCCCCCcccCeeEeCCCceEeec
Q 046220 444 PGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQV-AKFSSRGPSLRSPWILKPDILAPGVDILGAW 522 (774)
Q Consensus 444 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~ 522 (774)
.. ..++++| .|||+.|||.++....
T Consensus 170 ----------------------------------------------~~~~~~~~~~--------~~~~~~apg~~~~~~~ 195 (241)
T cd00306 170 ----------------------------------------------TPASPSSNGG--------AGVDIAAPGGDILSSP 195 (241)
T ss_pred ----------------------------------------------CccCCcCCCC--------CCceEEeCcCCccCcc
Confidence 11 1344444 3669999999998751
Q ss_pred CCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcCCCCHHHHHHHHHcc
Q 046220 523 VPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHHEWSSAAIRSAMMTT 580 (774)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~L~~T 580 (774)
.... ..+..++|||||||+|||++||++|++|++++.++|++|++|
T Consensus 196 ~~~~------------~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 196 TTGG------------GGYATLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred cCCC------------CCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 1111 678999999999999999999999999999999999999875
No 41
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.8e-23 Score=237.38 Aligned_cols=273 Identities=32% Similarity=0.418 Sum_probs=195.5
Q ss_pred CCCCcC--CCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCccc
Q 046220 125 AGLWPA--AGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKIS 202 (774)
Q Consensus 125 ~~~w~~--~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~ 202 (774)
...|.. +.+|+||+|+|||+||+..||+|.+.... .++|.+..
T Consensus 130 ~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~~---------------------------~~~~~~~~-------- 174 (508)
T COG1404 130 GALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAVA---------------------------GGDFVDGD-------- 174 (508)
T ss_pred ccccccccCCCCCCeEEEEeccCCCCCChhhhccccc---------------------------ccccccCC--------
Confidence 457877 89999999999999999999999854210 01222221
Q ss_pred ccCCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeC-CCCCCchHHHHHHHHHHHhCC
Q 046220 203 TTFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYN-DTLKAAAVDVLAGMDQAIADG 281 (774)
Q Consensus 203 ~~~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~-g~~~~~~~di~~ai~~a~~~g 281 (774)
+.....|.++|||||+|++++....+ ...+.|++|+++++.+|++... +. ....+++++|+++++.+
T Consensus 175 ---~~~~~~d~~~hGt~vag~ia~~~~~~-------~~~~~g~a~~~~~~~~~~~~~~~g~--~~~~~~~~~i~~~~~~~ 242 (508)
T COG1404 175 ---PEPPFLDDNGHGTHVAGTIAAVIFDN-------GAGVAGVAPGAKLLLVKVLGSGGGS--GELSDVAEGIEGAANLG 242 (508)
T ss_pred ---CCCCCCCCCCCcceeeeeeeeecccC-------CCccccccCCCcEEEEEeccCCCCc--ccHHHHHHHHHHHHhcC
Confidence 00024688999999999999842111 1125899999999999999876 55 78888899999999999
Q ss_pred --CcEEEECcCCCCCCCCCcHHHHHHHHHHcCC-cEEEEccCCCCCCCC----CccCCC--CceEEecccccCcceeEEE
Q 046220 282 --VDVMSLSLGFPETTFDENPIAIGAFAALKKG-IFVACSAGNSGPRPY----SIENGA--PWITTVGAGTVDREFAARV 352 (774)
Q Consensus 282 --vdVIn~SlG~~~~~~~~~~~~~a~~~a~~~G-i~vV~AAGN~G~~~~----~~~~~~--p~vitVgA~~~~~~~~~~~ 352 (774)
+++||||+|..........+..++..++..| +++|+++||.+.... ..+... +.+++|++..
T Consensus 243 ~~~~~in~s~g~~~~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~--------- 313 (508)
T COG1404 243 GPADVINLSLGGSLSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALD--------- 313 (508)
T ss_pred CCCcEEEecCCCCccccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCC---------
Confidence 9999999998522233445566666777776 999999999986642 122211 2444444311
Q ss_pred EeCCceEEEeeeeecCCCCCCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEE
Q 046220 353 TLGNEELSVIGKSVYPENLFVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGA 432 (774)
Q Consensus 353 ~~~~g~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~ 432 (774)
T Consensus 314 -------------------------------------------------------------------------------- 313 (508)
T COG1404 314 -------------------------------------------------------------------------------- 313 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCCCCCCCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCCCCCCCcccCeeE
Q 046220 433 IISADSRQNLFPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPSLRSPWILKPDIL 512 (774)
Q Consensus 433 i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~ 512 (774)
..+.++.||++|+.. ..++.
T Consensus 314 ------------------------------------------------------~~~~~~~~s~~g~~~------~~~~~ 333 (508)
T COG1404 314 ------------------------------------------------------LSDTVASFSNDGSPT------GVDIA 333 (508)
T ss_pred ------------------------------------------------------CCCccccccccCCCC------Cccee
Confidence 124678899999852 12999
Q ss_pred eCCCceEe-----ecCCCCCCccccCCccccccceecccccchhHHHHHHHHHHHHhcC-CCCHHHHHHHHHcccccccc
Q 046220 513 APGVDILG-----AWVPNRPIATIRDIGKLLTEYALESGTSMSCPHAAGIATLLKATHH-EWSSAAIRSAMMTTADVLDN 586 (774)
Q Consensus 513 APG~~I~s-----a~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P-~~s~~~ik~~L~~TA~~~~~ 586 (774)
|||.+|.+ +++... ..|..++||||++|||+|++||+++.+| .+++.+++..+..++...
T Consensus 334 apg~~i~~~~~~~~~~~~~------------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~~~-- 399 (508)
T COG1404 334 APGVNILSLSAVNTLPGDG------------ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGLT-- 399 (508)
T ss_pred CCCccccccccceeeeCCc------------cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhccccc--
Confidence 99999987 444310 1389999999999999999999999999 899999999988888740
Q ss_pred ccccccccCCCccCCCcccCCCccCCCCCCC
Q 046220 587 AYDMIADISTGVAGTPLDFGAGHINPNKAMD 617 (774)
Q Consensus 587 ~g~~~~~~~~~~~~~~~~~G~G~vn~~~A~~ 617 (774)
........++.|..+...+..
T Consensus 400 ----------~~~~~~~~~~~~~~~~~~~~~ 420 (508)
T COG1404 400 ----------PLSGVDNLVGGGLANLDAAAT 420 (508)
T ss_pred ----------cCCccccccccCccccccccc
Confidence 011223366666666555444
No 42
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=4.5e-24 Score=217.20 Aligned_cols=153 Identities=21% Similarity=0.353 Sum_probs=102.9
Q ss_pred CCCCcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCccccc
Q 046220 125 AGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKISTT 204 (774)
Q Consensus 125 ~~~w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~~ 204 (774)
..+|.++++|++|++||+|.||||-||++..+ | .--.+++|..+ ++
T Consensus 151 ~~awa~g~tgknvttaimddgvdymhpdlk~n------------------y-------naeasydfssn---------dp 196 (629)
T KOG3526|consen 151 AEAWALGYTGKNVTTAIMDDGVDYMHPDLKSN------------------Y-------NAEASYDFSSN---------DP 196 (629)
T ss_pred HHHHhhcccCCCceEEeecCCchhcCcchhcc------------------c-------CceeecccccC---------CC
Confidence 45899999999999999999999999999732 1 12233444432 22
Q ss_pred CCCCCCCC--CCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHh-CC
Q 046220 205 FDYDSPRD--FFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIA-DG 281 (774)
Q Consensus 205 ~~~~~~~D--~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~-~g 281 (774)
.++..-.| .+.|||.|||-+++...++.. | .|||.+.++..+|+++. .+..|+++|-....+ ..
T Consensus 197 fpyprytddwfnshgtrcagev~aardngic--g------vgvaydskvagirmldq-----pymtdlieansmghep~k 263 (629)
T KOG3526|consen 197 FPYPRYTDDWFNSHGTRCAGEVVAARDNGIC--G------VGVAYDSKVAGIRMLDQ-----PYMTDLIEANSMGHEPSK 263 (629)
T ss_pred CCCCcccchhhhccCccccceeeeeccCCce--e------eeeeeccccceeeecCC-----chhhhhhhhcccCCCCce
Confidence 23222223 589999999999888776654 2 69999999999999875 566777766433332 35
Q ss_pred CcEEEECcCCCCCC-CCCcHHHHHHHHHH----c-----CCcEEEEccCCCCCC
Q 046220 282 VDVMSLSLGFPETT-FDENPIAIGAFAAL----K-----KGIFVACSAGNSGPR 325 (774)
Q Consensus 282 vdVIn~SlG~~~~~-~~~~~~~~a~~~a~----~-----~Gi~vV~AAGN~G~~ 325 (774)
++|.+-|||..... ..+-| ..+..+|+ + .|-++|.|.|..|..
T Consensus 264 ihiysaswgptddgktvdgp-rnatmraiv~gvnegrnglgsiyvwasgdgge~ 316 (629)
T KOG3526|consen 264 IHIYSASWGPTDDGKTVDGP-RNATMRAIVRGVNEGRNGLGSIYVWASGDGGED 316 (629)
T ss_pred EEEEecccCcCCCCcccCCc-hhHHHHHHHHhhhcccCCcccEEEEecCCCCCc
Confidence 78999999976432 22222 22222332 2 355788888877743
No 43
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.71 E-value=4.5e-17 Score=178.71 Aligned_cols=101 Identities=28% Similarity=0.315 Sum_probs=80.6
Q ss_pred eeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhC---CCcEEEECcCCCCCCC---CCcHHHHHHHHHHcCCcE
Q 046220 241 TAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIAD---GVDVMSLSLGFPETTF---DENPIAIGAFAALKKGIF 314 (774)
Q Consensus 241 ~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~---gvdVIn~SlG~~~~~~---~~~~~~~a~~~a~~~Gi~ 314 (774)
.+.||||+|+|+.|+++++ ...+++.++.+++.+ +++|||+|||...... +.+.+..++.+|..+||+
T Consensus 82 ~~~gvAP~a~i~~~~~~~~------~~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Git 155 (361)
T cd04056 82 YAGAIAPGANITLYFAPGT------VTNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGIT 155 (361)
T ss_pred HHHhccCCCeEEEEEECCc------CccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeE
Confidence 3689999999999999754 245577888888887 9999999999865321 235667777888899999
Q ss_pred EEEccCCCCCCCC-----------CccCCCCceEEecccccCcc
Q 046220 315 VACSAGNSGPRPY-----------SIENGAPWITTVGAGTVDRE 347 (774)
Q Consensus 315 vV~AAGN~G~~~~-----------~~~~~~p~vitVgA~~~~~~ 347 (774)
||+|+||+|.... ..++..|++++||+++....
T Consensus 156 vvaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~~ 199 (361)
T cd04056 156 VLAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYTG 199 (361)
T ss_pred EEEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccCC
Confidence 9999999997653 35678999999999876543
No 44
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.20 E-value=1.2e-10 Score=110.55 Aligned_cols=115 Identities=19% Similarity=0.206 Sum_probs=90.5
Q ss_pred CCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecC-CCCCCC--CCCCc
Q 046220 372 FVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISAD-SRQNLF--PGDFD 448 (774)
Q Consensus 372 ~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~-~~~~~~--~~~~~ 448 (774)
.....+++|.+. |....+...+++|||+|| +|+.|.+.+ |..+++++||.|+|++|+ .+.... .....
T Consensus 24 ~~~~~~lv~~g~------g~~~d~~~~dv~GkIvL~--~rg~c~~~~-K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~ 94 (143)
T cd02133 24 LGKTYELVDAGL------GTPEDFEGKDVKGKIALI--QRGEITFVE-KIANAKAAGAVGVIIYNNVDGLIPGTLGEAVF 94 (143)
T ss_pred CCcEEEEEEccC------CchhccCCCCccceEEEE--ECCCCCHHH-HHHHHHHCCCeEEEEeecCCCcccccCCCCCe
Confidence 356788998644 333444556899999999 999999888 999999999999999988 332111 11357
Q ss_pred ccEEEEccccHHHHHHHHHhCCCcEEEEEeceeEecccCCCccccccCCCCC
Q 046220 449 MPFVTVNLNNGELVKKYIINADNATVSIKFQITILGTKPSPQVAKFSSRGPS 500 (774)
Q Consensus 449 ~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~ 500 (774)
+|+++|+.++|..|++|+++ ++++.+..+.. ..+++.++.||||||+
T Consensus 95 iP~v~Is~~dG~~L~~~l~~----~~~i~~~~~~~-~~~~p~va~fSsrgp~ 141 (143)
T cd02133 95 IPVVFISKEDGEALKAALES----SKKLTFNTKKE-KATNPDLADFSSRGPW 141 (143)
T ss_pred EeEEEecHHHHHHHHHHHhC----CCeEEEEeccc-cccCCccccccCcCCC
Confidence 89999999999999999988 56677666655 4577889999999997
No 45
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.08 E-value=1.1e-09 Score=101.94 Aligned_cols=118 Identities=31% Similarity=0.573 Sum_probs=93.4
Q ss_pred EEeCCceEEEeeeeecCCCCCCceEeEEEccC---CCCcccccCCCCCCCCcccEEEEEEEeCCCC-chhHHHHHHHHhc
Q 046220 352 VTLGNEELSVIGKSVYPENLFVSREPIYFGYG---NRSKEICEGNSTDPRAVAGKYIFCAFDYKGN-ITVSQQLEEVRRT 427 (774)
Q Consensus 352 ~~~~~g~~~~~g~~~~~~~~~~~~~~l~~~~~---~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~-~~~~~~~~~~~~~ 427 (774)
+.++|++. +.|+++++... ..+++++... ......|.+..+...+++|||++| +++.| .+.+ |..+++++
T Consensus 2 i~LGng~~-i~G~sl~~~~~--~~~~~~~~~~~~~~~~~~~C~~~~~~~~~v~GkIVlc--~~~~~~~~~~-k~~~~~~~ 75 (126)
T cd02120 2 VTLGNGKT-IVGQSLYPGNL--KTYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLC--DRGGNTSRVA-KGDAVKAA 75 (126)
T ss_pred EEeCCCCE-EEEEEccCCCC--CccceEeccCcCCCCccccCCCCCCChhhccccEEEE--eCCCCccHHH-HHHHHHHc
Confidence 57888887 99999998332 4567776332 234578988888888999999999 99998 8788 99999999
Q ss_pred CceEEEEecCC-CCC-CCCCCCcccEEEEccccHHHHHHHHHhCCCcEEE
Q 046220 428 RAAGAIISADS-RQN-LFPGDFDMPFVTVNLNNGELVKKYIINADNATVS 475 (774)
Q Consensus 428 Ga~g~i~~n~~-~~~-~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 475 (774)
||.|+|++|+. +.. .......+|.+.|+.++|..|++|++++.+++++
T Consensus 76 GA~gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 76 GGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred CCcEEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 99999999883 221 2222468999999999999999999988776554
No 46
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=98.92 E-value=1.8e-09 Score=92.16 Aligned_cols=80 Identities=34% Similarity=0.535 Sum_probs=58.4
Q ss_pred eEEEEeCCCCCCCC-CcchhHHHHHHhccCCCC-CCCCCceEEEeccceeeEEEEeCHHHHHhhcCCCCeEEEEeceeee
Q 046220 32 TYIVHMDKAAMPAP-FSTHHHWYMSTLSSLSSP-DGDAPTHLYTYNHVVDGFSAVLSQTHLKNLQKMPGHHGTYLETFGH 109 (774)
Q Consensus 32 ~yIV~~~~~~~~~~-~~~~~~~~~~~l~~~~~~-~~~~~~~~~~y~~~~~g~s~~~~~~~~~~L~~~p~V~~V~~~~~~~ 109 (774)
+|||+|+++..... ...+.+++.+++.+.... .....++.+.|+..|+||+++++++++++|+++|+|++|+||+.++
T Consensus 1 ~YIV~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~v~ 80 (82)
T PF05922_consen 1 RYIVVFKDDASAASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQVVS 80 (82)
T ss_dssp EEEEEE-TTSTHHCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECEEE
T ss_pred CEEEEECCCCCcchhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCceEe
Confidence 69999999866554 566777777654431100 1125799999999999999999999999999999999999999988
Q ss_pred cc
Q 046220 110 LH 111 (774)
Q Consensus 110 ~~ 111 (774)
++
T Consensus 81 l~ 82 (82)
T PF05922_consen 81 LH 82 (82)
T ss_dssp E-
T ss_pred cC
Confidence 64
No 47
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=98.64 E-value=5e-08 Score=86.77 Aligned_cols=90 Identities=19% Similarity=0.281 Sum_probs=71.7
Q ss_pred ceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecC------CCCCCCCCCC
Q 046220 374 SREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISAD------SRQNLFPGDF 447 (774)
Q Consensus 374 ~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~------~~~~~~~~~~ 447 (774)
.+.+|++.........|.+......+++|||+|| +||.|.+.+ |..+++++||.|+|++|. ..........
T Consensus 6 ~~~~lV~~~~~~~~~~~~~~~~~~~~~~gkIvlv--~rg~~~~~~-k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~ 82 (101)
T PF02225_consen 6 VTGPLVPAGNGIDEGDCCPSDYNGSDVKGKIVLV--ERGSCSFDD-KVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPI 82 (101)
T ss_dssp EEEEEEEETTEEECCHHHHHHTSTSTCTTSEEEE--ESTSSCHHH-HHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTST
T ss_pred EEEEEEEecCCCCcccccccccCCccccceEEEE--ecCCCCHHH-HHHHHHHcCCEEEEEEeCCccccCcccccCCCCc
Confidence 4567775444445567777788889999999999 999999998 999999999999999992 2223344568
Q ss_pred cccEEEEccccHHHHHHHH
Q 046220 448 DMPFVTVNLNNGELVKKYI 466 (774)
Q Consensus 448 ~~p~~~i~~~~g~~l~~~~ 466 (774)
.+|+++|+.++|+.|++|+
T Consensus 83 ~iP~v~I~~~~g~~L~~~i 101 (101)
T PF02225_consen 83 DIPVVFISYEDGEALLAYI 101 (101)
T ss_dssp BSEEEEE-HHHHHHHHHHH
T ss_pred EEEEEEeCHHHHhhhhccC
Confidence 9999999999999999985
No 48
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=2.3e-07 Score=103.12 Aligned_cols=157 Identities=18% Similarity=0.174 Sum_probs=98.7
Q ss_pred cCCCCcCCCCCCccEEEEEcCCCCCCCCCCcCCCCCCCccccccceecccccCcccCCceeeeeeeccccccccCCcccc
Q 046220 124 HAGLWPAAGFGSDVIVGVIDSGVWPESPSFKDDGMPPVPERWRGACEVGVEFNASHCNRKLIGARSFNKGLKQYGLKIST 203 (774)
Q Consensus 124 ~~~~w~~~~~G~gVvVgVIDtGid~~Hp~f~d~~~~~~~~~w~g~~~~g~~f~~~~~n~ki~g~~~f~~~~~~~~~~~~~ 203 (774)
...+|..+++|+++.|+|+|+|+...||++... ....+.+++.... +.
T Consensus 22 v~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~-------------------------~~~~~s~d~~~~~-------~~ 69 (431)
T KOG3525|consen 22 VQNAWCKGYTGTRVSVTILDDGLECSHPDLRNN-------------------------YDPLGSYDVNRHD-------ND 69 (431)
T ss_pred eeeccccCCCCCceEEEEeeccccccCcccccc-------------------------cCcceeEeeecCC-------CC
Confidence 466899999999999999999999999999742 1222333333221 11
Q ss_pred cCCCCCCCCCCCCchhhHhhhcccccCCccccccccceeeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHh-CCC
Q 046220 204 TFDYDSPRDFFGHGTHTSSTIAGSRVQNANYFGYAEGTAIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIA-DGV 282 (774)
Q Consensus 204 ~~~~~~~~D~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~-~gv 282 (774)
+.+-.+......|||-||+-.+...++..- ..|+++++++..++++... .++...+...... .-+
T Consensus 70 p~~~~~~~~~~~~g~~Ca~~~a~~~~~~~C--------~vg~~~~~~~~g~~~l~~~------v~~~~~~~~~~~~~~~~ 135 (431)
T KOG3525|consen 70 PEPRCDGTNENKHGTRCAGCVAARANNLTC--------GVGVAYNATIGGIRMLAGC------VSDAVEAPSLGFGPCHI 135 (431)
T ss_pred cccccCCCCccccCCCCCcccccccCCCcC--------CCCcccCccccceeeeeee------cccceecccccCCCCCc
Confidence 122222334588999999999988644332 3799999999999997632 1222222222222 347
Q ss_pred cEEEECcCCCCCC-CC---CcHHHHHHHH-----HHcCCcEEEEccCCCCCCC
Q 046220 283 DVMSLSLGFPETT-FD---ENPIAIGAFA-----ALKKGIFVACSAGNSGPRP 326 (774)
Q Consensus 283 dVIn~SlG~~~~~-~~---~~~~~~a~~~-----a~~~Gi~vV~AAGN~G~~~ 326 (774)
++-+.|||..... .. ......+... ...+|-+.++|.||.|...
T Consensus 136 di~scsw~pddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~ 188 (431)
T KOG3525|consen 136 DIYSCSWGPDDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCG 188 (431)
T ss_pred eeecCcCCcccCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCccccc
Confidence 8999999975421 11 1112222222 2356789999999987543
No 49
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.58 E-value=3.5e-07 Score=84.37 Aligned_cols=96 Identities=14% Similarity=0.169 Sum_probs=75.3
Q ss_pred eEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCC-CCC----CC--CCC
Q 046220 375 REPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSR-QNL----FP--GDF 447 (774)
Q Consensus 375 ~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~-~~~----~~--~~~ 447 (774)
.-++++... ...+.|.+..+...+++|||+|| .|+.|.+.+ |..+++++||.++|++|+.. ... .. ...
T Consensus 18 ~~~lv~~~~-~~~~gC~~~~~~~~~~~GkIvLv--~rg~c~f~~-K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~ 93 (122)
T cd04816 18 TAPLVPLDP-ERPAGCDASDYDGLDVKGAIVLV--DRGGCPFAD-KQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDL 93 (122)
T ss_pred EEEEEEcCC-CCccCCCccccCCCCcCCeEEEE--ECCCCCHHH-HHHHHHHCCCcEEEEEeCCCCccccccccCCCCCC
Confidence 345666432 23478988877778899999999 999999998 99999999999999999832 111 11 345
Q ss_pred cccEEEEccccHHHHHHHHHhCCCcEE
Q 046220 448 DMPFVTVNLNNGELVKKYIINADNATV 474 (774)
Q Consensus 448 ~~p~~~i~~~~g~~l~~~~~~~~~~~~ 474 (774)
.+|+++|+.++|+.|++++..+.+.++
T Consensus 94 ~iP~~~Is~~~G~~l~~~l~~g~~v~~ 120 (122)
T cd04816 94 KVPVGVITKAAGAALRRRLGAGETLEL 120 (122)
T ss_pred eeeEEEEcHHHHHHHHHHHcCCCEEEE
Confidence 699999999999999999987765443
No 50
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=98.52 E-value=7e-07 Score=83.74 Aligned_cols=94 Identities=10% Similarity=0.081 Sum_probs=74.9
Q ss_pred EEccCCCCcccccCCCC--CCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCC--CCCCC----CCCCccc
Q 046220 379 YFGYGNRSKEICEGNST--DPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADS--RQNLF----PGDFDMP 450 (774)
Q Consensus 379 ~~~~~~~~~~~c~~~~~--~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~--~~~~~----~~~~~~p 450 (774)
+........+.|.+... .+.++.|+|+|+ .||.|.|.+ |..+++++||.++|++|+. +.... .....+|
T Consensus 36 ~~~~~~~~~~gC~~~~~~~~~~~~~g~IaLV--~RG~C~F~~-K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip 112 (138)
T cd02122 36 VVPDPPNDHYGCDPDTRFPIPPNGEPWIALI--QRGNCTFEE-KIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIV 112 (138)
T ss_pred ecCCCCCCcCCCCCCccccCCccCCCeEEEE--ECCCCCHHH-HHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcce
Confidence 33334445678988776 567899999999 999999999 9999999999999999983 32221 1234789
Q ss_pred EEEEccccHHHHHHHHHhCCCcEEE
Q 046220 451 FVTVNLNNGELVKKYIINADNATVS 475 (774)
Q Consensus 451 ~~~i~~~~g~~l~~~~~~~~~~~~~ 475 (774)
.++|+..+|+.|++++.++.+.+++
T Consensus 113 ~v~Is~~~G~~l~~~l~~G~~Vtv~ 137 (138)
T cd02122 113 AIMITNPKGMEILELLERGISVTMV 137 (138)
T ss_pred EEEEcHHHHHHHHHHHHcCCcEEEe
Confidence 9999999999999999988766554
No 51
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=98.46 E-value=8.5e-07 Score=81.35 Aligned_cols=85 Identities=18% Similarity=0.262 Sum_probs=68.7
Q ss_pred CcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecC-CCCCCC-----CCCCcccEEEEccccH
Q 046220 386 SKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISAD-SRQNLF-----PGDFDMPFVTVNLNNG 459 (774)
Q Consensus 386 ~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~-~~~~~~-----~~~~~~p~~~i~~~~g 459 (774)
..+.|.+..+. .+++|||+|| .|+.|.+.. |..+++++||.|+|++|+ ...... .....+|+++|+.++|
T Consensus 26 ~~~~C~~~~~~-~~v~GkIvL~--~rg~c~f~~-k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g 101 (118)
T cd04818 26 NTDGCTAFTNA-AAFAGKIALI--DRGTCNFTV-KVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADG 101 (118)
T ss_pred cccccCCCCcC-CCCCCEEEEE--ECCCCCHHH-HHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHH
Confidence 45689887763 4699999999 999999888 999999999999999988 322111 1235799999999999
Q ss_pred HHHHHHHHhCCCcEE
Q 046220 460 ELVKKYIINADNATV 474 (774)
Q Consensus 460 ~~l~~~~~~~~~~~~ 474 (774)
..|++|++.+.+.++
T Consensus 102 ~~l~~~l~~g~~v~v 116 (118)
T cd04818 102 DALKAALAAGGTVTV 116 (118)
T ss_pred HHHHHHHhcCCcEEE
Confidence 999999998765544
No 52
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.46 E-value=9.3e-07 Score=80.17 Aligned_cols=90 Identities=13% Similarity=0.148 Sum_probs=72.5
Q ss_pred ceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCC-CCC-----CCCC
Q 046220 374 SREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQ-NLF-----PGDF 447 (774)
Q Consensus 374 ~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~-~~~-----~~~~ 447 (774)
..+|++... ....|.+..+.+.+++|+|+|+ +||.|.|.+ |..+++++||.++|++|+... ... ....
T Consensus 20 ~~~~~~~~~---~~~gC~~~~~~~~~l~gkIaLV--~RG~CsF~~-K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v 93 (120)
T cd02129 20 TLLPLRNLT---SSVLCSASDVPPGGLKGKAVVV--MRGNCTFYE-KARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKI 93 (120)
T ss_pred cceeeecCC---CcCCCCccccCccccCCeEEEE--ECCCcCHHH-HHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCC
Confidence 456666643 3467998888778899999999 999999999 999999999999999999432 111 1346
Q ss_pred cccEEEEccccHHHHHHHHHhC
Q 046220 448 DMPFVTVNLNNGELVKKYIINA 469 (774)
Q Consensus 448 ~~p~~~i~~~~g~~l~~~~~~~ 469 (774)
.+|+++|+.++|..|++.+.+.
T Consensus 94 ~IP~v~Is~~dG~~i~~~l~~~ 115 (120)
T cd02129 94 DIPVALLSYKDMLDIQQTFGDS 115 (120)
T ss_pred cccEEEEeHHHHHHHHHHhccC
Confidence 7899999999999999887643
No 53
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.45 E-value=1e-06 Score=80.43 Aligned_cols=86 Identities=16% Similarity=0.210 Sum_probs=69.9
Q ss_pred cccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCC-C--CCCC-------CCCCcccEEEEcc
Q 046220 387 KEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADS-R--QNLF-------PGDFDMPFVTVNL 456 (774)
Q Consensus 387 ~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~-~--~~~~-------~~~~~~p~~~i~~ 456 (774)
.+.|.+.. ...+++|+|+|+ +||.|.|.+ |..+++++||.++|++|+. + .... .....+|+++|+.
T Consensus 21 ~~gC~~~~-~~~~~~g~I~Lv--~RG~C~F~~-K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~ 96 (118)
T cd02127 21 LEACEELR-NIHDINGNIALI--ERGGCSFLT-KAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLG 96 (118)
T ss_pred cccCCCCC-CccccCCeEEEE--ECCCCCHHH-HHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecH
Confidence 46798643 356799999999 999999999 9999999999999999983 2 1111 1235789999999
Q ss_pred ccHHHHHHHHHhCCCcEEEE
Q 046220 457 NNGELVKKYIINADNATVSI 476 (774)
Q Consensus 457 ~~g~~l~~~~~~~~~~~~~i 476 (774)
.+|..|++.+..+..+++.+
T Consensus 97 ~dG~~L~~~l~~g~~~~~~~ 116 (118)
T cd02127 97 KNGYMIRKTLERLGLPYAII 116 (118)
T ss_pred HHHHHHHHHHHcCCceEEee
Confidence 99999999999888776654
No 54
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=98.39 E-value=4.4e-06 Score=77.11 Aligned_cols=94 Identities=17% Similarity=0.185 Sum_probs=72.9
Q ss_pred ceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCC----C--CCCCC
Q 046220 374 SREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQN----L--FPGDF 447 (774)
Q Consensus 374 ~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~----~--~~~~~ 447 (774)
..-++++.. ...|.+..+ +.+++|||+|+ +|+.|.+.+ |..+++++||.++|++|+.... . ..+..
T Consensus 22 ~~g~lv~~~----~~gC~~~~~-~~~~~gkIvlv--~rg~c~f~~-K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~ 93 (122)
T cd02130 22 VTGPLVVVP----NLGCDAADY-PASVAGNIALI--ERGECPFGD-KSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGP 93 (122)
T ss_pred cEEEEEEeC----CCCCCcccC-CcCCCCEEEEE--ECCCCCHHH-HHHHHHHCCCcEEEEEECCCCcccccccCCCCCC
Confidence 345666642 357876554 35799999999 999999988 9999999999999999884211 1 11246
Q ss_pred cccEEEEccccHHHHHHHHHhCCCcEEE
Q 046220 448 DMPFVTVNLNNGELVKKYIINADNATVS 475 (774)
Q Consensus 448 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 475 (774)
.+|+++|+.++|..|+..+.++.+.+++
T Consensus 94 ~Ip~v~Is~~~G~~L~~~l~~g~~v~~~ 121 (122)
T cd02130 94 YVPTVGISQEDGKALVAALANGGEVSAN 121 (122)
T ss_pred EeeEEEecHHHHHHHHHHHhcCCcEEEe
Confidence 7999999999999999999988765543
No 55
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=98.34 E-value=2.2e-06 Score=79.33 Aligned_cols=84 Identities=20% Similarity=0.322 Sum_probs=67.4
Q ss_pred cccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecC-CCC-----CCC--------CCCCcccEE
Q 046220 387 KEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISAD-SRQ-----NLF--------PGDFDMPFV 452 (774)
Q Consensus 387 ~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~-~~~-----~~~--------~~~~~~p~~ 452 (774)
.+.|.+... +.+++|||+|+ +||.|.|.+ |..+++++||.++|++|+ ++. ... .+...+|++
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv--~RG~C~f~~-K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v 102 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIM--ERGDCMFVE-KARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVV 102 (126)
T ss_pred hhcccCCCC-ccccCceEEEE--ECCCCcHHH-HHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEE
Confidence 467976543 55789999999 999999998 999999999999999987 331 110 124578999
Q ss_pred EEccccHHHHHHHHHhCCCcEE
Q 046220 453 TVNLNNGELVKKYIINADNATV 474 (774)
Q Consensus 453 ~i~~~~g~~l~~~~~~~~~~~~ 474 (774)
+|+..+|..|++++..+...++
T Consensus 103 ~I~~~dG~~L~~~l~~~~~~~~ 124 (126)
T cd02126 103 FLFSKEGSKLLAAIKEHQNVEV 124 (126)
T ss_pred EEEHHHHHHHHHHHHhCCceEE
Confidence 9999999999999987765443
No 56
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.34 E-value=6.6e-06 Score=76.30 Aligned_cols=95 Identities=13% Similarity=0.113 Sum_probs=70.9
Q ss_pred EeEEEccCC--CCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecC-CCCC--CCCCCCccc
Q 046220 376 EPIYFGYGN--RSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISAD-SRQN--LFPGDFDMP 450 (774)
Q Consensus 376 ~~l~~~~~~--~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~-~~~~--~~~~~~~~p 450 (774)
+|++..... ...+.|.+...+..+++|+|+|+ +||.|.+.+ |..+++++||.++|++|+ ++.. ...+...+|
T Consensus 28 ~p~~~~~~~~~~~~~gC~~~~~~~~~~~g~IaLv--~rg~c~f~~-K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~ 104 (129)
T cd02124 28 LPLWALSLDTSVADDACQPLPDDTPDLSGYIVLV--RRGTCTFAT-KAANAAAKGAKYVLIYNNGSGPTDQVGSDADSII 104 (129)
T ss_pred ceEEEeecccCCCcccCcCCCcccccccCeEEEE--ECCCCCHHH-HHHHHHHcCCcEEEEEECCCCcccccCCCCccee
Confidence 565554432 34578987766666899999999 999999999 999999999999999988 3321 122233456
Q ss_pred EEEEccccHHHHHHHHHhCCCcEE
Q 046220 451 FVTVNLNNGELVKKYIINADNATV 474 (774)
Q Consensus 451 ~~~i~~~~g~~l~~~~~~~~~~~~ 474 (774)
.+.+ .++|+.|++.+..+...++
T Consensus 105 ~~~~-~~~G~~l~~~l~~G~~vtv 127 (129)
T cd02124 105 AAVT-PEDGEAWIDALAAGSNVTV 127 (129)
T ss_pred eEEe-HHHHHHHHHHHhcCCeEEE
Confidence 5555 9999999999987765443
No 57
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=98.33 E-value=2.3e-06 Score=79.29 Aligned_cols=84 Identities=17% Similarity=0.229 Sum_probs=68.3
Q ss_pred cccccCCC--CCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCC--CC--C----CCCCcccEEEEcc
Q 046220 387 KEICEGNS--TDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQ--NL--F----PGDFDMPFVTVNL 456 (774)
Q Consensus 387 ~~~c~~~~--~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~--~~--~----~~~~~~p~~~i~~ 456 (774)
...|.++. +...+++|||+|| .|+.|.+.. |..+++++||.|+|++++... .. . .....+|++.|+.
T Consensus 30 ~~~C~~~~~~~~~~~~~GkIvl~--~~g~~~~~~-k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~ 106 (126)
T cd00538 30 LVGCGYGTTDDSGADVKGKIVLV--RRGGCSFSE-KVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISY 106 (126)
T ss_pred eEEEecCcccccCCCccceEEEE--ECCCcCHHH-HHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCH
Confidence 34687776 6678899999999 999999888 999999999999999988321 11 1 1345799999999
Q ss_pred ccHHHHHHHHHhCCCcE
Q 046220 457 NNGELVKKYIINADNAT 473 (774)
Q Consensus 457 ~~g~~l~~~~~~~~~~~ 473 (774)
++|..|++|+.++.+.+
T Consensus 107 ~~g~~l~~~~~~~~~v~ 123 (126)
T cd00538 107 ADGEALLSLLEAGKTVT 123 (126)
T ss_pred HHHHHHHHHHhcCCceE
Confidence 99999999998765543
No 58
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=9.4e-06 Score=97.14 Aligned_cols=94 Identities=20% Similarity=0.260 Sum_probs=59.1
Q ss_pred eeeecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCCC-cEEEECcCCCCC--C-C--CCcHHHHHHHHHHcCCcEE
Q 046220 242 AIGVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGV-DVMSLSLGFPET--T-F--DENPIAIGAFAALKKGIFV 315 (774)
Q Consensus 242 ~~GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~gv-dVIn~SlG~~~~--~-~--~~~~~~~a~~~a~~~Gi~v 315 (774)
.+-+||+|+|..|-. +. .....+..|+.+...+=+ -+|-.||+.... + + +-+.+......|..+||.+
T Consensus 288 s~A~AP~A~I~lvva--p~----~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi 361 (1174)
T COG4934 288 SHAMAPKANIDLVVA--PN----PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITI 361 (1174)
T ss_pred hhccCccCceEEEEc--CC----CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEE
Confidence 578999999998876 22 233333344433333211 344456665321 1 1 2234455555777899999
Q ss_pred EEccCCCCCCCC--------CccCCCCceEEecc
Q 046220 316 ACSAGNSGPRPY--------SIENGAPWITTVGA 341 (774)
Q Consensus 316 V~AAGN~G~~~~--------~~~~~~p~vitVgA 341 (774)
++|+|.+|.... ..++.+|++++||.
T Consensus 362 ~AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 362 FAASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred EEecccccccCCCcccceeecccCCCccEEeecC
Confidence 999999986553 24568999999997
No 59
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=98.25 E-value=7.6e-06 Score=74.28 Aligned_cols=86 Identities=22% Similarity=0.296 Sum_probs=59.6
Q ss_pred ceEEEEEEEEecCCCceEEEEEEEC--------CCC----------c-EEEEecceEEEecCCceEEEEEEEEeccCCCC
Q 046220 676 ASFTFKRVLTNVAVTRSVYTAVVKA--------PAG----------M-TVAVQPVTLSFDEKHSKAEFNLTVNINLGNDV 736 (774)
Q Consensus 676 ~~~~~~rtv~n~~~~~~ty~~~~~~--------p~g----------~-~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~~~ 736 (774)
...+++.||+|.|+...+|+++... ..| . .+..+|..+++ ++|++++++|+++.+....
T Consensus 8 ~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vti~~p~~~~- 85 (112)
T PF06280_consen 8 NKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVTITPPSGLD- 85 (112)
T ss_dssp SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEEE--GGGH-
T ss_pred CceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEEEEehhcCC-
Confidence 4689999999999999999988751 111 1 67778899999 7999999999999965322
Q ss_pred CCCCCCccEEEEEEEEeeCCeeEEEEEEE
Q 046220 737 SPKRNYLGNFGYLTWFEVNGKHQVRSPIV 765 (774)
Q Consensus 737 ~~~~~~~~~~G~~~~~~~~~~~~v~~P~~ 765 (774)
.....+++|+|.++..++...+++|++
T Consensus 86 --~~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 86 --ASNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp --HTT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred --cccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 013679999999965556679999985
No 60
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.25 E-value=4.5e-06 Score=78.72 Aligned_cols=91 Identities=11% Similarity=0.199 Sum_probs=70.5
Q ss_pred eEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCC-CCCCC-------CCC
Q 046220 375 REPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADS-RQNLF-------PGD 446 (774)
Q Consensus 375 ~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~-~~~~~-------~~~ 446 (774)
..+++... ..+.|.+.. .+++|+|+|+ +||.|.|.+ |..+++++||.++|++|+. +.... ...
T Consensus 39 ~~~lv~~~---~~~gC~~~~---~~~~g~IvLV--~RG~C~F~~-K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~ 109 (139)
T cd02132 39 KTRAVLAN---PLDCCSPST---SKLSGSIALV--ERGECAFTE-KAKIAEAGGASALLIINDQEELYKMVCEDNDTSLN 109 (139)
T ss_pred EEEEEECC---cccccCCCC---cccCCeEEEE--ECCCCCHHH-HHHHHHHcCCcEEEEEECCCcccccccCCCCCCCC
Confidence 44555532 247798654 4799999999 999999998 9999999999999999883 21111 113
Q ss_pred CcccEEEEccccHHHHHHHHHhCCCcEE
Q 046220 447 FDMPFVTVNLNNGELVKKYIINADNATV 474 (774)
Q Consensus 447 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~ 474 (774)
..+|+++|+..+|..|++++.++.+.++
T Consensus 110 ~~IP~v~Is~~~G~~L~~~l~~g~~Vtv 137 (139)
T cd02132 110 ISIPVVMIPQSAGDALNKSLDQGKKVEV 137 (139)
T ss_pred CcEeEEEecHHHHHHHHHHHHcCCcEEE
Confidence 5799999999999999999988766543
No 61
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=98.21 E-value=6.4e-06 Score=76.17 Aligned_cols=86 Identities=16% Similarity=0.225 Sum_probs=67.2
Q ss_pred cccccCCCCC--CC----CcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecC-CCCCC-C-----------CCCC
Q 046220 387 KEICEGNSTD--PR----AVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISAD-SRQNL-F-----------PGDF 447 (774)
Q Consensus 387 ~~~c~~~~~~--~~----~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~-~~~~~-~-----------~~~~ 447 (774)
.+.|.+.... +. ...++|+|+ +||.|.|.+ |..+++++||.++|++|+ ++... . .+..
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv--~RG~C~F~~-K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i 98 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLL--DRGGCFFTL-KAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKI 98 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEE--ECCCcCHHH-HHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCc
Confidence 4678765542 22 367899999 999999999 999999999999999998 33211 1 1234
Q ss_pred cccEEEEccccHHHHHHHHHhCCCcEEE
Q 046220 448 DMPFVTVNLNNGELVKKYIINADNATVS 475 (774)
Q Consensus 448 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 475 (774)
.+|+++|+..+|..|+..+.++...+++
T Consensus 99 ~IP~v~Is~~~G~~L~~~l~~g~~V~v~ 126 (127)
T cd02125 99 TIPSALITKAFGEKLKKAISNGEMVVIK 126 (127)
T ss_pred eEeEEEECHHHHHHHHHHHhcCCeEEEe
Confidence 6899999999999999999988765543
No 62
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=98.18 E-value=6.6e-06 Score=74.88 Aligned_cols=79 Identities=15% Similarity=0.258 Sum_probs=64.1
Q ss_pred CcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecC-CCCCC---C----CCCCcccEEEEccc
Q 046220 386 SKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISAD-SRQNL---F----PGDFDMPFVTVNLN 457 (774)
Q Consensus 386 ~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~-~~~~~---~----~~~~~~p~~~i~~~ 457 (774)
..+.|.+. +..+++|+|+|+ .||+|.|.+ |..+++++||+++|++|+ .+... . .....+|+++++.+
T Consensus 26 p~~gC~~~--~~~~l~gkIvLV--~RG~CsF~~-K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~ 100 (117)
T cd04813 26 PTDACSLQ--EHAEIDGKVALV--LRGGCGFLD-KVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRT 100 (117)
T ss_pred CCCCCCCC--CcCCcCCeEEEE--ECCCCCHHH-HHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHH
Confidence 35789765 557899999999 999999999 999999999999999988 33211 1 22357999999999
Q ss_pred cHHHHHHHHHhC
Q 046220 458 NGELVKKYIINA 469 (774)
Q Consensus 458 ~g~~l~~~~~~~ 469 (774)
++..|+.++...
T Consensus 101 ~g~~L~~l~~~~ 112 (117)
T cd04813 101 SYHLLSSLLPKS 112 (117)
T ss_pred HHHHHHHhcccc
Confidence 999999887543
No 63
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.10 E-value=1.1e-05 Score=75.46 Aligned_cols=71 Identities=18% Similarity=0.293 Sum_probs=58.7
Q ss_pred CCCCcccEEEEEEEeCCCCc-----hhHHHHHHHHhcCceEEEEecCC---CCC--CCCC---CCcccEEEEccccHHHH
Q 046220 396 DPRAVAGKYIFCAFDYKGNI-----TVSQQLEEVRRTRAAGAIISADS---RQN--LFPG---DFDMPFVTVNLNNGELV 462 (774)
Q Consensus 396 ~~~~~~g~iv~~~~~~g~~~-----~~~~~~~~~~~~Ga~g~i~~n~~---~~~--~~~~---~~~~p~~~i~~~~g~~l 462 (774)
...+++|||+|+ +||.|. |.+ |.++++++||.++|+||+. +.. ...+ ...+|++.|++++|+.|
T Consensus 51 ~~~d~~GkIaLI--~RG~c~~~~~~f~~-Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L 127 (139)
T cd04817 51 ICGGMAGKICLI--ERGGNSKSVYPEID-KVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQAL 127 (139)
T ss_pred cCCCcCccEEEE--ECCCCCCCcccHHH-HHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHH
Confidence 345789999999 999999 999 9999999999999999993 321 1122 45899999999999999
Q ss_pred HHHHHhC
Q 046220 463 KKYIINA 469 (774)
Q Consensus 463 ~~~~~~~ 469 (774)
+..+...
T Consensus 128 ~~~l~~~ 134 (139)
T cd04817 128 LAALGQS 134 (139)
T ss_pred HHHhcCC
Confidence 9887543
No 64
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=98.07 E-value=1.4e-05 Score=76.56 Aligned_cols=82 Identities=21% Similarity=0.293 Sum_probs=67.2
Q ss_pred cccccCCCCCC---CCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCCC---CC-----CCCcccEEEEc
Q 046220 387 KEICEGNSTDP---RAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQNL---FP-----GDFDMPFVTVN 455 (774)
Q Consensus 387 ~~~c~~~~~~~---~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~---~~-----~~~~~p~~~i~ 455 (774)
.+.|.+....+ ..+.|+|+|+ +||.|.|.+ |..+++++||.++|++|+..... .. ....+|+++|+
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV--~RG~CtF~~-Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is 126 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLI--RRGNCSFET-KVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVG 126 (153)
T ss_pred cccCCCCcccccccccCCCeEEEE--ECCCCCHHH-HHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEee
Confidence 56898666533 7899999999 999999999 99999999999999999832211 11 14589999999
Q ss_pred cccHHHHHHHHHhCCC
Q 046220 456 LNNGELVKKYIINADN 471 (774)
Q Consensus 456 ~~~g~~l~~~~~~~~~ 471 (774)
..+|..|+.++.....
T Consensus 127 ~~dg~~L~~~l~~~~~ 142 (153)
T cd02123 127 KSTGEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHHHHhcCCc
Confidence 9999999999987654
No 65
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=97.92 E-value=0.00018 Score=66.74 Aligned_cols=90 Identities=11% Similarity=-0.024 Sum_probs=68.5
Q ss_pred CCceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCC--chhHHHHHHHHhcCceEEEEecC-CCCCC----C-
Q 046220 372 FVSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGN--ITVSQQLEEVRRTRAAGAIISAD-SRQNL----F- 443 (774)
Q Consensus 372 ~~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~--~~~~~~~~~~~~~Ga~g~i~~n~-~~~~~----~- 443 (774)
...+.+++|.+.....+ +...+++|||+++ .++.+ .+.. |..+++++||.|+|++|+ ++... .
T Consensus 21 ~~~~~~lV~~g~G~~~d------~~~~~v~GkIvlv--~~g~~~~~~~~-k~~~A~~~GA~avi~~~~~~g~~~~~~~~~ 91 (127)
T cd04819 21 GEAKGEPVDAGYGLPKD------FDGLDLEGKIAVV--KRDDPDVDRKE-KYAKAVAAGAAAFVVVNTVPGVLPATGDEG 91 (127)
T ss_pred CCeeEEEEEeCCCCHHH------cCCCCCCCeEEEE--EcCCCchhHHH-HHHHHHHCCCEEEEEEeCCCCcCccccccc
Confidence 34577888866543222 2345799999999 99988 6777 999999999999999987 34221 0
Q ss_pred ---CCCCcccEEEEccccHHHHHHHHHhCC
Q 046220 444 ---PGDFDMPFVTVNLNNGELVKKYIINAD 470 (774)
Q Consensus 444 ---~~~~~~p~~~i~~~~g~~l~~~~~~~~ 470 (774)
.....+|++.|+.++|..|...++.+.
T Consensus 92 ~~~~~~~~IP~v~Is~edg~~L~~~l~~g~ 121 (127)
T cd04819 92 TEDGPPSPIPAASVSGEDGLRLARVAERND 121 (127)
T ss_pred ccCCCCCCCCEEEEeHHHHHHHHHHHhcCC
Confidence 123579999999999999999987654
No 66
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=96.82 E-value=0.0047 Score=57.83 Aligned_cols=75 Identities=15% Similarity=0.220 Sum_probs=58.8
Q ss_pred CCCcccEEEEEEEeCCCC------chhHHH-------HHHHHhcCceEEEEecC-CCC--------CCC-CCCCcccEEE
Q 046220 397 PRAVAGKYIFCAFDYKGN------ITVSQQ-------LEEVRRTRAAGAIISAD-SRQ--------NLF-PGDFDMPFVT 453 (774)
Q Consensus 397 ~~~~~g~iv~~~~~~g~~------~~~~~~-------~~~~~~~Ga~g~i~~n~-~~~--------~~~-~~~~~~p~~~ 453 (774)
..+++|||++. .++.| .+.. | .+.++++||.++|++|. ++. ... .....+|++.
T Consensus 35 ~~~v~GKIvlv--~~~~~~~~~~~~~~~-k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~ 111 (134)
T cd04815 35 AGAVKGKIVFF--NQPMVRTQTGSGYGP-TVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAA 111 (134)
T ss_pred hhhcCCeEEEe--cCCccccCchhhcCc-hhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEE
Confidence 56899999999 99999 7766 6 68999999999999985 221 111 1235699999
Q ss_pred EccccHHHHHHHHHhCCCcEE
Q 046220 454 VNLNNGELVKKYIINADNATV 474 (774)
Q Consensus 454 i~~~~g~~l~~~~~~~~~~~~ 474 (774)
|+.+++..|...+..+...+.
T Consensus 112 is~ed~~~L~r~l~~g~~v~~ 132 (134)
T cd04815 112 ISVEDADMLERLAARGKPIRV 132 (134)
T ss_pred echhcHHHHHHHHhCCCCeEE
Confidence 999999999999887765443
No 67
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=96.55 E-value=0.0059 Score=57.35 Aligned_cols=62 Identities=19% Similarity=0.140 Sum_probs=52.2
Q ss_pred CceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCC------------------chhHHHHHHHHhcCceEEEE
Q 046220 373 VSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGN------------------ITVSQQLEEVRRTRAAGAII 434 (774)
Q Consensus 373 ~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~------------------~~~~~~~~~~~~~Ga~g~i~ 434 (774)
....++||.+.......|....+...+++|||||+ .++.| .+.. |.++++++||.|+|+
T Consensus 19 ~~~aelVfvGyGi~a~~~~~dDYag~DVkGKIVlv--~~g~P~~~~~~~~~~~~~~~~~~~~~~-K~~~A~~~GA~gvIi 95 (142)
T cd04814 19 IKDAPLVFVGYGIKAPELSWDDYAGLDVKGKVVVV--LRNDPQGEPGAGDFGGKAMTYYGRWTY-KYEEAARHGAAGVLI 95 (142)
T ss_pred ccceeeEEecCCcCCCCCChhhcCCCCCCCcEEEE--EcCCCCcccccccccccccccccCHHH-HHHHHHHCCCcEEEE
Confidence 35678999887766677888888888999999999 88877 3445 999999999999999
Q ss_pred ecC
Q 046220 435 SAD 437 (774)
Q Consensus 435 ~n~ 437 (774)
+++
T Consensus 96 i~~ 98 (142)
T cd04814 96 VHE 98 (142)
T ss_pred EeC
Confidence 998
No 68
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=96.46 E-value=0.019 Score=54.52 Aligned_cols=89 Identities=13% Similarity=0.047 Sum_probs=61.5
Q ss_pred CceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCC------------------CchhHHHHHHHHhcCceEEEE
Q 046220 373 VSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKG------------------NITVSQQLEEVRRTRAAGAII 434 (774)
Q Consensus 373 ~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~------------------~~~~~~~~~~~~~~Ga~g~i~ 434 (774)
..+-++||.+.......|....+..-+++|||||+ .++. |.+.. |..+++..||.|+|+
T Consensus 19 ~vtg~lVfvGyGi~~~~~~~~Dy~giDVkGKIVlv--~~g~P~~~~~~~~~~~~~~~~~~~~~~-K~~~A~~~GA~aVIv 95 (151)
T cd04822 19 AVTAPVVFAGYGITAPELGYDDYAGLDVKGKIVLV--LRHEPQEDDANSRFNGPGLTRHAGLRY-KATNARRHGAAAVIV 95 (151)
T ss_pred CceEeEEEecCCcCccccchhhccCCCCCCeEEEE--EcCCcccccccccccccccccccCHHH-HHHHHHHCCCeEEEE
Confidence 34678899887766777877777788999999999 7663 34455 999999999999999
Q ss_pred ecCCCCC-----CCCCCCcccEEEEccccHHHHHH
Q 046220 435 SADSRQN-----LFPGDFDMPFVTVNLNNGELVKK 464 (774)
Q Consensus 435 ~n~~~~~-----~~~~~~~~p~~~i~~~~g~~l~~ 464 (774)
+++.... .......-..++++....+.+..
T Consensus 96 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (151)
T cd04822 96 VNGPNSHSGDADRLPRFGGTAPQRVDIAAADPWFT 130 (151)
T ss_pred EeCCcccCcccccccccCccceEEechHHHHHHhh
Confidence 9983221 11111122256666665555554
No 69
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=96.43 E-value=0.006 Score=59.67 Aligned_cols=92 Identities=13% Similarity=0.146 Sum_probs=63.2
Q ss_pred CceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCC---CCC--------
Q 046220 373 VSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADS---RQN-------- 441 (774)
Q Consensus 373 ~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~---~~~-------- 441 (774)
..+-+++|.+.....++ ........+++|||+|+ .++.|.+.. |.++|+++||+|+|+|++. ...
T Consensus 28 ~v~g~lVyvn~G~~~Df-~~L~~~gv~v~GkIvLv--r~G~~~~~~-Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g 103 (183)
T cd02128 28 TVTGKLVYANYGRKKDF-EDLQSVGVSVNGSVVLV--RAGKISFAE-KVANAEKLGAVGVLIYPDPADFPIDPSETALFG 103 (183)
T ss_pred ceEEEEEEcCCCCHHHH-HHHHhcCCCCCCeEEEE--ECCCCCHHH-HHHHHHHCCCEEEEEecCHHHcCcccCcceeec
Confidence 34567787643322111 00111245789999999 999998888 9999999999999999882 110
Q ss_pred ---------CC-------------C---CCCcccEEEEccccHHHHHHHHHh
Q 046220 442 ---------LF-------------P---GDFDMPFVTVNLNNGELVKKYIIN 468 (774)
Q Consensus 442 ---------~~-------------~---~~~~~p~~~i~~~~g~~l~~~~~~ 468 (774)
+. . ....||++-|+..++..|++.+.-
T Consensus 104 ~~~~~~GDplTPG~ps~~~~~~~~~~~~~lP~IPs~PIS~~da~~lL~~l~G 155 (183)
T cd02128 104 HVHLGTGDPYTPGFPSFNHTQFPPSQSSGLPNIPAQTISAAAAAKLLSKMGG 155 (183)
T ss_pred ceeccCCCcCCCCCccccccccCcccccCCCCCCEeccCHHHHHHHHHHcCC
Confidence 00 0 123588999999999999988753
No 70
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=96.42 E-value=0.0097 Score=55.52 Aligned_cols=63 Identities=14% Similarity=0.066 Sum_probs=52.1
Q ss_pred CceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCc------------hhHHHHHHHHhcCceEEEEecCC
Q 046220 373 VSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNI------------TVSQQLEEVRRTRAAGAIISADS 438 (774)
Q Consensus 373 ~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~------------~~~~~~~~~~~~Ga~g~i~~n~~ 438 (774)
..+-++||.+.......|....+...+++|||||+ .++.|. +.. |.++++++||.|+|+++++
T Consensus 21 ~v~gelVfvGyG~~~~~~~~~Dy~~iDVkGKIVlv--~~g~p~~~~~~~~~~~~~~~~-K~~~A~~~GA~aVIi~~d~ 95 (137)
T cd04820 21 SVEAPLVFVGYGLVAPELGHDDYAGLDVKGKIVVV--LSGGPAGIPSEEGAHAHSSNE-KARYAAKAGAIGMITLTTP 95 (137)
T ss_pred CceEeEEEecCCcCccCcCHhhccCCCCCCeEEEE--EcCCCCccccccccccccHHH-HHHHHHHCCCeEEEEEeCC
Confidence 34678898887766678887777788999999999 888763 445 9999999999999999984
No 71
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=95.54 E-value=0.24 Score=43.73 Aligned_cols=81 Identities=14% Similarity=0.131 Sum_probs=60.4
Q ss_pred ceEEEEEEEEecCCCceEEEEEEECCCCcEEEEecceEEEecCCceEEEEEEEEeccCCCCCCCCCCccEEEEEEEEeeC
Q 046220 676 ASFTFKRVLTNVAVTRSVYTAVVKAPAGMTVAVQPVTLSFDEKHSKAEFNLTVNINLGNDVSPKRNYLGNFGYLTWFEVN 755 (774)
Q Consensus 676 ~~~~~~rtv~n~~~~~~ty~~~~~~p~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 755 (774)
.....+.+|+|.|..+..|++.......-.++++|..=.+ ++|++.++.|++.... . .+.+.+.|... ..
T Consensus 20 ~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~~-~-------~g~~~~~l~i~-~e 89 (102)
T PF14874_consen 20 QTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSPTK-P-------LGDYEGSLVIT-TE 89 (102)
T ss_pred CEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEeCC-C-------CceEEEEEEEE-EC
Confidence 5678889999999999999987654334567778877667 7999999999999654 1 34678888772 34
Q ss_pred CeeEEEEEEEEE
Q 046220 756 GKHQVRSPIVSA 767 (774)
Q Consensus 756 ~~~~v~~P~~~~ 767 (774)
+ ..+.+|+-+.
T Consensus 90 ~-~~~~i~v~a~ 100 (102)
T PF14874_consen 90 G-GSFEIPVKAE 100 (102)
T ss_pred C-eEEEEEEEEE
Confidence 4 4677777654
No 72
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=95.43 E-value=0.046 Score=59.89 Aligned_cols=77 Identities=13% Similarity=0.176 Sum_probs=63.5
Q ss_pred CCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCC--------CCCCCCCCCcccEEEEccccHHHHHHHHHh
Q 046220 397 PRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADS--------RQNLFPGDFDMPFVTVNLNNGELVKKYIIN 468 (774)
Q Consensus 397 ~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~--------~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~ 468 (774)
....++|+++. .||.|.|.+ |...++++||.++++.|+. ++........||++++.+++++.+.....+
T Consensus 91 ~~kl~~~~~~v--~RGnC~Ft~-Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~ 167 (541)
T KOG2442|consen 91 QSKLSGKVALV--FRGNCSFTE-KAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRS 167 (541)
T ss_pred CccccceeEEE--ecccceeeh-hhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhcc
Confidence 45688999999 999999999 9999999999999999981 233334467899999999999999987666
Q ss_pred CCCcEEEE
Q 046220 469 ADNATVSI 476 (774)
Q Consensus 469 ~~~~~~~i 476 (774)
+.+.++.+
T Consensus 168 ~~~V~~~l 175 (541)
T KOG2442|consen 168 NDNVELAL 175 (541)
T ss_pred CCeEEEEE
Confidence 66655544
No 73
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=94.78 E-value=0.12 Score=43.41 Aligned_cols=59 Identities=17% Similarity=0.235 Sum_probs=38.8
Q ss_pred ceEEEEEEEEecCCCc-eEEEEEEECCCCcEEEEecceEEEecCCceEEEEEEEEeccCC
Q 046220 676 ASFTFKRVLTNVAVTR-SVYTAVVKAPAGMTVAVQPVTLSFDEKHSKAEFNLTVNINLGN 734 (774)
Q Consensus 676 ~~~~~~rtv~n~~~~~-~ty~~~~~~p~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~ 734 (774)
...+++.+|+|.|..+ ...++++..|+|-.+...|..+.--++|++++++++|+++...
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a 64 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPADA 64 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT-
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCCC
Confidence 5789999999999765 4688999999999988888887644899999999999998643
No 74
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=93.68 E-value=0.12 Score=48.61 Aligned_cols=61 Identities=7% Similarity=0.018 Sum_probs=45.3
Q ss_pred CceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCC
Q 046220 373 VSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADS 438 (774)
Q Consensus 373 ~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~ 438 (774)
+.+-++||.+.....++-.-.. .-+++|||+|+ ..|...+.. |.++|+..||.|+|+|.++
T Consensus 14 ~Vtg~~VYvNyG~~eDf~~L~~--~V~v~GkIvi~--RyG~~~RG~-Kv~~A~~~GA~GviIYsDP 74 (153)
T cd02131 14 TLQAEVVDVQYGSVEDLRRIRD--NMNVTNQIALL--KLGQAPLLY-KLSLLEEAGFGGVLLYVDP 74 (153)
T ss_pred ceEEEEEEecCCCHHHHHHHHh--CCCccceEEEE--eccCcchHH-HHHHHHHCCCeEEEEecCh
Confidence 3466778866554433322111 25799999999 888888888 9999999999999999883
No 75
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=92.96 E-value=0.2 Score=50.80 Aligned_cols=61 Identities=16% Similarity=0.183 Sum_probs=43.6
Q ss_pred CceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecC
Q 046220 373 VSREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISAD 437 (774)
Q Consensus 373 ~~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~ 437 (774)
..+-++||.+.....+.- ......-+++|||+|+ .++.+.+.. |.++|+.+||+|+|++++
T Consensus 44 ~v~g~lVyvnyG~~~D~~-~L~~~gvdv~GKIvLv--r~G~~~~~~-Kv~~A~~~GA~gVIiy~D 104 (220)
T cd02121 44 NVTAELVYANYGSPEDFE-YLEDLGIDVKGKIVIA--RYGGIFRGL-KVKNAQLAGAVGVIIYSD 104 (220)
T ss_pred CceEEEEEcCCCcHHHHH-HHhhcCCCCCCeEEEE--ECCCccHHH-HHHHHHHcCCEEEEEEeC
Confidence 346788886532221110 0001246799999999 888887777 999999999999999988
No 76
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=92.62 E-value=2.7 Score=38.23 Aligned_cols=58 Identities=17% Similarity=0.129 Sum_probs=41.9
Q ss_pred ceEEEEEEEEecCCCceEEEEEEECCCCcEEEEecceEEEecCCceEEEEEEEEeccCC
Q 046220 676 ASFTFKRVLTNVAVTRSVYTAVVKAPAGMTVAVQPVTLSFDEKHSKAEFNLTVNINLGN 734 (774)
Q Consensus 676 ~~~~~~rtv~n~~~~~~ty~~~~~~p~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~ 734 (774)
-.-..+.+|+|....+.+|++++..++|+.+......+.+ ++|++.++.|.|..+...
T Consensus 31 I~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p~~~ 88 (118)
T PF11614_consen 31 IRNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTAPPDA 88 (118)
T ss_dssp EEEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-GGG
T ss_pred EEEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEECHHH
Confidence 3457788999999999999999999889999666688999 799999999999998743
No 77
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=91.04 E-value=0.29 Score=45.63 Aligned_cols=98 Identities=9% Similarity=0.054 Sum_probs=70.4
Q ss_pred eEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecC-CCC-C----------C
Q 046220 375 REPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISAD-SRQ-N----------L 442 (774)
Q Consensus 375 ~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~-~~~-~----------~ 442 (774)
.+++|.+ +...+|.... +.-...+.+++. +||.|+|.. |..++.++||..+|+..+ +.+ . .
T Consensus 65 ~~~lV~a---dPp~aC~elr-N~~f~~d~vaL~--eRGeCSFl~-Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~ 137 (193)
T KOG3920|consen 65 NLELVLA---DPPHACEELR-NEIFAPDSVALM--ERGECSFLV-KTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDE 137 (193)
T ss_pred Ccceeec---CChhHHHHHh-hcccCCCcEEEE--ecCCceeee-hhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcc
Confidence 4455553 3456775432 234567889999 999999999 999999999999999876 221 1 1
Q ss_pred CCCCCcccEEEEccccHHHHHHHHHhCCCcEEEEEec
Q 046220 443 FPGDFDMPFVTVNLNNGELVKKYIINADNATVSIKFQ 479 (774)
Q Consensus 443 ~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~ 479 (774)
.-+...+|++++-..+|..+...+......-+.|..+
T Consensus 138 sq~~AniPa~fllg~~Gy~ir~sL~r~~r~ha~i~IP 174 (193)
T KOG3920|consen 138 SQDRANIPAVFLLGVTGYYIRVSLKRYFRDHAKIDIP 174 (193)
T ss_pred cccccCCceEEEeccceEEEehhHHHhCCccEEEecc
Confidence 1235789999999999988887777766655555443
No 78
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.66 E-value=1.3 Score=47.73 Aligned_cols=80 Identities=16% Similarity=0.226 Sum_probs=61.2
Q ss_pred cccccCCCC---CCCCcccEEEEEEEeCCCCchhHHHHHHHHhcCceEEEEecCCCCC--C----CCCCCcccEEEEccc
Q 046220 387 KEICEGNST---DPRAVAGKYIFCAFDYKGNITVSQQLEEVRRTRAAGAIISADSRQN--L----FPGDFDMPFVTVNLN 457 (774)
Q Consensus 387 ~~~c~~~~~---~~~~~~g~iv~~~~~~g~~~~~~~~~~~~~~~Ga~g~i~~n~~~~~--~----~~~~~~~p~~~i~~~ 457 (774)
.++|.+... ........+++. .||+|.|.+ |..+|+.+|..++|+||+.+.. . ......+++++++..
T Consensus 62 ~~aC~~i~~~p~~~~~~~~~laLI--~Rg~CsFe~-Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~ 138 (348)
T KOG4628|consen 62 LNACNPITNFPEHSTRSTSFLALI--RRGGCSFED-KVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVF 138 (348)
T ss_pred ccccCccccCccCCCCCcceEEEE--EccCCchHH-HHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeee
Confidence 367765433 234456678999 999999999 9999999999999999983332 1 233577889999999
Q ss_pred cHHHHHHHHHhC
Q 046220 458 NGELVKKYIINA 469 (774)
Q Consensus 458 ~g~~l~~~~~~~ 469 (774)
.|+.+.+|....
T Consensus 139 ~ge~l~~~~~~~ 150 (348)
T KOG4628|consen 139 SGELLSSYAGRT 150 (348)
T ss_pred hHHHHHHhhccc
Confidence 999999876544
No 79
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=88.03 E-value=19 Score=32.81 Aligned_cols=54 Identities=11% Similarity=-0.003 Sum_probs=41.7
Q ss_pred eEEEEEEEEecCCCceEEEEEEEC---CCC----cEEEEecceEEEecCCceEEEEEEEEecc
Q 046220 677 SFTFKRVLTNVAVTRSVYTAVVKA---PAG----MTVAVQPVTLSFDEKHSKAEFNLTVNINL 732 (774)
Q Consensus 677 ~~~~~rtv~n~~~~~~ty~~~~~~---p~g----~~v~v~p~~l~~~~~~~~~~~~vt~~~~~ 732 (774)
....+.+|+|.++.+..+.+.+.. .++ -.+-|+|..+.+ ++|+++.+.| +....
T Consensus 15 ~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L-~pg~~q~vRv-~~~~~ 75 (122)
T PF00345_consen 15 QRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRL-EPGESQTVRV-YRGSK 75 (122)
T ss_dssp SSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEE-ETTEEEEEEE-EECSG
T ss_pred CCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEe-CCCCcEEEEE-EecCC
Confidence 457789999999987777777764 111 257799999999 7999999999 76443
No 80
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=87.88 E-value=1.3 Score=42.55 Aligned_cols=62 Identities=21% Similarity=0.132 Sum_probs=41.9
Q ss_pred ceEeEEEccCCCCcccccCCCCCCCCcccEEEEEEEeCCCC------------------chhHHHHHHHHhcCceEEEEe
Q 046220 374 SREPIYFGYGNRSKEICEGNSTDPRAVAGKYIFCAFDYKGN------------------ITVSQQLEEVRRTRAAGAIIS 435 (774)
Q Consensus 374 ~~~~l~~~~~~~~~~~c~~~~~~~~~~~g~iv~~~~~~g~~------------------~~~~~~~~~~~~~Ga~g~i~~ 435 (774)
..-++||.+.......-....+..-|++||||++ ..+.- .+...|.+.+++.||.|+|++
T Consensus 22 ~~~elVFvGyGi~ape~~~dDy~g~DVkGKiVvv--l~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v 99 (157)
T cd04821 22 KDSPLVFVGYGIVAPEYGWDDYKGLDVKGKTVVI--LVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIV 99 (157)
T ss_pred ccCCEEEeccCccCcccCcccccCCCcCCcEEEE--EcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEE
Confidence 4557777665433322223355567899999999 65432 122348999999999999999
Q ss_pred cC
Q 046220 436 AD 437 (774)
Q Consensus 436 n~ 437 (774)
+.
T Consensus 100 ~~ 101 (157)
T cd04821 100 HE 101 (157)
T ss_pred eC
Confidence 76
No 81
>COG1470 Predicted membrane protein [Function unknown]
Probab=87.01 E-value=6.5 Score=43.65 Aligned_cols=60 Identities=17% Similarity=0.188 Sum_probs=52.7
Q ss_pred ceEEEEEEEEecCCCceE-EEEEEECCCCcEEEEecceEEEecCCceEEEEEEEEeccCCC
Q 046220 676 ASFTFKRVLTNVAVTRSV-YTAVVKAPAGMTVAVQPVTLSFDEKHSKAEFNLTVNINLGND 735 (774)
Q Consensus 676 ~~~~~~rtv~n~~~~~~t-y~~~~~~p~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~~ 735 (774)
...+....+.|.|+.+.| -.+++..|.|-.+.|+|.++---+++|++++++|++++....
T Consensus 397 ee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~ 457 (513)
T COG1470 397 EEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAG 457 (513)
T ss_pred ccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCC
Confidence 467888999999998765 679999999999999999887779999999999999987554
No 82
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=86.27 E-value=17 Score=33.24 Aligned_cols=68 Identities=12% Similarity=0.113 Sum_probs=50.7
Q ss_pred ceEEEEEEEEecCCCceEEEEEEEC----CCCc--------------------EEEEecceEEEecCCceEEEEEEEEec
Q 046220 676 ASFTFKRVLTNVAVTRSVYTAVVKA----PAGM--------------------TVAVQPVTLSFDEKHSKAEFNLTVNIN 731 (774)
Q Consensus 676 ~~~~~~rtv~n~~~~~~ty~~~~~~----p~g~--------------------~v~v~p~~l~~~~~~~~~~~~vt~~~~ 731 (774)
.+.+++.+|+|.++.+.+|.+.+.. ..|+ -|++ |..+++ +++|+++++++|+.+
T Consensus 27 q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl-~~~~sk~V~~~i~~P 104 (121)
T PF06030_consen 27 QKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTL-PPNESKTVTFTIKMP 104 (121)
T ss_pred CEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEE-CCCCEEEEEEEEEcC
Confidence 6889999999999999999988631 1110 1222 334788 799999999999998
Q ss_pred cCCCCCCCCCCccEEEEEEE
Q 046220 732 LGNDVSPKRNYLGNFGYLTW 751 (774)
Q Consensus 732 ~~~~~~~~~~~~~~~G~~~~ 751 (774)
.... .+.+-|.|.+
T Consensus 105 ~~~f------~G~ilGGi~~ 118 (121)
T PF06030_consen 105 KKAF------DGIILGGIYF 118 (121)
T ss_pred CCCc------CCEEEeeEEE
Confidence 8655 6777787877
No 83
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=82.05 E-value=0.95 Score=53.72 Aligned_cols=52 Identities=12% Similarity=0.031 Sum_probs=36.9
Q ss_pred EecceEEEecCCceEEEEEEEEeccCCCCCCCCCCccEEEEEEEEee---CCeeEEEEEEEEEE
Q 046220 708 VQPVTLSFDEKHSKAEFNLTVNINLGNDVSPKRNYLGNFGYLTWFEV---NGKHQVRSPIVSAF 768 (774)
Q Consensus 708 v~p~~l~~~~~~~~~~~~vt~~~~~~~~~~~~~~~~~~~G~~~~~~~---~~~~~v~~P~~~~~ 768 (774)
-.|+.|.+ .++.+.+.|+|++.... .+..++.|.=..+ ...+.+|+|+.|.-
T Consensus 634 q~p~~l~l--~~~~R~i~VrVDpt~l~-------~G~hy~eV~gyD~~~p~~gplFrIPVTVi~ 688 (1304)
T KOG1114|consen 634 QCPEYLML--ANQGRGINVRVDPTGLA-------PGVHYTEVLGYDTANPSRGPLFRIPVTVIK 688 (1304)
T ss_pred eCchhhee--ccCCceeEEEECCcCCC-------CCcceEEEEEeecCCcccCceEEeeeEEEc
Confidence 34666666 67888999999988733 4566666666433 35799999998764
No 84
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=79.14 E-value=11 Score=42.66 Aligned_cols=56 Identities=11% Similarity=0.103 Sum_probs=48.6
Q ss_pred ceEEEEEEEEecCCCceEEEEEEECCCCcEEEEecceEEEecCCceEEEEEEEEecc
Q 046220 676 ASFTFKRVLTNVAVTRSVYTAVVKAPAGMTVAVQPVTLSFDEKHSKAEFNLTVNINL 732 (774)
Q Consensus 676 ~~~~~~rtv~n~~~~~~ty~~~~~~p~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~ 732 (774)
..-..+.++.|.+..+.+|+++++.+++..+...+..+++ +++|+.++.|+|..+.
T Consensus 346 i~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v-~~g~~~~~~v~v~~~~ 401 (434)
T TIGR02745 346 VENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHV-KAGEKVKLPVFLRTPP 401 (434)
T ss_pred EEEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEE-CCCCEEEEEEEEEech
Confidence 3557778999999999999999999999988876557899 7999999999998875
No 85
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=73.94 E-value=25 Score=31.03 Aligned_cols=54 Identities=17% Similarity=0.107 Sum_probs=40.9
Q ss_pred ceEEEEEEEEecCCCceEEEEEEECCCCcEEEEecceEEEecCCceEEEEEEEEecc
Q 046220 676 ASFTFKRVLTNVAVTRSVYTAVVKAPAGMTVAVQPVTLSFDEKHSKAEFNLTVNINL 732 (774)
Q Consensus 676 ~~~~~~rtv~n~~~~~~ty~~~~~~p~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~ 732 (774)
.......+|+|.++.+.-|++....|... .|.|..-.+ +++++.++.|++....
T Consensus 18 ~~~~~~l~l~N~s~~~i~fKiktt~~~~y--~v~P~~G~i-~p~~~~~i~I~~~~~~ 71 (109)
T PF00635_consen 18 KQQSCELTLTNPSDKPIAFKIKTTNPNRY--RVKPSYGII-EPGESVEITITFQPFD 71 (109)
T ss_dssp S-EEEEEEEEE-SSSEEEEEEEES-TTTE--EEESSEEEE--TTEEEEEEEEE-SSS
T ss_pred ceEEEEEEEECCCCCcEEEEEEcCCCceE--EecCCCEEE-CCCCEEEEEEEEEecc
Confidence 45777889999999999999998888755 467997777 7999999999888754
No 86
>COG1470 Predicted membrane protein [Function unknown]
Probab=73.72 E-value=55 Score=36.69 Aligned_cols=58 Identities=16% Similarity=0.245 Sum_probs=47.8
Q ss_pred ceEEEEEEEEecCCCceEEEEEEE-CCCCcEEEEecc-----eEEEecCCceEEEEEEEEeccCC
Q 046220 676 ASFTFKRVLTNVAVTRSVYTAVVK-APAGMTVAVQPV-----TLSFDEKHSKAEFNLTVNINLGN 734 (774)
Q Consensus 676 ~~~~~~rtv~n~~~~~~ty~~~~~-~p~g~~v~v~p~-----~l~~~~~~~~~~~~vt~~~~~~~ 734 (774)
.+..+++++.|.|....+|.++.. .|+|-.....-. ++.+ .+||++.++|.|.++...
T Consensus 284 ~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL-~~gE~kdvtleV~ps~na 347 (513)
T COG1470 284 TTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKL-KPGEEKDVTLEVYPSLNA 347 (513)
T ss_pred CceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEe-cCCCceEEEEEEecCCCC
Confidence 467899999999999999999998 898877766544 3455 699999999999987643
No 87
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=58.02 E-value=83 Score=29.52 Aligned_cols=67 Identities=13% Similarity=0.241 Sum_probs=49.7
Q ss_pred eEEEEEEEEecCCCc-eEEEEEEECCCCcEEEEecceEEEecCCceEEEEEEEEeccCCCCCCCCCCccEEEEEEE
Q 046220 677 SFTFKRVLTNVAVTR-SVYTAVVKAPAGMTVAVQPVTLSFDEKHSKAEFNLTVNINLGNDVSPKRNYLGNFGYLTW 751 (774)
Q Consensus 677 ~~~~~rtv~n~~~~~-~ty~~~~~~p~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~~~~~~~~~~~~~G~~~~ 751 (774)
...+...|-|..+.. ..-+++...-.++++--.|..+++ .+++.++++.++++.. .. .+++||.|+|
T Consensus 70 DIvLDvllvNqT~~tLqNl~vElat~gdLklve~p~~~tL-~P~~~~~i~~~iKVsS-te------tGvIfG~I~Y 137 (140)
T PF07718_consen 70 DIVLDVLLVNQTNETLQNLTVELATLGDLKLVERPQPITL-APHGFARIKATIKVSS-TE------TGVIFGNIVY 137 (140)
T ss_pred eEEEEEEEEeCChhhhhcEEEEEEecCCcEEccCCCceee-CCCcEEEEEEEEEEEe-cc------CCEEEEEEEE
Confidence 345556666765532 234555555667888778999999 7999999999999987 33 6899999998
No 88
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=53.78 E-value=36 Score=28.49 Aligned_cols=38 Identities=29% Similarity=0.323 Sum_probs=28.1
Q ss_pred EEEEecceEEEecCCceEEEEEEEEeccCCCCCCCCCCccEEEEEEEEe
Q 046220 705 TVAVQPVTLSFDEKHSKAEFNLTVNINLGNDVSPKRNYLGNFGYLTWFE 753 (774)
Q Consensus 705 ~v~v~p~~l~~~~~~~~~~~~vt~~~~~~~~~~~~~~~~~~~G~~~~~~ 753 (774)
.+++.|..+++ ..|+++.|+++++... ... ...+.|.+
T Consensus 4 ~i~i~p~~~~l-~~G~~~~l~a~~~~~~---------~~~-~~~v~w~S 41 (81)
T smart00635 4 SVTVTPTTASV-KKGLTLQLTATVTPSS---------AKV-TGKVTWTS 41 (81)
T ss_pred EEEEeCCeeEE-eCCCeEEEEEEEECCC---------CCc-cceEEEEE
Confidence 57889999999 6999999999976543 112 66788843
No 89
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=51.47 E-value=76 Score=27.07 Aligned_cols=52 Identities=17% Similarity=0.142 Sum_probs=32.2
Q ss_pred ceEEEEEEEEecCCCc-eEEEEEEECCCCcEEEEecceE-EEecCCceEEEEEEEEec
Q 046220 676 ASFTFKRVLTNVAVTR-SVYTAVVKAPAGMTVAVQPVTL-SFDEKHSKAEFNLTVNIN 731 (774)
Q Consensus 676 ~~~~~~rtv~n~~~~~-~ty~~~~~~p~g~~v~v~p~~l-~~~~~~~~~~~~vt~~~~ 731 (774)
...+++.+|+|.|... ..+.+.+... |..+ .-..+ .+ ++|+++++++++...
T Consensus 19 ~~~~i~~~V~N~G~~~~~~~~v~~~~~-~~~~--~~~~i~~L-~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 19 EPVTITVTVKNNGTADAENVTVRLYLD-GNSV--STVTIPSL-APGESETVTFTWTPP 72 (101)
T ss_dssp SEEEEEEEEEE-SSS-BEEEEEEEEET-TEEE--EEEEESEB--TTEEEEEEEEEE-S
T ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEC-Ccee--ccEEECCc-CCCcEEEEEEEEEeC
Confidence 6789999999999864 5677776543 3333 22223 55 678888887777776
No 90
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=49.08 E-value=1e+02 Score=27.23 Aligned_cols=55 Identities=15% Similarity=0.199 Sum_probs=37.4
Q ss_pred ceEEEEEEEEecCCCc-eEEE-----EEEECCCCcE---EEEecceEEEecCCceEEEEEEEEecc
Q 046220 676 ASFTFKRVLTNVAVTR-SVYT-----AVVKAPAGMT---VAVQPVTLSFDEKHSKAEFNLTVNINL 732 (774)
Q Consensus 676 ~~~~~~rtv~n~~~~~-~ty~-----~~~~~p~g~~---v~v~p~~l~~~~~~~~~~~~vt~~~~~ 732 (774)
...++..+++|..+.. .+-+ .++.. .|+. .......+++ +++++.++++++....
T Consensus 15 ~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~y-tG~~~~~~~~~~~~~~l-~p~~~~~~~~~i~p~~ 78 (107)
T PF00927_consen 15 QDFTVSVSFTNPSSEPLRNVSLNLCAFTVEY-TGLTRDQFKKEKFEVTL-KPGETKSVEVTITPSQ 78 (107)
T ss_dssp SEEEEEEEEEE-SSS-EECEEEEEEEEEEEC-TTTEEEEEEEEEEEEEE--TTEEEEEEEEE-HHS
T ss_pred CCEEEEEEEEeCCcCccccceeEEEEEEEEE-CCcccccEeEEEcceee-CCCCEEEEEEEEEcee
Confidence 6789999999999877 5522 23333 4664 5666667788 7999999999998866
No 91
>PLN03080 Probable beta-xylosidase; Provisional
Probab=43.87 E-value=54 Score=40.15 Aligned_cols=84 Identities=13% Similarity=0.080 Sum_probs=46.7
Q ss_pred eEEEEEEEEecCCCceEEEEEE--ECCCC-cEE----EEecceEEEecCCceEEEEEEEEe-ccCCCCCCCCCCcc--EE
Q 046220 677 SFTFKRVLTNVAVTRSVYTAVV--KAPAG-MTV----AVQPVTLSFDEKHSKAEFNLTVNI-NLGNDVSPKRNYLG--NF 746 (774)
Q Consensus 677 ~~~~~rtv~n~~~~~~ty~~~~--~~p~g-~~v----~v~p~~l~~~~~~~~~~~~vt~~~-~~~~~~~~~~~~~~--~~ 746 (774)
..+++++|||+|+-.....+++ ..|.. +.. =+--.++.+ ++||+++++++++. .. ...|-.. +.| ..
T Consensus 685 ~~~v~v~VtNtG~~~G~evvQlYv~~p~~~~~~P~k~L~gF~kv~L-~~Ges~~V~~~l~~~~~-ls~~d~~-~~~~v~~ 761 (779)
T PLN03080 685 RFNVHISVSNVGEMDGSHVVMLFSRSPPVVPGVPEKQLVGFDRVHT-ASGRSTETEIVVDPCKH-LSVANEE-GKRVLPL 761 (779)
T ss_pred eEEEEEEEEECCcccCcEEEEEEEecCccCCCCcchhccCcEeEee-CCCCEEEEEEEeCchHH-ceEEcCC-CcEEEeC
Confidence 5789999999998665555543 33422 110 001123455 79999999888876 33 2211111 222 24
Q ss_pred EEEEEEeeCCeeEEEEE
Q 046220 747 GYLTWFEVNGKHQVRSP 763 (774)
Q Consensus 747 G~~~~~~~~~~~~v~~P 763 (774)
|...+.-.+..|.|+++
T Consensus 762 G~y~l~vG~~~~~~~~~ 778 (779)
T PLN03080 762 GDHVLMLGDLEHSLSIE 778 (779)
T ss_pred ccEEEEEeCCccceEEe
Confidence 65555334566776654
No 92
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=43.37 E-value=18 Score=31.63 Aligned_cols=13 Identities=38% Similarity=0.542 Sum_probs=6.5
Q ss_pred CcchHHHHHHHHHH
Q 046220 1 MGSFTGFILMILSI 14 (774)
Q Consensus 1 M~~~~~~~~~~~~~ 14 (774)
|.+++ |+||.|++
T Consensus 1 MaSK~-~llL~l~L 13 (95)
T PF07172_consen 1 MASKA-FLLLGLLL 13 (95)
T ss_pred CchhH-HHHHHHHH
Confidence 76444 55554443
No 93
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=38.65 E-value=1.5e+02 Score=24.99 Aligned_cols=54 Identities=19% Similarity=0.172 Sum_probs=24.7
Q ss_pred EEEEEEEEecCCCceE--------EEEEEECCCCc---------EEEEecceEEEecCCceEEEEEEEEecc
Q 046220 678 FTFKRVLTNVAVTRSV--------YTAVVKAPAGM---------TVAVQPVTLSFDEKHSKAEFNLTVNINL 732 (774)
Q Consensus 678 ~~~~rtv~n~~~~~~t--------y~~~~~~p~g~---------~v~v~p~~l~~~~~~~~~~~~vt~~~~~ 732 (774)
+.++.+|+|.++.+.+ |-+.+..+.|- -++---...++ ++||+++|+.+++...
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l-~pGe~~~~~~~~~~~~ 72 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETL-EPGESLTYEETWDLKD 72 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE--TT-EEEEEEEESS--
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEE-CCCCEEEEEEEECCCC
Confidence 3566777777765432 44444433333 33333345667 6889988887776554
No 94
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=38.62 E-value=90 Score=38.24 Aligned_cols=54 Identities=9% Similarity=0.180 Sum_probs=35.3
Q ss_pred ceEEEEEEEEecCCCceEEEEEE--ECCCCcEEEEec-------ceEEEecCCceEEEEEEEEecc
Q 046220 676 ASFTFKRVLTNVAVTRSVYTAVV--KAPAGMTVAVQP-------VTLSFDEKHSKAEFNLTVNINL 732 (774)
Q Consensus 676 ~~~~~~rtv~n~~~~~~ty~~~~--~~p~g~~v~v~p-------~~l~~~~~~~~~~~~vt~~~~~ 732 (774)
...+++++|+|+|+-...-.+++ ..|.+- +. .| .++.+ ++||+++++++++...
T Consensus 667 ~~i~v~v~V~NtG~~~G~EVvQlYv~~~~~~-~~-~P~k~L~gF~Kv~L-~pGes~~V~~~l~~~~ 729 (765)
T PRK15098 667 GKVTASVTVTNTGKREGATVVQLYLQDVTAS-MS-RPVKELKGFEKIML-KPGETQTVSFPIDIEA 729 (765)
T ss_pred CeEEEEEEEEECCCCCccEEEEEeccCCCCC-CC-CHHHhccCceeEeE-CCCCeEEEEEeecHHH
Confidence 46899999999998654444443 344321 11 12 23456 7999999999988765
No 95
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=36.83 E-value=34 Score=24.73 Aligned_cols=24 Identities=8% Similarity=0.180 Sum_probs=19.2
Q ss_pred HHHHHHhcCCCCHHHHHHHHHccc
Q 046220 558 ATLLKATHHEWSSAAIRSAMMTTA 581 (774)
Q Consensus 558 aALl~~~~P~~s~~~ik~~L~~TA 581 (774)
+--|++.+|+|++..|+..|...-
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~~ 28 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQANN 28 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcC
Confidence 346889999999999999997654
No 96
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=33.39 E-value=20 Score=16.43 Aligned_cols=6 Identities=50% Similarity=0.817 Sum_probs=4.3
Q ss_pred cccCCC
Q 046220 493 KFSSRG 498 (774)
Q Consensus 493 ~fSS~G 498 (774)
.|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 577776
No 97
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=32.77 E-value=1.2e+02 Score=32.96 Aligned_cols=79 Identities=15% Similarity=0.224 Sum_probs=37.7
Q ss_pred ceEEEEEEEEecCCCceE---EE---EEEECC----------------CCcEEEEecceEEEecCCceEEEEEEEEecc-
Q 046220 676 ASFTFKRVLTNVAVTRSV---YT---AVVKAP----------------AGMTVAVQPVTLSFDEKHSKAEFNLTVNINL- 732 (774)
Q Consensus 676 ~~~~~~rtv~n~~~~~~t---y~---~~~~~p----------------~g~~v~v~p~~l~~~~~~~~~~~~vt~~~~~- 732 (774)
.+.+++.+|||.|+.+.. |. +....| .| ++|+|+. -+ .+||+++++|+++-..
T Consensus 263 R~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~g--L~vs~~~-pI-~PGETrtl~V~a~dA~W 338 (381)
T PF04744_consen 263 RTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERG--LSVSDNS-PI-APGETRTLTVEAQDAAW 338 (381)
T ss_dssp SEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT---EEES--S--B--TT-EEEEEEEEE-HHH
T ss_pred cEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCc--ceeCCCC-Cc-CCCceEEEEEEeehhHH
Confidence 688999999999987632 21 121111 23 3445542 23 6899999988885421
Q ss_pred CCC-CC-CCCCCccEEEEEEEE-eeCCee
Q 046220 733 GND-VS-PKRNYLGNFGYLTWF-EVNGKH 758 (774)
Q Consensus 733 ~~~-~~-~~~~~~~~~G~~~~~-~~~~~~ 758 (774)
... +. -.......||-|.++ ..+|+.
T Consensus 339 eveRL~~l~~D~dsrfgGLLff~d~~G~r 367 (381)
T PF04744_consen 339 EVERLSDLIYDPDSRFGGLLFFFDASGNR 367 (381)
T ss_dssp HHTTGGGGGGSSS-EEEEEEEEEETTS-E
T ss_pred HHhhhhhhhcCcccceeEEEEEEcCCCCE
Confidence 110 00 001234567777765 345643
No 98
>PRK13203 ureB urease subunit beta; Reviewed
Probab=31.40 E-value=96 Score=27.29 Aligned_cols=44 Identities=25% Similarity=0.305 Sum_probs=28.2
Q ss_pred ceEEEEEEEEecCCCceE----EEEE-----------------EECCCCcEEEEecceEEEecCCceEEEEEE
Q 046220 676 ASFTFKRVLTNVAVTRSV----YTAV-----------------VKAPAGMTVAVQPVTLSFDEKHSKAEFNLT 727 (774)
Q Consensus 676 ~~~~~~rtv~n~~~~~~t----y~~~-----------------~~~p~g~~v~v~p~~l~~~~~~~~~~~~vt 727 (774)
+..+++.+|+|.|+.+-. |.+- ..-|+|..| .| ++|+++++++.
T Consensus 18 gr~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTav-------RF-EPG~~k~V~LV 82 (102)
T PRK13203 18 GRETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAV-------RF-EPGQTREVELV 82 (102)
T ss_pred CCCEEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCcccccCCCCeE-------eE-CCCCeEEEEEE
Confidence 456788999999987632 3311 123566665 55 78888876654
No 99
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=31.35 E-value=1.4e+02 Score=21.97 Aligned_cols=43 Identities=19% Similarity=0.146 Sum_probs=24.5
Q ss_pred EEEEecCCCceEEEEEEECCCC-cEEEEecceEEEecCCceEEEEEEE
Q 046220 682 RVLTNVAVTRSVYTAVVKAPAG-MTVAVQPVTLSFDEKHSKAEFNLTV 728 (774)
Q Consensus 682 rtv~n~~~~~~ty~~~~~~p~g-~~v~v~p~~l~~~~~~~~~~~~vt~ 728 (774)
.+++|.|+.+..-. .++..=| ..+ +...-.+ ++||+..++|++
T Consensus 2 F~~~N~g~~~L~I~-~v~tsCgCt~~--~~~~~~i-~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVIT-DVQTSCGCTTA--EYSKKPI-APGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEE-EeeEccCCEEe--eCCcceE-CCCCEEEEEEEC
Confidence 57889998754432 2222212 333 3333345 789999888863
No 100
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=30.57 E-value=1.1e+02 Score=26.84 Aligned_cols=44 Identities=23% Similarity=0.282 Sum_probs=28.1
Q ss_pred ceEEEEEEEEecCCCceE----EEEE-----------------EECCCCcEEEEecceEEEecCCceEEEEEE
Q 046220 676 ASFTFKRVLTNVAVTRSV----YTAV-----------------VKAPAGMTVAVQPVTLSFDEKHSKAEFNLT 727 (774)
Q Consensus 676 ~~~~~~rtv~n~~~~~~t----y~~~-----------------~~~p~g~~v~v~p~~l~~~~~~~~~~~~vt 727 (774)
+..+++.+|+|.|+.+-. |.+- ..-|+|..| .| ++|+++++++.
T Consensus 18 gr~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTav-------RF-EPG~~k~V~LV 82 (101)
T cd00407 18 GREAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAV-------RF-EPGEEKEVELV 82 (101)
T ss_pred CCCEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecccCCCeE-------EE-CCCCeEEEEEE
Confidence 456788999999987532 3311 123566655 55 78888876654
No 101
>PRK13202 ureB urease subunit beta; Reviewed
Probab=30.25 E-value=1.1e+02 Score=27.05 Aligned_cols=42 Identities=17% Similarity=0.108 Sum_probs=27.2
Q ss_pred EEEEEEEEecCCCce----EEEEE-E----------------ECCCCcEEEEecceEEEecCCceEEEEEE
Q 046220 678 FTFKRVLTNVAVTRS----VYTAV-V----------------KAPAGMTVAVQPVTLSFDEKHSKAEFNLT 727 (774)
Q Consensus 678 ~~~~rtv~n~~~~~~----ty~~~-~----------------~~p~g~~v~v~p~~l~~~~~~~~~~~~vt 727 (774)
.+++.+|+|.|+.+- -|.+- + .-|+|..| .| ++|+++++++.
T Consensus 21 ~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTav-------RF-EPG~~k~V~LV 83 (104)
T PRK13202 21 SRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAV-------RF-EPGIPQIVGLV 83 (104)
T ss_pred ceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCcccccCCCCeE-------EE-CCCCeEEEEEE
Confidence 678899999999763 23321 1 13566655 55 78888877654
No 102
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=30.22 E-value=4.3e+02 Score=24.16 Aligned_cols=56 Identities=13% Similarity=0.021 Sum_probs=35.5
Q ss_pred ceEEEEEEEEecCCCceEEE----EEEECCCCc----EEEE---ecceEEEecCCceEEEEEEEEecc
Q 046220 676 ASFTFKRVLTNVAVTRSVYT----AVVKAPAGM----TVAV---QPVTLSFDEKHSKAEFNLTVNINL 732 (774)
Q Consensus 676 ~~~~~~rtv~n~~~~~~ty~----~~~~~p~g~----~v~v---~p~~l~~~~~~~~~~~~vt~~~~~ 732 (774)
+...+.+++||.|+.+-+-. +......|. ...- .+..+++ ++|++..+.|+.....
T Consensus 18 g~~~~~l~~tN~s~~~C~l~G~P~v~~~~~~g~~~~~~~~~~~~~~~~vtL-~PG~sA~a~l~~~~~~ 84 (131)
T PF14016_consen 18 GQRHATLTFTNTSDTPCTLYGYPGVALVDADGAPLGVPAVREGPPPRPVTL-APGGSAYAGLRWSNVG 84 (131)
T ss_pred CccEEEEEEEECCCCcEEeccCCcEEEECCCCCcCCccccccCCCCCcEEE-CCCCEEEEEEEEecCC
Confidence 45688899999998653311 222222222 1111 3456888 7999999999998865
No 103
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=29.72 E-value=5.5e+02 Score=25.26 Aligned_cols=55 Identities=13% Similarity=0.160 Sum_probs=36.4
Q ss_pred ceEEEEEEEEecCCCceEEEEEEEC----CCCcEEEEec---ceEEEecCCceEEEEEEEEecc
Q 046220 676 ASFTFKRVLTNVAVTRSVYTAVVKA----PAGMTVAVQP---VTLSFDEKHSKAEFNLTVNINL 732 (774)
Q Consensus 676 ~~~~~~rtv~n~~~~~~ty~~~~~~----p~g~~v~v~p---~~l~~~~~~~~~~~~vt~~~~~ 732 (774)
...+++.+|.|+|+. .-|.+++.. ++++++ |+- .++..-++|+..+.++++++..
T Consensus 38 ~~v~V~~~iyN~G~~-~A~dV~l~D~~fp~~~F~l-vsG~~s~~~~~i~pg~~vsh~~vv~p~~ 99 (181)
T PF05753_consen 38 EDVTVTYTIYNVGSS-AAYDVKLTDDSFPPEDFEL-VSGSLSASWERIPPGENVSHSYVVRPKK 99 (181)
T ss_pred cEEEEEEEEEECCCC-eEEEEEEECCCCCccccEe-ccCceEEEEEEECCCCeEEEEEEEeeee
Confidence 578999999999986 556677654 244443 221 1122227899888888888765
No 104
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=28.35 E-value=2.5e+02 Score=21.41 Aligned_cols=38 Identities=16% Similarity=0.209 Sum_probs=25.5
Q ss_pred ceEEEEEEEEecCCCceE-EEEEEECCCCcEEEEecceEEE
Q 046220 676 ASFTFKRVLTNVAVTRSV-YTAVVKAPAGMTVAVQPVTLSF 715 (774)
Q Consensus 676 ~~~~~~rtv~n~~~~~~t-y~~~~~~p~g~~v~v~p~~l~~ 715 (774)
...+++.+++|.|....+ ..++-..|+|+.. .|.++++
T Consensus 12 d~v~Yti~v~N~g~~~a~~v~v~D~lP~g~~~--v~~S~~~ 50 (53)
T TIGR01451 12 DTITYTITVTNNGNVPATNVVVTDILPSGTTF--VSNSVTV 50 (53)
T ss_pred CEEEEEEEEEECCCCceEeEEEEEcCCCCCEE--EeCcEEE
Confidence 578999999999986544 4455456777664 3444443
No 105
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=28.26 E-value=1.3e+02 Score=24.50 Aligned_cols=31 Identities=23% Similarity=0.337 Sum_probs=22.6
Q ss_pred ceEEEEEEEEecCCCceE-EEEEEECCCCcEE
Q 046220 676 ASFTFKRVLTNVAVTRSV-YTAVVKAPAGMTV 706 (774)
Q Consensus 676 ~~~~~~rtv~n~~~~~~t-y~~~~~~p~g~~v 706 (774)
...+++.+|+|.|+.... .++.-..|+|+.+
T Consensus 41 d~v~ytitvtN~G~~~a~nv~v~D~lp~g~~~ 72 (76)
T PF01345_consen 41 DTVTYTITVTNTGPAPATNVVVTDTLPAGLTF 72 (76)
T ss_pred CEEEEEEEEEECCCCeeEeEEEEEcCCCCCEE
Confidence 578999999999987633 4555556777765
No 106
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=27.27 E-value=1.3e+02 Score=26.50 Aligned_cols=44 Identities=20% Similarity=0.258 Sum_probs=28.0
Q ss_pred ceEEEEEEEEecCCCceE----EEEE-E----------------ECCCCcEEEEecceEEEecCCceEEEEEE
Q 046220 676 ASFTFKRVLTNVAVTRSV----YTAV-V----------------KAPAGMTVAVQPVTLSFDEKHSKAEFNLT 727 (774)
Q Consensus 676 ~~~~~~rtv~n~~~~~~t----y~~~-~----------------~~p~g~~v~v~p~~l~~~~~~~~~~~~vt 727 (774)
+..+.+.+|+|.|+.+-. |.+- + .-|+|..| .| ++|+++++++.
T Consensus 18 gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTav-------RF-EPG~~k~V~LV 82 (101)
T TIGR00192 18 GRKTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAV-------RF-EPGEEKSVELV 82 (101)
T ss_pred CCcEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCcccccCCCCeE-------eE-CCCCeEEEEEE
Confidence 356788999999987532 3311 1 23566655 55 78898877654
No 107
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=26.76 E-value=42 Score=22.98 Aligned_cols=13 Identities=38% Similarity=0.608 Sum_probs=10.5
Q ss_pred chhHHHHHHHHHH
Q 046220 549 MSCPHAAGIATLL 561 (774)
Q Consensus 549 mAaP~VAG~aALl 561 (774)
.|||.+||+++=+
T Consensus 14 LAAP~iagIi~s~ 26 (35)
T PF13940_consen 14 LAAPIIAGIIASL 26 (35)
T ss_pred hHhHHHHHHHHHH
Confidence 5899999998743
No 108
>PRK15019 CsdA-binding activator; Provisional
Probab=26.47 E-value=66 Score=30.55 Aligned_cols=31 Identities=16% Similarity=0.162 Sum_probs=26.6
Q ss_pred cccccchhHHHHHHHHHHHHhcCCCCHHHHHH
Q 046220 544 ESGTSMSCPHAAGIATLLKATHHEWSSAAIRS 575 (774)
Q Consensus 544 ~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~ 575 (774)
+.|.| =|+.|-|.+|||.+.+-+.+|++|.+
T Consensus 79 f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 79 FFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 34555 48999999999999999999999876
No 109
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=25.58 E-value=1.2e+02 Score=26.57 Aligned_cols=44 Identities=25% Similarity=0.277 Sum_probs=24.3
Q ss_pred ceEEEEEEEEecCCCceE----EEE-----------------EEECCCCcEEEEecceEEEecCCceEEEEEE
Q 046220 676 ASFTFKRVLTNVAVTRSV----YTA-----------------VVKAPAGMTVAVQPVTLSFDEKHSKAEFNLT 727 (774)
Q Consensus 676 ~~~~~~rtv~n~~~~~~t----y~~-----------------~~~~p~g~~v~v~p~~l~~~~~~~~~~~~vt 727 (774)
+..+++.+|+|.|+.+-. |.+ ...-|+|..| .| ++|+++++++.
T Consensus 17 gr~~~~l~V~N~GDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIPaGTav-------RF-EPG~~k~V~LV 81 (100)
T PF00699_consen 17 GRERITLEVTNTGDRPIQVGSHYHFFEVNPALEFDREAAYGMRLDIPAGTAV-------RF-EPGDTKEVELV 81 (100)
T ss_dssp TSEEEEEEEEE-SSS-EEEETTS-GGGS-TTEES-HHHHTTEEE-SSTT-EE-------EE--TT-EEEEEEE
T ss_pred CCcEEEEEEEeCCCcceEEccccCHHHHhHHhhhhHHHhCCcccCcCCCCeE-------EE-CCCCcEEEEEE
Confidence 467889999999997532 211 1234677665 45 67888876554
No 110
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=25.40 E-value=72 Score=29.96 Aligned_cols=33 Identities=12% Similarity=0.070 Sum_probs=27.5
Q ss_pred ecccccchhHHHHHHHHHHHHhcCCCCHHHHHHH
Q 046220 543 LESGTSMSCPHAAGIATLLKATHHEWSSAAIRSA 576 (774)
Q Consensus 543 ~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~ 576 (774)
.+.|.| =|+.|-|++|||.+.+-+.+|++|.+.
T Consensus 73 ~f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~~ 105 (138)
T TIGR03391 73 HFYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLAQ 105 (138)
T ss_pred EEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHHC
Confidence 344555 489999999999999999999998743
No 111
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism]
Probab=24.13 E-value=2.1e+02 Score=25.14 Aligned_cols=16 Identities=13% Similarity=-0.047 Sum_probs=12.4
Q ss_pred ceEEEEEEEEecCCCc
Q 046220 676 ASFTFKRVLTNVAVTR 691 (774)
Q Consensus 676 ~~~~~~rtv~n~~~~~ 691 (774)
+..+.+.+|.|+|+.+
T Consensus 18 gr~~~~i~V~NtGDRP 33 (106)
T COG0832 18 GRPTVTIEVANTGDRP 33 (106)
T ss_pred CCcceEEEEeecCCCc
Confidence 3566778899999876
No 112
>PRK13205 ureB urease subunit beta; Reviewed
Probab=22.82 E-value=1.6e+02 Score=27.80 Aligned_cols=45 Identities=18% Similarity=0.181 Sum_probs=29.0
Q ss_pred ceEEEEEEEEecCCCce----EEEEE-E----------------ECCCCcEEEEecceEEEecCCceEEEEEEE
Q 046220 676 ASFTFKRVLTNVAVTRS----VYTAV-V----------------KAPAGMTVAVQPVTLSFDEKHSKAEFNLTV 728 (774)
Q Consensus 676 ~~~~~~rtv~n~~~~~~----ty~~~-~----------------~~p~g~~v~v~p~~l~~~~~~~~~~~~vt~ 728 (774)
+..+++.+|+|.|+.+- -|.+- + .-|+|..| .| ++|+++++++.-
T Consensus 18 GR~~i~L~V~NtGDRPIQVGSHyHF~EvN~AL~FDR~~A~G~RLdIPAGTAV-------RF-EPGe~ktV~LV~ 83 (162)
T PRK13205 18 GREAKTIEIINTGDRPVQIGSHFHFAEVNPSISFDRSEGYGFRLDIPSGTAV-------RL-EPGDARTVNLVA 83 (162)
T ss_pred CCcEEEEEEEeCCCCceEeccccchhhcCccccccHHHhcCcccccCCCCeE-------eE-CCCCeEEEEEEE
Confidence 45678899999999763 23321 1 13566665 55 678888776653
No 113
>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]
Probab=22.53 E-value=82 Score=29.70 Aligned_cols=25 Identities=20% Similarity=0.197 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHhcCCCCHHHHHH
Q 046220 551 CPHAAGIATLLKATHHEWSSAAIRS 575 (774)
Q Consensus 551 aP~VAG~aALl~~~~P~~s~~~ik~ 575 (774)
|+.|.|.+|++++.+-..||++|..
T Consensus 80 A~ivrGL~aill~~~~G~t~~eI~~ 104 (144)
T COG2166 80 ARIVRGLLAILLAAYSGKTAAEILA 104 (144)
T ss_pred hHHHHHHHHHHHHHHcCCCHHHHHc
Confidence 7899999999999999999998863
No 114
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=22.35 E-value=75 Score=24.61 Aligned_cols=39 Identities=13% Similarity=0.146 Sum_probs=22.4
Q ss_pred cceecccccchhHHHHHHH------HHHHHhcCCCCHHHHHHHHH
Q 046220 540 EYALESGTSMSCPHAAGIA------TLLKATHHEWSSAAIRSAMM 578 (774)
Q Consensus 540 ~y~~~sGTSmAaP~VAG~a------ALl~~~~P~~s~~~ik~~L~ 578 (774)
+--.+.||=+..=.|.... .-+.+.||.+++++|+++|.
T Consensus 10 G~P~i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 10 GQPVIRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp G--EETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred CcceEcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 3445566666555554442 23566799999999999884
No 115
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=22.18 E-value=90 Score=29.32 Aligned_cols=32 Identities=13% Similarity=0.144 Sum_probs=27.0
Q ss_pred ecccccchhHHHHHHHHHHHHhcCCCCHHHHHH
Q 046220 543 LESGTSMSCPHAAGIATLLKATHHEWSSAAIRS 575 (774)
Q Consensus 543 ~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~ 575 (774)
.+.|.| =|+.|-|.+||+.+.+-..||++|.+
T Consensus 68 ~f~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 68 ELQGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEEEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 344555 58999999999999999999999875
No 116
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=22.06 E-value=1.2e+02 Score=21.79 Aligned_cols=25 Identities=12% Similarity=0.126 Sum_probs=21.2
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHccc
Q 046220 557 IATLLKATHHEWSSAAIRSAMMTTA 581 (774)
Q Consensus 557 ~aALl~~~~P~~s~~~ik~~L~~TA 581 (774)
.+..|++.+|+++...|+..|...-
T Consensus 5 ~v~~L~~mFP~l~~~~I~~~L~~~~ 29 (43)
T smart00546 5 ALHDLKDMFPNLDEEVIKAVLEANN 29 (43)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcC
Confidence 4567899999999999999998643
No 117
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=22.03 E-value=4e+02 Score=23.83 Aligned_cols=44 Identities=11% Similarity=0.149 Sum_probs=34.0
Q ss_pred eeec-CCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCCCcEEEECcCC
Q 046220 243 IGVA-PMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADGVDVMSLSLGF 291 (774)
Q Consensus 243 ~GvA-P~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~gvdVIn~SlG~ 291 (774)
.... ++++|+.+ +.+.| |....++.-+++..+.|+++|-+|--.
T Consensus 31 ~~y~~~~~elvgf--~~CgG---Cpg~~~~~~~~~l~~~~~d~IHlssC~ 75 (107)
T PF08821_consen 31 ARYDDEDVELVGF--FTCGG---CPGRKLVRRIKKLKKNGADVIHLSSCM 75 (107)
T ss_pred ccCCCCCeEEEEE--eeCCC---CChhHHHHHHHHHHHCCCCEEEEcCCE
Confidence 4444 46777765 45566 888999999999999999999998664
No 118
>PRK13201 ureB urease subunit beta; Reviewed
Probab=21.88 E-value=1.7e+02 Score=27.08 Aligned_cols=45 Identities=22% Similarity=0.186 Sum_probs=28.7
Q ss_pred ceEEEEEEEEecCCCceE----EEEE-E----------------ECCCCcEEEEecceEEEecCCceEEEEEEE
Q 046220 676 ASFTFKRVLTNVAVTRSV----YTAV-V----------------KAPAGMTVAVQPVTLSFDEKHSKAEFNLTV 728 (774)
Q Consensus 676 ~~~~~~rtv~n~~~~~~t----y~~~-~----------------~~p~g~~v~v~p~~l~~~~~~~~~~~~vt~ 728 (774)
+..+++.+|+|.|+.+-. |.+- + .-|+|..| .| ++|+++++++.-
T Consensus 18 gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAV-------RF-EPG~~k~V~LV~ 83 (136)
T PRK13201 18 HHPETVIEVENTGDRPIQVGSHFHFYEANAALDFEREMAYGKHLDIPAGAAV-------RF-EPGDKKEVQLVE 83 (136)
T ss_pred CCCEEEEEEEeCCCcceEeccccchhhcCccccccHhhhcCcccccCCCCeE-------eE-CCCCeEEEEEEE
Confidence 456788999999987632 3321 1 23566665 55 688888776653
No 119
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=21.23 E-value=2.6e+02 Score=31.49 Aligned_cols=74 Identities=20% Similarity=0.307 Sum_probs=55.6
Q ss_pred eecCCceEEEEEEEeeCCCCCCchHHHHHHHHHHHhCC-CcEEEECcCCCC----CCCCCcHHHHHHHHHHcCCcEEEEc
Q 046220 244 GVAPMARIAMYKIAFYNDTLKAAAVDVLAGMDQAIADG-VDVMSLSLGFPE----TTFDENPIAIGAFAALKKGIFVACS 318 (774)
Q Consensus 244 GvAP~A~l~~~kv~~~~g~~~~~~~di~~ai~~a~~~g-vdVIn~SlG~~~----~~~~~~~~~~a~~~a~~~Gi~vV~A 318 (774)
-=.|.++++.|-+.-... .....|++||+.|-+.+ +|||=.-=|+.+ ..+.++.+..+ ..+..+.||.|
T Consensus 158 rR~P~~~viv~pt~VQG~---~A~~eIv~aI~~an~~~~~DvlIVaRGGGSiEDLW~FNdE~vaRA---i~~s~iPvISA 231 (440)
T COG1570 158 RRFPSVEVIVYPTLVQGE---GAAEEIVEAIERANQRGDVDVLIVARGGGSIEDLWAFNDEIVARA---IAASRIPVISA 231 (440)
T ss_pred hhCCCCeEEEEeccccCC---CcHHHHHHHHHHhhccCCCCEEEEecCcchHHHHhccChHHHHHH---HHhCCCCeEee
Confidence 346889998888765544 67889999999999987 999999999865 23445555533 33567899999
Q ss_pred cCCCC
Q 046220 319 AGNSG 323 (774)
Q Consensus 319 AGN~G 323 (774)
-|-+-
T Consensus 232 VGHEt 236 (440)
T COG1570 232 VGHET 236 (440)
T ss_pred cccCC
Confidence 98865
No 120
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=20.43 E-value=3.8e+02 Score=27.61 Aligned_cols=53 Identities=8% Similarity=0.046 Sum_probs=37.6
Q ss_pred eEEEEEEEEecCCCceEEEEEEE---CC---C----------CcEEEEecceEEEecCCceEEEEEEEEe
Q 046220 677 SFTFKRVLTNVAVTRSVYTAVVK---AP---A----------GMTVAVQPVTLSFDEKHSKAEFNLTVNI 730 (774)
Q Consensus 677 ~~~~~rtv~n~~~~~~ty~~~~~---~p---~----------g~~v~v~p~~l~~~~~~~~~~~~vt~~~ 730 (774)
.....++|.|.|+.+..+.+++. .| . .-.+-++|..|.+ ++|+++.|.|.-..
T Consensus 32 ~~~~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L-~pg~~q~IRli~lg 100 (234)
T PRK15308 32 EEATSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFAL-PAGTTRTVRVISLQ 100 (234)
T ss_pred cceEEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEE-CCCCeEEEEEEEcC
Confidence 44567889999998877777653 22 1 1257789999999 78888887766544
No 121
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=20.27 E-value=4.4e+02 Score=28.17 Aligned_cols=25 Identities=12% Similarity=0.190 Sum_probs=15.7
Q ss_pred cEEEEEEEEe---eCCeeEEEEEEEEEE
Q 046220 744 GNFGYLTWFE---VNGKHQVRSPIVSAF 768 (774)
Q Consensus 744 ~~~G~~~~~~---~~~~~~v~~P~~~~~ 768 (774)
-..|.+.|.- ..++..++.-+.|.+
T Consensus 288 ~~~g~~~W~~~l~~g~~~~l~~~y~v~~ 315 (317)
T PF13598_consen 288 EKDGILEWKVTLPPGESRTLEFSYEVEY 315 (317)
T ss_pred CCCCEEEEEEEECCCCEEEEEEEEEEEc
Confidence 4556777742 356777777776654
No 122
>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins. This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.
Probab=20.03 E-value=1.1e+02 Score=28.24 Aligned_cols=33 Identities=15% Similarity=0.041 Sum_probs=26.3
Q ss_pred ecccccchhHHHHHHHHHHHHhcCCCCHHHHHHH
Q 046220 543 LESGTSMSCPHAAGIATLLKATHHEWSSAAIRSA 576 (774)
Q Consensus 543 ~~sGTSmAaP~VAG~aALl~~~~P~~s~~~ik~~ 576 (774)
.+.|.|= |+.|-|++||+.+.+-+.+|++|.+.
T Consensus 59 ~f~adSd-a~ivkGl~all~~~~~g~t~~eI~~~ 91 (125)
T PF02657_consen 59 HFRADSD-ARIVKGLLALLLEVLNGQTPEEILAF 91 (125)
T ss_dssp EEEEEES-SHHHHHHHHHHHHHTTT-BHHHHHHS
T ss_pred EEEecCc-cHHHHHHHHHHHHHHcCCCHHHHHhC
Confidence 4455555 67999999999999999999998753
Done!