BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046221
         (572 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|359474850|ref|XP_002277741.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
 gi|297744624|emb|CBI37886.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  728 bits (1879), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/624 (58%), Positives = 452/624 (72%), Gaps = 55/624 (8%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           DP N SKLLS Y KSG I  A  LF+EIP+++VVSWSI+IHGY+ NGF  KSM+ FS M 
Sbjct: 25  DPINYSKLLSCYLKSGDIINAGKLFEEIPKRDVVSWSIMIHGYNRNGFRRKSMELFSQMR 84

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
           +S L+P SFTMVGVLV+ AGL +  L + +HGL++K+GL+SD                  
Sbjct: 85  ISSLVPTSFTMVGVLVSIAGLGDPVLGQCVHGLILKYGLDSDFRVVTALLNAYAKCGNVV 144

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +FE L+NP LVSC+AIV+GF+ N+LF++AV+LFN FR  G+VPNA T+LT+IR CV
Sbjct: 145 DSYRVFEQLENPGLVSCSAIVSGFVYNELFEEAVVLFNQFRKLGMVPNAATVLTLIRACV 204

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
           AL SR LCE IHG+ +KL L+LDV+VNNSVLDMYS ++DLDAA ++F  MEC+DVISWT 
Sbjct: 205 ALESRRLCESIHGMVVKLSLVLDVAVNNSVLDMYSSMLDLDAATRVFEGMECRDVISWTT 264

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+ L V  EYA DAL +FR+MR + I  D V ++NLIS  AILGDLKRG+++H Q ++ G
Sbjct: 265 MINLLVCLEYASDALMLFRQMRNTGICNDVVVVMNLISACAILGDLKRGREIHTQAIVCG 324

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
             SEL L+NSIIAMYSKCGDLDSSR+VF+Q T KSLVSWTA+I G VQNG  REAL   I
Sbjct: 325 FGSELPLTNSIIAMYSKCGDLDSSRTVFDQTTGKSLVSWTAMILGCVQNGYPREALKLLI 384

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           KMR E++  +DSI L+ +L+ASGELA LE+C QLH  AFE+GFPRYR VQN LIS+YSKC
Sbjct: 385 KMRGEESFYLDSIMLIGVLSASGELALLELCQQLHCYAFESGFPRYRLVQNSLISAYSKC 444

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G+V+ AY VF +MG++RD+VSWN I+ GYG+NGHGE A+ALYH+M +  E PD++TYL +
Sbjct: 445 GDVEPAYNVFGQMGYIRDIVSWNAILNGYGINGHGEIAVALYHEMRKGRENPDAATYLCV 504

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L+AC H+GL +DGLVIFNQM+EE  ++PSQ+H GC+VDLLARAGC SDA     + +E M
Sbjct: 505 LSACSHSGLVDDGLVIFNQMVEERTIRPSQDHCGCIVDLLARAGCFSDAREFVSRYMEKM 564

Query: 522 GPNIWRALLSGCVLH---------------------------------VGRFQDAEALRS 548
           GPN WRALLSGC LH                                 VGRFQDAEALR+
Sbjct: 565 GPNAWRALLSGCQLHGNVGLAELAARRVCELDPEEPGQVVLLSNVYASVGRFQDAEALRA 624

Query: 549 GSQKKGIIKIPGISFLNSTSRDFG 572
             +KK +IK PGIS LN    D G
Sbjct: 625 SMKKKELIKNPGISLLNRIPYDVG 648



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 75/353 (21%), Positives = 153/353 (43%), Gaps = 32/353 (9%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D   ++ +L  Y     +  A  +F+ +  ++V+SW+ +I+      +   ++  F  M
Sbjct: 226 LDVAVNNSVLDMYSSMLDLDAATRVFEGMECRDVISWTTMINLLVCLEYASDALMLFRQM 285

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------- 106
             +G+  +   ++ ++ A A L +L+  R IH   +  G  S+L                
Sbjct: 286 RNTGICNDVVVVMNLISACAILGDLKRGREIHTQAIVCGFGSELPLTNSIIAMYSKCGDL 345

Query: 107 ------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRG-SGLVPNAVTMLTVIRG 159
                 F+      LVS  A++ G + N   ++A+ L    RG      +++ ++ V+  
Sbjct: 346 DSSRTVFDQTTGKSLVSWTAMILGCVQNGYPREALKLLIKMRGEESFYLDSIMLIGVLSA 405

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM-ECKDVIS 218
              L    LC+ +H    + G      V NS++  YS   D++ A  +F +M   +D++S
Sbjct: 406 SGELALLELCQQLHCYAFESGFPRYRLVQNSLISAYSKCGDVEPAYNVFGQMGYIRDIVS 465

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           W  ++  +    +   A+ ++ EMRK R   D    L ++S  +  G +  G  +  Q+V
Sbjct: 466 WNAILNGYGINGHGEIAVALYHEMRKGRENPDAATYLCVLSACSHSGLVDDGLVIFNQMV 525

Query: 279 LGGLQSELRLSNS----IIAMYSKCGDLDSSRSVFNQITEK-SLVSWTAIISG 326
               +  +R S      I+ + ++ G    +R   ++  EK    +W A++SG
Sbjct: 526 ---EERTIRPSQDHCGCIVDLLARAGCFSDAREFVSRYMEKMGPNAWRALLSG 575


>gi|255587382|ref|XP_002534254.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223525641|gb|EEF28132.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 561

 Score =  556 bits (1434), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 305/563 (54%), Positives = 380/563 (67%), Gaps = 60/563 (10%)

Query: 65  SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------- 105
           SGL PNSF++VG L++A GL +L LA SIHGL++K GL SD                   
Sbjct: 4   SGLAPNSFSVVGALLSAIGLCDLMLASSIHGLILKRGLVSDFIVGTAMLDAYAKCGNALE 63

Query: 106 ---LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA 162
              +F+ L N  L++CNA +AG I N L  +  +LF  FR  GLVPN  T+LT+I+GCVA
Sbjct: 64  SYKVFKELNNAGLITCNATLAGLIANGLCIEGFMLFKEFRKFGLVPNVATVLTLIKGCVA 123

Query: 163 LGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
           L  + LCE ++GL  K GL  DV+VNNSV++MYS   DL+AA ++F EM+ KDVISWT M
Sbjct: 124 LEIKMLCESVYGLIFKFGLSSDVNVNNSVVNMYSRFQDLNAAAKVFDEMKFKDVISWTTM 183

Query: 223 MGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL 282
           M + +D E A DAL +  +M+ S +  D+V L++LIS  AILGDL +G+Q HAQ V+ G 
Sbjct: 184 MAVLIDLECASDALVLLSKMKDSMLDLDSVVLMHLISACAILGDLGKGRQCHAQAVIRGF 243

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
           +SEL L NSIIAMYSKCGDL  SR VF+Q TEKSLVSWTA++SG VQNGC+REAL+  IK
Sbjct: 244 KSELPLVNSIIAMYSKCGDLRFSRIVFDQTTEKSLVSWTAMVSGCVQNGCSREALDLAIK 303

Query: 343 MRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
            R E+  S DS+ LV+ LTAS EL   E C QLH    E GF +YR VQN LIS+YSKCG
Sbjct: 304 ARLEENYSFDSVMLVNALTASSELVDKEFCQQLHCYILETGFSQYRLVQNSLISAYSKCG 363

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
           N+DLA+IVF+EM  L++VVSWN II GYG+NGHGE ALALYH+M + GE PDS+TY  IL
Sbjct: 364 NIDLAHIVFKEMDSLQNVVSWNAIINGYGINGHGEVALALYHEMRKGGEDPDSATYSCIL 423

Query: 463 NACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMG 522
           +AC HAGL  DGL+IFN+M+++NK++P Q+HYGCV+DLL RAGCLSD +    K LE   
Sbjct: 424 SACSHAGLIRDGLMIFNRMVKDNKIRPRQQHYGCVIDLLMRAGCLSDTNDW--KFLEDTC 481

Query: 523 PNIWRALLSGCVLH---------------------------------VGRFQDAEALRSG 549
           PN+W+ALLSGC LH                                 VGRFQDAE+LR  
Sbjct: 482 PNVWKALLSGCALHGNVELAELAAKYLLEKNPGESVVLVLLSNVYVSVGRFQDAESLR-- 539

Query: 550 SQKKGIIKIPGISFLNSTSRDFG 572
              KG +K PGIS+L  TS D G
Sbjct: 540 -LTKGFVKNPGISYLCGTSYDCG 561



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 114/458 (24%), Positives = 208/458 (45%), Gaps = 32/458 (6%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + +L  Y K G   E+  +F E+    +++ +  + G   NG   +    F      GL+
Sbjct: 49  TAMLDAYAKCGNALESYKVFKELNNAGLITCNATLAGLIANGLCIEGFMLFKEFRKFGLV 108

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL----------------------ESDL 106
           PN  T++ ++     L+   L  S++GL+ KFGL                       + +
Sbjct: 109 PNVATVLTLIKGCVALEIKMLCESVYGLIFKFGLSSDVNVNNSVVNMYSRFQDLNAAAKV 168

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           F+ +K   ++S   ++A  I+ +    A++L +  + S L  ++V ++ +I  C  LG  
Sbjct: 169 FDEMKFKDVISWTTMMAVLIDLECASDALVLLSKMKDSMLDLDSVVLMHLISACAILGDL 228

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
                 H   +  G   ++ + NS++ MYS   DL  +  +F +   K ++SWT M+   
Sbjct: 229 GKGRQCHAQAVIRGFKSELPLVNSIIAMYSKCGDLRFSRIVFDQTTEKSLVSWTAMVSGC 288

Query: 227 VDFEYAGDALKIFREMR-KSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           V    + +AL +  + R +     D+V L+N ++ ++ L D +  +QLH  ++  G    
Sbjct: 289 VQNGCSREALDLAIKARLEENYSFDSVMLVNALTASSELVDKEFCQQLHCYILETGFSQY 348

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITE-KSLVSWTAIISGYVQNGCAREALNQFIKMR 344
             + NS+I+ YSKCG++D +  VF ++   +++VSW AII+GY  NG    AL  + +MR
Sbjct: 349 RLVQNSLISAYSKCGNIDLAHIVFKEMDSLQNVVSWNAIINGYGINGHGEVALALYHEMR 408

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ-NCLISSYSKCGN 403
           +   D  DS T   IL+A      +   L +     +    R R     C+I    + G 
Sbjct: 409 KGGEDP-DSATYSCILSACSHAGLIRDGLMIFNRMVKDNKIRPRQQHYGCVIDLLMRAGC 467

Query: 404 VDLAYIVFEEMGFLRDVVS--WNTIIYGYGVNGHGETA 439
           +        +  FL D     W  ++ G  ++G+ E A
Sbjct: 468 LSDT----NDWKFLEDTCPNVWKALLSGCALHGNVELA 501


>gi|115441783|ref|NP_001045171.1| Os01g0913400 [Oryza sativa Japonica Group]
 gi|56784407|dbj|BAD82446.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113534702|dbj|BAF07085.1| Os01g0913400 [Oryza sativa Japonica Group]
          Length = 712

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 224/535 (41%), Positives = 336/535 (62%), Gaps = 24/535 (4%)

Query: 25  ENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGL 84
             +FDE+P +++V+ S  I+ ++ +G   ++++ F  MM  G+ PNSFT+VG L+AAAG+
Sbjct: 110 RQMFDEMPVRDLVACSAAIYRHAKSGLFGEAVRLFVGMMRVGVSPNSFTLVGALIAAAGM 169

Query: 85  QNLELARSIHGLMVKFGLESD----------------------LFEGLKNPYLVSCNAIV 122
            NL LA  IHG  +K  LES+                      LF  +++P +V+ NA++
Sbjct: 170 GNLVLAECIHGWAMKSLLESNPFVRTALLDSYAKCGRPTKAWALFGEMRDPGIVTWNALI 229

Query: 123 AGFINNKLFQQAVLLFNFFRGS-GLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGL 181
           +G ++N LF++A+L+F     S G V N VTM+++ +     G   LCE  H  ++K+GL
Sbjct: 230 SGLVHNDLFEEALLVFKRLLFSFGPVHNVVTMISIAQASAGCGDLGLCESAHAYSVKIGL 289

Query: 182 ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFRE 241
             DVSV NS+L MY     L    +IF+++   DV+SWT MMG  ++   A + + +F +
Sbjct: 290 DSDVSVTNSILGMYLSFGSLAIGREIFKKIAVNDVVSWTMMMGFLLEEAQAIEVIHMFVQ 349

Query: 242 MRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGD 301
           MR S I+ D VAL+ +    A LGD + GK +H ++V+ G   EL   NS+I MYSKC D
Sbjct: 350 MRLSGIVPDRVALVTVAQACAHLGDGRIGKLVHNEIVICGFSGELPAVNSLITMYSKCED 409

Query: 302 LDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILT 361
           L S+R +F+   EKSLVSWTA++S Y++NG A E +  F KMR E +  +DS+TLV++L 
Sbjct: 410 LSSARLLFDGTMEKSLVSWTAMVSAYIENGYALEGMYLFAKMRHEGSFMIDSVTLVTLLL 469

Query: 362 ASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVV 421
           A  E+A  E+C+QLH   +++G   Y+ V N LI+ Y KCG   LA+ VF+EM   R+ V
Sbjct: 470 ACYEVAKFELCIQLHAYCYKSGLCLYKPVLNTLIAVYGKCGYATLAHKVFDEM-ISRNAV 528

Query: 422 SWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQM 481
           SWNT+I  YGVNG GE A++L+++M ++ E  DS TYL+ L AC H+GL +DG+++F +M
Sbjct: 529 SWNTMILSYGVNGQGEKAVSLFNEMEKSSEDQDSVTYLNTLLACSHSGLVDDGMLVFRRM 588

Query: 482 IEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
           + +  + P  EH GC+VD+LARAG L +A+G+A      +G N W+AL+ G  LH
Sbjct: 589 VNDKGIIPCPEHVGCIVDMLARAGRLEEAAGVASLTHNKLGANAWKALMGGGHLH 643



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 107/383 (27%), Positives = 191/383 (49%), Gaps = 25/383 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           +P+  + LL +Y K G+  +A  LF E+ +  +V+W+ +I G   N   E+++  F  ++
Sbjct: 190 NPFVRTALLDSYAKCGRPTKAWALFGEMRDPGIVTWNALISGLVHNDLFEEALLVFKRLL 249

Query: 64  LS-GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
            S G + N  TM+ +  A+AG  +L L  S H   VK GL+SD                 
Sbjct: 250 FSFGPVHNVVTMISIAQASAGCGDLGLCESAHAYSVKIGLDSDVSVTNSILGMYLSFGSL 309

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +F+ +    +VS   ++   +      + + +F   R SG+VP+ V ++TV + C
Sbjct: 310 AIGREIFKKIAVNDVVSWTMMMGFLLEEAQAIEVIHMFVQMRLSGIVPDRVALVTVAQAC 369

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             LG   + +L+H   +  G   ++   NS++ MYS   DL +A  +F     K ++SWT
Sbjct: 370 AHLGDGRIGKLVHNEIVICGFSGELPAVNSLITMYSKCEDLSSARLLFDGTMEKSLVSWT 429

Query: 221 RMMGLFVDFEYAGDALKIFREMR-KSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
            M+  +++  YA + + +F +MR +   + D+V L+ L+     +   +   QLHA    
Sbjct: 430 AMVSAYIENGYALEGMYLFAKMRHEGSFMIDSVTLVTLLLACYEVAKFELCIQLHAYCYK 489

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            GL     + N++IA+Y KCG    +  VF+++  ++ VSW  +I  Y  NG   +A++ 
Sbjct: 490 SGLCLYKPVLNTLIAVYGKCGYATLAHKVFDEMISRNAVSWNTMILSYGVNGQGEKAVSL 549

Query: 340 FIKMRQEKTDSVDSITLVSILTA 362
           F +M +   D  DS+T ++ L A
Sbjct: 550 FNEMEKSSEDQ-DSVTYLNTLLA 571


>gi|125573080|gb|EAZ14595.1| hypothetical protein OsJ_04518 [Oryza sativa Japonica Group]
          Length = 597

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/529 (41%), Positives = 332/529 (62%), Gaps = 24/529 (4%)

Query: 31  IPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELA 90
           +P +++V+ S  I+ ++ +G   ++++ F  MM  G+ PNSFT+VG L+AAAG+ NL LA
Sbjct: 1   MPVRDLVACSAAIYRHAKSGLFGEAVRLFVGMMRVGVSPNSFTLVGALIAAAGMGNLVLA 60

Query: 91  RSIHGLMVKFGLESD----------------------LFEGLKNPYLVSCNAIVAGFINN 128
             IHG  +K  LES+                      LF  +++P +V+ NA+++G ++N
Sbjct: 61  ECIHGWAMKSLLESNPFVRTALLDSYAKCGRPTKAWALFGEMRDPGIVTWNALISGLVHN 120

Query: 129 KLFQQAVLLFNFFRGS-GLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSV 187
            LF++A+L+F     S G V N VTM+++ +     G   LCE  H  ++K+GL  DVSV
Sbjct: 121 DLFEEALLVFKRLLFSFGPVHNVVTMISIAQASAGCGDLGLCESAHAYSVKIGLDSDVSV 180

Query: 188 NNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRI 247
            NS+L MY     L    +IF+++   DV+SWT MMG  ++   A + + +F +MR S I
Sbjct: 181 TNSILGMYLSFGSLAIGREIFKKIAVNDVVSWTMMMGFLLEEAQAIEVIHMFVQMRLSGI 240

Query: 248 ICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRS 307
           + D VAL+ +    A LGD + GK +H ++V+ G   EL   NS+I MYSKC DL S+R 
Sbjct: 241 VPDRVALVTVAQACAHLGDGRIGKLVHNEIVICGFSGELPAVNSLITMYSKCEDLSSARL 300

Query: 308 VFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELA 367
           +F+   EKSLVSWTA++S Y++NG A E +  F KMR E +  +DS+TLV++L A  E+A
Sbjct: 301 LFDGTMEKSLVSWTAMVSAYIENGYALEGMYLFAKMRHEGSFMIDSVTLVTLLLACYEVA 360

Query: 368 ALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
             E+C+QLH   +++G   Y+ V N LI+ Y KCG   LA+ VF+EM   R+ VSWNT+I
Sbjct: 361 KFELCIQLHAYCYKSGLCLYKPVLNTLIAVYGKCGYATLAHKVFDEM-ISRNAVSWNTMI 419

Query: 428 YGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKV 487
             YGVNG GE A++L+++M ++ E  DS TYL+ L AC H+GL +DG+++F +M+ +  +
Sbjct: 420 LSYGVNGQGEKAVSLFNEMEKSSEDQDSVTYLNTLLACSHSGLVDDGMLVFRRMVNDKGI 479

Query: 488 KPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
            P  EH GC+VD+LARAG L +A+G+A      +G N W+AL+ G  LH
Sbjct: 480 IPCPEHVGCIVDMLARAGRLEEAAGVASLTHNKLGANAWKALMGGGHLH 528



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 107/383 (27%), Positives = 191/383 (49%), Gaps = 25/383 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           +P+  + LL +Y K G+  +A  LF E+ +  +V+W+ +I G   N   E+++  F  ++
Sbjct: 75  NPFVRTALLDSYAKCGRPTKAWALFGEMRDPGIVTWNALISGLVHNDLFEEALLVFKRLL 134

Query: 64  LS-GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
            S G + N  TM+ +  A+AG  +L L  S H   VK GL+SD                 
Sbjct: 135 FSFGPVHNVVTMISIAQASAGCGDLGLCESAHAYSVKIGLDSDVSVTNSILGMYLSFGSL 194

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +F+ +    +VS   ++   +      + + +F   R SG+VP+ V ++TV + C
Sbjct: 195 AIGREIFKKIAVNDVVSWTMMMGFLLEEAQAIEVIHMFVQMRLSGIVPDRVALVTVAQAC 254

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             LG   + +L+H   +  G   ++   NS++ MYS   DL +A  +F     K ++SWT
Sbjct: 255 AHLGDGRIGKLVHNEIVICGFSGELPAVNSLITMYSKCEDLSSARLLFDGTMEKSLVSWT 314

Query: 221 RMMGLFVDFEYAGDALKIFREMR-KSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
            M+  +++  YA + + +F +MR +   + D+V L+ L+     +   +   QLHA    
Sbjct: 315 AMVSAYIENGYALEGMYLFAKMRHEGSFMIDSVTLVTLLLACYEVAKFELCIQLHAYCYK 374

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            GL     + N++IA+Y KCG    +  VF+++  ++ VSW  +I  Y  NG   +A++ 
Sbjct: 375 SGLCLYKPVLNTLIAVYGKCGYATLAHKVFDEMISRNAVSWNTMILSYGVNGQGEKAVSL 434

Query: 340 FIKMRQEKTDSVDSITLVSILTA 362
           F +M +   D  DS+T ++ L A
Sbjct: 435 FNEMEKSSEDQ-DSVTYLNTLLA 456


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 187/550 (34%), Positives = 308/550 (56%), Gaps = 26/550 (4%)

Query: 10  KLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLP 69
           KL+  Y K G +KE   +FD++ E  +  W+++I  YS +G + +S+  F  M+  G+ P
Sbjct: 190 KLVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKP 249

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES----------------------DLF 107
           NS+T   +L   A +  +E  R +HGL+ K G  S                       LF
Sbjct: 250 NSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLF 309

Query: 108 EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRA 167
           + L +  ++S N++++G++ N L  + + +F      G+  +  TM+ V   C  +G+  
Sbjct: 310 DELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLL 369

Query: 168 LCELIHGLTIKLG-LILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
           L +++H  +IK   L  +V  NN++LDMYS   DL++AI++F  M+ K V+SWT M+  +
Sbjct: 370 LGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGY 429

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
           V    +  A+K+F EM+   ++ D  A+ ++++  AI G+LK GK +H  +    L++  
Sbjct: 430 VREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNS 489

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            +SN++  MY+KCG +  +  VF+ + +K ++SW  +I GY +N    EAL  F +M++E
Sbjct: 490 FVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQRE 549

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
                D  T+  IL A   LAAL+   ++HG A   G+   + V N ++  Y KCG + L
Sbjct: 550 SKP--DGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLLVL 607

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           A  +F +M   +D+VSW  +I GYG++G+G  A+  +++M  TG  PD  +++SIL AC 
Sbjct: 608 ARSLF-DMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACS 666

Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIW 526
           H+GL ++G  IFN M +E +++P+ EHY C+VDLLAR G L  A      +       IW
Sbjct: 667 HSGLLDEGWKIFNIMKKECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAMPIKPDATIW 726

Query: 527 RALLSGCVLH 536
            ALL GC +H
Sbjct: 727 GALLCGCRIH 736



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 168/332 (50%), Gaps = 4/332 (1%)

Query: 180 GLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIF 239
           G+++D  +   ++ MY    DL     +F ++    +  W  M+  +      G+++ +F
Sbjct: 180 GVMIDGILGVKLVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLF 239

Query: 240 REMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKC 299
           ++M +  I  ++    +++   A +  ++ G+Q+H  +   G  S   + NS+I+ Y   
Sbjct: 240 KQMLELGIKPNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVG 299

Query: 300 GDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSI 359
             +  ++ +F+++T++ ++SW ++ISGYV+NG     +  FIKM     D +D  T+V++
Sbjct: 300 RKVRCAQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVD-IDLATMVNV 358

Query: 360 LTASGELAALEICLQLHGIAFEAG-FPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLR 418
             A   +  L +   LH  + +A    R     N L+  YSKCG+++ A  VFE M   +
Sbjct: 359 FVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMD-EK 417

Query: 419 DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIF 478
            VVSW ++I GY   G  + A+ L+ +M   G VPD     SILNAC   G    G ++ 
Sbjct: 418 TVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIV- 476

Query: 479 NQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
           +  I EN ++ +      + D+ A+ G + DA
Sbjct: 477 HDYIRENNLETNSFVSNALTDMYAKCGSMKDA 508



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 145/285 (50%), Gaps = 3/285 (1%)

Query: 250 DTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVF 309
           D  A  +++ + A    ++ G+++ + +   G+  +  L   ++ MY KCGDL   R VF
Sbjct: 149 DLGAYCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVF 208

Query: 310 NQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAAL 369
           ++++E  +  W  +IS Y  +G   E++N F +M  E     +S T  SIL     +A +
Sbjct: 209 DKLSESKIFLWNLMISEYSGSGNYGESINLFKQM-LELGIKPNSYTFSSILKCFAAVARV 267

Query: 370 EICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYG 429
           E   Q+HG+  + GF  Y +V N LIS Y     V  A  +F+E+   RDV+SWN++I G
Sbjct: 268 EEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTD-RDVISWNSMISG 326

Query: 430 YGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKP 489
           Y  NG  +  + ++ KM   G   D +T +++  AC + G    G V+ +  I+   +  
Sbjct: 327 YVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDR 386

Query: 490 SQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCV 534
                  ++D+ ++ G L+ A  +  ++ E    + W ++++G V
Sbjct: 387 EVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVS-WTSMITGYV 430


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  332 bits (850), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 190/610 (31%), Positives = 320/610 (52%), Gaps = 57/610 (9%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           +L+ Y K G I+EA  +FD++ +K+VVSW+I I GY+  G  E + + F  M   G++PN
Sbjct: 167 ILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPN 226

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFE 108
             T + VL A +    L+  +++H  ++  G ESD                      +FE
Sbjct: 227 RITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFE 286

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            L N  L++ N ++ G      +++A  ++N  +  G++PN +T + ++  CV   +   
Sbjct: 287 KLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHW 346

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
            + IH    K G   D+ V N+++ MYS    +  A  +F +M  KDVISWT M+G    
Sbjct: 347 GKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAK 406

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
             +  +AL +++EM+++ +  + V   ++++  +    L+ G+++H QVV  GL ++  +
Sbjct: 407 SGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHV 466

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
            N+++ MYS CG +  +R VF+++ ++ +V++ A+I GY  +   +EAL  F ++ QE+ 
Sbjct: 467 GNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRL-QEEG 525

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
              D +T +++L A     +LE   ++H +  + GF    SV N L+S+Y+KCG+   A 
Sbjct: 526 LKPDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDAS 585

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
           IVFE+M   R+V+SWN II G   +G G+ AL L+ +M   G  PD  T++S+L+AC HA
Sbjct: 586 IVFEKMT-KRNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHA 644

Query: 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRA 528
           GL  +G   F  M ++  + P+ EHYGC+VDLL RAG L +A  L   +       IW A
Sbjct: 645 GLLEEGRRYFCSMSQDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIKTMPFQANTRIWGA 704

Query: 529 LLSGCVLH---------------------------------VGRFQDAEALRSGSQKKGI 555
           LL  C +H                                  G +  A  LR   +++G+
Sbjct: 705 LLGACRIHGNVPVAERAAESSLKLDLDNAVVYVALSHMYAAAGMWDSAAKLRKLMEQRGV 764

Query: 556 IKIPGISFLN 565
            K PG S++ 
Sbjct: 765 TKEPGRSWIQ 774



 Score =  244 bits (623), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 158/578 (27%), Positives = 290/578 (50%), Gaps = 33/578 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIP--EKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           D Y  + L++ Y + G I+EA  ++ ++   E+ V SW+ ++ GY   G+ EK++K    
Sbjct: 57  DQYTVNALINMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQ 116

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL------------------- 102
           M   GL P+  T++  L +      LE  R IH   ++ GL                   
Sbjct: 117 MQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGS 176

Query: 103 ---ESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                ++F+ ++   +VS    + G+ +    + A  +F      G+VPN +T ++V+  
Sbjct: 177 IEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNA 236

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
             +  +    + +H   +  G   D +V  +++ MY+         Q+F ++  +D+I+W
Sbjct: 237 FSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAW 296

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
             M+G   +  Y  +A +++ +M++  ++ + +  + L++       L  GK++H++V  
Sbjct: 297 NTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAK 356

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G  S++ + N++I+MYS+CG +  +R VF+++  K ++SWTA+I G  ++G   EAL  
Sbjct: 357 AGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTV 416

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           + +M+Q   +  + +T  SIL A    AALE   ++H    EAG      V N L++ YS
Sbjct: 417 YQEMQQAGVEP-NRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYS 475

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
            CG+V  A  VF+ M   RD+V++N +I GY  +  G+ AL L+ ++ E G  PD  TY+
Sbjct: 476 MCGSVKDARQVFDRM-IQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYI 534

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519
           ++LNAC ++G       I + ++ +            +V   A+ G  SDAS +  K+ +
Sbjct: 535 NMLNACANSGSLEWAREI-HTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTK 593

Query: 520 GMGPNI--WRALLSGCVLHVGRFQDAEALRSGSQKKGI 555
               N+  W A++ G   H GR QDA  L    + +G+
Sbjct: 594 ---RNVISWNAIIGGSAQH-GRGQDALQLFERMKMEGV 627



 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 98/334 (29%), Positives = 180/334 (53%), Gaps = 4/334 (1%)

Query: 134 AVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLD 193
           AV +  + +  G   N+   + +++ C+ +        +H   I+   + D    N++++
Sbjct: 7   AVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALIN 66

Query: 194 MYSCLMDLDAAIQIFREMEC--KDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDT 251
           MY     ++ A Q+++++    + V SW  M+  ++ + Y   ALK+ R+M++  +  D 
Sbjct: 67  MYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDR 126

Query: 252 VALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQ 311
             +++ +S     G L+ G+++H Q +  GL  +++++N I+ MY+KCG ++ +R VF++
Sbjct: 127 TTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDK 186

Query: 312 ITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEI 371
           + +KS+VSWT  I GY   G +  A   F KM QE     + IT +S+L A    AAL+ 
Sbjct: 187 MEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGV-VPNRITYISVLNAFSSPAALKW 245

Query: 372 CLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYG 431
              +H     AG     +V   L+  Y+KCG+      VFE++   RD+++WNT+I G  
Sbjct: 246 GKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKL-VNRDLIAWNTMIGGLA 304

Query: 432 VNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
             G+ E A  +Y++M   G +P+  TY+ +LNAC
Sbjct: 305 EGGYWEEASEVYNQMQREGVMPNKITYVILLNAC 338



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 104/225 (46%), Gaps = 38/225 (16%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L++ Y   G +K+A  +FD + ++++V+++ +I GY+ +   ++++K F  + 
Sbjct: 463 DAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQ 522

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
             GL P+  T + +L A A   +LE AR IH L+ K G  SD                  
Sbjct: 523 EEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFS 582

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC- 160
               +FE +    ++S NAI+ G   +   Q A+ LF   +  G+ P+ VT ++++  C 
Sbjct: 583 DASIVFEKMTKRNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACS 642

Query: 161 ----VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDL 201
               +  G R  C +     I              ++ Y C++DL
Sbjct: 643 HAGLLEEGRRYFCSMSQDFAII-----------PTIEHYGCMVDL 676


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 184/609 (30%), Positives = 319/609 (52%), Gaps = 57/609 (9%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           +L+ Y K G I EA  +FD++  K+VVSW+I+I GY+  G  E + + F  M   G++PN
Sbjct: 285 ILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPN 344

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------------FE 108
             T + VL A +G   L+  +++H  ++  G ESDL                      FE
Sbjct: 345 RITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFE 404

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            L N  L++ N ++ G      +++A  +++  +  G++PN +T + ++  CV   +   
Sbjct: 405 KLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHW 464

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
              IH   +K G + D+SV N+++ MY+    +  A  +F +M  KD+ISWT M+G    
Sbjct: 465 GREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAK 524

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
                +AL +F++M+++ +  + V   ++++  +    L  G+++H QV+  GL ++  +
Sbjct: 525 SGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHV 584

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
           +N+++ MYS CG +  +R VF+++T++ +V++ A+I GY  +   +EAL  F ++ QE+ 
Sbjct: 585 ANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRL-QEEG 643

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
              D +T +++L A     +LE   ++H +  + G+    S+ N L+S+Y+KCG+   A 
Sbjct: 644 LKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDAL 703

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
           +VF++M   R+V+SWN II G   +G G+  L L+ +M   G  PD  T++S+L+AC HA
Sbjct: 704 LVFDKM-MKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHA 762

Query: 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRA 528
           GL  +G   F  M  +  + P+ EHYGC+VDLL RAG L +   L   +       IW A
Sbjct: 763 GLLEEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRIWGA 822

Query: 529 LLSGCVLH---------------------------------VGRFQDAEALRSGSQKKGI 555
           LL  C +H                                  G +  A  LR   +++G+
Sbjct: 823 LLGACRIHGNVPVAERAAESSLKLDPDNAAVYVALSHMYAAAGMWDSAAKLRKLMEQRGV 882

Query: 556 IKIPGISFL 564
            K PG S++
Sbjct: 883 TKEPGRSWI 891



 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 163/614 (26%), Positives = 298/614 (48%), Gaps = 51/614 (8%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEI--PEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           +D Y  + L++ Y + G I+EA  +++++   E+ V SW+ ++ GY   G+ E+++K   
Sbjct: 174 LDQYTVNALINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLR 233

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL------------------ 102
            M   GL     T + +L +      LE  R IH   +K  L                  
Sbjct: 234 EMQQHGLALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCG 293

Query: 103 ----ESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                 ++F+ ++   +VS   I+ G+ +    + A  +F   +  G+VPN +T + V+ 
Sbjct: 294 SIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLN 353

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
                 +    + +H   +  G   D++V  +++ MY+         Q+F ++  +D+I+
Sbjct: 354 AFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIA 413

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           W  M+G   +     +A +I+ +M++  ++ + +  + L++       L  G+++H++VV
Sbjct: 414 WNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVV 473

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
             G   ++ + N++I+MY++CG +  +R +FN++  K ++SWTA+I G  ++G   EAL 
Sbjct: 474 KDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALA 533

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
            F  M+Q      + +T  SIL A    AAL+   ++H    EAG      V N L++ Y
Sbjct: 534 VFQDMQQAGLKP-NRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMY 592

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
           S CG+V  A  VF+ M   RD+V++N +I GY  +  G+ AL L+ ++ E G  PD  TY
Sbjct: 593 SMCGSVKDARQVFDRMT-QRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTY 651

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
           +++LNAC ++G       I + ++++  +  +      +V   A+ G  SDA  +  K+ 
Sbjct: 652 INMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLG-NALVSTYAKCGSFSDALLVFDKM- 709

Query: 519 EGMGPNI--WRALLSGCVLHVGRFQDA----EALRSGSQKKGIIKI-------------- 558
             M  N+  W A++ GC  H GR QD     E ++    K  I+                
Sbjct: 710 --MKRNVISWNAIIGGCAQH-GRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLE 766

Query: 559 PGISFLNSTSRDFG 572
            G  +  S SRDFG
Sbjct: 767 EGRRYFCSMSRDFG 780



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 120/442 (27%), Positives = 225/442 (50%), Gaps = 13/442 (2%)

Query: 133 QAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVL 192
           +A+ +  + +  G   N+   + +++ C+ +        +H   I+   +LD    N+++
Sbjct: 124 RAMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALI 183

Query: 193 DMYSCLMDLDAAIQIFREMEC--KDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICD 250
           +MY     ++ A Q++ ++    + V SW  M+  +V + Y  +ALK+ REM++  +   
Sbjct: 184 NMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALG 243

Query: 251 TVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFN 310
               + L+S       L+ G+++H + +   L  ++ ++N I+ MY+KCG +  +R VF+
Sbjct: 244 RATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFD 303

Query: 311 QITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALE 370
           ++  KS+VSWT II GY   G +  A   F KM+QE     + IT +++L A    AAL+
Sbjct: 304 KMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGV-VPNRITYINVLNAFSGPAALK 362

Query: 371 ICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGY 430
               +H     AG     +V   L+  Y+KCG+      VFE++   RD+++WNT+I G 
Sbjct: 363 WGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKL-VNRDLIAWNTMIGGL 421

Query: 431 GVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPS 490
              G+ E A  +YH+M   G +P+  TY+ +LNAC +    + G  I ++++++  +   
Sbjct: 422 AEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDI 481

Query: 491 QEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI--WRALLSGCVLHVGRFQDAEALRS 548
                 ++ + AR G + DA  L  K++     +I  W A++ G +   G   +A A+  
Sbjct: 482 SVQ-NALISMYARCGSIKDARLLFNKMVR---KDIISWTAMIGG-LAKSGLGAEALAVFQ 536

Query: 549 GSQKKGII--KIPGISFLNSTS 568
             Q+ G+   ++   S LN+ S
Sbjct: 537 DMQQAGLKPNRVTYTSILNACS 558


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 193/591 (32%), Positives = 308/591 (52%), Gaps = 58/591 (9%)

Query: 35  NVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIH 94
           N V W   I GY  NGF  K+++ +  M  +G+ P+    + V+ A     +L+  R +H
Sbjct: 84  NAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVH 143

Query: 95  GLMVKFGLESDL----------------------FEGLKNPYLVSCNAIVAGFINNKLFQ 132
             ++  G ESD+                      F+ +    +VS NAI+AG+  N    
Sbjct: 144 EDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPY 203

Query: 133 QAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVL 192
           +A+ LF+  + +G+ PN+ T+++V+  C  L +    + IH   I+ G+  DV V N ++
Sbjct: 204 EALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLV 263

Query: 193 DMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTV 252
           +MY+   +++ A ++F  M  +DV SW  ++G +       +AL  F  M+   I  +++
Sbjct: 264 NMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSI 323

Query: 253 ALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQI 312
            +++++   A L  L++G+Q+H   +  G +S   + N+++ MY+KCG+++S+  +F ++
Sbjct: 324 TMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERM 383

Query: 313 TEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEIC 372
            +K++V+W AIISGY Q+G   EAL  FI+M Q +    DS  +VS+L A     ALE  
Sbjct: 384 PKKNVVAWNAIISGYSQHGHPHEALALFIEM-QAQGIKPDSFAIVSVLPACAHFLALEQG 442

Query: 373 LQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGV 432
            Q+HG    +GF     V   L+  Y+KCGNV+ A  +FE M   +DVVSW T+I  YG+
Sbjct: 443 KQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMP-EQDVVSWTTMILAYGI 501

Query: 433 NGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQE 492
           +GHGE ALAL+ KM ETG   D   + +IL AC HAGL + GL  F  M  +  + P  E
Sbjct: 502 HGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLE 561

Query: 493 HYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVG-------------- 538
           HY C+VDLL RAG L +A+G+   +      N+W ALL  C +H                
Sbjct: 562 HYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLFEL 621

Query: 539 -------------------RFQDAEALRSGSQKKGIIKIPGISFLNSTSRD 570
                              R++D   LR   ++KG+ K PG S + +  RD
Sbjct: 622 DPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVV-AVHRD 671



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 142/518 (27%), Positives = 262/518 (50%), Gaps = 29/518 (5%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + L S Y K G ++ A  +FD +P+++VVSW+ +I GYS NG   +++  FS M ++G+ 
Sbjct: 159 TALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIK 218

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY------------ 114
           PNS T+V V+   A L  LE  + IH   ++ G+ESD+    GL N Y            
Sbjct: 219 PNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKL 278

Query: 115 --------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
                   + S NAI+ G+  N    +A+  FN  +  G+ PN++TM++V+  C  L + 
Sbjct: 279 FERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFAL 338

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
              + IHG  I+ G   +  V N++++MY+   ++++A ++F  M  K+V++W  ++  +
Sbjct: 339 EQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGY 398

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
               +  +AL +F EM+   I  D+ A+++++   A    L++GKQ+H   +  G +S +
Sbjct: 399 SQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNV 458

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            +   ++ +Y+KCG++++++ +F ++ E+ +VSWT +I  Y  +G   +AL  F KM QE
Sbjct: 459 VVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKM-QE 517

Query: 347 KTDSVDSITLVSILTASGELAALEICLQ-LHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
               +D I   +ILTA      ++  LQ    +  + G         CL+    + G++D
Sbjct: 518 TGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLD 577

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            A  + + M    D   W  ++    ++ + E        + E    PD++ Y  +L+  
Sbjct: 578 EANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLFELD--PDNAGYYVLLSNI 635

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLAR 503
                  + +    +M++E  VK   +  GC V  + R
Sbjct: 636 YAEAQRWEDVAKLRKMMKEKGVK---KQPGCSVVAVHR 670



 Score = 47.0 bits (110), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 29/56 (51%)

Query: 411 FEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           F +     + V W   I GY  NG    AL LY++M  TG  PD   +LS++ ACG
Sbjct: 76  FTQTDIRNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACG 131


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Vitis vinifera]
          Length = 1005

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 190/613 (30%), Positives = 311/613 (50%), Gaps = 58/613 (9%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ L+  Y K G +  A  +FD++ +++ VSW  ++ GY+ NG   + ++ F  M L  +
Sbjct: 266 SNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNV 325

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
             N  + V   +AAA   +LE  + IHG  ++  ++SD                      
Sbjct: 326 RINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQ 385

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           LF GL+   LV+ +AI+A  +     ++A+ LF   +   + PN VT+++++  C  L  
Sbjct: 386 LFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSL 445

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
             L + IH  T+K  +  D+S   +++ MY+      AA+  F  M  +D+++W  ++  
Sbjct: 446 LKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLING 505

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +       +A+ +F ++R S I  D   ++ ++   A+L DL +G  +H  +V  G +S+
Sbjct: 506 YAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESD 565

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
             + N++I MY+KCG L S+  +FN+    K  V+W  II+ Y+QNG A+EA++ F +MR
Sbjct: 566 CHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMR 625

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
            E     +S+T VS+L A+  LAA    +  H    + GF     V N LI  Y+KCG +
Sbjct: 626 LENFHP-NSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQL 684

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           D +  +F EM   +D VSWN ++ GY V+GHG+ A+AL+  M E+    DS +++S+L+A
Sbjct: 685 DYSEKLFNEMDH-KDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSA 743

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C HAGL  +G  IF+ M ++  +KP  EHY C+VDLL RAG   +  G    +       
Sbjct: 744 CRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAG 803

Query: 525 IWRALLSGCVLH---------------------------------VGRFQDAEALRSGSQ 551
           +W ALL  C +H                                  GR+ DA   RS   
Sbjct: 804 VWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMN 863

Query: 552 KKGIIKIPGISFL 564
             G+ K PG S++
Sbjct: 864 DLGLKKTPGCSWV 876



 Score =  238 bits (607), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 158/585 (27%), Positives = 300/585 (51%), Gaps = 25/585 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L+  Y K G +K A  +FD++P+++VV+W+ +I G S +    +++  F  M 
Sbjct: 163 DVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQ 222

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYL-------- 115
           L G+ P+S +++ +      L N+EL RSIHG + +    S +  GL + Y         
Sbjct: 223 LVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVSNGLIDLYSKCGDVDVA 282

Query: 116 ------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
                       VS   ++AG+ +N  F + + LF+  +   +  N V+ ++        
Sbjct: 283 RRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAET 342

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
                 + IHG  ++  +  D+ V   ++ MY+   + + A Q+F  ++ +D+++W+ ++
Sbjct: 343 IDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAII 402

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
              V   Y  +AL +F+EM+  ++  + V L++++   A L  LK GK +H   V   + 
Sbjct: 403 AALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMD 462

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
           S+L    ++++MY+KCG   ++ + FN+++ + +V+W ++I+GY Q G    A++ F K+
Sbjct: 463 SDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKL 522

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
           R    +  D+ T+V ++ A   L  L+    +HG+  + GF     V+N LI  Y+KCG+
Sbjct: 523 RLSAINP-DAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGS 581

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           +  A  +F +  F +D V+WN II  Y  NGH + A++ +H+M      P+S T++S+L 
Sbjct: 582 LPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLP 641

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
           A  +     +G+  F+  I +     +      ++D+ A+ G L  +  L  + ++    
Sbjct: 642 AAAYLAAFREGMA-FHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNE-MDHKDT 699

Query: 524 NIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFLNSTS 568
             W A+LSG  +H G    A AL S  Q+   ++I  +SF++  S
Sbjct: 700 VSWNAMLSGYAVH-GHGDRAIALFSLMQESQ-VQIDSVSFVSVLS 742



 Score =  212 bits (539), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 147/538 (27%), Positives = 269/538 (50%), Gaps = 43/538 (7%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + L++ Y    K   A ++FD  P  + + W+ +I  Y+ +  + ++++ +  M+  GL 
Sbjct: 67  THLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLE 126

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY------------ 114
           P+ +T   VL A  G  NL+     HG + + GLE D+F   GL + Y            
Sbjct: 127 PDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREV 186

Query: 115 --------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
                   +V+ NA++AG   ++   +AV  F   +  G+ P++V++L +  G   L + 
Sbjct: 187 FDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNI 246

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
            LC  IHG   +       +V+N ++D+YS   D+D A ++F +M  +D +SW  MM  +
Sbjct: 247 ELCRSIHGYVFRRDF--SSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGY 304

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
                  + L++F +M+   +  + V+ ++     A   DL++GK++H   +   + S++
Sbjct: 305 AHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDI 364

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            ++  ++ MY+KCG+ + ++ +F  +  + LV+W+AII+  VQ G   EAL+ F +M+ +
Sbjct: 365 LVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQ 424

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
           K    + +TL+SIL A  +L+ L++   +H    +A      S    L+S Y+KCG    
Sbjct: 425 KMKP-NRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTA 483

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           A   F  M   RD+V+WN++I GY   G    A+ +++K+  +   PD+ T + ++ AC 
Sbjct: 484 ALTTFNRMS-SRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPAC- 541

Query: 467 HAGLTND--------GLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK 516
              L ND        GL++      +  VK        ++D+ A+ G L  A  L  K
Sbjct: 542 --ALLNDLDQGTCIHGLIVKLGFESDCHVK------NALIDMYAKCGSLPSAEFLFNK 591



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 98/394 (24%), Positives = 186/394 (47%), Gaps = 34/394 (8%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D    + L+S Y K G    A   F+ +  +++V+W+ +I+GY+  G    ++  F  + 
Sbjct: 464 DLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLR 523

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYL-------- 115
           LS + P++ TMVGV+ A A L +L+    IHGL+VK G ESD    +KN  +        
Sbjct: 524 LSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCH--VKNALIDMYAKCGS 581

Query: 116 -----------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                            V+ N I+A ++ N   ++A+  F+  R     PN+VT ++V+ 
Sbjct: 582 LPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLP 641

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
               L +       H   I++G + +  V NS++DMY+    LD + ++F EM+ KD +S
Sbjct: 642 AAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVS 701

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQL-HAQV 277
           W  M+  +    +   A+ +F  M++S++  D+V+ ++++S     G ++ G+++ H+  
Sbjct: 702 WNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMS 761

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQI-TEKSLVSWTAIISGYVQNGCAR-- 334
               ++ +L     ++ +  + G  D +      +  E     W A++     +   +  
Sbjct: 762 DKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLG 821

Query: 335 -EALNQFIKMRQEKTDSVDSITLVSILTASGELA 367
             AL+  +K+  E  +    + L SI   SG  A
Sbjct: 822 EVALDHLVKL--EPRNPAHFVVLSSIYAQSGRWA 853


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 194/623 (31%), Positives = 320/623 (51%), Gaps = 57/623 (9%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C+D + ++ LL+ Y K   + +A  LFDE+P++N VS+  +I GYS      +++  FS 
Sbjct: 76  CLDLFANNILLNFYVKYDSLPDAAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSR 135

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------- 105
           +   G   N F    VL      +  +L  S+H  + K G +SD                
Sbjct: 136 LQGEGHELNPFVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGY 195

Query: 106 ------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                 +F+ ++   +VS   +VA ++ N+ F++++ LF+  R  G  PN  T  +V++ 
Sbjct: 196 AECARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKA 255

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           CV L    + + +HG   K   + ++ V   ++D+Y    D+D A+Q+F EM   DVI W
Sbjct: 256 CVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPW 315

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           + M+  +   E + +A+++F  MR+  ++ +   L +L+   A L DL+ G Q+H  VV 
Sbjct: 316 SFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVK 375

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            GL   + +SN+++ MY+KCG +++S  +F++    + VSW  +I GYVQ G   +AL  
Sbjct: 376 VGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALIL 435

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           F  M + +    + +T  S+L A   +AALE   Q+H ++ +  + +   V N LI  Y+
Sbjct: 436 FKDMLECQVQGTE-VTYSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVVGNALIDMYA 494

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           KCGN+  A +VF +M    D VSWN +I GY V+G    AL  +  M ET   PD  T++
Sbjct: 495 KCGNIKDARLVF-DMLREHDQVSWNAMISGYSVHGLYGEALKTFESMLETECKPDKVTFV 553

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519
            IL+AC +AGL + G   F  M+EE  ++P  EHY C+V LL R+G L  A+ L  ++  
Sbjct: 554 GILSACSNAGLLDRGQAYFKSMVEEYDIEPCAEHYTCMVWLLGRSGHLDKAAKLVHEIPF 613

Query: 520 GMGPNIWRALLSGCVLH---------------------------------VGRFQDAEAL 546
                +WRALLS CV+H                                   R+ +  ++
Sbjct: 614 EPSVMVWRALLSACVIHNDVELGRISAQRVLEIEPEDEATHVLLSNIYANARRWGNVASI 673

Query: 547 RSGSQKKGIIKIPGISFLNSTSR 569
           R+  ++KGI K PG+S++ +  R
Sbjct: 674 RTSMKRKGIRKEPGLSWIENQGR 696



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 88/312 (28%), Positives = 150/312 (48%), Gaps = 2/312 (0%)

Query: 155 TVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
           ++++ C+  G  A  + +H   IK G  LD+  NN +L+ Y     L  A ++F EM  +
Sbjct: 49  SLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPDAAKLFDEMPDR 108

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
           + +S+  ++  +       +A+ +F  ++      +      ++ +       K G  +H
Sbjct: 109 NTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEWAKLGFSVH 168

Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
           A V   G  S+  +  ++I  YS CG  + +R VF+ I  K +VSWT +++ YV+N C  
Sbjct: 169 ACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYVENECFE 228

Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
           E+L  F +MR       ++ T  S+L A   L    +   +HG AF+  +     V   L
Sbjct: 229 ESLKLFSRMRIVGFKP-NNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVEL 287

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           I  Y K G+VD A  VFEEM    DV+ W+ +I  Y  +   E A+ ++ +M     +P+
Sbjct: 288 IDLYIKSGDVDDALQVFEEMP-KDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPN 346

Query: 455 SSTYLSILNACG 466
             T  S+L AC 
Sbjct: 347 QFTLASLLQACA 358



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 109/219 (49%), Gaps = 17/219 (7%)

Query: 265 GDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAII 324
           GD   GK LH +++  G   +L  +N ++  Y K   L  +  +F+++ +++ VS+  +I
Sbjct: 58  GDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPDAAKLFDEMPDRNTVSFVTLI 117

Query: 325 SGYVQNGCAR--EALNQFIKMRQEKTDSVDSITLVSILT--ASGELAALEICLQLHGIAF 380
            GY Q  C R  EA+  F +++ E  + ++     ++L    S E A L     +H   +
Sbjct: 118 QGYSQ--CLRFSEAIGLFSRLQGEGHE-LNPFVFSTVLKLLVSAEWAKLG--FSVHACVY 172

Query: 381 EAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETAL 440
           + GF     V   LI  YS CG  + A  VF+ + + +D+VSW  ++  Y  N   E +L
Sbjct: 173 KLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEY-KDMVSWTGMVACYVENECFEESL 231

Query: 441 ALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFN 479
            L+ +M   G  P++ T+ S+L AC        GL +FN
Sbjct: 232 KLFSRMRIVGFKPNNFTFASVLKACV-------GLEVFN 263


>gi|296081839|emb|CBI20844.3| unnamed protein product [Vitis vinifera]
          Length = 700

 Score =  313 bits (802), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 189/555 (34%), Positives = 290/555 (52%), Gaps = 28/555 (5%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS-- 65
           SS L+S Y K  +IKEA  LFD++PE++ VSW+ +I GYS  G +E++   F  M+ S  
Sbjct: 79  SSGLISMYSKHDRIKEARFLFDDMPERDDVSWNSMIAGYSQRGLNEEACGLFCSMINSCE 138

Query: 66  --GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF---------------- 107
              LL + FT+  VL A  GL    + + +HG  VK G +SDLF                
Sbjct: 139 NWKLLVSDFTLATVLKACGGLGCSRIGKCVHGYAVKIGFDSDLFVSGSTVYMYCKCGILD 198

Query: 108 ------EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                 + ++N  +V+ N ++ G+  N   ++A+ LF      G  PN  T   V++   
Sbjct: 199 MAGLAFDQIENKDIVAWNTMITGYAQNCYEEEAIELFYQMELEGFKPNDTTFCCVLKAST 258

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
           A+   A+    H   +KLG  +DV V  +++DMYS   D++   + F EM  ++++S+  
Sbjct: 259 AMSDSAVGRCFHAKVLKLGCSMDVFVATALVDMYSKFYDIEDVERAFGEMSKRNLVSFNA 318

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++  +       +AL+++ +++   +  D+   + L S  ++   +  G Q+H   V  G
Sbjct: 319 LITGYSLMGKYEEALRVYSQLQSEGMEPDSFTFVGLFSSCSVSSTVAEGAQVHVHSVKFG 378

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           L S++ + NSI+  YSKCG  DS+   F  I   + V W  IISG+ QNG   +AL QF 
Sbjct: 379 LDSDVSVGNSIVNFYSKCGFTDSALEAFESINRPNSVCWAGIISGFAQNGEGEKALMQFC 438

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           KMR+   D  D  +  S++ A    AA+E    LH    ++G      V + +I  YSKC
Sbjct: 439 KMRK-FIDKTDEFSSSSVIKAVSSWAAVEQGRHLHAHVMKSGLDCTIYVGSAVIDMYSKC 497

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G V+ A  VF  M   ++VVSWN++I GY  NG  + AL L+ +MT +G +P + T++ I
Sbjct: 498 GMVEDAQKVFSVMP-EKNVVSWNSMITGYAQNGFCKEALLLFQEMTSSGILPTAVTFVGI 556

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L AC HAGL  +G   +N M+    + PS EH  C+VDLL RAG L +A           
Sbjct: 557 LFACSHAGLVEEGRNFYNLMVHNYGIPPSMEHCTCMVDLLGRAGYLEEAEAFLLSSSFSK 616

Query: 522 GPNIWRALLSGCVLH 536
            P IW +LLS C +H
Sbjct: 617 EPGIWGSLLSACGVH 631



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 121/460 (26%), Positives = 222/460 (48%), Gaps = 30/460 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + S   +  Y K G +  A   FD+I  K++V+W+ +I GY+ N + E++++ F  M 
Sbjct: 180 DLFVSGSTVYMYCKCGILDMAGLAFDQIENKDIVAWNTMITGYAQNCYEEEAIELFYQME 239

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF---------------E 108
           L G  PN  T   VL A+  + +  + R  H  ++K G   D+F               E
Sbjct: 240 LEGFKPNDTTFCCVLKASTAMSDSAVGRCFHAKVLKLGCSMDVFVATALVDMYSKFYDIE 299

Query: 109 GLKNPY-------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
            ++  +       LVS NA++ G+     +++A+ +++  +  G+ P++ T + +   C 
Sbjct: 300 DVERAFGEMSKRNLVSFNALITGYSLMGKYEEALRVYSQLQSEGMEPDSFTFVGLFSSCS 359

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
              + A    +H  ++K GL  DVSV NS+++ YS     D+A++ F  +   + + W  
Sbjct: 360 VSSTVAEGAQVHVHSVKFGLDSDVSVGNSIVNFYSKCGFTDSALEAFESINRPNSVCWAG 419

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++  F        AL  F +MRK     D  +  ++I   +    +++G+ LHA V+  G
Sbjct: 420 IISGFAQNGEGEKALMQFCKMRKFIDKTDEFSSSSVIKAVSSWAAVEQGRHLHAHVMKSG 479

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           L   + + +++I MYSKCG ++ ++ VF+ + EK++VSW ++I+GY QNG  +EAL  F 
Sbjct: 480 LDCTIYVGSAVIDMYSKCGMVEDAQKVFSVMPEKNVVSWNSMITGYAQNGFCKEALLLF- 538

Query: 342 KMRQEKTDS---VDSITLVSILTASGELAALEICLQLHGI-AFEAGFPRYRSVQNCLISS 397
              QE T S     ++T V IL A      +E     + +     G P       C++  
Sbjct: 539 ---QEMTSSGILPTAVTFVGILFACSHAGLVEEGRNFYNLMVHNYGIPPSMEHCTCMVDL 595

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGE 437
             + G ++ A        F ++   W +++   GV+ + +
Sbjct: 596 LGRAGYLEEAEAFLLSSSFSKEPGIWGSLLSACGVHKNSD 635



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 135/528 (25%), Positives = 251/528 (47%), Gaps = 34/528 (6%)

Query: 33  EKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARS 92
           E NVV W+  I   +  G  ++++  F  M+ +G+ PN+ T    + A A      LA S
Sbjct: 3   ETNVVRWTSKITDNARRGLVDQALSCFLQMLRAGIEPNAITYSATISACAQSTRPSLATS 62

Query: 93  IHGLMVKFGLESDLF--EGLKNPYL--------------------VSCNAIVAGFINNKL 130
           +H L++K G  + LF   GL + Y                     VS N+++AG+    L
Sbjct: 63  LHCLILKKGFSNQLFVSSGLISMYSKHDRIKEARFLFDDMPERDDVSWNSMIAGYSQRGL 122

Query: 131 FQQAVLLF----NFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVS 186
            ++A  LF    N      L+ +  T+ TV++ C  LG   + + +HG  +K+G   D+ 
Sbjct: 123 NEEACGLFCSMINSCENWKLLVSDFTLATVLKACGGLGCSRIGKCVHGYAVKIGFDSDLF 182

Query: 187 VNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSR 246
           V+ S + MY     LD A   F ++E KD+++W  M+  +    Y  +A+++F +M    
Sbjct: 183 VSGSTVYMYCKCGILDMAGLAFDQIENKDIVAWNTMITGYAQNCYEEEAIELFYQMELEG 242

Query: 247 IICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSR 306
              +      ++  +  + D   G+  HA+V+  G   ++ ++ +++ MYSK  D++   
Sbjct: 243 FKPNDTTFCCVLKASTAMSDSAVGRCFHAKVLKLGCSMDVFVATALVDMYSKFYDIEDVE 302

Query: 307 SVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGEL 366
             F ++++++LVS+ A+I+GY   G   EAL  + +++ E  +  DS T V + ++    
Sbjct: 303 RAFGEMSKRNLVSFNALITGYSLMGKYEEALRVYSQLQSEGMEP-DSFTFVGLFSSCSVS 361

Query: 367 AALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTI 426
           + +    Q+H  + + G     SV N +++ YSKCG  D A   FE +    + V W  I
Sbjct: 362 STVAEGAQVHVHSVKFGLDSDVSVGNSIVNFYSKCGFTDSALEAFESIN-RPNSVCWAGI 420

Query: 427 IYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENK 486
           I G+  NG GE AL  + KM +  +  D  +  S++ A         G  +   +++   
Sbjct: 421 ISGFAQNGEGEKALMQFCKMRKFIDKTDEFSSSSVIKAVSSWAAVEQGRHLHAHVMKSG- 479

Query: 487 VKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI--WRALLSG 532
           +  +      V+D+ ++ G + DA  +   + E    N+  W ++++G
Sbjct: 480 LDCTIYVGSAVIDMYSKCGMVEDAQKVFSVMPE---KNVVSWNSMITG 524



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 159/328 (48%), Gaps = 23/328 (7%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D + ++ L+  Y K   I++ E  F E+ ++N+VS++ +I GYS+ G +E++++ +S +
Sbjct: 280 MDVFVATALVDMYSKFYDIEDVERAFGEMSKRNLVSFNALITGYSLMGKYEEALRVYSQL 339

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------- 106
              G+ P+SFT VG+  + +    +     +H   VKFGL+SD+                
Sbjct: 340 QSEGMEPDSFTFVGLFSSCSVSSTVAEGAQVHVHSVKFGLDSDVSVGNSIVNFYSKCGFT 399

Query: 107 ------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                 FE +  P  V    I++GF  N   ++A++ F   R      +  +  +VI+  
Sbjct: 400 DSALEAFESINRPNSVCWAGIISGFAQNGEGEKALMQFCKMRKFIDKTDEFSSSSVIKAV 459

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
            +  +      +H   +K GL   + V ++V+DMYS    ++ A ++F  M  K+V+SW 
Sbjct: 460 SSWAAVEQGRHLHAHVMKSGLDCTIYVGSAVIDMYSKCGMVEDAQKVFSVMPEKNVVSWN 519

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+  +    +  +AL +F+EM  S I+   V  + ++   +  G ++ G+  +  +V  
Sbjct: 520 SMITGYAQNGFCKEALLLFQEMTSSGILPTAVTFVGILFACSHAGLVEEGRNFYNLMVHN 579

Query: 281 -GLQSELRLSNSIIAMYSKCGDLDSSRS 307
            G+   +     ++ +  + G L+ + +
Sbjct: 580 YGIPPSMEHCTCMVDLLGRAGYLEEAEA 607


>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 672

 Score =  312 bits (800), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 194/626 (30%), Positives = 317/626 (50%), Gaps = 59/626 (9%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  S L+  Y ++G I++A  LFD++P K+ V W+++++G+   G    ++K F  M
Sbjct: 5   VDEFVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVFEDM 64

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMV-------------------KFGLE 103
                 PNS T   VL   A     E    +HGL++                   KFG  
Sbjct: 65  RNCQTKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSKFGQL 124

Query: 104 SD---LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
           SD   LF  + +  +V+ N ++AGF+ N    +A LLF+    +G+ P+++T  + +   
Sbjct: 125 SDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASFLPSV 184

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
               S    + IHG  ++ G+ LDV + ++++D+Y    D+  A +IF++    D++  T
Sbjct: 185 TESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDIVVCT 244

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++  +V      DAL+IFR + + ++  + V L +++   A L  L  GK+LHA ++  
Sbjct: 245 AIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHANILKH 304

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           GL     + ++I+ MY+KCG LD +  +F ++ EK  V W AII+   QNG  +EA++ F
Sbjct: 305 GLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQEAIDLF 364

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            +M +E   S D +++ + L+A   L AL     +H    +  F      ++ LI  Y K
Sbjct: 365 RQMGREGL-SYDCVSISAALSACANLPALHHGKAIHSFMIKGAFDSEVFAESALIDMYGK 423

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CGN+ +A  VF+ M   ++ VSWN+II  YG +GH E +LAL+HKM E G  PD  T+L+
Sbjct: 424 CGNLSVARCVFDMMR-EKNEVSWNSIIAAYGSHGHLEVSLALFHKMLEDGIQPDHVTFLT 482

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           IL+ACGHAG  + G+  F  M EE  +    EHY C+VDL  RAG L++A      +   
Sbjct: 483 ILSACGHAGQVDKGIQYFRCMTEEYGIPARMEHYACIVDLFGRAGRLNEAFETIKNMPFS 542

Query: 521 MGPNIWRALLSGCVLH---------------------------------VGRFQDAEALR 547
               +W  LL  C +H                                  G++     +R
Sbjct: 543 PDDGVWGTLLGACRVHGNVELAEVASRCLLDLDPENSGCYVLLSNVHADAGQWGSVRKIR 602

Query: 548 SGSQKKGIIKIPGISFL--NSTSRDF 571
           S  +K+G+ K+PG S++  N T+  F
Sbjct: 603 SLMKKRGVQKVPGYSWIEVNKTTHMF 628



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 105/378 (27%), Positives = 192/378 (50%), Gaps = 7/378 (1%)

Query: 179 LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKI 238
           +G  +D  V +S++ +Y+    ++ A ++F +M  KD + W  M+  FV       A+K+
Sbjct: 1   MGFNVDEFVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKV 60

Query: 239 FREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSK 298
           F +MR  +   +++   +++S+ A     + G QLH  V+  G   +  ++N+++AMYSK
Sbjct: 61  FEDMRNCQTKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSK 120

Query: 299 CGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVS 358
            G L  +  +FN + + ++V+W  +I+G+VQNG   EA   F +M      S DSIT  S
Sbjct: 121 FGQLSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGV-SPDSITFAS 179

Query: 359 ILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLR 418
            L +  E A+L+   ++HG     G      +++ LI  Y KC +V +A  +F++   + 
Sbjct: 180 FLPSVTESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNV- 238

Query: 419 DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIF 478
           D+V    II GY +NG    AL ++  + E    P++ T  S+L AC      N G  + 
Sbjct: 239 DIVVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELH 298

Query: 479 NQMIEENKVKPSQEHYG-CVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHV 537
             +++       + H G  ++D+ A+ G L  A  +  ++ E      W A+++ C  + 
Sbjct: 299 ANILKHG--LDERRHVGSAIMDMYAKCGRLDLAYQIFRRMPE-KDAVCWNAIITNCSQN- 354

Query: 538 GRFQDAEALRSGSQKKGI 555
           G+ Q+A  L     ++G+
Sbjct: 355 GKPQEAIDLFRQMGREGL 372


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  312 bits (799), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 188/613 (30%), Positives = 309/613 (50%), Gaps = 58/613 (9%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ L+  Y K G +  A  +FD++ +++ VSW  ++ GY+ NG   + ++ F  M L  +
Sbjct: 266 SNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNV 325

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
             N  + V   +AAA   +LE  + IHG  ++  ++SD                      
Sbjct: 326 RINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQ 385

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           LF GL+   LV+ +AI+A  +     ++A+ LF   +   + PN VT+++++  C  L  
Sbjct: 386 LFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSL 445

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
             L + IH  T+K  +  D+S   +++ MY+      AA+  F  M  +D+++W  ++  
Sbjct: 446 LKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLING 505

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +       +A+ +F ++R S I  D   ++ ++   A+L DL +G  +H  +V  G +S+
Sbjct: 506 YAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESD 565

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
             + N++I MY+KCG L S+  +FN+    K  V+W  II+ Y+QNG A+EA++ F +MR
Sbjct: 566 CHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMR 625

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
            E     +S+T VS+L A+  LAA    +  H    + GF     V N LI  Y+KCG +
Sbjct: 626 LENFHP-NSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQL 684

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
             +  +F EM   +D VSWN ++ GY V+GHG+ A+AL+  M E+    DS +++S+L+A
Sbjct: 685 XYSEKLFNEMDH-KDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSA 743

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C H GL  +G  IF+ M ++  +KP  EHY C+VDLL RAG   +  G    +       
Sbjct: 744 CRHXGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAG 803

Query: 525 IWRALLSGCVLH---------------------------------VGRFQDAEALRSGSQ 551
           +W ALL  C +H                                  GR+ DA   RS   
Sbjct: 804 VWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMN 863

Query: 552 KKGIIKIPGISFL 564
             G+ K PG S++
Sbjct: 864 DLGLKKTPGCSWV 876



 Score =  238 bits (607), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 158/585 (27%), Positives = 300/585 (51%), Gaps = 25/585 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L+  Y K G +K A  +FD++P+++VV+W+ +I G S +    +++  F  M 
Sbjct: 163 DVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQ 222

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYL-------- 115
           L G+ P+S +++ +      L N+EL RSIHG + +    S +  GL + Y         
Sbjct: 223 LVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVSNGLIDLYSKCGDVDVA 282

Query: 116 ------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
                       VS   ++AG+ +N  F + + LF+  +   +  N V+ ++        
Sbjct: 283 RRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAET 342

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
                 + IHG  ++  +  D+ V   ++ MY+   + + A Q+F  ++ +D+++W+ ++
Sbjct: 343 IDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAII 402

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
              V   Y  +AL +F+EM+  ++  + V L++++   A L  LK GK +H   V   + 
Sbjct: 403 AALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMD 462

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
           S+L    ++++MY+KCG   ++ + FN+++ + +V+W ++I+GY Q G    A++ F K+
Sbjct: 463 SDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKL 522

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
           R    +  D+ T+V ++ A   L  L+    +HG+  + GF     V+N LI  Y+KCG+
Sbjct: 523 RLSAINP-DAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGS 581

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           +  A  +F +  F +D V+WN II  Y  NGH + A++ +H+M      P+S T++S+L 
Sbjct: 582 LPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLP 641

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
           A  +     +G+  F+  I +     +      ++D+ A+ G L  +  L  + ++    
Sbjct: 642 AAAYLAAFREGMA-FHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNE-MDHKDT 699

Query: 524 NIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFLNSTS 568
             W A+LSG  +H G    A AL S  Q+   ++I  +SF++  S
Sbjct: 700 VSWNAMLSGYAVH-GHGDRAIALFSLMQESQ-VQIDSVSFVSVLS 742



 Score =  211 bits (538), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 147/538 (27%), Positives = 269/538 (50%), Gaps = 43/538 (7%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + L++ Y    K   A ++FD  P  + + W+ +I  Y+ +  + ++++ +  M+  GL 
Sbjct: 67  THLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLE 126

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY------------ 114
           P+ +T   VL A  G  NL+     HG + + GLE D+F   GL + Y            
Sbjct: 127 PDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREV 186

Query: 115 --------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
                   +V+ NA++AG   ++   +AV  F   +  G+ P++V++L +  G   L + 
Sbjct: 187 FDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNI 246

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
            LC  IHG   +       +V+N ++D+YS   D+D A ++F +M  +D +SW  MM  +
Sbjct: 247 ELCRSIHGYVFRRDF--SSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGY 304

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
                  + L++F +M+   +  + V+ ++     A   DL++GK++H   +   + S++
Sbjct: 305 AHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDI 364

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            ++  ++ MY+KCG+ + ++ +F  +  + LV+W+AII+  VQ G   EAL+ F +M+ +
Sbjct: 365 LVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQ 424

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
           K    + +TL+SIL A  +L+ L++   +H    +A      S    L+S Y+KCG    
Sbjct: 425 KMKP-NRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTA 483

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           A   F  M   RD+V+WN++I GY   G    A+ +++K+  +   PD+ T + ++ AC 
Sbjct: 484 ALTTFNRMS-SRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPAC- 541

Query: 467 HAGLTND--------GLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK 516
              L ND        GL++      +  VK        ++D+ A+ G L  A  L  K
Sbjct: 542 --ALLNDLDQGTCIHGLIVKLGFESDCHVK------NALIDMYAKCGSLPSAEFLFNK 591


>gi|147819295|emb|CAN68962.1| hypothetical protein VITISV_019277 [Vitis vinifera]
          Length = 676

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 197/620 (31%), Positives = 321/620 (51%), Gaps = 61/620 (9%)

Query: 5   PYNS---SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           PY+    S L + Y   G    A  LFDE+   ++ SW+ +I  Y+ +G    ++  F  
Sbjct: 53  PYSHHLLSSLAAAYAMCGCAPHARKLFDELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQ 112

Query: 62  MMLSGL-LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--------------- 105
           M+ SG   P+++T   V+ A       E+   IH   V  G +SD               
Sbjct: 113 MLASGRRWPDNYTYPFVIKACGDYLLPEMGALIHARTVMSGFDSDAFVQNSLMAMYMNCG 172

Query: 106 -------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                  +F+ ++   LVS N ++ G+  N   ++A+++F++  G G+ P+  T+++V+ 
Sbjct: 173 EMEVARRVFDLMRERTLVSWNTMINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLP 232

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C  L    +   +H L     L  D+SV NS+LDMY+   ++D A  IF EM+ +DV+S
Sbjct: 233 VCSYLKELEVGRRVHALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVS 292

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           WT MM  ++    A  AL + + M+   +  + V L +++S  A L  LK G+ LH   +
Sbjct: 293 WTTMMNGYILNGDARSALLLCQMMQFESVKPNFVTLASVLSACASLYSLKHGRCLHGWAI 352

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
              L+SE+ +  ++I MY+KC +++ S  VF++ +++    W AIISG + NG +R+A+ 
Sbjct: 353 RQKLESEVIVETALIDMYAKCNNVNLSFRVFSKXSKQRTAPWNAIISGCIHNGLSRKAIE 412

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
            F +M  E  D  D+ TL S+L A   L  L+    +HG    +GF     V   LI  Y
Sbjct: 413 LFKQMLMEAVDPNDA-TLNSLLPAYAFLTDLQQARNMHGYLIRSGFLSRIEVATILIDIY 471

Query: 399 SKCGNVDLAYIVFEEMGFL-RDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           SKCG+++ A+ +F  +    +D+++W+ II GYG++GHGETA++L+ +M ++G  P+  T
Sbjct: 472 SKCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMHGHGETAISLFDQMVQSGVKPNEIT 531

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL 517
           + SIL+AC HAGL ++GL +F  M+E+N++    +HY CV+DLL RAG L +A  L   +
Sbjct: 532 FTSILHACSHAGLVDEGLGLFKFMLEDNQMSLRTDHYTCVIDLLGRAGRLEEAYELIRTM 591

Query: 518 LEGMGPNIWRALLSGCVLH---------------------------------VGRFQDAE 544
                  +W ALL  CV+H                                 VGR++DAE
Sbjct: 592 AFRPNHAVWGALLGSCVIHENVELGEVAAKWLFELEPGNTGNYVLLANIYSAVGRWRDAE 651

Query: 545 ALRSGSQKKGIIKIPGISFL 564
            +R      G+ K P  S +
Sbjct: 652 HVRLMMNNIGLRKTPAHSLI 671



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 113/449 (25%), Positives = 219/449 (48%), Gaps = 26/449 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L++ Y   G+++ A  +FD + E+ +VSW+ +I+GY  NG  ++++  F  M+
Sbjct: 157 DAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYFKNGCVKEALMVFDWMI 216

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
             G+ P+  T+V VL   + L+ LE+ R +H L+    L  D                  
Sbjct: 217 GKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGEDISVWNSLLDMYAKCGNMD 276

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +F  +    +VS   ++ G+I N   + A+LL    +   + PN VT+ +V+  C 
Sbjct: 277 EAQMIFYEMDKRDVVSWTTMMNGYILNGDARSALLLCQMMQFESVKPNFVTLASVLSACA 336

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
           +L S      +HG  I+  L  +V V  +++DMY+   +++ + ++F +   +    W  
Sbjct: 337 SLYSLKHGRCLHGWAIRQKLESEVIVETALIDMYAKCNNVNLSFRVFSKXSKQRTAPWNA 396

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++   +    +  A+++F++M    +  +   L +L+   A L DL++ + +H  ++  G
Sbjct: 397 IISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLIRSG 456

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT--EKSLVSWTAIISGYVQNGCAREALNQ 339
             S + ++  +I +YSKCG L+S+ ++FN I   +K +++W+AII+GY  +G    A++ 
Sbjct: 457 FLSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMHGHGETAISL 516

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ-NCLISSY 398
           F +M Q      + IT  SIL A      ++  L L     E      R+    C+I   
Sbjct: 517 FDQMVQSGVKP-NEITFTSILHACSHAGLVDEGLGLFKFMLEDNQMSLRTDHYTCVIDLL 575

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
            + G ++ AY +   M F  +   W  ++
Sbjct: 576 GRAGRLEEAYELIRTMAFRPNHAVWGALL 604



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 123/243 (50%), Gaps = 5/243 (2%)

Query: 271 KQLHAQVVLGGLQSEL---RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGY 327
           KQ+HA  +  GL S      L +S+ A Y+ CG    +R +F+++   SL SW A+I  Y
Sbjct: 38  KQIHAHTITLGLLSSPYSHHLLSSLAAAYAMCGCAPHARKLFDELRNPSLFSWNAMIRMY 97

Query: 328 VQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRY 387
             +G + +AL  F++M        D+ T   ++ A G+    E+   +H     +GF   
Sbjct: 98  TNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACGDYLLPEMGALIHARTVMSGFDSD 157

Query: 388 RSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMT 447
             VQN L++ Y  CG +++A  VF+ M   R +VSWNT+I GY  NG  + AL ++  M 
Sbjct: 158 AFVQNSLMAMYMNCGEMEVARRVFDLMR-ERTLVSWNTMINGYFKNGCVKEALMVFDWMI 216

Query: 448 ETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCL 507
             G  PD +T +S+L  C +      G  + + ++E   +      +  ++D+ A+ G +
Sbjct: 217 GKGIEPDCATVVSVLPVCSYLKELEVGRRV-HALVEVKNLGEDISVWNSLLDMYAKCGNM 275

Query: 508 SDA 510
            +A
Sbjct: 276 DEA 278


>gi|225452956|ref|XP_002279032.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39350
           [Vitis vinifera]
 gi|296082987|emb|CBI22288.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 197/620 (31%), Positives = 321/620 (51%), Gaps = 61/620 (9%)

Query: 5   PYNS---SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           PY+    S L + Y   G    A  LFDE+   ++ SW+ +I  Y+ +G    ++  F  
Sbjct: 53  PYSHHLLSSLAAAYAMFGCAPHARKLFDELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQ 112

Query: 62  MMLSGL-LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--------------- 105
           M+ SG   P+++T   V+ A       E+   IH   V  G +SD               
Sbjct: 113 MLASGRRWPDNYTYPFVIKACGDYLLPEMGALIHARTVMSGFDSDAFVQNSLMAMYMNCG 172

Query: 106 -------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                  +F+ ++   LVS N ++ G+  N   ++A+++F++  G G+ P+  T+++V+ 
Sbjct: 173 EMEVARRVFDLMRERTLVSWNTMINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLP 232

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C  L    +   +H L     L  D+SV NS+LDMY+   ++D A  IF EM+ +DV+S
Sbjct: 233 VCSYLKELEVGRRVHALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVS 292

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           WT MM  ++    A  AL + + M+   +  + V L +++S  A L  LK G+ LH   +
Sbjct: 293 WTTMMNGYILNGDARSALLLCQMMQFESVKPNFVTLASVLSACASLYSLKHGRCLHGWAI 352

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
              L+SE+ +  ++I MY+KC +++ S  VF++ +++    W AIISG + NG +R+A+ 
Sbjct: 353 RQKLESEVIVETALIDMYAKCNNVNLSFRVFSKTSKQRTAPWNAIISGCIHNGLSRKAIE 412

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
            F +M  E  D  D+ TL S+L A   L  L+    +HG    +GF     V   LI  Y
Sbjct: 413 LFKQMLMEAVDPNDA-TLNSLLPAYAFLTDLQQARNMHGYLIRSGFLSRIEVATILIDIY 471

Query: 399 SKCGNVDLAYIVFEEMGFL-RDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           SKCG+++ A+ +F  +    +D+++W+ II GYG++GHGETA++L+ +M ++G  P+  T
Sbjct: 472 SKCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMHGHGETAISLFDQMVQSGVKPNEIT 531

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL 517
           + SIL+AC HAGL ++GL +F  M+E+N++    +HY CV+DLL RAG L +A  L   +
Sbjct: 532 FTSILHACSHAGLVDEGLGLFKFMLEDNQMSLRTDHYTCVIDLLGRAGRLEEAYELIRTM 591

Query: 518 LEGMGPNIWRALLSGCVLH---------------------------------VGRFQDAE 544
                  +W ALL  CV+H                                 VGR++DAE
Sbjct: 592 AFRPNHAVWGALLGSCVIHENVELGEVAAKWLFELEPGNTGNYVLLANIYSAVGRWRDAE 651

Query: 545 ALRSGSQKKGIIKIPGISFL 564
            +R      G+ K P  S +
Sbjct: 652 HVRLMMNNIGLRKTPAHSLI 671



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 113/449 (25%), Positives = 219/449 (48%), Gaps = 26/449 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L++ Y   G+++ A  +FD + E+ +VSW+ +I+GY  NG  ++++  F  M+
Sbjct: 157 DAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYFKNGCVKEALMVFDWMI 216

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
             G+ P+  T+V VL   + L+ LE+ R +H L+    L  D                  
Sbjct: 217 GKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGEDISVWNSLLDMYAKCGNMD 276

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +F  +    +VS   ++ G+I N   + A+LL    +   + PN VT+ +V+  C 
Sbjct: 277 EAQMIFYEMDKRDVVSWTTMMNGYILNGDARSALLLCQMMQFESVKPNFVTLASVLSACA 336

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
           +L S      +HG  I+  L  +V V  +++DMY+   +++ + ++F +   +    W  
Sbjct: 337 SLYSLKHGRCLHGWAIRQKLESEVIVETALIDMYAKCNNVNLSFRVFSKTSKQRTAPWNA 396

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++   +    +  A+++F++M    +  +   L +L+   A L DL++ + +H  ++  G
Sbjct: 397 IISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLIRSG 456

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT--EKSLVSWTAIISGYVQNGCAREALNQ 339
             S + ++  +I +YSKCG L+S+ ++FN I   +K +++W+AII+GY  +G    A++ 
Sbjct: 457 FLSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMHGHGETAISL 516

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ-NCLISSY 398
           F +M Q      + IT  SIL A      ++  L L     E      R+    C+I   
Sbjct: 517 FDQMVQSGVKP-NEITFTSILHACSHAGLVDEGLGLFKFMLEDNQMSLRTDHYTCVIDLL 575

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
            + G ++ AY +   M F  +   W  ++
Sbjct: 576 GRAGRLEEAYELIRTMAFRPNHAVWGALL 604



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 122/243 (50%), Gaps = 5/243 (2%)

Query: 271 KQLHAQVVLGGLQSEL---RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGY 327
           KQ+HA  +  GL S      L +S+ A Y+  G    +R +F+++   SL SW A+I  Y
Sbjct: 38  KQIHAHTITLGLLSSPYSHHLLSSLAAAYAMFGCAPHARKLFDELRNPSLFSWNAMIRMY 97

Query: 328 VQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRY 387
             +G + +AL  F++M        D+ T   ++ A G+    E+   +H     +GF   
Sbjct: 98  TNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACGDYLLPEMGALIHARTVMSGFDSD 157

Query: 388 RSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMT 447
             VQN L++ Y  CG +++A  VF+ M   R +VSWNT+I GY  NG  + AL ++  M 
Sbjct: 158 AFVQNSLMAMYMNCGEMEVARRVFDLMR-ERTLVSWNTMINGYFKNGCVKEALMVFDWMI 216

Query: 448 ETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCL 507
             G  PD +T +S+L  C +      G  + + ++E   +      +  ++D+ A+ G +
Sbjct: 217 GKGIEPDCATVVSVLPVCSYLKELEVGRRV-HALVEVKNLGEDISVWNSLLDMYAKCGNM 275

Query: 508 SDA 510
            +A
Sbjct: 276 DEA 278


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 185/560 (33%), Positives = 305/560 (54%), Gaps = 30/560 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + ++KL S Y K   ++ A  +FDE P  NV  W+  +  Y      E++++ F H+M
Sbjct: 35  DTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREKQWEETLRLF-HLM 93

Query: 64  L--SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK---------------------- 99
           +  +G  P++FT+   L A AGL+ LEL + IHG   K                      
Sbjct: 94  ICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGSDMFVGSALVELYSKCG 153

Query: 100 -FGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFN-FFRGSGLVPNAVTMLTVI 157
             G    +FE  + P  V   ++V G+  N   ++A+ LF+       +V + VT+++V+
Sbjct: 154 QMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVV 213

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
             C  L +      +HGL I+     D+ + NS+L++Y+       A  +F +M  KDVI
Sbjct: 214 SACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVI 273

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           SW+ M+  + + E A +AL +F EM + R   ++V +++ +   A+  +L+ GK++H   
Sbjct: 274 SWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIA 333

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           V  G + +  +S ++I MY KC   D +  +F ++ +K +VSW A++SGY QNG A +++
Sbjct: 334 VWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSM 393

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
             F  M  +     D++ +V IL AS EL   +  L LHG    +GF     V   LI  
Sbjct: 394 GVFRNMLSDGIQP-DAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIEL 452

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV-PDSS 456
           YSKCG++  A  +F+ M  +RDVV W+++I  YG++G G  AL ++ +M +   V P++ 
Sbjct: 453 YSKCGSLGDAVKLFKGM-IVRDVVIWSSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNNV 511

Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK 516
           T+LSIL+AC HAGL  +GL IF++M+ + +++P  EH+G +VDLL R G L  A  +  +
Sbjct: 512 TFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPDSEHFGIMVDLLGRIGQLGKAMDIINR 571

Query: 517 LLEGMGPNIWRALLSGCVLH 536
           +    GP++W ALL  C +H
Sbjct: 572 MPIPAGPHVWGALLGACRIH 591



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 119/364 (32%), Positives = 190/364 (52%), Gaps = 2/364 (0%)

Query: 173  HGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYA 232
            H      GL  D  +      MY     +DAA  +F ++       W  M+  F      
Sbjct: 740  HAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRF 799

Query: 233  GDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSI 292
              +L+++ +M +  +  D  A    +   A L DL+RGK +H  +V  G  ++L +  ++
Sbjct: 800  LSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAAL 859

Query: 293  IAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVD 352
            + MY+KCGD++++R VF+++  + LVSWT++ISGY  NG   E L  F  MR       +
Sbjct: 860  VDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIP-N 918

Query: 353  SITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFE 412
             ++++S+L A G L AL      H    + GF     V   ++  YSKCG++DLA  +F+
Sbjct: 919  RVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFD 978

Query: 413  EMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTN 472
            E    +D+V W+ +I  YG++GHG  A+ L+ +M + G  P   T+  +L+AC H+GL  
Sbjct: 979  ETAG-KDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLE 1037

Query: 473  DGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSG 532
            +G + F  M EE  +     +Y C+VDLL RAG LS+A  L   +      +IW +LL  
Sbjct: 1038 EGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGA 1097

Query: 533  CVLH 536
            C +H
Sbjct: 1098 CRIH 1101



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 96/371 (25%), Positives = 184/371 (49%), Gaps = 14/371 (3%)

Query: 104  SDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
            S +FE + NP     N ++ GF  +  F  ++ L++     GL P+       ++ C  L
Sbjct: 772  SIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGL 831

Query: 164  GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
                  ++IH   +  G   D+ V+ +++DMY+   D++AA  +F +M  +D++SWT M+
Sbjct: 832  SDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMI 891

Query: 224  GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
              +    Y  + L  F  MR S +I + V++L+++     LG L++G+  H+ V+  G +
Sbjct: 892  SGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFE 951

Query: 284  SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
             ++ ++ +I+ MYSKCG LD +R +F++   K LV W+A+I+ Y  +G  R+A++ F +M
Sbjct: 952  FDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQM 1011

Query: 344  RQE--KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
             +   +   V    ++S  + SG L   ++  QL  +  E    R  S   C++    + 
Sbjct: 1012 VKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQL--MTEEFVIARKLSNYACMVDLLGRA 1069

Query: 402  GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
            G +  A  + E M    D   W +++           A  +++ +    ++ D   +L  
Sbjct: 1070 GQLSEAVDLIENMPVEPDASIWGSLL----------GACRIHNNLDLAEKIADHLFHLDP 1119

Query: 462  LNACGHAGLTN 472
            ++A  H  L+N
Sbjct: 1120 VHAGYHVLLSN 1130



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 161/341 (47%), Gaps = 26/341 (7%)

Query: 9    SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
            +K    Y    +I  A  +F++IP      W+++I G++ +G    S++ +S MM  GL 
Sbjct: 756  TKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLK 815

Query: 69   PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY------------ 114
            P+ F     L + AGL +L+  + IH  +V  G  +DLF    L + Y            
Sbjct: 816  PDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLV 875

Query: 115  --------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
                    LVS  ++++G+ +N    + +  F+  R SG++PN V++L+V+  C  LG+ 
Sbjct: 876  FDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGAL 935

Query: 167  ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
               E  H   I+ G   D+ V  +++DMYS    LD A  +F E   KD++ W+ M+  +
Sbjct: 936  RKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASY 995

Query: 227  VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
                +   A+ +F +M K+ +    V    ++S  +  G L+ GK ++ Q++        
Sbjct: 996  GIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGK-MYFQLMTEEFVIAR 1054

Query: 287  RLSN--SIIAMYSKCGDLDSSRSVF-NQITEKSLVSWTAII 324
            +LSN   ++ +  + G L  +  +  N   E     W +++
Sbjct: 1055 KLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLL 1095



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 101/213 (47%), Gaps = 2/213 (0%)

Query: 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
           K+ HA++   GLQ + R+      MY     +D++  VF  I       W  +I G+  +
Sbjct: 737 KKTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATD 796

Query: 331 GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV 390
           G    +L  + KM  EK    D       L +   L+ L+    +H      G      V
Sbjct: 797 GRFLSSLELYSKM-MEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFV 855

Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
              L+  Y+KCG+++ A +VF++M  +RD+VSW ++I GY  NG+    L  +  M  +G
Sbjct: 856 DAALVDMYAKCGDIEAARLVFDKMA-VRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSG 914

Query: 451 EVPDSSTYLSILNACGHAGLTNDGLVIFNQMIE 483
            +P+  + LS+L ACG+ G    G    + +I+
Sbjct: 915 VIPNRVSILSVLLACGNLGALRKGEWFHSYVIQ 947



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/258 (30%), Positives = 123/258 (47%), Gaps = 20/258 (7%)

Query: 272 QLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNG 331
           QLH+QV   G+  +   +  + ++Y+KC  L ++R VF++    ++  W + +  Y +  
Sbjct: 22  QLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREK 81

Query: 332 CAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAF---EAGFPRYR 388
              E L  F  M     ++ D+ T+   L A   L  LE+   +HG A    E G   + 
Sbjct: 82  QWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGSDMF- 140

Query: 389 SVQNCLISSYSKCGNVDLAYIVFEEMGFLR-DVVSWNTIIYGYGVNGHGETALALYHKMT 447
            V + L+  YSKCG +  A  VFEE  F R D V W +++ GY  N   E ALAL+ +M 
Sbjct: 141 -VGSALVELYSKCGQMGEALKVFEE--FQRPDTVLWTSMVTGYQQNNDPEEALALFSQMV 197

Query: 448 ETG-EVPDSSTYLSILNACGH-----AGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLL 501
                V D  T +S+++AC       AG    GLVI  +   +  +  S      +++L 
Sbjct: 198 MMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNS------LLNLY 251

Query: 502 ARAGCLSDASGLAGKLLE 519
           A+ GC   A+ L  K+ E
Sbjct: 252 AKTGCEKIAANLFSKMPE 269



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 104/220 (47%), Gaps = 28/220 (12%)

Query: 4    DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
            D +  + L+  Y K G I+ A  +FD++  +++VSW+ +I GY+ NG++ +++  F  M 
Sbjct: 852  DLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMR 911

Query: 64   LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
             SG++PN  +++ VL+A   L  L      H  +++ G E D                  
Sbjct: 912  SSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLD 971

Query: 106  ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                LF+      LV  +A++A +  +   ++A+ LF+    +G+ P+ VT   V+  C 
Sbjct: 972  LARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACS 1031

Query: 162  ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDL 201
              G      L+    +   L+ +  V    L  Y+C++DL
Sbjct: 1032 HSG------LLEEGKMYFQLMTEEFVIARKLSNYACMVDL 1065


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  305 bits (781), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 178/534 (33%), Positives = 291/534 (54%), Gaps = 33/534 (6%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D    SKL+  Y   G ++E   +FD++  + V  W+++++GY+  G   +S+  F  M
Sbjct: 134 VDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRM 193

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIV 122
                               G++ +E AR              LF+ L +  ++S N+++
Sbjct: 194 -----------------RELGIRRVESARK-------------LFDELGDRDVISWNSMI 223

Query: 123 AGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLI 182
           +G+++N L ++ + LF      G+  +  TM++V+ GC   G   L   +HG  IK    
Sbjct: 224 SGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASFG 283

Query: 183 LDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREM 242
            ++++NN +LDMYS   +L++AIQ+F  M  + V+SWT M+  +     +  ++++F EM
Sbjct: 284 KELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEM 343

Query: 243 RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDL 302
            K  I  D   +  ++   A  G L+ GK +H  +    +QS+L +SN+++ MY+KCG +
Sbjct: 344 EKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSM 403

Query: 303 DSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTA 362
             + SVF+++  K +VSW  +I GY +N    EALN F++M  +     +SIT+  IL A
Sbjct: 404 GDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEM--QYNSKPNSITMACILPA 461

Query: 363 SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVS 422
              LAALE   ++HG     GF   R V N L+  Y KCG + LA ++F +M   +D+VS
Sbjct: 462 CASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLF-DMIPEKDLVS 520

Query: 423 WNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMI 482
           W  +I GYG++G+G  A+A +++M  +G  PD  +++SIL AC H+GL ++G   FN M 
Sbjct: 521 WTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMR 580

Query: 483 EENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
               ++P  EHY C+VDLLARAG LS A      +       IW ALL GC ++
Sbjct: 581 NNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIY 634



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/304 (27%), Positives = 150/304 (49%), Gaps = 52/304 (17%)

Query: 256 NLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDL------------- 302
           +++ + A L  ++ G+++H+ +    ++ +  L + ++ MY  CGDL             
Sbjct: 106 SVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANE 165

Query: 303 ------------------------------------DSSRSVFNQITEKSLVSWTAIISG 326
                                               +S+R +F+++ ++ ++SW ++ISG
Sbjct: 166 KVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMISG 225

Query: 327 YVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPR 386
           YV NG + + L+ F +M     ++ D  T+VS++        L +   LHG A +A F +
Sbjct: 226 YVSNGLSEKGLDLFEQMLLLGINT-DLATMVSVVAGCSNTGMLLLGRALHGYAIKASFGK 284

Query: 387 YRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM 446
             ++ NCL+  YSK GN++ A  VFE MG  R VVSW ++I GY   G  + ++ L+H+M
Sbjct: 285 ELTLNNCLLDMYSKSGNLNSAIQVFETMG-ERSVVSWTSMIAGYAREGLSDMSVRLFHEM 343

Query: 447 TETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGC 506
            + G  PD  T  +IL+AC   GL  +G  + N  I+ENK++        ++D+ A+ G 
Sbjct: 344 EKEGISPDIFTITTILHACACTGLLENGKDVHN-YIKENKMQSDLFVSNALMDMYAKCGS 402

Query: 507 LSDA 510
           + DA
Sbjct: 403 MGDA 406



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 117/438 (26%), Positives = 193/438 (44%), Gaps = 62/438 (14%)

Query: 152 TMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM 211
           T  +V++ C  L S      IH +     + +D  + + ++ MY    DL    +IF ++
Sbjct: 103 TYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKV 162

Query: 212 ECKDVISWTRMMGLFVDFEYAGDALKIFREMRK--------SRIICDTVALLNLISVNAI 263
             + V  W  +M  +       ++L +F+ MR+        +R + D +   ++IS N++
Sbjct: 163 ANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSM 222

Query: 264 L-----------------------------------------GDLKRGKQLHAQVVLGGL 282
           +                                         G L  G+ LH   +    
Sbjct: 223 ISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASF 282

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
             EL L+N ++ MYSK G+L+S+  VF  + E+S+VSWT++I+GY + G +  ++  F +
Sbjct: 283 GKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHE 342

Query: 343 MRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
           M +E   S D  T+ +IL A      LE    +H    E        V N L+  Y+KCG
Sbjct: 343 MEKEGI-SPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCG 401

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
           ++  A+ VF EM  ++D+VSWNT+I GY  N     AL L+ +M    + P+S T   IL
Sbjct: 402 SMGDAHSVFSEMQ-VKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNSK-PNSITMACIL 459

Query: 463 NACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMG 522
            AC        G  I   ++  N     +     +VD+  + G L    GLA +LL  M 
Sbjct: 460 PACASLAALERGQEIHGHIL-RNGFSLDRHVANALVDMYLKCGAL----GLA-RLLFDMI 513

Query: 523 PNI----WRALLSGCVLH 536
           P      W  +++G  +H
Sbjct: 514 PEKDLVSWTVMIAGYGMH 531


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  305 bits (781), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 174/557 (31%), Positives = 298/557 (53%), Gaps = 30/557 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           + Y  + L++ Y +SG +  AE +F  + +++ VS++ +I G +  G+  +++  F  M 
Sbjct: 285 ETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMN 344

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF-EGLKNPYLVSCNAIV 122
           L    P+  T+  +L A A +  L   +  H   +K G+ SD+  EG      V C+ I 
Sbjct: 345 LDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIK 404

Query: 123 A--------GFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHG 174
                    G ++N    ++  +F   +  G+VPN  T  ++++ C  LG+  L E IH 
Sbjct: 405 TAHEFFLCYGQLDN--LNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHT 462

Query: 175 LTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGD 234
             +K G   +V V++ ++DMY+    LD A++IFR ++  DV+SWT M+  +   +   +
Sbjct: 463 QVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTE 522

Query: 235 ALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIA 294
           AL +F+EM+   I  D +   + IS  A +  L +G+Q+HAQ  L G   +L + N++++
Sbjct: 523 ALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLSIGNALVS 582

Query: 295 MYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSI 354
           +Y++CG +  + + F+QI  K  VSW +++SG+ Q+G   EALN F +M +   + ++S 
Sbjct: 583 LYARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLE-INSF 641

Query: 355 TLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM 414
           T  S ++A+  +A + I  Q+HG+  + G+     V N LI+ Y+KCG +          
Sbjct: 642 TFGSAVSAAANIANVRIGKQIHGMIRKTGYDSETEVSNALITLYAKCGTI---------- 691

Query: 415 GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDG 474
               D +SWN++I GY  +G G  AL L+  M +   +P+  T++ +L+AC H GL ++G
Sbjct: 692 ----DDISWNSMITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEG 747

Query: 475 LVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCV 534
           +  F  M E + + P  EHY CVVDLL R+G LS A     ++       +WR LLS C 
Sbjct: 748 ISYFRSMSEAHNLVPKPEHYACVVDLLGRSGLLSRAKRFVEEMPIQPDAMVWRTLLSACN 807

Query: 535 LH----VGRFQDAEALR 547
           +H    +G F  +  L 
Sbjct: 808 VHKNIDIGEFAASHLLE 824



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 137/573 (23%), Positives = 238/573 (41%), Gaps = 57/573 (9%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y+  KL+  Y   G +  A N+FDE+P +++  W+ + + +       +    F  M+  
Sbjct: 98  YDGLKLIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTK 157

Query: 66  GLLPNSFTMVGVLVAAAG-LQNLELARSIHGLMVKFGLESD------------------- 105
            +  +      VL   +G   +      IH   +  G ES                    
Sbjct: 158 NVEFDERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSS 217

Query: 106 ---LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA 162
              +FE LK    VS  A+++G   N   ++A+LLF                 V+  C  
Sbjct: 218 AKKVFENLKARDSVSWVAMISGLSQNGYEEEAMLLF--------------CQIVLSACTK 263

Query: 163 LGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
           +      + +HGL +K G   +  V N+++ +YS   +L +A QIF  M  +D +S+  +
Sbjct: 264 VEFFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSL 323

Query: 223 MGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL 282
           +       Y   AL +F++M       D V + +L+S  A +G L  GKQ H+  +  G+
Sbjct: 324 ISGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGM 383

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
            S++ +  S++ +Y KC D+ ++   F             +  G + N    ++   F +
Sbjct: 384 TSDIVVEGSLLDLYVKCSDIKTAHEFF-------------LCYGQLDN--LNKSFQIFTQ 428

Query: 343 MRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
           M+ E     +  T  SIL     L A ++  Q+H    + GF     V + LI  Y+K G
Sbjct: 429 MQIEGI-VPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHG 487

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
            +D A  +F  +    DVVSW  +I GY  +     AL L+ +M + G   D+  + S +
Sbjct: 488 KLDHALKIFRRLK-ENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAI 546

Query: 463 NACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMG 522
           +AC      + G  I  Q                +V L AR G + +A     ++     
Sbjct: 547 SACAGIQALDQGRQIHAQSCLSG-YSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKDN 605

Query: 523 PNIWRALLSGCVLHVGRFQDAEALRSGSQKKGI 555
            + W +L+SG     G F++A  + +   K G+
Sbjct: 606 VS-WNSLVSG-FAQSGYFEEALNIFAQMNKAGL 636


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1047

 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 187/563 (33%), Positives = 291/563 (51%), Gaps = 28/563 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + L+S YF  G +  AE++F  + +++ V+++ +I+G S  G+ EK+M+ F  M 
Sbjct: 305 DTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQ 364

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES-DLFEG-LKNPYL------ 115
           L GL P+S T+  ++VA +    L   + +H    K G  S D  EG L N Y       
Sbjct: 365 LDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIE 424

Query: 116 VSCNAIVAGFINNKLFQQAVLL-----------FNFFRG---SGLVPNAVTMLTVIRGCV 161
            + N  +   + N +    +L+           F  FR      +VPN  T  ++++ C+
Sbjct: 425 TALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCI 484

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            LG   L E IH   IK    L+  V + ++DMY+ L  LD A  I      KDV+SWT 
Sbjct: 485 RLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTT 544

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+  +  + +   AL  FR+M    I  D V L N +S  A L  LK G+Q+HAQ  + G
Sbjct: 545 MIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSG 604

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
             S+L   N+++ +YSKCG+++ +   F Q      ++W A++SG+ Q+G   EAL  F 
Sbjct: 605 FSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFA 664

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +M +E  DS ++ T  S + A+ E A ++   Q+H +  + G+     V N +IS Y+KC
Sbjct: 665 RMNREGIDS-NNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNAIISMYAKC 723

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G++  A   F E+  +++ VSWN +I  Y  +G G  AL  + +M  +   P+  T + +
Sbjct: 724 GSISDAKKQFLELS-MKNEVSWNAMINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGV 782

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L+AC H GL + G+  F  M  E  + P  EHY CVVD+L RAG LS A     ++    
Sbjct: 783 LSACSHIGLVDKGIEYFESMNTEYGLAPKPEHYVCVVDMLTRAGLLSRAKDFILEMPIEP 842

Query: 522 GPNIWRALLSGCVLH----VGRF 540
              +WR LLS CV+H    +G F
Sbjct: 843 DALVWRTLLSACVVHKNMEIGEF 865



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 147/554 (26%), Positives = 249/554 (44%), Gaps = 39/554 (7%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S KLL  Y   G +  A  +FDE+PE+ + +W+ +I   +      K    F  M+   +
Sbjct: 106 SEKLLDFYLFKGDLDGALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENV 165

Query: 68  LPNSFTMVGVLVAA-AGLQNLELARSIHGLMVKFGL----------------------ES 104
            PN  T  GVL A   G    ++   IH  ++  GL                        
Sbjct: 166 TPNEGTFSGVLEACRGGSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRAR 225

Query: 105 DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
            +F+GL      S  A+++G   N+   +A+ LF      G++P      +V+  C  + 
Sbjct: 226 RVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIE 285

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
           S  + E +HGL +KLG   D  V N+++ +Y  L  L +A  IF  M  +D +++  ++ 
Sbjct: 286 SLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLIN 345

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
                 Y   A+++F+ M+   +  D+  L +L+   +  G L  G+QLHA     G  S
Sbjct: 346 GLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFAS 405

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
             ++  +++ +Y+KC D++++ + F +   +++V W  ++  Y   G   +  N F   R
Sbjct: 406 NDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAY---GLLDDLRNSFRIFR 462

Query: 345 QEKTDSV--DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
           Q + + +  +  T  SIL     L  LE+  Q+H    +  F     V + LI  Y+K G
Sbjct: 463 QMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLG 522

Query: 403 NVDLAY-IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
            +D A+ I+    G  +DVVSW T+I GY      + AL  + +M + G   D     + 
Sbjct: 523 KLDTAWDILIRFAG--KDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNA 580

Query: 462 LNACGHAGLTNDGLVIFNQMIEE--NKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519
           ++AC       +G  I  Q      +   P Q     +V L ++ G + +A  LA +  E
Sbjct: 581 VSACAGLQALKEGQQIHAQACVSGFSSDLPFQ---NALVTLYSKCGNIEEAY-LAFEQTE 636

Query: 520 GMGPNI-WRALLSG 532
             G NI W AL+SG
Sbjct: 637 A-GDNIAWNALVSG 649



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 117/476 (24%), Positives = 215/476 (45%), Gaps = 25/476 (5%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           LL+ Y K   I+ A N F E   +NVV W++++  Y +      S + F  M +  ++PN
Sbjct: 413 LLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPN 472

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVK--FGLESDLFEGLKNPY-------------- 114
            +T   +L     L +LEL   IH  ++K  F L + +   L + Y              
Sbjct: 473 QYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILI 532

Query: 115 ------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
                 +VS   ++AG+       +A+  F      G+  + V +   +  C  L +   
Sbjct: 533 RFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKE 592

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
            + IH      G   D+   N+++ +YS   +++ A   F + E  D I+W  ++  F  
Sbjct: 593 GQQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQ 652

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
                +AL++F  M +  I  +     + +   +   ++K+GKQ+HA +   G  SE  +
Sbjct: 653 SGNNEEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEV 712

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
            N+II+MY+KCG +  ++  F +++ K+ VSW A+I+ Y ++G   EAL+ F +M     
Sbjct: 713 CNAIISMYAKCGSISDAKKQFLELSMKNEVSWNAMINAYSKHGFGSEALDSFDQMIHSNV 772

Query: 349 DSVDSITLVSILTASGELAALEICLQ-LHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
              + +TLV +L+A   +  ++  ++    +  E G         C++   ++ G +  A
Sbjct: 773 RP-NHVTLVGVLSACSHIGLVDKGIEYFESMNTEYGLAPKPEHYVCVVDMLTRAGLLSRA 831

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
                EM    D + W T++    V+ + E      H + E  E  DS+TY+ + N
Sbjct: 832 KDFILEMPIEPDALVWRTLLSACVVHKNMEIGEFAAHHLLEL-EPEDSATYVLLSN 886



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 100/333 (30%), Positives = 163/333 (48%), Gaps = 16/333 (4%)

Query: 145 GLVPNAVTMLTVIRGCVAL-GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDA 203
           G+ PN  T+  ++ GC+   GS      +H   +KLG   +  ++  +LD Y    DLD 
Sbjct: 62  GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDG 121

Query: 204 AIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAI 263
           A+++F EM  + + +W +M+        +G    +F  M    +        N  + + +
Sbjct: 122 ALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVT------PNEGTFSGV 175

Query: 264 LGDLKRG-------KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKS 316
           L   + G       +Q+HA+++  GL     + N +I +YS+ G +D +R VF+ +  K 
Sbjct: 176 LEACRGGSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKD 235

Query: 317 LVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLH 376
             SW A+ISG  +N C  EA+  F  M              S+L+A  ++ +LEI  QLH
Sbjct: 236 HSSWVAMISGLSKNECEVEAIRLFCDMYVLGIMPT-PYAFSSVLSACKKIESLEIGEQLH 294

Query: 377 GIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHG 436
           G+  + GF     V N L+S Y   G++  A  +F  M   RD V++NT+I G    G+G
Sbjct: 295 GLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMS-QRDAVTYNTLINGLSQCGYG 353

Query: 437 ETALALYHKMTETGEVPDSSTYLSILNACGHAG 469
           E A+ L+ +M   G  PDS+T  S++ AC   G
Sbjct: 354 EKAMELFKRMQLDGLEPDSNTLASLVVACSSDG 386



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 100/460 (21%), Positives = 195/460 (42%), Gaps = 43/460 (9%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           ++ Y  S L+  Y K GK+  A ++      K+VVSW+ +I GY+   F +K++  F  M
Sbjct: 506 LNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQM 565

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------- 106
           +  G+  +   +   + A AGLQ L+  + IH      G  SDL                
Sbjct: 566 LDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCGNI 625

Query: 107 ------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                 FE  +    ++ NA+V+GF  +   ++A+ +F      G+  N  T  + ++  
Sbjct: 626 EEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAA 685

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
               +    + +H +  K G   +  V N+++ MY+    +  A + F E+  K+ +SW 
Sbjct: 686 SETANMKQGKQVHAVITKTGYDSETEVCNAIISMYAKCGSISDAKKQFLELSMKNEVSWN 745

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG-KQLHAQVVL 279
            M+  +    +  +AL  F +M  S +  + V L+ ++S  + +G + +G +   +    
Sbjct: 746 AMINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIEYFESMNTE 805

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRS-VFNQITEKSLVSWTAIISGYVQNG---CARE 335
            GL  +      ++ M ++ G L  ++  +     E   + W  ++S  V +        
Sbjct: 806 YGLAPKPEHYVCVVDMLTRAGLLSRAKDFILEMPIEPDALVWRTLLSACVVHKNMEIGEF 865

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQL---HGIAFEAGFPRYRSVQN 392
           A +  +++  E  DS   + L ++     +  A ++  Q     G+  E G   +  V+N
Sbjct: 866 AAHHLLELEPE--DSATYVLLSNLYAVCRKWDARDLTRQKMKEKGVKKEPG-QSWIEVKN 922

Query: 393 CLISSYSKCGNVDLAYIVFE----------EMGFLRDVVS 422
            + S Y    N  LA  + E          E+G+++D  S
Sbjct: 923 SIHSFYVGDQNHPLADEIHEYFKDLTKRASEIGYVQDCFS 962


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  304 bits (779), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 179/548 (32%), Positives = 294/548 (53%), Gaps = 26/548 (4%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           LLS + + G + EA  +F ++ E+++ SW++++ GY+  G+ ++++  +  M+  G+ P+
Sbjct: 135 LLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPD 194

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------------FE 108
            +T   VL    GL +L   R +H  ++++G ESD+                      F+
Sbjct: 195 VYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFD 254

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            +     +S NA+++G+  N +  + + LF   R   + P+ +TM +VI  C ALG   L
Sbjct: 255 RMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERL 314

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
              +HG  IK G + +VSVNNS++ M+S +   D A  +F +ME KD++SWT M+  +  
Sbjct: 315 GREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEK 374

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
                 A++ +  M    ++ D + + +++S  A LG L +G  LH      GL S + +
Sbjct: 375 NGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIV 434

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
           +NS+I MYSKC  +D +  VF++I  K+++SWT+II G   N  + EAL  F +M    +
Sbjct: 435 ANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMIL--S 492

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
              +S+TLVS+L+A   + AL    ++H  A   G      + N L+  Y +CG ++ A+
Sbjct: 493 LKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAW 552

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
             F      +DV SWN ++ GY   G G  A+ L+HKM E+   PD  T+ S+L AC  +
Sbjct: 553 NQFNSCE--KDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRS 610

Query: 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRA 528
           G+  DGL  F  M  +  + P+ +HY  VVDLL RAG L DA     K+     P IW A
Sbjct: 611 GMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGA 670

Query: 529 LLSGCVLH 536
           LL+ C ++
Sbjct: 671 LLNACRIY 678



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 134/273 (49%), Gaps = 24/273 (8%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ L+  +   G   EAE +F ++  K++VSW+ +I GY  NG  EK+++ ++ M   G+
Sbjct: 334 NNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGV 393

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES----------------------D 105
           +P+  T+  VL A AGL  L+    +H    + GL S                      +
Sbjct: 394 VPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALE 453

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F  + N  ++S  +I+ G   N    +A+  F     S L PN+VT+++V+  C  +G+
Sbjct: 454 VFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMILS-LKPNSVTLVSVLSACARIGA 512

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
            +  + IH   ++ GL  D  + N++LDMY     ++ A   F   E KDV SW  ++  
Sbjct: 513 LSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNSCE-KDVASWNILLTG 571

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLI 258
           +      G A+++F +M +S +  D +   +L+
Sbjct: 572 YAQQGKGGLAVELFHKMIESDVNPDEITFTSLL 604



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/268 (29%), Positives = 124/268 (46%), Gaps = 14/268 (5%)

Query: 270 GKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQ 329
           G ++H+ V     +  +RL N++++M+ + GDL  +  VF ++ E+ L SW  ++ GY +
Sbjct: 113 GSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAK 172

Query: 330 NGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS 389
            G   EALN + +M        D  T   +L   G L  L    ++H      GF     
Sbjct: 173 AGYFDEALNLYHRMLWVGIRP-DVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVD 231

Query: 390 VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
           V N LI+ Y KCG++  A +VF+ M   RD +SWN +I GY  N      L L+  M E 
Sbjct: 232 VVNALITMYVKCGDIFSARLVFDRMP-RRDRISWNAMISGYFENDVCLEGLRLFFMMREF 290

Query: 450 GEVPDSSTYLSILNAC-----GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARA 504
              PD  T  S+++AC        G    G VI    + E  V  S      ++ + +  
Sbjct: 291 FVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNS------LIQMHSSV 344

Query: 505 GCLSDASGLAGKLLEGMGPNIWRALLSG 532
           GC  +A  +  K +E      W A++SG
Sbjct: 345 GCWDEAEMVFSK-MEFKDLVSWTAMISG 371


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  304 bits (778), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 185/563 (32%), Positives = 286/563 (50%), Gaps = 28/563 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + L+S YF  G +  AE++F  + +++ V+++ +I+G S  G+ EK+M+ F  M 
Sbjct: 322 DTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMH 381

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-LFEGLKNPYLVSCNAIV 122
           L GL P+S T+  ++VA +    L   + +H    K G  S+   EG        C  I 
Sbjct: 382 LDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIE 441

Query: 123 AGF-------INNKLFQQAVLL-----------FNFFRG---SGLVPNAVTMLTVIRGCV 161
                     + N +    +L+           F  FR      +VPN  T  ++++ C+
Sbjct: 442 TALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCI 501

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            LG   L E IH   IK    L+  V + ++DMY+ L  LD A  I      KDV+SWT 
Sbjct: 502 RLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTT 561

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+  +  + +   AL  FR+M    I  D V L N +S  A L  LK G+Q+HAQ  + G
Sbjct: 562 MIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSG 621

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
             S+L   N+++ +YS+CG ++ S   F Q      ++W A++SG+ Q+G   EAL  F+
Sbjct: 622 FSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFV 681

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +M +E  D+ ++ T  S + A+ E A ++   Q+H +  + G+     V N LIS Y+KC
Sbjct: 682 RMNREGIDN-NNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKC 740

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G++  A   F E+   ++ VSWN II  Y  +G G  AL  + +M  +   P+  T + +
Sbjct: 741 GSISDAEKQFLEVS-TKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGV 799

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L+AC H GL + G+  F  M  E  + P  EHY CVVD+L RAG LS A     ++    
Sbjct: 800 LSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKP 859

Query: 522 GPNIWRALLSGCVLH----VGRF 540
              +WR LLS CV+H    +G F
Sbjct: 860 DALVWRTLLSACVVHKNMEIGEF 882



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 147/554 (26%), Positives = 249/554 (44%), Gaps = 39/554 (7%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S KL   Y   G +  A  +FDE+PE+ + +W+ +I   +      +    F  M+   +
Sbjct: 123 SEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENV 182

Query: 68  LPNSFTMVGVLVAA-AGLQNLELARSIHGLMVKFGLESD--------------------- 105
            PN  T  GVL A   G    ++   IH  ++  GL                        
Sbjct: 183 TPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLAR 242

Query: 106 -LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
            +F+GL+     S  A+++G   N+   +A+ LF      G++P      +V+  C  + 
Sbjct: 243 RVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIE 302

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
           S  + E +HGL +KLG   D  V N+++ +Y  L +L +A  IF  M  +D +++  ++ 
Sbjct: 303 SLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLIN 362

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
                 Y   A+++F+ M    +  D+  L +L+   +  G L RG+QLHA     G  S
Sbjct: 363 GLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFAS 422

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
             ++  +++ +Y+KC D++++   F +   +++V W  ++  Y   G   +  N F   R
Sbjct: 423 NNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAY---GLLDDLRNSFRIFR 479

Query: 345 QEKTDSV--DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
           Q + + +  +  T  SIL     L  LE+  Q+H    +  F     V + LI  Y+K G
Sbjct: 480 QMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLG 539

Query: 403 NVDLAY-IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
            +D A+ I+    G  +DVVSW T+I GY      + AL  + +M + G   D     + 
Sbjct: 540 KLDTAWDILIRFAG--KDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNA 597

Query: 462 LNACGHAGLTNDGLVIFNQMIEE--NKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519
           ++AC       +G  I  Q      +   P Q     +V L +R G + + S LA +  E
Sbjct: 598 VSACAGLQALKEGQQIHAQACVSGFSSDLPFQ---NALVTLYSRCGKIEE-SYLAFEQTE 653

Query: 520 GMGPNI-WRALLSG 532
             G NI W AL+SG
Sbjct: 654 A-GDNIAWNALVSG 666



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 118/481 (24%), Positives = 215/481 (44%), Gaps = 35/481 (7%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           LL+ Y K   I+ A + F E   +NVV W++++  Y +      S + F  M +  ++PN
Sbjct: 430 LLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPN 489

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVK--FGLESDLFEGLKNPY-------------- 114
            +T   +L     L +LEL   IH  ++K  F L + +   L + Y              
Sbjct: 490 QYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILI 549

Query: 115 ------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
                 +VS   ++AG+       +A+  F      G+  + V +   +  C  L +   
Sbjct: 550 RFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKE 609

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
            + IH      G   D+   N+++ +YS    ++ +   F + E  D I+W  ++  F  
Sbjct: 610 GQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQ 669

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
                +AL++F  M +  I  +     + +   +   ++K+GKQ+HA +   G  SE  +
Sbjct: 670 SGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEV 729

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
            N++I+MY+KCG +  +   F +++ K+ VSW AII+ Y ++G   EAL+ F +M     
Sbjct: 730 CNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNV 789

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAF------EAGFPRYRSVQNCLISSYSKCG 402
              + +TLV +L+A   +  ++      GIA+      E G         C++   ++ G
Sbjct: 790 RP-NHVTLVGVLSACSHIGLVD-----KGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAG 843

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
            +  A    +EM    D + W T++    V+ + E      H + E  E  DS+TY+ + 
Sbjct: 844 LLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLEL-EPEDSATYVLLS 902

Query: 463 N 463
           N
Sbjct: 903 N 903



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 112/385 (29%), Positives = 184/385 (47%), Gaps = 19/385 (4%)

Query: 93  IHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVT 152
           IHG+  K    + +F  L      S  AI      ++ FQ+  +  +     G+ PN  T
Sbjct: 30  IHGVPRKLKTRT-VFPTLCGTRRASFAAISVYISEDESFQEKRI--DSVENRGIRPNHQT 86

Query: 153 MLTVIRGCVAL-GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM 211
           +  ++ GC+   GS      +H   +KLGL  +  ++  + D Y    DL  A ++F EM
Sbjct: 87  LKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEM 146

Query: 212 ECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG- 270
             + + +W +M+         G+   +F      R++ + V   N  + + +L   + G 
Sbjct: 147 PERTIFTWNKMIKELASRNLIGEVFGLF-----VRMVSENVT-PNEGTFSGVLEACRGGS 200

Query: 271 ------KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAII 324
                 +Q+HA+++  GL+    + N +I +YS+ G +D +R VF+ +  K   SW A+I
Sbjct: 201 VAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMI 260

Query: 325 SGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGF 384
           SG  +N C  EA+  F  M              S+L+A  ++ +LEI  QLHG+  + GF
Sbjct: 261 SGLSKNECEAEAIRLFCDMYVLGIMPT-PYAFSSVLSACKKIESLEIGEQLHGLVLKLGF 319

Query: 385 PRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH 444
                V N L+S Y   GN+  A  +F  M   RD V++NT+I G    G+GE A+ L+ 
Sbjct: 320 SSDTYVCNALVSLYFHLGNLISAEHIFSNMS-QRDAVTYNTLINGLSQCGYGEKAMELFK 378

Query: 445 KMTETGEVPDSSTYLSILNACGHAG 469
           +M   G  PDS+T  S++ AC   G
Sbjct: 379 RMHLDGLEPDSNTLASLVVACSADG 403



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 100/460 (21%), Positives = 196/460 (42%), Gaps = 43/460 (9%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           ++ Y  S L+  Y K GK+  A ++      K+VVSW+ +I GY+   F +K++  F  M
Sbjct: 523 LNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQM 582

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------- 106
           +  G+  +   +   + A AGLQ L+  + IH      G  SDL                
Sbjct: 583 LDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKI 642

Query: 107 ------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                 FE  +    ++ NA+V+GF  +   ++A+ +F      G+  N  T  + ++  
Sbjct: 643 EESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAA 702

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
               +    + +H +  K G   +  V N+++ MY+    +  A + F E+  K+ +SW 
Sbjct: 703 SETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWN 762

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG-KQLHAQVVL 279
            ++  +    +  +AL  F +M  S +  + V L+ ++S  + +G + +G     +    
Sbjct: 763 AIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSE 822

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK-SLVSWTAIISGYVQNG---CARE 335
            GL  +      ++ M ++ G L  ++    ++  K   + W  ++S  V +        
Sbjct: 823 YGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEF 882

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQL---HGIAFEAGFPRYRSVQN 392
           A +  +++  E  DS   + L ++   S +  A ++  Q     G+  E G   +  V+N
Sbjct: 883 AAHHLLELEPE--DSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPG-QSWIEVKN 939

Query: 393 CLISSYSKCGNVDLAYIVFE----------EMGFLRDVVS 422
            + S Y    N  LA  + E          E+G+++D  S
Sbjct: 940 SIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFS 979


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  304 bits (778), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 185/563 (32%), Positives = 286/563 (50%), Gaps = 28/563 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + L+S YF  G +  AE++F  + +++ V+++ +I+G S  G+ EK+M+ F  M 
Sbjct: 282 DTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMH 341

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-LFEGLKNPYLVSCNAIV 122
           L GL P+S T+  ++VA +    L   + +H    K G  S+   EG        C  I 
Sbjct: 342 LDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIE 401

Query: 123 AGF-------INNKLFQQAVLL-----------FNFFRG---SGLVPNAVTMLTVIRGCV 161
                     + N +    +L+           F  FR      +VPN  T  ++++ C+
Sbjct: 402 TALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCI 461

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            LG   L E IH   IK    L+  V + ++DMY+ L  LD A  I      KDV+SWT 
Sbjct: 462 RLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTT 521

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+  +  + +   AL  FR+M    I  D V L N +S  A L  LK G+Q+HAQ  + G
Sbjct: 522 MIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSG 581

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
             S+L   N+++ +YS+CG ++ S   F Q      ++W A++SG+ Q+G   EAL  F+
Sbjct: 582 FSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFV 641

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +M +E  D+ ++ T  S + A+ E A ++   Q+H +  + G+     V N LIS Y+KC
Sbjct: 642 RMNREGIDN-NNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKC 700

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G++  A   F E+   ++ VSWN II  Y  +G G  AL  + +M  +   P+  T + +
Sbjct: 701 GSISDAEKQFLEVS-TKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGV 759

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L+AC H GL + G+  F  M  E  + P  EHY CVVD+L RAG LS A     ++    
Sbjct: 760 LSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKP 819

Query: 522 GPNIWRALLSGCVLH----VGRF 540
              +WR LLS CV+H    +G F
Sbjct: 820 DALVWRTLLSACVVHKNMEIGEF 842



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 145/553 (26%), Positives = 247/553 (44%), Gaps = 37/553 (6%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S KL   Y   G +  A  +FDE+PE+ + +W+ +I   +      +    F  M+   +
Sbjct: 83  SEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENV 142

Query: 68  LPNSFTMVGVLVAA-AGLQNLELARSIHGLMVKFGLESD--------------------- 105
            PN  T  GVL A   G    ++   IH  ++  GL                        
Sbjct: 143 TPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLAR 202

Query: 106 -LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
            +F+GL+     S  A+++G   N+   +A+ LF      G++P      +V+  C  + 
Sbjct: 203 RVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIE 262

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
           S  + E +HGL +KLG   D  V N+++ +Y  L +L +A  IF  M  +D +++  ++ 
Sbjct: 263 SLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLIN 322

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
                 Y   A+++F+ M    +  D+  L +L+   +  G L RG+QLHA     G  S
Sbjct: 323 GLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFAS 382

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
             ++  +++ +Y+KC D++++   F +   +++V W  ++  Y   G   +  N F   R
Sbjct: 383 NNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAY---GLLDDLRNSFRIFR 439

Query: 345 QEKTDSV--DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
           Q + + +  +  T  SIL     L  LE+  Q+H    +  F     V + LI  Y+K G
Sbjct: 440 QMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLG 499

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
            +D A+ +       +DVVSW T+I GY      + AL  + +M + G   D     + +
Sbjct: 500 KLDTAWDILIRFAG-KDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAV 558

Query: 463 NACGHAGLTNDGLVIFNQMIEE--NKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           +AC       +G  I  Q      +   P Q     +V L +R G + + S LA +  E 
Sbjct: 559 SACAGLQALKEGQQIHAQACVSGFSSDLPFQ---NALVTLYSRCGKIEE-SYLAFEQTEA 614

Query: 521 MGPNI-WRALLSG 532
            G NI W AL+SG
Sbjct: 615 -GDNIAWNALVSG 626



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 118/481 (24%), Positives = 215/481 (44%), Gaps = 35/481 (7%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           LL+ Y K   I+ A + F E   +NVV W++++  Y +      S + F  M +  ++PN
Sbjct: 390 LLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPN 449

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVK--FGLESDLFEGLKNPY-------------- 114
            +T   +L     L +LEL   IH  ++K  F L + +   L + Y              
Sbjct: 450 QYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILI 509

Query: 115 ------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
                 +VS   ++AG+       +A+  F      G+  + V +   +  C  L +   
Sbjct: 510 RFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKE 569

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
            + IH      G   D+   N+++ +YS    ++ +   F + E  D I+W  ++  F  
Sbjct: 570 GQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQ 629

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
                +AL++F  M +  I  +     + +   +   ++K+GKQ+HA +   G  SE  +
Sbjct: 630 SGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEV 689

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
            N++I+MY+KCG +  +   F +++ K+ VSW AII+ Y ++G   EAL+ F +M     
Sbjct: 690 CNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNV 749

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAF------EAGFPRYRSVQNCLISSYSKCG 402
              + +TLV +L+A   +  ++      GIA+      E G         C++   ++ G
Sbjct: 750 RP-NHVTLVGVLSACSHIGLVD-----KGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAG 803

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
            +  A    +EM    D + W T++    V+ + E      H + E  E  DS+TY+ + 
Sbjct: 804 LLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLEL-EPEDSATYVLLS 862

Query: 463 N 463
           N
Sbjct: 863 N 863



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 101/333 (30%), Positives = 165/333 (49%), Gaps = 16/333 (4%)

Query: 145 GLVPNAVTMLTVIRGCVAL-GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDA 203
           G+ PN  T+  ++ GC+   GS      +H   +KLGL  +  ++  + D Y    DL  
Sbjct: 39  GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYG 98

Query: 204 AIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAI 263
           A ++F EM  + + +W +M+         G+   +F      R++ + V   N  + + +
Sbjct: 99  AFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLF-----VRMVSENVT-PNEGTFSGV 152

Query: 264 LGDLKRG-------KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKS 316
           L   + G       +Q+HA+++  GL+    + N +I +YS+ G +D +R VF+ +  K 
Sbjct: 153 LEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKD 212

Query: 317 LVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLH 376
             SW A+ISG  +N C  EA+  F  M              S+L+A  ++ +LEI  QLH
Sbjct: 213 HSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPT-PYAFSSVLSACKKIESLEIGEQLH 271

Query: 377 GIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHG 436
           G+  + GF     V N L+S Y   GN+  A  +F  M   RD V++NT+I G    G+G
Sbjct: 272 GLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMS-QRDAVTYNTLINGLSQCGYG 330

Query: 437 ETALALYHKMTETGEVPDSSTYLSILNACGHAG 469
           E A+ L+ +M   G  PDS+T  S++ AC   G
Sbjct: 331 EKAMELFKRMHLDGLEPDSNTLASLVVACSADG 363



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 102/465 (21%), Positives = 197/465 (42%), Gaps = 53/465 (11%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           ++ Y  S L+  Y K GK+  A ++      K+VVSW+ +I GY+   F +K++  F  M
Sbjct: 483 LNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQM 542

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------- 106
           +  G+  +   +   + A AGLQ L+  + IH      G  SDL                
Sbjct: 543 LDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKI 602

Query: 107 ------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                 FE  +    ++ NA+V+GF  +   ++A+ +F      G+  N  T  + ++  
Sbjct: 603 EESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAA 662

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
               +    + +H +  K G   +  V N+++ MY+    +  A + F E+  K+ +SW 
Sbjct: 663 SETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWN 722

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++  +    +  +AL  F +M  S +  + V L+ ++S  + +G + +G          
Sbjct: 723 AIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGI-----AYFE 777

Query: 281 GLQSELRLSNS------IIAMYSKCGDLDSSRSVFNQITEK-SLVSWTAIISGYVQNG-- 331
            + SE  LS        ++ M ++ G L  ++    ++  K   + W  ++S  V +   
Sbjct: 778 SMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNM 837

Query: 332 -CAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQL---HGIAFEAGFPRY 387
                A +  +++  E  DS   + L ++   S +  A ++  Q     G+  E G   +
Sbjct: 838 EIGEFAAHHLLELEPE--DSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPG-QSW 894

Query: 388 RSVQNCLISSYSKCGNVDLAYIVFE----------EMGFLRDVVS 422
             V+N + S Y    N  LA  + E          E+G+++D  S
Sbjct: 895 IEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFS 939


>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
 gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
          Length = 1175

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 179/565 (31%), Positives = 294/565 (52%), Gaps = 28/565 (4%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C + +  + +++ Y + G  + AE +F ++P ++ V+++ +I G++  G  E +++ F  
Sbjct: 175 CSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEE 234

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-LFEGLKNPYLVSCNA 120
           M  SGL P+  T+  +L A A L +L+    +H  + K G+ SD + EG      V C  
Sbjct: 235 MQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGD 294

Query: 121 I-VAGFINNKLFQQAVLLFNFF--------------------RGSGLVPNAVTMLTVIRG 159
           +  A  I N   +  V+L+N                      + +G+ PN  T   ++R 
Sbjct: 295 VETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRT 354

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C       L E IH L++K G   D+ V+  ++DMYS    L+ A ++   ++ KDV+SW
Sbjct: 355 CTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSW 414

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           T M+  +V  E   DAL  F+EM+K  I  D + L + IS  A +  +++G Q+HA++ +
Sbjct: 415 TSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYV 474

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G   ++ + N+++ +Y++CG +  + S F +I  K  ++W  ++SG+ Q+G   EAL  
Sbjct: 475 SGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKV 534

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           F++M Q      +  T VS L+AS  LA ++   Q+H    + G      V N LIS Y 
Sbjct: 535 FMRMDQSGVKH-NVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYG 593

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           KCG+ + A + F EM   R+ VSWNTII     +G G  AL L+ +M + G  P+  T++
Sbjct: 594 KCGSFEDAKMEFSEMS-ERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFI 652

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519
            +L AC H GL  +GL  F  M +E  ++P  +HY CV+D+  RAG L  A     ++  
Sbjct: 653 GVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPI 712

Query: 520 GMGPNIWRALLSGCVLH----VGRF 540
                +WR LLS C +H    VG F
Sbjct: 713 AADAMVWRTLLSACKVHKNIEVGEF 737



 Score =  211 bits (537), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 148/576 (25%), Positives = 283/576 (49%), Gaps = 28/576 (4%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+  Y K+G +  A  +F+E+  ++ VSW  ++ GY+ NG  E+++  +  M  +G++P 
Sbjct: 83  LIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPT 142

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--------------------- 109
            + +  VL +    +     R IH    K G  S++F G                     
Sbjct: 143 PYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFC 202

Query: 110 -LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            + +   V+ N +++G       + A+ +F   + SGL P+ VT+ +++  C +LG    
Sbjct: 203 DMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQK 262

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
              +H    K G+  D  +  S+LD+Y    D++ A+ IF   +  +V+ W  M+  F  
Sbjct: 263 GTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQ 322

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
                 + ++F +M+ + I  +      ++       ++  G+Q+H+  V  G +S++ +
Sbjct: 323 INDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYV 382

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
           S  +I MYSK G L+ +R V   + EK +VSWT++I+GYVQ+ C ++AL  F +M Q+  
Sbjct: 383 SGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEM-QKCG 441

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
              D+I L S ++    + A+   LQ+H   + +G+    S+ N L++ Y++CG +  A+
Sbjct: 442 IWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAF 501

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
             FEE+   +D ++WN ++ G+  +G  E AL ++ +M ++G   +  T++S L+A  + 
Sbjct: 502 SSFEEIEH-KDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANL 560

Query: 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRA 528
                G  I  ++I+      + E    ++ L  + G   DA     ++ E      W  
Sbjct: 561 AEIKQGKQIHARVIKTGHSFET-EVGNALISLYGKCGSFEDAKMEFSEMSE-RNEVSWNT 618

Query: 529 LLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFL 564
           +++ C  H GR  +A  L    +K+G IK   ++F+
Sbjct: 619 IITSCSQH-GRGLEALDLFDQMKKEG-IKPNDVTFI 652



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 82/267 (30%), Positives = 132/267 (49%), Gaps = 7/267 (2%)

Query: 211 MECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG 270
           M  +   S  R +  F+  E     L +F +  K+R       L    ++ A  G+ +R 
Sbjct: 1   MTRRGAASLGRTLAGFLAHEDPAKVLSLFAD--KARQHGGLGPLDFACALRACRGNGRRW 58

Query: 271 K---QLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGY 327
           +   ++HA+ V  GL     + N +I +YSK G +  +R VF +++ +  VSW A++SGY
Sbjct: 59  QVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGY 118

Query: 328 VQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRY 387
            QNG   EAL  + +M +        + L S+L++  +         +H   ++ GF   
Sbjct: 119 AQNGLGEEALGLYRQMHRAGVVPTPYV-LSSVLSSCTKAELFAQGRLIHAQGYKHGFCSE 177

Query: 388 RSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMT 447
             V N +I+ Y +CG+  LA  VF +M   RD V++NT+I G+   GHGE AL ++ +M 
Sbjct: 178 IFVGNAVITLYLRCGSFRLAERVFCDMPH-RDTVTFNTLISGHAQCGHGEHALEIFEEMQ 236

Query: 448 ETGEVPDSSTYLSILNACGHAGLTNDG 474
            +G  PD  T  S+L AC   G    G
Sbjct: 237 FSGLSPDCVTISSLLAACASLGDLQKG 263



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 46/111 (41%), Positives = 59/111 (53%), Gaps = 1/111 (0%)

Query: 370 EICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYG 429
           ++  ++H  A   G  +YR V N LI  YSK G V  A  VFEE+   RD VSW  ++ G
Sbjct: 59  QVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELS-ARDNVSWVAMLSG 117

Query: 430 YGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQ 480
           Y  NG GE AL LY +M   G VP      S+L++C  A L   G +I  Q
Sbjct: 118 YAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQ 168


>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1176

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 179/565 (31%), Positives = 294/565 (52%), Gaps = 28/565 (4%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C + +  + +++ Y + G  + AE +F ++P ++ V+++ +I G++  G  E +++ F  
Sbjct: 175 CSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEE 234

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-LFEGLKNPYLVSCNA 120
           M  SGL P+  T+  +L A A L +L+    +H  + K G+ SD + EG      V C  
Sbjct: 235 MQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGD 294

Query: 121 I-VAGFINNKLFQQAVLLFNFF--------------------RGSGLVPNAVTMLTVIRG 159
           +  A  I N   +  V+L+N                      + +G+ PN  T   ++R 
Sbjct: 295 VETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRT 354

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C       L E IH L++K G   D+ V+  ++DMYS    L+ A ++   ++ KDV+SW
Sbjct: 355 CTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSW 414

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           T M+  +V  E   DAL  F+EM+K  I  D + L + IS  A +  +++G Q+HA++ +
Sbjct: 415 TSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYV 474

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G   ++ + N+++ +Y++CG +  + S F +I  K  ++W  ++SG+ Q+G   EAL  
Sbjct: 475 SGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKV 534

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           F++M Q      +  T VS L+AS  LA ++   Q+H    + G      V N LIS Y 
Sbjct: 535 FMRMDQSGVKH-NVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYG 593

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           KCG+ + A + F EM   R+ VSWNTII     +G G  AL L+ +M + G  P+  T++
Sbjct: 594 KCGSFEDAKMEFSEMS-ERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFI 652

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519
            +L AC H GL  +GL  F  M +E  ++P  +HY CV+D+  RAG L  A     ++  
Sbjct: 653 GVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPI 712

Query: 520 GMGPNIWRALLSGCVLH----VGRF 540
                +WR LLS C +H    VG F
Sbjct: 713 AADAMVWRTLLSACKVHKNIEVGEF 737



 Score =  211 bits (537), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 148/576 (25%), Positives = 283/576 (49%), Gaps = 28/576 (4%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+  Y K+G +  A  +F+E+  ++ VSW  ++ GY+ NG  E+++  +  M  +G++P 
Sbjct: 83  LIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPT 142

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--------------------- 109
            + +  VL +    +     R IH    K G  S++F G                     
Sbjct: 143 PYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFC 202

Query: 110 -LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            + +   V+ N +++G       + A+ +F   + SGL P+ VT+ +++  C +LG    
Sbjct: 203 DMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQK 262

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
              +H    K G+  D  +  S+LD+Y    D++ A+ IF   +  +V+ W  M+  F  
Sbjct: 263 GTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQ 322

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
                 + ++F +M+ + I  +      ++       ++  G+Q+H+  V  G +S++ +
Sbjct: 323 INDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYV 382

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
           S  +I MYSK G L+ +R V   + EK +VSWT++I+GYVQ+ C ++AL  F +M Q+  
Sbjct: 383 SGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEM-QKCG 441

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
              D+I L S ++    + A+   LQ+H   + +G+    S+ N L++ Y++CG +  A+
Sbjct: 442 IWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAF 501

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
             FEE+   +D ++WN ++ G+  +G  E AL ++ +M ++G   +  T++S L+A  + 
Sbjct: 502 SSFEEIEH-KDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANL 560

Query: 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRA 528
                G  I  ++I+      + E    ++ L  + G   DA     ++ E      W  
Sbjct: 561 AEIKQGKQIHARVIKTGHSFET-EVGNALISLYGKCGSFEDAKMEFSEMSE-RNEVSWNT 618

Query: 529 LLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFL 564
           +++ C  H GR  +A  L    +K+G IK   ++F+
Sbjct: 619 IITSCSQH-GRGLEALDLFDQMKKEG-IKPNDVTFI 652



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 82/267 (30%), Positives = 132/267 (49%), Gaps = 7/267 (2%)

Query: 211 MECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG 270
           M  +   S  R +  F+  E     L +F +  K+R       L    ++ A  G+ +R 
Sbjct: 1   MTRRGAASLGRTLAGFLAHEDPAKVLSLFAD--KARQHGGLGPLDFACALRACRGNGRRW 58

Query: 271 K---QLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGY 327
           +   ++HA+ V  GL     + N +I +YSK G +  +R VF +++ +  VSW A++SGY
Sbjct: 59  QVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGY 118

Query: 328 VQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRY 387
            QNG   EAL  + +M +        + L S+L++  +         +H   ++ GF   
Sbjct: 119 AQNGLGEEALGLYRQMHRAGVVPTPYV-LSSVLSSCTKAELFAQGRLIHAQGYKHGFCSE 177

Query: 388 RSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMT 447
             V N +I+ Y +CG+  LA  VF +M   RD V++NT+I G+   GHGE AL ++ +M 
Sbjct: 178 IFVGNAVITLYLRCGSFRLAERVFCDMPH-RDTVTFNTLISGHAQCGHGEHALEIFEEMQ 236

Query: 448 ETGEVPDSSTYLSILNACGHAGLTNDG 474
            +G  PD  T  S+L AC   G    G
Sbjct: 237 FSGLSPDCVTISSLLAACASLGDLQKG 263



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 46/111 (41%), Positives = 59/111 (53%), Gaps = 1/111 (0%)

Query: 370 EICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYG 429
           ++  ++H  A   G  +YR V N LI  YSK G V  A  VFEE+   RD VSW  ++ G
Sbjct: 59  QVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELS-ARDNVSWVAMLSG 117

Query: 430 YGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQ 480
           Y  NG GE AL LY +M   G VP      S+L++C  A L   G +I  Q
Sbjct: 118 YAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQ 168


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 179/548 (32%), Positives = 294/548 (53%), Gaps = 26/548 (4%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           LLS + + G + EA  +F ++ E+++ SW++++ GY+  G+ ++++  +  M+  G+ P+
Sbjct: 135 LLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPD 194

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------------FE 108
            +T   VL    GL +L   R +H  ++++G ESD+                      F+
Sbjct: 195 VYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFD 254

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            +     +S NA+++G+  N +  + + LF   R   + P+ +TM +VI  C ALG   L
Sbjct: 255 RMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERL 314

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
              +HG  IK G + +VSVNNS++ M+S +   D A  +F +ME KD++SWT M+  +  
Sbjct: 315 GREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEK 374

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
                 A++ +  M    ++ D + + +++S  A LG L +G  LH      GL S + +
Sbjct: 375 NGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIV 434

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
           +NS+I MYSKC  +D +  VF++I  K+++SWT+II G   N  + EAL  F +M    +
Sbjct: 435 ANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMIL--S 492

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
              +S+TLVS+L+A   + AL    ++H  A   G      + N L+  Y +CG ++ A+
Sbjct: 493 LKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAW 552

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
             F      +DV SWN ++ GY   G G  A+ L+HKM E+   PD  T+ S+L AC  +
Sbjct: 553 NQFNSCE--KDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRS 610

Query: 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRA 528
           G+  DGL  F  M  +  + P+ +HY  VVDLL RAG L DA     K+     P IW A
Sbjct: 611 GMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGA 670

Query: 529 LLSGCVLH 536
           LL+ C ++
Sbjct: 671 LLNACRIY 678



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 80/268 (29%), Positives = 124/268 (46%), Gaps = 14/268 (5%)

Query: 270 GKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQ 329
           G ++H+ V     +  +RL N++++M+ + GDL  +  VF ++ E+ L SW  ++ GY +
Sbjct: 113 GSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAK 172

Query: 330 NGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS 389
            G   EALN + +M        D  T   +L   G L  L    ++H      GF     
Sbjct: 173 AGYFDEALNLYHRMLWVGIRP-DVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVD 231

Query: 390 VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
           V N LI+ Y KCG++  A +VF+ M   RD +SWN +I GY  N      L L+  M E 
Sbjct: 232 VVNALITMYVKCGDIFSARLVFDRMP-RRDRISWNAMISGYFENDVCLEGLRLFFMMREF 290

Query: 450 GEVPDSSTYLSILNAC-----GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARA 504
              PD  T  S+++AC        G    G VI    + E  V  S      ++ + +  
Sbjct: 291 FVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNS------LIQMHSSV 344

Query: 505 GCLSDASGLAGKLLEGMGPNIWRALLSG 532
           GC  +A  +  K +E      W A++SG
Sbjct: 345 GCWDEAEMVFSK-MEFKDLVSWTAMISG 371



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 134/273 (49%), Gaps = 24/273 (8%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ L+  +   G   EAE +F ++  K++VSW+ +I GY  NG  EK+++ ++ M   G+
Sbjct: 334 NNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGV 393

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES----------------------D 105
           +P+  T+  VL A AGL  L+    +H    + GL S                      +
Sbjct: 394 VPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALE 453

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F  + N  ++S  +I+ G   N    +A+  F     S L PN+VT+++V+  C  +G+
Sbjct: 454 VFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMILS-LKPNSVTLVSVLSACARIGA 512

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
            +  + IH   ++ GL  D  + N++LDMY     ++ A   F   E KDV SW  ++  
Sbjct: 513 LSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNSCE-KDVASWNILLTG 571

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLI 258
           +      G A+++F +M +S +  D +   +L+
Sbjct: 572 YAQQGKGGLAVELFHKMIESDVNPDEITFTSLL 604


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  301 bits (771), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 183/550 (33%), Positives = 285/550 (51%), Gaps = 33/550 (6%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           +LS Y  SG +  A++LF   P +N  +W+I++  ++  G    ++  F  M+  G++P+
Sbjct: 80  ILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPD 139

Query: 71  SFTMVGVLVAAAGLQNLE--LARSIHGLMVKFGLESDLF-----------EGL------- 110
             T+  VL       NL      S+H   +KFGL++ +F            GL       
Sbjct: 140 RVTVTTVL-------NLPGCTVPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRV 192

Query: 111 ----KNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
                +   V+ NA++ G     L  QA+ LF   R +G+     T  +++     +   
Sbjct: 193 FLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHL 252

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
            L   +H L ++   +L+V VNNS+LD YS    LD   ++F EM  +D +S+  ++  +
Sbjct: 253 LLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAY 312

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
              + A   L++FREM+K       +    ++SV   L D+  GKQ+HAQ+VL GL SE 
Sbjct: 313 AWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASED 372

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            L N++I MYSKCG LD+++S F+  +EKS +SWTA+I+GYVQNG   EAL  F  MR+ 
Sbjct: 373 LLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRA 432

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
                D  T  SI+ AS  LA + +  QLH     +G+       + L+  Y+KCG +D 
Sbjct: 433 GLRP-DRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDE 491

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           A   F+EM   R+ +SWN +I  Y   G  + A+ ++  M   G  PDS T+LS+L AC 
Sbjct: 492 ALRTFDEMP-ERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACS 550

Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIW 526
           H GL ++ +  F+ M  +  + P +EHY CV+D L R GC S    +  ++     P IW
Sbjct: 551 HNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIW 610

Query: 527 RALLSGCVLH 536
            ++L  C +H
Sbjct: 611 TSILHSCRIH 620



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 128/503 (25%), Positives = 236/503 (46%), Gaps = 25/503 (4%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           LL  Y K G +  A  +F E+ +K+ V+++ ++ G S  G H ++++ F+ M  +G+   
Sbjct: 176 LLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPAT 235

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVK---------------FGLESD-------LFE 108
            FT   +L  AAG+ +L L   +H L+++               F  + D       LF+
Sbjct: 236 HFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFD 295

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            +     VS N I+A +  N+     + LF   +  G     +   T++    +L    +
Sbjct: 296 EMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHI 355

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
            + IH   + LGL  +  + N+++DMYS    LDAA   F     K  ISWT ++  +V 
Sbjct: 356 GKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQ 415

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
                +AL++F +MR++ +  D     ++I  ++ L  +  G+QLH+ ++  G +S +  
Sbjct: 416 NGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFS 475

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
            + ++ MY+KCG LD +   F+++ E++ +SW A+IS Y   G A+ A+  F  M     
Sbjct: 476 GSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGF 535

Query: 349 DSVDSITLVSILTASGELAALEICLQ-LHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
           +  DS+T +S+L A       + C++  H +  +     ++    C+I +  + G     
Sbjct: 536 NP-DSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQV 594

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
             +  EM F  D + W +I++   ++G+ E A     K+    E  D++ Y+ + N    
Sbjct: 595 QKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGM-EPTDATPYVILSNIYAR 653

Query: 468 AGLTNDGLVIFNQMIEENKVKPS 490
           AG   D   +   M +    K S
Sbjct: 654 AGQWEDAACVKKIMRDRGVRKES 676



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 92/407 (22%), Positives = 182/407 (44%), Gaps = 38/407 (9%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           LL  Y K   + +   LFDE+PE++ VS++++I  Y+ N      ++ F  M   G    
Sbjct: 277 LLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQ 336

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------LFEGLKNPY- 114
                 +L  A  L ++ + + IH  +V  GL S+               + +  K+ + 
Sbjct: 337 VLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFS 396

Query: 115 ------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
                  +S  A++ G++ N   ++A+ LF+  R +GL P+  T  ++I+   +L    L
Sbjct: 397 NRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGL 456

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
              +H   I+ G    V   + ++DMY+    LD A++ F EM  ++ ISW  ++  +  
Sbjct: 457 GRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAH 516

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLI---SVNAILGD-LKRGKQLHAQVVLGGLQS 284
           +  A +A+K+F  M       D+V  L+++   S N +  + +K    +  Q  +   + 
Sbjct: 517 YGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKE 576

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKS-LVSWTAIISGYVQNG---CAREALNQF 340
                  +I    + G     + +  ++  K+  + WT+I+     +G    AR A ++ 
Sbjct: 577 HY---ACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKL 633

Query: 341 IKMRQEKTDSVDSITLVSILTASGEL---AALEICLQLHGIAFEAGF 384
             M  E TD+   + L +I   +G+    A ++  ++  G+  E+G+
Sbjct: 634 FGM--EPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGY 678


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  301 bits (771), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 184/550 (33%), Positives = 287/550 (52%), Gaps = 33/550 (6%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           +LS Y  SG +  A++LF   P +N  +W+I++  ++  G    ++  F  M+  G++P+
Sbjct: 80  ILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPD 139

Query: 71  SFTMVGVLVAAAGLQNLE--LARSIHGLMVKFGLESDLF-----------EGL----KNP 113
             T+  VL       NL      S+H   +KFGL++ +F            GL    +  
Sbjct: 140 RVTVTTVL-------NLPGCTVPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRV 192

Query: 114 YL-------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           +L       V+ NA++ G     L  QA+ LF   R +G+     T  +++     +   
Sbjct: 193 FLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHL 252

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
            L   +H L ++   +L+V VNNS+LD YS    LD   ++F EM  +D +S+  ++  +
Sbjct: 253 LLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAY 312

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
              + A   L++FREM+K       +    ++SV   L D+  GKQ+HAQ+VL GL SE 
Sbjct: 313 AWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASED 372

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            L N++I MYSKCG LD+++S F+  +EKS +SWTA+I+GYVQNG   EAL  F  MR+ 
Sbjct: 373 LLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRA 432

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
                D  T  SI+ AS  LA + +  QLH     +G+       + L+  Y+KCG +D 
Sbjct: 433 GLRP-DRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDE 491

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           A   F+EM   R+ +SWN +I  Y   G  + A+ ++  M   G  PDS T+LS+L AC 
Sbjct: 492 ALRTFDEMP-ERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACS 550

Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIW 526
           H GL ++ +  F+ M  +  + P +EHY CV+D L R GC S    +  ++     P IW
Sbjct: 551 HNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIW 610

Query: 527 RALLSGCVLH 536
            ++L  C +H
Sbjct: 611 TSILHSCRIH 620



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 128/503 (25%), Positives = 236/503 (46%), Gaps = 25/503 (4%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           LL  Y K G +  A  +F E+ +K+ V+++ ++ G S  G H ++++ F+ M  +G+   
Sbjct: 176 LLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPAT 235

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVK---------------FGLESD-------LFE 108
            FT   +L  AAG+ +L L   +H L+++               F  + D       LF+
Sbjct: 236 HFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFD 295

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            +     VS N I+A +  N+     + LF   +  G     +   T++    +L    +
Sbjct: 296 EMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHI 355

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
            + IH   + LGL  +  + N+++DMYS    LDAA   F     K  ISWT ++  +V 
Sbjct: 356 GKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQ 415

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
                +AL++F +MR++ +  D     ++I  ++ L  +  G+QLH+ ++  G +S +  
Sbjct: 416 NGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFS 475

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
            + ++ MY+KCG LD +   F+++ E++ +SW A+IS Y   G A+ A+  F  M     
Sbjct: 476 GSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGF 535

Query: 349 DSVDSITLVSILTASGELAALEICLQ-LHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
           +  DS+T +S+L A       + C++  H +  +     ++    C+I +  + G     
Sbjct: 536 NP-DSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQV 594

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
             +  EM F  D + W +I++   ++G+ E A     K+    E  D++ Y+ + N    
Sbjct: 595 QKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGM-EPTDATPYVILSNIYAR 653

Query: 468 AGLTNDGLVIFNQMIEENKVKPS 490
           AG   D   +   M +    K S
Sbjct: 654 AGQWEDAACVKKIMRDRGVRKES 676



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 92/410 (22%), Positives = 184/410 (44%), Gaps = 38/410 (9%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ LL  Y K   + +   LFDE+PE++ VS++++I  Y+ N      ++ F  M   G 
Sbjct: 274 NNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGF 333

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------LFEGLKN 112
                    +L  A  L ++ + + IH  +V  GL S+               + +  K+
Sbjct: 334 DRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKS 393

Query: 113 PY-------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
            +        +S  A++ G++ N   ++A+ LF+  R +GL P+  T  ++I+   +L  
Sbjct: 394 NFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAM 453

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
             L   +H   I+ G    V   + ++DMY+    LD A++ F EM  ++ ISW  ++  
Sbjct: 454 IGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISA 513

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLI---SVNAILGD-LKRGKQLHAQVVLGG 281
           +  +  A +A+K+F  M       D+V  L+++   S N +  + +K    +  Q  +  
Sbjct: 514 YAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISP 573

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKS-LVSWTAIISGYVQNG---CAREAL 337
            +        +I    + G     + +  ++  K+  + WT+I+     +G    AR A 
Sbjct: 574 WKEHY---ACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAA 630

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGEL---AALEICLQLHGIAFEAGF 384
           ++   M  E TD+   + L +I   +G+    A ++  ++  G+  E+G+
Sbjct: 631 DKLFGM--EPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGY 678


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  301 bits (770), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 190/652 (29%), Positives = 310/652 (47%), Gaps = 92/652 (14%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIH--------------------- 44
           Y +++LL+   KSG++ +A  LFD++P+K+  SW+ +I                      
Sbjct: 66  YQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCK 125

Query: 45  ----------GYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIH 94
                     GY   G   ++   F  M L G   + FT+  VL   + L  ++    IH
Sbjct: 126 SSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIH 185

Query: 95  GLMVKFGLESDLF--EGLKNPYL----------------------VSCNAIVAGFINNKL 130
           G +VK G E ++F   GL + Y                       V   A+V G+  N  
Sbjct: 186 GFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGD 245

Query: 131 FQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNS 190
             +AV  F +    G+  N  T  T++  C ++ +R   E +HG  +K G   +V V ++
Sbjct: 246 GYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSA 305

Query: 191 VLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICD 250
           ++DMY+   DL  A  +   ME  DV+SW  +M  FV      +AL++F+ M    +  D
Sbjct: 306 LVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKID 365

Query: 251 TVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFN 310
                ++++   ++G +   K +H  ++  G ++   +SN+++ MY+K GD+D + +VF 
Sbjct: 366 DYTFPSVLNC-CVVGSIN-PKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFE 423

Query: 311 QITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALE 370
           ++ EK ++SWT++++GY QN    E+L  F  MR    +  D   + SIL+A  EL  LE
Sbjct: 424 KMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNP-DQFIVASILSACAELTLLE 482

Query: 371 ICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGY 430
              Q+H    ++G    +SV N L++ Y+KCG +D A  +F  M  ++DV++W  II GY
Sbjct: 483 FGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQ-VKDVITWTAIIVGY 541

Query: 431 GVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPS 490
             NG G  +L  Y  M  +G  PD  T++ +L AC HAGL ++G   F QM +   +KP 
Sbjct: 542 AQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPG 601

Query: 491 QEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVG------------ 538
            EHY C++DL  R+G L +A  L  ++       +W++LLS C +H              
Sbjct: 602 PEHYACMIDLFGRSGKLDEAKQLLDQMDVKPDATVWKSLLSACRVHENLELAERAATNLF 661

Query: 539 ---------------------RFQDAEALRSGSQKKGIIKIPGISFLNSTSR 569
                                ++ D   +R   + KGI+K PG S+L   SR
Sbjct: 662 ELEPMNAMPYVMLSNMYSASRKWNDVAKIRKLMKSKGIVKEPGCSWLEINSR 713


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 178/572 (31%), Positives = 305/572 (53%), Gaps = 29/572 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L++ + K G I +A  +FD +P +++V+W+ +I G + +G  +++   F  M 
Sbjct: 245 DLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRME 304

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG-------------- 109
             G+ P+    V +L A    + LE  + +H  M + G +++++ G              
Sbjct: 305 EEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSME 364

Query: 110 --------LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                   +K   +VS  A++AGF  +    +A L FN    SG+ PN VT ++++  C 
Sbjct: 365 DALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACS 424

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
           +  +    + I    I+ G   D  V  ++L MY+    L  A ++F ++  ++V++W  
Sbjct: 425 SPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNA 484

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+  +V  E   +AL  F+ + K  I  ++    ++++V      L+ GK +H  ++  G
Sbjct: 485 MITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAG 544

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           L+S+L +SN++++M+  CGDL S++++FN + ++ LVSW  II+G+VQ+G  + A + F 
Sbjct: 545 LESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYF- 603

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           KM QE     D IT   +L A     AL    +LH +  EA F     V   LIS Y+KC
Sbjct: 604 KMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKC 663

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G+++ A+ VF ++   ++V SW ++I GY  +G G+ AL L+++M + G  PD  T++  
Sbjct: 664 GSIEDAHQVFHKLP-KKNVYSWTSMITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGA 722

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L+AC HAGL  +GL  F  M E N ++P  EHYGC+VDL  RAG L++A     K+    
Sbjct: 723 LSACAHAGLIEEGLHHFQSMKEFN-IEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEP 781

Query: 522 GPNIWRALLSGCVLHVGRFQDAEALRSGSQKK 553
              +W ALL  C +H+    + E     +QKK
Sbjct: 782 DSRVWGALLGACQVHL----NVELAEKAAQKK 809



 Score =  240 bits (613), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 159/589 (26%), Positives = 299/589 (50%), Gaps = 32/589 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L++ Y K G    A+ +FD++ EK+V SW++++ GY  +G +E++ K    M+
Sbjct: 144 DIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMV 203

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG-------------- 109
              + P+  T V +L A A  +N++  R ++ L++K G ++DLF G              
Sbjct: 204 QDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIG 263

Query: 110 --------LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                   L    LV+  +++ G   +  F+QA  LF      G+ P+ V  ++++R C 
Sbjct: 264 DATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACN 323

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
              +    + +H    ++G   ++ V  ++L MY+    ++ A+++F  ++ ++V+SWT 
Sbjct: 324 HPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTA 383

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+  F       +A   F +M +S I  + V  ++++   +    LKRG+Q+   ++  G
Sbjct: 384 MIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAG 443

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
             S+ R+  ++++MY+KCG L  +  VF +I+++++V+W A+I+ YVQ+     AL  F 
Sbjct: 444 YGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQ 503

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
            + +E     +S T  SIL       +LE+   +H +  +AG      V N L+S +  C
Sbjct: 504 ALLKEGIKP-NSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNC 562

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G++  A  +F +M   RD+VSWNTII G+  +G  + A   +  M E+G  PD  T+  +
Sbjct: 563 GDLMSAKNLFNDMP-KRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGL 621

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           LNAC       +G  + + +I E            ++ +  + G + DA  +  KL +  
Sbjct: 622 LNACASPEALTEGRRL-HALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPK-- 678

Query: 522 GPNI--WRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFLNSTS 568
             N+  W ++++G   H GR ++A  L    Q++G +K   I+F+ + S
Sbjct: 679 -KNVYSWTSMITGYAQH-GRGKEALELFYQMQQEG-VKPDWITFVGALS 724



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 130/509 (25%), Positives = 246/509 (48%), Gaps = 25/509 (4%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y  + +LS Y K G +++A  +FD +  +NVVSW+ +I G++ +G  +++   F+ M+ S
Sbjct: 348 YVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIES 407

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-------------------- 105
           G+ PN  T + +L A +    L+  + I   +++ G  SD                    
Sbjct: 408 GIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDA 467

Query: 106 --LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
             +FE +    +V+ NA++  ++ ++ +  A+  F      G+ PN+ T  +++  C + 
Sbjct: 468 HRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSS 527

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
            S  L + +H L +K GL  D+ V+N+++ M+    DL +A  +F +M  +D++SW  ++
Sbjct: 528 DSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTII 587

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
             FV       A   F+ M++S I  D +    L++  A    L  G++LHA +      
Sbjct: 588 AGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFD 647

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
            ++ +   +I+MY+KCG ++ +  VF+++ +K++ SWT++I+GY Q+G  +EAL  F +M
Sbjct: 648 CDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKEALELFYQM 707

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
           +QE     D IT V  L+A      +E  L       E           C++  + + G 
Sbjct: 708 QQEGVKP-DWITFVGALSACAHAGLIEEGLHHFQSMKEFNIEPRMEHYGCMVDLFGRAGL 766

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           ++ A     +M    D   W  ++    V+ + E A     K  E  +  D+  ++ + N
Sbjct: 767 LNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLEL-DPNDNGVFVILSN 825

Query: 464 ACGHAGLTNDGLVIFNQMIEENKV-KPSQ 491
               AG+  +   +   M++   V KP Q
Sbjct: 826 IYAAAGMWKEVAKMRKVMLDRGVVKKPGQ 854



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 117/444 (26%), Positives = 228/444 (51%), Gaps = 19/444 (4%)

Query: 119 NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIK 178
           NA++        F +A+ +      S +     T   +++ C+   +    E I+    K
Sbjct: 79  NAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKK 138

Query: 179 LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKI 238
            G+  D+ + N++++MY+   +  +A QIF +M  KDV SW  ++G +V      +A K+
Sbjct: 139 SGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKL 198

Query: 239 FREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSK 298
             +M +  +  D    +++++  A   ++ +G++L+  ++  G  ++L +  ++I M+ K
Sbjct: 199 HEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIK 258

Query: 299 CGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVS 358
           CGD+  +  VF+ +  + LV+WT++I+G  ++G  ++A N F +M +E     D +  VS
Sbjct: 259 CGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQP-DKVAFVS 317

Query: 359 ILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLR 418
           +L A     ALE   ++H    E G+     V   ++S Y+KCG+++ A  VF+ +   R
Sbjct: 318 LLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKG-R 376

Query: 419 DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIF 478
           +VVSW  +I G+  +G  + A   ++KM E+G  P+  T++SIL AC        G  I 
Sbjct: 377 NVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQ 436

Query: 479 NQMIE-----ENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI--WRALLS 531
           + +IE     +++V+ +      ++ + A+ G L DA  +  K+ +    N+  W A+++
Sbjct: 437 DHIIEAGYGSDDRVRTA------LLSMYAKCGSLKDAHRVFEKISK---QNVVAWNAMIT 487

Query: 532 GCVLHVGRFQDAEALRSGSQKKGI 555
             V H  ++ +A A      K+GI
Sbjct: 488 AYVQH-EQYDNALATFQALLKEGI 510


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 178/572 (31%), Positives = 305/572 (53%), Gaps = 29/572 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L++ + K G I +A  +FD +P +++V+W+ +I G + +G  +++   F  M 
Sbjct: 245 DLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRME 304

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG-------------- 109
             G+ P+    V +L A    + LE  + +H  M + G +++++ G              
Sbjct: 305 EEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSME 364

Query: 110 --------LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                   +K   +VS  A++AGF  +    +A L FN    SG+ PN VT ++++  C 
Sbjct: 365 DALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACS 424

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
           +  +    + I    I+ G   D  V  ++L MY+    L  A ++F ++  ++V++W  
Sbjct: 425 SPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNA 484

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+  +V  E   +AL  F+ + K  I  ++    ++++V      L+ GK +H  ++  G
Sbjct: 485 MITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAG 544

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           L+S+L +SN++++M+  CGDL S++++FN + ++ LVSW  II+G+VQ+G  + A + F 
Sbjct: 545 LESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYF- 603

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           KM QE     D IT   +L A     AL    +LH +  EA F     V   LIS Y+KC
Sbjct: 604 KMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKC 663

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G+++ A+ VF ++   ++V SW ++I GY  +G G+ AL L+++M + G  PD  T++  
Sbjct: 664 GSIEDAHQVFHKLP-KKNVYSWTSMIAGYAQHGRGKEALELFYQMQQEGVKPDWITFVGA 722

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L+AC HAGL  +GL  F  M E N ++P  EHYGC+VDL  RAG L++A     K+    
Sbjct: 723 LSACAHAGLIEEGLHHFQSMKEFN-IEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEP 781

Query: 522 GPNIWRALLSGCVLHVGRFQDAEALRSGSQKK 553
              +W ALL  C +H+    + E     +QKK
Sbjct: 782 DSRVWGALLGACQVHL----NVELAEKAAQKK 809



 Score =  240 bits (613), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 159/589 (26%), Positives = 299/589 (50%), Gaps = 32/589 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L++ Y K G    A+ +FD++ EK+V SW++++ GY  +G +E++ K    M+
Sbjct: 144 DIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMV 203

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG-------------- 109
              + P+  T V +L A A  +N++  R ++ L++K G ++DLF G              
Sbjct: 204 QDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIG 263

Query: 110 --------LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                   L    LV+  +++ G   +  F+QA  LF      G+ P+ V  ++++R C 
Sbjct: 264 DATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACN 323

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
              +    + +H    ++G   ++ V  ++L MY+    ++ A+++F  ++ ++V+SWT 
Sbjct: 324 HPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTA 383

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+  F       +A   F +M +S I  + V  ++++   +    LKRG+Q+   ++  G
Sbjct: 384 MIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAG 443

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
             S+ R+  ++++MY+KCG L  +  VF +I+++++V+W A+I+ YVQ+     AL  F 
Sbjct: 444 YGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQ 503

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
            + +E     +S T  SIL       +LE+   +H +  +AG      V N L+S +  C
Sbjct: 504 ALLKEGIKP-NSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNC 562

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G++  A  +F +M   RD+VSWNTII G+  +G  + A   +  M E+G  PD  T+  +
Sbjct: 563 GDLMSAKNLFNDMP-KRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGL 621

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           LNAC       +G  + + +I E            ++ +  + G + DA  +  KL +  
Sbjct: 622 LNACASPEALTEGRRL-HALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPK-- 678

Query: 522 GPNI--WRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFLNSTS 568
             N+  W ++++G   H GR ++A  L    Q++G +K   I+F+ + S
Sbjct: 679 -KNVYSWTSMIAGYAQH-GRGKEALELFYQMQQEG-VKPDWITFVGALS 724



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 130/509 (25%), Positives = 246/509 (48%), Gaps = 25/509 (4%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y  + +LS Y K G +++A  +FD +  +NVVSW+ +I G++ +G  +++   F+ M+ S
Sbjct: 348 YVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIES 407

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-------------------- 105
           G+ PN  T + +L A +    L+  + I   +++ G  SD                    
Sbjct: 408 GIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDA 467

Query: 106 --LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
             +FE +    +V+ NA++  ++ ++ +  A+  F      G+ PN+ T  +++  C + 
Sbjct: 468 HRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSS 527

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
            S  L + +H L +K GL  D+ V+N+++ M+    DL +A  +F +M  +D++SW  ++
Sbjct: 528 DSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTII 587

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
             FV       A   F+ M++S I  D +    L++  A    L  G++LHA +      
Sbjct: 588 AGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFD 647

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
            ++ +   +I+MY+KCG ++ +  VF+++ +K++ SWT++I+GY Q+G  +EAL  F +M
Sbjct: 648 CDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKEALELFYQM 707

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
           +QE     D IT V  L+A      +E  L       E           C++  + + G 
Sbjct: 708 QQEGVKP-DWITFVGALSACAHAGLIEEGLHHFQSMKEFNIEPRMEHYGCMVDLFGRAGL 766

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           ++ A     +M    D   W  ++    V+ + E A     K  E  +  D+  ++ + N
Sbjct: 767 LNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLEL-DPNDNGVFVILSN 825

Query: 464 ACGHAGLTNDGLVIFNQMIEENKV-KPSQ 491
               AG+  +   +   M++   V KP Q
Sbjct: 826 IYAAAGMWKEVAKMRKVMLDRGVVKKPGQ 854



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 117/444 (26%), Positives = 228/444 (51%), Gaps = 19/444 (4%)

Query: 119 NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIK 178
           NA++        F +A+ +      S +     T   +++ C+   +    E I+    K
Sbjct: 79  NAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKK 138

Query: 179 LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKI 238
            G+  D+ + N++++MY+   +  +A QIF +M  KDV SW  ++G +V      +A K+
Sbjct: 139 SGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKL 198

Query: 239 FREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSK 298
             +M +  +  D    +++++  A   ++ +G++L+  ++  G  ++L +  ++I M+ K
Sbjct: 199 HEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIK 258

Query: 299 CGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVS 358
           CGD+  +  VF+ +  + LV+WT++I+G  ++G  ++A N F +M +E     D +  VS
Sbjct: 259 CGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQP-DKVAFVS 317

Query: 359 ILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLR 418
           +L A     ALE   ++H    E G+     V   ++S Y+KCG+++ A  VF+ +   R
Sbjct: 318 LLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKG-R 376

Query: 419 DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIF 478
           +VVSW  +I G+  +G  + A   ++KM E+G  P+  T++SIL AC        G  I 
Sbjct: 377 NVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQ 436

Query: 479 NQMIE-----ENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI--WRALLS 531
           + +IE     +++V+ +      ++ + A+ G L DA  +  K+ +    N+  W A+++
Sbjct: 437 DHIIEAGYGSDDRVRTA------LLSMYAKCGSLKDAHRVFEKISK---QNVVAWNAMIT 487

Query: 532 GCVLHVGRFQDAEALRSGSQKKGI 555
             V H  ++ +A A      K+GI
Sbjct: 488 AYVQH-EQYDNALATFQALLKEGI 510


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 174/555 (31%), Positives = 301/555 (54%), Gaps = 24/555 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + ++KL+  Y     ++ A  +FD+  +   +  + ++ GY  +G + ++++ F  M 
Sbjct: 63  DQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNAMLCGYLQSGRYRETLELFGLMR 122

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
              L  +S +    L A A   + E+   I    V+ G+E +                  
Sbjct: 123 SRNLEVDSCSCTFALKACASSLDYEMGMEIISSAVEKGMEKNRFVGSSMISFLVKFGKIG 182

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +F+G+ N  +V  N+I+ G++    F  A  LF    GSG+ P+ +TM ++I+ C 
Sbjct: 183 EAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIKPSPITMTSLIQACG 242

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            +G+  L + +HG  + LGL  D+ V  S +DMYS + D+++A  +F +M  ++++SW  
Sbjct: 243 GIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNA 302

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+   V     G++  +F  + +S    D   +++L+   +    L  GK LH    +  
Sbjct: 303 MISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTASLATGKILHG-CAIRS 361

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
            +S L LS +I+ +YSKCG L  +  VFN++ ++++++WTA++ G  QNG A +AL  F 
Sbjct: 362 FESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFA 421

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +M QE+  + +S+T VS++ +   L +L+    +HG  F  GF         L+  Y+KC
Sbjct: 422 QM-QEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRLGFAFDIVNMTALVDMYAKC 480

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G ++LA  +F      +DVV WN++I GYG++GHG  A+ +YHKM E G  P+ +T+LS+
Sbjct: 481 GKINLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIYHKMIEEGLKPNQTTFLSL 540

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L+AC H+ L   G+ +FN M  ++ ++P ++HY C+VDLL+RAG   +A  L  K+    
Sbjct: 541 LSACSHSRLVEQGISLFNSMERDHNIRPIEKHYACLVDLLSRAGRFEEAQALIEKMPFQP 600

Query: 522 GPNIWRALLSGCVLH 536
           G  +  ALLSGC  H
Sbjct: 601 GTAVLEALLSGCRTH 615



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 129/282 (45%), Gaps = 40/282 (14%)

Query: 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
           K  HAQ++   L ++  ++  ++  YS    L+++R VF+Q  +   +   A++ GY+Q+
Sbjct: 49  KSTHAQIITNSLSTDQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNAMLCGYLQS 108

Query: 331 GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV 390
           G  RE L  F  MR    + VDS +    L A       E+ +++   A E G  + R V
Sbjct: 109 GRYRETLELFGLMRSRNLE-VDSCSCTFALKACASSLDYEMGMEIISSAVEKGMEKNRFV 167

Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
            + +IS   K G +  A  VF+ M   +DVV WN+II GY   G  + A  L+ +M  +G
Sbjct: 168 GSSMISFLVKFGKIGEAQRVFDGMPN-KDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSG 226

Query: 451 EVPDSSTYLSILNACG-----------HA-----GLTNDGLVIFNQMIEENKVKPSQEHY 494
             P   T  S++ ACG           H      GL ND LV+ +               
Sbjct: 227 IKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTS--------------- 271

Query: 495 GCVVDLLARAGCLSDASGLAGKLLEGMGPNI--WRALLSGCV 534
              VD+ ++ G +  A  +  K+      N+  W A++SGCV
Sbjct: 272 --FVDMYSKMGDIESARWVFYKMPT---RNLVSWNAMISGCV 308


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  300 bits (768), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 181/557 (32%), Positives = 293/557 (52%), Gaps = 24/557 (4%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C +    + L++ Y + G +  AE +F E+P  + V+++ +I  ++  G  E +++ F  
Sbjct: 175 CSETVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEE 234

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-LFEGLKNPYLVSCNA 120
           M LSG  P+  T+  +L A A + +L   + +H  ++K G+  D + EG      V C  
Sbjct: 235 MRLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGV 294

Query: 121 IV-------AGFINNKLFQQAVLL-----------FNFF---RGSGLVPNAVTMLTVIRG 159
           IV       +G   N +    +L+           F+ F     +G+ PN  T   ++R 
Sbjct: 295 IVEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRT 354

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C   G   L E IH L+IK G   D+ V+  ++DMYS    LD A +I   +E KDV+SW
Sbjct: 355 CTYAGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSW 414

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           T M+  +V  E+  +AL+ F++M+   I  D + L + IS  A +  +++G+Q+H++V +
Sbjct: 415 TSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYV 474

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G  +++ + N+++ +Y++CG    + S+F  I  K  ++W  ++SG+ Q+G   EAL  
Sbjct: 475 SGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEV 534

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           FIKM Q      +  T VS ++AS  LA ++   Q+H    + G      V N LIS Y 
Sbjct: 535 FIKMYQAGV-KYNVFTFVSSISASANLADIKQGKQIHATVIKTGCTSETEVANALISLYG 593

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           KCG+++ A + F EM   R+ VSWNTII     +G G  AL L+ +M + G  P+  T++
Sbjct: 594 KCGSIEDAKMQFFEMS-ERNHVSWNTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVTFI 652

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519
            +L AC H GL  +GL  F  M  E+ + P  +HY CVVD+L RAG L  A     ++  
Sbjct: 653 GVLAACSHVGLVEEGLGYFKSMSSEHGIHPRPDHYACVVDILGRAGQLDRARKFVEEMPV 712

Query: 520 GMGPNIWRALLSGCVLH 536
                +WR LLS C +H
Sbjct: 713 SANAMVWRTLLSACRVH 729



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 134/548 (24%), Positives = 261/548 (47%), Gaps = 26/548 (4%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+  Y K G ++ A  +F+++  ++ VSW  ++ GY+ NG  E+++  +  M  SG++P 
Sbjct: 83  LIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGLGEEAVGLYHQMHCSGVVPT 142

Query: 71  SFTMVGVLVAAAGLQNLELARSIH-------------------GLMVKFG---LESDLFE 108
            + +  VL A       E  R +H                    L ++FG   L   +F 
Sbjct: 143 PYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFS 202

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            +     V+ N +++        + A+ +F   R SG  P+ VT+ +++  C ++G    
Sbjct: 203 EMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNK 262

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
            + +H   +K G+  D  +  S+LD+Y     +  A++IF+  +  +V+ W  M+  +  
Sbjct: 263 GKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQ 322

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
                 +  +F +M  + +  +      L+      G++  G+Q+H   +  G +S++ +
Sbjct: 323 ISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYV 382

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
           S  +I MYSK G LD +R +   +  K +VSWT++I+GYVQ+   +EAL  F  M Q   
Sbjct: 383 SGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDM-QLFG 441

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
              D+I L S ++A   + A+    Q+H   + +G+    S+ N L++ Y++CG    A+
Sbjct: 442 IWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAF 501

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
            +FE +   +D ++WN ++ G+  +G  E AL ++ KM + G   +  T++S ++A  + 
Sbjct: 502 SLFEAIEH-KDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISASANL 560

Query: 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRA 528
                G  I   +I+      + E    ++ L  + G + DA     ++ E    + W  
Sbjct: 561 ADIKQGKQIHATVIKTGCTSET-EVANALISLYGKCGSIEDAKMQFFEMSERNHVS-WNT 618

Query: 529 LLSGCVLH 536
           +++ C  H
Sbjct: 619 IITSCSQH 626



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 114/426 (26%), Positives = 197/426 (46%), Gaps = 15/426 (3%)

Query: 117 SCNAIVAGFINNKLFQQAVLLF----NFFRGSGLVPNAVTMLTVIRGCVALGSRALCELI 172
           S N  + GF+ ++  ++ + LF       RG G V  A   L   RG V      L  +I
Sbjct: 8   SLNKSLTGFLAHEDPEKLLSLFAAKVRQCRGLGSVDFACA-LRECRGSVK--HWPLVPVI 64

Query: 173 HGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYA 232
           H   I  GL  D    N ++D+Y+    +  A ++F ++  +D +SW  M+  +      
Sbjct: 65  HAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGLG 124

Query: 233 GDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSI 292
            +A+ ++ +M  S ++     L +++S        ++G+ +HAQV   G  SE  + N++
Sbjct: 125 EEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNAL 184

Query: 293 IAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVD 352
           IA+Y + G L  +  VF+++     V++  +IS + Q G    AL  F +MR     + D
Sbjct: 185 IALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGW-TPD 243

Query: 353 SITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFE 412
            +T+ S+L A   +  L    QLH    +AG      ++  L+  Y KCG +  A  +F+
Sbjct: 244 CVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFK 303

Query: 413 EMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTN 472
             G   +VV WN ++  YG       +  L+ +M   G  P+  TY  +L  C +AG  N
Sbjct: 304 S-GDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEIN 362

Query: 473 DGLVIFNQMIEENKVKPSQEHY--GCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALL 530
            G  I    I   K     + Y  G ++D+ ++ G L  A  +  ++LE      W +++
Sbjct: 363 LGEQIHLLSI---KTGFESDMYVSGVLIDMYSKYGWLDKARRIL-EVLEAKDVVSWTSMI 418

Query: 531 SGCVLH 536
           +G V H
Sbjct: 419 AGYVQH 424


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 1047

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 176/573 (30%), Positives = 309/573 (53%), Gaps = 32/573 (5%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           ++ Y  + L++ Y + G    AE +F+ + +++ VS++ +I G S  G+ +K+++ F  M
Sbjct: 304 LETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKM 363

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL-FEGLKNPYLVSCNAI 121
            L  L P+  T+  +L A + +  L + +  H   +K G+ SD+  EG      V C+ I
Sbjct: 364 CLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDI 423

Query: 122 -----------------------VAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                                    G ++N    ++  +F   +  G+ PN  T  +++R
Sbjct: 424 KTAHEFFLSTETENVVLWNVMLVAYGLLDN--LNESFKIFTQMQMEGIEPNQFTYPSILR 481

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C +L +  L E IH   +K G   +V V++ ++DMY+ L  LD A++IFR ++ KDV+S
Sbjct: 482 TCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVS 541

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           WT M+  +   E   +AL +F+EM+   I  D +   + IS  A +  L +G+Q+HAQ  
Sbjct: 542 WTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIHAQAC 601

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
           + G   +L + N+++++Y++CG +  +   F++I  K  +SW ++ISG+ Q+G   EAL+
Sbjct: 602 VSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEALS 661

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
            F +M +   + ++S T    ++A+  +A +++  Q+H +  + G      V N LI+ Y
Sbjct: 662 LFSQMSKAGQE-INSFTFGPAVSAAANVANVKLGKQIHAMIIKTGHDSETEVSNVLITLY 720

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
           +KCGN+D A   F EM   ++ +SWN ++ GY  +GHG  AL+L+  M + G +P+  T+
Sbjct: 721 AKCGNIDDAERQFFEMP-EKNEISWNAMLTGYSQHGHGFKALSLFEDMKQLGVLPNHVTF 779

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
           + +L+AC H GL ++G+  F  M E + + P  EHY CVVDLL R+G LS A     ++ 
Sbjct: 780 VGVLSACSHVGLVDEGIKYFQSMREVHGLVPKPEHYACVVDLLGRSGLLSRARRFVEEMP 839

Query: 519 EGMGPNIWRALLSGCVLH----VGRFQDAEALR 547
                 + R LLS C++H    +G F  +  L 
Sbjct: 840 IQPDAMVCRTLLSACIVHKNIDIGEFAASHLLE 872



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 150/577 (25%), Positives = 256/577 (44%), Gaps = 30/577 (5%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C +     +L+  Y   G +  A  +FDE+P + +  W+ V+H +       + +  F  
Sbjct: 100 CAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRR 159

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQ-NLELARSIHGLMVKFGLESDLF------------- 107
           M+   + P+  T  GVL    G          IH   +  G E+ LF             
Sbjct: 160 MLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNG 219

Query: 108 ---------EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                    +GL+    VS  A+++G   +   ++AVLLF     SG+ P      +V+ 
Sbjct: 220 FLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLS 279

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C  +    + E +HGL +K G  L+  V N+++ +YS L +   A Q+F  M  +D +S
Sbjct: 280 ACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVS 339

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           +  ++       Y+  AL++F++M    +  D V + +L+S  + +G L  GKQ H+  +
Sbjct: 340 YNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAI 399

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
             G+ S++ L  +++ +Y KC D+ ++   F     +++V W  ++  Y       E+  
Sbjct: 400 KAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFK 459

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
            F +M+ E  +  +  T  SIL     L A+++  Q+H    + GF     V + LI  Y
Sbjct: 460 IFTQMQMEGIEP-NQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMY 518

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
           +K G +D A  +F  +   +DVVSW  +I GY  +     AL L+ +M + G   D+  +
Sbjct: 519 AKLGKLDHALKIFRRLK-EKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGF 577

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
            S ++AC      N G  I  Q                +V L AR G + DA     K+ 
Sbjct: 578 ASAISACAGIQALNQGQQIHAQACVSG-YSDDLSVGNALVSLYARCGKVRDAYFAFDKIF 636

Query: 519 EGMGPNI-WRALLSGCVLHVGRFQDAEALRSGSQKKG 554
                NI W +L+SG     G  ++A +L S   K G
Sbjct: 637 S--KDNISWNSLISG-FAQSGHCEEALSLFSQMSKAG 670



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 104/358 (29%), Positives = 182/358 (50%), Gaps = 5/358 (1%)

Query: 114 YLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIH 173
           +L    A+   + N++     +   +     G+  N+ T L ++ GC++ G  +    +H
Sbjct: 32  FLEHNTALSYAYSNDEGEANGINFLHLMEERGVRANSQTYLWLLDGCLSSGWFSDGWKLH 91

Query: 174 GLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAG 233
           G  +K+G   +V +   ++D+Y    DLD A+ +F EM  + +  W +++  FV  + AG
Sbjct: 92  GKILKMGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAG 151

Query: 234 DALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG--KQLHAQVVLGGLQSELRLSNS 291
             L +FR M + ++  D      ++      GD+     +++HA+ +  G ++ L + N 
Sbjct: 152 RVLGLFRRMLQEKVKPDERTYAGVLR-GCGGGDVPFHCVEKIHARTITHGYENSLFVCNP 210

Query: 292 IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
           +I +Y K G L+S++ VF+ + ++  VSW A++SG  Q+GC  EA+  F +M        
Sbjct: 211 LIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPT 270

Query: 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVF 411
             I   S+L+A  ++   ++  QLHG+  + GF     V N L++ YS+ GN   A  VF
Sbjct: 271 PYI-FSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVF 329

Query: 412 EEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAG 469
             M   RD VS+N++I G    G+ + AL L+ KM      PD  T  S+L+AC   G
Sbjct: 330 NAM-LQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVG 386


>gi|224094835|ref|XP_002310258.1| predicted protein [Populus trichocarpa]
 gi|222853161|gb|EEE90708.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  299 bits (766), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 186/616 (30%), Positives = 311/616 (50%), Gaps = 60/616 (9%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHE-KSMKAFSHMMLS-GLL 68
           +L N  K+G +  A  LFD++ +++ +SW+ +I GY +NG +  +++  FS M +  GL 
Sbjct: 7   VLKNLVKTGHLNNARQLFDKMLQRDEISWTTIISGY-VNGMNTTEALSLFSKMWVEPGLH 65

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPYL----------- 115
            + F +   L A     ++    S+HG  VK    + +F G  L + Y+           
Sbjct: 66  MDPFILSLALKACGLNMSVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGKVDEGCIV 125

Query: 116 ---------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
                    VS  AI+AG +     ++A+  F+      +  +  T  + ++ C   G+ 
Sbjct: 126 FKEMPLRNVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKACADSGAL 185

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
                IH  T+K G      V N++  MY+    LD  +++F  M  +DV+SWT ++   
Sbjct: 186 NYGREIHCQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRLFESMTQRDVVSWTTIIMSN 245

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
           V      +A+K FR MR++ +  +      +IS  A LG ++ G+QLHA V+  GL   L
Sbjct: 246 VQIGQEENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIEWGEQLHAHVIRRGLVDSL 305

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            ++NSI+AMYSKC  LD + +VF  ++ + ++SW+ +ISGY Q GC  EA +    MR+E
Sbjct: 306 SVANSIMAMYSKCWQLDLASTVFQGLSRRDIISWSTMISGYAQGGCGEEAFDYLSWMRRE 365

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
                +     S+L+  G +A LE   QLH      G  +   VQ+ LI+ YSKCG++  
Sbjct: 366 GPRP-NEFAFASVLSVCGNMAILEQGKQLHAHVLCVGLEQNTMVQSALINMYSKCGSIKE 424

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           A  +F+E  +  ++VSW  +I GY  +G+ + A+ L+ K+ + G  PDS T++++L AC 
Sbjct: 425 ASKIFDEAEY-NNIVSWTAMINGYAEHGYSQEAIDLFKKLPKVGLRPDSVTFIAVLAACS 483

Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIW 526
           HAGL + G   FN + + +++ PS++HYGC++DLL RAG L+DA  +   +       +W
Sbjct: 484 HAGLVDLGFHYFNSLSKVHQICPSKDHYGCMIDLLCRAGRLNDAESMIQSMPFQRDDVVW 543

Query: 527 RALLSGCVLH---------------------------------VGRFQDAEALRSGSQKK 553
             LL  C +H                                  G++++A  +R   + K
Sbjct: 544 STLLRACRIHGDVDCGKRAAEKILQLDPNCAVTHITLANMYAAKGKWKEAAEVRKMMKSK 603

Query: 554 GIIKIPGISFLNSTSR 569
           G++K PG S++    R
Sbjct: 604 GVVKEPGWSWIKFKDR 619



 Score =  195 bits (496), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 129/460 (28%), Positives = 220/460 (47%), Gaps = 46/460 (10%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           S L+  Y K GK+ E   +F E+P +NVVSW+ +I G    G++++++  FS M +  + 
Sbjct: 107 SALVDMYMKIGKVDEGCIVFKEMPLRNVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVG 166

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES----------------------DL 106
            +++T    L A A    L   R IH   +K G  +                       L
Sbjct: 167 CDTYTFSSALKACADSGALNYGREIHCQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRL 226

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           FE +    +VS   I+   +     + AV  F   R + + PN  T   VI GC  LG  
Sbjct: 227 FESMTQRDVVSWTTIIMSNVQIGQEENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRI 286

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
              E +H   I+ GL+  +SV NS++ MYS    LD A  +F+ +  +D+ISW+ M+  +
Sbjct: 287 EWGEQLHAHVIRRGLVDSLSVANSIMAMYSKCWQLDLASTVFQGLSRRDIISWSTMISGY 346

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
                  +A      MR+     +  A  +++SV   +  L++GKQLHA V+  GL+   
Sbjct: 347 AQGGCGEEAFDYLSWMRREGPRPNEFAFASVLSVCGNMAILEQGKQLHAHVLCVGLEQNT 406

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            + +++I MYSKCG +  +  +F++    ++VSWTA+I+GY ++G ++EA++ F K+ + 
Sbjct: 407 MVQSALINMYSKCGSIKEASKIFDEAEYNNIVSWTAMINGYAEHGYSQEAIDLFKKLPKV 466

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN------------CL 394
                DS+T +++L A             H    + GF  + S+              C+
Sbjct: 467 GLRP-DSVTFIAVLAACS-----------HAGLVDLGFHYFNSLSKVHQICPSKDHYGCM 514

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNG 434
           I    + G ++ A  + + M F RD V W+T++    ++G
Sbjct: 515 IDLLCRAGRLNDAESMIQSMPFQRDDVVWSTLLRACRIHG 554



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 88/409 (21%), Positives = 187/409 (45%), Gaps = 36/409 (8%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ L + Y K GK+     LF+ + +++VVSW+ +I      G  E ++KAF  M  + +
Sbjct: 207 ANTLATMYNKCGKLDYGLRLFESMTQRDVVSWTTIIMSNVQIGQEENAVKAFRRMRETDV 266

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG----------------------LESD 105
            PN FT   V+   A L  +E    +H  +++ G                      L S 
Sbjct: 267 SPNEFTFAAVISGCATLGRIEWGEQLHAHVIRRGLVDSLSVANSIMAMYSKCWQLDLAST 326

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F+GL    ++S + +++G+      ++A    ++ R  G  PN     +V+  C  +  
Sbjct: 327 VFQGLSRRDIISWSTMISGYAQGGCGEEAFDYLSWMRREGPRPNEFAFASVLSVCGNMAI 386

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
               + +H   + +GL  +  V +++++MYS    +  A +IF E E  +++SWT M+  
Sbjct: 387 LEQGKQLHAHVLCVGLEQNTMVQSALINMYSKCGSIKEASKIFDEAEYNNIVSWTAMING 446

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           + +  Y+ +A+ +F+++ K  +  D+V  + +++  +  G +  G   H    L  +   
Sbjct: 447 YAEHGYSQEAIDLFKKLPKVGLRPDSVTFIAVLAACSHAGLVDLG--FHYFNSLSKVHQI 504

Query: 286 LRLSNS---IIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISGYVQNG---CAREALN 338
               +    +I +  + G L+ + S+   +  ++  V W+ ++     +G   C + A  
Sbjct: 505 CPSKDHYGCMIDLLCRAGRLNDAESMIQSMPFQRDDVVWSTLLRACRIHGDVDCGKRAAE 564

Query: 339 QFIKMRQEKTDSVDSITLVSILTASG---ELAALEICLQLHGIAFEAGF 384
           + +++  +   +V  ITL ++  A G   E A +   ++  G+  E G+
Sbjct: 565 KILQL--DPNCAVTHITLANMYAAKGKWKEAAEVRKMMKSKGVVKEPGW 611



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 68/195 (34%), Positives = 99/195 (50%), Gaps = 1/195 (0%)

Query: 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD 349
           N ++    K G L+++R +F+++ ++  +SWT IISGYV      EAL+ F KM  E   
Sbjct: 5   NLVLKNLVKTGHLNNARQLFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKMWVEPGL 64

Query: 350 SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYI 409
            +D   L   L A G   ++     LHG + +  F     V + L+  Y K G VD   I
Sbjct: 65  HMDPFILSLALKACGLNMSVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGKVDEGCI 124

Query: 410 VFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAG 469
           VF+EM  LR+VVSW  II G    G+ + ALA +  M       D+ T+ S L AC  +G
Sbjct: 125 VFKEMP-LRNVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKACADSG 183

Query: 470 LTNDGLVIFNQMIEE 484
             N G  I  Q +++
Sbjct: 184 ALNYGREIHCQTLKK 198


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 182/620 (29%), Positives = 321/620 (51%), Gaps = 67/620 (10%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + L+  Y +   + +A  +F+E+P ++VVSW+ +I GY+ NG+  ++++ +    
Sbjct: 149 DLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFR 208

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPYL------ 115
             G++P+S+TM  VL A  GL ++E    IHGL+ K G++ D+    GL + Y       
Sbjct: 209 NLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLI 268

Query: 116 --------------VSCNAIVAGFINNKLFQQAVLLF----NFFRGSGLVPNAVTMLTVI 157
                         VS N ++ G+    L+++++ LF    N F+     P+ +T+ +++
Sbjct: 269 DGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQFK-----PDLLTITSIL 323

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
           + C  LG     + +H   I  G   D + +N +++MY+   +L A+ ++F  M+CKD +
Sbjct: 324 QACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSV 383

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           SW  M+ +++      +A+K+F+ M K+ +  D+V  + L+S++  LGDL  GK+LH  +
Sbjct: 384 SWNSMINVYIQNGSFDEAMKLFK-MMKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDL 442

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
              G  S + +SN+++ MY+KCG++  S  VF  +  + +++W  II+  V +      L
Sbjct: 443 AKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGL 502

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
               +MR E   + D  T++SIL     LAA     ++HG  F+ G      V N LI  
Sbjct: 503 RMISRMRTEGV-TPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEM 561

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           YSKCG++  ++ VF+ M   +DVV+W  +I   G+ G G+ A+  + +M   G VPD   
Sbjct: 562 YSKCGSLRNSFQVFKLMK-TKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVA 620

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL 517
           +++I+ AC H+GL  +GL  F++M ++ K++P  EHY CVVDLL+R+  L  A      +
Sbjct: 621 FVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSM 680

Query: 518 LEGMGPNIWRALLSGCVLH---------------------------------VGRFQDAE 544
                 +IW ALLS C +                                  +G++    
Sbjct: 681 PLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQVR 740

Query: 545 ALRSGSQKKGIIKIPGISFL 564
           ++R   + +G+ K PG S++
Sbjct: 741 SIRKSIKARGLKKDPGCSWM 760



 Score =  237 bits (605), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 168/556 (30%), Positives = 282/556 (50%), Gaps = 37/556 (6%)

Query: 8   SSKLLSNYFKSGKIKEAENLFD-EIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSG 66
           S+KL++ Y        + ++F    P  NV  W+ +I   + NG   +++  +S      
Sbjct: 51  SAKLIAKYAHFRDPTSSFSVFRLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIR 110

Query: 67  LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL-------------------- 106
           L P+++T   V+ A AGL + E+A+SIH  ++  G  SDL                    
Sbjct: 111 LQPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKAR 170

Query: 107 --FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
             FE +    +VS N++++G+  N  + +A+ ++  FR  G+VP++ TM +V+R C  LG
Sbjct: 171 KVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLG 230

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
           S    ++IHGL  K+G+  DV VNN +L MY     L    +IF +M  +D +SW  M+ 
Sbjct: 231 SVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMIC 290

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            +       +++K+F EM  ++   D + + +++     LGDL+ GK +H  ++  G + 
Sbjct: 291 GYSQVGLYEESIKLFMEM-VNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYEC 349

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           +   SN +I MY+KCG+L +S+ VF+ +  K  VSW ++I+ Y+QNG   EA+  F  M 
Sbjct: 350 DTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMM- 408

Query: 345 QEKTD-SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
             KTD   DS+T V +L+ S +L  L +  +LH    + GF     V N L+  Y+KCG 
Sbjct: 409 --KTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGE 466

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           +  +  VFE M   RD+++WNTII     +      L +  +M   G  PD +T LSIL 
Sbjct: 467 MGDSLKVFENMK-ARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILP 525

Query: 464 ACGHAGLTNDGLVIFNQMIE---ENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
            C        G  I   + +   E+ V         ++++ ++ G L ++  +  KL++ 
Sbjct: 526 VCSLLAAKRQGKEIHGCIFKLGLESDVPVGN----VLIEMYSKCGSLRNSFQVF-KLMKT 580

Query: 521 MGPNIWRALLSGCVLH 536
                W AL+S C ++
Sbjct: 581 KDVVTWTALISACGMY 596



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 102/329 (31%), Positives = 165/329 (50%), Gaps = 4/329 (1%)

Query: 155 TVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFR-EMEC 213
           ++ R   +  +      +H L I LGL   V  +  ++  Y+   D  ++  +FR     
Sbjct: 18  SISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPS 77

Query: 214 KDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQL 273
            +V  W  ++          +AL ++ E ++ R+  DT    ++I+  A L D +  K +
Sbjct: 78  NNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSI 137

Query: 274 HAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA 333
           H +V+  G  S+L + N++I MY +  DLD +R VF ++  + +VSW ++ISGY  NG  
Sbjct: 138 HDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYW 197

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC 393
            EAL  + + R       DS T+ S+L A G L ++E    +HG+  + G  +   V N 
Sbjct: 198 NEALEIYYRFRNLGV-VPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNG 256

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           L+S Y K   +     +F++M  LRD VSWNT+I GY   G  E ++ L+ +M    + P
Sbjct: 257 LLSMYCKFNGLIDGRRIFDKM-VLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQFK-P 314

Query: 454 DSSTYLSILNACGHAGLTNDGLVIFNQMI 482
           D  T  SIL ACGH G    G  + + MI
Sbjct: 315 DLLTITSILQACGHLGDLEFGKYVHDYMI 343



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/218 (34%), Positives = 115/218 (52%), Gaps = 4/218 (1%)

Query: 272 QLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVS-WTAIISGYVQN 330
           +LH+ ++  GL   +  S  +IA Y+   D  SS SVF   +  + V  W +II     N
Sbjct: 34  KLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYLWNSIIRALTHN 93

Query: 331 GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV 390
           G   EAL+ + + ++ +    D+ T  S++ A   L   E+   +H    + GF     +
Sbjct: 94  GLFSEALSLYSETQRIRLQP-DTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYI 152

Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
            N LI  Y +  ++D A  VFEEM  LRDVVSWN++I GY  NG+   AL +Y++    G
Sbjct: 153 GNALIDMYCRFNDLDKARKVFEEMP-LRDVVSWNSLISGYNANGYWNEALEIYYRFRNLG 211

Query: 451 EVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVK 488
            VPDS T  S+L ACG  G   +G +I + +IE+  +K
Sbjct: 212 VVPDSYTMSSVLRACGGLGSVEEGDII-HGLIEKIGIK 248


>gi|449435936|ref|XP_004135750.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 187/616 (30%), Positives = 308/616 (50%), Gaps = 57/616 (9%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  S L+  Y ++G + +A+ LFD IP+K+ V W+++++GY  NG    ++K F  M 
Sbjct: 92  DVFVGSSLIKLYAENGHLSDAQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMR 151

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
            S + PNS T   VL   A    L+L   +HG+ V  GLE D                  
Sbjct: 152 HSEIKPNSVTFACVLSVCASEAMLDLGTQLHGIAVSCGLELDSPVANTLLAMYSKCQCLQ 211

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               LF+      LVS N I++G++ N L  +A  LF     +G+ P+++T  + +    
Sbjct: 212 AARKLFDTSPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVN 271

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            L S   C+ IHG  I+  ++LDV + ++++D+Y    D++ A +I  +    D +  T 
Sbjct: 272 ELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKILCQSSSFDTVVCTT 331

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+  +V      +AL+ FR + + R+   +V   ++    A L  L  GK+LH  ++   
Sbjct: 332 MISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTK 391

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           L  +  + ++I+ MY+KCG LD +  VFN+ITEK  + W ++I+   QNG   EA+N F 
Sbjct: 392 LDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFR 451

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +M  E T   D +++   L+A   L AL    ++HG+  +         ++ LI  Y+KC
Sbjct: 452 QMGMEGT-RYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKC 510

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           GN++ +  VF+ M   R+ VSWN+II  YG +G  +  LAL+H+M   G  PD  T+L I
Sbjct: 511 GNLNFSRRVFDRMQ-ERNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGI 569

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           ++ACGHAG  ++G+  ++ M EE  +    EHY CV D+  RAG L +A      +    
Sbjct: 570 ISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLDEAFETINSMPFPP 629

Query: 522 GPNIWRALLSGCVLH---------------------------------VGRFQDAEALRS 548
              +W  LL  C +H                                  G+++    +RS
Sbjct: 630 DAGVWGTLLGACHIHGNVELAEVASKHLFDLDPLNSGYYVLLANVQAGAGKWRKVLKVRS 689

Query: 549 GSQKKGIIKIPGISFL 564
             +++G+ K+PG S++
Sbjct: 690 IMKERGVRKVPGYSWI 705



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 128/460 (27%), Positives = 225/460 (48%), Gaps = 24/460 (5%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D   ++ LL+ Y K   ++ A  LFD  P+ ++VSW+ +I GY  NG   ++   F  M
Sbjct: 192 LDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQNGLMGEAEHLFRGM 251

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPYL----- 115
           + +G+ P+S T    L     L +L+  + IHG +++  +  D+F    L + Y      
Sbjct: 252 ISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDV 311

Query: 116 ---------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                          V C  +++G++ N   ++A+  F +     + P +VT  ++    
Sbjct: 312 EMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAF 371

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             L +  L + +HG  IK  L     V +++LDMY+    LD A ++F  +  KD I W 
Sbjct: 372 AGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWN 431

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+         G+A+ +FR+M       D V++   +S  A L  L  GK++H  ++ G
Sbjct: 432 SMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKG 491

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
            L+S+L   +S+I MY+KCG+L+ SR VF+++ E++ VSW +IIS Y  +G  +E L  F
Sbjct: 492 PLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQERNEVSWNSIISAYGNHGDLKECLALF 551

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQ-LHGIAFEAGFPRYRSVQNCLISSYS 399
            +M +      D +T + I++A G    ++  ++  H +  E G P       C+   + 
Sbjct: 552 HEMLRNGIQP-DHVTFLGIISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMFG 610

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETA 439
           + G +D A+     M F  D   W T++    ++G+ E A
Sbjct: 611 RAGRLDEAFETINSMPFPPDAGVWGTLLGACHIHGNVELA 650



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 140/516 (27%), Positives = 252/516 (48%), Gaps = 25/516 (4%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTM 74
           Y ++G +K+A+NLF  +      +W+ +I G+++ G    ++  +  M+ +G+ P+ +T 
Sbjct: 2   YVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTF 61

Query: 75  VGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG-------LKNPYL------------ 115
             V+ A  GL+++++ + +H  +   GL+ D+F G        +N +L            
Sbjct: 62  PYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQ 121

Query: 116 ---VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELI 172
              V  N ++ G++ N     A+ +F   R S + PN+VT   V+  C +     L   +
Sbjct: 122 KDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQL 181

Query: 173 HGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYA 232
           HG+ +  GL LD  V N++L MYS    L AA ++F      D++SW  ++  +V     
Sbjct: 182 HGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQNGLM 241

Query: 233 GDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSI 292
           G+A  +FR M  + I  D++   + +     L  LK  K++H  ++   +  ++ L +++
Sbjct: 242 GEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSAL 301

Query: 293 IAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVD 352
           I +Y KC D++ ++ +  Q +    V  T +ISGYV NG  +EAL  F  + QE+     
Sbjct: 302 IDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPT- 360

Query: 353 SITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFE 412
           S+T  SI  A   LAAL +  +LHG   +        V + ++  Y+KCG +DLA  VF 
Sbjct: 361 SVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFN 420

Query: 413 EMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTN 472
            +   +D + WN++I     NG    A+ L+ +M   G   D  +    L+AC +    +
Sbjct: 421 RIT-EKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALH 479

Query: 473 DGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLS 508
            G  I   MI +  ++        ++D+ A+ G L+
Sbjct: 480 YGKEIHGLMI-KGPLRSDLYAESSLIDMYAKCGNLN 514



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 134/432 (31%), Positives = 215/432 (49%), Gaps = 10/432 (2%)

Query: 105 DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
           +LF  L+     + N ++ GF     F  A+L +    G+G+ P+  T   V++ C  L 
Sbjct: 13  NLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTFPYVVKACCGLK 72

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
           S  + +++H     +GL  DV V +S++ +Y+    L  A  +F  +  KD + W  M+ 
Sbjct: 73  SVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQKDSVLWNVMLN 132

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            +V    +G+A+KIF EMR S I  ++V    ++SV A    L  G QLH   V  GL+ 
Sbjct: 133 GYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQLHGIAVSCGLEL 192

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           +  ++N+++AMYSKC  L ++R +F+   +  LVSW  IISGYVQNG   EA + F  M 
Sbjct: 193 DSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMI 252

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
                  DSIT  S L    EL +L+ C ++HG            +++ LI  Y KC +V
Sbjct: 253 SAGIKP-DSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDV 311

Query: 405 DLAY-IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           ++A  I+ +   F  D V   T+I GY +NG  + AL  +  + +    P S T+ SI  
Sbjct: 312 EMAQKILCQSSSF--DTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFP 369

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQE-HYG-CVVDLLARAGCLSDASGLAGKLLEGM 521
           A       N G  +   +I   K K  ++ H G  ++D+ A+ G L  A  +  ++ E  
Sbjct: 370 AFAGLAALNLGKELHGSII---KTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITE-K 425

Query: 522 GPNIWRALLSGC 533
               W ++++ C
Sbjct: 426 DAICWNSMITSC 437



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/269 (30%), Positives = 132/269 (49%), Gaps = 2/269 (0%)

Query: 194 MYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVA 253
           MY     L  A  +F  ++     +W  M+  F        AL  + +M  + +  D   
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 254 LLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT 313
              ++     L  +K GK +H  V L GL+ ++ + +S+I +Y++ G L  ++ +F+ I 
Sbjct: 61  FPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIP 120

Query: 314 EKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICL 373
           +K  V W  +++GYV+NG +  A+  F++MR  +    +S+T   +L+     A L++  
Sbjct: 121 QKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKP-NSVTFACVLSVCASEAMLDLGT 179

Query: 374 QLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVN 433
           QLHGIA   G      V N L++ YSKC  +  A  +F+      D+VSWN II GY  N
Sbjct: 180 QLHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSP-QSDLVSWNGIISGYVQN 238

Query: 434 GHGETALALYHKMTETGEVPDSSTYLSIL 462
           G    A  L+  M   G  PDS T+ S L
Sbjct: 239 GLMGEAEHLFRGMISAGIKPDSITFASFL 267


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  298 bits (763), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 182/620 (29%), Positives = 321/620 (51%), Gaps = 67/620 (10%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + L+  Y +   + +A  +F+E+P ++VVSW+ +I GY+ NG+  ++++ +    
Sbjct: 208 DLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFR 267

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPYL------ 115
             G++P+S+TM  VL A  GL ++E    IHGL+ K G++ D+    GL + Y       
Sbjct: 268 NLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLI 327

Query: 116 --------------VSCNAIVAGFINNKLFQQAVLLF----NFFRGSGLVPNAVTMLTVI 157
                         VS N ++ G+    L+++++ LF    N F+     P+ +T+ +++
Sbjct: 328 DGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQFK-----PDLLTITSIL 382

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
           + C  LG     + +H   I  G   D + +N +++MY+   +L A+ ++F  M+CKD +
Sbjct: 383 QACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSV 442

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           SW  M+ +++      +A+K+F+ M K+ +  D+V  + L+S++  LGDL  GK+LH  +
Sbjct: 443 SWNSMINVYIQNGSFDEAMKLFK-MMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDL 501

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
              G  S + +SN+++ MY+KCG++  S  VF  +  + +++W  II+  V +      L
Sbjct: 502 AKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGL 561

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
               +MR E   + D  T++SIL     LAA     ++HG  F+ G      V N LI  
Sbjct: 562 RMISRMRTEGV-TPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEM 620

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           YSKCG++  ++ VF+ M   +DVV+W  +I   G+ G G+ A+  + +M   G VPD   
Sbjct: 621 YSKCGSLRNSFQVFKLMK-TKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVA 679

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL 517
           +++I+ AC H+GL  +GL  F++M ++ K++P  EHY CVVDLL+R+  L  A      +
Sbjct: 680 FVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSM 739

Query: 518 LEGMGPNIWRALLSGCVLH---------------------------------VGRFQDAE 544
                 +IW ALLS C +                                  +G++    
Sbjct: 740 PLKPDSSIWGALLSACRMSGDTEIAQRVSERIIELNPDDTGYYVLVSNVYAALGKWDQVR 799

Query: 545 ALRSGSQKKGIIKIPGISFL 564
           ++R   + +G+ K PG S++
Sbjct: 800 SIRKSIKARGLKKDPGCSWM 819



 Score =  238 bits (606), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 168/556 (30%), Positives = 282/556 (50%), Gaps = 37/556 (6%)

Query: 8   SSKLLSNYFKSGKIKEAENLFD-EIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSG 66
           S+KL++ Y        + ++F    P  NV  W+ +I   + NG   +++  +S      
Sbjct: 110 SAKLIAKYAHFRDPTSSFSVFRLASPSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIR 169

Query: 67  LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL-------------------- 106
           L P+++T   V+ A AGL + E+A+SIH  ++  G  SDL                    
Sbjct: 170 LQPDTYTFPSVINACAGLLDFEMAKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKAR 229

Query: 107 --FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
             FE +    +VS N++++G+  N  + +A+ ++  FR  G+VP++ TM +V+R C  LG
Sbjct: 230 KVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLG 289

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
           S    ++IHGL  K+G+  DV VNN +L MY     L    +IF +M  +D +SW  M+ 
Sbjct: 290 SVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMIC 349

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            +       +++K+F EM  ++   D + + +++     LGDL+ GK +H  ++  G + 
Sbjct: 350 GYSQVGLYEESIKLFMEM-VNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYEC 408

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           +   SN +I MY+KCG+L +S+ VF+ +  K  VSW ++I+ Y+QNG   EA+  F  M 
Sbjct: 409 DTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMM- 467

Query: 345 QEKTD-SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
             KTD   DS+T V +L+ S +L  L +  +LH    + GF     V N L+  Y+KCG 
Sbjct: 468 --KTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGE 525

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           +  +  VFE M   RD+++WNTII     +      L +  +M   G  PD +T LSIL 
Sbjct: 526 MGDSLKVFENMK-ARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILP 584

Query: 464 ACGHAGLTNDGLVIFNQMIE---ENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
            C        G  I   + +   E+ V         ++++ ++ G L ++  +  KL++ 
Sbjct: 585 VCSLLAAKRQGKEIHGCIFKLGLESDVPVGN----VLIEMYSKCGSLRNSFQVF-KLMKT 639

Query: 521 MGPNIWRALLSGCVLH 536
                W AL+S C ++
Sbjct: 640 KDVVTWTALISACGMY 655



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 110/357 (30%), Positives = 173/357 (48%), Gaps = 17/357 (4%)

Query: 140 FFRGSGLVPNAVTMLTVIRGCVALG-----SRALCEL--------IHGLTIKLGLILDVS 186
           F+  + L    +  L V+  C         SRAL           +H L I LGL   V 
Sbjct: 49  FYTSTKLFSRVMKTLRVLHECSRQTLFSSISRALASAATTTQLHKLHSLIITLGLHHSVI 108

Query: 187 VNNSVLDMYSCLMDLDAAIQIFR-EMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKS 245
            +  ++  Y+   D  ++  +FR      +V  W  ++          +AL ++ E ++ 
Sbjct: 109 FSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYXWNSIIRALTHNGLFSEALSLYSETQRI 168

Query: 246 RIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSS 305
           R+  DT    ++I+  A L D +  K +H +V+  G  S+L + N++I MY +  DLD +
Sbjct: 169 RLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKA 228

Query: 306 RSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGE 365
           R VF ++  + +VSW ++ISGY  NG   EAL  + + R       DS T+ S+L A G 
Sbjct: 229 RKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGV-VPDSYTMSSVLRACGG 287

Query: 366 LAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNT 425
           L ++E    +HG+  + G  +   V N L+S Y K   +     +F++M  LRD VSWNT
Sbjct: 288 LGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKM-VLRDAVSWNT 346

Query: 426 IIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMI 482
           +I GY   G  E ++ L+ +M    + PD  T  SIL ACGH G    G  + + MI
Sbjct: 347 MICGYSQVGLYEESIKLFMEMVNQFK-PDLLTITSILQACGHLGDLEFGKYVHDYMI 402



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 76/218 (34%), Positives = 114/218 (52%), Gaps = 4/218 (1%)

Query: 272 QLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLV-SWTAIISGYVQN 330
           +LH+ ++  GL   +  S  +IA Y+   D  SS SVF   +  + V  W +II     N
Sbjct: 93  KLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYXWNSIIRALTHN 152

Query: 331 GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV 390
           G   EAL+ + + ++ +    D+ T  S++ A   L   E+   +H      GF     +
Sbjct: 153 GLFSEALSLYSETQRIRLQP-DTYTFPSVINACAGLLDFEMAKSIHDRVLXMGFGSDLYI 211

Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
            N LI  Y +  ++D A  VFEEM  LRDVVSWN++I GY  NG+   AL +Y++    G
Sbjct: 212 GNALIDMYCRFNDLDKARKVFEEMP-LRDVVSWNSLISGYNANGYWNEALEIYYRFRNLG 270

Query: 451 EVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVK 488
            VPDS T  S+L ACG  G   +G +I + +IE+  +K
Sbjct: 271 VVPDSYTMSSVLRACGGLGSVEEGDII-HGLIEKIGIK 307


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  297 bits (761), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 185/617 (29%), Positives = 310/617 (50%), Gaps = 58/617 (9%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D    +KL+  Y   G + +   +FD+I    V  W++++  Y+  G   +S+  F  M
Sbjct: 127 VDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKM 186

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
              G++ N +T   VL   A L  ++  + +HG ++K G  S+                 
Sbjct: 187 QKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGV 246

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                LF+ L  P +VS N+++ G + N      + +F      G+  +  T+++V+  C
Sbjct: 247 ESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAC 306

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             +G+ +L   +HG  +K     +V  +N++LDMYS   +L+ A ++F +M    ++SWT
Sbjct: 307 ANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWT 366

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++  +V      DA+ +F EM+   +  D   + +++   A    L +G+ +H+ V+  
Sbjct: 367 SIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKN 426

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           G+ S L ++N++I MY+KCG ++ +R VF++I  K +VSW  +I GY QN    EAL  F
Sbjct: 427 GMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELF 486

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
           + M  +K    D IT+  +L A   LAAL+   ++HG     G+     V   L+  Y+K
Sbjct: 487 LDM--QKQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAK 544

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CG + LA ++F +M   +D++SW  +I GYG++G G  A++ +++M   G  PD S++ +
Sbjct: 545 CGLLVLAQLLF-DMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSA 603

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           ILNAC H+GL N+G   FN M  E  V+P  EHY CVVDLLAR G LS A      +   
Sbjct: 604 ILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIK 663

Query: 521 MGPNIWRALLSGCVLH---------------------------------VGRFQDAEALR 547
               IW  LLSGC +H                                   ++++ + LR
Sbjct: 664 PDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLR 723

Query: 548 SGSQKKGIIKIPGISFL 564
              QK+G  + PG S++
Sbjct: 724 KRMQKRGFKQNPGCSWI 740



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 163/584 (27%), Positives = 275/584 (47%), Gaps = 64/584 (10%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKN-------VVSWSIVIHGYSINGFHE 53
           P   PY++ K  SNY    K      +F + P +         VS S     +S+     
Sbjct: 9   PISSPYHTHKTTSNY---AKKSHNRFIFFKQPRRTCLLHSTVCVSPSFTNTTHSVTQNQN 65

Query: 54  KSMKAFSHMMLSGLLPNSFTMV--------------GVLVAAAGLQNLELARSIHGLMVK 99
             +  F  M   G L N+  ++               VL   A  ++LE  + +H +++ 
Sbjct: 66  AKINKFCEM---GDLRNAIELLTKSKSYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIIS 122

Query: 100 FGLESDLFEGLKNPYL-VSCNAIVAG------FINNKL---------------FQQAVLL 137
            G+  D   G K  ++ V+C  +V G       +N+K+               F+++V L
Sbjct: 123 NGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSL 182

Query: 138 FNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSC 197
           F   +  G+V N  T   V++   ALG    C+ +HG  +KLG   + +V NS++  Y  
Sbjct: 183 FKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFK 242

Query: 198 LMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNL 257
              +++A  +F E+   DV+SW  M+   V   ++G+ L+IF +M    +  D   L+++
Sbjct: 243 FGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSV 302

Query: 258 ISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSL 317
           +   A +G+L  G+ LH   V      E+  SN+++ MYSKCG+L+ +  VF ++ + ++
Sbjct: 303 LVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTI 362

Query: 318 VSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHG 377
           VSWT+II+ YV+ G   +A+  F +M Q K    D  T+ SI+ A    ++L+    +H 
Sbjct: 363 VSWTSIIAAYVREGLYSDAIGLFDEM-QSKGVRPDIYTVTSIVHACACSSSLDKGRDVHS 421

Query: 378 IAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGE 437
              + G      V N LI+ Y+KCG+V+ A +VF ++  ++D+VSWNT+I GY  N    
Sbjct: 422 YVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIP-VKDIVSWNTMIGGYSQNLLPN 480

Query: 438 TALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGC- 496
            AL L+  M +  + PD  T   +L AC      + G  I   ++       S  H  C 
Sbjct: 481 EALELFLDMQKQFK-PDDITMACVLPACAGLAALDKGREIHGHILRRGYF--SDLHVACA 537

Query: 497 VVDLLARAGCLSDASGLAGKLLEGMGPNI----WRALLSGCVLH 536
           +VD+ A+ G L     +  +LL  M P      W  +++G  +H
Sbjct: 538 LVDMYAKCGLL-----VLAQLLFDMIPKKDLISWTVMIAGYGMH 576


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  297 bits (761), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 164/553 (29%), Positives = 297/553 (53%), Gaps = 24/553 (4%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y  + L+  Y   G + EA  +FD +  K VV+W+ +I GY+  G  +++   F  M+  
Sbjct: 93  YELNTLIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDE 152

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-------------------- 105
           GL P+  T + VL A +    L   + +H  +V  G  SD                    
Sbjct: 153 GLEPSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDA 212

Query: 106 --LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
             +F+GL    + + N +V G+  +  +++A  LF   +  GL PN ++ L+++ GC   
Sbjct: 213 RQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTP 272

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
            + A  + +H   +  GL+ D+ V  S++ MY+    ++ A ++F  M+ +DV+SWT M+
Sbjct: 273 EALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMI 332

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
             + +     DA  +F  M++  I  D +  +++++  AI  +L   +++H+QV + G  
Sbjct: 333 EGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFG 392

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
           ++L +S +++ MY+KCG +  +R VF+ +  + +VSW+A+I  YV+NG   EA   F  M
Sbjct: 393 TDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLM 452

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
           ++   +  D +T +++L A G L AL++ ++++  A +A    +  + N LI   +K G+
Sbjct: 453 KRSNIEP-DGVTYINLLNACGHLGALDVGMEIYTQAIKADLVSHVPLGNALIIMNAKHGS 511

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           V+ A  +F+ M   RDV++WN +I GY ++G+   AL L+ +M +    P+S T++ +L+
Sbjct: 512 VERARYIFDTM-VRRDVITWNAMIGGYSLHGNAREALYLFDRMLKERFRPNSVTFVGVLS 570

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
           AC  AG  ++G   F  ++E   + P+ + YGC+VDLL RAG L +A  L   +      
Sbjct: 571 ACSRAGFVDEGRRFFTYLLEGRGIVPTVKLYGCMVDLLGRAGELDEAELLIKSMPVKPTS 630

Query: 524 NIWRALLSGCVLH 536
           +IW +LL  C +H
Sbjct: 631 SIWSSLLVACRIH 643



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 111/454 (24%), Positives = 220/454 (48%), Gaps = 24/454 (5%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + L+S Y K G + +A  +FD +  ++V ++++++ GY+ +G  EK+ + F  M   GL 
Sbjct: 197 TALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLK 256

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------------- 106
           PN  + + +L      + L   +++H   +  GL  D+                      
Sbjct: 257 PNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRV 316

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           F+ +K   +VS   ++ G+  N   + A  LF   +  G+ P+ +T + ++  C    + 
Sbjct: 317 FDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANL 376

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
                IH      G   D+ V+ +++ MY+    +  A Q+F  M  +DV+SW+ M+G +
Sbjct: 377 NHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAY 436

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
           V+  Y  +A + F  M++S I  D V  +NL++    LG L  G +++ Q +   L S +
Sbjct: 437 VENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKADLVSHV 496

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            L N++I M +K G ++ +R +F+ +  + +++W A+I GY  +G AREAL  F +M +E
Sbjct: 497 PLGNALIIMNAKHGSVERARYIFDTMVRRDVITWNAMIGGYSLHGNAREALYLFDRMLKE 556

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEA-GFPRYRSVQNCLISSYSKCGNVD 405
           +    +S+T V +L+A      ++   +      E  G      +  C++    + G +D
Sbjct: 557 RFRP-NSVTFVGVLSACSRAGFVDEGRRFFTYLLEGRGIVPTVKLYGCMVDLLGRAGELD 615

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETA 439
            A ++ + M        W++++    ++G+ + A
Sbjct: 616 EAELLIKSMPVKPTSSIWSSLLVACRIHGNLDVA 649



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 97/333 (29%), Positives = 170/333 (51%), Gaps = 2/333 (0%)

Query: 149 NAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIF 208
           ++ T + + + C  L   AL + +    I+ G  L++   N+++ +YS   ++  A QIF
Sbjct: 56  DSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIF 115

Query: 209 REMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLK 268
             +E K V++W  ++  +    +  +A  +FR+M    +    +  L+++   +    L 
Sbjct: 116 DSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLN 175

Query: 269 RGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYV 328
            GK++HAQVV  G  S+ R+  ++++MY K G +D +R VF+ +  + + ++  ++ GY 
Sbjct: 176 WGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYA 235

Query: 329 QNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYR 388
           ++G   +A   F +M+Q      + I+ +SIL       AL     +H     AG     
Sbjct: 236 KSGDWEKAFELFYRMQQVGLKP-NKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDI 294

Query: 389 SVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTE 448
            V   LI  Y+ CG+++ A  VF+ M  +RDVVSW  +I GY  NG+ E A  L+  M E
Sbjct: 295 RVATSLIRMYTTCGSIEGARRVFDNMK-VRDVVSWTVMIEGYAENGNIEDAFGLFATMQE 353

Query: 449 TGEVPDSSTYLSILNACGHAGLTNDGLVIFNQM 481
            G  PD  TY+ I+NAC  +   N    I +Q+
Sbjct: 354 EGIQPDRITYMHIMNACAISANLNHAREIHSQV 386


>gi|449488546|ref|XP_004158080.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 186/616 (30%), Positives = 308/616 (50%), Gaps = 57/616 (9%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  S L+  Y ++G + +A+ LFD IP+K+ V W+++++GY  NG    ++K F  M 
Sbjct: 92  DVFVGSSLIKLYAENGHLSDAQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMR 151

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
            S + PNS T   VL   A    L+L   +HG+ V  GLE D                  
Sbjct: 152 HSEIKPNSVTFACVLSVCASEAMLDLGTQLHGIAVGCGLELDSPVANTLLAMYSKCQCLQ 211

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               LF+ L    LVS N I++G++ N L  +A  LF     +G+ P+++T  + +    
Sbjct: 212 AARKLFDTLPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVN 271

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            L S   C+ IHG  I+  ++LDV + ++++D+Y    D++ A +   +    D +  T 
Sbjct: 272 ELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKNLCQSSSFDTVVCTT 331

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+  +V      +AL+ FR + + R+   +V   ++    A L  L  GK+LH  ++   
Sbjct: 332 MISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTK 391

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           L  +  + ++I+ MY+KCG LD +  VFN+ITEK  + W ++I+   QNG   EA+N F 
Sbjct: 392 LDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFR 451

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +M  E T   D +++   L+A   L AL    ++HG+  +         ++ LI  Y+KC
Sbjct: 452 QMGMEGT-RYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKC 510

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           GN++ +  VF+ M   ++ VSWN+II  YG +G  +  LAL+H+M   G  PD  T+L I
Sbjct: 511 GNLNFSRRVFDRMQ-EKNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGI 569

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           ++ACGHAG  ++G+  ++ M EE  +    EHY CV D+  RAG L +A      +    
Sbjct: 570 ISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLHEAFETINSMPFPP 629

Query: 522 GPNIWRALLSGCVLH---------------------------------VGRFQDAEALRS 548
              +W  LL  C +H                                  G+++    +RS
Sbjct: 630 DAGVWGTLLGACHIHGNVELAEVASKHLFDLDPLNSGYYVLLANVQAGAGKWRKVLKVRS 689

Query: 549 GSQKKGIIKIPGISFL 564
             +++G+ K+PG S++
Sbjct: 690 IMKERGVRKVPGYSWI 705



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 128/460 (27%), Positives = 225/460 (48%), Gaps = 24/460 (5%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D   ++ LL+ Y K   ++ A  LFD +P+ ++VSW+ +I GY  NG   ++   F  M
Sbjct: 192 LDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISGYVQNGLMGEAEHLFRGM 251

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPYL----- 115
           + +G+ P+S T    L     L +L+  + IHG +++  +  D+F    L + Y      
Sbjct: 252 ISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDV 311

Query: 116 ---------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                          V C  +++G++ N   ++A+  F +     + P +VT  ++    
Sbjct: 312 EMAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAF 371

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             L +  L + +HG  IK  L     V +++LDMY+    LD A ++F  +  KD I W 
Sbjct: 372 AGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWN 431

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+         G+A+ +FR+M       D V++   +S  A L  L  GK++H  ++ G
Sbjct: 432 SMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKG 491

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
            L+S+L   +S+I MY+KCG+L+ SR VF+++ EK+ VSW +IIS Y  +G  +E L  F
Sbjct: 492 PLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQEKNEVSWNSIISAYGNHGDLKECLALF 551

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQ-LHGIAFEAGFPRYRSVQNCLISSYS 399
            +M +      D +T + I++A G    ++  ++  H +  E G P       C+   + 
Sbjct: 552 HEMLRNGIQP-DHVTFLGIISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMFG 610

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETA 439
           + G +  A+     M F  D   W T++    ++G+ E A
Sbjct: 611 RAGRLHEAFETINSMPFPPDAGVWGTLLGACHIHGNVELA 650



 Score =  191 bits (486), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 140/516 (27%), Positives = 252/516 (48%), Gaps = 25/516 (4%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTM 74
           Y ++G +K+A+NLF  +      +W+ +I G+++ G    ++  +  M+ +G+ P+ +T 
Sbjct: 2   YVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTF 61

Query: 75  VGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG-------LKNPYL------------ 115
             V+ A  GL+++++ + +H  +   GL+ D+F G        +N +L            
Sbjct: 62  PYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQ 121

Query: 116 ---VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELI 172
              V  N ++ G++ N     A+ +F   R S + PN+VT   V+  C +     L   +
Sbjct: 122 KDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQL 181

Query: 173 HGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYA 232
           HG+ +  GL LD  V N++L MYS    L AA ++F  +   D++SW  ++  +V     
Sbjct: 182 HGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISGYVQNGLM 241

Query: 233 GDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSI 292
           G+A  +FR M  + I  D++   + +     L  LK  K++H  ++   +  ++ L +++
Sbjct: 242 GEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSAL 301

Query: 293 IAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVD 352
           I +Y KC D++ ++    Q +    V  T +ISGYV NG  +EAL  F  + QE+     
Sbjct: 302 IDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPT- 360

Query: 353 SITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFE 412
           S+T  SI  A   LAAL +  +LHG   +        V + ++  Y+KCG +DLA  VF 
Sbjct: 361 SVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFN 420

Query: 413 EMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTN 472
            +   +D + WN++I     NG    A+ L+ +M   G   D  +    L+AC +    +
Sbjct: 421 RIT-EKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALH 479

Query: 473 DGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLS 508
            G  I   MI +  ++        ++D+ A+ G L+
Sbjct: 480 YGKEIHGLMI-KGPLRSDLYAESSLIDMYAKCGNLN 514



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 133/432 (30%), Positives = 215/432 (49%), Gaps = 10/432 (2%)

Query: 105 DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
           +LF  L+     + N ++ GF     F  A+L +    G+G+ P+  T   V++ C  L 
Sbjct: 13  NLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTFPYVVKACCGLK 72

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
           S  + +++H     +GL  DV V +S++ +Y+    L  A  +F  +  KD + W  M+ 
Sbjct: 73  SVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQKDSVLWNVMLN 132

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            +V    +G+A+KIF EMR S I  ++V    ++SV A    L  G QLH   V  GL+ 
Sbjct: 133 GYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQLHGIAVGCGLEL 192

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           +  ++N+++AMYSKC  L ++R +F+ + +  LVSW  IISGYVQNG   EA + F  M 
Sbjct: 193 DSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMI 252

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
                  DSIT  S L    EL +L+ C ++HG            +++ LI  Y KC +V
Sbjct: 253 SAGIKP-DSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDV 311

Query: 405 DLAYI-VFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           ++A   + +   F  D V   T+I GY +NG  + AL  +  + +    P S T+ SI  
Sbjct: 312 EMAQKNLCQSSSF--DTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFP 369

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQE-HYG-CVVDLLARAGCLSDASGLAGKLLEGM 521
           A       N G  +   +I   K K  ++ H G  ++D+ A+ G L  A  +  ++ E  
Sbjct: 370 AFAGLAALNLGKELHGSII---KTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITE-K 425

Query: 522 GPNIWRALLSGC 533
               W ++++ C
Sbjct: 426 DAICWNSMITSC 437



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/269 (30%), Positives = 133/269 (49%), Gaps = 2/269 (0%)

Query: 194 MYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVA 253
           MY     L  A  +F  ++     +W  M+  F        AL  + +M  + +  D   
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 254 LLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT 313
              ++     L  +K GK +H  V L GL+ ++ + +S+I +Y++ G L  ++ +F+ I 
Sbjct: 61  FPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIP 120

Query: 314 EKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICL 373
           +K  V W  +++GYV+NG +  A+  F++MR  +    +S+T   +L+     A L++  
Sbjct: 121 QKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKP-NSVTFACVLSVCASEAMLDLGT 179

Query: 374 QLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVN 433
           QLHGIA   G      V N L++ YSKC  +  A  +F+ +    D+VSWN II GY  N
Sbjct: 180 QLHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLP-QSDLVSWNGIISGYVQN 238

Query: 434 GHGETALALYHKMTETGEVPDSSTYLSIL 462
           G    A  L+  M   G  PDS T+ S L
Sbjct: 239 GLMGEAEHLFRGMISAGIKPDSITFASFL 267


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 173/556 (31%), Positives = 294/556 (52%), Gaps = 28/556 (5%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L++ Y + G +  AE +F ++  ++ +S++ +I G +  GF +++++ F  M L  + P+
Sbjct: 254 LVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPD 313

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF-EGLKNPYLVSC----------- 118
             T+  +L A A +      + +H  ++K G+ SDL  EG      V C           
Sbjct: 314 CVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFL 373

Query: 119 ----------NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
                     N ++  +       ++  +F   +  GL+PN  T  +++R C +LG+  L
Sbjct: 374 TTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDL 433

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
            E IH   IK G   +V V + ++DMY+   +LD A  I + +  +DV+SWT M+  +  
Sbjct: 434 GEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQ 493

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
            +   +ALK+F+EM    I  D +   + IS  A +  L +G+Q+HAQ  + G   +L +
Sbjct: 494 HDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSI 553

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
            N+++++Y++CG    +   F +I  K  +SW A+ISG+ Q+G   EAL  F +M Q   
Sbjct: 554 GNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAGV 613

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
           ++ +  T  S ++A+   A ++   Q+H +  + G+       N LI+ YSKCG+++ A 
Sbjct: 614 EA-NLFTFGSAVSATANTANIKQGKQIHAMMIKTGYDSETEASNVLITLYSKCGSIEDAK 672

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
             F EM   ++VVSWN +I GY  +G+G  A++L+ +M + G +P+  T++ +L+AC H 
Sbjct: 673 REFFEMP-EKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHV 731

Query: 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRA 528
           GL N+GL  F  M +E+ + P  EHY CVVDLL RA  L  A     ++       IWR 
Sbjct: 732 GLVNEGLSYFRSMSKEHGLVPKPEHYVCVVDLLGRAALLCCAREFIEEMPIEPDAMIWRT 791

Query: 529 LLSGCVLH----VGRF 540
           LLS C +H    +G F
Sbjct: 792 LLSACTVHKNIEIGEF 807



 Score =  233 bits (593), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 147/556 (26%), Positives = 278/556 (50%), Gaps = 30/556 (5%)

Query: 5   PYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML 64
           P   + L+  Y K+G +  A+ +F+ +  K+ VSW  +I G S NG  ++++  F  M  
Sbjct: 147 PLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHK 206

Query: 65  SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------- 105
           S ++P  +    VL A   ++  +L   +HG +VK+GL S+                   
Sbjct: 207 SAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIA 266

Query: 106 ---LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA 162
              +F  +     +S N++++G        +A+ LF   +   + P+ VT+ +++  C +
Sbjct: 267 AEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACAS 326

Query: 163 LGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
           +G+    + +H   IK+G+  D+ +  S+LD+Y    D++ A + F   E ++V+ W  M
Sbjct: 327 VGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVM 386

Query: 223 MGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL 282
           +  +       ++  IF +M+   ++ +     +++     LG L  G+Q+H QV+  G 
Sbjct: 387 LVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGF 446

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
           Q  + + + +I MY+K G+LD++R +  ++ E+ +VSWTA+I+GY Q+    EAL  F +
Sbjct: 447 QFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQE 506

Query: 343 MRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
           M  +   S D+I   S ++A   + AL    Q+H  ++ +G+    S+ N L+S Y++CG
Sbjct: 507 MENQGIRS-DNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNALVSLYARCG 565

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
               AY+ FE++   +D +SWN +I G+  +GH E AL ++ +M + G   +  T+ S +
Sbjct: 566 RAQDAYLAFEKID-AKDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAV 624

Query: 463 NACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMG 522
           +A  +      G  I   MI+        E    ++ L ++ G + DA     +  E   
Sbjct: 625 SATANTANIKQGKQIHAMMIKTG-YDSETEASNVLITLYSKCGSIEDAK---REFFEMPE 680

Query: 523 PNI--WRALLSGCVLH 536
            N+  W A+++G   H
Sbjct: 681 KNVVSWNAMITGYSQH 696



 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 154/550 (28%), Positives = 257/550 (46%), Gaps = 33/550 (6%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           S+L+  Y   G++  A  LFD+IP  NV  W+ VI G        + +  FS M+   + 
Sbjct: 49  SRLIDIYLAHGEVDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVT 108

Query: 69  PNSFTMVGVLVAAAGLQ-NLELARSIHGLMVKFGLESD---------------------- 105
           P+  T   VL A +G +   ++   IH  ++  G  S                       
Sbjct: 109 PDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKL 168

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +FE L     VS  A+++G   N    +A+LLF     S ++P      +V+  C  +  
Sbjct: 169 VFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIEL 228

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
             L E +HG  +K GL  +  V N+++ +YS   +L AA QIF +M  +D IS+  ++  
Sbjct: 229 FKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISG 288

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
                ++  AL++F +M+   +  D V + +L+S  A +G   +GKQLH+ V+  G+ S+
Sbjct: 289 LAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSD 348

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           L +  S++ +Y KC D++++   F     +++V W  ++  Y Q G   E+   F++M+ 
Sbjct: 349 LIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQI 408

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
           E     +  T  SIL     L AL++  Q+H    ++GF     V + LI  Y+K G +D
Sbjct: 409 EGL-MPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELD 467

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            A  + + +    DVVSW  +I GY  +     AL L+ +M   G   D+  + S ++AC
Sbjct: 468 TARGILQRLR-EEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISAC 526

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYG---CVVDLLARAGCLSDASGLAGKLLEGMG 522
                 N G     Q+  ++ +    E       +V L AR G   DA  LA + ++   
Sbjct: 527 AGIQALNQG----QQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAY-LAFEKIDAKD 581

Query: 523 PNIWRALLSG 532
              W AL+SG
Sbjct: 582 NISWNALISG 591



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 166/340 (48%), Gaps = 3/340 (0%)

Query: 145 GLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAA 204
           G+  N  T L +  GC   GS    + +H    K G   +  + + ++D+Y    ++D A
Sbjct: 5   GIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNA 64

Query: 205 IQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLI-SVNAI 263
           I++F ++   +V  W +++   +  + A   L +F  M    +  D     +++ + +  
Sbjct: 65  IKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGG 124

Query: 264 LGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAI 323
               +  +Q+HA+++  G  S   + N +I +YSK G +D ++ VF ++  K  VSW A+
Sbjct: 125 KAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAM 184

Query: 324 ISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG 383
           ISG  QNG   EA+  F +M +        +   S+L+A  ++   ++  QLHG   + G
Sbjct: 185 ISGLSQNGREDEAILLFCQMHKSAVIPTPYV-FSSVLSACTKIELFKLGEQLHGFIVKWG 243

Query: 384 FPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALY 443
                 V N L++ YS+ GN+  A  +F +M   RD +S+N++I G    G  + AL L+
Sbjct: 244 LSSETFVCNALVTLYSRWGNLIAAEQIFSKM-HRRDRISYNSLISGLAQRGFSDRALQLF 302

Query: 444 HKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIE 483
            KM      PD  T  S+L+AC   G    G  + + +I+
Sbjct: 303 EKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIK 342



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/256 (32%), Positives = 127/256 (49%), Gaps = 8/256 (3%)

Query: 265 GDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAII 324
           G L   K+LHA++   G   E  L + +I +Y   G++D++  +F+ I   ++  W  +I
Sbjct: 24  GSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDDIPSSNVSFWNKVI 83

Query: 325 SGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTA-SGELAALEICLQLHGIAFEAG 383
           SG +    A + L  F  M  E   + D  T  S+L A SG  A  ++  Q+H      G
Sbjct: 84  SGLLAKKLASQVLGLFSLMITENV-TPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHG 142

Query: 384 FPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALY 443
           F     V N LI  YSK G+VDLA +VFE + FL+D VSW  +I G   NG  + A+ L+
Sbjct: 143 FGSSPLVCNPLIDLYSKNGHVDLAKLVFERL-FLKDSVSWVAMISGLSQNGREDEAILLF 201

Query: 444 HKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGC--VVDLL 501
            +M ++  +P    + S+L+AC    L   G  +   ++   K   S E + C  +V L 
Sbjct: 202 CQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIV---KWGLSSETFVCNALVTLY 258

Query: 502 ARAGCLSDASGLAGKL 517
           +R G L  A  +  K+
Sbjct: 259 SRWGNLIAAEQIFSKM 274



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/99 (44%), Positives = 62/99 (62%), Gaps = 7/99 (7%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ L++ Y K G I++A+  F E+PEKNVVSW+ +I GYS +G+  +++  F  M   GL
Sbjct: 655 SNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGL 714

Query: 68  LPNSFTMVGVLVAAA--GLQN--LELARSI---HGLMVK 99
           +PN  T VGVL A +  GL N  L   RS+   HGL+ K
Sbjct: 715 MPNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVPK 753


>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 175/548 (31%), Positives = 291/548 (53%), Gaps = 26/548 (4%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           LLS + + G + +A  +F ++ E++V SW++++ GY+  G  ++++  +  M+ + + PN
Sbjct: 138 LLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPN 197

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFE 108
            +T   VL   AG+ ++   + IH  +++FG ESD                      LF+
Sbjct: 198 VYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFD 257

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            +     +S NA+++G+  N    + + LF+  R   + P+ +TM TV   C  L +  L
Sbjct: 258 KMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERL 317

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
              +HG  +K     D+S+NNS++ MYS L  L+ A  +F  ME KDV+SWT M+   V 
Sbjct: 318 GRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVS 377

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
            +    A++ ++ M    I+ D + L++++S  A +G L  G +LH   +  GL S + +
Sbjct: 378 HKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIV 437

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
           SNS+I MYSKC  +D++  VF  I+ K++VSWT++I G   N  + EAL  F +M++   
Sbjct: 438 SNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKESMK 497

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
              +S+TL+S+L+A   + AL    ++H  A   G      + N ++  Y +CG    A 
Sbjct: 498 P--NSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPAL 555

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
             F      +DV +WN ++ GY   G  + A+ L+ KM E    PD  T++S+L AC  +
Sbjct: 556 NQFNSQK--KDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKS 613

Query: 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRA 528
           G+  +GL  FN M  +  + P+ +HY CVVD+L RAG L DA      +       IW A
Sbjct: 614 GMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGA 673

Query: 529 LLSGCVLH 536
           LL+ C +H
Sbjct: 674 LLNACRIH 681


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 163/553 (29%), Positives = 296/553 (53%), Gaps = 24/553 (4%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y  + L+  +   G + EA   FD +  K VV+W+ +I GY+  G  +++   F  M+  
Sbjct: 97  YELNTLIKLHSICGNMLEARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDE 156

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-------------------- 105
            + P+  T + VL A +    L+L +  H  ++K G  SD                    
Sbjct: 157 AMEPSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGA 216

Query: 106 --LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
             +F+GL    + + N ++ G+  +   ++A  LF   +  G  PN ++ L+++ GC   
Sbjct: 217 RQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTP 276

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
            + A  + +H   +  GL+ DV V  +++ MY     ++ A ++F +M+ +DV+SWT M+
Sbjct: 277 EALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMI 336

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
             + +     DA  +F  M++  I  D +  +++I+  A   DL   +++H+QVV  G  
Sbjct: 337 RGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFG 396

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
           ++L +  +++ MY+KCG +  +R VF+ ++ + +VSW+A+I  YV+NGC  EA   F  M
Sbjct: 397 TDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLM 456

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
           ++   +  D +T +++L A G L AL++ ++++  A +A    +  V N LI+   K G+
Sbjct: 457 KRNNVEP-DVVTYINLLNACGHLGALDLGMEIYTQAIKADLVSHIPVGNALINMNVKHGS 515

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           ++ A  +FE M   RDVV+WN +I GY ++G+   AL L+ +M +    P+S T++ +L+
Sbjct: 516 IERARYIFENM-VQRDVVTWNVMIGGYSLHGNAREALDLFDRMLKERFRPNSVTFVGVLS 574

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
           AC  AG   +G   F+ +++   + P+ E YGC+VDLL RAG L +A  L  ++      
Sbjct: 575 ACSRAGFVEEGRRFFSYLLDGRGIVPTMELYGCMVDLLGRAGELDEAELLINRMPLKPNS 634

Query: 524 NIWRALLSGCVLH 536
           +IW  LL+ C ++
Sbjct: 635 SIWSTLLAACRIY 647



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 120/512 (23%), Positives = 244/512 (47%), Gaps = 29/512 (5%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + L+S Y K G +  A  +FD + +++V +++++I GY+ +G  EK+ + F  M   G  
Sbjct: 201 TALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFK 260

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------------- 106
           PN  + + +L   +  + L   +++H   +  GL  D+                      
Sbjct: 261 PNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRV 320

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           F+ +K   +VS   ++ G+  N   + A  LF   +  G+ P+ +T + +I  C +    
Sbjct: 321 FDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADL 380

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
           +L   IH   ++ G   D+ V+ +++ MY+    +  A Q+F  M  +DV+SW+ M+G +
Sbjct: 381 SLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAY 440

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
           V+     +A + F  M+++ +  D V  +NL++    LG L  G +++ Q +   L S +
Sbjct: 441 VENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVSHI 500

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            + N++I M  K G ++ +R +F  + ++ +V+W  +I GY  +G AREAL+ F +M +E
Sbjct: 501 PVGNALINMNVKHGSIERARYIFENMVQRDVVTWNVMIGGYSLHGNAREALDLFDRMLKE 560

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEA-GFPRYRSVQNCLISSYSKCGNVD 405
           +    +S+T V +L+A      +E   +      +  G      +  C++    + G +D
Sbjct: 561 RFRP-NSVTFVGVLSACSRAGFVEEGRRFFSYLLDGRGIVPTMELYGCMVDLLGRAGELD 619

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            A ++   M    +   W+T++    + G+ + A     +   + E  D + Y+ + +  
Sbjct: 620 EAELLINRMPLKPNSSIWSTLLAACRIYGNLDVAERAAERCLMS-EPYDGAVYVQLSHMY 678

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCV 497
             AG+  + +    +++E   V+  Q   GC 
Sbjct: 679 AAAGMWEN-VAKVRKVMESRGVRKEQ---GCT 706



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 162/318 (50%), Gaps = 2/318 (0%)

Query: 149 NAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIF 208
           ++ T + + + C+ L    L + +    I+ G  L++   N+++ ++S   ++  A Q F
Sbjct: 60  DSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTF 119

Query: 209 REMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLK 268
             +E K V++W  ++  +    +  +A  +FR+M    +    +  L ++   +    LK
Sbjct: 120 DSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLK 179

Query: 269 RGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYV 328
            GK+ HAQV+  G  S+ R+  ++++MY K G +D +R VF+ + ++ + ++  +I GY 
Sbjct: 180 LGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYA 239

Query: 329 QNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYR 388
           ++G   +A   F +M+QE     + I+ +SIL       AL     +H      G     
Sbjct: 240 KSGDGEKAFQLFYRMQQEGFKP-NRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDV 298

Query: 389 SVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTE 448
            V   LI  Y  CG+++ A  VF++M  +RDVVSW  +I GY  N + E A  L+  M E
Sbjct: 299 RVATALIRMYMGCGSIEGARRVFDKMK-VRDVVSWTVMIRGYAENSNIEDAFGLFATMQE 357

Query: 449 TGEVPDSSTYLSILNACG 466
            G  PD  TY+ I+NAC 
Sbjct: 358 EGIQPDRITYIHIINACA 375



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 123/238 (51%), Gaps = 13/238 (5%)

Query: 250 DTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVF 309
           D+   + L     +L D   GKQ+   ++  G Q  +   N++I ++S CG++  +R  F
Sbjct: 60  DSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTF 119

Query: 310 NQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAAL 369
           + +  K++V+W AII+GY Q G  +EA   F +M  E  +    IT + +L A    A L
Sbjct: 120 DSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEP-SIITFLIVLDACSSPAGL 178

Query: 370 EICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYG 429
           ++  + H    + GF     +   L+S Y K G++D A  VF+ + + RDV ++N +I G
Sbjct: 179 KLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGL-YKRDVSTFNVMIGG 237

Query: 430 YGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG-----------HAGLTNDGLV 476
           Y  +G GE A  L+++M + G  P+  ++LSIL+ C            HA   N GLV
Sbjct: 238 YAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLV 295


>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 175/548 (31%), Positives = 291/548 (53%), Gaps = 26/548 (4%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           LLS + + G + +A  +F ++ E++V SW++++ GY+  G  ++++  +  M+ + + PN
Sbjct: 138 LLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPN 197

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFE 108
            +T   VL   AG+ ++   + IH  +++FG ESD                      LF+
Sbjct: 198 VYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFD 257

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            +     +S NA+++G+  N    + + LF+  R   + P+ +TM TV   C  L +  L
Sbjct: 258 KMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERL 317

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
              +HG  +K     D+S+NNS++ MYS L  L+ A  +F  ME KDV+SWT M+   V 
Sbjct: 318 GRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVS 377

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
            +    A++ ++ M    I+ D + L++++S  A +G L  G +LH   +  GL S + +
Sbjct: 378 HKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIV 437

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
           SNS+I MYSKC  +D++  VF  I+ K++VSWT++I G   N  + EAL  F +M++   
Sbjct: 438 SNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKESMK 497

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
              +S+TL+S+L+A   + AL    ++H  A   G      + N ++  Y +CG    A 
Sbjct: 498 P--NSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPAL 555

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
             F      +DV +WN ++ GY   G  + A+ L+ KM E    PD  T++S+L AC  +
Sbjct: 556 NQFNSQK--KDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKS 613

Query: 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRA 528
           G+  +GL  FN M  +  + P+ +HY CVVD+L RAG L DA      +       IW A
Sbjct: 614 GMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGA 673

Query: 529 LLSGCVLH 536
           LL+ C +H
Sbjct: 674 LLNACRIH 681


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 185/612 (30%), Positives = 311/612 (50%), Gaps = 60/612 (9%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+  Y KSG I +A  +FD + E+++ SW+++I G + +G  +++   F  M   G LPN
Sbjct: 172 LVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPN 231

Query: 71  SFTMVGVLVAAA--GLQNLELARSIHGLMVKFGLESDL---------------------- 106
             T + +L A+A      LE  + +H    K G  SDL                      
Sbjct: 232 LTTYLSILNASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLV 291

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           F+G+ +  ++S NA++ G   N    +A  +F   +  G VP++ T L+++   V+ G+ 
Sbjct: 292 FDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAW 351

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
              + +H   +++GL+ D+ V ++ + MY     +D A  IF ++  ++V +W  M+G  
Sbjct: 352 EWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGV 411

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
              +   +AL +F +MR+     D    +N++S N     L+  K++H+  +  GL  +L
Sbjct: 412 AQQKCGREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAIDAGL-VDL 470

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
           R+ N+++ MY+KCG+   ++ VF+ + E+++ +WT +ISG  Q+GC  EA + F++M +E
Sbjct: 471 RVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLRE 530

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
                D+ T VSIL+A     ALE   ++H  A  AG      V N L+  Y+KCG+VD 
Sbjct: 531 GI-VPDATTYVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDD 589

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           A  VF++M   RDV SW  +I G   +G G  AL L+ KM   G  P+  +++++L+AC 
Sbjct: 590 ARRVFDDM-LERDVYSWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACS 648

Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIW 526
           HAGL ++G   F  + ++  ++P+ EHY C+VDLL RAG L +A      +    G   W
Sbjct: 649 HAGLVDEGRRQFLSLTQDYGIEPTMEHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDAPW 708

Query: 527 RALLSGCVLH---------------------------------VGRFQDAEALRSGSQKK 553
            ALL  CV +                                  G ++    +RS  Q++
Sbjct: 709 GALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGNWEQKLLVRSMMQRR 768

Query: 554 GIIKIPGISFLN 565
           GI K PG S++ 
Sbjct: 769 GIRKEPGRSWIE 780



 Score =  258 bits (658), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 177/581 (30%), Positives = 293/581 (50%), Gaps = 33/581 (5%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + L++ Y K G I +A+ +FD++ E+NV+SW+++I G +  G  +++   F  M   G +
Sbjct: 69  TALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFI 128

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------------- 106
           PNS+T V +L A A    LE  + +H   V  GL  DL                      
Sbjct: 129 PNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVV 188

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           F+G+    + S   ++ G   +   Q+A  LF      G +PN  T L+++       + 
Sbjct: 189 FDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTG 248

Query: 167 AL--CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
           AL   + +H    K G I D+ V N+++ MY+    +D A  +F  M  +DVISW  M+G
Sbjct: 249 ALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIG 308

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
                    +A  IF +M++   + D+   L+L++ +   G  +  K++H   V  GL S
Sbjct: 309 GLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVS 368

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           +LR+ ++ + MY +CG +D ++ +F+++  +++ +W A+I G  Q  C REAL+ F++MR
Sbjct: 369 DLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMR 428

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
           +E     D+ T V+IL+A+    ALE   ++H  A +AG    R V N L+  Y+KCGN 
Sbjct: 429 REGFFP-DATTFVNILSANVGEEALEWVKEVHSYAIDAGLVDLR-VGNALVHMYAKCGNT 486

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
             A  VF++M   R+V +W  +I G   +G G  A +L+ +M   G VPD++TY+SIL+A
Sbjct: 487 MYAKQVFDDM-VERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSA 545

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYG-CVVDLLARAGCLSDASGLAGKLLEGMGP 523
           C   G       + +  +    V  S    G  +V + A+ G + DA  +   +LE    
Sbjct: 546 CASTGALEWVKEVHSHAVNAGLV--SDLRVGNALVHMYAKCGSVDDARRVFDDMLE-RDV 602

Query: 524 NIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFL 564
             W  ++ G   H GR  DA  L    + +G  K  G SF+
Sbjct: 603 YSWTVMIGGLAQH-GRGLDALDLFVKMKLEG-FKPNGYSFV 641



 Score =  222 bits (565), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 150/553 (27%), Positives = 269/553 (48%), Gaps = 68/553 (12%)

Query: 42  VIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG 101
           +I GY+  G+ E +MK +S M   G  PN  T + +L A     +L+  + IH  +++ G
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 102 LESD----------------------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFN 139
            +SD                      +F+ +    ++S   ++ G  +    Q+A   F 
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120

Query: 140 FFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLM 199
             +  G +PN+ T ++++    + G+    + +H   +  GL LD+ V N+++ MY+   
Sbjct: 121 QMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSG 180

Query: 200 DLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLIS 259
            +D A  +F  M  +D+ SWT M+G         +A  +F +M +   + +    L++++
Sbjct: 181 SIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILN 240

Query: 260 VNAI--LGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSL 317
            +AI   G L+  K++H      G  S+LR+ N++I MY+KCG +D +R VF+ + ++ +
Sbjct: 241 ASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDV 300

Query: 318 VSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHG 377
           +SW A+I G  QNGC  EA   F+KM+QE     DS T +S+L       A E   ++H 
Sbjct: 301 ISWNAMIGGLAQNGCGHEAFTIFLKMQQEGF-VPDSTTYLSLLNTHVSTGAWEWVKEVHK 359

Query: 378 IAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGE 437
            A E G      V +  +  Y +CG++D A ++F+++  +R+V +WN +I G      G 
Sbjct: 360 HAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLA-VRNVTTWNAMIGGVAQQKCGR 418

Query: 438 TALALYHKMTETGEVPDSSTYLSILNA-CG----------HAGLTNDGLV---------- 476
            AL+L+ +M   G  PD++T+++IL+A  G          H+   + GLV          
Sbjct: 419 EALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAIDAGLVDLRVGNALVH 478

Query: 477 -------------IFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL-EGMG 522
                        +F+ M+E N        +  ++  LA+ GC  +A  L  ++L EG+ 
Sbjct: 479 MYAKCGNTMYAKQVFDDMVERNVTT-----WTVMISGLAQHGCGHEAFSLFLQMLREGIV 533

Query: 523 PN--IWRALLSGC 533
           P+   + ++LS C
Sbjct: 534 PDATTYVSILSAC 546



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 86/404 (21%), Positives = 178/404 (44%), Gaps = 31/404 (7%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           S  +  Y + G I +A+ +FD++  +NV +W+ +I G +      +++  F  M   G  
Sbjct: 374 SAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFF 433

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL---------------------ESDLF 107
           P++ T V +L A  G + LE  + +H   +  GL                        +F
Sbjct: 434 PDATTFVNILSANVGEEALEWVKEVHSYAIDAGLVDLRVGNALVHMYAKCGNTMYAKQVF 493

Query: 108 EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRA 167
           + +    + +   +++G   +    +A  LF      G+VP+A T ++++  C + G+  
Sbjct: 494 DDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALE 553

Query: 168 LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
             + +H   +  GL+ D+ V N+++ MY+    +D A ++F +M  +DV SWT M+G   
Sbjct: 554 WVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDMLERDVYSWTVMIGGLA 613

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG-GLQSEL 286
                 DAL +F +M+      +  + + ++S  +  G +  G++    +    G++  +
Sbjct: 614 QHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVDEGRRQFLSLTQDYGIEPTM 673

Query: 287 RLSNSIIAMYSKCGDLDSSRS-VFNQITEKSLVSWTAIISGYVQNG---CAREALNQFIK 342
                ++ +  + G L+ ++  + N   E     W A++   V  G    A  A  + +K
Sbjct: 674 EHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDAPWGALLGACVTYGNLEMAEFAAKERLK 733

Query: 343 MRQEKTDSVDSITLVSILTASGELAA---LEICLQLHGIAFEAG 383
           ++ +   +   + L +I  A+G       +   +Q  GI  E G
Sbjct: 734 LKPKSASTY--VLLSNIYAATGNWEQKLLVRSMMQRRGIRKEPG 775



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 96/221 (43%), Gaps = 28/221 (12%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D    + L+  Y K G    A+ +FD++ E+NV +W+++I G + +G   ++   F  M
Sbjct: 468 VDLRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQM 527

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------- 106
           +  G++P++ T V +L A A    LE  + +H   V  GL SDL                
Sbjct: 528 LREGIVPDATTYVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSV 587

Query: 107 ------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                 F+ +    + S   ++ G   +     A+ LF   +  G  PN  + + V+  C
Sbjct: 588 DDARRVFDDMLERDVYSWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSAC 647

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDL 201
              G      +  G    L L  D  +  + ++ Y+C++DL
Sbjct: 648 SHAGL-----VDEGRRQFLSLTQDYGIEPT-MEHYTCMVDL 682


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 175/556 (31%), Positives = 301/556 (54%), Gaps = 23/556 (4%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           ID    SKL   Y   G +KEA  +FDE+  +  + W+I+++  + +G    S+  F  M
Sbjct: 127 IDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKM 186

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL-------------------- 102
           M SG+  +S+T   V  + + L+++     +HG ++K G                     
Sbjct: 187 MSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRV 246

Query: 103 --ESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +F+ +    ++S N+I+ G+++N L ++ + +F     SG+  +  T+++V  GC
Sbjct: 247 DSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGC 306

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
                 +L   +H + +K     +    N++LDMYS   DLD+A  +FREM  + V+S+T
Sbjct: 307 ADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYT 366

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+  +     AG+A+K+F EM +  I  D   +  +++  A    L  GK++H  +   
Sbjct: 367 SMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKEN 426

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
            L  ++ +SN+++ MY+KCG +  +  VF+++  K ++SW  II GY +N  A EAL+ F
Sbjct: 427 DLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLF 486

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
             + +EK  S D  T+  +L A   L+A +   ++HG     G+   R V N L+  Y+K
Sbjct: 487 NLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAK 546

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CG + LA+++F+++   +D+VSW  +I GYG++G G+ A+AL+++M + G   D  +++S
Sbjct: 547 CGALLLAHMLFDDIA-SKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVS 605

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           +L AC H+GL ++G   FN M  E K++P+ EHY C+VD+LAR G L  A      +   
Sbjct: 606 LLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIP 665

Query: 521 MGPNIWRALLSGCVLH 536
               IW ALL GC +H
Sbjct: 666 PDATIWGALLCGCRIH 681



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 128/480 (26%), Positives = 233/480 (48%), Gaps = 35/480 (7%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L++ Y K+ ++  A  +FDE+ E++V+SW+ +I+GY  NG  EK +  F  M++SG+  +
Sbjct: 236 LVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEID 295

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVK--FGLESD--------------------LFE 108
             T+V V    A  + + L R++H + VK  F  E                      +F 
Sbjct: 296 LATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFR 355

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            + +  +VS  +++AG+    L  +AV LF      G+ P+  T+  V+  C        
Sbjct: 356 EMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDE 415

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
            + +H    +  L  D+ V+N+++DMY+    +  A  +F EM  KD+ISW  ++G +  
Sbjct: 416 GKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSK 475

Query: 229 FEYAGDALKIFREM-RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
             YA +AL +F  +  + R   D   +  ++   A L    +G+++H  ++  G  S+  
Sbjct: 476 NCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRH 535

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
           ++NS++ MY+KCG L  +  +F+ I  K LVSWT +I+GY  +G  +EA+  F +MRQ  
Sbjct: 536 VANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAG 595

Query: 348 TDSVDSITLVSILTASGELAALE-----ICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
            ++ D I+ VS+L A      ++       +  H    E     Y     C++   ++ G
Sbjct: 596 IEA-DEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHY----ACIVDMLARTG 650

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
           ++  AY   E M    D   W  ++ G  ++   + A  +  K+ E    P+++ Y  ++
Sbjct: 651 DLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELE--PENTGYYVLM 708



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 114/388 (29%), Positives = 197/388 (50%), Gaps = 25/388 (6%)

Query: 141 FRGSGLVPNAVTMLTVIRGCVALGSRALCELIH----GLTIKLGLILD--VSVNNSVLD- 193
           F  SG + NAV +L V  G   +  R LC ++       ++K G  +D  +  N  V+D 
Sbjct: 71  FCESGNLENAVKLLCV-SGKWDIDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDS 129

Query: 194 --------MYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGD---ALKIFREM 242
                   MY+   DL  A ++F E++ +  + W  +M    +   +GD   ++ +F++M
Sbjct: 130 NLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMN---ELAKSGDFSGSIGLFKKM 186

Query: 243 RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDL 302
             S +  D+     +    + L  +  G+QLH  ++  G      + NS++A Y K   +
Sbjct: 187 MSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRV 246

Query: 303 DSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTA 362
           DS+R VF+++TE+ ++SW +II+GYV NG A + L+ F++M     + +D  T+VS+   
Sbjct: 247 DSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIE-IDLATIVSVFAG 305

Query: 363 SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVS 422
             +   + +   +H I  +A F R     N L+  YSKCG++D A  VF EM   R VVS
Sbjct: 306 CADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMS-DRSVVS 364

Query: 423 WNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMI 482
           + ++I GY   G    A+ L+ +M E G  PD  T  ++LN C    L ++G  + ++ I
Sbjct: 365 YTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRV-HEWI 423

Query: 483 EENKVKPSQEHYGCVVDLLARAGCLSDA 510
           +EN +         ++D+ A+ G + +A
Sbjct: 424 KENDLGFDIFVSNALMDMYAKCGSMQEA 451


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  295 bits (756), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 169/550 (30%), Positives = 297/550 (54%), Gaps = 26/550 (4%)

Query: 10  KLLSNYFKSGKIKEAENLFDEIPE-KNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           KL+  Y K G ++ A  +FDE+P+  +V  W+ ++ GY+  G   + +  F  M   G+ 
Sbjct: 134 KLVLMYLKCGDLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVR 193

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------L 106
           P+++T+  VL   AGL ++E    +HGL+ K G  S                       +
Sbjct: 194 PDAYTISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILV 253

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           F+G+ +  ++S N++++G  +N L+ +A+ LF      G   ++ T+L+V+  C  L   
Sbjct: 254 FDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLL 313

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
            L  ++HG ++K G I   S+ N +LDMYS   D  +  +IFR M  K+V+SWT M+  +
Sbjct: 314 FLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSY 373

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
                      +F+EM       D  A+ + +   A    LK GK +H   +  G++  L
Sbjct: 374 TRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNGMEKVL 433

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            ++N+++ MY KCG+++ ++ +F+ +  K ++SW  +I GY +N  A EA + F +M  +
Sbjct: 434 AVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEMLLQ 493

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
                +++T+  IL A+  L++LE   ++H  A   G+     V N LI  Y KCG + L
Sbjct: 494 LRP--NAVTMTCILPAAASLSSLERGREMHAYALRRGYLEDDFVANALIDMYVKCGALLL 551

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           A  +F+ +   ++++SW  ++ GYG++G G  A+AL+ +M  +G  PD++++ +IL AC 
Sbjct: 552 ARRLFDRLSN-KNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGIAPDAASFSAILYACS 610

Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIW 526
           H+GL ++G   F+ M +E+K++P  +HY C+VDLL   G L +A      +      +IW
Sbjct: 611 HSGLRDEGWRFFDAMRKEHKIEPRLKHYTCMVDLLINTGNLKEAYEFIDSMPIEPDSSIW 670

Query: 527 RALLSGCVLH 536
            +LL GC +H
Sbjct: 671 VSLLRGCRIH 680



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 121/480 (25%), Positives = 231/480 (48%), Gaps = 37/480 (7%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L++ Y KS + K+A  +FD +P ++V+SW+ +I G + NG ++K+++ F  M L G   +
Sbjct: 237 LMAFYAKSNRTKDAILVFDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELD 296

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFE 108
           S T++ VL A A L  L L R +HG  VK G  S                       +F 
Sbjct: 297 SATLLSVLPACAELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFR 356

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            +    +VS  A++  +    L+ +   LF      G  P+   + + +           
Sbjct: 357 NMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKH 416

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
            + +HG  I+ G+   ++V N++++MY    +++ A  IF  +  KD+ISW  ++G +  
Sbjct: 417 GKSVHGYAIRNGMEKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSR 476

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
              A +A  +F EM   ++  + V +  ++   A L  L+RG+++HA  +  G   +  +
Sbjct: 477 NNLANEAFSLFTEM-LLQLRPNAVTMTCILPAAASLSSLERGREMHAYALRRGYLEDDFV 535

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
           +N++I MY KCG L  +R +F++++ K+L+SWT +++GY  +G  R+A+  F +MR    
Sbjct: 536 ANALIDMYVKCGALLLARRLFDRLSNKNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGI 595

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ------NCLISSYSKCG 402
            + D+ +  +IL A          L+  G  F     +   ++       C++      G
Sbjct: 596 -APDAASFSAILYACSHSG-----LRDEGWRFFDAMRKEHKIEPRLKHYTCMVDLLINTG 649

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
           N+  AY   + M    D   W +++ G  ++ + + A  +  ++ E    P+++ Y  +L
Sbjct: 650 NLKEAYEFIDSMPIEPDSSIWVSLLRGCRIHRNVKLAEEVAERVFELE--PENTGYYVLL 707



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 143/308 (46%), Gaps = 50/308 (16%)

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVS-WTAIISGYVQNGCAREALNQFIKMRQE 346
           L   ++ MY KCGDL+++R VF+++ + S V  WTA++SGY + G  RE +  F KM   
Sbjct: 131 LGQKLVLMYLKCGDLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCC 190

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
                D+ T+  +L     L ++E    +HG+  + GF    +V N L++ Y+K      
Sbjct: 191 GVRP-DAYTISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKD 249

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           A +VF+ M   RDV+SWN++I G   NG  + A+ L+ +M   GE  DS+T LS+L AC 
Sbjct: 250 AILVFDGMPH-RDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACA 308

Query: 467 -----------HAGLTNDGLV------------------------IFNQMIEENKVKPSQ 491
                      H      G +                        IF  M+++N V    
Sbjct: 309 ELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVS--- 365

Query: 492 EHYGCVVDLLARAGCLSDASGLAGKL-LEGMGPNIW------RALLSGCVLHVGRFQDAE 544
             +  ++    RAG     +GL  ++ LEG  P+I+       A     +L  G+     
Sbjct: 366 --WTAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGY 423

Query: 545 ALRSGSQK 552
           A+R+G +K
Sbjct: 424 AIRNGMEK 431


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  295 bits (755), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 176/572 (30%), Positives = 298/572 (52%), Gaps = 29/572 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L++ + K G + +A  +F+ +P +++++W+ +I G + +   +++   F  M 
Sbjct: 239 DLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVME 298

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG-------------- 109
             G+ P+    V +L A    + LE  + +H  M + GL+++++ G              
Sbjct: 299 EEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSME 358

Query: 110 --------LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                   +K   +VS  A++AGF  +   ++A L FN    SG+ PN VT ++++  C 
Sbjct: 359 DALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACS 418

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
              +      IH   IK G I D  V  ++L MY+    L  A  +F  +  ++V++W  
Sbjct: 419 RPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNA 478

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+  +V  E   +A+  F+ + K  I  D+    ++++V      L+ GK + + ++  G
Sbjct: 479 MITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAG 538

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
            +S+L + N++++M+  CGDL S+ ++FN + E+ LVSW  II+G+VQ+G  + A + F 
Sbjct: 539 FESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYF- 597

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           KM QE     D IT   +L A     AL    +LH +  EA       V   LIS Y+KC
Sbjct: 598 KMMQESGVKPDQITFTGLLNACASPEALTEGRRLHALITEAALDCDVVVGTGLISMYTKC 657

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G++D A++VF  +   ++V SW ++I GY  +G G+ AL L+ +M + G  PD  T++  
Sbjct: 658 GSIDDAHLVFHNLP-KKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGA 716

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L+AC HAGL  +GL  F  M + N ++P  EHYGC+VDL  RAG L +A     K+    
Sbjct: 717 LSACAHAGLIKEGLHHFESMKDFN-IEPRMEHYGCMVDLFGRAGLLHEAVEFINKMQVKP 775

Query: 522 GPNIWRALLSGCVLHVGRFQDAEALRSGSQKK 553
              +W ALL  C +H+    D E     +QKK
Sbjct: 776 DSRLWGALLGACQVHL----DVELAEKVAQKK 803



 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 156/587 (26%), Positives = 301/587 (51%), Gaps = 28/587 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L+S Y K G    A+ +FDE+P+K+V SW++++ GY  +  +E++ +    M+
Sbjct: 138 DIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMV 197

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG-------------- 109
             G+ P+ +T V +L A A  +N++    +  L++  G ++DLF G              
Sbjct: 198 QDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVD 257

Query: 110 --------LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                   L    L++  +++ G   ++ F+QA  LF      G+ P+ V  +++++ C 
Sbjct: 258 DALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACN 317

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
              +    + +H    ++GL  ++ V  ++L MY+    ++ A+++F  ++ ++V+SWT 
Sbjct: 318 HPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTA 377

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+  F       +A   F +M +S I  + V  ++++   +    LK+G+Q+H +++  G
Sbjct: 378 MIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAG 437

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
             ++ R+  ++++MY+KCG L  +R+VF +I+++++V+W A+I+ YVQ+     A+  F 
Sbjct: 438 YITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQ 497

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
            + +E     DS T  SIL       ALE+   +  +   AGF     ++N L+S +  C
Sbjct: 498 ALLKEGIKP-DSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNC 556

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G++  A  +F +M   RD+VSWNTII G+  +G  + A   +  M E+G  PD  T+  +
Sbjct: 557 GDLMSAMNLFNDMP-ERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGL 615

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           LNAC       +G  + + +I E  +         ++ +  + G + DA  L    L   
Sbjct: 616 LNACASPEALTEGRRL-HALITEAALDCDVVVGTGLISMYTKCGSIDDAH-LVFHNLPKK 673

Query: 522 GPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFLNSTS 568
               W ++++G   H GR ++A  L    Q++G +K   I+F+ + S
Sbjct: 674 NVYSWTSMITGYAQH-GRGKEALELFCQMQQEG-VKPDWITFVGALS 718



 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 133/512 (25%), Positives = 246/512 (48%), Gaps = 31/512 (6%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y  + LLS Y K G +++A  +F+ +  +NVVSW+ +I G++ +G  E++   F+ M+ S
Sbjct: 342 YVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIES 401

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-------------------- 105
           G+ PN  T + +L A +    L+  R IH  ++K G  +D                    
Sbjct: 402 GIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDA 461

Query: 106 --LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
             +FE +    +V+ NA++  ++ ++ +  AV  F      G+ P++ T  +++  C + 
Sbjct: 462 RNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSP 521

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
            +  L + +  L I+ G   D+ + N+++ M+    DL +A+ +F +M  +D++SW  ++
Sbjct: 522 DALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTII 581

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
             FV       A   F+ M++S +  D +    L++  A    L  G++LHA +    L 
Sbjct: 582 AGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRRLHALITEAALD 641

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
            ++ +   +I+MY+KCG +D +  VF+ + +K++ SWT++I+GY Q+G  +EAL  F +M
Sbjct: 642 CDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYAQHGRGKEALELFCQM 701

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGF---PRYRSVQNCLISSYSK 400
           +QE     D IT V  L+A      ++    LH       F   PR      C++  + +
Sbjct: 702 QQEGVKP-DWITFVGALSACAHAGLIK--EGLHHFESMKDFNIEPRMEHY-GCMVDLFGR 757

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
            G +  A     +M    D   W  ++    V+   E A  +  K  E  +  D   Y+ 
Sbjct: 758 AGLLHEAVEFINKMQVKPDSRLWGALLGACQVHLDVELAEKVAQKKLEL-DPNDDGVYVI 816

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKV-KPSQ 491
           + N    AG+  +   +   M++   V KP Q
Sbjct: 817 LSNIYAAAGMWKEVTKMRKVMLDRGVVKKPGQ 848



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 147/293 (50%), Gaps = 12/293 (4%)

Query: 253 ALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQI 312
           +LL L   +  LGD   G+++H  +    +Q ++ + N +I+MY+KCG+ +S++ +F+++
Sbjct: 109 SLLQLCIKHKNLGD---GERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEM 165

Query: 313 TEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEIC 372
            +K + SW  ++ GYVQ+    EA     +M Q+     D  T V +L A  +   ++  
Sbjct: 166 PDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKP-DKYTFVYMLNACADAKNVDKG 224

Query: 373 LQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGV 432
            +L  +   AG+     V   LI+ + KCG VD A  VF  +   RD+++W ++I G   
Sbjct: 225 GELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLP-RRDLITWTSMITGLAR 283

Query: 433 NGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQE 492
           +   + A  L+  M E G  PD   ++S+L AC H      G  +  +M E   V    E
Sbjct: 284 HRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKE---VGLDTE 340

Query: 493 HY--GCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDA 543
            Y    ++ +  + G + DA  +   L++G     W A+++G   H GR ++A
Sbjct: 341 IYVGTALLSMYTKCGSMEDALEVFN-LVKGRNVVSWTAMIAGFAQH-GRMEEA 391


>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
          Length = 1151

 Score =  295 bits (755), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 177/565 (31%), Positives = 293/565 (51%), Gaps = 28/565 (4%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C + +  + +++ Y + G  + AE +F ++P ++ V+++ +I G++  G  E +++ F  
Sbjct: 175 CSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEE 234

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-LFEGLKNPYLVSCNA 120
           M  SGL P+  T+  +L A A L +L+    +H  + K G+ SD + EG      V C  
Sbjct: 235 MQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGD 294

Query: 121 I-VAGFINNKLFQQAVLLFNFF--------------------RGSGLVPNAVTMLTVIRG 159
           +  A  I N   +  V+L+N                      + +G+ PN  T   ++R 
Sbjct: 295 VETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRT 354

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C       L E IH L++K G   D+ V+  ++DMYS    L+ A ++   ++ KDV+SW
Sbjct: 355 CTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSW 414

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           T M+  +V  E   DAL  F+EM+K  I  D + L + IS  A +  +++G Q+HA++ +
Sbjct: 415 TSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYV 474

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G   ++ + N+++ +Y++CG +  + S F ++  K  ++   ++SG+ Q+G   EAL  
Sbjct: 475 SGYSGDVSIWNALVNLYARCGRIREAFSSFEEMELKDGITGNGLVSGFAQSGLHEEALKV 534

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           F++M Q      +  T VS L+AS  LA ++   Q+H    + G      V N LIS Y 
Sbjct: 535 FMRMDQSGVKH-NVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYG 593

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           KCG+ + A + F EM   R+ VSWNTII     +G G  AL L+ +M + G  P+  T++
Sbjct: 594 KCGSFEDAKMEFSEMS-ERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFI 652

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519
            +L AC H GL  +GL  F  M +E  ++P  +HY CV+D+  RAG L  A     ++  
Sbjct: 653 GVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPI 712

Query: 520 GMGPNIWRALLSGCVLH----VGRF 540
                +WR LLS C +H    VG F
Sbjct: 713 AADAMVWRTLLSACKVHKNIEVGEF 737



 Score =  209 bits (531), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 149/576 (25%), Positives = 283/576 (49%), Gaps = 28/576 (4%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+  Y K+G +  A  +F+E+  ++ VSW  ++ GY+ NG  E+++  +  M  +G++P 
Sbjct: 83  LIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPT 142

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--------------------- 109
            + +  VL +    +     R IH    K G  S++F G                     
Sbjct: 143 PYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFC 202

Query: 110 -LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            + +   V+ N +++G       + A+ +F   + SGL P+ VT+ +++  C +LG    
Sbjct: 203 DMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQK 262

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
              +H    K G+  D  +  S+LD+Y    D++ A+ IF   +  +V+ W  M+  F  
Sbjct: 263 GTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQ 322

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
                 + ++F +M+ + I  +      ++       ++  G+Q+H+  V  G +S++ +
Sbjct: 323 INDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYV 382

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
           S  +I MYSK G L+ +R V   + EK +VSWT++I+GYVQ+ C ++AL  F +M Q+  
Sbjct: 383 SGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEM-QKCG 441

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
              D+I L S ++    + A+   LQ+H   + +G+    S+ N L++ Y++CG +  A+
Sbjct: 442 IWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAF 501

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
             FEEM  L+D ++ N ++ G+  +G  E AL ++ +M ++G   +  T++S L+A  + 
Sbjct: 502 SSFEEME-LKDGITGNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANL 560

Query: 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRA 528
                G  I  ++I+      + E    ++ L  + G   DA     ++ E      W  
Sbjct: 561 AEIKQGKQIHARVIKTGHSFET-EVGNALISLYGKCGSFEDAKMEFSEMSE-RNEVSWNT 618

Query: 529 LLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFL 564
           +++ C  H GR  +A  L    +K+G IK   ++F+
Sbjct: 619 IITSCSQH-GRGLEALDLFDQMKKEG-IKPNDVTFI 652



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 129/477 (27%), Positives = 232/477 (48%), Gaps = 25/477 (5%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           LL  Y K G ++ A  +F+     NVV W++++  +       KS + F  M  +G+ PN
Sbjct: 285 LLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPN 344

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF----------------------E 108
            FT   +L      + ++L   IH L VK G ESD++                      E
Sbjct: 345 QFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLE 404

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            LK   +VS  +++AG++ ++  + A+  F   +  G+ P+ + + + I GC  + +   
Sbjct: 405 MLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQ 464

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
              IH      G   DVS+ N+++++Y+    +  A   F EME KD I+   ++  F  
Sbjct: 465 GLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEMELKDGITGNGLVSGFAQ 524

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
                +ALK+F  M +S +  +    ++ +S +A L ++K+GKQ+HA+V+  G   E  +
Sbjct: 525 SGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEV 584

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
            N++I++Y KCG  + ++  F++++E++ VSW  II+   Q+G   EAL+ F +M++E  
Sbjct: 585 GNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGI 644

Query: 349 DSVDSITLVSILTASGELAALEICLQ-LHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
              D +T + +L A   +  +E  L     ++ E G         C+I  + + G +D A
Sbjct: 645 KPND-VTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRA 703

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
               EEM    D + W T++    V+ + E        + E  E  DS++Y+ + NA
Sbjct: 704 KKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLEL-EPHDSASYVLLSNA 759



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 82/267 (30%), Positives = 132/267 (49%), Gaps = 7/267 (2%)

Query: 211 MECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG 270
           M  +   S  R +  F+  E     L +F +  K+R       L    ++ A  G+ +R 
Sbjct: 1   MTRRGAASLGRTLAGFLAHEDPAKVLSLFAD--KARQHGGLGPLDFACALRACRGNGRRW 58

Query: 271 K---QLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGY 327
           +   ++HA+ V  GL     + N +I +YSK G +  +R VF +++ +  VSW A++SGY
Sbjct: 59  QVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGY 118

Query: 328 VQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRY 387
            QNG   EAL  + +M +        + L S+L++  +         +H   ++ GF   
Sbjct: 119 AQNGLGEEALGLYRQMHRAGVVPTPYV-LSSVLSSCTKAELFAQGRLIHAQGYKHGFCSE 177

Query: 388 RSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMT 447
             V N +I+ Y +CG+  LA  VF +M   RD V++NT+I G+   GHGE AL ++ +M 
Sbjct: 178 IFVGNAVITLYLRCGSFRLAERVFCDMPH-RDTVTFNTLISGHAQCGHGEHALEIFEEMQ 236

Query: 448 ETGEVPDSSTYLSILNACGHAGLTNDG 474
            +G  PD  T  S+L AC   G    G
Sbjct: 237 FSGLSPDCVTISSLLAACASLGDLQKG 263



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 46/111 (41%), Positives = 59/111 (53%), Gaps = 1/111 (0%)

Query: 370 EICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYG 429
           ++  ++H  A   G  +YR V N LI  YSK G V  A  VFEE+   RD VSW  ++ G
Sbjct: 59  QVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELS-ARDNVSWVAMLSG 117

Query: 430 YGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQ 480
           Y  NG GE AL LY +M   G VP      S+L++C  A L   G +I  Q
Sbjct: 118 YAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQ 168


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  295 bits (754), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 174/564 (30%), Positives = 296/564 (52%), Gaps = 32/564 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L++ Y + G    A  LFDE+P++N V+W+ +I GY+ NG  E +      M+
Sbjct: 34  DLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMPEDACGVLKEMI 93

Query: 64  LSGLLPNSFTMVGVLVAAA-GLQNLELARSIHGLMVKFGLESD---LFEGLKNPYL---- 115
             G LPN F     + A    +      R +HG  ++ GL      +  GL N Y     
Sbjct: 94  FEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVGNGLINMYAKCGD 153

Query: 116 ----------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                           VS N+++ G   NK F+ AV  +N  R +GL+P+   +++ +  
Sbjct: 154 IDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFALISALSS 213

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C +LG   L +  HG  IKLGL +DVSV+N++L +Y+    L    ++F  M  +D +SW
Sbjct: 214 CASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKVFSWMLERDQVSW 273

Query: 220 TRMMGLFVDF-EYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
             ++G   D      +A+++F EM ++    + V  +NL++  + L   K   Q+HA ++
Sbjct: 274 NTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLSHQIHALIL 333

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK-SLVSWTAIISGYVQNGCAREAL 337
              ++ +  + N+++A Y K G++++   +F++++E+   VSW ++ISGY+ N    +A+
Sbjct: 334 KYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISGYIHNELLCKAM 393

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
           +  + +  ++   +D  T  ++L+A   +A LE  +++H  A  A       + + L+  
Sbjct: 394 D-LVWLMMQRGQRLDCFTFATVLSACATVATLECGMEVHACAIRACLESDVVIGSALVDM 452

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           YSKCG +D A   F  M  +R++ SWN++I GY  +GHG+ AL L+ +M  +G++PD  T
Sbjct: 453 YSKCGRIDYASRFFNLMP-VRNLYSWNSMISGYARHGHGDNALRLFTRMKLSGQLPDHIT 511

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL 517
           ++ +L+AC H GL ++G   F  M E   + P  EHY C+VDLL RAG L        K+
Sbjct: 512 FVGVLSACSHIGLVDEGFEYFKSMTEVYGLVPRVEHYSCMVDLLGRAGELDKIENFINKM 571

Query: 518 LEGMGPN--IWRALLSGCVLHVGR 539
              + PN  IWR +L  C    GR
Sbjct: 572 --PIKPNILIWRTVLGACCRGNGR 593



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 178/366 (48%), Gaps = 8/366 (2%)

Query: 171 LIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFE 230
           L H   +K G   D+ + N+++++Y  + D  +A ++F EM  ++ ++W  ++  +    
Sbjct: 21  LFHLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNG 80

Query: 231 YAGDALKIFREMRKSRIICDTVALLNLI-SVNAILGDLKRGKQLHAQVVLGGL-QSELRL 288
              DA  + +EM     + +  A  + I +    +   ++G+Q+H   +  GL  +++ +
Sbjct: 81  MPEDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAV 140

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
            N +I MY+KCGD+D +RSVF  + +K  VSW ++I+G  QN C  +A+  +  MR  KT
Sbjct: 141 GNGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMR--KT 198

Query: 349 DSVDS-ITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
             + S   L+S L++   L  + +  Q HG   + G     SV N L++ Y++   +   
Sbjct: 199 GLMPSNFALISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAEC 258

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHG-ETALALYHKMTETGEVPDSSTYLSILNACG 466
             VF  M   RD VSWNT+I     +G     A+ ++ +M   G  P+  T++++L    
Sbjct: 259 QKVFSWM-LERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVS 317

Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIW 526
               +     I   +++ N VK        ++    ++G + +   +  ++ E      W
Sbjct: 318 SLSTSKLSHQIHALILKYN-VKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSW 376

Query: 527 RALLSG 532
            +++SG
Sbjct: 377 NSMISG 382


>gi|225457044|ref|XP_002279639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300
           [Vitis vinifera]
          Length = 807

 Score =  294 bits (753), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 174/554 (31%), Positives = 298/554 (53%), Gaps = 30/554 (5%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS-GLLP 69
           LL+ Y+K G +++A  +F+++PE ++VSW+ +I G+  +  + +S+  F  M+   G+ P
Sbjct: 150 LLTMYWKCGVVEDAVQMFEKMPEVDLVSWNTMISGFQKSMDYTRSLMFFRSMVWEFGIYP 209

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF------------------EGLK 111
           N    V  +++ + LQ+L   R IHG++VK GL+ + +                  E + 
Sbjct: 210 NRVACVSSILSCSSLQSLTHGREIHGVVVKSGLDVEEYLVSSLIEMYMKCGSIKNAENIF 269

Query: 112 NPYL---------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA 162
           N  L         V  N +++G+++N  F QA+LLF      G+ P+  TM+++   C  
Sbjct: 270 NSILDKDSVRRNAVIWNVMISGYVSNGCFSQALLLFIKMMVWGIKPDYSTMVSLFSLCSE 329

Query: 163 LGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
               A  + IHGL  K GL  ++ V  ++LDMY    D+   ++IFR  +  ++I W+ +
Sbjct: 330 SLDIAFGKQIHGLIFKFGLKNNIRVETALLDMYLKCGDMGTGLKIFRRSQNHNLIMWSAV 389

Query: 223 MGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL 282
           +           AL++F E +    + D+  L+ ++   + L     G Q+H      G 
Sbjct: 390 ISNCAQSGCPTKALELFYEFKMEDGLADSGILVAVLRACSSLTLKPEGMQIHGLATKMGF 449

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
            S++ + ++++ +Y+KC D+  S+ VF ++++K LVSW A+ISGY Q+ CA EAL  F  
Sbjct: 450 VSDVFVGSALVDLYAKCRDMGYSKKVFLRLSQKDLVSWNALISGYAQDECADEALKAFRD 509

Query: 343 MRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
           M+ E+    +++T+  IL+    L+ + +C ++HG     G      V N LI++Y+KCG
Sbjct: 510 MQLEEIRP-NTVTIACILSVCAHLSVMTLCKEVHGYLIRQGLGSTVLVSNSLIATYAKCG 568

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
           +++ +   FE+M   R+ VSWN+II G G++   +  + L+ KM  +G  PD  T+ +IL
Sbjct: 569 DINSSLYTFEKMP-ERNDVSWNSIILGMGMHSRTDEMIVLFDKMVASGIKPDHVTFTAIL 627

Query: 463 NACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMG 522
           +AC HAG  ++G   F  M+E+  +KP  E Y C+VDLL RAG L+ A  L   +     
Sbjct: 628 SACSHAGRVDEGCKYFKSMVEDFNLKPQLEQYTCMVDLLGRAGHLNQAYDLIMAMPCTPD 687

Query: 523 PNIWRALLSGCVLH 536
             IW +LL  C  H
Sbjct: 688 DRIWGSLLGSCKNH 701



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 132/467 (28%), Positives = 233/467 (49%), Gaps = 31/467 (6%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEK-----NVVSWSIVIHGYSINGFHEKSMK 57
           ++ Y  S L+  Y K G IK AEN+F+ I +K     N V W+++I GY  NG   +++ 
Sbjct: 244 VEEYLVSSLIEMYMKCGSIKNAENIFNSILDKDSVRRNAVIWNVMISGYVSNGCFSQALL 303

Query: 58  AFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES------------- 104
            F  MM+ G+ P+  TMV +    +   ++   + IHGL+ KFGL++             
Sbjct: 304 LFIKMMVWGIKPDYSTMVSLFSLCSESLDIAFGKQIHGLIFKFGLKNNIRVETALLDMYL 363

Query: 105 ---DLFEGLK------NPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLT 155
              D+  GLK      N  L+  +A+++    +    +A+ LF  F+    + ++  ++ 
Sbjct: 364 KCGDMGTGLKIFRRSQNHNLIMWSAVISNCAQSGCPTKALELFYEFKMEDGLADSGILVA 423

Query: 156 VIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKD 215
           V+R C +L  +     IHGL  K+G + DV V ++++D+Y+   D+  + ++F  +  KD
Sbjct: 424 VLRACSSLTLKPEGMQIHGLATKMGFVSDVFVGSALVDLYAKCRDMGYSKKVFLRLSQKD 483

Query: 216 VISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
           ++SW  ++  +   E A +ALK FR+M+   I  +TV +  ++SV A L  +   K++H 
Sbjct: 484 LVSWNALISGYAQDECADEALKAFRDMQLEEIRPNTVTIACILSVCAHLSVMTLCKEVHG 543

Query: 276 QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
            ++  GL S + +SNS+IA Y+KCGD++SS   F ++ E++ VSW +II G   +    E
Sbjct: 544 YLIRQGLGSTVLVSNSLIATYAKCGDINSSLYTFEKMPERNDVSWNSIILGMGMHSRTDE 603

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAAL-EICLQLHGIAFEAGFPRYRSVQNCL 394
            +  F KM        D +T  +IL+A      + E C     +  +           C+
Sbjct: 604 MIVLFDKMVASGIKP-DHVTFTAILSACSHAGRVDEGCKYFKSMVEDFNLKPQLEQYTCM 662

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALA 441
           +    + G+++ AY +   M    D   W +++       HG+  LA
Sbjct: 663 VDLLGRAGHLNQAYDLIMAMPCTPDDRIWGSLL--GSCKNHGDEILA 707



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 127/458 (27%), Positives = 221/458 (48%), Gaps = 37/458 (8%)

Query: 42  VIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAA-AGLQNLELARSIHGLMVKF 100
           VI  Y+ +GF + ++  +  M+  G+    F     L+ A  GL ++   R IHG ++K 
Sbjct: 79  VIREYTEDGFFDDAIGVYLKMLDDGVKVEEFRYFPCLIKAFGGLCDVYKGRQIHGHVLKL 138

Query: 101 GLESD----------------------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLF 138
           G+  D                      +FE +    LVS N +++GF  +  + ++++  
Sbjct: 139 GVLDDVSVVNSLLTMYWKCGVVEDAVQMFEKMPEVDLVSWNTMISGFQKSMDYTRSLM-- 196

Query: 139 NFFRGS----GLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDM 194
            FFR      G+ PN V  ++ I  C +L S      IHG+ +K GL ++  + +S+++M
Sbjct: 197 -FFRSMVWEFGIYPNRVACVSSILSCSSLQSLTHGREIHGVVVKSGLDVEEYLVSSLIEM 255

Query: 195 YSCLMDLDAAIQIFREMECKDVIS-----WTRMMGLFVDFEYAGDALKIFREMRKSRIIC 249
           Y     +  A  IF  +  KD +      W  M+  +V       AL +F +M    I  
Sbjct: 256 YMKCGSIKNAENIFNSILDKDSVRRNAVIWNVMISGYVSNGCFSQALLLFIKMMVWGIKP 315

Query: 250 DTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVF 309
           D   +++L S+ +   D+  GKQ+H  +   GL++ +R+  +++ MY KCGD+ +   +F
Sbjct: 316 DYSTMVSLFSLCSESLDIAFGKQIHGLIFKFGLKNNIRVETALLDMYLKCGDMGTGLKIF 375

Query: 310 NQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAAL 369
            +    +L+ W+A+IS   Q+GC  +AL  F + + E     DS  LV++L A   L   
Sbjct: 376 RRSQNHNLIMWSAVISNCAQSGCPTKALELFYEFKMED-GLADSGILVAVLRACSSLTLK 434

Query: 370 EICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYG 429
              +Q+HG+A + GF     V + L+  Y+KC ++  +  VF  +   +D+VSWN +I G
Sbjct: 435 PEGMQIHGLATKMGFVSDVFVGSALVDLYAKCRDMGYSKKVFLRLS-QKDLVSWNALISG 493

Query: 430 YGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
           Y  +   + AL  +  M      P++ T   IL+ C H
Sbjct: 494 YAQDECADEALKAFRDMQLEEIRPNTVTIACILSVCAH 531



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 103/329 (31%), Positives = 164/329 (49%), Gaps = 13/329 (3%)

Query: 160 CVALGSRALCEL-----IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
           C+      LC++     IHG  +KLG++ DVSV NS+L MY     ++ A+Q+F +M   
Sbjct: 114 CLIKAFGGLCDVYKGRQIHGHVLKLGVLDDVSVVNSLLTMYWKCGVVEDAVQMFEKMPEV 173

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREM-RKSRIICDTVALLNLISVNAILGDLKRGKQL 273
           D++SW  M+  F        +L  FR M  +  I  + VA ++ I   + L  L  G+++
Sbjct: 174 DLVSWNTMISGFQKSMDYTRSLMFFRSMVWEFGIYPNRVACVSSILSCSSLQSLTHGREI 233

Query: 274 HAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVS-----WTAIISGYV 328
           H  VV  GL  E  L +S+I MY KCG + ++ ++FN I +K  V      W  +ISGYV
Sbjct: 234 HGVVVKSGLDVEEYLVSSLIEMYMKCGSIKNAENIFNSILDKDSVRRNAVIWNVMISGYV 293

Query: 329 QNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYR 388
            NGC  +AL  FIKM        D  T+VS+ +   E   +    Q+HG+ F+ G     
Sbjct: 294 SNGCFSQALLLFIKMMVWGIKP-DYSTMVSLFSLCSESLDIAFGKQIHGLIFKFGLKNNI 352

Query: 389 SVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTE 448
            V+  L+  Y KCG++     +F       +++ W+ +I     +G    AL L+++   
Sbjct: 353 RVETALLDMYLKCGDMGTGLKIFRRSQN-HNLIMWSAVISNCAQSGCPTKALELFYEFKM 411

Query: 449 TGEVPDSSTYLSILNACGHAGLTNDGLVI 477
              + DS   +++L AC    L  +G+ I
Sbjct: 412 EDGLADSGILVAVLRACSSLTLKPEGMQI 440



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 98/217 (45%), Gaps = 7/217 (3%)

Query: 323 IISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEA 382
           +I  Y ++G   +A+  ++KM  +     +      ++ A G L  +    Q+HG   + 
Sbjct: 79  VIREYTEDGFFDDAIGVYLKMLDDGVKVEEFRYFPCLIKAFGGLCDVYKGRQIHGHVLKL 138

Query: 383 GFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALAL 442
           G     SV N L++ Y KCG V+ A  +FE+M  + D+VSWNT+I G+  +     +L  
Sbjct: 139 GVLDDVSVVNSLLTMYWKCGVVEDAVQMFEKMPEV-DLVSWNTMISGFQKSMDYTRSLMF 197

Query: 443 YHKMT-ETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLL 501
           +  M  E G  P+    +S + +C        G  I   +++   +   +     ++++ 
Sbjct: 198 FRSMVWEFGIYPNRVACVSSILSCSSLQSLTHGREIHGVVVKSG-LDVEEYLVSSLIEMY 256

Query: 502 ARAGCLSDASGLAGKLLEG----MGPNIWRALLSGCV 534
            + G + +A  +   +L+         IW  ++SG V
Sbjct: 257 MKCGSIKNAENIFNSILDKDSVRRNAVIWNVMISGYV 293


>gi|449439011|ref|XP_004137281.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Cucumis sativus]
          Length = 787

 Score =  294 bits (753), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 181/552 (32%), Positives = 293/552 (53%), Gaps = 25/552 (4%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSG-L 67
           S L  +Y   G +  A  LFD++ + ++  W+ +I  Y   GFH  +++ F  M+ SG  
Sbjct: 121 SHLAVSYAFCGCVPLARKLFDDLSDPSLFLWNAIIKMYVDKGFHFDALRVFDSMICSGKC 180

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMV----------------------KFGLESD 105
            P+ +T   V+ A + +  L +   IHG  +                      K GL   
Sbjct: 181 WPDKYTFPLVIKACSVMSMLNVGVLIHGRALVSGFSSNMFVQNSLLAMYMNCGKVGLARQ 240

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F  +    +VS N +++G+  N   ++A+ +FN    + + P++ T+++ +  C  L  
Sbjct: 241 VFNVMLKRSVVSWNTMISGWFQNGRPEEALAVFNSMMDARVEPDSATIVSALPSCGHLKE 300

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
             L   +H L  K  L   + V N+++DMYS    +D A  +F E + KDVI+WT M+  
Sbjct: 301 LELGIKVHKLVQKNHLQEKIEVRNALVDMYSRCGGMDEASLVFAETKEKDVITWTSMING 360

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           ++    A  AL +   M+   ++ + V L +L+S  A L  LK+GK LHA V+   L S+
Sbjct: 361 YIMNGNAKSALALCPAMQLDGVVPNAVTLASLLSACASLCCLKQGKSLHAWVMRKKLDSD 420

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           + +  ++I MY+KC  +  S  VF + + K  V W A++SG + N  AREA+  F  M  
Sbjct: 421 VLVVTALIDMYAKCNAVSYSFQVFAKTSMKRTVPWNALLSGLIHNELAREAVGLFKSMLI 480

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
           E+ ++ +  T  S++ A   LA L+  + LH     +GF    +V   LI  YSKCG++D
Sbjct: 481 EEVEA-NHATFNSVIPAYAILADLKQVMNLHSYLVRSGFISKIAVITGLIDMYSKCGSLD 539

Query: 406 LAYIVFEEM-GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
            A+ +F+E+    +D++ W+ +I GYG++GHGETA+ L+++M  +G  P+  T+ S+L+A
Sbjct: 540 YAHKIFDEIPNKEKDIIVWSVLIAGYGMHGHGETAVLLFNQMVHSGMQPNEITFTSVLHA 599

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C H GL +DGL +F  MIE     P   HY CVVDLL RAG L +A  L   +      +
Sbjct: 600 CSHRGLVDDGLTLFKYMIENYPSSPLPNHYTCVVDLLGRAGRLDEAYDLIKSMPFQQNHS 659

Query: 525 IWRALLSGCVLH 536
           IW ALL  C++H
Sbjct: 660 IWGALLGACLIH 671



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 90/293 (30%), Positives = 150/293 (51%), Gaps = 7/293 (2%)

Query: 267 LKRGKQLHAQVVLGGLQSE---LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAI 323
           L + K LH   +  GL      + L + +   Y+ CG +  +R +F+ +++ SL  W AI
Sbjct: 95  LNKTKILHGHTITSGLLHSPNFIHLPSHLAVSYAFCGCVPLARKLFDDLSDPSLFLWNAI 154

Query: 324 ISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG 383
           I  YV  G   +AL  F  M        D  T   ++ A   ++ L + + +HG A  +G
Sbjct: 155 IKMYVDKGFHFDALRVFDSMICSGKCWPDKYTFPLVIKACSVMSMLNVGVLIHGRALVSG 214

Query: 384 FPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALY 443
           F     VQN L++ Y  CG V LA  VF  M   R VVSWNT+I G+  NG  E ALA++
Sbjct: 215 FSSNMFVQNSLLAMYMNCGKVGLARQVFNVM-LKRSVVSWNTMISGWFQNGRPEEALAVF 273

Query: 444 HKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLAR 503
           + M +    PDS+T +S L +CGH      G+ + ++++++N ++   E    +VD+ +R
Sbjct: 274 NSMMDARVEPDSATIVSALPSCGHLKELELGIKV-HKLVQKNHLQEKIEVRNALVDMYSR 332

Query: 504 AGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGII 556
            G + +AS +  +  E      W ++++G +++ G  + A AL    Q  G++
Sbjct: 333 CGGMDEASLVFAETKEK-DVITWTSMINGYIMN-GNAKSALALCPAMQLDGVV 383


>gi|356503704|ref|XP_003520645.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Glycine max]
          Length = 855

 Score =  294 bits (752), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 190/615 (30%), Positives = 307/615 (49%), Gaps = 63/615 (10%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + +L+ Y K G +K+A   FD +  +NVVSW+I+I GYS NG    ++  +  M+ SG  
Sbjct: 196 NHILNMYGKCGSLKDARKAFDTMQLRNVVSWTIMISGYSQNGQENDAIIMYIQMLQSGYF 255

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE----------------------SDL 106
           P+  T   ++ A     +++L R +HG ++K G +                      SD+
Sbjct: 256 PDPLTFGSIIKACCIAGDIDLGRQLHGHVIKSGYDHHLIAQNALISMYTRFGQIVHASDV 315

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLF-NFFRGSGLVPNAVTMLTVIRGCVALGS 165
           F  +    L+S  +++ GF       +A+ LF + FR     PN     +V   C +L  
Sbjct: 316 FTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFRQGFYQPNEFIFGSVFSACRSLLE 375

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
                 IHG+  K GL  +V    S+ DMY+    L +AI+ F ++E  D++SW  ++  
Sbjct: 376 PEFGRQIHGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAIRAFYQIESPDLVSWNAIIAA 435

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           F D     +A+  F +M  + ++ D +  L+L+        + +G Q+H+ ++  GL  E
Sbjct: 436 FSDSGDVNEAIYFFCQMMHTGLMPDGITFLSLLCACGSPVTINQGTQIHSYIIKIGLDKE 495

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKS-LVSWTAIISGYVQNGCAREALNQFIKMR 344
             + NS++ MY+KC +L  + +VF  ++E + LVSW AI+S  +Q+  A E    F K+ 
Sbjct: 496 AAVCNSLLTMYTKCSNLHDAFNVFKDVSENANLVSWNAILSACLQHKQAGEVFRLF-KLM 554

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
               +  D+IT+ +IL    ELA+LE+  Q+H  + ++G     SV N LI  Y+KCG++
Sbjct: 555 LFSENKPDNITITTILGTCAELASLEVGNQVHCFSVKSGLVVDVSVSNRLIDMYAKCGSL 614

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
             A  VF       D+VSW+++I GY   G G  AL L+  M   G  P+  TYL +L+A
Sbjct: 615 KHARDVFGSTQN-PDIVSWSSLIVGYAQFGLGHEALNLFRMMKNLGVQPNEVTYLGVLSA 673

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C H GL  +G   +N M  E  + P++EH  C+VDLLARAGCL +A     K+  G  P+
Sbjct: 674 CSHIGLVEEGWHFYNTMEIELGIPPTREHVSCMVDLLARAGCLYEAENFIKKM--GFNPD 731

Query: 525 I--WRALLSGCVLH---------------------------------VGRFQDAEALRSG 549
           I  W+ LL+ C  H                                 VG +++   LR+ 
Sbjct: 732 ITMWKTLLASCKTHGNVDIAERAAENILKLDPSNSAALVLLSNIHASVGNWKEVARLRNL 791

Query: 550 SQKKGIIKIPGISFL 564
            ++ G+ K+PG S++
Sbjct: 792 MKQMGVQKVPGQSWI 806



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 118/424 (27%), Positives = 202/424 (47%), Gaps = 7/424 (1%)

Query: 116 VSCNAIVAGFINNKLFQQAVLLFNFF-RGSGLVPNAVTMLTVIRGCVALGSRALCELIHG 174
           +S N+ +      + +++A+  FNF  + S +   + T   +I  C ++ S    + IH 
Sbjct: 122 LSTNSYINLMCKQRHYREALDTFNFHPKNSSIQLESSTYGNLILACTSIRSLKYGKKIHD 181

Query: 175 LTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGD 234
             +K     D+ + N +L+MY     L  A + F  M+ ++V+SWT M+  +       D
Sbjct: 182 HILKSNCQPDLVLQNHILNMYGKCGSLKDARKAFDTMQLRNVVSWTIMISGYSQNGQEND 241

Query: 235 ALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIA 294
           A+ ++ +M +S    D +   ++I    I GD+  G+QLH  V+  G    L   N++I+
Sbjct: 242 AIIMYIQMLQSGYFPDPLTFGSIIKACCIAGDIDLGRQLHGHVIKSGYDHHLIAQNALIS 301

Query: 295 MYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSI 354
           MY++ G +  +  VF  I+ K L+SW ++I+G+ Q G   EAL  F  M ++     +  
Sbjct: 302 MYTRFGQIVHASDVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFRQGFYQPNEF 361

Query: 355 TLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM 414
              S+ +A   L   E   Q+HG+  + G  R       L   Y+K G +  A   F ++
Sbjct: 362 IFGSVFSACRSLLEPEFGRQIHGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAIRAFYQI 421

Query: 415 GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDG 474
               D+VSWN II  +  +G    A+  + +M  TG +PD  T+LS+L ACG     N G
Sbjct: 422 E-SPDLVSWNAIIAAFSDSGDVNEAIYFFCQMMHTGLMPDGITFLSLLCACGSPVTINQG 480

Query: 475 LVIFNQMIEENKVKPSQEHYGC--VVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSG 532
             I + +I   K+   +E   C  ++ +  +   L DA  +   + E      W A+LS 
Sbjct: 481 TQIHSYII---KIGLDKEAAVCNSLLTMYTKCSNLHDAFNVFKDVSENANLVSWNAILSA 537

Query: 533 CVLH 536
           C+ H
Sbjct: 538 CLQH 541



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 75/172 (43%), Gaps = 19/172 (11%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D   S++L+  Y K G +K A ++F      ++VSWS +I GY+  G   +++  F  M
Sbjct: 596 VDVSVSNRLIDMYAKCGSLKHARDVFGSTQNPDIVSWSSLIVGYAQFGLGHEALNLFRMM 655

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLM-VKFGLESDLFEGLKNPYLVSCNAI 121
              G+ PN  T +GVL A + +  +E     +  M ++ G+             VSC   
Sbjct: 656 KNLGVQPNEVTYLGVLSACSHIGLVEEGWHFYNTMEIELGIPPTREH-------VSCMV- 707

Query: 122 VAGFINNKLFQQAVLLF---NFFRGSGLVPNAVTMLTVIRGCVALGSRALCE 170
                   L  +A  L+   NF +  G  P+     T++  C   G+  + E
Sbjct: 708 -------DLLARAGCLYEAENFIKKMGFNPDITMWKTLLASCKTHGNVDIAE 752


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  294 bits (752), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 176/577 (30%), Positives = 302/577 (52%), Gaps = 28/577 (4%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D + ++ LL+ Y K G +  A  LFD +PE+N+VS+  ++ GY++ G  E++   F  +
Sbjct: 82  LDTFCANVLLNLYAKLGPLAAARRLFDGMPERNMVSFVTLVQGYALRGGFEEAAGLFRRL 141

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
              G   N F +  +L     +    L   IH    K G + +                 
Sbjct: 142 QREGHEVNHFVLTTILKVLVAMDAPGLTCCIHACACKLGHDRNAFVGSSLIDAYSLCGAV 201

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +F+G+     V+  A+V+ +  N + + A+  F+  R +G  PN   + +V++  
Sbjct: 202 SHARCVFDGIIWKDAVTWTAMVSCYSENDIPEDALNTFSKMRMAGAKPNPFVLTSVLKAA 261

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
           V L S  L + IHG  +K     +  V  ++LDMY+    ++ A  +F  +   DVI W+
Sbjct: 262 VCLSSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYIEDARTVFEIIPHDDVILWS 321

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++  +        A ++F  M +S ++ +  +L  ++   A +  L  G+Q+H  V+  
Sbjct: 322 FLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAFLDLGQQIHNLVIKL 381

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           G +SEL + N+++ +Y+KC ++++S  +F  + + + VSW  II GY Q+G A +AL+ F
Sbjct: 382 GYESELFVGNALMDVYAKCRNMENSLEIFRSLRDANEVSWNTIIVGYCQSGFAEDALSVF 441

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            +MR     S   +T  S+L A    A+++  +Q+H +  ++ F     V N LI +Y+K
Sbjct: 442 QEMRAAHVLST-QVTFSSVLRACANTASIKHTVQIHSLIEKSTFNNDTIVCNSLIDTYAK 500

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CG +  A  VFE +    DVVSWN II GY ++G    AL L+++M ++   P+  T+++
Sbjct: 501 CGCIRDALKVFESI-IQCDVVSWNAIISGYALHGRATDALELFNRMNKSDTKPNDVTFVA 559

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           +L+ CG  GL N GL +FN M  ++++KPS +HY C+V LL RAG L+DA    G +   
Sbjct: 560 LLSVCGSTGLVNQGLSLFNSMTMDHRIKPSMDHYTCIVRLLGRAGRLNDALKFIGDIPST 619

Query: 521 MGPNIWRALLSGCVLH----VGRFQDAEALRSGSQKK 553
             P +WRALLS CV+H    +G+F   + L    Q +
Sbjct: 620 PSPMVWRALLSSCVVHKNVALGKFSAEKVLEIEPQDE 656



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 125/498 (25%), Positives = 235/498 (47%), Gaps = 29/498 (5%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           S L+  Y   G +  A  +FD I  K+ V+W+ ++  YS N   E ++  FS M ++G  
Sbjct: 189 SSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDIPEDALNTFSKMRMAGAK 248

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------L 106
           PN F +  VL AA  L +  L + IHG  VK   +++                      +
Sbjct: 249 PNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYIEDARTV 308

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           FE + +  ++  + +++ +  +   +QA  +F     S +VPN  ++  V++ C  +   
Sbjct: 309 FEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAFL 368

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
            L + IH L IKLG   ++ V N+++D+Y+   +++ +++IFR +   + +SW  ++  +
Sbjct: 369 DLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDANEVSWNTIIVGY 428

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
               +A DAL +F+EMR + ++   V   +++   A    +K   Q+H+ +      ++ 
Sbjct: 429 CQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQIHSLIEKSTFNNDT 488

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            + NS+I  Y+KCG +  +  VF  I +  +VSW AIISGY  +G A +AL  F +M + 
Sbjct: 489 IVCNSLIDTYAKCGCIRDALKVFESIIQCDVVSWNAIISGYALHGRATDALELFNRMNKS 548

Query: 347 KTDSVDSITLVSILTASGELAALEICLQL-HGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
            T   D +T V++L+  G    +   L L + +  +           C++    + G ++
Sbjct: 549 DTKPND-VTFVALLSVCGSTGLVNQGLSLFNSMTMDHRIKPSMDHYTCIVRLLGRAGRLN 607

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALY--HKMTETGEVPDSSTYLSILN 463
            A     ++      + W  ++    V  H   AL  +   K+ E  E  D +TY+ + N
Sbjct: 608 DALKFIGDIPSTPSPMVWRALLSSCVV--HKNVALGKFSAEKVLEI-EPQDETTYVLLSN 664

Query: 464 ACGHAGLTNDGLVIFNQM 481
               AG+ +   ++   M
Sbjct: 665 MYAAAGILDQVALLRKSM 682



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 130/266 (48%), Gaps = 11/266 (4%)

Query: 250 DTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL--SNSIIAMYSKCGDLDSSRS 307
           D+ A   L+      GD + G+ +HA+VV  G  ++L    +N ++ +Y+K G L ++R 
Sbjct: 46  DSYACARLLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNLYAKLGPLAAARR 105

Query: 308 VFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELA 367
           +F+ + E+++VS+  ++ GY   G   EA   F ++++E  + V+   L +IL     + 
Sbjct: 106 LFDGMPERNMVSFVTLVQGYALRGGFEEAAGLFRRLQREGHE-VNHFVLTTILKVLVAMD 164

Query: 368 ALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
           A  +   +H  A + G  R   V + LI +YS CG V  A  VF+ +   +D V+W  ++
Sbjct: 165 APGLTCCIHACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDGI-IWKDAVTWTAMV 223

Query: 428 YGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA--CGHAGLTNDGLVIFNQMIEEN 485
             Y  N   E AL  + KM   G  P+     S+L A  C  + +   G+          
Sbjct: 224 SCYSENDIPEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGI----HGCAVK 279

Query: 486 KVKPSQEHY-GCVVDLLARAGCLSDA 510
            +  ++ H  G ++D+ A+ G + DA
Sbjct: 280 TLCDTEPHVGGALLDMYAKCGYIEDA 305


>gi|297833028|ref|XP_002884396.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330236|gb|EFH60655.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 882

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 183/591 (30%), Positives = 310/591 (52%), Gaps = 35/591 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + L+  Y + G +  A  +FDE+P +++VSW+ +I GYS +G++E++++ +  + 
Sbjct: 140 DLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELR 199

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE--SDLFEGLKNPYL------ 115
            S ++P+SFT+  VL A A L  ++  + +HG  +K G+   S +  GL   YL      
Sbjct: 200 NSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKSGVNSVSVVNNGLLAMYLKFSRPT 259

Query: 116 --------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                         V+ N ++ G++  ++ +++V +F         P+ +T+ +V+  C 
Sbjct: 260 DARRVFDEMVVRDSVTYNTMICGYLKLEMVEESVKMF-LENLDQFKPDILTVTSVLCACG 318

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            L   +L + I+   ++ G +L+ +V N ++D+Y+   D+  A  +F  MECKD +SW  
Sbjct: 319 HLRDLSLAKYIYNYMLRAGFVLESTVKNILIDVYAKCGDMITARDVFNSMECKDTVSWNS 378

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++  ++      +A+K+F+ M       D +  L LIS++  L DLK GK LH+  +  G
Sbjct: 379 IISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLSTRLADLKFGKGLHSNGIKSG 438

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           +  +L +SN++I MY+KCG++  S  +FN +     V+W  +IS  V+ G     L    
Sbjct: 439 IYIDLSVSNALIDMYAKCGEVGDSLKIFNSMGTLDTVTWNTVISACVRFGDFATGLQVTT 498

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +MR+ K    D  T +  L     LAA  +  ++H      G+     + N LI  YSKC
Sbjct: 499 QMRKNKV-VPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKC 557

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G ++ ++ VFE M   RDVV+W  +IY YG+ G GE AL  +  M ++G VPDS  ++++
Sbjct: 558 GCLESSFRVFERMS-RRDVVTWTGMIYAYGMYGEGEKALESFVDMEKSGIVPDSVVFIAL 616

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           + AC H+GL   GL  F +M    K+ P  EHY CVVDLL+R+  +S A      +    
Sbjct: 617 IYACSHSGLVEKGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIEP 676

Query: 522 GPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIKI----PGISFLNSTS 568
             +IW ++L  C    G  + AE +      + II++    PG S L S +
Sbjct: 677 DASIWASVLRACRTS-GDMETAERV-----SRRIIELNPDDPGYSILASNA 721



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 141/482 (29%), Positives = 246/482 (51%), Gaps = 26/482 (5%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEI-PEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSG 66
           S KL+  Y        + ++F  + P KNV  W+ +I  +S NG+  K+++ +  +  S 
Sbjct: 42  SGKLIDKYSHFRAPASSLSVFRRVSPAKNVYIWNSIIRAFSKNGWFPKALEFYGKLRESK 101

Query: 67  LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPY---------- 114
           + P+ +T   V+ A AGL + E+   ++  +++ G ESDL+ G  L + Y          
Sbjct: 102 VSPDKYTFPSVIKACAGLFDAEMGDLVYKQILEMGFESDLYVGNALVDMYSRMGLLSRAR 161

Query: 115 ----------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
                     LVS N++++G+ ++  +++A+ +++  R S +VP++ T+ +V+     L 
Sbjct: 162 QVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELRNSWIVPDSFTVSSVLPAFANLL 221

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
                + +HG T+K G+     VNN +L MY        A ++F EM  +D +++  M+ 
Sbjct: 222 VVKQGQGLHGFTLKSGVNSVSVVNNGLLAMYLKFSRPTDARRVFDEMVVRDSVTYNTMIC 281

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            ++  E   +++K+F E    +   D + + +++     L DL   K ++  ++  G   
Sbjct: 282 GYLKLEMVEESVKMFLE-NLDQFKPDILTVTSVLCACGHLRDLSLAKYIYNYMLRAGFVL 340

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           E  + N +I +Y+KCGD+ ++R VFN +  K  VSW +IISGY+Q+G   EA+  F KM 
Sbjct: 341 ESTVKNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLF-KMM 399

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
               +  D IT + +++ S  LA L+    LH    ++G     SV N LI  Y+KCG V
Sbjct: 400 MIMEEQADHITYLMLISLSTRLADLKFGKGLHSNGIKSGIYIDLSVSNALIDMYAKCGEV 459

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
             +  +F  MG L D V+WNT+I      G   T L +  +M +   VPD +T+L  L  
Sbjct: 460 GDSLKIFNSMGTL-DTVTWNTVISACVRFGDFATGLQVTTQMRKNKVVPDMATFLVTLPM 518

Query: 465 CG 466
           C 
Sbjct: 519 CA 520



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 145/518 (27%), Positives = 248/518 (47%), Gaps = 55/518 (10%)

Query: 80  AAAGLQNLELARSIHGLMVKFGLE-SDLFEG------------------------LKNPY 114
           A +   NL   R IH L++  GL+ SD F G                         KN Y
Sbjct: 13  ALSSSSNLNELRRIHALVISLGLDGSDFFSGKLIDKYSHFRAPASSLSVFRRVSPAKNVY 72

Query: 115 LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHG 174
           +   N+I+  F  N  F +A+  +   R S + P+  T  +VI+ C  L    + +L++ 
Sbjct: 73  I--WNSIIRAFSKNGWFPKALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYK 130

Query: 175 LTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGD 234
             +++G   D+ V N+++DMYS +  L  A Q+F EM  +D++SW  ++  +    Y  +
Sbjct: 131 QILEMGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLISGYSSHGYYEE 190

Query: 235 ALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIA 294
           AL+I+ E+R S I+ D+  + +++   A L  +K+G+ LH   +  G+ S   ++N ++A
Sbjct: 191 ALEIYHELRNSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKSGVNSVSVVNNGLLA 250

Query: 295 MYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV--D 352
           MY K      +R VF+++  +  V++  +I GY++     E + + +KM  E  D    D
Sbjct: 251 MYLKFSRPTDARRVFDEMVVRDSVTYNTMICGYLK----LEMVEESVKMFLENLDQFKPD 306

Query: 353 SITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFE 412
            +T+ S+L A G L  L +   ++     AGF    +V+N LI  Y+KCG++  A  VF 
Sbjct: 307 ILTVTSVLCACGHLRDLSLAKYIYNYMLRAGFVLESTVKNILIDVYAKCGDMITARDVFN 366

Query: 413 EMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTN 472
            M   +D VSWN+II GY  +G    A+ L+  M    E  D  TYL +++       T 
Sbjct: 367 SME-CKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLS-----TR 420

Query: 473 DGLVIFNQMIEENKVKP----SQEHYGCVVDLLARAGCLSDASGLAGKLLEGMG---PNI 525
              + F + +  N +K            ++D+ A+ G + D+     K+   MG      
Sbjct: 421 LADLKFGKGLHSNGIKSGIYIDLSVSNALIDMYAKCGEVGDSL----KIFNSMGTLDTVT 476

Query: 526 WRALLSGCVLHVGRFQD-AEALRSGSQKKGIIKIPGIS 562
           W  ++S CV    RF D A  L+  +Q +    +P ++
Sbjct: 477 WNTVISACV----RFGDFATGLQVTTQMRKNKVVPDMA 510



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 136/508 (26%), Positives = 247/508 (48%), Gaps = 41/508 (8%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           LL+ Y K  +  +A  +FDE+  ++ V+++ +I GY      E+S+K F    L    P+
Sbjct: 248 LLAMYLKFSRPTDARRVFDEMVVRDSVTYNTMICGYLKLEMVEESVKMFLEN-LDQFKPD 306

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFG--LES--------------------DLFE 108
             T+  VL A   L++L LA+ I+  M++ G  LES                    D+F 
Sbjct: 307 ILTVTSVLCACGHLRDLSLAKYIYNYMLRAGFVLESTVKNILIDVYAKCGDMITARDVFN 366

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            ++    VS N+I++G+I +    +A+ LF          + +T L +I     L     
Sbjct: 367 SMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLSTRLADLKF 426

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
            + +H   IK G+ +D+SV+N+++DMY+   ++  +++IF  M   D ++W  ++   V 
Sbjct: 427 GKGLHSNGIKSGIYIDLSVSNALIDMYAKCGEVGDSLKIFNSMGTLDTVTWNTVISACVR 486

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
           F      L++  +MRK++++ D    L  + + A L   + GK++H  ++  G +SEL++
Sbjct: 487 FGDFATGLQVTTQMRKNKVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQI 546

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
            N++I MYSKCG L+SS  VF +++ + +V+WT +I  Y   G   +AL  F+ M  EK+
Sbjct: 547 GNALIEMYSKCGCLESSFRVFERMSRRDVVTWTGMIYAYGMYGEGEKALESFVDM--EKS 604

Query: 349 DSV-DSITLVSILTASGELAALEICLQLHGIA-FEAGFPRYR-----SVQNCLISSYSKC 401
             V DS+  ++++ A      +E      G+A FE     Y+         C++   S+ 
Sbjct: 605 GIVPDSVVFIALIYACSHSGLVE-----KGLACFEKMKTHYKIDPMIEHYACVVDLLSRS 659

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
             +  A    + M    D   W +++     +G  ETA  +  ++ E    PD   Y SI
Sbjct: 660 QKISKAEEFIQAMPIEPDASIWASVLRACRTSGDMETAERVSRRIIELN--PDDPGY-SI 716

Query: 462 LNACGHAGLTN-DGLVIFNQMIEENKVK 488
           L +  +A L   D + +  + + +  +K
Sbjct: 717 LASNAYAALRKWDKVSLIRKSVRDKHIK 744



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/291 (20%), Positives = 124/291 (42%), Gaps = 53/291 (18%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C D  + + ++S Y +SG + EA                               MK F  
Sbjct: 370 CKDTVSWNSIISGYIQSGDLMEA-------------------------------MKLFKM 398

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL--------------- 106
           MM+     +  T + ++  +  L +L+  + +H   +K G+  DL               
Sbjct: 399 MMIMEEQADHITYLMLISLSTRLADLKFGKGLHSNGIKSGIYIDLSVSNALIDMYAKCGE 458

Query: 107 -------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                  F  +     V+ N +++  +    F   + +    R + +VP+  T L  +  
Sbjct: 459 VGDSLKIFNSMGTLDTVTWNTVISACVRFGDFATGLQVTTQMRKNKVVPDMATFLVTLPM 518

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C +L ++ L + IH   ++ G   ++ + N++++MYS    L+++ ++F  M  +DV++W
Sbjct: 519 CASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLESSFRVFERMSRRDVVTW 578

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG 270
           T M+  +  +     AL+ F +M KS I+ D+V  + LI   +  G +++G
Sbjct: 579 TGMIYAYGMYGEGEKALESFVDMEKSGIVPDSVVFIALIYACSHSGLVEKG 629



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/221 (21%), Positives = 96/221 (43%), Gaps = 28/221 (12%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           ID   S+ L+  Y K G++ ++  +F+ +   + V+W+ VI      G     ++  + M
Sbjct: 441 IDLSVSNALIDMYAKCGEVGDSLKIFNSMGTLDTVTWNTVISACVRFGDFATGLQVTTQM 500

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------- 106
             + ++P+  T +  L   A L    L + IH  +++FG ES+L                
Sbjct: 501 RKNKVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCL 560

Query: 107 ------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                 FE +    +V+   ++  +      ++A+  F     SG+VP++V  + +I  C
Sbjct: 561 ESSFRVFERMSRRDVVTWTGMIYAYGMYGEGEKALESFVDMEKSGIVPDSVVFIALIYAC 620

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDL 201
              G   L E   GL     +     + + +++ Y+C++DL
Sbjct: 621 SHSG---LVE--KGLACFEKMKTHYKI-DPMIEHYACVVDL 655


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 181/570 (31%), Positives = 299/570 (52%), Gaps = 28/570 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + ++ L+  Y K  +  +++ LFDEIPE+NVVSW+ +   Y    F  +++  F  M+
Sbjct: 191 DVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMV 250

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
           LSG+ PN F++  ++ A  GL++    + IHG ++K G + D                  
Sbjct: 251 LSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLA 310

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +FE +K P +VS NA++AG + ++  +QA+ L    + SG+ PN  T+ + ++ C 
Sbjct: 311 DAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACA 370

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            +G + L   +H   +K+ +  D+ V+  ++DMYS    L+ A   F  +  KD+I+W  
Sbjct: 371 GMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNA 430

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++  +  +    +AL +F EM K  I  +   L  ++   A L  +   +Q+H   V  G
Sbjct: 431 IISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSG 490

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
             S++ + NS+I  Y KC  ++ +  +F + T   LVS+T++I+ Y Q G   EAL  F+
Sbjct: 491 FHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFL 550

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +M Q+     D     S+L A   L+A E   QLH    + GF       N L++ Y+KC
Sbjct: 551 EM-QDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKC 609

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G++D A   F E+   R +VSW+ +I G   +GHG  AL L+++M + G  P+  T +S+
Sbjct: 610 GSIDDAGRAFSELT-ERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSV 668

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L AC HAGL  +  + F  M E    KP QEHY C++DLL RAG +++A  L  K+    
Sbjct: 669 LGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEA 728

Query: 522 GPNIWRALLSGCVLHVGRFQDAEALRSGSQ 551
             ++W ALL    +H    +D E  R  ++
Sbjct: 729 NASVWGALLGAARIH----KDVELGRRAAE 754



 Score =  261 bits (666), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 181/583 (31%), Positives = 298/583 (51%), Gaps = 45/583 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           DP   + L++ Y K      A  L DE  E ++VSWS +I GY+ NG    ++ AF  M 
Sbjct: 90  DPSIRNHLINLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMH 149

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
           L G+  N FT   VL A + +++L + + +HG++V  G E D                  
Sbjct: 150 LLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFL 209

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               LF+ +    +VS NA+ + ++      +AV LF     SG+ PN  ++ +++  C 
Sbjct: 210 DSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACT 269

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            L   +  ++IHG  IKLG   D    N+++DMY+ + DL  AI +F +++  D++SW  
Sbjct: 270 GLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNA 329

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++   V  E+   AL++  +M++S I  +   L + +   A +G  + G+QLH+ ++   
Sbjct: 330 VIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMD 389

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           ++S+L +S  ++ MYSKC  L+ +R  FN + EK L++W AIISGY Q     EAL+ F+
Sbjct: 390 MESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFV 449

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +M +E     +  TL +IL ++  L  + +C Q+HG++ ++GF     V N LI SY KC
Sbjct: 450 EMHKEGI-GFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKC 508

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
            +V+ A  +FEE   + D+VS+ ++I  Y   G GE AL L+ +M +    PD     S+
Sbjct: 509 SHVEDAERIFEECT-IGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSL 567

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLL---------ARAGCLSDASG 512
           LNAC +      G  +   +++          YG V+D+          A+ G + DA G
Sbjct: 568 LNACANLSAFEQGKQLHVHILK----------YGFVLDIFAGNSLVNMYAKCGSIDDA-G 616

Query: 513 LAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGI 555
            A   L   G   W A++ G   H G  + A  L +   K+G+
Sbjct: 617 RAFSELTERGIVSWSAMIGGLAQH-GHGRQALQLFNQMLKEGV 658



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 115/414 (27%), Positives = 200/414 (48%), Gaps = 7/414 (1%)

Query: 133 QAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVL 192
           Q   + N        P +V+   ++  C    S      IH    K GL  D S+ N ++
Sbjct: 39  QTTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLI 98

Query: 193 DMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTV 252
           ++YS   +   A ++  E    D++SW+ ++  +      G AL  F EM    + C+  
Sbjct: 99  NLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEF 158

Query: 253 ALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQI 312
              +++   +I+ DL+ GKQ+H  VV+ G + ++ ++N+++ MY+KC +   S+ +F++I
Sbjct: 159 TFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEI 218

Query: 313 TEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEIC 372
            E+++VSW A+ S YVQ     EA+  F +M        +  +L S++ A   L      
Sbjct: 219 PERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKP-NEFSLSSMVNACTGLRDSSRG 277

Query: 373 LQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGV 432
             +HG   + G+       N L+  Y+K G++  A  VFE++    D+VSWN +I G  +
Sbjct: 278 KIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIK-QPDIVSWNAVIAGCVL 336

Query: 433 NGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQE 492
           + H E AL L  +M  +G  P+  T  S L AC   GL   G  + + +++ +       
Sbjct: 337 HEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFV 396

Query: 493 HYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEAL 546
             G +VD+ ++   L DA  +A  LL       W A++SG   +   ++D EAL
Sbjct: 397 SVG-LVDMYSKCDLLEDAR-MAFNLLPEKDLIAWNAIISG---YSQYWEDMEAL 445



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 2/84 (2%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  + L++ Y K G I +A   F E+ E+ +VSWS +I G + +G   ++++ F+ M
Sbjct: 594 LDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQM 653

Query: 63  MLSGLLPNSFTMVGVLVAA--AGL 84
           +  G+ PN  T+V VL A   AGL
Sbjct: 654 LKEGVSPNHITLVSVLGACNHAGL 677


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 185/617 (29%), Positives = 307/617 (49%), Gaps = 58/617 (9%)

Query: 3    IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
            ID    +KL+  Y   G + +   +FD+I    V  W++++  Y+  G   +S+  F  M
Sbjct: 402  IDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKM 461

Query: 63   MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
               G++ N +T   VL   A L  ++  + +HG ++K G  S+                 
Sbjct: 462  QKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGV 521

Query: 106  -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                 LF+ L  P +VS N+++ G + N      + +F      G+  +  T+++V+   
Sbjct: 522  ESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAW 581

Query: 161  VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
              +G+ +L   +HG  +K     +V  +N++LDMYS   +L+ A ++F +M    ++SWT
Sbjct: 582  ANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWT 641

Query: 221  RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
              +  +V      DA+ +F EM+   +  D   + +++   A    L +G+ +H+ V+  
Sbjct: 642  STIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKN 701

Query: 281  GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
            G+ S L ++N++I MY+KCG ++ +R VF++I  K +VSW  +I GY QN    EAL  F
Sbjct: 702  GMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELF 761

Query: 341  IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            + M  +K    D IT+  +L A   LAAL+   ++HG     G+     V   L+  Y+K
Sbjct: 762  LDM--QKQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAK 819

Query: 401  CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
            CG + LA ++F +M   +D++SW  +I GYG++G G  A++ +++M   G  PD S++  
Sbjct: 820  CGLLVLAQLLF-DMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSV 878

Query: 461  ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
            ILNAC H+GL N+G   FN M  E  V+P  EHY CVVDLLAR G LS A      +   
Sbjct: 879  ILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIK 938

Query: 521  MGPNIWRALLSGCVLH---------------------------------VGRFQDAEALR 547
                IW  LLSGC +H                                   ++++ + LR
Sbjct: 939  PDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLR 998

Query: 548  SGSQKKGIIKIPGISFL 564
               QK+G  + PG S++
Sbjct: 999  KRMQKRGFKQNPGCSWI 1015



 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 162/584 (27%), Positives = 274/584 (46%), Gaps = 64/584 (10%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKN-------VVSWSIVIHGYSINGFHE 53
           P   PY++ K  SNY K         +F + P +         VS S     +S+     
Sbjct: 284 PTSSPYHTHKTTSNYTKKS---HNRFIFFKQPRRTCLLHSTVCVSPSFTNTTHSVTQNQN 340

Query: 54  KSMKAFSHMMLSGLLPNSFTMV--------------GVLVAAAGLQNLELARSIHGLMVK 99
             +  F  M   G L N+  ++               VL   A  ++LE  + +H +++ 
Sbjct: 341 AKINKFCEM---GDLRNAIELLTKSKSYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIIS 397

Query: 100 FGLESDLFEGLKNPYL-VSCNAIVAG------FINNKL---------------FQQAVLL 137
            G+  D   G K  ++ V+C  +V G       +N+K+               F+++V L
Sbjct: 398 NGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSL 457

Query: 138 FNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSC 197
           F   +  G+V N  T   V++   ALG    C+ +HG  +KLG   + +V NS++  Y  
Sbjct: 458 FKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFK 517

Query: 198 LMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNL 257
              +++A  +F E+   DV+SW  M+   V   ++G+ L+IF +M    +  D   L+++
Sbjct: 518 FGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSV 577

Query: 258 ISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSL 317
           +   A +G+L  G+ LH   V      E+  SN+++ MYSKCG+L+ +  VF ++ + ++
Sbjct: 578 LVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTI 637

Query: 318 VSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHG 377
           VSWT+ I+ YV+ G   +A+  F +M Q K    D  T+ SI+ A    ++L+    +H 
Sbjct: 638 VSWTSTIAAYVREGLYSDAIGLFDEM-QSKGVRPDIYTVTSIVHACACSSSLDKGRDVHS 696

Query: 378 IAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGE 437
              + G      V N LI+ Y+KCG+V+ A +VF ++  ++D+VSWNT+I GY  N    
Sbjct: 697 YVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIP-VKDIVSWNTMIGGYSQNSLPN 755

Query: 438 TALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGC- 496
            AL L+  M +  + PD  T   +L AC      + G  I   ++       S  H  C 
Sbjct: 756 EALELFLDMQKQFK-PDDITMACVLPACAGLAALDKGREIHGHILRRGYF--SDLHVACA 812

Query: 497 VVDLLARAGCLSDASGLAGKLLEGMGPNI----WRALLSGCVLH 536
           +VD+ A+ G L     +  +LL  M P      W  +++G  +H
Sbjct: 813 LVDMYAKCGLL-----VLAQLLFDMIPKKDLISWTVMIAGYGMH 851


>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 823

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 176/570 (30%), Positives = 303/570 (53%), Gaps = 28/570 (4%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D + ++ LL+ Y K G +  A  LFD +PE+N VS+  ++ GY++ G  E++++ F  +
Sbjct: 80  LDTFCANVLLNFYAKLGPLATARRLFDGMPERNRVSFVTLMQGYALRGEFEEALELFRRL 139

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
              G   N F +  +L     +    LA  IH    K G + +                 
Sbjct: 140 QREGHEVNHFVLTTILKVLVTMDAPGLACGIHACACKLGHDRNAFVGTALIDAYSLCGAV 199

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +F+G+     V+  A+V+ +  N + + A+  F+  R +G  PN   + + ++  
Sbjct: 200 CHARCVFDGIVGKDAVTWTAMVSCYSENDIPEYALNTFSKMRMTGFKPNPFVLTSALKAA 259

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
           V L S  L + IHG ++K     +  V  ++LDMY+   D++ A  IF  +   DVI W+
Sbjct: 260 VCLSSALLGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGDIEDAHAIFEMIPHDDVILWS 319

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++  +        A ++F  M +S ++ +  +L  ++   A +  L+ G+Q+H   +  
Sbjct: 320 FLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACANIAFLELGEQIHNLAIKL 379

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           G +SEL + N+++ MY+KC ++++S  +F+ + + + VSW  II GY Q+G A +AL+ F
Sbjct: 380 GYESELFVGNALMDMYAKCRNMENSLEIFSSLQDANEVSWNTIIVGYCQSGFAEDALSVF 439

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            +MR     S   +T  S+L A    ++++  +Q+H +  ++ F     V N LI +Y+K
Sbjct: 440 HEMRAAHMLST-QVTFSSVLRACANTSSIKHAVQIHSLIEKSTFNNDTIVCNSLIDTYAK 498

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CG +  A  VFE +    DVVSWN+II  Y ++G    AL L+ +M ++    +  T++S
Sbjct: 499 CGFIRDALKVFESIVEC-DVVSWNSIISAYALHGRATNALELFDRMNKSDIKANDVTFVS 557

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           +L+ CG  GL N GL +FN M+ ++++KPS EHY C+V LL RAG L+DA    G +   
Sbjct: 558 LLSVCGSTGLVNQGLWLFNSMMMDHRIKPSMEHYTCIVRLLGRAGRLTDALKFIGDIPST 617

Query: 521 MGPNIWRALLSGCVLH----VGRFQDAEAL 546
             P +WRALLS CV+H    +GR+   + L
Sbjct: 618 PSPMVWRALLSSCVVHKNVALGRYAAEKVL 647



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 125/255 (49%), Gaps = 13/255 (5%)

Query: 265 GDLKRGKQLHAQVVLGGLQSELRL--SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTA 322
           GD + G+ +HA+VV  G  ++L    +N ++  Y+K G L ++R +F+ + E++ VS+  
Sbjct: 59  GDARAGRAVHARVVQRGGVAQLDTFCANVLLNFYAKLGPLATARRLFDGMPERNRVSFVT 118

Query: 323 IISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEA 382
           ++ GY   G   EAL  F ++++E  + V+   L +IL     + A  +   +H  A + 
Sbjct: 119 LMQGYALRGEFEEALELFRRLQREGHE-VNHFVLTTILKVLVTMDAPGLACGIHACACKL 177

Query: 383 GFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFL-RDVVSWNTIIYGYGVNGHGETALA 441
           G  R   V   LI +YS CG V  A  VF+  G + +D V+W  ++  Y  N   E AL 
Sbjct: 178 GHDRNAFVGTALIDAYSLCGAVCHARCVFD--GIVGKDAVTWTAMVSCYSENDIPEYALN 235

Query: 442 LYHKMTETGEVPDSSTYLSILNA--CGHAGLTNDGLVIFNQMIEENKVKPSQEHY-GCVV 498
            + KM  TG  P+     S L A  C  + L   G+           +  ++ H  G ++
Sbjct: 236 TFSKMRMTGFKPNPFVLTSALKAAVCLSSALLGKGI----HGCSVKTLYDTEPHVGGALL 291

Query: 499 DLLARAGCLSDASGL 513
           D+ A+ G + DA  +
Sbjct: 292 DMYAKCGDIEDAHAI 306


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 181/548 (33%), Positives = 291/548 (53%), Gaps = 24/548 (4%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+S Y +    + A+ +F ++   + V+++ +I G++  G  ++++  F  M LSGL P+
Sbjct: 184 LISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPD 243

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-LFEG-LKNPYLVSCNAIVAGFINN 128
           S T+  +L A + + +L   + +H  ++K G+  D + EG L + Y+ S +   A  I +
Sbjct: 244 SVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFD 303

Query: 129 KLFQQAVLLFN------------------FFR--GSGLVPNAVTMLTVIRGCVALGSRAL 168
              +  V+L+N                  F+R   +G+ PN  T   ++R C   G   L
Sbjct: 304 SGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGL 363

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
            E IH LTIK G   D+ V+  ++DMYS    LD A +I   +E KDV+SWT M+  +V 
Sbjct: 364 GEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQ 423

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
            E+  +AL+ F+EM+   I  D + L + IS  A +  + +G Q+HA+V + G  +++ +
Sbjct: 424 HEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVSI 483

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
            N ++ +Y++CG    + S F  I  K  ++W  +ISG+ Q+G   EAL  F+KM Q   
Sbjct: 484 WNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGA 543

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
              +  T VS ++AS  LA ++   Q+H    + G+     + N LIS Y KCG+++ A 
Sbjct: 544 -KYNVFTFVSSISASANLADIKQGKQIHARVIKTGYTSETEISNALISLYGKCGSIEDAK 602

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
           + F EM   R+ VSWNTII     +G G  AL L+ +M + G  P   T++ +L AC H 
Sbjct: 603 MDFFEMT-KRNEVSWNTIITCCSQHGRGLEALDLFDQMKQQGLKPSDVTFVGVLTACSHV 661

Query: 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRA 528
           GL  +GL  F  M  E+ + P  +HY CVVD+L RAG L  A     ++       +WR 
Sbjct: 662 GLVEEGLCYFKSMSNEHGIHPRPDHYACVVDILGRAGQLDRAKRFVEEMPIPADSMVWRT 721

Query: 529 LLSGCVLH 536
           LLS C +H
Sbjct: 722 LLSACKVH 729



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 154/578 (26%), Positives = 288/578 (49%), Gaps = 32/578 (5%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+  Y K G ++ A  +F+E+  ++ VSW  V+ GY+ NG  E++++ +  M  SG++P 
Sbjct: 83  LIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQNGLGEEAVRLYREMHRSGVVPT 142

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPYL------------- 115
            + +  +L A    +  +L R IH  + K G  S+ F G  L + YL             
Sbjct: 143 PYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRVFC 202

Query: 116 -------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
                  V+ N +++G        +A+ +F+  + SGL P++VT+ +++  C A+G    
Sbjct: 203 DMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRK 262

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
            + +H   +K G+ LD  +  S+LD+Y    D++ A+QIF   +  +V+ W  M+  +  
Sbjct: 263 GKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQ 322

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
            +    +  IF  M  + +  +      ++      G++  G+Q+H+  +  G QS++ +
Sbjct: 323 IDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYV 382

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
           S  +I MYSK G LD ++ + + I EK +VSWT++I+GYVQ+   +EAL  F +M Q   
Sbjct: 383 SGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEM-QACG 441

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
              D+I L S ++A   + A+    Q+H   + +G+    S+ N L+  Y++CG    A+
Sbjct: 442 IWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVSIWNGLVYLYARCGISKEAF 501

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
             FE +   ++ ++WN +I G+  +G  E AL ++ KM + G   +  T++S ++A  + 
Sbjct: 502 SSFEAIEH-KEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANL 560

Query: 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN--IW 526
                G  I  ++I+      + E    ++ L  + G + DA        E    N   W
Sbjct: 561 ADIKQGKQIHARVIKTGYTSET-EISNALISLYGKCGSIEDAK---MDFFEMTKRNEVSW 616

Query: 527 RALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFL 564
             +++ C  H GR  +A  L    +++G +K   ++F+
Sbjct: 617 NTIITCCSQH-GRGLEALDLFDQMKQQG-LKPSDVTFV 652



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 130/478 (27%), Positives = 232/478 (48%), Gaps = 27/478 (5%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           LL  Y KSG I+EA  +FD     NVV W++++  Y       KS   F  M+ +G+ PN
Sbjct: 285 LLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPN 344

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF----------------------E 108
            FT   +L        + L   IH L +K G +SD++                      +
Sbjct: 345 KFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILD 404

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            ++   +VS  +++AG++ ++  ++A+  F   +  G+ P+ + + + I  C  + +   
Sbjct: 405 MIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQ 464

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
              IH      G   DVS+ N ++ +Y+       A   F  +E K+ I+W  ++  F  
Sbjct: 465 GSQIHARVYVSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQ 524

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
                +ALK+F +M ++    +    ++ IS +A L D+K+GKQ+HA+V+  G  SE  +
Sbjct: 525 SGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQGKQIHARVIKTGYTSETEI 584

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
           SN++I++Y KCG ++ ++  F ++T+++ VSW  II+   Q+G   EAL+ F +M+Q+  
Sbjct: 585 SNALISLYGKCGSIEDAKMDFFEMTKRNEVSWNTIITCCSQHGRGLEALDLFDQMKQQGL 644

Query: 349 DSVDSITLVSILTASGELAALE--ICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
              D +T V +LTA   +  +E  +C     ++ E G         C++    + G +D 
Sbjct: 645 KPSD-VTFVGVLTACSHVGLVEEGLCY-FKSMSNEHGIHPRPDHYACVVDILGRAGQLDR 702

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           A    EEM    D + W T++    V+ + E        + E  E  DS++Y+ + NA
Sbjct: 703 AKRFVEEMPIPADSMVWRTLLSACKVHKNLEIGEFAAKHLLEL-EPHDSASYVLLSNA 759



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 109/421 (25%), Positives = 195/421 (46%), Gaps = 5/421 (1%)

Query: 117 SCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR-ALCELIHGL 175
           S N  +AGF+     ++ + LF       +V  AV     +R C   G R  L   IH  
Sbjct: 8   SFNRPLAGFLAPDDPEKLLPLFAAKCRQYMVLGAVDFACALRACRGSGRRWPLVPEIHAK 67

Query: 176 TIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDA 235
            I  GL     + N ++D+Y+    +  A ++F E+  +D +SW  ++  +       +A
Sbjct: 68  AIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQNGLGEEA 127

Query: 236 LKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAM 295
           ++++REM +S ++     L +++S        + G+ +H QV   G  SE  + N++I++
Sbjct: 128 VRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISL 187

Query: 296 YSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSIT 355
           Y +C     +  VF  +     V++  +ISG+ Q G    AL  F +M Q    S DS+T
Sbjct: 188 YLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEM-QLSGLSPDSVT 246

Query: 356 LVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMG 415
           + S+L A   +  L    QLH    +AG      ++  L+  Y K G+++ A  +F+  G
Sbjct: 247 IASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDS-G 305

Query: 416 FLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGL 475
              +VV WN ++  YG       +  ++++M   G  P+  TY  +L  C H G    G 
Sbjct: 306 DRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGE 365

Query: 476 VIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVL 535
            I +  I +N  +      G ++D+ ++ G L  A  +   ++E      W ++++G V 
Sbjct: 366 QIHSLTI-KNGFQSDMYVSGVLIDMYSKYGWLDKAQRIL-DMIEEKDVVSWTSMIAGYVQ 423

Query: 536 H 536
           H
Sbjct: 424 H 424


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 191/612 (31%), Positives = 302/612 (49%), Gaps = 59/612 (9%)

Query: 9    SKLLSNYFKSGKIKEAENLFDEIPEKN-VVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
            +KL+  Y   G ++E   +FD I   N V  W++++  Y+  G + +S+  F  M   G+
Sbjct: 490  AKLVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGI 549

Query: 68   LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES----------------------D 105
              NS+T   +L   A L  +   + IHG + K G  S                       
Sbjct: 550  TGNSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHK 609

Query: 106  LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
            LF+ L +  +VS N++++G + N     A+  F       +  +  T++  +  C  +GS
Sbjct: 610  LFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGS 669

Query: 166  RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
             +L   +HG  +K     +V  NN++LDMYS   +L+ AIQ F +M  K V+SWT ++  
Sbjct: 670  LSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAA 729

Query: 226  FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
            +V      DA+++F EM    +  D  ++ +++   A    L +G+ +H  +    +   
Sbjct: 730  YVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALC 789

Query: 286  LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
            L +SN+++ MY+KCG ++ +  VF+QI  K +VSW  +I GY +N    EAL  F +M++
Sbjct: 790  LPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQK 849

Query: 346  EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
            E     D IT+  +L A G LAALEI   +HG     G+     V N LI  Y KCG++ 
Sbjct: 850  ESRP--DGITMACLLPACGSLAALEIGRGIHGCILRNGYSSELHVANALIDMYVKCGSLV 907

Query: 406  LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
             A ++F +M   +D+++W  +I G G++G G  A+A + KM   G  PD  T+ SIL AC
Sbjct: 908  HARLLF-DMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYAC 966

Query: 466  GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI 525
             H+GL N+G   FN MI E  ++P  EHY C+VDLLAR G LS A  L   +       I
Sbjct: 967  SHSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIKPDATI 1026

Query: 526  WRALLSGCVLH---------------------------------VGRFQDAEALRSGSQK 552
            W ALL GC +H                                   ++++ + LR    K
Sbjct: 1027 WGALLCGCRIHHDVELAEKVAEHVFELEPDNAGYYVLLANIYAEAEKWEEVKKLRERIGK 1086

Query: 553  KGIIKIPGISFL 564
            +G+ K PG S++
Sbjct: 1087 RGLKKSPGCSWI 1098



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 138/483 (28%), Positives = 237/483 (49%), Gaps = 31/483 (6%)

Query: 6    YNS--SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
            YN+  + L++ YFKSG++  A  LFDE+ +++VVSW+ +I G  +NGF   +++ F  M+
Sbjct: 587  YNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQML 646

Query: 64   LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------- 106
            +  +  +  T+V  + A A + +L L R++HG  VK     ++                 
Sbjct: 647  ILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLN 706

Query: 107  -----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                 FE +    +VS  +++A ++   L+  A+ LF      G+ P+  +M +V+  C 
Sbjct: 707  DAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACA 766

Query: 162  ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
               S      +H    K  + L + V+N+++DMY+    ++ A  +F ++  KD++SW  
Sbjct: 767  CGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNT 826

Query: 222  MMGLFVDFEYAGDALKIFREMRK-SRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+G +       +ALK+F EM+K SR   D + +  L+     L  L+ G+ +H  ++  
Sbjct: 827  MIGGYSKNSLPNEALKLFAEMQKESRP--DGITMACLLPACGSLAALEIGRGIHGCILRN 884

Query: 281  GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
            G  SEL ++N++I MY KCG L  +R +F+ I EK L++WT +ISG   +G   EA+  F
Sbjct: 885  GYSSELHVANALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATF 944

Query: 341  IKMRQEKTDSVDSITLVSILTASGELAAL-EICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
             KMR       D IT  SIL A      L E     + +  E           C++   +
Sbjct: 945  QKMRIAGIKP-DEITFTSILYACSHSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLA 1003

Query: 400  KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
            + GN+  AY + E M    D   W  ++ G  ++   E A  +   + E    PD++ Y 
Sbjct: 1004 RTGNLSKAYNLIETMPIKPDATIWGALLCGCRIHHDVELAEKVAEHVFELE--PDNAGYY 1061

Query: 460  SIL 462
             +L
Sbjct: 1062 VLL 1064



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 97/328 (29%), Positives = 167/328 (50%), Gaps = 18/328 (5%)

Query: 234 DALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSII 293
           +A+++ R  +KS +  D  A  +++ + A    L+ GK +H+ +   G+  E  L   ++
Sbjct: 436 NAVELLRMSQKSEL--DLNAYSSILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLV 493

Query: 294 AMYSKCGDLDSSRSVFNQI-TEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVD 352
            MY  CG L   R +F+ I ++  +  W  ++S Y + G  RE++  F KM Q+   + +
Sbjct: 494 FMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKM-QKLGITGN 552

Query: 353 SITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFE 412
           S T   IL     L  +  C ++HG  ++ GF  Y +V N LI++Y K G VD A+ +F+
Sbjct: 553 SYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFD 612

Query: 413 EMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTN 472
           E+G  RDVVSWN++I G  +NG   +AL  + +M       D +T ++ + AC + G  +
Sbjct: 613 ELGD-RDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLS 671

Query: 473 DGLVIFNQMIEENKVKPSQE--HYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI---WR 527
            G  +  Q +   K   S+E      ++D+ ++ G L+DA     +  E MG      W 
Sbjct: 672 LGRALHGQGV---KACFSREVMFNNTLLDMYSKCGNLNDAI----QAFEKMGQKTVVSWT 724

Query: 528 ALLSGCVLHVGRFQDAEALRSGSQKKGI 555
           +L++  V   G + DA  L    + KG+
Sbjct: 725 SLIAAYVRE-GLYDDAIRLFYEMESKGV 751


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 176/559 (31%), Positives = 303/559 (54%), Gaps = 29/559 (5%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D    SKL   Y   G +KEA  +FD++  +  + W+I+++  + +G    S+  F  M
Sbjct: 127 LDSNLGSKLALMYTNCGDLKEASRVFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKM 186

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL-------------------- 102
           M SG+  +S+T   V  + + L+++     +HG ++K G                     
Sbjct: 187 MSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRV 246

Query: 103 --ESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +F+ +    ++S N+I+ G+++N L ++ + +F     SG+  +  T+++V  GC
Sbjct: 247 DSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGC 306

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
                 +L   +H   +K     +    N++LDMYS   DLD+A  +FREM  + V+S+T
Sbjct: 307 ADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYT 366

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDT---VALLNLISVNAILGDLKRGKQLHAQV 277
            M+  +     AG+A+K+F EM +  I  D     A+LN  + N +L +   GK++H  +
Sbjct: 367 SMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDE---GKRVHEWI 423

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
               +  ++ +SN+++ MY+KCG +  +  VF+++  K ++SW  +I GY +N  A EAL
Sbjct: 424 KENDMGFDIFVSNALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGGYSKNCYANEAL 483

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
           + F  +  EK  S D  T+  +L A   L+A +   ++HG     G+   R V N L+  
Sbjct: 484 SLFNLLLVEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDM 543

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           Y+KCG + LA ++F+++   +D+VSW  +I GYG++G G+ A+AL+++M + G  PD  +
Sbjct: 544 YAKCGALLLARLLFDDIT-SKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEIS 602

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL 517
           ++S+L AC H+GL ++G   FN M  E K++P+ EHY C+VD+LAR G LS A      +
Sbjct: 603 FVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGNLSKAYRFIENM 662

Query: 518 LEGMGPNIWRALLSGCVLH 536
                  IW ALL GC +H
Sbjct: 663 PIPPDATIWGALLCGCRIH 681



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 134/482 (27%), Positives = 234/482 (48%), Gaps = 39/482 (8%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L++ Y K+ ++  A  +FDE+ E++V+SW+ +I+GY  NG  EK +  F  M+ SG+  +
Sbjct: 236 LVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEID 295

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVK--FGLESDLFEGLKNPY-------------- 114
             T+V V    A  + + L R++H   VK  F  E      L + Y              
Sbjct: 296 LATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFR 355

Query: 115 ------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
                 +VS  +++AG+    L  +AV LF      G+ P+  T+  V+  C    +R L
Sbjct: 356 EMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCAR--NRLL 413

Query: 169 CE--LIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
            E   +H    +  +  D+ V+N+++DMY+    +  A  +F EM  KD+ISW  ++G +
Sbjct: 414 DEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGGY 473

Query: 227 VDFEYAGDALKIFREMR-KSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
               YA +AL +F  +  + R   D   +  ++   A L    +G+++H  ++  G  S+
Sbjct: 474 SKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSD 533

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
             ++NS++ MY+KCG L  +R +F+ IT K LVSWT +I+GY  +G  +EA+  F +MRQ
Sbjct: 534 RHVANSLVDMYAKCGALLLARLLFDDITSKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQ 593

Query: 346 EKTDSVDSITLVSILTASGELAALE-----ICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
              +  D I+ VS+L A      ++       +  H    E     Y     C++   ++
Sbjct: 594 AGIEP-DEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHY----ACIVDMLAR 648

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
            GN+  AY   E M    D   W  ++ G  ++   + A  +  K+ E    P+++ Y  
Sbjct: 649 TGNLSKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAERVAEKVFELE--PENTGYYV 706

Query: 461 IL 462
           ++
Sbjct: 707 LM 708



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 109/388 (28%), Positives = 194/388 (50%), Gaps = 25/388 (6%)

Query: 141 FRGSGLVPNAVTMLTVIRGCVALGSRALCELIH---------------GLTIKLGLILDV 185
           F  SG + NAV +L V  G   +  R LC ++                      G +LD 
Sbjct: 71  FCESGNLKNAVKLLHV-SGKWDIDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVLDS 129

Query: 186 SVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGD---ALKIFREM 242
           ++ + +  MY+   DL  A ++F +++ +  + W  +M    +   +GD   ++ +F++M
Sbjct: 130 NLGSKLALMYTNCGDLKEASRVFDQVKIEKALFWNILMN---ELAKSGDFSGSIGLFKKM 186

Query: 243 RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDL 302
             S +  D+     +    + L  +  G+QLH  ++  G      + NS++A Y K   +
Sbjct: 187 MSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRV 246

Query: 303 DSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTA 362
           DS+R VF+++TE+ ++SW +II+GYV NG A + L+ F++M     + +D  T+VS+   
Sbjct: 247 DSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIE-IDLATIVSVFAG 305

Query: 363 SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVS 422
             +   + +   +H    +A F R     N L+  YSKCG++D A +VF EM   R VVS
Sbjct: 306 CADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSG-RSVVS 364

Query: 423 WNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMI 482
           + ++I GY   G    A+ L+ +M E G  PD  T  ++LN C    L ++G  + ++ I
Sbjct: 365 YTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRV-HEWI 423

Query: 483 EENKVKPSQEHYGCVVDLLARAGCLSDA 510
           +EN +         ++D+ A+ G + +A
Sbjct: 424 KENDMGFDIFVSNALMDMYAKCGSMREA 451


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 180/555 (32%), Positives = 295/555 (53%), Gaps = 24/555 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + ++ L+  Y K G + ++  LF  I E+NVVSW+ +   Y  +    +++  F  M+
Sbjct: 116 DGFVANTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMV 175

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
            SG++PN F++  +L A AGLQ  +L R IHGLM+K GL+ D                  
Sbjct: 176 RSGIMPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIE 235

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +F+ + +P +VS NAI+AG + +     A++L +  +GSG  PN  T+ + ++ C 
Sbjct: 236 GAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACA 295

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
           A+G + L   +H   IK+    D+     ++DMYS    +D A + +  M  KD+I+W  
Sbjct: 296 AMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNA 355

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++  +       DA+ +F +M    I  +   L  ++   A L  +K  KQ+H   +  G
Sbjct: 356 LISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSG 415

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           + S+  + NS++  Y KC  +D +  +F + T + LV++T++I+ Y Q G   EAL  ++
Sbjct: 416 IYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYL 475

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +M Q+     D     S+L A   L+A E   QLH  A + GF       N L++ Y+KC
Sbjct: 476 QM-QDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFMCDIFASNSLVNMYAKC 534

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G+++ A   F E+   R +VSW+ +I GY  +GHG+ AL L+++M   G  P+  T +S+
Sbjct: 535 GSIEDADRAFSEIPN-RGIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGVPPNHITLVSV 593

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L AC HAGL N+G   F +M     +KP+QEHY C++DLL R+G L++A  L   +    
Sbjct: 594 LCACNHAGLVNEGKQYFEKMEVMFGIKPTQEHYACMIDLLGRSGKLNEAVELVNSIPFEA 653

Query: 522 GPNIWRALLSGCVLH 536
              +W ALL    +H
Sbjct: 654 DGFVWGALLGAARIH 668



 Score =  254 bits (649), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 174/569 (30%), Positives = 289/569 (50%), Gaps = 35/569 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           DP   + L++ Y K  +   A  L DE  E +VVSWS ++ GY  NGF E+++  F+ M 
Sbjct: 15  DPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNGFVEEALLVFNEMC 74

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
           L G+  N FT   VL A +  ++L + R +HG+ V  G ESD                  
Sbjct: 75  LLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLD 134

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               LF G+    +VS NA+ + ++ ++L  +AV LF     SG++PN  ++  ++  C 
Sbjct: 135 DSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACA 194

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            L    L   IHGL +K+GL LD    N+++DMYS   +++ A+ +F+++   DV+SW  
Sbjct: 195 GLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNA 254

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++   V  +    AL +  EM+ S    +   L + +   A +G  + G+QLH+ ++   
Sbjct: 255 IIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMD 314

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
             S+L  +  ++ MYSKC  +D +R  ++ + +K +++W A+ISGY Q G   +A++ F 
Sbjct: 315 AHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFS 374

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           KM  E  D  +  TL ++L +   L A+++C Q+H I+ ++G      V N L+ +Y KC
Sbjct: 375 KMFSEDID-FNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKC 433

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
            ++D A  +FEE  +  D+V++ ++I  Y   G GE AL LY +M +    PD     S+
Sbjct: 434 NHIDEASKIFEERTW-EDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSL 492

Query: 462 LNACGHAGLTNDGLVIFNQMIEEN---KVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
           LNAC +      G  +    I+      +  S      +V++ A+ G + DA   A   +
Sbjct: 493 LNACANLSAYEQGKQLHVHAIKFGFMCDIFASNS----LVNMYAKCGSIEDAD-RAFSEI 547

Query: 519 EGMGPNIWRALLSGCVLHVGRFQDAEALR 547
              G   W A++ G   H       EALR
Sbjct: 548 PNRGIVSWSAMIGGYAQHG---HGKEALR 573



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 137/509 (26%), Positives = 251/509 (49%), Gaps = 26/509 (5%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D ++++ L+  Y K+G+I+ A  +F +I   +VVSW+ +I G  ++  ++ ++     M
Sbjct: 216 LDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEM 275

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFE--GLKNPY------ 114
             SG  PN FT+   L A A +   EL R +H  ++K    SDLF   GL + Y      
Sbjct: 276 KGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMM 335

Query: 115 --------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                         +++ NA+++G+        AV LF+      +  N  T+ TV++  
Sbjct: 336 DDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSV 395

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
            +L +  +C+ IH ++IK G+  D  V NS+LD Y     +D A +IF E   +D++++T
Sbjct: 396 ASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYT 455

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+  +  +    +ALK++ +M+ + I  D     +L++  A L   ++GKQLH   +  
Sbjct: 456 SMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKF 515

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           G   ++  SNS++ MY+KCG ++ +   F++I  + +VSW+A+I GY Q+G  +EAL  F
Sbjct: 516 GFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEALRLF 575

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQ-LHGIAFEAGFPRYRSVQNCLISSYS 399
            +M ++     + ITLVS+L A      +    Q    +    G    +    C+I    
Sbjct: 576 NQMLRDGVPP-NHITLVSVLCACNHAGLVNEGKQYFEKMEVMFGIKPTQEHYACMIDLLG 634

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           + G ++ A  +   + F  D   W  ++    ++ + E       KM    E   S T++
Sbjct: 635 RSGKLNEAVELVNSIPFEADGFVWGALLGAARIHKNIELGQKAA-KMLFDLEPEKSGTHV 693

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVK 488
            + N    AG+  + +    + ++++KVK
Sbjct: 694 LLANIYASAGMW-ENVAKVRKFMKDSKVK 721



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 105/366 (28%), Positives = 183/366 (50%), Gaps = 14/366 (3%)

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           +H   IK G   D S+ N ++ +YS       A ++  E    DV+SW+ ++  +V   +
Sbjct: 3   LHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNGF 62

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
             +AL +F EM    + C+     +++   ++  DL  G+++H   V+ G +S+  ++N+
Sbjct: 63  VEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANT 122

Query: 292 IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
           ++ MY+KCG LD SR +F  I E+++VSW A+ S YVQ+    EA+  F +M +      
Sbjct: 123 LVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGI-MP 181

Query: 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVF 411
           +  ++  IL A   L   ++  ++HG+  + G    +   N L+  YSK G ++ A  VF
Sbjct: 182 NEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVF 241

Query: 412 EEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLT 471
           +++    DVVSWN II G  ++   + AL L  +M  +G  P+  T  S L AC   G  
Sbjct: 242 QDIAH-PDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFK 300

Query: 472 NDGLVIFNQMIEENKVKPSQEHYGCV--VDLLARAGCLSDASGLAGKLLEGMGPN---IW 526
             G  + + +I   K+    + +  V  VD+ ++   + DA     +  + M       W
Sbjct: 301 ELGRQLHSSLI---KMDAHSDLFAAVGLVDMYSKCEMMDDAR----RAYDSMPKKDIIAW 353

Query: 527 RALLSG 532
            AL+SG
Sbjct: 354 NALISG 359



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 135/267 (50%), Gaps = 8/267 (2%)

Query: 272 QLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNG 331
           +LHA ++  G   +  L N ++ +YSKC     +R + ++ +E  +VSW++++SGYVQNG
Sbjct: 2   ELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNG 61

Query: 332 CAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ 391
              EAL  F +M        +  T  S+L A      L +  ++HG+A   GF     V 
Sbjct: 62  FVEEALLVFNEMCLLGV-KCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVA 120

Query: 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE 451
           N L+  Y+KCG +D +  +F  +   R+VVSWN +   Y  +     A+ L+ +M  +G 
Sbjct: 121 NTLVVMYAKCGLLDDSRRLFGGI-VERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGI 179

Query: 452 VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDAS 511
           +P+  +   ILNAC      + G  I   M++   +   Q     +VD+ ++AG   +  
Sbjct: 180 MPNEFSISIILNACAGLQEGDLGRKIHGLMLKMG-LDLDQFSANALVDMYSKAG---EIE 235

Query: 512 GLAGKLLEGMGPNI--WRALLSGCVLH 536
           G      +   P++  W A+++GCVLH
Sbjct: 236 GAVAVFQDIAHPDVVSWNAIIAGCVLH 262



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 61/189 (32%), Positives = 91/189 (48%), Gaps = 23/189 (12%)

Query: 373 LQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGV 432
           ++LH    + GF R  S++N L++ YSKC     A  + +E   L DVVSW++++ GY  
Sbjct: 1   MELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSEL-DVVSWSSLLSGYVQ 59

Query: 433 NGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQE 492
           NG  E AL ++++M   G   +  T+ S+L AC      N G     + +    V    E
Sbjct: 60  NGFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMG-----RKVHGMAVVTGFE 114

Query: 493 HYGCVVDLL----ARAGCLSDASGLAGKLLEGMGPNI--WRALLSG------CVLHVGRF 540
             G V + L    A+ G L D+  L G ++E    N+  W AL S       C   VG F
Sbjct: 115 SDGFVANTLVVMYAKCGLLDDSRRLFGGIVE---RNVVSWNALFSCYVQSELCGEAVGLF 171

Query: 541 QDAEALRSG 549
           +  E +RSG
Sbjct: 172 K--EMVRSG 178


>gi|359483391|ref|XP_003632946.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Vitis vinifera]
          Length = 732

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 172/552 (31%), Positives = 297/552 (53%), Gaps = 27/552 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y ++ L++ Y K G  + A  +FD + ++NVV W+ +I  Y+  G H+ +   ++ M 
Sbjct: 82  DSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMR 141

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
             G+ P+S TM+G+L   +G+  L   + +H  ++++G  SD                  
Sbjct: 142 RQGIQPSSVTMLGLL---SGVLELVHLQCLHACVIQYGFGSDVALANSMLNVYCKCGRVE 198

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               LFE +    ++S N++V+G+      ++ + L    +  G+ P+  T  +++    
Sbjct: 199 DAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSAAA 258

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
                 + +++HG  ++ GL  D  +  S++ MY    ++++A +IF  M  KDVISWT 
Sbjct: 259 MQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTA 318

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+   V  + A  A+ +FR M KSR++  T  + ++++  A LG    G  +H  ++   
Sbjct: 319 MISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVHGYILRQR 378

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           ++ ++   NS++ MY+KCG L+ S SVF++++ + +VSW AI+SG+ QNG   +AL  F 
Sbjct: 379 IKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFN 438

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +MR+ +    DSIT+VS+L A   + AL     +H    ++       +   L+  YSKC
Sbjct: 439 EMRKARQRP-DSITVVSLLQACASIGALHQGKWIHNFVTKSCLGPCILIDTALVDMYSKC 497

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G++  A   F+ M   +D+VSW++II GYG +G GETAL +Y     TG  P+   YLSI
Sbjct: 498 GDLGSAQKCFDRMP-QQDLVSWSSIIAGYGSHGKGETALRMYSDFLHTGIQPNHVIYLSI 556

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L+AC H GL + GL  F+ M ++  ++P  EH  C+VDLL+RAG + +A     ++    
Sbjct: 557 LSACSHNGLVDQGLSFFHSMTKDFGIEPRLEHRACIVDLLSRAGRVEEAYSFYKRMFPKP 616

Query: 522 GPNIWRALLSGC 533
             ++   LL  C
Sbjct: 617 SMDVLGILLDAC 628



 Score =  208 bits (529), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 153/578 (26%), Positives = 274/578 (47%), Gaps = 54/578 (9%)

Query: 38  SWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLM 97
           S++ +I+  S  G     +  +S M+ +   P++ T   ++ A   L       S H  +
Sbjct: 15  SYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQRV 74

Query: 98  VKFGLESD----------------------LFEGLKNPYLVSCNAIVAGFINNKLFQQAV 135
           +  G  SD                      +F+ + +  +V    ++  +        A 
Sbjct: 75  IVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAF 134

Query: 136 LLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMY 195
            ++N  R  G+ P++VTML ++ G + L      + +H   I+ G   DV++ NS+L++Y
Sbjct: 135 SMYNIMRRQGIQPSSVTMLGLLSGVLEL---VHLQCLHACVIQYGFGSDVALANSMLNVY 191

Query: 196 SCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALL 255
                ++ A  +F  M+ +DVISW  ++  +       + L++   M+   I  D     
Sbjct: 192 CKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFG 251

Query: 256 NLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK 315
           +L+S  A+   L  GK +H  ++  GL+ +  +  S+I MY KCG+++S+  +F  +  K
Sbjct: 252 SLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHK 311

Query: 316 SLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQL 375
            ++SWTA+ISG VQN CA  A+  F +M + +     + T+ S+L A  EL +  +   +
Sbjct: 312 DVISWTAMISGLVQNDCADMAVTVFRRMLKSRV-MPSTATIASVLAACAELGSFPLGTSV 370

Query: 376 HGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGH 435
           HG             QN L++ Y+KCG+++ +  VF+ M   RD+VSWN I+ G+  NGH
Sbjct: 371 HGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMS-RRDIVSWNAIVSGHAQNGH 429

Query: 436 GETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYG 495
              AL L+++M +  + PDS T +S+L AC   G  + G  I N  + ++ + P      
Sbjct: 430 LCKALLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKWIHN-FVTKSCLGPCILIDT 488

Query: 496 CVVDLLARAGCLSDASGLAGKLLEGMGPN---IWRALLSGCVLHVGRFQDA-----EALR 547
            +VD+ ++ G L    G A K  + M       W ++++G   H G+ + A     + L 
Sbjct: 489 ALVDMYSKCGDL----GSAQKCFDRMPQQDLVSWSSIIAGYGSH-GKGETALRMYSDFLH 543

Query: 548 SGSQKKGIIKIP-------------GISFLNSTSRDFG 572
           +G Q   +I +              G+SF +S ++DFG
Sbjct: 544 TGIQPNHVIYLSILSACSHNGLVDQGLSFFHSMTKDFG 581



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 117/426 (27%), Positives = 215/426 (50%), Gaps = 17/426 (3%)

Query: 112 NPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCEL 171
           NP   S NAI+        F   +L ++    +   P+A T  ++++ C +L   +    
Sbjct: 10  NPATKSYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLS 69

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
            H   I  G   D  +  S+++ YS      +A ++F  M+ ++V+ WT M+G +     
Sbjct: 70  FHQRVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGE 129

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
              A  ++  MR+  I   +V +L L+S   +L +L   + LHA V+  G  S++ L+NS
Sbjct: 130 HDVAFSMYNIMRRQGIQPSSVTMLGLLS--GVL-ELVHLQCLHACVIQYGFGSDVALANS 186

Query: 292 IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
           ++ +Y KCG ++ ++++F  +  + ++SW +++SGY Q G  RE L   I+M   KTD +
Sbjct: 187 MLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRM---KTDGI 243

Query: 352 --DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYI 409
             D  T  S+++A+   + L +   +HG    AG  +   ++  LI  Y KCGNV+ A+ 
Sbjct: 244 EPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFR 303

Query: 410 VFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAG 469
           +FE M   +DV+SW  +I G   N   + A+ ++ +M ++  +P ++T  S+L AC   G
Sbjct: 304 IFEGM-MHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELG 362

Query: 470 LTNDGLVIFNQMIEENKVK---PSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIW 526
               G  +   ++ + ++K   PSQ     +V + A+ G L  +  +  + +       W
Sbjct: 363 SFPLGTSVHGYILRQ-RIKLDIPSQN---SLVTMYAKCGHLEQSCSVFDR-MSRRDIVSW 417

Query: 527 RALLSG 532
            A++SG
Sbjct: 418 NAIVSG 423



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 55/250 (22%), Positives = 119/250 (47%), Gaps = 28/250 (11%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D  + + L++ Y K G ++++ ++FD +  +++VSW+ ++ G++ NG   K++  F+ M
Sbjct: 381 LDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEM 440

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK----------------------F 100
             +   P+S T+V +L A A +  L   + IH  + K                       
Sbjct: 441 RKARQRPDSITVVSLLQACASIGALHQGKWIHNFVTKSCLGPCILIDTALVDMYSKCGDL 500

Query: 101 GLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
           G     F+ +    LVS ++I+AG+ ++   + A+ +++ F  +G+ PN V  L+++  C
Sbjct: 501 GSAQKCFDRMPQQDLVSWSSIIAGYGSHGKGETALRMYSDFLHTGIQPNHVIYLSILSAC 560

Query: 161 VALG--SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
              G   + L    H +T   G+   +     ++D+ S    ++ A   ++ M  K  + 
Sbjct: 561 SHNGLVDQGL-SFFHSMTKDFGIEPRLEHRACIVDLLSRAGRVEEAYSFYKRMFPKPSMD 619

Query: 219 WTRMMGLFVD 228
              ++G+ +D
Sbjct: 620 ---VLGILLD 626


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 180/564 (31%), Positives = 290/564 (51%), Gaps = 36/564 (6%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYS-INGFHEKSMKAF 59
           P  +  +++ ++S Y KSG + EA  LFD + E+  V+W+I+I GYS +N F E + + F
Sbjct: 79  PHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKE-AFELF 137

Query: 60  SHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES--------------- 104
             M   G  P+  T V +L    G +       +   ++K G +S               
Sbjct: 138 VQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKS 197

Query: 105 -------DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
                   LF+ +     VS NA++ G+  + L ++AV LF   + SGL P   T   V+
Sbjct: 198 NRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVL 257

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
              + L    L + IH   IK   + +V V+N++LD YS    +  A ++F EM  +D +
Sbjct: 258 CANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGV 317

Query: 218 SWTRMMGLFVDFEYAGD-----ALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQ 272
           S+  ++       YA D     A  +FRE++ +           ++S+ +   D + G+Q
Sbjct: 318 SYNVIIS-----GYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQ 372

Query: 273 LHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC 332
           +HAQ ++    SE+ + NS++ MY+KCG  + +  +F  +T +S V WTA+IS YVQ G 
Sbjct: 373 IHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGF 432

Query: 333 AREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN 392
             E L  F KMRQ    + D  T  S+L AS  +A+L +  QLH    ++GF       +
Sbjct: 433 YEEGLQLFNKMRQASVIA-DQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGS 491

Query: 393 CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV 452
            L+  Y+KCG++  A   F+EM   R++VSWN +I  Y  NG  E  L  + +M  +G  
Sbjct: 492 ALLDVYAKCGSIKDAVQTFQEMP-DRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQ 550

Query: 453 PDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASG 512
           PDS ++L +L+AC H+GL  +GL  FN M +  K+ P +EHY  VVD+L R+G  ++A  
Sbjct: 551 PDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEK 610

Query: 513 LAGKLLEGMGPNIWRALLSGCVLH 536
           L  ++       +W ++L+ C +H
Sbjct: 611 LMAEMPIDPDEIMWSSVLNACRIH 634



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 129/491 (26%), Positives = 230/491 (46%), Gaps = 42/491 (8%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+ +Y KS ++  A  LF E+PE + VS++ +I GYS +G  EK++  F  M  SGL P 
Sbjct: 190 LVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPT 249

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVK---------------FGLESD-------LFE 108
            FT   VL A  GL ++ L + IH  ++K               F  + D       LF+
Sbjct: 250 EFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFD 309

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            +     VS N I++G+  +   + A  LF   + +          T++          +
Sbjct: 310 EMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEM 369

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
              IH  TI      ++ V NS++DMY+     + A  IF  +  +  + WT M+  +V 
Sbjct: 370 GRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQ 429

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
             +  + L++F +MR++ +I D     +L+  +A +  L  GKQLH+ ++  G  S +  
Sbjct: 430 KGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFS 489

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
            ++++ +Y+KCG +  +   F ++ ++++VSW A+IS Y QNG A   L  F +M     
Sbjct: 490 GSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGL 549

Query: 349 DSVDSITLVSILTASGELAALEICL-------QLHGIAFEAGFPR---YRSVQNCLISSY 398
              DS++ + +L+A      +E  L       Q++ +      PR   Y SV + L  S 
Sbjct: 550 QP-DSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLD-----PRREHYASVVDMLCRS- 602

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
              G  + A  +  EM    D + W++++    ++ + E A     ++    E+ D++ Y
Sbjct: 603 ---GRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDAAPY 659

Query: 459 LSILNACGHAG 469
           +++ N    AG
Sbjct: 660 VNMSNIYAAAG 670



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 98/392 (25%), Positives = 174/392 (44%), Gaps = 33/392 (8%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINN-------KL------------------------FQQA 134
           LFE + +   VS N +++G++ +       KL                        F++A
Sbjct: 74  LFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEA 133

Query: 135 VLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDM 194
             LF   +  G  P+ VT +T++ GC           +    IKLG    + V N+++D 
Sbjct: 134 FELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDS 193

Query: 195 YSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVAL 254
           Y     LD A Q+F+EM   D +S+  M+  +        A+ +F EM+ S +       
Sbjct: 194 YCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTF 253

Query: 255 LNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE 314
             ++  N  L D+  G+Q+H+ V+       + +SN+++  YSK   +  +R +F+++ E
Sbjct: 254 AAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPE 313

Query: 315 KSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQ 374
           +  VS+  IISGY  +G  + A + F +++    D        ++L+ +      E+  Q
Sbjct: 314 QDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDR-KQFPFATMLSIASNTLDWEMGRQ 372

Query: 375 LHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNG 434
           +H             V N L+  Y+KCG  + A ++F  +   R  V W  +I  Y   G
Sbjct: 373 IHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTH-RSAVPWTAMISAYVQKG 431

Query: 435 HGETALALYHKMTETGEVPDSSTYLSILNACG 466
             E  L L++KM +   + D +T+ S+L A  
Sbjct: 432 FYEEGLQLFNKMRQASVIADQATFASLLRASA 463



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 113/240 (47%), Gaps = 37/240 (15%)

Query: 273 LHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC 332
           + A++V  G   +   SN  +  + K G+L  +R +F ++  K+ VS   +ISGYV++G 
Sbjct: 39  IDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGN 98

Query: 333 AREA------------------------LNQ-------FIKMRQEKTDSVDSITLVSILT 361
             EA                        LNQ       F++M++  T+  D +T V++L+
Sbjct: 99  LGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEP-DYVTFVTLLS 157

Query: 362 ASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVV 421
                       Q+     + G+     V N L+ SY K   +DLA  +F+EM  + D V
Sbjct: 158 GCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEI-DSV 216

Query: 422 SWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQM 481
           S+N +I GY  +G  E A+ L+ +M  +G  P   T+ ++L  C + GL  D +V+  Q+
Sbjct: 217 SYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVL--CANIGL--DDIVLGQQI 272


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 189/617 (30%), Positives = 309/617 (50%), Gaps = 63/617 (10%)

Query: 10  KLLSNYFKSGKIKEAENLFDEIPE--KNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           KL+  Y    ++K A ++FD++P   KNVV W+++I  Y+ NG +E+++  +  M+  G+
Sbjct: 56  KLVDLYIACSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGI 115

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES----------------------D 105
            PN FT   VL A + L+     R IH  + +  LES                      +
Sbjct: 116 TPNRFTFPFVLKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKE 175

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F+ +    +V+ N++++GF  ++     V        + + PN+ T++ V+     + S
Sbjct: 176 VFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQMQNDVSPNSSTIVGVLPAVAQVNS 235

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME-CKDVISWTRMMG 224
               + IHG  ++ G + DV V   +LD+Y     +D A +IF  M   K+ ++W+ M+G
Sbjct: 236 LRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVG 295

Query: 225 LFVDFEYAGDALKIFREM---RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
            +V  ++  +AL++F ++   +   I+   V L  +I V A L DL  G  LH   +  G
Sbjct: 296 AYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSG 355

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
              +L + N++++MY+KCG ++ +   FN++  +  VS+TAIISGYVQNG + E L  F+
Sbjct: 356 FVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFL 415

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +M+    +  +  TL S+L A   LA L      H  A   GF     + N LI  Y+KC
Sbjct: 416 EMQLSGINP-EKATLASVLPACAHLAGLHYGSCSHCYAIICGFTADTMICNALIDMYAKC 474

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G +D A  VF+ M   R +VSWNT+I  YG++G G  AL L+  M   G  PD  T++ +
Sbjct: 475 GKIDTARKVFDRM-HKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEGLKPDDVTFICL 533

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           ++AC H+GL  +G   FN M ++  + P  EHY C+VDLL+RAG   +      K+    
Sbjct: 534 ISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYACMVDLLSRAGLFKEVHSFIEKMPLEP 593

Query: 522 GPNIWRALLSGCVLH---------------------------------VGRFQDAEALRS 548
              +W ALLS C ++                                 VGR+ DA  +R 
Sbjct: 594 DVRVWGALLSACRVYKNVELGEGVSKKIQKLGPESTGNFVLLSNMYSAVGRWDDAAQVRF 653

Query: 549 GSQKKGIIKIPGISFLN 565
             +++G  K PG S++ 
Sbjct: 654 TQKEQGFEKSPGCSWIE 670



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 137/485 (28%), Positives = 242/485 (49%), Gaps = 44/485 (9%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM--- 62
           Y S+ L+  Y K G + +A+ +FD++ +++VV+W+ +I G+S+   HE S    + +   
Sbjct: 155 YVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISGFSL---HEGSYDEVARLLVQ 211

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG------------- 109
           M + + PNS T+VGVL A A + +L   + IHG  V+ G   D+  G             
Sbjct: 212 MQNDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCI 271

Query: 110 ------------LKNPYLVSCNAIVAGFINNKLFQQAVLLFN---FFRGSGLVPNAVTML 154
                       +KN   V+ +A+V  ++     ++A+ LF      +   +V +AVT+ 
Sbjct: 272 DYARRIFDMMGIVKNE--VTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLA 329

Query: 155 TVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
           TVIR C  L   +    +H   IK G +LD+ V N++L MY+    ++ A++ F EM+ +
Sbjct: 330 TVIRVCANLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLR 389

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
           D +S+T ++  +V    + + L++F EM+ S I  +   L +++   A L  L  G   H
Sbjct: 390 DAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSH 449

Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
              ++ G  ++  + N++I MY+KCG +D++R VF+++ ++ +VSW  +I  Y  +G   
Sbjct: 450 CYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGL 509

Query: 335 EALNQFIKMRQE--KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG-FPRYRSVQ 391
           EAL  F  M+ E  K D V  I L+S  + SG +A  E     + +  + G  PR     
Sbjct: 510 EALLLFDNMQSEGLKPDDVTFICLISACSHSGLVA--EGKYWFNAMTQDFGIIPRMEHYA 567

Query: 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE 451
            C++   S+ G     +   E+M    DV  W  ++    V  + E    +  K+ + G 
Sbjct: 568 -CMVDLLSRAGLFKEVHSFIEKMPLEPDVRVWGALLSACRVYKNVELGEGVSKKIQKLG- 625

Query: 452 VPDSS 456
            P+S+
Sbjct: 626 -PEST 629


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 187/619 (30%), Positives = 310/619 (50%), Gaps = 57/619 (9%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C + +  + L++ Y   G  K AE +F ++   + V+++ +I G++  G  E +++ F  
Sbjct: 176 CSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDE 235

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-LFEGLKNPYLVSCNA 120
           M LSGL P+  T+  +L A A + +L+  + +H  ++K G+  D + EG      V C  
Sbjct: 236 MQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGD 295

Query: 121 I-VAGFINNKLFQQAVLLFNFF--------------------RGSGLVPNAVTMLTVIRG 159
           I  A  I N   +  V+L+N                      + +G+ PN  T   ++R 
Sbjct: 296 IETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRT 355

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C   G   L E IH L+IK G   D+ V+  ++DMYS    LD A +I   +E +DV+SW
Sbjct: 356 CTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSW 415

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           T M+  +V  ++  +AL  F+EM+   +  D + L +  S  A +  +++G Q+HA+V +
Sbjct: 416 TSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYV 475

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G  +++ + N+++ +Y++CG  + + S+F +I  K  ++W  +ISG+ Q+    +AL  
Sbjct: 476 SGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMV 535

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           F+KM Q      +  T +S ++A   LA ++   Q+HG A + G      V N LIS Y 
Sbjct: 536 FMKMSQAGA-KYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYG 594

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           KCG+++ A ++F EM  LR+ VSWNTII     +G G  AL L+ +M + G  P+  T++
Sbjct: 595 KCGSIEDAKMIFSEMS-LRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFI 653

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519
            +L AC H GL  +GL  F  M     + P  +HY CVVD+L RAG L  A     ++  
Sbjct: 654 GVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPI 713

Query: 520 GMGPNIWRALLSGCVLH---------------------------------VGRFQDAEAL 546
                IWR LLS C +H                                  G++ + + +
Sbjct: 714 TANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQV 773

Query: 547 RSGSQKKGIIKIPGISFLN 565
           R   + +GI K PG S++ 
Sbjct: 774 RKMMKDRGIRKEPGRSWIE 792



 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 141/576 (24%), Positives = 281/576 (48%), Gaps = 28/576 (4%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+  Y K+G + +A  +F E+  ++ VSW  ++ GY+  G  +++ + +S M  + ++P 
Sbjct: 84  LIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVIPT 143

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPYL------------- 115
            + +  VL A    +     R IH  + K    S+ F G  L   YL             
Sbjct: 144 PYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFC 203

Query: 116 -------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
                  V+ N +++G       + A+ +F+  + SGL P+ VT+ +++  C ++G    
Sbjct: 204 DMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQK 263

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
            + +H   +K G+  D     S+LD+Y    D++ A  IF   +  +V+ W  M+  +  
Sbjct: 264 GKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQ 323

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
                 + +IF +M+ + I  +      ++      G ++ G+Q+H+  +  G +S++ +
Sbjct: 324 ISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYV 383

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
           S  +I MYSK   LD +R +   + ++ +VSWT++I+GYVQ+    EAL  F +M Q+  
Sbjct: 384 SGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEM-QDCG 442

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
              D+I L S  +A   + A+   LQ+H   + +G+    S+ N L++ Y++CG  + A+
Sbjct: 443 VWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAF 502

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
            +F E+   +D ++WN +I G+G +   E AL ++ KM++ G   +  T++S ++A  + 
Sbjct: 503 SLFREIDH-KDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISALANL 561

Query: 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRA 528
                G  +  + ++      + E    ++ L  + G + DA  +  + +       W  
Sbjct: 562 ADIKQGKQVHGRAVKTGHTSET-EVANALISLYGKCGSIEDAKMIFSE-MSLRNEVSWNT 619

Query: 529 LLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFL 564
           +++ C  H GR  +A  L    +++G +K   ++F+
Sbjct: 620 IITSCSQH-GRGLEALDLFDQMKQEG-LKPNDVTFI 653


>gi|125555495|gb|EAZ01101.1| hypothetical protein OsI_23130 [Oryza sativa Indica Group]
          Length = 766

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 178/552 (32%), Positives = 291/552 (52%), Gaps = 30/552 (5%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L++ Y +      A  +FDE+P +N VSW+ VI  +  NG    ++  FS M+ SG   +
Sbjct: 92  LITMYGRCAAPDSARQVFDEMPARNPVSWASVIAAHVQNGRAGDALGLFSSMLRSGTAAD 151

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------------FE 108
            F +   + A   L ++   R +H   +K    SDL                      FE
Sbjct: 152 QFALGSAVRACTELGDVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFE 211

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFN--FFRGSGLVPNAVTMLTVIRGCVALGSR 166
            +K+  L+S  +I+AGF       +A+ +F      GS   PN     +  R C A+GS 
Sbjct: 212 RIKDKDLISWGSIIAGFAQQGFEMEALQVFRKMIVEGSHH-PNEFHFGSAFRACGAVGSW 270

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
              E IHGL+IK  L  D+ V  S+ DMY+   +LD+A   F  +E  D++SW  ++  +
Sbjct: 271 EYGEQIHGLSIKYRLDRDLYVGCSLSDMYARFKNLDSARVAFYRIEAPDLVSWNSIVNAY 330

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
                  +AL +F EMR S +  D + +  L+        L  G+ +H+ +V  GL  ++
Sbjct: 331 SVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKLGLDGDV 390

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            + NS+++MY++C DL S+  VF++I ++ +V+W +I++   Q+    E L  F  + + 
Sbjct: 391 SVCNSLLSMYARCSDLSSAMDVFHEIKDQDVVTWNSILTACAQHNHPEEVLKLFSLLNKS 450

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
           +  S+D I+L ++L+AS EL   E+  Q+H  AF+AG    R + N LI +Y+KCG++D 
Sbjct: 451 EP-SLDRISLNNVLSASAELGYFEMVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCGSLDD 509

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           A  +FE MG  RDV SW+++I GY   G+ + AL L+ +M   G  P+  T++ +L AC 
Sbjct: 510 AMRLFEIMGNNRDVFSWSSLIVGYAQFGYAKEALDLFSRMRSLGIRPNHVTFIGVLTACS 569

Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI- 525
             G  N+G   ++ M  E  + P++EH  C+VDLLARAG L++A+    ++     P+I 
Sbjct: 570 RVGFVNEGCYYYSIMEPEYGIVPTREHCSCIVDLLARAGKLTEAANFIDQM--PFEPDII 627

Query: 526 -WRALLSGCVLH 536
            W+ LL+   +H
Sbjct: 628 MWKTLLAASKMH 639



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 92/279 (32%), Positives = 144/279 (51%), Gaps = 1/279 (0%)

Query: 187 VNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSR 246
           + N ++ MY      D+A Q+F EM  ++ +SW  ++   V    AGDAL +F  M +S 
Sbjct: 88  LGNHLITMYGRCAAPDSARQVFDEMPARNPVSWASVIAAHVQNGRAGDALGLFSSMLRSG 147

Query: 247 IICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSR 306
              D  AL + +     LGD+  G+Q+HA  +     S+L + N+++ MYSK G +D   
Sbjct: 148 TAADQFALGSAVRACTELGDVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGF 207

Query: 307 SVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGEL 366
            +F +I +K L+SW +II+G+ Q G   EAL  F KM  E +   +     S   A G +
Sbjct: 208 MLFERIKDKDLISWGSIIAGFAQQGFEMEALQVFRKMIVEGSHHPNEFHFGSAFRACGAV 267

Query: 367 AALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTI 426
            + E   Q+HG++ +    R   V   L   Y++  N+D A + F  +    D+VSWN+I
Sbjct: 268 GSWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARFKNLDSARVAFYRIE-APDLVSWNSI 326

Query: 427 IYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
           +  Y V G    AL L+ +M ++G  PD  T   +L AC
Sbjct: 327 VNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCAC 365



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 93/411 (22%), Positives = 185/411 (45%), Gaps = 33/411 (8%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y    L   Y +   +  A   F  I   ++VSW+ +++ YS+ G   +++  FS M 
Sbjct: 288 DLYVGCSLSDMYARFKNLDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMR 347

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES------------------- 104
            SGL P+  T+ G+L A  G   L   R IH  +VK GL+                    
Sbjct: 348 DSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLS 407

Query: 105 ---DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
              D+F  +K+  +V+ N+I+     +   ++ + LF+    S    + +++  V+    
Sbjct: 408 SAMDVFHEIKDQDVVTWNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASA 467

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM-ECKDVISWT 220
            LG   + + +H    K GL+ D  ++N+++D Y+    LD A+++F  M   +DV SW+
Sbjct: 468 ELGYFEMVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWS 527

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++  +  F YA +AL +F  MR   I  + V  + +++  + +G +  G   ++ +   
Sbjct: 528 SLIVGYAQFGYAKEALDLFSRMRSLGIRPNHVTFIGVLTACSRVGFVNEGCYYYSIMEPE 587

Query: 281 -GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISGYVQNG---CARE 335
            G+       + I+ + ++ G L  + +  +Q+  E  ++ W  +++    +      + 
Sbjct: 588 YGIVPTREHCSCIVDLLARAGKLTEAANFIDQMPFEPDIIMWKTLLAASKMHNDMEMGKR 647

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASG---ELAALEICLQLHGIAFEAG 383
           A    + +  + + S   + L +I  ASG   E A L+  ++  G+    G
Sbjct: 648 AAEGILNI--DPSHSAAYVLLCNIYAASGNWNEFARLKKAMRTSGVKKSPG 696


>gi|15228590|ref|NP_187008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207453|sp|Q9SS60.1|PP210_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g03580
 gi|6091764|gb|AAF03474.1|AC009327_13 hypothetical protein [Arabidopsis thaliana]
 gi|28393735|gb|AAO42278.1| unknown protein [Arabidopsis thaliana]
 gi|29824355|gb|AAP04138.1| unknown protein [Arabidopsis thaliana]
 gi|332640438|gb|AEE73959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 882

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 181/591 (30%), Positives = 311/591 (52%), Gaps = 35/591 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L+  Y + G +  A  +FDE+P +++VSW+ +I GYS +G++E++++ +  + 
Sbjct: 140 DLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELK 199

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHG-------------------LMVKFGLES 104
            S ++P+SFT+  VL A   L  ++  + +HG                   + +KF   +
Sbjct: 200 NSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPT 259

Query: 105 D---LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
           D   +F+ +     VS N ++ G++  ++ +++V +F         P+ +T+ +V+R C 
Sbjct: 260 DARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMF-LENLDQFKPDLLTVSSVLRACG 318

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            L   +L + I+   +K G +L+ +V N ++D+Y+   D+  A  +F  MECKD +SW  
Sbjct: 319 HLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNS 378

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++  ++      +A+K+F+ M       D +  L LISV+  L DLK GK LH+  +  G
Sbjct: 379 IISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSG 438

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           +  +L +SN++I MY+KCG++  S  +F+ +     V+W  +IS  V+ G     L    
Sbjct: 439 ICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTT 498

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +MR+ +    D  T +  L     LAA  +  ++H      G+     + N LI  YSKC
Sbjct: 499 QMRKSEV-VPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKC 557

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G ++ +  VFE M   RDVV+W  +IY YG+ G GE AL  +  M ++G VPDS  +++I
Sbjct: 558 GCLENSSRVFERMS-RRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAI 616

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           + AC H+GL ++GL  F +M    K+ P  EHY CVVDLL+R+  +S A      +    
Sbjct: 617 IYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKP 676

Query: 522 GPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIKI----PGISFLNSTS 568
             +IW ++L  C    G  + AE +      + II++    PG S L S +
Sbjct: 677 DASIWASVLRACRTS-GDMETAERV-----SRRIIELNPDDPGYSILASNA 721



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 145/530 (27%), Positives = 267/530 (50%), Gaps = 33/530 (6%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEI-PEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSG 66
           S KL+  Y    +   + ++F  + P KNV  W+ +I  +S NG   ++++ +  +  S 
Sbjct: 42  SGKLIDKYSHFREPASSLSVFRRVSPAKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESK 101

Query: 67  LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPY---------- 114
           + P+ +T   V+ A AGL + E+   ++  ++  G ESDLF G  L + Y          
Sbjct: 102 VSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFESDLFVGNALVDMYSRMGLLTRAR 161

Query: 115 ----------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
                     LVS N++++G+ ++  +++A+ +++  + S +VP++ T+ +V+     L 
Sbjct: 162 QVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLL 221

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
                + +HG  +K G+   V VNN ++ MY        A ++F EM+ +D +S+  M+ 
Sbjct: 222 VVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMIC 281

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            ++  E   +++++F E    +   D + + +++     L DL   K ++  ++  G   
Sbjct: 282 GYLKLEMVEESVRMFLE-NLDQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVL 340

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           E  + N +I +Y+KCGD+ ++R VFN +  K  VSW +IISGY+Q+G   EA+  F KM 
Sbjct: 341 ESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLF-KMM 399

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
               +  D IT + +++ S  LA L+    LH    ++G     SV N LI  Y+KCG V
Sbjct: 400 MIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEV 459

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
             +  +F  MG   D V+WNT+I      G   T L +  +M ++  VPD +T+L  L  
Sbjct: 460 GDSLKIFSSMG-TGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPM 518

Query: 465 CGHAGLTNDGLVIFNQMIE---ENKVKPSQEHYGCVVDLLARAGCLSDAS 511
           C        G  I   ++    E++++        ++++ ++ GCL ++S
Sbjct: 519 CASLAAKRLGKEIHCCLLRFGYESELQIGN----ALIEMYSKCGCLENSS 564



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 144/515 (27%), Positives = 251/515 (48%), Gaps = 49/515 (9%)

Query: 80  AAAGLQNLELARSIHGLMVKFGLES-DLFEG------------------------LKNPY 114
           A +   NL   R IH L++  GL+S D F G                         KN Y
Sbjct: 13  ALSSSSNLNELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAKNVY 72

Query: 115 LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHG 174
           L   N+I+  F  N LF +A+  +   R S + P+  T  +VI+ C  L    + +L++ 
Sbjct: 73  L--WNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYE 130

Query: 175 LTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGD 234
             + +G   D+ V N+++DMYS +  L  A Q+F EM  +D++SW  ++  +    Y  +
Sbjct: 131 QILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEE 190

Query: 235 ALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIA 294
           AL+I+ E++ S I+ D+  + +++     L  +K+G+ LH   +  G+ S + ++N ++A
Sbjct: 191 ALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVA 250

Query: 295 MYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK-MRQEKTDSVDS 353
           MY K      +R VF+++  +  VS+  +I GY++     E++  F++ + Q K    D 
Sbjct: 251 MYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENLDQFKP---DL 307

Query: 354 ITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEE 413
           +T+ S+L A G L  L +   ++    +AGF    +V+N LI  Y+KCG++  A  VF  
Sbjct: 308 LTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNS 367

Query: 414 MGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTND 473
           M   +D VSWN+II GY  +G    A+ L+  M    E  D  TYL +++       T  
Sbjct: 368 ME-CKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVS-----TRL 421

Query: 474 GLVIFNQMIEENKVKP----SQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI-WRA 528
             + F + +  N +K            ++D+ A+ G + D+  +   +  G G  + W  
Sbjct: 422 ADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSM--GTGDTVTWNT 479

Query: 529 LLSGCVLHVGRFQD-AEALRSGSQKKGIIKIPGIS 562
           ++S CV    RF D A  L+  +Q +    +P ++
Sbjct: 480 VISACV----RFGDFATGLQVTTQMRKSEVVPDMA 510



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 134/489 (27%), Positives = 237/489 (48%), Gaps = 40/489 (8%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L++ Y K  +  +A  +FDE+  ++ VS++ +I GY      E+S++ F    L    P+
Sbjct: 248 LVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLEN-LDQFKPD 306

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFG--LES--------------------DLFE 108
             T+  VL A   L++L LA+ I+  M+K G  LES                    D+F 
Sbjct: 307 LLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFN 366

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            ++    VS N+I++G+I +    +A+ LF          + +T L +I     L     
Sbjct: 367 SMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKF 426

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
            + +H   IK G+ +D+SV+N+++DMY+   ++  +++IF  M   D ++W  ++   V 
Sbjct: 427 GKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVR 486

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
           F      L++  +MRKS ++ D    L  + + A L   + GK++H  ++  G +SEL++
Sbjct: 487 FGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQI 546

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
            N++I MYSKCG L++S  VF +++ + +V+WT +I  Y   G   +AL  F  M  EK+
Sbjct: 547 GNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADM--EKS 604

Query: 349 DSV-DSITLVSILTASGELAALEICLQLHGIA-FEAGFPRYR-----SVQNCLISSYSKC 401
             V DS+  ++I+ A      ++      G+A FE     Y+         C++   S+ 
Sbjct: 605 GIVPDSVVFIAIIYACSHSGLVD-----EGLACFEKMKTHYKIDPMIEHYACVVDLLSRS 659

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
             +  A    + M    D   W +++     +G  ETA  +  ++ E    PD   Y SI
Sbjct: 660 QKISKAEEFIQAMPIKPDASIWASVLRACRTSGDMETAERVSRRIIELN--PDDPGY-SI 716

Query: 462 LNACGHAGL 470
           L +  +A L
Sbjct: 717 LASNAYAAL 725



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 78/181 (43%), Gaps = 22/181 (12%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           CID   S+ L+  Y K G++ ++  +F  +   + V+W+ VI      G     ++  + 
Sbjct: 440 CIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQ 499

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL--------------- 106
           M  S ++P+  T +  L   A L    L + IH  +++FG ES+L               
Sbjct: 500 MRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGC 559

Query: 107 -------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                  FE +    +V+   ++  +      ++A+  F     SG+VP++V  + +I  
Sbjct: 560 LENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYA 619

Query: 160 C 160
           C
Sbjct: 620 C 620


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 187/619 (30%), Positives = 311/619 (50%), Gaps = 57/619 (9%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C + +  + L++ Y   G  K AE +F ++   + V+++ +I G++  G  E +++ F  
Sbjct: 176 CSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDE 235

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-LFEGLKNPYLVSCNA 120
           M LSGL P+  T+  +L A A + +L+  + +H  ++K G+  D + EG      V C  
Sbjct: 236 MQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGD 295

Query: 121 I-VAGFINNKLFQQAVLLFNFF--------------------RGSGLVPNAVTMLTVIRG 159
           I  A  I N   +  V+L+N                      + +G+ PN  T   ++R 
Sbjct: 296 IETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRT 355

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C   G   L E IH L+IK G   D+ V+  ++DMYS    LD A +I   +E +DV+SW
Sbjct: 356 CTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSW 415

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           T M+  +V  ++  +AL  F+EM+   +  D + L +  S  A +  +++G Q+HA+V +
Sbjct: 416 TSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYV 475

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G  +++ + N+++ +Y++CG  + + S+F +I  K  ++W  +ISG+ Q+   ++AL  
Sbjct: 476 SGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMV 535

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           F+KM Q      +  T +S ++A   LA ++   Q+HG A + G      V N LIS Y 
Sbjct: 536 FMKMGQAGA-KYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYG 594

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           KCG+++ A ++F EM  LR+ VSWNTII     +G G  AL L+ +M + G  P+  T++
Sbjct: 595 KCGSIEDAKMIFSEMS-LRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFI 653

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519
            +L AC H GL  +GL  F  M     + P  +HY CVVD+L RAG L  A     ++  
Sbjct: 654 GVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPI 713

Query: 520 GMGPNIWRALLSGCVLH---------------------------------VGRFQDAEAL 546
                IWR LLS C +H                                  G++ + + +
Sbjct: 714 TANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQV 773

Query: 547 RSGSQKKGIIKIPGISFLN 565
           R   + +GI K PG S++ 
Sbjct: 774 RKMMKDRGIRKEPGRSWIE 792



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 141/576 (24%), Positives = 282/576 (48%), Gaps = 28/576 (4%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+  Y K+G + +A  +F E+  ++ VSW  ++ GY+ +G  +++ + +S M  + ++P 
Sbjct: 84  LIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVIPT 143

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPYL------------- 115
            + +  VL A    +     R IH  + K    S+ F G  L   YL             
Sbjct: 144 PYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFC 203

Query: 116 -------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
                  V+ N +++G       + A+ +F+  + SGL P+ VT+ +++  C ++G    
Sbjct: 204 DMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQK 263

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
            + +H   +K G+  D     S+LD+Y    D++ A  IF   +  +V+ W  M+  +  
Sbjct: 264 GKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQ 323

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
                 + +IF +M+ + I  +      ++      G ++ G+Q+H+  +  G +S++ +
Sbjct: 324 ISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYV 383

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
           S  +I MYSK G LD +R +   + ++ +VSWT++I+GYVQ+    EAL  F +M Q+  
Sbjct: 384 SGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEM-QDCG 442

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
              D+I L S  +A   + A+   LQ+H   + +G+    S+ N L++ Y++CG  + A+
Sbjct: 443 VWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAF 502

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
            +F E+   +D ++WN +I G+G +   + AL ++ KM + G   +  T++S ++A  + 
Sbjct: 503 SLFREIEH-KDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALANL 561

Query: 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRA 528
                G  +  + ++      + E    ++ L  + G + DA  +  + +       W  
Sbjct: 562 ADIKQGKQVHGRAVKTGHTSET-EVANALISLYGKCGSIEDAKMIFSE-MSLRNEVSWNT 619

Query: 529 LLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFL 564
           +++ C  H GR  +A  L    +++G +K   ++F+
Sbjct: 620 IITSCSQH-GRGLEALDLFDQMKQEG-LKPNDVTFI 653


>gi|302144099|emb|CBI23204.3| unnamed protein product [Vitis vinifera]
          Length = 907

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 172/552 (31%), Positives = 297/552 (53%), Gaps = 27/552 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y ++ L++ Y K G  + A  +FD + ++NVV W+ +I  Y+  G H+ +   ++ M 
Sbjct: 82  DSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMR 141

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
             G+ P+S TM+G+L   +G+  L   + +H  ++++G  SD                  
Sbjct: 142 RQGIQPSSVTMLGLL---SGVLELVHLQCLHACVIQYGFGSDVALANSMLNVYCKCGRVE 198

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               LFE +    ++S N++V+G+      ++ + L    +  G+ P+  T  +++    
Sbjct: 199 DAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSAAA 258

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
                 + +++HG  ++ GL  D  +  S++ MY    ++++A +IF  M  KDVISWT 
Sbjct: 259 MQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTA 318

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+   V  + A  A+ +FR M KSR++  T  + ++++  A LG    G  +H  ++   
Sbjct: 319 MISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVHGYILRQR 378

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           ++ ++   NS++ MY+KCG L+ S SVF++++ + +VSW AI+SG+ QNG   +AL  F 
Sbjct: 379 IKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFN 438

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +MR+ +    DSIT+VS+L A   + AL     +H    ++       +   L+  YSKC
Sbjct: 439 EMRKARQRP-DSITVVSLLQACASIGALHQGKWIHNFVTKSCLGPCILIDTALVDMYSKC 497

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G++  A   F+ M   +D+VSW++II GYG +G GETAL +Y     TG  P+   YLSI
Sbjct: 498 GDLGSAQKCFDRMP-QQDLVSWSSIIAGYGSHGKGETALRMYSDFLHTGIQPNHVIYLSI 556

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L+AC H GL + GL  F+ M ++  ++P  EH  C+VDLL+RAG + +A     ++    
Sbjct: 557 LSACSHNGLVDQGLSFFHSMTKDFGIEPRLEHRACIVDLLSRAGRVEEAYSFYKRMFPKP 616

Query: 522 GPNIWRALLSGC 533
             ++   LL  C
Sbjct: 617 SMDVLGILLDAC 628



 Score =  208 bits (529), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 153/578 (26%), Positives = 274/578 (47%), Gaps = 54/578 (9%)

Query: 38  SWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLM 97
           S++ +I+  S  G     +  +S M+ +   P++ T   ++ A   L       S H  +
Sbjct: 15  SYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQRV 74

Query: 98  VKFGLESD----------------------LFEGLKNPYLVSCNAIVAGFINNKLFQQAV 135
           +  G  SD                      +F+ + +  +V    ++  +        A 
Sbjct: 75  IVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAF 134

Query: 136 LLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMY 195
            ++N  R  G+ P++VTML ++ G + L      + +H   I+ G   DV++ NS+L++Y
Sbjct: 135 SMYNIMRRQGIQPSSVTMLGLLSGVLEL---VHLQCLHACVIQYGFGSDVALANSMLNVY 191

Query: 196 SCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALL 255
                ++ A  +F  M+ +DVISW  ++  +       + L++   M+   I  D     
Sbjct: 192 CKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFG 251

Query: 256 NLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK 315
           +L+S  A+   L  GK +H  ++  GL+ +  +  S+I MY KCG+++S+  +F  +  K
Sbjct: 252 SLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHK 311

Query: 316 SLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQL 375
            ++SWTA+ISG VQN CA  A+  F +M + +     + T+ S+L A  EL +  +   +
Sbjct: 312 DVISWTAMISGLVQNDCADMAVTVFRRMLKSRV-MPSTATIASVLAACAELGSFPLGTSV 370

Query: 376 HGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGH 435
           HG             QN L++ Y+KCG+++ +  VF+ M   RD+VSWN I+ G+  NGH
Sbjct: 371 HGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMS-RRDIVSWNAIVSGHAQNGH 429

Query: 436 GETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYG 495
              AL L+++M +  + PDS T +S+L AC   G  + G  I N  + ++ + P      
Sbjct: 430 LCKALLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKWIHN-FVTKSCLGPCILIDT 488

Query: 496 CVVDLLARAGCLSDASGLAGKLLEGMGPN---IWRALLSGCVLHVGRFQDA-----EALR 547
            +VD+ ++ G L    G A K  + M       W ++++G   H G+ + A     + L 
Sbjct: 489 ALVDMYSKCGDL----GSAQKCFDRMPQQDLVSWSSIIAGYGSH-GKGETALRMYSDFLH 543

Query: 548 SGSQKKGIIKIP-------------GISFLNSTSRDFG 572
           +G Q   +I +              G+SF +S ++DFG
Sbjct: 544 TGIQPNHVIYLSILSACSHNGLVDQGLSFFHSMTKDFG 581



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 118/428 (27%), Positives = 217/428 (50%), Gaps = 21/428 (4%)

Query: 112 NPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCEL 171
           NP   S NAI+        F   +L ++    +   P+A T  ++++ C +L   +    
Sbjct: 10  NPATKSYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLS 69

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
            H   I  G   D  +  S+++ YS      +A ++F  M+ ++V+ WT M+G +     
Sbjct: 70  FHQRVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGE 129

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
              A  ++  MR+  I   +V +L L+S   +L +L   + LHA V+  G  S++ L+NS
Sbjct: 130 HDVAFSMYNIMRRQGIQPSSVTMLGLLS--GVL-ELVHLQCLHACVIQYGFGSDVALANS 186

Query: 292 IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
           ++ +Y KCG ++ ++++F  +  + ++SW +++SGY Q G  RE L   I+M   KTD +
Sbjct: 187 MLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRM---KTDGI 243

Query: 352 --DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYI 409
             D  T  S+++A+   + L +   +HG    AG  +   ++  LI  Y KCGNV+ A+ 
Sbjct: 244 EPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFR 303

Query: 410 VFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAG 469
           +FE M   +DV+SW  +I G   N   + A+ ++ +M ++  +P ++T  S+L AC   G
Sbjct: 304 IFEGM-MHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELG 362

Query: 470 LTNDGLVIFNQMIEENKVK---PSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI- 525
               G  +   ++ + ++K   PSQ     +V + A+ G L  +  +  ++      +I 
Sbjct: 363 SFPLGTSVHGYILRQ-RIKLDIPSQ---NSLVTMYAKCGHLEQSCSVFDRMSRR---DIV 415

Query: 526 -WRALLSG 532
            W A++SG
Sbjct: 416 SWNAIVSG 423



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/250 (22%), Positives = 119/250 (47%), Gaps = 28/250 (11%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D  + + L++ Y K G ++++ ++FD +  +++VSW+ ++ G++ NG   K++  F+ M
Sbjct: 381 LDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEM 440

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK----------------------F 100
             +   P+S T+V +L A A +  L   + IH  + K                       
Sbjct: 441 RKARQRPDSITVVSLLQACASIGALHQGKWIHNFVTKSCLGPCILIDTALVDMYSKCGDL 500

Query: 101 GLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
           G     F+ +    LVS ++I+AG+ ++   + A+ +++ F  +G+ PN V  L+++  C
Sbjct: 501 GSAQKCFDRMPQQDLVSWSSIIAGYGSHGKGETALRMYSDFLHTGIQPNHVIYLSILSAC 560

Query: 161 VALG--SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
              G   + L    H +T   G+   +     ++D+ S    ++ A   ++ M  K  + 
Sbjct: 561 SHNGLVDQGL-SFFHSMTKDFGIEPRLEHRACIVDLLSRAGRVEEAYSFYKRMFPKPSMD 619

Query: 219 WTRMMGLFVD 228
              ++G+ +D
Sbjct: 620 ---VLGILLD 626


>gi|356514087|ref|XP_003525738.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g01580-like [Glycine max]
          Length = 701

 Score =  292 bits (747), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 178/561 (31%), Positives = 293/561 (52%), Gaps = 30/561 (5%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  +KL   Y +   +  A  LF+E P K V  W+ ++  Y + G   +++  F  M
Sbjct: 34  LDSFVVTKLNVLYARYASLCHAHKLFEETPCKTVYLWNALLRSYFLEGKWVETLSLFHQM 93

Query: 63  MLSGLL---PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG---------- 109
               +    P+++T+   L + +GLQ LEL + IHG + K  ++SD+F G          
Sbjct: 94  NADAVTEERPDNYTVSIALKSCSGLQKLELGKMIHGFLKK-KIDSDMFVGSALIELYSKC 152

Query: 110 ------------LKNPYLVSCNAIVAGFINNKLFQQAVLLFN-FFRGSGLVPNAVTMLTV 156
                          P +V   +I+ G+  N   + A+  F+       + P+ VT+++ 
Sbjct: 153 GQMNDAVKVFTEYPKPDVVLWTSIITGYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSA 212

Query: 157 IRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
              C  L    L   +HG   + G    + + NS+L++Y     +  A  +FREM  KD+
Sbjct: 213 ASACAQLSDFNLGRSVHGFVKRRGFDTKLCLANSILNLYGKTGSIRIAANLFREMPYKDI 272

Query: 217 ISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQ 276
           ISW+ M+  + D     +AL +F EM   RI  + V +++ +   A   +L+ GKQ+H  
Sbjct: 273 ISWSSMVACYADNGAETNALNLFNEMIDKRIELNRVTVISALRACASSSNLEEGKQIHKL 332

Query: 277 VVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
            V  G + ++ +S +++ MY KC   +++  +FN++ +K +VSW  + SGY + G A ++
Sbjct: 333 AVNYGFELDITVSTALMDMYLKCFSPENAIELFNRMPKKDVVSWAVLFSGYAEIGMAHKS 392

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
           L  F  M    T   D+I LV IL AS EL  ++  L LH    ++GF     +   LI 
Sbjct: 393 LGVFCNMLSNGTRP-DAIALVKILAASSELGIVQQALCLHAFVTKSGFDNNEFIGASLIE 451

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV-PDS 455
            Y+KC ++D A  VF+ +    DVV+W++II  YG +G GE AL L H+M+   +V P+ 
Sbjct: 452 LYAKCSSIDNANKVFKGLRH-TDVVTWSSIIAAYGFHGQGEEALKLSHQMSNHSDVKPND 510

Query: 456 STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAG 515
            T++SIL+AC HAGL  +G+ +F+ M+ E ++ P+ EHYG +VDLL R G L  A  +  
Sbjct: 511 VTFVSILSACSHAGLIEEGIKMFHVMVNEYQLMPNIEHYGIMVDLLGRMGELDKALDMIN 570

Query: 516 KLLEGMGPNIWRALLSGCVLH 536
            +    GP++W ALL  C +H
Sbjct: 571 NMPMQAGPHVWGALLGACRIH 591



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 157/307 (51%), Gaps = 7/307 (2%)

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM-GLFVDFE 230
           +H   +K+GL LD  V   +  +Y+    L  A ++F E  CK V  W  ++   F++ +
Sbjct: 23  LHSQCLKVGLALDSFVVTKLNVLYARYASLCHAHKLFEETPCKTVYLWNALLRSYFLEGK 82

Query: 231 YAGDALKIFREMRKSRII---CDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
           +  + L +F +M    +     D   +   +   + L  L+ GK +H   +   + S++ 
Sbjct: 83  WV-ETLSLFHQMNADAVTEERPDNYTVSIALKSCSGLQKLELGKMIHG-FLKKKIDSDMF 140

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
           + +++I +YSKCG ++ +  VF +  +  +V WT+II+GY QNG    AL  F +M   +
Sbjct: 141 VGSALIELYSKCGQMNDAVKVFTEYPKPDVVLWTSIITGYEQNGSPELALAFFSRMVVLE 200

Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
             S D +TLVS  +A  +L+   +   +HG     GF     + N +++ Y K G++ +A
Sbjct: 201 QVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFDTKLCLANSILNLYGKTGSIRIA 260

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
             +F EM + +D++SW++++  Y  NG    AL L+++M +     +  T +S L AC  
Sbjct: 261 ANLFREMPY-KDIISWSSMVACYADNGAETNALNLFNEMIDKRIELNRVTVISALRACAS 319

Query: 468 AGLTNDG 474
           +    +G
Sbjct: 320 SSNLEEG 326


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 171/553 (30%), Positives = 295/553 (53%), Gaps = 30/553 (5%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + L+  Y K+  +++ E +FDE+  KNVVSW+ ++ GY  NG +E+++K FS M L G+ 
Sbjct: 131 TSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIK 190

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG------------------- 109
           PN FT   VL   A    +E    +H +++K GL+S +F G                   
Sbjct: 191 PNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAV 250

Query: 110 ---LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
              ++N   VS N+++AGF+ N L  +A  LF   R  G+        TVI+ C  +   
Sbjct: 251 FDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEM 310

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME-CKDVISWTRMMGL 225
           +  + +H   IK G   D+++  +++  YS   ++D A ++F  M   ++V+SWT ++  
Sbjct: 311 SFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISG 370

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +V       A+ +F +MR+  +  +      +++ NA +       Q+HA VV    ++ 
Sbjct: 371 YVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAVSP----SQIHALVVKTNYENS 426

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
             +  ++   YSK GD + +  +F  I EK +V+W+A++SGY Q G    A+  F+++ +
Sbjct: 427 PSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAK 486

Query: 346 EKTDSVDSITLVSILTA-SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
           E  +  +  T  S+L A +   A++E   Q H  + ++GF     V + L++ Y+K GN+
Sbjct: 487 EGVEP-NEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNI 545

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           + A  VF+     RD+VSWN++I GY  +G G+ +L ++ +M       D  T++ +++A
Sbjct: 546 ESANEVFKRQ-VDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISA 604

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C HAGL N+G   F+ M+++  + P+ EHY C+VDL +RAG L  A  L  K+    G  
Sbjct: 605 CTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGAT 664

Query: 525 IWRALLSGCVLHV 537
           IWR LL+ C +H+
Sbjct: 665 IWRTLLAACRVHL 677



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 130/466 (27%), Positives = 236/466 (50%), Gaps = 29/466 (6%)

Query: 24  AENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAG 83
           ++ LFDE P++ +   + ++  +S N  +++++  F  +  SG   +  ++  VL     
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 84  LQNLELARSIHGLMVKFGLESD----------------------LFEGLKNPYLVSCNAI 121
           L +  + + +H   +K G   D                      +F+ ++   +VS  ++
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 122 VAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGL 181
           +AG+  N L +QA+ LF+  +  G+ PN  T   V+ G  A G+      +H + IK GL
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGL 224

Query: 182 ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFRE 241
              + V NS+++MYS  + +  A  +F  ME ++ +SW  M+  FV      +A ++F  
Sbjct: 225 DSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYR 284

Query: 242 MRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGD 301
           MR   +         +I + A + ++   KQLH QV+  G   +L +  +++  YSKC +
Sbjct: 285 MRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSE 344

Query: 302 LDSSRSVFNQITE-KSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSIL 360
           +D +  +F  +   +++VSWTAIISGYVQNG    A+N F +MR+E     +  T  +IL
Sbjct: 345 IDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRP-NHFTYSTIL 403

Query: 361 TASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDV 420
           TA+  ++      Q+H +  +  +    SV   L  SYSK G+ + A  +FE +   +D+
Sbjct: 404 TANAAVSP----SQIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELID-EKDI 458

Query: 421 VSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           V+W+ ++ GY   G  E A+ ++ ++ + G  P+  T+ S+LNAC 
Sbjct: 459 VAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACA 504



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 100/220 (45%), Gaps = 29/220 (13%)

Query: 5   PYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML 64
           P   + L  +Y K G   EA  +F+ I EK++V+WS ++ GY+  G  E ++K F  +  
Sbjct: 427 PSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAK 486

Query: 65  SGLLPNSFTMVGVLVA-AAGLQNLELARSIHGLMVKFGLE-------------------- 103
            G+ PN FT   VL A AA   ++E  +  H   +K G                      
Sbjct: 487 EGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIE 546

Query: 104 --SDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
             +++F+   +  LVS N++++G+  +   ++++ +F   R   L  + +T + VI  C 
Sbjct: 547 SANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACT 606

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDL 201
             G     +    L +K   I+        ++ YSC++DL
Sbjct: 607 HAGLVNEGQRYFDLMVKDYHIV------PTMEHYSCMVDL 640


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  291 bits (745), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 176/564 (31%), Positives = 291/564 (51%), Gaps = 28/564 (4%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           ++ Y  + L++ Y +      AE +F ++  K+ VS++ +I G +  GF + +++ F+ M
Sbjct: 246 LETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKM 305

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF-EGLKNPYLVSC--- 118
               L P+  T+  +L A A    L     +H  ++K G+ SD+  EG      V+C   
Sbjct: 306 KRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDI 365

Query: 119 ------------------NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                             N ++  F       ++  +F   +  GL+PN  T  +++R C
Sbjct: 366 KTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTC 425

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
            ++G+  L E IH   IK G   +V V + ++DMY+    LD A  I R +   DV+SWT
Sbjct: 426 TSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWT 485

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++  +       +ALK F+EM    I  D +   + IS  A +  L +G+Q+HAQ  + 
Sbjct: 486 ALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVS 545

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           G   +L + N+++++Y++CG +  +   F +I  K  +SW  +ISG+ Q+G   +AL  F
Sbjct: 546 GYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVF 605

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            +M + K ++    T  S ++A+  +A ++   Q+H +  + GF     V N LI+ Y+K
Sbjct: 606 AQMNRAKLEA-SFFTFGSAVSAAANIANIKQGKQIHAMIIKRGFDSDIEVSNALITFYAK 664

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CG+++ A   F EM    DV SWN +I GY  +G+G  A+ L+ KM + GE+P+  T++ 
Sbjct: 665 CGSIEDARREFCEMPEKNDV-SWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVG 723

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           +L+AC H GL   GL  F  M +E+ + P   HY CVVDL++RAG LS A     ++   
Sbjct: 724 VLSACSHVGLVTKGLGYFESMSKEHGLVPKPAHYACVVDLISRAGFLSRARKFIEEMPIE 783

Query: 521 MGPNIWRALLSGCVLH----VGRF 540
               IWR LLS C +H    VG F
Sbjct: 784 PDATIWRTLLSACTVHKNVEVGEF 807



 Score =  231 bits (590), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 150/554 (27%), Positives = 274/554 (49%), Gaps = 26/554 (4%)

Query: 5   PYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML 64
           P  S+ L+  Y K+G I  A  +FD +  K+ VSW  +I G+S NG+ E+++  F  M  
Sbjct: 147 PIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHT 206

Query: 65  SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG--LES------------------ 104
           +G+ P  +    VL     ++  ++   +H L+ K+G  LE+                  
Sbjct: 207 AGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVS 266

Query: 105 --DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA 162
              +F  +++   VS N++++G         A+ LF   +   L P+ VT+ +++  C +
Sbjct: 267 AEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACAS 326

Query: 163 LGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
            G+    E +H   IK G+  D+ V  ++LD+Y    D+  A ++F   + ++V+ W  M
Sbjct: 327 NGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVM 386

Query: 223 MGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL 282
           +  F   +   ++ +IFR+M+   +I +     +++     +G L  G+Q+H QV+  G 
Sbjct: 387 LVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGF 446

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
           Q  + + + +I MY+K G LD++  +   +TE  +VSWTA+ISGY Q+    EAL  F +
Sbjct: 447 QFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKE 506

Query: 343 MRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
           M      S D+I   S ++A   + AL    Q+H  ++ +G+    S+ N L+S Y++CG
Sbjct: 507 MLNRGIQS-DNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIGNALVSLYARCG 565

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
            +  AY+ FE++   +D +SWN +I G+  +G+ E AL ++ +M          T+ S +
Sbjct: 566 RIKEAYLEFEKID-AKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAV 624

Query: 463 NACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMG 522
           +A  +      G  I + MI +       E    ++   A+ G + DA     ++ E   
Sbjct: 625 SAAANIANIKQGKQI-HAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCEMPEKND 683

Query: 523 PNIWRALLSGCVLH 536
            + W A+++G   H
Sbjct: 684 VS-WNAMITGYSQH 696



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 124/476 (26%), Positives = 226/476 (47%), Gaps = 25/476 (5%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           LL  Y     IK A  +F     +NVV W++++  +       +S + F  M + GL+PN
Sbjct: 355 LLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPN 414

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF----------------------E 108
            FT   +L     +  L+L   IH  ++K G + +++                       
Sbjct: 415 QFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILR 474

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            L    +VS  A+++G+  + LF +A+  F      G+  + +   + I  C  + +   
Sbjct: 475 TLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQ 534

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
              IH  +   G   D+S+ N+++ +Y+    +  A   F +++ KD ISW  ++  F  
Sbjct: 535 GRQIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQ 594

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
             Y  DALK+F +M ++++        + +S  A + ++K+GKQ+HA ++  G  S++ +
Sbjct: 595 SGYCEDALKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQIHAMIIKRGFDSDIEV 654

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
           SN++I  Y+KCG ++ +R  F ++ EK+ VSW A+I+GY Q+G   EA+N F KM+Q   
Sbjct: 655 SNALITFYAKCGSIEDARREFCEMPEKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQ-VG 713

Query: 349 DSVDSITLVSILTASGELAALEICL-QLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
           +  + +T V +L+A   +  +   L     ++ E G     +   C++   S+ G +  A
Sbjct: 714 EMPNHVTFVGVLSACSHVGLVTKGLGYFESMSKEHGLVPKPAHYACVVDLISRAGFLSRA 773

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
               EEM    D   W T++    V+ + E        + E  E  DS+TY+ + N
Sbjct: 774 RKFIEEMPIEPDATIWRTLLSACTVHKNVEVGEFAAQHLLEL-EPEDSATYVLLSN 828



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 139/550 (25%), Positives = 256/550 (46%), Gaps = 33/550 (6%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           +KL+  YF  G +     +F+++P ++V SW  +I G+       + +  FS M+   + 
Sbjct: 49  NKLVDVYFALGDLDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVS 108

Query: 69  PNSFTMVGVLVAAAGLQ-NLELARSIH-------------------GLMVKFGL---ESD 105
           P   +   VL A +G +  +  A  IH                   GL  K GL      
Sbjct: 109 PTEISFASVLRACSGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARK 168

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F+ L     VS  A+++GF  N   ++A+ LF     +G+ P      +V+ GC  +  
Sbjct: 169 VFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKL 228

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
             + E +H L  K G  L+  V N+++ +YS + +  +A ++F +M+ KD +S+  ++  
Sbjct: 229 FDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISG 288

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
                ++  AL++F +M++  +  D V + +L+S  A  G L +G+QLH+ V+  G+ S+
Sbjct: 289 LAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSD 348

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           + +  +++ +Y  C D+ ++  +F     +++V W  ++  + +     E+   F +M Q
Sbjct: 349 MIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQM-Q 407

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
            K    +  T  SIL     + AL++  Q+H    + GF     V + LI  Y+K G +D
Sbjct: 408 IKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLD 467

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            A+++   +    DVVSW  +I GY  +     AL  + +M   G   D+  + S ++AC
Sbjct: 468 TAHVILRTLT-EDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISAC 526

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYG---CVVDLLARAGCLSDASGLAGKLLEGMG 522
                 N G     Q+  ++ V    E       +V L AR G + +A  L  + ++   
Sbjct: 527 AGIQALNQG----RQIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAY-LEFEKIDAKD 581

Query: 523 PNIWRALLSG 532
              W  L+SG
Sbjct: 582 SISWNGLISG 591



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 99/342 (28%), Positives = 177/342 (51%), Gaps = 7/342 (2%)

Query: 145 GLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAA 204
           G+  N  T + ++  C+  GS   C+ +HG  +KLG   +  + N ++D+Y  L DLD  
Sbjct: 5   GICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGV 64

Query: 205 IQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAIL 264
           +++F +M  + V SW +++  F++ + +   L +F  M +  +    ++  +++   A  
Sbjct: 65  VKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVL--RACS 122

Query: 265 GD---LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWT 321
           G    ++  +Q+HA+++  GL     +SN +I +Y+K G + S+R VF+ +  K  VSW 
Sbjct: 123 GHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWV 182

Query: 322 AIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFE 381
           A+ISG+ QNG   EA++ F +M          +   S+L+   ++   ++  QLH + F+
Sbjct: 183 AMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYV-FSSVLSGCTKIKLFDVGEQLHALVFK 241

Query: 382 AGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALA 441
            G      V N L++ YS+  N   A  VF +M   +D VS+N++I G    G  + AL 
Sbjct: 242 YGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQ-SKDEVSFNSLISGLAQQGFSDGALE 300

Query: 442 LYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIE 483
           L+ KM      PD  T  S+L+AC   G    G  + + +I+
Sbjct: 301 LFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIK 342


>gi|77554180|gb|ABA96976.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 780

 Score =  291 bits (745), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 175/555 (31%), Positives = 296/555 (53%), Gaps = 26/555 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L++ Y   GK  +A  +FDE+PE++VVSW+ ++  + +NG    + +A   MM
Sbjct: 153 DVFTGNTLVAFYAACGKACDARRVFDEMPERDVVSWNSLVSAFLVNGMFHDARRALVSMM 212

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES------------------- 104
            SG   N  ++V V+ A    Q  +   SIH L VK GL +                   
Sbjct: 213 RSGFPLNVASLVSVVPACGTEQEEKFGLSIHALAVKVGLNTMVNLANALVDMYGKFGDVE 272

Query: 105 ---DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +F+G+     VS N+ +  F+N   +   + +F       ++P ++T+ +++   V
Sbjct: 273 ASMQVFDGMLEQNEVSWNSAIGCFLNAGFYGDVLRMFRKMSEHNVMPGSITLSSLLPALV 332

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            LGS  L   +HG +IK  + LD+ V NS++DMY+    L+ A  IF +M+ ++V+SW  
Sbjct: 333 ELGSFDLGREVHGYSIKRAMDLDIFVANSLVDMYAKFGSLEKASTIFEQMKDRNVVSWNA 392

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+   V      +A ++  +M+KS    +++ L+N++   A +  LK GKQ+HA  +  G
Sbjct: 393 MIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLPACARMASLKMGKQIHAWSIRRG 452

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           L  +L +SN++I MYSKCG L  +R++F + +EK  VS+  +I GY Q+    E+L  F 
Sbjct: 453 LMFDLFISNALIDMYSKCGQLSLARNIFER-SEKDDVSYNTLILGYSQSPWCFESLLLFK 511

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +MR    D  D+++ +  L+A   L+  +   ++H +        +  + N L+  Y+K 
Sbjct: 512 QMRSVGID-YDAVSFMGALSACTNLSVFKHGKEIHCVLVRRLLSGHPFLSNSLLDLYTKG 570

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G +  A  +F ++   +DV SWNT+I GYG++G  + A  L+  M   G   D  +Y+++
Sbjct: 571 GMLVTASKIFNKIT-KKDVASWNTMILGYGMHGQIDIAFELFELMKGDGLDYDHVSYIAV 629

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L AC H GL + G   F+QM+ +N ++P Q HY C+VDLL RAG LS  + +   +    
Sbjct: 630 LAACSHGGLVDKGKKYFSQMVAQN-IEPQQMHYACMVDLLGRAGQLSKCAEIIRDMPFPA 688

Query: 522 GPNIWRALLSGCVLH 536
             ++W ALL  C +H
Sbjct: 689 NSDVWGALLGACRIH 703



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 89/295 (30%), Positives = 154/295 (52%), Gaps = 2/295 (0%)

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           +H   ++ G + DV   N+++  Y+       A ++F EM  +DV+SW  ++  F+    
Sbjct: 141 LHASALRRGHLADVFTGNTLVAFYAACGKACDARRVFDEMPERDVVSWNSLVSAFLVNGM 200

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
             DA +    M +S    +  +L++++       + K G  +HA  V  GL + + L+N+
Sbjct: 201 FHDARRALVSMMRSGFPLNVASLVSVVPACGTEQEEKFGLSIHALAVKVGLNTMVNLANA 260

Query: 292 IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
           ++ MY K GD+++S  VF+ + E++ VSW + I  ++  G   + L  F KM  E     
Sbjct: 261 LVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFLNAGFYGDVLRMFRKM-SEHNVMP 319

Query: 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVF 411
            SITL S+L A  EL + ++  ++HG + +        V N L+  Y+K G+++ A  +F
Sbjct: 320 GSITLSSLLPALVELGSFDLGREVHGYSIKRAMDLDIFVANSLVDMYAKFGSLEKASTIF 379

Query: 412 EEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           E+M   R+VVSWN +I     NG    A  L   M ++GE P+S T +++L AC 
Sbjct: 380 EQMKD-RNVVSWNAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLPACA 433



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 157/321 (48%), Gaps = 21/321 (6%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D + ++ L+  Y K G +++A  +F+++ ++NVVSW+ +I     NG   ++ +  + M
Sbjct: 354 LDIFVANSLVDMYAKFGSLEKASTIFEQMKDRNVVSWNAMIANLVQNGAETEAFRLVTDM 413

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPYL----- 115
             SG  PNS T+V VL A A + +L++ + IH   ++ GL  DLF    L + Y      
Sbjct: 414 QKSGECPNSITLVNVLPACARMASLKMGKQIHAWSIRRGLMFDLFISNALIDMYSKCGQL 473

Query: 116 --------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                         VS N ++ G+  +    +++LLF   R  G+  +AV+ +  +  C 
Sbjct: 474 SLARNIFERSEKDDVSYNTLILGYSQSPWCFESLLLFKQMRSVGIDYDAVSFMGALSACT 533

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            L      + IH + ++  L     ++NS+LD+Y+    L  A +IF ++  KDV SW  
Sbjct: 534 NLSVFKHGKEIHCVLVRRLLSGHPFLSNSLLDLYTKGGMLVTASKIFNKITKKDVASWNT 593

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+  +        A ++F  M+   +  D V+ + +++  +  G + +GK+  +Q+V   
Sbjct: 594 MILGYGMHGQIDIAFELFELMKGDGLDYDHVSYIAVLAACSHGGLVDKGKKYFSQMVAQN 653

Query: 282 LQSELRLSNSIIAMYSKCGDL 302
           ++ +      ++ +  + G L
Sbjct: 654 IEPQQMHYACMVDLLGRAGQL 674


>gi|356514095|ref|XP_003525742.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g01580-like [Glycine max]
          Length = 700

 Score =  291 bits (744), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 175/560 (31%), Positives = 293/560 (52%), Gaps = 29/560 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  +KL   Y +   +  A  LF+E P K V  W+ ++  Y + G   +++  F  M 
Sbjct: 35  DSFVVTKLNVLYARYASLCHAHKLFEETPCKTVYLWNALLRSYFLEGKWVETLSLFHQMN 94

Query: 64  LSGLL---PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG----------- 109
              +    P+++T+   L + +GLQ LEL + IHG + K  +++D+F G           
Sbjct: 95  ADAITEERPDNYTVSIALKSCSGLQKLELGKMIHGFLKKKKIDNDMFVGSALIELYSKCG 154

Query: 110 -----------LKNPYLVSCNAIVAGFINNKLFQQAVLLFN-FFRGSGLVPNAVTMLTVI 157
                           +V   +I+ G+  N   + A+  F+       + P+ VT+++  
Sbjct: 155 QMNDAVKVFTEYPKQDVVLWTSIITGYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAA 214

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
             C  L    L   +HG   + G    + + NS+L++Y     + +A  +FREM  KD+I
Sbjct: 215 SACAQLSDFNLGRSVHGFVKRRGFDTKLCLANSILNLYGKTGSIRSAANLFREMPYKDII 274

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           SW+ M+  + D     +AL +F EM   RI  + V +++ +   A   +L+ GK +H   
Sbjct: 275 SWSSMVACYADNGAETNALNLFNEMIDKRIELNRVTVISALRACASSSNLEEGKHIHKLA 334

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           V  G + ++ +S +++ MY KC    ++  +FN++ +K +VSW  + SGY + G A ++L
Sbjct: 335 VNYGFELDITVSTALMDMYMKCFSPKNAIDLFNRMPKKDVVSWAVLFSGYAEIGMAHKSL 394

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
             F  M    T   D+I LV IL AS EL  ++  L LH    ++GF     +   LI  
Sbjct: 395 GVFCNMLSYGTRP-DAIALVKILAASSELGIVQQALCLHAFVSKSGFDNNEFIGASLIEL 453

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV-PDSS 456
           Y+KC ++D A  VF+ M   +DVV+W++II  YG +G GE AL L+++M+   +V P+  
Sbjct: 454 YAKCSSIDNANKVFKGMR-RKDVVTWSSIIAAYGFHGQGEEALKLFYQMSNHSDVKPNDV 512

Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK 516
           T++SIL+AC HAGL  +G+ +F+ M+ E ++ P+ EHYG +VDLL R G L  A  +  +
Sbjct: 513 TFVSILSACSHAGLIEEGIKMFHVMVNEYQLMPNTEHYGIMVDLLGRMGELDKALDMINE 572

Query: 517 LLEGMGPNIWRALLSGCVLH 536
           +    GP++W ALL  C +H
Sbjct: 573 MPMQAGPHVWGALLGACRIH 592



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 156/307 (50%), Gaps = 6/307 (1%)

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM-GLFVDFE 230
           +H   +K+GL  D  V   +  +Y+    L  A ++F E  CK V  W  ++   F++ +
Sbjct: 23  LHSQCLKVGLAHDSFVVTKLNVLYARYASLCHAHKLFEETPCKTVYLWNALLRSYFLEGK 82

Query: 231 YAGDALKIFREMRKSRII---CDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
           +  + L +F +M    I     D   +   +   + L  L+ GK +H  +    + +++ 
Sbjct: 83  WV-ETLSLFHQMNADAITEERPDNYTVSIALKSCSGLQKLELGKMIHGFLKKKKIDNDMF 141

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
           + +++I +YSKCG ++ +  VF +  ++ +V WT+II+GY QNG    AL  F +M   +
Sbjct: 142 VGSALIELYSKCGQMNDAVKVFTEYPKQDVVLWTSIITGYEQNGSPELALAFFSRMVVLE 201

Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
             S D +TLVS  +A  +L+   +   +HG     GF     + N +++ Y K G++  A
Sbjct: 202 QVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFDTKLCLANSILNLYGKTGSIRSA 261

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
             +F EM + +D++SW++++  Y  NG    AL L+++M +     +  T +S L AC  
Sbjct: 262 ANLFREMPY-KDIISWSSMVACYADNGAETNALNLFNEMIDKRIELNRVTVISALRACAS 320

Query: 468 AGLTNDG 474
           +    +G
Sbjct: 321 SSNLEEG 327


>gi|115468242|ref|NP_001057720.1| Os06g0506100 [Oryza sativa Japonica Group]
 gi|52075894|dbj|BAD45840.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113595760|dbj|BAF19634.1| Os06g0506100 [Oryza sativa Japonica Group]
          Length = 766

 Score =  291 bits (744), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 177/554 (31%), Positives = 291/554 (52%), Gaps = 30/554 (5%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + L++ Y +      A  +FDE+P +N VSW+ VI  +  NG    ++  FS M+ SG  
Sbjct: 90  NHLITMYGRCAAPDSARQVFDEMPARNPVSWASVIAAHVQNGRAGDALGLFSSMLRSGTA 149

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------------- 106
            + F +   + A   L ++   R +H   +K    SDL                      
Sbjct: 150 ADQFALGSAVRACTELGDVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFML 209

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFN--FFRGSGLVPNAVTMLTVIRGCVALG 164
           FE +K+  L+S  +I+AGF       +A+ +F      GS   PN     +  R C A+G
Sbjct: 210 FERIKDKDLISWGSIIAGFAQQGFEMEALQVFREMIVEGSHH-PNEFHFGSAFRACGAVG 268

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
           S    E IHGL+IK  L  D+ V  S+ DMY+   +LD+A   F  +E  D++SW  ++ 
Sbjct: 269 SWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARCKNLDSARVAFYRIEAPDLVSWNSIVN 328

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            +       +AL +F EMR S +  D + +  L+        L  G+ +H+ +V  GL  
Sbjct: 329 AYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKLGLDG 388

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           ++ + NS+++MY++C DL S+  VF++I ++ +V+W +I++   Q+    E L  F  + 
Sbjct: 389 DVSVCNSLLSMYARCSDLSSAMDVFHEIKDQDVVTWNSILTACAQHNHPEEVLKLFSLLN 448

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
           + +  S+D I+L ++L+AS EL   E+  Q+H  AF+AG    R + N LI +Y+KCG++
Sbjct: 449 KSEP-SLDRISLNNVLSASAELGYFEMVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCGSL 507

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           D A  +FE MG  RDV SW+++I GY   G+ + A  L+ +M   G  P+  T++ +L A
Sbjct: 508 DDAMRLFEIMGNNRDVFSWSSLIVGYAQFGYAKEAFDLFSRMRSLGIRPNHVTFIGVLTA 567

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C   G  N+G   ++ M  E  + P++EH  C+VDLLARAG L++A+    ++     P+
Sbjct: 568 CSRVGFVNEGCYYYSIMEPEYGIVPTREHCSCIVDLLARAGKLTEAANFIDQM--PFEPD 625

Query: 525 I--WRALLSGCVLH 536
           I  W+ LL+   +H
Sbjct: 626 IIMWKTLLAASKMH 639



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 92/279 (32%), Positives = 145/279 (51%), Gaps = 1/279 (0%)

Query: 187 VNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSR 246
           + N ++ MY      D+A Q+F EM  ++ +SW  ++   V    AGDAL +F  M +S 
Sbjct: 88  LGNHLITMYGRCAAPDSARQVFDEMPARNPVSWASVIAAHVQNGRAGDALGLFSSMLRSG 147

Query: 247 IICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSR 306
              D  AL + +     LGD+  G+Q+HA  +     S+L + N+++ MYSK G +D   
Sbjct: 148 TAADQFALGSAVRACTELGDVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGF 207

Query: 307 SVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGEL 366
            +F +I +K L+SW +II+G+ Q G   EAL  F +M  E +   +     S   A G +
Sbjct: 208 MLFERIKDKDLISWGSIIAGFAQQGFEMEALQVFREMIVEGSHHPNEFHFGSAFRACGAV 267

Query: 367 AALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTI 426
            + E   Q+HG++ +    R   V   L   Y++C N+D A + F  +    D+VSWN+I
Sbjct: 268 GSWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARCKNLDSARVAFYRIE-APDLVSWNSI 326

Query: 427 IYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
           +  Y V G    AL L+ +M ++G  PD  T   +L AC
Sbjct: 327 VNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCAC 365



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 92/411 (22%), Positives = 184/411 (44%), Gaps = 33/411 (8%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y    L   Y +   +  A   F  I   ++VSW+ +++ YS+ G   +++  FS M 
Sbjct: 288 DLYVGCSLSDMYARCKNLDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMR 347

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES------------------- 104
            SGL P+  T+ G+L A  G   L   R IH  +VK GL+                    
Sbjct: 348 DSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLS 407

Query: 105 ---DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
              D+F  +K+  +V+ N+I+     +   ++ + LF+    S    + +++  V+    
Sbjct: 408 SAMDVFHEIKDQDVVTWNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASA 467

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM-ECKDVISWT 220
            LG   + + +H    K GL+ D  ++N+++D Y+    LD A+++F  M   +DV SW+
Sbjct: 468 ELGYFEMVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWS 527

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++  +  F YA +A  +F  MR   I  + V  + +++  + +G +  G   ++ +   
Sbjct: 528 SLIVGYAQFGYAKEAFDLFSRMRSLGIRPNHVTFIGVLTACSRVGFVNEGCYYYSIMEPE 587

Query: 281 -GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISGYVQNG---CARE 335
            G+       + I+ + ++ G L  + +  +Q+  E  ++ W  +++    +      + 
Sbjct: 588 YGIVPTREHCSCIVDLLARAGKLTEAANFIDQMPFEPDIIMWKTLLAASKMHNDMEMGKR 647

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASG---ELAALEICLQLHGIAFEAG 383
           A    + +  + + S   + L +I  ASG   E A L+  ++  G+    G
Sbjct: 648 AAEGILNI--DPSHSAAYVLLCNIYAASGNWNEFARLKKAMRTSGVKKSPG 696


>gi|224117876|ref|XP_002317690.1| predicted protein [Populus trichocarpa]
 gi|222860755|gb|EEE98302.1| predicted protein [Populus trichocarpa]
          Length = 706

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 177/623 (28%), Positives = 316/623 (50%), Gaps = 59/623 (9%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D + +S L+  Y  +G I++A   FD++ +K+ V W+++I+GY   G  + ++K F  M
Sbjct: 43  LDMFVASSLIKLYADNGCIEDARRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDM 102

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE------------------- 103
           M S   P+S T   VL  +     +E  R +HGL+V+ GL+                   
Sbjct: 103 MSSEAKPDSVTFACVLSISCSEAMVEYGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQL 162

Query: 104 ---SDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                LF+ +    LV  N ++ G++ N     A +LFN    +G+ P+++T  + +   
Sbjct: 163 GDARKLFDMMPQIDLVVWNRMIGGYVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSL 222

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
               S    + IHG  ++ G+ILDV +N++++D+Y    D   A ++F      D++ +T
Sbjct: 223 AESSSLKQIKEIHGYIVRHGVILDVYLNSALIDLYFKCRDAVMACKMFNLSTKFDIVIYT 282

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+  +V      DAL+IFR + + ++I + +   +++   A L  +K G++LH  ++  
Sbjct: 283 AMISGYVLNGMNKDALEIFRWLLQKKMIPNALTFSSILPACAGLAAIKLGRELHGYIIKN 342

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
            L+ +  + ++I+ MY+KCG LD +  +F +I+ K  + W +II+ + Q+G   EA+  F
Sbjct: 343 ELEEKCPVGSAIMNMYAKCGRLDLAHLIFGRISIKDAICWNSIITSFSQDGKPEEAIYLF 402

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            +M  E     D +T+ + L+A   + AL    ++HG   +  F       + LI+ Y+K
Sbjct: 403 RQMGMEGV-KYDCVTVSAALSACANIPALHYGKEIHGFMIKGAFESDLFDMSALINMYAK 461

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CG +++A +VF  M   ++ V+WN+II  YG +G+   +LAL+H M E G  PD  T+L+
Sbjct: 462 CGKLNIARLVFNLMQ-EKNEVAWNSIIAAYGYHGYLADSLALFHNMLEEGIQPDHITFLT 520

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           IL++CGHAG   DG+  F  M EE  +    EHY C+ DL  RAG L +A  +   +   
Sbjct: 521 ILSSCGHAGQVEDGVRYFRCMTEEYGIPAQMEHYACMADLFGRAGHLDEAFEVITSMPFP 580

Query: 521 MGPNIWRALLSGCVLH---------------------------------VGRFQDAEALR 547
              ++W  LL  C +H                                  G+++    ++
Sbjct: 581 PAASVWGTLLGACRVHGNVELAEVASRYLLDLEPKNSGYYLLLTHVLADAGKWRSVHKIQ 640

Query: 548 SGSQKKGIIKIPGISFL--NSTS 568
              +++G+ K+PG S++  N+T+
Sbjct: 641 HLMKERGVQKVPGCSWIEVNNTT 663



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 107/382 (28%), Positives = 194/382 (50%), Gaps = 17/382 (4%)

Query: 143 GSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLD 202
           G G+ P+  T   VI+ C  L +  L ++I  + +++G  LD+ V +S++ +Y+    ++
Sbjct: 3   GCGVFPDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGCIE 62

Query: 203 AAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNA 262
            A + F +M  KD + W  M+  +V    +  A+K+F++M  S    D+V    ++S++ 
Sbjct: 63  DARRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSISC 122

Query: 263 ILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTA 322
               ++ G+QLH  VV  GL     + N+++ +YSK   L  +R +F+ + +  LV W  
Sbjct: 123 SEAMVEYGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMPQIDLVVWNR 182

Query: 323 IISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEA 382
           +I GYVQNG   +A   F +M        DSIT  S L +  E ++L+   ++HG     
Sbjct: 183 MIGGYVQNGFMDDASMLFNEMISAGIKP-DSITFTSFLPSLAESSSLKQIKEIHGYIVRH 241

Query: 383 GFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALAL 442
           G      + + LI  Y KC +  +A  +F  +    D+V +  +I GY +NG  + AL +
Sbjct: 242 GVILDVYLNSALIDLYFKCRDAVMACKMF-NLSTKFDIVIYTAMISGYVLNGMNKDALEI 300

Query: 443 YHKMTETGEVPDSSTYLSILNACGHAGLTN-------DGLVIFNQMIEENKVKPSQEHYG 495
           +  + +   +P++ T+ SIL AC  AGL          G +I N++ E+  V  +     
Sbjct: 301 FRWLLQKKMIPNALTFSSILPAC--AGLAAIKLGRELHGYIIKNELEEKCPVGSA----- 353

Query: 496 CVVDLLARAGCLSDASGLAGKL 517
            ++++ A+ G L  A  + G++
Sbjct: 354 -IMNMYAKCGRLDLAHLIFGRI 374


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 190/617 (30%), Positives = 316/617 (51%), Gaps = 64/617 (10%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           +++L   +    +I+ A ++FD+IP+ +VV W+++I  Y+ +G  ++S+  + HM+  G+
Sbjct: 44  ATQLARYHISRNEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGV 103

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY----------- 114
            P +FT   +L A + LQ L+L R IH      GL  DL+    L + Y           
Sbjct: 104 TPTNFTFPFLLKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQT 163

Query: 115 -----------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
                      +V+ NA++A F  + L  Q +      + +G+ PN+ T+++++      
Sbjct: 164 LFNSISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQA 223

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
            +    + IH   I+     +V +  ++LDMY+    L  A +IF  +  K+ + W+ M+
Sbjct: 224 NALHQGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMI 283

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALL-NLISVNAILGDLKRGKQLHAQVVLGGL 282
           G +V  +   DAL ++ +M     +  T A L  ++   A L DLKRGK+LH  ++  G+
Sbjct: 284 GGYVLHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGM 343

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
             +  + NS+I+MY+KCG +D++    +++  K  VS++AIISG VQNG A +AL  F  
Sbjct: 344 DLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIF-- 401

Query: 343 MRQEKTDSVDSI--TLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            RQ ++  +     T++++L A   LAAL+     HG     GF    S+ N +I  YSK
Sbjct: 402 -RQMQSSGIAPYLETMIALLPACSHLAALQHGTCCHGYTVVRGFTNDTSICNAIIDMYSK 460

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CG + ++  +F+ M   RD++SWNT+I GYG++G    AL+L+ ++   G  PD  T ++
Sbjct: 461 CGKITISREIFDRMQN-RDIISWNTMIIGYGIHGLCVEALSLFQELQALGLKPDDVTLIA 519

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           +L+AC H+GL  +G   F+ M +   +KP   HY C+VDLLARAG L +A     ++   
Sbjct: 520 VLSACSHSGLVTEGKYWFSSMSQNFNIKPRMAHYICMVDLLARAGNLDEAYTFIQRMPFV 579

Query: 521 MGPNIWRALLSGCVLH---------------------------------VGRFQDAEALR 547
               IW ALL+ C  H                                 VGR+ DA  +R
Sbjct: 580 PNVRIWGALLAACRTHKNIEMGEQVSKKIQLLGPEGTGNFVLMSNIYSSVGRWDDAAYIR 639

Query: 548 SGSQKKGIIKIPGISFL 564
           S  +  G  K PG S++
Sbjct: 640 SIQRHHGYKKSPGCSWV 656



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 85/180 (47%), Gaps = 22/180 (12%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D    + L+S Y K G +  A    DE+  K+ VS+S +I G   NG+ EK++  F  M
Sbjct: 345 LDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQM 404

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
             SG+ P   TM+ +L A + L  L+     HG  V  G  +D                 
Sbjct: 405 QSSGIAPYLETMIALLPACSHLAALQHGTCCHGYTVVRGFTNDTSICNAIIDMYSKCGKI 464

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +F+ ++N  ++S N ++ G+  + L  +A+ LF   +  GL P+ VT++ V+  C
Sbjct: 465 TISREIFDRMQNRDIISWNTMIIGYGIHGLCVEALSLFQELQALGLKPDDVTLIAVLSAC 524


>gi|449524410|ref|XP_004169216.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 684

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 188/618 (30%), Positives = 319/618 (51%), Gaps = 60/618 (9%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + LL  Y   G + +A  LFDE+PE++VVSW+ +I   S+NG + ++   +  M+
Sbjct: 44  DVYVGNTLLMLYGNCGFLNDARRLFDEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMI 103

Query: 64  LSGLL-PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------- 106
           L  ++ PN  +++ +L  +A L++ E+ R IH   VK GL+S +                
Sbjct: 104 LRSVIKPNLVSVISLLPISAALEDEEMTRRIHCYSVKVGLDSQVTTCNALVDAYGKCGSV 163

Query: 107 ------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                 F        VS N+I+ G         A+  F     +G  PN+VT+ +++   
Sbjct: 164 KALWQVFNETVEKNEVSWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVL 223

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
           V L      + IHG ++++G   D+ + NS++DMY+       A  IF  ++ ++++SW 
Sbjct: 224 VELECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWN 283

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+  +       +A++   +M+++    + V   N++   A LG L  GK++HA  V  
Sbjct: 284 AMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEIHAMGVRI 343

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           GL S+L +SNS+I MY+KCG L S+R+VFN  + K  VS+  +I GY +     ++LN F
Sbjct: 344 GLTSDLFVSNSLIDMYAKCGCLHSARNVFNT-SRKDEVSYNILIIGYSETDDCLQSLNLF 402

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            +MR       D ++ V +++A   LAAL+   ++HG+A       +  V N L+  Y+K
Sbjct: 403 SEMRLLGKKP-DVVSFVGVISACANLAALKQGKEVHGVALRNHLYSHLFVSNSLLDFYTK 461

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CG +D+A  +F ++ F +DV SWNT+I GYG+ G  ETA++++  M +     D  +Y++
Sbjct: 462 CGRIDIACRLFNQILF-KDVASWNTMILGYGMIGELETAISMFEAMRDDTVQYDLVSYIA 520

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           +L+AC H GL   G   F++M+ + +++P++ HY C+VDLL RAG + +A+ L  +L   
Sbjct: 521 VLSACSHGGLVERGWQYFSEMLAQ-RLEPTEMHYTCMVDLLGRAGFVEEAAKLIQQLPIA 579

Query: 521 MGPNIWRALLSGCVLH---------------------------------VGRFQDAEALR 547
              NIW ALL  C ++                                  GR+ +A  +R
Sbjct: 580 PDANIWGALLGACRIYGNVELGRRAAEHLFELKPQHCGYYILLSNIYAETGRWDEANKIR 639

Query: 548 SGSQKKGIIKIPGISFLN 565
              + +G  K PG S++ 
Sbjct: 640 ELMKSRGAKKNPGCSWVQ 657



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 105/342 (30%), Positives = 180/342 (52%), Gaps = 8/342 (2%)

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF-VDFE 230
           +HG+  KLG   DV V N++L +Y     L+ A ++F EM  +DV+SW  ++GL  V+ +
Sbjct: 32  VHGVVFKLGFDTDVYVGNTLLMLYGNCGFLNDARRLFDEMPERDVVSWNTIIGLLSVNGD 91

Query: 231 YAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSN 290
           Y       F  + +S I  + V++++L+ ++A L D +  +++H   V  GL S++   N
Sbjct: 92  YTEARNYYFWMILRSVIKPNLVSVISLLPISAALEDEEMTRRIHCYSVKVGLDSQVTTCN 151

Query: 291 SIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDS 350
           +++  Y KCG + +   VFN+  EK+ VSW +II+G    G   +ALN F +M  +    
Sbjct: 152 ALVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKGRCWDALNAF-RMMIDAGAQ 210

Query: 351 VDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIV 410
            +S+T+ SIL    EL   +   ++HG +   G      + N LI  Y+K G+   A  +
Sbjct: 211 PNSVTISSILPVLVELECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTI 270

Query: 411 FEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGL 470
           F  +   R++VSWN +I  Y +N     A+    +M ETGE P++ T+ ++L AC   G 
Sbjct: 271 FHNLD-RRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGF 329

Query: 471 TNDGLVIFNQMIEENKVKPSQEHY--GCVVDLLARAGCLSDA 510
              G  I    +   ++  + + +    ++D+ A+ GCL  A
Sbjct: 330 LGPGKEIHAMGV---RIGLTSDLFVSNSLIDMYAKCGCLHSA 368



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 105/405 (25%), Positives = 192/405 (47%), Gaps = 26/405 (6%)

Query: 93  IHGLMVKFGLESD----------------------LFEGLKNPYLVSCNAIVAGFINNKL 130
           +HG++ K G ++D                      LF+ +    +VS N I+     N  
Sbjct: 32  VHGVVFKLGFDTDVYVGNTLLMLYGNCGFLNDARRLFDEMPERDVVSWNTIIGLLSVNGD 91

Query: 131 FQQAV-LLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNN 189
           + +A    F     S + PN V++++++    AL    +   IH  ++K+GL   V+  N
Sbjct: 92  YTEARNYYFWMILRSVIKPNLVSVISLLPISAALEDEEMTRRIHCYSVKVGLDSQVTTCN 151

Query: 190 SVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIIC 249
           +++D Y     + A  Q+F E   K+ +SW  ++          DAL  FR M  +    
Sbjct: 152 ALVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKGRCWDALNAFRMMIDAGAQP 211

Query: 250 DTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVF 309
           ++V + +++ V   L   K GK++H   +  G ++++ ++NS+I MY+K G    + ++F
Sbjct: 212 NSVTISSILPVLVELECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIF 271

Query: 310 NQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAAL 369
           + +  +++VSW A+I+ Y  N    EA+   I+M QE  +  +++T  ++L A   L  L
Sbjct: 272 HNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQM-QETGECPNAVTFTNVLPACARLGFL 330

Query: 370 EICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYG 429
               ++H +    G      V N LI  Y+KCG +  A  VF      +D VS+N +I G
Sbjct: 331 GPGKEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFNTS--RKDEVSYNILIIG 388

Query: 430 YGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDG 474
           Y        +L L+ +M   G+ PD  +++ +++AC +      G
Sbjct: 389 YSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQG 433



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 125/253 (49%), Gaps = 12/253 (4%)

Query: 266 DLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIIS 325
           D+ +G ++H  V   G  +++ + N+++ +Y  CG L+ +R +F+++ E+ +VSW  II 
Sbjct: 25  DICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLNDARRLFDEMPERDVVSWNTIIG 84

Query: 326 GYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFP 385
               NG   EA N +  M        + ++++S+L  S  L   E+  ++H  + + G  
Sbjct: 85  LLSVNGDYTEARNYYFWMILRSVIKPNLVSVISLLPISAALEDEEMTRRIHCYSVKVGLD 144

Query: 386 RYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHK 445
              +  N L+ +Y KCG+V   + VF E    ++ VSWN+II G    G    AL  +  
Sbjct: 145 SQVTTCNALVDAYGKCGSVKALWQVFNET-VEKNEVSWNSIINGLACKGRCWDALNAFRM 203

Query: 446 MTETGEVPDSSTYLSILNA-----CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDL 500
           M + G  P+S T  SIL       C  AG    G  +  +M  E  +  +      ++D+
Sbjct: 204 MIDAGAQPNSVTISSILPVLVELECFKAGKEIHGFSM--RMGTETDIFIANS----LIDM 257

Query: 501 LARAGCLSDASGL 513
            A++G  ++AS +
Sbjct: 258 YAKSGHSTEASTI 270


>gi|449445027|ref|XP_004140275.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 833

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 188/618 (30%), Positives = 319/618 (51%), Gaps = 60/618 (9%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + LL  Y   G + +A  LFDE+PE++VVSW+ +I   S+NG + ++   +  M+
Sbjct: 193 DVYVGNTLLMLYGNCGFLNDARRLFDEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMI 252

Query: 64  LSGLL-PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------- 106
           L  ++ PN  +++ +L  +A L++ E+ R IH   VK GL+S +                
Sbjct: 253 LRSVIKPNLVSVISLLPISAALEDEEMTRRIHCYSVKVGLDSQVTTCNALVDAYGKCGSV 312

Query: 107 ------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                 F        VS N+I+ G         A+  F     +G  PN+VT+ +++   
Sbjct: 313 KALWQVFNETVEKNEVSWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVL 372

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
           V L      + IHG ++++G   D+ + NS++DMY+       A  IF  ++ ++++SW 
Sbjct: 373 VELECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWN 432

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+  +       +A++   +M+++    + V   N++   A LG L  GK++HA  V  
Sbjct: 433 AMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEIHAMGVRI 492

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           GL S+L +SNS+I MY+KCG L S+R+VFN  + K  VS+  +I GY +     ++LN F
Sbjct: 493 GLTSDLFVSNSLIDMYAKCGCLHSARNVFNT-SRKDEVSYNILIIGYSETDDCLQSLNLF 551

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            +MR       D ++ V +++A   LAAL+   ++HG+A       +  V N L+  Y+K
Sbjct: 552 SEMRLLGKKP-DVVSFVGVISACANLAALKQGKEVHGVALRNHLYSHLFVSNSLLDFYTK 610

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CG +D+A  +F ++ F +DV SWNT+I GYG+ G  ETA++++  M +     D  +Y++
Sbjct: 611 CGRIDIACRLFNQILF-KDVASWNTMILGYGMIGELETAISMFEAMRDDTVQYDLVSYIA 669

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           +L+AC H GL   G   F++M+ + +++P++ HY C+VDLL RAG + +A+ L  +L   
Sbjct: 670 VLSACSHGGLVERGWQYFSEMLAQ-RLEPTEMHYTCMVDLLGRAGFVEEAAKLIQQLPIA 728

Query: 521 MGPNIWRALLSGCVLH---------------------------------VGRFQDAEALR 547
              NIW ALL  C ++                                  GR+ +A  +R
Sbjct: 729 PDANIWGALLGACRIYGNVELGRRAAEHLFELKPQHCGYYILLSNIYAETGRWDEANKIR 788

Query: 548 SGSQKKGIIKIPGISFLN 565
              + +G  K PG S++ 
Sbjct: 789 ELMKSRGAKKNPGCSWVQ 806



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 121/493 (24%), Positives = 228/493 (46%), Gaps = 31/493 (6%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPE--KNVVSWSIVIHGYSI--NGFHEKSMKAFSHMML 64
           + L+ NY K        +LF++  +  +    W+ +I  +SI  NG  +   + ++ M+ 
Sbjct: 94  ASLILNYAKFQHPGSFCSLFNQTFQNCRTAFLWNTLIRAHSIAWNGTFD-GFETYNRMVR 152

Query: 65  SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------- 105
            G+  +  T   VL   +   ++     +HG++ K G ++D                   
Sbjct: 153 RGVQLDDHTFPFVLKLCSDSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLND 212

Query: 106 ---LFEGLKNPYLVSCNAIVAGF-INNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
              LF+ +    +VS N I+    +N    +     F     S + PN V++++++    
Sbjct: 213 ARRLFDEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNLVSVISLLPISA 272

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
           AL    +   IH  ++K+GL   V+  N+++D Y     + A  Q+F E   K+ +SW  
Sbjct: 273 ALEDEEMTRRIHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEVSWNS 332

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++          DAL  FR M  +    ++V + +++ V   L   K GK++H   +  G
Sbjct: 333 IINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEIHGFSMRMG 392

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
            ++++ ++NS+I MY+K G    + ++F+ +  +++VSW A+I+ Y  N    EA+   I
Sbjct: 393 TETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVI 452

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +M QE  +  +++T  ++L A   L  L    ++H +    G      V N LI  Y+KC
Sbjct: 453 QM-QETGECPNAVTFTNVLPACARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAKC 511

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G +  A  VF      +D VS+N +I GY        +L L+ +M   G+ PD  +++ +
Sbjct: 512 GCLHSARNVFNTSR--KDEVSYNILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGV 569

Query: 462 LNACGHAGLTNDG 474
           ++AC +      G
Sbjct: 570 ISACANLAALKQG 582



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 166/367 (45%), Gaps = 16/367 (4%)

Query: 160 CVALGSRALCELIHGLTIKLGLI-LDVSVNNSVLDMYSCLMDLDAAIQIFRE--MECKDV 216
           C  + S    + +H L I  G +   VS+  S++  Y+      +   +F +    C+  
Sbjct: 64  CSKVQSLLQTKQVHALGILNGFLPRSVSLCASLILNYAKFQHPGSFCSLFNQTFQNCRTA 123

Query: 217 ISW-TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
             W T +    + +    D  + +  M +  +  D      ++ + +   D+ +G ++H 
Sbjct: 124 FLWNTLIRAHSIAWNGTFDGFETYNRMVRRGVQLDDHTFPFVLKLCSDSFDICKGMEVHG 183

Query: 276 QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
            V   G  +++ + N+++ +Y  CG L+ +R +F+++ E+ +VSW  II     NG   E
Sbjct: 184 VVFKLGFDTDVYVGNTLLMLYGNCGFLNDARRLFDEMPERDVVSWNTIIGLLSVNGDYTE 243

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLI 395
           A N +  M        + ++++S+L  S  L   E+  ++H  + + G     +  N L+
Sbjct: 244 ARNYYFWMILRSVIKPNLVSVISLLPISAALEDEEMTRRIHCYSVKVGLDSQVTTCNALV 303

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
            +Y KCG+V   + VF E    ++ VSWN+II G    G    AL  +  M + G  P+S
Sbjct: 304 DAYGKCGSVKALWQVFNET-VEKNEVSWNSIINGLACKGRCWDALNAFRMMIDAGAQPNS 362

Query: 456 STYLSILNA-----CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
            T  SIL       C  AG    G  +  +M  E  +  +      ++D+ A++G  ++A
Sbjct: 363 VTISSILPVLVELECFKAGKEIHGFSM--RMGTETDIFIANS----LIDMYAKSGHSTEA 416

Query: 511 SGLAGKL 517
           S +   L
Sbjct: 417 STIFHNL 423


>gi|224103989|ref|XP_002313273.1| predicted protein [Populus trichocarpa]
 gi|222849681|gb|EEE87228.1| predicted protein [Populus trichocarpa]
          Length = 680

 Score =  288 bits (738), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 183/556 (32%), Positives = 299/556 (53%), Gaps = 27/556 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + LL  Y   G +K+ + +FDE+ E++VVSW+ VI  +S++GF+ +++  F  M 
Sbjct: 41  DVFVGNTLLLFYGNCGGLKDVKRVFDEMLERDVVSWNSVIGVFSVHGFYAEAIHLFCEMN 100

Query: 64  L-SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------- 106
           L SG  PN  ++V VL   AGL++    R IH  +VK GL+S +                
Sbjct: 101 LRSGFRPNMVSIVSVLPVCAGLEDGVTGRQIHCYVVKTGLDSQVTVGNALVDVYGKCGYV 160

Query: 107 ------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                 F+ +     VS NAI+      +  Q A+ +F      G+ PN+VT  +++   
Sbjct: 161 KDSRRVFDEISERNGVSWNAIITSLAYLERNQDALEMFRLMIDGGVKPNSVTFSSMLPVL 220

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
           V L      + IHG +++ GL  D+ V N+++DMY+       A  +F ++  K+++SW 
Sbjct: 221 VELKLFDFGKEIHGFSLRFGLESDIFVANALIDMYAKSGRSLQASNVFNQIGEKNIVSWN 280

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+  F        A+ + R+M+    I ++V   N++   A +G L+ GK++HA+ +  
Sbjct: 281 AMVANFAQNRLELAAVDLVRQMQADGEIPNSVTFTNVLPACARIGFLRPGKEIHARAIRT 340

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           G   +L +SN++  MY+KCG L+ +R VF +I+ +  VS+  +I GY Q     E+L  F
Sbjct: 341 GSSVDLFVSNALTDMYAKCGCLNLARRVF-KISLRDEVSYNILIIGYSQTTNCSESLRLF 399

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
           ++M   K   +D ++ + +++A   LAAL+   ++HG+A       +  + N L+  Y K
Sbjct: 400 LEM-GIKGMKLDVVSYMGVISACANLAALKQGKEVHGLAVRKHLHTHLFIANALLDFYIK 458

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CG +DLA  VF ++   RD  SWN++I GYG+ G    A+ L+  M E G   DS +Y++
Sbjct: 459 CGRIDLAGKVFRQIPS-RDTASWNSMILGYGMLGELTIAINLFEAMKEDGVEYDSVSYIA 517

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           +L+AC H GL  +G   F  M  +N +KP+Q HY C+VDLL RAG + +A  L   L   
Sbjct: 518 VLSACSHGGLVEEGKKYFEHMQVQN-IKPTQMHYACMVDLLGRAGLIEEAVKLIESLPIE 576

Query: 521 MGPNIWRALLSGCVLH 536
              N+W ALL  C +H
Sbjct: 577 PDANVWGALLGACRIH 592



 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 143/522 (27%), Positives = 252/522 (48%), Gaps = 57/522 (10%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+  Y K G +K++  +FDEI E+N VSW+ +I   +    ++ +++ F  M+  G+ PN
Sbjct: 150 LVDVYGKCGYVKDSRRVFDEISERNGVSWNAIITSLAYLERNQDALEMFRLMIDGGVKPN 209

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFE---------------------- 108
           S T   +L     L+  +  + IHG  ++FGLESD+F                       
Sbjct: 210 SVTFSSMLPVLVELKLFDFGKEIHGFSLRFGLESDIFVANALIDMYAKSGRSLQASNVFN 269

Query: 109 --GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
             G KN  +VS NA+VA F  N+L   AV L    +  G +PN+VT   V+  C  +G  
Sbjct: 270 QIGEKN--IVSWNAMVANFAQNRLELAAVDLVRQMQADGEIPNSVTFTNVLPACARIGFL 327

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
              + IH   I+ G  +D+ V+N++ DMY+    L+ A ++F+ +  +D +S+  ++  +
Sbjct: 328 RPGKEIHARAIRTGSSVDLFVSNALTDMYAKCGCLNLARRVFK-ISLRDEVSYNILIIGY 386

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
                  ++L++F EM    +  D V+ + +IS  A L  LK+GK++H   V   L + L
Sbjct: 387 SQTTNCSESLRLFLEMGIKGMKLDVVSYMGVISACANLAALKQGKEVHGLAVRKHLHTHL 446

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            ++N+++  Y KCG +D +  VF QI  +   SW ++I GY   G    A+N F  M+++
Sbjct: 447 FIANALLDFYIKCGRIDLAGKVFRQIPSRDTASWNSMILGYGMLGELTIAINLFEAMKED 506

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG--FPRYRSVQN---------CLI 395
             +  DS++ +++L+A             HG   E G  +  +  VQN         C++
Sbjct: 507 GVE-YDSVSYIAVLSACS-----------HGGLVEEGKKYFEHMQVQNIKPTQMHYACMV 554

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
               + G ++ A  + E +    D   W  ++    ++G+ E A      + +    P  
Sbjct: 555 DLLGRAGLIEEAVKLIESLPIEPDANVWGALLGACRIHGYIELAHWAAEHLFKLK--PQH 612

Query: 456 STYLSIL-NACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGC 496
           S Y S+L N    AG  ++     NQ+ +  K + ++++ GC
Sbjct: 613 SGYYSVLSNMYAEAGKWDEA----NQVRKLMKSRGAKKNPGC 650



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 121/432 (28%), Positives = 215/432 (49%), Gaps = 26/432 (6%)

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF------------EGLKNP 113
           G+  +  T   VL A A   +++  R IHG++ K G +SD+F             GLK+ 
Sbjct: 2   GVRLDDHTFPFVLKACADSLSVQKGREIHGVVFKLGFDSDVFVGNTLLLFYGNCGGLKDV 61

Query: 114 Y----------LVSCNAIVAGFINNKLFQQAVLLF-NFFRGSGLVPNAVTMLTVIRGCVA 162
                      +VS N+++  F  +  + +A+ LF      SG  PN V++++V+  C  
Sbjct: 62  KRVFDEMLERDVVSWNSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVCAG 121

Query: 163 LGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
           L        IH   +K GL   V+V N+++D+Y     +  + ++F E+  ++ +SW  +
Sbjct: 122 LEDGVTGRQIHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEISERNGVSWNAI 181

Query: 223 MGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL 282
           +      E   DAL++FR M    +  ++V   +++ V   L     GK++H   +  GL
Sbjct: 182 ITSLAYLERNQDALEMFRLMIDGGVKPNSVTFSSMLPVLVELKLFDFGKEIHGFSLRFGL 241

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
           +S++ ++N++I MY+K G    + +VFNQI EK++VSW A+++ + QN     A++  ++
Sbjct: 242 ESDIFVANALIDMYAKSGRSLQASNVFNQIGEKNIVSWNAMVANFAQNRLELAAVD-LVR 300

Query: 343 MRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
             Q   +  +S+T  ++L A   +  L    ++H  A   G      V N L   Y+KCG
Sbjct: 301 QMQADGEIPNSVTFTNVLPACARIGFLRPGKEIHARAIRTGSSVDLFVSNALTDMYAKCG 360

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
            ++LA  VF+    LRD VS+N +I GY    +   +L L+ +M   G   D  +Y+ ++
Sbjct: 361 CLNLARRVFKIS--LRDEVSYNILIIGYSQTTNCSESLRLFLEMGIKGMKLDVVSYMGVI 418

Query: 463 NACGHAGLTNDG 474
           +AC +      G
Sbjct: 419 SACANLAALKQG 430


>gi|356557931|ref|XP_003547263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Glycine max]
          Length = 764

 Score =  288 bits (736), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 179/553 (32%), Positives = 278/553 (50%), Gaps = 27/553 (4%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D Y +S L++ Y K G    A  +FD +PE+NVV W+ +I  YS  G   ++   F  M
Sbjct: 102 LDAYIASSLINFYAKFGFADVARKVFDFMPERNVVPWTSIIGCYSRTGRVPEAFSLFDEM 161

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
              G+ P+S TM+ +L    G+  L   + +HG  + +G  SD                 
Sbjct: 162 RRQGIQPSSVTMLSLLF---GVSELAHVQCLHGSAILYGFMSDINLSNSMLSMYGKCRNI 218

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                LF+ +    LVS N++V+ +       + +LL    R  G  P+  T  +V+   
Sbjct: 219 EYSRKLFDYMDQRDLVSWNSLVSAYAQIGYICEVLLLLKTMRIQGFEPDPQTFGSVLSVA 278

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
            + G   L   +HG  ++    LD  V  S++ MY    ++D A ++F     KDV+ WT
Sbjct: 279 ASRGELKLGRCLHGQILRTCFDLDAHVETSLIVMYLKGGNIDIAFRMFERSLDKDVVLWT 338

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+   V    A  AL +FR+M K  +   T  + ++I+  A LG    G  +H  +   
Sbjct: 339 AMISGLVQNGSADKALAVFRQMLKFGVKSSTATMASVITACAQLGSYNLGTSVHGYMFRH 398

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
            L  ++   NS++ M++KCG LD S  VF+++ +++LVSW A+I+GY QNG   +AL  F
Sbjct: 399 ELPMDIATQNSLVTMHAKCGHLDQSSIVFDKMNKRNLVSWNAMITGYAQNGYVCKALFLF 458

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            +MR +   + DSIT+VS+L        L +   +H      G      V   L+  Y K
Sbjct: 459 NEMRSDH-QTPDSITIVSLLQGCASTGQLHLGKWIHSFVIRNGLRPCILVDTSLVDMYCK 517

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CG++D+A   F +M    D+VSW+ II GYG +G GETAL  Y K  E+G  P+   +LS
Sbjct: 518 CGDLDIAQRCFNQMPS-HDLVSWSAIIVGYGYHGKGETALRFYSKFLESGMKPNHVIFLS 576

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           +L++C H GL   GL I+  M  +  + P+ EH+ CVVDLL+RAG + +A  L  K    
Sbjct: 577 VLSSCSHNGLVEQGLNIYESMTRDFGIAPNLEHHACVVDLLSRAGRVEEAYNLYKKKFSD 636

Query: 521 MGPNIWRALLSGC 533
              ++   +L  C
Sbjct: 637 PVLDVLGIILDAC 649



 Score =  215 bits (548), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 157/578 (27%), Positives = 287/578 (49%), Gaps = 54/578 (9%)

Query: 38  SWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLM 97
           S++ +I+ +S  G H + +  ++ M+ + +  +++T   +L A + L    L  S+H  +
Sbjct: 36  SFNAIINHHSSQGAHRQVLATYASMLKTHVPSDAYTFPSLLKACSSLNLFSLGLSLHQRI 95

Query: 98  VKFGLESD----------------------LFEGLKNPYLVSCNAIVAGFINNKLFQQAV 135
           +  GL  D                      +F+ +    +V   +I+  +       +A 
Sbjct: 96  LVSGLSLDAYIASSLINFYAKFGFADVARKVFDFMPERNVVPWTSIIGCYSRTGRVPEAF 155

Query: 136 LLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMY 195
            LF+  R  G+ P++VTML+++ G   L   A  + +HG  I  G + D++++NS+L MY
Sbjct: 156 SLFDEMRRQGIQPSSVTMLSLLFGVSEL---AHVQCLHGSAILYGFMSDINLSNSMLSMY 212

Query: 196 SCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALL 255
               +++ + ++F  M+ +D++SW  ++  +    Y  + L + + MR      D     
Sbjct: 213 GKCRNIEYSRKLFDYMDQRDLVSWNSLVSAYAQIGYICEVLLLLKTMRIQGFEPDPQTFG 272

Query: 256 NLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK 315
           +++SV A  G+LK G+ LH Q++      +  +  S+I MY K G++D +  +F +  +K
Sbjct: 273 SVLSVAASRGELKLGRCLHGQILRTCFDLDAHVETSLIVMYLKGGNIDIAFRMFERSLDK 332

Query: 316 SLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQL 375
            +V WTA+ISG VQNG A +AL  F +M +    S  + T+ S++TA  +L +  +   +
Sbjct: 333 DVVLWTAMISGLVQNGSADKALAVFRQMLKFGVKS-STATMASVITACAQLGSYNLGTSV 391

Query: 376 HGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGH 435
           HG  F    P   + QN L++ ++KCG++D + IVF++M   R++VSWN +I GY  NG+
Sbjct: 392 HGYMFRHELPMDIATQNSLVTMHAKCGHLDQSSIVFDKMN-KRNLVSWNAMITGYAQNGY 450

Query: 436 GETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYG 495
              AL L+++M    + PDS T +S+L  C   G  + G  I + +I  N ++P      
Sbjct: 451 VCKALFLFNEMRSDHQTPDSITIVSLLQGCASTGQLHLGKWIHSFVI-RNGLRPCILVDT 509

Query: 496 CVVDLLARAGCLSDASGLAGKLLEGMGPN---IWRALLSGCVLHVGRFQDA-----EALR 547
            +VD+  + G L     +A +    M  +    W A++ G   H G+ + A     + L 
Sbjct: 510 SLVDMYCKCGDLD----IAQRCFNQMPSHDLVSWSAIIVGYGYH-GKGETALRFYSKFLE 564

Query: 548 SGSQKKGIIKIP-------------GISFLNSTSRDFG 572
           SG +   +I +              G++   S +RDFG
Sbjct: 565 SGMKPNHVIFLSVLSSCSHNGLVEQGLNIYESMTRDFG 602


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  288 bits (736), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 182/616 (29%), Positives = 305/616 (49%), Gaps = 60/616 (9%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+  Y KSG I +A  +FD + E+++ SW+++I G + +G  +++   F  M  +G LPN
Sbjct: 361 LVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPN 420

Query: 71  SFTMVGVLVAAA--GLQNLELARSIHGLMVKFGLESDL---------------------- 106
             T + +L A+A      LE  + +H    + G  SDL                      
Sbjct: 421 LTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLV 480

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           F+G+ +  ++S NA++ G   N    +A  +F   +  GLVP++ T L+++    +  + 
Sbjct: 481 FDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDAL 540

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
                +H   ++ GLI D  V ++ + MY     +D A  +F ++  + V +W  M+G  
Sbjct: 541 EWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGA 600

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
                  +AL +F +M++   I D    +N++S N     L+  K++H+     GL  +L
Sbjct: 601 AQQRCGREALSLFLQMQREGFIPDATTFINILSANVDEEALEWVKEVHSHATDAGL-VDL 659

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
           R+ N+++  YSKCG++  ++ VF+ + E+++ +WT +I G  Q+GC  +A + F++M +E
Sbjct: 660 RVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLRE 719

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
                D+ T VSIL+A     ALE   ++H  A  AG      V N L+  Y+KCG++D 
Sbjct: 720 GI-VPDATTYVSILSACASTGALEWVKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSIDD 778

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           A  VF++M   RDV SW  +I G   +G G  AL  + KM   G  P+  +Y+++L AC 
Sbjct: 779 ARSVFDDM-VERDVFSWTVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTACS 837

Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIW 526
           HAGL ++G   F  M ++  ++P+ EHY C+VDLL RAG L +A      +        W
Sbjct: 838 HAGLVDEGRRQFLSMTQDYGIEPTMEHYTCMVDLLGRAGLLEEAELFILNMPIEPDDAPW 897

Query: 527 RALLSGCVLH---------------------------------VGRFQDAEALRSGSQKK 553
            ALL  CV +                                  G+++    +RS  Q+K
Sbjct: 898 GALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGKWEQKLLVRSMMQRK 957

Query: 554 GIIKIPGISFLNSTSR 569
           GI K PG S++   +R
Sbjct: 958 GIRKEPGRSWIEVDNR 973



 Score =  258 bits (658), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 164/553 (29%), Positives = 285/553 (51%), Gaps = 31/553 (5%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + L++ Y K G I++A+ +FD++ E+NV+SW+++I G +  G  +++   F  M   G +
Sbjct: 258 TALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFI 317

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------------- 106
           PNS+T V +L A A    LE  + +H   V  GL  DL                      
Sbjct: 318 PNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVV 377

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           F+G+    + S   ++ G   +   Q+A  LF   + +G +PN  T L+++       + 
Sbjct: 378 FDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTS 437

Query: 167 AL--CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
           AL   +++H    + G I D+ + N+++ MY+    +D A  +F  M  +DVISW  MMG
Sbjct: 438 ALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMG 497

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
                    +A  +F +M++  ++ D+   L+L++ +     L+   ++H   V  GL S
Sbjct: 498 GLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLIS 557

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           + R+ ++ I MY +CG +D +R +F++++ + + +W A+I G  Q  C REAL+ F++M+
Sbjct: 558 DFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQ 617

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
           +E     D+ T ++IL+A+ +  ALE   ++H  A +AG    R V N L+ +YSKCGNV
Sbjct: 618 REGFIP-DATTFINILSANVDEEALEWVKEVHSHATDAGLVDLR-VGNALVHTYSKCGNV 675

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
             A  VF++M   R+V +W  +I G   +G G  A + + +M   G VPD++TY+SIL+A
Sbjct: 676 KYAKQVFDDM-VERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSA 734

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYG-CVVDLLARAGCLSDASGLAGKLLEGMGP 523
           C   G       + N  +    V  S    G  +V + A+ G + DA  +   ++E    
Sbjct: 735 CASTGALEWVKEVHNHAVSAGLV--SDLRVGNALVHMYAKCGSIDDARSVFDDMVE-RDV 791

Query: 524 NIWRALLSGCVLH 536
             W  ++ G   H
Sbjct: 792 FSWTVMIGGLAQH 804



 Score =  247 bits (631), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 162/589 (27%), Positives = 291/589 (49%), Gaps = 68/589 (11%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y ++KLL  Y + G+++ A  +FD++ +KN+  W+ +I GY+  G  E +M+ +  M   
Sbjct: 154 YVANKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQE 213

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-------------------- 105
              PN  T + +L A     NL+  + IH  +++ G +SD                    
Sbjct: 214 CGQPNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDA 273

Query: 106 --LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
             +F+ +    ++S   ++ G  +    Q+A  LF   +  G +PN+ T ++++    + 
Sbjct: 274 QLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASA 333

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
           G+    + +H   +  GL LD+ V N+++ MY+    +D A  +F  M  +D+ SWT M+
Sbjct: 334 GALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMI 393

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGD--LKRGKQLHAQVVLGG 281
           G         +A  +F +M+++  + +    L++++ +AI     L+  K +H      G
Sbjct: 394 GGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAG 453

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
             S+LR+ N++I MY+KCG +D +R VF+ + ++ ++SW A++ G  QNGC  EA   F+
Sbjct: 454 FISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFL 513

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +M+QE     DS T +S+L   G   ALE   ++H  A E G      V +  I  Y +C
Sbjct: 514 QMQQEGL-VPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRC 572

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G++D A ++F+++  +R V +WN +I G      G  AL+L+ +M   G +PD++T+++I
Sbjct: 573 GSIDDARLLFDKLS-VRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINI 631

Query: 462 LNAC-----------GHAGLTNDGLV-----------------------IFNQMIEENKV 487
           L+A             H+  T+ GLV                       +F+ M+E N  
Sbjct: 632 LSANVDEEALEWVKEVHSHATDAGLVDLRVGNALVHTYSKCGNVKYAKQVFDDMVERNVT 691

Query: 488 KPSQEHYGCVVDLLARAGCLSDA-SGLAGKLLEGMGPN--IWRALLSGC 533
                 +  ++  LA+ GC  DA S     L EG+ P+   + ++LS C
Sbjct: 692 T-----WTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSAC 735



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 159/531 (29%), Positives = 272/531 (51%), Gaps = 44/531 (8%)

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL------------------- 106
           G+  +SF+ V +L      +++ LA+ +H  ++K G+E +L                   
Sbjct: 113 GIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCA 172

Query: 107 ---FEGL--KNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
              F+ L  KN Y+ +   ++ G+      + A+ +++  R     PN +T L++++ C 
Sbjct: 173 RQVFDKLLKKNIYIWT--TMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACC 230

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
              +    + IH   I+ G   DV V  ++++MY     ++ A  IF +M  ++VISWT 
Sbjct: 231 CPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTV 290

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+G    +    +A  +F +M++   I ++   +++++ NA  G L+  K++H+  V  G
Sbjct: 291 MIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAG 350

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           L  +LR+ N+++ MY+K G +D +R VF+ +TE+ + SWT +I G  Q+G  +EA + F+
Sbjct: 351 LALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFL 410

Query: 342 KMRQEKTDSVDSITLVSILTAS--GELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           +M Q      +  T +SIL AS     +ALE    +H  A EAGF     + N LI  Y+
Sbjct: 411 QM-QRNGCLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYA 469

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           KCG++D A +VF+ M   RDV+SWN ++ G   NG G  A  ++ +M + G VPDS+TYL
Sbjct: 470 KCGSIDDARLVFDGM-CDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYL 528

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKP---SQEHYGCV-VDLLARAGCLSDASGLAG 515
           S+LN  G    + D L   N+ + ++ V+    S    G   + +  R G + DA  L  
Sbjct: 529 SLLNTHG----STDALEWVNE-VHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFD 583

Query: 516 KLLEGMGPNIWRALLSGCVLH-VGRFQDAEALRSGSQKKGIIKIPGISFLN 565
           K L       W A++ G      GR  +A +L    Q++G I     +F+N
Sbjct: 584 K-LSVRHVTTWNAMIGGAAQQRCGR--EALSLFLQMQREGFIP-DATTFIN 630



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 125/441 (28%), Positives = 231/441 (52%), Gaps = 18/441 (4%)

Query: 104 SDLFEGLKNPYL----VSCNAIVAGFI----NNKLFQQAVLLFNFFRGSGLVPNAVTMLT 155
           S  F+  K+ YL    V  NA V G      N    + AV +       G+  ++ + + 
Sbjct: 64  SGCFKSEKHKYLPSVLVCANASVDGAAEQTHNVITAKDAVAMLKIRVQQGIAIDSFSYVN 123

Query: 156 VIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKD 215
           +++ C+      L + +H   IK G+  ++ V N +L +Y     L  A Q+F ++  K+
Sbjct: 124 ILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVFDKLLKKN 183

Query: 216 VISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
           +  WT M+G + ++ +A DA++++ +MR+     + +  L+++       +LK GK++HA
Sbjct: 184 IYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLKWGKKIHA 243

Query: 276 QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
            ++  G QS++R+  +++ MY KCG ++ ++ +F+++ E++++SWT +I G    G  +E
Sbjct: 244 HIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQE 303

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLI 395
           A + F++M++E     +S T VSIL A+    ALE   ++H  A  AG      V N L+
Sbjct: 304 AFHLFLQMQREGFIP-NSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALV 362

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
             Y+K G++D A +VF+ M   RD+ SW  +I G   +G G+ A +L+ +M   G +P+ 
Sbjct: 363 HMYAKSGSIDDARVVFDGMT-ERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNL 421

Query: 456 STYLSILNACGHAGLTN-DGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLA 514
           +TYLSILNA   A  +  + + + ++  EE            ++ + A+ G + DA    
Sbjct: 422 TTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDAR--- 478

Query: 515 GKLLEGMGPN---IWRALLSG 532
             + +GM       W A++ G
Sbjct: 479 -LVFDGMCDRDVISWNAMMGG 498



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/257 (22%), Positives = 107/257 (41%), Gaps = 36/257 (14%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D    + L+  Y K G +K A+ +FD++ E+NV +W+++I G + +G    +   F  M
Sbjct: 657 VDLRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFSHFLQM 716

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------- 106
           +  G++P++ T V +L A A    LE  + +H   V  GL SDL                
Sbjct: 717 LREGIVPDATTYVSILSACASTGALEWVKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSI 776

Query: 107 ------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                 F+ +    + S   ++ G   +    +A+  F   +  G  PN  + + V+  C
Sbjct: 777 DDARSVFDDMVERDVFSWTVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTAC 836

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC------- 213
              G      +  G    L +  D  +  + ++ Y+C++DL     +  E E        
Sbjct: 837 SHAGL-----VDEGRRQFLSMTQDYGIEPT-MEHYTCMVDLLGRAGLLEEAELFILNMPI 890

Query: 214 -KDVISWTRMMGLFVDF 229
             D   W  ++G  V +
Sbjct: 891 EPDDAPWGALLGACVTY 907


>gi|449440387|ref|XP_004137966.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 180/611 (29%), Positives = 307/611 (50%), Gaps = 59/611 (9%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           +LS Y K G +KEA N+FD +P KNVVSW+ +I GYS  G  + ++  +  M+ SG +P+
Sbjct: 139 ILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPD 198

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------------FE 108
            FT   ++ + +GL + +LAR +H  ++K    +DL                      F 
Sbjct: 199 HFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFS 258

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLF-NFFRGSGLVPNAVTMLTVIRGCVALGSRA 167
            +    L+S  +++AGF       +A+  F      S   PN     +    C  L    
Sbjct: 259 RIIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPD 318

Query: 168 LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
               IHGL IK GL  D+    S+ DMY+    L++A  +F  +E  D+++W  ++  F 
Sbjct: 319 CGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFA 378

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
               A ++   F +MR + ++ + V +L+L+   +    L  G Q+H+ +V  G   ++ 
Sbjct: 379 SVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLDIP 438

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKS-LVSWTAIISGYVQNGCAREALNQFIKMRQE 346
           + NS+++MYSKC +L+ +  VF  I  K+ +VSW  +++  +Q   A E L +  K+   
Sbjct: 439 VCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQNQAGEVL-RLTKLMFA 497

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
                D +TL ++L +SG++A+ E+  Q+H    ++G     SV N LI+ Y+KCG+++ 
Sbjct: 498 SRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKCGSLEC 557

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           A  +F+ +G   D++SW+++I GY   G G+ A  L+  M   G  P+  T++ IL AC 
Sbjct: 558 ARKMFDSIGN-PDIISWSSLIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGILTACS 616

Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIW 526
           H G+  +GL ++  M E+ ++ P++EH  C+VDLLARAGCL  A     ++       +W
Sbjct: 617 HIGMVEEGLKLYRTMQEDYRISPTKEHCSCMVDLLARAGCLDVAEDFIKQMPFVPDVVVW 676

Query: 527 RALLSGCVLH---------------------------------VGRFQDAEALRSGSQKK 553
           + LL+ C +H                                  G ++D   LRS  ++ 
Sbjct: 677 KTLLAACKVHGNLEVGKRAAENVLKIDPSNSAAVVMLCNIHASSGHWKDFARLRSSMRRM 736

Query: 554 GIIKIPGISFL 564
            + K+PG S++
Sbjct: 737 DVGKVPGQSWI 747



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 98/355 (27%), Positives = 175/355 (49%), Gaps = 2/355 (0%)

Query: 130 LFQQAVLLFNFFRGSGLVP-NAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVN 188
           L ++A+  F+ F+     P  +VT   +I  C +L S      IH   +      D+ + 
Sbjct: 77  LHREALKAFDIFQKCSSSPLKSVTYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQ 136

Query: 189 NSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRII 248
           N +L MY     L  A  +F  M  K+V+SWT M+  +  +    +A+ ++ +M +S  I
Sbjct: 137 NHILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHI 196

Query: 249 CDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSV 308
            D     +++   + L D K  +QLHA V+     ++L   N++I+MY+K   +  + +V
Sbjct: 197 PDHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINV 256

Query: 309 FNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAA 368
           F++I  K L+SW ++I+G+ Q G   EAL  F +M  +     +     S  +A  +L  
Sbjct: 257 FSRIIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLE 316

Query: 369 LEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIY 428
            +   Q+HG+  + G          L   Y+KCG ++ A  VF  +    D+V+WN II 
Sbjct: 317 PDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIE-KPDLVAWNAIIA 375

Query: 429 GYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIE 483
           G+    + + + + + +M  TG VP+  T LS+L AC    + N G+ + + +++
Sbjct: 376 GFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVK 430



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 90/398 (22%), Positives = 182/398 (45%), Gaps = 46/398 (11%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +    L   Y K G ++ A  +F  I + ++V+W+ +I G++     ++S   FS M 
Sbjct: 335 DLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMR 394

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------- 106
            +GL+PN  T++ +L A +    L     +H  +VK G   D+                 
Sbjct: 395 HTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLN 454

Query: 107 -----FEGLKNPY-LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                FE + N   +VS N ++   +      + + L      S + P+ VT+  V+   
Sbjct: 455 DALQVFEDIGNKADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSS 514

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             + S  +   IH   +K GL LD+SV+N++++MY+    L+ A ++F  +   D+ISW+
Sbjct: 515 GQIASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKCGSLECARKMFDSIGNPDIISWS 574

Query: 221 RMMGLFVDFEYAG---DALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
               L V +  AG   +A ++FR MR   +  + +  + +++  + +G ++ G +L+   
Sbjct: 575 ---SLIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGILTACSHIGMVEEGLKLYRT- 630

Query: 278 VLGGLQSELRLSNS------IIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISGYVQN 330
               +Q + R+S +      ++ + ++ G LD +     Q+     +V W  +++    +
Sbjct: 631 ----MQEDYRISPTKEHCSCMVDLLARAGCLDVAEDFIKQMPFVPDVVVWKTLLAACKVH 686

Query: 331 G---CAREALNQFIKMRQEKTDSVDSITLVSILTASGE 365
           G     + A    +K+  + ++S   + L +I  +SG 
Sbjct: 687 GNLEVGKRAAENVLKI--DPSNSAAVVMLCNIHASSGH 722


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 174/550 (31%), Positives = 297/550 (54%), Gaps = 24/550 (4%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           +KL+S + + G + EA  +F+ I  K  V +  ++ G++     +K+++ F  M    + 
Sbjct: 73  TKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVE 132

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY------------ 114
           P  +    +L        L + + IHGL+VK G   DLF   GL+N Y            
Sbjct: 133 PVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKV 192

Query: 115 --------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
                   LVS N IVAG+  N + + A+ +        L P+ +T+++V+    AL   
Sbjct: 193 FDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLI 252

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
           ++ + IHG  ++ G    V+++ +++DMY+    L+ A Q+F  M  ++V+SW  M+  +
Sbjct: 253 SVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAY 312

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
           V  E   +A+ IF++M    +    V+++  +   A LGDL+RG+ +H   V  GL   +
Sbjct: 313 VQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNV 372

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            + NS+I+MY KC ++D++ S+F ++  ++LVSW A+I G+ QNG   +ALN F +MR  
Sbjct: 373 SVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRS- 431

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
           +T   D+ T VS++TA  EL+       +HG+   +   +   V   L+  Y+KCG + +
Sbjct: 432 RTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMI 491

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           A ++F+ M   R V +WN +I GYG +G G+ AL L+ +M +    P+  T+LS+++AC 
Sbjct: 492 ARLIFDMMS-ERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACS 550

Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIW 526
           H+GL   GL  F  M E   ++ S +HYG +VDLL RAG L++A     ++      N++
Sbjct: 551 HSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVY 610

Query: 527 RALLSGCVLH 536
            A+L  C +H
Sbjct: 611 GAMLGACQIH 620



 Score =  188 bits (477), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 108/394 (27%), Positives = 206/394 (52%), Gaps = 23/394 (5%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  + L + Y K  ++ EA  +FD +PE+++VSW+ ++ GYS NG    +++    M
Sbjct: 168 LDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSM 227

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES------------------ 104
               L P+  T+V VL A + L+ + + + IHG  ++ G +S                  
Sbjct: 228 CEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSL 287

Query: 105 ----DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                LF+G+    +VS N+++  ++ N+  ++A+L+F      G+ P  V+++  +  C
Sbjct: 288 ETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHAC 347

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             LG       IH L+++LGL  +VSV NS++ MY    ++D A  +F +++ + ++SW 
Sbjct: 348 ADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWN 407

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+  F       DAL  F +MR   +  DT   +++I+  A L      K +H  V+  
Sbjct: 408 AMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRS 467

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
            L   + ++ +++ MY+KCG +  +R +F+ ++E+ + +W A+I GY  +G  + AL  F
Sbjct: 468 CLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELF 527

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQ 374
            +M Q+ T   + +T +S+++A      +E  L+
Sbjct: 528 EEM-QKGTIKPNGVTFLSVISACSHSGLVEAGLK 560


>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Glycine max]
          Length = 882

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 169/549 (30%), Positives = 287/549 (52%), Gaps = 28/549 (5%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           LLS + + G + +A  +F  + ++N+ SW++++ GY+  G  ++++  +  M+  G+ P+
Sbjct: 147 LLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVKPD 206

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------------FE 108
            +T   VL    G+ NL   R IH  ++++G ESD+                      F+
Sbjct: 207 VYTFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLVFD 266

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            + N   +S NA+++G+  N +  + + LF       + P+ +TM +VI  C  LG   L
Sbjct: 267 KMPNRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDDRL 326

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
              IHG  ++     D S++NS++ MYS +  ++ A  +F   EC+D++SWT M+  + +
Sbjct: 327 GRQIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYEN 386

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
                 AL+ ++ M    I+ D + +  ++S  + L +L  G  LH      GL S   +
Sbjct: 387 CLMPQKALETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLVSYSIV 446

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM-RQEK 347
           +NS+I MY+KC  +D +  +F+   EK++VSWT+II G   N    EAL  F +M R+ K
Sbjct: 447 ANSLIDMYAKCKCIDKALEIFHSTLEKNIVSWTSIILGLRINNRCFEALFFFREMIRRLK 506

Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
            +SV   TLV +L+A   + AL    ++H  A   G      + N ++  Y +CG ++ A
Sbjct: 507 PNSV---TLVCVLSACARIGALTCGKEIHAHALRTGVSFDGFMPNAILDMYVRCGRMEYA 563

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
           +  F  +    +V SWN ++ GY   G G  A  L+ +M E+   P+  T++SIL AC  
Sbjct: 564 WKQFFSVD--HEVTSWNILLTGYAERGKGAHATELFQRMVESNVSPNEVTFISILCACSR 621

Query: 468 AGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWR 527
           +G+  +GL  FN M  +  + P+ +HY CVVDLL R+G L +A     K+     P +W 
Sbjct: 622 SGMVAEGLEYFNSMKYKYSIMPNLKHYACVVDLLGRSGKLEEAYEFIQKMPMKPDPAVWG 681

Query: 528 ALLSGCVLH 536
           ALL+ C +H
Sbjct: 682 ALLNSCRIH 690



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 119/455 (26%), Positives = 222/455 (48%), Gaps = 36/455 (7%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L++ Y K G +  A  +FD++P ++ +SW+ +I GY  NG   + ++ F  M+   + P+
Sbjct: 248 LITMYVKCGDVNTARLVFDKMPNRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPD 307

Query: 71  SFTMVGVLVAAAGLQNLELARSIHG--LMVKFGLESDLFEGLKNPY-------------- 114
             TM  V+ A   L +  L R IHG  L  +FG +  +   L   Y              
Sbjct: 308 LMTMTSVITACELLGDDRLGRQIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFS 367

Query: 115 ------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
                 LVS  A+++G+ N  + Q+A+  +      G++P+ +T+  V+  C  L +  +
Sbjct: 368 RTECRDLVSWTAMISGYENCLMPQKALETYKMMEAEGIMPDEITIAIVLSACSCLCNLDM 427

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM-MGLFV 227
              +H +  + GL+    V NS++DMY+    +D A++IF     K+++SWT + +GL +
Sbjct: 428 GMNLHEVAKQKGLVSYSIVANSLIDMYAKCKCIDKALEIFHSTLEKNIVSWTSIILGLRI 487

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
           +     +AL  FREM + R+  ++V L+ ++S  A +G L  GK++HA  +  G+  +  
Sbjct: 488 N-NRCFEALFFFREMIR-RLKPNSVTLVCVLSACARIGALTCGKEIHAHALRTGVSFDGF 545

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
           + N+I+ MY +CG ++ +   F  + +  + SW  +++GY + G    A   F +M  E 
Sbjct: 546 MPNAILDMYVRCGRMEYAWKQFFSV-DHEVTSWNILLTGYAERGKGAHATELFQRM-VES 603

Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN-----CLISSYSKCG 402
             S + +T +SIL A      +   L+     F +   +Y  + N     C++    + G
Sbjct: 604 NVSPNEVTFISILCACSRSGMVAEGLEY----FNSMKYKYSIMPNLKHYACVVDLLGRSG 659

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGE 437
            ++ AY   ++M    D   W  ++    ++ H E
Sbjct: 660 KLEEAYEFIQKMPMKPDPAVWGALLNSCRIHHHVE 694



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 138/298 (46%), Gaps = 4/298 (1%)

Query: 235 ALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIA 294
           A+     M + RI  +  A + LI +       K G ++++ V +      L+L N++++
Sbjct: 90  AMSYLDSMHELRIPVEDDAYVALIRLCEWKRARKEGSRVYSYVSISMSHLSLQLGNALLS 149

Query: 295 MYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSI 354
           M+ + G+L  +  VF ++ +++L SW  ++ GY + G   EAL+ + +M        D  
Sbjct: 150 MFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVKP-DVY 208

Query: 355 TLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM 414
           T   +L   G +  L    ++H      GF     V N LI+ Y KCG+V+ A +VF++M
Sbjct: 209 TFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLVFDKM 268

Query: 415 GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDG 474
              RD +SWN +I GY  NG     L L+  M +    PD  T  S++ AC   G    G
Sbjct: 269 PN-RDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDDRLG 327

Query: 475 LVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSG 532
             I   ++     +    H   ++ + +  G + +A  +  +  E      W A++SG
Sbjct: 328 RQIHGYVLRTEFGRDPSIH-NSLIPMYSSVGLIEEAETVFSR-TECRDLVSWTAMISG 383



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 93/414 (22%), Positives = 187/414 (45%), Gaps = 42/414 (10%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           DP   + L+  Y   G I+EAE +F     +++VSW+ +I GY      +K+++ +  M 
Sbjct: 342 DPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYENCLMPQKALETYKMME 401

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES------------------- 104
             G++P+  T+  VL A + L NL++  ++H +  + GL S                   
Sbjct: 402 AEGIMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLVSYSIVANSLIDMYAKCKCID 461

Query: 105 ---DLFEGLKNPYLVSCNAIVAGF-INNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
              ++F       +VS  +I+ G  INN+ F+         R   L PN+VT++ V+  C
Sbjct: 462 KALEIFHSTLEKNIVSWTSIILGLRINNRCFEALFFFREMIR--RLKPNSVTLVCVLSAC 519

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             +G+    + IH   ++ G+  D  + N++LDMY     ++ A + F  ++  +V SW 
Sbjct: 520 ARIGALTCGKEIHAHALRTGVSFDGFMPNAILDMYVRCGRMEYAWKQFFSVD-HEVTSWN 578

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG-KQLHAQVVL 279
            ++  + +      A ++F+ M +S +  + V  ++++   +  G +  G +  ++    
Sbjct: 579 ILLTGYAERGKGAHATELFQRMVESNVSPNEVTFISILCACSRSGMVAEGLEYFNSMKYK 638

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVS-WTAI-----ISGYVQNGCA 333
             +   L+    ++ +  + G L+ +     ++  K   + W A+     I  +V+ G  
Sbjct: 639 YSIMPNLKHYACVVDLLGRSGKLEEAYEFIQKMPMKPDPAVWGALLNSCRIHHHVELG-E 697

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASG----ELAALEICLQLHGIAFEAG 383
             A N F    Q+ T SV    L+S L A      ++A +   ++ +G+  + G
Sbjct: 698 LAAENIF----QDDTTSVGYYILLSNLYADNGKWDKVAEVRKMMRQNGLIVDPG 747


>gi|449518693|ref|XP_004166371.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 180/611 (29%), Positives = 307/611 (50%), Gaps = 59/611 (9%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           +LS Y K G +KEA N+FD +P KNVVSW+ +I GYS  G  + ++  +  M+ SG +P+
Sbjct: 139 ILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPD 198

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------------FE 108
            FT   ++ + +GL + +LAR +H  ++K    +DL                      F 
Sbjct: 199 HFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFS 258

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLF-NFFRGSGLVPNAVTMLTVIRGCVALGSRA 167
            +    L+S  +++AGF       +A+  F      S   PN     +    C  L    
Sbjct: 259 RIIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPD 318

Query: 168 LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
               IHGL IK GL  D+    S+ DMY+    L++A  +F  +E  D+++W  ++  F 
Sbjct: 319 CGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFA 378

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
               A ++   F +MR + ++ + V +L+L+   +    L  G Q+H+ +V  G   ++ 
Sbjct: 379 SVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLDIP 438

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKS-LVSWTAIISGYVQNGCAREALNQFIKMRQE 346
           + NS+++MYSKC +L+ +  VF  I  K+ +VSW  +++  +Q   A E L +  K+   
Sbjct: 439 VCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQNQAGEVL-RLTKLMFA 497

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
                D +TL ++L +SG++A+ E+  Q+H    ++G     SV N LI+ Y+KCG+++ 
Sbjct: 498 SRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKCGSLEC 557

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           A  +F+ +G   D++SW+++I GY   G G+ A  L+  M   G  P+  T++ IL AC 
Sbjct: 558 ARKMFDSIGN-PDIISWSSLIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGILTACS 616

Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIW 526
           H G+  +GL ++  M E+ ++ P++EH  C+VDLLARAGCL  A     ++       +W
Sbjct: 617 HIGMVEEGLKLYRTMQEDYRISPTKEHCSCMVDLLARAGCLDVAEDFIRQMPFVPDVVVW 676

Query: 527 RALLSGCVLH---------------------------------VGRFQDAEALRSGSQKK 553
           + LL+ C +H                                  G ++D   LRS  ++ 
Sbjct: 677 KTLLAACKVHGNLEVGKRAAENVLKIDPSNSAAVVMLCNIHASSGHWKDFARLRSSMRRM 736

Query: 554 GIIKIPGISFL 564
            + K+PG S++
Sbjct: 737 DVGKVPGQSWI 747



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 98/355 (27%), Positives = 175/355 (49%), Gaps = 2/355 (0%)

Query: 130 LFQQAVLLFNFFRGSGLVP-NAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVN 188
           L ++A+  F+ F+     P  +VT   +I  C +L S      IH   +      D+ + 
Sbjct: 77  LHREALKAFDIFQKCSSSPLKSVTYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQ 136

Query: 189 NSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRII 248
           N +L MY     L  A  +F  M  K+V+SWT M+  +  +    +A+ ++ +M +S  I
Sbjct: 137 NHILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHI 196

Query: 249 CDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSV 308
            D     +++   + L D K  +QLHA V+     ++L   N++I+MY+K   +  + +V
Sbjct: 197 PDHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINV 256

Query: 309 FNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAA 368
           F++I  K L+SW ++I+G+ Q G   EAL  F +M  +     +     S  +A  +L  
Sbjct: 257 FSRIIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLE 316

Query: 369 LEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIY 428
            +   Q+HG+  + G          L   Y+KCG ++ A  VF  +    D+V+WN II 
Sbjct: 317 PDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIE-KPDLVAWNAIIA 375

Query: 429 GYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIE 483
           G+    + + + + + +M  TG VP+  T LS+L AC    + N G+ + + +++
Sbjct: 376 GFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVK 430



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 90/398 (22%), Positives = 182/398 (45%), Gaps = 46/398 (11%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +    L   Y K G ++ A  +F  I + ++V+W+ +I G++     ++S   FS M 
Sbjct: 335 DLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMR 394

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------- 106
            +GL+PN  T++ +L A +    L     +H  +VK G   D+                 
Sbjct: 395 HTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLN 454

Query: 107 -----FEGLKNPY-LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                FE + N   +VS N ++   +      + + L      S + P+ VT+  V+   
Sbjct: 455 DALQVFEDIGNKADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSS 514

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             + S  +   IH   +K GL LD+SV+N++++MY+    L+ A ++F  +   D+ISW+
Sbjct: 515 GQIASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKCGSLECARKMFDSIGNPDIISWS 574

Query: 221 RMMGLFVDFEYAG---DALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
               L V +  AG   +A ++FR MR   +  + +  + +++  + +G ++ G +L+   
Sbjct: 575 ---SLIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGILTACSHIGMVEEGLKLYRT- 630

Query: 278 VLGGLQSELRLSNS------IIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISGYVQN 330
               +Q + R+S +      ++ + ++ G LD +     Q+     +V W  +++    +
Sbjct: 631 ----MQEDYRISPTKEHCSCMVDLLARAGCLDVAEDFIRQMPFVPDVVVWKTLLAACKVH 686

Query: 331 G---CAREALNQFIKMRQEKTDSVDSITLVSILTASGE 365
           G     + A    +K+  + ++S   + L +I  +SG 
Sbjct: 687 GNLEVGKRAAENVLKI--DPSNSAAVVMLCNIHASSGH 722


>gi|297802056|ref|XP_002868912.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297314748|gb|EFH45171.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1057

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 191/621 (30%), Positives = 304/621 (48%), Gaps = 63/621 (10%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + L+  Y K G I  A  +FD +PEK+ V+W+ +I G    G    S++ F  +M
Sbjct: 182 DVYVGTLLIDFYLKEGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLM 241

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
              ++P+ + +  VL A + L  LE  + IH  ++++G E D                  
Sbjct: 242 EGNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGHEKDASLMNVLIDSYVKCGRVR 301

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               LF+G+ N  ++S   +++G+  N L ++A+ LF      GL P+     +++  C 
Sbjct: 302 AAHKLFDGMPNKNIISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILTSCA 361

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
           +L +      +H  TIK  L  D  V NS++DMY+    L  A ++F      DV+ +  
Sbjct: 362 SLHALEFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTEARKVFDIFAADDVVLFNA 421

Query: 222 MM----GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           M+     L   +E   DAL IF +MR   I    +  ++L+  +A L  L   KQ+H  +
Sbjct: 422 MIEGYSRLGTQWELH-DALNIFHDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLM 480

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
              GL  ++   +++IA+YS C  L  SR VF+++  K LV W ++ SGYVQ     EAL
Sbjct: 481 FKFGLNLDIFAGSALIAVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFSGYVQQSENEEAL 540

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
           N F+++ Q   D  D  T V ++TA+G LA+L++  + H    + G      + N L+  
Sbjct: 541 NLFLEL-QLSRDRPDEFTFVDMVTAAGNLASLQLGQEFHCQLLKRGLECNPYITNALLDM 599

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           Y+KCG+ + A+  F+     RDVV WN++I  Y  +G G  AL +  KM   G  P+  T
Sbjct: 600 YAKCGSPEDAHKAFDSAA-SRDVVCWNSVISSYANHGEGRKALQMLEKMMCEGIEPNYIT 658

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL 517
           ++ +L+AC HAGL  DGL  F  M+    ++P  EHY C+V LL RAG L++A  L  K+
Sbjct: 659 FVGVLSACSHAGLVEDGLKQFELMLRFG-IEPETEHYVCMVSLLGRAGRLNEARELIEKM 717

Query: 518 LEGMGPNIWRALLSGCV---------------------------------LHVGRFQDAE 544
                  +WR+LLSGC                                     G + DA+
Sbjct: 718 PTKPAAIVWRSLLSGCAKAGNVELAEYAAEMAILSDPKDSGSFTLLSNIYASKGMWTDAK 777

Query: 545 ALRSGSQKKGIIKIPGISFLN 565
            +R   + +G++K PG S++ 
Sbjct: 778 KVRERMKFEGVVKEPGRSWIE 798



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 141/536 (26%), Positives = 261/536 (48%), Gaps = 31/536 (5%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D Y S+ L++ Y ++G +  A  +F+++PE+N+V+WS ++   + +GF+E+S+  F   
Sbjct: 77  LDTYLSNILMNLYSRAGGMVYARKVFEKMPERNLVTWSTMVSACNHHGFYEESLVVFLDF 136

Query: 63  MLSGL-LPNSFTMVGVLVAAAGLQ--NLELARSIHGLMVKFGLESDLFEG--LKNPYLVS 117
             +    PN + +   + A +GL      +   +   +VK   + D++ G  L + YL  
Sbjct: 137 WRTRKNSPNEYILSSFIQACSGLDGSGRWMVFQLQSFLVKSRFDRDVYVGTLLIDFYLKE 196

Query: 118 CNAIVAGFINNKLFQQAVL--------------------LFNFFRGSGLVPNAVTMLTVI 157
            N   A  + + L +++ +                    LF       +VP+   + TV+
Sbjct: 197 GNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEGNVVPDGYILSTVL 256

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
             C  L      + IH   ++ G   D S+ N ++D Y     + AA ++F  M  K++I
Sbjct: 257 SACSILPFLEGGKQIHAHILRYGHEKDASLMNVLIDSYVKCGRVRAAHKLFDGMPNKNII 316

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           SWT ++  +       +A+++F  M K  +  D  A  ++++  A L  L+ G Q+HA  
Sbjct: 317 SWTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILTSCASLHALEFGTQVHAYT 376

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE-- 335
           +   L ++  ++NS+I MY+KC  L  +R VF+      +V + A+I GY + G   E  
Sbjct: 377 IKANLGNDSYVTNSLIDMYAKCDCLTEARKVFDIFAADDVVLFNAMIEGYSRLGTQWELH 436

Query: 336 -ALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
            ALN F  MR  +      +T VS+L AS  L +L +  Q+HG+ F+ G        + L
Sbjct: 437 DALNIFHDMRF-RLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKFGLNLDIFAGSAL 495

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           I+ YS C  +  + +VF+EM  ++D+V WN++  GY      E AL L+ ++  + + PD
Sbjct: 496 IAVYSNCYCLKDSRLVFDEMK-VKDLVIWNSMFSGYVQQSENEEALNLFLELQLSRDRPD 554

Query: 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
             T++ ++ A G+      G     Q+++   ++ +      ++D+ A+ G   DA
Sbjct: 555 EFTFVDMVTAAGNLASLQLGQEFHCQLLKRG-LECNPYITNALLDMYAKCGSPEDA 609



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 137/543 (25%), Positives = 243/543 (44%), Gaps = 65/543 (11%)

Query: 19  GKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVL 78
            ++ +   L D +   NVV   I++ G  ++ +            LS +L N ++  G +
Sbjct: 48  ARLLQLRALDDPLLYHNVVHGQIIVSGLELDTY------------LSNILMNLYSRAGGM 95

Query: 79  VAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLF 138
           V A                        +FE +    LV+ + +V+   ++  +++++++F
Sbjct: 96  VYA----------------------RKVFEKMPERNLVTWSTMVSACNHHGFYEESLVVF 133

Query: 139 -NFFRGSGLVPNAVTMLTVIRGCVAL--GSRALCELIHGLTIKLGLILDVSVNNSVLDMY 195
            +F+R     PN   + + I+ C  L    R +   +    +K     DV V   ++D Y
Sbjct: 134 LDFWRTRKNSPNEYILSSFIQACSGLDGSGRWMVFQLQSFLVKSRFDRDVYVGTLLIDFY 193

Query: 196 SCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALL 255
               ++D A  +F  +  K  ++WT M+   V    +  +L++F ++ +  ++ D   L 
Sbjct: 194 LKEGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEGNVVPDGYILS 253

Query: 256 NLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK 315
            ++S  +IL  L+ GKQ+HA ++  G + +  L N +I  Y KCG + ++  +F+ +  K
Sbjct: 254 TVLSACSILPFLEGGKQIHAHILRYGHEKDASLMNVLIDSYVKCGRVRAAHKLFDGMPNK 313

Query: 316 SLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQL 375
           +++SWT ++SGY QN   +EA+  F  M +      D     SILT+   L ALE   Q+
Sbjct: 314 NIISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKP-DMFACSSILTSCASLHALEFGTQV 372

Query: 376 HGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGY---GV 432
           H    +A       V N LI  Y+KC  +  A  VF+      DVV +N +I GY   G 
Sbjct: 373 HAYTIKANLGNDSYVTNSLIDMYAKCDCLTEARKVFDIFA-ADDVVLFNAMIEGYSRLGT 431

Query: 433 NGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQE 492
                 AL ++H M      P   T++S+L A   A LT+ GL          ++     
Sbjct: 432 QWELHDALNIFHDMRFRLIRPSLLTFVSLLRAS--ASLTSLGL--------SKQIHGLMF 481

Query: 493 HYGCVVDLLARAG---------CLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDA 543
            +G  +D+ A +          CL D S L    ++     IW ++ SG   +V + ++ 
Sbjct: 482 KFGLNLDIFAGSALIAVYSNCYCLKD-SRLVFDEMKVKDLVIWNSMFSG---YVQQSENE 537

Query: 544 EAL 546
           EAL
Sbjct: 538 EAL 540



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 88/184 (47%), Gaps = 22/184 (11%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  S L++ Y     +K++  +FDE+  K++V W+ +  GY     +E+++  F  +
Sbjct: 487 LDIFAGSALIAVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFSGYVQQSENEEALNLFLEL 546

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES---------DLFEGLKNP 113
            LS   P+ FT V ++ AA  L +L+L +  H  ++K GLE          D++    +P
Sbjct: 547 QLSRDRPDEFTFVDMVTAAGNLASLQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSP 606

Query: 114 Y-------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                         +V  N++++ + N+   ++A+ +       G+ PN +T + V+  C
Sbjct: 607 EDAHKAFDSAASRDVVCWNSVISSYANHGEGRKALQMLEKMMCEGIEPNYITFVGVLSAC 666

Query: 161 VALG 164
              G
Sbjct: 667 SHAG 670


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  286 bits (731), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 175/550 (31%), Positives = 295/550 (53%), Gaps = 24/550 (4%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           +KL+S + + G + EA  +F+ I +K  V +  ++ G++     +K++K F  M    + 
Sbjct: 73  TKLVSLFCRYGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKALKFFVRMRDDEVE 132

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY------------ 114
           P  +    +L        L + + IHGL+VK G   DLF   GL+N Y            
Sbjct: 133 PVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKV 192

Query: 115 --------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
                   LVS N IVAG+  N + + A+ + N      L P+ +T+++V+    AL   
Sbjct: 193 FDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLI 252

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
            + + IHG  ++ G    V++  +++DMY+    L  A  +F  M  ++V+SW  M+  +
Sbjct: 253 RIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAY 312

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
           V  E   +A+ IF++M    +    V+++  +   A LGDL+RG+ +H   V   L   +
Sbjct: 313 VQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELELDRNV 372

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            + NS+I+MY KC ++D++ S+F ++  +++VSW A+I G+ QNG   EALN F +M Q 
Sbjct: 373 SVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQM-QA 431

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
           +T   D+ T VS++TA  EL+       +HG+       +   V   L+  Y+KCG + +
Sbjct: 432 RTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMI 491

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           A ++F+ M   R V +WN +I GYG +G G+ AL L+ +M +    P+  T+LS+++AC 
Sbjct: 492 ARLIFDMMS-ERHVTTWNAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACS 550

Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIW 526
           H+GL   GL  F+ M E   ++PS +HYG +VDLL RAG L++A     ++      N++
Sbjct: 551 HSGLVEAGLKCFHMMKENYSIEPSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVY 610

Query: 527 RALLSGCVLH 536
            A+L  C +H
Sbjct: 611 GAMLGACQIH 620



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 104/394 (26%), Positives = 206/394 (52%), Gaps = 23/394 (5%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  + L + Y K  ++ EA  +FD +PE+++VSW+ ++ GYS NG    +++  + M
Sbjct: 168 LDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLM 227

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES------------------ 104
               L P+  T+V VL A + L+ + + + IHG  ++ G +S                  
Sbjct: 228 CEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSL 287

Query: 105 ----DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                LF+G+    +VS N+++  ++ N+  ++A+++F      G+ P  V+++  +  C
Sbjct: 288 KTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHAC 347

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             LG       IH L+++L L  +VSV NS++ MY    ++D A  +F +++ + ++SW 
Sbjct: 348 ADLGDLERGRFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWN 407

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+  F       +AL  F +M+   +  DT   +++I+  A L      K +H  V+  
Sbjct: 408 AMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRN 467

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
            L   + ++ +++ MY+KCG +  +R +F+ ++E+ + +W A+I GY  +G  + AL  F
Sbjct: 468 CLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGIGKAALELF 527

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQ 374
            +M Q+ T   + +T +S+++A      +E  L+
Sbjct: 528 EEM-QKGTIRPNGVTFLSVISACSHSGLVEAGLK 560



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 158/319 (49%), Gaps = 4/319 (1%)

Query: 167 ALCELIH--GLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
           +L EL H   L  K GL  +      ++ ++     +D A ++F  ++ K  + +  M+ 
Sbjct: 49  SLKELRHILPLIFKNGLYQEHLFQTKLVSLFCRYGSVDEAARVFEPIDKKLNVLYYTMLK 108

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            F        ALK F  MR   +         L+ V     +L+ GK++H  +V  G   
Sbjct: 109 GFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSL 168

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           +L     +  MY+KC  +  +R VF+++ E+ LVSW  I++GY QNG AR AL + + + 
Sbjct: 169 DLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMAL-EMVNLM 227

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
            E+      IT+VS+L A   L  + I  ++HG A  AGF    ++   L+  Y+KCG++
Sbjct: 228 CEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSL 287

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
             A ++F+ M   R+VVSWN++I  Y  N + + A+ ++ KM + G  P   + +  L+A
Sbjct: 288 KTARLLFDGM-LERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHA 346

Query: 465 CGHAGLTNDGLVIFNQMIE 483
           C   G    G  I    +E
Sbjct: 347 CADLGDLERGRFIHKLSVE 365


>gi|224077710|ref|XP_002305373.1| predicted protein [Populus trichocarpa]
 gi|222848337|gb|EEE85884.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  286 bits (731), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 186/620 (30%), Positives = 321/620 (51%), Gaps = 59/620 (9%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS-GL 67
           S L++ Y   G +  A  LFDE+ ++  + ++ +I  Y   G + ++MK F  M+ S   
Sbjct: 59  SVLVATYAHCGYVHNARKLFDELRQRGTLLYNFMIKMYIAKGDYFEAMKVFLEMLGSKDC 118

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMV--KFGLE--------------------SD 105
            P+++T   V+ A + L  +E  R +HGL +  KFG                        
Sbjct: 119 CPDNYTYPFVIKACSELLLVEYGRVLHGLTLVSKFGSHLFVLNSLLAMYMNCGEVEEARK 178

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F+ +K   +VS N ++ G+  N     A+++FN    SG+  +  ++++V+  C  L  
Sbjct: 179 VFDAMKEKSVVSWNTMINGYFKNGFANTALVVFNQMVDSGVEIDGASVVSVLPACGYLKE 238

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
             +   +HGL ++  ++    V+N+++DMY+    +D A  +F  M  +DV+SWT M+  
Sbjct: 239 LEVGRRVHGL-VEEKVLGKKIVSNALVDMYAKCGSMDEARLVFDNMVERDVVSWTSMING 297

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           ++    A  AL +F+ M+   +  ++V +  ++   A L +LK G+ LH  V+   L SE
Sbjct: 298 YILNGDAKSALSLFKIMQIEGLRPNSVTIALILLACASLNNLKDGRCLHGWVMKQRLYSE 357

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           + +  S+I MY+KC  L  S SVF + + K  V W A++SG V N  A EA+  F KM  
Sbjct: 358 VAVETSLIDMYAKCNCLGLSFSVFTRTSRKKTVPWNALLSGCVHNKLATEAIGLFKKMLM 417

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
           E  + +++ T  S+L A G LA L+    ++     +GF     V   LI  YSKCG+++
Sbjct: 418 EGVE-INAATCNSLLPAYGILADLQPVNNINSYLMRSGFVSNIQVATSLIDIYSKCGSLE 476

Query: 406 LAYIVFEEMGF-LRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
            A+ +F  +   ++D+  W+ II GYG++GHGETA++L+ +M ++G  P+  T+ S+L +
Sbjct: 477 SAHKIFNTIPVDVQDIFVWSIIIAGYGMHGHGETAVSLFKQMVQSGVKPNDVTFTSVLQS 536

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C HAG+ +DGL +F  M+++++  P+ +HY C+VDLL RAG + +A  L   +    G  
Sbjct: 537 CSHAGMVDDGLYLFKFMLKDHQTIPNDDHYTCMVDLLGRAGRMDEAYDLIKTMPFMPGHA 596

Query: 525 IWRALLSGCVLH---------------------------------VGRFQDAEALRSGSQ 551
           +W ALL  CV+H                                 +GR++DAE +R    
Sbjct: 597 VWGALLGACVMHENVELGEVAARWLFELEPGNTGNYVLLAKLYAALGRWEDAENVRQRMD 656

Query: 552 KKGIIKIPGISFLNSTSRDF 571
             G+ K P  S + + + ++
Sbjct: 657 DIGLRKAPAHSLIEAGTVNW 676



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/294 (29%), Positives = 155/294 (52%), Gaps = 16/294 (5%)

Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISG 326
           L   KQLHA ++  GL S + + + ++A Y+ CG + ++R +F+++ ++  + +  +I  
Sbjct: 37  LTSTKQLHAHLITSGLLS-IDIRSVLVATYAHCGYVHNARKLFDELRQRGTLLYNFMIKM 95

Query: 327 YVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPR 386
           Y+  G   EA+  F++M   K    D+ T   ++ A  EL  +E    LHG+   + F  
Sbjct: 96  YIAKGDYFEAMKVFLEMLGSKDCCPDNYTYPFVIKACSELLLVEYGRVLHGLTLVSKFGS 155

Query: 387 YRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM 446
           +  V N L++ Y  CG V+ A  VF+ M   + VVSWNT+I GY  NG   TAL ++++M
Sbjct: 156 HLFVLNSLLAMYMNCGEVEEARKVFDAMK-EKSVVSWNTMINGYFKNGFANTALVVFNQM 214

Query: 447 TETGEVPDSSTYLSILNACGH-----AGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLL 501
            ++G   D ++ +S+L ACG+      G    GLV       E KV   +     +VD+ 
Sbjct: 215 VDSGVEIDGASVVSVLPACGYLKELEVGRRVHGLV-------EEKVLGKKIVSNALVDMY 267

Query: 502 ARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGI 555
           A+ G + +A  +   ++E    + W ++++G +L+ G  + A +L    Q +G+
Sbjct: 268 AKCGSMDEARLVFDNMVERDVVS-WTSMINGYILN-GDAKSALSLFKIMQIEGL 319



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 138/275 (50%), Gaps = 24/275 (8%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ L+  Y K G + EA  +FD + E++VVSW+ +I+GY +NG  + ++  F  M + GL
Sbjct: 260 SNALVDMYAKCGSMDEARLVFDNMVERDVVSWTSMINGYILNGDAKSALSLFKIMQIEGL 319

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVK----------------------FGLESD 105
            PNS T+  +L+A A L NL+  R +HG ++K                       GL   
Sbjct: 320 RPNSVTIALILLACASLNNLKDGRCLHGWVMKQRLYSEVAVETSLIDMYAKCNCLGLSFS 379

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F        V  NA+++G ++NKL  +A+ LF      G+  NA T  +++     L  
Sbjct: 380 VFTRTSRKKTVPWNALLSGCVHNKLATEAIGLFKKMLMEGVEINAATCNSLLPAYGILAD 439

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM--ECKDVISWTRMM 223
                 I+   ++ G + ++ V  S++D+YS    L++A +IF  +  + +D+  W+ ++
Sbjct: 440 LQPVNNINSYLMRSGFVSNIQVATSLIDIYSKCGSLESAHKIFNTIPVDVQDIFVWSIII 499

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLI 258
             +    +   A+ +F++M +S +  + V   +++
Sbjct: 500 AGYGMHGHGETAVSLFKQMVQSGVKPNDVTFTSVL 534



 Score = 38.5 bits (88), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 358 SILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFL 417
           S+L   G   +L    QLH     +G      +++ L+++Y+ CG V  A  +F+E+   
Sbjct: 26  SLLKHYGAAQSLTSTKQLHAHLITSGLLSI-DIRSVLVATYAHCGYVHNARKLFDELR-Q 83

Query: 418 RDVVSWNTIIYGYGVNGHGETALALYHKMTETGE-VPDSSTYLSILNACGHAGLTNDGLV 476
           R  + +N +I  Y   G    A+ ++ +M  + +  PD+ TY  ++ AC    L   G V
Sbjct: 84  RGTLLYNFMIKMYIAKGDYFEAMKVFLEMLGSKDCCPDNYTYPFVIKACSELLLVEYGRV 143

Query: 477 I 477
           +
Sbjct: 144 L 144


>gi|115456537|ref|NP_001051869.1| Os03g0844000 [Oryza sativa Japonica Group]
 gi|41469627|gb|AAS07350.1| putative pentatricopeptide repeat domain contianing protein [Oryza
           sativa Japonica Group]
 gi|113550340|dbj|BAF13783.1| Os03g0844000 [Oryza sativa Japonica Group]
 gi|215686748|dbj|BAG89598.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 702

 Score =  286 bits (731), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 171/551 (31%), Positives = 281/551 (50%), Gaps = 33/551 (5%)

Query: 10  KLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLP 69
           K L+   KSG++ +A +LFD +P KNVV+W+ V+ GY+ NG  E ++  F+ M+ SG+ P
Sbjct: 53  KRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAP 112

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LF 107
           N F     LVA A L  L     +H L V+ G   D                      +F
Sbjct: 113 NDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVF 172

Query: 108 EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRA 167
           + + +P +V   ++++ F  N  F+ A          GL PN  TM T++  C     R 
Sbjct: 173 DRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTAC----PRV 228

Query: 168 LCELIHGLTIK-LGL-ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
           L + IHG  IK +GL    V  + +++D YS   +   A  +F  + CK+V+SW  MM L
Sbjct: 229 LGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQL 288

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           ++      +AL++F +M    +  +  AL  ++      G +  G+QLH   +   L ++
Sbjct: 289 YIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGA---CGSIGLGRQLHCSAIKHDLITD 345

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           +R+SN++++MY + G ++   ++ N+I    LVSWT  IS   QNG   +A+    +M  
Sbjct: 346 IRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHS 405

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
           E   + +     S+L++  ++A+L+  +Q H +A + G        N LI+ YSKCG + 
Sbjct: 406 EGF-TPNGYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMG 464

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            A + F+ M    DV SWN++I+G+  +G    AL ++ KM   G  PD ST+L +L  C
Sbjct: 465 SARLAFDVM-HTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGC 523

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI 525
            H+G+  +G + F  MI++    P+  HY C++D+L R G   +A  +   +       I
Sbjct: 524 NHSGMVEEGELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALI 583

Query: 526 WRALLSGCVLH 536
           W+ LL+ C LH
Sbjct: 584 WKTLLASCKLH 594



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 129/512 (25%), Positives = 229/512 (44%), Gaps = 39/512 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  S L+  Y + G +  A+ +FD +   +VV ++ +I  +  NG  E + +A   M+
Sbjct: 148 DAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQML 207

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK------------------------ 99
             GL PN  TM  +L A   +    L + IHG ++K                        
Sbjct: 208 KQGLKPNEHTMTTILTACPRV----LGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGE 263

Query: 100 FGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
           F L   +F+ L    +VS  +++  +I +   ++A+ +F      G+ PN   +  V+  
Sbjct: 264 FKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGA 323

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C   GS  L   +H   IK  LI D+ V+N++L MY     ++    +  ++E  D++SW
Sbjct: 324 C---GSIGLGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSW 380

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           T  +       +   A+ +  +M       +  A  +++S  A +  L +G Q H   + 
Sbjct: 381 TTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLALK 440

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G  SE+   N++I MYSKCG + S+R  F+ +    + SW ++I G+ Q+G A +AL  
Sbjct: 441 LGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIHGHAQHGDANKALEV 500

Query: 340 FIKMRQEKTDSVDSITLVSILTA---SGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
           F KMR       DS T + +L     SG +   E+  +L  +  +  F    S   C+I 
Sbjct: 501 FSKMRSNGIKPDDS-TFLGVLMGCNHSGMVEEGELFFRL--MIDQYSFTPAPSHYACMID 557

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
              + G  D A  +  +M F  D + W T++    ++ + +       ++ E  +  DS+
Sbjct: 558 MLGRNGRFDEALRMINDMPFEPDALIWKTLLASCKLHRNLDIGKLAADRLMELSDR-DSA 616

Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVK 488
           +Y+ + N     G   D   +  +M +E  VK
Sbjct: 617 SYVLMSNIYAMHGEWEDARKVRRRM-DETGVK 647


>gi|359481513|ref|XP_003632631.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Vitis vinifera]
          Length = 755

 Score =  285 bits (730), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 186/621 (29%), Positives = 310/621 (49%), Gaps = 69/621 (11%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           +L+ Y K   +K+A+ +FD +PE+NVVSW+ VI GYS NG    +++ +  M+ SG++P+
Sbjct: 104 ILNMYGKCKSLKDAQKVFDAMPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPD 163

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVK--FGLES--------------------DLFE 108
            FT   ++ A + L ++ L R +H  ++K  FG                       D+F 
Sbjct: 164 QFTFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVFS 223

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGL-VPNAVTMLTVIRGCVALGSRA 167
            +    L+S  +++AGF       +A+  F      G+ +PN     +V   C +L    
Sbjct: 224 RMATRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPE 283

Query: 168 LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
               +HG++IK GL  DV    S+ DMY+    L  A  +F ++   D+++W     +  
Sbjct: 284 YGRQLHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQIGRPDLVAWN---AIIA 340

Query: 228 DFEYAGDA---LKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            F Y GDA   +  F +MR   +I D + + +L+       +L +G Q+H  +   GL  
Sbjct: 341 GFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSELYQGMQVHGYINKMGLDL 400

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQI-TEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
           ++ + N+++ MY+KC +L  +   F ++     LVSW AI++  +++  A E   + +K+
Sbjct: 401 DVPVCNTLLTMYAKCSELRDAIFFFEEMRCNADLVSWNAILTACMRHDQAEEVF-RLLKL 459

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
                   D ITL ++L AS E  ++EI  Q+H  A + G     SV N LI  Y+KCG+
Sbjct: 460 MCISQHRPDYITLTNVLGASAETVSIEIGNQVHCYALKTGLNCDTSVTNGLIDLYAKCGS 519

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           +  A+ +F+ M    DVVSW+++I GY   G+GE AL L+  M      P+  T++ +L 
Sbjct: 520 LKTAHKIFDSM-INPDVVSWSSLILGYAQFGYGEEALKLFKTMRRLDVKPNHVTFVGVLT 578

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
           AC H GL  +G  ++  M +E  + P++EH  C+VDLLARAGCL++A G   ++     P
Sbjct: 579 ACSHVGLVEEGWKLYGTMEKEFGIAPTREHCSCMVDLLARAGCLNEAEGFIHQM--AFDP 636

Query: 524 NI--WRALLSGCVLH---------------------------------VGRFQDAEALRS 548
           +I  W+ LL+ C  H                                  G ++D   LRS
Sbjct: 637 DIVVWKTLLAACKTHGNVDVGKRAAENILKIDPSNSAAHVLLCNIYASKGNWEDVARLRS 696

Query: 549 GSQKKGIIKIPGISFLNSTSR 569
             +++G+ K+PG S++    R
Sbjct: 697 LMKQRGVRKVPGQSWIEVKDR 717



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 118/423 (27%), Positives = 201/423 (47%), Gaps = 7/423 (1%)

Query: 117 SCNAIVAGFINNKLFQQAVLLFNFF-RGSGLVPNAVTMLTVIRGCVALGSRALCELIHGL 175
           S N  +      KLF +A+  F F  + +G      T   +I  C  L S    + IH  
Sbjct: 29  SSNEYITSLCKQKLFNEAIKAFEFLQKKTGFCLTLSTYAYLISACSYLRSLEHGKKIHDH 88

Query: 176 TIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDA 235
            +K     D+++ N +L+MY     L  A ++F  M  ++V+SWT ++  +      G+A
Sbjct: 89  MLKSKSHPDLTLQNHILNMYGKCKSLKDAQKVFDAMPERNVVSWTSVIAGYSQNGQGGNA 148

Query: 236 LKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAM 295
           L+ + +M +S ++ D     ++I   + LGD+  G+QLHA V+     + +   N++I+M
Sbjct: 149 LEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISM 208

Query: 296 YSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSIT 355
           Y+K   +  +  VF+++  + L+SW ++I+G+ Q G   EAL  F +M  +     +   
Sbjct: 209 YTKSNLIIDALDVFSRMATRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFI 268

Query: 356 LVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMG 415
             S+ +A   L   E   QLHG++ + G  R       L   Y+KCG +  A +VF ++G
Sbjct: 269 FGSVFSACSSLLQPEYGRQLHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQIG 328

Query: 416 FLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGL 475
              D+V+WN II G+   G  + A+A + +M   G +PD  T  S+L AC        G+
Sbjct: 329 -RPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSELYQGM 387

Query: 476 VIFNQMIEENKVKPSQEHYGCVVDLLARAGC--LSDASGLAGKLLEGMGPNIWRALLSGC 533
            +   +   NK+    +   C   L   A C  L DA     ++        W A+L+ C
Sbjct: 388 QVHGYI---NKMGLDLDVPVCNTLLTMYAKCSELRDAIFFFEEMRCNADLVSWNAILTAC 444

Query: 534 VLH 536
           + H
Sbjct: 445 MRH 447



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 92/411 (22%), Positives = 189/411 (45%), Gaps = 43/411 (10%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +    L   Y K G +  A  +F +I   ++V+W+ +I G++  G  ++++  FS M 
Sbjct: 300 DVFAGCSLCDMYAKCGLLSCARVVFYQIGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMR 359

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------- 106
             GL+P+  T+  +L A      L     +HG + K GL+ D+                 
Sbjct: 360 HQGLIPDEITVRSLLCACTSPSELYQGMQVHGYINKMGLDLDVPVCNTLLTMYAKCSELR 419

Query: 107 -----FEGLK-NPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                FE ++ N  LVS NAI+   + +   ++   L      S   P+ +T+  V+   
Sbjct: 420 DAIFFFEEMRCNADLVSWNAILTACMRHDQAEEVFRLLKLMCISQHRPDYITLTNVLGAS 479

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
               S  +   +H   +K GL  D SV N ++D+Y+    L  A +IF  M   DV+SW+
Sbjct: 480 AETVSIEIGNQVHCYALKTGLNCDTSVTNGLIDLYAKCGSLKTAHKIFDSMINPDVVSWS 539

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++  +  F Y  +ALK+F+ MR+  +  + V  + +++  + +G ++ G +L+     G
Sbjct: 540 SLILGYAQFGYGEEALKLFKTMRRLDVKPNHVTFVGVLTACSHVGLVEEGWKLY-----G 594

Query: 281 GLQSELRLSNS------IIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISGYVQNG-- 331
            ++ E  ++ +      ++ + ++ G L+ +    +Q+  +  +V W  +++    +G  
Sbjct: 595 TMEKEFGIAPTREHCSCMVDLLARAGCLNEAEGFIHQMAFDPDIVVWKTLLAACKTHGNV 654

Query: 332 -CAREALNQFIKMRQEKTDSVDSITLVSILTASG---ELAALEICLQLHGI 378
              + A    +K+  + ++S   + L +I  + G   ++A L   ++  G+
Sbjct: 655 DVGKRAAENILKI--DPSNSAAHVLLCNIYASKGNWEDVARLRSLMKQRGV 703


>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
          Length = 1008

 Score =  285 bits (730), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 182/550 (33%), Positives = 281/550 (51%), Gaps = 49/550 (8%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           +LS Y  SG +  A++LF   P +N  +W+I++  ++  G    ++  F  M+  G++P+
Sbjct: 294 ILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPD 353

Query: 71  SFTMVGVLVAAAGLQNLE--LARSIHGLMVKFGLESDLF-----------EGL------- 110
             T+  VL       NL      S+H   +KFGL++ +F            GL       
Sbjct: 354 RVTVTTVL-------NLPGCTVPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRV 406

Query: 111 ----KNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
                +   V+ NA++ G     L  QA+ LF   R +G   + + +L          SR
Sbjct: 407 FLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGYSRHPLHLLQYSH------SR 460

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
           +          +   +L+V VNNS+LD YS    LD   ++F EM  +D +S+  ++  +
Sbjct: 461 S----------RSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAY 510

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
              + A   L++FREM+K       +    ++SV   L D+  GKQ+HAQ+VL GL SE 
Sbjct: 511 AWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASED 570

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            L N++I MYSKCG LD+++S F+  +EKS +SWTA+I+GYVQNG   EAL  F  MR+ 
Sbjct: 571 LLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRA 630

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
                D  T  SI+ AS  LA + +  QLH     +G+       + L+  Y+KCG +D 
Sbjct: 631 GLRP-DRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDE 689

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           A   F+EM   R+ +SWN +I  Y   G  + A+ ++  M   G  PDS T+LS+L AC 
Sbjct: 690 ALRTFDEMP-ERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACS 748

Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIW 526
           H GL ++ +  F+ M  +  + P +EHY CV+D L R GC S    +  ++     P IW
Sbjct: 749 HNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIW 808

Query: 527 RALLSGCVLH 536
            ++L  C +H
Sbjct: 809 TSILHSCRIH 818



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 120/487 (24%), Positives = 228/487 (46%), Gaps = 9/487 (1%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           LL  Y K G +  A  +F E+ +K+ V+++ ++ G S  G H ++++ F+ M  +G   +
Sbjct: 390 LLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGYSRH 449

Query: 71  SFTMVGVLVA---AAGLQNLELARSIHGLMVKFGLESD---LFEGLKNPYLVSCNAIVAG 124
              ++    +   +  + N+ +  S+     K     D   LF+ +     VS N I+A 
Sbjct: 450 PLHLLQYSHSRSRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAA 509

Query: 125 FINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILD 184
           +  N+     + LF   +  G     +   T++    +L    + + IH   + LGL  +
Sbjct: 510 YAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASE 569

Query: 185 VSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRK 244
             + N+++DMYS    LDAA   F     K  ISWT ++  +V      +AL++F +MR+
Sbjct: 570 DLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRR 629

Query: 245 SRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDS 304
           + +  D     ++I  ++ L  +  G+QLH+ ++  G +S +   + ++ MY+KCG LD 
Sbjct: 630 AGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDE 689

Query: 305 SRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASG 364
           +   F+++ E++ +SW A+IS Y   G A+ A+  F  M     +  DS+T +S+L A  
Sbjct: 690 ALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNP-DSVTFLSVLAACS 748

Query: 365 ELAALEICLQ-LHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSW 423
                + C++  H +  +     ++    C+I +  + G       +  EM F  D + W
Sbjct: 749 HNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIW 808

Query: 424 NTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIE 483
            +I++   ++G+ E A     K+    E  D++ Y+ + N    AG   D   +   M +
Sbjct: 809 TSILHSCRIHGNQELARVAADKLFGM-EPTDATPYVILSNIYARAGQWEDAACVKKIMRD 867

Query: 484 ENKVKPS 490
               K S
Sbjct: 868 RGVRKES 874



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 92/407 (22%), Positives = 182/407 (44%), Gaps = 38/407 (9%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           LL  Y K   + +   LFDE+PE++ VS++++I  Y+ N      ++ F  M   G    
Sbjct: 475 LLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQ 534

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------LFEGLKNPY- 114
                 +L  A  L ++ + + IH  +V  GL S+               + +  K+ + 
Sbjct: 535 VLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFS 594

Query: 115 ------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
                  +S  A++ G++ N   ++A+ LF+  R +GL P+  T  ++I+   +L    L
Sbjct: 595 NRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGL 654

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
              +H   I+ G    V   + ++DMY+    LD A++ F EM  ++ ISW  ++  +  
Sbjct: 655 GRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAH 714

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLI---SVNAILGD-LKRGKQLHAQVVLGGLQS 284
           +  A +A+K+F  M       D+V  L+++   S N +  + +K    +  Q  +   + 
Sbjct: 715 YGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKE 774

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKS-LVSWTAIISGYVQNG---CAREALNQF 340
                  +I    + G     + +  ++  K+  + WT+I+     +G    AR A ++ 
Sbjct: 775 HY---ACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKL 831

Query: 341 IKMRQEKTDSVDSITLVSILTASGEL---AALEICLQLHGIAFEAGF 384
             M  E TD+   + L +I   +G+    A ++  ++  G+  E+G+
Sbjct: 832 FGM--EPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGY 876



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 72/176 (40%), Gaps = 26/176 (14%)

Query: 300 GDLDSSRSVFNQITEKSLVSWTAIISGYVQNG------------CAREALNQFIKMRQEK 347
           G L  +R++F+Q+  K++ S   I+S Y  +G              R A    I MR   
Sbjct: 271 GHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHA 330

Query: 348 T--DSVDSITLVSILTASGELAA---------LEICL--QLHGIAFEAGFPRYRSVQNCL 394
               + D+++L   +   G +           L  C    LH  A + G   +  V N L
Sbjct: 331 AAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPSLHPFAIKFGLDTHVFVCNTL 390

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
           + +Y K G +  A  VF EM   +D V++N ++ G    G    AL L+  M   G
Sbjct: 391 LDAYCKHGLLAAARRVFLEM-HDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAG 445


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  285 bits (730), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 172/555 (30%), Positives = 296/555 (53%), Gaps = 24/555 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           + Y  + L++ Y +S K+  AE +F  +  ++ VS++ +I G    GF +++++ F+ M 
Sbjct: 295 ETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQ 354

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------- 106
              L P+  T+  +L A A +  L     +H   +K G+ +D+                 
Sbjct: 355 RDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVE 414

Query: 107 -----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                F   +   +V  N ++  +        +  +F   +  G++PN  T  +++R C 
Sbjct: 415 TAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCT 474

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
           +LG+  L E IH   IK G  L+V V + ++DMY+    L  A++I R +   DV+SWT 
Sbjct: 475 SLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTA 534

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+  +V  +   +AL++F EM    I  D +   + IS  A +  L++G+Q+HAQ    G
Sbjct: 535 MIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAG 594

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
             ++L ++N++I++Y++CG +  +   F +I +K+ +SW +++SG  Q+G   EAL  F+
Sbjct: 595 FGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFV 654

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +M + + + V+  T  S ++A+  LA ++   Q+H +  + G+   R V N LIS Y+K 
Sbjct: 655 RMLRTEAE-VNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKS 713

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G++  A+  F +M   R+V+SWN +I GY  +G G  AL L+ +M   G +P+  T++ +
Sbjct: 714 GSISDAWREFNDMS-ERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGV 772

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L+AC H GL  +GL  F  M + + + P  EHY CVVDLL RAG L  A     ++    
Sbjct: 773 LSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPA 832

Query: 522 GPNIWRALLSGCVLH 536
              IWR LLS CV+H
Sbjct: 833 DAMIWRTLLSACVIH 847



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 150/566 (26%), Positives = 256/566 (45%), Gaps = 34/566 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           +P     L+ NYF+ G    A  +FDE   ++V SW+ +IH +     + +    F  M+
Sbjct: 92  EPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRML 151

Query: 64  LSGLLPNSFTMVGVLVAAAGLQ-NLELARSIHGLMVKFGLES---------DLFEGLKNP 113
             G+ PN +T  GVL A  G        + +H     +G +S         DL+   KN 
Sbjct: 152 AEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYS--KNG 209

Query: 114 YLVSCN---------------AIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
           Y+ S                 A+++G   N L ++A+LLF     S + P    + +V+ 
Sbjct: 210 YIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLS 269

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
               +    L E +H L IK G   +  V N ++ +YS    L +A +IF  M  +D +S
Sbjct: 270 ASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVS 329

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           +  ++   V   ++  AL++F +M++  +  D + + +L+S  A +G L +G QLH+  +
Sbjct: 330 YNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAI 389

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
             G+ +++ L  S++ +YSKC D++++   F     +++V W  ++  Y Q     ++  
Sbjct: 390 KAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFE 449

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
            F +M+ E     +  T  SIL     L AL +  Q+H    + GF     V + LI  Y
Sbjct: 450 IFRQMQMEGMIP-NQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMY 508

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
           +K G + LA  +   +    DVVSW  +I GY  +     AL L+ +M   G   D+  +
Sbjct: 509 AKYGQLALALRILRRLP-EDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGF 567

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
            S ++AC        G  I  Q                ++ L AR G + +A     K+ 
Sbjct: 568 ASAISACAGIRALRQGQQIHAQSYAAG-FGADLSINNALISLYARCGRIQEAYLAFEKI- 625

Query: 519 EGMGPNI-WRALLSGCVLHVGRFQDA 543
            G   NI W +L+SG +   G F++A
Sbjct: 626 -GDKNNISWNSLVSG-LAQSGYFEEA 649



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 122/480 (25%), Positives = 226/480 (47%), Gaps = 33/480 (6%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           LL  Y K   ++ A   F     +N+V W++++  Y        S + F  M + G++PN
Sbjct: 403 LLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPN 462

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF----------------------E 108
            FT   +L     L  L L   IH  ++K G + +++                       
Sbjct: 463 QFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILR 522

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            L    +VS  A++AG++ + +F +A+ LF      G+  + +   + I  C  + +   
Sbjct: 523 RLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQ 582

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
            + IH  +   G   D+S+NN+++ +Y+    +  A   F ++  K+ ISW  ++     
Sbjct: 583 GQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQ 642

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
             Y  +AL++F  M ++    +     + IS  A L ++K+G+Q+H+ V+  G  SE  +
Sbjct: 643 SGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREV 702

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
           SNS+I++Y+K G +  +   FN ++E++++SW A+I+GY Q+GC  EAL  F +M+    
Sbjct: 703 SNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGI 762

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN-----CLISSYSKCGN 403
              + +T V +L+A   +  ++  L      FE+ F  +  V       C++    + G 
Sbjct: 763 -MPNHVTFVGVLSACSHIGLVKEGLDY----FESMFKIHDLVPKSEHYVCVVDLLGRAGQ 817

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           +D A    +EM    D + W T++    ++ + E      H + E  E  DS+TY+ I N
Sbjct: 818 LDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLEL-EPEDSATYVLISN 876



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 104/353 (29%), Positives = 171/353 (48%), Gaps = 5/353 (1%)

Query: 133 QAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVL 192
           + + L NF    G+  N    L ++ GC+  GS      +H    K G   +  + +S++
Sbjct: 41  KRIQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLV 100

Query: 193 DMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTV 252
           D Y    D   A+++F E   + V SW +M+ +FV  +       +FR M    I  +  
Sbjct: 101 DNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGY 160

Query: 253 ALLNLISVNAILGDLKRG--KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFN 310
               ++    + GD+     KQ+H++    G  S   ++N +I +YSK G ++S++ VFN
Sbjct: 161 TFAGVLKA-CVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFN 219

Query: 311 QITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALE 370
            I  K +V+W A+ISG  QNG   EA+  F  M   +      + L S+L+AS ++   E
Sbjct: 220 CICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYV-LSSVLSASTKIQLFE 278

Query: 371 ICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGY 430
           +  QLH +  + GF     V N L++ YS+   +  A  +F  M   RD VS+N++I G 
Sbjct: 279 LGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMN-SRDGVSYNSLISGL 337

Query: 431 GVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIE 483
              G  + AL L+ KM      PD  T  S+L+AC   G  + G+ + +  I+
Sbjct: 338 VQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIK 390



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 134/290 (46%), Gaps = 22/290 (7%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           ++ Y  S L+  Y K G++  A  +   +PE +VVSW+ +I GY  +    ++++ F  M
Sbjct: 496 LNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEM 555

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------- 106
              G+  ++      + A AG++ L   + IH      G  +DL                
Sbjct: 556 EYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRI 615

Query: 107 ------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                 FE + +   +S N++V+G   +  F++A+ +F     +    N  T  + I   
Sbjct: 616 QEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAA 675

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
            +L +    + IH + +K G   +  V+NS++ +Y+    +  A + F +M  ++VISW 
Sbjct: 676 ASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWN 735

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG 270
            M+  +       +AL++F EM+   I+ + V  + ++S  + +G +K G
Sbjct: 736 AMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEG 785


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  285 bits (730), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 178/619 (28%), Positives = 309/619 (49%), Gaps = 57/619 (9%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  + LL+ Y +S  +++A  LFDE+P+ N +S+  +  GYS +    +++     +
Sbjct: 68  LDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSRDHQFHQALHFILRI 127

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPY------ 114
              G   N F    +L     +    L  ++H  + K G  +D F G  L + Y      
Sbjct: 128 FKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFVGTALIDAYSVRGNV 187

Query: 115 --------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                         +VS   +VA +  N  +++++ LFN  R  G  PN  T+   ++ C
Sbjct: 188 DVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKSC 247

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
           + L +  + + +HG  +K     D+ V  ++L++Y+   ++  A ++F EM   D+I W+
Sbjct: 248 LGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWS 307

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+  +   + + +AL +F  MR++ ++ +     +++   A    L  GKQ+H+ V+  
Sbjct: 308 LMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKF 367

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           GL S + +SN+I+ +Y+KCG++++S  +F ++ +++ V+W  II GYVQ G    A+N F
Sbjct: 368 GLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLF 427

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
             M +      + +T  S+L AS  LAALE  LQ+H +  +  + +   V N LI  Y+K
Sbjct: 428 THMLEHDMQPTE-VTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAK 486

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CG ++ A + F++M   RD VSWN +I GY ++G    AL L+  M  T   P+  T++ 
Sbjct: 487 CGRINDARLTFDKMN-KRDEVSWNAMICGYSMHGMSMEALNLFDMMQHTDCKPNKLTFVG 545

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           +L+AC +AGL   G   F  M ++  +KP  EHY C+V LL R G   +A  L G++   
Sbjct: 546 VLSACSNAGLLYKGQAHFESMSKDYDIKPCIEHYTCMVWLLGRLGRFDEAMKLIGEIAYQ 605

Query: 521 MGPNIWRALLSGCVLH---------------------------------VGRFQDAEALR 547
               +WRALL  CV+H                                  GR+ +   +R
Sbjct: 606 PSVMVWRALLGACVIHKKVDLGRVCAQHVLEMEPHDDATHVLLSNMYATAGRWDNVAFVR 665

Query: 548 SGSQKKGIIKIPGISFLNS 566
              QKK + K PG+S++ +
Sbjct: 666 KYMQKKKVRKEPGLSWVEN 684



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 97/196 (49%), Gaps = 2/196 (1%)

Query: 270 GKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQ 329
           GK LH  ++  G   +L   N ++  Y +   L  +  +F+++ + + +S+  +  GY +
Sbjct: 54  GKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSR 113

Query: 330 NGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS 389
           +    +AL+  +++ +E  + V+     ++L     +    +C  LH   ++ G      
Sbjct: 114 DHQFHQALHFILRIFKEGHE-VNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAF 172

Query: 390 VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
           V   LI +YS  GNVD+A  VF+++   +D+VSW  ++  Y  N   E +L L+++M   
Sbjct: 173 VGTALIDAYSVRGNVDVARHVFDDIC-CKDMVSWTGMVACYAENCFYEESLQLFNQMRIM 231

Query: 450 GEVPDSSTYLSILNAC 465
           G  P++ T    L +C
Sbjct: 232 GYKPNNFTISGALKSC 247


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  285 bits (729), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 172/555 (30%), Positives = 296/555 (53%), Gaps = 24/555 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           + Y  + L++ Y +S K+  AE +F  +  ++ VS++ +I G    GF +++++ F+ M 
Sbjct: 295 ETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQ 354

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------- 106
              L P+  T+  +L A A +  L     +H   +K G+ +D+                 
Sbjct: 355 RDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVE 414

Query: 107 -----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                F   +   +V  N ++  +        +  +F   +  G++PN  T  +++R C 
Sbjct: 415 TAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCT 474

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
           +LG+  L E IH   IK G  L+V V + ++DMY+    L  A++I R +   DV+SWT 
Sbjct: 475 SLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTA 534

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+  +V  +   +AL++F EM    I  D +   + IS  A +  L++G+Q+HAQ    G
Sbjct: 535 MIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAG 594

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
             ++L ++N++I++Y++CG +  +   F +I +K+ +SW +++SG  Q+G   EAL  F+
Sbjct: 595 FGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFV 654

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +M + + + V+  T  S ++A+  LA ++   Q+H +  + G+   R V N LIS Y+K 
Sbjct: 655 RMLRTEAE-VNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKS 713

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G++  A+  F +M   R+V+SWN +I GY  +G G  AL L+ +M   G +P+  T++ +
Sbjct: 714 GSISDAWREFNDMS-ERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGV 772

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L+AC H GL  +GL  F  M + + + P  EHY CVVDLL RAG L  A     ++    
Sbjct: 773 LSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPA 832

Query: 522 GPNIWRALLSGCVLH 536
              IWR LLS CV+H
Sbjct: 833 DAMIWRTLLSACVIH 847



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 150/566 (26%), Positives = 256/566 (45%), Gaps = 34/566 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           +P     L+ NYF+ G    A  +FDE   ++V SW+ +IH +     + +    F  M+
Sbjct: 92  EPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRML 151

Query: 64  LSGLLPNSFTMVGVLVAAAGLQ-NLELARSIHGLMVKFGLES---------DLFEGLKNP 113
             G+ PN +T  GVL A  G        + +H     +G +S         DL+   KN 
Sbjct: 152 AEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYS--KNG 209

Query: 114 YLVSCN---------------AIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
           Y+ S                 A+++G   N L ++A+LLF     S + P    + +V+ 
Sbjct: 210 YIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLS 269

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
               +    L E +H L IK G   +  V N ++ +YS    L +A +IF  M  +D +S
Sbjct: 270 ASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVS 329

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           +  ++   V   ++  AL++F +M++  +  D + + +L+S  A +G L +G QLH+  +
Sbjct: 330 YNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAI 389

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
             G+ +++ L  S++ +YSKC D++++   F     +++V W  ++  Y Q     ++  
Sbjct: 390 KAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFE 449

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
            F +M+ E     +  T  SIL     L AL +  Q+H    + GF     V + LI  Y
Sbjct: 450 IFRQMQMEGMIP-NQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMY 508

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
           +K G + LA  +   +    DVVSW  +I GY  +     AL L+ +M   G   D+  +
Sbjct: 509 AKYGQLALALRILRRLP-EDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGF 567

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
            S ++AC        G  I  Q                ++ L AR G + +A     K+ 
Sbjct: 568 ASAISACAGIRALRQGQQIHAQSYAAG-FGADLSINNALISLYARCGRIQEAYLAFEKI- 625

Query: 519 EGMGPNI-WRALLSGCVLHVGRFQDA 543
            G   NI W +L+SG +   G F++A
Sbjct: 626 -GDKNNISWNSLVSG-LAQSGYFEEA 649



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 122/480 (25%), Positives = 226/480 (47%), Gaps = 33/480 (6%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           LL  Y K   ++ A   F     +N+V W++++  Y        S + F  M + G++PN
Sbjct: 403 LLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPN 462

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF----------------------E 108
            FT   +L     L  L L   IH  ++K G + +++                       
Sbjct: 463 QFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILR 522

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            L    +VS  A++AG++ + +F +A+ LF      G+  + +   + I  C  + +   
Sbjct: 523 RLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQ 582

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
            + IH  +   G   D+S+NN+++ +Y+    +  A   F ++  K+ ISW  ++     
Sbjct: 583 GQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQ 642

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
             Y  +AL++F  M ++    +     + IS  A L ++K+G+Q+H+ V+  G  SE  +
Sbjct: 643 SGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREV 702

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
           SNS+I++Y+K G +  +   FN ++E++++SW A+I+GY Q+GC  EAL  F +M+    
Sbjct: 703 SNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGI 762

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN-----CLISSYSKCGN 403
              + +T V +L+A   +  ++  L      FE+ F  +  V       C++    + G 
Sbjct: 763 -MPNHVTFVGVLSACSHIGLVKEGLDY----FESMFKIHDLVPKSEHYVCVVDLLGRAGQ 817

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           +D A    +EM    D + W T++    ++ + E      H + E  E  DS+TY+ I N
Sbjct: 818 LDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLEL-EPEDSATYVLISN 876



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 104/353 (29%), Positives = 171/353 (48%), Gaps = 5/353 (1%)

Query: 133 QAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVL 192
           + + L NF    G+  N    L ++ GC+  GS      +H    K G   +  + +S++
Sbjct: 41  KRIQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLV 100

Query: 193 DMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTV 252
           D Y    D   A+++F E   + V SW +M+ +FV  +       +FR M    I  +  
Sbjct: 101 DNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGY 160

Query: 253 ALLNLISVNAILGDLKRG--KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFN 310
               ++    + GD+     KQ+H++    G  S   ++N +I +YSK G ++S++ VFN
Sbjct: 161 TFAGVLKA-CVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFN 219

Query: 311 QITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALE 370
            I  K +V+W A+ISG  QNG   EA+  F  M   +      + L S+L+AS ++   E
Sbjct: 220 CICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYV-LSSVLSASTKIQLFE 278

Query: 371 ICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGY 430
           +  QLH +  + GF     V N L++ YS+   +  A  +F  M   RD VS+N++I G 
Sbjct: 279 LGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMN-SRDGVSYNSLISGL 337

Query: 431 GVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIE 483
              G  + AL L+ KM      PD  T  S+L+AC   G  + G+ + +  I+
Sbjct: 338 VQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIK 390



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 134/290 (46%), Gaps = 22/290 (7%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           ++ Y  S L+  Y K G++  A  +   +PE +VVSW+ +I GY  +    ++++ F  M
Sbjct: 496 LNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEM 555

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------- 106
              G+  ++      + A AG++ L   + IH      G  +DL                
Sbjct: 556 EYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRI 615

Query: 107 ------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                 FE + +   +S N++V+G   +  F++A+ +F     +    N  T  + I   
Sbjct: 616 QEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAA 675

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
            +L +    + IH + +K G   +  V+NS++ +Y+    +  A + F +M  ++VISW 
Sbjct: 676 ASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWN 735

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG 270
            M+  +       +AL++F EM+   I+ + V  + ++S  + +G +K G
Sbjct: 736 AMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEG 785


>gi|357468777|ref|XP_003604673.1| hypothetical protein MTR_4g015760 [Medicago truncatula]
 gi|355505728|gb|AES86870.1| hypothetical protein MTR_4g015760 [Medicago truncatula]
          Length = 838

 Score =  285 bits (729), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 173/562 (30%), Positives = 292/562 (51%), Gaps = 31/562 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  +KL   Y +   I  A  LF E P + V  W+ ++  Y   G   +++  F  M 
Sbjct: 170 DSFIVTKLNVLYARYASIHHAHKLFQETPHRTVYLWNALLRSYCFEGEWVETLSLFRQMN 229

Query: 64  -LSGL----LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--------- 109
            +S +     P+++++   L + AGL+ L L + IHG + K  ++ D+F G         
Sbjct: 230 NVSSVSIEERPDNYSVSIALKSCAGLRKLLLGKVIHGFLKKVRIDGDMFVGSALIDLYTK 289

Query: 110 -------------LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLV-PNAVTMLT 155
                           P +V   +I++G+  +   + A+  F+    S  V P+ VT+++
Sbjct: 290 CGQMNDAVKVFMEYPKPDVVLWTSIISGYEQSGSPELALAFFSRMVVSEKVSPDPVTLVS 349

Query: 156 VIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKD 215
           V   C  L +  L   +HG   + GL   + + NS+L +Y     +  A  +FREM  KD
Sbjct: 350 VASACAQLSNFKLGRSVHGFVKRKGLDNKLCLANSLLHLYGKTGSIKNASNLFREMSDKD 409

Query: 216 VISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
           +ISW+ M+  + D     D L +F EM   RI  + V +++++   A + +L+ G ++H 
Sbjct: 410 IISWSTMVACYADNGAETDVLDLFNEMLDKRIKPNWVTVVSVLRACACISNLEEGMKIHE 469

Query: 276 QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
             V  G + E  +S +++ MY KC   + +  +FN++ +K +++W  + SGY  NG   E
Sbjct: 470 LAVNYGFEMETTVSTALMDMYMKCFSPEKAVDLFNRMPKKDVIAWAVLFSGYADNGMVHE 529

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLI 395
           ++  F  M    T   D+I LV ILT   EL  L+  + LH    + GF   + +   LI
Sbjct: 530 SMWVFRNMLSSGTRP-DAIALVKILTTISELGILQQAVCLHAFVIKNGFENNQFIGASLI 588

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV-PD 454
             Y+KC +++ A  VF+ M + +DVV+W++II  YG +G GE AL L+++M    +  P+
Sbjct: 589 EVYAKCSSIEDANKVFKGMTY-KDVVTWSSIIAAYGFHGQGEEALKLFYQMANHSDTKPN 647

Query: 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLA 514
           + T++SIL+AC H+GL  +G+ +F+ M+ + K+KP+ EHY  +VDLL R G L  A  + 
Sbjct: 648 NVTFISILSACSHSGLIKEGINMFDIMVNKYKLKPNSEHYAIMVDLLGRMGELDMALDVI 707

Query: 515 GKLLEGMGPNIWRALLSGCVLH 536
             +    GP+IW ALL  C +H
Sbjct: 708 NNMPMQAGPDIWGALLGACRIH 729



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 152/311 (48%), Gaps = 6/311 (1%)

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           +H   +K GL+ D  +   +  +Y+    +  A ++F+E   + V  W  ++  +     
Sbjct: 158 LHSQCLKAGLVHDSFIVTKLNVLYARYASIHHAHKLFQETPHRTVYLWNALLRSYCFEGE 217

Query: 232 AGDALKIFREMRKSRIIC-----DTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
             + L +FR+M     +      D  ++   +   A L  L  GK +H  +    +  ++
Sbjct: 218 WVETLSLFRQMNNVSSVSIEERPDNYSVSIALKSCAGLRKLLLGKVIHGFLKKVRIDGDM 277

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            + +++I +Y+KCG ++ +  VF +  +  +V WT+IISGY Q+G    AL  F +M   
Sbjct: 278 FVGSALIDLYTKCGQMNDAVKVFMEYPKPDVVLWTSIISGYEQSGSPELALAFFSRMVVS 337

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
           +  S D +TLVS+ +A  +L+  ++   +HG     G      + N L+  Y K G++  
Sbjct: 338 EKVSPDPVTLVSVASACAQLSNFKLGRSVHGFVKRKGLDNKLCLANSLLHLYGKTGSIKN 397

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           A  +F EM   +D++SW+T++  Y  NG     L L+++M +    P+  T +S+L AC 
Sbjct: 398 ASNLFREMSD-KDIISWSTMVACYADNGAETDVLDLFNEMLDKRIKPNWVTVVSVLRACA 456

Query: 467 HAGLTNDGLVI 477
                 +G+ I
Sbjct: 457 CISNLEEGMKI 467


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  285 bits (728), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 177/595 (29%), Positives = 294/595 (49%), Gaps = 66/595 (11%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           ID Y  + L++ Y K G +   E +F  +  ++VV+WS +I  Y+ N    K+   F  M
Sbjct: 111 IDIYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERM 170

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
             + + PN  T + +L A      LE AR IH ++   G+E+D                 
Sbjct: 171 KDANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEI 230

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +F+ +K   +VS  AI+     ++   +A  L+     +G+ PNAVT ++++  C
Sbjct: 231 SLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSC 290

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMY---SCLMDLDAAIQIFREMECKDVI 217
               +      IH    + GL  DV V N+++ MY   +C+ D   A + F  M  +DVI
Sbjct: 291 NTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQD---ARETFDRMSKRDVI 347

Query: 218 SWTRMMGLFV-----DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQ 272
           SW+ M+  +      D E   +  ++   MR+  +  + V  ++++   ++ G L++G+Q
Sbjct: 348 SWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQ 407

Query: 273 LHAQVVLGGLQSELRLSNSIIAMYS-------------------------------KCGD 301
           +HA++   G +S+  L  +I  MY+                               KCGD
Sbjct: 408 IHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGD 467

Query: 302 LDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILT 361
           L S+  VF++++ +++VSW  +I+GY Q+G   +       M+ E     D +T++SIL 
Sbjct: 468 LTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQP-DRVTIISILE 526

Query: 362 ASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVV 421
           A G L+ALE    +H  A + G      V   LI  YSKCG V  A  VF+++   RD V
Sbjct: 527 ACGALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISN-RDTV 585

Query: 422 SWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQM 481
           +WN ++ GYG +G G  A+ L+ +M +    P+  T+ ++++ACG AGL  +G  IF  M
Sbjct: 586 AWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIM 645

Query: 482 IEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
            E+ ++KP ++HYGC+VDLL RAG L +A     ++      ++W ALL  C  H
Sbjct: 646 QEDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGACKSH 700



 Score =  184 bits (468), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 129/537 (24%), Positives = 252/537 (46%), Gaps = 69/537 (12%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS---HMML 64
           ++ L++ Y K G+I  A  +F ++ E+NVVSW+ +I     N  H K  +AF     M+ 
Sbjct: 217 ATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQA---NAQHRKLNEAFELYEKMLQ 273

Query: 65  SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL------------------ 106
           +G+ PN+ T V +L +    + L   R IH  + + GLE+D+                  
Sbjct: 274 AGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQD 333

Query: 107 ----FEGLKNPYLVSCNAIVAGFI-----NNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
               F+ +    ++S +A++AG+      + +   +   L    R  G+ PN VT ++++
Sbjct: 334 ARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSIL 393

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
           + C   G+      IH    K+G   D S+  ++ +MY+    +  A Q+F +ME K+V+
Sbjct: 394 KACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVV 453

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIIC---------------------------- 249
           +W  ++ +++       A K+F EM    ++                             
Sbjct: 454 AWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEG 513

Query: 250 ---DTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSR 306
              D V +++++     L  L+RGK +HA+ V  GL+S+  ++ S+I MYSKCG++  +R
Sbjct: 514 FQPDRVTIISILEACGALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEAR 573

Query: 307 SVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGEL 366
           +VF++I+ +  V+W A+++GY Q+G   EA++ F +M +E+    + IT  ++++A G  
Sbjct: 574 TVFDKISNRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPP-NEITFTAVISACGRA 632

Query: 367 AALEICLQLHGIAFEAGFPRYRSVQN--CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWN 424
             ++   ++  I  +  F      Q+  C++    + G +  A    + M    D+  W+
Sbjct: 633 GLVQEGREIFRI-MQEDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWH 691

Query: 425 TIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQM 481
            ++     + + + A    H +    E  ++S Y+++ N    AG  +D   +   M
Sbjct: 692 ALLGACKSHDNVQLAEWAAHHILRL-EPSNASVYVTLSNIYAQAGRWDDSTKVRKVM 747



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 134/532 (25%), Positives = 255/532 (47%), Gaps = 68/532 (12%)

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPY--------- 114
           GLL NS T   ++   A L+  E  + +H  + + GL  D++ G  L N Y         
Sbjct: 73  GLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLINFYSKFGDVASV 132

Query: 115 -----------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
                      +V+ ++++A +  N    +A   F   + + + PN +T L++++ C   
Sbjct: 133 EQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKACNNY 192

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
                   IH +    G+  DV+V  +++ MYS   ++  A +IF++M+ ++V+SWT ++
Sbjct: 193 SMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAII 252

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
                     +A +++ +M ++ I  + V  ++L++       L RG+++H+ +   GL+
Sbjct: 253 QANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLE 312

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA-REALNQFI- 341
           +++ ++N++I MY KC  +  +R  F++++++ ++SW+A+I+GY Q+G   +E+L++   
Sbjct: 313 TDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQ 372

Query: 342 ---KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
              +MR+E     + +T +SIL A     ALE   Q+H    + GF   RS+Q  + + Y
Sbjct: 373 LLERMRREGVFP-NKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMY 431

Query: 399 SKCGNVDLAYIVFEEM------------------GFL------------RDVVSWNTIIY 428
           +KCG++  A  VF +M                  G L            R+VVSWN +I 
Sbjct: 432 AKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIA 491

Query: 429 GYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMI----EE 484
           GY  +G       L   M   G  PD  T +SIL ACG       G ++  + +    E 
Sbjct: 492 GYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERGKLVHAEAVKLGLES 551

Query: 485 NKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
           + V  +      ++ + ++ G +++A  +  K +       W A+L+G   H
Sbjct: 552 DTVVATS-----LIGMYSKCGEVTEARTVFDK-ISNRDTVAWNAMLAGYGQH 597



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 113/431 (26%), Positives = 211/431 (48%), Gaps = 10/431 (2%)

Query: 131 FQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNS 190
            ++A+ L    +  GL+ N+ T   +I  C  L      +++H    +LGL +D+ + NS
Sbjct: 59  LKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNS 118

Query: 191 VLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICD 250
           +++ YS   D+ +  Q+FR M  +DV++W+ M+  +    +   A   F  M+ + I  +
Sbjct: 119 LINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPN 178

Query: 251 TVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFN 310
            +  L+++        L++ +++H  V   G+++++ ++ ++I MYSKCG++  +  +F 
Sbjct: 179 RITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQ 238

Query: 311 QITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALE 370
           ++ E+++VSWTAII    Q+    EA   + KM Q    S +++T VS+L +     AL 
Sbjct: 239 KMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGI-SPNAVTFVSLLNSCNTPEALN 297

Query: 371 ICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGY 430
              ++H    E G      V N LI+ Y KC  +  A   F+ M   RDV+SW+ +I GY
Sbjct: 298 RGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMS-KRDVISWSAMIAGY 356

Query: 431 GVNGHGET-----ALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEEN 485
             +G+ +         L  +M   G  P+  T++SIL AC   G    G  I  + I + 
Sbjct: 357 AQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAE-ISKV 415

Query: 486 KVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEA 545
             +  +     + ++ A+ G + +A  +  K +E      W +LL+   +  G    AE 
Sbjct: 416 GFESDRSLQTAIFNMYAKCGSIYEAEQVFSK-MENKNVVAWASLLT-MYIKCGDLTSAEK 473

Query: 546 LRSGSQKKGII 556
           + S    + ++
Sbjct: 474 VFSEMSTRNVV 484


>gi|222626149|gb|EEE60281.1| hypothetical protein OsJ_13335 [Oryza sativa Japonica Group]
          Length = 1135

 Score =  285 bits (728), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 171/551 (31%), Positives = 281/551 (50%), Gaps = 33/551 (5%)

Query: 10  KLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLP 69
           K L+   KSG++ +A +LFD +P KNVV+W+ V+ GY+ NG  E ++  F+ M+ SG+ P
Sbjct: 53  KRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAP 112

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LF 107
           N F     LVA A L  L     +H L V+ G   D                      +F
Sbjct: 113 NDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVF 172

Query: 108 EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRA 167
           + + +P +V   ++++ F  N  F+ A          GL PN  TM T++  C     R 
Sbjct: 173 DRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTAC----PRV 228

Query: 168 LCELIHGLTIK-LGL-ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
           L + IHG  IK +GL    V  + +++D YS   +   A  +F  + CK+V+SW  MM L
Sbjct: 229 LGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQL 288

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           ++      +AL++F +M    +  +  AL  ++      G +  G+QLH   +   L ++
Sbjct: 289 YIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGA---CGSIGLGRQLHCSAIKHDLITD 345

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           +R+SN++++MY + G ++   ++ N+I    LVSWT  IS   QNG   +A+    +M  
Sbjct: 346 IRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHS 405

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
           E   + +     S+L++  ++A+L+  +Q H +A + G        N LI+ YSKCG + 
Sbjct: 406 EGF-TPNGYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMG 464

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            A + F+ M    DV SWN++I+G+  +G    AL ++ KM   G  PD ST+L +L  C
Sbjct: 465 SARLAFDVM-HTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGC 523

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI 525
            H+G+  +G + F  MI++    P+  HY C++D+L R G   +A  +   +       I
Sbjct: 524 NHSGMVEEGELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALI 583

Query: 526 WRALLSGCVLH 536
           W+ LL+ C LH
Sbjct: 584 WKTLLASCKLH 594



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 127/507 (25%), Positives = 226/507 (44%), Gaps = 38/507 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  S L+  Y + G +  A+ +FD +   +VV ++ +I  +  NG  E + +A   M+
Sbjct: 148 DAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQML 207

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK------------------------ 99
             GL PN  TM  +L A   +    L + IHG ++K                        
Sbjct: 208 KQGLKPNEHTMTTILTACPRV----LGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGE 263

Query: 100 FGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
           F L   +F+ L    +VS  +++  +I +   ++A+ +F      G+ PN   +  V+  
Sbjct: 264 FKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGA 323

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C   GS  L   +H   IK  LI D+ V+N++L MY     ++    +  ++E  D++SW
Sbjct: 324 C---GSIGLGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSW 380

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           T  +       +   A+ +  +M       +  A  +++S  A +  L +G Q H   + 
Sbjct: 381 TTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLALK 440

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G  SE+   N++I MYSKCG + S+R  F+ +    + SW ++I G+ Q+G A +AL  
Sbjct: 441 LGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIHGHAQHGDANKALEV 500

Query: 340 FIKMRQEKTDSVDSITLVSILTA---SGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
           F KMR       DS T + +L     SG +   E+  +L  +  +  F    S   C+I 
Sbjct: 501 FSKMRSNGIKPDDS-TFLGVLMGCNHSGMVEEGELFFRL--MIDQYSFTPAPSHYACMID 557

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
              + G  D A  +  +M F  D + W T++    ++ + +       ++ E  +  DS+
Sbjct: 558 MLGRNGRFDEALRMINDMPFEPDALIWKTLLASCKLHRNLDIGKLAADRLMELSDR-DSA 616

Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIE 483
           +Y+ + N     G   D   +  +M E
Sbjct: 617 SYVLMSNIYAMHGEWEDARKVRRRMDE 643


>gi|413946224|gb|AFW78873.1| hypothetical protein ZEAMMB73_227843 [Zea mays]
          Length = 778

 Score =  285 bits (728), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 167/555 (30%), Positives = 299/555 (53%), Gaps = 26/555 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L++ Y   G+  +A  +FDE+P ++VVSW+ ++     NG  E + +A   MM
Sbjct: 153 DVFAGNTLVTFYAVCGRAADARRVFDEMPARDVVSWNSLVSALLTNGMLEDAKRAVVGMM 212

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES------------------- 104
            SG+  N  ++V +L A    ++      +HGL++KFGL S                   
Sbjct: 213 RSGVPVNVASLVSILPACGTERDEGFGLCVHGLVLKFGLNSVVNLGNALVDMYGKFGDLE 272

Query: 105 ---DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +F G++    VS N+ +  F +    +  + +F       + P +VT+ +++   V
Sbjct: 273 SSMHVFNGMQEKNEVSWNSAIGCFAHAGFHEDVLEMFRLMSEHDVTPGSVTLSSLLPALV 332

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            LG   L + +HG +I+  +  D+ + N+++DMY+     + A  IF  +E ++V+SW  
Sbjct: 333 DLGYFHLGKELHGYSIRRAVESDIFIANTLMDMYAKFGCSEKASAIFENIEVRNVVSWNA 392

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+          +A ++  EM+K+    ++  L+NL+   + +  +K GKQ+HA  +   
Sbjct: 393 MIANLTQNGAEAEAFRLVIEMQKNGECPNSFTLVNLLPACSRVASVKMGKQIHAWSIRRS 452

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           L S+L +SN++I +Y+KCG L+ +R +F++ +EK  VS+  +I GY Q+ C  E+L+ F 
Sbjct: 453 LMSDLFVSNALIDVYAKCGQLNLARYIFDR-SEKDGVSYNTLIVGYSQSQCCFESLHLFQ 511

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +MR    +  D+++ +  L+A   L+A +   ++HG+  +     +  + N L+  Y+K 
Sbjct: 512 QMRLAGIEH-DAVSFMGCLSACSNLSAFKQGKEIHGVLVKRLLDSHPFLANSLLDVYTKG 570

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G +D A  +F  +   +DV SWNT+I GYG++G  + A  L+  M + G   D  +Y+++
Sbjct: 571 GMLDTASKIFNRIT-QKDVASWNTMILGYGMHGQIDVAFELFDLMKDDGIEYDHVSYIAV 629

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L+ C H GL + G   F+QMI +N +KP Q HY C+VDLL RAG LS+++ +   +    
Sbjct: 630 LSVCSHGGLVDRGKKYFSQMIAQN-IKPQQMHYACMVDLLGRAGQLSESAEIIRNMPFRA 688

Query: 522 GPNIWRALLSGCVLH 536
             ++W ALL  C +H
Sbjct: 689 NSDVWGALLGSCRIH 703



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 119/487 (24%), Positives = 233/487 (47%), Gaps = 27/487 (5%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+  Y K G ++ + ++F+ + EKN VSW+  I  ++  GFHE  ++ F  M    + P 
Sbjct: 261 LVDMYGKFGDLESSMHVFNGMQEKNEVSWNSAIGCFAHAGFHEDVLEMFRLMSEHDVTPG 320

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF----------------------E 108
           S T+  +L A   L    L + +HG  ++  +ESD+F                      E
Sbjct: 321 SVTLSSLLPALVDLGYFHLGKELHGYSIRRAVESDIFIANTLMDMYAKFGCSEKASAIFE 380

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            ++   +VS NA++A    N    +A  L    + +G  PN+ T++ ++  C  + S  +
Sbjct: 381 NIEVRNVVSWNAMIANLTQNGAEAEAFRLVIEMQKNGECPNSFTLVNLLPACSRVASVKM 440

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
            + IH  +I+  L+ D+ V+N+++D+Y+    L+ A  IF   E KD +S+  ++  +  
Sbjct: 441 GKQIHAWSIRRSLMSDLFVSNALIDVYAKCGQLNLARYIFDRSE-KDGVSYNTLIVGYSQ 499

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
            +   ++L +F++MR + I  D V+ +  +S  + L   K+GK++H  +V   L S   L
Sbjct: 500 SQCCFESLHLFQQMRLAGIEHDAVSFMGCLSACSNLSAFKQGKEIHGVLVKRLLDSHPFL 559

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
           +NS++ +Y+K G LD++  +FN+IT+K + SW  +I GY  +G    A   F  M+ +  
Sbjct: 560 ANSLLDVYTKGGMLDTASKIFNRITQKDVASWNTMILGYGMHGQIDVAFELFDLMKDDGI 619

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
           +  D ++ +++L+       ++   +             +    C++    + G +  + 
Sbjct: 620 E-YDHVSYIAVLSVCSHGGLVDRGKKYFSQMIAQNIKPQQMHYACMVDLLGRAGQLSESA 678

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL-NACGH 467
            +   M F  +   W  ++    ++G  E A      + E    P++S Y ++L N    
Sbjct: 679 EIIRNMPFRANSDVWGALLGSCRIHGDIELARLAAEHLFELK--PENSGYYTLLRNMYSE 736

Query: 468 AGLTNDG 474
           +G+ N+ 
Sbjct: 737 SGMWNEA 743



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 176/370 (47%), Gaps = 25/370 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + ++ L+  Y K G  ++A  +F+ I  +NVVSW+ +I   + NG   ++ +    M 
Sbjct: 355 DIFIANTLMDMYAKFGCSEKASAIFENIEVRNVVSWNAMIANLTQNGAEAEAFRLVIEMQ 414

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPYL------ 115
            +G  PNSFT+V +L A + + ++++ + IH   ++  L SDLF    L + Y       
Sbjct: 415 KNGECPNSFTLVNLLPACSRVASVKMGKQIHAWSIRRSLMSDLFVSNALIDVYAKCGQLN 474

Query: 116 -------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA 162
                        VS N ++ G+  ++   +++ LF   R +G+  +AV+ +  +  C  
Sbjct: 475 LARYIFDRSEKDGVSYNTLIVGYSQSQCCFESLHLFQQMRLAGIEHDAVSFMGCLSACSN 534

Query: 163 LGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
           L +    + IHG+ +K  L     + NS+LD+Y+    LD A +IF  +  KDV SW  M
Sbjct: 535 LSAFKQGKEIHGVLVKRLLDSHPFLANSLLDVYTKGGMLDTASKIFNRITQKDVASWNTM 594

Query: 223 MGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL 282
           +  +        A ++F  M+   I  D V+ + ++SV +  G + RGK+  +Q++   +
Sbjct: 595 ILGYGMHGQIDVAFELFDLMKDDGIEYDHVSYIAVLSVCSHGGLVDRGKKYFSQMIAQNI 654

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVS-WTAIISGYVQNG---CAREALN 338
           + +      ++ +  + G L  S  +   +  ++    W A++     +G    AR A  
Sbjct: 655 KPQQMHYACMVDLLGRAGQLSESAEIIRNMPFRANSDVWGALLGSCRIHGDIELARLAAE 714

Query: 339 QFIKMRQEKT 348
              +++ E +
Sbjct: 715 HLFELKPENS 724


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  285 bits (728), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 184/612 (30%), Positives = 308/612 (50%), Gaps = 59/612 (9%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKN-VVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           + L++ Y K   I  A  LFD +  +N VVSW+ +I  YS NG   +++  FS M+ +G+
Sbjct: 97  NSLVALYAKCNDINGARKLFDRMYVRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGV 156

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
           + N++T    L A      ++L   IH  ++K G   D                      
Sbjct: 157 VTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAV 216

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F  L+   +V+ N+++ GFI N L+ +A+  F   + + L P+ V+++++I     LG 
Sbjct: 217 IFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGY 276

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
               + IH   IK G   ++ V N+++DMY+    +    + F  M  KD+ISWT     
Sbjct: 277 LLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAG 336

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +   +    AL++ R+++   +  D   + +++     L  L + K++H   + GGL S+
Sbjct: 337 YAQNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGGL-SD 395

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
             L N+II +Y +CG +D +  +F  I  K +VSWT++IS YV NG A +AL  F  M++
Sbjct: 396 PVLQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKE 455

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
              +  D +TLVSIL+A   L+ L+   ++HG     GF    S+ N L+  Y++CG+V+
Sbjct: 456 TGLEP-DYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISNTLVDMYARCGSVE 514

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            AY +F      R+++ W  +I  YG++G+GE A+ L+ +M +   +PD  T+L++L AC
Sbjct: 515 DAYKIFTCTKN-RNLILWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLALLYAC 573

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI 525
            H+GL N+G      M  E +++P  EHY C+VDLL R  CL +A  +   +     P +
Sbjct: 574 SHSGLVNEGKSFLEIMKCEYQLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSMQNEPTPEV 633

Query: 526 WRALLSGCVLHV---------------------------------GRFQDAEALRSGSQK 552
           W ALL  C +H                                  GR++D E +R   + 
Sbjct: 634 WCALLGACRIHSNKEIGEVAAEKLLELDLDNPGNYVLVSNVFAANGRWKDVEEVRMRMKG 693

Query: 553 KGIIKIPGISFL 564
            G+ K PG S++
Sbjct: 694 SGLTKNPGCSWI 705



 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 159/550 (28%), Positives = 273/550 (49%), Gaps = 38/550 (6%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTM 74
           Y K G + +AE +FD++ E+++ +W+ ++ GY  NG    +++ +  M   G+  +S+T 
Sbjct: 2   YGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTF 61

Query: 75  VGVLVAAAGLQNLELARSIHGLMVKFGLESDLF---------------EGLKNPY----- 114
             +L A   +++L     IHGL +K+G +S +F                G +  +     
Sbjct: 62  PVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYV 121

Query: 115 ---LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCEL 171
              +VS N+I++ +  N +  +A+ LF+    +G+V N  T    ++ C       L   
Sbjct: 122 RNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQ 181

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           IH   +K G +LDV V N+++ MY     +  A  IF  +E KD+++W  M+  F+    
Sbjct: 182 IHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGL 241

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
             +AL+ F +++ + +  D V+++++I  +  LG L  GK++HA  +  G  S + + N+
Sbjct: 242 YSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNT 301

Query: 292 IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
           +I MY+KC  +      F+ +  K L+SWT   +GY QN C  +AL    +++ E  D V
Sbjct: 302 LIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMD-V 360

Query: 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVF 411
           D+  + SIL A   L  L    ++HG     G      +QN +I  Y +CG +D A  +F
Sbjct: 361 DATMIGSILLACRGLNCLGKIKEIHGYTIRGGLSD-PVLQNTIIDVYGECGIIDYAVRIF 419

Query: 412 EEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA-CGHAGL 470
           E +   +DVVSW ++I  Y  NG    AL ++  M ETG  PD  T +SIL+A C  + L
Sbjct: 420 ESIE-CKDVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAVCSLSTL 478

Query: 471 TN----DGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIW 526
                  G +I    I E  +  +      +VD+ AR G + DA  +     +     +W
Sbjct: 479 KKGKEIHGFIIRKGFILEGSISNT------LVDMYARCGSVEDAYKIF-TCTKNRNLILW 531

Query: 527 RALLSGCVLH 536
            A++S   +H
Sbjct: 532 TAMISAYGMH 541



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 108/382 (28%), Positives = 208/382 (54%), Gaps = 24/382 (6%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D Y ++ L++ Y + GK+ EA  +F  +  K++V+W+ ++ G+  NG + ++++ F  +
Sbjct: 193 LDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDL 252

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------- 106
             + L P+  +++ ++VA+  L  L   + IH   +K G +S++                
Sbjct: 253 QNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCM 312

Query: 107 ------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                 F+ + +  L+S     AG+  NK + QA+ L    +  G+  +A  + +++  C
Sbjct: 313 SYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLAC 372

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             L      + IHG TI+ GL  D  + N+++D+Y     +D A++IF  +ECKDV+SWT
Sbjct: 373 RGLNCLGKIKEIHGYTIRGGLS-DPVLQNTIIDVYGECGIIDYAVRIFESIECKDVVSWT 431

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+  +V    A  AL++F  M+++ +  D V L++++S    L  LK+GK++H  ++  
Sbjct: 432 SMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRK 491

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           G   E  +SN+++ MY++CG ++ +  +F     ++L+ WTA+IS Y  +G    A+  F
Sbjct: 492 GFILEGSISNTLVDMYARCGSVEDAYKIFTCTKNRNLILWTAMISAYGMHGYGEAAVELF 551

Query: 341 IKMRQEKTDSVDSITLVSILTA 362
           ++M+ EK    D IT +++L A
Sbjct: 552 MRMKDEKIIP-DHITFLALLYA 572



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 128/238 (53%), Gaps = 3/238 (1%)

Query: 295 MYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSI 354
           MY KCG +  +  +F++++E+S+ +W A++ GYV NG A  AL  + +MR     S DS 
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGV-SFDSY 59

Query: 355 TLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM 414
           T   +L A G +  L    ++HG+A + G   +  V N L++ Y+KC +++ A  +F+ M
Sbjct: 60  TFPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRM 119

Query: 415 GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDG 474
               DVVSWN+II  Y  NG    AL L+ +M + G V ++ T+ + L AC  +     G
Sbjct: 120 YVRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLG 179

Query: 475 LVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSG 532
           + I   +++  +V         +V +  R G + +A+ + G  LEG     W ++L+G
Sbjct: 180 MQIHAAILKSGRVLDVYVA-NALVAMYVRFGKMPEAAVIFGN-LEGKDIVTWNSMLTG 235



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 21/81 (25%), Positives = 45/81 (55%), Gaps = 2/81 (2%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ L+  Y + G +++A  +F     +N++ W+ +I  Y ++G+ E +++ F  M    +
Sbjct: 500 SNTLVDMYARCGSVEDAYKIFTCTKNRNLILWTAMISAYGMHGYGEAAVELFMRMKDEKI 559

Query: 68  LPNSFTMVGVLVAA--AGLQN 86
           +P+  T + +L A   +GL N
Sbjct: 560 IPDHITFLALLYACSHSGLVN 580


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  284 bits (727), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 192/611 (31%), Positives = 299/611 (48%), Gaps = 58/611 (9%)

Query: 10  KLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLP 69
           KL   Y    ++  A  LFDEIP  +V+ W+ +I  Y+ NG  + ++  +  M+  G+ P
Sbjct: 48  KLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRP 107

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LF 107
           N +T   VL A +GL  +E    IH     FGLESD                      LF
Sbjct: 108 NKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLF 167

Query: 108 EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRA 167
             + +  +V+ NA++AG     L   AV L    +  G+ PN+ T++ V+       +  
Sbjct: 168 SSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALG 227

Query: 168 LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
             + +HG  ++      V V   +LDMY+    L  A +IF  M  ++ +SW+ M+G +V
Sbjct: 228 HGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYV 287

Query: 228 DFEYAGDALKIFREM-RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
             +   +AL++F +M  K  +    V L +++   A L DL RG++LH  ++  G   ++
Sbjct: 288 ASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDI 347

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            L N++++MY+KCG +D +   F+++  K  VS++AI+SG VQNG A  AL+ F  M+  
Sbjct: 348 LLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLS 407

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
             D  D  T++ +L A   LAAL+     HG     GF     + N LI  YSKCG +  
Sbjct: 408 GIDP-DLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISF 466

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           A  VF  M    D+VSWN +I GYG++G G  AL L+H +   G  PD  T++ +L++C 
Sbjct: 467 AREVFNRMD-RHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCS 525

Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIW 526
           H+GL  +G + F+ M  +  + P  EH  C+VD+L RAG + +A      +       IW
Sbjct: 526 HSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIW 585

Query: 527 RALLSGCVLH---------------------------------VGRFQDAEALRSGSQKK 553
            ALLS C +H                                  GR+ DA  +R   +  
Sbjct: 586 SALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDW 645

Query: 554 GIIKIPGISFL 564
           G+ KIPG S++
Sbjct: 646 GLKKIPGCSWI 656



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 137/499 (27%), Positives = 239/499 (47%), Gaps = 34/499 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L+  Y K G + EA+ LF  +  ++VV+W+ +I G S+ G  + +++    M 
Sbjct: 143 DVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQ 202

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES---------DLFE------ 108
             G+ PNS T+VGVL      + L   +++HG  V+   ++         D++       
Sbjct: 203 EEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLL 262

Query: 109 ---------GLKNPYLVSCNAIVAGFINNKLFQQAVLLFN-FFRGSGLVPNAVTMLTVIR 158
                    G++N   VS +A++ G++ +   ++A+ LF+       + P  VT+ +V+R
Sbjct: 263 YARKIFDVMGVRNE--VSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLR 320

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C  L   +    +H   IKLG +LD+ + N++L MY+    +D AI+ F EM  KD +S
Sbjct: 321 ACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVS 380

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           ++ ++   V    A  AL IFR M+ S I  D   +L ++   + L  L+ G   H  ++
Sbjct: 381 FSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLI 440

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
           + G  ++  + N++I MYSKCG +  +R VFN++    +VSW A+I GY  +G   EAL 
Sbjct: 441 VRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALG 500

Query: 339 QFIKMRQ--EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
            F  +     K D +  I L+S  + SG +    +        F    PR      C++ 
Sbjct: 501 LFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSI-VPRMEHCI-CMVD 558

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
              + G +D A+     M F  DV  W+ ++    ++ + E    +  K+   G  P+S+
Sbjct: 559 ILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLG--PEST 616

Query: 457 TYLSIL-NACGHAGLTNDG 474
               +L N    AG  +D 
Sbjct: 617 GNFVLLSNIYSAAGRWDDA 635


>gi|334185017|ref|NP_186807.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546765|sp|Q9SS97.2|PP205_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g01580
 gi|332640170|gb|AEE73691.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score =  284 bits (726), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 173/558 (31%), Positives = 291/558 (52%), Gaps = 36/558 (6%)

Query: 23  EAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAA 82
           +A  +F E+ ++++  W+ ++   S     E+ +  FSHM      P++FT+   L A  
Sbjct: 12  DARQMFGEMTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKACG 71

Query: 83  GLQNLELARSIHGLMVK-FGLESDL----------------------FEGLKNPYLVSCN 119
            L+ +     IHG + K   L SDL                      F+ L+ P +V+ +
Sbjct: 72  ELREVNYGEMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKPDIVTWS 131

Query: 120 AIVAGFINNKLFQQAVLLFNFFR----GSGLVPNAVTMLTVIRGCVALGSRALCELIHGL 175
           ++V+GF  N    QAV    FFR     S + P+ VT++T++  C  L +  L   +HG 
Sbjct: 132 SMVSGFEKNGSPYQAV---EFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCVHGF 188

Query: 176 TIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDA 235
            I+ G   D+S+ NS+L+ Y+       A+ +F+ +  KDVISW+ ++  +V    A +A
Sbjct: 189 VIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAAAEA 248

Query: 236 LKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAM 295
           L +F +M       +   +L ++   A   DL++G++ H   +  GL++E+++S +++ M
Sbjct: 249 LLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVSTALVDM 308

Query: 296 YSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSIT 355
           Y KC   + + +VF++I  K +VSW A+ISG+  NG A  ++ +F  M  E     D+I 
Sbjct: 309 YMKCFSPEEAYAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAIL 368

Query: 356 LVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMG 415
           +V +L +  EL  LE     H    + GF     +   L+  YS+CG++  A  VF  + 
Sbjct: 369 MVKVLGSCSELGFLEQAKCFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIA 428

Query: 416 FLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV-PDSSTYLSILNACGHAGLTNDG 474
            L+D V W ++I GYG++G G  AL  ++ M ++ EV P+  T+LSIL+AC HAGL ++G
Sbjct: 429 -LKDTVVWTSLITGYGIHGKGTKALETFNHMVKSSEVKPNEVTFLSILSACSHAGLIHEG 487

Query: 475 LVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCV 534
           L IF  M+ + ++ P+ EHY  +VDLL R G L  A  +  ++     P I   LL  C 
Sbjct: 488 LRIFKLMVNDYRLAPNLEHYAVLVDLLGRVGDLDTAIEITKRMPFSPTPQILGTLLGACR 547

Query: 535 LHVGRFQDAEALRSGSQK 552
           +H    Q+ E   + ++K
Sbjct: 548 IH----QNGEMAETVAKK 561



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 129/495 (26%), Positives = 235/495 (47%), Gaps = 34/495 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM- 62
           D Y  S L+  Y K G++ EA  +FDE+ + ++V+WS ++ G+  NG   ++++ F  M 
Sbjct: 95  DLYVGSSLIYMYIKCGRMIEALRMFDELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMV 154

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
           M S + P+  T++ ++ A   L N  L R +HG +++ G  +D                 
Sbjct: 155 MASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVIRRGFSNDLSLVNSLLNCYAKSRAF 214

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                LF+ +    ++S + ++A ++ N    +A+L+FN     G  PN  T+L V++ C
Sbjct: 215 KEAVNLFKMIAEKDVISWSTVIACYVQNGAAAEALLVFNDMMDDGTEPNVATVLCVLQAC 274

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
            A          H L I+ GL  +V V+ +++DMY      + A  +F  +  KDV+SW 
Sbjct: 275 AAAHDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPRKDVVSWV 334

Query: 221 RMMGLFVDFEYAGDALKIFREM-RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
            ++  F     A  +++ F  M  ++    D + ++ ++   + LG L++ K  H+ V+ 
Sbjct: 335 ALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMVKVLGSCSELGFLEQAKCFHSYVIK 394

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G  S   +  S++ +YS+CG L ++  VFN I  K  V WT++I+GY  +G   +AL  
Sbjct: 395 YGFDSNPFIGASLVELYSRCGSLGNASKVFNGIALKDTVVWTSLITGYGIHGKGTKALET 454

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN-----CL 394
           F  M +      + +T +SIL+A      +   L++    F+     YR   N      L
Sbjct: 455 FNHMVKSSEVKPNEVTFLSILSACSHAGLIHEGLRI----FKLMVNDYRLAPNLEHYAVL 510

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           +    + G++D A  + + M F        T++    ++ +GE A  +  K+ E  E   
Sbjct: 511 VDLLGRVGDLDTAIEITKRMPFSPTPQILGTLLGACRIHQNGEMAETVAKKLFEL-ESNH 569

Query: 455 SSTYLSILNACGHAG 469
           +  Y+ + N  G  G
Sbjct: 570 AGYYMLMSNVYGVKG 584


>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Vitis vinifera]
          Length = 853

 Score =  284 bits (726), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 184/626 (29%), Positives = 310/626 (49%), Gaps = 59/626 (9%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  S L+  Y ++G I +A  LFD +P K+ V W+++++GY  NG  + +   F  M
Sbjct: 180 LDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEM 239

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
             +   PNS T   VL   A    +     +HGL+V  GLE D                 
Sbjct: 240 RRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHL 299

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                LF+ +    LV+ N +++G++ N    +A  LF+    + + P+++T  + +   
Sbjct: 300 FDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISARMKPDSITFSSFLPLL 359

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
               +    + IH   I+ G+ LDV + ++++D+Y    D++ A +IF +    D++  T
Sbjct: 360 SEGATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMARKIFDQRTPVDIVVCT 419

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+  +V      +AL+IFR + + R+  ++V L +++   A L  L  GK+LH  ++  
Sbjct: 420 AMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKN 479

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           G      + ++I+ MY+KCG LD +   F  I++K  V W ++I+   QNG   EA++ F
Sbjct: 480 GHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLF 539

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            +M    T   D +++ + L+A   L AL    ++H       F      ++ LI  YSK
Sbjct: 540 RQMGMAGT-KYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSK 598

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CGN+DLA  VF+ M   ++ VSWN+II  YG +G  + +L L+H M   G  PD  T+L+
Sbjct: 599 CGNLDLACRVFDTME-EKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLA 657

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           I++ACGHAG  ++G+  F  M EE  +    EHY C+VDL  RAG L++A G+   +   
Sbjct: 658 IISACGHAGQVDEGIHYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFS 717

Query: 521 MGPNIWRALLSGCVLH---------------------------------VGRFQDAEALR 547
               +W  LL  C LH                                  G+++    +R
Sbjct: 718 PDAGVWGTLLGACRLHGNVELAEVASRNLFDLDPQNSGYYVLLSNVHANAGQWESVLKIR 777

Query: 548 SGSQKKGIIKIPGISFL--NSTSRDF 571
           S  +++G+ K+PG S++  N+T+  F
Sbjct: 778 SLMKERGVQKVPGCSWIDVNNTTHMF 803



 Score =  201 bits (511), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 153/569 (26%), Positives = 275/569 (48%), Gaps = 27/569 (4%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           +KLL  Y   G   +A+N+F ++       W+ +I G+++ G  + ++  +  M+  G L
Sbjct: 85  TKLLGMYVLCGAFLDAKNIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTL 144

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG------------------- 109
           P+ +T   V+ A  GL ++ L R +H  +   G E D+F G                   
Sbjct: 145 PDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYL 204

Query: 110 ---LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
              + +   V  N ++ G++ N  +  A  +F   R +   PN+VT   V+  C +    
Sbjct: 205 FDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMI 264

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
                +HGL +  GL +D  V N++L MY+    L  A ++F  M   D+++W  M+  +
Sbjct: 265 NFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGY 324

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
           V   +  +A  +F EM  +R+  D++   + + + +    L++GK++H  ++  G+  ++
Sbjct: 325 VQNGFMDEASCLFHEMISARMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDV 384

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            L +++I +Y KC D++ +R +F+Q T   +V  TA+ISGYV NG    AL  F  + QE
Sbjct: 385 FLKSALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQE 444

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
           +  + +S+TL S+L A   LAAL +  +LHG   + G      V + ++  Y+KCG +DL
Sbjct: 445 RMRA-NSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDL 503

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           A+  F  +   +D V WN++I     NG  E A+ L+ +M   G   D  +  + L+AC 
Sbjct: 504 AHQTFIGIS-DKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACA 562

Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIW 526
           +    + G  I   M+     +        ++D+ ++ G L D +      +E      W
Sbjct: 563 NLPALHYGKEIHAFMM-RGAFRSDLFAESALIDMYSKCGNL-DLACRVFDTMEEKNEVSW 620

Query: 527 RALLSGCVLHVGRFQDAEALRSGSQKKGI 555
            ++++    H GR +D+  L  G    GI
Sbjct: 621 NSIIAAYGNH-GRLKDSLNLFHGMLGDGI 648



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 96/356 (26%), Positives = 164/356 (46%), Gaps = 19/356 (5%)

Query: 114 YLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIH 173
           +L S    +  F  N +     L F+      L P  V++L     C      +     H
Sbjct: 13  FLPSTTFKLKSFHTNSVNIGKPLQFSIHNDDSLAPQLVSILQT---CTDPSGLSQGRQAH 69

Query: 174 GLTIKLGLILDVSVNNSVLDMYS-CLMDLDAAIQIFREME--CKDVISWT----RMMGLF 226
              +  G+  +  +   +L MY  C   LDA   IF ++   C +  +W      MMG F
Sbjct: 70  AQMLVNGIGYNGILGTKLLGMYVLCGAFLDAK-NIFYQLRLWCSEPWNWMIRGFTMMGQF 128

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
            DF     AL  + +M     + D      +I     L  +  G+ +H ++   G + ++
Sbjct: 129 -DF-----ALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELDV 182

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            + +S+I  YS+ G +  +R +F+++  K  V W  +++GYV+NG    A   F++MR+ 
Sbjct: 183 FVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRT 242

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
           +T+  +S+T   +L+       +    QLHG+   +G      V N L++ Y+KCG++  
Sbjct: 243 ETNP-NSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFD 301

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
           A  +F+ M    D+V+WN +I GY  NG  + A  L+H+M      PDS T+ S L
Sbjct: 302 ARRLFDMMP-KTDLVTWNGMISGYVQNGFMDEASCLFHEMISARMKPDSITFSSFL 356


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  284 bits (726), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 192/611 (31%), Positives = 298/611 (48%), Gaps = 58/611 (9%)

Query: 10  KLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLP 69
           KL   Y    ++  A  LFDEIP  +V+ W+ +I  Y+ NG  + ++  +  M+  G+ P
Sbjct: 48  KLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRP 107

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LF 107
           N +T   VL A +GL  +E    IH     FGLESD                      LF
Sbjct: 108 NKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLF 167

Query: 108 EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRA 167
             + +  +V+ NA++AG     L   AV L    +  G+ PN+ T++ V+       +  
Sbjct: 168 SSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALG 227

Query: 168 LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
             + +HG  ++      V V   +LDMY+    L  A +IF  M  ++ +SW+ M+G +V
Sbjct: 228 HGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYV 287

Query: 228 DFEYAGDALKIFREM-RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
             +   +AL++F +M  K  +    V L +++   A L DL RG++LH  ++  G   ++
Sbjct: 288 XSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDI 347

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            L N++++MY+KCG +D +   F+ +  K  VS++AI+SG VQNG A  AL+ F  M+  
Sbjct: 348 LLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLS 407

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
             D  D  T++ +L A   LAAL+     HG     GF     + N LI  YSKCG +  
Sbjct: 408 GIDP-DLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISF 466

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           A  VF  M    D+VSWN +I GYG++G G  AL L+H +   G  PD  T++ +L++C 
Sbjct: 467 AREVFNRMD-RHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCS 525

Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIW 526
           H+GL  +G + F+ M  +  + P  EH  C+VD+L RAG + +A      +       IW
Sbjct: 526 HSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIW 585

Query: 527 RALLSGCVLH---------------------------------VGRFQDAEALRSGSQKK 553
            ALLS C +H                                  GR+ DA  +R   +  
Sbjct: 586 SALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDW 645

Query: 554 GIIKIPGISFL 564
           G+ KIPG S++
Sbjct: 646 GLKKIPGCSWI 656



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 136/499 (27%), Positives = 238/499 (47%), Gaps = 34/499 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L+  Y K G + EA+ LF  +  ++VV+W+ +I G S+ G  + +++    M 
Sbjct: 143 DVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQ 202

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES---------DLFE------ 108
             G+ PNS T+VGVL      + L   +++HG  V+   ++         D++       
Sbjct: 203 EEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLL 262

Query: 109 ---------GLKNPYLVSCNAIVAGFINNKLFQQAVLLFN-FFRGSGLVPNAVTMLTVIR 158
                    G++N   VS +A++ G++ +   ++A+ LF+       + P  VT+ +V+R
Sbjct: 263 YARKIFDVMGVRNE--VSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLR 320

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C  L   +    +H   IKLG +LD+ + N++L MY+    +D AI+ F  M  KD +S
Sbjct: 321 ACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVS 380

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           ++ ++   V    A  AL IFR M+ S I  D   +L ++   + L  L+ G   H  ++
Sbjct: 381 FSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLI 440

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
           + G  ++  + N++I MYSKCG +  +R VFN++    +VSW A+I GY  +G   EAL 
Sbjct: 441 VRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALG 500

Query: 339 QFIKMRQ--EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
            F  +     K D +  I L+S  + SG +    +        F    PR      C++ 
Sbjct: 501 LFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSI-VPRMEHCI-CMVD 558

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
              + G +D A+     M F  DV  W+ ++    ++ + E    +  K+   G  P+S+
Sbjct: 559 ILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLG--PEST 616

Query: 457 TYLSIL-NACGHAGLTNDG 474
               +L N    AG  +D 
Sbjct: 617 GNFVLLSNIYSAAGRWDDA 635


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  284 bits (726), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 165/531 (31%), Positives = 289/531 (54%), Gaps = 23/531 (4%)

Query: 28  FDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNL 87
           FDE+  +  + W+I+++  + +G    S+  F  MM SG+  +S+T   V  + + L+++
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 88  ELARSIHGLMVKFGL----------------------ESDLFEGLKNPYLVSCNAIVAGF 125
                +HG ++K G                          +F+ +    ++S N+I+ G+
Sbjct: 61  HGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGY 120

Query: 126 INNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDV 185
           ++N L ++ + +F     SG+  +  T+++V  GC      +L   +H + +K     + 
Sbjct: 121 VSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRED 180

Query: 186 SVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKS 245
              N++LDMYS   DLD+A  +FREM  + V+S+T M+  +     AG+A+K+F EM + 
Sbjct: 181 RFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEE 240

Query: 246 RIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSS 305
            I  D   +  +++  A    L  GK++H  +    L  ++ +SN+++ MY+KCG +  +
Sbjct: 241 GISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEA 300

Query: 306 RSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGE 365
             VF+++  K ++SW  II GY +N  A EAL+ F  + +EK  S D  T+  +L A   
Sbjct: 301 ELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACAS 360

Query: 366 LAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNT 425
           L+A +   ++HG     G+   R V N L+  Y+KCG + LA+++F+++   +D+VSW  
Sbjct: 361 LSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIA-SKDLVSWTV 419

Query: 426 IIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEEN 485
           +I GYG++G G+ A+AL+++M + G   D  +++S+L AC H+GL ++G   FN M  E 
Sbjct: 420 MIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHEC 479

Query: 486 KVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
           K++P+ EHY C+VD+LAR G L  A      +       IW ALL GC +H
Sbjct: 480 KIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIH 530



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 128/480 (26%), Positives = 233/480 (48%), Gaps = 35/480 (7%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L++ Y K+ ++  A  +FDE+ E++V+SW+ +I+GY  NG  EK +  F  M++SG+  +
Sbjct: 85  LVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEID 144

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVK--FGLESD--------------------LFE 108
             T+V V    A  + + L R++H + VK  F  E                      +F 
Sbjct: 145 LATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFR 204

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            + +  +VS  +++AG+    L  +AV LF      G+ P+  T+  V+  C        
Sbjct: 205 EMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDE 264

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
            + +H    +  L  D+ V+N+++DMY+    +  A  +F EM  KD+ISW  ++G +  
Sbjct: 265 GKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSK 324

Query: 229 FEYAGDALKIFR-EMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
             YA +AL +F   + + R   D   +  ++   A L    +G+++H  ++  G  S+  
Sbjct: 325 NCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRH 384

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
           ++NS++ MY+KCG L  +  +F+ I  K LVSWT +I+GY  +G  +EA+  F +MRQ  
Sbjct: 385 VANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAG 444

Query: 348 TDSVDSITLVSILTASGELAALE-----ICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
            ++ D I+ VS+L A      ++       +  H    E     Y     C++   ++ G
Sbjct: 445 IEA-DEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHY----ACIVDMLARTG 499

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
           ++  AY   E M    D   W  ++ G  ++   + A  +  K+ E    P+++ Y  ++
Sbjct: 500 DLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELE--PENTGYYVLM 557



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 108/227 (47%), Gaps = 39/227 (17%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
            D + S+ L+  Y K G ++EAE +F E+  K+++SW+ +I GYS N +  +++  F+ +
Sbjct: 279 FDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLL 338

Query: 63  MLSGLL-PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------- 105
           +      P+  T+  VL A A L   +  R IHG +++ G  SD                
Sbjct: 339 LEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGA 398

Query: 106 ------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                 LF+ + +  LVS   ++AG+  +   ++A+ LFN  R +G+  + ++ ++++  
Sbjct: 399 LLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYA 458

Query: 160 C-----VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDL 201
           C     V  G R    + H   I+             ++ Y+C++D+
Sbjct: 459 CSHSGLVDEGWRFFNIMRHECKIE-----------PTVEHYACIVDM 494


>gi|302801247|ref|XP_002982380.1| hypothetical protein SELMODRAFT_447 [Selaginella moellendorffii]
 gi|300149972|gb|EFJ16625.1| hypothetical protein SELMODRAFT_447 [Selaginella moellendorffii]
          Length = 730

 Score =  283 bits (725), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 180/582 (30%), Positives = 304/582 (52%), Gaps = 45/582 (7%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + LL+ Y K G I++A  +FD++P K+VVSW+ +I  ++  G   ++++    M+ + + 
Sbjct: 139 TALLNMYAKCGAIEQARAVFDQMPHKDVVSWTAMITAFAQMGDCRQALETLEGMIQARVQ 198

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------------- 106
           PN  T V  + A +  + L+  R IH  ++  GL  D+                      
Sbjct: 199 PNPVTFVAAITACSSREFLDRGRKIHAAVIDLGLHGDITIQNALVSMYAKGSSAEEALSV 258

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           F+ +++   VS N+++A F  +     A+ LF+     G+ P+ V+ L V+  C + G  
Sbjct: 259 FQRMEDRNRVSWNSMIAAFAASAQSCSAMGLFHGMNLEGIKPDDVSFLGVLSACSSTGCL 318

Query: 167 ALCELIHGLTIKLGLI---LDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
             C+ IH   ++L  +    D+SV NS++  Y+   DL+AA +IF+ +  K+V+SWT M+
Sbjct: 319 RSCKRIHS-QLELAAVHSPPDLSVENSLVTAYAKCGDLEAAERIFQRIPGKNVVSWTAML 377

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
             +        AL+++ +M    I  D+V LLN+I   +++GD+   ++LHA+V      
Sbjct: 378 TAYTFHGNGSKALELYDKMVGQSIQPDSVVLLNVIYAGSLVGDVGLARKLHARVASSSFM 437

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
            ++++ N++I MY++CG L+ +R VF+ I  K+LVSW A++  YVQ+G   EA+  F +M
Sbjct: 438 LKIQIQNALINMYARCGSLEEARRVFDGIERKNLVSWNAMMGSYVQHGYDEEAIALFSEM 497

Query: 344 RQEKT--------DSVDSITLVSILTASGELAALE----ICLQLHGIAFE--AGFPRYRS 389
           +   +         S D I  V +L A   L  L     I  +L  +  E  AG     +
Sbjct: 498 KTGNSKAMESGLRSSPDCIMAVILLCAHAGLGKLAEGRCIHAELCAVNPEILAGSTTNVT 557

Query: 390 VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
           + N L+S Y++CG++  A   F  M   RD V+W++++ GY  +GH E A+ LY  M   
Sbjct: 558 LGNALVSMYARCGSMGDASAAFHHM-RARDTVTWSSLVAGYAHHGHAEYAILLYRDMHLE 616

Query: 450 GEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSD 509
           G  PDS TY+SILN+C HAGL       F  M+E++ +    +H+ C+VD+L RAG +  
Sbjct: 617 GVQPDSVTYVSILNSCSHAGLLAQARHFFVSMVEDHCLAAWPDHWKCMVDVLGRAGFVGR 676

Query: 510 ASGLAGKLLEGMGPNI--WRALLSGCVLHVGRFQDAEALRSG 549
           A  +   +     P++  W  LL  C +H    + A A R+ 
Sbjct: 677 AEDVVRNM--PFQPDVVAWNTLLGCCKVHGDAQRGAVAARNA 716



 Score =  212 bits (539), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 163/601 (27%), Positives = 291/601 (48%), Gaps = 50/601 (8%)

Query: 11  LLSNYFKSG---KIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           L+  Y K G    + +A  +FD++P+K+VVSWS +I  Y   G   +++  F  M +   
Sbjct: 40  LIQMYRKCGGTSSLADARAVFDQMPKKDVVSWSCIIAAYGQAGHCREAINLFQRMDVE-- 97

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPY----------- 114
            PN   +V  L A +G ++L L  +IH  ++   L   +F G  L N Y           
Sbjct: 98  -PNEMVIVSTLAACSGAKDLALGMAIHARILSPDLRKSVFVGTALLNMYAKCGAIEQARA 156

Query: 115 ---------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
                    +VS  A++  F      +QA+        + + PN VT +  I  C +   
Sbjct: 157 VFDQMPHKDVVSWTAMITAFAQMGDCRQALETLEGMIQARVQPNPVTFVAAITACSSREF 216

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
                 IH   I LGL  D+++ N+++ MY+     + A+ +F+ ME ++ +SW  M+  
Sbjct: 217 LDRGRKIHAAVIDLGLHGDITIQNALVSMYAKGSSAEEALSVFQRMEDRNRVSWNSMIAA 276

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS- 284
           F     +  A+ +F  M    I  D V+ L ++S  +  G L+  K++H+Q+ L  + S 
Sbjct: 277 FAASAQSCSAMGLFHGMNLEGIKPDDVSFLGVLSACSSTGCLRSCKRIHSQLELAAVHSP 336

Query: 285 -ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
            +L + NS++  Y+KCGDL+++  +F +I  K++VSWTA+++ Y  +G   +AL  + KM
Sbjct: 337 PDLSVENSLVTAYAKCGDLEAAERIFQRIPGKNVVSWTAMLTAYTFHGNGSKALELYDKM 396

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
             +     DS+ L++++ A   +  + +  +LH     + F     +QN LI+ Y++CG+
Sbjct: 397 VGQSIQP-DSVVLLNVIYAGSLVGDVGLARKLHARVASSSFMLKIQIQNALINMYARCGS 455

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMT-------ETGEVPDSS 456
           ++ A  VF+ +   +++VSWN ++  Y  +G+ E A+AL+ +M        E+G      
Sbjct: 456 LEEARRVFDGIE-RKNLVSWNAMMGSYVQHGYDEEAIALFSEMKTGNSKAMESGLRSSPD 514

Query: 457 TYLSILNACGHAGLTN--DGLVIFNQMIEENK--VKPSQEHY---GCVVDLLARAGCLSD 509
             ++++  C HAGL    +G  I  ++   N   +  S  +      +V + AR G + D
Sbjct: 515 CIMAVILLCAHAGLGKLAEGRCIHAELCAVNPEILAGSTTNVTLGNALVSMYARCGSMGD 574

Query: 510 ASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIK--IPGISFLNST 567
           AS  A   +       W +L++G   H G  + A  L      +G+    +  +S LNS 
Sbjct: 575 ASA-AFHHMRARDTVTWSSLVAG-YAHHGHAEYAILLYRDMHLEGVQPDSVTYVSILNSC 632

Query: 568 S 568
           S
Sbjct: 633 S 633



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 109/221 (49%), Gaps = 9/221 (4%)

Query: 267 LKRGKQLHAQVV-LGGLQSELRLSNSIIAMYSKCG---DLDSSRSVFNQITEKSLVSWTA 322
           L  G+++H  ++  G     + L N +I MY KCG    L  +R+VF+Q+ +K +VSW+ 
Sbjct: 14  LADGRRVHDHILATGHFLRSVHLGNLLIQMYRKCGGTSSLADARAVFDQMPKKDVVSWSC 73

Query: 323 IISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEA 382
           II+ Y Q G  REA+N F +M  E  + V    +VS L A      L + + +H      
Sbjct: 74  IIAAYGQAGHCREAINLFQRMDVEPNEMV----IVSTLAACSGAKDLALGMAIHARILSP 129

Query: 383 GFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALAL 442
              +   V   L++ Y+KCG ++ A  VF++M   +DVVSW  +I  +   G    AL  
Sbjct: 130 DLRKSVFVGTALLNMYAKCGAIEQARAVFDQMPH-KDVVSWTAMITAFAQMGDCRQALET 188

Query: 443 YHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIE 483
              M +    P+  T+++ + AC      + G  I   +I+
Sbjct: 189 LEGMIQARVQPNPVTFVAAITACSSREFLDRGRKIHAAVID 229


>gi|225457769|ref|XP_002278218.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial [Vitis vinifera]
 gi|302142763|emb|CBI19966.3| unnamed protein product [Vitis vinifera]
          Length = 1048

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 184/621 (29%), Positives = 302/621 (48%), Gaps = 69/621 (11%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y  S L++ Y K  K++ A+ +FD + E+N+V W+ ++ GY+ NG+  K MK FS M   
Sbjct: 385 YVGSSLINMYAKCEKMEAAKKVFDALDERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGC 444

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF------------------ 107
           G  P+ FT   +L A A L+ LE+ R +H  ++K   E +LF                  
Sbjct: 445 GFWPDEFTYTSILSACACLECLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCGALEEA 504

Query: 108 ----EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRG---SGLVPNAVTMLTVIRGC 160
               E ++N   VS NAI+ G++  +   +A   FN FR     G+ P+ V++ +++ GC
Sbjct: 505 RQQFEFIRNRDNVSWNAIIVGYVQEEDEDEA---FNMFRRMILDGIAPDEVSLASILSGC 561

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             L +    E +H   +K GL   +   +S++DMY     ++AA  +F  M  + V+S  
Sbjct: 562 ANLQALEQGEQVHCFLVKSGLQTCLYAGSSLIDMYVKCGAIEAARYVFSCMPSRSVVSMN 621

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++  +   +   +A+ +F+EM+   +    +   +L+        L  G+Q+H  +   
Sbjct: 622 AIIAGYAQNDLV-EAIDLFQEMQNEGLNPSEITFASLLDACTGPYKLNLGRQIHCLIQKR 680

Query: 281 GLQSELR-LSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISGYVQNGCAREALN 338
           GL  +   L  S++ MY        +  +F++    KS + WTAIISG+ QNGC+ EAL 
Sbjct: 681 GLLYDGDFLGVSLLVMYMNSQRKTDADILFSEFQYPKSTILWTAIISGHTQNGCSEEALQ 740

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
            + +M +      D  T  S+L A   LA+L     +H + F  G        + ++  Y
Sbjct: 741 LYQEMHRNNARP-DQATFASVLRACSILASLGDGRMIHSLIFHVGLDSDELTGSAVVDMY 799

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
           +KCG++  +  VFEEMG   DV+SWN++I G+  NG+ E AL ++ +M  T   PD  T+
Sbjct: 800 AKCGDMKSSVQVFEEMGSKNDVISWNSMIVGFAKNGYAENALKIFDEMKHTRIRPDDVTF 859

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
           L +L AC HAG  ++G  IF+ M+   K+ P  +H  C++DLL R G L +A     KL 
Sbjct: 860 LGVLTACSHAGRVSEGREIFDIMVHSYKIVPRLDHCACMIDLLGRWGFLKEAEEFIDKL- 918

Query: 519 EGMGPN--IWRALLSGCVLH---------------------------------VGRFQDA 543
               PN  IW  LL  C +H                                  G + + 
Sbjct: 919 -NFEPNAMIWATLLGACRIHGDDIRGRRAAEKLIELEPENSSPYVLLSNIYAASGNWDEV 977

Query: 544 EALRSGSQKKGIIKIPGISFL 564
            ++R   ++KG+ K+PG S++
Sbjct: 978 NSVRRAMREKGLRKLPGCSWI 998



 Score =  219 bits (557), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 143/455 (31%), Positives = 231/455 (50%), Gaps = 16/455 (3%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+  Y K G + +A  +FD + + + VSW+ +I GY   G  E+++K F  M   GL+P+
Sbjct: 223 LIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLVPD 282

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKL 130
               V V+ A  GL  L+ A              DLF  + N  +V+ N +++G +    
Sbjct: 283 QVAFVTVITACVGLGRLDDA-------------CDLFVQMPNTNVVAWNVMISGHVKRGC 329

Query: 131 FQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNS 190
             +A+  F     +G+     T+ +V+    +L +     L+H   IK GL  +V V +S
Sbjct: 330 DIEAIDFFKNMWKTGVKSTRSTLGSVLSAIASLEALNYGLLVHAQAIKQGLNSNVYVGSS 389

Query: 191 VLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICD 250
           +++MY+    ++AA ++F  ++ ++++ W  M+G +    YA   +K+F EMR      D
Sbjct: 390 LINMYAKCEKMEAAKKVFDALDERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGCGFWPD 449

Query: 251 TVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFN 310
                +++S  A L  L+ G+QLH+ ++    +  L + N+++ MY+KCG L+ +R  F 
Sbjct: 450 EFTYTSILSACACLECLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCGALEEARQQFE 509

Query: 311 QITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALE 370
            I  +  VSW AII GYVQ     EA N F +M  +   + D ++L SIL+    L ALE
Sbjct: 510 FIRNRDNVSWNAIIVGYVQEEDEDEAFNMFRRMILDGI-APDEVSLASILSGCANLQALE 568

Query: 371 ICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGY 430
              Q+H    ++G        + LI  Y KCG ++ A  VF  M   R VVS N II GY
Sbjct: 569 QGEQVHCFLVKSGLQTCLYAGSSLIDMYVKCGAIEAARYVFSCMP-SRSVVSMNAIIAGY 627

Query: 431 GVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
             N   E A+ L+ +M   G  P   T+ S+L+AC
Sbjct: 628 AQNDLVE-AIDLFQEMQNEGLNPSEITFASLLDAC 661



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 139/483 (28%), Positives = 232/483 (48%), Gaps = 63/483 (13%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           S ++  Y K G ++ A   F+++ ++++++W+ V+  YS  G  E+ +  F  +   G+ 
Sbjct: 120 SAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSRQGSLEQVIWCFGSLQNCGVS 179

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE----------------------SDL 106
           PN FT   VL + A L +++L + +H  ++K G E                        +
Sbjct: 180 PNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSFCEGSLIDMYSKCGSLVDARKI 239

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           F+ + +P  VS  A++AG++   L ++A+ +F   +  GLVP+ V  +TVI  CV LG  
Sbjct: 240 FDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLVPDQVAFVTVITACVGLGR- 298

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
                                             LD A  +F +M   +V++W  M+   
Sbjct: 299 ----------------------------------LDDACDLFVQMPNTNVVAWNVMISGH 324

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
           V      +A+  F+ M K+ +      L +++S  A L  L  G  +HAQ +  GL S +
Sbjct: 325 VKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAIASLEALNYGLLVHAQAIKQGLNSNV 384

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            + +S+I MY+KC  +++++ VF+ + E++LV W A++ GY QNG A + +  F +MR  
Sbjct: 385 YVGSSLINMYAKCEKMEAAKKVFDALDERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGC 444

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
                D  T  SIL+A   L  LE+  QLH    +  F     V+N L+  Y+KCG ++ 
Sbjct: 445 GF-WPDEFTYTSILSACACLECLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCGALEE 503

Query: 407 AYIVFEEMGFL--RDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           A   FE   F+  RD VSWN II GY      + A  ++ +M   G  PD  +  SIL+ 
Sbjct: 504 ARQQFE---FIRNRDNVSWNAIIVGYVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSG 560

Query: 465 CGH 467
           C +
Sbjct: 561 CAN 563



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 146/313 (46%), Gaps = 37/313 (11%)

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           IH  T+K G      + ++++D+Y+   +++ A + F ++E +D+++W  ++ ++     
Sbjct: 103 IHAQTLKFGFGSKGRLGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSRQGS 162

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
               +  F  ++   +  +      ++S  A L D+  GKQ+H  V+  G +       S
Sbjct: 163 LEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSFCEGS 222

Query: 292 IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
           +I MYSKCG L  +R +F+ + +   VSWTA+I+GYVQ G   EAL  F  M Q+     
Sbjct: 223 LIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDM-QKLGLVP 281

Query: 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVF 411
           D +  V+++TA         C+ L                          G +D A  +F
Sbjct: 282 DQVAFVTVITA---------CVGL--------------------------GRLDDACDLF 306

Query: 412 EEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLT 471
            +M    +VV+WN +I G+   G    A+  +  M +TG     ST  S+L+A       
Sbjct: 307 VQMPNT-NVVAWNVMISGHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAIASLEAL 365

Query: 472 NDGLVIFNQMIEE 484
           N GL++  Q I++
Sbjct: 366 NYGLLVHAQAIKQ 378



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 116/220 (52%), Gaps = 2/220 (0%)

Query: 268 KRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGY 327
           +  K +HAQ +  G  S+ RL ++I+ +Y+KCG+++ +   FNQ+ ++ +++W +++S Y
Sbjct: 98  RTSKTIHAQTLKFGFGSKGRLGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMY 157

Query: 328 VQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRY 387
            + G   + +  F  + Q    S +  T   +L++   L  +++  Q+H    + GF   
Sbjct: 158 SRQGSLEQVIWCFGSL-QNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFN 216

Query: 388 RSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMT 447
              +  LI  YSKCG++  A  +F+ +    D VSW  +I GY   G  E AL ++  M 
Sbjct: 217 SFCEGSLIDMYSKCGSLVDARKIFDAV-VDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQ 275

Query: 448 ETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKV 487
           + G VPD   +++++ AC   G  +D   +F QM   N V
Sbjct: 276 KLGLVPDQVAFVTVITACVGLGRLDDACDLFVQMPNTNVV 315



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 1/96 (1%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKN-VVSWSIVIHGYSINGFHEKSMKAFSHM 62
           D    S ++  Y K G +K +  +F+E+  KN V+SW+ +I G++ NG+ E ++K F  M
Sbjct: 788 DELTGSAVVDMYAKCGDMKSSVQVFEEMGSKNDVISWNSMIVGFAKNGYAENALKIFDEM 847

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMV 98
             + + P+  T +GVL A +    +   R I  +MV
Sbjct: 848 KHTRIRPDDVTFLGVLTACSHAGRVSEGREIFDIMV 883


>gi|297836116|ref|XP_002885940.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331780|gb|EFH62199.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 944

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 176/622 (28%), Positives = 294/622 (47%), Gaps = 60/622 (9%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  +  +++ ++S Y K G +  A +LFD +P++ VV+W+I++  Y+ N   +++ K F 
Sbjct: 71  PHKNTVSTNTMISGYVKMGDLSSARHLFDAMPDRTVVTWTILMGWYAGNNHFDEAFKLFR 130

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYL----- 115
            M  S  LP+  T   +L              +H   VK G +++LF  + N  L     
Sbjct: 131 QMCRSCTLPDYVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNLFLTVCNVLLKSYCE 190

Query: 116 -------------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTV 156
                              V+ N ++ G+  + L+ +A+ LF   R SG  P+  T   V
Sbjct: 191 VRRLDLACVLFEEILDKDSVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHKPSDFTFSGV 250

Query: 157 IRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
           ++  V L   AL + +HGL++  G   D SV N +L  YS    +     +F EM   D 
Sbjct: 251 LKAVVGLHDFALGQQLHGLSVTTGFSRDASVGNQILHFYSKHDRVLETRNLFNEMPELDF 310

Query: 217 ISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQ 276
           +S+  ++  +   E   ++L +FREM+             ++S+ A L  L+ G+Q+H Q
Sbjct: 311 VSYNVVISSYSQAEQYEESLNLFREMQCMGFDRRNFPFATMLSIAANLSSLQVGRQVHCQ 370

Query: 277 VVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
            ++    S L + NS++ MY+KC   D +  +F  ++++S VSWTA+ISGYVQ G     
Sbjct: 371 AIVATADSILHVGNSLVDMYAKCEMFDEAELIFKSLSQRSTVSWTALISGYVQKGLHGAG 430

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
           L  F KMR     + D  T  ++L AS   A+L +  QLH     +G        + L+ 
Sbjct: 431 LKLFTKMRGANLRA-DQSTFATVLKASAGFASLLLGKQLHAFIIRSGNLENVFSGSGLVD 489

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
            Y+KCG++  A  VFEEM   R+ VSWN +I  Y  NG GE A+  + KM ++G  PDS 
Sbjct: 490 MYAKCGSIKDAVQVFEEMP-DRNAVSWNALISAYADNGDGEAAIGAFTKMIQSGLQPDSV 548

Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK 516
           + L +L AC H G    G   F  M     + P ++HY C++DLL R G  ++A  L  +
Sbjct: 549 SILGVLIACSHCGFVEQGTEFFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDE 608

Query: 517 LLEGMGPNIWRALLSGCVLH----------------------------------VGRFQD 542
           +       +W ++L+ C ++                                   G++++
Sbjct: 609 MPFEPDEIMWSSVLNACRIYKNQSLAERAAEQLFSMEKLRDAAAYVSMSNIYAAAGKWEN 668

Query: 543 AEALRSGSQKKGIIKIPGISFL 564
              ++   +++GI K+P  S++
Sbjct: 669 VRHVKKAMRERGIKKVPAYSWV 690


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 1005

 Score =  283 bits (723), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 168/555 (30%), Positives = 283/555 (50%), Gaps = 24/555 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  S L+  Y K G++  AE +F  +P++N VSW+ +++G++  G  EK +  F  M 
Sbjct: 263 DLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMT 322

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
            S +  + FT+  VL   A   NL   + +H L ++ G E D                  
Sbjct: 323 GSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAG 382

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +F  +++P +VS +AI+         ++A  +F   R SG++PN  T+ +++    
Sbjct: 383 DALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAAT 442

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            LG     E IH    K G   D +V N+++ MY  +  +    ++F     +D+ISW  
Sbjct: 443 DLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNA 502

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++  F D E     L+IF +M       +    ++++   + L D+  GKQ+HAQ+V   
Sbjct: 503 LLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNS 562

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           L     +  +++ MY+K   L+ + ++FN++ ++ L +WT I++GY Q+G   +A+  FI
Sbjct: 563 LDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFI 622

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +M++E     +  TL S L+    +A L+   QLH +A +AG      V + L+  Y+KC
Sbjct: 623 QMQREGVKP-NEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKC 681

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G V+ A +VF+ +   RD VSWNTII GY  +G G  AL  +  M + G VPD  T++ +
Sbjct: 682 GCVEDAEVVFDGL-VSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGV 740

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L+AC H GL  +G   FN + +   + P+ EHY C+VD+L RAG   +      ++    
Sbjct: 741 LSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTS 800

Query: 522 GPNIWRALLSGCVLH 536
              IW  +L  C +H
Sbjct: 801 NVLIWETVLGACKMH 815



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 147/531 (27%), Positives = 253/531 (47%), Gaps = 29/531 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L++ Y K G    A  +F EIPE++VVSW+ +I G+   G+   ++  F  M 
Sbjct: 162 DSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYGSGAVNLFCEMR 221

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG-------------- 109
             G+  N FT    L A +   +LE  + +H   +K G  SDLF G              
Sbjct: 222 REGVEANEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMV 281

Query: 110 --------LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                   +     VS NA++ GF      ++ + LF    GS +  +  T+ TV++GC 
Sbjct: 282 LAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCA 341

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
             G+    +++H L I++G  LD  ++  ++DMYS       A+++F  +E  DV+SW+ 
Sbjct: 342 NSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSA 401

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++        + +A ++F+ MR S +I +   L +L+S    LGDL  G+ +HA V   G
Sbjct: 402 IITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYG 461

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
            + +  + N+++ MY K G +     VF   T + L+SW A++SG+  N      L  F 
Sbjct: 462 FEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFN 521

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +M  E  +  +  T +SIL +   L+ +++  Q+H    +        V   L+  Y+K 
Sbjct: 522 QMLAEGFNP-NMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKN 580

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
             ++ A  +F  +   RD+ +W  I+ GY  +G GE A+  + +M   G  P+  T  S 
Sbjct: 581 RFLEDAETIFNRL-IKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASS 639

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY--GCVVDLLARAGCLSDA 510
           L+ C      + G  + +  I   K   S + +    +VD+ A+ GC+ DA
Sbjct: 640 LSGCSRIATLDSGRQLHSMAI---KAGQSGDMFVASALVDMYAKCGCVEDA 687



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 127/494 (25%), Positives = 231/494 (46%), Gaps = 25/494 (5%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D + S  L+  Y K G   +A  +F  I + +VVSWS +I      G   ++ + F  M
Sbjct: 363 LDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRM 422

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
             SG++PN FT+  ++ AA  L +L    SIH  + K+G E D                 
Sbjct: 423 RHSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSV 482

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +FE   N  L+S NA+++GF +N+     + +FN     G  PN  T ++++R C
Sbjct: 483 QDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSC 542

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
            +L    L + +H   +K  L  +  V  +++DMY+    L+ A  IF  +  +D+ +WT
Sbjct: 543 SSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWT 602

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++  +        A+K F +M++  +  +   L + +S  + +  L  G+QLH+  +  
Sbjct: 603 VIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKA 662

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           G   ++ ++++++ MY+KCG ++ +  VF+ +  +  VSW  II GY Q+G   +AL  F
Sbjct: 663 GQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAF 722

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQ-LHGIAFEAGFPRYRSVQNCLISSYS 399
             M  E T   D +T + +L+A   +  +E   +  + ++   G         C++    
Sbjct: 723 EAMLDEGT-VPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILG 781

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           + G         EEM    +V+ W T++    ++G+ E       K+ E  E    S Y+
Sbjct: 782 RAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFEL-EPEIDSNYI 840

Query: 460 SILNACGHAGLTND 473
            + N     G+ +D
Sbjct: 841 LLSNMFAAKGMWDD 854



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 132/495 (26%), Positives = 233/495 (47%), Gaps = 32/495 (6%)

Query: 76  GVLVAAAGLQNLELARSIHGLMVKFGLESD--LFEGLKNPY------------------- 114
           G+L   A   +L   ++IHG ++K G+  D  L+  L N Y                   
Sbjct: 133 GMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPER 192

Query: 115 -LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIH 173
            +VS  A++ GF+       AV LF   R  G+  N  T  T ++ C         + +H
Sbjct: 193 DVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVH 252

Query: 174 GLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAG 233
              IK+G   D+ V ++++D+Y+   ++  A ++F  M  ++ +SW  ++  F     A 
Sbjct: 253 AEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAE 312

Query: 234 DALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSII 293
             L +F  M  S I      L  ++   A  G+L+ G+ +H+  +  G + +  +S  ++
Sbjct: 313 KVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLV 372

Query: 294 AMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDS 353
            MYSKCG    +  VF +I +  +VSW+AII+   Q G +REA   F +MR       + 
Sbjct: 373 DMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIP-NQ 431

Query: 354 ITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEE 413
            TL S+++A+ +L  L     +H    + GF    +V N L++ Y K G+V     VFE 
Sbjct: 432 FTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEA 491

Query: 414 MGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTND 473
               RD++SWN ++ G+  N   +T L ++++M   G  P+  T++SIL +C      + 
Sbjct: 492 TTN-RDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDL 550

Query: 474 GLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGC 533
           G  +  Q++ +N +  +      +VD+ A+   L DA  +  +L++       R L +  
Sbjct: 551 GKQVHAQIV-KNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIK-------RDLFAWT 602

Query: 534 VLHVGRFQDAEALRS 548
           V+  G  QD +  ++
Sbjct: 603 VIVAGYAQDGQGEKA 617


>gi|357154827|ref|XP_003576915.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like, partial [Brachypodium distachyon]
          Length = 735

 Score =  282 bits (722), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 176/621 (28%), Positives = 315/621 (50%), Gaps = 59/621 (9%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L++ Y   G   +A  +FDE+P ++VVSW+ ++  +  N   + + +A   MM
Sbjct: 110 DVFAGNTLVAFYAACGHAGDARRVFDEMPARDVVSWNSLVSSFLANKMFDDARQALLSMM 169

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES------------------- 104
            SG+  N  ++V V+ A    Q       +HGL++K GL+S                   
Sbjct: 170 RSGVPVNVASLVSVVPACGVEQEGGFGLGVHGLVLKTGLDSIVNLGNALVDMYGKFGHVE 229

Query: 105 ---DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +FEG+     VS N+ +  F+N  L+   + LF      G +P ++T+ +++   V
Sbjct: 230 ASMKVFEGMPERNEVSWNSAIGCFLNAGLYGDVLALFRGMSERGFMPGSITLSSLLPALV 289

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            LG   L   +HG +IK  + LD+ V NS++DMY+    L+ A  +F ++E ++V+SW  
Sbjct: 290 ELGYFDLGREVHGYSIKRAMELDIFVANSLVDMYAKFGSLEKACAVFEKIEVRNVVSWNA 349

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+   V      +A  +  +M+K     +++ L+NL+   + +  LK GKQ+HA  +  G
Sbjct: 350 MIANLVQNGAESEAFGLVIKMQKDGECPNSITLVNLLPACSRMASLKTGKQIHAWSIRTG 409

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           L  +L +SN++I MY+KCG L  ++S+F+ ++EK  VS+  +I GY Q+  + E+LN F 
Sbjct: 410 LMFDLFISNALIDMYAKCGQLRLAQSIFD-LSEKDDVSYNTLILGYSQSPWSFESLNLFK 468

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           ++     +  D+I+ +  LTA   L++ +   ++HG+        +  + N L+  Y+K 
Sbjct: 469 QLSSVGIE-YDAISFMGALTACTNLSSFKQGKEIHGVLVRRLLSNHPFLANTLLGLYTKG 527

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G +D A  +F  +   +DV SWN +I GYG++G  + A  L+  M + G   D  +Y+++
Sbjct: 528 GMLDTASKIFNRIK-EKDVASWNNMIMGYGMHGQIDAAFHLFDLMKDHGVTYDHVSYIAV 586

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L+ C H GL   G   F+ M+ +N ++P Q HY C+VDLL R+G L+++  +   +    
Sbjct: 587 LSVCSHGGLVERGKKYFSHMLAQN-LEPQQMHYACMVDLLGRSGQLTESVEIILDMPFHA 645

Query: 522 GPNIWRALLSGCVLH---------------------------------VGRFQDAEALRS 548
             ++W ALL  C +H                                  GR+ +A  +R+
Sbjct: 646 NSDVWGALLGACRIHGNIELAQYAADHLFELKPEHSGYYSVLRNMYAEAGRWNEAHKIRT 705

Query: 549 GSQKKGIIKIPGISFLNSTSR 569
             + + + K P  S++ S ++
Sbjct: 706 LMKSRKVQKNPAYSWVQSGNK 726



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 123/436 (28%), Positives = 227/436 (52%), Gaps = 27/436 (6%)

Query: 54  KSMKAFSHMMLSGLLPNSFTMV----------------GVLVAAAGLQNLELARSIHG-L 96
           +++  ++HM+ SG+ P+  T                  G+ + AA L++  LA    G  
Sbjct: 57  EALLVYNHMLRSGVSPDDRTFPFALHAAAAAAQAHPAKGLELHAAALRSGHLADVFAGNT 116

Query: 97  MVKF-------GLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPN 149
           +V F       G    +F+ +    +VS N++V+ F+ NK+F  A         SG+  N
Sbjct: 117 LVAFYAACGHAGDARRVFDEMPARDVVSWNSLVSSFLANKMFDDARQALLSMMRSGVPVN 176

Query: 150 AVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFR 209
             ++++V+  C           +HGL +K GL   V++ N+++DMY     ++A++++F 
Sbjct: 177 VASLVSVVPACGVEQEGGFGLGVHGLVLKTGLDSIVNLGNALVDMYGKFGHVEASMKVFE 236

Query: 210 EMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKR 269
            M  ++ +SW   +G F++    GD L +FR M +   +  ++ L +L+     LG    
Sbjct: 237 GMPERNEVSWNSAIGCFLNAGLYGDVLALFRGMSERGFMPGSITLSSLLPALVELGYFDL 296

Query: 270 GKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQ 329
           G+++H   +   ++ ++ ++NS++ MY+K G L+ + +VF +I  +++VSW A+I+  VQ
Sbjct: 297 GREVHGYSIKRAMELDIFVANSLVDMYAKFGSLEKACAVFEKIEVRNVVSWNAMIANLVQ 356

Query: 330 NGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS 389
           NG   EA    IKM Q+  +  +SITLV++L A   +A+L+   Q+H  +   G      
Sbjct: 357 NGAESEAFGLVIKM-QKDGECPNSITLVNLLPACSRMASLKTGKQIHAWSIRTGLMFDLF 415

Query: 390 VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
           + N LI  Y+KCG + LA  +F+     +D VS+NT+I GY  +     +L L+ +++  
Sbjct: 416 ISNALIDMYAKCGQLRLAQSIFDLSE--KDDVSYNTLILGYSQSPWSFESLNLFKQLSSV 473

Query: 450 GEVPDSSTYLSILNAC 465
           G   D+ +++  L AC
Sbjct: 474 GIEYDAISFMGALTAC 489



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 152/324 (46%), Gaps = 21/324 (6%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D + ++ L+  Y K G +++A  +F++I  +NVVSW+ +I     NG   ++      M
Sbjct: 311 LDIFVANSLVDMYAKFGSLEKACAVFEKIEVRNVVSWNAMIANLVQNGAESEAFGLVIKM 370

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPYL----- 115
              G  PNS T+V +L A + + +L+  + IH   ++ GL  DLF    L + Y      
Sbjct: 371 QKDGECPNSITLVNLLPACSRMASLKTGKQIHAWSIRTGLMFDLFISNALIDMYAKCGQL 430

Query: 116 --------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                         VS N ++ G+  +    +++ LF      G+  +A++ +  +  C 
Sbjct: 431 RLAQSIFDLSEKDDVSYNTLILGYSQSPWSFESLNLFKQLSSVGIEYDAISFMGALTACT 490

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            L S    + IHG+ ++  L     + N++L +Y+    LD A +IF  ++ KDV SW  
Sbjct: 491 NLSSFKQGKEIHGVLVRRLLSNHPFLANTLLGLYTKGGMLDTASKIFNRIKEKDVASWNN 550

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+  +        A  +F  M+   +  D V+ + ++SV +  G ++RGK+  + ++   
Sbjct: 551 MIMGYGMHGQIDAAFHLFDLMKDHGVTYDHVSYIAVLSVCSHGGLVERGKKYFSHMLAQN 610

Query: 282 LQSELRLSNSIIAMYSKCGDLDSS 305
           L+ +      ++ +  + G L  S
Sbjct: 611 LEPQQMHYACMVDLLGRSGQLTES 634


>gi|356567222|ref|XP_003551820.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Glycine max]
          Length = 887

 Score =  282 bits (721), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 177/621 (28%), Positives = 305/621 (49%), Gaps = 58/621 (9%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C+    S+ L+  Y K G++K A  +FD++  K+ +SW+ ++ GY  +G + + ++    
Sbjct: 259 CVFGVVSNSLIDMYSKCGEVKLAHQIFDQMWVKDDISWATMMAGYVHHGCYFEVLQLLDE 318

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL--------------- 106
           M    +  N  ++V  ++AA   ++LE  + +H   ++ G+ SD+               
Sbjct: 319 MKRKHIKMNKISVVNSVLAATETRDLEKGKEVHNYALQLGMTSDIVVATPIVSMYAKCGE 378

Query: 107 -------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                  F  L+   LV  +A ++  +      +A+ +F   +  GL P+   + +++  
Sbjct: 379 LKKAKEFFLSLEGRDLVVWSAFLSALVQAGYPGEALSIFQEMQHEGLKPDKTILSSLVSA 438

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C  + S  L +++H   IK  +  D+SV  +++ MY+       A+ +F  M  KDV++W
Sbjct: 439 CAEISSSRLGKMMHCYVIKADMGSDISVATTLVSMYTRCKSFMYAMTLFNRMHYKDVVAW 498

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
             ++  F        AL++F  ++ S +  D+  +++L+S  A+L DL  G   H  ++ 
Sbjct: 499 NTLINGFTKCGDPRLALEMFLRLQLSGVQPDSGTMVSLLSACALLDDLYLGICFHGNIIK 558

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE-KSLVSWTAIISGYVQNGCAREALN 338
            G++SE+ +  ++I MY+KCG L ++ ++F+     K  VSW  +I+GY+ NGCA EA++
Sbjct: 559 NGIESEMHVKVALIDMYAKCGSLCTAENLFHLNKHVKDEVSWNVMIAGYLHNGCANEAIS 618

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
            F +M+ E     + +T V+IL A   L+ L   +  H      GF     + N LI  Y
Sbjct: 619 TFNQMKLESVRP-NLVTFVTILPAVSYLSILREAMAFHACIIRMGFISSTLIGNSLIDMY 677

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
           +K G +  +   F EM   +  +SWN ++ GY ++G GE ALAL+  M ET    DS +Y
Sbjct: 678 AKSGQLSYSEKCFHEMEN-KGTISWNAMLSGYAMHGQGEVALALFSLMQETHVPVDSVSY 736

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
           +S+L+AC HAGL  +G  IF  M E++ ++PS EHY C+VDLL  AG   +   L  K+ 
Sbjct: 737 ISVLSACRHAGLIQEGRNIFQSMTEKHNLEPSMEHYACMVDLLGCAGLFDEVLCLIDKMP 796

Query: 519 EGMGPNIWRALLSGCVLH---------------------------------VGRFQDAEA 545
                 +W ALL  C +H                                  GR+ DA  
Sbjct: 797 TEPDAQVWGALLGACKMHSNVKLGEIALHHLLKLEPRNAVHYIVLSDIYAQCGRWIDARR 856

Query: 546 LRSGSQKKGIIKIPGISFLNS 566
            RS     G+ K PG S++ +
Sbjct: 857 TRSNMTDHGLKKNPGYSWVGA 877



 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 147/586 (25%), Positives = 299/586 (51%), Gaps = 26/586 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM- 62
           D +  + L+  Y K G +  A  +FD++P K+V SW+ +I G S +    ++++ F  M 
Sbjct: 161 DVFIGTGLVDMYCKMGHLDNARKVFDKMPGKDVASWNAMISGLSQSSNPCEALEIFQRMQ 220

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK---FGLESD-------------- 105
           M  G+ P+S +++ +  A + L++++  +SIHG +V+   FG+ S+              
Sbjct: 221 MEEGVEPDSVSILNLAPAVSRLEDVDSCKSIHGYVVRRCVFGVVSNSLIDMYSKCGEVKL 280

Query: 106 ---LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA 162
              +F+ +     +S   ++AG++++  + + + L +  +   +  N ++++  +     
Sbjct: 281 AHQIFDQMWVKDDISWATMMAGYVHHGCYFEVLQLLDEMKRKHIKMNKISVVNSVLAATE 340

Query: 163 LGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
                  + +H   ++LG+  D+ V   ++ MY+   +L  A + F  +E +D++ W+  
Sbjct: 341 TRDLEKGKEVHNYALQLGMTSDIVVATPIVSMYAKCGELKKAKEFFLSLEGRDLVVWSAF 400

Query: 223 MGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL 282
           +   V   Y G+AL IF+EM+   +  D   L +L+S  A +   + GK +H  V+   +
Sbjct: 401 LSALVQAGYPGEALSIFQEMQHEGLKPDKTILSSLVSACAEISSSRLGKMMHCYVIKADM 460

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
            S++ ++ ++++MY++C     + ++FN++  K +V+W  +I+G+ + G  R AL  F++
Sbjct: 461 GSDISVATTLVSMYTRCKSFMYAMTLFNRMHYKDVVAWNTLINGFTKCGDPRLALEMFLR 520

Query: 343 MRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
           ++       DS T+VS+L+A   L  L + +  HG   + G      V+  LI  Y+KCG
Sbjct: 521 LQLSGVQP-DSGTMVSLLSACALLDDLYLGICFHGNIIKNGIESEMHVKVALIDMYAKCG 579

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
           ++  A  +F     ++D VSWN +I GY  NG    A++ +++M      P+  T+++IL
Sbjct: 580 SLCTAENLFHLNKHVKDEVSWNVMIAGYLHNGCANEAISTFNQMKLESVRPNLVTFVTIL 639

Query: 463 NACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMG 522
            A  +  +  + +  F+  I       S      ++D+ A++G LS +     + +E  G
Sbjct: 640 PAVSYLSILREAMA-FHACIIRMGFISSTLIGNSLIDMYAKSGQLSYSEKCFHE-MENKG 697

Query: 523 PNIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFLNSTS 568
              W A+LSG  +H G+ + A AL S  Q+   + +  +S+++  S
Sbjct: 698 TISWNAMLSGYAMH-GQGEVALALFSLMQETH-VPVDSVSYISVLS 741



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 143/513 (27%), Positives = 257/513 (50%), Gaps = 38/513 (7%)

Query: 29  DEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLE 88
           + I   +++ W+ +I  YS     ++++K++  M   GL P+ +T   VL A  G  +  
Sbjct: 85  NSITNPSLILWNSLIRAYSRLHLFQEAIKSYQTMSYMGLEPDKYTFTFVLKACTGALDFH 144

Query: 89  LARSIHGLMVKFGLESDLF--EGLKNPY--------------------LVSCNAIVAGFI 126
              +IH  +    LE D+F   GL + Y                    + S NA+++G  
Sbjct: 145 EGVAIHQDIASRELECDVFIGTGLVDMYCKMGHLDNARKVFDKMPGKDVASWNAMISGLS 204

Query: 127 NNKLFQQAVLLFNFFR-GSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDV 185
            +    +A+ +F   +   G+ P++V++L +      L     C+ IHG  ++  +   V
Sbjct: 205 QSSNPCEALEIFQRMQMEEGVEPDSVSILNLAPAVSRLEDVDSCKSIHGYVVRRCVFGVV 264

Query: 186 SVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKS 245
           S  NS++DMYS   ++  A QIF +M  KD ISW  MM  +V      + L++  EM++ 
Sbjct: 265 S--NSLIDMYSKCGEVKLAHQIFDQMWVKDDISWATMMAGYVHHGCYFEVLQLLDEMKRK 322

Query: 246 RIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSS 305
            I  + ++++N +       DL++GK++H   +  G+ S++ ++  I++MY+KCG+L  +
Sbjct: 323 HIKMNKISVVNSVLAATETRDLEKGKEVHNYALQLGMTSDIVVATPIVSMYAKCGELKKA 382

Query: 306 RSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGE 365
           +  F  +  + LV W+A +S  VQ G   EAL+ F +M+ E     D   L S+++A  E
Sbjct: 383 KEFFLSLEGRDLVVWSAFLSALVQAGYPGEALSIFQEMQHEGLKP-DKTILSSLVSACAE 441

Query: 366 LAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNT 425
           +++  +   +H    +A      SV   L+S Y++C +   A  +F  M + +DVV+WNT
Sbjct: 442 ISSSRLGKMMHCYVIKADMGSDISVATTLVSMYTRCKSFMYAMTLFNRMHY-KDVVAWNT 500

Query: 426 IIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG-----HAGLTNDGLVIFNQ 480
           +I G+   G    AL ++ ++  +G  PDS T +S+L+AC      + G+   G +I N 
Sbjct: 501 LINGFTKCGDPRLALEMFLRLQLSGVQPDSGTMVSLLSACALLDDLYLGICFHGNIIKNG 560

Query: 481 MIEENKVKPSQEHYGCVVDLLARAGCLSDASGL 513
           +  E  VK +      ++D+ A+ G L  A  L
Sbjct: 561 IESEMHVKVA------LIDMYAKCGSLCTAENL 587


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  282 bits (721), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 177/612 (28%), Positives = 298/612 (48%), Gaps = 57/612 (9%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
            +KL+S + K   I EA  +F+ +  K  V +  ++ GY+ N     +++ +  M    +
Sbjct: 79  QTKLISLFCKFNSITEAARVFEPVEHKLDVLYHTMLKGYAKNSTLRDAVRFYERMRCDEV 138

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF-------------------- 107
           +P  +    +L  +    +L   R IHG+++  G +S+LF                    
Sbjct: 139 MPVVYDFTYLLQLSGENLDLRRGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYK 198

Query: 108 --EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
             E +    LVS N +VAG+  N   ++AV +    + +G  P+++T+++V+     L +
Sbjct: 199 MFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKA 258

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
             +   IHG   + G    V+V  ++LD Y     + +A  +F+ M  ++V+SW  M+  
Sbjct: 259 LRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDG 318

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +     + +A   F +M    +    V+++  +   A LGDL+RG+ +H  +    +  +
Sbjct: 319 YAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERGRYVHRLLDEKKIGFD 378

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           + + NS+I+MYSKC  +D + SVF  +  K++V+W A+I GY QNGC  EALN F +M Q
Sbjct: 379 VSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEM-Q 437

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
                 DS TLVS++TA  +L+       +HG+A      +   V   LI +++KCG + 
Sbjct: 438 SHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQ 497

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            A  +F+ M   R V++WN +I GYG NGHG  AL L+++M      P+  T+LS++ AC
Sbjct: 498 TARKLFDLMQ-ERHVITWNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAAC 556

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI 525
            H+GL  +G+  F  M E   ++P+ +HYG +VDLL RAG L DA      +    G  +
Sbjct: 557 SHSGLVEEGMYYFESMKENYGLEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKPGITV 616

Query: 526 WRALLSGCVLH---------------------------------VGRFQDAEALRSGSQK 552
             A+L  C +H                                    +     +R+  +K
Sbjct: 617 LGAMLGACRIHKNVELGEKTADELFDLDPDDGGYHVLLANMYASASMWDKVARVRTAMEK 676

Query: 553 KGIIKIPGISFL 564
           KGI K PG S +
Sbjct: 677 KGIQKTPGCSLV 688



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 99/313 (31%), Positives = 170/313 (54%), Gaps = 3/313 (0%)

Query: 175 LTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGD 234
           L IK G   +      ++ ++     +  A ++F  +E K  + +  M+  +       D
Sbjct: 66  LIIKNGFYNEHLFQTKLISLFCKFNSITEAARVFEPVEHKLDVLYHTMLKGYAKNSTLRD 125

Query: 235 ALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIA 294
           A++ +  MR   ++        L+ ++    DL+RG+++H  V+  G QS L    +++ 
Sbjct: 126 AVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREIHGMVITNGFQSNLFAMTAVVN 185

Query: 295 MYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSI 354
           +Y+KC  ++ +  +F ++ ++ LVSW  +++GY QNG AR A+   ++M QE     DSI
Sbjct: 186 LYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQM-QEAGQKPDSI 244

Query: 355 TLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM 414
           TLVS+L A  +L AL I   +HG AF AGF    +V   ++ +Y KCG+V  A +VF+ M
Sbjct: 245 TLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGM 304

Query: 415 GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDG 474
              R+VVSWNT+I GY  NG  E A A + KM + G  P + + +  L+AC + G    G
Sbjct: 305 SS-RNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERG 363

Query: 475 LVIFNQMIEENKV 487
             + +++++E K+
Sbjct: 364 RYV-HRLLDEKKI 375



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 99/198 (50%), Gaps = 2/198 (1%)

Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISG 326
           LK   Q+   ++  G  +E      +I+++ K   +  +  VF  +  K  V +  ++ G
Sbjct: 57  LKELHQILPLIIKNGFYNEHLFQTKLISLFCKFNSITEAARVFEPVEHKLDVLYHTMLKG 116

Query: 327 YVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPR 386
           Y +N   R+A+  + +MR ++   V       +L  SGE   L    ++HG+    GF  
Sbjct: 117 YAKNSTLRDAVRFYERMRCDEVMPV-VYDFTYLLQLSGENLDLRRGREIHGMVITNGFQS 175

Query: 387 YRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM 446
                  +++ Y+KC  ++ AY +FE M   RD+VSWNT++ GY  NG    A+ +  +M
Sbjct: 176 NLFAMTAVVNLYAKCRQIEDAYKMFERMP-QRDLVSWNTVVAGYAQNGFARRAVQVVLQM 234

Query: 447 TETGEVPDSSTYLSILNA 464
            E G+ PDS T +S+L A
Sbjct: 235 QEAGQKPDSITLVSVLPA 252


>gi|297828580|ref|XP_002882172.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297328012|gb|EFH58431.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 638

 Score =  281 bits (720), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 167/534 (31%), Positives = 281/534 (52%), Gaps = 32/534 (5%)

Query: 31  IPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELA 90
           + ++ +  W+ ++   S +   E+ M  FS M      P++FT+   L A   L+ ++  
Sbjct: 1   MTKRTLYQWNTLLKSLSRDKHWEQVMCHFSQMFRDEEKPDNFTLPVALKACGELREVKYG 60

Query: 91  RSIHGLMVK-FGLESDLFEG----------------------LKNPYLVSCNAIVAGFIN 127
             IHG + K   L SDL+ G                      L+ P +V+ +++V+GF  
Sbjct: 61  EMIHGFLKKNVTLGSDLYVGSSLIYMYVKCGRMTEALRMFNELEKPDIVTWSSMVSGFEK 120

Query: 128 NKLFQQAVLLFNFFR----GSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLIL 183
           N    QAV    FFR     S + P+ VT++T++  C  L +  L   +HG  ++ G   
Sbjct: 121 NGSPYQAV---EFFRRMATASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVMRRGFSN 177

Query: 184 DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMR 243
           D+S+ NS+L+ Y+       A+ +F+ M  KDVISW+ ++  +V    A +AL++F EM 
Sbjct: 178 DLSLVNSLLNCYAKSRAFKEAVNLFKMMAEKDVISWSTVIACYVQNGAAAEALRVFNEMI 237

Query: 244 KSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLD 303
                 +   +L ++   A   DL++G++ H   +  GL++E+++S +++ MY KC   +
Sbjct: 238 DDGTEPNVATVLCVLQACAAANDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKCFSPE 297

Query: 304 SSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTAS 363
            + +VF++I +K +VSW A+ISG+  NG A  ++ +F  M  E     D+I ++ +L + 
Sbjct: 298 EAYAVFSRIPKKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMLKVLGSC 357

Query: 364 GELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSW 423
            EL  L+     H    + GF     +   L+  YS+CG++  A  VF E+  L+D V W
Sbjct: 358 SELGFLKQAECFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNEIA-LKDTVVW 416

Query: 424 NTIIYGYGVNGHGETALALYHKMTETGEV-PDSSTYLSILNACGHAGLTNDGLVIFNQMI 482
            ++I GYG++G G  AL  ++ M  + EV P+  T+LSIL+AC HAGL ++GL IF  M+
Sbjct: 417 TSLITGYGIHGKGTKALETFNHMVRSSEVKPNEVTFLSILSACSHAGLIHEGLRIFELMV 476

Query: 483 EENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
            + ++ P+ EHY  +VDLL R G L  A  +  ++     P I   LL  C +H
Sbjct: 477 NDYRLAPNLEHYAVLVDLLGRVGELDTAIEITKRMPFSPTPQILGTLLGACRIH 530



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 127/495 (25%), Positives = 233/495 (47%), Gaps = 34/495 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM- 62
           D Y  S L+  Y K G++ EA  +F+E+ + ++V+WS ++ G+  NG   ++++ F  M 
Sbjct: 76  DLYVGSSLIYMYVKCGRMTEALRMFNELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMA 135

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
             S + P+  T++ ++ A   L N  L R +HG +++ G  +D                 
Sbjct: 136 TASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVMRRGFSNDLSLVNSLLNCYAKSRAF 195

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                LF+ +    ++S + ++A ++ N    +A+ +FN     G  PN  T+L V++ C
Sbjct: 196 KEAVNLFKMMAEKDVISWSTVIACYVQNGAAAEALRVFNEMIDDGTEPNVATVLCVLQAC 255

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
            A          H L I+ GL  +V V+ +++DMY      + A  +F  +  KDV+SW 
Sbjct: 256 AAANDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPKKDVVSWV 315

Query: 221 RMMGLFVDFEYAGDALKIFREM-RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
            ++  F     A  +++ F  M  ++    D + +L ++   + LG LK+ +  H+ V+ 
Sbjct: 316 ALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMLKVLGSCSELGFLKQAECFHSYVIK 375

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G  S   +  S++ +YS+CG L ++  VFN+I  K  V WT++I+GY  +G   +AL  
Sbjct: 376 YGFDSNPFIGASLVELYSRCGSLGNASKVFNEIALKDTVVWTSLITGYGIHGKGTKALET 435

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN-----CL 394
           F  M +      + +T +SIL+A      +   L++    FE     YR   N      L
Sbjct: 436 FNHMVRSSEVKPNEVTFLSILSACSHAGLIHEGLRI----FELMVNDYRLAPNLEHYAVL 491

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           +    + G +D A  + + M F        T++    ++ +GE A  +  ++ E  E   
Sbjct: 492 VDLLGRVGELDTAIEITKRMPFSPTPQILGTLLGACRIHQNGEMAETVAKQLFEL-ESNH 550

Query: 455 SSTYLSILNACGHAG 469
           +  Y+ + N  G  G
Sbjct: 551 AGYYMLMSNMYGVKG 565


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  281 bits (719), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 175/550 (31%), Positives = 286/550 (52%), Gaps = 24/550 (4%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           +KL+S + K G I EA  +F+ I +K    +  ++ GY+ N   E ++     M    + 
Sbjct: 85  TKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVK 144

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY------------ 114
           P  +    +L       +L+  + IHG ++     +++F   G+ N Y            
Sbjct: 145 PVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKM 204

Query: 115 --------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
                   LVS N I+AGF  N   ++A+ L    +  G  P+++T++TV+     +G  
Sbjct: 205 FDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLL 264

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
            + + IHG  I+ G    V+++ ++ DMYS    ++ A  IF  M+ K V+SW  MM  +
Sbjct: 265 MVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGY 324

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
           V       A+ +F +M +  I    V ++  +   A LGDL+RGK +H  V    L S++
Sbjct: 325 VQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDI 384

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            + NS+I+MYSKC  +D +  +FN +  ++ VSW A+I GY QNG   EALN F +M+  
Sbjct: 385 SVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSL 444

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
                DS T+VS++ A  EL+       +HG+   +   +   V   L+  YSKCG + +
Sbjct: 445 GMKP-DSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHM 503

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           A  +F +M   R V++WN +I GYG +G G  AL L+ KM +    P+  TYLS+++AC 
Sbjct: 504 ARKLF-DMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACS 562

Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIW 526
           H+GL ++GL  F  M ++  ++PS +HYG +VDLL RAG + +A      +    G  ++
Sbjct: 563 HSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVY 622

Query: 527 RALLSGCVLH 536
            A+L  C +H
Sbjct: 623 GAMLGACKIH 632



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 132/274 (48%), Gaps = 22/274 (8%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ L   Y K G ++ A  +FD + +K VVSW+ ++ GY  NG  EK++  F  M+  G+
Sbjct: 286 STALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGI 345

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL----------------------ESD 105
            P   T++  L A A L +LE  + +H  + +  L                       SD
Sbjct: 346 DPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASD 405

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F  L     VS NA++ G+  N    +A+  F+  +  G+ P++ TM++VI     L  
Sbjct: 406 IFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSV 465

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
               + IHGL I+  L  ++ V  +++DMYS    +  A ++F  +  + VI+W  M+  
Sbjct: 466 TRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDG 525

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLIS 259
           +        AL +F +M+K  +  + +  L++IS
Sbjct: 526 YGTHGLGRAALDLFDKMKKGAVEPNDITYLSVIS 559



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 101/204 (49%), Gaps = 2/204 (0%)

Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISG 326
           +K   Q+   V+  GL +E      +++++SK G ++ +  VF  I +K    +  ++ G
Sbjct: 62  MKELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKG 121

Query: 327 YVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPR 386
           Y +N     AL    +MR +    V       +L   G+ A L+   ++HG      F  
Sbjct: 122 YAKNSSLETALAFLCRMRYDDVKPV-VYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAA 180

Query: 387 YRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM 446
                  +++ Y+KC  +D AY +F+ M   RD+VSWNTII G+  NG  + AL L  +M
Sbjct: 181 NVFAMTGVVNMYAKCRQIDDAYKMFDRMP-ERDLVSWNTIIAGFSQNGFAKKALELVLRM 239

Query: 447 TETGEVPDSSTYLSILNACGHAGL 470
            + G+ PDS T +++L A    GL
Sbjct: 240 QDEGQRPDSITLVTVLPAAADVGL 263


>gi|297815974|ref|XP_002875870.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321708|gb|EFH52129.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 700

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 182/614 (29%), Positives = 295/614 (48%), Gaps = 59/614 (9%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML- 64
           ++++  L +   +G ++ A  +FD++P +++VSW+ +I GY      +++M  FS M + 
Sbjct: 35  FDTNSHLRSLINAGNLRVARQVFDKMPHRDIVSWTAIIKGYVTANNSDEAMILFSAMRVV 94

Query: 65  -SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGL------------- 110
              + P++  +  VL A     N+    S+H   VK  L S +F G              
Sbjct: 95  DPAVSPDTSVVSVVLKACGQSSNIAYGESLHAYAVKTSLLSSVFVGSSLLDMYKRVGKIE 154

Query: 111 -------KNPY--LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                  + P+   V+  AI+ G ++   +++ +  F+    S  + +  T    ++ C 
Sbjct: 155 KSCRVFSEMPFRNAVTWTAIITGLVHAGRYKEGLTYFSEMSSSEELSDTFTFAIALKACA 214

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            L      + IH   I  G    V V NS+  MY+   ++   + +F  M  +DV+SWT 
Sbjct: 215 GLRQVKYGKQIHTHVIVRGFDATVWVANSLATMYTECGEMRDGLCLFENMSERDVVSWTS 274

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++  +    +   A++ F +MR S++  +      + S  A L  L  G+QLH  V   G
Sbjct: 275 LIVAYNRIGHEEKAVETFIKMRNSQVPPNEQTFATMFSACASLSRLVWGEQLHCNVFSLG 334

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           L   L +SNS++ MYS CG LDS+  +F  +  + ++SW+ II GY Q G   EA   F 
Sbjct: 335 LNDSLSVSNSMMKMYSTCGKLDSASVLFQGMRCRDIISWSTIIGGYSQAGFGEEAFKYFS 394

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
            MRQ      D   L S+L+ SG +A LE   Q+H +AF  G  +  +V++ LI+ YSKC
Sbjct: 395 WMRQSGPKPTD-FALASLLSVSGNMAVLEGGRQVHALAFCFGLEQNSTVRSTLINMYSKC 453

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           GN+  A  +FEE     D+VS   +I GY  +G  + A+ L+ K  + G  PDS T++S+
Sbjct: 454 GNIKEASKIFEETD-RDDIVSLTAMINGYAEHGKSKEAIDLFEKSLKVGFSPDSVTFISV 512

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L AC H+G  + G   FN M E+  ++P++EHYGC+VDLL RAG LS+A  +  ++    
Sbjct: 513 LTACTHSGQLDLGFHYFNLMQEKYNMRPAKEHYGCMVDLLCRAGRLSEAEKMIDEMSWKK 572

Query: 522 GPNIWRALLSGCVLH---------------------------------VGRFQDAEALRS 548
              +W  LL  C                                     G  ++A  +R 
Sbjct: 573 DDVVWTTLLIACKAKGDIERGRRAAERILELDPTCATALVTLANIYSSTGNLEEAANVRK 632

Query: 549 GSQKKGIIKIPGIS 562
             + KG+IK PG S
Sbjct: 633 NMKAKGVIKEPGWS 646


>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
          Length = 713

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 185/619 (29%), Positives = 304/619 (49%), Gaps = 60/619 (9%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D   S+K L    K+G +  A  +FD++ +K+ +SW+ +I GY       +++  F +M 
Sbjct: 48  DLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMR 107

Query: 64  L-SGLLPNSFTMVGVLVAAAGLQ-NLELARSIHGLMVKFGLESDLFEG--LKNPY----- 114
           + SGL  + F ++ +   A GL  ++     +HG  VK GL + +F G  L + Y     
Sbjct: 108 VESGLRIDPF-ILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGK 166

Query: 115 ---------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                          +VS  AI+ G +     ++A++ F+    S +  ++ T    ++ 
Sbjct: 167 IFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKA 226

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C   G+      IH   +K G  +   V N++  MY+    L+  + +F +M  +DV+SW
Sbjct: 227 CADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSW 286

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           T ++   V       A++ F  MR+S +  +      +IS  A L  ++ G+QLHA ++ 
Sbjct: 287 TTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILH 346

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            GL + L + NSI+ MY+KCG L SS  +F+++T + +VSW+ II+GY Q G   EA   
Sbjct: 347 LGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQGGHVSEAFEL 406

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
              MR E     +   L S+L+A G +A LE   QLH      G      V + LI+ Y 
Sbjct: 407 LSWMRMEGPKPTE-FALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYC 465

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           KCG+++ A  +F+      D+VSW  +I GY  +G+    + L+ K+   G  PDS T++
Sbjct: 466 KCGSIEEASRIFDAAEN-DDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFI 524

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519
            +L+AC HAGL + G   FN M ++ ++ PS+EHYGC++DLL RAG LSDA  +   +  
Sbjct: 525 GVLSACSHAGLVDLGFHYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPF 584

Query: 520 GMGPNIWRALLSGCVLH---------------------------------VGRFQDAEAL 546
                +W  LL  C +H                                  G++++A  +
Sbjct: 585 HRDDVVWSTLLRACRVHGDVERGRRTAERILQLEPNCAGTHITLANIYASKGKWREAADI 644

Query: 547 RSGSQKKGIIKIPGISFLN 565
           R   + KG+IK PG S++ 
Sbjct: 645 RKLMKSKGVIKEPGWSWIK 663



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 132/282 (46%), Gaps = 28/282 (9%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +  + ++ L + Y K GK++    LF+++  ++VVSW+ +I      G  E +++AF  M
Sbjct: 250 VSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRM 309

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------- 106
             S + PN +T   V+   A L  +E    +H L++  GL + L                
Sbjct: 310 RESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQL 369

Query: 107 ------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                 F  +    +VS + I+AG+       +A  L ++ R  G  P    + +V+  C
Sbjct: 370 TSSSVIFHEMTRRDIVSWSTIIAGYXQGGHVSEAFELLSWMRMEGPKPTEFALASVLSAC 429

Query: 161 VALGSRALCE---LIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
              G+ A+ E    +H   + +GL     V +++++MY     ++ A +IF   E  D++
Sbjct: 430 ---GNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAENDDIV 486

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLIS 259
           SWT M+  + +  Y+ + + +F ++ +  +  D+V  + ++S
Sbjct: 487 SWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLS 528



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/202 (32%), Positives = 100/202 (49%), Gaps = 1/202 (0%)

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
           Q++L  SN  +    K G L ++R +F+++++K  +SWT +ISGYV    + EAL  F  
Sbjct: 46  QTDLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKN 105

Query: 343 MRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
           MR E    +D   L     A G  + +     LHG A + G      V + L+  Y+K G
Sbjct: 106 MRVESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNG 165

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
            +     VF EM  +R+VVSW  II G    G+ + AL  + +M  +    DS T+   L
Sbjct: 166 KIFEGRRVFHEMP-MRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIAL 224

Query: 463 NACGHAGLTNDGLVIFNQMIEE 484
            AC  +G  N G  I  Q +++
Sbjct: 225 KACADSGALNYGREIHAQAMKK 246


>gi|15235115|ref|NP_195663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75210987|sp|Q9SVA5.1|PP357_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g39530
 gi|5042169|emb|CAB44688.1| putative protein [Arabidopsis thaliana]
 gi|7270937|emb|CAB80616.1| putative protein [Arabidopsis thaliana]
 gi|332661682|gb|AEE87082.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 834

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 180/559 (32%), Positives = 288/559 (51%), Gaps = 36/559 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + L+  Y K G I  A  +FD +PEK+ V+W+ +I G    G    S++ F  +M
Sbjct: 182 DVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLM 241

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
              ++P+ + +  VL A + L  LE  + IH  ++++GLE D                  
Sbjct: 242 EDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVI 301

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               LF G+ N  ++S   +++G+  N L ++A+ LF      GL P+     +++  C 
Sbjct: 302 AAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCA 361

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYS---CLMDLDAAIQIFREMECKDVIS 218
           +L +      +H  TIK  L  D  V NS++DMY+   CL D   A ++F      DV+ 
Sbjct: 362 SLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTD---ARKVFDIFAAADVVL 418

Query: 219 WTRMM----GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
           +  M+     L   +E   +AL IFR+MR   I    +  ++L+  +A L  L   KQ+H
Sbjct: 419 FNAMIEGYSRLGTQWELH-EALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIH 477

Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
             +   GL  ++   +++I +YS C  L  SR VF+++  K LV W ++ +GYVQ     
Sbjct: 478 GLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENE 537

Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
           EALN F+++ Q   +  D  T  +++TA+G LA++++  + H    + G      + N L
Sbjct: 538 EALNLFLEL-QLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNAL 596

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           +  Y+KCG+ + A+  F+     RDVV WN++I  Y  +G G+ AL +  KM   G  P+
Sbjct: 597 LDMYAKCGSPEDAHKAFDSAAS-RDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPN 655

Query: 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLA 514
             T++ +L+AC HAGL  DGL  F  M+    ++P  EHY C+V LL RAG L+ A  L 
Sbjct: 656 YITFVGVLSACSHAGLVEDGLKQFELMLRFG-IEPETEHYVCMVSLLGRAGRLNKARELI 714

Query: 515 GKLLEGMGPNIWRALLSGC 533
            K+       +WR+LLSGC
Sbjct: 715 EKMPTKPAAIVWRSLLSGC 733



 Score =  191 bits (485), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 125/503 (24%), Positives = 236/503 (46%), Gaps = 27/503 (5%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+ +Y K G++  A  LF+ +P KN++SW+ ++ GY  N  H+++M+ F+ M   GL P+
Sbjct: 290 LIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPD 349

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFE 108
            +    +L + A L  L     +H   +K  L +D                      +F+
Sbjct: 350 MYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFD 409

Query: 109 GLKNPYLVSCNAIVAGFI---NNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
                 +V  NA++ G+          +A+ +F   R   + P+ +T ++++R   +L S
Sbjct: 410 IFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTS 469

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
             L + IHGL  K GL LD+   ++++D+YS    L  +  +F EM+ KD++ W  M   
Sbjct: 470 LGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAG 529

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +V      +AL +F E++ SR   D     N+++    L  ++ G++ H Q++  GL+  
Sbjct: 530 YVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECN 589

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
             ++N+++ MY+KCG  + +   F+    + +V W ++IS Y  +G  ++AL    KM  
Sbjct: 590 PYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMS 649

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
           E  +  + IT V +L+A      +E  L+   +    G         C++S   + G ++
Sbjct: 650 EGIEP-NYITFVGVLSACSHAGLVEDGLKQFELMLRFGIEPETEHYVCMVSLLGRAGRLN 708

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            A  + E+M      + W +++ G    G+ E A     +M    +  DS ++  + N  
Sbjct: 709 KARELIEKMPTKPAAIVWRSLLSGCAKAGNVELA-EHAAEMAILSDPKDSGSFTMLSNIY 767

Query: 466 GHAGLTNDGLVIFNQMIEENKVK 488
              G+  +   +  +M  E  VK
Sbjct: 768 ASKGMWTEAKKVRERMKVEGVVK 790



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 144/536 (26%), Positives = 262/536 (48%), Gaps = 31/536 (5%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D Y S+ L++ Y ++G +  A  +F+++PE+N+VSWS ++   + +G +E+S+  F   
Sbjct: 77  LDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLEF 136

Query: 63  MLSGL-LPNSFTMVGVLVAAAGL--QNLELARSIHGLMVKFGLESDLFEG--LKNPYLVS 117
             +    PN + +   + A +GL  +   +   +   +VK G + D++ G  L + YL  
Sbjct: 137 WRTRKDSPNEYILSSFIQACSGLDGRGRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKD 196

Query: 118 CNAIVAGFINNKLFQQAVL--------------------LFNFFRGSGLVPNAVTMLTVI 157
            N   A  + + L +++ +                    LF       +VP+   + TV+
Sbjct: 197 GNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVL 256

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
             C  L      + IH   ++ GL +D S+ N ++D Y     + AA ++F  M  K++I
Sbjct: 257 SACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNII 316

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           SWT ++  +       +A+++F  M K  +  D  A  ++++  A L  L  G Q+HA  
Sbjct: 317 SWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAYT 376

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA---R 334
           +   L ++  ++NS+I MY+KC  L  +R VF+      +V + A+I GY + G      
Sbjct: 377 IKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQWELH 436

Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
           EALN F  MR  +      +T VS+L AS  L +L +  Q+HG+ F+ G        + L
Sbjct: 437 EALNIFRDMRF-RLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSAL 495

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           I  YS C  +  + +VF+EM  ++D+V WN++  GY      E AL L+ ++  + E PD
Sbjct: 496 IDVYSNCYCLKDSRLVFDEMK-VKDLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPD 554

Query: 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
             T+ +++ A G+      G     Q+++   ++ +      ++D+ A+ G   DA
Sbjct: 555 EFTFANMVTAAGNLASVQLGQEFHCQLLKRG-LECNPYITNALLDMYAKCGSPEDA 609



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 131/491 (26%), Positives = 226/491 (46%), Gaps = 53/491 (10%)

Query: 93  IHGLMVKFGLESD----------------------LFEGLKNPYLVSCNAIVAGFINNKL 130
           +HG ++ +GLE D                      +FE +    LVS + +V+   ++ +
Sbjct: 66  VHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGI 125

Query: 131 FQQAVLLF-NFFRGSGLVPNAVTMLTVIRGCVALGSRA--LCELIHGLTIKLGLILDVSV 187
           +++++++F  F+R     PN   + + I+ C  L  R   +   +    +K G   DV V
Sbjct: 126 YEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDGRGRWMVFQLQSFLVKSGFDRDVYV 185

Query: 188 NNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRI 247
              ++D Y    ++D A  +F  +  K  ++WT M+   V    +  +L++F ++ +  +
Sbjct: 186 GTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNV 245

Query: 248 ICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRS 307
           + D   L  ++S  +IL  L+ GKQ+HA ++  GL+ +  L N +I  Y KCG + ++  
Sbjct: 246 VPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHK 305

Query: 308 VFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELA 367
           +FN +  K+++SWT ++SGY QN   +EA+  F  M +      D     SILT+   L 
Sbjct: 306 LFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKP-DMYACSSILTSCASLH 364

Query: 368 ALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
           AL    Q+H    +A       V N LI  Y+KC  +  A  VF+      DVV +N +I
Sbjct: 365 ALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFA-AADVVLFNAMI 423

Query: 428 YGY---GVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEE 484
            GY   G       AL ++  M      P   T++S+L A   A LT+ GL         
Sbjct: 424 EGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRAS--ASLTSLGL--------S 473

Query: 485 NKVKPSQEHYGCVVDLLARAG---------CLSDASGLAGKLLEGMGPNIWRALLSGCVL 535
            ++      YG  +D+ A +          CL D S L    ++     IW ++ +G   
Sbjct: 474 KQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKD-SRLVFDEMKVKDLVIWNSMFAG--- 529

Query: 536 HVGRFQDAEAL 546
           +V + ++ EAL
Sbjct: 530 YVQQSENEEAL 540



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 172/344 (50%), Gaps = 8/344 (2%)

Query: 171 LIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFE 230
           ++HG  I  GL LD  ++N ++++YS    +  A ++F +M  ++++SW+ M+       
Sbjct: 65  VVHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHG 124

Query: 231 YAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGK----QLHAQVVLGGLQSEL 286
              ++L +F E  ++R       +L+   + A  G   RG+    QL + +V  G   ++
Sbjct: 125 IYEESLVVFLEFWRTRKDSPNEYILSSF-IQACSGLDGRGRWMVFQLQSFLVKSGFDRDV 183

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            +   +I  Y K G++D +R VF+ + EKS V+WT +ISG V+ G +  +L  F ++ ++
Sbjct: 184 YVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMED 243

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
                D   L ++L+A   L  LE   Q+H      G     S+ N LI SY KCG V  
Sbjct: 244 NV-VPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIA 302

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           A+ +F  M   ++++SW T++ GY  N   + A+ L+  M++ G  PD     SIL +C 
Sbjct: 303 AHKLFNGMPN-KNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCA 361

Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
                  G  +    I+ N    S      ++D+ A+  CL+DA
Sbjct: 362 SLHALGFGTQVHAYTIKANLGNDSYVT-NSLIDMYAKCDCLTDA 404



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 86/184 (46%), Gaps = 22/184 (11%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  S L+  Y     +K++  +FDE+  K++V W+ +  GY     +E+++  F  +
Sbjct: 487 LDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLEL 546

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES---------DLFEGLKNP 113
            LS   P+ FT   ++ AA  L +++L +  H  ++K GLE          D++    +P
Sbjct: 547 QLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSP 606

Query: 114 Y-------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                         +V  N++++ + N+   ++A+ +       G+ PN +T + V+  C
Sbjct: 607 EDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSAC 666

Query: 161 VALG 164
              G
Sbjct: 667 SHAG 670


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 183/611 (29%), Positives = 306/611 (50%), Gaps = 59/611 (9%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+KL++ Y   G I  A   FD+I  K+V +W+ +I  Y+  G    ++  F+  + +  
Sbjct: 78  SAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISAYARIGHFHAAVDCFNEFLSTSF 137

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
           L +       ++ A G  NL+  R +H L++K G E D                      
Sbjct: 138 LQSDHYTFPPVIRACG--NLDDGRKVHCLVLKLGFECDVYIAASFIHFYSRFGFVSLACN 195

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           LF+ +    + + NA+++GF  N    +A+ +F+  R   +  ++VT+ +++  CV L  
Sbjct: 196 LFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQLDD 255

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
                LIH   IKLGL  D+ V N++++MY+   +L +A  IF +M+ +D++SW  ++  
Sbjct: 256 IISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAA 315

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG-GLQS 284
           F   +    AL ++ +M    ++ D + L++L SV A LG+    + +H  V        
Sbjct: 316 FEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLH 375

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           ++ L N+II MY+K G +DS+R VF  +  K ++SW ++I+GY QNG A EA++ +  MR
Sbjct: 376 DIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMR 435

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
                  +  T VSILTA  +L AL+  ++ HG   +        V  CL+  Y KCG +
Sbjct: 436 YYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLIKNFLYFDIFVSTCLVDMYGKCGKL 495

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
             A  +F E+   +  VSWN II  +G++G+G  A+ L+ +M   G  PD  T++S+L+A
Sbjct: 496 ADALSLFYEVPH-QSSVSWNAIISCHGLHGYGLKAVKLFKEMQSEGVKPDHITFVSLLSA 554

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C H+GL ++G   F  M E   ++PS +HYGC+VDL  RAG L  A      +      +
Sbjct: 555 CSHSGLVDEGQWCFQLMQETYGIRPSLKHYGCMVDLFGRAGHLEKAFNFVKNMPVRPDVS 614

Query: 525 IWRALLSGCVLH---------------------------------VGRFQDAEALRSGSQ 551
           +W ALL  C +H                                 +G ++  + +RS ++
Sbjct: 615 VWGALLGACRIHENVELVRTVSDHLLKVESENVGYYVLLSNIYAKLGHWEGVDEVRSLAR 674

Query: 552 KKGIIKIPGIS 562
            +G+ K PG S
Sbjct: 675 DRGLKKTPGWS 685



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 118/450 (26%), Positives = 228/450 (50%), Gaps = 28/450 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y ++  +  Y + G +  A NLFD +  +++ +W+ +I G+ +NG   ++++ F  M 
Sbjct: 173 DVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMR 232

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY------- 114
              +  +S T+  +L     L ++     IH   +K GLE DLF    L N Y       
Sbjct: 233 FKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELR 292

Query: 115 -------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                        +VS N+++A F  NK    A+ ++N     G+VP+ +T++++     
Sbjct: 293 SAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAA 352

Query: 162 ALGSRALCELIHG-LTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
            LG+      IHG +T +   + D+++ N+++DMY+ L  +D+A ++F  +  KDVISW 
Sbjct: 353 ELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWN 412

Query: 221 RMMGLFVDFEYAGDALKIFREMR-KSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
            ++  +     A +A+ ++  MR  S  + +    +++++ ++ LG LK+G + H Q++ 
Sbjct: 413 SLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLIK 472

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
             L  ++ +S  ++ MY KCG L  + S+F ++  +S VSW AIIS +  +G   +A+  
Sbjct: 473 NFLYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSSVSWNAIISCHGLHGYGLKAVKL 532

Query: 340 FIKMRQE--KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
           F +M+ E  K D +  ++L+S  + SG +   + C QL    +  G         C++  
Sbjct: 533 FKEMQSEGVKPDHITFVSLLSACSHSGLVDEGQWCFQLMQETY--GIRPSLKHYGCMVDL 590

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
           + + G+++ A+   + M    DV  W  ++
Sbjct: 591 FGRAGHLEKAFNFVKNMPVRPDVSVWGALL 620



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 156/303 (51%), Gaps = 6/303 (1%)

Query: 168 LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
           L + +H L +  G    + ++  +++ Y+ L D+  A   F +++ KDV +W  M+  + 
Sbjct: 58  LAKQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISAYA 117

Query: 228 DFEYAGDALKIFRE-MRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
              +   A+  F E +  S +  D      +I      G+L  G+++H  V+  G + ++
Sbjct: 118 RIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRA---CGNLDDGRKVHCLVLKLGFECDV 174

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            ++ S I  YS+ G +  + ++F+ +  + + +W A+ISG+  NG   EAL  F +MR  
Sbjct: 175 YIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMR-F 233

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
           K+ S+DS+T+ S+L    +L  +   + +H  A + G      V N LI+ Y+K G +  
Sbjct: 234 KSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRS 293

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           A  +F +M  +RD+VSWN+++  +  N     AL +Y+KM   G VPD  T +S+ +   
Sbjct: 294 AETIFNQMK-VRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAA 352

Query: 467 HAG 469
             G
Sbjct: 353 ELG 355


>gi|242076522|ref|XP_002448197.1| hypothetical protein SORBIDRAFT_06g022800 [Sorghum bicolor]
 gi|241939380|gb|EES12525.1| hypothetical protein SORBIDRAFT_06g022800 [Sorghum bicolor]
          Length = 766

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 171/555 (30%), Positives = 293/555 (52%), Gaps = 29/555 (5%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ L++ Y + G    A  +FD + ++N VSW+ VI  ++ N     +M  FS M+ SG 
Sbjct: 85  SNHLITMYGRCGAPDSARVVFDGMLDRNPVSWAAVIAAHAQNSRCADAMGLFSSMLRSGT 144

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL--------------------- 106
           +P+ F +   + A + L +L L R +H   +K+   SDL                     
Sbjct: 145 MPDQFALGSAICACSELGDLGLGRQVHAQAIKWESGSDLIVQNALVTMYSKSGSVGDGFA 204

Query: 107 -FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLV-PNAVTMLTVIRGC-VAL 163
            FE +++  L+S  +I+AG         A+ +F      G+  PN     +V R C V +
Sbjct: 205 LFERIRDKDLISWGSIIAGLAQQGREMDALQIFREMIAEGVHHPNEFHFGSVFRACSVVV 264

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
            S    E IHG+++K  L  +     S+ DMY+   +LD+A ++F  +E  D++SW  ++
Sbjct: 265 NSLEYGEQIHGVSVKYQLDRNSYAGCSLSDMYARCNELDSARKVFYRIESPDLVSWNSLI 324

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
             F       +A+ +F EMR S +  D + ++ L+        L +G+ +H+ +V  GL 
Sbjct: 325 NAFSAKGLLSEAMVLFSEMRDSGLRPDGITVMALLCACVGYDALHQGRSIHSYLVKLGLG 384

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
            ++ +SNS+++MY++C D  S+  VF++  ++ +V+W +I++  VQ+    +    F  +
Sbjct: 385 GDVIVSNSLLSMYARCLDFSSAMDVFHETHDRDVVTWNSILTACVQHQHLEDVFKLF-SL 443

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
                 S+D I+L ++L+AS EL   E+  Q+H  AF+ G      + N LI +Y+KCG+
Sbjct: 444 LHRSMPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKVGLVGDAMLSNGLIDTYAKCGS 503

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           +D A  +FE MG  RDV SW+++I GY   G+ + AL L+ +M   G  P+  T++ +L 
Sbjct: 504 LDDANKLFEIMGTGRDVFSWSSLIVGYAQFGYAKEALDLFARMRNLGVKPNHVTFVGVLT 563

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
           AC   GL ++G   ++ M  E  + P++EH  CV+DLLARAG LS+A+    ++     P
Sbjct: 564 ACSRVGLVDEGCYYYSIMKPEYGIVPTREHCSCVLDLLARAGRLSEAAKFVDQM--PFEP 621

Query: 524 NI--WRALLSGCVLH 536
           +I  W+ LL+    H
Sbjct: 622 DIIMWKTLLAASRTH 636



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/281 (30%), Positives = 146/281 (51%), Gaps = 4/281 (1%)

Query: 187 VNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSR 246
           ++N ++ MY      D+A  +F  M  ++ +SW  ++          DA+ +F  M +S 
Sbjct: 84  LSNHLITMYGRCGAPDSARVVFDGMLDRNPVSWAAVIAAHAQNSRCADAMGLFSSMLRSG 143

Query: 247 IICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSR 306
            + D  AL + I   + LGDL  G+Q+HAQ +     S+L + N+++ MYSK G +    
Sbjct: 144 TMPDQFALGSAICACSELGDLGLGRQVHAQAIKWESGSDLIVQNALVTMYSKSGSVGDGF 203

Query: 307 SVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTA-SGE 365
           ++F +I +K L+SW +II+G  Q G   +AL  F +M  E     +     S+  A S  
Sbjct: 204 ALFERIRDKDLISWGSIIAGLAQQGREMDALQIFREMIAEGVHHPNEFHFGSVFRACSVV 263

Query: 366 LAALEICLQLHGIAFEAGFPRYRSVQNCLISS-YSKCGNVDLAYIVFEEMGFLRDVVSWN 424
           + +LE   Q+HG++ +    R  S   C +S  Y++C  +D A  VF  +    D+VSWN
Sbjct: 264 VNSLEYGEQIHGVSVKYQLDR-NSYAGCSLSDMYARCNELDSARKVFYRIES-PDLVSWN 321

Query: 425 TIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
           ++I  +   G    A+ L+ +M ++G  PD  T +++L AC
Sbjct: 322 SLINAFSAKGLLSEAMVLFSEMRDSGLRPDGITVMALLCAC 362



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/348 (22%), Positives = 158/348 (45%), Gaps = 25/348 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           + Y    L   Y +  ++  A  +F  I   ++VSW+ +I+ +S  G   ++M  FS M 
Sbjct: 285 NSYAGCSLSDMYARCNELDSARKVFYRIESPDLVSWNSLINAFSAKGLLSEAMVLFSEMR 344

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL--------------------- 102
            SGL P+  T++ +L A  G   L   RSIH  +VK GL                     
Sbjct: 345 DSGLRPDGITVMALLCACVGYDALHQGRSIHSYLVKLGLGGDVIVSNSLLSMYARCLDFS 404

Query: 103 -ESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
              D+F    +  +V+ N+I+   + ++  +    LF+    S    + +++  V+    
Sbjct: 405 SAMDVFHETHDRDVVTWNSILTACVQHQHLEDVFKLFSLLHRSMPSLDRISLNNVLSASA 464

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC-KDVISWT 220
            LG   + + +H    K+GL+ D  ++N ++D Y+    LD A ++F  M   +DV SW+
Sbjct: 465 ELGYFEMVKQVHAYAFKVGLVGDAMLSNGLIDTYAKCGSLDDANKLFEIMGTGRDVFSWS 524

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++  +  F YA +AL +F  MR   +  + V  + +++  + +G +  G   ++ +   
Sbjct: 525 SLIVGYAQFGYAKEALDLFARMRNLGVKPNHVTFVGVLTACSRVGLVDEGCYYYSIMKPE 584

Query: 281 -GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISG 326
            G+       + ++ + ++ G L  +    +Q+  E  ++ W  +++ 
Sbjct: 585 YGIVPTREHCSCVLDLLARAGRLSEAAKFVDQMPFEPDIIMWKTLLAA 632


>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840 [Vitis vinifera]
          Length = 713

 Score =  280 bits (716), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 185/619 (29%), Positives = 304/619 (49%), Gaps = 60/619 (9%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D   S+K L    K+G +  A  +FD++ +K+ +SW+ +I GY       +++  F +M 
Sbjct: 48  DLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMR 107

Query: 64  L-SGLLPNSFTMVGVLVAAAGLQ-NLELARSIHGLMVKFGLESDLFEG--LKNPY----- 114
           + SGL  + F ++ +   A GL  ++     +HG  VK GL + +F G  L + Y     
Sbjct: 108 VESGLRIDPF-ILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGK 166

Query: 115 ---------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                          +VS  AI+ G +     ++A++ F+    S +  ++ T    ++ 
Sbjct: 167 IFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKA 226

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C   G+      IH   +K G  +   V N++  MY+    L+  + +F +M  +DV+SW
Sbjct: 227 CADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSW 286

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           T ++   V       A++ F  MR+S +  +      +IS  A L  ++ G+QLHA ++ 
Sbjct: 287 TTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILH 346

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            GL + L + NSI+ MY+KCG L SS  +F+++T + +VSW+ II+GY Q G   EA   
Sbjct: 347 LGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFEL 406

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
              MR E     +   L S+L+A G +A LE   QLH      G      V + LI+ Y 
Sbjct: 407 LSWMRMEGPKPTE-FALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYC 465

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           KCG+++ A  +F+      D+VSW  +I GY  +G+    + L+ K+   G  PDS T++
Sbjct: 466 KCGSIEEASRIFDAAEN-DDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFI 524

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519
            +L+AC HAGL + G   FN M ++ ++ PS+EHYGC++DLL RAG LSDA  +   +  
Sbjct: 525 GVLSACSHAGLVDLGFRYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPF 584

Query: 520 GMGPNIWRALLSGCVLH---------------------------------VGRFQDAEAL 546
                +W  LL  C +H                                  G++++A  +
Sbjct: 585 HRDDVVWSTLLRACRVHGDVERGRRTAERILQLEPNCAGTHITLANIYASKGKWREAADI 644

Query: 547 RSGSQKKGIIKIPGISFLN 565
           R   + KG+IK PG S++ 
Sbjct: 645 RKLMKSKGVIKEPGWSWIK 663



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 90/422 (21%), Positives = 186/422 (44%), Gaps = 52/422 (12%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +  + ++ L + Y K GK++    LF+++  ++VVSW+ +I      G  E +++AF  M
Sbjct: 250 VSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRM 309

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------- 106
             S + PN +T   V+   A L  +E    +H L++  GL + L                
Sbjct: 310 RESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQL 369

Query: 107 ------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                 F  +    +VS + I+AG+       +A  L ++ R  G  P    + +V+  C
Sbjct: 370 TSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTEFALASVLSAC 429

Query: 161 VALGSRALCE---LIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
              G+ A+ E    +H   + +GL     V +++++MY     ++ A +IF   E  D++
Sbjct: 430 ---GNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAENDDIV 486

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           SWT M+  + +  Y+ + + +F ++ +  +  D+V  + ++S  +  G +  G +     
Sbjct: 487 SWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGFRY---- 542

Query: 278 VLGGLQSELRLSNS------IIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAI-----IS 325
               +  + ++S S      +I +  + G L  +  +   +   +  V W+ +     + 
Sbjct: 543 -FNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRVH 601

Query: 326 GYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASG---ELAALEICLQLHGIAFEA 382
           G V+ G  R    + +++  E   +   ITL +I  + G   E A +   ++  G+  E 
Sbjct: 602 GDVERG--RRTAERILQL--EPNCAGTHITLANIYASKGKWREAADIRKLMKSKGVIKEP 657

Query: 383 GF 384
           G+
Sbjct: 658 GW 659



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/202 (32%), Positives = 100/202 (49%), Gaps = 1/202 (0%)

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
           Q++L  SN  +    K G L ++R +F+++++K  +SWT +ISGYV    + EAL  F  
Sbjct: 46  QTDLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKN 105

Query: 343 MRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
           MR E    +D   L     A G  + +     LHG A + G      V + L+  Y+K G
Sbjct: 106 MRVESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNG 165

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
            +     VF EM  +R+VVSW  II G    G+ + AL  + +M  +    DS T+   L
Sbjct: 166 KIFEGRRVFHEMP-MRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIAL 224

Query: 463 NACGHAGLTNDGLVIFNQMIEE 484
            AC  +G  N G  I  Q +++
Sbjct: 225 KACADSGALNYGREIHAQAMKK 246


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  280 bits (716), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 173/655 (26%), Positives = 322/655 (49%), Gaps = 90/655 (13%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + SS  ++ Y K   ++EA+ +FD +P ++VV+W+ +   Y   GF +K +  F  M+
Sbjct: 175 DVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMV 234

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY------- 114
           L G+ P+  T+  +L A + LQ+L+  ++IHG  +K G+  ++F    L N Y       
Sbjct: 235 LDGVKPDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVR 294

Query: 115 -------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                        +++ N++ + ++N    Q+ + +F     +G+ P+ + M +++  C 
Sbjct: 295 EAQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACS 354

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            L      + IHG  +K G++ DV V  +++++Y+  + +  A  +F  M  ++V++W  
Sbjct: 355 QLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNS 414

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           +   +V+  +    L +FREM  + +  D V +L+++   + L DLK GK +H   V  G
Sbjct: 415 LSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHG 474

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           +  ++ + N+++++Y+KC  +  ++ VF+ I  + + SW  I++ Y  N    + L  F 
Sbjct: 475 MVEDVFVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNGILTAYFTNKEYEKGLYMFS 534

Query: 342 KMRQE--KTDSV--------------------------------DSITLVSILTASGELA 367
           +M ++  K D +                                D  T+ SIL A     
Sbjct: 535 QMNRDEVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFKPDETTIYSILRACSLSE 594

Query: 368 ALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
            L +  ++H   F        +  N L+  Y+KCG + L+  VF+ M  ++DV SWNT+I
Sbjct: 595 CLRMGKEIHCYVFRHWKDWDLARTNALVDMYAKCGGLSLSRNVFDMMP-IKDVFSWNTMI 653

Query: 428 YGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKV 487
           +  G++G+G+ AL+L+ KM  +   PDS+T+  +L+AC H+ L  +G+ IFN M  ++ V
Sbjct: 654 FANGMHGNGKEALSLFEKMLLSMVKPDSATFTCVLSACSHSMLVEEGVQIFNSMSRDHLV 713

Query: 488 KPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH----------- 536
           +P  EHY CVVD+ +RAGCL +A G   ++        W+A L+GC ++           
Sbjct: 714 EPEAEHYTCVVDIYSRAGCLEEAYGFIQRMPMEPTAIAWKAFLAGCRVYKNVELAKISAK 773

Query: 537 ----------------------VGRFQDAEALRSGSQKKGIIKIPGISFLNSTSR 569
                                    + +A  +R   +++GI K PG S+ +  +R
Sbjct: 774 KLFEIDPNGSANYVTLFNILVTAKLWSEASKIRKLMKERGITKTPGCSWFHVGNR 828



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 126/489 (25%), Positives = 243/489 (49%), Gaps = 24/489 (4%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTM 74
           Y K   ++ A  +FD++  ++VV+W+ +   Y   GF ++ +  F  M L+ +  N  T+
Sbjct: 85  YGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVKANPLTV 144

Query: 75  VGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY------------------ 114
             +L   + LQ+L+  + IHG +V+ G+  D+F      N Y                  
Sbjct: 145 SSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLMPH 204

Query: 115 --LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELI 172
             +V+ N++ + ++N    Q+ + +F      G+ P+ VT+  ++  C  L      + I
Sbjct: 205 RDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGKAI 264

Query: 173 HGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYA 232
           HG  +K G++ +V V+N+++++Y   + +  A  +F  M  ++VI+W  +   +V+  + 
Sbjct: 265 HGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCYVNCGFP 324

Query: 233 GDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSI 292
              L +FREM  + +  D +A+ +++   + L DLK GK +H   V  G+  ++ +  ++
Sbjct: 325 QKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTAL 384

Query: 293 IAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVD 352
           + +Y+ C  +  +++VF+ +  +++V+W ++ S YV  G  ++ LN F +M        D
Sbjct: 385 VNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVKP-D 443

Query: 353 SITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFE 412
            +T++SIL A  +L  L+    +HG A   G      V N L+S Y+KC  V  A +VF+
Sbjct: 444 LVTMLSILHACSDLQDLKSGKVIHGFAVRHGMVEDVFVCNALLSLYAKCVCVREAQVVFD 503

Query: 413 EMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTN 472
            +   R+V SWN I+  Y  N   E  L ++ +M       D  T+  ++  C       
Sbjct: 504 LIPH-REVASWNGILTAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCVKNSRIE 562

Query: 473 DGLVIFNQM 481
           + + IF +M
Sbjct: 563 EAMEIFRKM 571



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 118/466 (25%), Positives = 222/466 (47%), Gaps = 35/466 (7%)

Query: 49  NGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL-- 106
           +G   +++K ++     G+ P+    + V  A A  ++    +  H    + G+ SD+  
Sbjct: 18  HGLPNEAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSI 77

Query: 107 --------------------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGL 146
                               F+ L    +V+ N++ A ++N    QQ +   N FR  GL
Sbjct: 78  GNAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGL---NVFRKMGL 134

Query: 147 ---VPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDA 203
                N +T+ +++ GC  L      + IHG  ++ G++ DV V+++ ++ Y+  + +  
Sbjct: 135 NKVKANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVRE 194

Query: 204 AIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAI 263
           A  +F  M  +DV++W  +   +V+  +    L +FREM    +  D V +  ++S  + 
Sbjct: 195 AQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSD 254

Query: 264 LGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAI 323
           L DLK GK +H   +  G+   + +SN+++ +Y  C  +  +++VF+ +  +++++W ++
Sbjct: 255 LQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSL 314

Query: 324 ISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG 383
            S YV  G  ++ LN F +M        D + + SIL A  +L  L+    +HG A + G
Sbjct: 315 ASCYVNCGFPQKGLNVFREMGLNGVKP-DPMAMSSILPACSQLKDLKSGKTIHGFAVKHG 373

Query: 384 FPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALY 443
                 V   L++ Y+ C  V  A  VF+ M   R+VV+WN++   Y   G  +  L ++
Sbjct: 374 MVEDVFVCTALVNLYANCLCVREAQTVFDLMPH-RNVVTWNSLSSCYVNCGFPQKGLNVF 432

Query: 444 HKMTETGEVPDSSTYLSILNACG-----HAGLTNDGLVIFNQMIEE 484
            +M   G  PD  T LSIL+AC       +G    G  + + M+E+
Sbjct: 433 REMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMVED 478



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 106/418 (25%), Positives = 206/418 (49%), Gaps = 15/418 (3%)

Query: 126 INNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDV 185
           I + L  +A+ ++   R  G+ P+    + V + C A       +  H    + G++ DV
Sbjct: 16  IPHGLPNEAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDV 75

Query: 186 SVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKS 245
           S+ N+ +  Y     ++ A ++F ++  +DV++W  +   +V+  +    L +FR+M  +
Sbjct: 76  SIGNAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLN 135

Query: 246 RIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSS 305
           ++  + + + +++   + L DLK GK++H  VV  G+  ++ +S++ +  Y+KC  +  +
Sbjct: 136 KVKANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREA 195

Query: 306 RSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGE 365
           ++VF+ +  + +V+W ++ S YV  G  ++ LN F +M  +     D +T+  IL+A  +
Sbjct: 196 QTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKP-DPVTVSCILSACSD 254

Query: 366 LAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNT 425
           L  L+    +HG A + G      V N L++ Y  C  V  A  VF+ M   R+V++WN+
Sbjct: 255 LQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPH-RNVITWNS 313

Query: 426 IIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH-----AGLTNDGLVIFNQ 480
           +   Y   G  +  L ++ +M   G  PD     SIL AC       +G T  G  + + 
Sbjct: 314 LASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHG 373

Query: 481 MIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVG 538
           M+E+  V  +      +V+L A   C+ +A  +   L+       W + LS C ++ G
Sbjct: 374 MVEDVFVCTA------LVNLYANCLCVREAQTVF-DLMPHRNVVTWNS-LSSCYVNCG 423


>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 821

 Score =  280 bits (716), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 176/557 (31%), Positives = 298/557 (53%), Gaps = 27/557 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDE--IPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           + + ++KL+  Y   G +  A N+FD+  +PE  V +   +I G+  N  H +  + F  
Sbjct: 78  ESFLAAKLIRVYSDLGFLGHARNVFDQCSLPETAVCN--AMIAGFLRNQQHMEVPRLFRM 135

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELA---------RSIH----------GLMVKFGL 102
           M    +  NS+T +  L A   L + E+          R  H            +VK G 
Sbjct: 136 MGSCDIEINSYTCMFALKACTDLLDDEVGMEIIRAAVRRGFHLHLYVGSSMVNFLVKRGY 195

Query: 103 ESD---LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
            +D   +F+G+    +V  N+I+ G++   LF +++ +F    G GL P+ VTM  +++ 
Sbjct: 196 LADAQKVFDGMPEKDVVCWNSIIGGYVQKGLFWESIQMFLEMIGGGLRPSPVTMANLLKA 255

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C   G + +    H   + LG+  DV V  S++DMYS L D  +A  +F  M  + +ISW
Sbjct: 256 CGQSGLKKVGMCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISW 315

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
             M+  +V      ++  +FR + +S    D+  L++LI   +   DL+ G+ LH+ ++ 
Sbjct: 316 NAMISGYVQNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGCSQTSDLENGRILHSCIIR 375

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
             L+S L LS +I+ MYSKCG +  +  VF ++ +K++++WTA++ G  QNG A +AL  
Sbjct: 376 KELESHLVLSTAIVDMYSKCGAIKQATIVFGRMGKKNVITWTAMLVGLSQNGYAEDALKL 435

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           F +M++EK  + +S+TLVS++     L +L     +H      G+     + + LI  Y+
Sbjct: 436 FCQMQEEKV-AANSVTLVSLVHCCAHLGSLTKGRTVHAHFIRHGYAFDAVITSALIDMYA 494

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           KCG +  A  +F     L+DV+  N++I GYG++GHG  AL +Y +M E    P+ +T++
Sbjct: 495 KCGKIHSAEKLFNNEFHLKDVILCNSMIMGYGMHGHGRYALGVYSRMIEERLKPNQTTFV 554

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519
           S+L AC H+GL  +G  +F+ M  ++ V+P  +HY C+VDL +RAG L +A  L  ++  
Sbjct: 555 SLLTACSHSGLVEEGKALFHSMERDHDVRPQHKHYACLVDLHSRAGRLEEADELVKQMPF 614

Query: 520 GMGPNIWRALLSGCVLH 536
               ++  ALLSGC  H
Sbjct: 615 QPSTDVLEALLSGCRTH 631



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 89/367 (24%), Positives = 164/367 (44%), Gaps = 16/367 (4%)

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           IH   IK  +  +  +   ++ +YS L  L  A  +F +    +      M+  F+  + 
Sbjct: 66  IHAQIIKNWVSTESFLAAKLIRVYSDLGFLGHARNVFDQCSLPETAVCNAMIAGFLRNQQ 125

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
             +  ++FR M    I  ++   +  +     L D + G ++    V  G    L + +S
Sbjct: 126 HMEVPRLFRMMGSCDIEINSYTCMFALKACTDLLDDEVGMEIIRAAVRRGFHLHLYVGSS 185

Query: 292 IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
           ++    K G L  ++ VF+ + EK +V W +II GYVQ G   E++  F++M        
Sbjct: 186 MVNFLVKRGYLADAQKVFDGMPEKDVVCWNSIIGGYVQKGLFWESIQMFLEMIGGGLRP- 244

Query: 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVF 411
             +T+ ++L A G+    ++ +  H      G      V   L+  YS  G+   A +VF
Sbjct: 245 SPVTMANLLKACGQSGLKKVGMCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAALVF 304

Query: 412 EEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLT 471
           + M   R ++SWN +I GY  NG    + AL+ ++ ++G   DS T +S++  C      
Sbjct: 305 DSMCS-RSLISWNAMISGYVQNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGCSQTSDL 363

Query: 472 NDGLVIFNQMIEENKVKPSQEHY---GCVVDLLARAGCLSDASGLAGKLLEGMGPN---I 525
            +G ++ + +I     K  + H      +VD+ ++ G +  A+ + G+    MG      
Sbjct: 364 ENGRILHSCIIR----KELESHLVLSTAIVDMYSKCGAIKQATIVFGR----MGKKNVIT 415

Query: 526 WRALLSG 532
           W A+L G
Sbjct: 416 WTAMLVG 422



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 103/205 (50%), Gaps = 2/205 (0%)

Query: 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
           K +HAQ++   + +E  L+  +I +YS  G L  +R+VF+Q +        A+I+G+++N
Sbjct: 64  KSIHAQIIKNWVSTESFLAAKLIRVYSDLGFLGHARNVFDQCSLPETAVCNAMIAGFLRN 123

Query: 331 GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV 390
               E    F +M       ++S T +  L A  +L   E+ +++   A   GF  +  V
Sbjct: 124 QQHMEVPRLF-RMMGSCDIEINSYTCMFALKACTDLLDDEVGMEIIRAAVRRGFHLHLYV 182

Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
            + +++   K G +  A  VF+ M   +DVV WN+II GY   G    ++ ++ +M   G
Sbjct: 183 GSSMVNFLVKRGYLADAQKVFDGMP-EKDVVCWNSIIGGYVQKGLFWESIQMFLEMIGGG 241

Query: 451 EVPDSSTYLSILNACGHAGLTNDGL 475
             P   T  ++L ACG +GL   G+
Sbjct: 242 LRPSPVTMANLLKACGQSGLKKVGM 266


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  280 bits (716), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 172/621 (27%), Positives = 304/621 (48%), Gaps = 59/621 (9%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + L+  Y +   +  A  +F+E+  ++ VSW+ +I GY  NGF E ++  +    
Sbjct: 155 DLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFR 214

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL------------FEGLK 111
           ++G++P+ FTM  VL+A   L  ++   ++HG++ K G+  D+            FE L+
Sbjct: 215 MTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLR 274

Query: 112 NPYLV----------SCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               V          + N ++ G+      + +V LF      G VP+ +++ + IR C 
Sbjct: 275 EARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLF-MDMIDGFVPDMLSITSTIRACG 333

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
             G   + + +H   I  G   D    N ++DMY+   DL AA ++F   +CKD ++W  
Sbjct: 334 QSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNS 393

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++  +    Y  + L+ F+ M+  R   D+V  + L+S+ + L D+ +G+ +H  V+  G
Sbjct: 394 LINGYTQSGYYKEGLESFKMMKMERKP-DSVTFVLLLSIFSQLADINQGRGIHCDVIKFG 452

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
            ++EL + NS++ +Y+KCG++D    VF+ ++   ++SW  +I+  V             
Sbjct: 453 FEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMIN 512

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +MR E     D  T++ IL     LA      ++HG  F++GF     + N LI  YSKC
Sbjct: 513 EMRTEGL-MPDEATVLGILPMCSLLAVRRQGKEIHGYIFKSGFESNVPIGNALIEMYSKC 571

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G+++    VF+ M   +DVV+W  +I  +G+ G G+ AL  +  M  +G +PDS  +++ 
Sbjct: 572 GSLENCIKVFKYMK-EKDVVTWTALISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAF 630

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           + AC H+G+  +GL  F++M  +  ++P  EHY CVVDLLAR+G L+ A      +    
Sbjct: 631 IFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLARSGLLAQAEEFILSMPMKP 690

Query: 522 GPNIWRALLSGCVLH---------------------------------VGRFQDAEALRS 548
             ++W ALLS C                                    +G++   + +R+
Sbjct: 691 DASLWGALLSACRARGNTNIAQRVSKKILELNSDDTGYYVLVSNIYATLGKWDQVKTVRN 750

Query: 549 GSQKKGIIKIPGISFLNSTSR 569
             + KG+ K PG S++    R
Sbjct: 751 SMKTKGLKKEPGSSWIEIQKR 771



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 139/490 (28%), Positives = 243/490 (49%), Gaps = 27/490 (5%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEI-PEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSG 66
           S KL+S Y +      + ++F  I P  NV  W+ +I   + NG   +++  ++ M    
Sbjct: 57  SGKLISKYAQVKDPISSVSVFRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKK 116

Query: 67  LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL-------------------- 106
           L P++FT   V+ + A + +LEL   +H   ++ G ESDL                    
Sbjct: 117 LQPDAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNAR 176

Query: 107 --FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
             FE + N   VS N++++G+ +N  ++ A+ +++ FR +G+VP+  TM +V+  C +L 
Sbjct: 177 YVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLM 236

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
           +      +HG+  K+G+  DV + N +L MY     L  A ++F +M  KD ++W  M+ 
Sbjct: 237 AVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMIC 296

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            +        ++K+F +M     + D +++ + I      GDL+ GK +H  ++  G + 
Sbjct: 297 GYAQLGRHEASVKLFMDMIDG-FVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFEC 355

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           +    N +I MY+KCGDL +++ VF+    K  V+W ++I+GY Q+G  +E L  F  M+
Sbjct: 356 DTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMK 415

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
            E+    DS+T V +L+   +LA +     +H    + GF     + N L+  Y+KCG +
Sbjct: 416 MERKP--DSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEM 473

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           D    VF  M    D++SWNT+I              + ++M   G +PD +T L IL  
Sbjct: 474 DDLLKVFSYMS-AHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPM 532

Query: 465 CGHAGLTNDG 474
           C    +   G
Sbjct: 533 CSLLAVRRQG 542



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 117/439 (26%), Positives = 208/439 (47%), Gaps = 31/439 (7%)

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE-SDLFEG--------LKNP------- 113
             F    +L   +  +N    R++H L++  GL  S +F G        +K+P       
Sbjct: 18  QEFLRSSLLKTLSSAKNTPQLRTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVF 77

Query: 114 ---------YLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
                    YL   N+I+    +N LF QA+  +   R   L P+A T  +VI  C  + 
Sbjct: 78  RSISPTNNVYL--WNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARIL 135

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
              L  ++H   +++G   D+ + N+++DMYS  +DLD A  +F EM  +D +SW  ++ 
Sbjct: 136 DLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLIS 195

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            +    +  DAL ++ + R + ++ D   + +++     L  +K G  +H  +   G+  
Sbjct: 196 GYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAG 255

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           ++ + N +++MY K   L  +R VF+++  K  V+W  +I GY Q G    ++  F+ M 
Sbjct: 256 DVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMI 315

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
                 + SIT  S + A G+   L++   +H     +GF       N LI  Y+KCG++
Sbjct: 316 DGFVPDMLSIT--STIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDL 373

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
             A  VF+     +D V+WN++I GY  +G+ +  L  + KM +    PDS T++ +L+ 
Sbjct: 374 LAAQEVFDTTK-CKDSVTWNSLINGYTQSGYYKEGLESF-KMMKMERKPDSVTFVLLLSI 431

Query: 465 CGHAGLTNDGLVIFNQMIE 483
                  N G  I   +I+
Sbjct: 432 FSQLADINQGRGIHCDVIK 450


>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
 gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
          Length = 805

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 166/548 (30%), Positives = 285/548 (52%), Gaps = 26/548 (4%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           LLS + + G +  A N+F  + E+++ SW++++ GY+  GF ++++  +  ++ +G+ P+
Sbjct: 75  LLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRILWAGIRPD 134

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFE 108
            +T   VL + AG  +L   R +H  +V+F  + D                      LF+
Sbjct: 135 VYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSARMLFD 194

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            +     +S NA+++G+  N    + + LF   R   + P+ +TM +VI  C  LG   L
Sbjct: 195 KMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACELLGDERL 254

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
              +H   ++     ++SV NS++ MY  +     A  +F  MEC+DV+SWT ++   VD
Sbjct: 255 GTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTIISGCVD 314

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
                 AL+ ++ M  +  + D V + +++S  A LG L  G +LH      G    + +
Sbjct: 315 NLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKLHELAERTGHILYVVV 374

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
           +NS+I MYSKC  ++ +  +F+QI +K ++SWT++I+G   N    EAL  F KM  +  
Sbjct: 375 ANSLIDMYSKCKRIEKALEIFHQIPDKDVISWTSVINGLRINNRCFEALIFFRKMILKSK 434

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
              +S+TL+S L+A   + AL    ++H  A +AG      + N ++  Y +CG +  A 
Sbjct: 435 P--NSVTLISALSACARVGALMCGKEIHAHALKAGMGFDGFLPNAILDLYVRCGRMRTAL 492

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
             F      +DV +WN ++ GY   G G   + L+ +M E+   PD  T++S+L AC  +
Sbjct: 493 NQFNLNE--KDVGAWNILLTGYAQKGKGAMVMELFKRMVESEINPDDVTFISLLCACSRS 550

Query: 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRA 528
           G+  +GL  F +M     + P+ +HY CVVDLL RAG L++A     ++     P IW A
Sbjct: 551 GMVTEGLEYFQRMKVNYHITPNLKHYACVVDLLGRAGKLNEAHEFIERMPIKPDPAIWGA 610

Query: 529 LLSGCVLH 536
           LL+ C +H
Sbjct: 611 LLNACRIH 618



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 132/506 (26%), Positives = 243/506 (48%), Gaps = 45/506 (8%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L++ Y K G +  A  LFD++P ++ +SW+ +I GY  N    + ++ F  M    + P+
Sbjct: 176 LITMYVKCGDVVSARMLFDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPD 235

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------------FE 108
             TM  V+ A   L +  L   +H  +V+   + ++                      F 
Sbjct: 236 LMTMTSVISACELLGDERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFS 295

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
           G++   +VS   I++G ++N L  +A+  +     +G +P+ VT+ +V+  C +LG   +
Sbjct: 296 GMECRDVVSWTTIISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDM 355

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM-GLFV 227
              +H L  + G IL V V NS++DMYS    ++ A++IF ++  KDVISWT ++ GL +
Sbjct: 356 GMKLHELAERTGHILYVVVANSLIDMYSKCKRIEKALEIFHQIPDKDVISWTSVINGLRI 415

Query: 228 DFEYAGDALKIFREM-RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
           +     +AL  FR+M  KS+   ++V L++ +S  A +G L  GK++HA  +  G+  + 
Sbjct: 416 N-NRCFEALIFFRKMILKSKP--NSVTLISALSACARVGALMCGKEIHAHALKAGMGFDG 472

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            L N+I+ +Y +CG + ++ + FN + EK + +W  +++GY Q G     +  F +M + 
Sbjct: 473 FLPNAILDLYVRCGRMRTALNQFN-LNEKDVGAWNILLTGYAQKGKGAMVMELFKRMVES 531

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN-----CLISSYSKC 401
           + +  D +T +S+L A      +   L+     F+     Y    N     C++    + 
Sbjct: 532 EINP-DDVTFISLLCACSRSGMVTEGLEY----FQRMKVNYHITPNLKHYACVVDLLGRA 586

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGH---GETALALYHKMTETGEVPDSSTY 458
           G ++ A+   E M    D   W  ++    ++ H   GE  LA  H   +  E      Y
Sbjct: 587 GKLNEAHEFIERMPIKPDPAIWGALLNACRIHRHVLLGE--LAAQHIFKQDAE--SIGYY 642

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEE 484
           + + N    +G  ++   +   M EE
Sbjct: 643 ILLCNLYADSGKWDEVAKVRRTMKEE 668



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 96/294 (32%), Positives = 151/294 (51%), Gaps = 2/294 (0%)

Query: 182 ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFRE 241
           +L V + N++L M+    D+  A  +F  M  +D+ SW  ++G +    +  +AL ++  
Sbjct: 66  LLSVRLGNALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHR 125

Query: 242 MRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGD 301
           +  + I  D     +++   A   DL RG+++HA VV      ++ + N++I MY KCGD
Sbjct: 126 ILWAGIRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGD 185

Query: 302 LDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILT 361
           + S+R +F+++  +  +SW A+ISGY +N    E L  F +MR+   D  D +T+ S+++
Sbjct: 186 VVSARMLFDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSIDP-DLMTMTSVIS 244

Query: 362 ASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVV 421
           A   L    +  QLH       +    SV N LI  Y   G+   A  VF  M   RDVV
Sbjct: 245 ACELLGDERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGME-CRDVV 303

Query: 422 SWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGL 475
           SW TII G   N   + AL  Y  M  TG +PD  T  S+L+AC   G  + G+
Sbjct: 304 SWTTIISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGM 357



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 84/356 (23%), Positives = 166/356 (46%), Gaps = 37/356 (10%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           I  YNS  L+  Y   G  KEAE++F  +  ++VVSW+ +I G   N   +K+++ +  M
Sbjct: 271 ISVYNS--LIQMYLSVGHWKEAESVFSGMECRDVVSWTTIISGCVDNLLPDKALETYKTM 328

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG--------------------L 102
            ++G +P+  T+  VL A A L  L++   +H L  + G                    +
Sbjct: 329 EITGTMPDEVTIASVLSACASLGQLDMGMKLHELAERTGHILYVVVANSLIDMYSKCKRI 388

Query: 103 ES--DLFEGLKNPYLVSCNAIVAGF-INNKLFQQAVLLFNFFRGSGL--VPNAVTMLTVI 157
           E   ++F  + +  ++S  +++ G  INN+ F+  +    FFR   L   PN+VT+++ +
Sbjct: 389 EKALEIFHQIPDKDVISWTSVINGLRINNRCFEALI----FFRKMILKSKPNSVTLISAL 444

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
             C  +G+    + IH   +K G+  D  + N++LD+Y     +  A+  F   E KDV 
Sbjct: 445 SACARVGALMCGKEIHAHALKAGMGFDGFLPNAILDLYVRCGRMRTALNQFNLNE-KDVG 503

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           +W  ++  +         +++F+ M +S I  D V  ++L+   +  G +  G +   ++
Sbjct: 504 AWNILLTGYAQKGKGAMVMELFKRMVESEINPDDVTFISLLCACSRSGMVTEGLEYFQRM 563

Query: 278 VLG-GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC 332
            +   +   L+    ++ +  + G L+ +    ++  E+  +     I G + N C
Sbjct: 564 KVNYHITPNLKHYACVVDLLGRAGKLNEA----HEFIERMPIKPDPAIWGALLNAC 615


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 184/619 (29%), Positives = 312/619 (50%), Gaps = 62/619 (10%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML-SG 66
           S +L++ Y   G +  +   FD+I  K+V +W+ +I  Y  NG   +++  F  ++L + 
Sbjct: 111 SIRLVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTK 170

Query: 67  LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--------------------- 105
              + +T   VL A    Q L   R IH  + K G + D                     
Sbjct: 171 FQADFYTFPPVLKAC---QTLVDGRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIAR 227

Query: 106 -LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
            LF+ +    + S NA+++G I N    QA+ + +  R  G+  ++VT+ +++  C  LG
Sbjct: 228 SLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLG 287

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
             +   LIH   IK GL  ++ V+N++++MY+   +L  A ++F++M  +DV+SW  ++ 
Sbjct: 288 DISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIA 347

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL-GGLQ 283
            +   +    A   F +M+ + +  D + L++L S+ A   D K  + +H  ++  G L 
Sbjct: 348 AYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLM 407

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
             + + N+++ MY+K G +DS+  VFN I  K +VSW  +ISGY QNG A EA+  +  M
Sbjct: 408 EAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMM 467

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
            + +   ++  T VSIL A   + AL+  +++HG   +        V  CLI  Y KCG 
Sbjct: 468 EECREIKLNQGTWVSILAAYAHVGALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGR 527

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           +  A  +F ++      V WN II  +G++GHGE AL L+ +M + G  PD  T++S+L+
Sbjct: 528 LVDAMCLFYQVP-RESSVPWNAIISCHGIHGHGEKALKLFREMQDEGVKPDHVTFISLLS 586

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
           AC H+GL ++G   F+ +++E  +KPS +HYGC+VDLL RAG L  A      +      
Sbjct: 587 ACSHSGLVDEGKWFFH-LMQEYGIKPSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPDA 645

Query: 524 NIWRALLSGCVLH---------------------------------VGRFQDAEALRSGS 550
           +IW ALL  C +H                                 VG+++  + +RS +
Sbjct: 646 SIWGALLGACRIHGNIELGKFASDRLFEVDSENVGYYVLLSNIYANVGKWEGVDKVRSLA 705

Query: 551 QKKGIIKIPGISFLNSTSR 569
           +++G+ K PG S +    R
Sbjct: 706 RERGLKKTPGWSSIEVNRR 724



 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 145/510 (28%), Positives = 252/510 (49%), Gaps = 31/510 (6%)

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAI 121
           +++SG + ++F  + ++   A L ++ L+R               F+ ++   + + N++
Sbjct: 99  LVVSGKIQSNFISIRLVNLYASLGDVSLSRGT-------------FDQIQRKDVYTWNSM 145

Query: 122 VAGFINNKLFQQAV-LLFNFFRGSGLVPNAVTMLTVIRGCVAL--GSRALCELIHGLTIK 178
           ++ ++ N  F++A+   +     +    +  T   V++ C  L  G +     IH    K
Sbjct: 146 ISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLVDGRK-----IHCWVFK 200

Query: 179 LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKI 238
           LG   DV V  S++ MYS    +  A  +F +M  +D+ SW  M+   +    A  AL +
Sbjct: 201 LGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDV 260

Query: 239 FREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSK 298
             EMR   I  D+V + +++ V A LGD+     +H  V+  GL+ EL +SN++I MY+K
Sbjct: 261 LDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAK 320

Query: 299 CGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVS 358
            G+L  ++ VF Q+  + +VSW +II+ Y QN     A   F KM+    +  D +TLVS
Sbjct: 321 FGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEP-DLLTLVS 379

Query: 359 ILTASGELAALEICLQLHGIAFEAGFPRYRSV-QNCLISSYSKCGNVDLAYIVFEEMGFL 417
           + + + +    +    +HG     G+     V  N ++  Y+K G +D A+ VF  +  +
Sbjct: 380 LASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIP-V 438

Query: 418 RDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNACGHAGLTNDGLV 476
           +DVVSWNT+I GY  NG    A+ +Y  M E  E+  +  T++SIL A  H G    G+ 
Sbjct: 439 KDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMR 498

Query: 477 IFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL-LEGMGPNIWRALLSGCVL 535
           I   +I+ N +        C++DL  + G L DA  L  ++  E   P  W A++S   +
Sbjct: 499 IHGHLIKTN-LHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVP--WNAIISCHGI 555

Query: 536 HVGRFQDAEALRSGSQKKGIIKIPGISFLN 565
           H G  + A  L    Q +G +K   ++F++
Sbjct: 556 H-GHGEKALKLFREMQDEG-VKPDHVTFIS 583



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 117/460 (25%), Positives = 228/460 (49%), Gaps = 29/460 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + ++ L+  Y + G +  A +LFD++P +++ SW+ +I G   NG   +++     M 
Sbjct: 206 DVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMR 265

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY------- 114
           L G+  +S T+  +L   A L ++  A  IH  ++K GLE +LF    L N Y       
Sbjct: 266 LEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNLG 325

Query: 115 -------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                        +VS N+I+A +  N     A   F   + +GL P+ +T++++    +
Sbjct: 326 DAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSL--ASI 383

Query: 162 ALGSRAL--CELIHGLTIKLGLILD-VSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
           A  SR       +HG  ++ G +++ V + N+V+DMY+ L  +D+A ++F  +  KDV+S
Sbjct: 384 AAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVS 443

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSR-IICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           W  ++  +     A +A++++R M + R I  +    +++++  A +G L++G ++H  +
Sbjct: 444 WNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRIHGHL 503

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           +   L  ++ +   +I +Y KCG L  +  +F Q+  +S V W AIIS +  +G   +AL
Sbjct: 504 IKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNAIISCHGIHGHGEKAL 563

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
             F +M+ E     D +T +S+L+A      ++       +  E G         C++  
Sbjct: 564 KLFREMQDEGVKP-DHVTFISLLSACSHSGLVDEGKWFFHLMQEYGIKPSLKHYGCMVDL 622

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGE 437
             + G +++AY   ++M    D   W  ++    ++G+ E
Sbjct: 623 LGRAGFLEMAYDFIKDMPLHPDASIWGALLGACRIHGNIE 662



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 102/366 (27%), Positives = 183/366 (50%), Gaps = 7/366 (1%)

Query: 168 LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
           L + +H L +  G I    ++  ++++Y+ L D+  +   F +++ KDV +W  M+  +V
Sbjct: 91  LAKRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAYV 150

Query: 228 DFEYAGDALKIFRE-MRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
              +  +A+  F + +  ++   D      ++     L D   G+++H  V   G Q ++
Sbjct: 151 RNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLVD---GRKIHCWVFKLGFQWDV 207

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            ++ S+I MYS+ G +  +RS+F+ +  + + SW A+ISG +QNG A +AL+   +MR E
Sbjct: 208 FVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLE 267

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
             + +DS+T+ SIL    +L  +     +H    + G      V N LI+ Y+K GN+  
Sbjct: 268 GIN-MDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGD 326

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           A  VF++M FLRDVVSWN+II  Y  N    TA   + KM   G  PD  T +S+ +   
Sbjct: 327 AQKVFQQM-FLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAA 385

Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIW 526
            +    +   +   ++    +  +      V+D+ A+ G + D++     L+       W
Sbjct: 386 QSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVI-DSAHKVFNLIPVKDVVSW 444

Query: 527 RALLSG 532
             L+SG
Sbjct: 445 NTLISG 450



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 79/365 (21%), Positives = 152/365 (41%), Gaps = 70/365 (19%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  + L+  Y K G++ +A  LF ++P ++ V W+ +I  + I+G  EK++K F  M
Sbjct: 510 LDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNAIISCHGIHGHGEKALKLFREM 569

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIV 122
              G+ P+  T + +L A +    ++  +    LM ++G++         P L     +V
Sbjct: 570 QDEGVKPDHVTFISLLSACSHSGLVDEGKWFFHLMQEYGIK---------PSLKHYGCMV 620

Query: 123 -----AGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTI 177
                AGF+         + ++F +   L P+A     ++  C           IHG  I
Sbjct: 621 DLLGRAGFLE--------MAYDFIKDMPLHPDASIWGALLGAC----------RIHG-NI 661

Query: 178 KLGLILD---VSVNNSVLDMYSCLMDL----------DAAIQIFREMECKDVISWTRM-M 223
           +LG         V++  +  Y  L ++          D    + RE   K    W+ + +
Sbjct: 662 ELGKFASDRLFEVDSENVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSSIEV 721

Query: 224 GLFVDFEYAGDA-----LKIFREMRKSRIICDTVALLNLI-SVNAILGDLKRGKQLHAQV 277
              VD  Y G+       +I+ E+   RI+   +  L  I   + +L D++  ++ H   
Sbjct: 722 NRRVDIFYTGNQSHPKCKEIYAEL---RILTAKMKSLGYIPDYSFVLQDVEEDEKEH--- 775

Query: 278 VLGGLQSELRLSNSIIAMYSK-----------CGDLDSSRSVFNQITEKSLVSWTAIISG 326
           +L      L ++  II+   K           CGD  ++    ++ITE+ +V   +    
Sbjct: 776 ILTSHSERLAIAFGIISTPPKSAIRIFKNLRVCGDCHNATKFISRITEREIVVRDSKRFH 835

Query: 327 YVQNG 331
           + +NG
Sbjct: 836 HFKNG 840


>gi|297805814|ref|XP_002870791.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316627|gb|EFH47050.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 674

 Score =  279 bits (714), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 182/614 (29%), Positives = 308/614 (50%), Gaps = 61/614 (9%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL- 67
           S L   Y   G I  A  LFDE+P+ +++S++IVI  Y  +G +  ++  F  M+  G+ 
Sbjct: 53  STLSVTYALCGHIAYARKLFDEMPQSSLLSYNIVIRMYVRDGLYHDAINVFIRMVSEGIK 112

Query: 68  -LPNSFTMVGVLVAAAGLQNLELARSIHGLMVK--FGLES-------------------- 104
            +P+ +T   V  AA  L+++ L   IHG +++  FG++                     
Sbjct: 113 CVPDGYTYPFVAKAAGELKSISLGLVIHGRILRSWFGMDKYVQNALLAMYMNFGRVEMAR 172

Query: 105 DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
           ++F+ +KN  ++S N +++G+  N     A+++F++    G+ P+  T+++++  C  L 
Sbjct: 173 NVFDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNEGVDPDHATIVSMLPVCGHLK 232

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
              +   +H L  +  L   + V N++++MY     +D A  +F  ME +DVI+WT M+ 
Sbjct: 233 GLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFGRMERRDVITWTCMIN 292

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            +++     +AL++ R M+   +  + V + +L+S       L  GK LH   +   + S
Sbjct: 293 GYIEDGDVENALELCRLMQFEGVRPNAVTIASLVSACGDALKLNDGKCLHGWAIRQKVCS 352

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           ++ +  S+I+MY+KC  +D    VF+  +      W+AII+G VQN   R+AL+ F +MR
Sbjct: 353 DIIIETSLISMYAKCKHIDLCFRVFSGASRNHTGPWSAIIAGCVQNELVRDALDLFKRMR 412

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
           +E  +  +  TL S+L A   LA L   + +H    + GF         L+  YSKCG +
Sbjct: 413 REDVEP-NIATLNSLLPAYATLADLRQTMNIHCYLTKTGFMSSLDAATGLVHVYSKCGTL 471

Query: 405 DLAYIVF---EEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           + A+ +F   +E    +DVV W  +I GYG++G G  AL ++ +M  +G  P+  T+ S 
Sbjct: 472 ESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNEITFTSA 531

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           LNAC H+GL  +GL +F+ M+E  K      HY C+VDLL RAG L +A  L   +    
Sbjct: 532 LNACSHSGLVEEGLTLFSFMLEHYKTLARSNHYTCIVDLLGRAGRLDEAYNLITTIPFEP 591

Query: 522 GPNIWRALLSGCVLH---------------------------------VGRFQDAEALRS 548
              IW ALL+ CV H                                 +GR++D E +R+
Sbjct: 592 TSTIWGALLAACVTHENVQLGEMAANKLFELEPENTGNYVLLANIYAALGRWKDMEKVRN 651

Query: 549 GSQKKGIIKIPGIS 562
             +  G+ K PG S
Sbjct: 652 MMENVGLRKKPGHS 665



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 117/452 (25%), Positives = 211/452 (46%), Gaps = 28/452 (6%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D Y  + LL+ Y   G+++ A N+FD +  ++V+SW+ +I GY  NG+   ++  F  M
Sbjct: 150 MDKYVQNALLAMYMNFGRVEMARNVFDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWM 209

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLM--VKFGLESDLFEGLKNPYL----- 115
           +  G+ P+  T+V +L     L+ LE+ R++H L+   + G + ++   L N YL     
Sbjct: 210 VNEGVDPDHATIVSMLPVCGHLKGLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRM 269

Query: 116 ---------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                          ++   ++ G+I +   + A+ L    +  G+ PNAVT+ +++  C
Sbjct: 270 DEARFVFGRMERRDVITWTCMINGYIEDGDVENALELCRLMQFEGVRPNAVTIASLVSAC 329

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
                    + +HG  I+  +  D+ +  S++ MY+    +D   ++F          W+
Sbjct: 330 GDALKLNDGKCLHGWAIRQKVCSDIIIETSLISMYAKCKHIDLCFRVFSGASRNHTGPWS 389

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++   V  E   DAL +F+ MR+  +  +   L +L+   A L DL++   +H  +   
Sbjct: 390 AIIAGCVQNELVRDALDLFKRMRREDVEPNIATLNSLLPAYATLADLRQTMNIHCYLTKT 449

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE----KSLVSWTAIISGYVQNGCAREA 336
           G  S L  +  ++ +YSKCG L+S+  +FN I E    K +V W A+ISGY  +G    A
Sbjct: 450 GFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNA 509

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ-NCLI 395
           L  F++M +    + + IT  S L A      +E  L L     E      RS    C++
Sbjct: 510 LQVFMEMVRSGV-TPNEITFTSALNACSHSGLVEEGLTLFSFMLEHYKTLARSNHYTCIV 568

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
               + G +D AY +   + F      W  ++
Sbjct: 569 DLLGRAGRLDEAYNLITTIPFEPTSTIWGALL 600



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 87/294 (29%), Positives = 156/294 (53%), Gaps = 5/294 (1%)

Query: 242 MRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGD 301
           +R+++         +L++  A    + + K LH  V+ GG  S   LS ++   Y+ CG 
Sbjct: 6   LRRAKNALSVKQYQSLLNHYAATQSISKTKALHCHVITGGRVSGHILS-TLSVTYALCGH 64

Query: 302 LDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV-DSITLVSIL 360
           +  +R +F+++ + SL+S+  +I  YV++G   +A+N FI+M  E    V D  T   + 
Sbjct: 65  IAYARKLFDEMPQSSLLSYNIVIRMYVRDGLYHDAINVFIRMVSEGIKCVPDGYTYPFVA 124

Query: 361 TASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDV 420
            A+GEL ++ + L +HG    + F   + VQN L++ Y   G V++A  VF+ M   RDV
Sbjct: 125 KAAGELKSISLGLVIHGRILRSWFGMDKYVQNALLAMYMNFGRVEMARNVFDVMKN-RDV 183

Query: 421 VSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQ 480
           +SWNT+I GY  NG+   AL ++  M   G  PD +T +S+L  CGH      G  + ++
Sbjct: 184 ISWNTMISGYYRNGYMNDALMMFDWMVNEGVDPDHATIVSMLPVCGHLKGLEMGRNV-HK 242

Query: 481 MIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCV 534
           ++EE ++    E    +V++  + G + +A  + G+ +E      W  +++G +
Sbjct: 243 LVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFGR-MERRDVITWTCMINGYI 295



 Score = 47.4 bits (111), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 89/226 (39%), Gaps = 32/226 (14%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C D    + L+S Y K   I     +F      +   WS +I G   N     ++  F  
Sbjct: 351 CSDIIIETSLISMYAKCKHIDLCFRVFSGASRNHTGPWSAIIAGCVQNELVRDALDLFKR 410

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL--------------- 106
           M    + PN  T+  +L A A L +L    +IH  + K G  S L               
Sbjct: 411 MRREDVEPNIATLNSLLPAYATLADLRQTMNIHCYLTKTGFMSSLDAATGLVHVYSKCGT 470

Query: 107 -------FEGLKNPY----LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLT 155
                  F G++  +    +V   A+++G+  +     A+ +F     SG+ PN +T  +
Sbjct: 471 LESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNEITFTS 530

Query: 156 VIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDL 201
            +  C   G   L E   GLT+    +L+     +  + Y+C++DL
Sbjct: 531 ALNACSHSG---LVE--EGLTL-FSFMLEHYKTLARSNHYTCIVDL 570


>gi|449480326|ref|XP_004155862.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 939

 Score =  279 bits (714), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 172/621 (27%), Positives = 304/621 (48%), Gaps = 59/621 (9%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + L+  Y +   +  A  +F+E+  ++ VSW+ +I GY  NGF E ++  +    
Sbjct: 155 DLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFR 214

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL------------FEGLK 111
           ++G++P+ FTM  VL+A   L  ++   ++HG++ K G+  D+            FE L+
Sbjct: 215 MTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLR 274

Query: 112 NPYLV----------SCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               V          + N ++ G+      + +V LF      G VP+ +++ + IR C 
Sbjct: 275 EARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLF-MDMIDGFVPDMLSITSTIRACG 333

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
             G   + + +H   I  G   D    N ++DMY+   DL AA ++F   +CKD ++W  
Sbjct: 334 QSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNS 393

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++  +    Y  + L+ F+ M+  R   D+V  + L+S+ + L D+ +G+ +H  V+  G
Sbjct: 394 LINGYTQSGYYKEGLESFKMMKMERKP-DSVTFVLLLSIFSQLADINQGRGIHCDVIKFG 452

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
            ++EL + NS++ +Y+KCG++D    VF+ ++   ++SW  +I+  V             
Sbjct: 453 FEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMIN 512

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +MR E     D  T++ IL     LA      ++HG  F++GF     + N LI  YSKC
Sbjct: 513 EMRTEGL-MPDEATVLGILPMCSLLAVRRQGKEIHGYIFKSGFESNVPIGNALIEMYSKC 571

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G+++    VF+ M   +DVV+W  +I  +G+ G G+ AL  +  M  +G +PDS  +++ 
Sbjct: 572 GSLENCIKVFKYMK-EKDVVTWTALISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAF 630

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           + AC H+G+  +GL  F++M  +  ++P  EHY CVVDLLAR+G L+ A      +    
Sbjct: 631 IFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLARSGLLAQAEEFILSMPMKP 690

Query: 522 GPNIWRALLSGCVLH---------------------------------VGRFQDAEALRS 548
             ++W ALLS C                                    +G++   + +R+
Sbjct: 691 DASLWGALLSACRARGNTNIAQRVSKKILELNSDDTGYYVLVSNIYATLGKWDQVKTVRN 750

Query: 549 GSQKKGIIKIPGISFLNSTSR 569
             + KG+ K PG S++    R
Sbjct: 751 SMKTKGLKKEPGSSWIEIQKR 771



 Score =  212 bits (540), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 139/490 (28%), Positives = 243/490 (49%), Gaps = 27/490 (5%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEI-PEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSG 66
           S KL+S Y +      + ++F  I P  NV  W+ +I   + NG   +++  ++ M    
Sbjct: 57  SGKLISKYAQVKDPISSVSVFRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKK 116

Query: 67  LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL-------------------- 106
           L P++FT   V+ + A + +LEL   +H   ++ G ESDL                    
Sbjct: 117 LQPDAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNAR 176

Query: 107 --FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
             FE + N   VS N++++G+ +N  ++ A+ +++ FR +G+VP+  TM +V+  C +L 
Sbjct: 177 YVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLM 236

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
           +      +HG+  K+G+  DV + N +L MY     L  A ++F +M  KD ++W  M+ 
Sbjct: 237 AVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMIC 296

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            +        ++K+F +M     + D +++ + I      GDL+ GK +H  ++  G + 
Sbjct: 297 GYAQLGRHEASVKLFMDMIDG-FVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFEC 355

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           +    N +I MY+KCGDL +++ VF+    K  V+W ++I+GY Q+G  +E L  F  M+
Sbjct: 356 DTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMK 415

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
            E+    DS+T V +L+   +LA +     +H    + GF     + N L+  Y+KCG +
Sbjct: 416 MERKP--DSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEM 473

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           D    VF  M    D++SWNT+I              + ++M   G +PD +T L IL  
Sbjct: 474 DDLLKVFSYMS-AHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPM 532

Query: 465 CGHAGLTNDG 474
           C    +   G
Sbjct: 533 CSLLAVRRQG 542



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 115/430 (26%), Positives = 204/430 (47%), Gaps = 31/430 (7%)

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE-SDLFEG--------LKNP------- 113
             F    +L   +  +N    R++H L++  GL  S +F G        +K+P       
Sbjct: 18  QEFLRSSLLKTLSSAKNTPQLRTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVF 77

Query: 114 ---------YLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
                    YL   N+I+    +N LF QA+  +   R   L P+A T  +VI  C  + 
Sbjct: 78  RSISPTNNVYL--WNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARIL 135

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
              L  ++H   +++G   D+ + N+++DMYS  +DLD A  +F EM  +D +SW  ++ 
Sbjct: 136 DLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLIS 195

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            +    +  DAL ++ + R + ++ D   + +++     L  +K G  +H  +   G+  
Sbjct: 196 GYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAG 255

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           ++ + N +++MY K   L  +R VF+++  K  V+W  +I GY Q G    ++  F+ M 
Sbjct: 256 DVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMI 315

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
                 + SIT  S + A G+   L++   +H     +GF       N LI  Y+KCG++
Sbjct: 316 DGFVPDMLSIT--STIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDL 373

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
             A  VF+     +D V+WN++I GY  +G+ +  L  + KM +    PDS T++ +L+ 
Sbjct: 374 LAAQEVFDTTK-CKDSVTWNSLINGYTQSGYYKEGLESF-KMMKMERKPDSVTFVLLLSI 431

Query: 465 CGHAGLTNDG 474
                  N G
Sbjct: 432 FSQLADINQG 441


>gi|168066429|ref|XP_001785140.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162663262|gb|EDQ50036.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 922

 Score =  279 bits (714), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 161/551 (29%), Positives = 280/551 (50%), Gaps = 26/551 (4%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ L++ Y K G ++ A  +F+E+ E+NVVSW+ +I GY  +G  +++   F  ++ SG 
Sbjct: 190 STALINMYCKCGSLELARKVFNEMRERNVVSWTAMISGYVQHGDSKEAFVLFQKLIRSGT 249

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL--------------------- 106
            PN  +   +L A     +LE    +H  + + GLE ++                     
Sbjct: 250 QPNKVSFASILGACTNPNDLEQGLKLHAYIKQAGLEQEVLVGNALISMYARCGSLANARQ 309

Query: 107 -FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
            F+ L++P  VS NA++AG+      ++A  LF   +  G  P+  T  +++  C     
Sbjct: 310 VFDNLRSPNRVSWNAMIAGY-GEGFMEEAFRLFRDMQQKGFQPDRFTYASLLAICADRAD 368

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
               + +H   ++     DV+V  +++ MY+    L+ A ++F +M  K+ +SW   +  
Sbjct: 369 LNRGKELHSQIVRTAWEADVTVATALISMYAKCGSLEEARKVFNQMPEKNAVSWNAFIAC 428

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
                   +A ++F++MR+  +I D V  + L++      D +RG+ +H ++   G+ S 
Sbjct: 429 CCRHGSEKEAFQVFKQMRRDDVIPDHVTFITLLNSCTSPEDFERGRYIHGKIDQWGMLSN 488

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
             ++N++I+MY +CG L  +R VF +I  + L SW A+I+ YVQ+G    A + FIK + 
Sbjct: 489 NLVANALISMYGRCGKLADAREVFYRIRRRDLGSWNAMIAAYVQHGANGSAFDLFIKYKS 548

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
           E     D  T +++L A   L  L+   ++HG+  +AG  +   +   LI  YSKCG++ 
Sbjct: 549 EGGKG-DKYTFINVLRAIANLEDLDAGRKIHGLVEKAGLEKDIRILTTLIKMYSKCGSLR 607

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            AY VF+ +   +DVV WN ++  Y  + HG+ AL L+ +M   G  PDS+TY S+LNAC
Sbjct: 608 DAYSVFKNVQ-EKDVVCWNAMLAAYNHSDHGQDALKLFQQMRLEGVNPDSATYTSVLNAC 666

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI 525
              G    G   F+  ++E  ++    HY C+V  L RA  L +A     ++       +
Sbjct: 667 ARLGAIEHGKK-FHTQLKEAAMETDTRHYACMVAALGRASLLKEAEEFIEEISSESDALM 725

Query: 526 WRALLSGCVLH 536
           W +LL  C +H
Sbjct: 726 WESLLVACRIH 736



 Score =  234 bits (598), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 156/562 (27%), Positives = 279/562 (49%), Gaps = 28/562 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y ++ L+S Y K G I++A N+F  + +K+VVSW+ +I GY+++G  ++++  F  M 
Sbjct: 85  DIYLNNMLISMYSKCGSIEDANNVFQSMEDKDVVSWNAMISGYALHGRGQEAVDLFYQMQ 144

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
             GL PN  + + +L A      LE    IH  + K G ESD                  
Sbjct: 145 REGLKPNQNSFISILSACQTPIVLEFGEQIHSHITKAGYESDVNVSTALINMYCKCGSLE 204

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +F  ++   +VS  A+++G++ +   ++A +LF     SG  PN V+  +++  C 
Sbjct: 205 LARKVFNEMRERNVVSWTAMISGYVQHGDSKEAFVLFQKLIRSGTQPNKVSFASILGACT 264

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
                     +H    + GL  +V V N+++ MY+    L  A Q+F  +   + +SW  
Sbjct: 265 NPNDLEQGLKLHAYIKQAGLEQEVLVGNALISMYARCGSLANARQVFDNLRSPNRVSWNA 324

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+  + +  +  +A ++FR+M++     D     +L+++ A   DL RGK+LH+Q+V   
Sbjct: 325 MIAGYGE-GFMEEAFRLFRDMQQKGFQPDRFTYASLLAICADRADLNRGKELHSQIVRTA 383

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
            ++++ ++ ++I+MY+KCG L+ +R VFNQ+ EK+ VSW A I+   ++G  +EA   F 
Sbjct: 384 WEADVTVATALISMYAKCGSLEEARKVFNQMPEKNAVSWNAFIACCCRHGSEKEAFQVFK 443

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +MR++     D +T +++L +       E    +HG   + G      V N LIS Y +C
Sbjct: 444 QMRRDDVIP-DHVTFITLLNSCTSPEDFERGRYIHGKIDQWGMLSNNLVANALISMYGRC 502

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G +  A  VF  +   RD+ SWN +I  Y  +G   +A  L+ K    G   D  T++++
Sbjct: 503 GKLADAREVFYRIR-RRDLGSWNAMIAAYVQHGANGSAFDLFIKYKSEGGKGDKYTFINV 561

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L A  +    + G  I   ++E+  ++        ++ + ++ G L DA  +   + E  
Sbjct: 562 LRAIANLEDLDAGRKIHG-LVEKAGLEKDIRILTTLIKMYSKCGSLRDAYSVFKNVQE-K 619

Query: 522 GPNIWRALLSGCVLHVGRFQDA 543
               W A+L+    H    QDA
Sbjct: 620 DVVCWNAMLAA-YNHSDHGQDA 640



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 129/424 (30%), Positives = 219/424 (51%), Gaps = 20/424 (4%)

Query: 157 IRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
           ++ CV   S A  + +H          D+ +NN ++ MYS    ++ A  +F+ ME KDV
Sbjct: 58  LQECVQAKSLAEGKKVHDHMRSAQFEPDIYLNNMLISMYSKCGSIEDANNVFQSMEDKDV 117

Query: 217 ISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQ 276
           +SW  M+  +       +A+ +F +M++  +  +  + ++++S       L+ G+Q+H+ 
Sbjct: 118 VSWNAMISGYALHGRGQEAVDLFYQMQREGLKPNQNSFISILSACQTPIVLEFGEQIHSH 177

Query: 277 VVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
           +   G +S++ +S ++I MY KCG L+ +R VFN++ E+++VSWTA+ISGYVQ+G ++EA
Sbjct: 178 ITKAGYESDVNVSTALINMYCKCGSLELARKVFNEMRERNVVSWTAMISGYVQHGDSKEA 237

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
              F K+ +  T   + ++  SIL A      LE  L+LH    +AG  +   V N LIS
Sbjct: 238 FVLFQKLIRSGTQP-NKVSFASILGACTNPNDLEQGLKLHAYIKQAGLEQEVLVGNALIS 296

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
            Y++CG++  A  VF+ +    + VSWN +I GYG  G  E A  L+  M + G  PD  
Sbjct: 297 MYARCGSLANARQVFDNLR-SPNRVSWNAMIAGYG-EGFMEEAFRLFRDMQQKGFQPDRF 354

Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIE---ENKVKPSQEHYGCVVDLLARAGCLSDASGL 513
           TY S+L  C      N G  + +Q++    E  V  +      ++ + A+ G L +A  +
Sbjct: 355 TYASLLAICADRADLNRGKELHSQIVRTAWEADVTVAT----ALISMYAKCGSLEEARKV 410

Query: 514 AGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPG----ISFLNS--T 567
             ++ E    + W A ++ C  H     + EA +   Q +    IP     I+ LNS  +
Sbjct: 411 FNQMPEKNAVS-WNAFIACCCRHGS---EKEAFQVFKQMRRDDVIPDHVTFITLLNSCTS 466

Query: 568 SRDF 571
             DF
Sbjct: 467 PEDF 470



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 129/504 (25%), Positives = 224/504 (44%), Gaps = 30/504 (5%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+S Y + G +  A  +FD +   N VSW+ +I GY   GF E++ + F  M   G  P+
Sbjct: 294 LISMYARCGSLANARQVFDNLRSPNRVSWNAMIAGYG-EGFMEEAFRLFRDMQQKGFQPD 352

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------------FE 108
            FT   +L   A   +L   + +H  +V+   E+D+                      F 
Sbjct: 353 RFTYASLLAICADRADLNRGKELHSQIVRTAWEADVTVATALISMYAKCGSLEEARKVFN 412

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            +     VS NA +A    +   ++A  +F   R   ++P+ VT +T++  C +      
Sbjct: 413 QMPEKNAVSWNAFIACCCRHGSEKEAFQVFKQMRRDDVIPDHVTFITLLNSCTSPEDFER 472

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
              IHG   + G++ +  V N+++ MY     L  A ++F  +  +D+ SW  M+  +V 
Sbjct: 473 GRYIHGKIDQWGMLSNNLVANALISMYGRCGKLADAREVFYRIRRRDLGSWNAMIAAYVQ 532

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
               G A  +F + +      D    +N++   A L DL  G+++H  V   GL+ ++R+
Sbjct: 533 HGANGSAFDLFIKYKSEGGKGDKYTFINVLRAIANLEDLDAGRKIHGLVEKAGLEKDIRI 592

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
             ++I MYSKCG L  + SVF  + EK +V W A+++ Y  +   ++AL  F +MR E  
Sbjct: 593 LTTLIKMYSKCGSLRDAYSVFKNVQEKDVVCWNAMLAAYNHSDHGQDALKLFQQMRLEGV 652

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
           +  DS T  S+L A   L A+E   + H    EA          C++++  +   +  A 
Sbjct: 653 NP-DSATYTSVLNACARLGAIEHGKKFHTQLKEAAMETDTRHYACMVAALGRASLLKEAE 711

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVN---GHGETALALYHKMTETGEVPDSSTYLSILNAC 465
              EE+    D + W +++    ++   G  ETA+     + +       +    ++N  
Sbjct: 712 EFIEEISSESDALMWESLLVACRIHHNVGLAETAV---EHLLDVKAQSSPAVCEQLMNIY 768

Query: 466 GHAGLTNDGLVIFNQMIEENKVKP 489
             AG   D  VI   M E   + P
Sbjct: 769 AAAGRWEDVSVIKATMREAGLLAP 792


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  279 bits (713), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 172/591 (29%), Positives = 304/591 (51%), Gaps = 57/591 (9%)

Query: 31  IPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELA 90
           +P++N VS+  +I GY  +   ++ +  FS +   G   N F    +L     ++  ELA
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELA 60

Query: 91  RSIHGLMVKFGLESDLFEG--LKNPY--------------------LVSCNAIVAGFINN 128
            S+H  + K G ES+ F G  L + Y                    +VS   +VA +  N
Sbjct: 61  YSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAEN 120

Query: 129 KLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVN 188
             FQ ++ LF   R  G  PN  T   V++ C+ L + ++ + +HG  +K    +D+ V 
Sbjct: 121 DRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVG 180

Query: 189 NSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRII 248
             +LD+Y+   D +  +++F EM   DVI W+ M+  +     + +A+++F +MR++ ++
Sbjct: 181 VGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVL 240

Query: 249 CDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSV 308
            +     +++   A + +L+ GKQ+H  V+  GL   + +SN+++ +Y+KCG LD+S  +
Sbjct: 241 PNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKL 300

Query: 309 FNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAA 368
           F ++  ++ V+W  +I GYVQ+G   +AL+ +  M + +  + + +T  S+L A   LAA
Sbjct: 301 FMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASE-VTYSSVLRACASLAA 359

Query: 369 LEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIY 428
           +E+  Q+H ++ +  + +   V N LI  Y+KCG++  A +VF+ +   RD +SWN +I 
Sbjct: 360 MELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLS-ERDEISWNAMIS 418

Query: 429 GYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVK 488
           GY ++G    AL  +  M ET  VP+  T++SIL+AC +AGL + G   F  M+++  ++
Sbjct: 419 GYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIE 478

Query: 489 PSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH------------ 536
           P  EHY C+V LL R+G L  A  L  ++       +WRALL  CV+H            
Sbjct: 479 PCMEHYTCMVWLLGRSGHLDKAVKLIEEIPLEPNVKVWRALLGACVIHNDVDLGIMSAQQ 538

Query: 537 ---------------------VGRFQDAEALRSGSQKKGIIKIPGISFLNS 566
                                  R+    ++R   + KG+ K PG+S++ +
Sbjct: 539 ILQIDPQDEATHVLLSNIYARTRRWNSVASVRKFMKNKGVKKEPGLSWIEN 589



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 119/448 (26%), Positives = 228/448 (50%), Gaps = 36/448 (8%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + L+  Y   G +  A   FD I  K++VSW+ ++  Y+ N   + S++ F+ M + G  
Sbjct: 80  TALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDRFQDSLQLFAEMRMVGFN 139

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------------- 106
           PN FT  GVL A  GL+   + +S+HG ++K   E DL                      
Sbjct: 140 PNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLRV 199

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           FE +    ++  + +++ +  +   ++AV LF   R + ++PN  T  +V++ C ++ + 
Sbjct: 200 FEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENL 259

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
            L + +H   +K+GL  +V V+N+++D+Y+    LD ++++F E+  ++ ++W  M+  +
Sbjct: 260 QLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVGY 319

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
           V       AL +++ M + ++    V   +++   A L  ++ G Q+H+  +      ++
Sbjct: 320 VQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKDV 379

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            + N++I MY+KCG + ++R VF+ ++E+  +SW A+ISGY  +G   EAL  F +M QE
Sbjct: 380 VVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGLVGEALKAF-QMMQE 438

Query: 347 KTDSVDSITLVSILTASGELAALEI-------CLQLHGIAFEAGFPRYRSVQNCLISSYS 399
                + +T VSIL+A      L+I        +Q +GI  E     Y     C++    
Sbjct: 439 TECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGI--EPCMEHY----TCMVWLLG 492

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTII 427
           + G++D A  + EE+    +V  W  ++
Sbjct: 493 RSGHLDKAVKLIEEIPLEPNVKVWRALL 520



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/350 (24%), Positives = 169/350 (48%), Gaps = 24/350 (6%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D Y    LL  Y K G   +   +F+E+P+ +V+ WS +I  Y+ +    ++++ F  M
Sbjct: 175 MDLYVGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQM 234

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
             + +LPN FT   VL + A ++NL+L + +H  ++K GL+ +                 
Sbjct: 235 RRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRL 294

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                LF  L N   V+ N ++ G++ +    +A+ L+       +  + VT  +V+R C
Sbjct: 295 DNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRAC 354

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
            +L +  L   IH L++K     DV V N+++DMY+    +  A  +F  +  +D ISW 
Sbjct: 355 ASLAAMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWN 414

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+  +      G+ALK F+ M+++  + + +  ++++S  +  G L  G+     +V  
Sbjct: 415 AMISGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQD 474

Query: 281 -GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISGYV 328
            G++  +     ++ +  + G LD +  +  +I  E ++  W A++   V
Sbjct: 475 YGIEPCMEHYTCMVWLLGRSGHLDKAVKLIEEIPLEPNVKVWRALLGACV 524


>gi|302773996|ref|XP_002970415.1| hypothetical protein SELMODRAFT_93286 [Selaginella moellendorffii]
 gi|300161931|gb|EFJ28545.1| hypothetical protein SELMODRAFT_93286 [Selaginella moellendorffii]
          Length = 581

 Score =  279 bits (713), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 182/554 (32%), Positives = 278/554 (50%), Gaps = 38/554 (6%)

Query: 15  YFKSGKIKEAENLFDEIP-EKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFT 73
           Y K   + EA  +FD +   KNV SWSI+I  Y+ NG   ++++ F  M L G+ PNSFT
Sbjct: 2   YGKCRSVVEARQVFDALGWRKNVFSWSIIISAYAQNGHFREALQLFQAMDLEGMQPNSFT 61

Query: 74  MVGVLVAAAGLQNLELARSIHGLMVKFGLESD-----------------------LFEGL 110
           +  V+ A +GL++   AR+IH  +V  G  SD                       +F+G+
Sbjct: 62  LSSVVAACSGLEDPLQARAIHSRIVGAGFGSDEFVATAMVAMFSRCDGCWIDAKAVFDGM 121

Query: 111 KNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCE 170
            +  +VS NA+++G I      QA+ L       G  P+  T+ T++  C ++     C 
Sbjct: 122 ASRSIVSWNAVISGAIRGGEKDQALQLLWRMDNEGTKPDQFTLTTILSACSSVRE---CR 178

Query: 171 LIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFE 230
             H      G    ++V N+++D Y     L  A  +F EM  +DVISWT ++  +V  +
Sbjct: 179 EFHARIQASGFQAMLAVQNALMDCYGKCGSLRDAKMVFDEMVERDVISWTCLIASYVHND 238

Query: 231 YAGDALKIFREMRKS--RIICDTVALLNLISVNAILG----DLKRGKQLHAQVVLGGLQS 284
            + +A+ I+  M +S  R +       + ++  A LG     + RGK LH+     GL  
Sbjct: 239 ESREAIAIYELMEESARRSLSSLQPNADGVTFAAALGVCTNHVDRGKSLHSFARDAGLDR 298

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           E  +  ++IAMYS+ G LD + + F +I EKS+V+W+++++GY Q G    AL  + +M 
Sbjct: 299 ENAVGAALIAMYSRSGRLDEAWTAFEKIREKSVVAWSSLMTGYAQQGKNWRALQLYEEMI 358

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEA-GFPRYRSVQNCLISSYSKCGN 403
            E     D  T  +IL    EL A E   ++H       GF R   +   LI  ++KCGN
Sbjct: 359 LESEVLPDKFTFSTILGVCAELGAAEEGRRVHSQMLACLGFERDAVLGTSLIDMFAKCGN 418

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           +D A +VF+ M   R+V +W T++ G   +G GE A+    +M+  G   D +T  +IL+
Sbjct: 419 IDAAKLVFDGM-LERNVQTWTTLVAGLARHGRGEQAVWWLRRMSMEGFCADQATVTTILH 477

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
            C H GL + G   F     E  ++ S EHY CVVDLL RAG L DA  LA   ++   P
Sbjct: 478 GCNHGGLIDAGRCCFRLAGGEYGIQASCEHYDCVVDLLGRAGRLKDAESLAAA-MDDQAP 536

Query: 524 NIWRALLSGCVLHV 537
             WR LL  C +H 
Sbjct: 537 --WRILLGACRIHA 548



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 84/176 (47%), Gaps = 24/176 (13%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML-SGL 67
           + L++ Y +SG++ EA   F++I EK+VV+WS ++ GY+  G + ++++ +  M+L S +
Sbjct: 304 AALIAMYSRSGRLDEAWTAFEKIREKSVVAWSSLMTGYAQQGKNWRALQLYEEMILESEV 363

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVK-FGLESD--------------------- 105
           LP+ FT   +L   A L   E  R +H  M+   G E D                     
Sbjct: 364 LPDKFTFSTILGVCAELGAAEEGRRVHSQMLACLGFERDAVLGTSLIDMFAKCGNIDAAK 423

Query: 106 -LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
            +F+G+    + +   +VAG   +   +QAV         G   +  T+ T++ GC
Sbjct: 424 LVFDGMLERNVQTWTTLVAGLARHGRGEQAVWWLRRMSMEGFCADQATVTTILHGC 479



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 62/281 (22%), Positives = 123/281 (43%), Gaps = 36/281 (12%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM------ML 64
           L+  Y K G +++A+ +FDE+ E++V+SW+ +I  Y  N    +++  +  M       L
Sbjct: 199 LMDCYGKCGSLRDAKMVFDEMVERDVISWTCLIASYVHNDESREAIAIYELMEESARRSL 258

Query: 65  SGLLPNSFTMVGVLVAAA---GLQNLELARSIHGLMVKFGLESD---------------- 105
           S L PN+    GV  AAA      +++  +S+H      GL+ +                
Sbjct: 259 SSLQPNA---DGVTFAAALGVCTNHVDRGKSLHSFARDAGLDRENAVGAALIAMYSRSGR 315

Query: 106 ------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLF-NFFRGSGLVPNAVTMLTVIR 158
                  FE ++   +V+ ++++ G+       +A+ L+      S ++P+  T  T++ 
Sbjct: 316 LDEAWTAFEKIREKSVVAWSSLMTGYAQQGKNWRALQLYEEMILESEVLPDKFTFSTILG 375

Query: 159 GCVALGSRALCELIHGLTIK-LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
            C  LG+      +H   +  LG   D  +  S++DM++   ++DAA  +F  M  ++V 
Sbjct: 376 VCAELGAAEEGRRVHSQMLACLGFERDAVLGTSLIDMFAKCGNIDAAKLVFDGMLERNVQ 435

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLI 258
           +WT ++           A+   R M       D   +  ++
Sbjct: 436 TWTTLVAGLARHGRGEQAVWWLRRMSMEGFCADQATVTTIL 476


>gi|242076488|ref|XP_002448180.1| hypothetical protein SORBIDRAFT_06g022530 [Sorghum bicolor]
 gi|241939363|gb|EES12508.1| hypothetical protein SORBIDRAFT_06g022530 [Sorghum bicolor]
          Length = 1029

 Score =  278 bits (712), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 170/621 (27%), Positives = 314/621 (50%), Gaps = 72/621 (11%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           S L++ Y K G I +A+ +FD   EKN+V W+ +++G+  N   E++++ F +M  + L 
Sbjct: 366 SSLINLYVKHGCISDAKKVFDFSTEKNIVMWNAMLYGFVQNDLQEETIQMFQYMRRADLE 425

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYL------------- 115
            + FT V VL A   L +L++ R +H + +K  +++DLF  + N  L             
Sbjct: 426 ADDFTFVSVLGACINLDSLDIGRQVHCITIKNSMDADLF--VANAMLDMYSKLGAIDVAK 483

Query: 116 -----------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
                      VS NA++ G  +N+  ++AV +    +  G+ P+ V+  T I  C  + 
Sbjct: 484 ALFSLIPGKDSVSWNALIVGLAHNEEEEEAVYMLKRMKCYGIAPDEVSFATAINACSNIR 543

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
           +    + IH  +IK  +  + +V +S++D+YS   D++++ ++   ++   ++    ++ 
Sbjct: 544 ATETGKQIHCASIKYNVCSNHAVGSSLIDLYSKFGDVESSRKVLAHVDASSMVPINALIT 603

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLIS-----VNAILGDLKRGKQLHAQVVL 279
             V      +A+++F+++ K           +++S     V++++G     KQ+H+  + 
Sbjct: 604 GLVQNNREDEAIELFQQVLKDGFKPSNFTFASILSGCTGPVSSVIG-----KQVHSYTLK 658

Query: 280 GGL-QSELRLSNSIIAMYSKCGDLDSSRSVFNQITE-KSLVSWTAIISGYVQNGCAREAL 337
             L   +  L  S++ +Y KC  L+ +  +  ++ + K+LV WTA ISGY QNG + ++L
Sbjct: 659 SALLNQDTSLGISLVGIYLKCKLLEDANKLLAEVPDHKNLVEWTATISGYAQNGYSDQSL 718

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
             F +MR     S D  T  S+L A  E+AAL    ++HG+  ++GF  Y +  + L+  
Sbjct: 719 VMFWRMRSHDVRS-DEATFASVLKACSEIAALTDGKEIHGLIIKSGFVSYETAASALMDM 777

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           YSKCG+V  ++ +F+E+   ++++ WN++I G+  NG+   AL L+ KM E+   PD  T
Sbjct: 778 YSKCGDVISSFEIFKELKNKQNIMPWNSMIVGFAKNGYANEALLLFQKMQESQLKPDEVT 837

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL 517
            L +L AC HAGL ++G  +F+ M +   + P  +HY C++DLL R G L +A  +  +L
Sbjct: 838 LLGVLIACSHAGLISEGRNLFDSMSQVYGIVPRVDHYACLIDLLGRGGHLQEAQEVIDQL 897

Query: 518 LEGMGPNIWRALLSGCVLH---------------------------------VGRFQDAE 544
                  IW   L+ C +H                                  G + +A+
Sbjct: 898 PFRADGVIWATFLAACQMHKDEERGKVAAKKLVEMEPQRSSTYVFLSSLHAAAGNWVEAK 957

Query: 545 ALRSGSQKKGIIKIPGISFLN 565
             R   ++KG++K PG S++ 
Sbjct: 958 VAREAMREKGVMKFPGCSWIT 978



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 113/467 (24%), Positives = 228/467 (48%), Gaps = 21/467 (4%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C   +  + L+  Y K  ++K+A  +FD I   + + W+ +I GY   G +++++  FS 
Sbjct: 192 CSSAFCQAGLVDMYAKCVEVKDARRVFDGIACPDTICWASMIAGYHRVGRYQQALALFSR 251

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAI 121
           M   G  P+  T V ++   A +  L  AR+             L + ++ P  V+ NA+
Sbjct: 252 MEKMGSAPDQVTYVTIISTLASMGRLSDART-------------LLKRIQMPSTVAWNAV 298

Query: 122 VAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGL 181
           ++ +  + L  +   L+   +  GL+P   T  +++    ++ +    + IH   +K GL
Sbjct: 299 ISSYSQSGLESEVFGLYKDMKRQGLMPTRSTFASMLSAAASMTAFDEGQQIHAAAVKHGL 358

Query: 182 ILDVSVNNSVLDMY---SCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKI 238
             +V V +S++++Y    C+ D   A ++F     K+++ W  M+  FV  +   + +++
Sbjct: 359 DANVFVGSSLINLYVKHGCISD---AKKVFDFSTEKNIVMWNAMLYGFVQNDLQEETIQM 415

Query: 239 FREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSK 298
           F+ MR++ +  D    ++++     L  L  G+Q+H   +   + ++L ++N+++ MYSK
Sbjct: 416 FQYMRRADLEADDFTFVSVLGACINLDSLDIGRQVHCITIKNSMDADLFVANAMLDMYSK 475

Query: 299 CGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVS 358
            G +D ++++F+ I  K  VSW A+I G   N    EA+    +M+     + D ++  +
Sbjct: 476 LGAIDVAKALFSLIPGKDSVSWNALIVGLAHNEEEEEAVYMLKRMKCYGI-APDEVSFAT 534

Query: 359 ILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLR 418
            + A   + A E   Q+H  + +       +V + LI  YSK G+V+ +  V   +    
Sbjct: 535 AINACSNIRATETGKQIHCASIKYNVCSNHAVGSSLIDLYSKFGDVESSRKVLAHVD-AS 593

Query: 419 DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            +V  N +I G   N   + A+ L+ ++ + G  P + T+ SIL+ C
Sbjct: 594 SMVPINALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFASILSGC 640



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 130/517 (25%), Positives = 234/517 (45%), Gaps = 40/517 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + ++ +L  Y K G I  A+ LF  IP K+ VSW+ +I G + N   E+++     M 
Sbjct: 462 DLFVANAMLDMYSKLGAIDVAKALFSLIPGKDSVSWNALIVGLAHNEEEEEAVYMLKRMK 521

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES---------DLFEGLKN-- 112
             G+ P+  +    + A + ++  E  + IH   +K+ + S         DL+    +  
Sbjct: 522 CYGIAPDEVSFATAINACSNIRATETGKQIHCASIKYNVCSNHAVGSSLIDLYSKFGDVE 581

Query: 113 -----------PYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                        +V  NA++ G + N    +A+ LF      G  P+  T  +++ GC 
Sbjct: 582 SSRKVLAHVDASSMVPINALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFASILSGCT 641

Query: 162 ALGSRALCELIHGLTIKLGLI-LDVSVNNSVLDMY-SCLMDLDAAIQIFREMECKDVISW 219
              S  + + +H  T+K  L+  D S+  S++ +Y  C +  DA   +    + K+++ W
Sbjct: 642 GPVSSVIGKQVHSYTLKSALLNQDTSLGISLVGIYLKCKLLEDANKLLAEVPDHKNLVEW 701

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           T  +  +    Y+  +L +F  MR   +  D     +++   + +  L  GK++H  ++ 
Sbjct: 702 TATISGYAQNGYSDQSLVMFWRMRSHDVRSDEATFASVLKACSEIAALTDGKEIHGLIIK 761

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK-SLVSWTAIISGYVQNGCAREALN 338
            G  S    +++++ MYSKCGD+ SS  +F ++  K +++ W ++I G+ +NG A EAL 
Sbjct: 762 SGFVSYETAASALMDMYSKCGDVISSFEIFKELKNKQNIMPWNSMIVGFAKNGYANEALL 821

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAAL-------EICLQLHGIAFEAGFPRYRSVQ 391
            F KM QE     D +TL+ +L A      +       +   Q++GI      PR     
Sbjct: 822 LFQKM-QESQLKPDEVTLLGVLIACSHAGLISEGRNLFDSMSQVYGIV-----PRVDHYA 875

Query: 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE 451
            CLI    + G++  A  V +++ F  D V W T +    ++   E       K+ E  E
Sbjct: 876 -CLIDLLGRGGHLQEAQEVIDQLPFRADGVIWATFLAACQMHKDEERGKVAAKKLVEM-E 933

Query: 452 VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVK 488
              SSTY+ + +    AG   +  V    M E+  +K
Sbjct: 934 PQRSSTYVFLSSLHAAAGNWVEAKVAREAMREKGVMK 970



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 97/399 (24%), Positives = 165/399 (41%), Gaps = 46/399 (11%)

Query: 138 FNFFRGS-GLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYS 196
           F   R S G  P+   +  V+  C  LG+      +H   +K G          ++DMY+
Sbjct: 147 FQRLRCSIGGTPDQFGLAVVLSACSRLGALEQGRQVHCDVLKSGFCSSAFCQAGLVDMYA 206

Query: 197 CLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLN 256
             +++  A ++F  + C D I W  M+  +        AL +F  M K     D V  + 
Sbjct: 207 KCVEVKDARRVFDGIACPDTICWASMIAGYHRVGRYQQALALFSRMEKMGSAPDQVTYVT 266

Query: 257 LISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKS 316
           +IS  A +G                     RLS+              +R++  +I   S
Sbjct: 267 IISTLASMG---------------------RLSD--------------ARTLLKRIQMPS 291

Query: 317 LVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLH 376
            V+W A+IS Y Q+G   E    +  M+++      S T  S+L+A+  + A +   Q+H
Sbjct: 292 TVAWNAVISSYSQSGLESEVFGLYKDMKRQGLMPTRS-TFASMLSAAASMTAFDEGQQIH 350

Query: 377 GIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHG 436
             A + G      V + LI+ Y K G +  A  VF +    +++V WN ++YG+  N   
Sbjct: 351 AAAVKHGLDANVFVGSSLINLYVKHGCISDAKKVF-DFSTEKNIVMWNAMLYGFVQNDLQ 409

Query: 437 ETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQ---MIEENKVKPSQEH 493
           E  + ++  M       D  T++S+L AC    +  D L I  Q   +  +N +      
Sbjct: 410 EETIQMFQYMRRADLEADDFTFVSVLGAC----INLDSLDIGRQVHCITIKNSMDADLFV 465

Query: 494 YGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSG 532
              ++D+ ++ G +  A  L   L+ G     W AL+ G
Sbjct: 466 ANAMLDMYSKLGAIDVAKALFS-LIPGKDSVSWNALIVG 503



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 136/288 (47%), Gaps = 12/288 (4%)

Query: 273 LHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTA--IISGYVQN 330
           LHA+V+  GL    RL ++++ +Y + G +  +       T        A  ++S + ++
Sbjct: 78  LHARVLRLGLPLRGRLGDALVDLYGRSGRVGYAWRALGCCTGAPASGAAASSVLSCHARS 137

Query: 331 GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV 390
           G  R+ L+ F ++R     + D   L  +L+A   L ALE   Q+H    ++GF      
Sbjct: 138 GSPRDVLDAFQRLRCSIGGTPDQFGLAVVLSACSRLGALEQGRQVHCDVLKSGFCSSAFC 197

Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
           Q  L+  Y+KC  V  A  VF+ +    D + W ++I GY   G  + ALAL+ +M + G
Sbjct: 198 QAGLVDMYAKCVEVKDARRVFDGIA-CPDTICWASMIAGYHRVGRYQQALALFSRMEKMG 256

Query: 451 EVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
             PD  TY++I++     G  +D   +  ++       PS   +  V+   +++G  S+ 
Sbjct: 257 SAPDQVTYVTIISTLASMGRLSDARTLLKRI-----QMPSTVAWNAVISSYSQSGLESEV 311

Query: 511 SGLAGKL-LEGMGP--NIWRALLSGCVLHVGRFQDAEALRSGSQKKGI 555
            GL   +  +G+ P  + + ++LS     +  F + + + + + K G+
Sbjct: 312 FGLYKDMKRQGLMPTRSTFASMLSAAA-SMTAFDEGQQIHAAAVKHGL 358



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 91/380 (23%), Positives = 157/380 (41%), Gaps = 64/380 (16%)

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
           C ++H   ++LGL L   + ++++D+Y     +  A   +R + C      +      V 
Sbjct: 75  CGVLHARVLRLGLPLRGRLGDALVDLYGRSGRVGYA---WRALGCCTGAPASGAAASSVL 131

Query: 229 FEYAG-----DALKIFREMRKS-RIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL 282
             +A      D L  F+ +R S     D   L  ++S  + LG L++G+Q+H  V+  G 
Sbjct: 132 SCHARSGSPRDVLDAFQRLRCSIGGTPDQFGLAVVLSACSRLGALEQGRQVHCDVLKSGF 191

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
            S       ++ MY+KC ++  +R VF+ I     + W ++I+GY + G  ++AL  F +
Sbjct: 192 CSSAFCQAGLVDMYAKCVEVKDARRVFDGIACPDTICWASMIAGYHRVGRYQQALALFSR 251

Query: 343 MRQ--EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
           M +     D V  +T++S L + G L+     L              + +Q         
Sbjct: 252 MEKMGSAPDQVTYVTIISTLASMGRLSDARTLL--------------KRIQ--------- 288

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
                           +   V+WN +I  Y  +G       LY  M   G +P  ST+ S
Sbjct: 289 ----------------MPSTVAWNAVISSYSQSGLESEVFGLYKDMKRQGLMPTRSTFAS 332

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY----GCVVDLLARAGCLSDASGLAGK 516
           +L+A       ++G     Q I    VK   +        +++L  + GC+SDA  +   
Sbjct: 333 MLSAAASMTAFDEG-----QQIHAAAVKHGLDANVFVGSSLINLYVKHGCISDAKKVFDF 387

Query: 517 LLEGMGPNI--WRALLSGCV 534
             E    NI  W A+L G V
Sbjct: 388 STE---KNIVMWNAMLYGFV 404


>gi|297836444|ref|XP_002886104.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331944|gb|EFH62363.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 723

 Score =  278 bits (712), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 173/548 (31%), Positives = 293/548 (53%), Gaps = 40/548 (7%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTM 74
           Y K G +      FD +  ++ VSW++++ G   +GF E+ +  FS + + G  PN  T+
Sbjct: 79  YMKCGDLCSGLRAFDCMNSRDSVSWNVIVFGLLDHGFEEEGLWWFSKLRVWGFEPNVSTL 138

Query: 75  VGVLVAAAGLQNLELARSIHGLMVKFGL---------------ESD------LFEGLKNP 113
           V V+ A   L        IHG +++ G                E D      LF+ +   
Sbjct: 139 VLVIHACRSLWFD--GEKIHGYVIRSGFWRISSVQNSILCLYSEFDSLSARKLFDEMSER 196

Query: 114 YLVSCNAIVAGFINNKLFQQAVLLFNFF----RGSGLVPNAVTMLTVIRGCVALGSRALC 169
            ++S + ++  ++ +   Q+ VL    F    R +   P+ VT+ +V++ C  L    + 
Sbjct: 197 DVISWSVVIRSYVQS---QEPVLGLELFKEMVREAKTEPDCVTVTSVLKACAVLDDIDVG 253

Query: 170 ELIHGLTIKLGL-ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
             +HG +I+ G  ++DV V NS++DMYS   D D+A ++F E  C++++SW  ++  FV 
Sbjct: 254 RSVHGFSIRRGFDLVDVFVRNSLIDMYSKGYDADSAFRVFDETTCRNIVSWNSILAGFVY 313

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
            +   +AL++FR M+K  +  D V L++L+ V          K +H  ++  G +S    
Sbjct: 314 NQRYDEALEMFRLMKKEALEADEVTLVSLLQVCKFFEHPLPCKSIHGVIIRRGYESNEVA 373

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
            +S++  Y+ C  +D +R+VF+ ++ K +VS + +ISG  + G + EA++ F +MR    
Sbjct: 374 LSSLMDAYTSCSLVDDARTVFDSMSYKDVVSCSTMISGLGRCGRSDEAISIFCQMR---- 429

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFP-RYRSVQNCLISSYSKCGNVDLA 407
           D  ++IT++S+L+A    A L      HGIA   G      SV   ++ +Y+KCG +D+A
Sbjct: 430 DKPNAITVISLLSACSVSAVLRTSKWAHGIAIRRGLAINDISVDTSIVDAYAKCGAIDIA 489

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
              F+++   + +VSW  II  Y +NG  + ALA + +M      P++ TYL+ L+AC H
Sbjct: 490 RRTFDQIT-EKSIVSWTVIISAYAINGLPDKALASFDEMKRDSYTPNAVTYLAALSACNH 548

Query: 468 AGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM--GPNI 525
            GL   GL+IF  M+EE++ KPS +HY C+VD+L+RAG +  A  L   L E +  G + 
Sbjct: 549 GGLVKKGLMIFRSMVEEDQ-KPSLQHYSCIVDMLSRAGEIDTAMELIKNLPEDVKAGASA 607

Query: 526 WRALLSGC 533
           W A+LSGC
Sbjct: 608 WGAILSGC 615



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 145/282 (51%), Gaps = 5/282 (1%)

Query: 185 VSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRK 244
           VSV NS+ D Y    DL + ++ F  M  +D +SW  ++   +D  +  + L  F ++R 
Sbjct: 69  VSVGNSIADFYMKCGDLCSGLRAFDCMNSRDSVSWNVIVFGLLDHGFEEEGLWWFSKLRV 128

Query: 245 SRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDS 304
                +   L  ++ ++A       G+++H  V+  G      + NSI+ +YS+   L S
Sbjct: 129 WGFEPNVSTL--VLVIHACRSLWFDGEKIHGYVIRSGFWRISSVQNSILCLYSEFDSL-S 185

Query: 305 SRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASG 364
           +R +F++++E+ ++SW+ +I  YVQ+      L  F +M +E     D +T+ S+L A  
Sbjct: 186 ARKLFDEMSERDVISWSVVIRSYVQSQEPVLGLELFKEMVREAKTEPDCVTVTSVLKACA 245

Query: 365 ELAALEICLQLHGIAFEAGFPRYRS-VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSW 423
            L  +++   +HG +   GF      V+N LI  YSK  + D A+ VF+E    R++VSW
Sbjct: 246 VLDDIDVGRSVHGFSIRRGFDLVDVFVRNSLIDMYSKGYDADSAFRVFDETT-CRNIVSW 304

Query: 424 NTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
           N+I+ G+  N   + AL ++  M +     D  T +S+L  C
Sbjct: 305 NSILAGFVYNQRYDEALEMFRLMKKEALEADEVTLVSLLQVC 346



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 166/350 (47%), Gaps = 29/350 (8%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  + L+  Y K      A  +FDE   +N+VSW+ ++ G+  N  ++++++ F  M
Sbjct: 268 VDVFVRNSLIDMYSKGYDADSAFRVFDETTCRNIVSWNSILAGFVYNQRYDEALEMFRLM 327

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
               L  +  T+V +L      ++    +SIHG++++ G ES+                 
Sbjct: 328 KKEALEADEVTLVSLLQVCKFFEHPLPCKSIHGVIIRRGYESNEVALSSLMDAYTSCSLV 387

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +F+ +    +VSC+ +++G        +A+ +F   R     PNA+T+++++  C
Sbjct: 388 DDARTVFDSMSYKDVVSCSTMISGLGRCGRSDEAISIFCQMRDK---PNAITVISLLSAC 444

Query: 161 VALGSRALCELIHGLTIKLGL-ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
                    +  HG+ I+ GL I D+SV+ S++D Y+    +D A + F ++  K ++SW
Sbjct: 445 SVSAVLRTSKWAHGIAIRRGLAINDISVDTSIVDAYAKCGAIDIARRTFDQITEKSIVSW 504

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           T ++  +        AL  F EM++     + V  L  +S     G +K+G  +   +V 
Sbjct: 505 TVIISAYAINGLPDKALASFDEMKRDSYTPNAVTYLAALSACNHGGLVKKGLMIFRSMVE 564

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK---SLVSWTAIISG 326
              +  L+  + I+ M S+ G++D++  +   + E       +W AI+SG
Sbjct: 565 EDQKPSLQHYSCIVDMLSRAGEIDTAMELIKNLPEDVKAGASAWGAILSG 614



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 96/196 (48%), Gaps = 18/196 (9%)

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           +L G +S + + NSI   Y KCGDL S    F+ +  +  VSW  I+ G + +G   E L
Sbjct: 61  LLQGFESYVSVGNSIADFYMKCGDLCSGLRAFDCMNSRDSVSWNVIVFGLLDHGFEEEGL 120

Query: 338 NQFIKMRQEKTDSVDSITLVSILTA------SGELAALEICLQLHGIAFEAGFPRYRSVQ 391
             F K+R    +   S TLV ++ A       GE        ++HG    +GF R  SVQ
Sbjct: 121 WWFSKLRVWGFEPNVS-TLVLVIHACRSLWFDGE--------KIHGYVIRSGFWRISSVQ 171

Query: 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE 451
           N ++  YS+  ++  A  +F+EM   RDV+SW+ +I  Y  +      L L+ +M    +
Sbjct: 172 NSILCLYSEFDSLS-ARKLFDEMS-ERDVISWSVVIRSYVQSQEPVLGLELFKEMVREAK 229

Query: 452 V-PDSSTYLSILNACG 466
             PD  T  S+L AC 
Sbjct: 230 TEPDCVTVTSVLKACA 245


>gi|326494876|dbj|BAJ94557.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 783

 Score =  278 bits (712), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 179/610 (29%), Positives = 297/610 (48%), Gaps = 57/610 (9%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + L++ Y K+G+I  A ++FD +P +N V+W+ VI GYS  G    +++ F  M L G+ 
Sbjct: 176 TALVNLYAKAGRIDAAMSVFDALPARNPVTWTAVITGYSQAGQAGVALELFGRMGLDGVR 235

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------L 106
           P+ F +     A +GL  +E  R IHG   +   ESD                      L
Sbjct: 236 PDRFVLASAASACSGLGFVEGGRQIHGYAYRTAAESDASVVNALIDLYCKCSRLLLARRL 295

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           F+ ++N  LVS   ++AG++ N L  +A+ +F     +G  P+     +++  C +L + 
Sbjct: 296 FDSMENRNLVSWTTMIAGYMQNSLDTEAMSMFWQLSQAGWQPDVFACTSILNSCGSLAAI 355

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
                +H   IK  L  D  V N+++DMY+    L  A  +F  +   D IS+  M+  +
Sbjct: 356 WQGRQVHAHVIKADLESDEYVKNALIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGY 415

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
                   A++IF +MR   +    +  ++L+ V++   DL+  KQ+H  +V  G   +L
Sbjct: 416 ARLGDLTGAVEIFGKMRYCSLKPSLLTFVSLLGVSSSRSDLELSKQIHGLIVKSGTSLDL 475

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
              +++I +YSK   +D ++ VF+ +  + +V W A+I G  QN    EA+  F ++R  
Sbjct: 476 YAGSALIDVYSKFSLVDDAKLVFSLMQNRDMVIWNAMIFGLAQNERGEEAVKLFARLRVS 535

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
              + +  T V+++T +  LA++    Q H    +AG      + N LI  Y+KCG ++ 
Sbjct: 536 GL-TPNEFTFVALVTVASTLASIFHGQQFHAQIIKAGADSDPHISNALIDMYAKCGFIEE 594

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
             ++FE     +DV+ WN++I  Y  +GH E AL ++  M   G  P+  T++S+L+AC 
Sbjct: 595 GRLLFEST-LGKDVICWNSMISTYAQHGHAEEALHVFGMMEGAGVEPNYVTFVSVLSACA 653

Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIW 526
           HAGL ++GL  FN M  +  V+P  EHY  VV+L  R+G L  A     ++       IW
Sbjct: 654 HAGLVDEGLHHFNSMKTKYAVEPGTEHYASVVNLFGRSGKLHAAKEFIERMPIEPVATIW 713

Query: 527 RALLSGCVL----HVGRF-----------------------------QDAEALRSGSQKK 553
           R+LLS C L     +GR+                              DA+ LR G    
Sbjct: 714 RSLLSACHLFGNVEIGRYATEMALLADPADSGPSVLMSNIYASKGLWADAQKLRQGMDCA 773

Query: 554 GIIKIPGISF 563
           G++K PG S+
Sbjct: 774 GVVKEPGYSW 783



 Score =  202 bits (513), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 150/568 (26%), Positives = 267/568 (47%), Gaps = 46/568 (8%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + ++ LL  Y K G++ +A  LFD +P +N+VSW   I  Y+ +G  + ++  F+   
Sbjct: 64  DLFLANLLLRGYSKLGRLGDARRLFDSMPSRNLVSWGSAISMYAQHGREDDALLLFAAFP 123

Query: 64  LSGLL------PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGL------- 110
            +G        PN F +   L A A  +       +HG+  K GL++++F G        
Sbjct: 124 SAGAASPDGEPPNEFLLASALRACAQSRAARFGEQVHGVAAKLGLDANVFVGTALVNLYA 183

Query: 111 -----------------KNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTM 153
                            +NP  V+  A++ G+        A+ LF      G+ P+   +
Sbjct: 184 KAGRIDAAMSVFDALPARNP--VTWTAVITGYSQAGQAGVALELFGRMGLDGVRPDRFVL 241

Query: 154 LTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC 213
            +    C  LG       IHG   +     D SV N+++D+Y     L  A ++F  ME 
Sbjct: 242 ASAASACSGLGFVEGGRQIHGYAYRTAAESDASVVNALIDLYCKCSRLLLARRLFDSMEN 301

Query: 214 KDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQL 273
           ++++SWT M+  ++      +A+ +F ++ ++    D  A  ++++    L  + +G+Q+
Sbjct: 302 RNLVSWTTMIAGYMQNSLDTEAMSMFWQLSQAGWQPDVFACTSILNSCGSLAAIWQGRQV 361

Query: 274 HAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA 333
           HA V+   L+S+  + N++I MY+KC  L  +R+VF  + E   +S+ A+I GY + G  
Sbjct: 362 HAHVIKADLESDEYVKNALIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGYARLGDL 421

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC 393
             A+  F KMR         +T VS+L  S   + LE+  Q+HG+  ++G        + 
Sbjct: 422 TGAVEIFGKMRYCSLKP-SLLTFVSLLGVSSSRSDLELSKQIHGLIVKSGTSLDLYAGSA 480

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           LI  YSK   VD A +VF  M   RD+V WN +I+G   N  GE A+ L+ ++  +G  P
Sbjct: 481 LIDVYSKFSLVDDAKLVFSLMQN-RDMVIWNAMIFGLAQNERGEEAVKLFARLRVSGLTP 539

Query: 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYG-CVVDLLARAGCLSDASG 512
           +  T+++++           G     Q+I+      S  H    ++D+ A+ G + +   
Sbjct: 540 NEFTFVALVTVASTLASIFHGQQFHAQIIKAG--ADSDPHISNALIDMYAKCGFIEE--- 594

Query: 513 LAGKLL--EGMGPNI--WRALLSGCVLH 536
             G+LL    +G ++  W +++S    H
Sbjct: 595 --GRLLFESTLGKDVICWNSMISTYAQH 620



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 116/412 (28%), Positives = 203/412 (49%), Gaps = 21/412 (5%)

Query: 57  KAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLV 116
            A +  ++SGLLP+ F           L NL L    +  + + G    LF+ + +  LV
Sbjct: 51  PAHARAVVSGLLPDLF-----------LANLLLRG--YSKLGRLGDARRLFDSMPSRNLV 97

Query: 117 SCNAIVAGFINNKLFQQAVLLFNFFRGSGLV------PNAVTMLTVIRGCVALGSRALCE 170
           S  + ++ +  +     A+LLF  F  +G        PN   + + +R C    +    E
Sbjct: 98  SWGSAISMYAQHGREDDALLLFAAFPSAGAASPDGEPPNEFLLASALRACAQSRAARFGE 157

Query: 171 LIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFE 230
            +HG+  KLGL  +V V  +++++Y+    +DAA+ +F  +  ++ ++WT ++  +    
Sbjct: 158 QVHGVAAKLGLDANVFVGTALVNLYAKAGRIDAAMSVFDALPARNPVTWTAVITGYSQAG 217

Query: 231 YAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSN 290
            AG AL++F  M    +  D   L +  S  + LG ++ G+Q+H        +S+  + N
Sbjct: 218 QAGVALELFGRMGLDGVRPDRFVLASAASACSGLGFVEGGRQIHGYAYRTAAESDASVVN 277

Query: 291 SIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDS 350
           ++I +Y KC  L  +R +F+ +  ++LVSWT +I+GY+QN    EA++ F ++ Q     
Sbjct: 278 ALIDLYCKCSRLLLARRLFDSMENRNLVSWTTMIAGYMQNSLDTEAMSMFWQLSQAGWQP 337

Query: 351 VDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIV 410
            D     SIL + G LAA+    Q+H    +A       V+N LI  Y+KC ++  A  V
Sbjct: 338 -DVFACTSILNSCGSLAAIWQGRQVHAHVIKADLESDEYVKNALIDMYAKCEHLTEARAV 396

Query: 411 FEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
           FE +    D +S+N +I GY   G    A+ ++ KM      P   T++S+L
Sbjct: 397 FEALA-EDDAISYNAMIEGYARLGDLTGAVEIFGKMRYCSLKPSLLTFVSLL 447



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 162/347 (46%), Gaps = 24/347 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + L+  Y K   + EA  +F+ + E + +S++ +I GY+  G    +++ F  M 
Sbjct: 373 DEYVKNALIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGYARLGDLTGAVEIFGKMR 432

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG-------------- 109
              L P+  T V +L  ++   +LEL++ IHGL+VK G   DL+ G              
Sbjct: 433 YCSLKPSLLTFVSLLGVSSSRSDLELSKQIHGLIVKSGTSLDLYAGSALIDVYSKFSLVD 492

Query: 110 --------LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                   ++N  +V  NA++ G   N+  ++AV LF   R SGL PN  T + ++    
Sbjct: 493 DAKLVFSLMQNRDMVIWNAMIFGLAQNERGEEAVKLFARLRVSGLTPNEFTFVALVTVAS 552

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            L S    +  H   IK G   D  ++N+++DMY+    ++    +F     KDVI W  
Sbjct: 553 TLASIFHGQQFHAQIIKAGADSDPHISNALIDMYAKCGFIEEGRLLFESTLGKDVICWNS 612

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG-KQLHAQVVLG 280
           M+  +    +A +AL +F  M  + +  + V  ++++S  A  G +  G    ++     
Sbjct: 613 MISTYAQHGHAEEALHVFGMMEGAGVEPNYVTFVSVLSACAHAGLVDEGLHHFNSMKTKY 672

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVS-WTAIISG 326
            ++       S++ ++ + G L +++    ++  + + + W +++S 
Sbjct: 673 AVEPGTEHYASVVNLFGRSGKLHAAKEFIERMPIEPVATIWRSLLSA 719



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 91/184 (49%), Gaps = 22/184 (11%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D Y  S L+  Y K   + +A+ +F  +  +++V W+ +I G + N   E+++K F+ +
Sbjct: 473 LDLYAGSALIDVYSKFSLVDDAKLVFSLMQNRDMVIWNAMIFGLAQNERGEEAVKLFARL 532

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
            +SGL PN FT V ++  A+ L ++   +  H  ++K G +SD                 
Sbjct: 533 RVSGLTPNEFTFVALVTVASTLASIFHGQQFHAQIIKAGADSDPHISNALIDMYAKCGFI 592

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                LFE      ++  N++++ +  +   ++A+ +F    G+G+ PN VT ++V+  C
Sbjct: 593 EEGRLLFESTLGKDVICWNSMISTYAQHGHAEEALHVFGMMEGAGVEPNYVTFVSVLSAC 652

Query: 161 VALG 164
              G
Sbjct: 653 AHAG 656


>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
 gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
          Length = 1084

 Score =  278 bits (711), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 170/558 (30%), Positives = 291/558 (52%), Gaps = 28/558 (5%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEK-NVVSWSIVIHGYSINGFHEKSMKAFSH 61
           ID    SKL+  Y K G +  A  +FD +P K NV  W++++ GY+     E+S+  F  
Sbjct: 341 IDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQ 400

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------- 105
           M   G+ P+   +  +L     L         HG +VK G  +                 
Sbjct: 401 MHELGITPDEHALSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAVCNALISFYAKSNM 460

Query: 106 ------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                 +F+ + +   +S N++++G  +N L  +A+ LF      G   ++ T+L+V+  
Sbjct: 461 IDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPA 520

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C       +  ++HG ++K GLI + S+ N++LDMYS   D  +  QIFR M  K+V+SW
Sbjct: 521 CARSHYWFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQIFRNMAQKNVVSW 580

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           T M+  +           + +EM    I  D  A+ +++   A    LK+GK +H   + 
Sbjct: 581 TAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVLHGFAGDESLKQGKSVHGYAIR 640

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G++  L ++N+++ MY  C +++ +R VF+ +T K ++SW  +I GY +N  A E+ + 
Sbjct: 641 NGMEKLLPVANALMEMYVNCRNMEEARLVFDHVTNKDIISWNTLIGGYSRNNFANESFSL 700

Query: 340 FIKM-RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
           F  M  Q K ++V   T+  IL A   +++LE   ++H  A   GF       N L+  Y
Sbjct: 701 FSDMLLQFKPNTV---TMTCILPAVASISSLERGREIHAYALRRGFLEDSYTSNALVDMY 757

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
            KCG + +A ++F+ +   ++++SW  +I GYG++G G+ A+AL+ +M  +G  PD++++
Sbjct: 758 VKCGALLVARVLFDRLT-KKNLISWTIMIAGYGMHGCGKDAVALFEQMRGSGVEPDTASF 816

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
            +IL AC H+GLT +G   FN M +E K++P  +HY C+VDLL+  G L +A      + 
Sbjct: 817 SAILYACCHSGLTAEGWKFFNAMRKEYKIEPKLKHYTCIVDLLSHTGNLKEAFEFIESMP 876

Query: 519 EGMGPNIWRALLSGCVLH 536
                +IW +LL GC +H
Sbjct: 877 IEPDSSIWVSLLHGCRIH 894



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 151/586 (25%), Positives = 272/586 (46%), Gaps = 50/586 (8%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ L++ Y + G +++A  +FD +  ++ +SW+  I GY  NG+H++++  FS M   G 
Sbjct: 236 ANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGT 295

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL-------ESDLFEGLKNPYL---VS 117
             +S T++ VL A A L    + + +HG  +K GL       +S + E L +  +   V 
Sbjct: 296 EISSVTVLSVLPACAELGFELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVK 355

Query: 118 C----------------------NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLT 155
           C                      N I+ G+     F++++LLF      G+ P+   +  
Sbjct: 356 CGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSC 415

Query: 156 VIRGCVALGSRALCELI-HGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
           +++ C+   S A   L+ HG  +KLG     +V N+++  Y+    +D A+ +F  M  +
Sbjct: 416 LLK-CITCLSCARDGLVAHGYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQ 474

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
           D ISW  ++          +A+++F  M       D+  LL+++   A       G+ +H
Sbjct: 475 DTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPACARSHYWFVGRVVH 534

Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
              V  GL  E  L+N+++ MYS C D  S+  +F  + +K++VSWTA+I+ Y + G   
Sbjct: 535 GYSVKTGLIGETSLANALLDMYSNCSDWHSTNQIFRNMAQKNVVSWTAMITSYTRAG--- 591

Query: 335 EALNQFIKMRQEKT-DSV--DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ 391
              ++   + QE   D +  D   + S+L       +L+    +HG A   G  +   V 
Sbjct: 592 -LFDKVAGLLQEMVLDGIKPDVFAVTSVLHGFAGDESLKQGKSVHGYAIRNGMEKLLPVA 650

Query: 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE 451
           N L+  Y  C N++ A +VF+ +   +D++SWNT+I GY  N     + +L+  M    +
Sbjct: 651 NALMEMYVNCRNMEEARLVFDHVTN-KDIISWNTLIGGYSRNNFANESFSLFSDMLLQFK 709

Query: 452 VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDAS 511
            P++ T   IL A         G  I    +    ++ S      +VD+  + G L  A 
Sbjct: 710 -PNTVTMTCILPAVASISSLERGREIHAYALRRGFLEDSYTS-NALVDMYVKCGALLVAR 767

Query: 512 GLAGKLLEGMGPNI--WRALLSGCVLHVGRFQDAEALRSGSQKKGI 555
            L  +L +    N+  W  +++G  +H G  +DA AL    +  G+
Sbjct: 768 VLFDRLTK---KNLISWTIMIAGYGMH-GCGKDAVALFEQMRGSGV 809



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 130/494 (26%), Positives = 231/494 (46%), Gaps = 38/494 (7%)

Query: 10  KLLSNYFKSGKIKEAENLFDEIPEK--NVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           +L+  Y K G +  A  +FDE+P +  +V  W+ ++  Y+  G  ++ +  F  M   G+
Sbjct: 135 RLVLAYLKCGDLGGARMVFDEMPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGV 194

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES----------------------D 105
            P++  +  VL   A L ++     IHGL+ K GL                         
Sbjct: 195 SPDAHAVSCVLKCIASLGSITEGEVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQ 254

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F+ +     +S N+ ++G+ +N    +AV LF+     G   ++VT+L+V+  C  LG 
Sbjct: 255 VFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELGF 314

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLD---------MYSCLMDLDAAIQIFREMECK-D 215
             + +++HG ++K GL+ D+    S +D         MY    D+ +A ++F  M  K +
Sbjct: 315 ELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGN 374

Query: 216 VISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
           V  W  +MG +       ++L +F +M +  I  D  AL  L+     L   + G   H 
Sbjct: 375 VHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCITCLSCARDGLVAHG 434

Query: 276 QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
            +V  G  ++  + N++I+ Y+K   +D++  VF+++  +  +SW ++ISG   NG   E
Sbjct: 435 YLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSE 494

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLI 395
           A+  F++M  +  + +DS TL+S+L A        +   +HG + + G     S+ N L+
Sbjct: 495 AIELFVRMWMQGHE-LDSTTLLSVLPACARSHYWFVGRVVHGYSVKTGLIGETSLANALL 553

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
             YS C +      +F  M   ++VVSW  +I  Y   G  +    L  +M   G  PD 
Sbjct: 554 DMYSNCSDWHSTNQIFRNMA-QKNVVSWTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDV 612

Query: 456 STYLSILNACGHAG 469
               S+L+  G AG
Sbjct: 613 FAVTSVLH--GFAG 624



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 136/482 (28%), Positives = 220/482 (45%), Gaps = 58/482 (12%)

Query: 119 NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIK 178
            ++++ +     FQ+ V LF   +  G+ P+A  +  V++   +LGS    E+IHGL  K
Sbjct: 167 TSLMSAYAKAGDFQEGVSLFRQMQCCGVSPDAHAVSCVLKCIASLGSITEGEVIHGLLEK 226

Query: 179 LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKI 238
           LGL    +V N+++ +YS    ++ A+Q+F  M  +D ISW   +  +    +   A+ +
Sbjct: 227 LGLGEACAVANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTISGYFSNGWHDRAVDL 286

Query: 239 FREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR---------LS 289
           F +M        +V +L+++   A LG    GK +H   +  GL  +L          L 
Sbjct: 287 FSKMWSEGTEISSVTVLSVLPACAELGFELVGKVVHGYSMKSGLLWDLESVQSGIDEALG 346

Query: 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVS-WTAIISGYVQNGCAREALNQFIKMRQEKT 348
           + ++ MY KCGD+ S+R VF+ +  K  V  W  I+ GY +     E+L  F +M  E  
Sbjct: 347 SKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQM-HELG 405

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
            + D   L  +L     L+     L  HG   + GF    +V N LIS Y+K   +D A 
Sbjct: 406 ITPDEHALSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAVCNALISFYAKSNMIDNAV 465

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG-- 466
           +VF+ M   +D +SWN++I G   NG    A+ L+ +M   G   DS+T LS+L AC   
Sbjct: 466 LVFDRMPH-QDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPACARS 524

Query: 467 ---------HAGLTNDGLV------------------------IFNQMIEENKVKPSQEH 493
                    H      GL+                        IF  M ++N V      
Sbjct: 525 HYWFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQIFRNMAQKNVVS----- 579

Query: 494 YGCVVDLLARAGCLSDASGLAGKL-LEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQK 552
           +  ++    RAG     +GL  ++ L+G+ P+++ A+ S  VLH   F   E+L+ G   
Sbjct: 580 WTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVF-AVTS--VLH--GFAGDESLKQGKSV 634

Query: 553 KG 554
            G
Sbjct: 635 HG 636



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 145/295 (49%), Gaps = 12/295 (4%)

Query: 200 DLDAAIQIFREMECK--DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNL 257
           DL  A  +F EM  +  DV  WT +M  +       + + +FR+M+   +  D  A+  +
Sbjct: 145 DLGGARMVFDEMPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGVSPDAHAVSCV 204

Query: 258 ISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSL 317
           +   A LG +  G+ +H  +   GL     ++N++IA+YS+CG ++ +  VF+ +  +  
Sbjct: 205 LKCIASLGSITEGEVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQVFDSMHARDA 264

Query: 318 VSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHG 377
           +SW + ISGY  NG    A++ F KM  E T+ + S+T++S+L A  EL    +   +HG
Sbjct: 265 ISWNSTISGYFSNGWHDRAVDLFSKMWSEGTE-ISSVTVLSVLPACAELGFELVGKVVHG 323

Query: 378 IAFEAG-FPRYRSVQNC--------LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIY 428
            + ++G      SVQ+         L+  Y KCG++  A  VF+ M    +V  WN I+ 
Sbjct: 324 YSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMG 383

Query: 429 GYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIE 483
           GY      E +L L+ +M E G  PD      +L          DGLV    +++
Sbjct: 384 GYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCITCLSCARDGLVAHGYLVK 438


>gi|224069617|ref|XP_002303012.1| predicted protein [Populus trichocarpa]
 gi|222844738|gb|EEE82285.1| predicted protein [Populus trichocarpa]
          Length = 815

 Score =  278 bits (711), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 174/562 (30%), Positives = 281/562 (50%), Gaps = 33/562 (5%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  + ++   ++S Y KSG +  A  +FD+  E+ VV+W+ +I  YS +     + K F+
Sbjct: 70  PNRNSFSIDIIISGYVKSGNLTVARRIFDDTDERTVVAWTTMIGAYSKSNRFGDAFKLFA 129

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSI---HGLMVKFG--LESDLFEGLKNPYL 115
            M  SG  P+  T + +L    G  +LE+A+ +   H  +VK G  L   +   L + Y 
Sbjct: 130 EMHRSGSQPDYVTYITLLT---GCNDLEVAKELYQAHAQIVKLGHHLNHRVCNTLLDSYF 186

Query: 116 --------------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLT 155
                               VS N ++ G+ NN L ++A+ LF   +  G  P+  T   
Sbjct: 187 KTGGLDSARRLFLEMCGWDSVSFNVMITGYANNGLNEEAIELFVEMQNLGFKPSDFTFAA 246

Query: 156 VIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKD 215
           VI   V L   A  + IHG  +K   I +V V N+ LD YS    ++   ++F EM   D
Sbjct: 247 VISASVGLDDTAFGQQIHGFVVKTSFIRNVFVGNAFLDFYSKHDCVNEVRKLFNEMPELD 306

Query: 216 VISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
            +S+  ++  +       +++ +F+E++ +           ++S+ A   DL+ G+QLHA
Sbjct: 307 GVSYNVIITAYAWVGKVKESIDLFQELQFTTFDRKNFPFPTMLSIAASSLDLQMGRQLHA 366

Query: 276 QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
           QVV+     + R+SNS++ MY+KCG  + +  +F +++ +S V WTA+IS  VQ G    
Sbjct: 367 QVVVSMADPDFRVSNSLVDMYAKCGKFEEADRIFLRLSSRSTVPWTAMISANVQRGLHEN 426

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC-L 394
            L  F +MR+    S D  T   +L AS  LA++ +  QLH     +GF    S   C L
Sbjct: 427 GLKLFYEMRRANV-SADQATFACVLKASANLASILLGKQLHSCVIRSGFMNVYS--GCAL 483

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           +  Y+ C ++  A   FEEM   R+VV+WN ++  Y  NG G+  L  + +M  +G  PD
Sbjct: 484 LDMYANCASIKDAIKTFEEMS-ERNVVTWNALLSAYAQNGDGKGTLKSFEEMIMSGYQPD 542

Query: 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLA 514
           S ++L IL AC H  L  +GL  FN M     + P +EHY  +VD L R+G   +A  L 
Sbjct: 543 SVSFLCILTACSHCRLVEEGLKYFNDMSGVYNLAPKREHYTAMVDALCRSGRFDEAEKLM 602

Query: 515 GKLLEGMGPNIWRALLSGCVLH 536
           G++       +W ++L+ C +H
Sbjct: 603 GQMPFEPDEIVWTSVLNSCRIH 624



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 125/291 (42%), Gaps = 46/291 (15%)

Query: 273 LHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNG- 331
           + A++V  G        N +I   S+ G L  +R + +Q+  ++  S   IISGYV++G 
Sbjct: 30  IDARIVKTGFDPITSRFNFMIKDLSERGQLCQARQLLDQMPNRNSFSIDIIISGYVKSGN 89

Query: 332 --CAR----------------------------EALNQFIKMRQEKTDSVDSITLVSILT 361
              AR                            +A   F +M +  +   D +T +++LT
Sbjct: 90  LTVARRIFDDTDERTVVAWTTMIGAYSKSNRFGDAFKLFAEMHRSGSQP-DYVTYITLLT 148

Query: 362 ASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFLRDV 420
              +L   +   Q H    + G      V N L+ SY K G +D A  +F EM G+  D 
Sbjct: 149 GCNDLEVAKELYQAHAQIVKLGHHLNHRVCNTLLDSYFKTGGLDSARRLFLEMCGW--DS 206

Query: 421 VSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQ 480
           VS+N +I GY  NG  E A+ L+ +M   G  P   T+ ++++A    GL +     F Q
Sbjct: 207 VSFNVMITGYANNGLNEEAIELFVEMQNLGFKPSDFTFAAVISAS--VGLDDTA---FGQ 261

Query: 481 MIEENKVKPSQEHY----GCVVDLLARAGCLSDASGLAGKL--LEGMGPNI 525
            I    VK S           +D  ++  C+++   L  ++  L+G+  N+
Sbjct: 262 QIHGFVVKTSFIRNVFVGNAFLDFYSKHDCVNEVRKLFNEMPELDGVSYNV 312



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 100/215 (46%), Gaps = 19/215 (8%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y+   LL  Y     IK+A   F+E+ E+NVV+W+ ++  Y+ NG  + ++K+F  M++S
Sbjct: 478 YSGCALLDMYANCASIKDAIKTFEEMSERNVVTWNALLSAYAQNGDGKGTLKSFEEMIMS 537

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE--SDLFEGLKN--PYLVSCNAI 121
           G  P+S + + +L A +           H  +V+ GL+  +D+  G+ N  P      A+
Sbjct: 538 GYQPDSVSFLCILTACS-----------HCRLVEEGLKYFNDM-SGVYNLAPKREHYTAM 585

Query: 122 VAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGL 181
           V     +  F +A  L          P+ +   +V+  C    + AL     G    + +
Sbjct: 586 VDALCRSGRFDEAEKLMG---QMPFEPDEIVWTSVLNSCRIHKNYALARKAAGQLFNMKV 642

Query: 182 ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
           + D +   ++ ++++     D+ +++ + M  + V
Sbjct: 643 LRDAAPYVTMSNIFAEAGQWDSVVKVKKAMRDRGV 677


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  278 bits (711), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 184/613 (30%), Positives = 301/613 (49%), Gaps = 62/613 (10%)

Query: 12  LSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNS 71
           L  +   G++  A  +FD IP  +  +++ +I  YS  G    ++  +  M+   + PN 
Sbjct: 40  LEQHIARGQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNK 99

Query: 72  FTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPYL-------------- 115
           +T   VL A + L +L   R+IH      GL +DLF    L + Y+              
Sbjct: 100 YTFPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAK 159

Query: 116 ------VSCNAIVAGFINNKLFQQAVL-LFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
                 V+ NA++AG+ N+ ++  A+  L +     GL PNA T+++++      G+   
Sbjct: 160 MPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQ 219

Query: 169 CELIHGLTIKLGLILD---VSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
              +H   ++  L  +   V +  ++LDMY+    L  A ++F  M  ++ ++W+ ++G 
Sbjct: 220 GTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGG 279

Query: 226 FVDFEYAGDALKIFREMR-KSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
           FV  +   +A  +F++M  +        ++ + + V A L DL+ G QLHA +   G+ +
Sbjct: 280 FVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIHA 339

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           +L   NS+++MY+K G ++ +  +F++I  K  +S+ A++SGYVQNG A EA   F KM 
Sbjct: 340 DLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKM- 398

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
           Q      D  T+VS++ A   LAAL+     HG     G     S+ N LI  Y+KCG +
Sbjct: 399 QACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSICNSLIDMYAKCGRI 458

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           DL+  VF++M   RD+VSWNT+I GYG++G G+ A  L+  M   G  PD  T++ ++ A
Sbjct: 459 DLSRQVFDKMP-ARDIVSWNTMIAGYGIHGLGKEATTLFLSMKNQGFEPDDVTFICLIAA 517

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C H+GL  +G   F+ M  +  + P  EHY C+VDLLAR G L +A      +       
Sbjct: 518 CSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGFLDEAYQFIQSMPLKADVR 577

Query: 525 IWRALLSGCVLH---------------------------------VGRFQDAEALRSGSQ 551
           +W ALL  C +H                                  GRF +A  +R   +
Sbjct: 578 VWGALLGACRIHKNIDLGKQVSRMIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQK 637

Query: 552 KKGIIKIPGISFL 564
            KG  K PG S++
Sbjct: 638 VKGFKKSPGCSWI 650



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 117/457 (25%), Positives = 219/457 (47%), Gaps = 39/457 (8%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + S+ L+  Y +  +   A N+F ++P ++VV+W+ ++ GY+ +G +  ++     M 
Sbjct: 133 DLFVSTALIDLYIRCARFGPAANVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQ 192

Query: 64  -LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
              GL PN+ T+V +L   A    L    S+H   ++  L+ +                 
Sbjct: 193 DRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKC 252

Query: 106 --------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGL-VPNAVTMLTV 156
                   +F G+     V+ +A++ GF+      +A  LF      G+   +A ++ + 
Sbjct: 253 KHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASA 312

Query: 157 IRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
           +R C +L    +   +H L  K G+  D++  NS+L MY+    ++ A  +F E+  KD 
Sbjct: 313 LRVCASLADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDT 372

Query: 217 ISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQ 276
           IS+  ++  +V    A +A  +F++M+   +  D   +++LI   + L  L+ G+  H  
Sbjct: 373 ISYGALLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGS 432

Query: 277 VVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
           V++ GL  E  + NS+I MY+KCG +D SR VF+++  + +VSW  +I+GY  +G  +EA
Sbjct: 433 VIIRGLALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEA 492

Query: 337 LNQFIKMRQE--KTDSVDSITLVSILTASGELAA----LEICLQLHGIAFEAGFPRYRSV 390
              F+ M+ +  + D V  I L++  + SG +       +     +GI      PR    
Sbjct: 493 TTLFLSMKNQGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGI-----LPRMEHY 547

Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
             C++   ++ G +D AY   + M    DV  W  ++
Sbjct: 548 I-CMVDLLARGGFLDEAYQFIQSMPLKADVRVWGALL 583


>gi|356532311|ref|XP_003534717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Glycine max]
          Length = 755

 Score =  278 bits (711), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 174/553 (31%), Positives = 272/553 (49%), Gaps = 27/553 (4%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D Y +S L++ Y K G    A  +FD +PE+NVV W+ +I  YS  G   ++   F  M
Sbjct: 94  LDAYIASSLINFYAKFGFADVARKVFDYMPERNVVPWTTIIGCYSRTGRVPEAFSLFDEM 153

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
              G+ P+S T++ +L    G+  L   + +HG  + +G  SD                 
Sbjct: 154 RRQGIQPSSVTVLSLLF---GVSELAHVQCLHGCAILYGFMSDINLSNSMLNVYGKCGNI 210

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                LF+ + +  LVS N++++ +       + +LL    R  G      T  +V+   
Sbjct: 211 EYSRKLFDYMDHRDLVSWNSLISAYAQIGNICEVLLLLKTMRLQGFEAGPQTFGSVLSVA 270

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
            + G   L   +HG  ++ G  LD  V  S++ +Y     +D A ++F     KDV+ WT
Sbjct: 271 ASRGELKLGRCLHGQILRAGFYLDAHVETSLIVVYLKGGKIDIAFRMFERSSDKDVVLWT 330

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+   V    A  AL +FR+M K  +   T  + ++I+  A LG    G  +   ++  
Sbjct: 331 AMISGLVQNGSADKALAVFRQMLKFGVKPSTATMASVITACAQLGSYNLGTSILGYILRQ 390

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
            L  ++   NS++ MY+KCG LD S  VF+ +  + LVSW A+++GY QNG   EAL  F
Sbjct: 391 ELPLDVATQNSLVTMYAKCGHLDQSSIVFDMMNRRDLVSWNAMVTGYAQNGYVCEALFLF 450

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            +MR +   + DSIT+VS+L        L +   +H      G      V   L+  Y K
Sbjct: 451 NEMRSDN-QTPDSITIVSLLQGCASTGQLHLGKWIHSFVIRNGLRPCILVDTSLVDMYCK 509

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CG++D A   F +M    D+VSW+ II GYG +G GE AL  Y K  E+G  P+   +LS
Sbjct: 510 CGDLDTAQRCFNQMPS-HDLVSWSAIIVGYGYHGKGEAALRFYSKFLESGMKPNHVIFLS 568

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           +L++C H GL   GL I+  M ++  + P  EH+ CVVDLL+RAG + +A  +  K    
Sbjct: 569 VLSSCSHNGLVEQGLNIYESMTKDFGIAPDLEHHACVVDLLSRAGRVEEAYNVYKKKFPD 628

Query: 521 MGPNIWRALLSGC 533
              ++   +L  C
Sbjct: 629 PVLDVLGIILDAC 641



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 132/491 (26%), Positives = 247/491 (50%), Gaps = 28/491 (5%)

Query: 42  VIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG 101
            I+ +S  G H + +  ++ M+ + +  +++T   +L A + L    L  ++H  ++  G
Sbjct: 32  TINHHSTQGAHHQVLATYASMLKTHVPSDAYTFPSLLKACSFLNLFSLGLTLHQRILVSG 91

Query: 102 LESD----------------------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFN 139
           L  D                      +F+ +    +V    I+  +       +A  LF+
Sbjct: 92  LSLDAYIASSLINFYAKFGFADVARKVFDYMPERNVVPWTTIIGCYSRTGRVPEAFSLFD 151

Query: 140 FFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLM 199
             R  G+ P++VT+L+++ G   L   A  + +HG  I  G + D++++NS+L++Y    
Sbjct: 152 EMRRQGIQPSSVTVLSLLFGVSEL---AHVQCLHGCAILYGFMSDINLSNSMLNVYGKCG 208

Query: 200 DLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLIS 259
           +++ + ++F  M+ +D++SW  ++  +       + L + + MR            +++S
Sbjct: 209 NIEYSRKLFDYMDHRDLVSWNSLISAYAQIGNICEVLLLLKTMRLQGFEAGPQTFGSVLS 268

Query: 260 VNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVS 319
           V A  G+LK G+ LH Q++  G   +  +  S+I +Y K G +D +  +F + ++K +V 
Sbjct: 269 VAASRGELKLGRCLHGQILRAGFYLDAHVETSLIVVYLKGGKIDIAFRMFERSSDKDVVL 328

Query: 320 WTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIA 379
           WTA+ISG VQNG A +AL  F +M +       + T+ S++TA  +L +  +   + G  
Sbjct: 329 WTAMISGLVQNGSADKALAVFRQMLKFGVKP-STATMASVITACAQLGSYNLGTSILGYI 387

Query: 380 FEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETA 439
                P   + QN L++ Y+KCG++D + IVF+ M   RD+VSWN ++ GY  NG+   A
Sbjct: 388 LRQELPLDVATQNSLVTMYAKCGHLDQSSIVFDMMN-RRDLVSWNAMVTGYAQNGYVCEA 446

Query: 440 LALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVD 499
           L L+++M    + PDS T +S+L  C   G  + G  I + +I  N ++P       +VD
Sbjct: 447 LFLFNEMRSDNQTPDSITIVSLLQGCASTGQLHLGKWIHSFVI-RNGLRPCILVDTSLVD 505

Query: 500 LLARAGCLSDA 510
           +  + G L  A
Sbjct: 506 MYCKCGDLDTA 516


>gi|15240583|ref|NP_196827.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181132|sp|Q9LYV3.1|PP377_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial; Flags: Precursor
 gi|7529278|emb|CAB86630.1| putative protein [Arabidopsis thaliana]
 gi|332004486|gb|AED91869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score =  278 bits (711), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 173/557 (31%), Positives = 293/557 (52%), Gaps = 36/557 (6%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C+D + ++ LL+ Y K+G  K+A NLFDE+PE+N VS+  +  GY+     +  +  +S 
Sbjct: 81  CLDLFATNILLNAYVKAGFDKDALNLFDEMPERNNVSFVTLAQGYAC----QDPIGLYSR 136

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------- 105
           +   G   N       L     L   E+   +H  +VK G +S+                
Sbjct: 137 LHREGHELNPHVFTSFLKLFVSLDKAEICPWLHSPIVKLGYDSNAFVGAALINAYSVCGS 196

Query: 106 ------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                 +FEG+    +V    IV+ ++ N  F+ ++ L +  R +G +PN  T  T ++ 
Sbjct: 197 VDSARTVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKA 256

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
            + LG+    + +HG  +K   +LD  V   +L +Y+ L D+  A ++F EM   DV+ W
Sbjct: 257 SIGLGAFDFAKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPW 316

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           + M+  F    +  +A+ +F  MR++ ++ +   L ++++  AI      G+QLH  VV 
Sbjct: 317 SFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVK 376

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G   ++ +SN++I +Y+KC  +D++  +F +++ K+ VSW  +I GY   G   +A + 
Sbjct: 377 VGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSM 436

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           F +  + +  SV  +T  S L A   LA++++ +Q+HG+A +    +  +V N LI  Y+
Sbjct: 437 FREALRNQV-SVTEVTFSSALGACASLASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYA 495

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           KCG++  A  VF EM  + DV SWN +I GY  +G G  AL +   M +    P+  T+L
Sbjct: 496 KCGDIKFAQSVFNEMETI-DVASWNALISGYSTHGLGRQALRILDIMKDRDCKPNGLTFL 554

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519
            +L+ C +AGL + G   F  MI ++ ++P  EHY C+V LL R+G L  A     KL+E
Sbjct: 555 GVLSGCSNAGLIDQGQECFESMIRDHGIEPCLEHYTCMVRLLGRSGQLDKAM----KLIE 610

Query: 520 GMG--PN--IWRALLSG 532
           G+   P+  IWRA+LS 
Sbjct: 611 GIPYEPSVMIWRAMLSA 627



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 120/454 (26%), Positives = 212/454 (46%), Gaps = 16/454 (3%)

Query: 98  VKFGLESD---LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTML 154
           VK G + D   LF+ +     VS   +  G+      Q  + L++     G   N     
Sbjct: 95  VKAGFDKDALNLFDEMPERNNVSFVTLAQGYA----CQDPIGLYSRLHREGHELNPHVFT 150

Query: 155 TVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
           + ++  V+L    +C  +H   +KLG   +  V  ++++ YS    +D+A  +F  + CK
Sbjct: 151 SFLKLFVSLDKAEICPWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARTVFEGILCK 210

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
           D++ W  ++  +V+  Y  D+LK+   MR +  + +       +  +  LG     K +H
Sbjct: 211 DIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGAFDFAKGVH 270

Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
            Q++      + R+   ++ +Y++ GD+  +  VFN++ +  +V W+ +I+ + QNG   
Sbjct: 271 GQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCN 330

Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
           EA++ FI+MR E     +  TL SIL          +  QLHG+  + GF     V N L
Sbjct: 331 EAVDLFIRMR-EAFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDIYVSNAL 389

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           I  Y+KC  +D A  +F E+   ++ VSWNT+I GY   G G  A +++ +         
Sbjct: 390 IDVYAKCEKMDTAVKLFAELSS-KNEVSWNTVIVGYENLGEGGKAFSMFREALRNQVSVT 448

Query: 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLA 514
             T+ S L AC      + G+ +    I+ N  K        ++D+ A+ G +  A  + 
Sbjct: 449 EVTFSSALGACASLASMDLGVQVHGLAIKTNNAKKVAVS-NSLIDMYAKCGDIKFAQSVF 507

Query: 515 GKLLEGMGPNIWRALLSGCVLH-VGRFQDAEALR 547
            + +E +    W AL+SG   H +GR    +ALR
Sbjct: 508 NE-METIDVASWNALISGYSTHGLGR----QALR 536



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 143/313 (45%), Gaps = 8/313 (2%)

Query: 155 TVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMY-SCLMDLDAAIQIFREMEC 213
            ++R C+        + IH   +K G  LD+   N +L+ Y     D D A+ +F EM  
Sbjct: 54  AMLRRCIQKNDPISAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKD-ALNLFDEMPE 112

Query: 214 KDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQL 273
           ++ +S+  +   +       D + ++  + +     +     + + +   L   +    L
Sbjct: 113 RNNVSFVTLAQGYA----CQDPIGLYSRLHREGHELNPHVFTSFLKLFVSLDKAEICPWL 168

Query: 274 HAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA 333
           H+ +V  G  S   +  ++I  YS CG +DS+R+VF  I  K +V W  I+S YV+NG  
Sbjct: 169 HSPIVKLGYDSNAFVGAALINAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVENGYF 228

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC 393
            ++L     MR       ++ T  + L AS  L A +    +HG   +  +     V   
Sbjct: 229 EDSLKLLSCMRMAGF-MPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVG 287

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           L+  Y++ G++  A+ VF EM    DVV W+ +I  +  NG    A+ L+ +M E   VP
Sbjct: 288 LLQLYTQLGDMSDAFKVFNEMP-KNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVP 346

Query: 454 DSSTYLSILNACG 466
           +  T  SILN C 
Sbjct: 347 NEFTLSSILNGCA 359


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  278 bits (711), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 174/550 (31%), Positives = 284/550 (51%), Gaps = 24/550 (4%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           +KL+S + K G I EA  +F+ I +K    +  ++ GY+ N   E ++     M    + 
Sbjct: 85  TKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVK 144

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY------------ 114
           P  +    +L       +L+  + IHG ++     +++F   G+ N Y            
Sbjct: 145 PVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKM 204

Query: 115 --------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
                   LVS N I+AGF  N   ++A+ L    +  G  P+++T++TV+     +G  
Sbjct: 205 FDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLL 264

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
            + + IHG  I+ G    V+++ ++ DMYS    ++ A  IF  M+ K V+SW  MM  +
Sbjct: 265 MVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGY 324

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
           V       A+ +F +M +  I    V ++  +   A LGDL+RGK +H  V    L S++
Sbjct: 325 VQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDI 384

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            + NS+I+MYSKC  +D +  +FN +  ++ VSW A+I GY QNG   EALN F +M+  
Sbjct: 385 SVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSL 444

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
                DS T+VS++ A  EL+       +HG+   +   +   V   L+  YSKCG + +
Sbjct: 445 GMKP-DSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHM 503

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           A  +F +M   R V++WN +I GYG +G G  AL L+ KM +    P+  TYLS+++AC 
Sbjct: 504 ARKLF-DMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACS 562

Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIW 526
           H+GL ++GL  F  M ++  ++PS +HYG +VDLL RAG + +A      +    G  ++
Sbjct: 563 HSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVY 622

Query: 527 RALLSGCVLH 536
            A    C +H
Sbjct: 623 GAXXGACKIH 632



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 132/274 (48%), Gaps = 22/274 (8%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ L   Y K G ++ A  +FD + +K VVSW+ ++ GY  NG  EK++  F  M+  G+
Sbjct: 286 STALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGI 345

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL----------------------ESD 105
            P   T++  L A A L +LE  + +H  + +  L                       SD
Sbjct: 346 DPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASD 405

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F  L     VS NA++ G+  N    +A+  F+  +  G+ P++ TM++VI     L  
Sbjct: 406 IFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSV 465

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
               + IHGL I+  L  ++ V  +++DMYS    +  A ++F  +  + VI+W  M+  
Sbjct: 466 TRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDG 525

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLIS 259
           +        AL +F +M+K  +  + +  L++IS
Sbjct: 526 YGTHGLGRAALDLFDKMKKGAVEPNDITYLSVIS 559



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 101/204 (49%), Gaps = 2/204 (0%)

Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISG 326
           +K   Q+   V+  GL +E      +++++SK G ++ +  VF  I +K    +  ++ G
Sbjct: 62  MKELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKG 121

Query: 327 YVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPR 386
           Y +N     AL    +MR +    V       +L   G+ A L+   ++HG      F  
Sbjct: 122 YAKNSSLETALAFLCRMRYDDVKPV-VYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAA 180

Query: 387 YRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM 446
                  +++ Y+KC  +D AY +F+ M   RD+VSWNTII G+  NG  + AL L  +M
Sbjct: 181 NVFAMTGVVNMYAKCRQIDDAYKMFDRMP-ERDLVSWNTIIAGFSQNGFAKKALELVLRM 239

Query: 447 TETGEVPDSSTYLSILNACGHAGL 470
            + G+ PDS T +++L A    GL
Sbjct: 240 QDEGQRPDSITLVTVLPAAADVGL 263


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  278 bits (710), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 184/609 (30%), Positives = 312/609 (51%), Gaps = 56/609 (9%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSING-FHEKSMKAFSHMMLSG 66
           S++L++ Y   G +  +   FD+IP+K+V +W+ +I  Y  NG FHE     +  +++S 
Sbjct: 154 STRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHNGHFHEAIGCFYQLLLVSE 213

Query: 67  LLPNSFTMVGVLVAAAGL----------------QNLELARSIHGLMVKFG---LESDLF 107
           + P+ +T   VL A   L                 N+ +A S+  +  +FG   +   LF
Sbjct: 214 IRPDFYTFPPVLKACGTLVDGRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLF 273

Query: 108 EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRA 167
           + +    + S NA+++G I N    QA+ + +  R  G+  N VT+++++  C  LG  +
Sbjct: 274 DDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDIS 333

Query: 168 LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
              LIH   IK GL  D+ V+N++++MY+   +L+ A + F++M   DV+SW  ++  + 
Sbjct: 334 TAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYE 393

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL-GGLQSEL 286
             +    A   F +M+ +    D + L++L S+ A   D K  + +H  ++  G L  ++
Sbjct: 394 QNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDV 453

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            + N+++ MY+K G LDS+  VF  I  K ++SW  +I+GY QNG A EA+  +  M + 
Sbjct: 454 VIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEEC 513

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
           K    +  T VSIL A   + AL+  +++HG   +        V  CLI  Y KCG +  
Sbjct: 514 KEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVD 573

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           A  +F ++      V+WN II  +G++GH E  L L+ +M + G  PD  T++S+L+AC 
Sbjct: 574 AMSLFYQVP-QESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACS 632

Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIW 526
           H+G   +G   F ++++E  +KPS +HYGC+VDLL RAG L  A G    +      +IW
Sbjct: 633 HSGFVEEGKWCF-RLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYGFIKDMPLQPDASIW 691

Query: 527 RALLSGCVLH---------------------------------VGRFQDAEALRSGSQKK 553
            ALL  C +H                                 VG+++  + +RS ++++
Sbjct: 692 GALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARER 751

Query: 554 GIIKIPGIS 562
           G+ K PG S
Sbjct: 752 GLKKTPGWS 760



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 136/461 (29%), Positives = 226/461 (49%), Gaps = 26/461 (5%)

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG---LESDLFEGLKNPYLVSCNAIVAGF 125
           P +  +  +LV A  +Q++ ++  +  L    G   L    F+ +    + + N++++ +
Sbjct: 133 PFAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAY 192

Query: 126 INNKLFQQAV-LLFNFFRGSGLVPNAVTMLTVIRGCVAL--GSRALCELIHGLTIKLGLI 182
           ++N  F +A+   +     S + P+  T   V++ C  L  G R     IH    KLG  
Sbjct: 193 VHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVDGRR-----IHCWAFKLGFQ 247

Query: 183 LDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREM 242
            +V V  S++ MYS       A  +F +M  +D+ SW  M+   +    A  AL +  EM
Sbjct: 248 WNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEM 307

Query: 243 RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDL 302
           R   I  + V +++++ V   LGD+     +H  V+  GL+ +L +SN++I MY+K G+L
Sbjct: 308 RLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNL 367

Query: 303 DSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTA 362
           + +R  F Q+    +VSW +II+ Y QN     A   F+KM Q      D +TLVS+ + 
Sbjct: 368 EDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKM-QLNGFQPDLLTLVSLASI 426

Query: 363 SGELAALEICLQLHGIAFEAGFPRYRSV-QNCLISSYSKCGNVDLAYIVFEEMGFLRDVV 421
             +    +    +HG     G+     V  N ++  Y+K G +D A+ VFE +  ++DV+
Sbjct: 427 VAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEII-LVKDVI 485

Query: 422 SWNTIIYGYGVNGHGETALALYHKMTETGE-VPDSSTYLSILNACGHAGLTNDGLVIFNQ 480
           SWNT+I GY  NG    A+ +Y  M E  E +P+  T++SIL A  H G    G+ I  +
Sbjct: 486 SWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGR 545

Query: 481 MIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           +I+ N       H    V     A CL D  G  G+L++ M
Sbjct: 546 VIKTNL------HLDVFV-----ATCLIDVYGKCGRLVDAM 575



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 150/325 (46%), Gaps = 24/325 (7%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
            D + S+ L++ Y K G +++A   F ++   +VVSW+ +I  Y  N     +   F  M
Sbjct: 349 FDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKM 408

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG--------------------- 101
            L+G  P+  T+V +    A  ++ + +RS+HG +++ G                     
Sbjct: 409 QLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGL 468

Query: 102 LES--DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRG-SGLVPNAVTMLTVIR 158
           L+S   +FE +    ++S N ++ G+  N L  +A+ ++        ++PN  T ++++ 
Sbjct: 469 LDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILP 528

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
               +G+      IHG  IK  L LDV V   ++D+Y     L  A+ +F ++  +  ++
Sbjct: 529 AYAHVGALQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVT 588

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           W  ++       +A   LK+F EM    +  D V  ++L+S  +  G ++ GK     + 
Sbjct: 589 WNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQ 648

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLD 303
             G++  L+    ++ +  + G L+
Sbjct: 649 EYGIKPSLKHYGCMVDLLGRAGYLE 673



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 72/343 (20%), Positives = 150/343 (43%), Gaps = 52/343 (15%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D + ++ L+  Y K G++ +A +LF ++P+++ V+W+ +I  + I+G  EK++K F  M
Sbjct: 553 LDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEM 612

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIV 122
           +  G+ P+  T V +L A +    +E  +    LM ++G++         P L     +V
Sbjct: 613 LDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQEYGIK---------PSLKHYGCMV 663

Query: 123 -----AGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC-----VALGSRALCELI 172
                AG++         + + F +   L P+A     ++  C     + LG  A   L 
Sbjct: 664 DLLGRAGYLE--------MAYGFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLF 715

Query: 173 HGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM-MGLFVDFEY 231
              +  +G  + +S   + +  +     +D    + RE   K    W+ + +   VD  Y
Sbjct: 716 EVDSKNVGYYVLLSNIYANVGKWE---GVDKVRSLARERGLKKTPGWSTIEVNRKVDVFY 772

Query: 232 AGD-----ALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
            G+       +I+ E+R   +     +L  +   + +L D++  ++ H   +L      L
Sbjct: 773 TGNQSHPKCKEIYEELRV--LTAKMKSLGYIPDYSFVLQDVEEDEKEH---ILTSHSERL 827

Query: 287 RLSNSIIAMYSK-----------CGDLDSSRSVFNQITEKSLV 318
            ++  II+   K           CGD  ++    ++IT++ +V
Sbjct: 828 AIAFGIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIV 870


>gi|357468471|ref|XP_003604520.1| Coatomer subunit beta'-2 [Medicago truncatula]
 gi|355505575|gb|AES86717.1| Coatomer subunit beta'-2 [Medicago truncatula]
          Length = 1033

 Score =  278 bits (710), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 189/625 (30%), Positives = 296/625 (47%), Gaps = 60/625 (9%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P +   NS   L    K GKI EA ++F+++  ++ +SW+ +I GY       +++  FS
Sbjct: 82  PNMPELNSQ--LKQLMKLGKICEARDMFNKMSHRDEISWTNLIAGYVNAANSNEALILFS 139

Query: 61  HMML-SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF------------ 107
           +M + SGL  + F +   L A A   N+     +HG  VK GL + +F            
Sbjct: 140 NMWVDSGLQKDQFVVSVALKACALGMNVYFGELLHGFSVKSGLINSVFVSSALVDMYMKV 199

Query: 108 ----------EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
                     E +    +VS  A++ G ++       +  F+    S +  ++ T    +
Sbjct: 200 GKTEQGCSVFENMTTRNVVSWTAVIVGLVHAGCSLDGLSYFSEMWRSKVGYDSHTFAVAL 259

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
           +     G     + IH  TIK G      V N++  MYS     D  +++F +M   DV+
Sbjct: 260 KASAESGLLHYGKAIHAQTIKQGFNETAYVVNTLGTMYSKCRKPDYVMRLFGKMSTPDVV 319

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           SWT ++  +V       AL  F+ MRKS +  +     ++IS  A L   K G+Q+H   
Sbjct: 320 SWTNLIMTYVQMGDEERALDAFKRMRKSDVSPNEYTFASVISACANLAITKWGEQIHGHA 379

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           +  GL   L +SNSII +YSKCG L  +  VF+ +T K ++SW+ IIS Y Q   A+EA 
Sbjct: 380 LRLGLVDALSVSNSIITLYSKCGLLQEASLVFDGMTRKDIISWSTIISVYCQGSHAKEAF 439

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
           N    M +E     +   L S+L+  G +A LE   Q+H  A   G      V + LIS 
Sbjct: 440 NYLSWMSREGPKP-NEFALASVLSVCGSMALLEPGKQVHAYALCIGLDHETMVHSALISM 498

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           YS+ GN+  A  +F+ +    D+VSW  +I GY  +G+ + A++L+  ++  G +PD  T
Sbjct: 499 YSRSGNLQEASKIFDSIKN-NDIVSWTAMINGYAEHGYSQEAISLFENISSVGLMPDYVT 557

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL 517
           ++ IL AC HAGL + G   +  M  E ++ PS+EHYGC++DLL RAG LS+A  +   +
Sbjct: 558 FIGILTACNHAGLVDLGFYYYKLMTNEYQIAPSKEHYGCIIDLLCRAGRLSEAEHMVRNM 617

Query: 518 LEGMGPNIWRALLSGCVLH---------------------------------VGRFQDAE 544
                  +W  LL  C  H                                  GR ++A 
Sbjct: 618 PFPCDDVVWSTLLRACRDHGDLDRAIWAAEQMLRLHPNSAGAHITLANIYSASGRREEAA 677

Query: 545 ALRSGSQKKGIIKIPGISFLNSTSR 569
            +R   + KG+IK PG S++NS  +
Sbjct: 678 HVRKLMKSKGVIKEPGWSWINSNDQ 702


>gi|297844454|ref|XP_002890108.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335950|gb|EFH66367.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 866

 Score =  278 bits (710), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 170/552 (30%), Positives = 289/552 (52%), Gaps = 34/552 (6%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM-LSGLLP 69
            L+ + + G + +A  +F ++ E+N+ SW++++ GY+  G+ ++++  +  M+ + G+ P
Sbjct: 135 FLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAICLYHRMLWVGGVKP 194

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LF 107
           + +T   VL    G+ +L   R +H  +V++G E D                      LF
Sbjct: 195 DVYTFPCVLRTCGGIPDLARGREVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLF 254

Query: 108 EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRA 167
           + +    ++S NA+++G+  N +  + + LF   RG  + P+ +T+ +VI  C  LG R 
Sbjct: 255 DRMPRRDIISWNAMISGYFENGMGHEGLKLFFAMRGLSVDPDLMTLTSVISACELLGDRR 314

Query: 168 LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
           L   IH   I  G  +D+SV NS+  MY        A ++F  M+CKD++SWT M+    
Sbjct: 315 LGRDIHAYVITTGFAVDISVCNSLTQMYLYAGSWREAEKLFSRMDCKDIVSWTTMIS--- 371

Query: 228 DFEY---AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            +EY      A+  +R M +  +  D + +  ++S  A LGDL  G +LH   +   L S
Sbjct: 372 GYEYNFLPEKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLIS 431

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
            + ++N++I MYSKC  +D +  +F+ I  K+++SWT+II+G   N    EAL  F +M+
Sbjct: 432 YVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFFRQMK 491

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
              T   ++ITL + L A   + AL    ++H      G      + N L+  Y +CG +
Sbjct: 492 M--TLQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRM 549

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           ++A+  F      +DV SWN ++ GY   G G   + L+ +M +    PD  T++S+L  
Sbjct: 550 NIAWNQFNSQK--KDVSSWNILLTGYSERGQGSVVVELFDRMVKARVRPDEITFISLLCG 607

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           CG + +   GL+ F++M EE  V P+ +HY CVVDLL RAG L +A     K+     P 
Sbjct: 608 CGKSQMVRQGLMYFSKM-EEYGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPA 666

Query: 525 IWRALLSGCVLH 536
           +W ALL+ C +H
Sbjct: 667 VWGALLNACRIH 678



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 121/430 (28%), Positives = 209/430 (48%), Gaps = 25/430 (5%)

Query: 43  IHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVL-----------------VAAAGLQ 85
           +HG   NG  E++MK  + M    +  +    V ++                 VA + + 
Sbjct: 66  LHGLCANGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAHEEGSKVYSVALSSMN 125

Query: 86  NL--ELARSIHGLMVKFGLESD---LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFN- 139
           +L  EL  +   + V+FG   D   +F  +    L S N +V G+     F +A+ L++ 
Sbjct: 126 SLSVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAICLYHR 185

Query: 140 FFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLM 199
                G+ P+  T   V+R C  +   A    +H   ++ G  LD+ V N+++ MY    
Sbjct: 186 MLWVGGVKPDVYTFPCVLRTCGGIPDLARGREVHVHVVRYGYELDIDVVNALITMYVKCG 245

Query: 200 DLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLIS 259
           D+ +A  +F  M  +D+ISW  M+  + +     + LK+F  MR   +  D + L ++IS
Sbjct: 246 DVKSARLLFDRMPRRDIISWNAMISGYFENGMGHEGLKLFFAMRGLSVDPDLMTLTSVIS 305

Query: 260 VNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVS 319
              +LGD + G+ +HA V+  G   ++ + NS+  MY   G    +  +F+++  K +VS
Sbjct: 306 ACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLYAGSWREAEKLFSRMDCKDIVS 365

Query: 320 WTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIA 379
           WT +ISGY  N    +A++ +  M Q+     D IT+ ++L+A   L  L+  ++LH +A
Sbjct: 366 WTTMISGYEYNFLPEKAIDTYRMMDQDSVKP-DEITVAAVLSACATLGDLDTGVELHKLA 424

Query: 380 FEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETA 439
            +A    Y  V N LI+ YSKC  +D A  +F  +   ++V+SW +II G  +N     A
Sbjct: 425 IKARLISYVIVANNLINMYSKCKCIDKALDIFHNIP-RKNVISWTSIIAGLRLNNRCFEA 483

Query: 440 LALYHKMTET 449
           L  + +M  T
Sbjct: 484 LIFFRQMKMT 493



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 116/447 (25%), Positives = 208/447 (46%), Gaps = 27/447 (6%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           ID  N+  L++ Y K G +K A  LFD +P ++++SW+ +I GY  NG   + +K F  M
Sbjct: 231 IDVVNA--LITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMGHEGLKLFFAM 288

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
               + P+  T+  V+ A   L +  L R IH  ++  G   D                 
Sbjct: 289 RGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLYAGSW 348

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                LF  +    +VS   +++G+  N L ++A+  +       + P+ +T+  V+  C
Sbjct: 349 REAEKLFSRMDCKDIVSWTTMISGYEYNFLPEKAIDTYRMMDQDSVKPDEITVAAVLSAC 408

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             LG       +H L IK  LI  V V N++++MYS    +D A+ IF  +  K+VISWT
Sbjct: 409 ATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWT 468

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++          +AL  FR+M+ + +  + + L   ++  A +G L  GK++HA V+  
Sbjct: 469 SIIAGLRLNNRCFEALIFFRQMKMT-LQPNAITLTAALAACARIGALMCGKEIHAHVLRT 527

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           G+  +  L N+++ MY +CG ++ + + FN   +K + SW  +++GY + G     +  F
Sbjct: 528 GVGLDDFLPNALLDMYVRCGRMNIAWNQFNS-QKKDVSSWNILLTGYSERGQGSVVVELF 586

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            +M + +    D IT +S+L   G+   +   L       E G         C++    +
Sbjct: 587 DRMVKARVRP-DEITFISLLCGCGKSQMVRQGLMYFSKMEEYGVTPNLKHYACVVDLLGR 645

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTII 427
            G +  A+   ++M    D   W  ++
Sbjct: 646 AGELQEAHKFIQKMPVTPDPAVWGALL 672


>gi|357521295|ref|XP_003630936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524958|gb|AET05412.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 959

 Score =  278 bits (710), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 179/618 (28%), Positives = 303/618 (49%), Gaps = 57/618 (9%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  S L+  Y  +G I +A+ LFDE+P ++ + W+++++GY  NG    ++  F  M
Sbjct: 210 MDLFIGSSLIKLYTDNGYIHDAKYLFDELPVRDCILWNVMLNGYVKNGDFNSALGTFQEM 269

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
             S + PNS + V +L   A    +     +HGL+++ G ESD                 
Sbjct: 270 RNSCVKPNSVSFVCLLSVCATRGIVRAGIQLHGLVIRSGFESDPTVANTIITMYSKCGNL 329

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +F+ +     V+ N ++AG++ N    +AV LF     SG+  +++T  + +   
Sbjct: 330 FDARKIFDIMPQTDTVTWNGLIAGYVQNGFTDEAVALFKAMVTSGVKLDSITFASFLPSV 389

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
           +  GS   C+ +H   ++ G+  DV + ++++D+Y    D++ A + F++    DV   T
Sbjct: 390 LKSGSLKYCKEVHSYIVRHGVPFDVYLKSALVDIYFKGGDVEMACKTFQQNTLVDVAVCT 449

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+  +V      +AL +FR + +  ++ + + + +++   A L  LK GK+LH  ++  
Sbjct: 450 AMISGYVLNGLNVEALNLFRWLIQEGMVPNCLTMASVLPACAALASLKLGKELHCDILKK 509

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           GL++  ++ +SI  MY+K G LD +   F ++  K  V W  +I  + QNG    A++ F
Sbjct: 510 GLENVCQVGSSITYMYAKSGRLDLAYQFFRRMPVKDSVCWNLMIVSFSQNGKPELAIDLF 569

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            +M    T   DS++L + L+A     AL    +LH       F     V + LI  YSK
Sbjct: 570 RQMGTSGT-KFDSVSLSATLSACANYPALYYGKELHCFVVRNSFISDTFVASTLIDMYSK 628

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CG + LA  VF+ M + ++ VSWN+II  YG +G     L L+H+M E G  PD  T+L 
Sbjct: 629 CGKLALARSVFDMMDW-KNEVSWNSIIAAYGNHGRPRECLDLFHEMVEAGIQPDHVTFLV 687

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           I++ACGHAGL ++G+  F  M EE  +    EH+ C+VDL  RAG L +A      +   
Sbjct: 688 IMSACGHAGLVDEGIYYFRCMTEEYGICARMEHFACMVDLYGRAGRLHEAFDTIKSMPFT 747

Query: 521 MGPNIWRALLSGCVLH---------------------------------VGRFQDAEALR 547
                W +LL  C LH                                  G ++    +R
Sbjct: 748 PDAGTWGSLLGACRLHGNVELAKLASKHLVELDPNNSGYYVLLSNVHAGAGEWESVLKVR 807

Query: 548 SGSQKKGIIKIPGISFLN 565
           S  ++KG+ KIPG S+++
Sbjct: 808 SLMKEKGVQKIPGYSWID 825



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 149/530 (28%), Positives = 257/530 (48%), Gaps = 37/530 (6%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           S++L  Y      K+  NLF  +     + W+ +I G+S+ G  + ++  F  M+ S + 
Sbjct: 115 SRMLGMYVLCRSFKDVGNLFCRLQLCYSLPWNWLIRGFSMLGCFDFALMFFFRMLGSNVA 174

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG-------LKNPYL------ 115
           P+ +T   V+ A  GL N+ L + +H L    G   DLF G         N Y+      
Sbjct: 175 PDKYTFPYVIKACGGLNNVPLCKMVHELARSMGFHMDLFIGSSLIKLYTDNGYIHDAKYL 234

Query: 116 ---------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG-S 165
                    +  N ++ G++ N  F  A+  F   R S + PN+V+ + ++  C   G  
Sbjct: 235 FDELPVRDCILWNVMLNGYVKNGDFNSALGTFQEMRNSCVKPNSVSFVCLLSVCATRGIV 294

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
           RA  +L HGL I+ G   D +V N+++ MYS   +L  A +IF  M   D ++W  ++  
Sbjct: 295 RAGIQL-HGLVIRSGFESDPTVANTIITMYSKCGNLFDARKIFDIMPQTDTVTWNGLIAG 353

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +V   +  +A+ +F+ M  S +  D++   + +      G LK  K++H+ +V  G+  +
Sbjct: 354 YVQNGFTDEAVALFKAMVTSGVKLDSITFASFLPSVLKSGSLKYCKEVHSYIVRHGVPFD 413

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           + L ++++ +Y K GD++ +   F Q T   +   TA+ISGYV NG   EALN F  + Q
Sbjct: 414 VYLKSALVDIYFKGGDVEMACKTFQQNTLVDVAVCTAMISGYVLNGLNVEALNLFRWLIQ 473

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
           E     + +T+ S+L A   LA+L++  +LH    + G      V + +   Y+K G +D
Sbjct: 474 EGMVP-NCLTMASVLPACAALASLKLGKELHCDILKKGLENVCQVGSSITYMYAKSGRLD 532

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
           LAY  F  M  ++D V WN +I  +  NG  E A+ L+ +M  +G   DS +  + L+AC
Sbjct: 533 LAYQFFRRMP-VKDSVCWNLMIVSFSQNGKPELAIDLFRQMGTSGTKFDSVSLSATLSAC 591

Query: 466 G-----HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
                 + G      V+ N  I +  V  +      ++D+ ++ G L+ A
Sbjct: 592 ANYPALYYGKELHCFVVRNSFISDTFVAST------LIDMYSKCGKLALA 635


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  277 bits (709), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 186/613 (30%), Positives = 310/613 (50%), Gaps = 66/613 (10%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS-G 66
           S+KL++ Y   G +  A   FD I  ++V +W+++I GY   G+  + ++ FS  MLS G
Sbjct: 89  SAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISGYGRAGYSSEVIRCFSLFMLSSG 148

Query: 67  LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--------------------- 105
           L P+  T   VL A    +N+     IH L +KFG   D                     
Sbjct: 149 LQPDYRTFPSVLKAC---RNVTDGNKIHCLALKFGFMWDVYVAASLIHLYCRYGAVVNAR 205

Query: 106 -LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
            LF+ +    + S NA+++G+  +   ++A+ L +  R      ++VT+++++  C   G
Sbjct: 206 ILFDEMPTRDMGSWNAMISGYCQSGNAKEALTLSDGLRAM----DSVTVVSLLSACTEAG 261

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
                  IH  +IK GL  ++ V+N ++D+Y+    L    ++F  M  +D+ISW  ++ 
Sbjct: 262 DFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIK 321

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG-LQ 283
            +   E    A+ +F+EMR SRI  D + L++L S+ + LG+++  + +    +  G   
Sbjct: 322 AYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRKGWFL 381

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
            ++ + N+++ MY+K G +DS+R+VFN +  K ++SW  IISGY QNG A EA+  +  M
Sbjct: 382 EDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIM 441

Query: 344 RQEKTD-SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
            +E  + S +  T VS+L A  +  AL   ++LHG   + G      V   L   Y KCG
Sbjct: 442 EEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVGTSLADMYGKCG 501

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
            +D A  +F ++  + + V WNT+I  +G +GHGE A+ L+ +M + G  PD  T++++L
Sbjct: 502 RLDDALSLFYQIPRV-NSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLL 560

Query: 463 NACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMG 522
           +AC H+GL ++G   F  M  +  + PS +HYGC+VDL  RAG L  A      +     
Sbjct: 561 SACSHSGLVDEGEWCFEMMQTDYGITPSLKHYGCMVDLYGRAGQLEIALNFIKSMPLQPD 620

Query: 523 PNIWRALLSGCVLH---------------------------------VGRFQDAEALRSG 549
            +IW ALLS C +H                                  G+++  + +RS 
Sbjct: 621 ASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSI 680

Query: 550 SQKKGIIKIPGIS 562
           +  KG+ K PG S
Sbjct: 681 TSGKGLRKTPGWS 693



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 120/460 (26%), Positives = 228/460 (49%), Gaps = 35/460 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y ++ L+  Y + G +  A  LFDE+P +++ SW+ +I GY  +G  ++++      +
Sbjct: 184 DVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEALT-----L 238

Query: 64  LSGLLP-NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY------ 114
             GL   +S T+V +L A     +     +IH   +K GLES+LF    L + Y      
Sbjct: 239 SDGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSL 298

Query: 115 --------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                         L+S N+I+  +  N+   +A+LLF   R S + P+ +T++++    
Sbjct: 299 KDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASIL 358

Query: 161 VALGSRALCELIHGLTIKLGLIL-DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
             LG    C  + G T++ G  L D+++ N+V+ MY+ L  +D+A  +F  +  KDVISW
Sbjct: 359 SQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISW 418

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKS--RIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
             ++  +    +A +A++++  M +    I  +    ++++   +  G L++G +LH ++
Sbjct: 419 NTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRL 478

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           +  GL  ++ +  S+  MY KCG LD + S+F QI   + V W  +I+ +  +G   +A+
Sbjct: 479 LKNGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAV 538

Query: 338 NQFIKMRQE--KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLI 395
             F +M  E  K D +  +TL+S  + SG +   E C ++  +  + G         C++
Sbjct: 539 MLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGEWCFEM--MQTDYGITPSLKHYGCMV 596

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGH 435
             Y + G +++A    + M    D   W  ++    V+G+
Sbjct: 597 DLYGRAGQLEIALNFIKSMPLQPDASIWGALLSACRVHGN 636



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 158/308 (51%), Gaps = 13/308 (4%)

Query: 155 TVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
           T+ R C  L S A C  +H   +    I +V ++  ++++Y  L ++  A   F  +  +
Sbjct: 59  TLFRYCTNLQS-AKC--LHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNR 115

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFR-EMRKSRIICDTVALLNLISVNAILGDLKRGKQL 273
           DV +W  M+  +    Y+ + ++ F   M  S +  D     +++     + D   G ++
Sbjct: 116 DVYAWNLMISGYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRNVTD---GNKI 172

Query: 274 HAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA 333
           H   +  G   ++ ++ S+I +Y + G + ++R +F+++  + + SW A+ISGY Q+G A
Sbjct: 173 HCLALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNA 232

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC 393
           +EAL     +R     ++DS+T+VS+L+A  E       + +H  + + G      V N 
Sbjct: 233 KEALTLSDGLR-----AMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNK 287

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           LI  Y++ G++     VF+ M ++RD++SWN+II  Y +N     A+ L+ +M  +   P
Sbjct: 288 LIDLYAEFGSLKDCQKVFDRM-YVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQP 346

Query: 454 DSSTYLSI 461
           D  T +S+
Sbjct: 347 DCLTLISL 354



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 141/294 (47%), Gaps = 22/294 (7%)

Query: 228 DFEYAGDALK-IFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
           +F  + +AL+  ++   +S+ I D   L    +      +L+  K LHA++V+      +
Sbjct: 33  EFSASANALQDCWKNGNESKEIDDVHTLFRYCT------NLQSAKCLHARLVVSNAIQNV 86

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            +S  ++ +Y   G++  +R  F+ I  + + +W  +ISGY + G + E +  F      
Sbjct: 87  CISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISGYGRAGYSSEVIRCFSLFMLS 146

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
                D  T  S+L A   +       ++H +A + GF     V   LI  Y + G V  
Sbjct: 147 SGLQPDYRTFPSVLKACRNVTDGN---KIHCLALKFGFMWDVYVAASLIHLYCRYGAVVN 203

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           A I+F+EM   RD+ SWN +I GY  +G+ + AL L    ++     DS T +S+L+AC 
Sbjct: 204 ARILFDEMP-TRDMGSWNAMISGYCQSGNAKEALTL----SDGLRAMDSVTVVSLLSACT 258

Query: 467 HAGLTNDGLVIFNQMIE---ENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL 517
            AG  N G+ I +  I+   E+++  S +    ++DL A  G L D   +  ++
Sbjct: 259 EAGDFNRGVTIHSYSIKHGLESELFVSNK----LIDLYAEFGSLKDCQKVFDRM 308



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 44/80 (55%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  + L   Y K G++ +A +LF +IP  N V W+ +I  +  +G  EK++  F  M
Sbjct: 485 LDVFVGTSLADMYGKCGRLDDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEM 544

Query: 63  MLSGLLPNSFTMVGVLVAAA 82
           +  G+ P+  T V +L A +
Sbjct: 545 LDEGVKPDHITFVTLLSACS 564


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  277 bits (709), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 167/562 (29%), Positives = 272/562 (48%), Gaps = 28/562 (4%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  +  +++ ++S + K+G +  A +LFD +P++ VV+W+I++  Y+ N   +++ K F 
Sbjct: 75  PHKNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFR 134

Query: 61  HMMLSG--LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------- 105
            M  S    LP+  T   +L              +H   VK G +++             
Sbjct: 135 QMCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSY 194

Query: 106 -----------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTML 154
                      LFE +     V+ N ++ G+  + L+ +++ LF   R SG  P+  T  
Sbjct: 195 CEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFS 254

Query: 155 TVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
            V++  V L   AL + +H L++  G   D SV N +LD YS    +     +F EM   
Sbjct: 255 GVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPEL 314

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
           D +S+  ++  +   +    +L  FREM+             ++S+ A L  L+ G+QLH
Sbjct: 315 DFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLH 374

Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
            Q +L    S L + NS++ MY+KC   + +  +F  + +++ VSWTA+ISGYVQ G   
Sbjct: 375 CQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHG 434

Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
             L  F KMR       D  T  ++L AS   A+L +  QLH     +G        + L
Sbjct: 435 AGLKLFTKMRGSNL-RADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGL 493

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           +  Y+KCG++  A  VFEEM   R+ VSWN +I  +  NG GE A+  + KM E+G  PD
Sbjct: 494 VDMYAKCGSIKDAVQVFEEMP-DRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPD 552

Query: 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLA 514
           S + L +L AC H G    G   F  M     + P ++HY C++DLL R G  ++A  L 
Sbjct: 553 SVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLM 612

Query: 515 GKLLEGMGPNIWRALLSGCVLH 536
            ++       +W ++L+ C +H
Sbjct: 613 DEMPFEPDEIMWSSVLNACRIH 634



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 123/489 (25%), Positives = 223/489 (45%), Gaps = 32/489 (6%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ LL +Y +  ++  A  LF+EIPEK+ V+++ +I GY  +G + +S+  F  M  SG 
Sbjct: 187 SNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGH 246

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
            P+ FT  GVL A  GL +  L + +H L V  G   D                      
Sbjct: 247 QPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRM 306

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           LF+ +     VS N +++ +     ++ ++  F   +  G         T++     L S
Sbjct: 307 LFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSS 366

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
             +   +H   +       + V NS++DMY+     + A  IF+ +  +  +SWT ++  
Sbjct: 367 LQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISG 426

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +V     G  LK+F +MR S +  D      ++  +A    L  GKQLHA ++  G    
Sbjct: 427 YVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLEN 486

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           +   + ++ MY+KCG +  +  VF ++ +++ VSW A+IS +  NG    A+  F KM +
Sbjct: 487 VFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIE 546

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRY-----RSVQNCLISSYSK 400
                 DS++++ +LTA      +E   +     F+A  P Y     +    C++    +
Sbjct: 547 SGLQP-DSVSILGVLTACSHCGFVEQGTEY----FQAMSPIYGITPKKKHYACMLDLLGR 601

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
            G    A  + +EM F  D + W++++    ++ +   A     K+    ++ D++ Y+S
Sbjct: 602 NGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVS 661

Query: 461 ILNACGHAG 469
           + N    AG
Sbjct: 662 MSNIYAAAG 670


>gi|6016735|gb|AAF01561.1|AC009325_31 hypothetical protein [Arabidopsis thaliana]
          Length = 641

 Score =  277 bits (709), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 170/550 (30%), Positives = 286/550 (52%), Gaps = 36/550 (6%)

Query: 31  IPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELA 90
           + ++++  W+ ++   S     E+ +  FSHM      P++FT+   L A   L+ +   
Sbjct: 1   MTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKACGELREVNYG 60

Query: 91  RSIHGLMVK-FGLESDL----------------------FEGLKNPYLVSCNAIVAGFIN 127
             IHG + K   L SDL                      F+ L+ P +V+ +++V+GF  
Sbjct: 61  EMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKPDIVTWSSMVSGFEK 120

Query: 128 NKLFQQAVLLFNFFR----GSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLIL 183
           N    QAV    FFR     S + P+ VT++T++  C  L +  L   +HG  I+ G   
Sbjct: 121 NGSPYQAV---EFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVIRRGFSN 177

Query: 184 DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMR 243
           D+S+ NS+L+ Y+       A+ +F+ +  KDVISW+ ++  +V    A +AL +F +M 
Sbjct: 178 DLSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAAAEALLVFNDMM 237

Query: 244 KSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLD 303
                 +   +L ++   A   DL++G++ H   +  GL++E+++S +++ MY KC   +
Sbjct: 238 DDGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKCFSPE 297

Query: 304 SSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTAS 363
            + +VF++I  K +VSW A+ISG+  NG A  ++ +F  M  E     D+I +V +L + 
Sbjct: 298 EAYAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMVKVLGSC 357

Query: 364 GELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSW 423
            EL  LE     H    + GF     +   L+  YS+CG++  A  VF  +  L+D V W
Sbjct: 358 SELGFLEQAKCFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIA-LKDTVVW 416

Query: 424 NTIIYGYGVNGHGETALALYHKMTETGEV-PDSSTYLSILNACGHAGLTNDGLVIFNQMI 482
            ++I GYG++G G  AL  ++ M ++ EV P+  T+LSIL+AC HAGL ++GL IF  M+
Sbjct: 417 TSLITGYGIHGKGTKALETFNHMVKSSEVKPNEVTFLSILSACSHAGLIHEGLRIFKLMV 476

Query: 483 EENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQD 542
            + ++ P+ EHY  +VDLL R G L  A  +  ++     P I   LL  C +H    Q+
Sbjct: 477 NDYRLAPNLEHYAVLVDLLGRVGDLDTAIEITKRMPFSPTPQILGTLLGACRIH----QN 532

Query: 543 AEALRSGSQK 552
            E   + ++K
Sbjct: 533 GEMAETVAKK 542



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 129/495 (26%), Positives = 235/495 (47%), Gaps = 34/495 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM- 62
           D Y  S L+  Y K G++ EA  +FDE+ + ++V+WS ++ G+  NG   ++++ F  M 
Sbjct: 76  DLYVGSSLIYMYIKCGRMIEALRMFDELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMV 135

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
           M S + P+  T++ ++ A   L N  L R +HG +++ G  +D                 
Sbjct: 136 MASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVIRRGFSNDLSLVNSLLNCYAKSRAF 195

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                LF+ +    ++S + ++A ++ N    +A+L+FN     G  PN  T+L V++ C
Sbjct: 196 KEAVNLFKMIAEKDVISWSTVIACYVQNGAAAEALLVFNDMMDDGTEPNVATVLCVLQAC 255

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
            A          H L I+ GL  +V V+ +++DMY      + A  +F  +  KDV+SW 
Sbjct: 256 AAAHDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPRKDVVSWV 315

Query: 221 RMMGLFVDFEYAGDALKIFREM-RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
            ++  F     A  +++ F  M  ++    D + ++ ++   + LG L++ K  H+ V+ 
Sbjct: 316 ALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMVKVLGSCSELGFLEQAKCFHSYVIK 375

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G  S   +  S++ +YS+CG L ++  VFN I  K  V WT++I+GY  +G   +AL  
Sbjct: 376 YGFDSNPFIGASLVELYSRCGSLGNASKVFNGIALKDTVVWTSLITGYGIHGKGTKALET 435

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN-----CL 394
           F  M +      + +T +SIL+A      +   L++    F+     YR   N      L
Sbjct: 436 FNHMVKSSEVKPNEVTFLSILSACSHAGLIHEGLRI----FKLMVNDYRLAPNLEHYAVL 491

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           +    + G++D A  + + M F        T++    ++ +GE A  +  K+ E  E   
Sbjct: 492 VDLLGRVGDLDTAIEITKRMPFSPTPQILGTLLGACRIHQNGEMAETVAKKLFEL-ESNH 550

Query: 455 SSTYLSILNACGHAG 469
           +  Y+ + N  G  G
Sbjct: 551 AGYYMLMSNVYGVKG 565


>gi|297807343|ref|XP_002871555.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317392|gb|EFH47814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 822

 Score =  277 bits (709), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 177/579 (30%), Positives = 297/579 (51%), Gaps = 34/579 (5%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C+D + ++ LL+ Y K+G  K+A NLFDE+PE+N VS+  +  GY+     +  +  +S 
Sbjct: 81  CLDLFATNILLNAYVKAGFDKDALNLFDEMPERNNVSYVTLTQGYAC----QDPVGLYSR 136

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------- 105
           +   G   N       L     L   E+   +H  +VK G +S+                
Sbjct: 137 LHREGHELNPHVFTSFLKLFVSLDKAEICWWLHSPIVKLGYDSNAFVGAALINAYSVCGS 196

Query: 106 ------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                 +FEG+    +V    IV+ ++ N  F+ ++ L +     G +PN  T  T ++ 
Sbjct: 197 VDSARSVFEGILCKDIVVWAGIVSCYVENGCFEDSLQLLSRMGMDGFMPNNYTFDTALKA 256

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
            + LG+    + +HG  +K    LD  V   +L +Y+ L D+  A ++F EM   DV+ W
Sbjct: 257 SIGLGAFHFAKSVHGQILKTCYELDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPW 316

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           + M+  F    +   A+ IF  MR+  ++ +   L ++++  AI      G+QLH  VV 
Sbjct: 317 SFMIARFCQNGFCNKAVDIFIRMREGFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVK 376

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G   ++ +SN++I +Y+KC  +D++  +F +++ K++VSW  +I GY   G   +ALN 
Sbjct: 377 VGFDLDVYVSNALIDVYAKCEKMDTAVKLFAELSSKNVVSWNTVIVGYENLGEGGKALNM 436

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           F +  + +  SV  +T  S L A   LA++E+ +Q+HG+A +    +  +V N LI  Y+
Sbjct: 437 FREALRNQV-SVTEVTFSSALGACASLASMELGVQVHGLAIKTNNAKRVAVSNSLIDMYA 495

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           KCG++ +A  VF EM  + DV SWN +I GY  +G G  AL ++  M  +   P+  T+L
Sbjct: 496 KCGDIKVAQTVFNEMETI-DVASWNALISGYSTHGLGRQALRIFDIMKGSDCKPNGLTFL 554

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519
            +L+ C +AGL + G   F  MI ++ ++P  EHY C+V L  R+G L  A  L   +  
Sbjct: 555 GVLSGCSNAGLIDQGQDCFESMICDHGIEPCLEHYTCMVRLFGRSGQLDKAMNLIEGIPY 614

Query: 520 GMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIKI 558
                IWRA+LS     + ++ +  A RS  +   I+KI
Sbjct: 615 EPSVMIWRAMLSA---SMNQYNEEFARRSAEE---ILKI 647



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 125/472 (26%), Positives = 218/472 (46%), Gaps = 17/472 (3%)

Query: 98  VKFGLESD---LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTML 154
           VK G + D   LF+ +     VS   +  G+      Q  V L++     G   N     
Sbjct: 95  VKAGFDKDALNLFDEMPERNNVSYVTLTQGYA----CQDPVGLYSRLHREGHELNPHVFT 150

Query: 155 TVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
           + ++  V+L    +C  +H   +KLG   +  V  ++++ YS    +D+A  +F  + CK
Sbjct: 151 SFLKLFVSLDKAEICWWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARSVFEGILCK 210

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
           D++ W  ++  +V+     D+L++   M     + +       +  +  LG     K +H
Sbjct: 211 DIVVWAGIVSCYVENGCFEDSLQLLSRMGMDGFMPNNYTFDTALKASIGLGAFHFAKSVH 270

Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
            Q++    + + R+   ++ +Y++ GD+  +  VFN++ +  +V W+ +I+ + QNG   
Sbjct: 271 GQILKTCYELDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCN 330

Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
           +A++ FI+MR E     +  TL SIL          +  QLHG+  + GF     V N L
Sbjct: 331 KAVDIFIRMR-EGFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDVYVSNAL 389

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           I  Y+KC  +D A  +F E+   ++VVSWNT+I GY   G G  AL ++ +         
Sbjct: 390 IDVYAKCEKMDTAVKLFAELSS-KNVVSWNTVIVGYENLGEGGKALNMFREALRNQVSVT 448

Query: 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLA 514
             T+ S L AC        G+ +    I+ N  K        ++D+ A+ G +  A  + 
Sbjct: 449 EVTFSSALGACASLASMELGVQVHGLAIKTNNAKRVAVS-NSLIDMYAKCGDIKVAQTVF 507

Query: 515 GKLLEGMGPNIWRALLSGCVLH-VGRFQDAEALRSGSQKKGIIKIP-GISFL 564
            + +E +    W AL+SG   H +GR    +ALR     KG    P G++FL
Sbjct: 508 NE-METIDVASWNALISGYSTHGLGR----QALRIFDIMKGSDCKPNGLTFL 554



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 145/313 (46%), Gaps = 8/313 (2%)

Query: 155 TVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMY-SCLMDLDAAIQIFREMEC 213
           T++R C+        + IH   +K G  LD+   N +L+ Y     D D A+ +F EM  
Sbjct: 54  TMLRRCIRKNDSVSAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKD-ALNLFDEMPE 112

Query: 214 KDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQL 273
           ++ +S+  +   +       D + ++  + +     +     + + +   L   +    L
Sbjct: 113 RNNVSYVTLTQGYA----CQDPVGLYSRLHREGHELNPHVFTSFLKLFVSLDKAEICWWL 168

Query: 274 HAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA 333
           H+ +V  G  S   +  ++I  YS CG +DS+RSVF  I  K +V W  I+S YV+NGC 
Sbjct: 169 HSPIVKLGYDSNAFVGAALINAYSVCGSVDSARSVFEGILCKDIVVWAGIVSCYVENGCF 228

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC 393
            ++L    +M  +     ++ T  + L AS  L A      +HG   +  +     V   
Sbjct: 229 EDSLQLLSRMGMDGF-MPNNYTFDTALKASIGLGAFHFAKSVHGQILKTCYELDPRVGVG 287

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           L+  Y++ G++  A+ VF EM    DVV W+ +I  +  NG    A+ ++ +M E   VP
Sbjct: 288 LLQLYTQLGDMSDAFKVFNEMP-KNDVVPWSFMIARFCQNGFCNKAVDIFIRMREGFVVP 346

Query: 454 DSSTYLSILNACG 466
           +  T  SILN C 
Sbjct: 347 NEFTLSSILNGCA 359


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  277 bits (709), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 176/610 (28%), Positives = 300/610 (49%), Gaps = 57/610 (9%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           LL  Y   G + EA  LFD+   K+VVSW+++I GY+  G  +++   F+ M   GL P+
Sbjct: 85  LLKLYVHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPD 144

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFE 108
            FT V +L A +    L   R +H  +++ GL ++                      +F+
Sbjct: 145 KFTFVSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFD 204

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            + +   VS   +   +  +   Q+++  ++     G+ P+ +T + V+  C +L +   
Sbjct: 205 AMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEK 264

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
            + IH   ++     DV V+ ++  MY     +  A ++F  +  +DVI+W  M+G  VD
Sbjct: 265 GKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVD 324

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
                +A  +F  M K  +  D V  L ++S  A  G L  GK++HA+ V  GL S++R 
Sbjct: 325 SGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRF 384

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
            N++I MYSK G +  +R VF+++ ++ +VSWTA++ GY   G   E+ + F KM Q+  
Sbjct: 385 GNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGV 444

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
           ++ + IT + +L A     AL+   ++H    +AG     +V N L+S Y KCG+V+ A 
Sbjct: 445 EA-NKITYMCVLKACSNPVALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAI 503

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
            V E M   RDVV+WNT+I G   NG G  AL  +  M      P+++T++++++AC   
Sbjct: 504 RVSEGMS-TRDVVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSACRVR 562

Query: 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRA 528
            L  +G   F  M ++  + P+++HY C+VD+LARAG L +A  +   +       +W A
Sbjct: 563 NLVEEGRRQFASMRKDYGIVPTEKHYACMVDILARAGHLGEAEDVILTMPFKPSAAMWGA 622

Query: 529 LLSGCVLH---------------------------------VGRFQDAEALRSGSQKKGI 555
           LL+ C  H                                  G ++D   LR   +++G+
Sbjct: 623 LLAACRAHGNVEIGEQAAEQCLKLEPQNAGTYVSLSFIYAAAGMWRDVAKLRKLMKERGV 682

Query: 556 IKIPGISFLN 565
            K PG S++ 
Sbjct: 683 KKEPGRSWIE 692



 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 116/441 (26%), Positives = 220/441 (49%), Gaps = 25/441 (5%)

Query: 47  SINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD- 105
           S +G++  +     ++   G   +S+  V +L +    ++L + + +H  +++FG++ + 
Sbjct: 21  STDGWYAPA-DVLQYLHQKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNV 79

Query: 106 ---------------------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGS 144
                                LF+   N  +VS N +++G+ +  L Q+A  LF   +  
Sbjct: 80  YIINTLLKLYVHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQE 139

Query: 145 GLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAA 204
           GL P+  T ++++  C +  +      +H   ++ GL  + +V N+++ MY+    +  A
Sbjct: 140 GLEPDKFTFVSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDA 199

Query: 205 IQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAIL 264
            ++F  M  +D +SWT + G + +  YA ++LK +  M +  +    +  +N++S    L
Sbjct: 200 RRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSL 259

Query: 265 GDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAII 324
             L++GKQ+HAQ+V     S++R+S ++  MY KCG +  +R VF  +  + +++W  +I
Sbjct: 260 AALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMI 319

Query: 325 SGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGF 384
            G V +G   EA   F +M +E   + D +T ++IL+A      L    ++H  A + G 
Sbjct: 320 GGLVDSGQLEEAHGMFHRMLKECV-APDRVTYLAILSACARPGGLACGKEIHARAVKDGL 378

Query: 385 PRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH 444
                  N LI+ YSK G++  A  VF+ M   RDVVSW  ++ GY   G    + + + 
Sbjct: 379 VSDVRFGNALINMYSKAGSMKDARQVFDRMP-KRDVVSWTALVGGYADCGQVVESFSTFK 437

Query: 445 KMTETGEVPDSSTYLSILNAC 465
           KM + G   +  TY+ +L AC
Sbjct: 438 KMLQQGVEANKITYMCVLKAC 458



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 110/397 (27%), Positives = 203/397 (51%), Gaps = 6/397 (1%)

Query: 137 LFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYS 196
           +  +    G   ++   + +++ CV     A+ + +H   ++ G+  +V + N++L +Y 
Sbjct: 31  VLQYLHQKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYV 90

Query: 197 CLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLN 256
               ++ A ++F +   K V+SW  M+  +       +A  +F  M++  +  D    ++
Sbjct: 91  HCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVS 150

Query: 257 LISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKS 316
           ++S  +    L  G+++H +V+  GL +   + N++I+MY+KCG +  +R VF+ +  + 
Sbjct: 151 ILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRD 210

Query: 317 LVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLH 376
            VSWT +   Y ++G A+E+L  +  M QE       IT +++L+A G LAALE   Q+H
Sbjct: 211 EVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRP-SRITYMNVLSACGSLAALEKGKQIH 269

Query: 377 GIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHG 436
               E+       V   L   Y KCG V  A  VFE +   RDV++WNT+I G   +G  
Sbjct: 270 AQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPN-RDVIAWNTMIGGLVDSGQL 328

Query: 437 ETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYG- 495
           E A  ++H+M +    PD  TYL+IL+AC   G    G  I  + +++  V  S   +G 
Sbjct: 329 EEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLV--SDVRFGN 386

Query: 496 CVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSG 532
            ++++ ++AG + DA  +  ++ +      W AL+ G
Sbjct: 387 ALINMYSKAGSMKDARQVFDRMPK-RDVVSWTALVGG 422


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  277 bits (708), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 167/548 (30%), Positives = 287/548 (52%), Gaps = 28/548 (5%)

Query: 27  LFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQN 86
           +FDE+PE+N VS+  +IHGY+ +    ++ + F+ +   G   N F    VL     ++ 
Sbjct: 2   VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSMEW 61

Query: 87  LELARSIHGLMVKFG----------------------LESDLFEGLKNPYLVSCNAIVAG 124
            EL R +HG ++K G                      +  ++F+ + +  +VS   ++A 
Sbjct: 62  AELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIAS 121

Query: 125 FINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILD 184
           +  N  F +A+  F+  R +G  PN  T   V++ C+ L +    + +H   +K     D
Sbjct: 122 YAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERD 181

Query: 185 VSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRK 244
           + V   +L++Y+   D D A + F +M   DVI W+ M+  F     +  AL+IF +MR+
Sbjct: 182 LYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRR 241

Query: 245 SRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDS 304
           + +I +     +++  +A +  L   K +H   +  GL +++ +SN+++A Y+KCG ++ 
Sbjct: 242 AFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQ 301

Query: 305 SRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASG 364
           S  +F  +++++ VSW  II  YVQ G    AL+ F  M + +  + + +T  SIL A  
Sbjct: 302 SMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATE-VTYSSILRACA 360

Query: 365 ELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWN 424
            LAALE+ LQ+H +  +  + +  +V N LI  Y+KCG++  A  +F+ +  LRD VSWN
Sbjct: 361 TLAALELGLQVHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDMLD-LRDKVSWN 419

Query: 425 TIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEE 484
            II GY ++G G  A+ +++ M ET   PD  T++ +L+AC + G  ++G   F  M ++
Sbjct: 420 AIICGYSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQD 479

Query: 485 NKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAE 544
             ++P  EHY C+V L+ R+G L  A      +       IWRALL  CV+H     D E
Sbjct: 480 YGIEPCMEHYTCMVWLMGRSGNLDQAVKFIEDIPFEPSVMIWRALLGACVIH----NDVE 535

Query: 545 ALRSGSQK 552
             R  +Q+
Sbjct: 536 LGRISAQR 543



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 116/443 (26%), Positives = 218/443 (49%), Gaps = 26/443 (5%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + L+  Y  SG +  A  +FDEI  K++VSW+ +I  Y+ N    ++++ FS M ++G  
Sbjct: 85  TALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIASYAENDCFSEALEFFSQMRVAGFK 144

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGL------------------ 110
           PN+FT  GVL A  GLQN +  +++H  ++K   E DL+ G+                  
Sbjct: 145 PNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWRA 204

Query: 111 -----KNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
                KN  ++  + +++ F  +   ++A+ +F   R + ++PN  T  +V++    + S
Sbjct: 205 FGDMPKND-VIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASADIES 263

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
             L + IHG  +K GL  DV V+N+++  Y+    ++ ++++F  +  ++ +SW  ++  
Sbjct: 264 LDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVS 323

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +V       AL +F  M + ++    V   +++   A L  L+ G Q+H          +
Sbjct: 324 YVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATLAALELGLQVHCLTAKTIYGQD 383

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           + + N++I MY+KCG +  +R +F+ +  +  VSW AII GY  +G   EA+  F  M++
Sbjct: 384 VAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKE 443

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQ-LHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
            K    D +T V +L+A      L+   Q    +  + G         C++    + GN+
Sbjct: 444 TKCKP-DELTFVGVLSACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMVWLMGRSGNL 502

Query: 405 DLAYIVFEEMGFLRDVVSWNTII 427
           D A    E++ F   V+ W  ++
Sbjct: 503 DQAVKFIEDIPFEPSVMIWRALL 525



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 103/434 (23%), Positives = 199/434 (45%), Gaps = 28/434 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y    LL  Y + G   +A   F ++P+ +V+ WS +I  ++ +G  EK+++ F  M 
Sbjct: 181 DLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMR 240

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
            + ++PN FT   VL A+A +++L+L+++IHG  +K GL +D                  
Sbjct: 241 RAFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIE 300

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               LFE L +   VS N I+  ++     ++A+ LF+      +    VT  +++R C 
Sbjct: 301 QSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACA 360

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            L +  L   +H LT K     DV+V N+++DMY+    +  A  +F  ++ +D +SW  
Sbjct: 361 TLAALELGLQVHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNA 420

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG- 280
           ++  +       +A+K+F  M++++   D +  + ++S  +  G L  GKQ    +    
Sbjct: 421 IICGYSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDY 480

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISGYV-QNGCAREALN 338
           G++  +     ++ +  + G+LD +      I  E S++ W A++   V  N      ++
Sbjct: 481 GIEPCMEHYTCMVWLMGRSGNLDQAVKFIEDIPFEPSVMIWRALLGACVIHNDVELGRIS 540

Query: 339 QFIKMRQEKTDSVDSITLVSILTAS---GELAALEICLQLHGIAFEAGFPRYRSVQNCLI 395
               +  E  D    + L +I   +   G +A +   ++  G+  E G     +  N   
Sbjct: 541 AQRVLELEPRDEASHVLLSNIYARARRWGNVAYVRKHMKRKGVKKEPGLSWIENQGNVHC 600

Query: 396 SSYSKCGNVDLAYI 409
            + +   + DL  I
Sbjct: 601 FTVADTSHADLKLI 614


>gi|147771209|emb|CAN67545.1| hypothetical protein VITISV_030949 [Vitis vinifera]
          Length = 598

 Score =  277 bits (708), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 175/538 (32%), Positives = 280/538 (52%), Gaps = 37/538 (6%)

Query: 44  HGYSINGFHEKSM-KAFS-HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG 101
           H    N FH  S  KA   +   +  L + F    ++ A   L  +   RSIH  +++FG
Sbjct: 11  HASDANPFHAISFFKAIPRNQRENAPLDDHFVYASLIKACNRLSAIREGRSIHCHVLRFG 70

Query: 102 LESD-----------------------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLF 138
           L+ +                       LF+ +    +V+ N +++GF+ NK F   V LF
Sbjct: 71  LDYNVNVLNALVYLYSSAEKSMGCACALFDKIPEKTIVTVNCMISGFVKNKRFHAGVGLF 130

Query: 139 NFFRGSG----LVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDM 194
           N   G G    + PN VT++ +I GCV  G  ++   +H    K  L L   V N+++ +
Sbjct: 131 NRVLGGGFDLRVKPNYVTLVILISGCVEFGRFSIGNSLHSYCCKTSLDLKNEVRNALIHL 190

Query: 195 YSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVAL 254
           Y+    +DAA ++F E   +D++SW  M+  +       +A  +FREMR   + CD V+L
Sbjct: 191 YAEFEYMDAAAKLFHETNVRDLVSWNTMIAGYAKNNDCRNAFSLFREMRIGNVECDRVSL 250

Query: 255 LNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE 314
           ++LIS      DL  GK +HA + + G++  +    ++I MYSKCG ++  R VF+++ +
Sbjct: 251 VSLISACTNXRDLHMGKAVHAFIKVSGMEMMIHFETALINMYSKCGSIELGRKVFDELAD 310

Query: 315 KSLVSWTAIISGYVQNGCAREALNQF--IKMRQEKTDSVDSITLVSILTASGEL-AALEI 371
           +++ SW ++I GYV+ G   EAL+ +  I+ R+ K D V  + L+S   +SG+L   ++I
Sbjct: 311 ENIASWNSMIYGYVECGFNIEALSLWNVIQSRKIKPDEVTMLGLISACRSSGDLHQGIQI 370

Query: 372 CLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYG 431
              +      +G      + N LI  Y+KCG++D A  VF +M   RDV+SW +II GY 
Sbjct: 371 NSYIESSDHLSGST---VLCNALIDMYAKCGSMDRAETVFSKMP-RRDVISWTSIIVGYA 426

Query: 432 VNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQ 491
           +NG GE AL  + KM      P+S T+L +L+AC HAGL + G  +++ M +   ++P  
Sbjct: 427 INGEGEEALLAFRKMGAEKIEPNSVTFLGVLSACDHAGLVDKGKNLYDIMCKYYHIEPKI 486

Query: 492 EHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSG 549
           EH GC+VD+ ARAG L +A      +       +WR L++ C +H G F     L SG
Sbjct: 487 EHCGCMVDMHARAGMLEEAYKFVKDMPVEPNAVVWRMLINACRVH-GDFNLGLNLVSG 543



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 118/495 (23%), Positives = 226/495 (45%), Gaps = 39/495 (7%)

Query: 27  LFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSG----LLPNSFTMVGVLVAAA 82
           LFD+IPEK +V+ + +I G+  N      +  F+ ++  G    + PN  T+V ++    
Sbjct: 98  LFDKIPEKTIVTVNCMISGFVKNKRFHAGVGLFNRVLGGGFDLRVKPNYVTLVILISGCV 157

Query: 83  GLQNLELARSIHGLMVKFGLE----------------------SDLFEGLKNPYLVSCNA 120
                 +  S+H    K  L+                      + LF       LVS N 
Sbjct: 158 EFGRFSIGNSLHSYCCKTSLDLKNEVRNALIHLYAEFEYMDAAAKLFHETNVRDLVSWNT 217

Query: 121 IVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLG 180
           ++AG+  N   + A  LF   R   +  + V+++++I  C       + + +H      G
Sbjct: 218 MIAGYAKNNDCRNAFSLFREMRIGNVECDRVSLVSLISACTNXRDLHMGKAVHAFIKVSG 277

Query: 181 LILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFR 240
           + + +    ++++MYS    ++   ++F E+  +++ SW  M+  +V+  +  +AL ++ 
Sbjct: 278 MEMMIHFETALINMYSKCGSIELGRKVFDELADENIASWNSMIYGYVECGFNIEALSLWN 337

Query: 241 EMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG-LQSELRLSNSIIAMYSKC 299
            ++  +I  D V +L LIS     GDL +G Q+++ +     L     L N++I MY+KC
Sbjct: 338 VIQSRKIKPDEVTMLGLISACRSSGDLHQGIQINSYIESSDHLSGSTVLCNALIDMYAKC 397

Query: 300 GDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSI 359
           G +D + +VF+++  + ++SWT+II GY  NG   EAL  F KM  EK +  +S+T + +
Sbjct: 398 GSMDRAETVFSKMPRRDVISWTSIIVGYAINGEGEEALLAFRKMGAEKIEP-NSVTFLGV 456

Query: 360 LTASGELAALEICLQLHGIAFEAGFPRYRSVQ------NCLISSYSKCGNVDLAYIVFEE 413
           L+A      ++    L+ I       +Y  ++       C++  +++ G ++ AY   ++
Sbjct: 457 LSACDHAGLVDKGKNLYDI-----MCKYYHIEPKIEHCGCMVDMHARAGMLEEAYKFVKD 511

Query: 414 MGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTND 473
           M    + V W  +I    V+G     L L   + +         ++   N    AG  +D
Sbjct: 512 MPVEPNAVVWRMLINACRVHGDFNLGLNLVSGLIDVKTEHGPEDHVISSNIFAEAGRWDD 571

Query: 474 GLVIFNQMIEENKVK 488
            L   + M+ +  VK
Sbjct: 572 VLQERSLMVAQKAVK 586



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/333 (22%), Positives = 154/333 (46%), Gaps = 35/333 (10%)

Query: 24  AENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAG 83
           A  LF E   +++VSW+ +I GY+ N     +   F  M +  +  +  ++V ++ A   
Sbjct: 200 AAKLFHETNVRDLVSWNTMIAGYAKNNDCRNAFSLFREMRIGNVECDRVSLVSLISACTN 259

Query: 84  LQNLELARSIHGLMVKFGLE----------------------SDLFEGLKNPYLVSCNAI 121
            ++L + +++H  +   G+E                        +F+ L +  + S N++
Sbjct: 260 XRDLHMGKAVHAFIKVSGMEMMIHFETALINMYSKCGSIELGRKVFDELADENIASWNSM 319

Query: 122 VAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKL-- 179
           + G++      +A+ L+N  +   + P+ VTML +I  C + G     +L  G+ I    
Sbjct: 320 IYGYVECGFNIEALSLWNVIQSRKIKPDEVTMLGLISACRSSG-----DLHQGIQINSYI 374

Query: 180 ----GLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDA 235
                L     + N+++DMY+    +D A  +F +M  +DVISWT ++  +       +A
Sbjct: 375 ESSDHLSGSTVLCNALIDMYAKCGSMDRAETVFSKMPRRDVISWTSIIVGYAINGEGEEA 434

Query: 236 LKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV-LGGLQSELRLSNSIIA 294
           L  FR+M   +I  ++V  L ++S     G + +GK L+  +     ++ ++     ++ 
Sbjct: 435 LLAFRKMGAEKIEPNSVTFLGVLSACDHAGLVDKGKNLYDIMCKYYHIEPKIEHCGCMVD 494

Query: 295 MYSKCGDLDSS-RSVFNQITEKSLVSWTAIISG 326
           M+++ G L+ + + V +   E + V W  +I+ 
Sbjct: 495 MHARAGMLEEAYKFVKDMPVEPNAVVWRMLINA 527



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 85/173 (49%), Gaps = 18/173 (10%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+  Y K G +  AE +F ++P ++V+SW+ +I GY+ING  E+++ AF  M    + PN
Sbjct: 390 LIDMYAKCGSMDRAETVFSKMPRRDVISWTSIIVGYAINGEGEEALLAFRKMGAEKIEPN 449

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVK-FGLESDLFEGLKNPYLVSCNAIVAGFINNK 129
           S T +GVL A      ++  ++++ +M K + +E         P +  C  +V       
Sbjct: 450 SVTFLGVLSACDHAGLVDKGKNLYDIMCKYYHIE---------PKIEHCGCMVDMHARAG 500

Query: 130 LFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLI 182
           + ++A   + F +   + PNAV    +I  C   G   L     GL +  GLI
Sbjct: 501 MLEEA---YKFVKDMPVEPNAVVWRMLINACRVHGDFNL-----GLNLVSGLI 545



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 82/179 (45%), Gaps = 23/179 (12%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + L++ Y K G I+    +FDE+ ++N+ SW+ +I+GY   GF+ +++  ++ +    + 
Sbjct: 286 TALINMYSKCGSIELGRKVFDELADENIASWNSMIYGYVECGFNIEALSLWNVIQSRKIK 345

Query: 69  PNSFTMVGVLVAAAGLQNLE--------------------LARSIHGLMVKFG---LESD 105
           P+  TM+G++ A     +L                     L  ++  +  K G       
Sbjct: 346 PDEVTMLGLISACRSSGDLHQGIQINSYIESSDHLSGSTVLCNALIDMYAKCGSMDRAET 405

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
           +F  +    ++S  +I+ G+  N   ++A+L F       + PN+VT L V+  C   G
Sbjct: 406 VFSKMPRRDVISWTSIIVGYAINGEGEEALLAFRKMGAEKIEPNSVTFLGVLSACDHAG 464


>gi|356519887|ref|XP_003528600.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 813

 Score =  276 bits (707), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 176/558 (31%), Positives = 299/558 (53%), Gaps = 29/558 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + LL+ Y   G   +A  +FDE+PE++ VSW+ VI   S++GF+E+++  F  M+
Sbjct: 171 DVFVGNTLLAFYGNCGLFGDAMKVFDEMPERDKVSWNTVIGLCSLHGFYEEALGFFRVMV 230

Query: 64  LS--GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL------------------- 102
            +  G+ P+  T+V VL   A  ++  +AR +H   +K GL                   
Sbjct: 231 AAKPGIQPDLVTVVSVLPVCAETEDKVMARIVHCYALKVGLLGGHVKVGNALVDVYGKCG 290

Query: 103 ----ESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                  +F+ +    ++S NAI+  F     +  A+ +F      G+ PN+VT+ +++ 
Sbjct: 291 SEKASKKVFDEIDERNVISWNAIITSFSFRGKYMDALDVFRLMIDEGMRPNSVTISSMLP 350

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
               LG   L   +HG ++K+ +  DV ++NS++DMY+       A  IF +M  ++++S
Sbjct: 351 VLGELGLFKLGMEVHGFSLKMAIESDVFISNSLIDMYAKSGSSRIASTIFNKMGVRNIVS 410

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           W  M+  F       +A+++ R+M+      + V   N++   A LG L  GK++HA+++
Sbjct: 411 WNAMIANFARNRLEYEAVELVRQMQAKGETPNNVTFTNVLPACARLGFLNVGKEIHARII 470

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
             G   +L +SN++  MYSKCG L+ +++VFN I+ +  VS+  +I GY +   + E+L 
Sbjct: 471 RVGSSLDLFVSNALTDMYSKCGCLNLAQNVFN-ISVRDEVSYNILIIGYSRTNDSLESLR 529

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
            F +MR       D ++ + +++A   LA +    ++HG+     F  +  V N L+  Y
Sbjct: 530 LFSEMRLLGMRP-DIVSFMGVVSACANLAFIRQGKEIHGLLVRKLFHTHLFVANSLLDLY 588

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
           ++CG +DLA  VF  +   +DV SWNT+I GYG+ G  +TA+ L+  M E G   DS ++
Sbjct: 589 TRCGRIDLATKVFYCIQN-KDVASWNTMILGYGMRGELDTAINLFEAMKEDGVEYDSVSF 647

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
           +++L+AC H GL   G   F  M + N ++P+  HY C+VDLL RAG + +A+ L   L 
Sbjct: 648 VAVLSACSHGGLIEKGRKYFKMMCDLN-IEPTHTHYACMVDLLGRAGLMEEAADLIRGLS 706

Query: 519 EGMGPNIWRALLSGCVLH 536
                NIW ALL  C +H
Sbjct: 707 IIPDTNIWGALLGACRIH 724



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 124/483 (25%), Positives = 233/483 (48%), Gaps = 53/483 (10%)

Query: 39  WSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMV 98
           W+ +I   SI G  +     ++ M+ +G+ P+  T   VL   +    +   R +HG+  
Sbjct: 106 WNTLIRANSIAGVFD-GFGTYNTMVRAGVKPDECTYPFVLKVCSDFVEVRKGREVHGVAF 164

Query: 99  KFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFN------------------- 139
           K G + D+F G         N ++A + N  LF  A+ +F+                   
Sbjct: 165 KLGFDGDVFVG---------NTLLAFYGNCGLFGDAMKVFDEMPERDKVSWNTVIGLCSL 215

Query: 140 ---------FFR-----GSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLI-LD 184
                    FFR       G+ P+ VT+++V+  C     + +  ++H   +K+GL+   
Sbjct: 216 HGFYEEALGFFRVMVAAKPGIQPDLVTVVSVLPVCAETEDKVMARIVHCYALKVGLLGGH 275

Query: 185 VSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAG---DALKIFRE 241
           V V N+++D+Y       A+ ++F E++ ++VISW     +   F + G   DAL +FR 
Sbjct: 276 VKVGNALVDVYGKCGSEKASKKVFDEIDERNVISWN---AIITSFSFRGKYMDALDVFRL 332

Query: 242 MRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGD 301
           M    +  ++V + +++ V   LG  K G ++H   +   ++S++ +SNS+I MY+K G 
Sbjct: 333 MIDEGMRPNSVTISSMLPVLGELGLFKLGMEVHGFSLKMAIESDVFISNSLIDMYAKSGS 392

Query: 302 LDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILT 361
              + ++FN++  +++VSW A+I+ + +N    EA+ + ++  Q K ++ +++T  ++L 
Sbjct: 393 SRIASTIFNKMGVRNIVSWNAMIANFARNRLEYEAV-ELVRQMQAKGETPNNVTFTNVLP 451

Query: 362 ASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVV 421
           A   L  L +  ++H      G      V N L   YSKCG ++LA  VF     +RD V
Sbjct: 452 ACARLGFLNVGKEIHARIIRVGSSLDLFVSNALTDMYSKCGCLNLAQNVFNIS--VRDEV 509

Query: 422 SWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQM 481
           S+N +I GY        +L L+ +M   G  PD  +++ +++AC +      G  I   +
Sbjct: 510 SYNILIIGYSRTNDSLESLRLFSEMRLLGMRPDIVSFMGVVSACANLAFIRQGKEIHGLL 569

Query: 482 IEE 484
           + +
Sbjct: 570 VRK 572



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 110/381 (28%), Positives = 197/381 (51%), Gaps = 10/381 (2%)

Query: 138 FNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSC 197
           +N    +G+ P+  T   V++ C           +HG+  KLG   DV V N++L  Y  
Sbjct: 125 YNTMVRAGVKPDECTYPFVLKVCSDFVEVRKGREVHGVAFKLGFDGDVFVGNTLLAFYGN 184

Query: 198 LMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREM--RKSRIICDTVALL 255
                 A+++F EM  +D +SW  ++GL     +  +AL  FR M   K  I  D V ++
Sbjct: 185 CGLFGDAMKVFDEMPERDKVSWNTVIGLCSLHGFYEEALGFFRVMVAAKPGIQPDLVTVV 244

Query: 256 NLISVNAILGDLKRGKQLHAQVV-LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE 314
           +++ V A   D    + +H   + +G L   +++ N+++ +Y KCG   +S+ VF++I E
Sbjct: 245 SVLPVCAETEDKVMARIVHCYALKVGLLGGHVKVGNALVDVYGKCGSEKASKKVFDEIDE 304

Query: 315 KSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQ 374
           ++++SW AII+ +   G   +AL+ F  M  E     +S+T+ S+L   GEL   ++ ++
Sbjct: 305 RNVISWNAIITSFSFRGKYMDALDVFRLMIDEGMRP-NSVTISSMLPVLGELGLFKLGME 363

Query: 375 LHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNG 434
           +HG + +        + N LI  Y+K G+  +A  +F +MG +R++VSWN +I  +  N 
Sbjct: 364 VHGFSLKMAIESDVFISNSLIDMYAKSGSSRIASTIFNKMG-VRNIVSWNAMIANFARNR 422

Query: 435 HGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY 494
               A+ L  +M   GE P++ T+ ++L AC   G  N G  I  ++I   +V  S + +
Sbjct: 423 LEYEAVELVRQMQAKGETPNNVTFTNVLPACARLGFLNVGKEIHARII---RVGSSLDLF 479

Query: 495 --GCVVDLLARAGCLSDASGL 513
               + D+ ++ GCL+ A  +
Sbjct: 480 VSNALTDMYSKCGCLNLAQNV 500



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 86/329 (26%), Positives = 152/329 (46%), Gaps = 18/329 (5%)

Query: 234 DALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSII 293
           D    +  M ++ +  D      ++ V +   ++++G+++H      G   ++ + N+++
Sbjct: 120 DGFGTYNTMVRAGVKPDECTYPFVLKVCSDFVEVRKGREVHGVAFKLGFDGDVFVGNTLL 179

Query: 294 AMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD-SVD 352
           A Y  CG    +  VF+++ E+  VSW  +I     +G   EAL  F  M   K     D
Sbjct: 180 AFYGNCGLFGDAMKVFDEMPERDKVSWNTVIGLCSLHGFYEEALGFFRVMVAAKPGIQPD 239

Query: 353 SITLVSILTASGELAALEICLQLHGIAFEAG-FPRYRSVQNCLISSYSKCGNVDLAYIVF 411
            +T+VS+L    E     +   +H  A + G    +  V N L+  Y KCG+   +  VF
Sbjct: 240 LVTVVSVLPVCAETEDKVMARIVHCYALKVGLLGGHVKVGNALVDVYGKCGSEKASKKVF 299

Query: 412 EEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLT 471
           +E+   R+V+SWN II  +   G    AL ++  M + G  P+S T  S+L   G  GL 
Sbjct: 300 DEID-ERNVISWNAIITSFSFRGKYMDALDVFRLMIDEGMRPNSVTISSMLPVLGELGLF 358

Query: 472 NDGLVIFN---QMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMG-PNI-- 525
             G+ +     +M  E+ V  S      ++D+ A++G    +S +A  +   MG  NI  
Sbjct: 359 KLGMEVHGFSLKMAIESDVFISNS----LIDMYAKSG----SSRIASTIFNKMGVRNIVS 410

Query: 526 WRALLSGCVLHVGRFQDAEALRSGSQKKG 554
           W A+++    +   ++  E +R   Q KG
Sbjct: 411 WNAMIANFARNRLEYEAVELVRQ-MQAKG 438



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 95/216 (43%), Gaps = 8/216 (3%)

Query: 256 NLISVNAILGDLKRGKQLHAQVVLGG-LQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT- 313
           NL+ +  +   L + KQ+HA  +L G L   + L  S+I  Y+  G   +S  +F     
Sbjct: 39  NLLQLCTLCDTLSQTKQVHAYSLLHGFLPRSVSLCASLILQYASFGHPSNSLLLFQHSVA 98

Query: 314 -EKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEIC 372
             +S   W  +I      G   +    +  M +      D  T   +L    +   +   
Sbjct: 99  YSRSAFLWNTLIRANSIAG-VFDGFGTYNTMVRAGVKP-DECTYPFVLKVCSDFVEVRKG 156

Query: 373 LQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGV 432
            ++HG+AF+ GF     V N L++ Y  CG    A  VF+EM   RD VSWNT+I    +
Sbjct: 157 REVHGVAFKLGFDGDVFVGNTLLAFYGNCGLFGDAMKVFDEMP-ERDKVSWNTVIGLCSL 215

Query: 433 NGHGETALALYHKM--TETGEVPDSSTYLSILNACG 466
           +G  E AL  +  M   + G  PD  T +S+L  C 
Sbjct: 216 HGFYEEALGFFRVMVAAKPGIQPDLVTVVSVLPVCA 251


>gi|224121686|ref|XP_002318647.1| predicted protein [Populus trichocarpa]
 gi|222859320|gb|EEE96867.1| predicted protein [Populus trichocarpa]
          Length = 744

 Score =  276 bits (707), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 172/562 (30%), Positives = 291/562 (51%), Gaps = 31/562 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + LL  Y+K G    A ++F+ + E++ VSW+ +I G+  +G + KS+  F  M+
Sbjct: 73  DIFVKNSLLGMYWKCGAGGNAVDMFERMEERDSVSWNTMISGFCQSGDYVKSLVMFRRMV 132

Query: 64  --LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------- 105
               G   N    +  L + A ++ L     IHG +VK G++SD                
Sbjct: 133 KECGGSYHNRVACLAALSSCASIKCLTHGLEIHGFLVKKGVDSDEFLVSALIEMYMKCGD 192

Query: 106 ------LFEGLKNPYLVS-----CNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTML 154
                 +FE +++  LV       N ++ G+++N+    A+ LF      G+ P++ T++
Sbjct: 193 IKNAENVFERIRDNELVGRNMAVWNVMILGYVSNECLSLALELFVEMLELGISPDSSTVV 252

Query: 155 TVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
            V+  C  L   A+ + IHGL + LGL  DV V  ++++MY    D + ++QIF+  +  
Sbjct: 253 VVLVLCSQLLDLAVGKQIHGLILGLGLDDDVRVGTALMEMYFKCGDPETSLQIFKRSQNH 312

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
           +++ W  +M       Y  +AL+ F E        D V LL  +   + L    RG  +H
Sbjct: 313 NLVMWGSVMLNCAQNGYPNEALEFFSEFMLDCGFPDPVILLAALRACSFLSLKPRGMAIH 372

Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
              +  G  S++ +  +++  Y KCGD++ ++ VF  ++ + LVSW A+ISG+ QN CA 
Sbjct: 373 GFAIKMGFDSDVFVGGALVDFYGKCGDMEYAQQVFYGLSTRDLVSWNALISGFAQNKCAD 432

Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
           EAL  F  M Q K    +++T+  IL+    L+ + +C ++H       F     V N L
Sbjct: 433 EALKAFRDM-QSKQIKPNTVTMACILSVCTHLSVMILCKEVHCYLLRHWFETNALVNNSL 491

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           IS+Y+KCG++  +  VFE++  +R+ V+WN+I+ G+G++G  +   A + KM E    PD
Sbjct: 492 ISAYAKCGDIHSSRTVFEKLP-VRNEVTWNSILLGFGMHGRTDEMFATFEKMKEANIKPD 550

Query: 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLA 514
             T+ S+L++C H+G  + G   FN M+E+  ++P  E Y C+VDLL RAG L+ A  L 
Sbjct: 551 HGTFTSLLSSCSHSGKVDAGWKYFNSMMEDYNLEPRVEQYTCMVDLLGRAGNLNQAYDLI 610

Query: 515 GKLLEGMGPNIWRALLSGCVLH 536
             +       IW +LL+ C  H
Sbjct: 611 MSMPCSPDDRIWGSLLASCKNH 632



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 128/466 (27%), Positives = 227/466 (48%), Gaps = 31/466 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPE-----KNVVSWSIVIHGYSINGFHEKSMKA 58
           D +  S L+  Y K G IK AEN+F+ I +     +N+  W+++I GY  N     +++ 
Sbjct: 176 DEFLVSALIEMYMKCGDIKNAENVFERIRDNELVGRNMAVWNVMILGYVSNECLSLALEL 235

Query: 59  FSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------- 105
           F  M+  G+ P+S T+V VLV  + L +L + + IHGL++  GL+ D             
Sbjct: 236 FVEMLELGISPDSSTVVVVLVLCSQLLDLAVGKQIHGLILGLGLDDDVRVGTALMEMYFK 295

Query: 106 ---------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTV 156
                    +F+  +N  LV   +++     N    +A+  F+ F      P+ V +L  
Sbjct: 296 CGDPETSLQIFKRSQNHNLVMWGSVMLNCAQNGYPNEALEFFSEFMLDCGFPDPVILLAA 355

Query: 157 IRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
           +R C  L  +     IHG  IK+G   DV V  +++D Y    D++ A Q+F  +  +D+
Sbjct: 356 LRACSFLSLKPRGMAIHGFAIKMGFDSDVFVGGALVDFYGKCGDMEYAQQVFYGLSTRDL 415

Query: 217 ISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQ 276
           +SW  ++  F   + A +ALK FR+M+  +I  +TV +  ++SV   L  +   K++H  
Sbjct: 416 VSWNALISGFAQNKCADEALKAFRDMQSKQIKPNTVTMACILSVCTHLSVMILCKEVHCY 475

Query: 277 VVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
           ++    ++   ++NS+I+ Y+KCGD+ SSR+VF ++  ++ V+W +I+ G+  +G   E 
Sbjct: 476 LLRHWFETNALVNNSLISAYAKCGDIHSSRTVFEKLPVRNEVTWNSILLGFGMHGRTDEM 535

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ-NCLI 395
              F KM++      D  T  S+L++      ++   +      E      R  Q  C++
Sbjct: 536 FATFEKMKEANIKP-DHGTFTSLLSSCSHSGKVDAGWKYFNSMMEDYNLEPRVEQYTCMV 594

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALA 441
               + GN++ AY +   M    D   W +++       HG T LA
Sbjct: 595 DLLGRAGNLNQAYDLIMSMPCSPDDRIWGSLL--ASCKNHGNTKLA 638



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 117/449 (26%), Positives = 210/449 (46%), Gaps = 32/449 (7%)

Query: 49  NGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAA-AGLQNLELARSIHGLMVKFGL----- 102
           +GF E +++ +   +  G     F     L+ A  GL ++   + IHG ++KFG      
Sbjct: 16  DGFFEDAIRVYLDFIECGFPVEEFRFFPCLIKAFGGLYDVNKGKQIHGHLLKFGFLQDIF 75

Query: 103 -----------------ESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFF--RG 143
                              D+FE ++    VS N +++GF  +  + +++++F       
Sbjct: 76  VKNSLLGMYWKCGAGGNAVDMFERMEERDSVSWNTMISGFCQSGDYVKSLVMFRRMVKEC 135

Query: 144 SGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDA 203
            G   N V  L  +  C ++        IHG  +K G+  D  + +++++MY    D+  
Sbjct: 136 GGSYHNRVACLAALSSCASIKCLTHGLEIHGFLVKKGVDSDEFLVSALIEMYMKCGDIKN 195

Query: 204 AIQIFR-----EMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLI 258
           A  +F      E+  +++  W  M+  +V  E    AL++F EM +  I  D+  ++ ++
Sbjct: 196 AENVFERIRDNELVGRNMAVWNVMILGYVSNECLSLALELFVEMLELGISPDSSTVVVVL 255

Query: 259 SVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLV 318
            + + L DL  GKQ+H  ++  GL  ++R+  +++ MY KCGD ++S  +F +    +LV
Sbjct: 256 VLCSQLLDLAVGKQIHGLILGLGLDDDVRVGTALMEMYFKCGDPETSLQIFKRSQNHNLV 315

Query: 319 SWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGI 378
            W +++    QNG   EAL  F +   +     D + L++ L A   L+     + +HG 
Sbjct: 316 MWGSVMLNCAQNGYPNEALEFFSEFMLD-CGFPDPVILLAALRACSFLSLKPRGMAIHGF 374

Query: 379 AFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGET 438
           A + GF     V   L+  Y KCG+++ A  VF  +   RD+VSWN +I G+  N   + 
Sbjct: 375 AIKMGFDSDVFVGGALVDFYGKCGDMEYAQQVFYGLS-TRDLVSWNALISGFAQNKCADE 433

Query: 439 ALALYHKMTETGEVPDSSTYLSILNACGH 467
           AL  +  M      P++ T   IL+ C H
Sbjct: 434 ALKAFRDMQSKQIKPNTVTMACILSVCTH 462



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 114/380 (30%), Positives = 177/380 (46%), Gaps = 35/380 (9%)

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           IHG  +K G + D+ V NS+L MY        A+ +F  ME +D +SW  M+  F     
Sbjct: 61  IHGHLLKFGFLQDIFVKNSLLGMYWKCGAGGNAVDMFERMEERDSVSWNTMISGFCQ--- 117

Query: 232 AGDALK---IFREMRKSRIIC-----DTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
           +GD +K   +FR M K    C     + VA L  +S  A +  L  G ++H  +V  G+ 
Sbjct: 118 SGDYVKSLVMFRRMVKE---CGGSYHNRVACLAALSSCASIKCLTHGLEIHGFLVKKGVD 174

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVS-----WTAIISGYVQNGCAREALN 338
           S+  L +++I MY KCGD+ ++ +VF +I +  LV      W  +I GYV N C   AL 
Sbjct: 175 SDEFLVSALIEMYMKCGDIKNAENVFERIRDNELVGRNMAVWNVMILGYVSNECLSLALE 234

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
            F++M  E   S DS T+V +L    +L  L +  Q+HG+    G      V   L+  Y
Sbjct: 235 LFVEML-ELGISPDSSTVVVVLVLCSQLLDLAVGKQIHGLILGLGLDDDVRVGTALMEMY 293

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
            KCG+ + +  +F+      ++V W +++     NG+   AL  + +       PD    
Sbjct: 294 FKCGDPETSLQIFKRSQN-HNLVMWGSVMLNCAQNGYPNEALEFFSEFMLDCGFPDPVIL 352

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY--GCVVDLLARAGCLSDAS----G 512
           L+ L AC    L   G+ I    I   K+    + +  G +VD   + G +  A     G
Sbjct: 353 LAALRACSFLSLKPRGMAIHGFAI---KMGFDSDVFVGGALVDFYGKCGDMEYAQQVFYG 409

Query: 513 LAGKLLEGMGPNIWRALLSG 532
           L+ + L       W AL+SG
Sbjct: 410 LSTRDLVS-----WNALISG 424



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 128/257 (49%), Gaps = 6/257 (2%)

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLN-LISVNAILGDLKRGKQL 273
           DV    RM+    +  +  DA++++ +  +     +       LI     L D+ +GKQ+
Sbjct: 2   DVSKVNRMIKECTEDGFFEDAIRVYLDFIECGFPVEEFRFFPCLIKAFGGLYDVNKGKQI 61

Query: 274 HAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA 333
           H  ++  G   ++ + NS++ MY KCG   ++  +F ++ E+  VSW  +ISG+ Q+G  
Sbjct: 62  HGHLLKFGFLQDIFVKNSLLGMYWKCGAGGNAVDMFERMEERDSVSWNTMISGFCQSGDY 121

Query: 334 REALNQFIKMRQEKTDSV-DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN 392
            ++L  F +M +E   S  + +  ++ L++   +  L   L++HG   + G      + +
Sbjct: 122 VKSLVMFRRMVKECGGSYHNRVACLAALSSCASIKCLTHGLEIHGFLVKKGVDSDEFLVS 181

Query: 393 CLISSYSKCGNVDLAYIVFEEMG----FLRDVVSWNTIIYGYGVNGHGETALALYHKMTE 448
            LI  Y KCG++  A  VFE +       R++  WN +I GY  N     AL L+ +M E
Sbjct: 182 ALIEMYMKCGDIKNAENVFERIRDNELVGRNMAVWNVMILGYVSNECLSLALELFVEMLE 241

Query: 449 TGEVPDSSTYLSILNAC 465
            G  PDSST + +L  C
Sbjct: 242 LGISPDSSTVVVVLVLC 258


>gi|449502685|ref|XP_004161713.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g47840-like [Cucumis
           sativus]
          Length = 712

 Score =  276 bits (707), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 180/617 (29%), Positives = 297/617 (48%), Gaps = 60/617 (9%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D   ++  L    K+  +K+A +LFD++P+++ VSW+ +I GY  +    ++++ FS M
Sbjct: 47  VDLAEANNQLKILVKTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKM 106

Query: 63  ML-SGLLPNSFTM-VGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPYL--- 115
            L S L  + F + +G+     GL  L    ++HG  VK GL + +F G  L + Y+   
Sbjct: 107 RLQSELRIDPFLLSLGLKTCGLGLNYL-YGTNLHGFSVKXGLVNSVFVGSALLDMYMKIG 165

Query: 116 -----------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                            V+  A++ G +     +  +  F+    S +  ++      ++
Sbjct: 166 EIGRSCKVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALK 225

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
                G+      IH  T+K G   +  V NS+  MY+    LD  +  FR+M   DV+S
Sbjct: 226 ASADSGALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVS 285

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           WT ++  ++        L+ F+ MR S +I +      +IS  A    LK G+QLHA V+
Sbjct: 286 WTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVL 345

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
             G  + L ++NSI+ +YSKCG+L S   VF  +  + +++W+ II+ Y Q G   EA  
Sbjct: 346 CVGFVNALSVANSIMTLYSKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFE 405

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
              +MR E     +   L S+L+  G +A LE   QLH      G  +   V + LI  Y
Sbjct: 406 YLSRMRSEGPKP-NEFALASVLSVCGSMAILEQGKQLHAHVLSVGLEQTSMVCSALIIMY 464

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
           +KCG++  A  +F +  +  D++SW  +I GY  +GH + A+ L+  + + G  PDS T+
Sbjct: 465 AKCGSIAEASKIFMD-SWKDDIISWTAMISGYAEHGHSQEAIELFENIQKVGLRPDSVTF 523

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
           + +L AC HAG+ + G   FN M ++  + PS+EHYGC++DLL RAG L DA  L   + 
Sbjct: 524 IGVLTACSHAGMVDLGFYYFNSMSKDYHITPSKEHYGCMIDLLCRAGRLHDAETLIRSMP 583

Query: 519 EGMGPNIWRALLSGCVLH---------------------------------VGRFQDAEA 545
                 +W  LL  C +H                                  G++++A  
Sbjct: 584 IQWDDVVWSTLLRACRIHGDVDCGQRAAAEVLKLDPNCAGTHITLANIFAAKGKWKEAAN 643

Query: 546 LRSGSQKKGIIKIPGIS 562
           +R   + KG++K PG S
Sbjct: 644 IRMLMKSKGVVKEPGWS 660


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  276 bits (707), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 184/557 (33%), Positives = 289/557 (51%), Gaps = 30/557 (5%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  + L+  Y K G + EA  +FD +PE N+VSW+ +I  +S NGF   S      M
Sbjct: 179 LDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEM 238

Query: 63  M-LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL--------------- 106
           +   GLLP+  T+V +L   AG   +++   IHGL VK GL  ++               
Sbjct: 239 LGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGY 298

Query: 107 -------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFR--GSGLVPNAVTMLTVI 157
                  F    N  +VS N +++ F       +A  L    +  G  +  N VT+L V+
Sbjct: 299 LNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVL 358

Query: 158 RGCV-ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
             C+  L  R+L EL HG + +      V ++N+ +  Y+    L++A ++F  +  K V
Sbjct: 359 PACLDKLQLRSLKEL-HGYSFR-HCFQHVELSNAFILAYAKCGALNSAEKVFHGIGDKTV 416

Query: 217 ISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQ 276
            SW  ++G          AL +  +M  S    D   + +L+   A L  L+ GK++H  
Sbjct: 417 SSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKEIHGY 476

Query: 277 VVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
           V+  GL+++  +  S+++ Y  CG   S+R +F+++ +K+LVSW A+ISGY QNG   E+
Sbjct: 477 VLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRMKDKNLVSWNAMISGYSQNGLPYES 536

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
           L  F K   E   S   I +VS+  A  +L+AL +  + HG   +A       V   +I 
Sbjct: 537 LALFRKSLSEGIQS-HEIAIVSVFGACSQLSALRLGKEAHGYVLKALQTEDAFVGCSIID 595

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
            Y+K G +  +  VF+ +   ++V SWN II  +G++GHG+ A+ LY +M + G++PD  
Sbjct: 596 MYAKSGCIKESRKVFDGLKD-KNVASWNAIIVAHGIHGHGKEAIELYERMKKVGQMPDRF 654

Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK 516
           TY+ IL ACGHAGL  +GL  F +M   N ++P  EHY C++D+LARAG L DA  L  +
Sbjct: 655 TYIGILMACGHAGLVEEGLKYFKEMQNFNLIEPKLEHYACLIDMLARAGRLDDALRLVNE 714

Query: 517 LLEGMGPNIWRALLSGC 533
           + E     IW +LL  C
Sbjct: 715 MPEEADNRIWSSLLRSC 731



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 161/582 (27%), Positives = 280/582 (48%), Gaps = 42/582 (7%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML-SG 66
           +++L+  Y   G   ++  +FD +  KN++ W+ ++ GY+ NG +   +K F  ++  + 
Sbjct: 82  NTRLIKMYAMCGSPLDSRLVFDNMETKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTD 141

Query: 67  LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG----------------- 109
             P++FT   V+ A  G+ ++ L   IHG+++K GL  D+F G                 
Sbjct: 142 FQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAM 201

Query: 110 -----LKNPYLVSCNAIVAGFINNKLFQQAV-LLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
                +    LVS N+++  F  N   + +  LL       GL+P+ VT++T++  C   
Sbjct: 202 KVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGE 261

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
           G   +   IHGL +KLGL  +V VNN+++ MYS    L+ A   F +   K+V+SW  M+
Sbjct: 262 GEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMI 321

Query: 224 GLFVDFEYAGDALKIFREM--RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
             F       +A  + +EM  +   +  + V +LN++        L+  K+LH       
Sbjct: 322 SAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKLQLRSLKELHGYSFRHC 381

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
            Q  + LSN+ I  Y+KCG L+S+  VF+ I +K++ SW A+I G+ QNG  R+AL+   
Sbjct: 382 FQ-HVELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLF 440

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +M        D  T+ S+L A   L +L+   ++HG     G      V   L+S Y  C
Sbjct: 441 QMTYSGQQP-DWFTISSLLLACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHC 499

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G    A ++F+ M   +++VSWN +I GY  NG    +LAL+ K    G        +S+
Sbjct: 500 GKASSARVLFDRMKD-KNLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSV 558

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGC-VVDLLARAGCLSDASGLAGKLLEG 520
             AC        G      +++   ++      GC ++D+ A++GC+ ++     K+ +G
Sbjct: 559 FGACSQLSALRLGKEAHGYVLK--ALQTEDAFVGCSIIDMYAKSGCIKESR----KVFDG 612

Query: 521 M-GPNI--WRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIP 559
           +   N+  W A++   V H       EA+    + K + ++P
Sbjct: 613 LKDKNVASWNAII---VAHGIHGHGKEAIELYERMKKVGQMP 651



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 153/286 (53%), Gaps = 6/286 (2%)

Query: 184 DVSVNNSVLDMYS-CLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREM 242
           D  +N  ++ MY+ C   LD+ + +F  ME K++I W  ++  +      GD +K+F ++
Sbjct: 78  DYVLNTRLIKMYAMCGSPLDSRL-VFDNMETKNLIQWNALVSGYTRNGLYGDVVKVFMDL 136

Query: 243 -RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGD 301
              +    D     ++I     + D++ G+ +H  V+  GL  ++ + N+++ MY KCG 
Sbjct: 137 VSDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGA 196

Query: 302 LDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILT 361
           +D +  VF+ + E +LVSW ++I  + +NG +R++ +  ++M  E+    D +T+V+IL 
Sbjct: 197 VDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILP 256

Query: 362 ASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVV 421
                  ++I + +HG+A + G      V N ++  YSKCG ++ A + F +    ++VV
Sbjct: 257 VCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNN-KNVV 315

Query: 422 SWNTIIYGYGVNGHGETALALYHKMTETGE--VPDSSTYLSILNAC 465
           SWNT+I  + + G    A  L  +M   GE    +  T L++L AC
Sbjct: 316 SWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPAC 361


>gi|449449950|ref|XP_004142727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Cucumis sativus]
          Length = 712

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 180/617 (29%), Positives = 297/617 (48%), Gaps = 60/617 (9%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D   ++  L    K+  +K+A +LFD++P+++ VSW+ +I GY  +    ++++ FS M
Sbjct: 47  VDLAEANNQLKILVKTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKM 106

Query: 63  ML-SGLLPNSFTM-VGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPYL--- 115
            L S L  + F + +G+     GL  L    ++HG  VK GL + +F G  L + Y+   
Sbjct: 107 RLQSELRIDPFLLSLGLKTCGLGLNYL-YGTNLHGFSVKTGLVNSVFVGSALLDMYMKIG 165

Query: 116 -----------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                            V+  A++ G +     +  +  F+    S +  ++      ++
Sbjct: 166 EIGRSCKVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALK 225

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
                G+      IH  T+K G   +  V NS+  MY+    LD  +  FR+M   DV+S
Sbjct: 226 ASADSGALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVS 285

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           WT ++  ++        L+ F+ MR S +I +      +IS  A    LK G+QLHA V+
Sbjct: 286 WTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVL 345

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
             G  + L ++NSI+ +YSKCG+L S   VF  +  + +++W+ II+ Y Q G   EA  
Sbjct: 346 CVGFVNALSVANSIMTLYSKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFE 405

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
              +MR E     +   L S+L+  G +A LE   QLH      G  +   V + LI  Y
Sbjct: 406 YLSRMRSEGPKP-NEFALASVLSVCGSMAILEQGKQLHAHVLSVGLEQTSMVCSALIIMY 464

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
           +KCG++  A  +F +  +  D++SW  +I GY  +GH + A+ L+  + + G  PDS T+
Sbjct: 465 AKCGSIAEASKIFMD-SWKDDIISWTAMISGYAEHGHSQEAIELFENIQKVGLRPDSVTF 523

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
           + +L AC HAG+ + G   FN M ++  + PS+EHYGC++DLL RAG L DA  L   + 
Sbjct: 524 IGVLTACSHAGMVDLGFYYFNSMSKDYHITPSKEHYGCMIDLLCRAGRLHDAETLIRSMP 583

Query: 519 EGMGPNIWRALLSGCVLH---------------------------------VGRFQDAEA 545
                 +W  LL  C +H                                  G++++A  
Sbjct: 584 IQWDDVVWSTLLRACRIHGDVDCGQRAAAEVLKLDPNCAGTHITLANIFAAKGKWKEAAN 643

Query: 546 LRSGSQKKGIIKIPGIS 562
           +R   + KG++K PG S
Sbjct: 644 IRMLMKSKGVVKEPGWS 660


>gi|449460574|ref|XP_004148020.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Cucumis sativus]
          Length = 816

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 164/548 (29%), Positives = 279/548 (50%), Gaps = 24/548 (4%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           ++S + K GK+ +A  LFD + E+  VSW+I+I GY  +   +++ + ++ M   G+ P+
Sbjct: 80  MISGHLKFGKLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPD 139

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE----------------------SDLFE 108
             T+V +L     L+   +   IH  ++K G E                      S LF+
Sbjct: 140 YVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFK 199

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            + N   V+ N+++ G+ N  L ++A+ LF     SG+ P+  T   ++   V L     
Sbjct: 200 HMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKF 259

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
            + +HG  +K   + +V V N++LD YS    +D   ++F EM   D IS+  ++  +  
Sbjct: 260 GQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFYEMPELDGISYNVVITSYAW 319

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
                ++  +FR+++ +R          L+S+     +L+ G+Q+H Q +  G   E R+
Sbjct: 320 NGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRV 379

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
            N+++ MY+KC     ++ +F+ I  KS V WTA+IS YVQ G   E +N F  MR+   
Sbjct: 380 ENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGV 439

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
            + D  T  SIL A   LA++ +  QLH +   +GF       + L+ +Y+KCG +  A 
Sbjct: 440 PA-DQATFASILRACANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAI 498

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
             F EM   R+ VSWN +I  Y  NG+ +  L  + +M ++G  PDS ++LS+L+AC H 
Sbjct: 499 KSFGEMP-ERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSACSHC 557

Query: 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRA 528
           G   + L  FN M +  +V P +EHY  +VD+L R G   +A  L  ++       +W +
Sbjct: 558 GFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFDEAEKLMTEMPFEPSEIMWSS 617

Query: 529 LLSGCVLH 536
           +L+ C +H
Sbjct: 618 VLNSCRIH 625



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 113/488 (23%), Positives = 226/488 (46%), Gaps = 36/488 (7%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+  Y K+  +  A  LF  +  K+ V+++ ++ GYS  G +E++++ F  +  SG+ P+
Sbjct: 181 LVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPS 240

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--------------------L 110
            FT   +L AA GL + +  + +HG ++K     ++F G                     
Sbjct: 241 DFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFY 300

Query: 111 KNPYL--VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
           + P L  +S N ++  +  N  F+++  LF   + +          T++    +  +  +
Sbjct: 301 EMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRM 360

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
              IH   I +G   +  V N+++DMY+       A +IF  + CK  + WT M+  +V 
Sbjct: 361 GRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQ 420

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
                + + +F +MR++ +  D     +++   A L  +  G+QLH+ ++  G  S +  
Sbjct: 421 KGKHEEGINVFSDMRRTGVPADQATFASILRACANLASISLGRQLHSLLIRSGFMSNVYS 480

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
            ++++  Y+KCG +  +   F ++ E++ VSW A+IS Y QNG     LN F +M Q   
Sbjct: 481 GSALLDTYAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGY 540

Query: 349 DSVDSITLVSILTASGELAALEICL-------QLHGIAFEAGFPRYRSVQNCLISSYSKC 401
              DS++ +S+L+A      +E  L       Q++ +      P+ R     ++    + 
Sbjct: 541 KP-DSVSFLSVLSACSHCGFVEEALWHFNSMTQIYEVT-----PK-REHYTSMVDVLCRN 593

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G  D A  +  EM F    + W++++    ++ + E A     ++    ++ D++ Y+++
Sbjct: 594 GRFDEAEKLMTEMPFEPSEIMWSSVLNSCRIHKNHELAKKAADRLFNMEDLRDAAPYINM 653

Query: 462 LNACGHAG 469
            N    AG
Sbjct: 654 SNIYAVAG 661



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 131/527 (24%), Positives = 238/527 (45%), Gaps = 64/527 (12%)

Query: 12  LSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNS 71
           ++N+ + G +  A  +FD++P KN +S +++I G+                         
Sbjct: 50  VNNFLERGDLVHAHQVFDQMPAKNTISLNMMISGH------------------------- 84

Query: 72  FTMVGVLVAAAGLQNLELARSIHGLMVKFGLES---DLFEGLKNPYLVSCNAIVAGFINN 128
                                     +KFG  S   +LF+G+     VS   ++ G++ +
Sbjct: 85  --------------------------LKFGKLSKARELFDGMVERTAVSWTILIGGYLQS 118

Query: 129 KLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVN 188
              ++A  L+   R  G+ P+ VT++T++ G   L ++ +   IH   IKLG   ++ V 
Sbjct: 119 NQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVC 178

Query: 189 NSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRII 248
           NS++D Y     L  A Q+F+ M  KD +++  +M  + +     +A+++F E+  S I 
Sbjct: 179 NSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIK 238

Query: 249 CDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSV 308
                   L+S    L D K G+Q+H  V+       + + N+++  YSK   +D    +
Sbjct: 239 PSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKL 298

Query: 309 FNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD--SVDSITLVSILTASGEL 366
           F ++ E   +S+  +I+ Y  NG  +E+ + F K++  + D       TL+SI T+S   
Sbjct: 299 FYEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSS--- 355

Query: 367 AALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTI 426
             L +  Q+H  A   G      V+N L+  Y+KC     A  +F+ +   +  V W  +
Sbjct: 356 LNLRMGRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQKIFDNIA-CKSTVPWTAM 414

Query: 427 IYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENK 486
           I  Y   G  E  + ++  M  TG   D +T+ SIL AC +    + G  + + +I    
Sbjct: 415 ISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLASISLGRQLHSLLIRSGF 474

Query: 487 VKPSQEHYG-CVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSG 532
           +  S  + G  ++D  A+ GC++DA    G++ E    + W AL+S 
Sbjct: 475 M--SNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVS-WNALISA 518



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 105/223 (47%), Gaps = 33/223 (14%)

Query: 273 LHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQ--------------------- 311
           + A +V  G       SN  +  + + GDL  +  VF+Q                     
Sbjct: 30  IDAHIVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGK 89

Query: 312 ----------ITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILT 361
                     + E++ VSWT +I GY+Q+  ++EA   +  MR+   +  D +TLV++L+
Sbjct: 90  LSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEP-DYVTLVTLLS 148

Query: 362 ASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVV 421
             GEL    + +Q+H    + G+     V N L+ +Y K   + LA  +F+ M   +D V
Sbjct: 149 GFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHM-LNKDTV 207

Query: 422 SWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           ++N+++ GY   G  E A+ L+ ++  +G  P   T+ ++L+A
Sbjct: 208 TFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSA 250


>gi|302822082|ref|XP_002992701.1| hypothetical protein SELMODRAFT_135788 [Selaginella moellendorffii]
 gi|300139547|gb|EFJ06286.1| hypothetical protein SELMODRAFT_135788 [Selaginella moellendorffii]
          Length = 941

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 156/572 (27%), Positives = 289/572 (50%), Gaps = 39/572 (6%)

Query: 5   PYNSSKLLSN-----YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAF 59
           PY  +  + N     Y K  ++ +A  +F  IP K+ VSW+ ++  Y+  G    ++   
Sbjct: 341 PYTQNTTVLNAAASLYAKCSRVADASRVFSSIPCKDAVSWNAIVSAYAKQGLFRDAIFLS 400

Query: 60  SHMMLSGLLPNSFTMVGVLVAAA---------GLQNLELARSIHGLMVKFGLESDL---- 106
             M + G +P+  T + +L + +           ++L   R +H  M+  GL+ D     
Sbjct: 401 RQMQVEGFVPDDITFITILYSCSQSALLKQYGNSKSLTDGRQVHSQMISNGLDGDTYLGN 460

Query: 107 ------------------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVP 148
                             F+G+    + S   +++  + N    + + L       G   
Sbjct: 461 LLVQMYGRCGSLDDARAAFQGIHQRNVFSWTILISLLVQNGEASEGLELLKSMDLEGTEA 520

Query: 149 NAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIF 208
           N +T ++++  C   G  +L + IH      GL  D+  +N++L+MY+    LD A  +F
Sbjct: 521 NKITFISLLGACSVTGDLSLGKTIHERIRTKGLESDIITSNALLNMYTTCESLDEARLVF 580

Query: 209 REMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLK 268
             M  +DV+SWT ++  +    Y  +AL+++R M +     D V L++++   A L  L 
Sbjct: 581 ERMVFRDVVSWTIIISAYAHAGYPLEALQLYRRMEQEFSRPDAVTLISVLEACASLRALV 640

Query: 269 RGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYV 328
            GK +H ++V  G+++++ +  ++++ Y KC  ++ +R VF++I +K +V W A+I  Y 
Sbjct: 641 EGKAIHERIVASGVETDVFVGTAVVSFYGKCEAVEDARQVFDRILDKDIVCWNAMIGAYA 700

Query: 329 QNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYR 388
           QN C  +A   +++M + +    D +TL+++L +      +E    LH  A   G+  + 
Sbjct: 701 QNHCEEKAFALYLEMVENQMPPND-VTLITLLDSCSSTCKMERGSSLHREAAARGYLSHT 759

Query: 389 SVQNCLISSYSK-CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMT 447
           SV N LI+ Y+K CGN++ A   FE +   ++VVSW++I+  Y  NG  + A  L+  M 
Sbjct: 760 SVVNALINMYAKCCGNLEAAQTAFESVAS-KNVVSWSSIVAAYARNGEEDRARNLFWTMN 818

Query: 448 ETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCL 507
           + G +P+  T+ S+L+AC HAGL ++G   F  M  ++ ++P+ EHYGC+V+LLA++G +
Sbjct: 819 QDGVLPNIVTFTSVLHACSHAGLADEGWSYFLSMQGDHHLEPTPEHYGCMVNLLAKSGRV 878

Query: 508 SDASGLAGKLLEGMGPNIWRALLSGCVLHVGR 539
             A+     +      + WR+LL  C +H  +
Sbjct: 879 KQAASFMSAMPVQPDASAWRSLLGACEVHTDK 910



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 128/481 (26%), Positives = 216/481 (44%), Gaps = 38/481 (7%)

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL--------------- 106
           M L G+  +  T++  + A A L +    + IH  ++  GL + +               
Sbjct: 1   MDLEGVPGDEITLLNAVSACAALGDSLQGKQIHARILSSGLGASVLLSNSLVYMYGKCGS 60

Query: 107 -------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                  F+ +    L+S NA++  +  ++  +QA+ L+ + R  G  P+ VT  +++  
Sbjct: 61  VEEARNAFDRMPERDLISWNAMITVYAQHECGKQAIQLYAYSRLEGTKPDEVTFASLLNA 120

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C A G      ++H   +    + D  V N ++ MYS    LD A  +F      DV +W
Sbjct: 121 CFASGDLKFGRMLHEHFLGTSFVSDQIVCNGLISMYSDCGSLDDATAVFEWSFRPDVCTW 180

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           T ++  +        A   + +M +  +  + +  L ++   + L  L+ GK +H   + 
Sbjct: 181 TTVIAAYTRHGKLECAFATWSKMHQEGLRSNEITFLTVLDTCSSLEVLETGKHVHRLALG 240

Query: 280 GGLQSELRLSNSIIAMYSKCG-DLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
            GL   LR+ NS+I+MY KC    D +R VF +I+  S++SW+A I+ Y Q+    EA+ 
Sbjct: 241 SGLDFSLRMENSLISMYGKCSRHPDEAREVFLRISRPSVISWSAFIAAYGQHW---EAIK 297

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
            F  M  E     ++ TL S+L A   + A E   ++H +     + +  +V N   S Y
Sbjct: 298 TFELMNLEGVKP-NATTLTSVLRACATVGAHEQGRRIHALVLAGPYTQNTTVLNAAASLY 356

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
           +KC  V  A  VF  +   +D VSWN I+  Y   G    A+ L  +M   G VPD  T+
Sbjct: 357 AKCSRVADASRVFSSIP-CKDAVSWNAIVSAYAKQGLFRDAIFLSRQMQVEGFVPDDITF 415

Query: 459 LSILNACGHAGL---------TNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSD 509
           ++IL +C  + L           DG  + +QMI  N +         +V +  R G L D
Sbjct: 416 ITILYSCSQSALLKQYGNSKSLTDGRQVHSQMI-SNGLDGDTYLGNLLVQMYGRCGSLDD 474

Query: 510 A 510
           A
Sbjct: 475 A 475



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 127/508 (25%), Positives = 231/508 (45%), Gaps = 41/508 (8%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ L+  Y K G ++EA N FD +PE++++SW+ +I  Y+ +   +++++ +++  L G 
Sbjct: 48  SNSLVYMYGKCGSVEEARNAFDRMPERDLISWNAMITVYAQHECGKQAIQLYAYSRLEGT 107

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
            P+  T   +L A     +L+  R +H   +     SD                      
Sbjct: 108 KPDEVTFASLLNACFASGDLKFGRMLHEHFLGTSFVSDQIVCNGLISMYSDCGSLDDATA 167

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +FE    P + +   ++A +  +   + A   ++     GL  N +T LTV+  C +L  
Sbjct: 168 VFEWSFRPDVCTWTTVIAAYTRHGKLECAFATWSKMHQEGLRSNEITFLTVLDTCSSLEV 227

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMY-SCLMDLDAAIQIFREMECKDVISWTRMMG 224
               + +H L +  GL   + + NS++ MY  C    D A ++F  +    VISW+  + 
Sbjct: 228 LETGKHVHRLALGSGLDFSLRMENSLISMYGKCSRHPDEAREVFLRISRPSVISWSAFIA 287

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            +       +A+K F  M    +  +   L +++   A +G  ++G+++HA V+ G    
Sbjct: 288 AYGQH---WEAIKTFELMNLEGVKPNATTLTSVLRACATVGAHEQGRRIHALVLAGPYTQ 344

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
              + N+  ++Y+KC  +  +  VF+ I  K  VSW AI+S Y + G  R+A+  F+  R
Sbjct: 345 NTTVLNAAASLYAKCSRVADASRVFSSIPCKDAVSWNAIVSAYAKQGLFRDAI--FLS-R 401

Query: 345 QEKTDSV--DSITLVSILTASGELA---------ALEICLQLHGIAFEAGFPRYRSVQNC 393
           Q + +    D IT ++IL +  + A         +L    Q+H      G      + N 
Sbjct: 402 QMQVEGFVPDDITFITILYSCSQSALLKQYGNSKSLTDGRQVHSQMISNGLDGDTYLGNL 461

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           L+  Y +CG++D A   F+ +   R+V SW  +I     NG     L L   M   G   
Sbjct: 462 LVQMYGRCGSLDDARAAFQGI-HQRNVFSWTILISLLVQNGEASEGLELLKSMDLEGTEA 520

Query: 454 DSSTYLSILNACGHAGLTNDGLVIFNQM 481
           +  T++S+L AC   G  + G  I  ++
Sbjct: 521 NKITFISLLGACSVTGDLSLGKTIHERI 548



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 127/497 (25%), Positives = 226/497 (45%), Gaps = 52/497 (10%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + L+  Y + G + +A   F  I ++NV SW+I+I     NG   + ++    M 
Sbjct: 455 DTYLGNLLVQMYGRCGSLDDARAAFQGIHQRNVFSWTILISLLVQNGEASEGLELLKSMD 514

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------- 106
           L G   N  T + +L A +   +L L ++IH  +   GLESD+                 
Sbjct: 515 LEGTEANKITFISLLGACSVTGDLSLGKTIHERIRTKGLESDIITSNALLNMYTTCESLD 574

Query: 107 -----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                FE +    +VS   I++ + +     +A+ L+         P+AVT+++V+  C 
Sbjct: 575 EARLVFERMVFRDVVSWTIIISAYAHAGYPLEALQLYRRMEQEFSRPDAVTLISVLEACA 634

Query: 162 ALGSRALCE--LIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           +L  RAL E   IH   +  G+  DV V  +V+  Y     ++ A Q+F  +  KD++ W
Sbjct: 635 SL--RALVEGKAIHERIVASGVETDVFVGTAVVSFYGKCEAVEDARQVFDRILDKDIVCW 692

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
             M+G +        A  ++ EM ++++  + V L+ L+   +    ++RG  LH +   
Sbjct: 693 NAMIGAYAQNHCEEKAFALYLEMVENQMPPNDVTLITLLDSCSSTCKMERGSSLHREAAA 752

Query: 280 GGLQSELRLSNSIIAMYSK-CGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
            G  S   + N++I MY+K CG+L+++++ F  +  K++VSW++I++ Y +NG    A N
Sbjct: 753 RGYLSHTSVVNALINMYAKCCGNLEAAQTAFESVASKNVVSWSSIVAAYARNGEEDRARN 812

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ------- 391
            F  M Q+     + +T  S+L A              G+A E G+  + S+Q       
Sbjct: 813 LFWTMNQDGVLP-NIVTFTSVLHACSHA----------GLADE-GWSYFLSMQGDHHLEP 860

Query: 392 -----NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM 446
                 C+++  +K G V  A      M    D  +W +++    V+   E   AL  K 
Sbjct: 861 TPEHYGCMVNLLAKSGRVKQAASFMSAMPVQPDASAWRSLLGACEVHTDKEYG-ALAAKQ 919

Query: 447 TETGEVPDSSTYLSILN 463
               E  +S+ Y+ + N
Sbjct: 920 LLDAEPRNSAAYVLLYN 936



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 120/428 (28%), Positives = 195/428 (45%), Gaps = 11/428 (2%)

Query: 145 GLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAA 204
           G+  + +T+L  +  C ALG     + IH   +  GL   V ++NS++ MY     ++ A
Sbjct: 5   GVPGDEITLLNAVSACAALGDSLQGKQIHARILSSGLGASVLLSNSLVYMYGKCGSVEEA 64

Query: 205 IQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAIL 264
              F  M  +D+ISW  M+ ++   E    A++++   R      D V   +L++     
Sbjct: 65  RNAFDRMPERDLISWNAMITVYAQHECGKQAIQLYAYSRLEGTKPDEVTFASLLNACFAS 124

Query: 265 GDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAII 324
           GDLK G+ LH   +     S+  + N +I+MYS CG LD + +VF       + +WT +I
Sbjct: 125 GDLKFGRMLHEHFLGTSFVSDQIVCNGLISMYSDCGSLDDATAVFEWSFRPDVCTWTTVI 184

Query: 325 SGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGF 384
           + Y ++G    A   + KM QE   S + IT +++L     L  LE    +H +A  +G 
Sbjct: 185 AAYTRHGKLECAFATWSKMHQEGLRS-NEITFLTVLDTCSSLEVLETGKHVHRLALGSGL 243

Query: 385 PRYRSVQNCLISSYSKCG-NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALY 443
                ++N LIS Y KC  + D A  VF  +     V+SW+  I  YG   H E A+  +
Sbjct: 244 DFSLRMENSLISMYGKCSRHPDEAREVFLRIS-RPSVISWSAFIAAYG--QHWE-AIKTF 299

Query: 444 HKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLAR 503
             M   G  P+++T  S+L AC   G    G  I + ++       +         L A+
Sbjct: 300 ELMNLEGVKPNATTLTSVLRACATVGAHEQGRRI-HALVLAGPYTQNTTVLNAAASLYAK 358

Query: 504 AGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIK--IPGI 561
              ++DAS +    +       W A++S      G F+DA  L    Q +G +   I  I
Sbjct: 359 CSRVADASRVFSS-IPCKDAVSWNAIVSAYAKQ-GLFRDAIFLSRQMQVEGFVPDDITFI 416

Query: 562 SFLNSTSR 569
           + L S S+
Sbjct: 417 TILYSCSQ 424


>gi|449523810|ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g01510-like [Cucumis
           sativus]
          Length = 816

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 164/548 (29%), Positives = 279/548 (50%), Gaps = 24/548 (4%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           ++S + K GK+ +A  LFD + E+  VSW+I+I GY  +   +++ + ++ M   G+ P+
Sbjct: 80  MISGHLKFGKLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPD 139

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE----------------------SDLFE 108
             T+V +L     L+   +   IH  ++K G E                      S LF+
Sbjct: 140 YVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFK 199

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            + N   V+ N+++ G+ N  L ++A+ LF     SG+ P+  T   ++   V L     
Sbjct: 200 HMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKF 259

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
            + +HG  +K   + +V V N++LD YS    +D   ++F EM   D IS+  ++  +  
Sbjct: 260 GQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFXEMPELDGISYNVVITSYAW 319

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
                ++  +FR+++ +R          L+S+     +L+ G+Q+H Q +  G   E R+
Sbjct: 320 NGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRV 379

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
            N+++ MY+KC     ++ +F+ I  KS V WTA+IS YVQ G   E +N F  MR+   
Sbjct: 380 ENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGV 439

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
            + D  T  SIL A   LA++ +  QLH +   +GF       + L+ +Y+KCG +  A 
Sbjct: 440 PA-DQATFASILRACANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAI 498

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
             F EM   R+ VSWN +I  Y  NG+ +  L  + +M ++G  PDS ++LS+L+AC H 
Sbjct: 499 KSFGEMP-ERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSACSHC 557

Query: 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRA 528
           G   + L  FN M +  +V P +EHY  +VD+L R G   +A  L  ++       +W +
Sbjct: 558 GFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFDEAEKLMTEMPFEPSEIMWSS 617

Query: 529 LLSGCVLH 536
           +L+ C +H
Sbjct: 618 VLNSCRIH 625



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 113/488 (23%), Positives = 226/488 (46%), Gaps = 36/488 (7%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+  Y K+  +  A  LF  +  K+ V+++ ++ GYS  G +E++++ F  +  SG+ P+
Sbjct: 181 LVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPS 240

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--------------------L 110
            FT   +L AA GL + +  + +HG ++K     ++F G                     
Sbjct: 241 DFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFX 300

Query: 111 KNPYL--VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
           + P L  +S N ++  +  N  F+++  LF   + +          T++    +  +  +
Sbjct: 301 EMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRM 360

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
              IH   I +G   +  V N+++DMY+       A +IF  + CK  + WT M+  +V 
Sbjct: 361 GRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQ 420

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
                + + +F +MR++ +  D     +++   A L  +  G+QLH+ ++  G  S +  
Sbjct: 421 KGKHEEGINVFSDMRRTGVPADQATFASILRACANLASISLGRQLHSLLIRSGFMSNVYS 480

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
            ++++  Y+KCG +  +   F ++ E++ VSW A+IS Y QNG     LN F +M Q   
Sbjct: 481 GSALLDTYAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGY 540

Query: 349 DSVDSITLVSILTASGELAALEICL-------QLHGIAFEAGFPRYRSVQNCLISSYSKC 401
              DS++ +S+L+A      +E  L       Q++ +      P+ R     ++    + 
Sbjct: 541 KP-DSVSFLSVLSACSHCGFVEEALWHFNSMTQIYEVT-----PK-REHYTSMVDVLCRN 593

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G  D A  +  EM F    + W++++    ++ + E A     ++    ++ D++ Y+++
Sbjct: 594 GRFDEAEKLMTEMPFEPSEIMWSSVLNSCRIHKNHELAKKAADRLFNMEDLRDAAPYINM 653

Query: 462 LNACGHAG 469
            N    AG
Sbjct: 654 SNIYAVAG 661



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 131/527 (24%), Positives = 238/527 (45%), Gaps = 64/527 (12%)

Query: 12  LSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNS 71
           ++N+ + G +  A  +FD++P KN +S +++I G+                         
Sbjct: 50  VNNFLERGDLVHAHQVFDQMPAKNTISLNMMISGH------------------------- 84

Query: 72  FTMVGVLVAAAGLQNLELARSIHGLMVKFGLES---DLFEGLKNPYLVSCNAIVAGFINN 128
                                     +KFG  S   +LF+G+     VS   ++ G++ +
Sbjct: 85  --------------------------LKFGKLSKARELFDGMVERTAVSWTILIGGYLQS 118

Query: 129 KLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVN 188
              ++A  L+   R  G+ P+ VT++T++ G   L ++ +   IH   IKLG   ++ V 
Sbjct: 119 NQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVC 178

Query: 189 NSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRII 248
           NS++D Y     L  A Q+F+ M  KD +++  +M  + +     +A+++F E+  S I 
Sbjct: 179 NSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIK 238

Query: 249 CDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSV 308
                   L+S    L D K G+Q+H  V+       + + N+++  YSK   +D    +
Sbjct: 239 PSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKL 298

Query: 309 FNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD--SVDSITLVSILTASGEL 366
           F ++ E   +S+  +I+ Y  NG  +E+ + F K++  + D       TL+SI T+S   
Sbjct: 299 FXEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSS--- 355

Query: 367 AALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTI 426
             L +  Q+H  A   G      V+N L+  Y+KC     A  +F+ +   +  V W  +
Sbjct: 356 LNLRMGRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQKIFDNIA-CKSTVPWTAM 414

Query: 427 IYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENK 486
           I  Y   G  E  + ++  M  TG   D +T+ SIL AC +    + G  + + +I    
Sbjct: 415 ISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLASISLGRQLHSLLIRSGF 474

Query: 487 VKPSQEHYG-CVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSG 532
           +  S  + G  ++D  A+ GC++DA    G++ E    + W AL+S 
Sbjct: 475 M--SNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVS-WNALISA 518



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 105/223 (47%), Gaps = 33/223 (14%)

Query: 273 LHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQ--------------------- 311
           + A +V  G       SN  +  + + GDL  +  VF+Q                     
Sbjct: 30  IDAHIVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGK 89

Query: 312 ----------ITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILT 361
                     + E++ VSWT +I GY+Q+  ++EA   +  MR+   +  D +TLV++L+
Sbjct: 90  LSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEP-DYVTLVTLLS 148

Query: 362 ASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVV 421
             GEL    + +Q+H    + G+     V N L+ +Y K   + LA  +F+ M   +D V
Sbjct: 149 GFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHM-LNKDTV 207

Query: 422 SWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           ++N+++ GY   G  E A+ L+ ++  +G  P   T+ ++L+A
Sbjct: 208 TFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSA 250


>gi|222635654|gb|EEE65786.1| hypothetical protein OsJ_21486 [Oryza sativa Japonica Group]
          Length = 749

 Score =  276 bits (705), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 170/529 (32%), Positives = 278/529 (52%), Gaps = 30/529 (5%)

Query: 34  KNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSI 93
           +N VSW+ VI  +  NG    ++  FS M+ SG   + F +   + A   L ++   R +
Sbjct: 98  RNPVSWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELGDVGTGRQV 157

Query: 94  HGLMVKFGLESDL----------------------FEGLKNPYLVSCNAIVAGFINNKLF 131
           H   +K    SDL                      FE +K+  L+S  +I+AGF      
Sbjct: 158 HAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIAGFAQQGFE 217

Query: 132 QQAVLLFN--FFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNN 189
            +A+ +F      GS   PN     +  R C A+GS    E IHGL+IK  L  D+ V  
Sbjct: 218 MEALQVFREMIVEGSHH-PNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLDRDLYVGC 276

Query: 190 SVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIIC 249
           S+ DMY+   +LD+A   F  +E  D++SW  ++  +       +AL +F EMR S +  
Sbjct: 277 SLSDMYARCKNLDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLRP 336

Query: 250 DTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVF 309
           D + +  L+        L  G+ +H+ +V  GL  ++ + NS+++MY++C DL S+  VF
Sbjct: 337 DGITVRGLLCACVGRDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSAMDVF 396

Query: 310 NQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAAL 369
           ++I ++ +V+W +I++   Q+    E L  F  + + +  S+D I+L ++L+AS EL   
Sbjct: 397 HEIKDQDVVTWNSILTACAQHNHPEEVLKLFSLLNKSEP-SLDRISLNNVLSASAELGYF 455

Query: 370 EICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYG 429
           E+  Q+H  AF+AG    R + N LI +Y+KCG++D A  +FE MG  RDV SW+++I G
Sbjct: 456 EMVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSLIVG 515

Query: 430 YGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKP 489
           Y   G+ + A  L+ +M   G  P+  T++ +L AC   G  N+G   ++ M  E  + P
Sbjct: 516 YAQFGYAKEAFDLFSRMRSLGIRPNHVTFIGVLTACSRVGFVNEGCYYYSIMEPEYGIVP 575

Query: 490 SQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI--WRALLSGCVLH 536
           ++EH  C+VDLLARAG L++A+    ++     P+I  W+ LL+   +H
Sbjct: 576 TREHCSCIVDLLARAGKLTEAANFIDQM--PFEPDIIMWKTLLAASKMH 622



 Score =  218 bits (554), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 133/442 (30%), Positives = 230/442 (52%), Gaps = 26/442 (5%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSG-LLP 69
           L++ Y K+G + +   LF+ I +K+++SW  +I G++  GF  ++++ F  M++ G   P
Sbjct: 176 LVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIAGFAQQGFEMEALQVFREMIVEGSHHP 235

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG-------------------- 109
           N F       A   + + E    IHGL +K+ L+ DL+ G                    
Sbjct: 236 NEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARCKNLDSARVAF 295

Query: 110 --LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRA 167
             ++ P LVS N+IV  +    L  +A++LF+  R SGL P+ +T+  ++  CV   +  
Sbjct: 296 YRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALY 355

Query: 168 LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
              LIH   +KLGL  DVSV NS+L MY+   DL +A+ +F E++ +DV++W  ++    
Sbjct: 356 HGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQDVVTWNSILTACA 415

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
              +  + LK+F  + KS    D ++L N++S +A LG  +  KQ+HA     GL  +  
Sbjct: 416 QHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKAGLVDDRM 475

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQI-TEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
           LSN++I  Y+KCG LD +  +F  +   + + SW+++I GY Q G A+EA + F +MR  
Sbjct: 476 LSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSLIVGYAQFGYAKEAFDLFSRMRSL 535

Query: 347 KTDSVDSITLVSILTASGELAAL-EICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
                + +T + +LTA   +  + E C     +  E G    R   +C++   ++ G + 
Sbjct: 536 GIRP-NHVTFIGVLTACSRVGFVNEGCYYYSIMEPEYGIVPTREHCSCIVDLLARAGKLT 594

Query: 406 LAYIVFEEMGFLRDVVSWNTII 427
            A    ++M F  D++ W T++
Sbjct: 595 EAANFIDQMPFEPDIIMWKTLL 616



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 92/411 (22%), Positives = 184/411 (44%), Gaps = 33/411 (8%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y    L   Y +   +  A   F  I   ++VSW+ +++ YS+ G   +++  FS M 
Sbjct: 271 DLYVGCSLSDMYARCKNLDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMR 330

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES------------------- 104
            SGL P+  T+ G+L A  G   L   R IH  +VK GL+                    
Sbjct: 331 DSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLS 390

Query: 105 ---DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
              D+F  +K+  +V+ N+I+     +   ++ + LF+    S    + +++  V+    
Sbjct: 391 SAMDVFHEIKDQDVVTWNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASA 450

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM-ECKDVISWT 220
            LG   + + +H    K GL+ D  ++N+++D Y+    LD A+++F  M   +DV SW+
Sbjct: 451 ELGYFEMVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWS 510

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++  +  F YA +A  +F  MR   I  + V  + +++  + +G +  G   ++ +   
Sbjct: 511 SLIVGYAQFGYAKEAFDLFSRMRSLGIRPNHVTFIGVLTACSRVGFVNEGCYYYSIMEPE 570

Query: 281 -GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISGYVQNG---CARE 335
            G+       + I+ + ++ G L  + +  +Q+  E  ++ W  +++    +      + 
Sbjct: 571 YGIVPTREHCSCIVDLLARAGKLTEAANFIDQMPFEPDIIMWKTLLAASKMHNDMEMGKR 630

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASG---ELAALEICLQLHGIAFEAG 383
           A    + +  + + S   + L +I  ASG   E A L+  ++  G+    G
Sbjct: 631 AAEGILNI--DPSHSAAYVLLCNIYAASGNWNEFARLKKAMRTSGVKKSPG 679


>gi|356544234|ref|XP_003540559.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Glycine max]
          Length = 916

 Score =  276 bits (705), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 181/617 (29%), Positives = 301/617 (48%), Gaps = 61/617 (9%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y +S L++ Y K     +A  +FD I +KN++ W+ ++  YS NGF    M+ F  M+  
Sbjct: 253 YVASSLINMYGKCQMPDDARQVFDAISQKNMIVWNAMLGVYSQNGFLSNVMELFLDMISC 312

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF------------------ 107
           G+ P+ FT   +L   A  + LE+ R +H  ++K    S+LF                  
Sbjct: 313 GIHPDEFTYTSILSTCACFEYLEVGRQLHSAIIKKRFTSNLFVNNALIDMYAKAGALKEA 372

Query: 108 ----EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
               E +     +S NAI+ G++  ++   A  LF      G+VP+ V++ +++  C  +
Sbjct: 373 GKHFEHMTYRDHISWNAIIVGYVQEEVEAGAFSLFRRMILDGIVPDEVSLASILSACGNI 432

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
                 +  H L++KLGL  ++   +S++DMYS   D+  A + +  M  + V+S   ++
Sbjct: 433 KVLEAGQQFHCLSVKLGLETNLFAGSSLIDMYSKCGDIKDAHKTYSSMPERSVVSVNALI 492

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL- 282
             +   +   +++ +  EM+   +    +   +LI V      +  G Q+H  +V  GL 
Sbjct: 493 AGYA-LKNTKESINLLHEMQILGLKPSEITFASLIDVCKGSAKVILGLQIHCAIVKRGLL 551

Query: 283 -QSELRLSNSIIAMYSKCGDLDSSRSVFNQITE-KSLVSWTAIISGYVQNGCAREALNQF 340
             SE  L  S++ MY     L  +  +F++ +  KS+V WTA+ISG++QN C+  ALN +
Sbjct: 552 CGSEF-LGTSLLGMYMDSQRLADANILFSEFSSLKSIVMWTALISGHIQNECSDVALNLY 610

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            +MR     S D  T V++L A   L++L    ++H + F  GF       + L+  Y+K
Sbjct: 611 REMRDNNI-SPDQATFVTVLQACALLSSLHDGREIHSLIFHTGFDLDELTSSALVDMYAK 669

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CG+V  +  VFEE+   +DV+SWN++I G+  NG+ + AL ++ +MT++   PD  T+L 
Sbjct: 670 CGDVKSSVQVFEELATKKDVISWNSMIVGFAKNGYAKCALKVFDEMTQSCITPDDVTFLG 729

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           +L AC HAG   +G  IF+ M+    ++P  +HY C+VDLL R G L +A     KL   
Sbjct: 730 VLTACSHAGWVYEGRQIFDVMVNYYGIEPRVDHYACMVDLLGRWGFLKEAEEFIDKLEVE 789

Query: 521 MGPNIWRALLSGCVLH---------------------------------VGRFQDAEALR 547
               IW  LL  C +H                                  G + +A +LR
Sbjct: 790 PNAMIWANLLGACRIHGDEKRGQRAAKKLIELEPQSSSPYVLLSNMYAASGNWDEARSLR 849

Query: 548 SGSQKKGIIKIPGISFL 564
               KK I KIPG S++
Sbjct: 850 RTMIKKDIQKIPGCSWI 866



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 130/448 (29%), Positives = 205/448 (45%), Gaps = 64/448 (14%)

Query: 53  EKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES-------- 104
           E+ ++ ++  M SG  P+ FT    L A A LQNL L R++H  ++K GLES        
Sbjct: 29  ERVLQFYASFMNSGHSPDQFTFAVTLSACAKLQNLHLGRAVHSCVIKSGLESTSFCQGAL 88

Query: 105 --------------DLFEGLKNPYL--VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVP 148
                          +F     P+L  VS  A+++G++   L  +A+ +F+  R S  VP
Sbjct: 89  IHLYAKCNSLTCARTIFASAPFPHLHTVSWTALISGYVQAGLPHEALHIFDKMRNSA-VP 147

Query: 149 NAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIF 208
           + V ++TV+   ++LG                                    LD A Q+F
Sbjct: 148 DQVALVTVLNAYISLGK-----------------------------------LDDACQLF 172

Query: 209 REM--ECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGD 266
           ++M    ++V++W  M+       +  +AL  F +M K  +      L +++S  A L  
Sbjct: 173 QQMPIPIRNVVAWNVMISGHAKTAHYEEALAFFHQMSKHGVKSSRSTLASVLSAIASLAA 232

Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISG 326
           L  G  +HA  +  G +S + +++S+I MY KC   D +R VF+ I++K+++ W A++  
Sbjct: 233 LNHGLLVHAHAIKQGFESSIYVASSLINMYGKCQMPDDARQVFDAISQKNMIVWNAMLGV 292

Query: 327 YVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPR 386
           Y QNG     +  F+ M        D  T  SIL+       LE+  QLH    +  F  
Sbjct: 293 YSQNGFLSNVMELFLDMISCGIHP-DEFTYTSILSTCACFEYLEVGRQLHSAIIKKRFTS 351

Query: 387 YRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM 446
              V N LI  Y+K G +  A   FE M + RD +SWN II GY        A +L+ +M
Sbjct: 352 NLFVNNALIDMYAKAGALKEAGKHFEHMTY-RDHISWNAIIVGYVQEEVEAGAFSLFRRM 410

Query: 447 TETGEVPDSSTYLSILNACGHAGLTNDG 474
              G VPD  +  SIL+ACG+  +   G
Sbjct: 411 ILDGIVPDEVSLASILSACGNIKVLEAG 438



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 139/526 (26%), Positives = 246/526 (46%), Gaps = 21/526 (3%)

Query: 11  LLSNYFKSGKIKEAENLFDE--IPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           L+  Y K   +  A  +F     P  + VSW+ +I GY   G   +++  F  M  S + 
Sbjct: 88  LIHLYAKCNSLTCARTIFASAPFPHLHTVSWTALISGYVQAGLPHEALHIFDKMRNSAV- 146

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPY--LVSCNAIVAGFI 126
           P+   +V VL A   L  L+ A               LF+ +  P   +V+ N +++G  
Sbjct: 147 PDQVALVTVLNAYISLGKLDDA-------------CQLFQQMPIPIRNVVAWNVMISGHA 193

Query: 127 NNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVS 186
               +++A+  F+     G+  +  T+ +V+    +L +     L+H   IK G    + 
Sbjct: 194 KTAHYEEALAFFHQMSKHGVKSSRSTLASVLSAIASLAALNHGLLVHAHAIKQGFESSIY 253

Query: 187 VNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSR 246
           V +S+++MY      D A Q+F  +  K++I W  M+G++    +  + +++F +M    
Sbjct: 254 VASSLINMYGKCQMPDDARQVFDAISQKNMIVWNAMLGVYSQNGFLSNVMELFLDMISCG 313

Query: 247 IICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSR 306
           I  D     +++S  A    L+ G+QLH+ ++     S L ++N++I MY+K G L  + 
Sbjct: 314 IHPDEFTYTSILSTCACFEYLEVGRQLHSAIIKKRFTSNLFVNNALIDMYAKAGALKEAG 373

Query: 307 SVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGEL 366
             F  +T +  +SW AII GYVQ      A + F +M  +     D ++L SIL+A G +
Sbjct: 374 KHFEHMTYRDHISWNAIIVGYVQEEVEAGAFSLFRRMILDGIVP-DEVSLASILSACGNI 432

Query: 367 AALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTI 426
             LE   Q H ++ + G        + LI  YSKCG++  A+  +  M   R VVS N +
Sbjct: 433 KVLEAGQQFHCLSVKLGLETNLFAGSSLIDMYSKCGDIKDAHKTYSSMP-ERSVVSVNAL 491

Query: 427 IYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENK 486
           I GY +    E+ + L H+M   G  P   T+ S+++ C  +     GL I   +++   
Sbjct: 492 IAGYALKNTKES-INLLHEMQILGLKPSEITFASLIDVCKGSAKVILGLQIHCAIVKRGL 550

Query: 487 VKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSG 532
           +  S+     ++ +   +  L+DA+ L  +        +W AL+SG
Sbjct: 551 LCGSEFLGTSLLGMYMDSQRLADANILFSEFSSLKSIVMWTALISG 596


>gi|222616424|gb|EEE52556.1| hypothetical protein OsJ_34807 [Oryza sativa Japonica Group]
          Length = 1215

 Score =  276 bits (705), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 170/556 (30%), Positives = 284/556 (51%), Gaps = 33/556 (5%)

Query: 8    SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
            ++ L++ +   G++ +AE LFD + E + +SW+ +I  YS  G   K    FS M   GL
Sbjct: 485  ANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGL 544

Query: 68   LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
             P++ T+  ++   A   +      IH L ++  L+S                       
Sbjct: 545  RPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEF 604

Query: 106  LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
            LF  +    L+S N +++ ++ N     A+        +   PN +T  + +  C + G+
Sbjct: 605  LFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSSPGA 664

Query: 166  RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
                +++H + ++L L  ++ V NS++ MY     ++ A ++F+ M   D++S+  ++G 
Sbjct: 665  LIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDIVSYNVLIGG 724

Query: 226  FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKR-GKQLHAQVVLGGLQS 284
            +   E    A+++F  MR + I  + + ++N+    A   DL   G+ LHA ++  G  S
Sbjct: 725  YAVLEDGTKAMQVFSWMRSAGIKPNYITMINIHGSFASSNDLHNYGRPLHAYIIRTGFLS 784

Query: 285  ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
            +  ++NS+I MY+KCG+L+SS ++FN IT K++VSW AII+  VQ G   EAL  FI M 
Sbjct: 785  DEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANVQLGHGEEALKLFIDM- 843

Query: 345  QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
            Q   + +D + L   L++   LA+LE  +QLHG+  ++G      V N  +  Y KCG +
Sbjct: 844  QHAGNKLDRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKM 903

Query: 405  DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
            D    V  +   +R    WNT+I GY   G+ + A   + +M  TG  PD  T++++L+A
Sbjct: 904  DEMLQVVPDQA-IRPQQCWNTLISGYAKYGYFKEAEETFKQMVATGRKPDYVTFVALLSA 962

Query: 465  CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMG-- 522
            C HAGL + G+  +N M     V P  +H  C+VDLL R G  ++A     K +E M   
Sbjct: 963  CSHAGLVDKGIDYYNSMASSFGVSPGIKHCVCIVDLLGRLGRFAEAE----KFIEEMPVL 1018

Query: 523  PN--IWRALLSGCVLH 536
            PN  IWR+LLS    H
Sbjct: 1019 PNDLIWRSLLSSSRTH 1034



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 126/499 (25%), Positives = 221/499 (44%), Gaps = 33/499 (6%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAE---NLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAF 59
           +  ++ + LL+ YF+      A    +LFDE+ ++   +W   + G    G H K+ +  
Sbjct: 272 LSAFHRNTLLAFYFRQRDASAAAAALHLFDEMADRTPSTWYTAVSGCVRCGSHGKAFEML 331

Query: 60  SHMMLSGLLPNSFTMVGVLVAAAGL---QNLELARSIHGLMVKFGLESDLFEG------- 109
             M   G+  + F +  ++ A       + +    +IH L  + GL  +++ G       
Sbjct: 332 RGMREPGVPLSGFALASLVTACERRGRDEGIACGAAIHALTHRAGLMGNVYIGTALLHLY 391

Query: 110 ---------------LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTML 154
                          +    +VS  A++    +N   ++A+  +   R  G+  NA    
Sbjct: 392 GSRGIVSDAQRLFWEMPERNVVSWTALMVALSSNGYLEEALRAYRQMRRDGVPCNANAFA 451

Query: 155 TVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
           TV+  C +L +      +    I  GL   VSV NS++ M+  L  +  A ++F  ME  
Sbjct: 452 TVVSLCGSLENEVPGLQVASQVIVSGLQNQVSVANSLITMFGNLGRVHDAEKLFDRMEEH 511

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
           D ISW  M+ ++           +F +MR   +  D   L +L+SV A       G  +H
Sbjct: 512 DTISWNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASSDHFSHGSGIH 571

Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
           +  +   L S + + N+++ MYS  G L  +  +F  ++ + L+SW  +IS YVQN  + 
Sbjct: 572 SLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDLISWNTMISSYVQNCNST 631

Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
           +AL    ++     +S + +T  S L A     AL     +H I  +    R   V N L
Sbjct: 632 DALKTLGQLFH-TNESPNHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSL 690

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           I+ Y KC +++ A  VF+ M    D+VS+N +I GY V   G  A+ ++  M   G  P+
Sbjct: 691 ITMYGKCNSMEDAEKVFQSMP-THDIVSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPN 749

Query: 455 SSTYLSILNACGHAGLTND 473
              Y++++N  G    +ND
Sbjct: 750 ---YITMINIHGSFASSND 765



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 112/475 (23%), Positives = 214/475 (45%), Gaps = 29/475 (6%)

Query: 11   LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
            L++ Y  +GK+ +AE LF  +  ++++SW+ +I  Y  N     ++K    +  +   PN
Sbjct: 589  LVNMYSAAGKLSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPN 648

Query: 71   SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------------FE 108
              T    L A +    L   + +H ++++  L+ +L                      F+
Sbjct: 649  HLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQ 708

Query: 109  GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS--R 166
             +    +VS N ++ G+   +   +A+ +F++ R +G+ PN +TM+  I G  A  +   
Sbjct: 709  SMPTHDIVSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMIN-IHGSFASSNDLH 767

Query: 167  ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
                 +H   I+ G + D  V NS++ MY+   +L+++  IF  +  K+++SW  ++   
Sbjct: 768  NYGRPLHAYIIRTGFLSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAAN 827

Query: 227  VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
            V   +  +ALK+F +M+ +    D V L   +S  A L  L+ G QLH   +  GL S+ 
Sbjct: 828  VQLGHGEEALKLFIDMQHAGNKLDRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDS 887

Query: 287  RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
             + N+ + MY KCG +D    V      +    W  +ISGY + G  +EA   F +M   
Sbjct: 888  YVVNAAMDMYGKCGKMDEMLQVVPDQAIRPQQCWNTLISGYAKYGYFKEAEETFKQMVAT 947

Query: 347  KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN--CLISSYSKCGNV 404
                 D +T V++L+A      ++  +  +  +  + F     +++  C++    + G  
Sbjct: 948  GRKP-DYVTFVALLSACSHAGLVDKGIDYYN-SMASSFGVSPGIKHCVCIVDLLGRLGRF 1005

Query: 405  DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
              A    EEM  L + + W +++     + + E       K+ E     DS+  L
Sbjct: 1006 AEAEKFIEEMPVLPNDLIWRSLLSSSRTHKNLEIGRKTAKKLLELDPFDDSAYVL 1060



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 84/183 (45%), Gaps = 22/183 (12%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y ++ L++ Y K G ++ + N+F+ I  KN+VSW+ +I      G  E+++K F  M 
Sbjct: 785 DEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANVQLGHGEEALKLFIDMQ 844

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFE-----------GLKN 112
            +G   +   +   L + A L +LE    +HGL +K GL+SD +            G  +
Sbjct: 845 HAGNKLDRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMD 904

Query: 113 PYL----------VSC-NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
             L            C N +++G+     F++A   F     +G  P+ VT + ++  C 
Sbjct: 905 EMLQVVPDQAIRPQQCWNTLISGYAKYGYFKEAEETFKQMVATGRKPDYVTFVALLSACS 964

Query: 162 ALG 164
             G
Sbjct: 965 HAG 967



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 113/251 (45%), Gaps = 16/251 (6%)

Query: 290 NSIIAMYSKCGDLDSSRS---VFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
           N+++A Y +  D  ++ +   +F+++ +++  +W   +SG V+ G   +A      MR E
Sbjct: 278 NTLLAFYFRQRDASAAAAALHLFDEMADRTPSTWYTAVSGCVRCGSHGKAFEMLRGMR-E 336

Query: 347 KTDSVDSITLVSILTA---SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
               +    L S++TA    G    +     +H +   AG      +   L+  Y   G 
Sbjct: 337 PGVPLSGFALASLVTACERRGRDEGIACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGI 396

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           V  A  +F EM   R+VVSW  ++     NG+ E AL  Y +M   G   +++ + ++++
Sbjct: 397 VSDAQRLFWEMP-ERNVVSWTALMVALSSNGYLEEALRAYRQMRRDGVPCNANAFATVVS 455

Query: 464 ACGHAGLTNDGLVIFNQMIE---ENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
            CG       GL + +Q+I    +N+V  +      ++ +    G + DA  L  + +E 
Sbjct: 456 LCGSLENEVPGLQVASQVIVSGLQNQVSVANS----LITMFGNLGRVHDAEKLFDR-MEE 510

Query: 521 MGPNIWRALLS 531
                W A++S
Sbjct: 511 HDTISWNAMIS 521


>gi|147794059|emb|CAN66615.1| hypothetical protein VITISV_022030 [Vitis vinifera]
          Length = 818

 Score =  275 bits (704), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 179/586 (30%), Positives = 298/586 (50%), Gaps = 32/586 (5%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  S L+  Y ++G I +A  LFD +P K+ V W+++++GY  NG  + +   F  M
Sbjct: 180 LDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEM 239

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
             +   PNS T   VL   A    +     +HGL+V  GLE D                 
Sbjct: 240 RRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHL 299

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                LF+ +    LV+ N +++G++ N    +A  LF+    +G+ P+++T  + +   
Sbjct: 300 FDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISAGMKPDSITFSSFLPLL 359

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
               +    + IH   I+ G+ LDV + ++++D+Y    D++ A +IF +    D++  T
Sbjct: 360 SEGATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMAHKIFDQRTPVDIVVCT 419

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+  +V      +AL+IFR + + R+  ++V L +++   A L  L  GK+LH  ++  
Sbjct: 420 AMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKN 479

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           G      + ++I+ MY+KCG LD +   F  I+ K  V W ++I+   QNG   EA++ F
Sbjct: 480 GHGGSCYVGSAIMDMYAKCGKLDLAHQTFIGISXKDAVCWNSMITSCSQNGKPEEAIDLF 539

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            +M    T   D +++ + L+A   L AL    ++H       F      ++ LI  YSK
Sbjct: 540 RQMGMAGT-KYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSK 598

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CGN+DLA  VF+ M   ++ VSWN+II  YG +G  + +L L+H M   G  PD  T+L+
Sbjct: 599 CGNLDLACRVFDMME-EKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLA 657

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           I++ACGHAG  ++G+  F  M EE  +    EHY C+VDL  RAG L++A G+   +   
Sbjct: 658 IISACGHAGQVDEGIHYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFS 717

Query: 521 MGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGII---KIPGISF 563
               +W     G  L +  F +  +L+   Q+  +I   KIP I +
Sbjct: 718 PDAGVW-----GLYLELVDFMEMLSLQKWHQEIYLIWIHKIPDIMY 758



 Score =  198 bits (503), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 151/569 (26%), Positives = 274/569 (48%), Gaps = 27/569 (4%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           +KLL  Y   G   +A+N+F ++       W+ +I G+++ G  + ++  +  M+  G L
Sbjct: 85  TKLLGMYVLCGAFLDAKNIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTL 144

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG------------------- 109
           P+ +T   V+ A  GL ++ L R +H  +   G E D+F G                   
Sbjct: 145 PDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYL 204

Query: 110 ---LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
              + +   V  N ++ G++ N  +  A  +F   R +   PN+VT   V+  C +    
Sbjct: 205 FDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMI 264

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
                +HGL +  GL +D  V N++L MY+    L  A ++F  M   D+++W  M+  +
Sbjct: 265 NFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGY 324

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
           V   +  +A  +F EM  + +  D++   + + + +    L++GK++H  ++  G+  ++
Sbjct: 325 VQNGFMDEASCLFHEMISAGMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDV 384

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            L +++I +Y KC D++ +  +F+Q T   +V  TA+ISGYV NG    AL  F  + QE
Sbjct: 385 FLKSALIDIYFKCRDVEMAHKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQE 444

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
           +  + +S+TL S+L A   LAAL +  +LHG   + G      V + ++  Y+KCG +DL
Sbjct: 445 RMRA-NSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGKLDL 503

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           A+  F  +   +D V WN++I     NG  E A+ L+ +M   G   D  +  + L+AC 
Sbjct: 504 AHQTFIGIS-XKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACA 562

Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIW 526
           +    + G  I   M+     +        ++D+ ++ G L D +     ++E      W
Sbjct: 563 NLPALHYGKEIHAFMM-RGAFRSDLFAESALIDMYSKCGNL-DLACRVFDMMEEKNEVSW 620

Query: 527 RALLSGCVLHVGRFQDAEALRSGSQKKGI 555
            ++++    H GR +D+  L  G    GI
Sbjct: 621 NSIIAAYGNH-GRLKDSLNLFHGMLGDGI 648



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 97/356 (27%), Positives = 166/356 (46%), Gaps = 19/356 (5%)

Query: 114 YLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIH 173
           +L S    +  F  N +     L F+      L P  V++L   + C      +     H
Sbjct: 13  FLPSTTFKLKSFHTNSINIGKPLQFSIHNDDSLAPQLVSIL---QTCTDPSGLSHGRQAH 69

Query: 174 GLTIKLGLILDVSVNNSVLDMYS-CLMDLDAAIQIFREME--CKDVISWT----RMMGLF 226
              +  G+  +  +   +L MY  C   LDA   IF ++   C +  +W      MMG F
Sbjct: 70  AQMLVNGIGYNGILGTKLLGMYVLCGAFLDAK-NIFYQLRLWCSEPWNWMIRGFTMMGQF 128

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
            DF     AL  + +M     + D      +I     L  +  G+ +H ++   G + ++
Sbjct: 129 -DF-----ALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELDV 182

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            + +S+I  YS+ G +  +R +F+++  K  V W  +++GYV+NG    A   F++MR+ 
Sbjct: 183 FVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRT 242

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
           +T+  +S+T   +L+       +    QLHG+   +G      V N L++ Y+KCG++  
Sbjct: 243 ETNP-NSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFD 301

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
           A  +F+ M    D+V+WN +I GY  NG  + A  L+H+M   G  PDS T+ S L
Sbjct: 302 ARRLFDMMP-KTDLVTWNGMISGYVQNGFMDEASCLFHEMISAGMKPDSITFSSFL 356


>gi|449455116|ref|XP_004145299.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 722

 Score =  275 bits (704), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 184/626 (29%), Positives = 304/626 (48%), Gaps = 75/626 (11%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           +P  SSKL+  Y   G +  +  +F  + + N+  ++ ++   +  G  E+++  +  M+
Sbjct: 58  NPTLSSKLIDCYANLGLLNHSLQVFCSVIDPNLTLFNAILRNLTRYGESERTLLVYQQMV 117

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVA 123
              + P+  T   VL + +   N+   R+IHG +VK G   DLF+       V   A+  
Sbjct: 118 AKSMHPDEETYPFVLRSCSSFSNVGFGRTIHGYLVKLGF--DLFD-------VVATALAE 168

Query: 124 GFINNKLFQQAVLLFN-------------------------FFRGSG------LVPNAVT 152
            +     F+ A  LF+                          FR  G      LVP++ T
Sbjct: 169 MYEECIEFENAHQLFDKRSVKDLGWPSSLTTEGPQNDNGEGIFRVFGRMIAEQLVPDSFT 228

Query: 153 MLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME 212
              ++R    L S  L +++H + I   L  D+ VN +VL +YS L  L  A ++F +M 
Sbjct: 229 FFNLLRFIAGLNSIQLAKIVHCIAIVSKLSGDLLVNTAVLSLYSKLRSLVDARKLFDKMP 288

Query: 213 CKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQ 272
            KD + W  M+  +       + L++F+ M +S I  D    L +IS  A L  +  GKQ
Sbjct: 289 EKDRVVWNIMIAAYAREGKPTECLELFKSMARSGIRSDLFTALPVISSIAQLKCVDWGKQ 348

Query: 273 LHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC 332
            HA ++  G  S++ + NS+I MY +C  LDS+  +FN +T+KS++SW+A+I GYV+NG 
Sbjct: 349 THAHILRNGSDSQVSVHNSLIDMYCECKILDSACKIFNWMTDKSVISWSAMIKGYVKNGQ 408

Query: 333 AREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN 392
           +  AL+ F KM+ +   + D + +++IL A   + ALE    LHG + + G     S+  
Sbjct: 409 SLTALSLFSKMKSDGIQA-DFVIMINILPAFVHIGALENVKYLHGYSMKLGLTSLPSLNT 467

Query: 393 CLISSYSKCGNVDLAYIVFEEMGF-LRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE 451
            L+ +Y+KCG++++A  +FEE     +D++ WN++I  +  +G       LY++M  +  
Sbjct: 468 ALLITYAKCGSIEMAQRLFEEEKIDDKDLIMWNSMISAHANHGDWSQCFKLYNRMKCSNS 527

Query: 452 VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDAS 511
            PD  T+L +L AC ++GL   G   F +M E    +PSQEHY C+V+LL RAG +S+A 
Sbjct: 528 KPDQVTFLGLLTACVNSGLVEKGKEFFKEMTESYGCQPSQEHYACMVNLLGRAGLISEAG 587

Query: 512 GLAGKLLEGMGPNIWRALLSGCVLH---------------------------------VG 538
            L   +       +W  LLS C +H                                  G
Sbjct: 588 ELVKNMPIKPDARVWGPLLSACKMHPGSKLAEFAAEKLINMEPRNAGNYILLSNIYAAAG 647

Query: 539 RFQDAEALRSGSQKKGIIKIPGISFL 564
           ++     +RS  + KG+ KIPG S+L
Sbjct: 648 KWDGVAKMRSFLRNKGLKKIPGCSWL 673



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/293 (19%), Positives = 133/293 (45%), Gaps = 2/293 (0%)

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           IH   I  G   + ++++ ++D Y+ L  L+ ++Q+F  +   ++  +  ++     +  
Sbjct: 46  IHARFILHGFHQNPTLSSKLIDCYANLGLLNHSLQVFCSVIDPNLTLFNAILRNLTRYGE 105

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
           +   L ++++M    +  D      ++   +   ++  G+ +H  +V  G      ++ +
Sbjct: 106 SERTLLVYQQMVAKSMHPDEETYPFVLRSCSSFSNVGFGRTIHGYLVKLGFDLFDVVATA 165

Query: 292 IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
           +  MY +C + +++  +F++ + K L   +++ +   QN         F +M  E+    
Sbjct: 166 LAEMYEECIEFENAHQLFDKRSVKDLGWPSSLTTEGPQNDNGEGIFRVFGRMIAEQL-VP 224

Query: 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVF 411
           DS T  ++L     L ++++   +H IA  +       V   ++S YSK  ++  A  +F
Sbjct: 225 DSFTFFNLLRFIAGLNSIQLAKIVHCIAIVSKLSGDLLVNTAVLSLYSKLRSLVDARKLF 284

Query: 412 EEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           ++M   +D V WN +I  Y   G     L L+  M  +G   D  T L ++++
Sbjct: 285 DKMP-EKDRVVWNIMIAAYAREGKPTECLELFKSMARSGIRSDLFTALPVISS 336


>gi|77552605|gb|ABA95402.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 1000

 Score =  275 bits (704), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 170/556 (30%), Positives = 284/556 (51%), Gaps = 33/556 (5%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ L++ +   G++ +AE LFD + E + +SW+ +I  YS  G   K    FS M   GL
Sbjct: 183 ANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGL 242

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
            P++ T+  ++   A   +      IH L ++  L+S                       
Sbjct: 243 RPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEF 302

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           LF  +    L+S N +++ ++ N     A+        +   PN +T  + +  C + G+
Sbjct: 303 LFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSSPGA 362

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
               +++H + ++L L  ++ V NS++ MY     ++ A ++F+ M   D++S+  ++G 
Sbjct: 363 LIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDIVSYNVLIGG 422

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKR-GKQLHAQVVLGGLQS 284
           +   E    A+++F  MR + I  + + ++N+    A   DL   G+ LHA ++  G  S
Sbjct: 423 YAVLEDGTKAMQVFSWMRSAGIKPNYITMINIHGSFASSNDLHNYGRPLHAYIIRTGFLS 482

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           +  ++NS+I MY+KCG+L+SS ++FN IT K++VSW AII+  VQ G   EAL  FI M 
Sbjct: 483 DEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANVQLGHGEEALKLFIDM- 541

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
           Q   + +D + L   L++   LA+LE  +QLHG+  ++G      V N  +  Y KCG +
Sbjct: 542 QHAGNKLDRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKM 601

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           D    V  +   +R    WNT+I GY   G+ + A   + +M  TG  PD  T++++L+A
Sbjct: 602 DEMLQVVPDQA-IRPQQCWNTLISGYAKYGYFKEAEETFKQMVATGRKPDYVTFVALLSA 660

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMG-- 522
           C HAGL + G+  +N M     V P  +H  C+VDLL R G  ++A     K +E M   
Sbjct: 661 CSHAGLVDKGIDYYNSMASSFGVSPGIKHCVCIVDLLGRLGRFAEAE----KFIEEMPVL 716

Query: 523 PN--IWRALLSGCVLH 536
           PN  IWR+LLS    H
Sbjct: 717 PNDLIWRSLLSSSRTH 732



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 161/611 (26%), Positives = 279/611 (45%), Gaps = 52/611 (8%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y  + LL  Y   G + +A+ LF E+PE+NVVSW+ ++   S NG+ E++++A+  M   
Sbjct: 80  YIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTALMVALSSNGYLEEALRAYRQMRRD 139

Query: 66  GLL--PNSFTMV------------GVLVAA----AGLQN-LELARSIHGLMVKFGLESD- 105
           G+    N+F  V            G+ VA+    +GLQN + +A S+  +    G   D 
Sbjct: 140 GVPCNANAFATVVSLCGSLENEVPGLQVASQVIVSGLQNQVSVANSLITMFGNLGRVHDA 199

Query: 106 --LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
             LF+ ++    +S NA+++ + +  +  +  L+F+  R  GL P+A T+ +++  C + 
Sbjct: 200 EKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASS 259

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
              +    IH L ++  L   V+V N++++MYS    L  A  +F  M  +D+ISW  M+
Sbjct: 260 DHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDLISWNTMI 319

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
             +V    + DALK   ++  +    + +   + +   +  G L  GK +HA V+   LQ
Sbjct: 320 SSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQ 379

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
             L + NS+I MY KC  ++ +  VF  +    +VS+  +I GY       +A+  F  M
Sbjct: 380 RNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDIVSYNVLIGGYAVLEDGTKAMQVFSWM 439

Query: 344 RQE--KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           R    K + +  I +     +S +L        LH      GF     V N LI+ Y+KC
Sbjct: 440 RSAGIKPNYITMINIHGSFASSNDLH--NYGRPLHAYIIRTGFLSDEYVANSLITMYAKC 497

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           GN++ +  +F  +   +++VSWN II      GHGE AL L+  M   G   D       
Sbjct: 498 GNLESSTNIFNSITN-KNIVSWNAIIAANVQLGHGEEALKLFIDMQHAGNKLDRVCLAEC 556

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L++C       +G+ +    ++   +          +D+  + G + +   +     + +
Sbjct: 557 LSSCASLASLEEGMQLHGLGMKSG-LDSDSYVVNAAMDMYGKCGKMDEMLQVVPD--QAI 613

Query: 522 GP-NIWRALLSGCVLHVGRFQDAE-------------------ALRSGSQKKGIIKIPGI 561
            P   W  L+SG   + G F++AE                   AL S     G++   GI
Sbjct: 614 RPQQCWNTLISGYAKY-GYFKEAEETFKQMVATGRKPDYVTFVALLSACSHAGLVD-KGI 671

Query: 562 SFLNSTSRDFG 572
            + NS +  FG
Sbjct: 672 DYYNSMASSFG 682



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 112/475 (23%), Positives = 214/475 (45%), Gaps = 29/475 (6%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L++ Y  +GK+ +AE LF  +  ++++SW+ +I  Y  N     ++K    +  +   PN
Sbjct: 287 LVNMYSAAGKLSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPN 346

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------------FE 108
             T    L A +    L   + +H ++++  L+ +L                      F+
Sbjct: 347 HLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQ 406

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS--R 166
            +    +VS N ++ G+   +   +A+ +F++ R +G+ PN +TM+  I G  A  +   
Sbjct: 407 SMPTHDIVSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMIN-IHGSFASSNDLH 465

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
                +H   I+ G + D  V NS++ MY+   +L+++  IF  +  K+++SW  ++   
Sbjct: 466 NYGRPLHAYIIRTGFLSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAAN 525

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
           V   +  +ALK+F +M+ +    D V L   +S  A L  L+ G QLH   +  GL S+ 
Sbjct: 526 VQLGHGEEALKLFIDMQHAGNKLDRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDS 585

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            + N+ + MY KCG +D    V      +    W  +ISGY + G  +EA   F +M   
Sbjct: 586 YVVNAAMDMYGKCGKMDEMLQVVPDQAIRPQQCWNTLISGYAKYGYFKEAEETFKQMVAT 645

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN--CLISSYSKCGNV 404
                D +T V++L+A      ++  +  +  +  + F     +++  C++    + G  
Sbjct: 646 GRKP-DYVTFVALLSACSHAGLVDKGIDYYN-SMASSFGVSPGIKHCVCIVDLLGRLGRF 703

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
             A    EEM  L + + W +++     + + E       K+ E     DS+  L
Sbjct: 704 AEAEKFIEEMPVLPNDLIWRSLLSSSRTHKNLEIGRKTAKKLLELDPFDDSAYVL 758



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 113/403 (28%), Positives = 188/403 (46%), Gaps = 9/403 (2%)

Query: 75  VGVLVAAAGLQ-NLELARSIHGLMVKFGLESD---LFEGLKNPYLVSCNAIVAGFINNKL 130
           +  L   AGL  N+ +  ++  L    G+ SD   LF  +    +VS  A++    +N  
Sbjct: 66  IHALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTALMVALSSNGY 125

Query: 131 FQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNS 190
            ++A+  +   R  G+  NA    TV+  C +L +      +    I  GL   VSV NS
Sbjct: 126 LEEALRAYRQMRRDGVPCNANAFATVVSLCGSLENEVPGLQVASQVIVSGLQNQVSVANS 185

Query: 191 VLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICD 250
           ++ M+  L  +  A ++F  ME  D ISW  M+ ++           +F +MR   +  D
Sbjct: 186 LITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGLRPD 245

Query: 251 TVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFN 310
              L +L+SV A       G  +H+  +   L S + + N+++ MYS  G L  +  +F 
Sbjct: 246 ATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFW 305

Query: 311 QITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALE 370
            ++ + L+SW  +IS YVQN  + +AL    ++     +S + +T  S L A     AL 
Sbjct: 306 NMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFH-TNESPNHLTFSSALGACSSPGALI 364

Query: 371 ICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGY 430
               +H I  +    R   V N LI+ Y KC +++ A  VF+ M    D+VS+N +I GY
Sbjct: 365 DGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMP-THDIVSYNVLIGGY 423

Query: 431 GVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTND 473
            V   G  A+ ++  M   G  P+   Y++++N  G    +ND
Sbjct: 424 AVLEDGTKAMQVFSWMRSAGIKPN---YITMINIHGSFASSND 463



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 131/284 (46%), Gaps = 6/284 (2%)

Query: 233 GDALKIFREMRKSRIICDTVALLNLISVNAILGD---LKRGKQLHAQVVLGGLQSELRLS 289
           G A ++ R MR+  +     AL +L++     G    +  G  +HA     GL   + + 
Sbjct: 23  GTAFEMLRGMRERGVPLSGFALASLVTACERRGRDEGIACGAAIHALTHRAGLMGNVYIG 82

Query: 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD 349
            +++ +Y   G +  ++ +F ++ E+++VSWTA++     NG   EAL  + +MR++   
Sbjct: 83  TALLHLYGSRGIVSDAQRLFWEMPERNVVSWTALMVALSSNGYLEEALRAYRQMRRDGV- 141

Query: 350 SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYI 409
             ++    ++++  G L      LQ+      +G     SV N LI+ +   G V  A  
Sbjct: 142 PCNANAFATVVSLCGSLENEVPGLQVASQVIVSGLQNQVSVANSLITMFGNLGRVHDAEK 201

Query: 410 VFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAG 469
           +F+ M    D +SWN +I  Y   G       ++  M   G  PD++T  S+++ C  + 
Sbjct: 202 LFDRME-EHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASSD 260

Query: 470 LTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL 513
             + G  I + +   + +  S      +V++ + AG LSDA  L
Sbjct: 261 HFSHGSGI-HSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFL 303



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 84/183 (45%), Gaps = 22/183 (12%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y ++ L++ Y K G ++ + N+F+ I  KN+VSW+ +I      G  E+++K F  M 
Sbjct: 483 DEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANVQLGHGEEALKLFIDMQ 542

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFE-----------GLKN 112
            +G   +   +   L + A L +LE    +HGL +K GL+SD +            G  +
Sbjct: 543 HAGNKLDRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMD 602

Query: 113 PYL----------VSC-NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
             L            C N +++G+     F++A   F     +G  P+ VT + ++  C 
Sbjct: 603 EMLQVVPDQAIRPQQCWNTLISGYAKYGYFKEAEETFKQMVATGRKPDYVTFVALLSACS 662

Query: 162 ALG 164
             G
Sbjct: 663 HAG 665


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  275 bits (704), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 172/544 (31%), Positives = 279/544 (51%), Gaps = 31/544 (5%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYS-INGFHEKSMKAF 59
           P  +  +++ ++S Y KSG + EA  LFD + E+  V+W+I+I GYS +N F E + + F
Sbjct: 74  PHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKE-AFELF 132

Query: 60  SHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCN 119
             M   G  P+  T V +L    G +       +   ++K G +S L  G         N
Sbjct: 133 VQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVG---------N 183

Query: 120 AIVAGFINNKLFQQAVLLFNFFRGSGLVP--NAVTMLTVIRGCVALGSRALCELIHGLTI 177
            +V  +  +     A  LF        +P  ++ T   V+   + L    L + IH   I
Sbjct: 184 TLVDSYCKSNRLDLACQLFK------EMPEIDSFTFAAVLCANIGLDDIVLGQQIHSFVI 237

Query: 178 KLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGD--- 234
           K   + +V V+N++LD YS    +  A ++F EM  +D +S+  ++       YA D   
Sbjct: 238 KTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIIS-----GYAWDGKH 292

Query: 235 --ALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSI 292
             A  +FRE++ +           ++S+ +   D + G+Q+HAQ ++    SE+ + NS+
Sbjct: 293 KYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSL 352

Query: 293 IAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVD 352
           + MY+KCG  + +  +F  +T +S V WTA+IS YVQ G   E L  F KMRQ    + D
Sbjct: 353 VDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIA-D 411

Query: 353 SITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFE 412
             T  S+L AS  +A+L +  QLH    ++GF       + L+  Y+KCG++  A   F+
Sbjct: 412 QATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQ 471

Query: 413 EMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTN 472
           EM   R++VSWN +I  Y  NG  E  L  + +M  +G  PDS ++L +L+AC H+GL  
Sbjct: 472 EMP-DRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVE 530

Query: 473 DGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSG 532
           +GL  FN M +  K+ P +EHY  VVD+L R+G  ++A  L  ++       +W ++L+ 
Sbjct: 531 EGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNA 590

Query: 533 CVLH 536
           C +H
Sbjct: 591 CRIH 594



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 105/432 (24%), Positives = 195/432 (45%), Gaps = 42/432 (9%)

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVK---------------FGLESD-------LF 107
           +SFT   VL A  GL ++ L + IH  ++K               F  + D       LF
Sbjct: 209 DSFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLF 268

Query: 108 EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRA 167
           + +     VS N I++G+  +   + A  LF   + +          T++          
Sbjct: 269 DEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWE 328

Query: 168 LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
           +   IH  TI      ++ V NS++DMY+     + A  IF  +  +  + WT M+  +V
Sbjct: 329 MGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYV 388

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
              +  + L++F +MR++ +I D     +L+  +A +  L  GKQLH+ ++  G  S + 
Sbjct: 389 QKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVF 448

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
             ++++ +Y+KCG +  +   F ++ ++++VSW A+IS Y QNG A   L  F +M    
Sbjct: 449 SGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSG 508

Query: 348 TDSVDSITLVSILTASGELAALEICL-------QLHGIAFEAGFPR---YRSVQNCLISS 397
               DS++ + +L+A      +E  L       Q++ +      PR   Y SV + L  S
Sbjct: 509 LQP-DSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLD-----PRREHYASVVDMLCRS 562

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
               G  + A  +  EM    D + W++++    ++ + E A     ++    E+ D++ 
Sbjct: 563 ----GRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDAAP 618

Query: 458 YLSILNACGHAG 469
           Y+++ N    AG
Sbjct: 619 YVNMSNIYAAAG 630



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 137/317 (43%), Gaps = 30/317 (9%)

Query: 148 PNAVTMLTVIRGCVALGSRAL----CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDA 203
           PNA+  LT +    +L S  L       I    +K G   D S +N  +  +    +L  
Sbjct: 6   PNALQNLTSLTSLASLQSPKLRLNVVNNIDARIVKTGFDPDTSRSNFRVGNFLKNGELSQ 65

Query: 204 AIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAI 263
           A Q+F +M  K+ +S   M+  +V     G+A K+F  M +   +  T+    LI   + 
Sbjct: 66  ARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTI----LIGGYSQ 121

Query: 264 LGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAI 323
           L   K   +L  Q+   G + +     + + + S C    +   + NQIT+   V    I
Sbjct: 122 LNQFKEAFELFVQMQRCGTEPDYV---TFVTLLSGC----NGHEMGNQITQ---VQTQII 171

Query: 324 ISGY----------VQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICL 373
             GY          V + C    L+   ++ +E  + +DS T  ++L A+  L  + +  
Sbjct: 172 KLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPE-IDSFTFAAVLCANIGLDDIVLGQ 230

Query: 374 QLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVN 433
           Q+H    +  F     V N L+  YSK  +V  A  +F+EM   +D VS+N II GY  +
Sbjct: 231 QIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMP-EQDGVSYNVIISGYAWD 289

Query: 434 GHGETALALYHKMTETG 450
           G  + A  L+ ++  T 
Sbjct: 290 GKHKYAFDLFRELQFTA 306


>gi|357510605|ref|XP_003625591.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355500606|gb|AES81809.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 887

 Score =  275 bits (704), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 185/623 (29%), Positives = 301/623 (48%), Gaps = 68/623 (10%)

Query: 6   YNSSKLLSN-----YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           Y  S +L N     Y K G +K+A  +FD +   NVVSW+ +I GYS NG    ++  + 
Sbjct: 190 YQPSIILQNHMINMYGKCGSMKDARKVFDTMQLPNVVSWTSMISGYSQNGQANDAIIMYI 249

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK--FGLE--------------- 103
            M  SG  P+  T   V+ A     +++L R +H  ++K  FG                 
Sbjct: 250 QMTRSGQFPDQLTFGSVIKACYIAGDIDLGRQLHAHVIKSWFGHHLTSQNALISMYTNFG 309

Query: 104 -----SDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLF-NFFRGSGLVPNAVTMLTVI 157
                S++F  +    L+S   ++ G+I      +A+ LF +  R     PN     +V 
Sbjct: 310 QIEHASNVFTRIPTKDLISWGTMITGYIQLGYRVEALYLFRDLLRQGTYQPNEFIFGSVF 369

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
             C +L      + +HG+ +K GL  +V    S+ DMY+    L +A   F +++  D++
Sbjct: 370 SACSSLLELEYGKQVHGMCVKFGLRRNVFAGCSLCDMYAKFGFLPSAKMAFCQIKNPDIV 429

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           SW  ++  F D   A +A+  FR+M    +  D++  ++L+        L +G+Q+H+ +
Sbjct: 430 SWNAIIAAFADNGDANEAIDFFRQMIHIGLTPDSITYISLLCTCGSPVRLNQGRQIHSYI 489

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKS-LVSWTAIISGYVQNGCAREA 336
           V  G   E+ + NS++ MY+KC  L  + +VF  I+  + LVSW AI+S  +Q     E 
Sbjct: 490 VKIGFDKEITVCNSLLTMYTKCSHLHDALNVFRDISRNANLVSWNAILSACLQKKQEGET 549

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
              + +M     +  DSIT+ ++L    EL +L +  Q+H  + ++G     SV N LI 
Sbjct: 550 FRLYKEM-HFSGNKPDSITITTLLGTCAELTSLGVGNQVHCYSIKSGLILDVSVCNGLID 608

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
            Y+KCG++  A  VF+    L D+VSW+++I GY   G G  AL L+  MT  G  P+  
Sbjct: 609 MYAKCGSLKHARDVFDSTQNL-DIVSWSSLIVGYAQCGLGHEALNLFRIMTNLGVQPNEV 667

Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK 516
           TYL  L+AC H GL  +G  ++  M  E+ + P++EH+ C+VDLLARAGCL +A     K
Sbjct: 668 TYLGALSACSHIGLVEEGWRLYKSMETEHGIPPTREHFSCIVDLLARAGCLHEAETFIQK 727

Query: 517 LLEGMGPNI--WRALLSGCVLH---------------------------------VGRFQ 541
              G+  +I  W+ LL+ C  H                                  G ++
Sbjct: 728 --SGLDADITAWKTLLAACKTHNNVDIAERGAGNILKLDPSNSAAMVMLCNIHASAGNWE 785

Query: 542 DAEALRSGSQKKGIIKIPGISFL 564
           +   LR   ++ G+ K+PG S++
Sbjct: 786 EVAKLRKLMKQMGVQKVPGQSWI 808



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 120/453 (26%), Positives = 209/453 (46%), Gaps = 12/453 (2%)

Query: 98  VKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNF-FRGSGLVPNAVTMLTV 156
           VK  L+  +F  L     +  N+ +        +++A+  F+F  + S       T  ++
Sbjct: 108 VKPSLQPAIFSNLSKE--LPTNSYIIFLCKQHHYKEALEAFDFHLKNSNSHFEPSTYTSL 165

Query: 157 IRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
           +  C    S    + IH   +K      + + N +++MY     +  A ++F  M+  +V
Sbjct: 166 VLACANFRSLDYAKKIHDHVLKSNYQPSIILQNHMINMYGKCGSMKDARKVFDTMQLPNV 225

Query: 217 ISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQ 276
           +SWT M+  +     A DA+ ++ +M +S    D +   ++I    I GD+  G+QLHA 
Sbjct: 226 VSWTSMISGYSQNGQANDAIIMYIQMTRSGQFPDQLTFGSVIKACYIAGDIDLGRQLHAH 285

Query: 277 VVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
           V+       L   N++I+MY+  G ++ + +VF +I  K L+SW  +I+GY+Q G   EA
Sbjct: 286 VIKSWFGHHLTSQNALISMYTNFGQIEHASNVFTRIPTKDLISWGTMITGYIQLGYRVEA 345

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
           L  F  + ++ T   +     S+ +A   L  LE   Q+HG+  + G  R       L  
Sbjct: 346 LYLFRDLLRQGTYQPNEFIFGSVFSACSSLLELEYGKQVHGMCVKFGLRRNVFAGCSLCD 405

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
            Y+K G +  A + F ++    D+VSWN II  +  NG    A+  + +M   G  PDS 
Sbjct: 406 MYAKFGFLPSAKMAFCQIKN-PDIVSWNAIIAAFADNGDANEAIDFFRQMIHIGLTPDSI 464

Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGC--VVDLLARAGCLSDASGLA 514
           TY+S+L  CG     N G  I + ++   K+   +E   C  ++ +  +   L DA  + 
Sbjct: 465 TYISLLCTCGSPVRLNQGRQIHSYIV---KIGFDKEITVCNSLLTMYTKCSHLHDALNVF 521

Query: 515 GKLLEGMGPNIWRALLSGCVLHVGRFQDAEALR 547
             +        W A+LS C   + + Q+ E  R
Sbjct: 522 RDISRNANLVSWNAILSAC---LQKKQEGETFR 551


>gi|297816638|ref|XP_002876202.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322040|gb|EFH52461.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 769

 Score =  275 bits (703), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 186/619 (30%), Positives = 315/619 (50%), Gaps = 59/619 (9%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D   ++ +LS Y K G +++A  +FD +PE+N+VS++ VI GYS NG   +++  +  M+
Sbjct: 98  DTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQEAEAITLYLKML 157

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHG-------------------LMVKFGLES 104
            + L+P+ F    ++ A A   ++ L + +H                    + V+F   S
Sbjct: 158 QADLVPDQFAFGSIIKACACAGDVVLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMS 217

Query: 105 D---LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLV-PNAVTMLTVIRGC 160
           D   +F G+    L+S ++I+AGF       +A+         G+  PN     + ++ C
Sbjct: 218 DASKVFYGIPAKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKAC 277

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
            +L        IHGL IKL L  +     S+ DMY+    LD+A ++F ++E  D  SW 
Sbjct: 278 SSLLRPDYGSQIHGLCIKLELTGNAIAGCSLCDMYARCGFLDSARRVFNQIERPDTASWN 337

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++    +  YA +A+ +F EMR S  I D ++L +L+        L +G Q+H+ ++  
Sbjct: 338 VIIAGLANNGYADEAVSVFSEMRNSGFIPDAISLRSLLCAQTKPMALCQGMQIHSFIIKC 397

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKS-LVSWTAIISGYVQNGCAREALNQ 339
           G  ++L + NS++ MY+ C DL    ++F     K+  VSW AI++  +Q+    E L  
Sbjct: 398 GFLADLSVCNSLLTMYTFCSDLYCCFNLFEDFRNKADSVSWNAILTACLQHEQPVEMLRL 457

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           F  M   + +  D IT+ ++L    E+++L++  Q+H  +++ G    + ++N LI  Y+
Sbjct: 458 FKLMLVSECEP-DHITMGNLLRGCVEISSLKLGSQVHCYSWKTGLVLEQFIKNGLIDMYA 516

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           KCG++  A  +F+ M    DVVSW+T+I GY  +G GE AL L+ +M  +G  P+  T++
Sbjct: 517 KCGSLRQARRIFDSMDN-GDVVSWSTLIVGYAQSGFGEEALILFREMKSSGIEPNHVTFV 575

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519
            +L AC H GL  +GL ++  M  E+ + P++EH  CVVDLLARAG L++A     ++  
Sbjct: 576 GVLTACSHVGLVEEGLKLYAIMQTEHGISPTKEHCSCVVDLLARAGHLNEAERFIDEMKL 635

Query: 520 GMGPNIWRALLSGC------------------------VLHV---------GRFQDAEAL 546
                +W+ LLS C                          HV         G ++DA  L
Sbjct: 636 EPDVVVWKTLLSACKTQGNVDLAQKAAENILKIDPFNSTAHVLLCSMHASSGNWEDAALL 695

Query: 547 RSGSQKKGIIKIPGISFLN 565
           RS  +K  + KIPG S+++
Sbjct: 696 RSSMKKHDVKKIPGQSWID 714



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 167/347 (48%), Gaps = 2/347 (0%)

Query: 119 NAIVAGFINNKLFQQAVLLFNFF-RGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTI 177
           N  +     N  +++A+  F+F  + S       T +++I  C +  S A    IH   +
Sbjct: 32  NDHINSLCRNSFYREALEAFDFAQKNSSFKIRLRTYISLICACSSSRSLAQGRKIHDHIL 91

Query: 178 KLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALK 237
                 D  +NN +L MY     L  A ++F  M  ++++S+T ++  +       +A+ 
Sbjct: 92  NSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQEAEAIT 151

Query: 238 IFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYS 297
           ++ +M ++ ++ D  A  ++I   A  GD+  GKQLHAQV+     S L   N++IAMY 
Sbjct: 152 LYLKMLQADLVPDQFAFGSIIKACACAGDVVLGKQLHAQVIKLESSSHLIAQNALIAMYV 211

Query: 298 KCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLV 357
           +   +  +  VF  I  K L+SW++II+G+ Q G   EAL+   +M        +     
Sbjct: 212 RFNQMSDASKVFYGIPAKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFG 271

Query: 358 SILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFL 417
           S L A   L   +   Q+HG+  +            L   Y++CG +D A  VF ++   
Sbjct: 272 SSLKACSSLLRPDYGSQIHGLCIKLELTGNAIAGCSLCDMYARCGFLDSARRVFNQIE-R 330

Query: 418 RDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
            D  SWN II G   NG+ + A++++ +M  +G +PD+ +  S+L A
Sbjct: 331 PDTASWNVIIAGLANNGYADEAVSVFSEMRNSGFIPDAISLRSLLCA 377


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  275 bits (703), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 183/609 (30%), Positives = 311/609 (51%), Gaps = 56/609 (9%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSING-FHEKSMKAFSHMMLSG 66
           S++L++ Y   G +  +   FD+IP+K+V +W+ +I  Y  NG FHE     +  +++S 
Sbjct: 154 STRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSE 213

Query: 67  LLPNSFTMVGVLVAAAGL----------------QNLELARSIHGLMVKFG---LESDLF 107
           + P+ +T   VL A   L                 N+ +A S+  +  +FG   +   LF
Sbjct: 214 IRPDFYTFPPVLKACGTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLF 273

Query: 108 EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRA 167
           + +    + S NA+++G I N    QA+ + +  R  G+  N VT+++++  C  LG  +
Sbjct: 274 DDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDIS 333

Query: 168 LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
              LIH   IK GL  D+ V+N++++MY+   +L+ A + F++M   DV+SW  ++  + 
Sbjct: 334 TAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYE 393

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL-GGLQSEL 286
             +    A   F +M+ +    D + L++L S+ A   D K  + +H  ++  G L  ++
Sbjct: 394 QNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDV 453

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            + N+++ MY+K G LDS+  VF  I  K ++SW  +I+GY QNG A EA+  +  M + 
Sbjct: 454 VIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEEC 513

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
           K    +  T VSIL A   + AL+  +++HG   +        V  CLI  Y KCG +  
Sbjct: 514 KEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVD 573

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           A  +F ++      V+WN II  +G++GH E  L L+ +M + G  PD  T++S+L+AC 
Sbjct: 574 AMSLFYQVP-QESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACS 632

Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIW 526
           H+G   +G   F ++++E  +KPS +HYGC+VDLL RAG L  A      +      +IW
Sbjct: 633 HSGFVEEGKWCF-RLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIW 691

Query: 527 RALLSGCVLH---------------------------------VGRFQDAEALRSGSQKK 553
            ALL  C +H                                 VG+++  + +RS ++++
Sbjct: 692 GALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARER 751

Query: 554 GIIKIPGIS 562
           G+ K PG S
Sbjct: 752 GLKKTPGWS 760



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 134/459 (29%), Positives = 225/459 (49%), Gaps = 22/459 (4%)

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG---LESDLFEGLKNPYLVSCNAIVAGF 125
           P +  +  +LV A  +Q++ ++  +  L    G   L    F+ +    + + N++++ +
Sbjct: 133 PFAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAY 192

Query: 126 INNKLFQQAV-LLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILD 184
           ++N  F +A+   +     S + P+  T   V++ C   G+      IH    KLG   +
Sbjct: 193 VHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GTLVDGRKIHCWAFKLGFQWN 249

Query: 185 VSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRK 244
           V V  S++ MYS       A  +F +M  +D+ SW  M+   +    A  AL +  EMR 
Sbjct: 250 VFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRL 309

Query: 245 SRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDS 304
             I  + V +++++ V   LGD+     +H  V+  GL+ +L +SN++I MY+K G+L+ 
Sbjct: 310 EGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLED 369

Query: 305 SRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASG 364
           +R  F Q+    +VSW +II+ Y QN     A   F+KM Q      D +TLVS+ +   
Sbjct: 370 ARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKM-QLNGFQPDLLTLVSLASIVA 428

Query: 365 ELAALEICLQLHGIAFEAGFPRYRSV-QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSW 423
           +    +    +HG     G+     V  N ++  Y+K G +D A+ VFE +  ++DV+SW
Sbjct: 429 QSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIP-VKDVISW 487

Query: 424 NTIIYGYGVNGHGETALALYHKMTETGE-VPDSSTYLSILNACGHAGLTNDGLVIFNQMI 482
           NT+I GY  NG    A+ +Y  M E  E +P+  T++SIL A  H G    G+ I  ++I
Sbjct: 488 NTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVI 547

Query: 483 EENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           + N       H    V     A CL D  G  G+L++ M
Sbjct: 548 KTNL------HLDVFV-----ATCLIDVYGKCGRLVDAM 575



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/347 (22%), Positives = 158/347 (45%), Gaps = 25/347 (7%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
            D + S+ L++ Y K G +++A   F ++   +VVSW+ +I  Y  N     +   F  M
Sbjct: 349 FDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKM 408

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG--------------------- 101
            L+G  P+  T+V +    A  ++ + +RS+HG +++ G                     
Sbjct: 409 QLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGL 468

Query: 102 LES--DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRG-SGLVPNAVTMLTVIR 158
           L+S   +FE +    ++S N ++ G+  N L  +A+ ++        ++PN  T ++++ 
Sbjct: 469 LDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILP 528

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
               +G+      IHG  IK  L LDV V   ++D+Y     L  A+ +F ++  +  ++
Sbjct: 529 AYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVT 588

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           W  ++       +A   LK+F EM    +  D V  ++L+S  +  G ++ GK     + 
Sbjct: 589 WNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQ 648

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVS-WTAII 324
             G++  L+    ++ +  + G L+ +      +  +   S W A++
Sbjct: 649 EYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALL 695



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 72/343 (20%), Positives = 151/343 (44%), Gaps = 52/343 (15%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D + ++ L+  Y K G++ +A +LF ++P+++ V+W+ +I  + I+G  EK++K F  M
Sbjct: 553 LDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEM 612

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIV 122
           +  G+ P+  T V +L A +    +E  +    LM ++G++         P L     +V
Sbjct: 613 LDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQEYGIK---------PSLKHYGCMV 663

Query: 123 -----AGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC-----VALGSRALCELI 172
                AG++         + ++F +   L P+A     ++  C     + LG  A   L 
Sbjct: 664 DLLGRAGYLE--------MAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLF 715

Query: 173 HGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM-MGLFVDFEY 231
              +  +G  + +S   + +  +     +D    + RE   K    W+ + +   VD  Y
Sbjct: 716 EVDSKNVGYYVLLSNIYANVGKWE---GVDKVRSLARERGLKKTPGWSTIEVNRKVDVFY 772

Query: 232 AGD-----ALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
            G+       +I+ E+R   +     +L  +   + +L D++  ++ H   +L      L
Sbjct: 773 TGNQSHPKCKEIYEELRV--LTAKMKSLGYIPDYSFVLQDVEEDEKEH---ILTSHSERL 827

Query: 287 RLSNSIIAMYSK-----------CGDLDSSRSVFNQITEKSLV 318
            ++  II+   K           CGD  ++    ++IT++ +V
Sbjct: 828 AIAFGIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIV 870


>gi|125579001|gb|EAZ20147.1| hypothetical protein OsJ_35746 [Oryza sativa Japonica Group]
          Length = 601

 Score =  275 bits (703), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 166/528 (31%), Positives = 281/528 (53%), Gaps = 26/528 (4%)

Query: 31  IPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELA 90
           +PE++VVSW+ ++  + +NG    + +A   MM SG   N  ++V V+ A    Q  +  
Sbjct: 1   MPERDVVSWNSLVSAFLVNGMFHDARRALVSMMRSGFPLNVASLVSVVPACGTEQEEKFG 60

Query: 91  RSIHGLMVKFGLES----------------------DLFEGLKNPYLVSCNAIVAGFINN 128
            SIH L VK GL +                       +F+G+     VS N+ +  F+N 
Sbjct: 61  LSIHALAVKVGLNTMVNLANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFLNA 120

Query: 129 KLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVN 188
             +   + +F       ++P ++T+ +++   V LGS  L   +HG +IK  + LD+ V 
Sbjct: 121 GFYGDVLRMFRKMSEHNVMPGSITLSSLLPALVELGSFDLGREVHGYSIKRAMDLDIFVA 180

Query: 189 NSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRII 248
           NS++DMY+    L+ A  IF +M+ ++V+SW  M+   V      +A ++  +M+KS   
Sbjct: 181 NSLVDMYAKFGSLEKASTIFEQMKDRNVVSWNAMIANLVQNGAETEAFRLVTDMQKSGEC 240

Query: 249 CDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSV 308
            +++ L+N++   A +  LK GKQ+HA  +  GL  +L +SN++I MYSKCG L  +R++
Sbjct: 241 PNSITLVNVLPACARMASLKMGKQIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLARNI 300

Query: 309 FNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAA 368
           F + +EK  VS+  +I GY Q+    E+L  F +MR    D  D+++ +  L+A   L+ 
Sbjct: 301 FER-SEKDDVSYNTLILGYSQSPWCFESLLLFKQMRSVGID-YDAVSFMGALSACTNLSV 358

Query: 369 LEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIY 428
            +   ++H +        +  + N L+  Y+K G +  A  +F ++   +DV SWNT+I 
Sbjct: 359 FKHGKEIHCVLVRRLLSGHPFLSNSLLDLYTKGGMLVTASKIFNKIT-KKDVASWNTMIL 417

Query: 429 GYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVK 488
           GYG++G  + A  L+  M   G   D  +Y+++L AC H GL + G   F+QM+ +N ++
Sbjct: 418 GYGMHGQIDIAFELFELMKGDGLDYDHVSYIAVLAACSHGGLVDKGKKYFSQMVAQN-IE 476

Query: 489 PSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
           P Q HY C+VDLL RAG LS  + +   +      ++W ALL  C +H
Sbjct: 477 PQQMHYACMVDLLGRAGQLSKCAEIIRDMPFPANSDVWGALLGACRIH 524



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 128/515 (24%), Positives = 242/515 (46%), Gaps = 29/515 (5%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ L+  Y K G ++ +  +FD + E+N VSW+  I  +   GF+   ++ F  M    +
Sbjct: 79  ANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFLNAGFYGDVLRMFRKMSEHNV 138

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
           +P S T+  +L A   L + +L R +HG  +K  ++ D                      
Sbjct: 139 MPGSITLSSLLPALVELGSFDLGREVHGYSIKRAMDLDIFVANSLVDMYAKFGSLEKAST 198

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +FE +K+  +VS NA++A  + N    +A  L    + SG  PN++T++ V+  C  + S
Sbjct: 199 IFEQMKDRNVVSWNAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLPACARMAS 258

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
             + + IH  +I+ GL+ D+ ++N+++DMYS    L  A  IF   E KD +S+  ++  
Sbjct: 259 LKMGKQIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLARNIFERSE-KDDVSYNTLILG 317

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +    +  ++L +F++MR   I  D V+ +  +S    L   K GK++H  +V   L   
Sbjct: 318 YSQSPWCFESLLLFKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEIHCVLVRRLLSGH 377

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
             LSNS++ +Y+K G L ++  +FN+IT+K + SW  +I GY  +G    A   F  M+ 
Sbjct: 378 PFLSNSLLDLYTKGGMLVTASKIFNKITKKDVASWNTMILGYGMHGQIDIAFELFELMKG 437

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
           +  D  D ++ +++L A      ++   +             +    C++    + G + 
Sbjct: 438 DGLD-YDHVSYIAVLAACSHGGLVDKGKKYFSQMVAQNIEPQQMHYACMVDLLGRAGQLS 496

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL-NA 464
               +  +M F  +   W  ++    ++G+ E A      + E    P+ S Y +++ N 
Sbjct: 497 KCAEIIRDMPFPANSDVWGALLGACRIHGNIELAQWAAEHLFELK--PEHSGYYTLMINM 554

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVD 499
               G  N+   I  ++++  KV+ +   Y  V D
Sbjct: 555 YAETGRWNEANKI-RKLMKSRKVQKNPA-YSWVQD 587



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 157/321 (48%), Gaps = 21/321 (6%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D + ++ L+  Y K G +++A  +F+++ ++NVVSW+ +I     NG   ++ +  + M
Sbjct: 175 LDIFVANSLVDMYAKFGSLEKASTIFEQMKDRNVVSWNAMIANLVQNGAETEAFRLVTDM 234

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPYL----- 115
             SG  PNS T+V VL A A + +L++ + IH   ++ GL  DLF    L + Y      
Sbjct: 235 QKSGECPNSITLVNVLPACARMASLKMGKQIHAWSIRRGLMFDLFISNALIDMYSKCGQL 294

Query: 116 --------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                         VS N ++ G+  +    +++LLF   R  G+  +AV+ +  +  C 
Sbjct: 295 SLARNIFERSEKDDVSYNTLILGYSQSPWCFESLLLFKQMRSVGIDYDAVSFMGALSACT 354

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            L      + IH + ++  L     ++NS+LD+Y+    L  A +IF ++  KDV SW  
Sbjct: 355 NLSVFKHGKEIHCVLVRRLLSGHPFLSNSLLDLYTKGGMLVTASKIFNKITKKDVASWNT 414

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+  +        A ++F  M+   +  D V+ + +++  +  G + +GK+  +Q+V   
Sbjct: 415 MILGYGMHGQIDIAFELFELMKGDGLDYDHVSYIAVLAACSHGGLVDKGKKYFSQMVAQN 474

Query: 282 LQSELRLSNSIIAMYSKCGDL 302
           ++ +      ++ +  + G L
Sbjct: 475 IEPQQMHYACMVDLLGRAGQL 495


>gi|356561794|ref|XP_003549163.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Glycine max]
          Length = 615

 Score =  275 bits (702), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 185/600 (30%), Positives = 308/600 (51%), Gaps = 72/600 (12%)

Query: 33  EKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARS 92
            +++ +W+++I   + NGF  +++  +S M  SG+  N+ T   +L A A L +++    
Sbjct: 8   RRSLYTWNLMIRDSTNNGFFTQTLNIYSSMAHSGVHGNNLTYPLLLKACANLPSIQHGTM 67

Query: 93  IHGLMVKFGLESD----------------------LFEGLKNPYLVSCNAIVAGFINNKL 130
           +HG ++K G ++D                      +F+ +    +VS NA+V+ +     
Sbjct: 68  LHGHVLKLGFQADTFVQTALVDMYSKCSHVASARQVFDEMPQRSVVSWNAMVSAYSRRSS 127

Query: 131 FQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS---RALCELIHGLTIKLGLI-LDVS 186
             QA+ L       G  P A T ++++ G   L S     L + IH   IKLG++ L+VS
Sbjct: 128 MDQALSLLKEMWVLGFEPTASTFVSILSGYSNLDSFEFHLLGKSIHCCLIKLGIVYLEVS 187

Query: 187 VNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSR 246
           + NS++ MY     +D A ++F  M+ K +ISWT M+G +V   +A +A  +F +M+   
Sbjct: 188 LANSLMGMYVQFCLMDEARKVFDLMDEKSIISWTTMIGGYVKIGHAVEAYGLFYQMQHQS 247

Query: 247 IICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSR 306
           +  D V  LNLIS    + DL     +H+ V+  G   +  + N +I MY+KCG+L S+R
Sbjct: 248 VGIDFVVFLNLISGCIQVRDLLLASSVHSLVLKCGCNEKDPVENLLITMYAKCGNLTSAR 307

Query: 307 SVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD-SVDSITLVSILTASGE 365
            +F+ I EKS++SWT++I+GYV  G   EAL+ F +M   +TD   +  TL ++++A  +
Sbjct: 308 RIFDLIIEKSMLSWTSMIAGYVHLGHPGEALDLFRRMI--RTDIRPNGATLATVVSACAD 365

Query: 366 LAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNT 425
           L +L I  ++    F  G    + VQ  LI  YSKCG++  A  VFE +   +D+  W +
Sbjct: 366 LGSLSIGQEIEEYIFLNGLESDQQVQTSLIHMYSKCGSIVKAREVFERVTD-KDLTVWTS 424

Query: 426 IIYGYGVNGHGETALALYHKMTET-GEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEE 484
           +I  Y ++G G  A++L+HKMT   G +PD+  Y S+  AC H+GL  +GL  F  M ++
Sbjct: 425 MINSYAIHGMGNEAISLFHKMTTAEGIMPDAIVYTSVFLACSHSGLVEEGLKYFKSMQKD 484

Query: 485 NKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN----IWRALLSGCVLH---- 536
             + P+ EH  C++DLL R G L     LA   ++GM P+    +W  LLS C +H    
Sbjct: 485 FGITPTVEHCTCLIDLLGRVGQLD----LALNAIQGMPPDVQAQVWGPLLSACRIHGNVE 540

Query: 537 -----------------------------VGRFQDAEALRSGSQKKGIIKIPGISFLNST 567
                                        +G++++A  +R+    KG++K  G S +  T
Sbjct: 541 LGELATVRLLDSSPGSSGSYVLMANLYTSLGKWKEAHMMRNSMDGKGLVKESGWSQVEVT 600



 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 125/472 (26%), Positives = 217/472 (45%), Gaps = 49/472 (10%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L+  Y K   +  A  +FDE+P+++VVSW+ ++  YS     ++++     M 
Sbjct: 80  DTFVQTALVDMYSKCSHVASARQVFDEMPQRSVVSWNAMVSAYSRRSSMDQALSLLKEMW 139

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLE---LARSIHGLMVKFG---LESDLFEGLKNPY--- 114
           + G  P + T V +L   + L + E   L +SIH  ++K G   LE  L   L   Y   
Sbjct: 140 VLGFEPTASTFVSILSGYSNLDSFEFHLLGKSIHCCLIKLGIVYLEVSLANSLMGMYVQF 199

Query: 115 -----------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
                            ++S   ++ G++      +A  LF   +   +  + V  L +I
Sbjct: 200 CLMDEARKVFDLMDEKSIISWTTMIGGYVKIGHAVEAYGLFYQMQHQSVGIDFVVFLNLI 259

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
            GC+ +    L   +H L +K G      V N ++ MY+   +L +A +IF  +  K ++
Sbjct: 260 SGCIQVRDLLLASSVHSLVLKCGCNEKDPVENLLITMYAKCGNLTSARRIFDLIIEKSML 319

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           SWT M+  +V   + G+AL +FR M ++ I  +   L  ++S  A LG L  G+++   +
Sbjct: 320 SWTSMIAGYVHLGHPGEALDLFRRMIRTDIRPNGATLATVVSACADLGSLSIGQEIEEYI 379

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
            L GL+S+ ++  S+I MYSKCG +  +R VF ++T+K L  WT++I+ Y  +G   EA+
Sbjct: 380 FLNGLESDQQVQTSLIHMYSKCGSIVKAREVFERVTDKDLTVWTSMINSYAIHGMGNEAI 439

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ------ 391
           + F KM   +    D+I   S+  A             H    E G   ++S+Q      
Sbjct: 440 SLFHKMTTAEGIMPDAIVYTSVFLACS-----------HSGLVEEGLKYFKSMQKDFGIT 488

Query: 392 ------NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGE 437
                  CLI    + G +DLA    + M        W  ++    ++G+ E
Sbjct: 489 PTVEHCTCLIDLLGRVGQLDLALNAIQGMPPDVQAQVWGPLLSACRIHGNVE 540


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  275 bits (702), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 183/612 (29%), Positives = 307/612 (50%), Gaps = 65/612 (10%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS-G 66
           S+KL++ Y   G +  A + FD I  ++V +W+++I GY   G   + ++ FS  MLS G
Sbjct: 89  SAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSG 148

Query: 67  LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--------------------- 105
           L P+  T   VL A   + +      IH L +KFG   D                     
Sbjct: 149 LTPDYRTFPSVLKACRTVID---GNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNAR 205

Query: 106 -LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
            LF+ +    + S NA+++G+  +   ++A+ L N  R      ++VT+++++  C   G
Sbjct: 206 ILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAM----DSVTVVSLLSACTEAG 261

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
                  IH  +IK GL  ++ V+N ++D+Y+    L    ++F  M  +D+ISW  ++ 
Sbjct: 262 DFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIK 321

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG-LQ 283
            +   E    A+ +F+EMR SRI  D + L++L S+ + LGD++  + +    +  G   
Sbjct: 322 AYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFL 381

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
            ++ + N+++ MY+K G +DS+R+VFN +    ++SW  IISGY QNG A EA+  +  M
Sbjct: 382 EDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIM 441

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
            +E   + +  T VS+L A  +  AL   ++LHG   + G      V   L   Y KCG 
Sbjct: 442 EEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGR 501

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           ++ A  +F ++  + + V WNT+I  +G +GHGE A+ L+ +M + G  PD  T++++L+
Sbjct: 502 LEDALSLFYQIPRV-NSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLS 560

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
           AC H+GL ++G   F  M  +  + PS +HYGC+VD+  RAG L  A      +      
Sbjct: 561 ACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDA 620

Query: 524 NIWRALLSGCVLH---------------------------------VGRFQDAEALRSGS 550
           +IW ALLS C +H                                  G+++  + +RS +
Sbjct: 621 SIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIA 680

Query: 551 QKKGIIKIPGIS 562
             KG+ K PG S
Sbjct: 681 HGKGLRKTPGWS 692



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 160/311 (51%), Gaps = 19/311 (6%)

Query: 155 TVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
           T+ R C  L S A C  +H   +    I +V ++  ++++Y  L ++  A   F  ++ +
Sbjct: 59  TLFRYCTNLQS-AKC--LHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNR 115

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFR----EMRKSRIICDTVALLNLISVNAILGDLKRG 270
           DV +W  M+     +  AG++ ++ R     M  S +  D     +++     + D   G
Sbjct: 116 DVYAWNLMIS---GYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVID---G 169

Query: 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
            ++H   +  G   ++ ++ S+I +YS+   + ++R +F+++  + + SW A+ISGY Q+
Sbjct: 170 NKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQS 229

Query: 331 GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV 390
           G A+EAL     +R     ++DS+T+VS+L+A  E       + +H  + + G      V
Sbjct: 230 GNAKEALTLSNGLR-----AMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFV 284

Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
            N LI  Y++ G +     VF+ M ++RD++SWN+II  Y +N     A++L+ +M  + 
Sbjct: 285 SNKLIDLYAEFGRLRDCQKVFDRM-YVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSR 343

Query: 451 EVPDSSTYLSI 461
             PD  T +S+
Sbjct: 344 IQPDCLTLISL 354



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 127/255 (49%), Gaps = 15/255 (5%)

Query: 266 DLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIIS 325
           +L+  K LHA++V+      + +S  ++ +Y   G++  +R  F+ I  + + +W  +IS
Sbjct: 66  NLQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMIS 125

Query: 326 GYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFP 385
           GY + G + E +  F         + D  T  S+L A   +       ++H +A + GF 
Sbjct: 126 GYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVIDGN---KIHCLALKFGFM 182

Query: 386 RYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHK 445
               V   LI  YS+   V  A I+F+EM  +RD+ SWN +I GY  +G+ + AL L + 
Sbjct: 183 WDVYVAASLIHLYSRYKAVGNARILFDEMP-VRDMGSWNAMISGYCQSGNAKEALTLSNG 241

Query: 446 MTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIE---ENKVKPSQEHYGCVVDLLA 502
           +       DS T +S+L+AC  AG  N G+ I +  I+   E+++  S +    ++DL A
Sbjct: 242 L----RAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNK----LIDLYA 293

Query: 503 RAGCLSDASGLAGKL 517
             G L D   +  ++
Sbjct: 294 EFGRLRDCQKVFDRM 308



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 45/80 (56%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  + L   Y K G++++A +LF +IP  N V W+ +I  +  +G  EK++  F  M
Sbjct: 484 LDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEM 543

Query: 63  MLSGLLPNSFTMVGVLVAAA 82
           +  G+ P+  T V +L A +
Sbjct: 544 LDEGVKPDHITFVTLLSACS 563


>gi|225438700|ref|XP_002277701.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
            mitochondrial [Vitis vinifera]
          Length = 1008

 Score =  274 bits (701), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 175/612 (28%), Positives = 309/612 (50%), Gaps = 61/612 (9%)

Query: 8    SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
            ++ LLS Y K G +  A+ +F ++P +N++SW+ +I GY  NG  E SM AF  M   G 
Sbjct: 395  ATALLSMYAKLGDLNSADFIFYQMPRRNLLSWNSMISGYGHNGLWEASMDAFCDMQFEGF 454

Query: 68   LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL--------------------- 106
             P++ ++V +L A + L+ + L ++ H    +   +S+L                     
Sbjct: 455  DPDAISIVNILSACSKLEAILLGKAAHAFSFRKEFDSNLNISNALLAFYSDCGKLSSSFK 514

Query: 107  -FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
             F+ +     +S N +++G ++N   ++AV L +  +   +  + VT++++I  C    +
Sbjct: 515  LFQKMPLRNAISWNTLISGCVHNGDTKKAVALLHKMQQEKMELDLVTLISIIPICRVAEN 574

Query: 166  RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
                  +HG  IK G   DVS+ N+++ MY    D++A   +F  M  + ++SW  ++  
Sbjct: 575  LIQGMTLHGYAIKTGFACDVSLVNALISMYFNCGDINAGKFLFEVMPWRSIVSWNALITG 634

Query: 226  FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
            +       + +  F +M +     + V LLNL+        L +GK +HA  V  G+  E
Sbjct: 635  YRFHYLQNEVMASFCQMIREGQKPNYVTLLNLLPS---CRTLLQGKSIHAFAVRTGVIVE 691

Query: 286  LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
              +  S+I+MY++  +++S   +F    ++ +  W AI+S YVQ   A+E++  F ++  
Sbjct: 692  TPIITSLISMYARFENINSFIFLFEMGGKEDIALWNAIMSVYVQTKNAKESVTFFCELLH 751

Query: 346  EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
             + +  D IT +S+++A  +L++L +   +     + GF ++  + N LI  +++CGN+ 
Sbjct: 752  ARVEP-DYITFLSLISACVQLSSLNLSNSVMAYVIQKGFDKHIVISNALIDLFARCGNIS 810

Query: 406  LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            +A  +FE +   +D VSW+T+I GYG++G  E ALAL  +M  +G  PD  TY S+L+AC
Sbjct: 811  IAKKIFEGLS-SKDAVSWSTMINGYGLHGDSEAALALLSQMRLSGMKPDGITYASVLSAC 869

Query: 466  GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI 525
             H G  + G +IFN M+EE  V    EHY C+VDLL R G L++A     KL      ++
Sbjct: 870  SHGGFIDQGWMIFNSMVEEG-VPRRMEHYACMVDLLGRTGQLNEAYDFVEKLPCKPSVSL 928

Query: 526  WRALLSGCVLH---------------------------------VGRFQDAEALRSGSQK 552
              +LL  C++H                                  GR+ DA  +RS  ++
Sbjct: 929  LESLLGACIIHGNVKLGEKISSLLFELDPKNSGSYVMLYNIYAAAGRWMDANRVRSDMEE 988

Query: 553  KGIIKIPGISFL 564
            + + KIPG S +
Sbjct: 989  RQLRKIPGFSLV 1000



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 145/588 (24%), Positives = 287/588 (48%), Gaps = 43/588 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + +  L+S Y   G +  A +LFD   EKNVV W+ +I  Y+ N    ++ K F  M+
Sbjct: 290 DEFLTPALISMYAGGGNLFIARDLFDSAAEKNVVIWNSMISAYAQNQKSSEAFKMFQQML 349

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------- 106
            + + PN  T V ++       N    +S+H  ++K+ L+S L                 
Sbjct: 350 KANMQPNVVTFVSIIPCCENSANFWYGKSLHAHVMKYRLDSQLSVATALLSMYAKLGDLN 409

Query: 107 -----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                F  +    L+S N++++G+ +N L++ ++  F   +  G  P+A++++ ++  C 
Sbjct: 410 SADFIFYQMPRRNLLSWNSMISGYGHNGLWEASMDAFCDMQFEGFDPDAISIVNILSACS 469

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            L +  L +  H  + +     +++++N++L  YS    L ++ ++F++M  ++ ISW  
Sbjct: 470 KLEAILLGKAAHAFSFRKEFDSNLNISNALLAFYSDCGKLSSSFKLFQKMPLRNAISWNT 529

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++   V       A+ +  +M++ ++  D V L+++I +  +  +L +G  LH   +  G
Sbjct: 530 LISGCVHNGDTKKAVALLHKMQQEKMELDLVTLISIIPICRVAENLIQGMTLHGYAIKTG 589

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
              ++ L N++I+MY  CGD+++ + +F  +  +S+VSW A+I+GY  +    E +  F 
Sbjct: 590 FACDVSLVNALISMYFNCGDINAGKFLFEVMPWRSIVSWNALITGYRFHYLQNEVMASFC 649

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +M +E     + +TL+++L +   L   +    +H  A   G      +   LIS Y++ 
Sbjct: 650 QMIREGQKP-NYVTLLNLLPSCRTLLQGK---SIHAFAVRTGVIVETPIITSLISMYARF 705

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
            N++ ++I   EMG   D+  WN I+  Y    + + ++  + ++      PD  T+LS+
Sbjct: 706 ENIN-SFIFLFEMGGKEDIALWNAIMSVYVQTKNAKESVTFFCELLHARVEPDYITFLSL 764

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY---GCVVDLLARAGCLSDASGLAGKLL 518
           ++AC      N    +   +I+    K   +H      ++DL AR G +S    +A K+ 
Sbjct: 765 ISACVQLSSLNLSNSVMAYVIQ----KGFDKHIVISNALIDLFARCGNIS----IAKKIF 816

Query: 519 EGMGPN---IWRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISF 563
           EG+       W  +++G  LH G  + A AL S  +  G +K  GI++
Sbjct: 817 EGLSSKDAVSWSTMINGYGLH-GDSEAALALLSQMRLSG-MKPDGITY 862



 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 147/563 (26%), Positives = 272/563 (48%), Gaps = 37/563 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  ++ + + F  G  + A + F+ I + +V   +++I     +G  E  +  +    
Sbjct: 88  DEYVVAEFIISCFHLGAPELALSAFEAIEKPSVFLQNLMIRRLCDHGLFEDVLCVYLKCR 147

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------- 106
           + G   + FT   V+ A   L  + +A  +H ++++   E +L                 
Sbjct: 148 VLGCPSDDFTFPFVIKACTALGAVWIAEGVHCIVLRTSFEENLVIQTALVDFYAKTGRMV 207

Query: 107 -----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                 + +  P LV+ NA+++G+  N   ++   +       GL PN  T  ++I  C 
Sbjct: 208 KARLVLDKISQPDLVTWNALISGYSLNGFDKEVFEVLRQINEMGLKPNVSTFASIIPLCT 267

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            +    + + IHG  +K G   D  +  +++ MY+   +L  A  +F     K+V+ W  
Sbjct: 268 RMKCLDIGKSIHGFVVKSGFSSDEFLTPALISMYAGGGNLFIARDLFDSAAEKNVVIWNS 327

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+  +   + + +A K+F++M K+ +  + V  +++I       +   GK LHA V+   
Sbjct: 328 MISAYAQNQKSSEAFKMFQQMLKANMQPNVVTFVSIIPCCENSANFWYGKSLHAHVMKYR 387

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           L S+L ++ ++++MY+K GDL+S+  +F Q+  ++L+SW ++ISGY  NG    +++ F 
Sbjct: 388 LDSQLSVATALLSMYAKLGDLNSADFIFYQMPRRNLLSWNSMISGYGHNGLWEASMDAFC 447

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
            M+ E  D  D+I++V+IL+A  +L A+ +    H  +F   F    ++ N L++ YS C
Sbjct: 448 DMQFEGFDP-DAISIVNILSACSKLEAILLGKAAHAFSFRKEFDSNLNISNALLAFYSDC 506

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G +  ++ +F++M  LR+ +SWNT+I G   NG  + A+AL HKM +     D  T +SI
Sbjct: 507 GKLSSSFKLFQKMP-LRNAISWNTLISGCVHNGDTKKAVALLHKMQQEKMELDLVTLISI 565

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL--AGKLLE 519
           +  C  A     G+ +    I+          + C V L+     +    G   AGK L 
Sbjct: 566 IPICRVAENLIQGMTLHGYAIKTG--------FACDVSLVNALISMYFNCGDINAGKFLF 617

Query: 520 GMGPNIWRALLSGCVLHVG-RFQ 541
            + P  WR+++S   L  G RF 
Sbjct: 618 EVMP--WRSIVSWNALITGYRFH 638


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  274 bits (701), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 185/560 (33%), Positives = 288/560 (51%), Gaps = 35/560 (6%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  + L++ Y K G +  A  +F  +P +N+VSW+ +I G+S NGF +        M
Sbjct: 64  LDVFVGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEM 123

Query: 63  ML--SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--------------- 105
           M    GLLP+  T+V VL   A   ++++   IHGL VK GL  D               
Sbjct: 124 MAGEEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCG 183

Query: 106 -------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFR----GSGLVPNAVTML 154
                  LF+       VS N ++ G        +A   FN FR       +  N VT+L
Sbjct: 184 YLTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEA---FNLFREMQMQEDIEVNEVTVL 240

Query: 155 TVIRGCVALGS-RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC 213
            ++  C+ +   R+L EL HG +I+ G   D  V N  +  Y+    L  A ++F  ME 
Sbjct: 241 NILPACLEISQLRSLKEL-HGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMET 299

Query: 214 KDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQL 273
           K V SW  ++G          AL ++ +M  S ++ D   + +L+  +A L  L+ GK++
Sbjct: 300 KTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEV 359

Query: 274 HAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA 333
           H  V+  GL+ +  +  S++++Y  CG+  S+R +F+ + EKS VSW A+ISGY QNG  
Sbjct: 360 HGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLP 419

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC 393
            +AL  F K+  +     D I +VS+L A  + +AL +  + H  A +A       V   
Sbjct: 420 EDALILFRKLVSDGFQPSD-IAVVSVLGACSQQSALRLGKETHCYALKALLMEDVFVACS 478

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
            I  Y+K G +  +  VF+ +   +D+ SWN II  YGV+G GE ++ L+ +M + G++P
Sbjct: 479 TIDMYAKSGCIKESRSVFDGLKN-KDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMP 537

Query: 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL 513
           D  T++ IL  C HAGL  +GL  FN+M   + ++P  EHY CV+D+L RAG L DA  L
Sbjct: 538 DGFTFIGILTVCSHAGLVEEGLKYFNEMQNFHGIEPKLEHYACVMDMLGRAGRLDDALRL 597

Query: 514 AGKLLEGMGPNIWRALLSGC 533
             ++ E     +W +LLS C
Sbjct: 598 VHEMPEQPDSRVWSSLLSFC 617



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 155/506 (30%), Positives = 239/506 (47%), Gaps = 57/506 (11%)

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG-------------------- 109
           ++FT   V+ A  G  +  L   IHG+++K GL  D+F G                    
Sbjct: 30  DNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDVFVGNALIAMYGKFGFVDAAVKVF 89

Query: 110 --LKNPYLVSCNAIVAGFINNKLFQQAV-LLFNFFRG-SGLVPNAVTMLTVIRGC----- 160
             +    LVS N+I++GF  N   +    +L     G  GL+P+  T++TV+  C     
Sbjct: 90  HYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVD 149

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
           V +G R     IHGL +KLGL  DV VNNS++DMYS    L  A  +F +   K+ +SW 
Sbjct: 150 VQMGIR-----IHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWN 204

Query: 221 RMMGLFVDFEYAGDALKIFREMR-KSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
            M+G      Y  +A  +FREM+ +  I  + V +LN++     +  L+  K+LH   + 
Sbjct: 205 TMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHGYSIR 264

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G Q +  ++N  +A Y+KCG L  +  VF  +  K++ SW A+I G  QNG  R+ALN 
Sbjct: 265 HGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKALNL 324

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           +I+M        D  T+ S+L AS  L +L    ++HG     G      +   L+S Y 
Sbjct: 325 YIQMTYSGL-VPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEIDSFIGISLLSLYI 383

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
            CG    A ++F+ M   +  VSWN +I GY  NG  E AL L+ K+   G  P     +
Sbjct: 384 HCGESSSARLLFDGME-EKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAVV 442

Query: 460 SILNACGHA-----GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA---- 510
           S+L AC        G       +   ++E+  V  S       +D+ A++GC+ ++    
Sbjct: 443 SVLGACSQQSALRLGKETHCYALKALLMEDVFVACS------TIDMYAKSGCIKESRSVF 496

Query: 511 SGLAGKLLEGMGPNIWRALLSGCVLH 536
            GL  K L       W A+++   +H
Sbjct: 497 DGLKNKDLAS-----WNAIIAAYGVH 517



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 114/343 (33%), Positives = 187/343 (54%), Gaps = 4/343 (1%)

Query: 128 NKLFQQAVLLF-NFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVS 186
           N+L+  A+ +F      +    +  T   VI+ C     R L E+IHG+ IK+GL+LDV 
Sbjct: 8   NELYSDAIDMFVKLITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDVF 67

Query: 187 VNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSR 246
           V N+++ MY     +DAA+++F  M  ++++SW  ++  F +  ++ D   +  EM    
Sbjct: 68  VGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGE 127

Query: 247 --IICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDS 304
             ++ D   L+ ++ V A   D++ G ++H   V  GL  ++R++NS++ MYSKCG L  
Sbjct: 128 EGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTE 187

Query: 305 SRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASG 364
           ++ +F++   K+ VSW  +I G    G   EA N F +M+ ++   V+ +T+++IL A  
Sbjct: 188 AQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACL 247

Query: 365 ELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWN 424
           E++ L    +LHG +   GF     V N  +++Y+KCG +  A  VF  M   + V SWN
Sbjct: 248 EISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSME-TKTVNSWN 306

Query: 425 TIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
            +I G   NG    AL LY +MT +G VPD  T  S+L A  H
Sbjct: 307 ALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAH 349


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  274 bits (700), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 182/608 (29%), Positives = 307/608 (50%), Gaps = 63/608 (10%)

Query: 15  YFKSGKIKEAENLFDEIPEK-NVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFT 73
           Y K   +  A  LFD +PEK +VVSW+ +I  YS NG   ++++ F  M  + L PN++T
Sbjct: 225 YTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYT 284

Query: 74  MVGVLVAAAGLQNLELARSIHGLMVK----------------------FGLESDLFEGLK 111
            V  L A      ++    IH  ++K                       G  +++F  + 
Sbjct: 285 FVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMD 344

Query: 112 NPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCEL 171
           +   +S N++++GF+ N L+ +A+  ++  R +G  P+ V ++++I      G+      
Sbjct: 345 DWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQ 404

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           IH   +K GL  D+ V NS++DMY+    +     IF +M  KDV+SWT ++        
Sbjct: 405 IHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGS 464

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
              AL++FRE++   I  D + + +++   + L  +   K++H+ ++  GL S+L L N 
Sbjct: 465 HSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGL-SDLVLQNG 523

Query: 292 IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
           I+ +Y +CG++D +  +F  I  K +VSWT++IS YV NG A EAL  F  M++   +  
Sbjct: 524 IVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEP- 582

Query: 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVF 411
           DSI+LVSIL+A+  L+AL+   ++HG     GF    S+ + L+  Y++CG ++ +  VF
Sbjct: 583 DSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVF 642

Query: 412 EEMGFLR--DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAG 469
               F+R  D+V W ++I  YG++G G  A+ L+ +M +    PD   ++++L AC H+G
Sbjct: 643 ---NFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSG 699

Query: 470 LTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRAL 529
           L N+G      M  E +++P  EHY C+VDLL RA  L +A      +       +W AL
Sbjct: 700 LMNEGRRFLESMKYEYQLEPWPEHYACLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCAL 759

Query: 530 LSGCVLHVG---------------------------------RFQDAEALRSGSQKKGII 556
           L  C +H                                   R++D E +R   +  G+ 
Sbjct: 760 LGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYSAERRWKDVEXVRMRMKASGLK 819

Query: 557 KIPGISFL 564
           K PG S++
Sbjct: 820 KNPGCSWI 827



 Score =  225 bits (573), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 159/526 (30%), Positives = 263/526 (50%), Gaps = 27/526 (5%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S++L+  Y K G + +AE LFD +P K + +W+ +I  Y  NG    S++ +  M +SG+
Sbjct: 117 STRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGI 176

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF---------------EGLKN 112
             ++ T   +L A   L++      +HGL +K G  S +F                G + 
Sbjct: 177 PLDACTFPCILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQ 236

Query: 113 PY--------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
            +        +VS N++++ + +N    +A+ LF   + + L PN  T +  ++ C    
Sbjct: 237 LFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSS 296

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
                  IH   +K    ++V V N+++ MY+    +  A  IF  M+  D ISW  M+ 
Sbjct: 297 FIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLS 356

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            FV      +AL+ + EMR +    D VA++++I+ +A  G+   G Q+HA  +  GL S
Sbjct: 357 GFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNGLDS 416

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           +L++ NS++ MY+K   +     +F+++ +K +VSWT II+G+ QNG    AL  F +++
Sbjct: 417 DLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQ 476

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
            E  D +D + + SIL A   L  +    ++H      G      +QN ++  Y +CGNV
Sbjct: 477 LEGID-LDVMMISSILLACSGLKLISSVKEIHSYIIRKGLSDL-VLQNGIVDVYGECGNV 534

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           D A  +FE + F +DVVSW ++I  Y  NG    AL L+H M ETG  PDS + +SIL+A
Sbjct: 535 DYAARMFELIEF-KDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSA 593

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
                    G  I   +I +  V         +VD+ AR G L  +
Sbjct: 594 AASLSALKKGKEIHGFLIRKGFVLEGSLA-STLVDMYARCGTLEKS 638



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 116/429 (27%), Positives = 227/429 (52%), Gaps = 25/429 (5%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           I+ + ++ L++ Y + GK+ EA N+F  + + + +SW+ ++ G+  NG + ++++ +  M
Sbjct: 315 INVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEM 374

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------- 106
             +G  P+   ++ ++ A+A   N      IH   +K GL+SDL                
Sbjct: 375 RDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSM 434

Query: 107 ------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                 F+ + +  +VS   I+AG   N    +A+ LF   +  G+  + + + +++  C
Sbjct: 435 KYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLAC 494

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             L   +  + IH   I+ GL  D+ + N ++D+Y    ++D A ++F  +E KDV+SWT
Sbjct: 495 SGLKLISSVKEIHSYIIRKGLS-DLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWT 553

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+  +V    A +AL++F  M+++ +  D+++L++++S  A L  LK+GK++H  ++  
Sbjct: 554 SMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRK 613

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           G   E  L+++++ MY++CG L+ SR+VFN I  K LV WT++I+ Y  +GC R A++ F
Sbjct: 614 GFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLF 673

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQ-LHGIAFEAGFPRYRSVQNCLISSYS 399
            +M  E   + D I  V++L A      +    + L  + +E     +     CL+    
Sbjct: 674 RRMEDESI-APDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYACLVDLLG 732

Query: 400 KCGNVDLAY 408
           +  +++ AY
Sbjct: 733 RANHLEEAY 741



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 155/313 (49%), Gaps = 21/313 (6%)

Query: 267 LKRGKQLHAQVVLG-GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIIS 325
           L  G+Q+HA ++    L + + LS  ++ MY KCG L  +  +F+ +  K++ +W A+I 
Sbjct: 94  LSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIG 153

Query: 326 GYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFP 385
            YV NG    +L  + +MR      +D+ T   IL A G L       ++HG+A + G+ 
Sbjct: 154 AYVTNGEPLGSLELYREMRVSGI-PLDACTFPCILKACGLLKDRRYGAEVHGLAIKEGYV 212

Query: 386 RYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHK 445
               V N ++  Y+KC +++ A  +F+ M    DVVSWN++I  Y  NG    AL L+ +
Sbjct: 213 SIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGE 272

Query: 446 MTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY------GCVVD 499
           M +    P++ T+++ L AC  +     G+ I   +++ +       +Y        ++ 
Sbjct: 273 MQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSS-------YYINVFVANALIA 325

Query: 500 LLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCV---LHVGRFQDAEALRSGSQKKGII 556
           + AR G + +A+ +    ++      W ++LSG V   L+    Q    +R   QK  ++
Sbjct: 326 MYARFGKMGEAANIFYN-MDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLV 384

Query: 557 KIPGISFLNSTSR 569
            +  IS + +++R
Sbjct: 385 AV--ISIIAASAR 395


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  274 bits (700), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 163/558 (29%), Positives = 285/558 (51%), Gaps = 24/558 (4%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  +  +++ ++  Y KSG +  A +LFD + +++VV+W+++I GY+ +    ++   F+
Sbjct: 69  PHKNVISTNTMIMGYLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFA 128

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES---------------- 104
            M   G++P+  T+  +L      +++     +HG +VK G +S                
Sbjct: 129 DMCRHGMVPDHITLATLLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTR 188

Query: 105 ------DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                  LF+ +     V+ NA++ G+        A+ LF   +  G  P+  T   V+ 
Sbjct: 189 SLGLACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLT 248

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
             + +      + +H   +K   + +V V N++LD YS    +  A ++F EM   D IS
Sbjct: 249 AGIQMDDIEFGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGIS 308

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           +  ++          ++L++FRE++ +R          L+S+ A   +L+ G+Q+H+Q +
Sbjct: 309 YNVLITCCAWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAI 368

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
           +    SE+ + NS++ MY+KC     +  +F  +  +S V WTA+ISGYVQ G   + L 
Sbjct: 369 VTDAISEVLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLK 428

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
            F++M + K    DS T  SIL A   LA+L +  QLH     +G        + L+  Y
Sbjct: 429 LFVEMHRAKI-GADSATYASILRACANLASLTLGKQLHSRIIRSGCLSNVFSGSALVDMY 487

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
           +KCG++  A  +F+EM  +R+ VSWN +I  Y  NG G  AL  + +M  +G  P+S ++
Sbjct: 488 AKCGSIKEALQMFQEMP-VRNSVSWNALISAYAQNGDGGHALRSFEQMIHSGLQPNSVSF 546

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
           LSIL AC H GL  +GL  FN M +  K++P +EHY  +VD+L R+G   +A  L  ++ 
Sbjct: 547 LSILCACSHCGLVEEGLQYFNSMTQVYKLEPRREHYASMVDMLCRSGRFDEAEKLMARMP 606

Query: 519 EGMGPNIWRALLSGCVLH 536
                 +W ++L+ C +H
Sbjct: 607 FEPDEIMWSSILNSCRIH 624



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 126/489 (25%), Positives = 223/489 (45%), Gaps = 38/489 (7%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           LL +Y K+  +  A +LF  + EK+ V+++ ++ GYS  GF+  ++  F  M   G  P+
Sbjct: 180 LLDSYCKTRSLGLACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPS 239

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF----------------EGLKNPY 114
            FT   VL A   + ++E  + +H  +VK     ++F                E  K  Y
Sbjct: 240 EFTFAAVLTAGIQMDDIEFGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFY 299

Query: 115 L------VSCNAIVAGFINNKLFQQAVLLF---NFFRGSGLVPNAVTMLTVIRGCVALGS 165
                  +S N ++     N   ++++ LF    F R         T+L++    + L  
Sbjct: 300 EMPEVDGISYNVLITCCAWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAANSLNL-- 357

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
             +   IH   I    I +V V NS++DMY+       A +IF ++  +  + WT ++  
Sbjct: 358 -EMGRQIHSQAIVTDAISEVLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISG 416

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +V      D LK+F EM +++I  D+    +++   A L  L  GKQLH++++  G  S 
Sbjct: 417 YVQKGLHEDGLKLFVEMHRAKIGADSATYASILRACANLASLTLGKQLHSRIIRSGCLSN 476

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           +   ++++ MY+KCG +  +  +F ++  ++ VSW A+IS Y QNG    AL  F +M  
Sbjct: 477 VFSGSALVDMYAKCGSIKEALQMFQEMPVRNSVSWNALISAYAQNGDGGHALRSFEQMIH 536

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHG-----IAFEAGFPRYRSVQNCLISSYSK 400
                 +S++ +SIL A      +E  LQ           E     Y S+ + L  S   
Sbjct: 537 SGLQP-NSVSFLSILCACSHCGLVEEGLQYFNSMTQVYKLEPRREHYASMVDMLCRS--- 592

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
            G  D A  +   M F  D + W++I+    ++ + E A+    ++     + D++ Y+S
Sbjct: 593 -GRFDEAEKLMARMPFEPDEIMWSSILNSCRIHKNQELAIKAADQLFNMKGLRDAAPYVS 651

Query: 461 ILNACGHAG 469
           + N    AG
Sbjct: 652 MSNIYAAAG 660


>gi|225428104|ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic [Vitis vinifera]
 gi|297744563|emb|CBI37825.3| unnamed protein product [Vitis vinifera]
          Length = 802

 Score =  274 bits (700), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 172/619 (27%), Positives = 312/619 (50%), Gaps = 58/619 (9%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           ++ LS+Y + G +K A +LF+ + + +   W+++I G+  NG    ++  +  M   G+ 
Sbjct: 64  TRALSSYVERGYMKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAVDFYHRMEFGGVR 123

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG------------------- 109
            ++FT   V+ A  GL +L     +HG ++K GL+ D++ G                   
Sbjct: 124 GDNFTYPFVIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGCIESAEMV 183

Query: 110 ---LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
              +    LVS N++++G+++     +++  F   + SG+  +  +++ ++  C   G  
Sbjct: 184 FREMPVRDLVSWNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSVIGILGACSLEGFL 243

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
              + IH   ++  L LDV V  S++DMY+    +D A ++F ++  K +++W  M+G +
Sbjct: 244 RNGKEIHCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQITDKSIVAWNAMIGGY 303

Query: 227 VDFEYAGDALKIFREMRKS-RIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
                + ++    R+M++  ++  D + ++NL+   A L  +  GK +H   +  G    
Sbjct: 304 SLNAQSFESFAYVRKMQEGGKLHPDWITMINLLPPCAQLEAILLGKSVHGFAIRNGFLPH 363

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           L L  +++ MY +CG L  +  +F Q+ E++L+SW A+I+ Y +NG  R+A+  F  +  
Sbjct: 364 LVLETALVDMYGECGKLKPAECLFGQMNERNLISWNAMIASYTKNGENRKAMTLFQDL-C 422

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
            KT   D+ T+ SIL A  ELA+L    Q+HG   +        V N ++  Y KCGN+ 
Sbjct: 423 NKTLKPDATTIASILPAYAELASLREAEQIHGYVTKLKLDSNTFVSNSIVFMYGKCGNLL 482

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            A  +F+ M F +DV+SWNT+I  Y ++G G  ++ L+ +M E G  P+ ST++S+L +C
Sbjct: 483 RAREIFDRMTF-KDVISWNTVIMAYAIHGFGRISIELFSEMREKGFEPNGSTFVSLLLSC 541

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI 525
             AGL N+G   FN M  +  + P  EHYGC++DL+ R G L  A     ++       I
Sbjct: 542 SVAGLVNEGWEYFNSMKRDYNINPGIEHYGCILDLIGRTGNLDHAKNFIEEMPLAPTARI 601

Query: 526 WRALL--------------------------SGCVL-------HVGRFQDAEALRSGSQK 552
           W +LL                          +GC +         GR++D E ++   +K
Sbjct: 602 WGSLLTASRNKGDVELAEIAAEHILSLEHDNTGCYVLLSNMYAEAGRWEDVERIKFHMKK 661

Query: 553 KGIIKIPGISFLNSTSRDF 571
           +G+ K  G S ++ +S+ F
Sbjct: 662 EGLEKSVGCSVVDLSSKTF 680



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 139/539 (25%), Positives = 252/539 (46%), Gaps = 55/539 (10%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D Y  + L+  Y K G I+ AE +F E+P +++VSW+ +I GY   G   +S+  F  M
Sbjct: 159 LDIYIGNSLIIMYAKIGCIESAEMVFREMPVRDLVSWNSMISGYVSVGDGWRSLSCFREM 218

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
             SG+  + F+++G+L A +    L   + IH  M++  LE D                 
Sbjct: 219 QASGIKLDRFSVIGILGACSLEGFLRNGKEIHCQMMRSRLELDVMVQTSLVDMYAKCGRM 278

Query: 106 -----LFEGLKNPYLVSCNAIVAGF-INNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                LF+ + +  +V+ NA++ G+ +N + F+    +     G  L P+ +TM+ ++  
Sbjct: 279 DYAERLFDQITDKSIVAWNAMIGGYSLNAQSFESFAYVRKMQEGGKLHPDWITMINLLPP 338

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C  L +  L + +HG  I+ G +  + +  +++DMY     L  A  +F +M  +++ISW
Sbjct: 339 CAQLEAILLGKSVHGFAIRNGFLPHLVLETALVDMYGECGKLKPAECLFGQMNERNLISW 398

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
             M+  +        A+ +F+++    +  D   + +++   A L  L+  +Q+H  V  
Sbjct: 399 NAMIASYTKNGENRKAMTLFQDLCNKTLKPDATTIASILPAYAELASLREAEQIHGYVTK 458

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
             L S   +SNSI+ MY KCG+L  +R +F+++T K ++SW  +I  Y  +G  R ++  
Sbjct: 459 LKLDSNTFVSNSIVFMYGKCGNLLRAREIFDRMTFKDVISWNTVIMAYAIHGFGRISIEL 518

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN------- 392
           F +MR EK    +  T VS+L          +   + G+  E G+  + S++        
Sbjct: 519 FSEMR-EKGFEPNGSTFVSLL----------LSCSVAGLVNE-GWEYFNSMKRDYNINPG 566

Query: 393 -----CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETA-LALYHKM 446
                C++    + GN+D A    EEM        W +++      G  E A +A  H +
Sbjct: 567 IEHYGCILDLIGRTGNLDHAKNFIEEMPLAPTARIWGSLLTASRNKGDVELAEIAAEHIL 626

Query: 447 TETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGC-VVDLLARA 504
           +   E  ++  Y+ + N    AG   D   I   M +E      ++  GC VVDL ++ 
Sbjct: 627 SL--EHDNTGCYVLLSNMYAEAGRWEDVERIKFHMKKEG----LEKSVGCSVVDLSSKT 679



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 136/296 (45%), Gaps = 36/296 (12%)

Query: 302 LDSSRSVFNQ--ITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT----------- 348
             ++RS  NQ  + E++ VS T  +S YV+ G  + AL+ F  MRQ  T           
Sbjct: 43  FKTARSKRNQSFLVERNSVSLTRALSSYVERGYMKNALDLFENMRQCDTFIWNVMIRGFV 102

Query: 349 ------DSV-------------DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS 389
                 D+V             D+ T   ++ A G L  L    ++HG   ++G      
Sbjct: 103 DNGLFWDAVDFYHRMEFGGVRGDNFTYPFVIKACGGLYDLAEGERVHGKVIKSGLDLDIY 162

Query: 390 VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
           + N LI  Y+K G ++ A +VF EM  +RD+VSWN++I GY   G G  +L+ + +M  +
Sbjct: 163 IGNSLIIMYAKIGCIESAEMVFREMP-VRDLVSWNSMISGYVSVGDGWRSLSCFREMQAS 221

Query: 450 GEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSD 509
           G   D  + + IL AC   G   +G  I  QM+  ++++        +VD+ A+ G +  
Sbjct: 222 GIKLDRFSVIGILGACSLEGFLRNGKEIHCQMM-RSRLELDVMVQTSLVDMYAKCGRMDY 280

Query: 510 ASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFLN 565
           A  L  ++ +      W A++ G  L+   F+    +R   Q+ G +    I+ +N
Sbjct: 281 AERLFDQITDK-SIVAWNAMIGGYSLNAQSFESFAYVRK-MQEGGKLHPDWITMIN 334


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  274 bits (700), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 174/615 (28%), Positives = 297/615 (48%), Gaps = 57/615 (9%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y ++ LL  Y   G + EA  LFD+   K+VVSW+++I GY+  G  +++   F+ M   
Sbjct: 64  YITNTLLKLYAHCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQE 123

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-------------------- 105
            L P+ FT V +L A +    L   R IH  +++ GL +D                    
Sbjct: 124 RLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDA 183

Query: 106 --LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
             +F+ + +   VS   +   +  +   ++++  ++      + P+ +T + V+  C +L
Sbjct: 184 RRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSL 243

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
            +    + IH   ++     DV V+ ++  MY        A ++F  +  +DVI+W  M+
Sbjct: 244 AALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMI 303

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
             FVD     +A   F  M +  +  D      ++S  A  G L RGK++HA+    GL 
Sbjct: 304 RGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLV 363

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
           S++R  N++I MYSK G +  +R VF+++ ++ +VSWT ++  Y       E+   F +M
Sbjct: 364 SDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQM 423

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
            Q+   + + IT + +L A     AL+   ++H    +AG     +V N L+S Y KCG+
Sbjct: 424 LQQGVKA-NKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLAVTNALMSMYFKCGS 482

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           V+ A  VFE M  +RDVV+WNT+I G G NG G  AL  Y  M   G  P+++T++++L+
Sbjct: 483 VEDAIRVFEGMS-MRDVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLS 541

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
           AC    L  +G   F  M ++  + P+++HY C+VD+LARAG L +A  +   +      
Sbjct: 542 ACRVCNLVEEGRRQFAFMSKDYGIVPTEKHYACMVDILARAGHLREAEDVILTIPLKPSA 601

Query: 524 NIWRALLSGCVLH---------------------------------VGRFQDAEALRSGS 550
            +W ALL+ C +H                                  G ++D   LR   
Sbjct: 602 AMWGALLAACRIHCNVEIGERAAEHCLKLEPQNAGLYVSLSAIYAAAGMWRDVAKLRKFM 661

Query: 551 QKKGIIKIPGISFLN 565
           +++G+ K PG S++ 
Sbjct: 662 KERGVKKEPGRSWIE 676



 Score =  187 bits (476), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 113/411 (27%), Positives = 214/411 (52%), Gaps = 13/411 (3%)

Query: 137 LFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYS 196
           +  +    G   ++   + +++ CV     A+ + +H   ++ G+  +V + N++L +Y+
Sbjct: 15  VLQYLHRKGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYA 74

Query: 197 CLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLN 256
               ++ A Q+F +   K V+SW  M+  +     A +A  +F  M++ R+  D    ++
Sbjct: 75  HCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVS 134

Query: 257 LISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKS 316
           ++S  +    L  G+++H +V+  GL ++  + N++I+MY+KCG +  +R VF+ +  + 
Sbjct: 135 ILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRD 194

Query: 317 LVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLH 376
            VSWT +   Y ++G   E+L  +  M QE+      IT +++L+A G LAALE   Q+H
Sbjct: 195 EVSWTTLTGAYAESGYGEESLKTYHAMLQERVRP-SRITYMNVLSACGSLAALEKGKQIH 253

Query: 377 GIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHG 436
               E+ +     V   L   Y KCG    A  VFE + + RDV++WNT+I G+  +G  
Sbjct: 254 AHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSY-RDVIAWNTMIRGFVDSGQL 312

Query: 437 ETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYG- 495
           E A   +H+M E G  PD +TY ++L+AC   G    G  I  +  ++  V  S   +G 
Sbjct: 313 EEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLV--SDVRFGN 370

Query: 496 CVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEAL 546
            ++++ ++AG + DA  +  ++ +       R ++S   L +GR+ D + +
Sbjct: 371 ALINMYSKAGSMKDARQVFDRMPK-------RDVVSWTTL-LGRYADCDQV 413



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 111/409 (27%), Positives = 199/409 (48%), Gaps = 15/409 (3%)

Query: 57  KAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLV 116
           +   H++  G+ PN +    +L   A   ++  AR              LF+   N  +V
Sbjct: 49  QVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQ-------------LFDKFSNKSVV 95

Query: 117 SCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLT 176
           S N +++G+ +  L Q+A  LF   +   L P+  T ++++  C +         IH   
Sbjct: 96  SWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGREIHVRV 155

Query: 177 IKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDAL 236
           ++ GL  D +V N+++ MY+    +  A ++F  M  +D +SWT + G + +  Y  ++L
Sbjct: 156 MEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYGEESL 215

Query: 237 KIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMY 296
           K +  M + R+    +  +N++S    L  L++GKQ+HA +V     S++R+S ++  MY
Sbjct: 216 KTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMY 275

Query: 297 SKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITL 356
            KCG    +R VF  ++ + +++W  +I G+V +G   EA   F +M +E   + D  T 
Sbjct: 276 MKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGV-APDRATY 334

Query: 357 VSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGF 416
            ++L+A      L    ++H  A + G        N LI+ YSK G++  A  VF+ M  
Sbjct: 335 TTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMP- 393

Query: 417 LRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            RDVVSW T++  Y        +   + +M + G   +  TY+ +L AC
Sbjct: 394 KRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKAC 442


>gi|357480155|ref|XP_003610363.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511418|gb|AES92560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 734

 Score =  274 bits (700), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 174/559 (31%), Positives = 286/559 (51%), Gaps = 30/559 (5%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPE--KNVVSWSIVIHGYSINGFHEK---SMKAFS 60
           Y ++  L+ Y K+  +  A  LFD I +  K+ VSW+ +I+ +S N        ++  F 
Sbjct: 47  YVTNTFLNLYAKTNHLSHALTLFDSINDNDKDDVSWNSLINAFSQNHSSSSSSFAISLFR 106

Query: 61  HMMLSG-LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-------------- 105
            MM +  ++PN+ T+ GV  AA+ L ++   +  H + VK G   D              
Sbjct: 107 RMMRANNVIPNAHTLAGVFSAASNLSDVVAGKQAHSVAVKTGCSGDVYVGSSLLNMYCKT 166

Query: 106 --------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
                   LF+ +     VS   +++G+ ++ +  +AV +F   R    + N   + +V+
Sbjct: 167 GFVFDARKLFDRMPERNTVSWATMISGYASSDIADKAVEVFELMRREEEIQNEFALTSVL 226

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
               +         +H L IK GL+  VSV N+++ MY+    LD A++ F     K+ I
Sbjct: 227 SALTSDVFVYTGRQVHSLAIKNGLLAIVSVANALVTMYAKCGSLDDAVRTFEFSGDKNSI 286

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           +W+ M+  +     +  ALK+F +M  S ++     L+ +I+  + L  +  GKQ+H+  
Sbjct: 287 TWSAMVTGYAQGGDSDKALKLFNKMHSSGVLPSEFTLVGVINACSDLCAVVEGKQMHSFA 346

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
              G   +L + ++++ MY+KCG L  +R  F  + +  +V WT+II+GYVQNG     L
Sbjct: 347 FKLGFGLQLYVLSAVVDMYAKCGSLADARKGFECVQQPDVVLWTSIITGYVQNGDYEGGL 406

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
           N + KM+ E+    + +T+ S+L A   LAAL+   Q+H    + GF     + + L + 
Sbjct: 407 NLYGKMQMERVIP-NELTMASVLRACSSLAALDQGKQMHARIIKYGFKLEVPIGSALSAM 465

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           Y+KCG++D  Y++F  M   RDV+SWN +I G   NGHG  AL L+ KM   G  PD  T
Sbjct: 466 YTKCGSLDDGYLIFWRMPS-RDVISWNAMISGLSQNGHGNKALELFEKMLLEGIKPDPVT 524

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL 517
           ++++L+AC H GL + G   F  M +E  + P  EHY C+VD+L+RAG L++A       
Sbjct: 525 FVNLLSACSHMGLVDRGWEYFKMMFDEFNIAPMVEHYACMVDILSRAGKLNEAKEFIESA 584

Query: 518 LEGMGPNIWRALLSGCVLH 536
               G  +WR LL  C  H
Sbjct: 585 TVDHGLCLWRILLGACKNH 603



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 142/495 (28%), Positives = 246/495 (49%), Gaps = 40/495 (8%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  S LL+ Y K+G + +A  LFD +PE+N VSW+ +I GY+ +   +K+++ F  M 
Sbjct: 152 DVYVGSSLLNMYCKTGFVFDARKLFDRMPERNTVSWATMISGYASSDIADKAVEVFELMR 211

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL--------------------- 102
               + N F +  VL A      +   R +H L +K GL                     
Sbjct: 212 REEEIQNEFALTSVLSALTSDVFVYTGRQVHSLAIKNGLLAIVSVANALVTMYAKCGSLD 271

Query: 103 ---ESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
               +  F G KN   ++ +A+V G+       +A+ LFN    SG++P+  T++ VI  
Sbjct: 272 DAVRTFEFSGDKNS--ITWSAMVTGYAQGGDSDKALKLFNKMHSSGVLPSEFTLVGVINA 329

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C  L +    + +H    KLG  L + V ++V+DMY+    L  A + F  ++  DV+ W
Sbjct: 330 CSDLCAVVEGKQMHSFAFKLGFGLQLYVLSAVVDMYAKCGSLADARKGFECVQQPDVVLW 389

Query: 220 TRMMGLFV-DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           T ++  +V + +Y G  L ++ +M+  R+I + + + +++   + L  L +GKQ+HA+++
Sbjct: 390 TSIITGYVQNGDYEG-GLNLYGKMQMERVIPNELTMASVLRACSSLAALDQGKQMHARII 448

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
             G + E+ + +++ AMY+KCG LD    +F ++  + ++SW A+ISG  QNG   +AL 
Sbjct: 449 KYGFKLEVPIGSALSAMYTKCGSLDDGYLIFWRMPSRDVISWNAMISGLSQNGHGNKALE 508

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN--CLIS 396
            F KM  E     D +T V++L+A   +  ++   +   + F+  F     V++  C++ 
Sbjct: 509 LFEKMLLEGIKP-DPVTFVNLLSACSHMGLVDRGWEYFKMMFDE-FNIAPMVEHYACMVD 566

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALY--HKMTETGEVPD 454
             S+ G ++ A    E       +  W  I+ G   N H    L +Y   K+ E G  P+
Sbjct: 567 ILSRAGKLNEAKEFIESATVDHGLCLWR-ILLGACKN-HRNYELGVYAGEKLVELGS-PE 623

Query: 455 SSTYL---SILNACG 466
           SS Y+   SI  A G
Sbjct: 624 SSAYVLLSSIYTALG 638



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 131/276 (47%), Gaps = 22/276 (7%)

Query: 269 RGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQI--TEKSLVSWTAIISG 326
           +G+ LHA+++  G  S + ++N+ + +Y+K   L  + ++F+ I   +K  VSW ++I+ 
Sbjct: 29  KGRTLHARILKTGSISSIYVTNTFLNLYAKTNHLSHALTLFDSINDNDKDDVSWNSLINA 88

Query: 327 YVQNGCARE---ALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG 383
           + QN  +     A++ F +M +      ++ TL  + +A+  L+ +    Q H +A + G
Sbjct: 89  FSQNHSSSSSSFAISLFRRMMRANNVIPNAHTLAGVFSAASNLSDVVAGKQAHSVAVKTG 148

Query: 384 FPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALY 443
                 V + L++ Y K G V  A  +F+ M   R+ VSW T+I GY  +   + A+ ++
Sbjct: 149 CSGDVYVGSSLLNMYCKTGFVFDARKLFDRMP-ERNTVSWATMISGYASSDIADKAVEVF 207

Query: 444 HKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPS----QEHYGCVVD 499
             M    E+ +     S+L+A     LT+D  V   + +    +K            +V 
Sbjct: 208 ELMRREEEIQNEFALTSVLSA-----LTSDVFVYTGRQVHSLAIKNGLLAIVSVANALVT 262

Query: 500 LLARAGCLSDASGLAGKLLEGMGPN---IWRALLSG 532
           + A+ G L DA     +  E  G      W A+++G
Sbjct: 263 MYAKCGSLDDAV----RTFEFSGDKNSITWSAMVTG 294


>gi|218187045|gb|EEC69472.1| hypothetical protein OsI_38669 [Oryza sativa Indica Group]
          Length = 1084

 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 167/557 (29%), Positives = 276/557 (49%), Gaps = 48/557 (8%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C + +  + L++ Y + G  + AE +F ++P ++ V+++ +I G++     E +++ F  
Sbjct: 175 CSETFVGNALITLYLRCGSFRLAERVFYDMPHRDTVTFNTLISGHAQCAHGEHALEIFEE 234

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-LFEGLKNPYLVSC-- 118
           M  SGL P+  T+  +L A A L +L+    +H  + K G+ SD + EG      V C  
Sbjct: 235 MQSSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGMSSDYIMEGSLLDLYVKCGD 294

Query: 119 -------------------NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                              N I+  F       ++  LF   + +G+ PN  T   ++R 
Sbjct: 295 VETALVIFNLGNRTNVVLWNLILVAFGQINDLAKSFELFCQMQTAGIRPNQFTYPCILRT 354

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C   G   L E IH L++K G   D+ V+  ++DMYS    L+ A ++   ++ KDV+SW
Sbjct: 355 CTCTGEIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSW 414

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           T M+  +V  EY  DAL  F+EM+K  I  D + L + IS  A +  +++G Q+HA+V +
Sbjct: 415 TSMIAGYVQHEYCKDALAAFKEMQKCGIWPDNIGLASAISGCAGIKAMRQGLQIHARVYV 474

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G   ++ + N+++ +Y++CG +  + S F +I  K  ++W  ++SG+ Q+G   EAL  
Sbjct: 475 SGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKV 534

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           F++M Q      +  T VS L+AS  LA ++   Q+H    + G      V N LIS Y 
Sbjct: 535 FMRMDQSGVKH-NVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYG 593

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           KCG+ + A + F EM   R+ VSWNTII     +G G  AL  + +M +           
Sbjct: 594 KCGSFEDAKMEFSEMS-ERNEVSWNTIITSCSQHGRGLEALDFFDQMKK----------- 641

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519
                        +GL  F  M ++  ++P  +HY CV+D+  RAG L  A     ++  
Sbjct: 642 -------------EGLSYFKSMSDKYGIRPRPDHYACVIDIFGRAGQLDRAKKFVEEMPI 688

Query: 520 GMGPNIWRALLSGCVLH 536
                +WR LLS C +H
Sbjct: 689 AADAMVWRTLLSACKVH 705



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 153/584 (26%), Positives = 284/584 (48%), Gaps = 33/584 (5%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+  Y K+G +  A  +F+E+  ++ VSW  ++ GY+ NG  E+++  +  M  +G++P 
Sbjct: 83  LIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALWLYRQMHRAGVVPT 142

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPYL------------- 115
            + +  VL +    +     RS+H    K G  S+ F G  L   YL             
Sbjct: 143 PYVLSSVLSSCTKAELFAQGRSVHAQGYKQGFCSETFVGNALITLYLRCGSFRLAERVFY 202

Query: 116 -------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
                  V+ N +++G       + A+ +F   + SGL P+ VT+ +++  C +LG    
Sbjct: 203 DMPHRDTVTFNTLISGHAQCAHGEHALEIFEEMQSSGLSPDCVTISSLLAACASLGDLQK 262

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
              +H    K G+  D  +  S+LD+Y    D++ A+ IF      +V+ W  ++  F  
Sbjct: 263 GTQLHSYLFKAGMSSDYIMEGSLLDLYVKCGDVETALVIFNLGNRTNVVLWNLILVAFGQ 322

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
                 + ++F +M+ + I  +      ++      G++  G+Q+H+  V  G +S++ +
Sbjct: 323 INDLAKSFELFCQMQTAGIRPNQFTYPCILRTCTCTGEIDLGEQIHSLSVKTGFESDMYV 382

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
           S  +I MYSK G L+ +R V   + EK +VSWT++I+GYVQ+   ++AL  F +M Q+  
Sbjct: 383 SGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHEYCKDALAAFKEM-QKCG 441

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
              D+I L S ++    + A+   LQ+H   + +G+    S+ N L++ Y++CG +  A+
Sbjct: 442 IWPDNIGLASAISGCAGIKAMRQGLQIHARVYVSGYSGDVSIWNALVNLYARCGRIREAF 501

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
             FEE+   +D ++WN ++ G+  +G  E AL ++ +M ++G   +  T++S L+A  + 
Sbjct: 502 SSFEEIEH-KDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANL 560

Query: 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRA 528
                G  I  ++I+      + E    ++ L  + G   DA     ++ E      W  
Sbjct: 561 AEIKQGKQIHARVIKTGHSFET-EVGNALISLYGKCGSFEDAKMEFSEMSE-RNEVSWNT 618

Query: 529 LLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFLNSTSRDFG 572
           +++ C  H GR    EAL    Q    +K  G+S+  S S  +G
Sbjct: 619 IITSCSQH-GR--GLEALDFFDQ----MKKEGLSYFKSMSDKYG 655



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 121/441 (27%), Positives = 204/441 (46%), Gaps = 18/441 (4%)

Query: 122 VAGFINNKLFQQAVLLF--NFFRGSGLVPNAVTMLTVIRGCVALGSR-ALCELIHGLTIK 178
           +AGF+  +   + + LF     +  GL P  +     +R C   G R  +   IH   I 
Sbjct: 13  LAGFLAQEDPAKVLSLFADKARQHGGLGP--LDFACALRACRGNGRRWQVVPEIHAKAIT 70

Query: 179 LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKI 238
            GL  D  V N ++D+YS    +  A ++F E+  +D +SW  M+  +       +AL +
Sbjct: 71  RGLGKDRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALWL 130

Query: 239 FREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSK 298
           +R+M ++ ++     L +++S         +G+ +HAQ    G  SE  + N++I +Y +
Sbjct: 131 YRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRSVHAQGYKQGFCSETFVGNALITLYLR 190

Query: 299 CGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVS 358
           CG    +  VF  +  +  V++  +ISG+ Q      AL  F +M Q    S D +T+ S
Sbjct: 191 CGSFRLAERVFYDMPHRDTVTFNTLISGHAQCAHGEHALEIFEEM-QSSGLSPDCVTISS 249

Query: 359 ILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLR 418
           +L A   L  L+   QLH   F+AG      ++  L+  Y KCG+V+ A ++F  +G   
Sbjct: 250 LLAACASLGDLQKGTQLHSYLFKAGMSSDYIMEGSLLDLYVKCGDVETALVIF-NLGNRT 308

Query: 419 DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIF 478
           +VV WN I+  +G       +  L+ +M   G  P+  TY  IL  C     T  G +  
Sbjct: 309 NVVLWNLILVAFGQINDLAKSFELFCQMQTAGIRPNQFTYPCILRTC-----TCTGEIDL 363

Query: 479 NQMIEENKVKPSQEH----YGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCV 534
            + I    VK   E      G ++D+ ++ G L  A  +  ++L+      W ++++G V
Sbjct: 364 GEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVL-EMLKEKDVVSWTSMIAGYV 422

Query: 535 LHVGRFQDAEALRSGSQKKGI 555
            H    +DA A     QK GI
Sbjct: 423 QH-EYCKDALAAFKEMQKCGI 442


>gi|297744484|emb|CBI37746.3| unnamed protein product [Vitis vinifera]
          Length = 2090

 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 171/559 (30%), Positives = 290/559 (51%), Gaps = 28/559 (5%)

Query: 1   PCIDPYNSS--KLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKA 58
           P  D   S+   +L  Y K+G +  A  +FD +  ++ VSW+I+IHG+   G  +K +  
Sbjct: 64  PGFDSLTSTGNSVLDFYMKTGALDSALFVFDSMRSRDSVSWNIMIHGHLSRGASDKGLWW 123

Query: 59  FSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL---------------- 102
           F    +    PN  T+V  + A   L  +E    +HG +++ G                 
Sbjct: 124 FRQARVIAFEPNVSTLVLAIHACRSLGAMEEGLKMHGYIIRSGFLDIPSVQNSLLSMYAD 183

Query: 103 -----ESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLF-NFFRGSGLVPNAVTMLTV 156
                  +LF+ +    ++S + ++ G++     + A+ LF      + +  + +TM++V
Sbjct: 184 NDMERAEELFDEMCERDVISWSVMIGGYVQTGEAKMALQLFLEMTSNASIELDGITMVSV 243

Query: 157 IRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
           ++ C   G  ++   +HG+ I  GL  D+ V NS++DMYS   D ++A + F EM C++ 
Sbjct: 244 LKACANTGDISMGRSVHGVVICRGLDYDLFVGNSIIDMYSKCDDHESAFKAFNEMPCRNT 303

Query: 217 ISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQ 276
           +SW  ++   V  E   +AL +F  M K+    D V L+NL+       D  + K +H+ 
Sbjct: 304 VSWNSIISGLVRTEKHSEALSLFYSMGKAGFRADEVTLVNLLQSCKYFVDPFQCKFIHSI 363

Query: 277 VVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
           V+  G +    + NS+I  YSKC  ++ +  +F+++  K  VSW+A+I+G+   G   EA
Sbjct: 364 VIRWGYELNEFVINSLIDAYSKCDLIELAWKLFDRLKTKDTVSWSAMIAGFNHCGKPDEA 423

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
           +  F +M Q + +  + +T++S+L A    A L+     HGIA   G     +V   ++ 
Sbjct: 424 IALFQEMNQAQ-EKPNGVTILSLLEAFSVSADLKRSKWAHGIAIRRGLAAEVAVGTAILD 482

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
            Y+KCG + L+   F+++   +++VSW  +I   G+NG    ALAL  +M   G  P+  
Sbjct: 483 MYAKCGEIGLSRKAFDQIP-EKNIVSWGAMIAACGMNGLARDALALLSEMKLHGLKPNVV 541

Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK 516
           T LS+L+AC H GL  +GL  F  M++++ V+P  EHY C+VD+L+RAG L+ A  L  K
Sbjct: 542 TTLSVLSACSHGGLVEEGLSFFENMVQDHGVEPGLEHYSCMVDMLSRAGKLNSAMNLIEK 601

Query: 517 LLEGM--GPNIWRALLSGC 533
           + E M  G  +W ALLS C
Sbjct: 602 MPERMRDGAGLWGALLSAC 620



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 95/411 (23%), Positives = 187/411 (45%), Gaps = 30/411 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + ++  Y K    + A   F+E+P +N VSW+ +I G      H +++  F  M 
Sbjct: 271 DLFVGNSIIDMYSKCDDHESAFKAFNEMPCRNTVSWNSIISGLVRTEKHSEALSLFYSMG 330

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
            +G   +  T+V +L +     +    + IH +++++G E +                  
Sbjct: 331 KAGFRADEVTLVNLLQSCKYFVDPFQCKFIHSIVIRWGYELNEFVINSLIDAYSKCDLIE 390

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               LF+ LK    VS +A++AGF +     +A+ LF     +   PN VT+L+++    
Sbjct: 391 LAWKLFDRLKTKDTVSWSAMIAGFNHCGKPDEAIALFQEMNQAQEKPNGVTILSLLEAFS 450

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
                   +  HG+ I+ GL  +V+V  ++LDMY+   ++  + + F ++  K+++SW  
Sbjct: 451 VSADLKRSKWAHGIAIRRGLAAEVAVGTAILDMYAKCGEIGLSRKAFDQIPEKNIVSWGA 510

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG- 280
           M+        A DAL +  EM+   +  + V  L+++S  +  G ++ G      +V   
Sbjct: 511 MIAACGMNGLARDALALLSEMKLHGLKPNVVTTLSVLSACSHGGLVEEGLSFFENMVQDH 570

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVS---WTAIISGYVQNGCAR-EA 336
           G++  L   + ++ M S+ G L+S+ ++  ++ E+       W A++S    +G +R  A
Sbjct: 571 GVEPGLEHYSCMVDMLSRAGKLNSAMNLIEKMPERMRDGAGLWGALLSACRSSGNSRLGA 630

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASG---ELAALEICLQLHGIAFEAGF 384
              F  +  E   S       S+  ASG   + A +   ++  G+   AG+
Sbjct: 631 GAAFRVLELEPQSSAGYFLASSMYAASGLWADAARMRWLVKARGVRVVAGY 681



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 69/200 (34%), Positives = 105/200 (52%), Gaps = 8/200 (4%)

Query: 273 LHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC 332
           L A   L G  S     NS++  Y K G LDS+  VF+ +  +  VSW  +I G++  G 
Sbjct: 57  LKACSSLPGFDSLTSTGNSVLDFYMKTGALDSALFVFDSMRSRDSVSWNIMIHGHLSRGA 116

Query: 333 AREALNQFIKMRQEKTDSVDS--ITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV 390
           + + L  F   RQ +  + +    TLV  + A   L A+E  L++HG    +GF    SV
Sbjct: 117 SDKGLWWF---RQARVIAFEPNVSTLVLAIHACRSLGAMEEGLKMHGYIIRSGFLDIPSV 173

Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
           QN L+S Y+   +++ A  +F+EM   RDV+SW+ +I GY   G  + AL L+ +MT   
Sbjct: 174 QNSLLSMYAD-NDMERAEELFDEMC-ERDVISWSVMIGGYVQTGEAKMALQLFLEMTSNA 231

Query: 451 EVP-DSSTYLSILNACGHAG 469
            +  D  T +S+L AC + G
Sbjct: 232 SIELDGITMVSVLKACANTG 251


>gi|414586383|tpg|DAA36954.1| TPA: hypothetical protein ZEAMMB73_991125 [Zea mays]
          Length = 1021

 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 171/621 (27%), Positives = 311/621 (50%), Gaps = 72/621 (11%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           S L++ Y K G I +A+ +FD   EKN+V W+ +++G+  N   E++++ F +M  + L 
Sbjct: 363 SSLINLYVKHGCISDAKKVFDFSTEKNIVMWNAILYGFVQNELQEETIQMFQYMRRADLE 422

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYL------------- 115
            + FT V VL A   L +L+L R +H + +K G+++DLF  + N  L             
Sbjct: 423 ADDFTFVSVLGACINLYSLDLGRQVHCITIKNGMDADLF--VANAMLDMYSKLGAIDVAK 480

Query: 116 -----------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
                      VS NA++ G  +N+   +A+ +    +  G+  + V+  T I  C  + 
Sbjct: 481 ALFSLIPVKDSVSWNALIVGLAHNEEEGEAINMLKRMKFYGIALDEVSFATAINACSNIW 540

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
           +    + IH  +IK  +  + +V +S++D+YS   D++++ ++   ++   ++    ++ 
Sbjct: 541 AIETGKQIHSASIKYNVCSNHAVGSSLIDLYSKFGDVESSRKVLAHVDASSIVPINALIT 600

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLIS-----VNAILGDLKRGKQLHAQVVL 279
             V      +A+++F+++ K           +++S     V++++G     KQ+H   + 
Sbjct: 601 GLVQNNREDEAIELFQQVLKDGFKPSNFTFTSILSGCTRPVSSVIG-----KQVHCYTLK 655

Query: 280 GG-LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE-KSLVSWTAIISGYVQNGCAREAL 337
              L  +  L  S++ +Y KC  L+ +  +  ++ + K+LV WTA ISGY QNG + ++L
Sbjct: 656 SAILNQDTSLGISLVGIYLKCKLLEDANKLLEEVPDHKNLVEWTATISGYAQNGYSVQSL 715

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
             F +MR     S D  T  S+L A  E+AAL    ++HG+  ++GF  Y +  + L+  
Sbjct: 716 VMFWRMRSYDVRS-DEATFTSVLKACSEMAALTDGKEIHGLIVKSGFVSYETATSALMDM 774

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           YSKCG+V  ++ +F+E+   ++++ WN++I G+  NG+   AL L+ KM E+   PD  T
Sbjct: 775 YSKCGDVISSFEIFKELKNRQNIMPWNSMIVGFAKNGYANEALLLFQKMQESQIKPDDVT 834

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL 517
            L +L AC HAGL ++GL  F+ M +   + P  +HY C++DLL R G L  A  +  +L
Sbjct: 835 LLGVLIACSHAGLISEGLHFFDSMSQVYGIVPRVDHYACLIDLLGRGGHLQKAQEVIDQL 894

Query: 518 LEGMGPNIWRALLSGCVLH---------------------------------VGRFQDAE 544
                  IW   L+ C +H                                  G + +A+
Sbjct: 895 PFRADGVIWATYLAACQMHKDEERGKVAAKKLVEMEPQSSSTYVFLSSLHAAAGNWVEAK 954

Query: 545 ALRSGSQKKGIIKIPGISFLN 565
             R   ++KG++K PG S++ 
Sbjct: 955 VAREAMREKGVMKFPGCSWIT 975



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 115/467 (24%), Positives = 230/467 (49%), Gaps = 21/467 (4%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C   +  + L+  Y K G++ +A  +FD I   + + W+ +I GY   G +++++  FS 
Sbjct: 189 CSSVFCQAGLVDMYAKCGEVDDARRMFDGIACPDTICWTSMIAGYHRVGRYQQALALFSR 248

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAI 121
           M   G +P+  T V ++   A +  L  AR+             L + ++    V+ NA+
Sbjct: 249 MEKMGSVPDQVTCVTIISTLASMGRLGDART-------------LLKRIRMTSTVAWNAV 295

Query: 122 VAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGL 181
           +A +  + L  +   L+   +  GL+P   T  +++     + +      IH   +K GL
Sbjct: 296 IASYSQSGLDSEVFGLYKDMKKQGLMPTRSTFASILSAAANMTAFDEGRQIHATAVKHGL 355

Query: 182 ILDVSVNNSVLDMY---SCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKI 238
             +V V +S++++Y    C+ D   A ++F     K+++ W  ++  FV  E   + +++
Sbjct: 356 DANVFVGSSLINLYVKHGCISD---AKKVFDFSTEKNIVMWNAILYGFVQNELQEETIQM 412

Query: 239 FREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSK 298
           F+ MR++ +  D    ++++     L  L  G+Q+H   +  G+ ++L ++N+++ MYSK
Sbjct: 413 FQYMRRADLEADDFTFVSVLGACINLYSLDLGRQVHCITIKNGMDADLFVANAMLDMYSK 472

Query: 299 CGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVS 358
            G +D ++++F+ I  K  VSW A+I G   N    EA+N   +M+     ++D ++  +
Sbjct: 473 LGAIDVAKALFSLIPVKDSVSWNALIVGLAHNEEEGEAINMLKRMKFYGI-ALDEVSFAT 531

Query: 359 ILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLR 418
            + A   + A+E   Q+H  + +       +V + LI  YSK G+V+ +  V   +    
Sbjct: 532 AINACSNIWAIETGKQIHSASIKYNVCSNHAVGSSLIDLYSKFGDVESSRKVLAHVD-AS 590

Query: 419 DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            +V  N +I G   N   + A+ L+ ++ + G  P + T+ SIL+ C
Sbjct: 591 SIVPINALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFTSILSGC 637



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 129/517 (24%), Positives = 235/517 (45%), Gaps = 40/517 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + ++ +L  Y K G I  A+ LF  IP K+ VSW+ +I G + N    +++     M 
Sbjct: 459 DLFVANAMLDMYSKLGAIDVAKALFSLIPVKDSVSWNALIVGLAHNEEEGEAINMLKRMK 518

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES---------DLFEGLKN-- 112
             G+  +  +    + A + +  +E  + IH   +K+ + S         DL+    +  
Sbjct: 519 FYGIALDEVSFATAINACSNIWAIETGKQIHSASIKYNVCSNHAVGSSLIDLYSKFGDVE 578

Query: 113 -----------PYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                        +V  NA++ G + N    +A+ LF      G  P+  T  +++ GC 
Sbjct: 579 SSRKVLAHVDASSIVPINALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFTSILSGCT 638

Query: 162 ALGSRALCELIHGLTIKLGLI-LDVSVNNSVLDMYSCLMDLDAAIQIFREM-ECKDVISW 219
              S  + + +H  T+K  ++  D S+  S++ +Y     L+ A ++  E+ + K+++ W
Sbjct: 639 RPVSSVIGKQVHCYTLKSAILNQDTSLGISLVGIYLKCKLLEDANKLLEEVPDHKNLVEW 698

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           T  +  +    Y+  +L +F  MR   +  D     +++   + +  L  GK++H  +V 
Sbjct: 699 TATISGYAQNGYSVQSLVMFWRMRSYDVRSDEATFTSVLKACSEMAALTDGKEIHGLIVK 758

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK-SLVSWTAIISGYVQNGCAREALN 338
            G  S    +++++ MYSKCGD+ SS  +F ++  + +++ W ++I G+ +NG A EAL 
Sbjct: 759 SGFVSYETATSALMDMYSKCGDVISSFEIFKELKNRQNIMPWNSMIVGFAKNGYANEALL 818

Query: 339 QFIKMRQEKTDSVDSITLVSILTA-------SGELAALEICLQLHGIAFEAGFPRYRSVQ 391
            F KM QE     D +TL+ +L A       S  L   +   Q++GI      PR     
Sbjct: 819 LFQKM-QESQIKPDDVTLLGVLIACSHAGLISEGLHFFDSMSQVYGIV-----PRVDHYA 872

Query: 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE 451
            CLI    + G++  A  V +++ F  D V W T +    ++   E       K+ E  E
Sbjct: 873 -CLIDLLGRGGHLQKAQEVIDQLPFRADGVIWATYLAACQMHKDEERGKVAAKKLVEM-E 930

Query: 452 VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVK 488
              SSTY+ + +    AG   +  V    M E+  +K
Sbjct: 931 PQSSSTYVFLSSLHAAAGNWVEAKVAREAMREKGVMK 967



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 137/321 (42%), Gaps = 37/321 (11%)

Query: 145 GLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAA 204
           G  P+   +  V+  C  LG+      +H   +K G    V     ++DMY+   ++D A
Sbjct: 152 GSTPDQFGIAVVLSACSRLGALEHGRQVHCDVLKSGFCSSVFCQAGLVDMYAKCGEVDDA 211

Query: 205 IQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAIL 264
            ++F  + C D I WT M+  +        AL +F  M K   + D V  + +IS  A +
Sbjct: 212 RRMFDGIACPDTICWTSMIAGYHRVGRYQQALALFSRMEKMGSVPDQVTCVTIISTLASM 271

Query: 265 GDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAII 324
           G L                                GD   +R++  +I   S V+W A+I
Sbjct: 272 GRL--------------------------------GD---ARTLLKRIRMTSTVAWNAVI 296

Query: 325 SGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGF 384
           + Y Q+G   E    +  M+++      S T  SIL+A+  + A +   Q+H  A + G 
Sbjct: 297 ASYSQSGLDSEVFGLYKDMKKQGLMPTRS-TFASILSAAANMTAFDEGRQIHATAVKHGL 355

Query: 385 PRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH 444
                V + LI+ Y K G +  A  VF +    +++V WN I+YG+  N   E  + ++ 
Sbjct: 356 DANVFVGSSLINLYVKHGCISDAKKVF-DFSTEKNIVMWNAILYGFVQNELQEETIQMFQ 414

Query: 445 KMTETGEVPDSSTYLSILNAC 465
            M       D  T++S+L AC
Sbjct: 415 YMRRADLEADDFTFVSVLGAC 435



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 91/380 (23%), Positives = 162/380 (42%), Gaps = 64/380 (16%)

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC-----KDVISWTRMM 223
           C ++H   ++LGL L   + ++++D+Y     +  A   +R + C         + + ++
Sbjct: 72  CGVLHARILRLGLPLRGRLGDALVDLYGRSGRVGYA---WRALACCTGAPASSAAASSVL 128

Query: 224 GLFVDFEYAGDALKIFREMRKS-RIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL 282
                     D L  F+ +R S     D   +  ++S  + LG L+ G+Q+H  V+  G 
Sbjct: 129 SCHARSGSPRDVLDAFQRIRCSIGSTPDQFGIAVVLSACSRLGALEHGRQVHCDVLKSGF 188

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
            S +     ++ MY+KCG++D +R +F+ I     + WT++I+GY + G  ++AL  F +
Sbjct: 189 CSSVFCQAGLVDMYAKCGEVDDARRMFDGIACPDTICWTSMIAGYHRVGRYQQALALFSR 248

Query: 343 MRQEKT--DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
           M +  +  D V  +T++S L + G L      L+           R R            
Sbjct: 249 MEKMGSVPDQVTCVTIISTLASMGRLGDARTLLK-----------RIR------------ 285

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
                           +   V+WN +I  Y  +G       LY  M + G +P  ST+ S
Sbjct: 286 ----------------MTSTVAWNAVIASYSQSGLDSEVFGLYKDMKKQGLMPTRSTFAS 329

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY----GCVVDLLARAGCLSDASGLAGK 516
           IL+A  +    ++G     + I    VK   +        +++L  + GC+SDA  +   
Sbjct: 330 ILSAAANMTAFDEG-----RQIHATAVKHGLDANVFVGSSLINLYVKHGCISDAKKVFDF 384

Query: 517 LLEGMGPNI--WRALLSGCV 534
             E    NI  W A+L G V
Sbjct: 385 STE---KNIVMWNAILYGFV 401


>gi|225428280|ref|XP_002279627.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17210-like [Vitis vinifera]
          Length = 742

 Score =  273 bits (699), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 168/547 (30%), Positives = 286/547 (52%), Gaps = 26/547 (4%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           +L  Y K+G +  A  +FD +  ++ VSW+I+IHG+   G  +K +  F    +    PN
Sbjct: 90  VLDFYMKTGALDSALFVFDSMRSRDSVSWNIMIHGHLSRGASDKGLWWFRQARVIAFEPN 149

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGL---------------------ESDLFEG 109
             T+V  + A   L  +E    +HG +++ G                        +LF+ 
Sbjct: 150 VSTLVLAIHACRSLGAMEEGLKMHGYIIRSGFLDIPSVQNSLLSMYADNDMERAEELFDE 209

Query: 110 LKNPYLVSCNAIVAGFINNKLFQQAVLLF-NFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
           +    ++S + ++ G++     + A+ LF      + +  + +TM++V++ C   G  ++
Sbjct: 210 MCERDVISWSVMIGGYVQTGEAKMALQLFLEMTSNASIELDGITMVSVLKACANTGDISM 269

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
              +HG+ I  GL  D+ V NS++DMYS   D ++A + F EM C++ +SW  ++   V 
Sbjct: 270 GRSVHGVVICRGLDYDLFVGNSIIDMYSKCDDHESAFKAFNEMPCRNTVSWNSIISGLVR 329

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
            E   +AL +F  M K+    D V L+NL+       D  + K +H+ V+  G +    +
Sbjct: 330 TEKHSEALSLFYSMGKAGFRADEVTLVNLLQSCKYFVDPFQCKFIHSIVIRWGYELNEFV 389

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
            NS+I  YSKC  ++ +  +F+++  K  VSW+A+I+G+   G   EA+  F +M Q + 
Sbjct: 390 INSLIDAYSKCDLIELAWKLFDRLKTKDTVSWSAMIAGFNHCGKPDEAIALFQEMNQAQ- 448

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
           +  + +T++S+L A    A L+     HGIA   G     +V   ++  Y+KCG + L+ 
Sbjct: 449 EKPNGVTILSLLEAFSVSADLKRSKWAHGIAIRRGLAAEVAVGTAILDMYAKCGEIGLSR 508

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
             F+++   +++VSW  +I   G+NG    ALAL  +M   G  P+  T LS+L+AC H 
Sbjct: 509 KAFDQIP-EKNIVSWGAMIAACGMNGLARDALALLSEMKLHGLKPNVVTTLSVLSACSHG 567

Query: 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM--GPNIW 526
           GL  +GL  F  M++++ V+P  EHY C+VD+L+RAG L+ A  L  K+ E M  G  +W
Sbjct: 568 GLVEEGLSFFENMVQDHGVEPGLEHYSCMVDMLSRAGKLNSAMNLIEKMPERMRDGAGLW 627

Query: 527 RALLSGC 533
            ALLS C
Sbjct: 628 GALLSAC 634



 Score =  198 bits (503), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 130/439 (29%), Positives = 232/439 (52%), Gaps = 36/439 (8%)

Query: 5   PYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML 64
           P   + LLS Y     ++ AE LFDE+ E++V+SWS++I GY   G  + +++ F  M  
Sbjct: 185 PSVQNSLLSMY-ADNDMERAEELFDEMCERDVISWSVMIGGYVQTGEAKMALQLFLEMTS 243

Query: 65  SGLLP-NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG-------------- 109
           +  +  +  TMV VL A A   ++ + RS+HG+++  GL+ DLF G              
Sbjct: 244 NASIELDGITMVSVLKACANTGDISMGRSVHGVVICRGLDYDLFVGNSIIDMYSKCDDHE 303

Query: 110 --------LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                   +     VS N+I++G +  +   +A+ LF     +G   + VT++ +++ C 
Sbjct: 304 SAFKAFNEMPCRNTVSWNSIISGLVRTEKHSEALSLFYSMGKAGFRADEVTLVNLLQSCK 363

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
                  C+ IH + I+ G  L+  V NS++D YS    ++ A ++F  ++ KD +SW+ 
Sbjct: 364 YFVDPFQCKFIHSIVIRWGYELNEFVINSLIDAYSKCDLIELAWKLFDRLKTKDTVSWSA 423

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+  F       +A+ +F+EM +++   + V +L+L+   ++  DLKR K  H   +  G
Sbjct: 424 MIAGFNHCGKPDEAIALFQEMNQAQEKPNGVTILSLLEAFSVSADLKRSKWAHGIAIRRG 483

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           L +E+ +  +I+ MY+KCG++  SR  F+QI EK++VSW A+I+    NG AR+AL    
Sbjct: 484 LAAEVAVGTAILDMYAKCGEIGLSRKAFDQIPEKNIVSWGAMIAACGMNGLARDALALLS 543

Query: 342 KMRQE--KTDSVDSITLVSILTASG----ELAALEICLQLHGIAFEAGFPRYRSVQNCLI 395
           +M+    K + V +++++S  +  G     L+  E  +Q HG+  E G   Y    +C++
Sbjct: 544 EMKLHGLKPNVVTTLSVLSACSHGGLVEEGLSFFENMVQDHGV--EPGLEHY----SCMV 597

Query: 396 SSYSKCGNVDLAYIVFEEM 414
              S+ G ++ A  + E+M
Sbjct: 598 DMLSRAGKLNSAMNLIEKM 616



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/358 (27%), Positives = 177/358 (49%), Gaps = 6/358 (1%)

Query: 113 PYLVSCNAIVAGFINNKLFQ--QAVLLFNFFRGSGLVPNAVTML-TVIRGCVALGSRALC 169
           P L + N  +    N K +   +A   ++  + +G      T++ ++++ C +L  R   
Sbjct: 10  PKLPNWNLGIKDSTNRKWWDSWEACSRYHQMKKAGAQLTDPTLVHSILKACSSLPVRH-G 68

Query: 170 ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDF 229
           + IH   +K G     S  NSVLD Y     LD+A+ +F  M  +D +SW  M+   +  
Sbjct: 69  KSIHASLLKQGFDSLTSTGNSVLDFYMKTGALDSALFVFDSMRSRDSVSWNIMIHGHLSR 128

Query: 230 EYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLS 289
             +   L  FR+ R      +   L+  I     LG ++ G ++H  ++  G      + 
Sbjct: 129 GASDKGLWWFRQARVIAFEPNVSTLVLAIHACRSLGAMEEGLKMHGYIIRSGFLDIPSVQ 188

Query: 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD 349
           NS+++MY+   D++ +  +F+++ E+ ++SW+ +I GYVQ G A+ AL  F++M    + 
Sbjct: 189 NSLLSMYAD-NDMERAEELFDEMCERDVISWSVMIGGYVQTGEAKMALQLFLEMTSNASI 247

Query: 350 SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYI 409
            +D IT+VS+L A      + +   +HG+    G      V N +I  YSKC + + A+ 
Sbjct: 248 ELDGITMVSVLKACANTGDISMGRSVHGVVICRGLDYDLFVGNSIIDMYSKCDDHESAFK 307

Query: 410 VFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
            F EM   R+ VSWN+II G         AL+L++ M + G   D  T +++L +C +
Sbjct: 308 AFNEMP-CRNTVSWNSIISGLVRTEKHSEALSLFYSMGKAGFRADEVTLVNLLQSCKY 364



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 95/411 (23%), Positives = 187/411 (45%), Gaps = 30/411 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + ++  Y K    + A   F+E+P +N VSW+ +I G      H +++  F  M 
Sbjct: 285 DLFVGNSIIDMYSKCDDHESAFKAFNEMPCRNTVSWNSIISGLVRTEKHSEALSLFYSMG 344

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
            +G   +  T+V +L +     +    + IH +++++G E +                  
Sbjct: 345 KAGFRADEVTLVNLLQSCKYFVDPFQCKFIHSIVIRWGYELNEFVINSLIDAYSKCDLIE 404

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               LF+ LK    VS +A++AGF +     +A+ LF     +   PN VT+L+++    
Sbjct: 405 LAWKLFDRLKTKDTVSWSAMIAGFNHCGKPDEAIALFQEMNQAQEKPNGVTILSLLEAFS 464

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
                   +  HG+ I+ GL  +V+V  ++LDMY+   ++  + + F ++  K+++SW  
Sbjct: 465 VSADLKRSKWAHGIAIRRGLAAEVAVGTAILDMYAKCGEIGLSRKAFDQIPEKNIVSWGA 524

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG- 280
           M+        A DAL +  EM+   +  + V  L+++S  +  G ++ G      +V   
Sbjct: 525 MIAACGMNGLARDALALLSEMKLHGLKPNVVTTLSVLSACSHGGLVEEGLSFFENMVQDH 584

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVS---WTAIISGYVQNGCAR-EA 336
           G++  L   + ++ M S+ G L+S+ ++  ++ E+       W A++S    +G +R  A
Sbjct: 585 GVEPGLEHYSCMVDMLSRAGKLNSAMNLIEKMPERMRDGAGLWGALLSACRSSGNSRLGA 644

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASG---ELAALEICLQLHGIAFEAGF 384
              F  +  E   S       S+  ASG   + A +   ++  G+   AG+
Sbjct: 645 GAAFRVLELEPQSSAGYFLASSMYAASGLWADAARMRWLVKARGVRVVAGY 695



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/206 (33%), Positives = 111/206 (53%), Gaps = 8/206 (3%)

Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISG 326
           ++ GK +HA ++  G  S     NS++  Y K G LDS+  VF+ +  +  VSW  +I G
Sbjct: 65  VRHGKSIHASLLKQGFDSLTSTGNSVLDFYMKTGALDSALFVFDSMRSRDSVSWNIMIHG 124

Query: 327 YVQNGCAREALNQFIKMRQEKTDSVDS--ITLVSILTASGELAALEICLQLHGIAFEAGF 384
           ++  G + + L  F   RQ +  + +    TLV  + A   L A+E  L++HG    +GF
Sbjct: 125 HLSRGASDKGLWWF---RQARVIAFEPNVSTLVLAIHACRSLGAMEEGLKMHGYIIRSGF 181

Query: 385 PRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH 444
               SVQN L+S Y+   +++ A  +F+EM   RDV+SW+ +I GY   G  + AL L+ 
Sbjct: 182 LDIPSVQNSLLSMYAD-NDMERAEELFDEM-CERDVISWSVMIGGYVQTGEAKMALQLFL 239

Query: 445 KMTETGEVP-DSSTYLSILNACGHAG 469
           +MT    +  D  T +S+L AC + G
Sbjct: 240 EMTSNASIELDGITMVSVLKACANTG 265


>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
           [Vitis vinifera]
 gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
          Length = 703

 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 190/623 (30%), Positives = 301/623 (48%), Gaps = 71/623 (11%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKS--MKAFSHMM 63
           Y ++ L++ Y K  +++EA+ +F+ I  K+VVSW+ +I+GYS +G    S  M+ F  M 
Sbjct: 41  YIANSLVNLYAKCQRLREAKFVFERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMR 100

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPYL------ 115
                PN+ T  GV  AA+ L +    R  H + +K     D+F G  L N Y       
Sbjct: 101 AENTAPNAHTFAGVFTAASTLVDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTP 160

Query: 116 --------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                         VS   +++G+ + KL  +A+ LF   R      N     +V     
Sbjct: 161 EARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMRREEEGENEFVFTSV----- 215

Query: 162 ALGSRALCEL------IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKD 215
            L +  L EL      IH + +K GL+  VSV N+++ MY+    LD A+Q F     K+
Sbjct: 216 -LSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKN 274

Query: 216 VISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
            I+W+ M+  +     +  ALK+F  M  S I       + +I+  + LG    GKQ+H 
Sbjct: 275 SITWSAMITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEGKQVHD 334

Query: 276 QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
            ++  G +S++ +  +++ MY+KC  +  +R  F+ + E  +V WT++I GYVQNG   +
Sbjct: 335 YLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENED 394

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLI 395
           AL+ + +M  E     + +T+ S+L A   LAALE   Q+H    + GF     + + L 
Sbjct: 395 ALSLYGRMEMEGILP-NELTMASVLKACSSLAALEQGKQIHARTVKYGFGLEVPIGSALS 453

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
           + Y+KCG +    +VF  M   RDV+SWN +I G   NG G+ AL L+ +M   G  PD 
Sbjct: 454 TMYAKCGCLKDGTLVFRRMP-ARDVISWNAMISGLSQNGCGKEALELFEEMQLEGTKPDY 512

Query: 456 STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAG 515
            T+++IL+AC H GL   G   F  M +E  + P  EHY C+VD+L+RAG L +A     
Sbjct: 513 VTFVNILSACSHMGLVERGWGYFRMMFDEFGMDPRVEHYACMVDILSRAGKLKEAIEFTE 572

Query: 516 KLLEGMGPNIWRALLSGCVLH---------------------------------VGRFQD 542
                 G  +WR +L  C  +                                 +GR++D
Sbjct: 573 SATIDHGMCLWRIILGACRNYRNYELGAYAGEKLMELGSQESSAYVLLSSIYSALGRWED 632

Query: 543 AEALRSGSQKKGIIKIPGISFLN 565
            E +R   + +G+ K PG S++ 
Sbjct: 633 VERVRRMMKLRGVSKEPGCSWIE 655



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 125/450 (27%), Positives = 214/450 (47%), Gaps = 26/450 (5%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C D +  S L++ Y K+G   EA  +FD +PE+N VSW+ +I GY+      +++  F  
Sbjct: 140 CRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRL 199

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES----------------- 104
           M       N F    VL A    + +   + IH + VK GL S                 
Sbjct: 200 MRREEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGS 259

Query: 105 -----DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                  FE   +   ++ +A++ G+  +    +A+ LF+    SG+ P+  T + VI  
Sbjct: 260 LDDALQTFETSSDKNSITWSAMITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINA 319

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C  LG+    + +H   +KLG    + V  +++DMY+    +  A + F  ++  D++ W
Sbjct: 320 CSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLW 379

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           T M+G +V      DAL ++  M    I+ + + + +++   + L  L++GKQ+HA+ V 
Sbjct: 380 TSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIHARTVK 439

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G   E+ + +++  MY+KCG L     VF ++  + ++SW A+ISG  QNGC +EAL  
Sbjct: 440 YGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQNGCGKEALEL 499

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAF-EAGF-PRYRSVQNCLISS 397
           F +M+ E T   D +T V+IL+A   +  +E       + F E G  PR      C++  
Sbjct: 500 FEEMQLEGTKP-DYVTFVNILSACSHMGLVERGWGYFRMMFDEFGMDPRVEHYA-CMVDI 557

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
            S+ G +  A    E       +  W  I+
Sbjct: 558 LSRAGKLKEAIEFTESATIDHGMCLWRIIL 587



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 107/406 (26%), Positives = 197/406 (48%), Gaps = 25/406 (6%)

Query: 167 ALCELIHGLTIKLGLILD----------VSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
           AL +  H  +++ G  L           V + NS++++Y+    L  A  +F  ++ KDV
Sbjct: 12  ALLQYTHNRSLQKGKALHAQIIKSSSSCVYIANSLVNLYAKCQRLREAKFVFERIQNKDV 71

Query: 217 ISWTRMMGLFVDFEYAGDA--LKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
           +SW  ++  +     +G +  +++F+ MR      +      + +  + L D   G+  H
Sbjct: 72  VSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLVDAAGGRLAH 131

Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
           A  +      ++ + +S++ MY K G    +R VF+ + E++ VSW  +ISGY     A 
Sbjct: 132 AVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAA 191

Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
           EAL  F  MR+E+ +  +     S+L+A      +    Q+H IA + G     SV N L
Sbjct: 192 EALGLFRLMRREE-EGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNAL 250

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           ++ Y+KCG++D A   FE     ++ ++W+ +I GY  +G  + AL L+  M  +G  P 
Sbjct: 251 VTMYAKCGSLDDALQTFETSSD-KNSITWSAMITGYAQSGDSDKALKLFSSMHLSGIRPS 309

Query: 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY--GCVVDLLARAGCLSDASG 512
             T++ ++NAC   G   +G  + + ++   K+    + Y    +VD+ A+   + DA  
Sbjct: 310 EFTFVGVINACSDLGAAWEGKQVHDYLL---KLGFESQIYVMTALVDMYAKCSSIVDARK 366

Query: 513 LAGKLLEGMGPNI--WRALLSGCVLHVGRFQDAEALRSGSQKKGII 556
               L E   P+I  W +++ G V + G  +DA +L    + +GI+
Sbjct: 367 GFDYLQE---PDIVLWTSMIGGYVQN-GENEDALSLYGRMEMEGIL 408


>gi|449436034|ref|XP_004135799.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 706

 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 167/555 (30%), Positives = 291/555 (52%), Gaps = 23/555 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  +KL++ Y   G ++ A  +FDEIP+   V  + +++GY  N  +   ++    M 
Sbjct: 88  DQFLVAKLVAAYSSLGCLENARKVFDEIPQPKTVLCNAMVNGYLQNERYNDCIELLKMMS 147

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG-------------- 109
              L  +S+T    L A   L + E+   + GL V  GL    F G              
Sbjct: 148 RCHLEFDSYTCNFALKACMFLLDYEMGMEVIGLAVCKGLAGGRFLGSSILNFLVKTGDIM 207

Query: 110 --------LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                   +    +V  N ++ GF+   LF++   LF     + + P+AVTM+++I+ C 
Sbjct: 208 CAQFFFHQMVEKDVVCWNVMIGGFMQEGLFREGYNLFLDMLYNKIEPSAVTMISLIQSCG 267

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            + +    + +HG  +  G+  D  V  +++DMY    D+++A  IF  M  ++++SW  
Sbjct: 268 EMRNLTFGKCMHGFVLGFGMSRDTRVLTTLIDMYCKSGDVESARWIFENMPSRNLVSWNV 327

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+  +V      + L++F+++    +  D+  +++LI + +   DL  GK LH  +   G
Sbjct: 328 MISGYVQNGLLVETLRLFQKLIMDDVGFDSGTVVSLIQLCSRTADLDGGKILHGFIYRRG 387

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           L   L L  +I+ +Y+KCG L  + SVF ++  K+++SWTA++ G  QNG AR+AL  F 
Sbjct: 388 LDLNLVLPTAIVDLYAKCGSLAYASSVFERMKNKNVISWTAMLVGLAQNGHARDALKLFD 447

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +M+ E+  + +++TLVS++     L  L     +H       F     V   LI  Y+KC
Sbjct: 448 QMQNERV-TFNALTLVSLVYCCTLLGLLREGRSVHATLTRFHFASEVVVMTALIDMYAKC 506

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
             ++ A +VF+     +DV+ +N++I GYG++G G  AL +YH+M   G  P+ ST++S+
Sbjct: 507 SKINSAEMVFKYGLTPKDVILYNSMISGYGMHGLGHKALCVYHRMNREGLQPNESTFVSL 566

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L+AC H+GL  +G+ +F  M++++   P+ + Y C+VDLL+RAG L  A  L  ++    
Sbjct: 567 LSACSHSGLVEEGIALFQNMVKDHNTTPTDKLYACIVDLLSRAGRLRQAEELINQMPFTP 626

Query: 522 GPNIWRALLSGCVLH 536
              I   LL+GC+LH
Sbjct: 627 TSGILETLLNGCLLH 641


>gi|50080253|gb|AAT69588.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|222632650|gb|EEE64782.1| hypothetical protein OsJ_19638 [Oryza sativa Japonica Group]
          Length = 870

 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 162/548 (29%), Positives = 284/548 (51%), Gaps = 25/548 (4%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           +LS   + G+I  A  +F ++PE++V SW++++ GY   GF E+++  +  M+ +G+ P+
Sbjct: 137 MLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMRPD 196

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------------FE 108
            +T   VL    G+ +  + R +H  +++FG   ++                      F+
Sbjct: 197 VYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFD 256

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
           G+     +S NA++AG   N   +  + LF     + + PN +T+ +V      L     
Sbjct: 257 GMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASGMLSEVGF 316

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
            + +HG  +K G  +DV+  NS++ MY+ L  +  A +IF  ME KD +SWT M+  +  
Sbjct: 317 AKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEK 376

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
             +   AL+++  M    +  D V + + ++  A LG L  G +LH      G    + +
Sbjct: 377 NGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVV 436

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
           +N+++ MY+K   +D +  VF  + EK +VSW+++I+G+  N  + EAL  F  M     
Sbjct: 437 ANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYMLGHVK 496

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
              +S+T ++ L+A     AL    ++H      G      V N L+  Y KCG    A+
Sbjct: 497 P--NSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAW 554

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
             F  +   +DVVSWN ++ G+  +G G+ AL+L+++M E GE PD  T++++L AC  A
Sbjct: 555 AQF-SVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSRA 613

Query: 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRA 528
           G+   G  +F+ M E+  + P+ +HY C+VDLL+R G L++A  L  ++       +W A
Sbjct: 614 GMVIQGWELFHMMTEKFSIVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAVWGA 673

Query: 529 LLSGCVLH 536
           LL+GC +H
Sbjct: 674 LLNGCRIH 681



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 122/454 (26%), Positives = 217/454 (47%), Gaps = 33/454 (7%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L++ Y K G I  A  +FD +   + +SW+ +I G+  N   E  ++ F  M+ + + PN
Sbjct: 238 LVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPN 297

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFE 108
             T+  V VA+  L  +  A+ +HG  VK G   D                      +F 
Sbjct: 298 LMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFS 357

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            ++    +S  A+++G+  N    +A+ ++       + P+ VT+ + +  C  LG   +
Sbjct: 358 RMETKDAMSWTAMISGYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLDV 417

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
              +H L    G I  V V N++L+MY+    +D AI++F+ M  KDV+SW+ M+  F  
Sbjct: 418 GIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCF 477

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
              + +AL  FR M    +  ++V  +  +S  A  G L+ GK++HA V+  G+ SE  +
Sbjct: 478 NHRSFEALYYFRYML-GHVKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGYV 536

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
            N+++ +Y KCG    + + F+  +EK +VSW  ++SG+V +G    AL+ F +M  E  
Sbjct: 537 PNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQM-VEMG 595

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN-----CLISSYSKCGN 403
           +  D +T V++L A      +    +L  +  E    ++  V N     C++   S+ G 
Sbjct: 596 EHPDEVTFVALLCACSRAGMVIQGWELFHMMTE----KFSIVPNLKHYACMVDLLSRVGK 651

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGE 437
           +  AY +   M    D   W  ++ G  ++ H E
Sbjct: 652 LTEAYNLINRMPIKPDAAVWGALLNGCRIHRHVE 685



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 139/273 (50%), Gaps = 2/273 (0%)

Query: 185 VSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRK 244
           + + N++L M     ++  A ++F +M  +DV SW  M+G +    +  +AL ++  M  
Sbjct: 131 LRLGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLW 190

Query: 245 SRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDS 304
           + +  D      ++     + D + G+++HA V+  G   E+ + N+++ MY+KCGD+ +
Sbjct: 191 AGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVA 250

Query: 305 SRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASG 364
           +R VF+ +     +SW A+I+G+ +N      L  F+ M + +    + +T+ S+  ASG
Sbjct: 251 ARKVFDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQP-NLMTITSVTVASG 309

Query: 365 ELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWN 424
            L+ +    ++HG A + GF    +  N LI  Y+  G +  A  +F  M   +D +SW 
Sbjct: 310 MLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRME-TKDAMSWT 368

Query: 425 TIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
            +I GY  NG  + AL +Y  M      PD  T
Sbjct: 369 AMISGYEKNGFPDKALEVYALMELHNVSPDDVT 401



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 91/390 (23%), Positives = 172/390 (44%), Gaps = 26/390 (6%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           ID    + L+  Y   G++ +A  +F  +  K+ +SW+ +I GY  NGF +K+++ ++ M
Sbjct: 331 IDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALM 390

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL-------------------- 102
            L  + P+  T+   L A A L  L++   +H L    G                     
Sbjct: 391 ELHNVSPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHI 450

Query: 103 --ESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
               ++F+ +    +VS ++++AGF  N    +A+  F +  G  + PN+VT +  +  C
Sbjct: 451 DKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYMLGH-VKPNSVTFIAALSAC 509

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
            A G+    + IH   ++ G+  +  V N++LD+Y        A   F     KDV+SW 
Sbjct: 510 AATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWN 569

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQL-HAQVVL 279
            M+  FV       AL +F +M +     D V  + L+   +  G + +G +L H     
Sbjct: 570 IMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEK 629

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVS-WTAIISG-YVQNGCAREAL 337
             +   L+    ++ + S+ G L  + ++ N++  K   + W A+++G  +        L
Sbjct: 630 FSIVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAVWGALLNGCRIHRHVELGEL 689

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELA 367
              + +  E  D    + L  + T +G+ A
Sbjct: 690 AAKVILELEPNDVAYHVLLCDLYTDAGKWA 719



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 89/181 (49%), Gaps = 2/181 (1%)

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           LRL N++++M  + G++  +  VF ++ E+ + SW  ++ GY + G   EAL+ + +M  
Sbjct: 131 LRLGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLW 190

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
                 D  T   +L   G +    +  ++H      GF     V N L++ Y+KCG++ 
Sbjct: 191 AGMRP-DVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIV 249

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            A  VF+ M  + D +SWN +I G+  N   E  L L+  M E    P+  T  S+  A 
Sbjct: 250 AARKVFDGMA-VTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVAS 308

Query: 466 G 466
           G
Sbjct: 309 G 309


>gi|356532944|ref|XP_003535029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 813

 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 177/618 (28%), Positives = 303/618 (49%), Gaps = 57/618 (9%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  S L+  Y  +G I++A  +FDE+P ++ + W++++ GY  +G  + ++  F  M
Sbjct: 145 VDLFAGSALIKLYADNGYIRDARRVFDELPLRDTILWNVMLRGYVKSGDFDNAIGTFCEM 204

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
             S  + NS T   +L   A   N      +HGL++  G E D                 
Sbjct: 205 RTSYSMVNSVTYTCILSICATRGNFCAGTQLHGLVIGSGFEFDPQVANTLVAMYSKCGNL 264

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                LF  +     V+ N ++AG++ N    +A  LFN    +G+ P++VT  + +   
Sbjct: 265 LYARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSI 324

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
           +  GS   C+ +H   ++  +  DV + ++++D+Y    D++ A +IF++    DV   T
Sbjct: 325 LESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDVYFKGGDVEMARKIFQQNILVDVAVCT 384

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+  +V      DA+  FR + +  ++ +++ + +++   A +  LK GK+LH  ++  
Sbjct: 385 AMISGYVLHGLNIDAINTFRWLIQEGMVTNSLTMASVLPACAAVAALKPGKELHCHILKK 444

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
            L++ + + ++I  MY+KCG LD +   F +++++  V W ++IS + QNG    A++ F
Sbjct: 445 RLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSDRDSVCWNSMISSFSQNGKPEIAIDLF 504

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            +M        DS++L S L+A+  L AL    ++HG      F     V + LI  YSK
Sbjct: 505 RQMGMSGA-KFDSVSLSSALSAAANLPALYYGKEMHGYVIRNAFSSDTFVASTLIDMYSK 563

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CGN+ LA+ VF  M   ++ VSWN+II  YG +G     L LYH+M   G  PD  T+L 
Sbjct: 564 CGNLALAWCVFNLMDG-KNEVSWNSIIAAYGNHGCPRECLDLYHEMLRAGIHPDHVTFLV 622

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           I++ACGHAGL ++G+  F+ M  E  +    EHY C+VDL  RAG + +A      +   
Sbjct: 623 IISACGHAGLVDEGIHYFHCMTREYGIGARMEHYACMVDLYGRAGRVHEAFDTIKSMPFT 682

Query: 521 MGPNIWRALLSGCVLH---------------------------------VGRFQDAEALR 547
               +W  LL  C LH                                  G +     +R
Sbjct: 683 PDAGVWGTLLGACRLHGNVELAKLASRHLLELDPKNSGYYVLLSNVHADAGEWASVLKVR 742

Query: 548 SGSQKKGIIKIPGISFLN 565
           S  ++KG+ KIPG S+++
Sbjct: 743 SLMKEKGVQKIPGYSWID 760



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 130/470 (27%), Positives = 228/470 (48%), Gaps = 24/470 (5%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           SS++L  Y   G+ ++A NLF E+  +  + W+ +I G  + G+ + ++  +  M+ S +
Sbjct: 49  SSRVLGLYVLCGRFRDAGNLFFELELRYALPWNWMIRGLYMLGWFDFALLFYFKMLGSNV 108

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG-------LKNPYL----- 115
            P+ +T   V+ A  GL N+ L   +H      G   DLF G         N Y+     
Sbjct: 109 SPDKYTFPYVIKACGGLNNVPLCMVVHDTARSLGFHVDLFAGSALIKLYADNGYIRDARR 168

Query: 116 ----------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
                     +  N ++ G++ +  F  A+  F   R S  + N+VT   ++  C   G+
Sbjct: 169 VFDELPLRDTILWNVMLRGYVKSGDFDNAIGTFCEMRTSYSMVNSVTYTCILSICATRGN 228

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
                 +HGL I  G   D  V N+++ MYS   +L  A ++F  M   D ++W  ++  
Sbjct: 229 FCAGTQLHGLVIGSGFEFDPQVANTLVAMYSKCGNLLYARKLFNTMPQTDTVTWNGLIAG 288

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +V   +  +A  +F  M  + +  D+V   + +      G L+  K++H+ +V   +  +
Sbjct: 289 YVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFD 348

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           + L +++I +Y K GD++ +R +F Q     +   TA+ISGYV +G   +A+N F  + Q
Sbjct: 349 VYLKSALIDVYFKGGDVEMARKIFQQNILVDVAVCTAMISGYVLHGLNIDAINTFRWLIQ 408

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
           E     +S+T+ S+L A   +AAL+   +LH    +       +V + +   Y+KCG +D
Sbjct: 409 EGM-VTNSLTMASVLPACAAVAALKPGKELHCHILKKRLENIVNVGSAITDMYAKCGRLD 467

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
           LAY  F  M   RD V WN++I  +  NG  E A+ L+ +M  +G   DS
Sbjct: 468 LAYEFFRRMS-DRDSVCWNSMISSFSQNGKPEIAIDLFRQMGMSGAKFDS 516



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 108/368 (29%), Positives = 186/368 (50%), Gaps = 2/368 (0%)

Query: 99  KFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
           +F    +LF  L+  Y +  N ++ G      F  A+L +    GS + P+  T   VI+
Sbjct: 61  RFRDAGNLFFELELRYALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIK 120

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C  L +  LC ++H     LG  +D+   ++++ +Y+    +  A ++F E+  +D I 
Sbjct: 121 ACGGLNNVPLCMVVHDTARSLGFHVDLFAGSALIKLYADNGYIRDARRVFDELPLRDTIL 180

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           W  M+  +V      +A+  F EMR S  + ++V    ++S+ A  G+   G QLH  V+
Sbjct: 181 WNVMLRGYVKSGDFDNAIGTFCEMRTSYSMVNSVTYTCILSICATRGNFCAGTQLHGLVI 240

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
             G + + +++N+++AMYSKCG+L  +R +FN + +   V+W  +I+GYVQNG   EA  
Sbjct: 241 GSGFEFDPQVANTLVAMYSKCGNLLYARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAP 300

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
            F  M        DS+T  S L +  E  +L  C ++H        P    +++ LI  Y
Sbjct: 301 LFNAMISAGVKP-DSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDVY 359

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
            K G+V++A  +F++   L DV     +I GY ++G    A+  +  + + G V +S T 
Sbjct: 360 FKGGDVEMARKIFQQ-NILVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVTNSLTM 418

Query: 459 LSILNACG 466
            S+L AC 
Sbjct: 419 ASVLPACA 426



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 104/216 (48%), Gaps = 7/216 (3%)

Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISG 326
           +++ +Q+H QV++GG+      S+ ++ +Y  CG    + ++F ++  +  + W  +I G
Sbjct: 27  VQQARQVHTQVIVGGMGDVCAPSSRVLGLYVLCGRFRDAGNLFFELELRYALPWNWMIRG 86

Query: 327 YVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPR 386
               G    AL  + KM      S D  T   ++ A G L  + +C+ +H  A   GF  
Sbjct: 87  LYMLGWFDFALLFYFKMLGSNV-SPDKYTFPYVIKACGGLNNVPLCMVVHDTARSLGFHV 145

Query: 387 YRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM 446
                + LI  Y+  G +  A  VF+E+  LRD + WN ++ GY  +G  + A+  + +M
Sbjct: 146 DLFAGSALIKLYADNGYIRDARRVFDELP-LRDTILWNVMLRGYVKSGDFDNAIGTFCEM 204

Query: 447 TETGEVPDSSTYLSILNACGH-----AGLTNDGLVI 477
             +  + +S TY  IL+ C       AG    GLVI
Sbjct: 205 RTSYSMVNSVTYTCILSICATRGNFCAGTQLHGLVI 240


>gi|297604953|ref|NP_001056393.2| Os05g0574800 [Oryza sativa Japonica Group]
 gi|255676596|dbj|BAF18307.2| Os05g0574800 [Oryza sativa Japonica Group]
          Length = 857

 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 162/548 (29%), Positives = 284/548 (51%), Gaps = 25/548 (4%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           +LS   + G+I  A  +F ++PE++V SW++++ GY   GF E+++  +  M+ +G+ P+
Sbjct: 137 MLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMRPD 196

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------------FE 108
            +T   VL    G+ +  + R +H  +++FG   ++                      F+
Sbjct: 197 VYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFD 256

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
           G+     +S NA++AG   N   +  + LF     + + PN +T+ +V      L     
Sbjct: 257 GMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASGMLSEVGF 316

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
            + +HG  +K G  +DV+  NS++ MY+ L  +  A +IF  ME KD +SWT M+  +  
Sbjct: 317 AKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEK 376

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
             +   AL+++  M    +  D V + + ++  A LG L  G +LH      G    + +
Sbjct: 377 NGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVV 436

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
           +N+++ MY+K   +D +  VF  + EK +VSW+++I+G+  N  + EAL  F  M     
Sbjct: 437 ANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYMLGHVK 496

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
              +S+T ++ L+A     AL    ++H      G      V N L+  Y KCG    A+
Sbjct: 497 P--NSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAW 554

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
             F  +   +DVVSWN ++ G+  +G G+ AL+L+++M E GE PD  T++++L AC  A
Sbjct: 555 AQF-SVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSRA 613

Query: 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRA 528
           G+   G  +F+ M E+  + P+ +HY C+VDLL+R G L++A  L  ++       +W A
Sbjct: 614 GMVIQGWELFHMMTEKFSIVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAVWGA 673

Query: 529 LLSGCVLH 536
           LL+GC +H
Sbjct: 674 LLNGCRIH 681



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 122/454 (26%), Positives = 217/454 (47%), Gaps = 33/454 (7%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L++ Y K G I  A  +FD +   + +SW+ +I G+  N   E  ++ F  M+ + + PN
Sbjct: 238 LVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPN 297

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFE 108
             T+  V VA+  L  +  A+ +HG  VK G   D                      +F 
Sbjct: 298 LMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFS 357

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            ++    +S  A+++G+  N    +A+ ++       + P+ VT+ + +  C  LG   +
Sbjct: 358 RMETKDAMSWTAMISGYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLDV 417

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
              +H L    G I  V V N++L+MY+    +D AI++F+ M  KDV+SW+ M+  F  
Sbjct: 418 GIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCF 477

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
              + +AL  FR M    +  ++V  +  +S  A  G L+ GK++HA V+  G+ SE  +
Sbjct: 478 NHRSFEALYYFRYML-GHVKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGYV 536

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
            N+++ +Y KCG    + + F+  +EK +VSW  ++SG+V +G    AL+ F +M  E  
Sbjct: 537 PNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQM-VEMG 595

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN-----CLISSYSKCGN 403
           +  D +T V++L A      +    +L  +  E    ++  V N     C++   S+ G 
Sbjct: 596 EHPDEVTFVALLCACSRAGMVIQGWELFHMMTE----KFSIVPNLKHYACMVDLLSRVGK 651

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGE 437
           +  AY +   M    D   W  ++ G  ++ H E
Sbjct: 652 LTEAYNLINRMPIKPDAAVWGALLNGCRIHRHVE 685



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 149/308 (48%), Gaps = 7/308 (2%)

Query: 150 AVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFR 209
           A+  L   R  V  G RA C          GL L     N++L M     ++  A ++F 
Sbjct: 101 ALFRLCEWRRAVDAGMRA-CARADAEHPSFGLRL----GNAMLSMLVRFGEIWHAWRVFA 155

Query: 210 EMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKR 269
           +M  +DV SW  M+G +    +  +AL ++  M  + +  D      ++     + D + 
Sbjct: 156 KMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVLRTCGGIPDWRM 215

Query: 270 GKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQ 329
           G+++HA V+  G   E+ + N+++ MY+KCGD+ ++R VF+ +     +SW A+I+G+ +
Sbjct: 216 GREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGHFE 275

Query: 330 NGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS 389
           N      L  F+ M + +    + +T+ S+  ASG L+ +    ++HG A + GF    +
Sbjct: 276 NHECEAGLELFLTMLENEVQP-NLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDVA 334

Query: 390 VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
             N LI  Y+  G +  A  +F  M   +D +SW  +I GY  NG  + AL +Y  M   
Sbjct: 335 FCNSLIQMYTSLGRMGDAGKIFSRME-TKDAMSWTAMISGYEKNGFPDKALEVYALMELH 393

Query: 450 GEVPDSST 457
              PD  T
Sbjct: 394 NVSPDDVT 401



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 91/390 (23%), Positives = 172/390 (44%), Gaps = 26/390 (6%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           ID    + L+  Y   G++ +A  +F  +  K+ +SW+ +I GY  NGF +K+++ ++ M
Sbjct: 331 IDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALM 390

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL-------------------- 102
            L  + P+  T+   L A A L  L++   +H L    G                     
Sbjct: 391 ELHNVSPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHI 450

Query: 103 --ESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
               ++F+ +    +VS ++++AGF  N    +A+  F +  G  + PN+VT +  +  C
Sbjct: 451 DKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYMLGH-VKPNSVTFIAALSAC 509

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
            A G+    + IH   ++ G+  +  V N++LD+Y        A   F     KDV+SW 
Sbjct: 510 AATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWN 569

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQL-HAQVVL 279
            M+  FV       AL +F +M +     D V  + L+   +  G + +G +L H     
Sbjct: 570 IMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEK 629

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVS-WTAIISG-YVQNGCAREAL 337
             +   L+    ++ + S+ G L  + ++ N++  K   + W A+++G  +        L
Sbjct: 630 FSIVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAVWGALLNGCRIHRHVELGEL 689

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELA 367
              + +  E  D    + L  + T +G+ A
Sbjct: 690 AAKVILELEPNDVAYHVLLCDLYTDAGKWA 719



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 89/181 (49%), Gaps = 2/181 (1%)

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           LRL N++++M  + G++  +  VF ++ E+ + SW  ++ GY + G   EAL+ + +M  
Sbjct: 131 LRLGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLW 190

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
                 D  T   +L   G +    +  ++H      GF     V N L++ Y+KCG++ 
Sbjct: 191 AGMRP-DVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIV 249

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            A  VF+ M  + D +SWN +I G+  N   E  L L+  M E    P+  T  S+  A 
Sbjct: 250 AARKVFDGMA-VTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVAS 308

Query: 466 G 466
           G
Sbjct: 309 G 309


>gi|238478502|ref|NP_173097.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191338|gb|AEE29459.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 937

 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 164/543 (30%), Positives = 282/543 (51%), Gaps = 29/543 (5%)

Query: 19  GKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVL 78
           G +  A  +FD++ E++ +SW+ +   Y+ NG  E+S + FS M       NS T+  +L
Sbjct: 209 GNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLL 268

Query: 79  VAAAGLQNLELARSIHGLMVKFGLESDL----------------------FEGLKNPYLV 116
                + + +  R IHGL+VK G +S +                      F+ +    L+
Sbjct: 269 SVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLI 328

Query: 117 SCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLT 176
           S N+++A F+N+     A+ L      SG   N VT  + +  C          ++HGL 
Sbjct: 329 SWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLV 388

Query: 177 IKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDAL 236
           +  GL  +  + N+++ MY  + ++  + ++  +M  +DV++W  ++G + + E    AL
Sbjct: 389 VVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKAL 448

Query: 237 KIFREMRKSRIICDTVALLNLISVNAILGDL-KRGKQLHAQVVLGGLQSELRLSNSIIAM 295
             F+ MR   +  + + +++++S   + GDL +RGK LHA +V  G +S+  + NS+I M
Sbjct: 449 AAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITM 508

Query: 296 YSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSIT 355
           Y+KCGDL SS+ +FN +  +++++W A+++    +G   E L    KMR     S+D  +
Sbjct: 509 YAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGV-SLDQFS 567

Query: 356 LVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMG 415
               L+A+ +LA LE   QLHG+A + GF     + N     YSKCG +     +     
Sbjct: 568 FSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPP-S 626

Query: 416 FLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGL 475
             R + SWN +I   G +G+ E   A +H+M E G  P   T++S+L AC H GL + GL
Sbjct: 627 VNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGL 686

Query: 476 VIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN--IWRALLSGC 533
             ++ +  +  ++P+ EH  CV+DLL R+G L++A     K+   M PN  +WR+LL+ C
Sbjct: 687 AYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKM--PMKPNDLVWRSLLASC 744

Query: 534 VLH 536
            +H
Sbjct: 745 KIH 747



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 158/561 (28%), Positives = 272/561 (48%), Gaps = 45/561 (8%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y S+ +L  Y   G +  +  +F+E+P++NVVSW+ ++ GYS  G  E+ +  +  M 
Sbjct: 93  DVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMR 152

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------- 106
             G+  N  +M  V+ +   L++  L R I G +VK GLES L                 
Sbjct: 153 GEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVD 212

Query: 107 -----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                F+ +     +S N+I A +  N   +++  +F+  R      N+ T+ T++    
Sbjct: 213 YANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLG 272

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            +  +     IHGL +K+G    V V N++L MY+       A  +F++M  KD+ISW  
Sbjct: 273 HVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNS 332

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           +M  FV+   + DAL +   M  S    + V   + ++        ++G+ LH  VV+ G
Sbjct: 333 LMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSG 392

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           L     + N++++MY K G++  SR V  Q+  + +V+W A+I GY ++    +AL  F 
Sbjct: 393 LFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQ 452

Query: 342 KMRQEKTDSVDSITLVSILTA---SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
            MR E   S + IT+VS+L+A    G+L  LE    LH     AGF     V+N LI+ Y
Sbjct: 453 TMRVEGVSS-NYITVVSVLSACLLPGDL--LERGKPLHAYIVSAGFESDEHVKNSLITMY 509

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
           +KCG++  +  +F  +   R++++WN ++     +GHGE  L L  KM   G   D  ++
Sbjct: 510 AKCGDLSSSQDLFNGLDN-RNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSF 568

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEH----YGCVVDLLARAGCLSDASGLA 514
              L+A     +  +G     Q +    VK   EH    +    D+ ++ G +       
Sbjct: 569 SEGLSAAAKLAVLEEG-----QQLHGLAVKLGFEHDSFIFNAAADMYSKCGEI------- 616

Query: 515 GKLLEGMGPNIWRALLSGCVL 535
           G++++ + P++ R+L S  +L
Sbjct: 617 GEVVKMLPPSVNRSLPSWNIL 637



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 150/548 (27%), Positives = 255/548 (46%), Gaps = 32/548 (5%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTM 74
           Y K G++K A +LFD +P +N VSW+ ++ G    G + + M+ F  M   G+ P+SF +
Sbjct: 2   YTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSF-V 60

Query: 75  VGVLVAAAGLQN--LELARSIHGLMVKFGLESDL----------------------FEGL 110
           +  LV A G           +HG + K GL SD+                      FE +
Sbjct: 61  IASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEM 120

Query: 111 KNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCE 170
            +  +VS  +++ G+ +    ++ + ++   RG G+  N  +M  VI  C  L   +L  
Sbjct: 121 PDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGR 180

Query: 171 LIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFE 230
            I G  +K GL   ++V NS++ M   + ++D A  IF +M  +D ISW  +   +    
Sbjct: 181 QIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNG 240

Query: 231 YAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSN 290
           +  ++ +IF  MR+     ++  +  L+SV   +   K G+ +H  VV  G  S + + N
Sbjct: 241 HIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCN 300

Query: 291 SIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDS 350
           +++ MY+  G    +  VF Q+  K L+SW ++++ +V +G + +AL     M      S
Sbjct: 301 TLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSM-ISSGKS 359

Query: 351 VDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIV 410
           V+ +T  S L A       E    LHG+   +G    + + N L+S Y K G +  +  V
Sbjct: 360 VNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRV 419

Query: 411 FEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAG- 469
             +M   RDVV+WN +I GY  +   + ALA +  M   G   +  T +S+L+AC   G 
Sbjct: 420 LLQMP-RRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGD 478

Query: 470 LTNDGLVIFNQMIEENKVKPSQEHY-GCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRA 528
           L   G  +   ++       S EH    ++ + A+ G LS +  L    L+      W A
Sbjct: 479 LLERGKPLHAYIVSAG--FESDEHVKNSLITMYAKCGDLSSSQDLFNG-LDNRNIITWNA 535

Query: 529 LLSGCVLH 536
           +L+    H
Sbjct: 536 MLAANAHH 543



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/276 (28%), Positives = 143/276 (51%), Gaps = 5/276 (1%)

Query: 194 MYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVA 253
           MY+    +  A  +F  M  ++ +SW  MM   V      + ++ FR+M    I   +  
Sbjct: 1   MYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFV 60

Query: 254 LLNLISVNAILGDLKR-GKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQI 312
           + +L++     G + R G Q+H  V   GL S++ +S +I+ +Y   G +  SR VF ++
Sbjct: 61  IASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEM 120

Query: 313 TEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD-SVDSITLVSILTASGELAALEI 371
            ++++VSWT+++ GY   G   E ++ +  MR E    + +S++LV  +++ G L    +
Sbjct: 121 PDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLV--ISSCGLLKDESL 178

Query: 372 CLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYG 431
             Q+ G   ++G     +V+N LIS     GNVD A  +F++M   RD +SWN+I   Y 
Sbjct: 179 GRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMS-ERDTISWNSIAAAYA 237

Query: 432 VNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
            NGH E +  ++  M    +  +S+T  ++L+  GH
Sbjct: 238 QNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGH 273



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 93/190 (48%), Gaps = 3/190 (1%)

Query: 295 MYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSI 354
           MY+K G +  +R +F+ +  ++ VSW  ++SG V+ G   E +  F KM         S 
Sbjct: 1   MYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKP-SSF 59

Query: 355 TLVSILTASGELAAL-EICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEE 413
            + S++TA G   ++    +Q+HG   ++G      V   ++  Y   G V  +  VFEE
Sbjct: 60  VIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEE 119

Query: 414 MGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTND 473
           M   R+VVSW +++ GY   G  E  + +Y  M   G   + ++   ++++CG     + 
Sbjct: 120 MPD-RNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESL 178

Query: 474 GLVIFNQMIE 483
           G  I  Q+++
Sbjct: 179 GRQIIGQVVK 188



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 145/348 (41%), Gaps = 63/348 (18%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L++ Y K G +  +++LF+ +  +N+++W+ ++   + +G  E+ +K  S M 
Sbjct: 498 DEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMR 557

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF---------------- 107
             G+  + F+    L AAA L  LE  + +HGL VK G E D F                
Sbjct: 558 SFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIG 617

Query: 108 EGLK------NPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
           E +K      N  L S N +++    +  F++    F+     G+ P  VT ++++  C 
Sbjct: 618 EVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACS 677

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
                      HG  +  GL        +  DM +    L+ AI+      C  VI    
Sbjct: 678 -----------HGGLVDKGL--------AYYDMIARDFGLEPAIE-----HCICVIDLLG 713

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
             G   + E           + K  +  + +   +L++   I G+L RG++  A   L  
Sbjct: 714 RSGRLAEAETF---------ISKMPMKPNDLVWRSLLASCKIHGNLDRGRK--AAENLSK 762

Query: 282 LQSE----LRLSNSIIAMYSKCGDLDSSRSV--FNQITEKSLVSWTAI 323
           L+ E      LS+++ A   +  D+++ R    F  I +K   SW  +
Sbjct: 763 LEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKL 810


>gi|413918945|gb|AFW58877.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 768

 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 170/555 (30%), Positives = 286/555 (51%), Gaps = 29/555 (5%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ L++ Y +      A  +FD + ++N VSW+ VI  ++ N     +M  FS M+  G 
Sbjct: 83  SNHLITMYGRCAAPDSARMVFDGMLDRNPVSWAAVIAAHAQNSRCADAMGLFSSMLRLGT 142

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVK----------------------FGLESD 105
            P+ F +   + A A L +L L R +H   +K                       G    
Sbjct: 143 APDEFALGSAVRACAELGDLGLGRQVHAQAIKSDNGGHLIVQNALVTMYSKSGSVGDGFA 202

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLV-PNAVTMLTVIRGC-VAL 163
           LFE +++  L S  +I+AG         A+ +F      G+  PN     +V R C V +
Sbjct: 203 LFERIRDKDLFSWGSIIAGLAQQGREMDALHIFREMIAEGMHHPNEFHFGSVFRACSVVI 262

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
            S    E IHGL +K  L  +     S+ DMY+    LD+A+++F  +E  D++SW  ++
Sbjct: 263 NSLEYGEQIHGLCVKYKLDRNSYAGCSLGDMYARCNKLDSAMKVFYRIESPDLVSWNSLI 322

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
             F       +A+ +F EMR S +  D + ++ L+        L++G+ +H+ +V  GL 
Sbjct: 323 NAFSADGLLSEAMVLFSEMRYSSLKPDGITVMALLCACVGCDALRQGRSIHSYLVKLGLG 382

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
            ++ + NS+I+MY++C D  S+  VF++  ++ +V+W +I++  VQ+    +    F ++
Sbjct: 383 GDVMVCNSLISMYTRCLDFPSAMDVFHETNDRDVVTWNSILTACVQHRHMEDVFKLF-RL 441

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
                 S+D I+L ++L+AS EL   E+  Q+H  AF+ G      + N LI +Y+KCG+
Sbjct: 442 LHSSMPSLDRISLNNVLSASAELGYFEMAKQVHAYAFKVGLVSDAILSNALIDTYAKCGS 501

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           +D A  +FE MG  RDV SW+++I GY   G+ + AL L+ +M   G  P+  T++ +L 
Sbjct: 502 LDDANKLFEIMGTGRDVFSWSSLIVGYAQFGYAKEALDLFARMRNLGVKPNHVTFVGVLI 561

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
           AC   GL ++G   ++ M  E  + P++EH  CV+DLLARAG LS+A+    ++     P
Sbjct: 562 ACSRVGLVDEGCYYYSIMEPEYGIVPTKEHCSCVIDLLARAGRLSEAAKFVDQM--PFEP 619

Query: 524 NI--WRALLSGCVLH 536
           +I  W  LL+    H
Sbjct: 620 DIIMWNTLLAASRTH 634



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 137/280 (48%), Gaps = 2/280 (0%)

Query: 187 VNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSR 246
           ++N ++ MY      D+A  +F  M  ++ +SW  ++          DA+ +F  M +  
Sbjct: 82  LSNHLITMYGRCAAPDSARMVFDGMLDRNPVSWAAVIAAHAQNSRCADAMGLFSSMLRLG 141

Query: 247 IICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSR 306
              D  AL + +   A LGDL  G+Q+HAQ +       L + N+++ MYSK G +    
Sbjct: 142 TAPDEFALGSAVRACAELGDLGLGRQVHAQAIKSDNGGHLIVQNALVTMYSKSGSVGDGF 201

Query: 307 SVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTA-SGE 365
           ++F +I +K L SW +II+G  Q G   +AL+ F +M  E     +     S+  A S  
Sbjct: 202 ALFERIRDKDLFSWGSIIAGLAQQGREMDALHIFREMIAEGMHHPNEFHFGSVFRACSVV 261

Query: 366 LAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNT 425
           + +LE   Q+HG+  +    R       L   Y++C  +D A  VF  +    D+VSWN+
Sbjct: 262 INSLEYGEQIHGLCVKYKLDRNSYAGCSLGDMYARCNKLDSAMKVFYRIES-PDLVSWNS 320

Query: 426 IIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
           +I  +  +G    A+ L+ +M  +   PD  T +++L AC
Sbjct: 321 LINAFSADGLLSEAMVLFSEMRYSSLKPDGITVMALLCAC 360



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/346 (22%), Positives = 156/346 (45%), Gaps = 25/346 (7%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y    L   Y +  K+  A  +F  I   ++VSW+ +I+ +S +G   ++M  FS M  S
Sbjct: 285 YAGCSLGDMYARCNKLDSAMKVFYRIESPDLVSWNSLINAFSADGLLSEAMVLFSEMRYS 344

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL----------------------E 103
            L P+  T++ +L A  G   L   RSIH  +VK GL                       
Sbjct: 345 SLKPDGITVMALLCACVGCDALRQGRSIHSYLVKLGLGGDVMVCNSLISMYTRCLDFPSA 404

Query: 104 SDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
            D+F    +  +V+ N+I+   + ++  +    LF     S    + +++  V+     L
Sbjct: 405 MDVFHETNDRDVVTWNSILTACVQHRHMEDVFKLFRLLHSSMPSLDRISLNNVLSASAEL 464

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC-KDVISWTRM 222
           G   + + +H    K+GL+ D  ++N+++D Y+    LD A ++F  M   +DV SW+ +
Sbjct: 465 GYFEMAKQVHAYAFKVGLVSDAILSNALIDTYAKCGSLDDANKLFEIMGTGRDVFSWSSL 524

Query: 223 MGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG-G 281
           +  +  F YA +AL +F  MR   +  + V  + ++   + +G +  G   ++ +    G
Sbjct: 525 IVGYAQFGYAKEALDLFARMRNLGVKPNHVTFVGVLIACSRVGLVDEGCYYYSIMEPEYG 584

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISG 326
           +       + +I + ++ G L  +    +Q+  E  ++ W  +++ 
Sbjct: 585 IVPTKEHCSCVIDLLARAGRLSEAAKFVDQMPFEPDIIMWNTLLAA 630


>gi|334182623|ref|NP_001185013.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191339|gb|AEE29460.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 928

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 164/543 (30%), Positives = 282/543 (51%), Gaps = 29/543 (5%)

Query: 19  GKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVL 78
           G +  A  +FD++ E++ +SW+ +   Y+ NG  E+S + FS M       NS T+  +L
Sbjct: 192 GNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLL 251

Query: 79  VAAAGLQNLELARSIHGLMVKFGLESDL----------------------FEGLKNPYLV 116
                + + +  R IHGL+VK G +S +                      F+ +    L+
Sbjct: 252 SVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLI 311

Query: 117 SCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLT 176
           S N+++A F+N+     A+ L      SG   N VT  + +  C          ++HGL 
Sbjct: 312 SWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLV 371

Query: 177 IKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDAL 236
           +  GL  +  + N+++ MY  + ++  + ++  +M  +DV++W  ++G + + E    AL
Sbjct: 372 VVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKAL 431

Query: 237 KIFREMRKSRIICDTVALLNLISVNAILGDL-KRGKQLHAQVVLGGLQSELRLSNSIIAM 295
             F+ MR   +  + + +++++S   + GDL +RGK LHA +V  G +S+  + NS+I M
Sbjct: 432 AAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITM 491

Query: 296 YSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSIT 355
           Y+KCGDL SS+ +FN +  +++++W A+++    +G   E L    KMR     S+D  +
Sbjct: 492 YAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGV-SLDQFS 550

Query: 356 LVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMG 415
               L+A+ +LA LE   QLHG+A + GF     + N     YSKCG +     +     
Sbjct: 551 FSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPP-S 609

Query: 416 FLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGL 475
             R + SWN +I   G +G+ E   A +H+M E G  P   T++S+L AC H GL + GL
Sbjct: 610 VNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGL 669

Query: 476 VIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN--IWRALLSGC 533
             ++ +  +  ++P+ EH  CV+DLL R+G L++A     K+   M PN  +WR+LL+ C
Sbjct: 670 AYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKM--PMKPNDLVWRSLLASC 727

Query: 534 VLH 536
            +H
Sbjct: 728 KIH 730



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 158/561 (28%), Positives = 272/561 (48%), Gaps = 45/561 (8%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y S+ +L  Y   G +  +  +F+E+P++NVVSW+ ++ GYS  G  E+ +  +  M 
Sbjct: 76  DVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMR 135

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------- 106
             G+  N  +M  V+ +   L++  L R I G +VK GLES L                 
Sbjct: 136 GEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVD 195

Query: 107 -----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                F+ +     +S N+I A +  N   +++  +F+  R      N+ T+ T++    
Sbjct: 196 YANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLG 255

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            +  +     IHGL +K+G    V V N++L MY+       A  +F++M  KD+ISW  
Sbjct: 256 HVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNS 315

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           +M  FV+   + DAL +   M  S    + V   + ++        ++G+ LH  VV+ G
Sbjct: 316 LMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSG 375

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           L     + N++++MY K G++  SR V  Q+  + +V+W A+I GY ++    +AL  F 
Sbjct: 376 LFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQ 435

Query: 342 KMRQEKTDSVDSITLVSILTA---SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
            MR E   S + IT+VS+L+A    G+L  LE    LH     AGF     V+N LI+ Y
Sbjct: 436 TMRVEGVSS-NYITVVSVLSACLLPGDL--LERGKPLHAYIVSAGFESDEHVKNSLITMY 492

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
           +KCG++  +  +F  +   R++++WN ++     +GHGE  L L  KM   G   D  ++
Sbjct: 493 AKCGDLSSSQDLFNGLDN-RNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSF 551

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEH----YGCVVDLLARAGCLSDASGLA 514
              L+A     +  +G     Q +    VK   EH    +    D+ ++ G +       
Sbjct: 552 SEGLSAAAKLAVLEEG-----QQLHGLAVKLGFEHDSFIFNAAADMYSKCGEI------- 599

Query: 515 GKLLEGMGPNIWRALLSGCVL 535
           G++++ + P++ R+L S  +L
Sbjct: 600 GEVVKMLPPSVNRSLPSWNIL 620



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 142/532 (26%), Positives = 244/532 (45%), Gaps = 32/532 (6%)

Query: 31  IPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQN--LE 88
           +P +N VSW+ ++ G    G + + M+ F  M   G+ P+SF ++  LV A G       
Sbjct: 1   MPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSF-VIASLVTACGRSGSMFR 59

Query: 89  LARSIHGLMVKFGLESDL----------------------FEGLKNPYLVSCNAIVAGFI 126
               +HG + K GL SD+                      FE + +  +VS  +++ G+ 
Sbjct: 60  EGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYS 119

Query: 127 NNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVS 186
           +    ++ + ++   RG G+  N  +M  VI  C  L   +L   I G  +K GL   ++
Sbjct: 120 DKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLA 179

Query: 187 VNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSR 246
           V NS++ M   + ++D A  IF +M  +D ISW  +   +    +  ++ +IF  MR+  
Sbjct: 180 VENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFH 239

Query: 247 IICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSR 306
              ++  +  L+SV   +   K G+ +H  VV  G  S + + N+++ MY+  G    + 
Sbjct: 240 DEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEAN 299

Query: 307 SVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGEL 366
            VF Q+  K L+SW ++++ +V +G + +AL     M      SV+ +T  S L A    
Sbjct: 300 LVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSM-ISSGKSVNYVTFTSALAACFTP 358

Query: 367 AALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTI 426
              E    LHG+   +G    + + N L+S Y K G +  +  V  +M   RDVV+WN +
Sbjct: 359 DFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMP-RRDVVAWNAL 417

Query: 427 IYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAG-LTNDGLVIFNQMIEEN 485
           I GY  +   + ALA +  M   G   +  T +S+L+AC   G L   G  +   ++   
Sbjct: 418 IGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAG 477

Query: 486 KVKPSQEHY-GCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
               S EH    ++ + A+ G LS +  L    L+      W A+L+    H
Sbjct: 478 --FESDEHVKNSLITMYAKCGDLSSSQDLFNG-LDNRNIITWNAMLAANAHH 526



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 145/348 (41%), Gaps = 63/348 (18%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L++ Y K G +  +++LF+ +  +N+++W+ ++   + +G  E+ +K  S M 
Sbjct: 481 DEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMR 540

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF---------------- 107
             G+  + F+    L AAA L  LE  + +HGL VK G E D F                
Sbjct: 541 SFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIG 600

Query: 108 EGLK------NPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
           E +K      N  L S N +++    +  F++    F+     G+ P  VT ++++  C 
Sbjct: 601 EVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACS 660

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
                      HG  +  GL        +  DM +    L+ AI+      C  VI    
Sbjct: 661 -----------HGGLVDKGL--------AYYDMIARDFGLEPAIE-----HCICVIDLLG 696

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
             G   + E           + K  +  + +   +L++   I G+L RG++  A   L  
Sbjct: 697 RSGRLAEAETF---------ISKMPMKPNDLVWRSLLASCKIHGNLDRGRK--AAENLSK 745

Query: 282 LQSE----LRLSNSIIAMYSKCGDLDSSRSV--FNQITEKSLVSWTAI 323
           L+ E      LS+++ A   +  D+++ R    F  I +K   SW  +
Sbjct: 746 LEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKL 793


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 181/624 (29%), Positives = 313/624 (50%), Gaps = 70/624 (11%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEK-NVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLP 69
           L+S Y K G  + A  +F+ +  K ++VSWS ++  ++ N    +++  F  M+  G  P
Sbjct: 67  LISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYP 126

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFG-LESDL---------------------- 106
           N +    V+ A +      +   I+G +VK G LE+D+                      
Sbjct: 127 NEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYK 186

Query: 107 -FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
            F+ +    LV+   ++  F      + A+ LF     SG VP+  T  +V+  C  LG 
Sbjct: 187 VFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGL 246

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYS-CLMD--LDAAIQIFREMECKDVISWTRM 222
            AL + +H   I+LGL LDV V  S++DMY+ C  D  +D + ++F +M   +V+SWT +
Sbjct: 247 LALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAI 306

Query: 223 MGLFVDF-EYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           +  +V   E   +A+++F +M    I  +  +  +++     L D   G+Q+++  V  G
Sbjct: 307 ITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLG 366

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           + S   + NS+I+MY++ G ++ +R  F+ + EK+LVS+ AI+ GY +N  + EA   F 
Sbjct: 367 IASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLF- 425

Query: 342 KMRQEKTDS---VDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
               E  D+   + + T  S+L+ +  + A+    Q+HG   + G+   + + N LIS Y
Sbjct: 426 ---NEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMY 482

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
           S+CGN++ A+ VF EM   R+V+SW ++I G+  +G    AL ++HKM ETG  P+  TY
Sbjct: 483 SRCGNIEAAFQVFNEMED-RNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITY 541

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
           +++L+AC H G+ ++G   FN M +E+ + P  EHY C+VDLL R+G L +A      + 
Sbjct: 542 VAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMP 601

Query: 519 EGMGPNIWRALLSGCVLH---------------------------------VGRFQDAEA 545
                 +WR LL  C +H                                  G+++D   
Sbjct: 602 LMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVK 661

Query: 546 LRSGSQKKGIIKIPGISFLNSTSR 569
           +R   +++ +IK  G S++   +R
Sbjct: 662 IRKSMKERNLIKEAGCSWIEVENR 685



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 112/384 (29%), Positives = 189/384 (49%), Gaps = 20/384 (5%)

Query: 148 PNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQI 207
           P+  T   +++ C+   +  L +L+H   ++ GL LD  V N+++ +YS   D + A  I
Sbjct: 24  PDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLI 83

Query: 208 FREMECK-DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGD 266
           F  M  K D++SW+ M+  F +      A+  F +M +     +      +I   +    
Sbjct: 84  FEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANY 143

Query: 267 LKRGKQLHAQVVLGG-LQSELRLSNSIIAMYSK-CGDLDSSRSVFNQITEKSLVSWTAII 324
              G+ ++  VV  G L++++ +   +I M+ K  GDL S+  VF+++ E++LV+WT +I
Sbjct: 144 AWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMI 203

Query: 325 SGYVQNGCAREALNQFIKMRQEKTDSV-DSITLVSILTASGELAALEICLQLHGIAFEAG 383
           + + Q GCAR+A++ F+ M  E +  V D  T  S+L+A  EL  L +  QLH      G
Sbjct: 204 TRFAQLGCARDAIDLFLDM--ELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLG 261

Query: 384 FPRYRSVQNCLISSYSKC---GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGH-GETA 439
                 V   L+  Y+KC   G+VD +  VFE+M    +V+SW  II  Y  +G   + A
Sbjct: 262 LALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMP-EHNVMSWTAIITAYVQSGECDKEA 320

Query: 440 LALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCV-- 497
           + L+ KM      P+  ++ S+L ACG+      G  +++       VK       CV  
Sbjct: 321 IELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSY-----AVKLGIASVNCVGN 375

Query: 498 --VDLLARAGCLSDASGLAGKLLE 519
             + + AR+G + DA      L E
Sbjct: 376 SLISMYARSGRMEDARKAFDILFE 399


>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
          Length = 1091

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 166/553 (30%), Positives = 291/553 (52%), Gaps = 30/553 (5%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEK-NVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           SKL+  Y K G +  A  +FD +  K NV  W++++ GY+  G  E+S+  F  M   G+
Sbjct: 354 SKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGI 413

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
            P+   +  +L     L         HG +VK G  +                       
Sbjct: 414 APDEHAISCLLKCITCLSCARDGLVAHGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVL 473

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F  +     +S N++++G  +N L  +A+ LF      G   ++VT+L+V+  C     
Sbjct: 474 VFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRY 533

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
                ++HG ++K GLI + S+ N++LDMYS   D  +  QIFR M  K+V+SWT M+  
Sbjct: 534 WFAGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITS 593

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGD--LKRGKQLHAQVVLGGLQ 283
           ++          + +EM    I  D  A+ +  +++A  GD  LK+GK +H   +  G++
Sbjct: 594 YMRAGLFDKVAGLLQEMVLDGIRPDVFAVTS--ALHAFAGDESLKQGKSVHGYTIRNGME 651

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
             L ++N+++ MY KC +++ +R +F+++T K ++SW  +I GY +N    E+ + F  M
Sbjct: 652 KLLPVANALMEMYVKCRNVEEARLIFDRVTNKDVISWNTLIGGYSRNNFPNESFSLFSDM 711

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
             +     +++T+  IL A+  +++LE   ++H  A   GF       N L+  Y KCG 
Sbjct: 712 LLQFRP--NAVTMTCILPAAASISSLERGREIHAYALRRGFLEDSYASNALVDMYVKCGA 769

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           + +A ++F+ +   ++++SW  +I GYG++G G+ A+AL+ +M  +G  PD++++ +IL 
Sbjct: 770 LLVARVLFDRLT-KKNLISWTIMIAGYGMHGFGKHAIALFEQMRGSGIEPDAASFSAILY 828

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
           AC H+GL  +G   F  M +E K++P  +HY C+VDLL+R G L +A      +      
Sbjct: 829 ACCHSGLAAEGRRFFKAMQKEYKIEPKLKHYTCIVDLLSRTGDLKEALEFIESMPIEPDS 888

Query: 524 NIWRALLSGCVLH 536
           +IW +LL GC +H
Sbjct: 889 SIWVSLLHGCRIH 901



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 128/490 (26%), Positives = 228/490 (46%), Gaps = 37/490 (7%)

Query: 10  KLLSNYFKSGKIKEAENLFDEIPEK--NVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           +L+  Y K G + EA  +FD +P +  +V  W+ ++  Y+  G  ++++  F  M   G+
Sbjct: 141 RLVLAYLKCGDLGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGV 200

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL----------------------ESD 105
            P++  +  VL   + L +L     IHGL+ K GL                       + 
Sbjct: 201 SPDAHAVSCVLKCVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAAR 260

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F+ +     +S N+++ G  +N     AV LF+     G   ++VT+L+V+  C  LG 
Sbjct: 261 VFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGY 320

Query: 166 RALCELIHGLTIKLGL----------ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK- 214
             + + +HG ++K GL          I D ++ + ++ MY    D+ +A ++F  M  K 
Sbjct: 321 GLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKG 380

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
           +V  W  +MG +       ++L +F +M +  I  D  A+  L+     L   + G   H
Sbjct: 381 NVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGLVAH 440

Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
             +V  G  ++  + N++I+ Y+K   +  +  VFN++  +  +SW ++ISG   NG   
Sbjct: 441 GYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLNS 500

Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
           EA+  FI+M  +  + +DS+TL+S+L A  +         +HG + + G     S+ N L
Sbjct: 501 EAIELFIRMWTQGQE-LDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGETSLANAL 559

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           +  YS C +      +F  MG  ++VVSW  +I  Y   G  +    L  +M   G  PD
Sbjct: 560 LDMYSNCSDWQSTNQIFRSMG-QKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPD 618

Query: 455 SSTYLSILNA 464
                S L+A
Sbjct: 619 VFAVTSALHA 628



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 148/569 (26%), Positives = 263/569 (46%), Gaps = 52/569 (9%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ L++ Y + G++++A  +FD +  ++ +SW+ +I G   NG+H  ++  FS M   G 
Sbjct: 242 ANALIAVYSRCGRMEDAARVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGT 301

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVK----FGLES------DLFEGLKNPYL-V 116
             +S T++ VL A AGL    + +++HG  VK    +GL+S      D   G K  ++ V
Sbjct: 302 EISSVTVLSVLPACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYV 361

Query: 117 SC----------------------NAIVAGFINNKLFQQAVLLFNFFRGSGLVPN--AVT 152
            C                      N I+ G+     F++++ LF      G+ P+  A++
Sbjct: 362 KCGDMASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAIS 421

Query: 153 MLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME 212
            L     C++     L  + HG  +KLG     +V N+++  Y+    +  A+ +F  M 
Sbjct: 422 CLLKCITCLSCARDGL--VAHGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMP 479

Query: 213 CKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQ 272
            +D ISW  ++          +A+++F  M       D+V LL+++   A       G+ 
Sbjct: 480 RQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRV 539

Query: 273 LHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC 332
           +H   V  GL  E  L+N+++ MYS C D  S+  +F  + +K++VSWTA+I+ Y++ G 
Sbjct: 540 VHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAGL 599

Query: 333 AREALNQFIKMRQEKT-DSV--DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS 389
                ++   + QE   D +  D   + S L A     +L+    +HG     G  +   
Sbjct: 600 ----FDKVAGLLQEMVLDGIRPDVFAVTSALHAFAGDESLKQGKSVHGYTIRNGMEKLLP 655

Query: 390 VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
           V N L+  Y KC NV+ A ++F+ +   +DV+SWNT+I GY  N     + +L+  M   
Sbjct: 656 VANALMEMYVKCRNVEEARLIFDRVTN-KDVISWNTLIGGYSRNNFPNESFSLFSDMLLQ 714

Query: 450 GEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSD 509
              P++ T   IL A         G  I    +    ++ S      +VD+  + G L  
Sbjct: 715 FR-PNAVTMTCILPAAASISSLERGREIHAYALRRGFLEDSYAS-NALVDMYVKCGALLV 772

Query: 510 ASGLAGKLLEGMGPNI--WRALLSGCVLH 536
           A  L  +L +    N+  W  +++G  +H
Sbjct: 773 ARVLFDRLTK---KNLISWTIMIAGYGMH 798



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 116/370 (31%), Positives = 186/370 (50%), Gaps = 13/370 (3%)

Query: 119 NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIK 178
            ++++ +     FQ+AV LF   +  G+ P+A  +  V++   +LGS    E+IHGL  K
Sbjct: 173 TSLMSAYAKAGDFQEAVSLFRQMQCCGVSPDAHAVSCVLKCVSSLGSLTEGEVIHGLLEK 232

Query: 179 LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKI 238
           LGL    +V N+++ +YS    ++ A ++F  M  +D ISW  M+G      + G A+ +
Sbjct: 233 LGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDL 292

Query: 239 FREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL-------QS---ELRL 288
           F +M        +V +L+++   A LG    GK +H   V  GL       QS   +  L
Sbjct: 293 FSKMWSQGTEISSVTVLSVLPACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAAL 352

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVS-WTAIISGYVQNGCAREALNQFIKMRQEK 347
            + ++ MY KCGD+ S+R VF+ ++ K  V  W  I+ GY + G   E+L+ F++M  E 
Sbjct: 353 GSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQM-HEL 411

Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
             + D   +  +L     L+     L  HG   + GF    +V N LIS Y+K   +  A
Sbjct: 412 GIAPDEHAISCLLKCITCLSCARDGLVAHGYIVKLGFGAQCAVCNALISFYAKSNMIGDA 471

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
            +VF  M   +D +SWN++I G   NG    A+ L+ +M   G+  DS T LS+L AC  
Sbjct: 472 VLVFNRMP-RQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQ 530

Query: 468 AGLTNDGLVI 477
           +     G V+
Sbjct: 531 SRYWFAGRVV 540



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 145/296 (48%), Gaps = 13/296 (4%)

Query: 200 DLDAAIQIFREM--ECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNL 257
           DL  A  +F  M  +  DV  WT +M  +       +A+ +FR+M+   +  D  A+  +
Sbjct: 151 DLGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVSPDAHAVSCV 210

Query: 258 ISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSL 317
           +   + LG L  G+ +H  +   GL     ++N++IA+YS+CG ++ +  VF+ +  +  
Sbjct: 211 LKCVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDA 270

Query: 318 VSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHG 377
           +SW ++I G   NG    A++ F KM  + T+ + S+T++S+L A   L    I   +HG
Sbjct: 271 ISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTE-ISSVTVLSVLPACAGLGYGLIGKAVHG 329

Query: 378 IAFEAGFPR-YRSVQNC---------LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
            + ++G      SVQ+          L+  Y KCG++  A  VF+ M    +V  WN I+
Sbjct: 330 YSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIM 389

Query: 428 YGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIE 483
            GY   G  E +L+L+ +M E G  PD      +L          DGLV    +++
Sbjct: 390 GGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGLVAHGYIVK 445



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 161/372 (43%), Gaps = 36/372 (9%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ LL  Y      +    +F  + +KNVVSW+ +I  Y   G  +K       M+L G+
Sbjct: 556 ANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGI 615

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL--------------------- 106
            P+ F +   L A AG ++L+  +S+HG  ++ G+E  L                     
Sbjct: 616 RPDVFAVTSALHAFAGDESLKQGKSVHGYTIRNGMEKLLPVANALMEMYVKCRNVEEARL 675

Query: 107 -FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFN----FFRGSGLVPNAVTMLTVIRGCV 161
            F+ + N  ++S N ++ G+  N    ++  LF+     FR     PNAVTM  ++    
Sbjct: 676 IFDRVTNKDVISWNTLIGGYSRNNFPNESFSLFSDMLLQFR-----PNAVTMTCILPAAA 730

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
           ++ S      IH   ++ G + D   +N+++DMY     L  A  +F  +  K++ISWT 
Sbjct: 731 SISSLERGREIHAYALRRGFLEDSYASNALVDMYVKCGALLVARVLFDRLTKKNLISWTI 790

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQ-LHAQVVLG 280
           M+  +    +   A+ +F +MR S I  D  +   ++      G    G++   A     
Sbjct: 791 MIAGYGMHGFGKHAIALFEQMRGSGIEPDAASFSAILYACCHSGLAAEGRRFFKAMQKEY 850

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISG---YVQNGCAREA 336
            ++ +L+    I+ + S+ GDL  +      +  E     W +++ G   +     A + 
Sbjct: 851 KIEPKLKHYTCIVDLLSRTGDLKEALEFIESMPIEPDSSIWVSLLHGCRIHKNVKLAEKV 910

Query: 337 LNQFIKMRQEKT 348
            ++  K+  E T
Sbjct: 911 ADKVFKLEPENT 922



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/184 (34%), Positives = 100/184 (54%), Gaps = 4/184 (2%)

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKS--LVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           L   ++  Y KCGDL  +R+VF+ +  ++  +  WT+++S Y + G  +EA++ F +M Q
Sbjct: 138 LGKRLVLAYLKCGDLGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQM-Q 196

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
               S D+  +  +L     L +L     +HG+  + G  +  +V N LI+ YS+CG ++
Sbjct: 197 CCGVSPDAHAVSCVLKCVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRME 256

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            A  VF+ M   RD +SWN++I G   NG   TA+ L+ KM   G    S T LS+L AC
Sbjct: 257 DAARVFDSM-HPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPAC 315

Query: 466 GHAG 469
              G
Sbjct: 316 AGLG 319



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 47/77 (61%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y S+ L+  Y K G +  A  LFD + +KN++SW+I+I GY ++GF + ++  F  M 
Sbjct: 753 DSYASNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGFGKHAIALFEQMR 812

Query: 64  LSGLLPNSFTMVGVLVA 80
            SG+ P++ +   +L A
Sbjct: 813 GSGIEPDAASFSAILYA 829


>gi|242091211|ref|XP_002441438.1| hypothetical protein SORBIDRAFT_09g026705 [Sorghum bicolor]
 gi|241946723|gb|EES19868.1| hypothetical protein SORBIDRAFT_09g026705 [Sorghum bicolor]
          Length = 771

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 169/555 (30%), Positives = 298/555 (53%), Gaps = 26/555 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L++ Y   G+  +A  +FDE+P +++VSW+ ++     NG  E + +A   MM
Sbjct: 146 DVFAGNTLVTFYAARGRAADARRVFDEMPARDIVSWNSLVSALLTNGMLEDAKRAVVGMM 205

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES----------------DL- 106
            SG+  N  ++V V+ A    ++     S+HGL++K GL+S                DL 
Sbjct: 206 RSGIPVNVASLVSVVPACGTERDEGFGLSVHGLVLKSGLDSVVNLGNALVDMYGKFGDLE 265

Query: 107 -----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                F G++    VS N+ +  F +    +  + +F       + P +VT+ +++   V
Sbjct: 266 SSMRVFNGMQEKNEVSWNSALGCFAHAGFHEDVLEMFRVMSEHEVTPGSVTLSSLLPALV 325

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            LG   L + +HG +I+  +  D+ + NS++DMY+    L+ A  IF  +E ++V+SW  
Sbjct: 326 DLGYFHLGKEVHGYSIRRAMESDIFIANSLMDMYAKFGCLEKASAIFENIEGRNVVSWNA 385

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+          +A  +  EM+K+    ++  L+NL+   + +  +K GKQ+HA  +   
Sbjct: 386 MIANLAQNGAETEAFSLVIEMQKNGECPNSFTLVNLLPACSRVASVKMGKQIHAWSIHRS 445

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           L S+L +SN++I +Y+KCG L  ++ +F++ +EK  VS+  +I GY Q+ C  E+L+ F 
Sbjct: 446 LMSDLFVSNALIDVYAKCGQLSVAQDIFDR-SEKDDVSYNTLIVGYSQSQCCFESLHLFQ 504

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +MR    +  D+++ +  L+A   L+A +   ++HG+        +  + N L+  Y+K 
Sbjct: 505 QMRSAGIE-YDAVSFMGCLSACANLSAFKQGKEIHGVLVRRLLNTHPFLANSLLDLYTKG 563

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G +  A  +F  +   +DV SWNT+I GYG++G  + A  L+  M + G   D  +Y+++
Sbjct: 564 GMLATASKIFNRIT-RKDVASWNTMILGYGMHGQIDVAFELFDLMKDDGVDYDHVSYIAV 622

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L+AC H GL + G   F+QMI +N +KP Q HY C+VDLL RAG LS++  +   +    
Sbjct: 623 LSACSHGGLVDRGKKYFSQMIAQN-IKPQQMHYACMVDLLGRAGQLSESVEIITNMPFPA 681

Query: 522 GPNIWRALLSGCVLH 536
             ++W ALL  C +H
Sbjct: 682 NSDVWGALLGSCRIH 696



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 122/501 (24%), Positives = 235/501 (46%), Gaps = 28/501 (5%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+  Y K G ++ +  +F+ + EKN VSW+  +  ++  GFHE  ++ F  M    + P 
Sbjct: 254 LVDMYGKFGDLESSMRVFNGMQEKNEVSWNSALGCFAHAGFHEDVLEMFRVMSEHEVTPG 313

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF----------------------E 108
           S T+  +L A   L    L + +HG  ++  +ESD+F                      E
Sbjct: 314 SVTLSSLLPALVDLGYFHLGKEVHGYSIRRAMESDIFIANSLMDMYAKFGCLEKASAIFE 373

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            ++   +VS NA++A    N    +A  L    + +G  PN+ T++ ++  C  + S  +
Sbjct: 374 NIEGRNVVSWNAMIANLAQNGAETEAFSLVIEMQKNGECPNSFTLVNLLPACSRVASVKM 433

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
            + IH  +I   L+ D+ V+N+++D+Y+    L  A  IF   E KD +S+  ++  +  
Sbjct: 434 GKQIHAWSIHRSLMSDLFVSNALIDVYAKCGQLSVAQDIFDRSE-KDDVSYNTLIVGYSQ 492

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
            +   ++L +F++MR + I  D V+ +  +S  A L   K+GK++H  +V   L +   L
Sbjct: 493 SQCCFESLHLFQQMRSAGIEYDAVSFMGCLSACANLSAFKQGKEIHGVLVRRLLNTHPFL 552

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
           +NS++ +Y+K G L ++  +FN+IT K + SW  +I GY  +G    A   F  M+ +  
Sbjct: 553 ANSLLDLYTKGGMLATASKIFNRITRKDVASWNTMILGYGMHGQIDVAFELFDLMKDDGV 612

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
           D  D ++ +++L+A      ++   +             +    C++    + G +  + 
Sbjct: 613 D-YDHVSYIAVLSACSHGGLVDRGKKYFSQMIAQNIKPQQMHYACMVDLLGRAGQLSESV 671

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL-NACGH 467
            +   M F  +   W  ++    ++G  E A      + E    P+ S Y ++L N    
Sbjct: 672 EIITNMPFPANSDVWGALLGSCRIHGDIELARLAAEHLFELK--PEHSGYYTLLRNMYSE 729

Query: 468 AGLTNDGLVIFNQMIEENKVK 488
           +G+ N+   I   +++  KV+
Sbjct: 730 SGMWNEANEI-KTLMKSRKVQ 749


>gi|356570738|ref|XP_003553542.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Glycine max]
          Length = 777

 Score =  273 bits (697), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 184/615 (29%), Positives = 300/615 (48%), Gaps = 64/615 (10%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + +L+ Y K G +K+A   FD +  ++VVSW+I+I GYS NG    ++  +  M+ SG  
Sbjct: 119 NHILNMYGKCGSLKDARKAFDTMQLRSVVSWTIMISGYSQNGQENDAIIMYIQMLRSGYF 178

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE----------------------SDL 106
           P+  T   ++ A     +++L   +HG ++K G +                      SD+
Sbjct: 179 PDQLTFGSIIKACCIAGDIDLGGQLHGHVIKSGYDHHLIAQNALISMYTKFGQIAHASDV 238

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLF-NFFRGSGLVPNAVTMLTVIRGCVALGS 165
           F  +    L+S  +++ GF       +A+ LF + FR     PN     +V   C +L  
Sbjct: 239 FTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFRQGVYQPNEFIFGSVFSACRSLLK 298

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
                 I G+  K GL  +V    S+ DMY+    L +A + F ++E  D++SW  ++  
Sbjct: 299 PEFGRQIQGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAKRAFYQIESPDLVSWNAIIAA 358

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
             + +   +A+  F +M    ++ D +  LNL+        L +G Q+H+ ++  GL   
Sbjct: 359 LANSD-VNEAIYFFCQMIHMGLMPDDITFLNLLCACGSPMTLNQGMQIHSYIIKMGLDKV 417

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEK-SLVSWTAIISGYVQNGCAREALNQFIKMR 344
             + NS++ MY+KC +L  + +VF  I+E  +LVSW AI+S   Q+    EA   F K+ 
Sbjct: 418 AAVCNSLLTMYTKCSNLHDAFNVFKDISENGNLVSWNAILSACSQHKQPGEAFRLF-KLM 476

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
               +  D+IT+ +IL    EL +LE+  Q+H  + ++G     SV N LI  Y+KCG +
Sbjct: 477 LFSENKPDNITITTILGTCAELVSLEVGNQVHCFSVKSGLVVDVSVSNRLIDMYAKCGLL 536

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
             A  VF+      D+VSW+++I GY   G G+ AL L+  M   G  P+  TYL +L+A
Sbjct: 537 KHARYVFDSTQN-PDIVSWSSLIVGYAQFGLGQEALNLFRMMRNLGVQPNEVTYLGVLSA 595

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C H GL  +G  ++N M  E  + P++EH  C+VDLLARAGCL +A     K   G  P+
Sbjct: 596 CSHIGLVEEGWHLYNTMEIELGIPPTREHVSCMVDLLARAGCLYEAENFIKK--TGFDPD 653

Query: 525 I--WRALLSGCVLH---------------------------------VGRFQDAEALRSG 549
           I  W+ LL+ C  H                                  G +++   LR+ 
Sbjct: 654 ITMWKTLLASCKTHGNVDIAERAAENILKLDPSNSAALVLLSNIHASAGNWKEVARLRNL 713

Query: 550 SQKKGIIKIPGISFL 564
            ++ G+ K+PG S++
Sbjct: 714 MKQMGVQKVPGQSWI 728



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 118/433 (27%), Positives = 197/433 (45%), Gaps = 7/433 (1%)

Query: 116 VSCNAIVAGFINNKLFQQAVLLFNF-FRGSGLVPNAVTMLTVIRGCVALGSRALCELIHG 174
           +S N+ +      + +++A+  FNF  + S +     T + +I  C  + S    + IH 
Sbjct: 45  LSTNSYINLMCKQQHYREALDTFNFHLKNSSIQLEPSTYVNLILACTNVRSLKYGKRIHD 104

Query: 175 LTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGD 234
             +K     D+ + N +L+MY     L  A + F  M+ + V+SWT M+  +       D
Sbjct: 105 HILKSNCQPDLVLQNHILNMYGKCGSLKDARKAFDTMQLRSVVSWTIMISGYSQNGQEND 164

Query: 235 ALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIA 294
           A+ ++ +M +S    D +   ++I    I GD+  G QLH  V+  G    L   N++I+
Sbjct: 165 AIIMYIQMLRSGYFPDQLTFGSIIKACCIAGDIDLGGQLHGHVIKSGYDHHLIAQNALIS 224

Query: 295 MYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSI 354
           MY+K G +  +  VF  I+ K L+SW ++I+G+ Q G   EAL  F  M ++     +  
Sbjct: 225 MYTKFGQIAHASDVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFRQGVYQPNEF 284

Query: 355 TLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM 414
              S+ +A   L   E   Q+ G+  + G  R       L   Y+K G +  A   F ++
Sbjct: 285 IFGSVFSACRSLLKPEFGRQIQGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAKRAFYQI 344

Query: 415 GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDG 474
               D+VSWN II     N     A+  + +M   G +PD  T+L++L ACG     N G
Sbjct: 345 E-SPDLVSWNAIIAALA-NSDVNEAIYFFCQMIHMGLMPDDITFLNLLCACGSPMTLNQG 402

Query: 475 LVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCV 534
           + I + +I+    K +      ++ +  +   L DA  +   + E      W A+LS C 
Sbjct: 403 MQIHSYIIKMGLDKVAAV-CNSLLTMYTKCSNLHDAFNVFKDISENGNLVSWNAILSACS 461

Query: 535 LHVGRFQDAEALR 547
            H    Q  EA R
Sbjct: 462 QHK---QPGEAFR 471



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 78/172 (45%), Gaps = 19/172 (11%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D   S++L+  Y K G +K A  +FD     ++VSWS +I GY+  G  ++++  F  M
Sbjct: 518 VDVSVSNRLIDMYAKCGLLKHARYVFDSTQNPDIVSWSSLIVGYAQFGLGQEALNLFRMM 577

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLM-VKFGLESDLFEGLKNPYLVSCNAI 121
              G+ PN  T +GVL A + +  +E    ++  M ++ G+             VSC   
Sbjct: 578 RNLGVQPNEVTYLGVLSACSHIGLVEEGWHLYNTMEIELGIPPTREH-------VSCMV- 629

Query: 122 VAGFINNKLFQQAVLLF---NFFRGSGLVPNAVTMLTVIRGCVALGSRALCE 170
                   L  +A  L+   NF + +G  P+     T++  C   G+  + E
Sbjct: 630 -------DLLARAGCLYEAENFIKKTGFDPDITMWKTLLASCKTHGNVDIAE 674


>gi|4966374|gb|AAD34705.1|AC006341_33 >F3O9.28 [Arabidopsis thaliana]
          Length = 1027

 Score =  272 bits (696), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 164/543 (30%), Positives = 282/543 (51%), Gaps = 29/543 (5%)

Query: 19  GKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVL 78
           G +  A  +FD++ E++ +SW+ +   Y+ NG  E+S + FS M       NS T+  +L
Sbjct: 299 GNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLL 358

Query: 79  VAAAGLQNLELARSIHGLMVKFGLESDL----------------------FEGLKNPYLV 116
                + + +  R IHGL+VK G +S +                      F+ +    L+
Sbjct: 359 SVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLI 418

Query: 117 SCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLT 176
           S N+++A F+N+     A+ L      SG   N VT  + +  C          ++HGL 
Sbjct: 419 SWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLV 478

Query: 177 IKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDAL 236
           +  GL  +  + N+++ MY  + ++  + ++  +M  +DV++W  ++G + + E    AL
Sbjct: 479 VVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKAL 538

Query: 237 KIFREMRKSRIICDTVALLNLISVNAILGDL-KRGKQLHAQVVLGGLQSELRLSNSIIAM 295
             F+ MR   +  + + +++++S   + GDL +RGK LHA +V  G +S+  + NS+I M
Sbjct: 539 AAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITM 598

Query: 296 YSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSIT 355
           Y+KCGDL SS+ +FN +  +++++W A+++    +G   E L    KMR     S+D  +
Sbjct: 599 YAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGV-SLDQFS 657

Query: 356 LVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMG 415
               L+A+ +LA LE   QLHG+A + GF     + N     YSKCG +     +     
Sbjct: 658 FSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPP-S 716

Query: 416 FLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGL 475
             R + SWN +I   G +G+ E   A +H+M E G  P   T++S+L AC H GL + GL
Sbjct: 717 VNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGL 776

Query: 476 VIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN--IWRALLSGC 533
             ++ +  +  ++P+ EH  CV+DLL R+G L++A     K+   M PN  +WR+LL+ C
Sbjct: 777 AYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKM--PMKPNDLVWRSLLASC 834

Query: 534 VLH 536
            +H
Sbjct: 835 KIH 837



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 147/542 (27%), Positives = 264/542 (48%), Gaps = 32/542 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y S+ +L  Y   G +  +  +F+E+P++NVVSW+ ++ GYS  G  E+ +  +    
Sbjct: 208 DVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKDES 267

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG---LESDLFEGLKNPYLVSCNA 120
           L         ++G +V +     L +  S+  ++   G     + +F+ +     +S N+
Sbjct: 268 LGR------QIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNS 321

Query: 121 IVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLG 180
           I A +  N   +++  +F+  R      N+ T+ T++     +  +     IHGL +K+G
Sbjct: 322 IAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMG 381

Query: 181 LILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFR 240
               V V N++L MY+       A  +F++M  KD+ISW  +M  FV+   + DAL +  
Sbjct: 382 FDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLC 441

Query: 241 EMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCG 300
            M  S    + V   + ++        ++G+ LH  VV+ GL     + N++++MY K G
Sbjct: 442 SMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIG 501

Query: 301 DLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSIL 360
           ++  SR V  Q+  + +V+W A+I GY ++    +AL  F  MR E   S + IT+VS+L
Sbjct: 502 EMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSS-NYITVVSVL 560

Query: 361 TA---SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFL 417
           +A    G+L  LE    LH     AGF     V+N LI+ Y+KCG++  +  +F  +   
Sbjct: 561 SACLLPGDL--LERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDN- 617

Query: 418 RDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVI 477
           R++++WN ++     +GHGE  L L  KM   G   D  ++   L+A     +  +G   
Sbjct: 618 RNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEG--- 674

Query: 478 FNQMIEENKVKPSQEH----YGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGC 533
             Q +    VK   EH    +    D+ ++ G +       G++++ + P++ R+L S  
Sbjct: 675 --QQLHGLAVKLGFEHDSFIFNAAADMYSKCGEI-------GEVVKMLPPSVNRSLPSWN 725

Query: 534 VL 535
           +L
Sbjct: 726 IL 727



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 146/546 (26%), Positives = 254/546 (46%), Gaps = 37/546 (6%)

Query: 7   NSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSG 66
           +++ L++ Y K G++K A +LFD +P +N VSW+ ++ G    G + + M+ F  M   G
Sbjct: 109 HTNTLINMYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLG 168

Query: 67  LLPNSFTMVGVLVAAAGLQN--LELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAG 124
           + P+SF ++  LV A G           +HG + K GL SD++      +L     +V+ 
Sbjct: 169 IKPSSF-VIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVS- 226

Query: 125 FINNKLFQQAVLLFNFFRGSGLVP--NAVTMLTVIRGCVALGS----------RALCELI 172
             + K+F++             +P  N V+  +++ G    G            +L   I
Sbjct: 227 -CSRKVFEE-------------MPDRNVVSWTSLMVGYSDKGEPEEVIDIYKDESLGRQI 272

Query: 173 HGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYA 232
            G  +K GL   ++V NS++ M   + ++D A  IF +M  +D ISW  +   +    + 
Sbjct: 273 IGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHI 332

Query: 233 GDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSI 292
            ++ +IF  MR+     ++  +  L+SV   +   K G+ +H  VV  G  S + + N++
Sbjct: 333 EESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTL 392

Query: 293 IAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVD 352
           + MY+  G    +  VF Q+  K L+SW ++++ +V +G + +AL     M      SV+
Sbjct: 393 LRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSM-ISSGKSVN 451

Query: 353 SITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFE 412
            +T  S L A       E    LHG+   +G    + + N L+S Y K G +  +  V  
Sbjct: 452 YVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLL 511

Query: 413 EMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAG-LT 471
           +M   RDVV+WN +I GY  +   + ALA +  M   G   +  T +S+L+AC   G L 
Sbjct: 512 QMP-RRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLL 570

Query: 472 NDGLVIFNQMIEENKVKPSQEHY-GCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALL 530
             G  +   ++       S EH    ++ + A+ G LS +  L    L+      W A+L
Sbjct: 571 ERGKPLHAYIVSAG--FESDEHVKNSLITMYAKCGDLSSSQDLFNG-LDNRNIITWNAML 627

Query: 531 SGCVLH 536
           +    H
Sbjct: 628 AANAHH 633



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 144/297 (48%), Gaps = 28/297 (9%)

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           +H L +K  + L V   N++++MY+    +  A  +F  M  ++ +SW  MM   V    
Sbjct: 94  VHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGL 153

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKR-GKQLHAQVVLGGLQSELRLSN 290
             + ++ FR+M    I   +  + +L++     G + R G Q+H  V   GL S++ +S 
Sbjct: 154 YLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVST 213

Query: 291 SIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDS 350
           +I+ +Y   G +  SR VF ++ ++++VSWT+++ GY   G   E ++ +      K +S
Sbjct: 214 AILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIY------KDES 267

Query: 351 VDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIV 410
           +                      Q+ G   ++G     +V+N LIS     GNVD A  +
Sbjct: 268 LGR--------------------QIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYI 307

Query: 411 FEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
           F++M   RD +SWN+I   Y  NGH E +  ++  M    +  +S+T  ++L+  GH
Sbjct: 308 FDQMS-ERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGH 363



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 111/229 (48%), Gaps = 13/229 (5%)

Query: 270 GKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQ 329
           G+ +HA  V G ++  +  +N++I MY+K G +  +R +F+ +  ++ VSW  ++SG V+
Sbjct: 91  GRAVHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVR 150

Query: 330 NGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAAL-EICLQLHGIAFEAGFPRYR 388
            G   E +  F KM         S  + S++TA G   ++    +Q+HG   ++G     
Sbjct: 151 VGLYLEGMEFFRKMCDLGIKP-SSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDV 209

Query: 389 SVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH---- 444
            V   ++  Y   G V  +  VFEEM   R+VVSW +++ GY   G  E  + +Y     
Sbjct: 210 YVSTAILHLYGVYGLVSCSRKVFEEMPD-RNVVSWTSLMVGYSDKGEPEEVIDIYKDESL 268

Query: 445 ------KMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKV 487
                 ++ ++G     +   S+++  G  G  +    IF+QM E + +
Sbjct: 269 GRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTI 317



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 145/348 (41%), Gaps = 63/348 (18%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L++ Y K G +  +++LF+ +  +N+++W+ ++   + +G  E+ +K  S M 
Sbjct: 588 DEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMR 647

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF---------------- 107
             G+  + F+    L AAA L  LE  + +HGL VK G E D F                
Sbjct: 648 SFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIG 707

Query: 108 EGLK------NPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
           E +K      N  L S N +++    +  F++    F+     G+ P  VT ++++  C 
Sbjct: 708 EVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACS 767

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
                      HG  +  GL        +  DM +    L+ AI+      C  VI    
Sbjct: 768 -----------HGGLVDKGL--------AYYDMIARDFGLEPAIE-----HCICVIDLLG 803

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
             G   + E           + K  +  + +   +L++   I G+L RG++  A   L  
Sbjct: 804 RSGRLAEAETF---------ISKMPMKPNDLVWRSLLASCKIHGNLDRGRK--AAENLSK 852

Query: 282 LQSE----LRLSNSIIAMYSKCGDLDSSRSV--FNQITEKSLVSWTAI 323
           L+ E      LS+++ A   +  D+++ R    F  I +K   SW  +
Sbjct: 853 LEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKL 900


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  272 bits (696), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 181/624 (29%), Positives = 313/624 (50%), Gaps = 70/624 (11%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEK-NVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLP 69
           L+S Y K G  + A  +F+ +  K ++VSWS ++  ++ N    +++  F  M+  G  P
Sbjct: 85  LISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYP 144

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFG-LESDL---------------------- 106
           N +    V+ A +      +   I+G +VK G LE+D+                      
Sbjct: 145 NEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYK 204

Query: 107 -FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
            F+ +    LV+   ++  F      + A+ LF     SG VP+  T  +V+  C  LG 
Sbjct: 205 VFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGL 264

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYS-CLMD--LDAAIQIFREMECKDVISWTRM 222
            AL + +H   I+LGL LDV V  S++DMY+ C  D  +D + ++F +M   +V+SWT +
Sbjct: 265 LALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAI 324

Query: 223 MGLFVDF-EYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           +  +V   E   +A+++F +M    I  +  +  +++     L D   G+Q+++  V  G
Sbjct: 325 ITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLG 384

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           + S   + NS+I+MY++ G ++ +R  F+ + EK+LVS+ AI+ GY +N  + EA   F 
Sbjct: 385 IASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLF- 443

Query: 342 KMRQEKTDS---VDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
               E  D+   + + T  S+L+ +  + A+    Q+HG   + G+   + + N LIS Y
Sbjct: 444 ---NEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMY 500

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
           S+CGN++ A+ VF EM   R+V+SW ++I G+  +G    AL ++HKM ETG  P+  TY
Sbjct: 501 SRCGNIEAAFQVFNEMED-RNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITY 559

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
           +++L+AC H G+ ++G   FN M +E+ + P  EHY C+VDLL R+G L +A      + 
Sbjct: 560 VAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMP 619

Query: 519 EGMGPNIWRALLSGCVLH---------------------------------VGRFQDAEA 545
                 +WR LL  C +H                                  G+++D   
Sbjct: 620 LMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVK 679

Query: 546 LRSGSQKKGIIKIPGISFLNSTSR 569
           +R   +++ +IK  G S++   +R
Sbjct: 680 IRKSMKERNLIKEAGCSWIEVENR 703



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 117/422 (27%), Positives = 198/422 (46%), Gaps = 20/422 (4%)

Query: 110 LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALC 169
           LKNP        +   ++      A    +        P+  T   +++ C+   +  L 
Sbjct: 4   LKNPNFEPLKNRLIRQLDVGRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLG 63

Query: 170 ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK-DVISWTRMMGLFVD 228
           +L+H   ++ GL LD  V N+++ +YS   D + A  IF  M  K D++SW+ M+  F +
Sbjct: 64  KLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFAN 123

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG-LQSELR 287
                 A+  F +M +     +      +I   +       G+ ++  VV  G L++++ 
Sbjct: 124 NSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVC 183

Query: 288 LSNSIIAMYSK-CGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
           +   +I M+ K  GDL S+  VF+++ E++LV+WT +I+ + Q GCAR+A++ F+ M  E
Sbjct: 184 VGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDM--E 241

Query: 347 KTDSV-DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC---G 402
            +  V D  T  S+L+A  EL  L +  QLH      G      V   L+  Y+KC   G
Sbjct: 242 LSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADG 301

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGH-GETALALYHKMTETGEVPDSSTYLSI 461
           +VD +  VFE+M    +V+SW  II  Y  +G   + A+ L+ KM      P+  ++ S+
Sbjct: 302 SVDDSRKVFEQMP-EHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSV 360

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCV----VDLLARAGCLSDASGLAGKL 517
           L ACG+      G  +++       VK       CV    + + AR+G + DA      L
Sbjct: 361 LKACGNLSDPYTGEQVYSY-----AVKLGIASVNCVGNSLISMYARSGRMEDARKAFDIL 415

Query: 518 LE 519
            E
Sbjct: 416 FE 417


>gi|147784524|emb|CAN61725.1| hypothetical protein VITISV_032420 [Vitis vinifera]
          Length = 763

 Score =  272 bits (696), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 173/552 (31%), Positives = 286/552 (51%), Gaps = 36/552 (6%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           +L+ Y K G +K+A+ +FD +PE+NVVSW+ VI GYS NG    +++ +  M+ SG++P+
Sbjct: 104 ILNMYGKCGSLKDAQKVFDAMPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPD 163

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVK--FGLES--------------------DLFE 108
            FT   ++ A + L ++ L R +H  ++K  FG                       D+F 
Sbjct: 164 QFTFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMYTKSNVIIDALDVFS 223

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGL-VPNAVTMLTVIRGCVALGSRA 167
            +    L+S  +++AGF       +A+  F      G+ +PN     +V   C +L    
Sbjct: 224 RMATRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPE 283

Query: 168 LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
               +HG++IK GL  DV    S+ DMY+    L  A  +F ++   D+++W     +  
Sbjct: 284 YGRQLHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQIGRPDLVAWN---AIIA 340

Query: 228 DFEYAGDA---LKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            F Y GDA   +  F +MR   +I D + + +L+       +L +G Q+H  +   GL  
Sbjct: 341 GFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSELYQGMQVHGYINKMGLDL 400

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQI-TEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
           ++ + N+++ MY+KC +L  +   F ++     LVSW AI++  + +  A E     +K+
Sbjct: 401 DVPVCNTLLTMYAKCSELRDAIFFFEEMRCNADLVSWNAILTACMHHDQAEEVFG-LLKL 459

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
                   D ITL ++L AS E  ++EI  Q+H  A + G     SV N LI  Y+KCG+
Sbjct: 460 MCISQHRPDYITLTNVLGASAETVSIEIGNQVHCYALKTGLNCDISVTNGLIDLYAKCGS 519

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           +  A  +F+ +    DVVSW+++I GY   G+GE AL L+  M      P+  T++ +L 
Sbjct: 520 LKTARKIFDSV-INPDVVSWSSLILGYAQFGYGEEALKLFKTMRRLDVKPNHVTFVGVLT 578

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
           AC H GL  +G  ++  M +E  + P++EH  C+VDLLARAGCL++A     ++     P
Sbjct: 579 ACSHVGLVEEGWQLYGTMEKEFGIVPTREHCSCMVDLLARAGCLNEAEAFIHQM--AFDP 636

Query: 524 NI--WRALLSGC 533
           +I  W+ LL+ C
Sbjct: 637 DIVVWKTLLAAC 648



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 118/423 (27%), Positives = 200/423 (47%), Gaps = 7/423 (1%)

Query: 117 SCNAIVAGFINNKLFQQAVLLFNFF-RGSGLVPNAVTMLTVIRGCVALGSRALCELIHGL 175
           S N  +      KLF +A+  F F  + +G      T   +I  C  L S      IH  
Sbjct: 29  SSNEYITTLCKQKLFNEAIKAFEFLQKKTGFCLTLSTYAYLISACSYLRSLEHGRKIHDH 88

Query: 176 TIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDA 235
            +K     D+++ N +L+MY     L  A ++F  M  ++V+SWT ++  +      G+A
Sbjct: 89  MLKSKSHPDLTLQNHILNMYGKCGSLKDAQKVFDAMPERNVVSWTSVIAGYSQNGQGGNA 148

Query: 236 LKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAM 295
           L+ + +M +S ++ D     ++I   + LGD+  G+QLHA V+     + +   N++I+M
Sbjct: 149 LEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISM 208

Query: 296 YSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSIT 355
           Y+K   +  +  VF+++  + L+SW ++I+G+ Q G   EAL  F +M  +     +   
Sbjct: 209 YTKSNVIIDALDVFSRMATRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFI 268

Query: 356 LVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMG 415
             S+ +A   L   E   QLHG++ + G  R       L   Y+KCG +  A +VF ++G
Sbjct: 269 FGSVFSACSSLLQPEYGRQLHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQIG 328

Query: 416 FLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGL 475
              D+V+WN II G+   G  + A+A + +M   G +PD  T  S+L AC        G+
Sbjct: 329 -RPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSELYQGM 387

Query: 476 VIFNQMIEENKVKPSQEHYGCVVDLLARAGC--LSDASGLAGKLLEGMGPNIWRALLSGC 533
            +   +   NK+    +   C   L   A C  L DA     ++        W A+L+ C
Sbjct: 388 QVHGYI---NKMGLDLDVPVCNTLLTMYAKCSELRDAIFFFEEMRCNADLVSWNAILTAC 444

Query: 534 VLH 536
           + H
Sbjct: 445 MHH 447



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 122/435 (28%), Positives = 201/435 (46%), Gaps = 25/435 (5%)

Query: 54  KSMKAFSHMML-SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL------ 106
           +++KAF  +   +G      T   ++ A + L++LE  R IH  M+K     DL      
Sbjct: 45  EAIKAFEFLQKKTGFCLTLSTYAYLISACSYLRSLEHGRKIHDHMLKSKSHPDLTLQNHI 104

Query: 107 ----------------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNA 150
                           F+ +    +VS  +++AG+  N     A+  +     SG++P+ 
Sbjct: 105 LNMYGKCGSLKDAQKVFDAMPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQ 164

Query: 151 VTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFRE 210
            T  ++I+ C +LG   L   +H   +K      +   N+++ MY+    +  A+ +F  
Sbjct: 165 FTFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMYTKSNVIIDALDVFSR 224

Query: 211 MECKDVISWTRMMGLFVDFEYAGDALKIFREM-RKSRIICDTVALLNLISVNAILGDLKR 269
           M  +D+ISW  M+  F    Y  +AL  F+EM  +   + +     ++ S  + L   + 
Sbjct: 225 MATRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEY 284

Query: 270 GKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQ 329
           G+QLH   +  GL  ++    S+  MY+KCG L  +R VF QI    LV+W AII+G+  
Sbjct: 285 GRQLHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQIGRPDLVAWNAIIAGFAY 344

Query: 330 NGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS 389
            G A+EA+  F +MR +     D IT+ S+L A    + L   +Q+HG   + G      
Sbjct: 345 GGDAKEAIAFFSQMRHQGLIP-DEITVRSLLCACTSPSELYQGMQVHGYINKMGLDLDVP 403

Query: 390 VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
           V N L++ Y+KC  +  A   FEEM    D+VSWN I+     +   E    L   M  +
Sbjct: 404 VCNTLLTMYAKCSELRDAIFFFEEMRCNADLVSWNAILTACMHHDQAEEVFGLLKLMCIS 463

Query: 450 GEVPDSSTYLSILNA 464
              PD  T  ++L A
Sbjct: 464 QHRPDYITLTNVLGA 478



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 171/370 (46%), Gaps = 27/370 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +    L   Y K G +  A  +F +I   ++V+W+ +I G++  G  ++++  FS M 
Sbjct: 300 DVFAGCSLCDMYAKCGLLSCARVVFYQIGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMR 359

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------- 106
             GL+P+  T+  +L A      L     +HG + K GL+ D+                 
Sbjct: 360 HQGLIPDEITVRSLLCACTSPSELYQGMQVHGYINKMGLDLDVPVCNTLLTMYAKCSELR 419

Query: 107 -----FEGLK-NPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                FE ++ N  LVS NAI+   +++   ++   L      S   P+ +T+  V+   
Sbjct: 420 DAIFFFEEMRCNADLVSWNAILTACMHHDQAEEVFGLLKLMCISQHRPDYITLTNVLGAS 479

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
               S  +   +H   +K GL  D+SV N ++D+Y+    L  A +IF  +   DV+SW+
Sbjct: 480 AETVSIEIGNQVHCYALKTGLNCDISVTNGLIDLYAKCGSLKTARKIFDSVINPDVVSWS 539

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++  +  F Y  +ALK+F+ MR+  +  + V  + +++  + +G ++ G QL+  +   
Sbjct: 540 SLILGYAQFGYGEEALKLFKTMRRLDVKPNHVTFVGVLTACSHVGLVEEGWQLYGTMEKE 599

Query: 281 -GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISG--YVQNGCAREA 336
            G+       + ++ + ++ G L+ + +  +Q+  +  +V W  +++    V    AR  
Sbjct: 600 FGIVPTREHCSCMVDLLARAGCLNEAEAFIHQMAFDPDIVVWKTLLAACKSVHQALARRT 659

Query: 337 LNQFIKMRQE 346
             +  K + E
Sbjct: 660 NLKVWKKQHE 669


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  272 bits (696), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 172/561 (30%), Positives = 293/561 (52%), Gaps = 32/561 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L++ Y K G ++EA  +F+ +PE+N+VSW+ +I G+S NGF ++S  AF  M+
Sbjct: 135 DVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREML 194

Query: 64  L--SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL--------------- 106
           +     +P+  T+V VL   AG +++E   ++HGL VK GL  +L               
Sbjct: 195 VGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRF 254

Query: 107 -------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFR--GSGLVPNAVTMLTVI 157
                  F+      +VS N+++ G+   +   +   L    +   + +  +  T+L V+
Sbjct: 255 LSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVL 314

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
             C+        + +HG + + GL  +  V N+ +  Y+    L ++ ++F  M+ K V 
Sbjct: 315 PVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVS 374

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           SW  ++  +        AL ++ +M  S +  D   + +L+   + +  L  G+++H   
Sbjct: 375 SWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFA 434

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           +  GL  +  +  S++++Y  CG   +++ +F+ +  +SLVSW  +I+GY QNG   EA+
Sbjct: 435 LRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAI 494

Query: 338 NQFIKMRQEKTDSVD--SITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLI 395
           N F   RQ  +D +    I ++ +  A  +L+AL +  +LH  A +A       V + +I
Sbjct: 495 NLF---RQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSII 551

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
             Y+K G + L+  +F+ +   +DV SWN II GYG++G G+ AL L+ KM   G  PD 
Sbjct: 552 DMYAKGGCIGLSQRIFDRLR-EKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDD 610

Query: 456 STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAG 515
            T+  IL AC HAGL  DGL  FNQM+  + ++P  EHY CVVD+L RAG + DA  L  
Sbjct: 611 FTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIE 670

Query: 516 KLLEGMGPNIWRALLSGCVLH 536
           ++       IW +LLS C +H
Sbjct: 671 EMPGDPDSRIWSSLLSSCRIH 691



 Score =  229 bits (584), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 165/577 (28%), Positives = 283/577 (49%), Gaps = 48/577 (8%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C D   ++++++ Y   G   ++  +FD++  KN+  W+ ++  Y+ N   E +M  FS 
Sbjct: 31  CNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSE 90

Query: 62  MM-LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--------------- 105
           ++ ++   P++FT+  V+ A AGL +L L + IHG+  K  L SD               
Sbjct: 91  LISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCG 150

Query: 106 -------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFR-----GSGLVPNAVTM 153
                  +FE +    LVS N+I+ GF  N   Q++   FN FR         VP+  T+
Sbjct: 151 LVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQES---FNAFREMLVGEESFVPDVATL 207

Query: 154 LTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC 213
           +TV+  C           +HGL +KLGL  ++ VNNS++DMYS    L  A  +F + + 
Sbjct: 208 VTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDK 267

Query: 214 KDVISWTRMMGLFVDFEYAGDALKIFREMR--KSRIICDTVALLNLISVNAILGDLKRGK 271
           K+++SW  M+G +   E       + ++M+   +++  D   +LN++ V     +L+  K
Sbjct: 268 KNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLK 327

Query: 272 QLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNG 331
           +LH      GLQS   ++N+ IA Y++CG L SS  VF+ +  K++ SW A++ GY QN 
Sbjct: 328 ELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNS 387

Query: 332 CAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ 391
             R+AL+ +++M     D  D  T+ S+L A   + +L    ++HG A   G      + 
Sbjct: 388 DPRKALDLYLQMTDSGLDP-DWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIG 446

Query: 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE 451
             L+S Y  CG    A ++F+ M   R +VSWN +I GY  NG  + A+ L+ +M   G 
Sbjct: 447 ISLLSLYICCGKPFAAQVLFDGMEH-RSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGI 505

Query: 452 VPDSSTYLSILNACGHAGLTNDG-----LVIFNQMIEENKVKPSQEHYGCVVDLLARAGC 506
            P     + +  AC        G       +   + E+  V  S      ++D+ A+ GC
Sbjct: 506 QPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSS------IIDMYAKGGC 559

Query: 507 LSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDA 543
           +  +  +  +L E    + W  +++G  +H GR ++A
Sbjct: 560 IGLSQRIFDRLREKDVAS-WNVIIAGYGIH-GRGKEA 594



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 138/541 (25%), Positives = 242/541 (44%), Gaps = 75/541 (13%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML--S 65
           ++ L+  Y K   + EA+ LFD+  +KN+VSW+ +I GY+      ++      M    +
Sbjct: 242 NNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDA 301

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-------------------- 105
            +  + FT++ VL        L+  + +HG   + GL+S+                    
Sbjct: 302 KMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSS 361

Query: 106 --LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
             +F+ +    + S NA++ G+  N   ++A+ L+     SGL P+  T+ +++  C  +
Sbjct: 362 ERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRM 421

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
            S    E IHG  ++ GL +D  +  S+L +Y C     AA  +F  ME + ++SW  M+
Sbjct: 422 KSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMI 481

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
             +       +A+ +FR+M    I    +A++ +    + L  L+ GK+LH   +   L 
Sbjct: 482 AGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLT 541

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
            ++ +S+SII MY+K G +  S+ +F+++ EK + SW  II+GY  +G  +EAL  F KM
Sbjct: 542 EDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKM 601

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQ-------LHGIAFEAGFPRYRSVQNCLIS 396
            +      D  T   IL A      +E  L+       LH I  E     Y     C++ 
Sbjct: 602 LRLGLKP-DDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNI--EPKLEHY----TCVVD 654

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
              + G +D A  + EEM                                   G+ PDS 
Sbjct: 655 MLGRAGRIDDALRLIEEM----------------------------------PGD-PDSR 679

Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK 516
            + S+L++C   G    G  + N+++E    KP  E+Y  + +L A +G   D   + G+
Sbjct: 680 IWSSLLSSCRIHGNLGLGEKVANKLLELEPEKP--ENYVLISNLFAGSGKWDDVRRVRGR 737

Query: 517 L 517
           +
Sbjct: 738 M 738



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/260 (31%), Positives = 132/260 (50%), Gaps = 17/260 (6%)

Query: 266 DLKRGKQLHAQVVLGGLQ--SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAI 323
           D++ G++LH ++V    Q  ++  L+  II MYS CG    SR VF+++  K+L  W AI
Sbjct: 13  DIEVGRRLH-EMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAI 71

Query: 324 ISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG 383
           +S Y +N    +A++ F ++        D+ TL  ++ A   L  L +   +HG+A +  
Sbjct: 72  VSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMD 131

Query: 384 FPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALY 443
                 V N LI+ Y KCG V+ A  VFE M   R++VSWN+II G+  NG  + +   +
Sbjct: 132 LVSDVFVGNALIAMYGKCGLVEEAVKVFEHMP-ERNLVSWNSIICGFSENGFLQESFNAF 190

Query: 444 HKMT--ETGEVPDSSTYLSILNACG-----HAGLTNDGLVIFNQMIEENKVKPSQEHYGC 496
            +M   E   VPD +T +++L  C        G+   GL +   + EE  V  S      
Sbjct: 191 REMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNS------ 244

Query: 497 VVDLLARAGCLSDASGLAGK 516
           ++D+ ++   LS+A  L  K
Sbjct: 245 LIDMYSKCRFLSEAQLLFDK 264



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 107/238 (44%), Gaps = 35/238 (14%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +DP+    LLS Y   GK   A+ LFD +  +++VSW+++I GYS NG  ++++  F  M
Sbjct: 441 VDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQM 500

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK----------------------F 100
           +  G+ P    ++ V  A + L  L L + +H   +K                       
Sbjct: 501 LSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCI 560

Query: 101 GLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
           GL   +F+ L+   + S N I+AG+  +   ++A+ LF      GL P+  T   ++  C
Sbjct: 561 GLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMAC 620

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDL-------DAAIQIFREM 211
              G      L+         +L++      L+ Y+C++D+       D A+++  EM
Sbjct: 621 SHAG------LVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEM 672


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  272 bits (696), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 174/625 (27%), Positives = 294/625 (47%), Gaps = 63/625 (10%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  S L+  Y K G+I+ A  +F  +PE+N V+W+++++GY+  G     +K F  M
Sbjct: 246 LDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSM 305

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
           M   +  N FT+  VL   A  +NL+  + IH L++K G E +                 
Sbjct: 306 MELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLA 365

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +F+ +K P +V  +A++         ++++ LF+  R    +PN  T+ +++   
Sbjct: 366 IDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAA 425

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMY---SCLMDLDAAIQIFREMECKDVI 217
              G+    + IH    K G   DV+V+N+++ MY    C+ D     +++  M  +D+I
Sbjct: 426 TNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHD---GTKLYESMVDRDLI 482

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           SW   +    D       L IF  M +   I +    ++++   + L D+  G+Q+HA +
Sbjct: 483 SWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHI 542

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           +   L     +  ++I MY+KC  L+ +   FN+++ + L +WT II+ Y Q     +AL
Sbjct: 543 IKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKAL 602

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
           N F +M+QE     +  TL   L+    LA+LE   QLH + F++G      V + L+  
Sbjct: 603 NYFRQMQQEGVKP-NEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDM 661

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           Y+KCG ++ A  +FE +   RD ++WNTII GY  NG G  AL  +  M + G  PD  T
Sbjct: 662 YAKCGCMEEAEALFEAL-IRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVT 720

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL 517
           +  IL+AC H GL  +G   FN M  +  + P+ +H  C+VD+L R G   +      K+
Sbjct: 721 FTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKM 780

Query: 518 LEGMGPNIWRALLSGCVLH---------------------------------VGRFQDAE 544
                  IW  +L    +H                                  GR+ D +
Sbjct: 781 QLSQNALIWETVLGASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVK 840

Query: 545 ALRSGSQKKGIIKIPGISFLNSTSR 569
            +RS    KG+ K PG S++ +  +
Sbjct: 841 RVRSLMSSKGVKKEPGCSWVEANGQ 865



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 147/604 (24%), Positives = 261/604 (43%), Gaps = 49/604 (8%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L++ Y K      A  +  ++P+++VVSW+ +I G    GF   S+  F  M   G++PN
Sbjct: 153 LVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPN 212

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFE---------------------- 108
            FT+   L A +    L+L + +H    K GL  DLF                       
Sbjct: 213 EFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFI 272

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
           G+     V+ N ++ G+         + LF       +  N  T+ TV++GC    +   
Sbjct: 273 GMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQ 332

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYS-CLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
            ++IH L IK G   +  +   ++DMYS C + +D AI +F+ ++  D++ W+ ++    
Sbjct: 333 GQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAID-AIGVFKTIKKPDIVVWSALITCLD 391

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
               + +++K+F  MR    + +   + +L+S     G+L+ G+ +HA V   G ++++ 
Sbjct: 392 QQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVA 451

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
           +SN+++ MY K G +     ++  + ++ L+SW A +SG    G     L  F  M +E 
Sbjct: 452 VSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEG 511

Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
               +  T +SIL +   L  +    Q+H    +        V   LI  Y+KC  ++ A
Sbjct: 512 FIP-NMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDA 570

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
            + F  +  +RD+ +W  II  Y     GE AL  + +M + G  P+  T    L+ C  
Sbjct: 571 DVAFNRLS-VRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSS 629

Query: 468 AGLTNDGLVIFNQMIEENKVKPSQEHYG-CVVDLLARAGCLSDASGLAGKLLEGMGPNIW 526
                 G  + + + +   V  S    G  +VD+ A+ GC+ +A  L   L+       W
Sbjct: 630 LASLEGGQQLHSMVFKSGHV--SDMFVGSALVDMYAKCGCMEEAEALFEALIR-RDTIAW 686

Query: 527 RALLSGCVLHVGRFQDAEALR------------------SGSQKKGIIKIPGISFLNSTS 568
             ++ G   +    +   A R                  S    +G+++  G    NS  
Sbjct: 687 NTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVE-EGKEHFNSMY 745

Query: 569 RDFG 572
           RDFG
Sbjct: 746 RDFG 749



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 127/498 (25%), Positives = 236/498 (47%), Gaps = 37/498 (7%)

Query: 42  VIHG--YSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK 99
           V+H   Y  N  H+K+  A  + +             +L   A  ++L +A++IHGL+VK
Sbjct: 81  VVHNFPYRFNFEHQKTEDAKGNQVCWSSKKKLKYYSSMLRECASKRSLGVAKAIHGLIVK 140

Query: 100 --FGLESDLFEGLKNPY--------------------LVSCNAIVAGFINNKLFQQAVLL 137
                +S L+  L N Y                    +VS  A++ G +       ++ L
Sbjct: 141 DVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYL 200

Query: 138 FNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSC 197
           F   +  G++PN  T+ T ++ C    +  L + +H    KLGL+LD+ V ++++D+Y+ 
Sbjct: 201 FQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAK 260

Query: 198 LMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNL 257
             +++ A ++F  M  ++ ++W  ++  +         LK+F  M +  + C+   L  +
Sbjct: 261 CGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTV 320

Query: 258 ISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSL 317
           +   A   +LK+G+ +H+ ++  G +    +   ++ MYSKCG    +  VF  I +  +
Sbjct: 321 LKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDI 380

Query: 318 VSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHG 377
           V W+A+I+   Q G + E++  F  MR   T   +  T+ S+L+A+     L+    +H 
Sbjct: 381 VVWSALITCLDQQGQSEESIKLFHLMRLGDTLP-NQYTICSLLSAATNTGNLQYGQSIHA 439

Query: 378 IAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGE 437
             ++ GF    +V N L++ Y K G V     ++E M   RD++SWN  + G    G  +
Sbjct: 440 CVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESM-VDRDLISWNAYLSGLHDCGMYD 498

Query: 438 TALALYHKMTETGEVPDSSTYLSILNACG-----HAGLTNDGLVIFNQMIEENKVKPSQE 492
             L +++ M E G +P+  T++SIL +C      H G      +I NQ+ + N V  +  
Sbjct: 499 RPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTA-- 556

Query: 493 HYGCVVDLLARAGCLSDA 510
               ++D+ A+   L DA
Sbjct: 557 ----LIDMYAKCMYLEDA 570


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  272 bits (696), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 182/608 (29%), Positives = 307/608 (50%), Gaps = 63/608 (10%)

Query: 15  YFKSGKIKEAENLFDEIPEK-NVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFT 73
           Y K   +  A  LFD +PEK +VVSW+ +I  YS NG   ++++ F  M  + L PN++T
Sbjct: 261 YTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYT 320

Query: 74  MVGVLVAAAGLQNLELARSIHGLMVK----------------------FGLESDLFEGLK 111
            V  L A      ++    IH  ++K                       G  +++F  + 
Sbjct: 321 FVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMD 380

Query: 112 NPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCEL 171
           +   +S N++++GF+ N L+ +A+  ++  R +G  P+ V ++++I      G+      
Sbjct: 381 DWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQ 440

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           IH   +K GL  D+ V NS++DMY+    +     IF +M  KDV+SWT ++        
Sbjct: 441 IHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGS 500

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
              AL++FRE++   I  D + + +++   + L  +   K++H+ ++  GL S+L L N 
Sbjct: 501 HSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGL-SDLVLQNG 559

Query: 292 IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
           I+ +Y +CG++D +  +F  I  K +VSWT++IS YV NG A EAL  F  M++   +  
Sbjct: 560 IVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEP- 618

Query: 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVF 411
           DSI+LVSIL+A+  L+AL+   ++HG     GF    S+ + L+  Y++CG ++ +  VF
Sbjct: 619 DSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVF 678

Query: 412 EEMGFLR--DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAG 469
               F+R  D+V W ++I  YG++G G  A+ L+ +M +    PD   ++++L AC H+G
Sbjct: 679 ---NFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSG 735

Query: 470 LTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRAL 529
           L N+G      M  E +++P  EHY C+VDLL RA  L +A      +       +W AL
Sbjct: 736 LMNEGRRFLESMKYEYQLEPWPEHYVCLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCAL 795

Query: 530 LSGCVLHVG---------------------------------RFQDAEALRSGSQKKGII 556
           L  C +H                                   R++D E +R   +  G+ 
Sbjct: 796 LGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYAAERRWKDVEEVRMRMKASGLK 855

Query: 557 KIPGISFL 564
           K PG S++
Sbjct: 856 KNPGCSWI 863



 Score =  224 bits (572), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 159/526 (30%), Positives = 263/526 (50%), Gaps = 27/526 (5%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S++L+  Y K G + +AE LFD +P K + +W+ +I  Y  NG    S++ +  M +SG+
Sbjct: 153 STRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGI 212

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF---------------EGLKN 112
             ++ T   +L A   L++      +HGL +K G  S +F                G + 
Sbjct: 213 PLDACTFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQ 272

Query: 113 PY--------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
            +        +VS N++++ + +N    +A+ LF   + + L PN  T +  ++ C    
Sbjct: 273 LFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSS 332

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
                  IH   +K    ++V V N+++ MY+    +  A  IF  M+  D ISW  M+ 
Sbjct: 333 FIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLS 392

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            FV      +AL+ + EMR +    D VA++++I+ +A  G+   G Q+HA  +  GL S
Sbjct: 393 GFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGLDS 452

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           +L++ NS++ MY+K   +     +F+++ +K +VSWT II+G+ QNG    AL  F +++
Sbjct: 453 DLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQ 512

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
            E  D +D + + SIL A   L  +    ++H      G      +QN ++  Y +CGNV
Sbjct: 513 LEGID-LDVMMISSILLACSGLKLISSVKEIHSYIIRKGLSDL-VLQNGIVDVYGECGNV 570

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           D A  +FE + F +DVVSW ++I  Y  NG    AL L+H M ETG  PDS + +SIL+A
Sbjct: 571 DYAARMFELIEF-KDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSA 629

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
                    G  I   +I +  V         +VD+ AR G L  +
Sbjct: 630 AASLSALKKGKEIHGFLIRKGFVLEGSLA-STLVDMYARCGTLEKS 674



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 116/429 (27%), Positives = 227/429 (52%), Gaps = 25/429 (5%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           I+ + ++ L++ Y + GK+ EA N+F  + + + +SW+ ++ G+  NG + ++++ +  M
Sbjct: 351 INVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEM 410

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------- 106
             +G  P+   ++ ++ A+A   N      IH   +K GL+SDL                
Sbjct: 411 RDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSM 470

Query: 107 ------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                 F+ + +  +VS   I+AG   N    +A+ LF   +  G+  + + + +++  C
Sbjct: 471 KYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLAC 530

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             L   +  + IH   I+ GL  D+ + N ++D+Y    ++D A ++F  +E KDV+SWT
Sbjct: 531 SGLKLISSVKEIHSYIIRKGLS-DLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWT 589

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+  +V    A +AL++F  M+++ +  D+++L++++S  A L  LK+GK++H  ++  
Sbjct: 590 SMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRK 649

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           G   E  L+++++ MY++CG L+ SR+VFN I  K LV WT++I+ Y  +GC R A++ F
Sbjct: 650 GFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLF 709

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQ-LHGIAFEAGFPRYRSVQNCLISSYS 399
            +M  E   + D I  V++L A      +    + L  + +E     +     CL+    
Sbjct: 710 RRMEDESI-APDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYVCLVDLLG 768

Query: 400 KCGNVDLAY 408
           +  +++ AY
Sbjct: 769 RANHLEEAY 777



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 155/313 (49%), Gaps = 21/313 (6%)

Query: 267 LKRGKQLHAQVVLG-GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIIS 325
           L  G+Q+HA ++    L + + LS  ++ MY KCG L  +  +F+ +  K++ +W A+I 
Sbjct: 130 LSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIG 189

Query: 326 GYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFP 385
            YV NG    +L  + +MR      +D+ T   IL A G L       ++HG+A + G+ 
Sbjct: 190 AYVTNGEPLGSLELYREMRVSGI-PLDACTFPCILKACGLLKDRRCGAEVHGLAIKEGYV 248

Query: 386 RYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHK 445
               V N ++  Y+KC +++ A  +F+ M    DVVSWN++I  Y  NG    AL L+ +
Sbjct: 249 SIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGE 308

Query: 446 MTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY------GCVVD 499
           M +    P++ T+++ L AC  +     G+ I   +++ +       +Y        ++ 
Sbjct: 309 MQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSS-------YYINVFVANALIA 361

Query: 500 LLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCV---LHVGRFQDAEALRSGSQKKGII 556
           + AR G + +A+ +    ++      W ++LSG V   L+    Q    +R   QK  ++
Sbjct: 362 MYARFGKMGEAANIFYN-MDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLV 420

Query: 557 KIPGISFLNSTSR 569
            +  IS + +++R
Sbjct: 421 AV--ISIIAASAR 431


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  272 bits (696), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 172/609 (28%), Positives = 298/609 (48%), Gaps = 57/609 (9%)

Query: 11   LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
            L+S Y + G +  A  LF+ +P+++++SW+ +I GY+      ++MK +  M   G+ P 
Sbjct: 426  LISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPG 485

Query: 71   SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFE 108
              T + +L A          + IH  +++ G++S+                      +FE
Sbjct: 486  RVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFE 545

Query: 109  GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            G +   ++S N+++AG   +  ++ A  LF   +  GL P+ +T  +V+ GC    +  L
Sbjct: 546  GTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALEL 605

Query: 169  CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
               IH L I+ GL LDV++ N++++MY     L  A ++F  +  ++V+SWT M+G F D
Sbjct: 606  GRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFAD 665

Query: 229  FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
                  A ++F +M+            +++        L  GK++ A ++  G + +  +
Sbjct: 666  QGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGV 725

Query: 289  SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
             N++I+ YSK G +  +R VF+++  + ++SW  +I+GY QNG    AL QF    QE+ 
Sbjct: 726  GNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTAL-QFAYQMQEQG 784

Query: 349  DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
              ++  + VSIL A    +ALE   ++H    +        V   LIS Y+KCG+++ A 
Sbjct: 785  VVLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQ 844

Query: 409  IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
             VF+     ++VV+WN +I  Y  +G    AL  ++ M + G  PD ST+ SIL+AC H+
Sbjct: 845  EVFDNFT-EKNVVTWNAMINAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSACNHS 903

Query: 469  GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRA 528
            GL  +G  IF+ +  ++ + P+ EHYGC+V LL RAG   +A  L  ++       +W  
Sbjct: 904  GLVMEGNRIFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQMPFPPDAAVWET 963

Query: 529  LLSGCVLH---------------------------------VGRFQDAEALRSGSQKKGI 555
            LL  C +H                                  GR+ D   +R   + +GI
Sbjct: 964  LLGACRIHGNVALAEHAANNALKLNARNPAVYVLLSNVYAAAGRWDDVAKIRRVMEGRGI 1023

Query: 556  IKIPGISFL 564
             K PG S++
Sbjct: 1024 RKEPGRSWI 1032



 Score =  225 bits (573), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 138/501 (27%), Positives = 247/501 (49%), Gaps = 24/501 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           DP   + LL+ Y K   +  A  +F  I  ++VVS++ ++  Y+   + E+ +  F  M 
Sbjct: 217 DPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMS 276

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------- 106
             G+ P+  T + +L A      L+  + IH L V  GL SD+                 
Sbjct: 277 SEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVA 336

Query: 107 -----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                 E   +  +V  NA++A    +  +++A   +   R  G+V N  T L+V+  C 
Sbjct: 337 GAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACS 396

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
              +    ELIH    ++G   DV + NS++ MY+   DL  A ++F  M  +D+ISW  
Sbjct: 397 TSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNA 456

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++  +   E  G+A+K++++M+   +    V  L+L+S          GK +H  ++  G
Sbjct: 457 IIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSG 516

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           ++S   L+N+++ MY +CG +  +++VF     + ++SW ++I+G+ Q+G    A   F+
Sbjct: 517 IKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFL 576

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +M++E  +  D IT  S+L       ALE+  Q+H +  E+G     ++ N LI+ Y +C
Sbjct: 577 EMKKEGLEP-DKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRC 635

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G++  AY VF  +   R+V+SW  +I G+   G    A  L+ +M   G  P  ST+ SI
Sbjct: 636 GSLQDAYEVFHSLRH-RNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSI 694

Query: 462 LNACGHAGLTNDGLVIFNQMI 482
           L AC  +   ++G  +   ++
Sbjct: 695 LKACMSSACLDEGKKVIAHIL 715



 Score =  205 bits (522), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 129/529 (24%), Positives = 254/529 (48%), Gaps = 25/529 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + S+ L++ Y K   + +A  +F ++P ++V+SW+ +I  Y+  GF +K+ + F  M 
Sbjct: 116 DIFLSNLLINMYVKCRSVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQ 175

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
            +G +P+  T + +L A      LE  + IH  +++ G + D                  
Sbjct: 176 TAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLP 235

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +F G+    +VS N ++  +      ++ + LF      G+ P+ VT + ++    
Sbjct: 236 SARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFT 295

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
                   + IH L +  GL  D+ V  ++  M+    D+  A Q       +DV+ +  
Sbjct: 296 TPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNA 355

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++       +  +A + + +MR   ++ +    L++++  +    L  G+ +H+ +   G
Sbjct: 356 LIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVG 415

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
             S++++ NS+I+MY++CGDL  +R +FN + ++ L+SW AII+GY +     EA+  + 
Sbjct: 416 HSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYK 475

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +M+ E       +T + +L+A    +A      +H     +G      + N L++ Y +C
Sbjct: 476 QMQSEGVKP-GRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRC 534

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G++  A  VFE     RD++SWN++I G+  +G  E A  L+ +M + G  PD  T+ S+
Sbjct: 535 GSIMEAQNVFEGTR-ARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASV 593

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
           L  C +      G  I + +I E+ ++        ++++  R G L DA
Sbjct: 594 LVGCKNPEALELGRQI-HMLIIESGLQLDVNLGNALINMYIRCGSLQDA 641



 Score =  195 bits (495), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 120/457 (26%), Positives = 229/457 (50%), Gaps = 26/457 (5%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ L++ Y + G I EA+N+F+    ++++SW+ +I G++ +G +E + K F  M   GL
Sbjct: 524 ANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGL 583

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL--------------------- 106
            P+  T   VLV     + LEL R IH L+++ GL+ D+                     
Sbjct: 584 EPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYE 643

Query: 107 -FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
            F  L++  ++S  A++ GF +    ++A  LF   +  G  P   T  ++++ C++   
Sbjct: 644 VFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSAC 703

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
               + +    +  G  LD  V N+++  YS    +  A ++F +M  +D++SW +M+  
Sbjct: 704 LDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAG 763

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +      G AL+   +M++  ++ +  + +++++  +    L+ GK++HA++V   +Q +
Sbjct: 764 YAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQGD 823

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           +R+  ++I+MY+KCG L+ ++ VF+  TEK++V+W A+I+ Y Q+G A +AL+ F  M +
Sbjct: 824 VRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINAYAQHGLASKALDFFNCMDK 883

Query: 346 EKTDSVDSITLVSILTASGELA-ALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
           E     D  T  SIL+A       +E       +  + G         CL+    + G  
Sbjct: 884 EGIKP-DGSTFTSILSACNHSGLVMEGNRIFSSLESQHGLSPTIEHYGCLVGLLGRAGRF 942

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALA 441
             A  +  +M F  D   W T++    +  HG  ALA
Sbjct: 943 QEAETLINQMPFPPDAAVWETLLGACRI--HGNVALA 977



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 130/496 (26%), Positives = 237/496 (47%), Gaps = 33/496 (6%)

Query: 85  QNLELARSIHGLMVKFGLESDLFEG--------------------LKNPY--LVSCNAIV 122
           ++L  A+ IH  MV+ G+  D+F                      LK P   ++S N+++
Sbjct: 96  RSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMPRRDVISWNSLI 155

Query: 123 AGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLI 182
           + +      ++A  LF   + +G +P+ +T ++++  C +       + IH   I+ G  
Sbjct: 156 SCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQ 215

Query: 183 LDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREM 242
            D  V NS+L+MY    DL +A Q+F  +  +DV+S+  M+GL+    Y  + + +F +M
Sbjct: 216 RDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQM 275

Query: 243 RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDL 302
               I  D V  +NL+        L  GK++H   V  GL S++R+  ++  M+ +CGD+
Sbjct: 276 SSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDV 335

Query: 303 DSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTA 362
             ++       ++ +V + A+I+   Q+G   EA  Q+ +MR +    ++  T +S+L A
Sbjct: 336 AGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGV-VMNRTTYLSVLNA 394

Query: 363 SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVS 422
                AL     +H    E G      + N LIS Y++CG++  A  +F  M   RD++S
Sbjct: 395 CSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMP-KRDLIS 453

Query: 423 WNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMI 482
           WN II GY        A+ LY +M   G  P   T+L +L+AC ++   +DG +I   ++
Sbjct: 454 WNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDIL 513

Query: 483 EENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN---IWRALLSGCVLHVGR 539
               +K +      ++++  R G + +A      + EG        W ++++G   H G 
Sbjct: 514 RSG-IKSNGHLANALMNMYRRCGSIMEAQ----NVFEGTRARDIISWNSMIAGHAQH-GS 567

Query: 540 FQDAEALRSGSQKKGI 555
           ++ A  L    +K+G+
Sbjct: 568 YEAAYKLFLEMKKEGL 583



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 114/434 (26%), Positives = 208/434 (47%), Gaps = 16/434 (3%)

Query: 137 LFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYS 196
           L N ++      N    + +++ C    S A  + IH   ++ G+  D+ ++N +++MY 
Sbjct: 69  LSNAYQPRPTETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYV 128

Query: 197 CLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLN 256
               +  A Q+F +M  +DVISW  ++  +    +   A ++F EM+ +  I   +  ++
Sbjct: 129 KCRSVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYIS 188

Query: 257 LISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKS 316
           +++      +L+ GK++H++++  G Q + R+ NS++ MY KC DL S+R VF+ I  + 
Sbjct: 189 ILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRD 248

Query: 317 LVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLH 376
           +VS+  ++  Y Q     E +  F +M  E     D +T +++L A    + L+   ++H
Sbjct: 249 VVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPP-DKVTYINLLDAFTTPSMLDEGKRIH 307

Query: 377 GIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHG 436
            +A   G      V   L + + +CG+V  A    E     RDVV +N +I     +GH 
Sbjct: 308 KLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFAD-RDVVVYNALIAALAQHGHY 366

Query: 437 ETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGC 496
           E A   Y++M   G V + +TYLS+LNAC  +     G +I + + E       Q     
Sbjct: 367 EEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIG-NS 425

Query: 497 VVDLLARAGCLSDASGLAGKLLEGMGPN----IWRALLSGCVLHVGRFQDAEALRSGSQK 552
           ++ + AR G L  A  L   +     P      W A+++G   +  R    EA++   Q 
Sbjct: 426 LISMYARCGDLPRARELFNTM-----PKRDLISWNAIIAG---YARREDRGEAMKLYKQM 477

Query: 553 KGIIKIPG-ISFLN 565
           +     PG ++FL+
Sbjct: 478 QSEGVKPGRVTFLH 491


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  272 bits (696), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 174/625 (27%), Positives = 294/625 (47%), Gaps = 63/625 (10%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  S L+  Y K G+I+ A  +F  +PE+N V+W+++++GY+  G     +K F  M
Sbjct: 246 LDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSM 305

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
           M   +  N FT+  VL   A  +NL+  + IH L++K G E +                 
Sbjct: 306 MELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLA 365

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +F+ +K P +V  +A++         ++++ LF+  R    +PN  T+ +++   
Sbjct: 366 IDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAA 425

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMY---SCLMDLDAAIQIFREMECKDVI 217
              G+    + IH    K G   DV+V+N+++ MY    C+ D     +++  M  +D+I
Sbjct: 426 TNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHD---GTKLYESMVDRDLI 482

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           SW   +    D       L IF  M +   I +    ++++   + L D+  G+Q+HA +
Sbjct: 483 SWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHI 542

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           +   L     +  ++I MY+KC  L+ +   FN+++ + L +WT II+ Y Q     +AL
Sbjct: 543 IKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKAL 602

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
           N F +M+QE     +  TL   L+    LA+LE   QLH + F++G      V + L+  
Sbjct: 603 NYFRQMQQEGVKP-NEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDM 661

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           Y+KCG ++ A  +FE +   RD ++WNTII GY  NG G  AL  +  M + G  PD  T
Sbjct: 662 YAKCGCMEEAEALFEAL-IRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVT 720

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL 517
           +  IL+AC H GL  +G   FN M  +  + P+ +H  C+VD+L R G   +      K+
Sbjct: 721 FTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKM 780

Query: 518 LEGMGPNIWRALLSGCVLH---------------------------------VGRFQDAE 544
                  IW  +L    +H                                  GR+ D +
Sbjct: 781 QLSQNALIWETVLGASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVK 840

Query: 545 ALRSGSQKKGIIKIPGISFLNSTSR 569
            +RS    KG+ K PG S++ +  +
Sbjct: 841 RVRSLMSSKGVKKEPGCSWVEANGQ 865



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 143/585 (24%), Positives = 254/585 (43%), Gaps = 49/585 (8%)

Query: 30  EIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLEL 89
           ++P+++VVSW+ +I G    GF   S+  F  M   G++PN FT+   L A +    L+L
Sbjct: 172 KMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDL 231

Query: 90  ARSIHGLMVKFGLESDLFE----------------------GLKNPYLVSCNAIVAGFIN 127
            + +H    K GL  DLF                       G+     V+ N ++ G+  
Sbjct: 232 GKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQ 291

Query: 128 NKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSV 187
                  + LF       +  N  T+ TV++GC    +    ++IH L IK G   +  +
Sbjct: 292 RGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFI 351

Query: 188 NNSVLDMYS-CLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSR 246
              ++DMYS C + +D AI +F+ ++  D++ W+ ++        + +++K+F  MR   
Sbjct: 352 GCGLVDMYSKCGLAID-AIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGD 410

Query: 247 IICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSR 306
            + +   + +L+S     G+L+ G+ +HA V   G ++++ +SN+++ MY K G +    
Sbjct: 411 TLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGT 470

Query: 307 SVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGEL 366
            ++  + ++ L+SW A +SG    G     L  F  M +E     +  T +SIL +   L
Sbjct: 471 KLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIP-NMYTFISILGSCSCL 529

Query: 367 AALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTI 426
             +    Q+H    +        V   LI  Y+KC  ++ A + F  +  +RD+ +W  I
Sbjct: 530 FDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLS-VRDLFTWTVI 588

Query: 427 IYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENK 486
           I  Y     GE AL  + +M + G  P+  T    L+ C        G  + + + +   
Sbjct: 589 ITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGH 648

Query: 487 VKPSQEHYG-CVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEA 545
           V  S    G  +VD+ A+ GC+ +A  L   L+       W  ++ G   +    +   A
Sbjct: 649 V--SDMFVGSALVDMYAKCGCMEEAEALFEALIR-RDTIAWNTIICGYAQNGQGNKALTA 705

Query: 546 LR------------------SGSQKKGIIKIPGISFLNSTSRDFG 572
            R                  S    +G+++  G    NS  RDFG
Sbjct: 706 FRMMLDEGISPDGVTFTGILSACSHQGLVE-EGKEHFNSMYRDFG 749



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 127/498 (25%), Positives = 236/498 (47%), Gaps = 37/498 (7%)

Query: 42  VIHG--YSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK 99
           V+H   Y  N  H+K+  A  + +             +L   A  ++L +A++IHGL+VK
Sbjct: 81  VVHNFPYRFNFEHQKTEDAKGNQVCWSSKKKLKYYSSMLRECASKRSLGVAKAIHGLIVK 140

Query: 100 --FGLESDLFEGLKNPY--------------------LVSCNAIVAGFINNKLFQQAVLL 137
                +S L+  L N Y                    +VS  A++ G +       ++ L
Sbjct: 141 DVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYL 200

Query: 138 FNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSC 197
           F   +  G++PN  T+ T ++ C    +  L + +H    KLGL+LD+ V ++++D+Y+ 
Sbjct: 201 FQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAK 260

Query: 198 LMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNL 257
             +++ A ++F  M  ++ ++W  ++  +         LK+F  M +  + C+   L  +
Sbjct: 261 CGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTV 320

Query: 258 ISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSL 317
           +   A   +LK+G+ +H+ ++  G +    +   ++ MYSKCG    +  VF  I +  +
Sbjct: 321 LKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDI 380

Query: 318 VSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHG 377
           V W+A+I+   Q G + E++  F  MR   T   +  T+ S+L+A+     L+    +H 
Sbjct: 381 VVWSALITCLDQQGQSEESIKLFHLMRLGDTLP-NQYTICSLLSAATNTGNLQYGQSIHA 439

Query: 378 IAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGE 437
             ++ GF    +V N L++ Y K G V     ++E M   RD++SWN  + G    G  +
Sbjct: 440 CVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESM-VDRDLISWNAYLSGLHDCGMYD 498

Query: 438 TALALYHKMTETGEVPDSSTYLSILNACG-----HAGLTNDGLVIFNQMIEENKVKPSQE 492
             L +++ M E G +P+  T++SIL +C      H G      +I NQ+ + N V  +  
Sbjct: 499 RPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTA-- 556

Query: 493 HYGCVVDLLARAGCLSDA 510
               ++D+ A+   L DA
Sbjct: 557 ----LIDMYAKCMYLEDA 570


>gi|357114751|ref|XP_003559158.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 695

 Score =  272 bits (696), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 173/557 (31%), Positives = 279/557 (50%), Gaps = 40/557 (7%)

Query: 10  KLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLP 69
           K L    KSG + +A +LFD +P KN+V+W+  + G + NG  E +M AF+ M+ SG+ P
Sbjct: 32  KRLDRLMKSGSLGDALDLFDRMPRKNIVAWTSAVSGLTRNGRPEAAMAAFADMVASGVAP 91

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LF 107
           N F     L A A    L     +H L V+ G   D                      +F
Sbjct: 92  NDFAFNAALAACADASALRAGEQVHSLAVRAGFAGDSWVGSSLVELYSRCGDLGAAKGVF 151

Query: 108 EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRA 167
           + +++P +V   ++V+ F  +  F+ AV   +     G+ PN  TM +++  C       
Sbjct: 152 DRMESPDVVGYTSLVSAFCRSGEFELAVDTLHQMLRQGVEPNEHTMASILGSCCPF---V 208

Query: 168 LCELIHGLTIK-LGL-ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
           L E +H   IK +GL    +  +++++D YS   + D A  +F  + CK+V++W  MM L
Sbjct: 209 LGEQVHAYMIKAMGLHSQSMYASSALIDFYSRNSEFDMAKAVFNNLHCKNVVTWCSMMQL 268

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAIL---GDLKRGKQLHAQVVLGGL 282
            +      DAL++F +M     I + V   N  + +  L   G +  G+QLH+  +   L
Sbjct: 269 HIRDGRPEDALQVFDDM-----ISEGVVEPNEFAFSIALGACGSIALGRQLHSSAIKRNL 323

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
            S+LR+SN++++MY +   +    +V   I    +VSWT  IS   QNG + +A+   + 
Sbjct: 324 TSDLRVSNALLSMYGRICHVQELEAVLKDIENPDIVSWTTAISANFQNGFSEKAI-ALLS 382

Query: 343 MRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
           M   +    +     S L++  +LA L+   Q H +A + G        N LI+ YSKCG
Sbjct: 383 MLHSRGLMPNDYAFSSALSSCADLALLDQGRQFHCLALKLGCDLKICTGNALINLYSKCG 442

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTE-TGEVPDSSTYLSI 461
            +  A + F+ M   RDV SWN++I+GY  +G    AL ++ +M    G  PD S++L +
Sbjct: 443 QIAPAKLAFDVMDH-RDVTSWNSLIHGYAQHGDASMALQVFGEMRSIRGTEPDESSFLGV 501

Query: 462 LNACGHAGLTNDGLVIFNQMIEENK--VKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519
           L AC HAG+ N+G+ +F  +   ++    PS  HY CVVD++ R+G   DA  L  ++  
Sbjct: 502 LAACNHAGMVNEGVALFRAIASHSQHGATPSPSHYACVVDMMGRSGRFDDALRLVEEMPF 561

Query: 520 GMGPNIWRALLSGCVLH 536
             G  IW+ LL+ C LH
Sbjct: 562 RPGALIWKTLLASCRLH 578



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 117/514 (22%), Positives = 222/514 (43%), Gaps = 43/514 (8%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  S L+  Y + G +  A+ +FD +   +VV ++ ++  +  +G  E ++     M+
Sbjct: 127 DSWVGSSLVELYSRCGDLGAAKGVFDRMESPDVVGYTSLVSAFCRSGEFELAVDTLHQML 186

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK------------------------ 99
             G+ PN  TM  +L +        L   +H  M+K                        
Sbjct: 187 RQGVEPNEHTMASILGSCCPFV---LGEQVHAYMIKAMGLHSQSMYASSALIDFYSRNSE 243

Query: 100 FGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLV-PNAVTMLTVIR 158
           F +   +F  L    +V+  +++   I +   + A+ +F+     G+V PN       + 
Sbjct: 244 FDMAKAVFNNLHCKNVVTWCSMMQLHIRDGRPEDALQVFDDMISEGVVEPNEFAFSIALG 303

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C   GS AL   +H   IK  L  D+ V+N++L MY  +  +     + +++E  D++S
Sbjct: 304 AC---GSIALGRQLHSSAIKRNLTSDLRVSNALLSMYGRICHVQELEAVLKDIENPDIVS 360

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           WT  +       ++  A+ +   +    ++ +  A  + +S  A L  L +G+Q H   +
Sbjct: 361 WTTAISANFQNGFSEKAIALLSMLHSRGLMPNDYAFSSALSSCADLALLDQGRQFHCLAL 420

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
             G   ++   N++I +YSKCG +  ++  F+ +  + + SW ++I GY Q+G A  AL 
Sbjct: 421 KLGCDLKICTGNALINLYSKCGQIAPAKLAFDVMDHRDVTSWNSLIHGYAQHGDASMALQ 480

Query: 339 QFIKMRQEKTDSVDSITLVSILTAS------GELAALEICLQLHGIAFEAGFPRYRSVQN 392
            F +MR  +    D  + + +L A        E  AL   +  H        P + +   
Sbjct: 481 VFGEMRSIRGTEPDESSFLGVLAACNHAGMVNEGVALFRAIASHSQHGATPSPSHYA--- 537

Query: 393 CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGH---GETALALYHKMTET 449
           C++    + G  D A  + EEM F    + W T++    ++G+   GE A     +++E 
Sbjct: 538 CVVDMMGRSGRFDDALRLVEEMPFRPGALIWKTLLASCRLHGNLETGELAAERLMELSEG 597

Query: 450 GEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIE 483
           GE  DS++Y+ +       G   D   +  +M E
Sbjct: 598 GEDRDSASYVLMSGIHAMRGEWRDAYRVRRRMDE 631


>gi|15218216|ref|NP_173004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75191104|sp|Q9M9E2.1|PPR45_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g15510, chloroplastic; Flags: Precursor
 gi|8072389|gb|AAF71977.1|AC013453_2 Hypothetical protein [Arabidopsis thaliana]
 gi|300825685|gb|ADK35876.1| chloroplast vanilla cream 1 [Arabidopsis thaliana]
 gi|332191210|gb|AEE29331.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 866

 Score =  272 bits (696), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 169/551 (30%), Positives = 290/551 (52%), Gaps = 32/551 (5%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM-LSGLLP 69
            L+ + + G + +A  +F ++ E+N+ SW++++ GY+  G+ +++M  +  M+ + G+ P
Sbjct: 135 FLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKP 194

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LF 107
           + +T   VL    G+ +L   + +H  +V++G E D                      LF
Sbjct: 195 DVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLF 254

Query: 108 EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRA 167
           + +    ++S NA+++G+  N +  + + LF   RG  + P+ +T+ +VI  C  LG R 
Sbjct: 255 DRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRR 314

Query: 168 LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
           L   IH   I  G  +D+SV NS+  MY        A ++F  ME KD++SWT M+  + 
Sbjct: 315 LGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGY- 373

Query: 228 DFEYAGD-ALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
           ++ +  D A+  +R M +  +  D + +  ++S  A LGDL  G +LH   +   L S +
Sbjct: 374 EYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYV 433

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            ++N++I MYSKC  +D +  +F+ I  K+++SWT+II+G   N    EAL   I +RQ 
Sbjct: 434 IVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEAL---IFLRQM 490

Query: 347 K-TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
           K T   ++ITL + L A   + AL    ++H      G      + N L+  Y +CG ++
Sbjct: 491 KMTLQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMN 550

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            A+  F      +DV SWN ++ GY   G G   + L+ +M ++   PD  T++S+L  C
Sbjct: 551 TAWSQFNSQK--KDVTSWNILLTGYSERGQGSMVVELFDRMVKSRVRPDEITFISLLCGC 608

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI 525
             + +   GL+ F++M E+  V P+ +HY CVVDLL RAG L +A     K+     P +
Sbjct: 609 SKSQMVRQGLMYFSKM-EDYGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPAV 667

Query: 526 WRALLSGCVLH 536
           W ALL+ C +H
Sbjct: 668 WGALLNACRIH 678



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 119/430 (27%), Positives = 209/430 (48%), Gaps = 25/430 (5%)

Query: 43  IHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVL-----------------VAAAGLQ 85
           +HG   NG  E++MK  + M    +  +    V ++                 +A + + 
Sbjct: 66  LHGLCANGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMS 125

Query: 86  NL--ELARSIHGLMVKFGLESD---LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFN- 139
           +L  EL  +   + V+FG   D   +F  +    L S N +V G+     F +A+ L++ 
Sbjct: 126 SLGVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHR 185

Query: 140 FFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLM 199
                G+ P+  T   V+R C  +   A  + +H   ++ G  LD+ V N+++ MY    
Sbjct: 186 MLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCG 245

Query: 200 DLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLIS 259
           D+ +A  +F  M  +D+ISW  M+  + +     + L++F  MR   +  D + L ++IS
Sbjct: 246 DVKSARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVIS 305

Query: 260 VNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVS 319
              +LGD + G+ +HA V+  G   ++ + NS+  MY   G    +  +F+++  K +VS
Sbjct: 306 ACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVS 365

Query: 320 WTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIA 379
           WT +ISGY  N    +A++ +  M Q+     D IT+ ++L+A   L  L+  ++LH +A
Sbjct: 366 WTTMISGYEYNFLPDKAIDTYRMMDQDSVKP-DEITVAAVLSACATLGDLDTGVELHKLA 424

Query: 380 FEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETA 439
            +A    Y  V N LI+ YSKC  +D A  +F  +   ++V+SW +II G  +N     A
Sbjct: 425 IKARLISYVIVANNLINMYSKCKCIDKALDIFHNIP-RKNVISWTSIIAGLRLNNRCFEA 483

Query: 440 LALYHKMTET 449
           L    +M  T
Sbjct: 484 LIFLRQMKMT 493



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 130/531 (24%), Positives = 238/531 (44%), Gaps = 52/531 (9%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           ID  N+  L++ Y K G +K A  LFD +P ++++SW+ +I GY  NG   + ++ F  M
Sbjct: 231 IDVVNA--LITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAM 288

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
               + P+  T+  V+ A   L +  L R IH  ++  G   D                 
Sbjct: 289 RGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSW 348

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                LF  ++   +VS   +++G+  N L  +A+  +       + P+ +T+  V+  C
Sbjct: 349 REAEKLFSRMERKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSAC 408

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             LG       +H L IK  LI  V V N++++MYS    +D A+ IF  +  K+VISWT
Sbjct: 409 ATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWT 468

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++          +AL   R+M+ + +  + + L   ++  A +G L  GK++HA V+  
Sbjct: 469 SIIAGLRLNNRCFEALIFLRQMKMT-LQPNAITLTAALAACARIGALMCGKEIHAHVLRT 527

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           G+  +  L N+++ MY +CG ++++ S FN   +K + SW  +++GY + G     +  F
Sbjct: 528 GVGLDDFLPNALLDMYVRCGRMNTAWSQFNS-QKKDVTSWNILLTGYSERGQGSMVVELF 586

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN-----CLI 395
            +M + +    D IT +S+L    +   +       G+ + +    Y    N     C++
Sbjct: 587 DRMVKSRVRP-DEITFISLLCGCSKSQMVR-----QGLMYFSKMEDYGVTPNLKHYACVV 640

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
               + G +  A+   ++M    D   W  ++           A  ++HK+ + GE+   
Sbjct: 641 DLLGRAGELQEAHKFIQKMPVTPDPAVWGALL----------NACRIHHKI-DLGELSAQ 689

Query: 456 STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGC 506
             +     + G+  L  +      +  E  KV+   +  G  VD    AGC
Sbjct: 690 HIFELDKKSVGYYILLCNLYADCGKWREVAKVRRMMKENGLTVD----AGC 736


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  272 bits (695), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 168/557 (30%), Positives = 291/557 (52%), Gaps = 25/557 (4%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  + LL+ Y   G +++A  LFDE+P  N VS+  +  G+S +   +++ +    +
Sbjct: 36  LDLFAQNILLNTYVHFGFLEDASKLFDEMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRL 95

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
              G   N F    +L     +   +   S+H  + K G ++D                 
Sbjct: 96  FREGYEVNQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNV 155

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +F+G+    +VS   +VA +  N   + ++LLF   R  G  PN  T+   ++ C
Sbjct: 156 DAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSC 215

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             L +  + + +HG  +K+    D+ V  ++L++Y+   ++  A Q F EM   D+I W+
Sbjct: 216 NGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWS 275

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIIC-DTVALLNLISVNAILGDLKRGKQLHAQVVL 279
            M+  +   + + +AL++F  MR+S ++  +     +++   A L  L  G Q+H+ V+ 
Sbjct: 276 LMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLK 335

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            GL S + +SN+++ +Y+KCG++++S  +F   TEK+ V+W  II GYVQ G   +ALN 
Sbjct: 336 VGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNL 395

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           F  M        + +T  S+L AS  L ALE   Q+H +  +  + +   V N LI  Y+
Sbjct: 396 FSNMLGLDIQPTE-VTYSSVLRASASLVALEPGRQIHSLTIKTMYNKDSVVANSLIDMYA 454

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           KCG +D A + F++M   +D VSWN +I GY ++G G  AL L+  M ++   P+  T++
Sbjct: 455 KCGRIDDARLTFDKMD-KQDEVSWNALICGYSIHGLGMEALNLFDMMQQSNSKPNKLTFV 513

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519
            +L+AC +AGL + G   F  M+++  ++P  EHY C+V LL R+G   +A  L G++  
Sbjct: 514 GVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEHYTCMVWLLGRSGQFDEAVKLIGEIPF 573

Query: 520 GMGPNIWRALLSGCVLH 536
                +WRALL  CV+H
Sbjct: 574 QPSVMVWRALLGACVIH 590



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 97/200 (48%), Gaps = 2/200 (1%)

Query: 266 DLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIIS 325
           D   GK LH  ++  G   +L   N ++  Y   G L+ +  +F+++   + VS+  +  
Sbjct: 18  DPNAGKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLFDEMPLTNTVSFVTLAQ 77

Query: 326 GYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFP 385
           G+ ++   + A    +++ +E  + V+     ++L     +   + CL +H   ++ G  
Sbjct: 78  GFSRSHQFQRARRLLLRLFREGYE-VNQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQ 136

Query: 386 RYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHK 445
               V   LI +YS CGNVD A  VF+ + F +D+VSW  ++  Y  N   E +L L+ +
Sbjct: 137 ADAFVGTALIDAYSVCGNVDAARQVFDGIYF-KDMVSWTGMVACYAENYCHEDSLLLFCQ 195

Query: 446 MTETGEVPDSSTYLSILNAC 465
           M   G  P++ T  + L +C
Sbjct: 196 MRIMGYRPNNFTISAALKSC 215


>gi|255561624|ref|XP_002521822.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539035|gb|EEF40632.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 793

 Score =  271 bits (694), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 177/556 (31%), Positives = 288/556 (51%), Gaps = 41/556 (7%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTM 74
           Y K G++  A+ LFD + E++V+S++I+I GY   GF+ K++  FS   ++ L  + F+ 
Sbjct: 54  YSKWGEMGNAQKLFDRMSERSVISYNILISGYGGMGFYHKAIGLFSEARMACLKLDKFSY 113

Query: 75  VGVLVAAAGLQNLELARSIHGLMVKFGLESDLF------------EGLKNPYL------- 115
            GVL A   +++  L + IHGL +  GL   +F            E + +  L       
Sbjct: 114 AGVLSACGQIKDFALGKVIHGLAIVCGLGQQVFLTNLLIDMYCKCERIDHARLLFESSDE 173

Query: 116 ---VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC-------VALGS 165
              VS N+++ G+     +++ + L      +GL  NA T+ + ++ C       V+ G 
Sbjct: 174 LDNVSWNSLITGYARVGAYEEMLKLLVKMHHTGLRLNAFTLGSALKSCYLNLNNMVSYG- 232

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
               + +HG T+K GL LD+ V  ++LDMY+    L  AIQ+FR    ++V+ +  M+  
Sbjct: 233 ----KTLHGYTVKQGLDLDIVVGTALLDMYAKTGYLGDAIQLFRTSPNQNVVMYNAMIAG 288

Query: 226 FV-----DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
           F+     D E A +ALK+F +M++  I        ++I +   +   + GKQ+HA +   
Sbjct: 289 FIQTEDIDKECAYEALKLFSQMQRQGIKPSDFTFSSIIKICNHIEAFEYGKQIHAHICKH 348

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
            +QS+  + +++I +YS  G  +     FN   +  +VSWT +I+GY QNG    AL  F
Sbjct: 349 NIQSDEFIGSTLIELYSLLGSTEDQLKCFNSTPKLDIVSWTTMIAGYAQNGQFESALALF 408

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            ++        D   + ++L+A  ++AA     Q+HG A + G      VQN  IS Y+K
Sbjct: 409 YELLASGKKP-DEFIITTMLSACADVAAERSGEQVHGYAVKTGIGTLAIVQNSQISMYAK 467

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
            GN+D A I FEE+    DVVSW+ +I     +GH + A+ L+  M   G  P+  T+L 
Sbjct: 468 SGNLDSAKITFEEIKN-PDVVSWSVMICSNAQHGHAKDAINLFELMKSYGIHPNQITFLG 526

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           +L AC H GL  +GL  +  M ++  +K + +H  C+VDLL+RAG L DA         G
Sbjct: 527 VLTACSHGGLVEEGLRYYESMKKDYDMKINVKHCTCIVDLLSRAGRLLDAKNFILNSGFG 586

Query: 521 MGPNIWRALLSGCVLH 536
             P +WR LLSGC ++
Sbjct: 587 DHPVMWRTLLSGCRIY 602



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 130/501 (25%), Positives = 227/501 (45%), Gaps = 54/501 (10%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+  Y K  +I  A  LF+   E + VSW+ +I GY+  G +E+ +K    M  +GL  N
Sbjct: 151 LIDMYCKCERIDHARLLFESSDELDNVSWNSLITGYARVGAYEEMLKLLVKMHHTGLRLN 210

Query: 71  SFTMVGVLVAAA-GLQNL-ELARSIHGLMVKFGLESD----------------------L 106
           +FT+   L +    L N+    +++HG  VK GL+ D                      L
Sbjct: 211 AFTLGSALKSCYLNLNNMVSYGKTLHGYTVKQGLDLDIVVGTALLDMYAKTGYLGDAIQL 270

Query: 107 FEGLKNPYLVSCNAIVAGFI-----NNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
           F    N  +V  NA++AGFI     + +   +A+ LF+  +  G+ P+  T  ++I+ C 
Sbjct: 271 FRTSPNQNVVMYNAMIAGFIQTEDIDKECAYEALKLFSQMQRQGIKPSDFTFSSIIKICN 330

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            + +    + IH    K  +  D  + ++++++YS L   +  ++ F      D++SWT 
Sbjct: 331 HIEAFEYGKQIHAHICKHNIQSDEFIGSTLIELYSLLGSTEDQLKCFNSTPKLDIVSWTT 390

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+  +        AL +F E+  S    D   +  ++S  A +   + G+Q+H   V  G
Sbjct: 391 MIAGYAQNGQFESALALFYELLASGKKPDEFIITTMLSACADVAAERSGEQVHGYAVKTG 450

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           + +   + NS I+MY+K G+LDS++  F +I    +VSW+ +I    Q+G A++A+N F 
Sbjct: 451 IGTLAIVQNSQISMYAKSGNLDSAKITFEEIKNPDVVSWSVMICSNAQHGHAKDAINLFE 510

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ---------- 391
            M+       + IT + +LTA             HG   E G   Y S++          
Sbjct: 511 LMKSYGIHP-NQITFLGVLTACS-----------HGGLVEEGLRYYESMKKDYDMKINVK 558

Query: 392 --NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
              C++   S+ G +  A       GF    V W T++ G  +     T   +  K+ E 
Sbjct: 559 HCTCIVDLLSRAGRLLDAKNFILNSGFGDHPVMWRTLLSGCRIYKDIVTGKHVAEKLIEL 618

Query: 450 GEVPDSSTYLSILNACGHAGL 470
            +  +SS+Y+ + N    AG+
Sbjct: 619 -DPQESSSYVLLYNIYTDAGI 638



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 134/265 (50%), Gaps = 9/265 (3%)

Query: 250 DTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVF 309
           D+VA   L+  ++  G    GK  HA ++       L L N+ + +YSK G++ +++ +F
Sbjct: 8   DSVAYTKLVQFSSKSGSSIHGKLAHAHMIKTAFNPCLFLLNNFLNLYSKWGEMGNAQKLF 67

Query: 310 NQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAAL 369
           ++++E+S++S+  +ISGY   G   +A+  F + R      +D  +   +L+A G++   
Sbjct: 68  DRMSERSVISYNILISGYGGMGFYHKAIGLFSEARMACL-KLDKFSYAGVLSACGQIKDF 126

Query: 370 EICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYG 429
            +   +HG+A   G  +   + N LI  Y KC  +D A ++FE    L D VSWN++I G
Sbjct: 127 ALGKVIHGLAIVCGLGQQVFLTNLLIDMYCKCERIDHARLLFESSDEL-DNVSWNSLITG 185

Query: 430 YGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKP 489
           Y   G  E  L L  KM  TG   ++ T  S L +C +  L N  +V + + +    VK 
Sbjct: 186 YARVGAYEEMLKLLVKMHHTGLRLNAFTLGSALKSC-YLNLNN--MVSYGKTLHGYTVKQ 242

Query: 490 SQEHYGCV----VDLLARAGCLSDA 510
             +    V    +D+ A+ G L DA
Sbjct: 243 GLDLDIVVGTALLDMYAKTGYLGDA 267



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 145/338 (42%), Gaps = 27/338 (7%)

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
           GS    +L H   IK      + + N+ L++YS   ++  A ++F  M  + VIS+  ++
Sbjct: 23  GSSIHGKLAHAHMIKTAFNPCLFLLNNFLNLYSKWGEMGNAQKLFDRMSERSVISYNILI 82

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
             +    +   A+ +F E R + +  D  +   ++S    + D   GK +H   ++ GL 
Sbjct: 83  SGYGGMGFYHKAIGLFSEARMACLKLDKFSYAGVLSACGQIKDFALGKVIHGLAIVCGLG 142

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
            ++ L+N +I MY KC  +D +R +F    E   VSW ++I+GY + G   E L   +KM
Sbjct: 143 QQVFLTNLLIDMYCKCERIDHARLLFESSDELDNVSWNSLITGYARVGAYEEMLKLLVKM 202

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICL-----------QLHGIAFEAGFPRYRSVQN 392
                  +++ TL S         AL+ C             LHG   + G      V  
Sbjct: 203 HHTGL-RLNAFTLGS---------ALKSCYLNLNNMVSYGKTLHGYTVKQGLDLDIVVGT 252

Query: 393 CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGH-----GETALALYHKMT 447
            L+  Y+K G +  A  +F      ++VV +N +I G+             AL L+ +M 
Sbjct: 253 ALLDMYAKTGYLGDAIQLFRTSPN-QNVVMYNAMIAGFIQTEDIDKECAYEALKLFSQMQ 311

Query: 448 ETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEEN 485
             G  P   T+ SI+  C H      G  I   + + N
Sbjct: 312 RQGIKPSDFTFSSIIKICNHIEAFEYGKQIHAHICKHN 349


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  271 bits (694), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 176/617 (28%), Positives = 297/617 (48%), Gaps = 58/617 (9%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           DP   + LLS Y K G +  A  +F  I  ++VVS++ ++  Y+   + ++ +  F  M 
Sbjct: 162 DPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMS 221

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------- 106
             G+ P+  T + +L A      L+  + IH L V+ GL SD+                 
Sbjct: 222 SEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVD 281

Query: 107 -----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                F+G+ +  +V  NA++A    +    +A   +   R  G+  N  T L+++  C 
Sbjct: 282 SAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACS 341

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
              +    +LIH    + G   DV + N+++ MY+   DL  A ++F  M  +D+ISW  
Sbjct: 342 TSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNA 401

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++  +   E  G+A++++++M+   +    V  L+L+S  A       GK +H  ++  G
Sbjct: 402 IIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSG 461

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           ++S   L+N+++ MY +CG L  +++VF     + ++SW ++I+G+ Q+G    A   F 
Sbjct: 462 IKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQ 521

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +M+ E+ +  D+IT  S+L+      ALE+  Q+HG   E+G     ++ N LI+ Y +C
Sbjct: 522 EMQNEELEP-DNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRC 580

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG-EVPDSSTYLS 460
           G++  A  VF  +   RDV+SW  +I G    G    A+ L+ +M   G   PD ST+ S
Sbjct: 581 GSLQDARNVFHSLQH-RDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPPDGSTFTS 639

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           IL+AC HAGL  +G  IF+ M  E  V P+ EHYGC+V LL RA    +A  L  ++   
Sbjct: 640 ILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFP 699

Query: 521 MGPNIWRALLSGCVLH---------------------------------VGRFQDAEALR 547
               +W  LL  C +H                                  GR+ D   +R
Sbjct: 700 PDAAVWETLLGACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIR 759

Query: 548 SGSQKKGIIKIPGISFL 564
              + +GI K PG S++
Sbjct: 760 RVMEGRGIRKEPGRSWI 776



 Score =  218 bits (556), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 140/553 (25%), Positives = 268/553 (48%), Gaps = 26/553 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + S+ L++ Y K   + +A  +F E+P ++V+SW+ +I  Y+  GF +K+ + F  M 
Sbjct: 61  DIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQ 120

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
            +G +PN  T + +L A      LE  + IH  ++K G + D                  
Sbjct: 121 NAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLP 180

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +F G+    +VS N ++  +      ++ + LF      G+ P+ VT + ++    
Sbjct: 181 RARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFT 240

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
                   + IH LT++ GL  D+ V  +++ M     D+D+A Q F+ +  +DV+ +  
Sbjct: 241 TPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNA 300

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++       +  +A + +  MR   +  +    L++++  +    L+ GK +H+ +   G
Sbjct: 301 LIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDG 360

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
             S++++ N++I+MY++CGDL  +R +F  + ++ L+SW AII+GY +     EA+  + 
Sbjct: 361 HSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYK 420

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +M+ E       +T + +L+A    +A      +H     +G      + N L++ Y +C
Sbjct: 421 QMQSEGVKP-GRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRC 479

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G++  A  VFE     RDV+SWN++I G+  +G  ETA  L+ +M      PD+ T+ S+
Sbjct: 480 GSLMEAQNVFEGTQ-ARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASV 538

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L+ C +      G  I  + I E+ ++        ++++  R G L DA  +    L+  
Sbjct: 539 LSGCKNPEALELGKQIHGR-ITESGLQLDVNLGNALINMYIRCGSLQDARNVFHS-LQHR 596

Query: 522 GPNIWRALLSGCV 534
               W A++ GC 
Sbjct: 597 DVMSWTAMIGGCA 609



 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 138/499 (27%), Positives = 237/499 (47%), Gaps = 33/499 (6%)

Query: 73  TMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF----------------------EGL 110
           T V +L      + L  A+ IH  MV+ G+  D+F                      + +
Sbjct: 29  TYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVFKEM 88

Query: 111 KNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCE 170
               ++S N++++ +      ++A  LF   + +G +PN +T ++++  C +       +
Sbjct: 89  PRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGK 148

Query: 171 LIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFE 230
            IH   IK G   D  V NS+L MY    DL  A Q+F  +  +DV+S+  M+GL+    
Sbjct: 149 KIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKA 208

Query: 231 YAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSN 290
           Y  + L +F +M    I  D V  +NL+        L  GK++H   V  GL S++R+  
Sbjct: 209 YVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGT 268

Query: 291 SIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDS 350
           +++ M  +CGD+DS++  F  I ++ +V + A+I+   Q+G   EA  Q+ +MR +   +
Sbjct: 269 ALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGV-A 327

Query: 351 VDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIV 410
           ++  T +SIL A     ALE    +H    E G      + N LIS Y++CG++  A  +
Sbjct: 328 LNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKAREL 387

Query: 411 FEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGL 470
           F  M   RD++SWN II GY        A+ LY +M   G  P   T+L +L+AC ++  
Sbjct: 388 FYTMP-KRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSA 446

Query: 471 TNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN---IWR 527
             DG +I   ++    +K +      ++++  R G L +A      + EG        W 
Sbjct: 447 YADGKMIHEDILRSG-IKSNGHLANALMNMYRRCGSLMEAQ----NVFEGTQARDVISWN 501

Query: 528 ALLSGCVLHVGRFQDAEAL 546
           ++++G   H G ++ A  L
Sbjct: 502 SMIAGHAQH-GSYETAYKL 519



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 70/139 (50%), Gaps = 1/139 (0%)

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
           Q +    D  T V++L        L    ++H    EAG      + N LI+ Y KC +V
Sbjct: 19  QPRPTETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSV 78

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
             A+ VF+EM   RDV+SWN++I  Y   G  + A  L+ +M   G +P+  TY+SIL A
Sbjct: 79  LDAHQVFKEMP-RRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTA 137

Query: 465 CGHAGLTNDGLVIFNQMIE 483
           C       +G  I +Q+I+
Sbjct: 138 CYSPAELENGKKIHSQIIK 156



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 60/274 (21%), Positives = 116/274 (42%), Gaps = 28/274 (10%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLP- 69
           L++ Y + G +++A N+F  +  ++V+SW+ +I G +  G   K+++ F  M   G  P 
Sbjct: 573 LINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPP 632

Query: 70  --NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFIN 127
             ++FT +      AGL        + G  +   +ES+   G+  P +     +V     
Sbjct: 633 DGSTFTSILSACNHAGL-------VLEGYQIFSSMESEY--GVL-PTIEHYGCLVGLLGR 682

Query: 128 NKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSV 187
            + FQ+A  L N        P+A    T++  C   G+ AL E      +KL    + +V
Sbjct: 683 ARRFQEAETLINQM---PFPPDAAVWETLLGACRIHGNIALAEHAANNALKLN-ARNPAV 738

Query: 188 NNSVLDMYSCLMDLDAAIQIFREMECKDV-----ISWTRMMGLFVDFEYAG----DALKI 238
              + ++Y+     D   +I R ME + +      SW  +  +  +F  A     +  +I
Sbjct: 739 YILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEI 798

Query: 239 FREMRKSRIICDTVALLNLISVNAILGDLKRGKQ 272
           + E+++  +  +            +L DL +  Q
Sbjct: 799 YAELKRLSVEMEEAGYFP--DTQHVLHDLGKAHQ 830


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  271 bits (693), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 186/621 (29%), Positives = 302/621 (48%), Gaps = 62/621 (9%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D     + L  +   G++  A  +FD IP  +  +++ +I  YS  G    ++  +  M+
Sbjct: 33  DKKQWQQELEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSML 92

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPYL------ 115
              + PN +T   VL A + L +L   R+IH      GL +DLF    L + Y+      
Sbjct: 93  RFRVAPNKYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFG 152

Query: 116 --------------VSCNAIVAGFINNKLFQQAVL-LFNFFRGSGLVPNAVTMLTVIRGC 160
                         V+ NA++AG+ N+ ++  A+  L +     GL PNA T+++++   
Sbjct: 153 PARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLL 212

Query: 161 VALGSRALCELIHGLTIKLGLILD---VSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
              G+      IH   ++  L  +   V +  ++LDMY+    L  A ++F  M  ++ +
Sbjct: 213 AQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDV 272

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMR-KSRIICDTVALLNLISVNAILGDLKRGKQLHAQ 276
           +W+ ++G FV  +   +A  +F++M  +        ++ + + V A L DL  G QLHA 
Sbjct: 273 TWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHAL 332

Query: 277 VVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
           +   G+ ++L  SNS+++MY+K G ++ +   F++I  K  +S+ A++SG VQNG A EA
Sbjct: 333 IAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEA 392

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
              F KM+    +  D  T+VS++ A   LAAL+     HG     G     S+ N LI 
Sbjct: 393 FLVFKKMQACNMEP-DIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSICNSLID 451

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
            Y+KCG +DL+  VF++M   RDVVSWNT+I GYG++G G+ A  L+  M   G  PD  
Sbjct: 452 MYAKCGKIDLSRQVFDKMP-ARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDV 510

Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK 516
           T++ ++ AC H+GL  +G   F+ M  +  + P  EHY C+VDLLAR G L +A      
Sbjct: 511 TFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGLLDEAYQFIQS 570

Query: 517 LLEGMGPNIWRALLSGCVLH---------------------------------VGRFQDA 543
           +       +W ALL  C +H                                  GRF +A
Sbjct: 571 MPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTGNFVLLSNIFSAAGRFDEA 630

Query: 544 EALRSGSQKKGIIKIPGISFL 564
             +R   + KG  K PG S++
Sbjct: 631 AEVRIIQKVKGFKKSPGYSWI 651


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  271 bits (693), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 172/592 (29%), Positives = 281/592 (47%), Gaps = 60/592 (10%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           ID Y  + L++ Y K   +  AE +F  +  ++VV+WS +I  Y+ N    K+   F  M
Sbjct: 89  IDIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERM 148

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
             + + PN  T + +L A      LE  R IH ++   G+E+D                 
Sbjct: 149 TDANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEI 208

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +F  +    +VS  AI+     ++   +A  L+     +G+ PNAVT ++++  C
Sbjct: 209 SVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSC 268

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
               +      IH    + GL  D+ V N+++ MY     +  A +IF  M  +DVISW+
Sbjct: 269 NTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWS 328

Query: 221 RMMGLFV-----DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
            M+  +      D E   +  ++   MR+  +  + V  ++++      G L++G+Q+HA
Sbjct: 329 AMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHA 388

Query: 276 QVVLGGLQSELRLSNSI-------------------------------IAMYSKCGDLDS 304
           ++   G + +  L  +I                               ++MY KCGDL S
Sbjct: 389 ELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSS 448

Query: 305 SRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASG 364
           +  VF+++  +++VSW  +I+GY QNG   +       M+ E     D +T+++IL A G
Sbjct: 449 AEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQP-DRVTVITILEACG 507

Query: 365 ELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWN 424
            LA LE    +H  A + G      V   LI  YSKCG V  A  VF++M   RD V+WN
Sbjct: 508 ALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSN-RDTVAWN 566

Query: 425 TIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEE 484
            ++ GYG +G G  A+ L+ +M +    P+  T  ++++AC  AGL  +G  IF  M E+
Sbjct: 567 AMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQED 626

Query: 485 NKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
            K+ P ++HYGC+VDLL RAG L +A      +      ++W ALL  C  H
Sbjct: 627 FKMTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALLGACKSH 678



 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 133/537 (24%), Positives = 252/537 (46%), Gaps = 69/537 (12%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS---HMML 64
           ++ L++ Y K G+I  A  +F ++ E+NVVSW+ +I     N  H K  +AF     M+ 
Sbjct: 195 ATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQA---NAQHRKLNEAFELYEQMLQ 251

Query: 65  SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL------------------ 106
           +G+ PN+ T V +L +    + L   R IH  + + GLE+D+                  
Sbjct: 252 AGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQE 311

Query: 107 ----FEGLKNPYLVSCNAIVAGFI-----NNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
               F+ +    ++S +A++AG+      + +   +   L    R  G+ PN VT ++++
Sbjct: 312 AREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSIL 371

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
           R C A G+      IH    K+G  LD S+  ++ +MY+    +  A Q+F +M  K+V+
Sbjct: 372 RACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVV 431

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIIC---------------------------- 249
           +WT  + +++       A K+F EM    ++                             
Sbjct: 432 AWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEG 491

Query: 250 ---DTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSR 306
              D V ++ ++     L  L+RGK +HA+ V  GL+S+  ++ S+I MYSKCG +  +R
Sbjct: 492 FQPDRVTVITILEACGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEAR 551

Query: 307 SVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGEL 366
           +VF++++ +  V+W A+++GY Q+G   EA++ F +M +E+  S + ITL ++++A    
Sbjct: 552 TVFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERV-SPNEITLTAVISACSRA 610

Query: 367 AALEICLQLHGIAFE--AGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWN 424
             ++   ++  +  E     PR +    C++    + G +  A    + M    D+  W+
Sbjct: 611 GLVQEGREIFRMMQEDFKMTPR-KQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWH 669

Query: 425 TIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQM 481
            ++     + + + A    H + E  E   +S Y+++ N    AG  +D   +   M
Sbjct: 670 ALLGACKSHNNVQLAERAAHHILEL-EPSYASVYITLSNIYAQAGRWDDSTKVRRVM 725



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 126/469 (26%), Positives = 230/469 (49%), Gaps = 59/469 (12%)

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPY--------- 114
           GLL NS T   V+   A  +  E  + +H  + + G+E D++ G  L N Y         
Sbjct: 51  GLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLINFYSKFEDVASA 110

Query: 115 -----------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
                      +V+ ++++A +  N    +A   F     + + PN +T L++++ C   
Sbjct: 111 EQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNY 170

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
                   IH +   +G+  DV+V  +++ MYS   ++  A ++F +M  ++V+SWT ++
Sbjct: 171 SILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAII 230

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
                     +A +++ +M ++ I  + V  ++L++       L RG+++H+ +   GL+
Sbjct: 231 QANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLE 290

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA-REALNQFI- 341
           +++ ++N++I MY KC  +  +R +F++++++ ++SW+A+I+GY Q+G   +E++++   
Sbjct: 291 TDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQ 350

Query: 342 ---KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
              +MR+E     + +T +SIL A     ALE   Q+H    + GF   RS+Q  + + Y
Sbjct: 351 LLERMRREGVFP-NKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMY 409

Query: 399 SKCGNVDLAYIVFEEMG---------FL---------------------RDVVSWNTIIY 428
           +KCG++  A  VF +M          FL                     R+VVSWN +I 
Sbjct: 410 AKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIA 469

Query: 429 GYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH-AGLTNDGLV 476
           GY  NG       L   M   G  PD  T ++IL ACG  AGL    LV
Sbjct: 470 GYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLERGKLV 518



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 103/356 (28%), Positives = 185/356 (51%), Gaps = 7/356 (1%)

Query: 131 FQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNS 190
            ++A+ L    +  GL+ N+ T   VI  C         +++H    +LG+ +D+ + NS
Sbjct: 37  LREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNS 96

Query: 191 VLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICD 250
           +++ YS   D+ +A Q+FR M  +DV++W+ M+  +    +   A   F  M  + I  +
Sbjct: 97  LINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPN 156

Query: 251 TVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFN 310
            +  L+++        L++G+++H  V   G+++++ ++ ++I MYSKCG++  +  VF+
Sbjct: 157 RITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFH 216

Query: 311 QITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALE 370
           ++TE+++VSWTAII    Q+    EA   + +M Q    S +++T VS+L +     AL 
Sbjct: 217 KMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGI-SPNAVTFVSLLNSCNTPEALN 275

Query: 371 ICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGY 430
              ++H    E G      V N LI+ Y KC +V  A  +F+ M   RDV+SW+ +I GY
Sbjct: 276 RGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMS-KRDVISWSAMIAGY 334

Query: 431 GVNGHGET-----ALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQM 481
             +G+ +         L  +M   G  P+  T++SIL AC   G    G  I  ++
Sbjct: 335 AQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAEL 390


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  271 bits (693), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 159/558 (28%), Positives = 283/558 (50%), Gaps = 24/558 (4%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  + ++++ ++  Y KSG + EA  LFD + ++  V+W+++I GY+ N    ++   F 
Sbjct: 128 PHKNIFSTNTMIMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFI 187

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES---------------- 104
            M   G+ P+  ++  +L       ++   R +H  ++K G +S                
Sbjct: 188 EMGRHGIDPDHVSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTR 247

Query: 105 ------DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                  LF  +     V+ NA++ G+      ++A+ LF   +  G  P   T   ++ 
Sbjct: 248 SLGLAFQLFNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILT 307

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
             + L      + +HG  +K   + +V V N++LD YS    +  A ++F EM   D IS
Sbjct: 308 AGIQLDDIEFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGIS 367

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           +  ++  +       ++L++F+E++ +           L+S+ AI  +L  G+Q+H+Q +
Sbjct: 368 YNVLVTCYAWNGRVKESLELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTI 427

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
           +    SE+ + NS++ MY+KCG+   +  +F+ +  +S V WTA+IS YVQ G   + L 
Sbjct: 428 VTDAISEILVGNSLVDMYAKCGEFGEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLK 487

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
            F++M++ K  + D+ T  SI+ A   LA+L +  QLH     +G+       + L+  Y
Sbjct: 488 LFVEMQRAKIGA-DAATYASIVRACASLASLTLGKQLHSHIIGSGYISNVFSGSALVDMY 546

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
           +KCG++  A  +F+EM  +R+ VSWN +I  Y  NG G+  L L+ +M  +G  PDS + 
Sbjct: 547 AKCGSIKDALQMFQEMP-VRNSVSWNALISAYAQNGDGDCTLRLFEEMVRSGLQPDSVSL 605

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
           LSIL AC H GL  +GL  F+ M    K+ P +EHY   +D+L R G   +A  L  ++ 
Sbjct: 606 LSILCACSHCGLVEEGLQYFDSMTRIYKLVPKKEHYASTIDMLCRGGRFDEAEKLMAQMP 665

Query: 519 EGMGPNIWRALLSGCVLH 536
                 +W ++L+ C +H
Sbjct: 666 FEPDEIMWSSVLNSCGIH 683



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/392 (21%), Positives = 170/392 (43%), Gaps = 59/392 (15%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P +D  + + L++ Y  +G++KE+  LF E                              
Sbjct: 361 PEVDGISYNVLVTCYAWNGRVKESLELFKE------------------------------ 390

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMV---------------------- 98
            +  +G    +F    +L  AA   NL++ R IH   +                      
Sbjct: 391 -LQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNSLVDMYAKCG 449

Query: 99  KFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
           +FG  + +F  L     V   A+++ ++   L +  + LF   + + +  +A T  +++R
Sbjct: 450 EFGEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAATYASIVR 509

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C +L S  L + +H   I  G I +V   ++++DMY+    +  A+Q+F+EM  ++ +S
Sbjct: 510 ACASLASLTLGKQLHSHIIGSGYISNVFSGSALVDMYAKCGSIKDALQMFQEMPVRNSVS 569

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQ-LHAQV 277
           W  ++  +         L++F EM +S +  D+V+LL+++   +  G ++ G Q   +  
Sbjct: 570 WNALISAYAQNGDGDCTLRLFEEMVRSGLQPDSVSLLSILCACSHCGLVEEGLQYFDSMT 629

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISG---YVQNGCA 333
            +  L  +     S I M  + G  D +  +  Q+  E   + W+++++    +     A
Sbjct: 630 RIYKLVPKKEHYASTIDMLCRGGRFDEAEKLMAQMPFEPDEIMWSSVLNSCGIHKNQELA 689

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGE 365
           ++A NQ   M+  + D+   +T+ +I  A+GE
Sbjct: 690 KKAANQLFNMKVLR-DAAPYVTMSNIYAAAGE 720



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 103/224 (45%), Gaps = 33/224 (14%)

Query: 272 QLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSL-------------- 317
            + A ++  G       SN ++  + + GDL+ +R +F+++  K++              
Sbjct: 87  HVDASIIKTGFNPNTYRSNFLVKSFLQRGDLNGARKLFDEMPHKNIFSTNTMIMGYIKSG 146

Query: 318 -----------------VSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSIL 360
                            V+WT +I GY QN   REA   FI+M +   D  D ++L ++L
Sbjct: 147 NLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGIDP-DHVSLATLL 205

Query: 361 TASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDV 420
           +   E  ++    Q+H    + G+     V N L+ SY K  ++ LA+ +F ++   RD 
Sbjct: 206 SGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIP-ERDS 264

Query: 421 VSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           V++N ++ GY   G    A+ L+ KM E G  P   T+ +IL A
Sbjct: 265 VTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTA 308


>gi|225438557|ref|XP_002276001.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Vitis vinifera]
          Length = 825

 Score =  271 bits (693), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 175/580 (30%), Positives = 293/580 (50%), Gaps = 35/580 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + L+  Y K+G I+EA  +FD++ EK  V+W+ +I GY+  G    S++ F+ M 
Sbjct: 163 DVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMR 222

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
            + ++P+ + +  VL A + L+ LE  + IH  +++ G E D                  
Sbjct: 223 ETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVK 282

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               LF+ +    ++S   +++G++ N    +A+ LF      G  P+     +V+  C 
Sbjct: 283 AGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSC- 341

Query: 162 ALGSRALCE---LIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
             GSR   E    +H  TIK  L  D  V N ++DMY+    L  A ++F  M  ++VIS
Sbjct: 342 --GSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVIS 399

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           +  M+  +   E   +AL++F EMR        +  ++L+ V+A L  L+  KQ+H  ++
Sbjct: 400 YNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLII 459

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
             G+  +L   +++I +YSKC  +  +R VF ++ EK +V W A+  GY Q+    EAL 
Sbjct: 460 KFGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALK 519

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
            +  + Q      +  T  +++TA+  LA+L    Q H    + G      V N L+  Y
Sbjct: 520 LYSTL-QFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMY 578

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
           +KCG+++ A  +F      RDVV WN++I  +  +G  E AL ++ +M + G  P+  T+
Sbjct: 579 AKCGSIEEARKMFNS-SIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTF 637

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
           +++L+AC HAG   DGL  FN M     +KP  EHY CVV LL R+G L +A     K+ 
Sbjct: 638 VAVLSACSHAGRVEDGLNHFNSM-PGFGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMP 696

Query: 519 EGMGPNIWRALLSGCVL----HVGRFQDAEALRSGSQKKG 554
                 +WR+LLS C +     +G++    A+ +  +  G
Sbjct: 697 IEPAAIVWRSLLSACRIAGNVELGKYAAEMAISTDPKDSG 736



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 147/537 (27%), Positives = 263/537 (48%), Gaps = 33/537 (6%)

Query: 17  KSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML-SGLLPNSFTMV 75
           KS ++  A  +FD++P KN+++WS ++  YS  G+ E+++  F  +   SG  PN F + 
Sbjct: 74  KSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLA 133

Query: 76  GVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFEGLKNP 113
            V+ A   L  +E    +HG +V+ G + D                      +F+ L   
Sbjct: 134 SVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEK 193

Query: 114 YLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIH 173
             V+   I+AG+        ++ LF   R + +VP+   + +V+  C  L      + IH
Sbjct: 194 TAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIH 253

Query: 174 GLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAG 233
              ++ G  +DVSV N ++D Y+    + A  ++F +M  K++ISWT M+  ++   +  
Sbjct: 254 AYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDW 313

Query: 234 DALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSII 293
           +A+K+F EM +     D  A  ++++       L++G+Q+HA  +   L+S+  + N +I
Sbjct: 314 EAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLI 373

Query: 294 AMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDS 353
            MY+K   L  ++ VF+ + E++++S+ A+I GY       EAL  F +MR  +      
Sbjct: 374 DMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRV-RLFPPSL 432

Query: 354 ITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEE 413
           +T VS+L  S  L ALE+  Q+HG+  + G        + LI  YSKC  V  A  VFEE
Sbjct: 433 LTFVSLLGVSASLFALELSKQIHGLIIKFGVSLDLFAGSALIDVYSKCSYVKDARHVFEE 492

Query: 414 MGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTND 473
           M   +D+V WN + +GY  +   E AL LY  +  + + P+  T+ +++ A  +      
Sbjct: 493 MN-EKDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRH 551

Query: 474 GLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALL 530
           G    NQ+++   +         +VD+ A+ G + +A  +          +IWR ++
Sbjct: 552 GQQFHNQLVKMG-LDFCPFVTNALVDMYAKCGSIEEARKM-------FNSSIWRDVV 600



 Score =  198 bits (503), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 138/505 (27%), Positives = 244/505 (48%), Gaps = 34/505 (6%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+  Y K  ++K    LFD++  KN++SW+ +I GY  N F  ++MK F  M   G  P+
Sbjct: 271 LIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPD 330

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY-------------- 114
            F    VL +    + LE  R +H   +K  LESD F   GL + Y              
Sbjct: 331 GFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFD 390

Query: 115 ------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
                 ++S NA++ G+ + +   +A+ LF+  R     P+ +T ++++    +L +  L
Sbjct: 391 VMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALEL 450

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
            + IHGL IK G+ LD+   ++++D+YS    +  A  +F EM  KD++ W  M   +  
Sbjct: 451 SKQIHGLIIKFGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQ 510

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
                +ALK++  ++ SR   +      LI+  + L  L+ G+Q H Q+V  GL     +
Sbjct: 511 HLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFV 570

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
           +N+++ MY+KCG ++ +R +FN    + +V W ++IS + Q+G A EAL  F +M +E  
Sbjct: 571 TNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGI 630

Query: 349 DSVDSITLVSILTASGELAALEICLQ----LHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
              + +T V++L+A      +E  L     + G   + G   Y     C++S   + G +
Sbjct: 631 QP-NYVTFVAVLSACSHAGRVEDGLNHFNSMPGFGIKPGTEHYA----CVVSLLGRSGKL 685

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALY-HKMTETGEVPDSSTYLSILN 463
             A    E+M      + W +++    + G+ E  L  Y  +M  + +  DS +Y+ + N
Sbjct: 686 FEAKEFIEKMPIEPAAIVWRSLLSACRIAGNVE--LGKYAAEMAISTDPKDSGSYILLSN 743

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVK 488
                G+  D   + ++M     VK
Sbjct: 744 IFASKGMWADVKKVRDRMDSSEVVK 768



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 111/393 (28%), Positives = 204/393 (51%), Gaps = 25/393 (6%)

Query: 93  IHGLMVKFGLESD----------------------LFEGLKNPYLVSCNAIVAGFINNKL 130
           IHG ++  GL+SD                      +F+ + +  L++ +++V+ +     
Sbjct: 49  IHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGY 108

Query: 131 FQQAVLLF-NFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNN 189
            ++A+++F +  R SG  PN   + +VIR C  LG       +HG  ++ G   DV V  
Sbjct: 109 SEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGT 168

Query: 190 SVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIIC 249
           S++D YS   +++ A  +F ++  K  ++WT ++  +     +  +L++F +MR++ ++ 
Sbjct: 169 SLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVP 228

Query: 250 DTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVF 309
           D   + +++S  ++L  L+ GKQ+HA V+  G + ++ + N +I  Y+KC  + + R +F
Sbjct: 229 DRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLF 288

Query: 310 NQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAAL 369
           +Q+  K+++SWT +ISGY+QN    EA+  F +M +      D     S+LT+ G   AL
Sbjct: 289 DQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKP-DGFACTSVLTSCGSREAL 347

Query: 370 EICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYG 429
           E   Q+H    +A       V+N LI  Y+K   +  A  VF+ M   ++V+S+N +I G
Sbjct: 348 EQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMA-EQNVISYNAMIEG 406

Query: 430 YGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
           Y        AL L+H+M      P   T++S+L
Sbjct: 407 YSSQEKLSEALELFHEMRVRLFPPSLLTFVSLL 439



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 89/184 (48%), Gaps = 22/184 (11%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  S L+  Y K   +K+A ++F+E+ EK++V W+ +  GY+ +  +E+++K +S +
Sbjct: 465 LDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTL 524

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY------ 114
             S   PN FT   ++ AA+ L +L   +  H  +VK GL+   F    L + Y      
Sbjct: 525 QFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSI 584

Query: 115 --------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                         +V  N++++    +   ++A+ +F      G+ PN VT + V+  C
Sbjct: 585 EEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSAC 644

Query: 161 VALG 164
              G
Sbjct: 645 SHAG 648


>gi|357457477|ref|XP_003599019.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488067|gb|AES69270.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 944

 Score =  271 bits (693), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 174/619 (28%), Positives = 299/619 (48%), Gaps = 58/619 (9%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ L+  Y K G +  A+ +FD +  ++ VSW+ ++ GY  NG + + ++    M    +
Sbjct: 236 SNSLIDMYCKCGDVHSAQRVFDRMGVRDDVSWATMMAGYVKNGCYFEGLQLLHKMRRGNV 295

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
             N   +V  L+  A +++LE  + I+   ++ GL SD                      
Sbjct: 296 KMNKVAVVNALLVVAEMRDLEKGKEIYNYALQMGLMSDIVVATPIVCMYAKCGELKKARE 355

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           LF  L+   LV+ +A ++  +     ++ + +F   +  GL P+   +  ++ GC  + +
Sbjct: 356 LFLSLEGRDLVAWSAFLSALVETGYPREVLSIFQVMQYEGLKPDKAILSILVSGCTEISN 415

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
             L +++H   IK  +  D+S+  +++ MY        A+ +F  M+ KD++ W  ++  
Sbjct: 416 IGLGKIMHCYAIKADMESDISMVTTLVSMYIRFELFTYAMTLFNRMQIKDIVVWNTLING 475

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           F  +     AL++F  ++ S I+ D+  ++ L S  AI+ DL  G  LH  +   G +S+
Sbjct: 476 FTKYGDPHLALEMFNRLQLSGILPDSGTMVGLFSACAIMDDLDLGTCLHGGIEKSGFESD 535

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITE-KSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           + +  +++ MY+KCG L S   +F      K  VSW  +I+GY+ NG + EA++ F +M+
Sbjct: 536 IHVKVALMDMYAKCGSLCSVERLFLLTKHVKDEVSWNVMIAGYLHNGYSNEAISTFRRMK 595

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
            E     + +T V+IL A   L+ L   +  H      GF     + N LI  Y+KCG +
Sbjct: 596 LENVRP-NLVTFVTILPAVSYLSILREAMAFHTCIIRMGFLSCTLIGNSLIDMYAKCGQL 654

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
             +   F EM   +D +SWN ++  Y ++G GE A+AL+  M E+    DS +Y+S+L+A
Sbjct: 655 RYSEKCFHEMEN-KDTISWNAMLSAYAMHGQGELAVALFSVMQESNVRVDSVSYISVLSA 713

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C H+GL  +G  IF  M E++ V+PS EHY C+VDLL  AG   +   L  K+       
Sbjct: 714 CRHSGLIQEGWDIFASMCEKHHVEPSMEHYACMVDLLGCAGLFDEVLSLLNKMTTEPDAR 773

Query: 525 IWRALLSGCVLH---------------------------------VGRFQDAEALRSGSQ 551
           +W ALL+ C +H                                  GR+ DA   RS   
Sbjct: 774 VWGALLAACKIHSNVTLGEVAVHHLLKLEPRNPVHHVVLSDIYAQCGRWNDARRTRSHIN 833

Query: 552 KKGIIKIPGISFLNSTSRD 570
             G+ KIPG S++ +   +
Sbjct: 834 NHGLKKIPGYSWVGAHKNE 852



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 132/585 (22%), Positives = 280/585 (47%), Gaps = 25/585 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + L+  + K G +  A N+FD++P K+ V W+ +I G S +    ++++ F  M 
Sbjct: 133 DVYIGTSLIDMFCKMGCLDNARNVFDKMPVKDGVCWNAMISGLSQSLNPCEALEMFWRMQ 192

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYL-------- 115
           + G   +  +++ +  A + L ++   +SIHG +V+  +   +   L + Y         
Sbjct: 193 MEGFEVDKVSILNLAPAVSRLGDVGCCKSIHGYVVRRSICGVVSNSLIDMYCKCGDVHSA 252

Query: 116 ------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
                       VS   ++AG++ N  + + + L +  R   +  N V ++  +     +
Sbjct: 253 QRVFDRMGVRDDVSWATMMAGYVKNGCYFEGLQLLHKMRRGNVKMNKVAVVNALLVVAEM 312

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
                 + I+   +++GL+ D+ V   ++ MY+   +L  A ++F  +E +D+++W+  +
Sbjct: 313 RDLEKGKEIYNYALQMGLMSDIVVATPIVCMYAKCGELKKARELFLSLEGRDLVAWSAFL 372

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
              V+  Y  + L IF+ M+   +  D   L  L+S    + ++  GK +H   +   ++
Sbjct: 373 SALVETGYPREVLSIFQVMQYEGLKPDKAILSILVSGCTEISNIGLGKIMHCYAIKADME 432

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
           S++ +  ++++MY +      + ++FN++  K +V W  +I+G+ + G    AL  F ++
Sbjct: 433 SDISMVTTLVSMYIRFELFTYAMTLFNRMQIKDIVVWNTLINGFTKYGDPHLALEMFNRL 492

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
            Q      DS T+V + +A   +  L++   LHG   ++GF     V+  L+  Y+KCG+
Sbjct: 493 -QLSGILPDSGTMVGLFSACAIMDDLDLGTCLHGGIEKSGFESDIHVKVALMDMYAKCGS 551

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           +     +F     ++D VSWN +I GY  NG+   A++ + +M      P+  T+++IL 
Sbjct: 552 LCSVERLFLLTKHVKDEVSWNVMIAGYLHNGYSNEAISTFRRMKLENVRPNLVTFVTILP 611

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
           A  +  +  + +     +I    +  +      ++D+ A+ G L  +     + +E    
Sbjct: 612 AVSYLSILREAMAFHTCIIRMGFLSCTLIG-NSLIDMYAKCGQLRYSEKCFHE-MENKDT 669

Query: 524 NIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFLNSTS 568
             W A+LS   +H G+ + A AL S  Q+   +++  +S+++  S
Sbjct: 670 ISWNAMLSAYAMH-GQGELAVALFSVMQESN-VRVDSVSYISVLS 712



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 122/461 (26%), Positives = 227/461 (49%), Gaps = 26/461 (5%)

Query: 28  FDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNL 87
           F +I   +++ ++  I  YS      K++  +  ++  GL P+ FT   VL A     + 
Sbjct: 56  FLQIKNPSLILYNSFIKAYSKFHHFHKAINLYHTILKIGLKPDKFTFNFVLKACTSALDF 115

Query: 88  ELARSIHGLMVKFGLESDLFEGL--------------------KNPYL--VSCNAIVAGF 125
               +I+  +V  GLE D++ G                     K P    V  NA+++G 
Sbjct: 116 HEGVNIYKDIVFNGLECDVYIGTSLIDMFCKMGCLDNARNVFDKMPVKDGVCWNAMISGL 175

Query: 126 INNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDV 185
             +    +A+ +F   +  G   + V++L +      LG    C+ IHG  ++  +   V
Sbjct: 176 SQSLNPCEALEMFWRMQMEGFEVDKVSILNLAPAVSRLGDVGCCKSIHGYVVRRSICGVV 235

Query: 186 SVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKS 245
           S  NS++DMY    D+ +A ++F  M  +D +SW  MM  +V      + L++  +MR+ 
Sbjct: 236 S--NSLIDMYCKCGDVHSAQRVFDRMGVRDDVSWATMMAGYVKNGCYFEGLQLLHKMRRG 293

Query: 246 RIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSS 305
            +  + VA++N + V A + DL++GK+++   +  GL S++ ++  I+ MY+KCG+L  +
Sbjct: 294 NVKMNKVAVVNALLVVAEMRDLEKGKEIYNYALQMGLMSDIVVATPIVCMYAKCGELKKA 353

Query: 306 RSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGE 365
           R +F  +  + LV+W+A +S  V+ G  RE L+ F  M+ E     D   L  +++   E
Sbjct: 354 RELFLSLEGRDLVAWSAFLSALVETGYPREVLSIFQVMQYEGLKP-DKAILSILVSGCTE 412

Query: 366 LAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNT 425
           ++ + +   +H  A +A      S+   L+S Y +      A  +F  M  ++D+V WNT
Sbjct: 413 ISNIGLGKIMHCYAIKADMESDISMVTTLVSMYIRFELFTYAMTLFNRMQ-IKDIVVWNT 471

Query: 426 IIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           +I G+   G    AL +++++  +G +PDS T + + +AC 
Sbjct: 472 LINGFTKYGDPHLALEMFNRLQLSGILPDSGTMVGLFSACA 512


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  271 bits (693), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 186/621 (29%), Positives = 302/621 (48%), Gaps = 62/621 (9%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D     + L  +   G++  A  +FD IP  +  +++ +I  YS  G    ++  +  M+
Sbjct: 33  DKKQWQQELEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSML 92

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPYL------ 115
              + PN +T   VL A + L +L   R+IH      GL +DLF    L + Y+      
Sbjct: 93  RFRVAPNKYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFG 152

Query: 116 --------------VSCNAIVAGFINNKLFQQAVL-LFNFFRGSGLVPNAVTMLTVIRGC 160
                         V+ NA++AG+ N+ ++  A+  L +     GL PNA T+++++   
Sbjct: 153 PARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLL 212

Query: 161 VALGSRALCELIHGLTIKLGLILD---VSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
              G+      IH   ++  L  +   V +  ++LDMY+    L  A ++F  M  ++ +
Sbjct: 213 AQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDV 272

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMR-KSRIICDTVALLNLISVNAILGDLKRGKQLHAQ 276
           +W+ ++G FV  +   +A  +F++M  +        ++ + + V A L DL  G QLHA 
Sbjct: 273 TWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHAL 332

Query: 277 VVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
           +   G+ ++L  SNS+++MY+K G ++ +   F++I  K  +S+ A++SG VQNG A EA
Sbjct: 333 IAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEA 392

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
              F KM+    +  D  T+VS++ A   LAAL+     HG     G     S+ N LI 
Sbjct: 393 FLVFKKMQACNMEP-DIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSICNSLID 451

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
            Y+KCG +DL+  VF++M   RDVVSWNT+I GYG++G G+ A  L+  M   G  PD  
Sbjct: 452 MYAKCGKIDLSRQVFDKMP-ARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDV 510

Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK 516
           T++ ++ AC H+GL  +G   F+ M  +  + P  EHY C+VDLLAR G L +A      
Sbjct: 511 TFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGLLDEAYQFIQS 570

Query: 517 LLEGMGPNIWRALLSGCVLH---------------------------------VGRFQDA 543
           +       +W ALL  C +H                                  GRF +A
Sbjct: 571 MPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTGNFVLLSNIFSAAGRFDEA 630

Query: 544 EALRSGSQKKGIIKIPGISFL 564
             +R   + KG  K PG S++
Sbjct: 631 AEVRIIQKVKGFKKSPGYSWI 651


>gi|357130409|ref|XP_003566841.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 815

 Score =  271 bits (692), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 173/617 (28%), Positives = 296/617 (47%), Gaps = 58/617 (9%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           DPY  S L+  Y   G++  AE +   +PE++ VSW+ +++GY+ +G + + M     ++
Sbjct: 185 DPYVGSSLVEAYTSCGELDAAETVLLGLPERSDVSWNALLNGYARHGDYRRVMIIIEKLV 244

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
            SG   + +T+  VL     L   +  +S+H  ++K GLE+D                  
Sbjct: 245 ASGDEISKYTLPTVLKCCMELGLAKYGQSVHASVIKRGLETDNVLNSCLVEMYSRCLSAE 304

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +F  +  P +V C+A+++ F  + +  +A+ LF    G G+ PN    + +     
Sbjct: 305 EAYEVFIRIDEPDVVHCSAMISCFDRHDMAWEALDLFVKMSGMGVKPNHYIFVGIAGVAS 364

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
             G   LC  +H   +K G  +   V +++L+MY  +  +  A   F  +   D  SW  
Sbjct: 365 RTGDANLCRSVHAYIVKSGFAMLKGVGDAILNMYVKVGAVQDATVTFDLIHEPDTFSWNT 424

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++  F         L+IF++M       +    ++++     L +L+ G Q+HA ++  G
Sbjct: 425 ILSAFYSGSNCEQGLRIFKQMACEGFSANKYTYVSVLRCCTSLMNLRFGTQVHACILKSG 484

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           LQ++  +S  ++ MY++ G   S+  VF Q+ E+   SWT I+SGY +   A + +  F 
Sbjct: 485 LQNDTDVSRMLVDMYAQSGCFTSACLVFEQLKERDAFSWTVIMSGYAKTEEAEKVVEYFR 544

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
            M +E     D+   VS L+   ++A+L   LQLH  A ++G+     V   L+  Y KC
Sbjct: 545 SMLRENIRPSDATLAVS-LSVCSDMASLGSGLQLHSWAIKSGW-NSSVVSGALVDMYVKC 602

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           GN+  A ++F E    RD V+WNTII GY  +GHG  AL  + +M + G+ PD  T++ +
Sbjct: 603 GNIADAEMLFHE-SETRDQVAWNTIICGYSQHGHGYKALDAFKQMVDEGKRPDGITFVGV 661

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L+AC HAGL N+G   F  +     + P+ EHY C+VD+L++AG L +A  L  ++    
Sbjct: 662 LSACSHAGLLNEGRKYFKSLSSIYGITPTMEHYACMVDILSKAGRLVEAESLINQMPLAP 721

Query: 522 GPNIWRALLSGCVLH---------------------------------VGRFQDAEALRS 548
             +IWR +L  C +H                                 +GR+ D   +R+
Sbjct: 722 DSSIWRTILGACRIHRNIEIAERAAERLFELEPHDASSSILLSNIYADLGRWSDVTRVRN 781

Query: 549 GSQKKGIIKIPGISFLN 565
                G+ K PG S++ 
Sbjct: 782 ILLDHGVKKEPGCSWIE 798



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 143/578 (24%), Positives = 257/578 (44%), Gaps = 31/578 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +    LL+ Y K G++ +A  +FD +P +++V+W+ +I  ++  G  ++++  F+ M 
Sbjct: 84  DTFLLDSLLNMYCKCGRLVDARRVFDGMPHRDIVAWTAMISAHTAAGDSDQALDMFARMN 143

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKF-GLE-----SDLFE--------- 108
             G+ PN FT+  VL A +G  + +    +HG +VK  GL+     S L E         
Sbjct: 144 QEGIAPNGFTLASVLKACSGGSHSKFTHQVHGQVVKLNGLDDPYVGSSLVEAYTSCGELD 203

Query: 109 -------GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                  GL     VS NA++ G+  +  +++ +++      SG   +  T+ TV++ C+
Sbjct: 204 AAETVLLGLPERSDVSWNALLNGYARHGDYRRVMIIIEKLVASGDEISKYTLPTVLKCCM 263

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            LG     + +H   IK GL  D  +N+ +++MYS  +  + A ++F  ++  DV+  + 
Sbjct: 264 ELGLAKYGQSVHASVIKRGLETDNVLNSCLVEMYSRCLSAEEAYEVFIRIDEPDVVHCSA 323

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+  F   + A +AL +F +M    +  +    + +  V +  GD    + +HA +V  G
Sbjct: 324 MISCFDRHDMAWEALDLFVKMSGMGVKPNHYIFVGIAGVASRTGDANLCRSVHAYIVKSG 383

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
                 + ++I+ MY K G +  +   F+ I E    SW  I+S +       + L  F 
Sbjct: 384 FAMLKGVGDAILNMYVKVGAVQDATVTFDLIHEPDTFSWNTILSAFYSGSNCEQGLRIFK 443

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +M  E   S +  T VS+L     L  L    Q+H    ++G      V   L+  Y++ 
Sbjct: 444 QMACEGF-SANKYTYVSVLRCCTSLMNLRFGTQVHACILKSGLQNDTDVSRMLVDMYAQS 502

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G    A +VFE++   RD  SW  I+ GY      E  +  +  M      P  +T    
Sbjct: 503 GCFTSACLVFEQLK-ERDAFSWTVIMSGYAKTEEAEKVVEYFRSMLRENIRPSDATLAVS 561

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L+ C        GL + +  I+      S    G +VD+  + G ++DA  L  +  E  
Sbjct: 562 LSVCSDMASLGSGLQLHSWAIKSG--WNSSVVSGALVDMYVKCGNIADAEMLFHE-SETR 618

Query: 522 GPNIWRALLSGCVLHVGRFQDAEALRS----GSQKKGI 555
               W  ++ G   H   ++  +A +     G +  GI
Sbjct: 619 DQVAWNTIICGYSQHGHGYKALDAFKQMVDEGKRPDGI 656



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 127/248 (51%), Gaps = 7/248 (2%)

Query: 262 AILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWT 321
           A+   L+RG++LHA+++   L  +  L +S++ MY KCG L  +R VF+ +  + +V+WT
Sbjct: 61  AVRRTLRRGQELHARLLRSALHPDTFLLDSLLNMYCKCGRLVDARRVFDGMPHRDIVAWT 120

Query: 322 AIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFE 381
           A+IS +   G + +AL+ F +M QE   + +  TL S+L A    +  +   Q+HG   +
Sbjct: 121 AMISAHTAAGDSDQALDMFARMNQEGI-APNGFTLASVLKACSGGSHSKFTHQVHGQVVK 179

Query: 382 AGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFL-RDVVSWNTIIYGYGVNGHGETAL 440
                   V + L+ +Y+ CG +D A  V   +G   R  VSWN ++ GY  +G     +
Sbjct: 180 LNGLDDPYVGSSLVEAYTSCGELDAAETVL--LGLPERSDVSWNALLNGYARHGDYRRVM 237

Query: 441 ALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDL 500
            +  K+  +G+     T  ++L  C   GL   G  +   +I+   ++       C+V++
Sbjct: 238 IIIEKLVASGDEISKYTLPTVLKCCMELGLAKYGQSVHASVIKRG-LETDNVLNSCLVEM 296

Query: 501 LARAGCLS 508
            +R  CLS
Sbjct: 297 YSR--CLS 302



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 142/302 (47%), Gaps = 4/302 (1%)

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           +H   ++  L  D  + +S+L+MY     L  A ++F  M  +D+++WT M+        
Sbjct: 72  LHARLLRSALHPDTFLLDSLLNMYCKCGRLVDARRVFDGMPHRDIVAWTAMISAHTAAGD 131

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV-LGGLQSELRLSN 290
           +  AL +F  M +  I  +   L +++   +     K   Q+H QVV L GL     + +
Sbjct: 132 SDQALDMFARMNQEGIAPNGFTLASVLKACSGGSHSKFTHQVHGQVVKLNGLDDPY-VGS 190

Query: 291 SIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDS 350
           S++  Y+ CG+LD++ +V   + E+S VSW A+++GY ++G  R  +   I+      D 
Sbjct: 191 SLVEAYTSCGELDAAETVLLGLPERSDVSWNALLNGYARHGDYRRVM-IIIEKLVASGDE 249

Query: 351 VDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIV 410
           +   TL ++L    EL   +    +H    + G      + +CL+  YS+C + + AY V
Sbjct: 250 ISKYTLPTVLKCCMELGLAKYGQSVHASVIKRGLETDNVLNSCLVEMYSRCLSAEEAYEV 309

Query: 411 FEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGL 470
           F  +    DVV  + +I  +  +     AL L+ KM+  G  P+   ++ I       G 
Sbjct: 310 FIRID-EPDVVHCSAMISCFDRHDMAWEALDLFVKMSGMGVKPNHYIFVGIAGVASRTGD 368

Query: 471 TN 472
            N
Sbjct: 369 AN 370


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  271 bits (692), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 180/654 (27%), Positives = 309/654 (47%), Gaps = 90/654 (13%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L+  Y K    +    +FDE+ E+N V+W+ +I   +  G    ++  F  M 
Sbjct: 310 DTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQ 369

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------- 106
            SG   N F +  +L+A+AGL ++   R +HG +V+  L SD+                 
Sbjct: 370 ESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVE 429

Query: 107 -----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGS-GLVPNAVTMLTVIRGC 160
                F  L     VS NA++AG++     ++A+ L++  +   G+ P+  T  T++  C
Sbjct: 430 EAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLC 489

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
               +      IH   I+  +  ++ V   ++ MYS    L+ A +IF  M  ++  SW 
Sbjct: 490 ANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWN 549

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+  +       +AL++F++M+ + I  D  +L +++S    L D ++G++LH  +V  
Sbjct: 550 SMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRN 609

Query: 281 GLQSELRLSNSIIAMYSKCGDLD-------------------------------SSRSVF 309
            ++ E  L   ++ MY+KCG +D                                ++++F
Sbjct: 610 TMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLF 669

Query: 310 NQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAAL 369
           +Q+ +++   W +I++GY   G  +E+ N F++M +   +  D +T+V+I+     L AL
Sbjct: 670 DQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIE-YDVLTMVTIVNLCSSLPAL 728

Query: 370 EICLQLHGIAFEAGFPRYRSV-QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIY 428
           E   QLH +  + GF     V +  L+  YSKCG +  A  VF+ M   +++VSWN +I 
Sbjct: 729 EHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNG-KNIVSWNAMIS 787

Query: 429 GYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVK 488
           GY  +G  + AL LY +M + G  P+  T+L+IL+AC H GL  +GL IF  M E+  ++
Sbjct: 788 GYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIE 847

Query: 489 PSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH------------ 536
              EHY C+VDLL RAG L DA     K+      + W ALL  C +H            
Sbjct: 848 AKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQR 907

Query: 537 ---------------------VGRFQDAEALRSGSQKKGIIKIPGISFLNSTSR 569
                                 GR+++ E +R   + KG+ K PG+S++   S 
Sbjct: 908 LFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSE 961



 Score =  226 bits (575), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 154/573 (26%), Positives = 284/573 (49%), Gaps = 39/573 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKE---AENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           D Y  +K+L  Y +SG + +   A  LF+E+PE+N+ +W+ +I  Y+    + + ++ + 
Sbjct: 105 DAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYG 164

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG----------- 109
            M  SG   + FT   V+ A   ++++   R +   +VK GL  +LF G           
Sbjct: 165 RMRGSGNFSDKFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFG 224

Query: 110 -----------LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                      ++   +V+ NA++AG++    +++A  +F+     G+ P+  T  + +R
Sbjct: 225 WMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALR 284

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C AL SR   + +H   I  G   D  V N+++DMY+   D ++ +++F EM  ++ ++
Sbjct: 285 VCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVT 344

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           W  ++     F +  DAL +F  M++S    +   L +++  +A L D+ +G++LH  +V
Sbjct: 345 WNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLV 404

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
              L S++ L ++++ MYSKCG ++ +  VF  + E++ VS+ A+++GYVQ G A EAL 
Sbjct: 405 RNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALE 464

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
            +  M+ E     D  T  ++LT            Q+H     A   +   V+  L+  Y
Sbjct: 465 LYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMY 524

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
           S+CG ++ A  +F  M   R+  SWN++I GY  NG  + AL L+ +M   G  PD  + 
Sbjct: 525 SECGRLNYAKEIFNRMA-ERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSL 583

Query: 459 LSILNAC-----GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL 513
            S+L++C        G      ++ N M EE  ++        +VD+ A+ G +  A  +
Sbjct: 584 SSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQV------VLVDMYAKCGSMDYAWKV 637

Query: 514 AGKLLEGMGPNIWRALLSGCVLHVGRFQDAEAL 546
             + ++     I   ++    ++ GR  DA+ L
Sbjct: 638 YDQTIK--KDVILNNVMVSAFVNSGRANDAKNL 668



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 132/294 (44%), Gaps = 14/294 (4%)

Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDS---SRSVFNQITEKSLVSWTAI 323
            +RGK +H Q++  G   +  L   I+ +Y++ G LD    +R +F ++ E++L +W  +
Sbjct: 87  FQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTM 146

Query: 324 ISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG 383
           I  Y +     E L  + +MR     S D  T  S++ A   +  +    QL     +AG
Sbjct: 147 ILAYARVDDYMEVLRLYGRMRGSGNFS-DKFTFPSVIKACIAMEDMGGVRQLQSSVVKAG 205

Query: 384 FPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALY 443
                 V   L+  Y++ G +D A    +E+     VV+WN +I GY      E A  ++
Sbjct: 206 LNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGT-SVVTWNAVIAGYVKILSWEEAWGIF 264

Query: 444 HKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLAR 503
            +M + G  PD+ T+ S L  CG     + G  + +++I     K        ++D+ A+
Sbjct: 265 DRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACG-FKGDTFVGNALIDMYAK 323

Query: 504 AGCLSDASGLAGKLLEGMGPN---IWRALLSGCVLHVGRFQDAEALRSGSQKKG 554
             C  + S L  K+ + MG      W +++S      G F DA  L    Q+ G
Sbjct: 324 --CDDEESCL--KVFDEMGERNQVTWNSIISAEA-QFGHFNDALVLFLRMQESG 372


>gi|147819178|emb|CAN71462.1| hypothetical protein VITISV_018656 [Vitis vinifera]
          Length = 787

 Score =  270 bits (691), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 176/621 (28%), Positives = 303/621 (48%), Gaps = 86/621 (13%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C+D +  + LL+ Y KS  + +A  LFDE+PE+N +S+  +I GY+ +    ++++ F  
Sbjct: 70  CLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVR 129

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES----------------- 104
           +   G   N F    +L     +   EL   IH  + K G ES                 
Sbjct: 130 LHREGHELNPFVFTTILKLLVSMDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGR 189

Query: 105 -----DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                ++F+G+    +VS   +V  F  N  F++A+ LF+  R  G  PN  T  +V + 
Sbjct: 190 VDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKA 249

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C+ L +  + + +HG  +K    LD+ V  ++LD+Y+   D+D A   F E+  KDVI W
Sbjct: 250 CLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARXAFEEIPKKDVIPW 309

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           + M+  +   + + +A+++F +MR++ ++ +     +++   A +  L  G Q+H  V+ 
Sbjct: 310 SFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVIK 369

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVS-WTAIISGYVQNGCAREALN 338
            GL S++ +SN+++ +Y+KCG +++S  +F +   ++ V+ W  +I G+VQ G   +AL 
Sbjct: 370 IGLHSDVFVSNALMDVYAKCGRMENSMXLFAESPHRNDVTPWNTVIVGHVQLGDGEKALR 429

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
            F+ M + +  + + +T  S L A   LAALE  LQ+H +  +  F +   V N LI  Y
Sbjct: 430 LFLNMLEYRVQATE-VTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMY 488

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
           +KCG++  A +VF+ M   +D VSWN +I GY ++G                        
Sbjct: 489 AKCGSIKDARLVFDLMN-KQDEVSWNAMISGYSMHGL----------------------- 524

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
                AC +AGL + G   F  MI+++ ++P  EHY C+V LL R G L  A  L  ++ 
Sbjct: 525 -----ACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIP 579

Query: 519 EGMGPNIWRALLSGCVLH---------------------------------VGRFQDAEA 545
                 +WRALL  CV+H                                   R+ +  +
Sbjct: 580 FQPSVMVWRALLGACVIHNDIELGRISAQHVLEMEPQDKATHVLLSNMYATAKRWDNVAS 639

Query: 546 LRSGSQKKGIIKIPGISFLNS 566
           +R   ++KG+ K PG+S++ S
Sbjct: 640 VRKNMKRKGVKKEPGLSWIES 660



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 170/337 (50%), Gaps = 14/337 (4%)

Query: 149 NAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIF 208
           N+      ++ C+     +  + +H   +K G  LD+   N +L+MY     L  A ++F
Sbjct: 37  NSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLF 96

Query: 209 REMECKDVISWTRMMGLFVDFEYAGDALKIF----REMRKSRIICDTVALLNLISVNAIL 264
            EM  ++ IS+  ++  + +     +A+++F    RE  +      T  L  L+S++   
Sbjct: 97  DEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVSMDC-- 154

Query: 265 GDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAII 324
           G+L  G  +HA +   G +S   +  ++I  YS CG +D +R VF+ I  K +VSWT ++
Sbjct: 155 GELGWG--IHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMV 212

Query: 325 SGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGF 384
           + + +N C +EAL  F +MR       ++ T  S+  A   L A ++   +HG A ++ +
Sbjct: 213 TCFAENDCFKEALKLFSQMRMVGFKP-NNFTFASVFKACLGLEAFDVGKSVHGCALKSRY 271

Query: 385 PRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH 444
                V   L+  Y+K G++D A   FEE+   +DV+ W+ +I  Y  +   + A+ ++ 
Sbjct: 272 ELDLYVGVALLDLYTKSGDIDDARXAFEEIP-KKDVIPWSFMIARYAQSDQSKEAVEMFF 330

Query: 445 KMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQM 481
           +M +   +P+  T+ S+L AC     T +GL + NQ+
Sbjct: 331 QMRQALVLPNQFTFASVLQACA----TMEGLNLGNQI 363


>gi|255539110|ref|XP_002510620.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551321|gb|EEF52807.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 708

 Score =  270 bits (691), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 180/624 (28%), Positives = 308/624 (49%), Gaps = 61/624 (9%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKS--MKAF 59
           CI  Y ++ L++ Y K   + +A+ +FD I  K+V+SW+ +I+GYS  G    S  M+ F
Sbjct: 42  CI--YLANSLINFYAKCCHLPKAKLVFDRIHNKDVISWNCLINGYSQQGPTGSSFVMELF 99

Query: 60  SHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPYL-- 115
             M    +LPN+ T  G+  AA+ L ++   +  H + +K     D+F G  L N Y   
Sbjct: 100 QRMRADNILPNAHTFSGIFTAASNLSSIFFGQQAHAVAIKMACFYDVFVGSSLLNMYCKA 159

Query: 116 ------------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
                             V+   +++G+   +L  +A  +F   R      N     +V+
Sbjct: 160 GLLFEAREVFDRMPERNEVTWATMISGYAIQRLAGEAFEVFELMRREEEDVNEFAFTSVL 219

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
                       + IH L +K GL++ +S+ N+++ MY+    LD ++Q+F     K+ I
Sbjct: 220 SALAVPEFVDSGKQIHCLAVKTGLLVFLSILNALVTMYAKCGSLDDSLQVFEMSNDKNSI 279

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           +W+ M+  +     +  ALK+F  M  + I      L+ +++  +    ++ GKQ+H  +
Sbjct: 280 TWSAMITGYAQSGDSHKALKLFSRMHFAGINPSEFTLVGVLNACSDACAVEEGKQVHNYL 339

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           +  G +S+L +  +++ MY+K G  + +R  FN + +  LV WT++I+GYVQNG   +AL
Sbjct: 340 LKLGFESQLYIMTALVDMYAKSGVTEDARKGFNYLQQPDLVLWTSMIAGYVQNGENEDAL 399

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
           + + +M+ E     + +T+ S+L A   LAA +   Q+H    + G     ++ + L + 
Sbjct: 400 SLYCRMQMEGILP-NELTMASVLKACSNLAAFDQGRQIHARTIKYGLGLEVTIGSALSTM 458

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           Y+KCGN++   IVF  M   RD++SWN +I G   NG+G+ AL L+ +M +    PD  T
Sbjct: 459 YAKCGNLEEGNIVFRRMP-ERDIISWNAMISGLSQNGYGKEALELFEEMRQQDTKPDDVT 517

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL 517
           ++++L+AC H GL + G + F  M +E  + P  EHY C+VD+L+RAG L +A       
Sbjct: 518 FVNVLSACSHMGLVDSGWLYFRMMFDEFGLLPKVEHYACMVDVLSRAGKLYEAKEFIEST 577

Query: 518 LEGMGPNIWR---------------------------------ALLSGCVLHVGRFQDAE 544
               G  +WR                                  LLSG    +GR +D E
Sbjct: 578 TIDHGLCLWRILLGACRNYRNYELGAYAGEKLMELGSQESSAYVLLSGIYTALGRPEDVE 637

Query: 545 ALRSGSQKKGIIKIPGISFLNSTS 568
            +RS  + +G+ K PG S++   S
Sbjct: 638 RVRSMMKVRGVSKEPGCSWIELKS 661



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 122/442 (27%), Positives = 206/442 (46%), Gaps = 27/442 (6%)

Query: 67  LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---LFEGLKNPYLVSCNAIVA 123
           L P + +    LV     ++L+  R++H  ++K    S    L   L N Y   C+   A
Sbjct: 3   LHPQNLSSFNSLVQFTHQKSLQKGRALHAQIIKLASSSSCIYLANSLINFYAKCCHLPKA 62

Query: 124 GFINNKLFQQAVL----------------------LFNFFRGSGLVPNAVTMLTVIRGCV 161
             + +++  + V+                      LF   R   ++PNA T   +     
Sbjct: 63  KLVFDRIHNKDVISWNCLINGYSQQGPTGSSFVMELFQRMRADNILPNAHTFSGIFTAAS 122

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            L S    +  H + IK+    DV V +S+L+MY     L  A ++F  M  ++ ++W  
Sbjct: 123 NLSSIFFGQQAHAVAIKMACFYDVFVGSSLLNMYCKAGLLFEAREVFDRMPERNEVTWAT 182

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+  +     AG+A ++F  MR+     +  A  +++S  A+   +  GKQ+H   V  G
Sbjct: 183 MISGYAIQRLAGEAFEVFELMRREEEDVNEFAFTSVLSALAVPEFVDSGKQIHCLAVKTG 242

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           L   L + N+++ MY+KCG LD S  VF    +K+ ++W+A+I+GY Q+G + +AL  F 
Sbjct: 243 LLVFLSILNALVTMYAKCGSLDDSLQVFEMSNDKNSITWSAMITGYAQSGDSHKALKLFS 302

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +M     +  +  TLV +L A  +  A+E   Q+H    + GF     +   L+  Y+K 
Sbjct: 303 RMHFAGINPSE-FTLVGVLNACSDACAVEEGKQVHNYLLKLGFESQLYIMTALVDMYAKS 361

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G  + A   F  +    D+V W ++I GY  NG  E AL+LY +M   G +P+  T  S+
Sbjct: 362 GVTEDARKGFNYLQ-QPDLVLWTSMIAGYVQNGENEDALSLYCRMQMEGILPNELTMASV 420

Query: 462 LNACGHAGLTNDGLVIFNQMIE 483
           L AC +    + G  I  + I+
Sbjct: 421 LKACSNLAAFDQGRQIHARTIK 442


>gi|449476598|ref|XP_004154781.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Cucumis sativus]
          Length = 709

 Score =  270 bits (691), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 182/611 (29%), Positives = 293/611 (47%), Gaps = 86/611 (14%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSG-L 67
           S L  +Y   G +  A  LFD++ + ++  W+ +I  Y   GFH  +++ F  M+ SG  
Sbjct: 121 SHLAVSYAFCGCVPLARKLFDDLSDPSLFLWNAIIKMYVDKGFHFDALRVFDSMICSGKF 180

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMV----------------------KFGLESD 105
            P+ +T   V+ A + +  L +   IHG  +                      K GL   
Sbjct: 181 WPDKYTFPLVIKACSVMSMLNVGVLIHGRALVSGFSSNMFVQNSLLAMYMNCGKVGLARQ 240

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F  +    +VS N +++G+  N   ++A+ +FN    + + P++ T+++ +  C  L  
Sbjct: 241 VFNVMLKRSVVSWNTMISGWFQNGRPEEALAVFNSMMDARVEPDSATIVSALPSCGYLKE 300

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
             L   +H L  K  L   + V N+++DMYS    +D A  +F E + KDVI+WT M+  
Sbjct: 301 LELGIKVHKLVQKNHLQEKIEVRNALVDMYSRCGGIDEASLVFAETKEKDVITWTSMING 360

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           ++    A  AL +   M+   ++ + V L +L+S  A                       
Sbjct: 361 YIMNGNAKSALALCPAMQLDGVVPNAVTLASLLSACA----------------------- 397

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
                S+  MY+KC  +  S  VF + ++K  V W A++SG + N  AREA+  F  M  
Sbjct: 398 -----SLCYMYAKCNAVSYSFQVFAKTSKKRTVPWNALLSGLIHNELAREAVGLFKSMLI 452

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
           E+ ++ +  T  S++ A   LA L+  + LH     +GF    +V   LI  YSKCG++D
Sbjct: 453 EEVEA-NHATFNSVIPAYAILADLKQVMNLHSYLVRSGFISKIAVITGLIDMYSKCGSLD 511

Query: 406 LAYIVFEEM-GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
            A+ +F+E+    +D++ W+ +I GYG++GHGETA+ L+++M  +G  P+  T+ S+L+A
Sbjct: 512 YAHKIFDEIPNKEKDIIVWSVLIAGYGMHGHGETAVLLFNQMVHSGMQPNEITFTSVLHA 571

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C H GL +DGL +F  MIE     P   HY CVVDLL RAG L +A  L   +      +
Sbjct: 572 CSHRGLVDDGLTLFKYMIENYPSSPLPNHYTCVVDLLGRAGRLDEAYDLIKSMPFQQNHS 631

Query: 525 IWRALLSGCVLH---------------------------------VGRFQDAEALRSGSQ 551
           IW ALL  C++H                                 VGR++DAE +R    
Sbjct: 632 IWGALLGACLIHQNVELGEVAAERLFELEPESTGNYILLANIYAAVGRWKDAENVRHIMS 691

Query: 552 KKGIIKIPGIS 562
           K G+ K P  S
Sbjct: 692 KIGLRKTPAQS 702



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 100/329 (30%), Positives = 176/329 (53%), Gaps = 6/329 (1%)

Query: 142 RGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILD---VSVNNSVLDMYSCL 198
           +   L+ N     +++R   A  S    +++HG TI  GL+     + + + +   Y+  
Sbjct: 71  KSKSLIANVHRCDSLLRHYAATRSLNKTKILHGHTITSGLLHSPNFIHLPSHLAVSYAFC 130

Query: 199 MDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKS-RIICDTVALLNL 257
             +  A ++F ++    +  W  ++ ++VD  +  DAL++F  M  S +   D      +
Sbjct: 131 GCVPLARKLFDDLSDPSLFLWNAIIKMYVDKGFHFDALRVFDSMICSGKFWPDKYTFPLV 190

Query: 258 ISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSL 317
           I   +++  L  G  +H + ++ G  S + + NS++AMY  CG +  +R VFN + ++S+
Sbjct: 191 IKACSVMSMLNVGVLIHGRALVSGFSSNMFVQNSLLAMYMNCGKVGLARQVFNVMLKRSV 250

Query: 318 VSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHG 377
           VSW  +ISG+ QNG   EAL  F  M   + +  DS T+VS L + G L  LE+ +++H 
Sbjct: 251 VSWNTMISGWFQNGRPEEALAVFNSMMDARVEP-DSATIVSALPSCGYLKELELGIKVHK 309

Query: 378 IAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGE 437
           +  +        V+N L+  YS+CG +D A +VF E    +DV++W ++I GY +NG+ +
Sbjct: 310 LVQKNHLQEKIEVRNALVDMYSRCGGIDEASLVFAETK-EKDVITWTSMINGYIMNGNAK 368

Query: 438 TALALYHKMTETGEVPDSSTYLSILNACG 466
           +ALAL   M   G VP++ T  S+L+AC 
Sbjct: 369 SALALCPAMQLDGVVPNAVTLASLLSACA 397



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/293 (30%), Positives = 150/293 (51%), Gaps = 7/293 (2%)

Query: 267 LKRGKQLHAQVVLGGLQSE---LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAI 323
           L + K LH   +  GL      + L + +   Y+ CG +  +R +F+ +++ SL  W AI
Sbjct: 95  LNKTKILHGHTITSGLLHSPNFIHLPSHLAVSYAFCGCVPLARKLFDDLSDPSLFLWNAI 154

Query: 324 ISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG 383
           I  YV  G   +AL  F  M        D  T   ++ A   ++ L + + +HG A  +G
Sbjct: 155 IKMYVDKGFHFDALRVFDSMICSGKFWPDKYTFPLVIKACSVMSMLNVGVLIHGRALVSG 214

Query: 384 FPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALY 443
           F     VQN L++ Y  CG V LA  VF  M   R VVSWNT+I G+  NG  E ALA++
Sbjct: 215 FSSNMFVQNSLLAMYMNCGKVGLARQVFNVM-LKRSVVSWNTMISGWFQNGRPEEALAVF 273

Query: 444 HKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLAR 503
           + M +    PDS+T +S L +CG+      G+ + ++++++N ++   E    +VD+ +R
Sbjct: 274 NSMMDARVEPDSATIVSALPSCGYLKELELGIKV-HKLVQKNHLQEKIEVRNALVDMYSR 332

Query: 504 AGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGII 556
            G + +AS +  +  E      W ++++G +++ G  + A AL    Q  G++
Sbjct: 333 CGGIDEASLVFAETKEK-DVITWTSMINGYIMN-GNAKSALALCPAMQLDGVV 383


>gi|413932453|gb|AFW67004.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 913

 Score =  270 bits (690), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 177/562 (31%), Positives = 276/562 (49%), Gaps = 39/562 (6%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  D     K L    KSG++ +A +LFD +P KNVV+W+  I G + NG  E +   F+
Sbjct: 66  PPPDVVLDCKRLDGLMKSGRLGDALDLFDRMPRKNVVAWTTAISGCTRNGRPEAAATMFA 125

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--------------- 105
            M+ SG+ PN F     L A A    L L   +H L V+ G  +D               
Sbjct: 126 DMLESGVAPNDFACNAALAACAAAGALGLGEQVHSLAVRAGFAADAWIGSCLIELYSRCG 185

Query: 106 -------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                  +F  ++ P +V   ++V+    N    +AV +       GL PN  TM +++ 
Sbjct: 186 SLRAAEEVFRRMEAPDVVGYTSLVSALCRNGELARAVDVLCQMTRQGLQPNEHTMTSMLA 245

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C     R + E IHG  +K+     V  + +++D YS   D   A  +F  +E K+V+S
Sbjct: 246 EC----PRGIGEQIHGYMLKVMGSQSVYASTALIDFYSRYGDFGTAKTVFENLESKNVVS 301

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           W  MM L +      DAL++F EM    +  +  A    +S     G +  G+Q+H   +
Sbjct: 302 WCSMMQLCIRDGRLDDALRVFSEMISEGVQPNEFAFSIALSA---CGSVCLGRQIHCSAI 358

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
              L +++R+SN++++MY + G +    +V  +I    LVSWTA IS   QNG + +A+ 
Sbjct: 359 KRDLMTDIRVSNALLSMYGRSGFVSELEAVLGKIENPDLVSWTAAISANFQNGFSEKAVA 418

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
             ++M  E     D     S L++  +LA L    QLH +A + G        N LI+ Y
Sbjct: 419 LLLQMHSEGFTPND-YAFSSGLSSCADLALLHQGRQLHCLALKLGCDFKVCTGNALINMY 477

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
           SKCG +  A + F+ M    DV+SWN++I+G   +G    AL  + +M  +   PD ST+
Sbjct: 478 SKCGRIGSARLAFDVMD-THDVMSWNSLIHGLAQHGDANLALETFSEMCSSDWRPDDSTF 536

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
           LS+L  C HAGL  +G   F QM +   + P+  HY C++D+L R G  ++A     +++
Sbjct: 537 LSVLVGCNHAGLVKEGETFFRQMTDRYGLTPTPSHYACMIDMLGRNGRFAEAL----RMI 592

Query: 519 EGMG--PN--IWRALLSGCVLH 536
           E M   P+  IW+ LL+ C LH
Sbjct: 593 ENMPFEPDVLIWKTLLASCKLH 614



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 118/483 (24%), Positives = 205/483 (42%), Gaps = 32/483 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  S L+  Y + G ++ AE +F  +   +VV ++ ++     NG   +++     M 
Sbjct: 170 DAWIGSCLIELYSRCGSLRAAEEVFRRMEAPDVVGYTSLVSALCRNGELARAVDVLCQMT 229

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK----------------------FG 101
             GL PN  TM  +L          +   IHG M+K                      FG
Sbjct: 230 RQGLQPNEHTMTSMLAECP----RGIGEQIHGYMLKVMGSQSVYASTALIDFYSRYGDFG 285

Query: 102 LESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +FE L++  +VS  +++   I +     A+ +F+     G+ PN       +  C 
Sbjct: 286 TAKTVFENLESKNVVSWCSMMQLCIRDGRLDDALRVFSEMISEGVQPNEFAFSIALSAC- 344

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
             GS  L   IH   IK  L+ D+ V+N++L MY     +     +  ++E  D++SWT 
Sbjct: 345 --GSVCLGRQIHCSAIKRDLMTDIRVSNALLSMYGRSGFVSELEAVLGKIENPDLVSWTA 402

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
            +       ++  A+ +  +M       +  A  + +S  A L  L +G+QLH   +  G
Sbjct: 403 AISANFQNGFSEKAVALLLQMHSEGFTPNDYAFSSGLSSCADLALLHQGRQLHCLALKLG 462

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
              ++   N++I MYSKCG + S+R  F+ +    ++SW ++I G  Q+G A  AL  F 
Sbjct: 463 CDFKVCTGNALINMYSKCGRIGSARLAFDVMDTHDVMSWNSLIHGLAQHGDANLALETFS 522

Query: 342 KMRQEKTDSVDSITLVSILTASGELAAL-EICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
           +M        DS T +S+L        + E       +    G     S   C+I    +
Sbjct: 523 EMCSSDWRPDDS-TFLSVLVGCNHAGLVKEGETFFRQMTDRYGLTPTPSHYACMIDMLGR 581

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
            G    A  + E M F  DV+ W T++    ++ + +       K+ E  E  DS++Y+ 
Sbjct: 582 NGRFAEALRMIENMPFEPDVLIWKTLLASCKLHRNLDIGKLAADKLMELSER-DSASYVL 640

Query: 461 ILN 463
           + N
Sbjct: 641 MSN 643


>gi|297736528|emb|CBI25399.3| unnamed protein product [Vitis vinifera]
          Length = 846

 Score =  270 bits (690), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 181/615 (29%), Positives = 301/615 (48%), Gaps = 64/615 (10%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTM 74
           Y K  + + A  +FDE+P++NV SW+++I G + +G      K F  M+ SG+LP+ F  
Sbjct: 111 YSKCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAY 170

Query: 75  VGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPYL----------------- 115
             ++ +  GL +LEL + +H  +V  G  + +F    L N Y                  
Sbjct: 171 SAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTE 230

Query: 116 ---VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELI 172
              VS NA+++G  +N L  +A  LF   +     PN  T+++V +    L    + + +
Sbjct: 231 HNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEV 290

Query: 173 HGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFRE--MECKDVISWTRMMGLFVDFE 230
                +LG+  +V V  +++DMYS    L  A  +F    + C     W  M+  +    
Sbjct: 291 QNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSG 350

Query: 231 YAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ-SELRLS 289
            + +AL+++ +M ++ I  D     ++ +  A    L+ G+ +H  V+  GL    + ++
Sbjct: 351 CSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVN 410

Query: 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD 349
           N+I   YSKCG L+  R VF+++ E+ +VSWT +++ Y Q+    EAL  F  MR+E   
Sbjct: 411 NAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGF- 469

Query: 350 SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYI 409
           + +  T  S+L +   L  LE   Q+HG+  +AG    + +++ LI  Y+KCG++  A  
Sbjct: 470 APNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGK 529

Query: 410 VFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAG 469
           VF+++    D+VSW  II GY  +G  E AL L+ +M  +G   ++ T L +L AC H G
Sbjct: 530 VFDKISN-PDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGG 588

Query: 470 LTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN--IWR 527
           +  +GL  F QM +   V P  EHY C++DLL R G L DA     K+   M PN  +W+
Sbjct: 589 MVEEGLFYFQQMEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFIRKM--PMEPNEMVWQ 646

Query: 528 ALLSGCVLH---------------------------------VGRFQDAEALRSGSQKKG 554
            LL GC +H                                  G ++D  +LR+  + +G
Sbjct: 647 TLLGGCRVHGNVELGEIAARKILSIRPEYSATYVLLSNTYIETGSYEDGLSLRNVMKDQG 706

Query: 555 IIKIPGISFLNSTSR 569
           + K PG S+++   R
Sbjct: 707 VKKEPGYSWISVKGR 721



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 134/507 (26%), Positives = 246/507 (48%), Gaps = 32/507 (6%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           + S+ LL+ Y K G I+++  +F+ + E N VSW+ +I G + NG H ++   F  M   
Sbjct: 203 FVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNG 262

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLK-------------- 111
              PN +T+V V  A   L ++ + + +     + G+E ++  G                
Sbjct: 263 ACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGTALIDMYSKCGSLHDA 322

Query: 112 ----NPYLVSC------NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +   ++C      NA+++G+  +   Q+A+ L+     +G+  +  T  +V     
Sbjct: 323 RSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIA 382

Query: 162 ALGSRALCELIHGLTIKLGL-ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
           A  S     ++HG+ +K GL ++ VSVNN++ D YS    L+   ++F  ME +D++SWT
Sbjct: 383 ASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDRMEERDIVSWT 442

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++  +       +AL  F  MR+     +     +++   A L  L+ G+Q+H  +   
Sbjct: 443 TLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCFLEYGRQVHGLLCKA 502

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           GL +E  + +++I MY+KCG +  +  VF++I+   +VSWTAIISGY Q+G   +AL  F
Sbjct: 503 GLDTEKCIESALIDMYAKCGSITEAGKVFDKISNPDIVSWTAIISGYAQHGLVEDALQLF 562

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN--CLISSY 398
            +M      + +++TL+ +L A      +E  L  +    E G+     +++  C+I   
Sbjct: 563 RRMELSGIKA-NAVTLLCVLFACSHGGMVEEGL-FYFQQMEDGYGVVPEMEHYACIIDLL 620

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD-SST 457
            + G +D A     +M    + + W T++ G  V+G+ E       K+      P+ S+T
Sbjct: 621 GRVGRLDDAMEFIRKMPMEPNEMVWQTLLGGCRVHGNVELGEIAARKILSIR--PEYSAT 678

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEE 484
           Y+ + N     G   DGL + N M ++
Sbjct: 679 YVLLSNTYIETGSYEDGLSLRNVMKDQ 705



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 139/520 (26%), Positives = 241/520 (46%), Gaps = 54/520 (10%)

Query: 74  MVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------------LFEG 109
           ++ VL   A   ++  A+++HGL++K   E                          +F+ 
Sbjct: 67  LIDVLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAACGVFDE 126

Query: 110 LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALC 169
           +    + S   ++ G   + LF      F     SG++P+      +I+ C+ L S  L 
Sbjct: 127 MPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSLELG 186

Query: 170 ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDF 229
           +++H   +  G    + V+ S+L+MY+ L  ++ +  +F  M   + +SW  M+      
Sbjct: 187 KMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSN 246

Query: 230 EYAGDALKIFREMRKSRIICDTVALLNLISVNAILG---DLKRGKQLHAQVVLGGLQSEL 286
               +A  +F  M+       T  +  L+SV+  +G   D+  GK++       G++  +
Sbjct: 247 GLHLEAFDLFVRMKNGAC---TPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNV 303

Query: 287 RLSNSIIAMYSKCGDLDSSRSVF--NQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
            +  ++I MYSKCG L  +RSVF  N I       W A+ISGY Q+GC++EAL  +++M 
Sbjct: 304 LVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMC 363

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFP-RYRSVQNCLISSYSKCGN 403
           Q    S D  T  S+  A     +L+    +HG+  + G      SV N +  +YSKCG 
Sbjct: 364 QNGITS-DLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGF 422

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           ++    VF+ M   RD+VSW T++  Y  +  GE ALA +  M E G  P+  T+ S+L 
Sbjct: 423 LEDVRKVFDRME-ERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLI 481

Query: 464 ACG-----HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
           +C        G    GL+    +  E  ++ +      ++D+ A+ G +++    AGK+ 
Sbjct: 482 SCASLCFLEYGRQVHGLLCKAGLDTEKCIESA------LIDMYAKCGSITE----AGKVF 531

Query: 519 EGMG-PNI--WRALLSGCVLHVGRFQDAEALRSGSQKKGI 555
           + +  P+I  W A++SG   H G  +DA  L    +  GI
Sbjct: 532 DKISNPDIVSWTAIISGYAQH-GLVEDALQLFRRMELSGI 570


>gi|225448607|ref|XP_002274158.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 820

 Score =  270 bits (690), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 181/615 (29%), Positives = 301/615 (48%), Gaps = 64/615 (10%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTM 74
           Y K  + + A  +FDE+P++NV SW+++I G + +G      K F  M+ SG+LP+ F  
Sbjct: 165 YSKCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAY 224

Query: 75  VGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPYL----------------- 115
             ++ +  GL +LEL + +H  +V  G  + +F    L N Y                  
Sbjct: 225 SAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTE 284

Query: 116 ---VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELI 172
              VS NA+++G  +N L  +A  LF   +     PN  T+++V +    L    + + +
Sbjct: 285 HNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEV 344

Query: 173 HGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFRE--MECKDVISWTRMMGLFVDFE 230
                +LG+  +V V  +++DMYS    L  A  +F    + C     W  M+  +    
Sbjct: 345 QNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSG 404

Query: 231 YAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ-SELRLS 289
            + +AL+++ +M ++ I  D     ++ +  A    L+ G+ +H  V+  GL    + ++
Sbjct: 405 CSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVN 464

Query: 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD 349
           N+I   YSKCG L+  R VF+++ E+ +VSWT +++ Y Q+    EAL  F  MR+E   
Sbjct: 465 NAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGF- 523

Query: 350 SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYI 409
           + +  T  S+L +   L  LE   Q+HG+  +AG    + +++ LI  Y+KCG++  A  
Sbjct: 524 APNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGK 583

Query: 410 VFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAG 469
           VF+++    D+VSW  II GY  +G  E AL L+ +M  +G   ++ T L +L AC H G
Sbjct: 584 VFDKISN-PDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGG 642

Query: 470 LTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN--IWR 527
           +  +GL  F QM +   V P  EHY C++DLL R G L DA     K+   M PN  +W+
Sbjct: 643 MVEEGLFYFQQMEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFIRKM--PMEPNEMVWQ 700

Query: 528 ALLSGCVLH---------------------------------VGRFQDAEALRSGSQKKG 554
            LL GC +H                                  G ++D  +LR+  + +G
Sbjct: 701 TLLGGCRVHGNVELGEIAARKILSIRPEYSATYVLLSNTYIETGSYEDGLSLRNVMKDQG 760

Query: 555 IIKIPGISFLNSTSR 569
           + K PG S+++   R
Sbjct: 761 VKKEPGYSWISVKGR 775



 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 136/511 (26%), Positives = 248/511 (48%), Gaps = 33/511 (6%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ LL+ Y K G I+++  +F+ + E N VSW+ +I G + NG H ++   F  M     
Sbjct: 259 STSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGAC 318

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLK---------------- 111
            PN +T+V V  A   L ++ + + +     + G+E ++  G                  
Sbjct: 319 TPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARS 378

Query: 112 --NPYLVSC------NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
             +   ++C      NA+++G+  +   Q+A+ L+     +G+  +  T  +V     A 
Sbjct: 379 VFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAAS 438

Query: 164 GSRALCELIHGLTIKLGL-ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
            S     ++HG+ +K GL ++ VSVNN++ D YS    L+   ++F  ME +D++SWT +
Sbjct: 439 KSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTL 498

Query: 223 MGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL 282
           +  +       +AL  F  MR+     +     +++   A L  L+ G+Q+H  +   GL
Sbjct: 499 VTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGL 558

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
            +E  + +++I MY+KCG +  +  VF++I+   +VSWTAIISGY Q+G   +AL  F +
Sbjct: 559 DTEKCIESALIDMYAKCGSITEAGKVFDKISNPDIVSWTAIISGYAQHGLVEDALQLFRR 618

Query: 343 MRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN--CLISSYSK 400
           M      + +++TL+ +L A      +E  L  +    E G+     +++  C+I    +
Sbjct: 619 MELSGIKA-NAVTLLCVLFACSHGGMVEEGL-FYFQQMEDGYGVVPEMEHYACIIDLLGR 676

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD-SSTYL 459
            G +D A     +M    + + W T++ G  V+G+ E       K+      P+ S+TY+
Sbjct: 677 VGRLDDAMEFIRKMPMEPNEMVWQTLLGGCRVHGNVELGEIAARKILSIR--PEYSATYV 734

Query: 460 SILNACGHAGLTNDGLVIFNQMIEEN-KVKP 489
            + N     G   DGL + N M ++  K +P
Sbjct: 735 LLSNTYIETGSYEDGLSLRNVMKDQGVKKEP 765



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 139/520 (26%), Positives = 241/520 (46%), Gaps = 54/520 (10%)

Query: 74  MVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------------LFEG 109
           ++ VL   A   ++  A+++HGL++K   E                          +F+ 
Sbjct: 121 LIDVLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAACGVFDE 180

Query: 110 LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALC 169
           +    + S   ++ G   + LF      F     SG++P+      +I+ C+ L S  L 
Sbjct: 181 MPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSLELG 240

Query: 170 ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDF 229
           +++H   +  G    + V+ S+L+MY+ L  ++ +  +F  M   + +SW  M+      
Sbjct: 241 KMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSN 300

Query: 230 EYAGDALKIFREMRKSRIICDTVALLNLISVNAILG---DLKRGKQLHAQVVLGGLQSEL 286
               +A  +F  M+       T  +  L+SV+  +G   D+  GK++       G++  +
Sbjct: 301 GLHLEAFDLFVRMKNGAC---TPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNV 357

Query: 287 RLSNSIIAMYSKCGDLDSSRSVF--NQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
            +  ++I MYSKCG L  +RSVF  N I       W A+ISGY Q+GC++EAL  +++M 
Sbjct: 358 LVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMC 417

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFP-RYRSVQNCLISSYSKCGN 403
           Q    S D  T  S+  A     +L+    +HG+  + G      SV N +  +YSKCG 
Sbjct: 418 QNGITS-DLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGF 476

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           ++    VF+ M   RD+VSW T++  Y  +  GE ALA +  M E G  P+  T+ S+L 
Sbjct: 477 LEDVRKVFDRME-ERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLI 535

Query: 464 ACG-----HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
           +C        G    GL+    +  E  ++ +      ++D+ A+ G +++    AGK+ 
Sbjct: 536 SCASLCFLEYGRQVHGLLCKAGLDTEKCIESA------LIDMYAKCGSITE----AGKVF 585

Query: 519 EGMG-PNI--WRALLSGCVLHVGRFQDAEALRSGSQKKGI 555
           + +  P+I  W A++SG   H G  +DA  L    +  GI
Sbjct: 586 DKISNPDIVSWTAIISGYAQH-GLVEDALQLFRRMELSGI 624


>gi|255591025|ref|XP_002535423.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223523164|gb|EEF26960.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 563

 Score =  270 bits (690), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 155/504 (30%), Positives = 272/504 (53%), Gaps = 34/504 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + L+  Y + G + +A N+F+E+  +++VSW+ +I GYS NG+ +++++ +  + 
Sbjct: 67  DLYIGNALVDMYARFGDLVKARNVFEEMTHRDIVSWNSLISGYSANGYWDEALEIYYELR 126

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPYL------ 115
           ++GL P++FT+  VL A  GL  ++    IHGL+ K G+  D+    GL + Y       
Sbjct: 127 IAGLKPDNFTLSSVLPACGGLLAVKEGEVIHGLVEKLGMNIDVIMSNGLLSMYFKFGRLM 186

Query: 116 --------------VSCNAIVAGFINNKLFQQAVLLF----NFFRGSGLVPNAVTMLTVI 157
                         VS N ++ G+   +LF++++ LF      FR     P+ +T+ +V+
Sbjct: 187 DAQRVFNKMVVKDYVSWNTLICGYCQMELFEESIQLFREMVKRFR-----PDLLTITSVL 241

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
           R C  L      + +H   ++ G+  DV+ +N V+D Y+   DL A+ + F  ++C+D +
Sbjct: 242 RACGLLRDLEFGKFVHDYILRSGIEFDVTASNIVIDTYAKCGDLLASRKAFDRIKCRDSV 301

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           SW  ++  ++     G+ +K+F++M K  +  D++  + L+S++  L D + GK++H  +
Sbjct: 302 SWNTLINGYIQSRSYGEGVKLFKKM-KMDLKPDSITFVTLLSISTRLADTELGKEIHCDL 360

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
              G  S+L +SN+++ MYSKCG++  S  VF  +  + +V+W  II+  VQ      A 
Sbjct: 361 AKLGFDSDLVVSNALVDMYSKCGNVKDSLKVFENMKVRDIVTWNTIIAACVQAEDCTLAF 420

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
               +MR E+    D  TL+ IL     +AA     ++H   F+ GF     V N LI  
Sbjct: 421 RMISQMRNEELIP-DMGTLLGILPICSLIAAKRQGKEVHACTFKFGFESTVPVGNALIEM 479

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           YSKC N+     VFE+M   +DVV+W  ++  YG+ G G+ AL  + +M E G +PD   
Sbjct: 480 YSKCSNLKYCIRVFEDMK-TKDVVTWTALVSAYGMYGEGKKALRAFAEMEEAGIIPDHIA 538

Query: 458 YLSILNACGHAGLTNDGLVIFNQM 481
           +++I+ AC H+G   +GL  F+ M
Sbjct: 539 FVAIIYACSHSGSVEEGLACFDHM 562



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 139/449 (30%), Positives = 235/449 (52%), Gaps = 26/449 (5%)

Query: 39  WSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSI--HGL 96
           W+ VI   + NG   K++  +  M    + P+++T   V+ A A L + E+   +  H L
Sbjct: 1   WNSVIRALTHNGLFSKALDLYFKMKDFNVKPDTYTFPSVINACAALGDFEIGNVVQNHVL 60

Query: 97  MVKFGLE--------------------SDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVL 136
            + FG +                     ++FE + +  +VS N++++G+  N  + +A+ 
Sbjct: 61  EIGFGFDLYIGNALVDMYARFGDLVKARNVFEEMTHRDIVSWNSLISGYSANGYWDEALE 120

Query: 137 LFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYS 196
           ++   R +GL P+  T+ +V+  C  L +    E+IHGL  KLG+ +DV ++N +L MY 
Sbjct: 121 IYYELRIAGLKPDNFTLSSVLPACGGLLAVKEGEVIHGLVEKLGMNIDVIMSNGLLSMYF 180

Query: 197 CLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLN 256
               L  A ++F +M  KD +SW  ++  +   E   +++++FREM K R   D + + +
Sbjct: 181 KFGRLMDAQRVFNKMVVKDYVSWNTLICGYCQMELFEESIQLFREMVK-RFRPDLLTITS 239

Query: 257 LISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKS 316
           ++    +L DL+ GK +H  ++  G++ ++  SN +I  Y+KCGDL +SR  F++I  + 
Sbjct: 240 VLRACGLLRDLEFGKFVHDYILRSGIEFDVTASNIVIDTYAKCGDLLASRKAFDRIKCRD 299

Query: 317 LVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLH 376
            VSW  +I+GY+Q+    E +  F KM+ +     DSIT V++L+ S  LA  E+  ++H
Sbjct: 300 SVSWNTLINGYIQSRSYGEGVKLFKKMKMDLKP--DSITFVTLLSISTRLADTELGKEIH 357

Query: 377 GIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHG 436
               + GF     V N L+  YSKCGNV  +  VFE M  +RD+V+WNTII         
Sbjct: 358 CDLAKLGFDSDLVVSNALVDMYSKCGNVKDSLKVFENMK-VRDIVTWNTIIAACVQAEDC 416

Query: 437 ETALALYHKMTETGEVPDSSTYLSILNAC 465
             A  +  +M     +PD  T L IL  C
Sbjct: 417 TLAFRMISQMRNEELIPDMGTLLGILPIC 445



 Score =  178 bits (451), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 111/390 (28%), Positives = 206/390 (52%), Gaps = 25/390 (6%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           ID   S+ LLS YFK G++ +A+ +F+++  K+ VSW+ +I GY      E+S++ F  M
Sbjct: 167 IDVIMSNGLLSMYFKFGRLMDAQRVFNKMVVKDYVSWNTLICGYCQMELFEESIQLFREM 226

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------- 106
            +    P+  T+  VL A   L++LE  + +H  +++ G+E D+                
Sbjct: 227 -VKRFRPDLLTITSVLRACGLLRDLEFGKFVHDYILRSGIEFDVTASNIVIDTYAKCGDL 285

Query: 107 ------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                 F+ +K    VS N ++ G+I ++ + + V LF   +   L P+++T +T++   
Sbjct: 286 LASRKAFDRIKCRDSVSWNTLINGYIQSRSYGEGVKLFKKMK-MDLKPDSITFVTLLSIS 344

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             L    L + IH    KLG   D+ V+N+++DMYS   ++  ++++F  M+ +D+++W 
Sbjct: 345 TRLADTELGKEIHCDLAKLGFDSDLVVSNALVDMYSKCGNVKDSLKVFENMKVRDIVTWN 404

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++   V  E    A ++  +MR   +I D   LL ++ + +++   ++GK++HA     
Sbjct: 405 TIIAACVQAEDCTLAFRMISQMRNEELIPDMGTLLGILPICSLIAAKRQGKEVHACTFKF 464

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           G +S + + N++I MYSKC +L     VF  +  K +V+WTA++S Y   G  ++AL  F
Sbjct: 465 GFESTVPVGNALIEMYSKCSNLKYCIRVFEDMKTKDVVTWTALVSAYGMYGEGKKALRAF 524

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALE 370
            +M +E     D I  V+I+ A     ++E
Sbjct: 525 AEM-EEAGIIPDHIAFVAIIYACSHSGSVE 553



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 117/423 (27%), Positives = 213/423 (50%), Gaps = 20/423 (4%)

Query: 119 NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIK 178
           N+++    +N LF +A+ L+   +   + P+  T  +VI  C ALG   +  ++    ++
Sbjct: 2   NSVIRALTHNGLFSKALDLYFKMKDFNVKPDTYTFPSVINACAALGDFEIGNVVQNHVLE 61

Query: 179 LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKI 238
           +G   D+ + N+++DMY+   DL  A  +F EM  +D++SW  ++  +    Y  +AL+I
Sbjct: 62  IGFGFDLYIGNALVDMYARFGDLVKARNVFEEMTHRDIVSWNSLISGYSANGYWDEALEI 121

Query: 239 FREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSK 298
           + E+R + +  D   L +++     L  +K G+ +H  V   G+  ++ +SN +++MY K
Sbjct: 122 YYELRIAGLKPDNFTLSSVLPACGGLLAVKEGEVIHGLVEKLGMNIDVIMSNGLLSMYFK 181

Query: 299 CGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVS 358
            G L  ++ VFN++  K  VSW  +I GY Q     E++  F +M   K    D +T+ S
Sbjct: 182 FGRLMDAQRVFNKMVVKDYVSWNTLICGYCQMELFEESIQLFREMV--KRFRPDLLTITS 239

Query: 359 ILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLR 418
           +L A G L  LE    +H     +G     +  N +I +Y+KCG++  +   F+ +   R
Sbjct: 240 VLRACGLLRDLEFGKFVHDYILRSGIEFDVTASNIVIDTYAKCGDLLASRKAFDRIK-CR 298

Query: 419 DVVSWNTIIYGY-GVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVI 477
           D VSWNT+I GY     +GE  + L+ KM +    PDS T++++L+       T  G  I
Sbjct: 299 DSVSWNTLINGYIQSRSYGE-GVKLFKKM-KMDLKPDSITFVTLLSISTRLADTELGKEI 356

Query: 478 FNQMIE---ENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN---IWRALLS 531
              + +   ++ +  S      +VD+ ++ G + D+     K+ E M       W  +++
Sbjct: 357 HCDLAKLGFDSDLVVSN----ALVDMYSKCGNVKDSL----KVFENMKVRDIVTWNTIIA 408

Query: 532 GCV 534
            CV
Sbjct: 409 ACV 411



 Score = 46.2 bits (108), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 6/112 (5%)

Query: 423 WNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMI 482
           WN++I     NG    AL LY KM +    PD+ T+ S++NAC   G    G V+ N ++
Sbjct: 1   WNSVIRALTHNGLFSKALDLYFKMKDFNVKPDTYTFPSVINACAALGDFEIGNVVQNHVL 60

Query: 483 EENKVKPSQEHY--GCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSG 532
           E   +    + Y    +VD+ AR G L  A  +  ++      + W +L+SG
Sbjct: 61  E---IGFGFDLYIGNALVDMYARFGDLVKARNVFEEMTHRDIVS-WNSLISG 108


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  270 bits (689), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 168/555 (30%), Positives = 283/555 (50%), Gaps = 24/555 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + ++ L+  Y K G   +A +LFD IP+++VVSW+ +   Y  +  H +++  F  M+
Sbjct: 44  DEFVANSLVILYAKCGGFGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMV 103

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
           LSG+ PN F++  ++    GL++    R IHG ++K G +SD                  
Sbjct: 104 LSGIRPNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILE 163

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +F+ +  P +VS NAI+AG + ++   +A+ L      SG+ PN  T+ + ++ C 
Sbjct: 164 DASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACA 223

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            +  R L   +H   IK+ +  D  +   ++DMYS    +D A  +F+ M  +D+I+W  
Sbjct: 224 GMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNA 283

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++      E   +A  +F  M    I  +   L  ++   A L      +Q+HA  +  G
Sbjct: 284 VISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSG 343

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
            + +  + NS+I  Y KCG ++ +  VF +     LV +T++++ Y Q+G   EAL  ++
Sbjct: 344 FEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYL 403

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +M Q++    DS    S+L A   L+A E   Q+H    + GF       N L++ Y+KC
Sbjct: 404 EM-QDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKC 462

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G+++ A   F  +  +R +VSW+ +I G   +G+G+ AL L+ +M + G  P+  T +S+
Sbjct: 463 GSIEDASCAFSRIP-VRGIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSV 521

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L AC HAGL  +    FN M     ++P QEHY C++DLL RAG L  A  L  K+    
Sbjct: 522 LCACNHAGLVAEAKHYFNSMKILFGIEPMQEHYACMIDLLGRAGKLEAAMELVNKMPFQA 581

Query: 522 GPNIWRALLSGCVLH 536
              +W ALL    +H
Sbjct: 582 NALVWGALLGAARIH 596



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 152/498 (30%), Positives = 251/498 (50%), Gaps = 28/498 (5%)

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------- 105
           M L G+  N F    VL A    ++L L + +HG++V  G +SD                
Sbjct: 1   MHLLGIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGG 60

Query: 106 ------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                 LF+ + +  +VS NA+ + ++++ +  +AV LF+    SG+ PN  ++ ++I  
Sbjct: 61  FGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINV 120

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C  L        IHG  IKLG   D    N+++DMY+ +  L+ A  +F E+   D++SW
Sbjct: 121 CTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSW 180

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
             ++   V  EY   AL++ REM KS +  +   L + +   A +   + G+QLH+ ++ 
Sbjct: 181 NAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIK 240

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
             + S+  L   +I MYSKC  +D +R VF  + E+ +++W A+ISG+ QN    EA + 
Sbjct: 241 MDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASL 300

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           F  M  E     +  TL ++L +   L A  +C Q+H ++ ++GF     V N LI +Y 
Sbjct: 301 FPLMHTEGI-GFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYG 359

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           KCG+V+ A  VFEE   + D+V + +++  Y  +G GE AL LY +M + G  PDS    
Sbjct: 360 KCGHVEDATRVFEESPIV-DLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCS 418

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYG-CVVDLLARAGCLSDASGLAGKLL 518
           S+LNAC        G  +   +++   +  S    G  +V++ A+ G + DAS  A   +
Sbjct: 419 SLLNACASLSAYEQGKQVHVHILKFGFM--SDIFAGNSLVNMYAKCGSIEDAS-CAFSRI 475

Query: 519 EGMGPNIWRALLSGCVLH 536
              G   W A++ G   H
Sbjct: 476 PVRGIVSWSAMIGGLAQH 493



 Score =  201 bits (511), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 136/513 (26%), Positives = 257/513 (50%), Gaps = 36/513 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D ++++ L+  Y K G +++A ++FDEI + ++VSW+ +I G  ++ +H ++++    M 
Sbjct: 145 DAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMN 204

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG-------------- 109
            SG+ PN FT+   L A AG+   EL R +H  ++K  + SD F G              
Sbjct: 205 KSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMD 264

Query: 110 --------LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                   +    +++ NA+++G   N+  ++A  LF      G+  N  T+ TV++   
Sbjct: 265 DARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIA 324

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
           AL +  +C  IH L++K G   D  V NS++D Y     ++ A ++F E    D++ +T 
Sbjct: 325 ALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTS 384

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++  +       +AL+++ EM+   I  D+    +L++  A L   ++GKQ+H  ++  G
Sbjct: 385 LVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILKFG 444

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
             S++   NS++ MY+KCG ++ +   F++I  + +VSW+A+I G  Q+G  +EAL  F 
Sbjct: 445 FMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSAMIGGLAQHGYGKEALQLFK 504

Query: 342 KMRQEKTDSVDSITLVSILTA---SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
           +M +      + ITLVS+L A   +G +A  +       I F  G    +    C+I   
Sbjct: 505 QMLKVGVPP-NHITLVSVLCACNHAGLVAEAKHYFNSMKILF--GIEPMQEHYACMIDLL 561

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGH---GETALALYHKMTETGEVPDS 455
            + G ++ A  +  +M F  + + W  ++    ++ +   GE A     +M    E   S
Sbjct: 562 GRAGKLEAAMELVNKMPFQANALVWGALLGAARIHKNIDLGEQAA----EMLLALEPEKS 617

Query: 456 STYLSILNACGHAGLTNDGLVIFNQMIEENKVK 488
            T++ + N     G+  D +    +++++ KVK
Sbjct: 618 GTHVLLANIYASVGMW-DKVARVRRLMKDGKVK 649



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/195 (31%), Positives = 97/195 (49%), Gaps = 13/195 (6%)

Query: 358 SILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFL 417
           S+L A      L +  Q+HGI    GF     V N L+  Y+KCG    A  +F+ +   
Sbjct: 15  SVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDARSLFDAIPD- 73

Query: 418 RDVVSWNTIIYGY-GVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLV 476
           R VVSWN +   Y   + HGE A++L+H M  +G  P+  +  S++N C     +  G  
Sbjct: 74  RSVVSWNALFSCYVHSDMHGE-AVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQGRK 132

Query: 477 IFNQMIEENKVKPSQEHYGC--VVDLLARAGCLSDASGLAGKLLEGMGPNI--WRALLSG 532
           I   +I   K+    + +    +VD+ A+ G L DAS +  ++ +   P+I  W A+++G
Sbjct: 133 IHGYLI---KLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAK---PDIVSWNAIIAG 186

Query: 533 CVLHVGRFQDAEALR 547
           CVLH    +  E LR
Sbjct: 187 CVLHEYHHRALELLR 201


>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
 gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  270 bits (689), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 176/635 (27%), Positives = 301/635 (47%), Gaps = 125/635 (19%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           ++L+  Y K G +++   +FD++P++N+ +W+ V+ G +  GF +++             
Sbjct: 59  NRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEA------------- 105

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINN 128
                                                LF  +      + N++V+GF  +
Sbjct: 106 -----------------------------------DSLFRSMPERDQCTWNSMVSGFAQH 130

Query: 129 KLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVN 188
              ++A+  F      G V N  +  +V+  C  L        +H L  K   + DV + 
Sbjct: 131 DRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIG 190

Query: 189 NSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRII 248
           ++++DMYS   +++ A ++F EM  ++V+SW  ++  F     A +AL +F+ M +SR+ 
Sbjct: 191 SALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVE 250

Query: 249 CDTVALLNLISVNAILGDLKRGKQLHAQVVLGG-LQSELRLSNSIIAMYSKCGDLDSSRS 307
            D V L ++IS  A L  +K G+++H +VV    L++++ LSN+ + MY+KC  +  +R 
Sbjct: 251 PDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARF 310

Query: 308 VFN-------------------------------QITEKSLVSWTAIISGYVQNGCAREA 336
           +F+                               ++ E+++VSW A+I+GY QNG   EA
Sbjct: 311 IFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEA 370

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQL------HGIAFEAGFPRYRSV 390
           L+ F  +++E        +  +IL A  +LA L + +Q       HG  F++G      V
Sbjct: 371 LSLFCLLKRESV-CPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFV 429

Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
            N LI  Y KCG V+  Y+VF +M   RD VSWN +I G+  NG+G  AL L+ +M E+G
Sbjct: 430 GNSLIDMYVKCGCVEEGYLVFRKM-MERDCVSWNAMIIGFAQNGYGNEALELFREMLESG 488

Query: 451 EVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
           E PD  T + +L+ACGHAG   +G   F+ M  +  V P ++HY C+VDLL RAG L +A
Sbjct: 489 EKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEA 548

Query: 511 SGLAGKLLEGMGPN--IWRALLSGCVLH-------------------------------- 536
             +  ++   M P+  IW +LL+ C +H                                
Sbjct: 549 KSMIEEM--PMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYA 606

Query: 537 -VGRFQDAEALRSGSQKKGIIKIPGISFLNSTSRD 570
            +G+++D   +R   +K+G+ K PG S++     D
Sbjct: 607 ELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHD 641



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 130/551 (23%), Positives = 243/551 (44%), Gaps = 67/551 (12%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  + Y  + +++   K G + EA++LF  +PE++  +W+ ++ G++ +   E+++  F+
Sbjct: 82  PQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFA 141

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--------------- 105
            M   G + N ++   VL A +GL ++     +H L+ K    SD               
Sbjct: 142 MMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCG 201

Query: 106 -------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                  +F+ + +  +VS N+++  F  N    +A+ +F     S + P+ VT+ +VI 
Sbjct: 202 NVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVIS 261

Query: 159 GCVALGSRALCELIHGLTIKLG-LILDVSVNNSVLDM----------------------- 194
            C +L +  + + +HG  +K   L  D+ ++N+ +DM                       
Sbjct: 262 ACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVI 321

Query: 195 --------YSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSR 246
                   Y+      AA  +F +M  ++V+SW  ++  +       +AL +F  +++  
Sbjct: 322 AETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRES 381

Query: 247 IICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL------QSELRLSNSIIAMYSKCG 300
           +     +  N++   A L +L  G Q H  V+  G       + ++ + NS+I MY KCG
Sbjct: 382 VCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCG 441

Query: 301 DLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSIL 360
            ++    VF ++ E+  VSW A+I G+ QNG   EAL  F +M  E  +  D IT++ +L
Sbjct: 442 CVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREML-ESGEKPDHITMIGVL 500

Query: 361 TASGELAALEICLQ-LHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRD 419
           +A G    +E        +  + G    R    C++    + G ++ A  + EEM    D
Sbjct: 501 SACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPD 560

Query: 420 VVSWNTIIYGYGVNGHGETALALY--HKMTETGEVPDSSTYLSILNACGHAGLTNDGLVI 477
            V W +++    V  H    L  Y   K+ E  E  +S  Y+ + N     G   D + +
Sbjct: 561 SVIWGSLLAACKV--HRNITLGKYVAEKLLEV-EPSNSGPYVLLSNMYAELGKWEDVMNV 617

Query: 478 FNQMIEENKVK 488
              M +E   K
Sbjct: 618 RKSMRKEGVTK 628



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 132/271 (48%), Gaps = 33/271 (12%)

Query: 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAI------- 323
           + +HA V+  G  +E+ + N +I  YSKCG L+  R VF+++ ++++ +W ++       
Sbjct: 40  RYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKL 99

Query: 324 ------------------------ISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSI 359
                                   +SG+ Q+    EAL  F  M +E    ++  +  S+
Sbjct: 100 GFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGF-VLNEYSFASV 158

Query: 360 LTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRD 419
           L+A   L  +   +Q+H +  ++ F     + + L+  YSKCGNV+ A  VF+EMG  R+
Sbjct: 159 LSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMG-DRN 217

Query: 420 VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFN 479
           VVSWN++I  +  NG    AL ++  M E+   PD  T  S+++AC        G  +  
Sbjct: 218 VVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHG 277

Query: 480 QMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
           ++++ +K++         VD+ A+   + +A
Sbjct: 278 RVVKNDKLRNDIILSNAFVDMYAKCSRIKEA 308


>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Glycine max]
          Length = 785

 Score =  270 bits (689), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 170/560 (30%), Positives = 289/560 (51%), Gaps = 33/560 (5%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           ID    +KL+  Y   G + +   +FD I    +  W++++  Y+  G + +S+  F  M
Sbjct: 90  IDEVLGAKLVFMYVNCGDLVKGRRIFDGILNDKIFLWNLLMSEYAKIGNYRESVGLFEKM 149

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
              G+  +S+T   VL   A    +   + +HG ++K G  S                  
Sbjct: 150 QELGIRGDSYTFTCVLKGFAASAKVRECKRVHGYVLKLGFGSYNAVVNSLIAAYFKCGEV 209

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                LF+ L +  +VS N++++G   N   +  +  F      G+  ++ T++ V+  C
Sbjct: 210 ESARILFDELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVAC 269

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             +G+  L   +H   +K G    V  NN++LDMYS   +L+ A ++F +M    ++SWT
Sbjct: 270 ANVGNLTLGRALHAYGVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWT 329

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++   V      +A+ +F EM+   +  D  A+ +++   A    L +G+++H  +   
Sbjct: 330 SIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGREVHNHIKKN 389

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
            + S L +SN+++ MY+KCG ++ +  +F+Q+  K++VSW  +I GY QN    EAL  F
Sbjct: 390 NMGSNLPVSNALMNMYAKCGSMEEANLIFSQLPVKNIVSWNTMIGGYSQNSLPNEALQLF 449

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
           + M+++     D +T+  +L A   LAALE   ++HG     G+     V   L+  Y K
Sbjct: 450 LDMQKQLKP--DDVTMACVLPACAGLAALEKGREIHGHILRKGYFSDLHVACALVDMYVK 507

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CG + LA  +F +M   +D++ W  +I GYG++G G+ A++ + KM   G  P+ S++ S
Sbjct: 508 CGLLVLAQQLF-DMIPKKDMILWTVMIAGYGMHGFGKEAISTFEKMRVAGIEPEESSFTS 566

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           IL AC H+GL  +G  +F+ M  E  ++P  EHY C+VDLL R+G LS A     K +E 
Sbjct: 567 ILYACTHSGLLKEGWKLFDSMKSECNIEPKLEHYACMVDLLIRSGNLSRAY----KFIET 622

Query: 521 M--GPN--IWRALLSGCVLH 536
           M   P+  IW ALLSGC +H
Sbjct: 623 MPIKPDAAIWGALLSGCRIH 642



 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 129/482 (26%), Positives = 244/482 (50%), Gaps = 29/482 (6%)

Query: 6   YNS--SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           YN+  + L++ YFK G+++ A  LFDE+ +++VVSW+ +I G ++NGF    ++ F  M+
Sbjct: 192 YNAVVNSLIAAYFKCGEVESARILFDELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQML 251

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE-------------------- 103
             G+  +S T+V VLVA A + NL L R++H   VK G                      
Sbjct: 252 NLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVKAGFSGGVMFNNTLLDMYSKCGNLN 311

Query: 104 --SDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
             +++F  +    +VS  +I+A  +   L  +A+ LF+  +  GL P+   + +V+  C 
Sbjct: 312 GANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACA 371

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
              S      +H    K  +  ++ V+N++++MY+    ++ A  IF ++  K+++SW  
Sbjct: 372 CSNSLDKGREVHNHIKKNNMGSNLPVSNALMNMYAKCGSMEEANLIFSQLPVKNIVSWNT 431

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+G +       +AL++F +M+K ++  D V +  ++   A L  L++G+++H  ++  G
Sbjct: 432 MIGGYSQNSLPNEALQLFLDMQK-QLKPDDVTMACVLPACAGLAALEKGREIHGHILRKG 490

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
             S+L ++ +++ MY KCG L  ++ +F+ I +K ++ WT +I+GY  +G  +EA++ F 
Sbjct: 491 YFSDLHVACALVDMYVKCGLLVLAQQLFDMIPKKDMILWTVMIAGYGMHGFGKEAISTFE 550

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQL-HGIAFEAGFPRYRSVQNCLISSYSK 400
           KMR    +  +S +  SIL A      L+   +L   +  E           C++    +
Sbjct: 551 KMRVAGIEPEES-SFTSILYACTHSGLLKEGWKLFDSMKSECNIEPKLEHYACMVDLLIR 609

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
            GN+  AY   E M    D   W  ++ G  ++   E A  +   + E    P+++ Y  
Sbjct: 610 SGNLSRAYKFIETMPIKPDAAIWGALLSGCRIHHDVELAEKVAEHIFELE--PENTRYYV 667

Query: 461 IL 462
           +L
Sbjct: 668 LL 669



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 113/411 (27%), Positives = 202/411 (49%), Gaps = 5/411 (1%)

Query: 101 GLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
           G+ + L E   N   V  NA +  F      + A+ L +  + S L  N  T  +V++ C
Sbjct: 10  GVSATLSETTHNNVTVDKNAKICKFCEMGDLRNAMKLLSRSQRSELELN--TYCSVLQLC 67

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             L S    + +H +    G+ +D  +   ++ MY    DL    +IF  +    +  W 
Sbjct: 68  AELKSLEDGKRVHSIISSNGMAIDEVLGAKLVFMYVNCGDLVKGRRIFDGILNDKIFLWN 127

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            +M  +       +++ +F +M++  I  D+     ++   A    ++  K++H  V+  
Sbjct: 128 LLMSEYAKIGNYRESVGLFEKMQELGIRGDSYTFTCVLKGFAASAKVRECKRVHGYVLKL 187

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           G  S   + NS+IA Y KCG+++S+R +F++++++ +VSW ++ISG   NG +R  L  F
Sbjct: 188 GFGSYNAVVNSLIAAYFKCGEVESARILFDELSDRDVVSWNSMISGCTMNGFSRNGLEFF 247

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
           I+M     D VDS TLV++L A   +  L +   LH    +AGF       N L+  YSK
Sbjct: 248 IQMLNLGVD-VDSATLVNVLVACANVGNLTLGRALHAYGVKAGFSGGVMFNNTLLDMYSK 306

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CGN++ A  VF +MG    +VSW +II  +   G    A+ L+ +M   G  PD     S
Sbjct: 307 CGNLNGANEVFVKMG-ETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTS 365

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDAS 511
           +++AC  +   + G  + N  I++N +  +      ++++ A+ G + +A+
Sbjct: 366 VVHACACSNSLDKGREVHNH-IKKNNMGSNLPVSNALMNMYAKCGSMEEAN 415


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  270 bits (689), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 176/609 (28%), Positives = 301/609 (49%), Gaps = 61/609 (10%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM-LSGL 67
           ++L++ Y   G +  +   F  I  KN+ SW+ ++  Y   G +  SM   + ++ LSG+
Sbjct: 87  TQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMVSAYVRRGRYRDSMDCVTELLSLSGV 146

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVS---------- 117
            P+ +T   VL A   L + E    +H  ++K G E D++      +L S          
Sbjct: 147 RPDFYTFPPVLKACLSLADGE---KMHCWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHK 203

Query: 118 ------------CNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
                        NA+++GF  N    +A+ + +  +   +  + VT+ +++  C     
Sbjct: 204 VFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSND 263

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
                L+H   IK GL  DV V+N++++MYS    L  A ++F  ME +D++SW  ++  
Sbjct: 264 VVGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAA 323

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV-LGGLQS 284
           +   +    AL  F+EM    +  D + +++L S+   L D + G+ +H  VV    L+ 
Sbjct: 324 YEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEV 383

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           ++ + N+++ MY+K G +D +R+VF Q+  + ++SW  +I+GY QNG A EA++ +  M 
Sbjct: 384 DIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMME 443

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
           + +T   +  T VSIL A   + AL+  +++HG   +        V  CLI  Y KCG +
Sbjct: 444 EGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLIKNCLFLDVFVATCLIDMYGKCGRL 503

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           + A  +F E+      V WN II   G++GHGE AL L+  M   G   D  T++S+L+A
Sbjct: 504 EDAMSLFYEIP-QETSVPWNAIISSLGIHGHGEKALQLFKDMRADGVKADHITFVSLLSA 562

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C H+GL ++    F+ M +E ++KP+ +HYGC+VDL  RAG L  A  L   +      +
Sbjct: 563 CSHSGLVDEAQWCFDTMQKEYRIKPNLKHYGCMVDLFGRAGYLEKAYNLVSNMPIQADAS 622

Query: 525 IWRALLSGCVLH---------------------------------VGRFQDAEALRSGSQ 551
           IW  LL+ C +H                                 VG+++ A  +RS ++
Sbjct: 623 IWGTLLAACRIHGNAELGTFASDRLLEVDSENVGYYVLLSNIYANVGKWEGAVKVRSLAR 682

Query: 552 KKGIIKIPG 560
            +G+ K PG
Sbjct: 683 DRGLRKTPG 691



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 114/466 (24%), Positives = 229/466 (49%), Gaps = 40/466 (8%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y ++ L+  Y + G ++ A  +F ++P ++V SW+ +I G+  NG   ++++    M 
Sbjct: 181 DVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMK 240

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
              +  ++ T+  +L   A   ++     +H  ++K GLESD                  
Sbjct: 241 TEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQ 300

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +F+G++   LVS N+I+A +  N     A+  F      G+ P+ +T++++     
Sbjct: 301 DAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFG 360

Query: 162 ALGSRALCELIHGLTIKL-GLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
            L  R +   +HG  ++   L +D+ + N++++MY+ L  +D A  +F ++  +DVISW 
Sbjct: 361 QLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWN 420

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSR-IICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
            ++  +     A +A+  +  M + R I+ +    ++++   + +G L++G ++H +++ 
Sbjct: 421 TLITGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLIK 480

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
             L  ++ ++  +I MY KCG L+ + S+F +I +++ V W AIIS    +G   +AL  
Sbjct: 481 NCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQETSVPWNAIISSLGIHGHGEKALQL 540

Query: 340 FIKMRQEKTDSVDSITLVSILTA---SGELAALEICLQLHGIAFEAGFPRYRSVQN---- 392
           F  MR +   + D IT VS+L+A   SG +   + C       F+     YR   N    
Sbjct: 541 FKDMRADGVKA-DHITFVSLLSACSHSGLVDEAQWC-------FDTMQKEYRIKPNLKHY 592

Query: 393 -CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGE 437
            C++  + + G ++ AY +   M    D   W T++    ++G+ E
Sbjct: 593 GCMVDLFGRAGYLEKAYNLVSNMPIQADASIWGTLLAACRIHGNAE 638



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 88/378 (23%), Positives = 177/378 (46%), Gaps = 38/378 (10%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + S+ L++ Y K G++++A+ +FD +  +++VSW+ +I  Y  N     ++  F  M+
Sbjct: 282 DVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEML 341

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK-FGLESDL---------------- 106
             G+ P+  T+V +      L +  + R++HG +V+   LE D+                
Sbjct: 342 FVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSI 401

Query: 107 ------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFF-RGSGLVPNAVTMLTVIRG 159
                 FE L +  ++S N ++ G+  N L  +A+  +N    G  +VPN  T ++++  
Sbjct: 402 DCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPA 461

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
              +G+      IHG  IK  L LDV V   ++DMY     L+ A+ +F E+  +  + W
Sbjct: 462 YSHVGALQQGMKIHGRLIKNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQETSVPW 521

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
             ++       +   AL++F++MR   +  D +  ++L+S  +  G +       AQ   
Sbjct: 522 NAIISSLGIHGHGEKALQLFKDMRADGVKADHITFVSLLSACSHSGLVDE-----AQWCF 576

Query: 280 GGLQSELRLSNSI------IAMYSKCGDLDSSRSVFNQITEKSLVS-WTAIISGYVQNGC 332
             +Q E R+  ++      + ++ + G L+ + ++ + +  ++  S W  +++    +G 
Sbjct: 577 DTMQKEYRIKPNLKHYGCMVDLFGRAGYLEKAYNLVSNMPIQADASIWGTLLAACRIHGN 636

Query: 333 AREALNQFIKMRQEKTDS 350
           A   L  F   R  + DS
Sbjct: 637 AE--LGTFASDRLLEVDS 652



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 131/256 (51%), Gaps = 17/256 (6%)

Query: 270 GKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQ 329
            KQLHA +++ G   ++ L   ++ +Y+  GDL  S + F  I  K++ SW +++S YV+
Sbjct: 67  AKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMVSAYVR 126

Query: 330 NGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS 389
            G  R++++   ++        D  T   +L A   LA  E   ++H    + GF     
Sbjct: 127 RGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLADGE---KMHCWVLKMGFEHDVY 183

Query: 390 VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
           V   LI  YS+ G V++A+ VF +M  +RDV SWN +I G+  NG+   AL +  +M +T
Sbjct: 184 VAASLIHLYSRFGAVEVAHKVFVDMP-VRDVGSWNAMISGFCQNGNVAEALRVLDRM-KT 241

Query: 450 GEVP-DSSTYLSILNACGHAGLTNDGLVIFNQMIE---ENKVKPSQEHYGCVVDLLARAG 505
            EV  D+ T  S+L  C  +     G+++   +I+   E+ V  S      ++++ ++ G
Sbjct: 242 EEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSN----ALINMYSKFG 297

Query: 506 CLSDASGLAGKLLEGM 521
            L DA     ++ +GM
Sbjct: 298 RLQDAQ----RVFDGM 309



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 47/80 (58%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D + ++ L+  Y K G++++A +LF EIP++  V W+ +I    I+G  EK+++ F  M
Sbjct: 485 LDVFVATCLIDMYGKCGRLEDAMSLFYEIPQETSVPWNAIISSLGIHGHGEKALQLFKDM 544

Query: 63  MLSGLLPNSFTMVGVLVAAA 82
              G+  +  T V +L A +
Sbjct: 545 RADGVKADHITFVSLLSACS 564


>gi|413932452|gb|AFW67003.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 719

 Score =  270 bits (689), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 177/562 (31%), Positives = 276/562 (49%), Gaps = 39/562 (6%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  D     K L    KSG++ +A +LFD +P KNVV+W+  I G + NG  E +   F+
Sbjct: 66  PPPDVVLDCKRLDGLMKSGRLGDALDLFDRMPRKNVVAWTTAISGCTRNGRPEAAATMFA 125

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--------------- 105
            M+ SG+ PN F     L A A    L L   +H L V+ G  +D               
Sbjct: 126 DMLESGVAPNDFACNAALAACAAAGALGLGEQVHSLAVRAGFAADAWIGSCLIELYSRCG 185

Query: 106 -------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                  +F  ++ P +V   ++V+    N    +AV +       GL PN  TM +++ 
Sbjct: 186 SLRAAEEVFRRMEAPDVVGYTSLVSALCRNGELARAVDVLCQMTRQGLQPNEHTMTSMLA 245

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C     R + E IHG  +K+     V  + +++D YS   D   A  +F  +E K+V+S
Sbjct: 246 EC----PRGIGEQIHGYMLKVMGSQSVYASTALIDFYSRYGDFGTAKTVFENLESKNVVS 301

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           W  MM L +      DAL++F EM    +  +  A    +S     G +  G+Q+H   +
Sbjct: 302 WCSMMQLCIRDGRLDDALRVFSEMISEGVQPNEFAFSIALSA---CGSVCLGRQIHCSAI 358

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
              L +++R+SN++++MY + G +    +V  +I    LVSWTA IS   QNG + +A+ 
Sbjct: 359 KRDLMTDIRVSNALLSMYGRSGFVSELEAVLGKIENPDLVSWTAAISANFQNGFSEKAVA 418

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
             ++M  E     D     S L++  +LA L    QLH +A + G        N LI+ Y
Sbjct: 419 LLLQMHSEGFTPND-YAFSSGLSSCADLALLHQGRQLHCLALKLGCDFKVCTGNALINMY 477

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
           SKCG +  A + F+ M    DV+SWN++I+G   +G    AL  + +M  +   PD ST+
Sbjct: 478 SKCGRIGSARLAFDVMD-THDVMSWNSLIHGLAQHGDANLALETFSEMCSSDWRPDDSTF 536

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
           LS+L  C HAGL  +G   F QM +   + P+  HY C++D+L R G  ++A     +++
Sbjct: 537 LSVLVGCNHAGLVKEGETFFRQMTDRYGLTPTPSHYACMIDMLGRNGRFAEAL----RMI 592

Query: 519 EGMG--PN--IWRALLSGCVLH 536
           E M   P+  IW+ LL+ C LH
Sbjct: 593 ENMPFEPDVLIWKTLLASCKLH 614



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 118/483 (24%), Positives = 205/483 (42%), Gaps = 32/483 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  S L+  Y + G ++ AE +F  +   +VV ++ ++     NG   +++     M 
Sbjct: 170 DAWIGSCLIELYSRCGSLRAAEEVFRRMEAPDVVGYTSLVSALCRNGELARAVDVLCQMT 229

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK----------------------FG 101
             GL PN  TM  +L          +   IHG M+K                      FG
Sbjct: 230 RQGLQPNEHTMTSMLAECP----RGIGEQIHGYMLKVMGSQSVYASTALIDFYSRYGDFG 285

Query: 102 LESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +FE L++  +VS  +++   I +     A+ +F+     G+ PN       +  C 
Sbjct: 286 TAKTVFENLESKNVVSWCSMMQLCIRDGRLDDALRVFSEMISEGVQPNEFAFSIALSAC- 344

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
             GS  L   IH   IK  L+ D+ V+N++L MY     +     +  ++E  D++SWT 
Sbjct: 345 --GSVCLGRQIHCSAIKRDLMTDIRVSNALLSMYGRSGFVSELEAVLGKIENPDLVSWTA 402

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
            +       ++  A+ +  +M       +  A  + +S  A L  L +G+QLH   +  G
Sbjct: 403 AISANFQNGFSEKAVALLLQMHSEGFTPNDYAFSSGLSSCADLALLHQGRQLHCLALKLG 462

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
              ++   N++I MYSKCG + S+R  F+ +    ++SW ++I G  Q+G A  AL  F 
Sbjct: 463 CDFKVCTGNALINMYSKCGRIGSARLAFDVMDTHDVMSWNSLIHGLAQHGDANLALETFS 522

Query: 342 KMRQEKTDSVDSITLVSILTASGELAAL-EICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
           +M        DS T +S+L        + E       +    G     S   C+I    +
Sbjct: 523 EMCSSDWRPDDS-TFLSVLVGCNHAGLVKEGETFFRQMTDRYGLTPTPSHYACMIDMLGR 581

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
            G    A  + E M F  DV+ W T++    ++ + +       K+ E  E  DS++Y+ 
Sbjct: 582 NGRFAEALRMIENMPFEPDVLIWKTLLASCKLHRNLDIGKLAADKLMELSER-DSASYVL 640

Query: 461 ILN 463
           + N
Sbjct: 641 MSN 643


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  269 bits (688), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 171/534 (32%), Positives = 287/534 (53%), Gaps = 34/534 (6%)

Query: 33  EKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARS 92
           ++++VSWS +I  Y+ N    +++ AF  M+  G  PN +   GV  A +  +N+ L + 
Sbjct: 4   KRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKI 63

Query: 93  IHGLMVKFG-LESDL-----------------------FEGLKNPYLVSCNAIVAGFINN 128
           I G ++K G  ESD+                       F+ + +  +V+   ++  F   
Sbjct: 64  IFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQL 123

Query: 129 KLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVN 188
              + AV LF     SG VP+  T+  V+  C  +G  +L    H L +K GL LDV V 
Sbjct: 124 GFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVG 183

Query: 189 NSVLDMYS-CLMD--LDAAIQIFREMECKDVISWTRMMGLFVDFEYAG---DALKIFREM 242
            S++DMY+ C+ D  +D A ++F  M   +V+SWT ++  +V  +  G   +A+++F EM
Sbjct: 184 CSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYV--QSGGCDREAIELFLEM 241

Query: 243 RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDL 302
            + ++  +     +++   A L D+  G+Q++A VV   L S   + NS+I+MYS+CG++
Sbjct: 242 VQGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNM 301

Query: 303 DSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTA 362
           +++R  F+ + EK+LVS+  I++ Y ++  + EA   F ++    T  V++ T  S+L+ 
Sbjct: 302 ENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGT-GVNAFTFASLLSG 360

Query: 363 SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVS 422
           +  + A+    Q+H    ++GF     + N LIS YS+CGN++ A+ VF EMG   +V+S
Sbjct: 361 ASSIGAIGKGEQIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMG-DGNVIS 419

Query: 423 WNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMI 482
           W ++I G+  +G    AL  +HKM E G  P+  TY+++L+AC H GL ++GL  F  M 
Sbjct: 420 WTSMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMK 479

Query: 483 EENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
            E+ + P  EHY CVVDLL R+G L +A  L   +       + R  L  C +H
Sbjct: 480 VEHGIVPRMEHYACVVDLLGRSGHLEEAMELVNSMPFKADALVLRTFLGACRVH 533



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 125/501 (24%), Positives = 255/501 (50%), Gaps = 31/501 (6%)

Query: 18  SGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGV 77
           +G ++ A  +FD +P++NVV+W+++I  +   GF   ++  F  M+LSG +P+ FT+ GV
Sbjct: 92  NGDLESAYKVFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYVPDRFTLSGV 151

Query: 78  LVAAAGLQNLELARSIHGLMVKFGLESDL-------------------------FEGLKN 112
           + A A +  L L R  H L++K GL+ D+                         F+ +  
Sbjct: 152 VSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPV 211

Query: 113 PYLVSCNAIVAGFINNK-LFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCEL 171
             ++S  AI+ G++ +    ++A+ LF       + PN  T  +V++ C  L    L E 
Sbjct: 212 HNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQ 271

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           ++ L +K+ L     V NS++ MYS   +++ A + F  +  K+++S+  ++  +     
Sbjct: 272 VYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLN 331

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
           + +A ++F E+  +    +     +L+S  + +G + +G+Q+H++++  G +S L + N+
Sbjct: 332 SEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFKSNLHICNA 391

Query: 292 IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
           +I+MYS+CG+++++  VFN++ + +++SWT++I+G+ ++G A  AL  F KM +    S 
Sbjct: 392 LISMYSRCGNIEAAFQVFNEMGDGNVISWTSMITGFAKHGFATRALETFHKMLEAGV-SP 450

Query: 352 DSITLVSILTASGELAALEICLQ-LHGIAFEAGF-PRYRSVQNCLISSYSKCGNVDLAYI 409
           + +T +++L+A   +  +   L+    +  E G  PR      C++    + G+++ A  
Sbjct: 451 NEVTYIAVLSACSHVGLISEGLKHFKSMKVEHGIVPRMEHYA-CVVDLLGRSGHLEEAME 509

Query: 410 VFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAG 469
           +   M F  D +   T +    V+G+ +        + E  +  D + Y+ + N    AG
Sbjct: 510 LVNSMPFKADALVLRTFLGACRVHGNMDLGKHAAEMILEQ-DPHDPAAYILLSNLHASAG 568

Query: 470 LTNDGLVIFNQMIEENKVKPS 490
              +   I  +M E N  K +
Sbjct: 569 QWEEVAEIRKKMKERNLTKEA 589



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 103/215 (47%), Gaps = 32/215 (14%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+S Y + G ++ A   FD + EKN+VS++ +++ Y+ +   E++ + F+ +  +G   N
Sbjct: 291 LISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVN 350

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------------FE 108
           +FT   +L  A+ +  +     IH  ++K G +S+L                      F 
Sbjct: 351 AFTFASLLSGASSIGAIGKGEQIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFN 410

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC--VALGSR 166
            + +  ++S  +++ GF  +    +A+  F+    +G+ PN VT + V+  C  V L S 
Sbjct: 411 EMGDGNVISWTSMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISE 470

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDL 201
            L +    + ++ G++         ++ Y+C++DL
Sbjct: 471 GL-KHFKSMKVEHGIV-------PRMEHYACVVDL 497



 Score = 39.7 bits (91), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 35/70 (50%)

Query: 414 MGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTND 473
           MG  RD+VSW+ +I  Y  N     A++ +  M E G  P+   +  +  AC +    + 
Sbjct: 1   MGNKRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISL 60

Query: 474 GLVIFNQMIE 483
           G +IF  +++
Sbjct: 61  GKIIFGFLLK 70


>gi|357132450|ref|XP_003567843.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Brachypodium distachyon]
          Length = 868

 Score =  269 bits (688), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 160/548 (29%), Positives = 282/548 (51%), Gaps = 25/548 (4%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           +LS   + G+   A  +F ++PE++V SW++++ GY   GF E+++  +  M+ +G  P+
Sbjct: 135 MLSMLVRFGETWHAWKVFAKMPERDVFSWNVMVGGYGKAGFLEEALDLYHRMLWAGARPD 194

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGL--ESDL--------------------FE 108
            +T   VL +  G+ +L + R +H  +++FGL  E D+                    F+
Sbjct: 195 VYTFPCVLRSCGGVPDLTMGREVHAHVLRFGLGVEVDVLNALVTMYAKCGDVEAARKVFD 254

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
           G+     +S NA++AG   N   +  + LF       + PN +T+ +V      L     
Sbjct: 255 GMSLTDCISWNAMIAGHFENHECEAGLELFLHMLEDEVEPNLMTITSVTVASGLLSDLDF 314

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
            + IH L +K G   DV+  NS++ MYS L  +  A  +F  ME +D +SWT M+  +  
Sbjct: 315 AKEIHALAVKRGFATDVAFCNSLIQMYSSLGRMGEACTVFSRMETRDAMSWTAMISGYEK 374

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
             +   AL+++  M  + +  D V + + ++  A LG L  G +LH      G    + +
Sbjct: 375 NGFPDKALEVYALMEVNNVSPDDVTVASALAACASLGRLDVGIKLHELATSKGFIRYIVV 434

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
           +N+++ MY+K   ++ +  VF  + +K ++SW+++I+G+  N    EAL  F  M  +  
Sbjct: 435 ANALVEMYAKSKIIEKAIEVFKYMPDKDVISWSSMIAGFCFNHKNFEALYYFRHMLADVK 494

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
              +S+T ++ L A     +L    ++H      G      V N L+  Y KCG    A+
Sbjct: 495 P--NSVTFIAALAACAATGSLRCGKEIHAHVLRQGIASEGYVPNALLDLYVKCGQTGYAW 552

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
             F   G  +DVVSWN ++ G+  +GHG+ AL+ +++M ETGE PD  T++++L  C  A
Sbjct: 553 AQFGAHG-TKDVVSWNIMLAGFVAHGHGDIALSFFNEMLETGEHPDEVTFVALLCGCSRA 611

Query: 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRA 528
           G+ + G  +F+ M E+  + P+ +HY C+VDLL+R G L++      ++       +W A
Sbjct: 612 GMVSQGWELFHSMTEKYSIVPNLKHYACMVDLLSRVGRLTEGYNFINRMPITPDAAVWGA 671

Query: 529 LLSGCVLH 536
           LL+GC +H
Sbjct: 672 LLNGCRIH 679



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 109/383 (28%), Positives = 196/383 (51%), Gaps = 6/383 (1%)

Query: 80  AAAGLQNLELARSIHGLMVKFG---LESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVL 136
           AA G   L L  ++  ++V+FG       +F  +    + S N +V G+      ++A+ 
Sbjct: 122 AAHGTFGLRLGNAMLSMLVRFGETWHAWKVFAKMPERDVFSWNVMVGGYGKAGFLEEALD 181

Query: 137 LFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYS 196
           L++    +G  P+  T   V+R C  +    +   +H   ++ GL ++V V N+++ MY+
Sbjct: 182 LYHRMLWAGARPDVYTFPCVLRSCGGVPDLTMGREVHAHVLRFGLGVEVDVLNALVTMYA 241

Query: 197 CLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLN 256
              D++AA ++F  M   D ISW  M+    +       L++F  M +  +  + + + +
Sbjct: 242 KCGDVEAARKVFDGMSLTDCISWNAMIAGHFENHECEAGLELFLHMLEDEVEPNLMTITS 301

Query: 257 LISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKS 316
           +   + +L DL   K++HA  V  G  +++   NS+I MYS  G +  + +VF+++  + 
Sbjct: 302 VTVASGLLSDLDFAKEIHALAVKRGFATDVAFCNSLIQMYSSLGRMGEACTVFSRMETRD 361

Query: 317 LVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLH 376
            +SWTA+ISGY +NG   +AL  +  M      S D +T+ S L A   L  L++ ++LH
Sbjct: 362 AMSWTAMISGYEKNGFPDKALEVYALMEVNNV-SPDDVTVASALAACASLGRLDVGIKLH 420

Query: 377 GIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHG 436
            +A   GF RY  V N L+  Y+K   ++ A  VF+ M   +DV+SW+++I G+  N   
Sbjct: 421 ELATSKGFIRYIVVANALVEMYAKSKIIEKAIEVFKYMPD-KDVISWSSMIAGFCFNHKN 479

Query: 437 ETALALYHKMTETGEVPDSSTYL 459
             AL  +  M    + P+S T++
Sbjct: 480 FEALYYFRHMLADVK-PNSVTFI 501



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 84/350 (24%), Positives = 161/350 (46%), Gaps = 34/350 (9%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + L+  Y   G++ EA  +F  +  ++ +SW+ +I GY  NGF +K+++ ++ M ++ + 
Sbjct: 335 NSLIQMYSSLGRMGEACTVFSRMETRDAMSWTAMISGYEKNGFPDKALEVYALMEVNNVS 394

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL----------------------ESDL 106
           P+  T+   L A A L  L++   +H L    G                         ++
Sbjct: 395 PDDVTVASALAACASLGRLDVGIKLHELATSKGFIRYIVVANALVEMYAKSKIIEKAIEV 454

Query: 107 FEGLKNPYLVSCNAIVAGF-INNKLFQQAVLLFNFFRG--SGLVPNAVTMLTVIRGCVAL 163
           F+ + +  ++S ++++AGF  N+K F+       +FR   + + PN+VT +  +  C A 
Sbjct: 455 FKYMPDKDVISWSSMIAGFCFNHKNFEA----LYYFRHMLADVKPNSVTFIAALAACAAT 510

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
           GS    + IH   ++ G+  +  V N++LD+Y        A   F     KDV+SW  M+
Sbjct: 511 GSLRCGKEIHAHVLRQGIASEGYVPNALLDLYVKCGQTGYAWAQFGAHGTKDVVSWNIML 570

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQL-HAQVVLGGL 282
             FV   +   AL  F EM ++    D V  + L+   +  G + +G +L H+      +
Sbjct: 571 AGFVAHGHGDIALSFFNEMLETGEHPDEVTFVALLCGCSRAGMVSQGWELFHSMTEKYSI 630

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC 332
              L+    ++ + S+ G L    +  N++     ++  A + G + NGC
Sbjct: 631 VPNLKHYACMVDLLSRVGRLTEGYNFINRMP----ITPDAAVWGALLNGC 676



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 108/219 (49%), Gaps = 35/219 (15%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ L+  Y KS  I++A  +F  +P+K+V+SWS +I G+  N  + +++  F H ML+ +
Sbjct: 435 ANALVEMYAKSKIIEKAIEVFKYMPDKDVISWSSMIAGFCFNHKNFEALYYFRH-MLADV 493

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES---------DLF----------- 107
            PNS T +  L A A   +L   + IH  +++ G+ S         DL+           
Sbjct: 494 KPNSVTFIAALAACAATGSLRCGKEIHAHVLRQGIASEGYVPNALLDLYVKCGQTGYAWA 553

Query: 108 ----EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
                G K+  +VS N ++AGF+ +     A+  FN    +G  P+ VT + ++ GC   
Sbjct: 554 QFGAHGTKD--VVSWNIMLAGFVAHGHGDIALSFFNEMLETGEHPDEVTFVALLCGCSRA 611

Query: 164 GSRAL-CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDL 201
           G  +   EL H +T K  ++ +       L  Y+C++DL
Sbjct: 612 GMVSQGWELFHSMTEKYSIVPN-------LKHYACMVDL 643



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 15/176 (8%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y  + LL  Y K G+   A   F     K+VVSW+I++ G+  +G  + ++  F+ M+ +
Sbjct: 533 YVPNALLDLYVKCGQTGYAWAQFGAHGTKDVVSWNIMLAGFVAHGHGDIALSFFNEMLET 592

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGF 125
           G  P+  T V +L   +              MV  G E  LF  +   Y +  N      
Sbjct: 593 GEHPDEVTFVALLCGCS-----------RAGMVSQGWE--LFHSMTEKYSIVPNLKHYAC 639

Query: 126 INNKLFQQAVLL--FNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKL 179
           + + L +   L   +NF     + P+A     ++ GC    +  L EL   + ++L
Sbjct: 640 MVDLLSRVGRLTEGYNFINRMPITPDAAVWGALLNGCRIHRNIELGELAAKIVLEL 695


>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  269 bits (687), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 178/628 (28%), Positives = 298/628 (47%), Gaps = 121/628 (19%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           ++L+  Y K G +++   LFD++P++NV +W+ V+ G +  GF +++             
Sbjct: 59  NRLIDAYAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKLGFLDEA------------- 105

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINN 128
                                                LF  +      + N++V+GF  +
Sbjct: 106 -----------------------------------DSLFRSMPERDQCTWNSMVSGFAQH 130

Query: 129 KLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVN 188
              ++A+  F      G V N  T  + +  C  L        IH L  K   + DV + 
Sbjct: 131 DRCEEALYYFAMMHKEGFVLNEYTFASGLSACSGLNDMNRGVQIHSLIAKSPCLSDVYIG 190

Query: 189 NSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRII 248
           ++++DMYS   +++ A Q+F EM  ++V+SW  ++  +     A +ALK+F+ M +S + 
Sbjct: 191 SALVDMYSKCGNVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVE 250

Query: 249 CDTVALLNLISVNAILGDLKRGKQLHAQVV-LGGLQSELRLSNSIIAMYSKCGDLDSSRS 307
            D V L ++IS  A L  +K G+++HA+VV +  L++++ LSN+ + MY+KC  +  +R 
Sbjct: 251 PDEVTLASVISACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEARF 310

Query: 308 VFN-------------------------------QITEKSLVSWTAIISGYVQNGCAREA 336
           +F+                               ++ E+++VSW A+I+GY QNG   EA
Sbjct: 311 IFDSMPIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEA 370

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQL------HGIAFEAGFPRYRSV 390
           L+ F  +++E        T  +IL A  +LA L + +Q       HG  F++G      V
Sbjct: 371 LSLFCLLKRESV-CPTHYTFANILKACADLADLHLGMQAHVHVLKHGFKFQSGEEDDIFV 429

Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
            N LI  Y KCG V+  Y+VF +M   RD VSWN +I G+  NG+G  AL L+ +M ++G
Sbjct: 430 GNSLIDMYVKCGCVEEGYLVFRKM-MERDCVSWNAMIIGFAQNGYGNEALELFREMLDSG 488

Query: 451 EVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
           E PD  T + +L+ACGHAG   +G   F+ M  +  V P ++HY C+VDLL RAG L +A
Sbjct: 489 EKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEA 548

Query: 511 SGLAGKLLEGMGPNIWRALLSGCVLH---------------------------------V 537
             +  ++       IW +LL+ C +H                                 +
Sbjct: 549 KSIIEEMPVQPDSVIWGSLLAACKVHRNITLGKYVAEKLFEVETSNSGPYVLLSNMYAEL 608

Query: 538 GRFQDAEALRSGSQKKGIIKIPGISFLN 565
           G++ DA  +R   +K+G+ K PG S++ 
Sbjct: 609 GKWGDAMNVRKLMRKEGVTKQPGCSWIK 636



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 91/389 (23%), Positives = 176/389 (45%), Gaps = 63/389 (16%)

Query: 1   PCI-DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAF 59
           PC+ D Y  S L+  Y K G + +A+ +FDE+ ++NVVSW+ +I  Y  NG   +++K F
Sbjct: 182 PCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVF 241

Query: 60  SHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG-LESDL------------ 106
             M+ S + P+  T+  V+ A A L  +++ + +H  +VK   L +D+            
Sbjct: 242 QVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAK 301

Query: 107 -----------------------------------------FEGLKNPYLVSCNAIVAGF 125
                                                    F  +    +VS NA++AG+
Sbjct: 302 CSRIKEARFIFDSMPIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGY 361

Query: 126 INNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC-----VALGSRALCELI-HGLTIKL 179
             N   ++A+ LF   +   + P   T   +++ C     + LG +A   ++ HG   + 
Sbjct: 362 TQNGENEEALSLFCLLKRESVCPTHYTFANILKACADLADLHLGMQAHVHVLKHGFKFQS 421

Query: 180 GLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIF 239
           G   D+ V NS++DMY     ++    +FR+M  +D +SW  M+  F    Y  +AL++F
Sbjct: 422 GEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELF 481

Query: 240 REMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS-IIAMYSK 298
           REM  S    D + ++ ++S     G ++ G+   + +      + LR   + ++ +  +
Sbjct: 482 REMLDSGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGR 541

Query: 299 CGDLDSSRSVFNQI-TEKSLVSWTAIISG 326
            G L+ ++S+  ++  +   V W ++++ 
Sbjct: 542 AGFLEEAKSIIEEMPVQPDSVIWGSLLAA 570



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 129/269 (47%), Gaps = 33/269 (12%)

Query: 273 LHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAI--------- 323
           +HA V+  G  +E+ + N +I  Y+KCG L+  R +F+++ ++++ +W ++         
Sbjct: 42  VHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKLGF 101

Query: 324 ----------------------ISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILT 361
                                 +SG+ Q+    EAL  F  M +E    ++  T  S L+
Sbjct: 102 LDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGF-VLNEYTFASGLS 160

Query: 362 ASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVV 421
           A   L  +   +Q+H +  ++       + + L+  YSKCGNV+ A  VF+EMG  R+VV
Sbjct: 161 ACSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGD-RNVV 219

Query: 422 SWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQM 481
           SWN++I  Y  NG    AL ++  M E+   PD  T  S+++AC        G  +  ++
Sbjct: 220 SWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARV 279

Query: 482 IEENKVKPSQEHYGCVVDLLARAGCLSDA 510
           ++ +K++         VD+ A+   + +A
Sbjct: 280 VKMDKLRNDIILSNAFVDMYAKCSRIKEA 308


>gi|356506884|ref|XP_003522204.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 752

 Score =  268 bits (686), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 182/610 (29%), Positives = 297/610 (48%), Gaps = 58/610 (9%)

Query: 12  LSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNS 71
           L    K G++ ++  +FD++  ++ +SW+ +I GY       +++  FS+M +   L   
Sbjct: 97  LKQLVKQGQLCKSRYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVQPGLQRD 156

Query: 72  FTMVGVLVAAAGLQ-NLELARSIHGLMVKFGLESDLF--EGLKNPYL------------- 115
             M+ V + A GL  N+     +HG  VK GL + +F    L + Y+             
Sbjct: 157 QFMISVALKACGLGVNICFGELLHGFSVKSGLINSVFVSSALIDMYMKVGKIEQGCRVFK 216

Query: 116 -------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
                  VS  AI+AG ++     +A+L F+    S +  ++ T    ++          
Sbjct: 217 KMTKRNVVSWTAIIAGLVHAGYNMEALLYFSEMWISKVGYDSHTFAIALKASADSSLLHH 276

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
            + IH  TIK G      V N++  MY+     D  +++F +M+  DV+SWT ++  +V 
Sbjct: 277 GKAIHTQTIKQGFDESSFVINTLATMYNKCGKADYVMRLFEKMKMPDVVSWTTLITTYVQ 336

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
                 A++ F+ MRKS +  +      +IS  A L   K G+Q+H  V+  GL   L +
Sbjct: 337 KGEEEHAVEAFKRMRKSNVSPNKYTFAAVISACANLAIAKWGEQIHGHVLRLGLVDALSV 396

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
           +NSI+ +YSK G L S+  VF+ IT K ++SW+ II+ Y Q G A+EA +    MR+E  
Sbjct: 397 ANSIVTLYSKSGLLKSASLVFHGITRKDIISWSTIIAVYSQGGYAKEAFDYLSWMRREGP 456

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
              +   L S+L+  G +A LE   Q+H      G      V + LIS YSKCG+V+ A 
Sbjct: 457 KP-NEFALSSVLSVCGSMALLEQGKQVHAHVLCIGIDHEAMVHSALISMYSKCGSVEEAS 515

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
            +F  M  + +++SW  +I GY  +G+ + A+ L+ K++  G  PD  T++ +L AC HA
Sbjct: 516 KIFNGMK-INNIISWTAMINGYAEHGYSQEAINLFEKISSVGLKPDYVTFIGVLTACSHA 574

Query: 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRA 528
           G+ + G   F  M  E ++ PS+EHYGC++DLL RAG LS+A  +   +       +W  
Sbjct: 575 GMVDLGFYYFMLMTNEYQISPSKEHYGCIIDLLCRAGRLSEAEHMIRSMPCYTDDVVWST 634

Query: 529 LLSGCVLH---------------------------------VGRFQDAEALRSGSQKKGI 555
           LL  C +H                                  GR+++A  +R   + KG+
Sbjct: 635 LLRSCRVHGDVDRGRWTAEQLLRLDPNSAGTHIALANIYAAKGRWKEAAHIRKLMKSKGV 694

Query: 556 IKIPGISFLN 565
           IK  G S++N
Sbjct: 695 IKERGWSWVN 704



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 131/454 (28%), Positives = 226/454 (49%), Gaps = 32/454 (7%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           SS L+  Y K GKI++   +F ++ ++NVVSW+ +I G    G++ +++  FS M +S +
Sbjct: 195 SSALIDMYMKVGKIEQGCRVFKKMTKRNVVSWTAIIAGLVHAGYNMEALLYFSEMWISKV 254

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
             +S T    L A+A    L   ++IH   +K G +                        
Sbjct: 255 GYDSHTFAIALKASADSSLLHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKADYVMR 314

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           LFE +K P +VS   ++  ++     + AV  F   R S + PN  T   VI  C  L  
Sbjct: 315 LFEKMKMPDVVSWTTLITTYVQKGEEEHAVEAFKRMRKSNVSPNKYTFAAVISACANLAI 374

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
               E IHG  ++LGL+  +SV NS++ +YS    L +A  +F  +  KD+ISW+ ++ +
Sbjct: 375 AKWGEQIHGHVLRLGLVDALSVANSIVTLYSKSGLLKSASLVFHGITRKDIISWSTIIAV 434

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +    YA +A      MR+     +  AL +++SV   +  L++GKQ+HA V+  G+  E
Sbjct: 435 YSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHVLCIGIDHE 494

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
             + +++I+MYSKCG ++ +  +FN +   +++SWTA+I+GY ++G ++EA+N F     
Sbjct: 495 AMVHSALISMYSKCGSVEEASKIFNGMKINNIISWTAMINGYAEHGYSQEAINLF----- 549

Query: 346 EKTDSV----DSITLVSILTASGELAALEICLQLHGI-AFEAGFPRYRSVQNCLISSYSK 400
           EK  SV    D +T + +LTA      +++      +   E      +    C+I    +
Sbjct: 550 EKISSVGLKPDYVTFIGVLTACSHAGMVDLGFYYFMLMTNEYQISPSKEHYGCIIDLLCR 609

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNG 434
            G +  A  +   M    D V W+T++    V+G
Sbjct: 610 AGRLSEAEHMIRSMPCYTDDVVWSTLLRSCRVHG 643



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 93/197 (47%), Gaps = 5/197 (2%)

Query: 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD 349
           NS +    K G L  SR +F+++T +  +SWT +I+GYV    + EAL  F  M  +   
Sbjct: 94  NSELKQLVKQGQLCKSRYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVQPGL 153

Query: 350 SVDSITLVSILTASGELAALEICLQ--LHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
             D   +   L A G    + IC    LHG + ++G      V + LI  Y K G ++  
Sbjct: 154 QRDQFMISVALKACG--LGVNICFGELLHGFSVKSGLINSVFVSSALIDMYMKVGKIEQG 211

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
             VF++M   R+VVSW  II G    G+   AL  + +M  +    DS T+   L A   
Sbjct: 212 CRVFKKMT-KRNVVSWTAIIAGLVHAGYNMEALLYFSEMWISKVGYDSHTFAIALKASAD 270

Query: 468 AGLTNDGLVIFNQMIEE 484
           + L + G  I  Q I++
Sbjct: 271 SSLLHHGKAIHTQTIKQ 287


>gi|15228257|ref|NP_188283.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274288|sp|Q9LUS3.1|PP237_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16610
 gi|11994615|dbj|BAB02752.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332642322|gb|AEE75843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score =  268 bits (686), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 186/627 (29%), Positives = 315/627 (50%), Gaps = 74/627 (11%)

Query: 7   NSSKLLSN----YFKSGKIKEAENLFDEIPEK--NVVSWSIVIHGYSINGFHEKSMKAFS 60
           +SS +L N    Y    +++ A ++FDEIP    N ++W ++I  Y+ N F EK++  + 
Sbjct: 33  SSSTVLVNLTRLYASCNEVELARHVFDEIPHPRINPIAWDLMIRAYASNDFAEKALDLYY 92

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL-------------- 106
            M+ SG+ P  +T   VL A AGL+ ++  + IH  +      +D+              
Sbjct: 93  KMLNSGVRPTKYTYPFVLKACAGLRAIDDGKLIHSHVNCSDFATDMYVCTALVDFYAKCG 152

Query: 107 --------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLF-NFFRGSGLVPNAVTMLTVI 157
                   F+ +    +V+ NA+++GF  +      + LF +  R  GL PN  T++ + 
Sbjct: 153 ELEMAIKVFDEMPKRDMVAWNAMISGFSLHCCLTDVIGLFLDMRRIDGLSPNLSTIVGMF 212

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
                 G+    + +HG   ++G   D+ V   +LD+Y+    +  A ++F     K+ +
Sbjct: 213 PALGRAGALREGKAVHGYCTRMGFSNDLVVKTGILDVYAKSKCIIYARRVFDLDFKKNEV 272

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAIL------GDLKRGK 271
           +W+ M+G +V+ E   +A ++F +M    ++ D VA++  +++  IL      GDL  G+
Sbjct: 273 TWSAMIGGYVENEMIKEAGEVFFQM----LVNDNVAMVTPVAIGLILMGCARFGDLSGGR 328

Query: 272 QLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNG 331
            +H   V  G   +L + N+II+ Y+K G L  +   F++I  K ++S+ ++I+G V N 
Sbjct: 329 CVHCYAVKAGFILDLTVQNTIISFYAKYGSLCDAFRQFSEIGLKDVISYNSLITGCVVNC 388

Query: 332 CAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ 391
              E+   F +MR       D  TL+ +LTA   LAAL      HG     G+    S+ 
Sbjct: 389 RPEESFRLFHEMRTSGIRP-DITTLLGVLTACSHLAALGHGSSCHGYCVVHGYAVNTSIC 447

Query: 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE 451
           N L+  Y+KCG +D+A  VF+ M   RD+VSWNT+++G+G++G G+ AL+L++ M ETG 
Sbjct: 448 NALMDMYTKCGKLDVAKRVFDTM-HKRDIVSWNTMLFGFGIHGLGKEALSLFNSMQETGV 506

Query: 452 VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEEN-KVKPSQEHYGCVVDLLARAGCLSDA 510
            PD  T L+IL+AC H+GL ++G  +FN M   +  V P  +HY C+ DLLARAG L +A
Sbjct: 507 NPDEVTLLAILSACSHSGLVDEGKQLFNSMSRGDFNVIPRIDHYNCMTDLLARAGYLDEA 566

Query: 511 SGLAGKLLEGMGPNIWRALLSGCVLH--------------------------------VG 538
                K+       +   LLS C  +                                  
Sbjct: 567 YDFVNKMPFEPDIRVLGTLLSACWTYKNAELGNEVSKKMQSLGETTESLVLLSNTYSAAE 626

Query: 539 RFQDAEALRSGSQKKGIIKIPGISFLN 565
           R++DA  +R   +K+G++K PG S+++
Sbjct: 627 RWEDAARIRMIQKKRGLLKTPGYSWVD 653



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 133/489 (27%), Positives = 235/489 (48%), Gaps = 38/489 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM- 62
           D Y  + L+  Y K G+++ A  +FDE+P++++V+W+ +I G+S++      +  F  M 
Sbjct: 137 DMYVCTALVDFYAKCGELEMAIKVFDEMPKRDMVAWNAMISGFSLHCCLTDVIGLFLDMR 196

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPYL----- 115
            + GL PN  T+VG+  A      L   +++HG   + G  +DL    G+ + Y      
Sbjct: 197 RIDGLSPNLSTIVGMFPALGRAGALREGKAVHGYCTRMGFSNDLVVKTGILDVYAKSKCI 256

Query: 116 ---------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLT----- 155
                          V+ +A++ G++ N++ ++A  +F       LV + V M+T     
Sbjct: 257 IYARRVFDLDFKKNEVTWSAMIGGYVENEMIKEAGEVF----FQMLVNDNVAMVTPVAIG 312

Query: 156 -VIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
            ++ GC   G  +    +H   +K G ILD++V N+++  Y+    L  A + F E+  K
Sbjct: 313 LILMGCARFGDLSGGRCVHCYAVKAGFILDLTVQNTIISFYAKYGSLCDAFRQFSEIGLK 372

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
           DVIS+  ++   V      ++ ++F EMR S I  D   LL +++  + L  L  G   H
Sbjct: 373 DVISYNSLITGCVVNCRPEESFRLFHEMRTSGIRPDITTLLGVLTACSHLAALGHGSSCH 432

Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
              V+ G      + N+++ MY+KCG LD ++ VF+ + ++ +VSW  ++ G+  +G  +
Sbjct: 433 GYCVVHGYAVNTSICNALMDMYTKCGKLDVAKRVFDTMHKRDIVSWNTMLFGFGIHGLGK 492

Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGF---PRYRSVQ 391
           EAL+ F  M QE   + D +TL++IL+A      ++   QL        F   PR     
Sbjct: 493 EALSLFNSM-QETGVNPDEVTLLAILSACSHSGLVDEGKQLFNSMSRGDFNVIPRIDH-Y 550

Query: 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE 451
           NC+    ++ G +D AY    +M F  D+    T++       + E    +  KM   GE
Sbjct: 551 NCMTDLLARAGYLDEAYDFVNKMPFEPDIRVLGTLLSACWTYKNAELGNEVSKKMQSLGE 610

Query: 452 VPDSSTYLS 460
             +S   LS
Sbjct: 611 TTESLVLLS 619


>gi|15231798|ref|NP_190904.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174119|sp|Q9LFI1.1|PP280_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53360, mitochondrial; Flags: Precursor
 gi|6729487|emb|CAB67643.1| putative protein [Arabidopsis thaliana]
 gi|332645554|gb|AEE79075.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 768

 Score =  268 bits (686), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 181/618 (29%), Positives = 310/618 (50%), Gaps = 59/618 (9%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D   ++ +LS Y K G +++A  +FD +PE+N+VS++ VI GYS NG   ++++ +  M+
Sbjct: 101 DTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIRLYLKML 160

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHG-------------------LMVKFGLES 104
              L+P+ F    ++ A A   ++ L + +H                    + V+F   S
Sbjct: 161 QEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMS 220

Query: 105 D---LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLV-PNAVTMLTVIRGC 160
           D   +F G+    L+S ++I+AGF       +A+         G+  PN     + ++ C
Sbjct: 221 DASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKAC 280

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
            +L        IHGL IK  L  +     S+ DMY+    L++A ++F ++E  D  SW 
Sbjct: 281 SSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIERPDTASWN 340

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++    +  YA +A+ +F +MR S  I D ++L +L+        L +G Q+H+ ++  
Sbjct: 341 VIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGMQIHSYIIKW 400

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKS-LVSWTAIISGYVQNGCAREALNQ 339
           G  ++L + NS++ MY+ C DL    ++F      +  VSW  I++  +Q+    E L  
Sbjct: 401 GFLADLTVCNSLLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTILTACLQHEQPVEMLRL 460

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           F  M   + +  D IT+ ++L    E+++L++  Q+H  + + G    + ++N LI  Y+
Sbjct: 461 FKLMLVSECEP-DHITMGNLLRGCVEISSLKLGSQVHCYSLKTGLAPEQFIKNGLIDMYA 519

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           KCG++  A  +F+ M   RDVVSW+T+I GY  +G GE AL L+ +M   G  P+  T++
Sbjct: 520 KCGSLGQARRIFDSMDN-RDVVSWSTLIVGYAQSGFGEEALILFKEMKSAGIEPNHVTFV 578

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519
            +L AC H GL  +GL ++  M  E+ + P++EH  CVVDLLARAG L++A     ++  
Sbjct: 579 GVLTACSHVGLVEEGLKLYATMQTEHGISPTKEHCSCVVDLLARAGRLNEAERFIDEMKL 638

Query: 520 GMGPNIWRALLSGC------------------------VLHV---------GRFQDAEAL 546
                +W+ LLS C                          HV         G +++A  L
Sbjct: 639 EPDVVVWKTLLSACKTQGNVHLAQKAAENILKIDPFNSTAHVLLCSMHASSGNWENAALL 698

Query: 547 RSGSQKKGIIKIPGISFL 564
           RS  +K  + KIPG S++
Sbjct: 699 RSSMKKHDVKKIPGQSWI 716



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/366 (26%), Positives = 176/366 (48%), Gaps = 2/366 (0%)

Query: 119 NAIVAGFINNKLFQQAVLLFNFF-RGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTI 177
           N  +     +  +++A+  F+F  + S       T +++I  C +  S A    IH   +
Sbjct: 35  NDHINSLCKSNFYREALEAFDFAQKNSSFKIRLRTYISLICACSSSRSLAQGRKIHDHIL 94

Query: 178 KLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALK 237
                 D  +NN +L MY     L  A ++F  M  ++++S+T ++  +       +A++
Sbjct: 95  NSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIR 154

Query: 238 IFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYS 297
           ++ +M +  ++ D  A  ++I   A   D+  GKQLHAQV+     S L   N++IAMY 
Sbjct: 155 LYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYV 214

Query: 298 KCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLV 357
           +   +  +  VF  I  K L+SW++II+G+ Q G   EAL+   +M        +     
Sbjct: 215 RFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFG 274

Query: 358 SILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFL 417
           S L A   L   +   Q+HG+  ++           L   Y++CG ++ A  VF+++   
Sbjct: 275 SSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIE-R 333

Query: 418 RDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVI 477
            D  SWN II G   NG+ + A++++ +M  +G +PD+ +  S+L A       + G+ I
Sbjct: 334 PDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGMQI 393

Query: 478 FNQMIE 483
            + +I+
Sbjct: 394 HSYIIK 399


>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 837

 Score =  268 bits (686), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 179/617 (29%), Positives = 301/617 (48%), Gaps = 57/617 (9%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D + ++ LL+ Y K G +  A  LFD +PE+N+VS+  ++  ++  G  E +   F  +
Sbjct: 94  LDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRL 153

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY----LV 116
              G   N F +  +L  A  +    LA  +H    K G + + F   GL + Y    LV
Sbjct: 154 RWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLV 213

Query: 117 S----------------CNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
           S                  A+V+ +  N   + A  +F+  R SG  PN   + +V++  
Sbjct: 214 SDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAA 273

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
           V L S  L + IHG  IK     +  V  ++LDMY+   D+  A   F  +   DVI  +
Sbjct: 274 VCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLS 333

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+  +        A ++F  + +S ++ +  +L +++     +  L  GKQ+H   +  
Sbjct: 334 FMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKI 393

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           G +S+L + N+++  Y+KC D+DSS  +F+ + + + VSW  I+ G+ Q+G   EAL+ F
Sbjct: 394 GHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVF 453

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            +M+  +      +T  S+L A    A++    Q+H    ++ F     + N LI +Y+K
Sbjct: 454 CEMQAAQMPCT-QVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAK 512

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CG +  A  VF+ +   RD++SWN II GY ++G    AL L+ +M ++    +  T+++
Sbjct: 513 CGYIRDALKVFQHL-MERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVA 571

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           +L+ C   GL N GL +F+ M  ++ +KPS EHY C+V LL RAG L+DA    G +   
Sbjct: 572 LLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSA 631

Query: 521 MGPNIWRALLSGCVLH----VGRF----------QDAEA-------------------LR 547
               +WRALLS C++H    +GRF          QD                      LR
Sbjct: 632 PSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQVALLR 691

Query: 548 SGSQKKGIIKIPGISFL 564
              +  G+ K+PG+S++
Sbjct: 692 KSMRNIGVRKVPGLSWV 708



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 154/341 (45%), Gaps = 15/341 (4%)

Query: 157 IRGCVALGSRALCELIHGLTIKLGLI--LDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
           ++GC+A G       +HG  ++ G +  LD+   N +L+MY  L  L +A ++F  M  +
Sbjct: 66  LQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPER 125

Query: 215 DVISWTRMMGLFV---DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGK 271
           +++S+  ++       DFE A     +FR +R      +   L  ++ +   +       
Sbjct: 126 NMVSFVTLVQAHAQRGDFEAAA---ALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAG 182

Query: 272 QLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNG 331
            +H+     G      + + +I  YS C  +  +  VFN I  K  V WTA++S Y +N 
Sbjct: 183 GVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSEND 242

Query: 332 CAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ 391
           C   A   F KMR       +   L S+L A+  L ++ +   +HG A +        V 
Sbjct: 243 CPENAFRVFSKMRVSGCKP-NPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVG 301

Query: 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE 451
             L+  Y+KCG++  A + FE + +  DV+  + +I  Y  +   E A  L+ ++  +  
Sbjct: 302 GALLDMYAKCGDIKDARLAFEMIPY-DDVILLSFMISRYAQSNQNEQAFELFLRLMRSSV 360

Query: 452 VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQE 492
           +P+  +  S+L AC     TN   + F + I  + +K   E
Sbjct: 361 LPNEYSLSSVLQAC-----TNMVQLDFGKQIHNHAIKIGHE 396


>gi|356546093|ref|XP_003541466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Glycine max]
          Length = 775

 Score =  268 bits (686), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 184/623 (29%), Positives = 300/623 (48%), Gaps = 64/623 (10%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKS---MKAFSHMML 64
           ++ L++ Y K     +A  +FD I  K+VVSW+ +I+ +S    H  S   M  F  +++
Sbjct: 48  ANSLINLYAKCSHFSKANLVFDSINNKDVVSWNCLINAFSQQQAHAPSLHVMHLFRQLVM 107

Query: 65  S--GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK-------FGLES----------- 104
           +   ++PN+ T+ GV  AA+ L +    R  H L VK       F   S           
Sbjct: 108 AHKTIVPNAHTLTGVFTAASTLSDSRAGRQAHALAVKTACSHDVFAASSLLNMYCKTGLV 167

Query: 105 ----DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGS--GLVPNAVTMLTVIR 158
               DLF+ +     VS   +++G+ + +L  +A  LF   R    G   N     +V+ 
Sbjct: 168 FEARDLFDEMPERNAVSWATMISGYASQELADEAFELFKLMRHEEKGKNENEFVFTSVLS 227

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
                        +H L +K GL+  VSV N+++ MY     L+ A++ F     K+ I+
Sbjct: 228 ALTCYMLVNTGRQVHSLAMKNGLVCIVSVANALVTMYVKCGSLEDALKTFELSGNKNSIT 287

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           W+ M+  F  F  +  ALK+F +M +S  +     L+ +I+  +    +  G+Q+H   +
Sbjct: 288 WSAMVTGFAQFGDSDKALKLFYDMHQSGELPSEFTLVGVINACSDACAIVEGRQMHGYSL 347

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
             G + +L + ++++ MY+KCG +  +R  F  I +  +V WT+II+GYVQNG    ALN
Sbjct: 348 KLGYELQLYVLSALVDMYAKCGSIVDARKGFECIQQPDVVLWTSIITGYVQNGDYEGALN 407

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
            + KM+       D +T+ S+L A   LAAL+   Q+H    +  F     + + L + Y
Sbjct: 408 LYGKMQLGGVIPND-LTMASVLKACSNLAALDQGKQMHAGIIKYNFSLEIPIGSALSAMY 466

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
           +KCG++D  Y +F  M   RDV+SWN +I G   NG G   L L+ KM   G  PD+ T+
Sbjct: 467 AKCGSLDDGYRIFWRMP-ARDVISWNAMISGLSQNGRGNEGLELFEKMCLEGTKPDNVTF 525

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
           +++L+AC H GL + G V F  M +E  + P+ EHY C+VD+L+RAG L +A        
Sbjct: 526 VNLLSACSHMGLVDRGWVYFKMMFDEFNIAPTVEHYACMVDILSRAGKLHEAKEFIESAT 585

Query: 519 EGMGPNIWRALLSGCVLH---------------------------------VGRFQDAEA 545
              G  +WR LL+    H                                 +G+++D E 
Sbjct: 586 VDHGLCLWRILLAASKNHRDYDLGAYAGEKLMELGSLESSAYVLLSSIYTALGKWEDVER 645

Query: 546 LRSGSQKKGIIKIPGISFLNSTS 568
           +R   + +G+ K PG S++   S
Sbjct: 646 VRGMMKARGVTKEPGCSWIELKS 668



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 137/494 (27%), Positives = 237/494 (47%), Gaps = 36/494 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + +S LL+ Y K+G + EA +LFDE+PE+N VSW+ +I GY+     +++ + F  M 
Sbjct: 150 DVFAASSLLNMYCKTGLVFEARDLFDEMPERNAVSWATMISGYASQELADEAFELFKLMR 209

Query: 64  LS--GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG-------------------- 101
               G   N F    VL A      +   R +H L +K G                    
Sbjct: 210 HEEKGKNENEFVFTSVLSALTCYMLVNTGRQVHSLAMKNGLVCIVSVANALVTMYVKCGS 269

Query: 102 LESDL--FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
           LE  L  FE   N   ++ +A+V GF       +A+ LF     SG +P+  T++ VI  
Sbjct: 270 LEDALKTFELSGNKNSITWSAMVTGFAQFGDSDKALKLFYDMHQSGELPSEFTLVGVINA 329

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C    +      +HG ++KLG  L + V ++++DMY+    +  A + F  ++  DV+ W
Sbjct: 330 CSDACAIVEGRQMHGYSLKLGYELQLYVLSALVDMYAKCGSIVDARKGFECIQQPDVVLW 389

Query: 220 TRMM-GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           T ++ G   + +Y G AL ++ +M+   +I + + + +++   + L  L +GKQ+HA ++
Sbjct: 390 TSIITGYVQNGDYEG-ALNLYGKMQLGGVIPNDLTMASVLKACSNLAALDQGKQMHAGII 448

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
                 E+ + +++ AMY+KCG LD    +F ++  + ++SW A+ISG  QNG   E L 
Sbjct: 449 KYNFSLEIPIGSALSAMYAKCGSLDDGYRIFWRMPARDVISWNAMISGLSQNGRGNEGLE 508

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN--CLIS 396
            F KM  E T   D++T V++L+A   +  ++       + F+  F    +V++  C++ 
Sbjct: 509 LFEKMCLEGTKP-DNVTFVNLLSACSHMGLVDRGWVYFKMMFDE-FNIAPTVEHYACMVD 566

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALY--HKMTETGEVPD 454
             S+ G +  A    E       +  W  ++       H +  L  Y   K+ E G +  
Sbjct: 567 ILSRAGKLHEAKEFIESATVDHGLCLWRILL--AASKNHRDYDLGAYAGEKLMELGSLES 624

Query: 455 SSTYL--SILNACG 466
           S+  L  SI  A G
Sbjct: 625 SAYVLLSSIYTALG 638



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 107/422 (25%), Positives = 201/422 (47%), Gaps = 17/422 (4%)

Query: 146 LVPNAVTMLTVIRG---CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLD 202
           L+P +   L V+R    C           +H   +  G      + NS++++Y+      
Sbjct: 3   LLPLSHQHLQVLRALVHCTRHKQLRKGRALHARILVTGSFSSTQIANSLINLYAKCSHFS 62

Query: 203 AAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKI---FRE--MRKSRIICDTVALLNL 257
            A  +F  +  KDV+SW  ++  F   +    +L +   FR+  M    I+ +   L  +
Sbjct: 63  KANLVFDSINNKDVVSWNCLINAFSQQQAHAPSLHVMHLFRQLVMAHKTIVPNAHTLTGV 122

Query: 258 ISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSL 317
            +  + L D + G+Q HA  V      ++  ++S++ MY K G +  +R +F+++ E++ 
Sbjct: 123 FTAASTLSDSRAGRQAHALAVKTACSHDVFAASSLLNMYCKTGLVFEARDLFDEMPERNA 182

Query: 318 VSWTAIISGYVQNGCAREALNQFIKMR-QEKTDSVDSITLVSILTASGELAALEICLQLH 376
           VSW  +ISGY     A EA   F  MR +EK  + +     S+L+A      +    Q+H
Sbjct: 183 VSWATMISGYASQELADEAFELFKLMRHEEKGKNENEFVFTSVLSALTCYMLVNTGRQVH 242

Query: 377 GIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHG 436
            +A + G     SV N L++ Y KCG+++ A   FE  G  ++ ++W+ ++ G+   G  
Sbjct: 243 SLAMKNGLVCIVSVANALVTMYVKCGSLEDALKTFELSGN-KNSITWSAMVTGFAQFGDS 301

Query: 437 ETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY-- 494
           + AL L++ M ++GE+P   T + ++NAC  A    +G  +    +   K+    + Y  
Sbjct: 302 DKALKLFYDMHQSGELPSEFTLVGVINACSDACAIVEGRQMHGYSL---KLGYELQLYVL 358

Query: 495 GCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKG 554
             +VD+ A+ G + DA     + ++     +W ++++G V + G ++ A  L    Q  G
Sbjct: 359 SALVDMYAKCGSIVDARK-GFECIQQPDVVLWTSIITGYVQN-GDYEGALNLYGKMQLGG 416

Query: 555 II 556
           +I
Sbjct: 417 VI 418


>gi|108712052|gb|ABF99847.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1221

 Score =  268 bits (686), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 162/530 (30%), Positives = 267/530 (50%), Gaps = 33/530 (6%)

Query: 31  IPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELA 90
           +P KNVV+W+ V+ GY+ NG  E ++  F+ M+ SG+ PN F     LVA A L  L   
Sbjct: 1   MPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGALRAG 60

Query: 91  RSIHGLMVKFGLESD----------------------LFEGLKNPYLVSCNAIVAGFINN 128
             +H L V+ G   D                      +F+ + +P +V   ++++ F  N
Sbjct: 61  EQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFCRN 120

Query: 129 KLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIK-LGL-ILDVS 186
             F+ A          GL PN  TM T++  C     R L + IHG  IK +GL    V 
Sbjct: 121 GEFELAAEALIQMLKQGLKPNEHTMTTILTAC----PRVLGQQIHGYLIKKIGLRSQSVY 176

Query: 187 VNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSR 246
            + +++D YS   +   A  +F  + CK+V+SW  MM L++      +AL++F +M    
Sbjct: 177 SSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISEG 236

Query: 247 IICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSR 306
           +  +  AL  ++      G +  G+QLH   +   L +++R+SN++++MY + G ++   
Sbjct: 237 VDPNEFALSIVLGA---CGSIGLGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELE 293

Query: 307 SVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGEL 366
           ++ N+I    LVSWT  IS   QNG   +A+    +M  E   + +     S+L++  ++
Sbjct: 294 AMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGF-TPNGYAFSSVLSSCADV 352

Query: 367 AALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTI 426
           A+L+  +Q H +A + G        N LI+ YSKCG +  A + F+ M    DV SWN++
Sbjct: 353 ASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVM-HTHDVTSWNSL 411

Query: 427 IYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENK 486
           I+G+  +G    AL ++ KM   G  PD ST+L +L  C H+G+  +G + F  MI++  
Sbjct: 412 IHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRLMIDQYS 471

Query: 487 VKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
             P+  HY C++D+L R G   +A  +   +       IW+ LL+ C LH
Sbjct: 472 FTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLASCKLH 521



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 127/507 (25%), Positives = 226/507 (44%), Gaps = 38/507 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  S L+  Y + G +  A+ +FD +   +VV ++ +I  +  NG  E + +A   M+
Sbjct: 75  DAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQML 134

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK------------------------ 99
             GL PN  TM  +L A   +    L + IHG ++K                        
Sbjct: 135 KQGLKPNEHTMTTILTACPRV----LGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGE 190

Query: 100 FGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
           F L   +F+ L    +VS  +++  +I +   ++A+ +F      G+ PN   +  V+  
Sbjct: 191 FKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGA 250

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C   GS  L   +H   IK  LI D+ V+N++L MY     ++    +  ++E  D++SW
Sbjct: 251 C---GSIGLGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSW 307

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           T  +       +   A+ +  +M       +  A  +++S  A +  L +G Q H   + 
Sbjct: 308 TTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLALK 367

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G  SE+   N++I MYSKCG + S+R  F+ +    + SW ++I G+ Q+G A +AL  
Sbjct: 368 LGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIHGHAQHGDANKALEV 427

Query: 340 FIKMRQEKTDSVDSITLVSILTA---SGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
           F KMR       DS T + +L     SG +   E+  +L  +  +  F    S   C+I 
Sbjct: 428 FSKMRSNGIKPDDS-TFLGVLMGCNHSGMVEEGELFFRL--MIDQYSFTPAPSHYACMID 484

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
              + G  D A  +  +M F  D + W T++    ++ + +       ++ E  +  DS+
Sbjct: 485 MLGRNGRFDEALRMINDMPFEPDALIWKTLLASCKLHRNLDIGKLAADRLMELSDR-DSA 543

Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIE 483
           +Y+ + N     G   D   +  +M E
Sbjct: 544 SYVLMSNIYAMHGEWEDARKVRRRMDE 570


>gi|225423551|ref|XP_002274884.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial [Vitis vinifera]
 gi|147818711|emb|CAN65040.1| hypothetical protein VITISV_009460 [Vitis vinifera]
          Length = 700

 Score =  268 bits (685), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 183/624 (29%), Positives = 312/624 (50%), Gaps = 68/624 (10%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           +KL+S Y   G ++ A  +FD I   ++ SW ++I  Y +N  + + ++ ++  +   L 
Sbjct: 75  TKLVSLYGSFGHVECARLMFDRIRNPDLYSWKVMIRWYFLNDSYSEIVQFYNTRLRKCL- 133

Query: 69  PNSFTMVG---VLVAAAGLQNLELARSIHGLMVKFG-LESDLFEGLKNPY---------- 114
            N +  V    VL A + L+  +  R +H  +VK G  +S +  GL + Y          
Sbjct: 134 -NEYDNVVFSIVLKACSELRETDEGRKLHCQIVKVGSPDSFVLTGLVDMYAKCREVEDSR 192

Query: 115 ----------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
                     +V   +++ G++ N   ++ ++LFN  R   +  N  T+ +++  C  LG
Sbjct: 193 RVFDEILDRNVVCWTSMIVGYVQNDCLKEGLVLFNRMREGLVEGNQYTLGSLVTACTKLG 252

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
           +    + +HG  IK G  L+  +   +LD+Y    D+  A  +F E+   D++SWT M+ 
Sbjct: 253 ALHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIV 312

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            +    Y  +ALK+F + R   ++ +TV   +++S  A  G L  G+ +H   +  G   
Sbjct: 313 GYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTGSLNMGRSVHCLGIKLG-SE 371

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           +    N+++ MY+KC  +  +R VF  + +K +++W +IISGY QNG A EAL  F +MR
Sbjct: 372 DATFENALVDMYAKCHMIGDARYVFETVFDKDVIAWNSIISGYTQNGYAYEALELFDQMR 431

Query: 345 QEKTDSV--DSITLVSILTASGELAALEICLQLHGIAFEAGF-PRYRSVQNCLISSYSKC 401
              +DSV  D+ITLVS+L+A   + A  +   LHG A +AG       V   L++ Y+KC
Sbjct: 432 ---SDSVYPDAITLVSVLSACASVGAYRVGSSLHGYAIKAGLLSGSVYVGTALLNFYAKC 488

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G+ + A ++F+EMG  ++ ++W+ +I GYG+ G    +L L+  M +    P+   + +I
Sbjct: 489 GDAESARVIFDEMG-EKNTITWSAMIGGYGIQGDCSRSLELFGDMLKEKLEPNEVIFTTI 547

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L+AC H+G+  +G   FN M +     PS +HY C+VDLLARAG L +A     K+    
Sbjct: 548 LSACSHSGMLGEGWRYFNTMCQVYNFVPSMKHYACMVDLLARAGRLEEALDFIEKIPIQP 607

Query: 522 GPNIWRALLSGCVLHV---------------------------------GRFQDAEALRS 548
             ++  A L GC LH                                  GR+  A  +  
Sbjct: 608 DVSLLGAFLHGCRLHSRFDLGEVAVRRMLELHPDKACYYVLMSNLYASEGRWSQANQVME 667

Query: 549 GSQKKGIIKIPGISFLN-STSRDF 571
             +++G+ K+PG S ++  TS DF
Sbjct: 668 LMKQRGLAKLPGWSLVDIETSNDF 691



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 133/487 (27%), Positives = 230/487 (47%), Gaps = 40/487 (8%)

Query: 72  FTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------------FEG 109
           F+++G+    + L      R IH L+V  GL  DL                      F+ 
Sbjct: 43  FSLLGICKTVSSL------RKIHALLVVHGLSEDLLCETKLVSLYGSFGHVECARLMFDR 96

Query: 110 LKNPYLVSCNAIVAGFINNKLFQQAVLLFNF-FRGSGLVPNAVTMLTVIRGCVALGSRAL 168
           ++NP L S   ++  +  N  + + V  +N   R      + V    V++ C  L     
Sbjct: 97  IRNPDLYSWKVMIRWYFLNDSYSEIVQFYNTRLRKCLNEYDNVVFSIVLKACSELRETDE 156

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
              +H   +K+G   D  V   ++DMY+   +++ + ++F E+  ++V+ WT M+  +V 
Sbjct: 157 GRKLHCQIVKVGSP-DSFVLTGLVDMYAKCREVEDSRRVFDEILDRNVVCWTSMIVGYVQ 215

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
            +   + L +F  MR+  +  +   L +L++    LG L +GK +H  V+  G      L
Sbjct: 216 NDCLKEGLVLFNRMREGLVEGNQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSFL 275

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
              ++ +Y KCGD+  + SVF++++   LVSWTA+I GY Q G  REAL  F   R  K 
Sbjct: 276 VTPLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQRGYPREALKLFTDERW-KD 334

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
              +++T  S+L+A  +  +L +   +H +  + G     + +N L+  Y+KC  +  A 
Sbjct: 335 LLPNTVTTSSVLSACAQTGSLNMGRSVHCLGIKLG-SEDATFENALVDMYAKCHMIGDAR 393

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
            VFE + F +DV++WN+II GY  NG+   AL L+ +M      PD+ T +S+L+AC   
Sbjct: 394 YVFETV-FDKDVIAWNSIISGYTQNGYAYEALELFDQMRSDSVYPDAITLVSVLSACASV 452

Query: 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN---I 525
           G    G  +    I+   +  S      +++  A+ G   DA   A  + + MG      
Sbjct: 453 GAYRVGSSLHGYAIKAGLLSGSVYVGTALLNFYAKCG---DAES-ARVIFDEMGEKNTIT 508

Query: 526 WRALLSG 532
           W A++ G
Sbjct: 509 WSAMIGG 515



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 127/490 (25%), Positives = 239/490 (48%), Gaps = 40/490 (8%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L+  Y K  +++++  +FDEI ++NVV W+ +I GY  N   ++ +  F+ M 
Sbjct: 171 DSFVLTGLVDMYAKCREVEDSRRVFDEILDRNVVCWTSMIVGYVQNDCLKEGLVLFNRMR 230

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
              +  N +T+  ++ A   L  L   + +HG ++K G + +                  
Sbjct: 231 EGLVEGNQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIR 290

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +F+ L    LVS  A++ G+      ++A+ LF   R   L+PN VT  +V+  C 
Sbjct: 291 DAFSVFDELSTIDLVSWTAMIVGYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACA 350

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
             GS  +   +H L IKLG   D +  N+++DMY+    +  A  +F  +  KDVI+W  
Sbjct: 351 QTGSLNMGRSVHCLGIKLG-SEDATFENALVDMYAKCHMIGDARYVFETVFDKDVIAWNS 409

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++  +    YA +AL++F +MR   +  D + L++++S  A +G  + G  LH   +  G
Sbjct: 410 IISGYTQNGYAYEALELFDQMRSDSVYPDAITLVSVLSACASVGAYRVGSSLHGYAIKAG 469

Query: 282 LQS-ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGY-VQNGCAREALNQ 339
           L S  + +  +++  Y+KCGD +S+R +F+++ EK+ ++W+A+I GY +Q  C+R +L  
Sbjct: 470 LLSGSVYVGTALLNFYAKCGDAESARVIFDEMGEKNTITWSAMIGGYGIQGDCSR-SLEL 528

Query: 340 FIKMRQEKTDSVDSI--TLVSILTASGELAA----LEICLQLHGIAFEAGFPRYRSVQNC 393
           F  M +EK +  + I  T++S  + SG L           Q++   F      Y     C
Sbjct: 529 FGDMLKEKLEPNEVIFTTILSACSHSGMLGEGWRYFNTMCQVYN--FVPSMKHY----AC 582

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           ++   ++ G ++ A    E++    DV      ++G  ++   +       +M E    P
Sbjct: 583 MVDLLARAGRLEEALDFIEKIPIQPDVSLLGAFLHGCRLHSRFDLGEVAVRRMLELH--P 640

Query: 454 DSSTYLSILN 463
           D + Y  +++
Sbjct: 641 DKACYYVLMS 650


>gi|449522919|ref|XP_004168473.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like, partial [Cucumis sativus]
          Length = 670

 Score =  268 bits (685), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 164/533 (30%), Positives = 286/533 (53%), Gaps = 12/533 (2%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  +KL++ Y   G ++ A  +FDEIP+   V  + +++GY  N  +   ++    M 
Sbjct: 88  DQFLVAKLVAAYSSLGCLENARKVFDEIPQPKTVLCNAMVNGYLQNERYNDCIELLKMMS 147

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVA 123
              L  +S+T    L A   L + E+   + GL V  GL    F G          + + 
Sbjct: 148 RCHLEFDSYTCNFALKACMFLLDYEMGMEVIGLAVCKGLAGGRFLG----------SSIL 197

Query: 124 GFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLIL 183
            F+   LF++   LF     + + P+AVTM+++I+ C  + +    + +HG  +  G+  
Sbjct: 198 NFLEG-LFREGYNLFLDMLYNKIEPSAVTMISLIQSCGEMRNLTFGKCMHGFVLGFGMSR 256

Query: 184 DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMR 243
           D  V  +++DMY    D+++A  IF  M  ++++SW  M+  +V      + L++F+++ 
Sbjct: 257 DTRVLTTLIDMYCKSGDVESARWIFENMPSRNLVSWNVMISGYVQNGLLVETLRLFQKLI 316

Query: 244 KSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLD 303
              +  D+  +++LI + +   DL  GK LH  +   GL   L L  +I+ +Y+KCG L 
Sbjct: 317 MDDVGFDSGTVVSLIQLCSRTADLDGGKILHGFIYRRGLDLNLVLPTAIVDLYAKCGSLA 376

Query: 304 SSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTAS 363
            + SVF ++  K+++SWTA++ G  QNG AR+AL  F +M+ E+  + +++TLVS++   
Sbjct: 377 YASSVFERMKNKNVISWTAMLVGLAQNGHARDALKLFDQMQNERV-TFNALTLVSLVYCC 435

Query: 364 GELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSW 423
             L  L     +H       F     V   LI  Y+KC  ++ A +VF+     +DV+ +
Sbjct: 436 TLLGLLREGRSVHATLTRFHFASEVVVMTALIDMYAKCSKINSAEMVFKYGLTPKDVILY 495

Query: 424 NTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIE 483
           N++I GYG++G G  AL +YH+M   G  P+ ST++S+L+AC H+GL  +G+ +F  M++
Sbjct: 496 NSMISGYGMHGLGHKALCVYHRMNREGLQPNESTFVSLLSACSHSGLVEEGIALFQNMVK 555

Query: 484 ENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
           ++   P+ + Y C+VDLL+RAG L  A  L  ++       I   LL+GC+LH
Sbjct: 556 DHNTTPTDKLYACIVDLLSRAGRLRQAEELINQMPFTPTSGILETLLNGCLLH 608



 Score = 41.2 bits (95), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 76/337 (22%), Positives = 129/337 (38%), Gaps = 83/337 (24%)

Query: 292 IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
           ++A YS  G L+++R VF++I +   V   A+++GY+QN    + + + +KM        
Sbjct: 95  LVAAYSSLGCLENARKVFDEIPQPKTVLCNAMVNGYLQNERYNDCI-ELLKMMSRCHLEF 153

Query: 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYR----SVQNCLISSYSKCGN--VD 405
           DS T    L A   L   E+ +++ G+A   G    R    S+ N L   + +  N  +D
Sbjct: 154 DSYTCNFALKACMFLLDYEMGMEVIGLAVCKGLAGGRFLGSSILNFLEGLFREGYNLFLD 213

Query: 406 LAYIVFE--------------EM----------------GFLRDVVSWNTIIYGYGVNGH 435
           + Y   E              EM                G  RD     T+I  Y  +G 
Sbjct: 214 MLYNKIEPSAVTMISLIQSCGEMRNLTFGKCMHGFVLGFGMSRDTRVLTTLIDMYCKSGD 273

Query: 436 GETALALYHKMTETGEVP-------------------------------DSSTYLSILNA 464
            E+A  ++  M     V                                DS T +S++  
Sbjct: 274 VESARWIFENMPSRNLVSWNVMISGYVQNGLLVETLRLFQKLIMDDVGFDSGTVVSLIQL 333

Query: 465 CGHAGLTNDGLV----IFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           C      + G +    I+ + ++ N V P+      +VDL A+ G L+ AS +  ++   
Sbjct: 334 CSRTADLDGGKILHGFIYRRGLDLNLVLPTA-----IVDLYAKCGSLAYASSVFERM--- 385

Query: 521 MGPNI--WRALLSGCVLHVGRFQDAEALRSGSQKKGI 555
              N+  W A+L G +   G  +DA  L    Q + +
Sbjct: 386 KNKNVISWTAMLVG-LAQNGHARDALKLFDQMQNERV 421


>gi|12957718|gb|AAK09236.1|AC084320_23 hypothetical protein [Oryza sativa Japonica Group]
 gi|108711388|gb|ABF99183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 843

 Score =  268 bits (685), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 177/625 (28%), Positives = 310/625 (49%), Gaps = 59/625 (9%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  S L+  Y   G + +A  +FD + E++ V W++++ GY   G    +++ F  M 
Sbjct: 180 DMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMR 239

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
            SG  PN  T+   L  +A   +L     +H L VK+GLES+                  
Sbjct: 240 ASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLD 299

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               LF  +    LV+ N +++G + N    QA+LLF   + SG+ P++VT+++++    
Sbjct: 300 DGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALT 359

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            L      + +HG  ++  + +DV + ++++D+Y     +  A  ++   +  DV+  + 
Sbjct: 360 DLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGST 419

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+  +V    + +A+K+FR + +  I  + VA+ +++   A +  +K G++LH+  +   
Sbjct: 420 MISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNA 479

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
            +    + ++++ MY+KCG LD S  +F++I+ K  V+W ++IS + QNG   EALN F 
Sbjct: 480 YEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFR 539

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +M  E      ++T+ S+L+A   L A+    ++HG+  +         ++ LI  Y KC
Sbjct: 540 EMCMEGV-KYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKC 598

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           GN++ A+ VFE M   ++ VSWN+II  YG  G  + +++L   M E G   D  T+L++
Sbjct: 599 GNLEWAHRVFESMP-EKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLAL 657

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           ++AC HAG   +GL +F  M EE ++ P  EH+ C+VDL +RAG L  A  L   +    
Sbjct: 658 VSACAHAGQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKP 717

Query: 522 GPNIWRALLSGCVLH---------------------------------VGRFQDAEALRS 548
              IW ALL  C +H                                  GR+     +R 
Sbjct: 718 DAGIWGALLHACRVHRNVELAEIASQELFKLDPHNSGYYVLMSNINAVAGRWDGVSKVRR 777

Query: 549 GSQKKGIIKIPGISF--LNSTSRDF 571
             +   + KIPG S+  +N+TS  F
Sbjct: 778 LMKDTKVQKIPGYSWVDVNNTSHLF 802



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 128/487 (26%), Positives = 240/487 (49%), Gaps = 33/487 (6%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNV---VSWSIVIHGYSINGFHEKSM----KAFSH 61
           ++L+  Y  + + ++A  +F  +P       + W+ +I G ++ G +  ++    K ++H
Sbjct: 79  TRLVGMYVLARRFRDAVAVFSSLPRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAH 138

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL--------------- 106
              S  LP+S T   V+ + A L  + L R +H      GL+ D+               
Sbjct: 139 P--SAPLPDSHTFPYVVKSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKMYANGGL 196

Query: 107 -------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                  F+G+     V  N ++ G++       AV LF   R SG  PN  T+   +  
Sbjct: 197 LWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSV 256

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
                       +H L +K GL  +V+V N+++ MY+    LD   ++F  M   D+++W
Sbjct: 257 SATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTW 316

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
             M+   V   +   AL +F +M+KS I  D+V L++L+     L    +GK+LH  +V 
Sbjct: 317 NGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVR 376

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
             +  ++ L ++++ +Y KC  +  ++SV++      +V  + +ISGYV NG ++EA+  
Sbjct: 377 NCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKM 436

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           F +   E+    +++ + S+L A   +AA+++  +LH  A +  +     V++ L+  Y+
Sbjct: 437 F-RYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYA 495

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           KCG +DL++ +F ++   +D V+WN++I  +  NG  E AL L+ +M   G    + T  
Sbjct: 496 KCGRLDLSHYIFSKIS-AKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTIS 554

Query: 460 SILNACG 466
           S+L+AC 
Sbjct: 555 SVLSACA 561



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/320 (28%), Positives = 155/320 (48%), Gaps = 12/320 (3%)

Query: 153 MLTVIRGCVALGSRALCELIHGLTIKLGL-ILDVSVNNSVLDMYSCLMDLDAAIQIFREM 211
           +L V+RGCV+    +L   +HG  +  GL   D ++   ++ MY        A+ +F  +
Sbjct: 42  LLAVLRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSL 101

Query: 212 E-----CKDVISWTRMMGLFVDFEYAGDALKIFREM--RKSRIICDTVALLNLISVNAIL 264
                 C    +W  + GL +  +Y   AL  + +M    S  + D+     ++   A L
Sbjct: 102 PRGAAACALPWNWL-IRGLTMAGDYRS-ALLFYLKMWAHPSAPLPDSHTFPYVVKSCAAL 159

Query: 265 GDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAII 324
           G +  G+ +H      GL  ++ + +++I MY+  G L  +R VF+ + E+  V W  ++
Sbjct: 160 GAIALGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMM 219

Query: 325 SGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGF 384
            GYV+ G    A+  F  MR    +  +  TL   L+ S   + L   +QLH +A + G 
Sbjct: 220 DGYVKAGSVSSAVELFGDMRASGCEP-NFATLACFLSVSATESDLFFGVQLHTLAVKYGL 278

Query: 385 PRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH 444
               +V N L+S Y+KC  +D  + +F  M    D+V+WN +I G   NG  + AL L+ 
Sbjct: 279 ESEVAVANTLVSMYAKCKCLDDGWKLFGLMP-RDDLVTWNGMISGCVQNGFVDQALLLFC 337

Query: 445 KMTETGEVPDSSTYLSILNA 464
            M ++G  PDS T +S+L A
Sbjct: 338 DMQKSGIRPDSVTLVSLLPA 357



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 159/327 (48%), Gaps = 25/327 (7%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  S L+  YFK   ++ A++++D     +VV  S +I GY +NG  ++++K F ++
Sbjct: 381 MDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYL 440

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
           +  G+ PN+  +  VL A A +  ++L + +H   +K   E                   
Sbjct: 441 LEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRL 500

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +F  +     V+ N++++ F  N   ++A+ LF      G+  + VT+ +V+  C
Sbjct: 501 DLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSAC 560

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
            +L +    + IHG+ IK  +  D+   ++++DMY    +L+ A ++F  M  K+ +SW 
Sbjct: 561 ASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWN 620

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++  +  +    +++ + R M++     D V  L L+S  A  G ++ G +L  + +  
Sbjct: 621 SIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEGLRLF-RCMTE 679

Query: 281 GLQSELRLSN--SIIAMYSKCGDLDSS 305
             Q   R+ +   ++ +YS+ G LD +
Sbjct: 680 EYQIAPRMEHFACMVDLYSRAGKLDKA 706


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  268 bits (685), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 173/609 (28%), Positives = 296/609 (48%), Gaps = 57/609 (9%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+S Y + G + +A  LF  +P+++++SW+ +I GY+      ++M+ +  M   G+ P 
Sbjct: 371 LISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPG 430

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFE 108
             T + +L A A        + IH  +++ G++S+                      +FE
Sbjct: 431 RVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFE 490

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
           G +   ++S N+++AG   +  ++ A  LF   +   L P+ +T  +V+ GC    +  L
Sbjct: 491 GTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALEL 550

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
            + IHG   + GL LDV++ N++++MY     L  A  +F  ++ +DV+SWT M+G   D
Sbjct: 551 GKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCAD 610

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
                 A+++F +M+            +++ V      L  GK++ A ++  G + +  +
Sbjct: 611 QGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGV 670

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
            N++I+ YSK G +  +R VF+++  + +VSW  II+GY QNG  + A+ +F    QE+ 
Sbjct: 671 GNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAV-EFAYQMQEQD 729

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
              +  + VS+L A    +ALE   ++H    +        V   LIS Y+KCG+   A 
Sbjct: 730 VVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQ 789

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
            VF+ +   ++VV+WN +I  Y  +G    AL  ++ M + G  PD ST+ SIL+AC HA
Sbjct: 790 EVFDNI-IEKNVVTWNAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSACNHA 848

Query: 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRA 528
           GL  +G  IF+ M  E  V P+ EHYGC+V LL RA    +A  L  ++       +W  
Sbjct: 849 GLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWET 908

Query: 529 LLSGCVLH---------------------------------VGRFQDAEALRSGSQKKGI 555
           LL  C +H                                  GR+ D   +R   + +GI
Sbjct: 909 LLGACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGI 968

Query: 556 IKIPGISFL 564
            K PG S++
Sbjct: 969 RKEPGRSWI 977



 Score =  218 bits (556), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 140/553 (25%), Positives = 267/553 (48%), Gaps = 26/553 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + S+ L++ Y K   + +A  +F E+P ++V+SW+ +I  Y+  GF +K+ + F  M 
Sbjct: 61  DIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQ 120

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
            +G +PN  T + +L A      LE  + IH  ++K G + D                  
Sbjct: 121 NAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLP 180

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +F G+    +VS N ++  +      ++ + LF      G+ P+ VT + ++    
Sbjct: 181 RARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFT 240

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
                   + IH LT++ GL  D+ V  +++ M     D+D+A Q F+    +DV+ +  
Sbjct: 241 TPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNA 300

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++       +  +A + +  MR   +  +    L++++  +    L+ GK +H+ +   G
Sbjct: 301 LIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDG 360

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
             S++++ N++I+MY++CGDL  +R +F  + ++ L+SW AII+GY +     EA+  + 
Sbjct: 361 HSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYK 420

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +M+ E       +T + +L+A    +A      +H     +G      + N L++ Y +C
Sbjct: 421 QMQSEGVKP-GRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRC 479

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G++  A  VFE     RDV+SWN++I G+  +G  ETA  L+ +M      PD+ T+ S+
Sbjct: 480 GSLMEAQNVFEGTQ-ARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASV 538

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L+ C +      G  I  + I E+ ++        ++++  R G L DA  +    L+  
Sbjct: 539 LSGCKNPEALELGKQIHGR-ITESGLQLDVNLGNALINMYIRCGSLQDARNVFHS-LQHR 596

Query: 522 GPNIWRALLSGCV 534
               W A++ GC 
Sbjct: 597 DVMSWTAMIGGCA 609



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 137/493 (27%), Positives = 244/493 (49%), Gaps = 24/493 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           DP   + LLS Y K G +  A  +F  I  ++VVS++ ++  Y+   + ++ +  F  M 
Sbjct: 162 DPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMS 221

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------- 106
             G+ P+  T + +L A      L+  + IH L V+ GL SD+                 
Sbjct: 222 SEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVD 281

Query: 107 -----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                F+G  +  +V  NA++A    +    +A   +   R  G+  N  T L+++  C 
Sbjct: 282 SAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACS 341

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
              +    +LIH    + G   DV + N+++ MY+   DL  A ++F  M  +D+ISW  
Sbjct: 342 TSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNA 401

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++  +   E  G+A++++++M+   +    V  L+L+S  A       GK +H  ++  G
Sbjct: 402 IIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSG 461

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           ++S   L+N+++ MY +CG L  +++VF     + ++SW ++I+G+ Q+G    A   F 
Sbjct: 462 IKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQ 521

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +M+ E+ +  D+IT  S+L+      ALE+  Q+HG   E+G     ++ N LI+ Y +C
Sbjct: 522 EMQNEELEP-DNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRC 580

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G++  A  VF  +   RDV+SW  +I G    G    A+ L+ +M   G  P  ST+ SI
Sbjct: 581 GSLQDARNVFHSLQH-RDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSI 639

Query: 462 LNACGHAGLTNDG 474
           L  C  +   ++G
Sbjct: 640 LKVCTSSACLDEG 652



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 126/444 (28%), Positives = 220/444 (49%), Gaps = 11/444 (2%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F+ +    ++S N++++ +      ++A  LF   + +G +PN +T ++++  C +   
Sbjct: 84  VFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAE 143

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
               + IH   IK G   D  V NS+L MY    DL  A Q+F  +  +DV+S+  M+GL
Sbjct: 144 LENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGL 203

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +    Y  + L +F +M    I  D V  +NL+        L  GK++H   V  GL S+
Sbjct: 204 YAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSD 263

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           +R+  +++ M  +CGD+DS++  F    ++ +V + A+I+   Q+G   EA  Q+ +MR 
Sbjct: 264 IRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRS 323

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
           +   +++  T +SIL A     ALE    +H    E G      + N LIS Y++CG++ 
Sbjct: 324 DGV-ALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLP 382

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            A  +F  M   RD++SWN II GY        A+ LY +M   G  P   T+L +L+AC
Sbjct: 383 KARELFYTMP-KRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSAC 441

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN- 524
            ++    DG +I   ++    +K +      ++++  R G L +A      + EG     
Sbjct: 442 ANSSAYADGKMIHEDILRSG-IKSNGHLANALMNMYRRCGSLMEAQ----NVFEGTQARD 496

Query: 525 --IWRALLSGCVLHVGRFQDAEAL 546
              W ++++G   H G ++ A  L
Sbjct: 497 VISWNSMIAGHAQH-GSYETAYKL 519



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 113/458 (24%), Positives = 226/458 (49%), Gaps = 28/458 (6%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ L++ Y + G + EA+N+F+    ++V+SW+ +I G++ +G +E + K F  M    L
Sbjct: 469 ANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEEL 528

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL--------------------- 106
            P++ T   VL      + LEL + IHG + + GL+ D+                     
Sbjct: 529 EPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARN 588

Query: 107 -FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
            F  L++  ++S  A++ G  +     +A+ LF   +  G  P   T  ++++ C +   
Sbjct: 589 VFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSAC 648

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
               + +    +  G  LD  V N+++  YS    +  A ++F +M  +D++SW +++  
Sbjct: 649 LDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAG 708

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +        A++   +M++  ++ +  + ++L++  +    L+ GK++HA++V   LQ +
Sbjct: 709 YAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGD 768

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           +R+  ++I+MY+KCG    ++ VF+ I EK++V+W A+I+ Y Q+G A +AL  F  M +
Sbjct: 769 VRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYAQHGLASKALGFFNCMEK 828

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN--CLISSYSKCGN 403
           E     D  T  SIL+A      +    Q+   + E+ +    ++++  CL+    +   
Sbjct: 829 EGIKP-DGSTFTSILSACNHAGLVLEGYQIFS-SMESEYGVLPTIEHYGCLVGLLGRARR 886

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALA 441
              A  +  +M F  D   W T++    +  HG  ALA
Sbjct: 887 FQEAETLINQMPFPPDAAVWETLLGACRI--HGNIALA 922



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 117/420 (27%), Positives = 209/420 (49%), Gaps = 16/420 (3%)

Query: 151 VTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMY-SCLMDLDAAIQIFR 209
            T + +++ C         + IH   ++  +  D+ ++N +++MY  C   LDA  Q+F+
Sbjct: 28  ATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAH-QVFK 86

Query: 210 EMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKR 269
           EM  +DVISW  ++  +    +   A ++F EM+ +  I + +  +++++      +L+ 
Sbjct: 87  EMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELEN 146

Query: 270 GKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQ 329
           GK++H+Q++  G Q + R+ NS+++MY KCGDL  +R VF  I+ + +VS+  ++  Y Q
Sbjct: 147 GKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQ 206

Query: 330 NGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS 389
               +E L  F +M  E   S D +T +++L A    + L+   ++H +  E G      
Sbjct: 207 KAYVKECLGLFGQMSSEGI-SPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIR 265

Query: 390 VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
           V   L++   +CG+VD A   F+     RDVV +N +I     +GH   A   Y++M   
Sbjct: 266 VGTALVTMCVRCGDVDSAKQAFKGTAD-RDVVVYNALIAALAQHGHNVEAFEQYYRMRSD 324

Query: 450 GEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSD 509
           G   + +TYLSILNAC  +     G +I + + E+      Q     ++ + AR G L  
Sbjct: 325 GVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIG-NALISMYARCGDLPK 383

Query: 510 ASGLAGKLLEGMGPN---IWRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPG-ISFLN 565
           A     +L   M       W A+++G   +  R    EA+R   Q +     PG ++FL+
Sbjct: 384 AR----ELFYTMPKRDLISWNAIIAG---YARREDRGEAMRLYKQMQSEGVKPGRVTFLH 436



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 69/139 (49%), Gaps = 1/139 (0%)

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
           Q +    +  T V++L        L    ++H    EA       + N LI+ Y KC +V
Sbjct: 19  QPRPTETERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSV 78

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
             A+ VF+EM   RDV+SWN++I  Y   G  + A  L+ +M   G +P+  TY+SIL A
Sbjct: 79  LDAHQVFKEMP-RRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTA 137

Query: 465 CGHAGLTNDGLVIFNQMIE 483
           C       +G  I +Q+I+
Sbjct: 138 CYSPAELENGKKIHSQIIK 156


>gi|222625199|gb|EEE59331.1| hypothetical protein OsJ_11408 [Oryza sativa Japonica Group]
          Length = 691

 Score =  268 bits (685), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 172/577 (29%), Positives = 290/577 (50%), Gaps = 28/577 (4%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D + ++ LL+ Y K G +  A  LFD +PE+N+VS+  ++  ++  G  E +   F  +
Sbjct: 94  LDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRL 153

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY----LV 116
              G   N F +  +L  A  +    LA  +H    K G + + F   GL + Y    LV
Sbjct: 154 RWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLV 213

Query: 117 S----------------CNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
           S                  A+V+ +  N   + A  +F+  R SG  PN   + +V++  
Sbjct: 214 SDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAA 273

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
           V L S  L + IHG  IK     +  V  ++LDMY+   D+  A   F  +   DVI  +
Sbjct: 274 VCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLS 333

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+  +        A ++F  + +S ++ +  +L +++     +  L  GKQ+H   +  
Sbjct: 334 FMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKI 393

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           G +S+L + N+++  Y+KC D+DSS  +F+ + + + VSW  I+ G+ Q+G   EAL+ F
Sbjct: 394 GHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVF 453

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            +M+  +      +T  S+L A    A++    Q+H    ++ F     + N LI +Y+K
Sbjct: 454 CEMQAAQMPCTQ-VTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAK 512

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CG +  A  VF+ +   RD++SWN II GY ++G    AL L+ +M ++    +  T+++
Sbjct: 513 CGYIRDALKVFQHL-MERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVA 571

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           +L+ C   GL N GL +F+ M  ++ +KPS EHY C+V LL RAG L+DA    G +   
Sbjct: 572 LLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSA 631

Query: 521 MGPNIWRALLSGCVLH----VGRFQDAEALRSGSQKK 553
               +WRALLS C++H    +GRF   + L    Q +
Sbjct: 632 PSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDE 668



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 119/480 (24%), Positives = 225/480 (46%), Gaps = 29/480 (6%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           S L+  Y     + +AE++F+ I  K+ V W+ ++  YS N   E + + FS M +SG  
Sbjct: 201 SGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCK 260

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKF---------GLESDLFEGLKN------- 112
           PN F +  VL AA  L ++ L + IHG  +K          G   D++    +       
Sbjct: 261 PNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLA 320

Query: 113 ----PY--LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
               PY  ++  + +++ +  +   +QA  LF     S ++PN  ++ +V++ C  +   
Sbjct: 321 FEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQL 380

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
              + IH   IK+G   D+ V N+++D Y+   D+D++++IF  +   + +SW  ++  F
Sbjct: 381 DFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGF 440

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
                  +AL +F EM+ +++ C  V   +++   A    ++   Q+H  +      ++ 
Sbjct: 441 SQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDT 500

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            + NS+I  Y+KCG +  +  VF  + E+ ++SW AIISGY  +G A +AL  F +M + 
Sbjct: 501 VIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKS 560

Query: 347 KTDSVDSITLVSILTASGELAALEICLQL-HGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
             +S D IT V++L+       +   L L   +  + G         C++    + G ++
Sbjct: 561 NVESND-ITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLN 619

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALY--HKMTETGEVPDSSTYLSILN 463
            A     ++      + W  ++    +  H   AL  +   K+ E  E  D +TY+ + N
Sbjct: 620 DALQFIGDIPSAPSAMVWRALLSSCII--HKNVALGRFSAEKILEI-EPQDETTYVLLSN 676



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 154/341 (45%), Gaps = 15/341 (4%)

Query: 157 IRGCVALGSRALCELIHGLTIKLGLI--LDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
           ++GC+A G       +HG  ++ G +  LD+   N +L+MY  L  L +A ++F  M  +
Sbjct: 66  LQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPER 125

Query: 215 DVISWTRMMGLFV---DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGK 271
           +++S+  ++       DFE A     +FR +R      +   L  ++ +   +       
Sbjct: 126 NMVSFVTLVQAHAQRGDFEAAA---ALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAG 182

Query: 272 QLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNG 331
            +H+     G      + + +I  YS C  +  +  VFN I  K  V WTA++S Y +N 
Sbjct: 183 GVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSEND 242

Query: 332 CAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ 391
           C   A   F KMR       +   L S+L A+  L ++ +   +HG A +        V 
Sbjct: 243 CPENAFRVFSKMRVSGCKP-NPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVG 301

Query: 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE 451
             L+  Y+KCG++  A + FE + +  DV+  + +I  Y  +   E A  L+ ++  +  
Sbjct: 302 GALLDMYAKCGDIKDARLAFEMIPY-DDVILLSFMISRYAQSNQNEQAFELFLRLMRSSV 360

Query: 452 VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQE 492
           +P+  +  S+L AC     TN   + F + I  + +K   E
Sbjct: 361 LPNEYSLSSVLQAC-----TNMVQLDFGKQIHNHAIKIGHE 396


>gi|15228265|ref|NP_190368.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207726|sp|Q9STS9.1|PP268_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g47840
 gi|4741201|emb|CAB41867.1| putative protein [Arabidopsis thaliana]
 gi|332644818|gb|AEE78339.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 706

 Score =  268 bits (685), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 174/614 (28%), Positives = 292/614 (47%), Gaps = 59/614 (9%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML- 64
           ++ +  L +   +G ++ A  +FD++P  ++VSW+ +I  Y      ++++  FS M + 
Sbjct: 41  FDPNSHLRSLINAGNLRAARQVFDKMPHGDIVSWTSIIKRYVTANNSDEALILFSAMRVV 100

Query: 65  -SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGL------------- 110
              + P++  +  VL A     N+    S+H   VK  L S ++ G              
Sbjct: 101 DHAVSPDTSVLSVVLKACGQSSNIAYGESLHAYAVKTSLLSSVYVGSSLLDMYKRVGKID 160

Query: 111 -------KNPY--LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                  + P+   V+  AI+ G ++   +++ +  F+    S  + +  T    ++ C 
Sbjct: 161 KSCRVFSEMPFRNAVTWTAIITGLVHAGRYKEGLTYFSEMSRSEELSDTYTFAIALKACA 220

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            L      + IH   I  G +  + V NS+  MY+   ++   + +F  M  +DV+SWT 
Sbjct: 221 GLRQVKYGKAIHTHVIVRGFVTTLCVANSLATMYTECGEMQDGLCLFENMSERDVVSWTS 280

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++  +        A++ F +MR S++  +     ++ S  A L  L  G+QLH  V+  G
Sbjct: 281 LIVAYKRIGQEVKAVETFIKMRNSQVPPNEQTFASMFSACASLSRLVWGEQLHCNVLSLG 340

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           L   L +SNS++ MYS CG+L S+  +F  +  + ++SW+ II GY Q G   E    F 
Sbjct: 341 LNDSLSVSNSMMKMYSTCGNLVSASVLFQGMRCRDIISWSTIIGGYCQAGFGEEGFKYFS 400

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
            MRQ  T   D   L S+L+ SG +A +E   Q+H +A   G  +  +V++ LI+ YSKC
Sbjct: 401 WMRQSGTKPTD-FALASLLSVSGNMAVIEGGRQVHALALCFGLEQNSTVRSSLINMYSKC 459

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G++  A ++F E     D+VS   +I GY  +G  + A+ L+ K  + G  PDS T++S+
Sbjct: 460 GSIKEASMIFGETD-RDDIVSLTAMINGYAEHGKSKEAIDLFEKSLKVGFRPDSVTFISV 518

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L AC H+G  + G   FN M E   ++P++EHYGC+VDLL RAG LSDA  +  ++    
Sbjct: 519 LTACTHSGQLDLGFHYFNMMQETYNMRPAKEHYGCMVDLLCRAGRLSDAEKMINEMSWKK 578

Query: 522 GPNIWRALLSGCVLH---------------------------------VGRFQDAEALRS 548
              +W  LL  C                                     G  ++A  +R 
Sbjct: 579 DDVVWTTLLIACKAKGDIERGRRAAERILELDPTCATALVTLANIYSSTGNLEEAANVRK 638

Query: 549 GSQKKGIIKIPGIS 562
             + KG+IK PG S
Sbjct: 639 NMKAKGVIKEPGWS 652


>gi|147846491|emb|CAN79511.1| hypothetical protein VITISV_014157 [Vitis vinifera]
          Length = 1007

 Score =  268 bits (685), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 165/543 (30%), Positives = 280/543 (51%), Gaps = 26/543 (4%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTM 74
           Y K+G +  A  +FD +  ++ VSW+I+IHG+   G  +  +  F    +    PN  T+
Sbjct: 94  YMKTGALDSALFVFDSMRSRDSVSWNIMIHGHLSRGASDXGLWWFRQARVIAFEPNVSTL 153

Query: 75  VGVLVAAAGLQNLELARSIHGLMVKFGL---------------------ESDLFEGLKNP 113
           V  + A   L  +E    +HG +++ G                        +LF+ +   
Sbjct: 154 VLAIHACRSLGAMEEGLKMHGYIIRSGFLDIPSVQNSLLSMYADNDMERAEELFDEMCER 213

Query: 114 YLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVP-NAVTMLTVIRGCVALGSRALCELI 172
            ++S + ++ G++       A+ LF     +  +  + +TM++V++ C   G  ++   +
Sbjct: 214 DVISWSVMIGGYVQTGEAXMALQLFLEMXSNAXIELDGITMVSVLKACANTGDISMGRSV 273

Query: 173 HGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYA 232
           HG+ I  GL  D+ V NS++DMYS   D ++A + F EM C++ +SW  ++   V  E  
Sbjct: 274 HGVVICRGLDYDLFVGNSIIDMYSKXDDHESAFKAFNEMPCRNTVSWNSIISGLVRTEKH 333

Query: 233 GDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSI 292
            +AL +F  M K+    D V L+NL+       D  + K +H+ V+  G +    + NS+
Sbjct: 334 SEALSLFYSMGKAGFRADEVTLVNLLQSCKYFVDPFQCKFIHSIVIRWGYELNEFVINSL 393

Query: 293 IAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVD 352
           I  YSKC  ++ +  +F+++  K  VSW+A+I+G+   G   EA+  F +M Q + +  +
Sbjct: 394 IDAYSKCDLIELAWKLFDRLKTKDTVSWSAMIAGFNHCGKPDEAIALFQEMNQAQ-EKPN 452

Query: 353 SITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFE 412
            +T++S+L A    A L+     HGI    G     +V   ++  Y+KCG + L+   F+
Sbjct: 453 GVTILSLLEAFSVSADLKRSKWAHGIXIRRGLAAEVAVGTAILDMYAKCGEIGLSRKAFD 512

Query: 413 EMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTN 472
           ++   +++VSW  +I   G+NG    ALAL  +M   G  P+  T LS+L+AC H GL  
Sbjct: 513 QIP-EKNIVSWGAMIAACGMNGLARDALALLSEMKLHGLKPNXVTTLSVLSACSHGGLVE 571

Query: 473 DGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM--GPNIWRALL 530
           +GL  F  M++++ V+P  EHY C+VD+L RAG L+ A  L  K+ E M  G  +W ALL
Sbjct: 572 EGLSFFENMVQDHGVEPGLEHYSCMVDMLXRAGKLNXAMNLIEKMPERMRDGAGLWGALL 631

Query: 531 SGC 533
           S C
Sbjct: 632 SAC 634



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 129/439 (29%), Positives = 230/439 (52%), Gaps = 36/439 (8%)

Query: 5   PYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML 64
           P   + LLS Y     ++ AE LFDE+ E++V+SWS++I GY   G    +++ F  M  
Sbjct: 185 PSVQNSLLSMY-ADNDMERAEELFDEMCERDVISWSVMIGGYVQTGEAXMALQLFLEMXS 243

Query: 65  SGLLP-NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG-------------- 109
           +  +  +  TMV VL A A   ++ + RS+HG+++  GL+ DLF G              
Sbjct: 244 NAXIELDGITMVSVLKACANTGDISMGRSVHGVVICRGLDYDLFVGNSIIDMYSKXDDHE 303

Query: 110 --------LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                   +     VS N+I++G +  +   +A+ LF     +G   + VT++ +++ C 
Sbjct: 304 SAFKAFNEMPCRNTVSWNSIISGLVRTEKHSEALSLFYSMGKAGFRADEVTLVNLLQSCK 363

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
                  C+ IH + I+ G  L+  V NS++D YS    ++ A ++F  ++ KD +SW+ 
Sbjct: 364 YFVDPFQCKFIHSIVIRWGYELNEFVINSLIDAYSKCDLIELAWKLFDRLKTKDTVSWSA 423

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+  F       +A+ +F+EM +++   + V +L+L+   ++  DLKR K  H   +  G
Sbjct: 424 MIAGFNHCGKPDEAIALFQEMNQAQEKPNGVTILSLLEAFSVSADLKRSKWAHGIXIRRG 483

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           L +E+ +  +I+ MY+KCG++  SR  F+QI EK++VSW A+I+    NG AR+AL    
Sbjct: 484 LAAEVAVGTAILDMYAKCGEIGLSRKAFDQIPEKNIVSWGAMIAACGMNGLARDALALLS 543

Query: 342 KMRQE--KTDSVDSITLVSILTASG----ELAALEICLQLHGIAFEAGFPRYRSVQNCLI 395
           +M+    K + V +++++S  +  G     L+  E  +Q HG+  E G   Y    +C++
Sbjct: 544 EMKLHGLKPNXVTTLSVLSACSHGGLVEEGLSFFENMVQDHGV--EPGLEHY----SCMV 597

Query: 396 SSYSKCGNVDLAYIVFEEM 414
               + G ++ A  + E+M
Sbjct: 598 DMLXRAGKLNXAMNLIEKM 616



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/358 (27%), Positives = 172/358 (48%), Gaps = 6/358 (1%)

Query: 113 PYLVSCNAIVAGFINNKLFQ--QAVLLFNFFRGSGLVPNAVTML-TVIRGCVALGSRALC 169
           P L + N  +    N K +   +A   ++  + +G      T++ ++++ C +L  R   
Sbjct: 10  PKLPNWNLGIKDSTNRKWWDSWEACSRYHQMKKAGAQLTDPTLVHSILKACSSLPVRH-G 68

Query: 170 ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDF 229
           + IH   +K G     S  NS  D Y     LD+A+ +F  M  +D +SW  M+   +  
Sbjct: 69  KSIHASLLKQGFDSLTSTGNSXXDFYMKTGALDSALFVFDSMRSRDSVSWNIMIHGHLSR 128

Query: 230 EYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLS 289
             +   L  FR+ R      +   L+  I     LG ++ G ++H  ++  G      + 
Sbjct: 129 GASDXGLWWFRQARVIAFEPNVSTLVLAIHACRSLGAMEEGLKMHGYIIRSGFLDIPSVQ 188

Query: 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD 349
           NS+++MY+   D++ +  +F+++ E+ ++SW+ +I GYVQ G A  AL  F++M      
Sbjct: 189 NSLLSMYAD-NDMERAEELFDEMCERDVISWSVMIGGYVQTGEAXMALQLFLEMXSNAXI 247

Query: 350 SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYI 409
            +D IT+VS+L A      + +   +HG+    G      V N +I  YSK  + + A+ 
Sbjct: 248 ELDGITMVSVLKACANTGDISMGRSVHGVVICRGLDYDLFVGNSIIDMYSKXDDHESAFK 307

Query: 410 VFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
            F EM   R+ VSWN+II G         AL+L++ M + G   D  T +++L +C +
Sbjct: 308 AFNEMP-CRNTVSWNSIISGLVRTEKHSEALSLFYSMGKAGFRADEVTLVNLLQSCKY 364



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/357 (22%), Positives = 165/357 (46%), Gaps = 26/357 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + ++  Y K    + A   F+E+P +N VSW+ +I G      H +++  F  M 
Sbjct: 285 DLFVGNSIIDMYSKXDDHESAFKAFNEMPCRNTVSWNSIISGLVRTEKHSEALSLFYSMG 344

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
            +G   +  T+V +L +     +    + IH +++++G E +                  
Sbjct: 345 KAGFRADEVTLVNLLQSCKYFVDPFQCKFIHSIVIRWGYELNEFVINSLIDAYSKCDLIE 404

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               LF+ LK    VS +A++AGF +     +A+ LF     +   PN VT+L+++    
Sbjct: 405 LAWKLFDRLKTKDTVSWSAMIAGFNHCGKPDEAIALFQEMNQAQEKPNGVTILSLLEAFS 464

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
                   +  HG+ I+ GL  +V+V  ++LDMY+   ++  + + F ++  K+++SW  
Sbjct: 465 VSADLKRSKWAHGIXIRRGLAAEVAVGTAILDMYAKCGEIGLSRKAFDQIPEKNIVSWGA 524

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG- 280
           M+        A DAL +  EM+   +  + V  L+++S  +  G ++ G      +V   
Sbjct: 525 MIAACGMNGLARDALALLSEMKLHGLKPNXVTTLSVLSACSHGGLVEEGLSFFENMVQDH 584

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVS---WTAIISGYVQNGCAR 334
           G++  L   + ++ M  + G L+ + ++  ++ E+       W A++S    +G +R
Sbjct: 585 GVEPGLEHYSCMVDMLXRAGKLNXAMNLIEKMPERMRDGAGLWGALLSACRSSGNSR 641



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 106/206 (51%), Gaps = 8/206 (3%)

Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISG 326
           ++ GK +HA ++  G  S     NS    Y K G LDS+  VF+ +  +  VSW  +I G
Sbjct: 65  VRHGKSIHASLLKQGFDSLTSTGNSXXDFYMKTGALDSALFVFDSMRSRDSVSWNIMIHG 124

Query: 327 YVQNGCAREALNQFIKMRQEKTDSVDS--ITLVSILTASGELAALEICLQLHGIAFEAGF 384
           ++  G +   L  F   RQ +  + +    TLV  + A   L A+E  L++HG    +GF
Sbjct: 125 HLSRGASDXGLWWF---RQARVIAFEPNVSTLVLAIHACRSLGAMEEGLKMHGYIIRSGF 181

Query: 385 PRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH 444
               SVQN L+S Y+   +++ A  +F+EM   RDV+SW+ +I GY   G    AL L+ 
Sbjct: 182 LDIPSVQNSLLSMYAD-NDMERAEELFDEMC-ERDVISWSVMIGGYVQTGEAXMALQLFL 239

Query: 445 KMTETGEVP-DSSTYLSILNACGHAG 469
           +M     +  D  T +S+L AC + G
Sbjct: 240 EMXSNAXIELDGITMVSVLKACANTG 265


>gi|15241714|ref|NP_198751.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171567|sp|Q9FLZ9.1|PP405_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g39350
 gi|10177683|dbj|BAB11009.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007040|gb|AED94423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 677

 Score =  268 bits (685), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 179/614 (29%), Positives = 303/614 (49%), Gaps = 61/614 (9%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL- 67
           S L   Y   G I  A  LF+E+P+ +++S++IVI  Y   G +  ++  F  M+  G+ 
Sbjct: 53  STLSVTYALCGHITYARKLFEEMPQSSLLSYNIVIRMYVREGLYHDAISVFIRMVSEGVK 112

Query: 68  -LPNSFTMVGVLVAAAGLQNLELARSIHGLMVK-------------------FG---LES 104
            +P+ +T   V  AA  L++++L   +HG +++                   FG   +  
Sbjct: 113 CVPDGYTYPFVAKAAGELKSMKLGLVVHGRILRSWFGRDKYVQNALLAMYMNFGKVEMAR 172

Query: 105 DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
           D+F+ +KN  ++S N +++G+  N     A+++F++     +  +  T+++++  C  L 
Sbjct: 173 DVFDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLK 232

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
              +   +H L  +  L   + V N++++MY     +D A  +F  ME +DVI+WT M+ 
Sbjct: 233 DLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFDRMERRDVITWTCMIN 292

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            + +     +AL++ R M+   +  + V + +L+SV      +  GK LH   V   + S
Sbjct: 293 GYTEDGDVENALELCRLMQFEGVRPNAVTIASLVSVCGDALKVNDGKCLHGWAVRQQVYS 352

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           ++ +  S+I+MY+KC  +D    VF+  ++     W+AII+G VQN    +AL  F +MR
Sbjct: 353 DIIIETSLISMYAKCKRVDLCFRVFSGASKYHTGPWSAIIAGCVQNELVSDALGLFKRMR 412

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
           +E  +  +  TL S+L A   LA L   + +H    + GF         L+  YSKCG +
Sbjct: 413 REDVEP-NIATLNSLLPAYAALADLRQAMNIHCYLTKTGFMSSLDAATGLVHVYSKCGTL 471

Query: 405 DLAYIVF---EEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           + A+ +F   +E    +DVV W  +I GYG++G G  AL ++ +M  +G  P+  T+ S 
Sbjct: 472 ESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNEITFTSA 531

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           LNAC H+GL  +GL +F  M+E  K      HY C+VDLL RAG L +A  L   +    
Sbjct: 532 LNACSHSGLVEEGLTLFRFMLEHYKTLARSNHYTCIVDLLGRAGRLDEAYNLITTIPFEP 591

Query: 522 GPNIWRALLSGCVLH---------------------------------VGRFQDAEALRS 548
              +W ALL+ CV H                                 +GR++D E +RS
Sbjct: 592 TSTVWGALLAACVTHENVQLGEMAANKLFELEPENTGNYVLLANIYAALGRWKDMEKVRS 651

Query: 549 GSQKKGIIKIPGIS 562
             +  G+ K PG S
Sbjct: 652 MMENVGLRKKPGHS 665



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 113/451 (25%), Positives = 208/451 (46%), Gaps = 28/451 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + LL+ Y   GK++ A ++FD +  ++V+SW+ +I GY  NG+   ++  F  M+
Sbjct: 151 DKYVQNALLAMYMNFGKVEMARDVFDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMV 210

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLM--VKFGLESDLFEGLKNPYL------ 115
              +  +  T+V +L     L++LE+ R++H L+   + G + ++   L N YL      
Sbjct: 211 NESVDLDHATIVSMLPVCGHLKDLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMD 270

Query: 116 --------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                         ++   ++ G+  +   + A+ L    +  G+ PNAVT+ +++  C 
Sbjct: 271 EARFVFDRMERRDVITWTCMINGYTEDGDVENALELCRLMQFEGVRPNAVTIASLVSVCG 330

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
                   + +HG  ++  +  D+ +  S++ MY+    +D   ++F          W+ 
Sbjct: 331 DALKVNDGKCLHGWAVRQQVYSDIIIETSLISMYAKCKRVDLCFRVFSGASKYHTGPWSA 390

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++   V  E   DAL +F+ MR+  +  +   L +L+   A L DL++   +H  +   G
Sbjct: 391 IIAGCVQNELVSDALGLFKRMRREDVEPNIATLNSLLPAYAALADLRQAMNIHCYLTKTG 450

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE----KSLVSWTAIISGYVQNGCAREAL 337
             S L  +  ++ +YSKCG L+S+  +FN I E    K +V W A+ISGY  +G    AL
Sbjct: 451 FMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNAL 510

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ-NCLIS 396
             F++M +    + + IT  S L A      +E  L L     E      RS    C++ 
Sbjct: 511 QVFMEMVRSGV-TPNEITFTSALNACSHSGLVEEGLTLFRFMLEHYKTLARSNHYTCIVD 569

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
              + G +D AY +   + F      W  ++
Sbjct: 570 LLGRAGRLDEAYNLITTIPFEPTSTVWGALL 600



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 142/267 (53%), Gaps = 5/267 (1%)

Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISG 326
           + + K LH  V+ GG  S   LS ++   Y+ CG +  +R +F ++ + SL+S+  +I  
Sbjct: 31  ISKTKALHCHVITGGRVSGHILS-TLSVTYALCGHITYARKLFEEMPQSSLLSYNIVIRM 89

Query: 327 YVQNGCAREALNQFIKMRQEKTDSV-DSITLVSILTASGELAALEICLQLHGIAFEAGFP 385
           YV+ G   +A++ FI+M  E    V D  T   +  A+GEL ++++ L +HG    + F 
Sbjct: 90  YVREGLYHDAISVFIRMVSEGVKCVPDGYTYPFVAKAAGELKSMKLGLVVHGRILRSWFG 149

Query: 386 RYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHK 445
           R + VQN L++ Y   G V++A  VF+ M   RDV+SWNT+I GY  NG+   AL ++  
Sbjct: 150 RDKYVQNALLAMYMNFGKVEMARDVFDVMKN-RDVISWNTMISGYYRNGYMNDALMMFDW 208

Query: 446 MTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAG 505
           M       D +T +S+L  CGH      G  + ++++EE ++    E    +V++  + G
Sbjct: 209 MVNESVDLDHATIVSMLPVCGHLKDLEMGRNV-HKLVEEKRLGDKIEVKNALVNMYLKCG 267

Query: 506 CLSDASGLAGKLLEGMGPNIWRALLSG 532
            + +A  +  + +E      W  +++G
Sbjct: 268 RMDEARFVFDR-MERRDVITWTCMING 293


>gi|302805550|ref|XP_002984526.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
 gi|300147914|gb|EFJ14576.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
          Length = 792

 Score =  268 bits (685), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 164/565 (29%), Positives = 286/565 (50%), Gaps = 33/565 (5%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L++ Y K G ++EA  +FD I  ++ VSW+ +I  Y+ NGF ++++  +  M   G+ P+
Sbjct: 187 LVNMYGKCGSVEEARKVFDGIKNRDAVSWTSMISSYANNGFCDEALDLYQQMDADGIQPD 246

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------------FEG 109
           S T    L+A   L +    ++IH  +V   +ESD                      FE 
Sbjct: 247 SITFTSALLACTKLVD---GKAIHARIVSSNMESDFVGSALINMYARCGDVSSARQAFEK 303

Query: 110 LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALC 169
           ++N ++V   +++  ++    +++A+ L+      G+  + VT +T +  C +LG+    
Sbjct: 304 IQNKHVVCWTSLMTAYVQTCHYREALDLYGRMDHEGVHADGVTYVTALGACASLGALKEG 363

Query: 170 ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIF-REMECKDVISWTRMMGLFVD 228
           + IH    + G    + V+ ++L MY+   +LDAA  +F R  + ++V  WT M+  +  
Sbjct: 364 KAIHSRVFECGF-QSLVVHTALLTMYAKCGELDAARAVFNRVRQKRNVYCWTAMISAYAQ 422

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
             +  +AL+++ +M       +     N+++  +  GDL+ G ++H  V    L S + +
Sbjct: 423 AGHTQEALELYDQMVAEGTRPNEYTFSNVLAACSSSGDLEAGMKIHGHVENSELASNVAV 482

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
            N+++ MY+KCG L+ ++S F     K LVSW A+I  Y Q+G  REAL+ +  M  +  
Sbjct: 483 QNALVTMYAKCGSLELAKSAFEASGRKDLVSWNAMIGAYAQHGLGREALDLYQTMTSQGV 542

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFE-AGFPRYRSVQNCLISSYSKCGNVDLA 407
              D +T+ S L+A     +L++  ++H    +   F     VQ  L++ Y +CG ++ A
Sbjct: 543 LP-DEVTIASSLSACAISGSLQLGREIHSRVLKNQSFRSSLMVQTALVNMYGRCGRLETA 601

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
             +FE+MG  RDV+SW  +   Y   GH +  L LY +M   G  P+  T+ SIL  C H
Sbjct: 602 RSMFEDMG-QRDVLSWTAMTSAYAQQGHADQVLDLYLEMVLHGIRPNEITFTSILVGCSH 660

Query: 468 AGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWR 527
           AGL   G+  F +M  E++V P +EH+ C+VDLL R+G L DA  L   +        W 
Sbjct: 661 AGLLARGVECFLEMQSEHEVVPIREHFLCMVDLLGRSGRLRDAEALVESMPYQPDSVAWL 720

Query: 528 ALLSGCVLHVGRFQDAEALRSGSQK 552
            +L  C  H     DA+  +  +++
Sbjct: 721 TVLGSCKTH----SDADTAKRAARR 741



 Score =  191 bits (485), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 125/440 (28%), Positives = 225/440 (51%), Gaps = 18/440 (4%)

Query: 107 FEGLKNPYLVSC-NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           F+   +   V+C N +++ +  N L+ +A+ L++     G  P+ +T   V+  C A+GS
Sbjct: 100 FQNFASIKAVACYNQMLSAYGKNGLWNRALELYHRMCEEGPEPDKITYFIVLGSCSAVGS 159

Query: 166 RALCELIHGLTIKLGLIL--DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
                 IH   I+   I+  ++S+ N++++MY     ++ A ++F  ++ +D +SWT M+
Sbjct: 160 LREAREIHASIIEAPQIIRDNLSLQNALVNMYGKCGSVEEARKVFDGIKNRDAVSWTSMI 219

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
             + +  +  +AL ++++M    I  D++   + +     L D   GK +HA++V   ++
Sbjct: 220 SSYANNGFCDEALDLYQQMDADGIQPDSITFTSALLACTKLVD---GKAIHARIVSSNME 276

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
           S+  + +++I MY++CGD+ S+R  F +I  K +V WT++++ YVQ    REAL+ + +M
Sbjct: 277 SDF-VGSALINMYARCGDVSSARQAFEKIQNKHVVCWTSLMTAYVQTCHYREALDLYGRM 335

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
             E   + D +T V+ L A   L AL+    +H   FE GF     V   L++ Y+KCG 
Sbjct: 336 DHEGVHA-DGVTYVTALGACASLGALKEGKAIHSRVFECGFQSL-VVHTALLTMYAKCGE 393

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           +D A  VF  +   R+V  W  +I  Y   GH + AL LY +M   G  P+  T+ ++L 
Sbjct: 394 LDAARAVFNRVRQKRNVYCWTAMISAYAQAGHTQEALELYDQMVAEGTRPNEYTFSNVLA 453

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
           AC  +G    G+ I    +E +++  +      +V + A+ G L     LA    E  G 
Sbjct: 454 ACSSSGDLEAGMKIHGH-VENSELASNVAVQNALVTMYAKCGSLE----LAKSAFEASGR 508

Query: 524 N---IWRALLSGCVLH-VGR 539
                W A++     H +GR
Sbjct: 509 KDLVSWNAMIGAYAQHGLGR 528



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 126/509 (24%), Positives = 238/509 (46%), Gaps = 34/509 (6%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           S L++ Y + G +  A   F++I  K+VV W+ ++  Y     + +++  +  M   G+ 
Sbjct: 282 SALINMYARCGDVSSARQAFEKIQNKHVVCWTSLMTAYVQTCHYREALDLYGRMDHEGVH 341

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES---------------------DLF 107
            +  T V  L A A L  L+  ++IH  + + G +S                      +F
Sbjct: 342 ADGVTYVTALGACASLGALKEGKAIHSRVFECGFQSLVVHTALLTMYAKCGELDAARAVF 401

Query: 108 EGLKNPYLVSC-NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
             ++    V C  A+++ +      Q+A+ L++     G  PN  T   V+  C + G  
Sbjct: 402 NRVRQKRNVYCWTAMISAYAQAGHTQEALELYDQMVAEGTRPNEYTFSNVLAACSSSGDL 461

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
                IHG      L  +V+V N+++ MY+    L+ A   F     KD++SW  M+G +
Sbjct: 462 EAGMKIHGHVENSELASNVAVQNALVTMYAKCGSLELAKSAFEASGRKDLVSWNAMIGAY 521

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG-GLQSE 285
                  +AL +++ M    ++ D V + + +S  AI G L+ G+++H++V+     +S 
Sbjct: 522 AQHGLGREALDLYQTMTSQGVLPDEVTIASSLSACAISGSLQLGREIHSRVLKNQSFRSS 581

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           L +  +++ MY +CG L+++RS+F  + ++ ++SWTA+ S Y Q G A + L+ +++M  
Sbjct: 582 LMVQTALVNMYGRCGRLETARSMFEDMGQRDVLSWTAMTSAYAQQGHADQVLDLYLEMVL 641

Query: 346 EKTDSVDSITLVSIL---TASGELA-ALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
                 + IT  SIL   + +G LA  +E  L++     E      R    C++    + 
Sbjct: 642 HGIRP-NEITFTSILVGCSHAGLLARGVECFLEMQS---EHEVVPIREHFLCMVDLLGRS 697

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G +  A  + E M +  D V+W T++     +   +TA     ++ E    P++++  S+
Sbjct: 698 GRLRDAEALVESMPYQPDSVAWLTVLGSCKTHSDADTAKRAARRVKELD--PENTSLYSL 755

Query: 462 LNAC-GHAGLTNDGLVIFNQMIEENKVKP 489
           L++    AGL  + L +   M E    KP
Sbjct: 756 LSSIFTAAGLPQEALEVQLSMKEMGLKKP 784



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 102/392 (26%), Positives = 185/392 (47%), Gaps = 14/392 (3%)

Query: 156 VIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC-K 214
           +++ C  LGS A  +L+H   ++ G   +  + N ++ MY    ++  A   F+     K
Sbjct: 48  LLQQCGRLGSLAEGKLVHRHLLRTGHGRNQFLGNLLIQMYGNCGEIHLARAAFQNFASIK 107

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
            V  + +M+  +        AL+++  M +     D +    ++   + +G L+  +++H
Sbjct: 108 AVACYNQMLSAYGKNGLWNRALELYHRMCEEGPEPDKITYFIVLGSCSAVGSLREAREIH 167

Query: 275 AQVVLGG--LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC 332
           A ++     ++  L L N+++ MY KCG ++ +R VF+ I  +  VSWT++IS Y  NG 
Sbjct: 168 ASIIEAPQIIRDNLSLQNALVNMYGKCGSVEEARKVFDGIKNRDAVSWTSMISSYANNGF 227

Query: 333 AREALNQFIKMRQEKTDSVDSITLVSILTASGELA-ALEICLQLHGIAFEAGFPRYRSVQ 391
             EAL+ + +M  +     DSIT  S L A  +L     I  ++     E+ F     V 
Sbjct: 228 CDEALDLYQQMDADGIQP-DSITFTSALLACTKLVDGKAIHARIVSSNMESDF-----VG 281

Query: 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE 451
           + LI+ Y++CG+V  A   FE++   + VV W +++  Y    H   AL LY +M   G 
Sbjct: 282 SALINMYARCGDVSSARQAFEKIQN-KHVVCWTSLMTAYVQTCHYREALDLYGRMDHEGV 340

Query: 452 VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDAS 511
             D  TY++ L AC   G   +G  I +++ E      S   +  ++ + A+ G L  A 
Sbjct: 341 HADGVTYVTALGACASLGALKEGKAIHSRVFECG--FQSLVVHTALLTMYAKCGELDAAR 398

Query: 512 GLAGKLLEGMGPNIWRALLSGCVLHVGRFQDA 543
            +  ++ +      W A++S      G  Q+A
Sbjct: 399 AVFNRVRQKRNVYCWTAMISA-YAQAGHTQEA 429



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 67/153 (43%), Gaps = 5/153 (3%)

Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
           +AL Q  + R    +  D +     L   G L +L     +H      G  R + + N L
Sbjct: 29  DALEQLDQRRHGYVELYDEL-----LQQCGRLGSLAEGKLVHRHLLRTGHGRNQFLGNLL 83

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           I  Y  CG + LA   F+    ++ V  +N ++  YG NG    AL LYH+M E G  PD
Sbjct: 84  IQMYGNCGEIHLARAAFQNFASIKAVACYNQMLSAYGKNGLWNRALELYHRMCEEGPEPD 143

Query: 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEENKV 487
             TY  +L +C   G   +   I   +IE  ++
Sbjct: 144 KITYFIVLGSCSAVGSLREAREIHASIIEAPQI 176


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  268 bits (684), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 163/557 (29%), Positives = 284/557 (50%), Gaps = 25/557 (4%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C D +  S L++ Y K   ++ A  + +E+P ++V  W+  +   +     +++++ F  
Sbjct: 21  CPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEAVQLFYL 80

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL--------------- 106
           M  + +  N F    ++ AAA L +     SIH  + K+G ESD+               
Sbjct: 81  MRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTMYMKTQS 140

Query: 107 -------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                  F+ +    L S N +++GF + +   Q   +       G  PN  T +++++ 
Sbjct: 141 VENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILKT 200

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C + G     + IHG  IK G+  D  + NS++++Y+     + A ++F E+  +DV+SW
Sbjct: 201 CASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSW 260

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           T ++  FV   Y G  L+IF +M       +    ++++   + L D+  GKQ+HAQ+V 
Sbjct: 261 TALITGFVAEGY-GSGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVK 319

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
             L     +  +++ MY+K   L+ + ++FN++ ++ L +WT I++GY Q+G   +A+  
Sbjct: 320 NSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKC 379

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           FI+M++E     +  TL S L+    +A L+   QLH +A +AG      V + L+  Y+
Sbjct: 380 FIQMQREGVKP-NEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYA 438

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           KCG V+ A +VF+ +   RD VSWNTII GY  +G G  AL  +  M + G VPD  T++
Sbjct: 439 KCGCVEDAEVVFDGL-VSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFI 497

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519
            +L+AC H GL  +G   FN + +   + P+ EHY C+VD+L RAG   +      ++  
Sbjct: 498 GVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKL 557

Query: 520 GMGPNIWRALLSGCVLH 536
                IW  +L  C +H
Sbjct: 558 TSNVLIWETVLGACKMH 574



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 115/500 (23%), Positives = 227/500 (45%), Gaps = 31/500 (6%)

Query: 2   CIDPYNSSKLLSN-----YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSM 56
           C   + S  L+SN     Y K+  ++     F  +  +N+ S + ++ G+      ++  
Sbjct: 117 CKYGFESDILISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGP 176

Query: 57  KAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--LFEGLKNPY 114
           +    +++ G  PN +T + +L   A   +L   ++IHG ++K G+  D  L+  L N Y
Sbjct: 177 RILIQLLVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVY 236

Query: 115 --------------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTML 154
                               +VS  A++ GF+    +   + +FN     G  PN  T +
Sbjct: 237 AKCGSANYACKVFGEIPERDVVSWTALITGFVAEG-YGSGLRIFNQMLAEGFNPNMYTFI 295

Query: 155 TVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
           +++R C +L    L + +H   +K  L  +  V  +++DMY+    L+ A  IF  +  +
Sbjct: 296 SILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKR 355

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
           D+ +WT ++  +        A+K F +M++  +  +   L + +S  + +  L  G+QLH
Sbjct: 356 DLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLH 415

Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
           +  +  G   ++ ++++++ MY+KCG ++ +  VF+ +  +  VSW  II GY Q+G   
Sbjct: 416 SMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGG 475

Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQ-LHGIAFEAGFPRYRSVQNC 393
           +AL  F  M  E T   D +T + +L+A   +  +E   +  + ++   G         C
Sbjct: 476 KALKAFEAMLDEGT-VPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYAC 534

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           ++    + G         EEM    +V+ W T++    ++G+ E       K+ E     
Sbjct: 535 MVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEI 594

Query: 454 DSSTYLSILNACGHAGLTND 473
           DS+ Y+ + N     G+ +D
Sbjct: 595 DSN-YILLSNMFAAKGMWDD 613



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 98/372 (26%), Positives = 180/372 (48%), Gaps = 11/372 (2%)

Query: 177 IKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDAL 236
           IK G+  D  + +S++++Y     L  A Q+  EM  +DV  W + +          +A+
Sbjct: 16  IKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEAV 75

Query: 237 KIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMY 296
           ++F  MR +RI  +     +LIS  A LGD   G+ +HA V   G +S++ +SN+ + MY
Sbjct: 76  QLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTMY 135

Query: 297 SKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITL 356
            K   +++    F  +  ++L S   ++SG+       +     I++  E  +  +  T 
Sbjct: 136 MKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEP-NMYTF 194

Query: 357 VSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGF 416
           +SIL        L     +HG   ++G      + N L++ Y+KCG+ + A  VF E+  
Sbjct: 195 ISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIP- 253

Query: 417 LRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLV 476
            RDVVSW  +I G+   G+G + L ++++M   G  P+  T++SIL +C      + G  
Sbjct: 254 ERDVVSWTALITGFVAEGYG-SGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQ 312

Query: 477 IFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
           +  Q++ +N +  +      +VD+ A+   L DA  +  +L++       R L +  V+ 
Sbjct: 313 VHAQIV-KNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIK-------RDLFAWTVIV 364

Query: 537 VGRFQDAEALRS 548
            G  QD +  ++
Sbjct: 365 AGYAQDGQGEKA 376



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/264 (21%), Positives = 121/264 (45%), Gaps = 4/264 (1%)

Query: 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
           K++  +V+  G+  +  L +S++ +Y KC  L  +R V  ++  + +  W   +S     
Sbjct: 9   KKIIFRVIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSP 68

Query: 331 GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV 390
              +EA+  F  MR  +   ++     S+++A+  L        +H    + GF     +
Sbjct: 69  YPLQEAVQLFYLMRHTRI-RLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILI 127

Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
            N  ++ Y K  +V+  +  F+ M  + ++ S N ++ G+      +    +  ++   G
Sbjct: 128 SNAFVTMYMKTQSVENGWQFFKAM-MIENLASRNNLLSGFCDTETCDQGPRILIQLLVEG 186

Query: 451 EVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
             P+  T++SIL  C   G  N+G  I  Q+I+   + P    +  +V++ A+ G  + A
Sbjct: 187 FEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSG-INPDSHLWNSLVNVYAKCGSANYA 245

Query: 511 SGLAGKLLEGMGPNIWRALLSGCV 534
             + G++ E    + W AL++G V
Sbjct: 246 CKVFGEIPERDVVS-WTALITGFV 268


>gi|147772562|emb|CAN67343.1| hypothetical protein VITISV_038220 [Vitis vinifera]
          Length = 732

 Score =  268 bits (684), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 170/577 (29%), Positives = 291/577 (50%), Gaps = 29/577 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + L+  Y K+G I+ A  +FD++ EK  V+W+ +I GY+  G    S++ F+ M 
Sbjct: 71  DVYVGTSLIDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQMR 130

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
            + ++P+ + +  VL A + L+ LE  + IH  +++ G E D                  
Sbjct: 131 ETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVK 190

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               LF+ +    ++S   +++G++ N    +A+ LF      G  P+     +V+  C 
Sbjct: 191 AGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCG 250

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
           +L +      +H  TIK  L  +  V N ++DMY+    L  A ++F  M  ++VIS+  
Sbjct: 251 SLEALEQGRQVHAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKKVFDVMAEQNVISYNA 310

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+  +   E   +AL++F EMR        +  ++L+ V+A L  L+  KQ+H  ++  G
Sbjct: 311 MIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKXG 370

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           +  +L   +++I +YSKC  +  +R VF ++ EK +V W A+  GY Q+    EAL  + 
Sbjct: 371 VSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYS 430

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
            + Q      +  T  +++TA+  LA+L    Q H    + G      V N L+  Y+KC
Sbjct: 431 TL-QFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKC 489

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G+++ A  +F      RDVV WN++I  +  +G  E AL ++ +M + G  P+  T++++
Sbjct: 490 GSIEEARKMFNS-SIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAV 548

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L+AC HAG   DGL  FN M     +KP  EHY CVV LL R+G L +A     K+    
Sbjct: 549 LSACSHAGXVEDGLNHFNSM-PGFGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEP 607

Query: 522 GPNIWRALLSGCVL----HVGRFQDAEALRSGSQKKG 554
              +WR+LLS C +     +G++    A+ +  +  G
Sbjct: 608 AAIVWRSLLSACRIAGNVELGKYAAEMAISTDPKDSG 644



 Score =  197 bits (502), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 138/505 (27%), Positives = 245/505 (48%), Gaps = 34/505 (6%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+  Y K  ++K    LFD++  KN++SW+ +I GY  N F  ++MK F  M   G  P+
Sbjct: 179 LIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPD 238

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY-------------- 114
            F    VL +   L+ LE  R +H   +K  LES+ F   GL + Y              
Sbjct: 239 GFACTSVLTSCGSLEALEQGRQVHAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKKVFD 298

Query: 115 ------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
                 ++S NA++ G+ + +   +A+ LF+  R     P+ +T ++++    +L +  L
Sbjct: 299 VMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALEL 358

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
            + IHGL IK G+ LD+   ++++D+YS    +  A  +F EM  KD++ W  M   +  
Sbjct: 359 SKQIHGLIIKXGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQ 418

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
                +ALK++  ++ SR   +      LI+  + L  L+ G+Q H Q+V  GL     +
Sbjct: 419 HLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFV 478

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
           +N+++ MY+KCG ++ +R +FN    + +V W ++IS + Q+G A EAL  F +M +E  
Sbjct: 479 TNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGI 538

Query: 349 DSVDSITLVSILTASGELAALEICLQ----LHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
              + +T V++L+A      +E  L     + G   + G   Y     C++S   + G +
Sbjct: 539 QP-NYVTFVAVLSACSHAGXVEDGLNHFNSMPGFGIKPGTEHYA----CVVSLLGRSGKL 593

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALY-HKMTETGEVPDSSTYLSILN 463
             A    E+M      + W +++    + G+ E  L  Y  +M  + +  DS +Y+ + N
Sbjct: 594 FEAKEFIEKMPIEPAAIVWRSLLSACRIAGNVE--LGKYAAEMAISTDPKDSGSYILLSN 651

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVK 488
                G+  D   + ++M     VK
Sbjct: 652 IFASKGMWADVKKVRDRMDSSEVVK 676



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 136/504 (26%), Positives = 241/504 (47%), Gaps = 33/504 (6%)

Query: 50  GFHEKSMKAFSHMML-SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL-- 106
           G+ E+++  F  +   SG  PN F +  V+ A   L  +E    +HG +V+ G + D+  
Sbjct: 15  GYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYV 74

Query: 107 --------------------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGL 146
                               F+ L     V+   I+AG+        ++ LF   R + +
Sbjct: 75  GTSLIDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQMRETNV 134

Query: 147 VPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQ 206
           VP+   + +V+  C  L      + IH   ++ G  +DVSV N ++D Y+    + A  +
Sbjct: 135 VPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRK 194

Query: 207 IFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGD 266
           +F +M  K++ISWT M+  ++   +  +A+K+F EM +     D  A  ++++    L  
Sbjct: 195 LFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSLEA 254

Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISG 326
           L++G+Q+HA  +   L+S   + N +I MY+K   L  ++ VF+ + E++++S+ A+I G
Sbjct: 255 LEQGRQVHAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKKVFDVMAEQNVISYNAMIEG 314

Query: 327 YVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPR 386
           Y       EAL  F +MR  +      +T VS+L  S  L ALE+  Q+HG+  + G   
Sbjct: 315 YSSQEKLSEALELFHEMRV-RLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKXGVSL 373

Query: 387 YRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM 446
                + LI  YSKC  V  A  VFEEM   +D+V WN + +GY  +   E AL LY  +
Sbjct: 374 DLFAGSALIDVYSKCSYVKDARHVFEEMN-EKDIVVWNAMFFGYTQHLENEEALKLYSTL 432

Query: 447 TETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGC 506
             + + P+  T+ +++ A  +      G    NQ+++   +         +VD+ A+ G 
Sbjct: 433 QFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMG-LDFCPFVTNALVDMYAKCGS 491

Query: 507 LSDASGLAGKLLEGMGPNIWRALL 530
           + +A  +          +IWR ++
Sbjct: 492 IEEARKM-------FNSSIWRDVV 508



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 89/184 (48%), Gaps = 22/184 (11%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  S L+  Y K   +K+A ++F+E+ EK++V W+ +  GY+ +  +E+++K +S +
Sbjct: 373 LDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTL 432

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY------ 114
             S   PN FT   ++ AA+ L +L   +  H  +VK GL+   F    L + Y      
Sbjct: 433 QFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSI 492

Query: 115 --------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                         +V  N++++    +   ++A+ +F      G+ PN VT + V+  C
Sbjct: 493 EEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSAC 552

Query: 161 VALG 164
              G
Sbjct: 553 SHAG 556


>gi|222625907|gb|EEE60039.1| hypothetical protein OsJ_12814 [Oryza sativa Japonica Group]
          Length = 852

 Score =  268 bits (684), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 177/625 (28%), Positives = 310/625 (49%), Gaps = 59/625 (9%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  S L+  Y   G + +A  +FD + E++ V W++++ GY   G    +++ F  M 
Sbjct: 180 DMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMR 239

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
            SG  PN  T+   L  +A   +L     +H L VK+GLES+                  
Sbjct: 240 ASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLD 299

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               LF  +    LV+ N +++G + N    QA+LLF   + SG+ P++VT+++++    
Sbjct: 300 DGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALT 359

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            L      + +HG  ++  + +DV + ++++D+Y     +  A  ++   +  DV+  + 
Sbjct: 360 DLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGST 419

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+  +V    + +A+K+FR + +  I  + VA+ +++   A +  +K G++LH+  +   
Sbjct: 420 MISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNA 479

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
            +    + ++++ MY+KCG LD S  +F++I+ K  V+W ++IS + QNG   EALN F 
Sbjct: 480 YEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFR 539

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +M  E      ++T+ S+L+A   L A+    ++HG+  +         ++ LI  Y KC
Sbjct: 540 EMCMEGV-KYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKC 598

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           GN++ A+ VFE M   ++ VSWN+II  YG  G  + +++L   M E G   D  T+L++
Sbjct: 599 GNLEWAHRVFESMP-EKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLAL 657

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           ++AC HAG   +GL +F  M EE ++ P  EH+ C+VDL +RAG L  A  L   +    
Sbjct: 658 VSACAHAGQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKP 717

Query: 522 GPNIWRALLSGCVLH---------------------------------VGRFQDAEALRS 548
              IW ALL  C +H                                  GR+     +R 
Sbjct: 718 DAGIWGALLHACRVHRNVELAEIASQELFKLDPHNSGYYVLMSNINAVAGRWDGVSKVRR 777

Query: 549 GSQKKGIIKIPGISF--LNSTSRDF 571
             +   + KIPG S+  +N+TS  F
Sbjct: 778 LMKDTKVQKIPGYSWVDVNNTSHLF 802



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 128/487 (26%), Positives = 240/487 (49%), Gaps = 33/487 (6%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNV---VSWSIVIHGYSINGFHEKSM----KAFSH 61
           ++L+  Y  + + ++A  +F  +P       + W+ +I G ++ G +  ++    K ++H
Sbjct: 79  TRLVGMYVLARRFRDAVAVFSSLPRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAH 138

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL--------------- 106
              S  LP+S T   V+ + A L  + L R +H      GL+ D+               
Sbjct: 139 P--SAPLPDSHTFPYVVKSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKMYANGGL 196

Query: 107 -------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                  F+G+     V  N ++ G++       AV LF   R SG  PN  T+   +  
Sbjct: 197 LWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSV 256

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
                       +H L +K GL  +V+V N+++ MY+    LD   ++F  M   D+++W
Sbjct: 257 SATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTW 316

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
             M+   V   +   AL +F +M+KS I  D+V L++L+     L    +GK+LH  +V 
Sbjct: 317 NGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVR 376

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
             +  ++ L ++++ +Y KC  +  ++SV++      +V  + +ISGYV NG ++EA+  
Sbjct: 377 NCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKM 436

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           F +   E+    +++ + S+L A   +AA+++  +LH  A +  +     V++ L+  Y+
Sbjct: 437 F-RYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYA 495

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           KCG +DL++ +F ++   +D V+WN++I  +  NG  E AL L+ +M   G    + T  
Sbjct: 496 KCGRLDLSHYIFSKIS-AKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTIS 554

Query: 460 SILNACG 466
           S+L+AC 
Sbjct: 555 SVLSACA 561



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 92/320 (28%), Positives = 155/320 (48%), Gaps = 12/320 (3%)

Query: 153 MLTVIRGCVALGSRALCELIHGLTIKLGL-ILDVSVNNSVLDMYSCLMDLDAAIQIFREM 211
           +L V+RGCV+    +L   +HG  +  GL   D ++   ++ MY        A+ +F  +
Sbjct: 42  LLAVLRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSL 101

Query: 212 E-----CKDVISWTRMMGLFVDFEYAGDALKIFREM--RKSRIICDTVALLNLISVNAIL 264
                 C    +W  + GL +  +Y   AL  + +M    S  + D+     ++   A L
Sbjct: 102 PRGAAACALPWNWL-IRGLTMAGDYRS-ALLFYLKMWAHPSAPLPDSHTFPYVVKSCAAL 159

Query: 265 GDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAII 324
           G +  G+ +H      GL  ++ + +++I MY+  G L  +R VF+ + E+  V W  ++
Sbjct: 160 GAIALGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMM 219

Query: 325 SGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGF 384
            GYV+ G    A+  F  MR    +  +  TL   L+ S   + L   +QLH +A + G 
Sbjct: 220 DGYVKAGSVSSAVELFGDMRASGCEP-NFATLACFLSVSATESDLFFGVQLHTLAVKYGL 278

Query: 385 PRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH 444
               +V N L+S Y+KC  +D  + +F  M    D+V+WN +I G   NG  + AL L+ 
Sbjct: 279 ESEVAVANTLVSMYAKCKCLDDGWKLFGLMP-RDDLVTWNGMISGCVQNGFVDQALLLFC 337

Query: 445 KMTETGEVPDSSTYLSILNA 464
            M ++G  PDS T +S+L A
Sbjct: 338 DMQKSGIRPDSVTLVSLLPA 357



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 159/327 (48%), Gaps = 25/327 (7%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  S L+  YFK   ++ A++++D     +VV  S +I GY +NG  ++++K F ++
Sbjct: 381 MDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYL 440

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
           +  G+ PN+  +  VL A A +  ++L + +H   +K   E                   
Sbjct: 441 LEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRL 500

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +F  +     V+ N++++ F  N   ++A+ LF      G+  + VT+ +V+  C
Sbjct: 501 DLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSAC 560

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
            +L +    + IHG+ IK  +  D+   ++++DMY    +L+ A ++F  M  K+ +SW 
Sbjct: 561 ASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWN 620

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++  +  +    +++ + R M++     D V  L L+S  A  G ++ G +L  + +  
Sbjct: 621 SIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEGLRLF-RCMTE 679

Query: 281 GLQSELRLSN--SIIAMYSKCGDLDSS 305
             Q   R+ +   ++ +YS+ G LD +
Sbjct: 680 EYQIAPRMEHFACMVDLYSRAGKLDKA 706


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  268 bits (684), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 146/500 (29%), Positives = 256/500 (51%), Gaps = 35/500 (7%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F+ L++P +++  +++  F +  LF +A+  F   R SG  P+     +V++ C  +  
Sbjct: 61  VFKTLESPPVLAWKSVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMD 120

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
               E +HG  ++LG+  D+   N++++MYS L+ +D+  ++F  M  KDV+S+  ++  
Sbjct: 121 LRFGESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAG 180

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +       DAL++ REM  S +  D   L +++ + +   D+ +GK++H  V+  G+ S+
Sbjct: 181 YAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSD 240

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           + + +S++ MY+K   ++ S  VF+ +  +  +SW ++++GYVQNG   EAL  F +M  
Sbjct: 241 VYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVS 300

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
            K     ++   S++ A   LA L +  QLHG     GF R   + + L+  YSKCGN+ 
Sbjct: 301 AKVRP-GAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQ 359

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            A  +F+ M  L D VSW  II G+ ++GHG  A++L+ +M   G  P+   ++++L AC
Sbjct: 360 AARKIFDRMN-LHDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTAC 418

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI 525
            H GL ++    FN M +   +    EHY  V DLL RAG L +A     K+      ++
Sbjct: 419 SHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSV 478

Query: 526 WRALLSGCVLHV---------------------------------GRFQDAEALRSGSQK 552
           W  LLS C +H                                  GR+++   LR   +K
Sbjct: 479 WSTLLSSCSVHKNLELAEKVAEKIFTIDSENMGAYVLMCNMYASNGRWKEMAKLRLRVRK 538

Query: 553 KGIIKIPGISFLNSTSRDFG 572
           KG+ K P  S++   ++  G
Sbjct: 539 KGLRKKPACSWIEMKNKTHG 558



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 103/408 (25%), Positives = 191/408 (46%), Gaps = 20/408 (4%)

Query: 155 TVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
           T+I+    + S++  + +H   I+   +   S +  V+ +Y+ L  L  A+ +F+ +E  
Sbjct: 10  TLIKNPTRIKSKSQAKQLHAQFIRTQSLSHTSAS-IVISIYTNLKLLHEALLVFKTLESP 68

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
            V++W  ++  F D      AL  F EMR S    D     +++    ++ DL+ G+ +H
Sbjct: 69  PVLAWKSVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVH 128

Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
             +V  G+  +L   N+++ MYSK   +DS R VF  +  K +VS+  +I+GY Q+G   
Sbjct: 129 GFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYE 188

Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
           +AL    +M        D+ TL S+L    E   +    ++HG     G      + + L
Sbjct: 189 DALRMVREMGTSDLKP-DAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSL 247

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           +  Y+K   ++ +  VF  + + RD +SWN+++ GY  NG    AL L+ +M      P 
Sbjct: 248 VDMYAKSARIEDSERVFSHL-YRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPG 306

Query: 455 SSTYLSILNACGHAGLTNDGLVIFNQMIE----ENKVKPSQEHYGCVVDLLARAGCLSDA 510
           +  + S++ AC H    + G  +   ++      N    S      +VD+ ++ G +  A
Sbjct: 307 AVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGRNIFIAS-----ALVDMYSKCGNIQAA 361

Query: 511 SGLAGKLLEGMGPN---IWRALLSGCVLHVGRFQDAEALRSGSQKKGI 555
                K+ + M  +    W A++ G  LH G   +A +L    +++G+
Sbjct: 362 R----KIFDRMNLHDEVSWTAIIMGHALH-GHGHEAVSLFEEMKRQGV 404



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 174/346 (50%), Gaps = 24/346 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + L++ Y K   I     +F+ +P K+VVS++ VI GY+ +G +E +++    M 
Sbjct: 139 DLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMG 198

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPYL------ 115
            S L P++FT+  VL   +   ++   + IHG +++ G++SD++ G  L + Y       
Sbjct: 199 TSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIE 258

Query: 116 --------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                         +S N++VAG++ N  + +A+ LF     + + P AV   +VI  C 
Sbjct: 259 DSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACA 318

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            L +  L + +HG  ++ G   ++ + ++++DMYS   ++ AA +IF  M   D +SWT 
Sbjct: 319 HLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTA 378

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG-KQLHAQVVLG 280
           ++       +  +A+ +F EM++  +  + VA + +++  + +G +       ++   + 
Sbjct: 379 IIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVY 438

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQI-TEKSLVSWTAIIS 325
           GL  EL    ++  +  + G L+ +    +++  E +   W+ ++S
Sbjct: 439 GLNQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLS 484


>gi|19697432|gb|AAL93067.1|AC093180_14 hypothetical protein [Oryza sativa Japonica Group]
          Length = 1012

 Score =  268 bits (684), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 179/617 (29%), Positives = 301/617 (48%), Gaps = 57/617 (9%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D + ++ LL+ Y K G +  A  LFD +PE+N+VS+  ++  ++  G  E +   F  +
Sbjct: 94  LDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRL 153

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY----LV 116
              G   N F +  +L  A  +    LA  +H    K G + + F   GL + Y    LV
Sbjct: 154 RWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLV 213

Query: 117 S----------------CNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
           S                  A+V+ +  N   + A  +F+  R SG  PN   + +V++  
Sbjct: 214 SDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAA 273

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
           V L S  L + IHG  IK     +  V  ++LDMY+   D+  A   F  +   DVI  +
Sbjct: 274 VCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLS 333

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+  +        A ++F  + +S ++ +  +L +++     +  L  GKQ+H   +  
Sbjct: 334 FMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKI 393

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           G +S+L + N+++  Y+KC D+DSS  +F+ + + + VSW  I+ G+ Q+G   EAL+ F
Sbjct: 394 GHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVF 453

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            +M+  +      +T  S+L A    A++    Q+H    ++ F     + N LI +Y+K
Sbjct: 454 CEMQAAQMPCT-QVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAK 512

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CG +  A  VF+ +   RD++SWN II GY ++G    AL L+ +M ++    +  T+++
Sbjct: 513 CGYIRDALKVFQHL-MERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVA 571

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           +L+ C   GL N GL +F+ M  ++ +KPS EHY C+V LL RAG L+DA    G +   
Sbjct: 572 LLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSA 631

Query: 521 MGPNIWRALLSGCVLH----VGRF----------QDAEA-------------------LR 547
               +WRALLS C++H    +GRF          QD                      LR
Sbjct: 632 PSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQVALLR 691

Query: 548 SGSQKKGIIKIPGISFL 564
              +  G+ K+PG+S++
Sbjct: 692 KSMRNIGVRKVPGLSWV 708



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 154/341 (45%), Gaps = 15/341 (4%)

Query: 157 IRGCVALGSRALCELIHGLTIKLGLI--LDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
           ++GC+A G       +HG  ++ G +  LD+   N +L+MY  L  L +A ++F  M  +
Sbjct: 66  LQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPER 125

Query: 215 DVISWTRMMGLFV---DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGK 271
           +++S+  ++       DFE A     +FR +R      +   L  ++ +   +       
Sbjct: 126 NMVSFVTLVQAHAQRGDFEAAA---ALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAG 182

Query: 272 QLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNG 331
            +H+     G      + + +I  YS C  +  +  VFN I  K  V WTA++S Y +N 
Sbjct: 183 GVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSEND 242

Query: 332 CAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ 391
           C   A   F KMR       +   L S+L A+  L ++ +   +HG A +        V 
Sbjct: 243 CPENAFRVFSKMRVSGCKP-NPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVG 301

Query: 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE 451
             L+  Y+KCG++  A + FE + +  DV+  + +I  Y  +   E A  L+ ++  +  
Sbjct: 302 GALLDMYAKCGDIKDARLAFEMIPY-DDVILLSFMISRYAQSNQNEQAFELFLRLMRSSV 360

Query: 452 VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQE 492
           +P+  +  S+L AC     TN   + F + I  + +K   E
Sbjct: 361 LPNEYSLSSVLQAC-----TNMVQLDFGKQIHNHAIKIGHE 396


>gi|296082505|emb|CBI21510.3| unnamed protein product [Vitis vinifera]
          Length = 746

 Score =  268 bits (684), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 165/565 (29%), Positives = 287/565 (50%), Gaps = 30/565 (5%)

Query: 17  KSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML-SGLLPNSFTMV 75
           KS ++  A  +FD++P KN+++WS ++  YS  G+ E+++  F  +   SG  PN F + 
Sbjct: 96  KSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLA 155

Query: 76  GVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------------FEGLKNP 113
            V+ A   L  +E    +HG +V+ G + D+                      F+ L   
Sbjct: 156 SVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEK 215

Query: 114 YLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIH 173
             V+   I+AG+        ++ LF   R + +VP+   + +V+  C  L      + IH
Sbjct: 216 TAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIH 275

Query: 174 GLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAG 233
              ++ G  +DVSV N ++D Y+    + A  ++F +M  K++ISWT M+  ++   +  
Sbjct: 276 AYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDW 335

Query: 234 DALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSII 293
           +A+K+F EM +     D  A  ++++       L++G+Q+HA  +   L+S+  + N +I
Sbjct: 336 EAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLI 395

Query: 294 AMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDS 353
            MY+K   L  ++ VF+ + E++++S+ A+I GY       EAL  F +MR  +    + 
Sbjct: 396 DMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRV-RLQKPNE 454

Query: 354 ITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEE 413
            T  +++TA+  LA+L    Q H    + G      V N L+  Y+KCG+++ A  +F  
Sbjct: 455 FTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNS 514

Query: 414 MGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTND 473
               RDVV WN++I  +  +G  E AL ++ +M + G  P+  T++++L+AC HAG   D
Sbjct: 515 -SIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGRVED 573

Query: 474 GLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGC 533
           GL  FN M     +KP  EHY CVV LL R+G L +A     K+       +WR+LLS C
Sbjct: 574 GLNHFNSM-PGFGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSAC 632

Query: 534 VL----HVGRFQDAEALRSGSQKKG 554
            +     +G++    A+ +  +  G
Sbjct: 633 RIAGNVELGKYAAEMAISTDPKDSG 657



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 139/515 (26%), Positives = 246/515 (47%), Gaps = 40/515 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + L+  Y K+G I+EA  +FD++ EK  V+W+ +I GY+  G    S++ F+ M 
Sbjct: 185 DVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMR 244

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
            + ++P+ + +  VL A + L+ LE  + IH  +++ G E D                  
Sbjct: 245 ETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVK 304

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               LF+ +    ++S   +++G++ N    +A+ LF      G  P+     +V+  C 
Sbjct: 305 AGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSC- 363

Query: 162 ALGSRALCE---LIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
             GSR   E    +H  TIK  L  D  V N ++DMY+    L  A ++F  M  ++VIS
Sbjct: 364 --GSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVIS 421

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           +  M+  +   E   +AL++F EMR      +      LI+  + L  L+ G+Q H Q+V
Sbjct: 422 YNAMIEGYSSQEKLSEALELFHEMRVRLQKPNEFTFAALITAASNLASLRHGQQFHNQLV 481

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
             GL     ++N+++ MY+KCG ++ +R +FN    + +V W ++IS + Q+G A EAL 
Sbjct: 482 KMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALG 541

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQ----LHGIAFEAGFPRYRSVQNCL 394
            F +M +E     + +T V++L+A      +E  L     + G   + G   Y     C+
Sbjct: 542 MFREMMKEGIQP-NYVTFVAVLSACSHAGRVEDGLNHFNSMPGFGIKPGTEHYA----CV 596

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALY-HKMTETGEVP 453
           +S   + G +  A    E+M      + W +++    + G+ E  L  Y  +M  + +  
Sbjct: 597 VSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSACRIAGNVE--LGKYAAEMAISTDPK 654

Query: 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVK 488
           DS +Y+ + N     G+  D   + ++M     VK
Sbjct: 655 DSGSYILLSNIFASKGMWADVKKVRDRMDSSEVVK 689



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 121/461 (26%), Positives = 231/461 (50%), Gaps = 33/461 (7%)

Query: 93  IHGLMVKFGLESD----------------------LFEGLKNPYLVSCNAIVAGFINNKL 130
           IHG ++  GL+SD                      +F+ + +  L++ +++V+ +     
Sbjct: 71  IHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGY 130

Query: 131 FQQAVLLF-NFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNN 189
            ++A+++F +  R SG  PN   + +VIR C  LG       +HG  ++ G   DV V  
Sbjct: 131 SEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGT 190

Query: 190 SVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIIC 249
           S++D YS   +++ A  +F ++  K  ++WT ++  +     +  +L++F +MR++ ++ 
Sbjct: 191 SLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVP 250

Query: 250 DTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVF 309
           D   + +++S  ++L  L+ GKQ+HA V+  G + ++ + N +I  Y+KC  + + R +F
Sbjct: 251 DRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLF 310

Query: 310 NQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAAL 369
           +Q+  K+++SWT +ISGY+QN    EA+  F +M +      D     S+LT+ G   AL
Sbjct: 311 DQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKP-DGFACTSVLTSCGSREAL 369

Query: 370 EICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYG 429
           E   Q+H    +A       V+N LI  Y+K   +  A  VF+ M   ++V+S+N +I G
Sbjct: 370 EQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMA-EQNVISYNAMIEG 428

Query: 430 YGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKP 489
           Y        AL L+H+M    + P+  T+ +++ A  +      G    NQ+++   +  
Sbjct: 429 YSSQEKLSEALELFHEMRVRLQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMG-LDF 487

Query: 490 SQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALL 530
                  +VD+ A+ G + +A  +          +IWR ++
Sbjct: 488 CPFVTNALVDMYAKCGSIEEARKM-------FNSSIWRDVV 521


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  267 bits (683), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 163/538 (30%), Positives = 284/538 (52%), Gaps = 25/538 (4%)

Query: 24  AENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAG 83
           ++ LFDE P++ +   + ++  +S N  +++++  F  +  SG   +  ++  VL     
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 84  LQNLELARSIHGLMVKFGLESDL----------------------FEGLKNPYLVSCNAI 121
           L +  + + +H   +K G   D+                      F+ ++   +VS  ++
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 122 VAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGL 181
           +AG+  N L +QA+ LF+  +  G+ PN  T   V+ G  A G+      +H + IK GL
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGL 224

Query: 182 ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFRE 241
              + V NS+++MYS  + +  A  +F  ME ++ +SW  M+  FV      +A ++F  
Sbjct: 225 DSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYR 284

Query: 242 MRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGD 301
           MR   +         +I + A + ++   KQLH QV+  G   +L +  +++  YSKC +
Sbjct: 285 MRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSE 344

Query: 302 LDSSRSVFNQITE-KSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSIL 360
           +D +  +F  +   +++VSWTAIISGYVQNG    A+N F +MR+E+    +  T  S+L
Sbjct: 345 IDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVL 404

Query: 361 TA-SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRD 419
            A +   A++E   Q H  + ++GF     V + L++ Y+K GN++ A  VF+     RD
Sbjct: 405 NACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQ-VDRD 463

Query: 420 VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFN 479
           +VSWN++I GY  +G G+ +L ++ +M       D  T++ +++AC HAGL N+G   F+
Sbjct: 464 LVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFD 523

Query: 480 QMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHV 537
            M+++  + P+ EHY C+VDL +RAG L  A  L  K+    G  IWR LL+ C +H+
Sbjct: 524 LMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHL 581



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 132/491 (26%), Positives = 245/491 (49%), Gaps = 36/491 (7%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + L+  Y K+  +++ E +FDE+  KNVVSW+ ++ GY  NG +E+++K FS M L G+ 
Sbjct: 131 TSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIK 190

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG------------------- 109
           PN FT   VL   A    +E    +H +++K GL+S +F G                   
Sbjct: 191 PNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAV 250

Query: 110 ---LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
              ++N   VS N+++AGF+ N L  +A  LF   R  G+        TVI+ C  +   
Sbjct: 251 FDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEM 310

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME-CKDVISWTRMMGL 225
           +  + +H   IK G   D+++  +++  YS   ++D A ++F  M   ++V+SWT ++  
Sbjct: 311 SFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISG 370

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLN--LISVNAILGDLKRGKQLHAQVVLGGLQ 283
           +V       A+ +F +MR+   +       +  L +  A    +++GKQ H+  +  G  
Sbjct: 371 YVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFS 430

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
           + L +S++++ MY+K G+++S+  VF +  ++ LVSW ++ISGY Q+GC +++L  F +M
Sbjct: 431 NALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEM 490

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ-----NCLISSY 398
           R +  + +D IT + +++A      +    +     F+     Y  V      +C++  Y
Sbjct: 491 RSKNLE-LDGITFIGVISACTHAGLVNEGQRY----FDLMVKDYHIVPTMEHYSCMVDLY 545

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
           S+ G ++ A  +  +M F      W T++    V+ + +       K+    +  DS+ Y
Sbjct: 546 SRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISL-QPQDSAAY 604

Query: 459 LSILNACGHAG 469
           + + N    AG
Sbjct: 605 VLLSNIYATAG 615



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 2/81 (2%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           SS L++ Y K G I+ A  +F    ++++VSW+ +I GY+ +G  +KS+K F  M    L
Sbjct: 436 SSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNL 495

Query: 68  LPNSFTMVGVLVAA--AGLQN 86
             +  T +GV+ A   AGL N
Sbjct: 496 ELDGITFIGVISACTHAGLVN 516


>gi|357168001|ref|XP_003581434.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Brachypodium distachyon]
          Length = 757

 Score =  267 bits (683), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 170/576 (29%), Positives = 297/576 (51%), Gaps = 34/576 (5%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ L++ Y +    + A  +FDE+P KN VSW+ VI  ++ N     ++  FS M+ SG 
Sbjct: 79  NNHLITMYGRCAAPESARLVFDEMPAKNPVSWASVIAAHAQNRRSTDALGLFSSMLRSGT 138

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHG-------------------LMVKFGLESD--- 105
            P+ F +   + A A L ++ + R +H                    +  K GL +D   
Sbjct: 139 APDQFALGSTVRACAELGDIGVGRQVHAQAMKSENGSDLIVQNALVTMYSKSGLVADGFL 198

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLV-PNAVTMLTVIRGCVALG 164
           LF  ++    +S  +I+AGF       +A+ +F      G+  PN     +V   C  LG
Sbjct: 199 LFGRMREKDPISWGSIIAGFAQQGCEMEALQIFREMVAEGMHHPNEFHFGSVFSACGVLG 258

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
           S    E IH L++K  L  +     S+ DMY+    L++A ++F  ++  D++SW  ++ 
Sbjct: 259 SLEYGEQIHSLSVKYRLDHNSYAGCSLSDMYARCKKLESAKRVFYGIDAPDLVSWNSIIN 318

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
                    +A+ +  EMR S +  D + +  L+        ++ G+ +H+ +V  GL  
Sbjct: 319 ACSVEGLLSEAMVLLSEMRGSGLRPDGITVRGLLCACVGCDAIQHGRLMHSYLVKLGLDG 378

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           ++ + NS+++MY++C D  S+  VF++  ++ +V+W +I++  VQ+    E + +   + 
Sbjct: 379 DVSVCNSLLSMYARCMDFSSAMDVFHETRDRDVVTWNSILTACVQHQ-HLEVVFKLFNLL 437

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
           Q    S+D I+L ++L+AS EL   E+  Q+H   F+ G      + N LI +Y+KCG++
Sbjct: 438 QRSLPSLDRISLNNVLSASAELGYFEMVKQVHTCTFKVGLVNDTMLSNGLIDTYAKCGSL 497

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           D A  +FE MG   DV SW+++I GY  +G+   AL L+ +M   G  P+  T++ +L A
Sbjct: 498 DDAVKLFEMMGTNSDVFSWSSLIVGYAQSGYPRKALDLFARMRNLGVRPNHVTFVGVLTA 557

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C   GL ++G   ++ M  E+ V P++EH  CV+DLLARAG L++A+    ++     P+
Sbjct: 558 CSRVGLVDEGCYYYSIMEPEHGVLPTREHCSCVIDLLARAGRLTEAAKFVDQM--PFEPD 615

Query: 525 I--WRALLSGCVLHVGRFQDAEALRSGSQKKGIIKI 558
           I  W+ LL+G   H     D E  R  ++  GI+ I
Sbjct: 616 IVMWKTLLAGSKTH----NDVEMGRRAAE--GILNI 645



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 110/379 (29%), Positives = 181/379 (47%), Gaps = 14/379 (3%)

Query: 166 RALCE--LIHG---LTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
           RALC   L+H     +    L+ +  +NN ++ MY      ++A  +F EM  K+ +SW 
Sbjct: 52  RALCLGCLVHRHLLASPDPNLVRNTVLNNHLITMYGRCAAPESARLVFDEMPAKNPVSWA 111

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++        + DAL +F  M +S    D  AL + +   A LGD+  G+Q+HAQ +  
Sbjct: 112 SVIAAHAQNRRSTDALGLFSSMLRSGTAPDQFALGSTVRACAELGDIGVGRQVHAQAMKS 171

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
              S+L + N+++ MYSK G +     +F ++ EK  +SW +II+G+ Q GC  EAL  F
Sbjct: 172 ENGSDLIVQNALVTMYSKSGLVADGFLLFGRMREKDPISWGSIIAGFAQQGCEMEALQIF 231

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS-YS 399
            +M  E     +     S+ +A G L +LE   Q+H ++ +     + S   C +S  Y+
Sbjct: 232 REMVAEGMHHPNEFHFGSVFSACGVLGSLEYGEQIHSLSVKYRL-DHNSYAGCSLSDMYA 290

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           +C  ++ A  VF  +    D+VSWN+II    V G    A+ L  +M  +G  PD  T  
Sbjct: 291 RCKKLESAKRVFYGID-APDLVSWNSIINACSVEGLLSEAMVLLSEMRGSGLRPDGITVR 349

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519
            +L AC        G ++ + ++   K+    +   C   L   A C+ D S       E
Sbjct: 350 GLLCACVGCDAIQHGRLMHSYLV---KLGLDGDVSVCNSLLSMYARCM-DFSSAMDVFHE 405

Query: 520 GMGPNI--WRALLSGCVLH 536
               ++  W ++L+ CV H
Sbjct: 406 TRDRDVVTWNSILTACVQH 424



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 94/410 (22%), Positives = 186/410 (45%), Gaps = 35/410 (8%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y    L   Y +  K++ A+ +F  I   ++VSW+ +I+  S+ G   ++M   S M  S
Sbjct: 280 YAGCSLSDMYARCKKLESAKRVFYGIDAPDLVSWNSIINACSVEGLLSEAMVLLSEMRGS 339

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES--------------------- 104
           GL P+  T+ G+L A  G   ++  R +H  +VK GL+                      
Sbjct: 340 GLRPDGITVRGLLCACVGCDAIQHGRLMHSYLVKLGLDGDVSVCNSLLSMYARCMDFSSA 399

Query: 105 -DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
            D+F   ++  +V+ N+I+   + ++  +    LFN  + S    + +++  V+     L
Sbjct: 400 MDVFHETRDRDVVTWNSILTACVQHQHLEVVFKLFNLLQRSLPSLDRISLNNVLSASAEL 459

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK-DVISWTRM 222
           G   + + +H  T K+GL+ D  ++N ++D Y+    LD A+++F  M    DV SW+ +
Sbjct: 460 GYFEMVKQVHTCTFKVGLVNDTMLSNGLIDTYAKCGSLDDAVKLFEMMGTNSDVFSWSSL 519

Query: 223 MGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA--QVVLG 280
           +  +    Y   AL +F  MR   +  + V  + +++  + +G +  G   ++  +   G
Sbjct: 520 IVGYAQSGYPRKALDLFARMRNLGVRPNHVTFVGVLTACSRVGLVDEGCYYYSIMEPEHG 579

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISGYVQNG---CAREA 336
            L +    S  +I + ++ G L  +    +Q+  E  +V W  +++G   +      R A
Sbjct: 580 VLPTREHCS-CVIDLLARAGRLTEAAKFVDQMPFEPDIVMWKTLLAGSKTHNDVEMGRRA 638

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASG---ELAALEICLQLHGIAFEAG 383
               + +  + + S   + L +I +ASG   E A L+  ++  G+    G
Sbjct: 639 AEGILNI--DPSHSAAYVLLCNIYSASGDWNEFARLKKAMRSSGVKKSPG 686


>gi|224085073|ref|XP_002307479.1| predicted protein [Populus trichocarpa]
 gi|222856928|gb|EEE94475.1| predicted protein [Populus trichocarpa]
          Length = 1026

 Score =  267 bits (683), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 172/616 (27%), Positives = 300/616 (48%), Gaps = 59/616 (9%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y  S L+S Y K GK++ A+ +FD + E+NVV W+ ++ GY  NG+  + M+ F +M   
Sbjct: 363 YVGSSLVSMYAKCGKMEAAKKVFDTLNEQNVVLWNAMLGGYVQNGYANEVMELFFNMKSC 422

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG---------------- 109
           G  P+ FT   +L A A L+ L+L   +H +++K    S+LF G                
Sbjct: 423 GFYPDDFTYSSILSACACLKYLDLGHQLHSVIIKNKFASNLFVGNALVDMYAKSGALEDA 482

Query: 110 ------LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
                 ++N   VS N I+ G++  +   +A  LF      G++P+ V++ +++  C ++
Sbjct: 483 RQQFELIRNRDNVSWNVIIVGYVQEEDEVEAFHLFRRMNLLGILPDEVSLASILSACASV 542

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
                 + +H L++K G    +   +S++DMY+    +D+A +I   M  + V+S   ++
Sbjct: 543 RGLEQGKQVHCLSVKTGQETKLYSGSSLIDMYAKCGAIDSAHKILACMPERSVVSMNALI 602

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
             +        A+ +FR+M    I    +   +L+        L  G+Q+H+ ++  GLQ
Sbjct: 603 AGYAQINLE-QAVNLFRDMLVEGINSTEITFASLLDACHEQQKLNLGRQIHSLILKMGLQ 661

Query: 284 -SELRLSNSIIAMYSKCGDLDSSRSVFNQITE-KSLVSWTAIISGYVQNGCAREALNQFI 341
             +  L  S++ MY        +  +F++ +  KS V WTA+ISG  QN C+  AL  + 
Sbjct: 662 LDDEFLGVSLLGMYMNSLRTTDASVLFSEFSNPKSAVVWTAMISGLSQNDCSVVALQLYK 721

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +MR       D  T VS L A   +++++   + H + F  GF       + L+  Y+KC
Sbjct: 722 EMRSCNVLP-DQATFVSALRACAVVSSIKDGTETHSLIFHTGFDSDELTSSALVDMYAKC 780

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G+V  +  VF+EM   +DV+SWN++I G+  NG+ E AL ++ +M ++   PD  T+L +
Sbjct: 781 GDVKSSMQVFKEMSRKKDVISWNSMIVGFAKNGYAEDALRVFDEMKQSHVTPDDVTFLGV 840

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L AC H+G  ++G +IF+ M+    ++P  +H  C+VDLL R G L +A     KL    
Sbjct: 841 LTACSHSGRVSEGRLIFDMMVNLYGMQPRADHCACMVDLLGRWGSLKEAEEFINKLNFEP 900

Query: 522 GPNIWRALLSGCVLH---------------------------------VGRFQDAEALRS 548
              +W  +L  C +H                                  G + +   LR 
Sbjct: 901 DAKVWATMLGACRIHGDDIRGQQAAEKLIELEPQNSSPYVLLSNIYAASGNWDEVNTLRR 960

Query: 549 GSQKKGIIKIPGISFL 564
             ++KG+ K+PG S++
Sbjct: 961 EMREKGVKKLPGCSWI 976



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 147/522 (28%), Positives = 239/522 (45%), Gaps = 68/522 (13%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTM 74
           Y K   +  AE  F ++ +K++++W+ ++  +S  GF    +K F  +  SG+ PN FT 
Sbjct: 104 YAKCADVDYAERAFKQLEDKDILAWNSILSMHSKQGFPHLVVKYFGLLWNSGVWPNEFTF 163

Query: 75  VGVLVAAAGLQNLELARSIHGLMVKFGLES----------------------DLFEGLKN 112
             VL + A L+ ++  R +H  +VK G ES                       +F+G   
Sbjct: 164 AIVLSSCARLEMVKCGRQVHCNVVKMGFESISYCEGALIGMYAKCNFLTDARSIFDGAVE 223

Query: 113 PYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELI 172
              VS  +++ G+I   L ++AV +F      G  P+ V  +TVI   V LG        
Sbjct: 224 LDKVSWTSMIGGYIKVGLPEEAVKVFQEMEKVGQEPDQVAFVTVINAYVDLGR------- 276

Query: 173 HGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYA 232
                                       LD A  +F  M  ++V++W  M+       Y 
Sbjct: 277 ----------------------------LDNASDLFSRMPNRNVVAWNLMISGHAKGGYG 308

Query: 233 GDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSI 292
            +A++ F+ MRK+ I      L +++S  A L  L  G  +HA+ +  GL S + + +S+
Sbjct: 309 VEAIEFFQNMRKAGIKSTRSTLGSVLSAIASLAALDFGLLVHAEALKQGLHSNVYVGSSL 368

Query: 293 IAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVD 352
           ++MY+KCG +++++ VF+ + E+++V W A++ GYVQNG A E +  F  M+       D
Sbjct: 369 VSMYAKCGKMEAAKKVFDTLNEQNVVLWNAMLGGYVQNGYANEVMELFFNMKSCGF-YPD 427

Query: 353 SITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFE 412
             T  SIL+A   L  L++  QLH +  +  F     V N L+  Y+K G ++ A   FE
Sbjct: 428 DFTYSSILSACACLKYLDLGHQLHSVIIKNKFASNLFVGNALVDMYAKSGALEDARQQFE 487

Query: 413 EMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTN 472
            +   RD VSWN II GY        A  L+ +M   G +PD  +  SIL+AC       
Sbjct: 488 LIRN-RDNVSWNVIIVGYVQEEDEVEAFHLFRRMNLLGILPDEVSLASILSACASVRGLE 546

Query: 473 DGLVIFNQMIEENKVKPSQEHY----GCVVDLLARAGCLSDA 510
            G     + +    VK  QE        ++D+ A+ G +  A
Sbjct: 547 QG-----KQVHCLSVKTGQETKLYSGSSLIDMYAKCGAIDSA 583



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 149/528 (28%), Positives = 250/528 (47%), Gaps = 18/528 (3%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y    L+  Y K   + +A ++FD   E + VSW+ +I GY   G  E+++K F  M   
Sbjct: 196 YCEGALIGMYAKCNFLTDARSIFDGAVELDKVSWTSMIGGYIKVGLPEEAVKVFQEMEKV 255

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGF 125
           G  P+    V V+ A   L  L+ A             SDLF  + N  +V+ N +++G 
Sbjct: 256 GQEPDQVAFVTVINAYVDLGRLDNA-------------SDLFSRMPNRNVVAWNLMISGH 302

Query: 126 INNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDV 185
                  +A+  F   R +G+     T+ +V+    +L +     L+H   +K GL  +V
Sbjct: 303 AKGGYGVEAIEFFQNMRKAGIKSTRSTLGSVLSAIASLAALDFGLLVHAEALKQGLHSNV 362

Query: 186 SVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKS 245
            V +S++ MY+    ++AA ++F  +  ++V+ W  M+G +V   YA + +++F  M+  
Sbjct: 363 YVGSSLVSMYAKCGKMEAAKKVFDTLNEQNVVLWNAMLGGYVQNGYANEVMELFFNMKSC 422

Query: 246 RIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSS 305
               D     +++S  A L  L  G QLH+ ++     S L + N+++ MY+K G L+ +
Sbjct: 423 GFYPDDFTYSSILSACACLKYLDLGHQLHSVIIKNKFASNLFVGNALVDMYAKSGALEDA 482

Query: 306 RSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGE 365
           R  F  I  +  VSW  II GYVQ     EA + F +M        D ++L SIL+A   
Sbjct: 483 RQQFELIRNRDNVSWNVIIVGYVQEEDEVEAFHLFRRMNLLGILP-DEVSLASILSACAS 541

Query: 366 LAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNT 425
           +  LE   Q+H ++ + G        + LI  Y+KCG +D A+ +   M   R VVS N 
Sbjct: 542 VRGLEQGKQVHCLSVKTGQETKLYSGSSLIDMYAKCGAIDSAHKILACMP-ERSVVSMNA 600

Query: 426 IIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEEN 485
           +I GY    + E A+ L+  M   G      T+ S+L+AC      N G  I + +I + 
Sbjct: 601 LIAGYA-QINLEQAVNLFRDMLVEGINSTEITFASLLDACHEQQKLNLGRQI-HSLILKM 658

Query: 486 KVKPSQEHYGC-VVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSG 532
            ++   E  G  ++ +   +   +DAS L  +        +W A++SG
Sbjct: 659 GLQLDDEFLGVSLLGMYMNSLRTTDASVLFSEFSNPKSAVVWTAMISG 706



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 134/511 (26%), Positives = 224/511 (43%), Gaps = 70/511 (13%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEK--NVVSWSIVIHGYSIN-GFHEKSMKAF 59
           + P   + +L N  +  K  +  +LFDEIP++     + + +IH  S+  GF  K     
Sbjct: 39  LKPRIYTHILQNCLQKSKQVKTHSLFDEIPQRLSQFSTTNKIIHAQSLKLGFWSK----- 93

Query: 60  SHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCN 119
                 G+L N   +V +    A +   E A                F+ L++  +++ N
Sbjct: 94  ------GVLGN--VIVDLYAKCADVDYAERA----------------FKQLEDKDILAWN 129

Query: 120 AIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKL 179
           +I++           V  F     SG+ PN  T   V+  C  L        +H   +K+
Sbjct: 130 SILSMHSKQGFPHLVVKYFGLLWNSGVWPNEFTFAIVLSSCARLEMVKCGRQVHCNVVKM 189

Query: 180 GLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIF 239
           G         +++ MY+    L  A  IF      D +SWT M+G ++      +A+K+F
Sbjct: 190 GFESISYCEGALIGMYAKCNFLTDARSIFDGAVELDKVSWTSMIGGYIKVGLPEEAVKVF 249

Query: 240 REMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKC 299
           +EM K     D VA +                                   ++I  Y   
Sbjct: 250 QEMEKVGQEPDQVAFV-----------------------------------TVINAYVDL 274

Query: 300 GDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSI 359
           G LD++  +F+++  +++V+W  +ISG+ + G   EA+  F  MR+    S  S TL S+
Sbjct: 275 GRLDNASDLFSRMPNRNVVAWNLMISGHAKGGYGVEAIEFFQNMRKAGIKSTRS-TLGSV 333

Query: 360 LTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRD 419
           L+A   LAAL+  L +H  A + G      V + L+S Y+KCG ++ A  VF+ +   ++
Sbjct: 334 LSAIASLAALDFGLLVHAEALKQGLHSNVYVGSSLVSMYAKCGKMEAAKKVFDTLN-EQN 392

Query: 420 VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFN 479
           VV WN ++ GY  NG+    + L+  M   G  PD  TY SIL+AC      + G  + +
Sbjct: 393 VVLWNAMLGGYVQNGYANEVMELFFNMKSCGFYPDDFTYSSILSACACLKYLDLGHQLHS 452

Query: 480 QMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
            +I +NK   +      +VD+ A++G L DA
Sbjct: 453 VII-KNKFASNLFVGNALVDMYAKSGALEDA 482



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 93/366 (25%), Positives = 169/366 (46%), Gaps = 41/366 (11%)

Query: 170 ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDF 229
           ++IH  ++KLG      + N ++D+Y+   D+D A + F+++E KD+++W  ++ +    
Sbjct: 79  KIIHAQSLKLGFWSKGVLGNVIVDLYAKCADVDYAERAFKQLEDKDILAWNSILSMHSKQ 138

Query: 230 EYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLS 289
            +    +K F  +  S +  +      ++S  A L  +K G+Q+H  VV  G +S     
Sbjct: 139 GFPHLVVKYFGLLWNSGVWPNEFTFAIVLSSCARLEMVKCGRQVHCNVVKMGFESISYCE 198

Query: 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD 349
            ++I MY+KC  L  +RS+F+   E   VSWT++I GY++ G   EA+  F +M +   +
Sbjct: 199 GALIGMYAKCNFLTDARSIFDGAVELDKVSWTSMIGGYIKVGLPEEAVKVFQEMEKVGQE 258

Query: 350 SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYI 409
             D +  V+++ A                                   Y   G +D A  
Sbjct: 259 P-DQVAFVTVINA-----------------------------------YVDLGRLDNASD 282

Query: 410 VFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAG 469
           +F  M   R+VV+WN +I G+   G+G  A+  +  M + G     ST  S+L+A     
Sbjct: 283 LFSRMPN-RNVVAWNLMISGHAKGGYGVEAIEFFQNMRKAGIKSTRSTLGSVLSAIASLA 341

Query: 470 LTNDGLVIFNQMIEENKVKPSQEHYG-CVVDLLARAGCLSDASGLAGKLLEGMGPNIWRA 528
             + GL++  + +++     S  + G  +V + A+ G +  A  +   L E     +W A
Sbjct: 342 ALDFGLLVHAEALKQG--LHSNVYVGSSLVSMYAKCGKMEAAKKVFDTLNE-QNVVLWNA 398

Query: 529 LLSGCV 534
           +L G V
Sbjct: 399 MLGGYV 404



 Score = 46.6 bits (109), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 39/184 (21%), Positives = 85/184 (46%), Gaps = 12/184 (6%)

Query: 375 LHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNG 434
           +H  + + GF     + N ++  Y+KC +VD A   F+++   +D+++WN+I+  +   G
Sbjct: 81  IHAQSLKLGFWSKGVLGNVIVDLYAKCADVDYAERAFKQLED-KDILAWNSILSMHSKQG 139

Query: 435 HGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY 494
                +  +  +  +G  P+  T+  +L++C    +   G     + +  N VK   E  
Sbjct: 140 FPHLVVKYFGLLWNSGVWPNEFTFAIVLSSCARLEMVKCG-----RQVHCNVVKMGFESI 194

Query: 495 ----GCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGS 550
               G ++ + A+   L+DA  +    +E +    W +++ G  + VG  ++A  +    
Sbjct: 195 SYCEGALIGMYAKCNFLTDARSIFDGAVE-LDKVSWTSMIGG-YIKVGLPEEAVKVFQEM 252

Query: 551 QKKG 554
           +K G
Sbjct: 253 EKVG 256


>gi|218546775|sp|Q9SII7.2|PP159_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g17210
          Length = 736

 Score =  267 bits (683), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 167/545 (30%), Positives = 288/545 (52%), Gaps = 34/545 (6%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTM 74
           Y K G +      FD +  ++ VSW++++ G    GF E+ +  FS + + G  PN+ T+
Sbjct: 92  YMKCGDLCSGLREFDCMNSRDSVSWNVIVFGLLDYGFEEEGLWWFSKLRVWGFEPNTSTL 151

Query: 75  VGVLVAAAGLQNLELARSIHGLMVKFGL---------------ESD------LFEGLKNP 113
           V V+ A   L        IHG +++ G                +SD      LF+ +   
Sbjct: 152 VLVIHACRSLWFD--GEKIHGYVIRSGFCGISSVQNSILCMYADSDSLSARKLFDEMSER 209

Query: 114 YLVSCNAIVAGFINNKLFQQAVLLFN-FFRGSGLVPNAVTMLTVIRGCVALGSRALCELI 172
            ++S + ++  ++ +K     + LF      +   P+ VT+ +V++ C  +    +   +
Sbjct: 210 DVISWSVVIRSYVQSKEPVVGLKLFKEMVHEAKTEPDCVTVTSVLKACTVMEDIDVGRSV 269

Query: 173 HGLTIKLGLIL-DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           HG +I+ G  L DV V NS++DMYS   D+D+A ++F E  C++++SW  ++  FV  + 
Sbjct: 270 HGFSIRRGFDLADVFVCNSLIDMYSKGFDVDSAFRVFDETTCRNIVSWNSILAGFVHNQR 329

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
             +AL++F  M +  +  D V +++L+ V          K +H  ++  G +S     +S
Sbjct: 330 YDEALEMFHLMVQEAVEVDEVTVVSLLRVCKFFEQPLPCKSIHGVIIRRGYESNEVALSS 389

Query: 292 IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
           +I  Y+ C  +D + +V + +T K +VS + +ISG    G + EA++ F  MR    D+ 
Sbjct: 390 LIDAYTSCSLVDDAGTVLDSMTYKDVVSCSTMISGLAHAGRSDEAISIFCHMR----DTP 445

Query: 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFP-RYRSVQNCLISSYSKCGNVDLAYIV 410
           ++IT++S+L A    A L      HGIA          SV   ++ +Y+KCG +++A   
Sbjct: 446 NAITVISLLNACSVSADLRTSKWAHGIAIRRSLAINDISVGTSIVDAYAKCGAIEMARRT 505

Query: 411 FEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGL 470
           F+++   ++++SW  II  Y +NG  + ALAL+ +M + G  P++ TYL+ L+AC H GL
Sbjct: 506 FDQIT-EKNIISWTVIISAYAINGLPDKALALFDEMKQKGYTPNAVTYLAALSACNHGGL 564

Query: 471 TNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM--GPNIWRA 528
              GL+IF  M+EE+  KPS +HY C+VD+L+RAG +  A  L   L E +  G + W A
Sbjct: 565 VKKGLMIFKSMVEEDH-KPSLQHYSCIVDMLSRAGEIDTAVELIKNLPEDVKAGASAWGA 623

Query: 529 LLSGC 533
           +LSGC
Sbjct: 624 ILSGC 628



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 154/311 (49%), Gaps = 5/311 (1%)

Query: 156 VIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKD 215
           V + C  L        I    +K G    VSV NS+ D Y    DL + ++ F  M  +D
Sbjct: 53  VFKACAKLSWLFQGRCIQASLLKRGFESFVSVGNSIADFYMKCGDLCSGLREFDCMNSRD 112

Query: 216 VISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
            +SW  ++   +D+ +  + L  F ++R      +T  L  ++ ++A       G+++H 
Sbjct: 113 SVSWNVIVFGLLDYGFEEEGLWWFSKLRVWGFEPNTSTL--VLVIHACRSLWFDGEKIHG 170

Query: 276 QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
            V+  G      + NSI+ MY+    L S+R +F++++E+ ++SW+ +I  YVQ+     
Sbjct: 171 YVIRSGFCGISSVQNSILCMYADSDSL-SARKLFDEMSERDVISWSVVIRSYVQSKEPVV 229

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS-VQNCL 394
            L  F +M  E     D +T+ S+L A   +  +++   +HG +   GF      V N L
Sbjct: 230 GLKLFKEMVHEAKTEPDCVTVTSVLKACTVMEDIDVGRSVHGFSIRRGFDLADVFVCNSL 289

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           I  YSK  +VD A+ VF+E    R++VSWN+I+ G+  N   + AL ++H M +     D
Sbjct: 290 IDMYSKGFDVDSAFRVFDETT-CRNIVSWNSILAGFVHNQRYDEALEMFHLMVQEAVEVD 348

Query: 455 SSTYLSILNAC 465
             T +S+L  C
Sbjct: 349 EVTVVSLLRVC 359



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 80/349 (22%), Positives = 167/349 (47%), Gaps = 29/349 (8%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L+  Y K   +  A  +FDE   +N+VSW+ ++ G+  N  ++++++ F  M+
Sbjct: 282 DVFVCNSLIDMYSKGFDVDSAFRVFDETTCRNIVSWNSILAGFVHNQRYDEALEMFHLMV 341

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
              +  +  T+V +L      +     +SIHG++++ G ES+                  
Sbjct: 342 QEAVEVDEVTVVSLLRVCKFFEQPLPCKSIHGVIIRRGYESNEVALSSLIDAYTSCSLVD 401

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               + + +    +VSC+ +++G  +     +A+ +F   R +   PNA+T+++++  C 
Sbjct: 402 DAGTVLDSMTYKDVVSCSTMISGLAHAGRSDEAISIFCHMRDT---PNAITVISLLNACS 458

Query: 162 ALGSRALCELIHGLTIKLGL-ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
                   +  HG+ I+  L I D+SV  S++D Y+    ++ A + F ++  K++ISWT
Sbjct: 459 VSADLRTSKWAHGIAIRRSLAINDISVGTSIVDAYAKCGAIEMARRTFDQITEKNIISWT 518

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++  +        AL +F EM++     + V  L  +S     G +K+G  +   +V  
Sbjct: 519 VIISAYAINGLPDKALALFDEMKQKGYTPNAVTYLAALSACNHGGLVKKGLMIFKSMVEE 578

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK---SLVSWTAIISG 326
             +  L+  + I+ M S+ G++D++  +   + E       +W AI+SG
Sbjct: 579 DHKPSLQHYSCIVDMLSRAGEIDTAVELIKNLPEDVKAGASAWGAILSG 627



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 1/136 (0%)

Query: 330 NGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS 389
           +G  RE ++ + ++++      D      +  A  +L+ L     +     + GF  + S
Sbjct: 24  SGKWREVVSGYSEIQRAGVQFNDPFVFPIVFKACAKLSWLFQGRCIQASLLKRGFESFVS 83

Query: 390 VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
           V N +   Y KCG++      F+ M   RD VSWN I++G    G  E  L  + K+   
Sbjct: 84  VGNSIADFYMKCGDLCSGLREFDCMN-SRDSVSWNVIVFGLLDYGFEEEGLWWFSKLRVW 142

Query: 450 GEVPDSSTYLSILNAC 465
           G  P++ST + +++AC
Sbjct: 143 GFEPNTSTLVLVIHAC 158


>gi|147780613|emb|CAN69119.1| hypothetical protein VITISV_031846 [Vitis vinifera]
          Length = 654

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 186/590 (31%), Positives = 293/590 (49%), Gaps = 54/590 (9%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKS--MKAFSHMM 63
           Y ++ L++ Y K  +++EA+ +F+ I  K+VVSW+ +I+GYS +G    S  M+ F  M 
Sbjct: 41  YIANSLVNLYAKCQRLREAKFVFERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMR 100

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPYL------ 115
                PN+ T  GV  AA+ L +    R  H + +K     D+F G  L N Y       
Sbjct: 101 AENTAPNAHTFAGVFTAASTLVDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTP 160

Query: 116 --------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                         VS   +++G+ + KL  +A+ LF   R      N     +V     
Sbjct: 161 EARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMRREEEGENEFVFTSV----- 215

Query: 162 ALGSRALCEL------IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKD 215
            L +  L EL      IH + +K GL+  VSV N+++ MY+    LD A+Q F     K+
Sbjct: 216 -LSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKN 274

Query: 216 VISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
            I+W+ M+        +  ALK+F  M  S I       + +I+  + LG    GKQ+H 
Sbjct: 275 SITWSAMITGXAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEGKQVHD 334

Query: 276 QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
            ++  G +S++ +  +++ MY+KC  +  +R  F+ + E  +V WT++I GYVQNG   +
Sbjct: 335 YLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENED 394

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLI 395
           AL+ + +M  E     + +T+ S+L A   LAALE   Q+H    + GF     + + L 
Sbjct: 395 ALSLYGRMEMEGILP-NELTMASVLKACSSLAALEQGKQIHARTVKYGFGLEVPIGSALS 453

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
           + Y+KCG +    +VF  M   RDV+SWN +I G   NG G+ AL L+ +M   G  PD 
Sbjct: 454 TMYAKCGCLKDGTLVFRRMP-ARDVISWNAMISGLSQNGCGKEALELFEEMQLEGTKPDY 512

Query: 456 STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAG 515
            T+++IL+AC H GL   G   F  M +E  + P  EHY C+VD+L+RAG L +A     
Sbjct: 513 VTFVNILSACSHMGLVERGWGYFRMMFDEFGMDPRVEHYACMVDILSRAGKLKEAIEFTE 572

Query: 516 KLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFLN 565
                          S  + H G ++D E +R   + +G+ K PG S++ 
Sbjct: 573 ---------------SATIDH-GMWEDVERVRRMMKLRGVSKEPGCSWIE 606



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 125/436 (28%), Positives = 211/436 (48%), Gaps = 27/436 (6%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C D +  S L++ Y K+G   EA  +FD +PE+N VSW+ +I GY+      +++  F  
Sbjct: 140 CRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRL 199

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES----------------- 104
           M       N F    VL A    + +   + IH + VK GL S                 
Sbjct: 200 MRREEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGS 259

Query: 105 -----DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                  FE   +   ++ +A++ G   +    +A+ LF+    SG+ P+  T + VI  
Sbjct: 260 LDDALQTFETSSDKNSITWSAMITGXAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINA 319

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C  LG+    + +H   +KLG    + V  +++DMY+    +  A + F  ++  D++ W
Sbjct: 320 CSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLW 379

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           T M+G +V      DAL ++  M    I+ + + + +++   + L  L++GKQ+HA+ V 
Sbjct: 380 TSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIHARTVK 439

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G   E+ + +++  MY+KCG L     VF ++  + ++SW A+ISG  QNGC +EAL  
Sbjct: 440 YGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQNGCGKEALEL 499

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAF-EAGF-PRYRSVQNCLISS 397
           F +M+ E T   D +T V+IL+A   +  +E       + F E G  PR      C++  
Sbjct: 500 FEEMQLEGTKP-DYVTFVNILSACSHMGLVERGWGYFRMMFDEFGMDPRVEHYA-CMVDI 557

Query: 398 YSKCGNVDLAYIVFEE 413
            S+ G +  A I F E
Sbjct: 558 LSRAGKLKEA-IEFTE 572



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 106/406 (26%), Positives = 196/406 (48%), Gaps = 25/406 (6%)

Query: 167 ALCELIHGLTIKLGLILD----------VSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
           AL +  H  +++ G  L           V + NS++++Y+    L  A  +F  ++ KDV
Sbjct: 12  ALLQYTHNRSLQKGKALHAQIIKSSSSCVYIANSLVNLYAKCQRLREAKFVFERIQNKDV 71

Query: 217 ISWTRMMGLFVDFEYAGDA--LKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
           +SW  ++  +     +G +  +++F+ MR      +      + +  + L D   G+  H
Sbjct: 72  VSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLVDAAGGRLAH 131

Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
           A  +      ++ + +S++ MY K G    +R VF+ + E++ VSW  +ISGY     A 
Sbjct: 132 AVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAA 191

Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
           EAL  F  MR+E+ +  +     S+L+A      +    Q+H IA + G     SV N L
Sbjct: 192 EALGLFRLMRREE-EGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNAL 250

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           ++ Y+KCG++D A   FE     ++ ++W+ +I G   +G  + AL L+  M  +G  P 
Sbjct: 251 VTMYAKCGSLDDALQTFETSSD-KNSITWSAMITGXAQSGDSDKALKLFSSMHLSGIRPS 309

Query: 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY--GCVVDLLARAGCLSDASG 512
             T++ ++NAC   G   +G  + + ++   K+    + Y    +VD+ A+   + DA  
Sbjct: 310 EFTFVGVINACSDLGAAWEGKQVHDYLL---KLGFESQIYVMTALVDMYAKCSSIVDARK 366

Query: 513 LAGKLLEGMGPNI--WRALLSGCVLHVGRFQDAEALRSGSQKKGII 556
               L E   P+I  W +++ G V + G  +DA +L    + +GI+
Sbjct: 367 GFDYLQE---PDIVLWTSMIGGYVQN-GENEDALSLYGRMEMEGIL 408


>gi|15227389|ref|NP_179312.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|4584344|gb|AAD25139.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330251504|gb|AEC06598.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 167/545 (30%), Positives = 288/545 (52%), Gaps = 34/545 (6%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTM 74
           Y K G +      FD +  ++ VSW++++ G    GF E+ +  FS + + G  PN+ T+
Sbjct: 71  YMKCGDLCSGLREFDCMNSRDSVSWNVIVFGLLDYGFEEEGLWWFSKLRVWGFEPNTSTL 130

Query: 75  VGVLVAAAGLQNLELARSIHGLMVKFGL---------------ESD------LFEGLKNP 113
           V V+ A   L        IHG +++ G                +SD      LF+ +   
Sbjct: 131 VLVIHACRSLWFD--GEKIHGYVIRSGFCGISSVQNSILCMYADSDSLSARKLFDEMSER 188

Query: 114 YLVSCNAIVAGFINNKLFQQAVLLFN-FFRGSGLVPNAVTMLTVIRGCVALGSRALCELI 172
            ++S + ++  ++ +K     + LF      +   P+ VT+ +V++ C  +    +   +
Sbjct: 189 DVISWSVVIRSYVQSKEPVVGLKLFKEMVHEAKTEPDCVTVTSVLKACTVMEDIDVGRSV 248

Query: 173 HGLTIKLGLIL-DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           HG +I+ G  L DV V NS++DMYS   D+D+A ++F E  C++++SW  ++  FV  + 
Sbjct: 249 HGFSIRRGFDLADVFVCNSLIDMYSKGFDVDSAFRVFDETTCRNIVSWNSILAGFVHNQR 308

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
             +AL++F  M +  +  D V +++L+ V          K +H  ++  G +S     +S
Sbjct: 309 YDEALEMFHLMVQEAVEVDEVTVVSLLRVCKFFEQPLPCKSIHGVIIRRGYESNEVALSS 368

Query: 292 IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
           +I  Y+ C  +D + +V + +T K +VS + +ISG    G + EA++ F  MR    D+ 
Sbjct: 369 LIDAYTSCSLVDDAGTVLDSMTYKDVVSCSTMISGLAHAGRSDEAISIFCHMR----DTP 424

Query: 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFP-RYRSVQNCLISSYSKCGNVDLAYIV 410
           ++IT++S+L A    A L      HGIA          SV   ++ +Y+KCG +++A   
Sbjct: 425 NAITVISLLNACSVSADLRTSKWAHGIAIRRSLAINDISVGTSIVDAYAKCGAIEMARRT 484

Query: 411 FEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGL 470
           F+++   ++++SW  II  Y +NG  + ALAL+ +M + G  P++ TYL+ L+AC H GL
Sbjct: 485 FDQIT-EKNIISWTVIISAYAINGLPDKALALFDEMKQKGYTPNAVTYLAALSACNHGGL 543

Query: 471 TNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM--GPNIWRA 528
              GL+IF  M+EE+  KPS +HY C+VD+L+RAG +  A  L   L E +  G + W A
Sbjct: 544 VKKGLMIFKSMVEEDH-KPSLQHYSCIVDMLSRAGEIDTAVELIKNLPEDVKAGASAWGA 602

Query: 529 LLSGC 533
           +LSGC
Sbjct: 603 ILSGC 607



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 80/349 (22%), Positives = 167/349 (47%), Gaps = 29/349 (8%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L+  Y K   +  A  +FDE   +N+VSW+ ++ G+  N  ++++++ F  M+
Sbjct: 261 DVFVCNSLIDMYSKGFDVDSAFRVFDETTCRNIVSWNSILAGFVHNQRYDEALEMFHLMV 320

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
              +  +  T+V +L      +     +SIHG++++ G ES+                  
Sbjct: 321 QEAVEVDEVTVVSLLRVCKFFEQPLPCKSIHGVIIRRGYESNEVALSSLIDAYTSCSLVD 380

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               + + +    +VSC+ +++G  +     +A+ +F   R +   PNA+T+++++  C 
Sbjct: 381 DAGTVLDSMTYKDVVSCSTMISGLAHAGRSDEAISIFCHMRDT---PNAITVISLLNACS 437

Query: 162 ALGSRALCELIHGLTIKLGL-ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
                   +  HG+ I+  L I D+SV  S++D Y+    ++ A + F ++  K++ISWT
Sbjct: 438 VSADLRTSKWAHGIAIRRSLAINDISVGTSIVDAYAKCGAIEMARRTFDQITEKNIISWT 497

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++  +        AL +F EM++     + V  L  +S     G +K+G  +   +V  
Sbjct: 498 VIISAYAINGLPDKALALFDEMKQKGYTPNAVTYLAALSACNHGGLVKKGLMIFKSMVEE 557

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK---SLVSWTAIISG 326
             +  L+  + I+ M S+ G++D++  +   + E       +W AI+SG
Sbjct: 558 DHKPSLQHYSCIVDMLSRAGEIDTAVELIKNLPEDVKAGASAWGAILSG 606


>gi|356524187|ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 177/573 (30%), Positives = 289/573 (50%), Gaps = 33/573 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVS-WSIVIHGYSINGFHEKSMKAFSHM 62
           D +    L++ Y        A+ +FD +     +S W+ ++ GY+ N  + ++++ F  +
Sbjct: 37  DIFLCKNLINLYLSCHLYDHAKCVFDNMENPCEISLWNGLMAGYTKNYMYVEALELFEKL 96

Query: 63  M-LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------- 105
           +    L P+S+T   VL A  GL    L + IH  +VK GL  D                
Sbjct: 97  LHYPYLKPDSYTYPSVLKACGGLYKYVLGKMIHTCLVKTGLMMDIVVGSSLVGMYAKCNA 156

Query: 106 ------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                 LF  +    +   N +++ +  +  F++A+  F   R  G  PN+VT+ T I  
Sbjct: 157 FEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKEALEYFGLMRRFGFEPNSVTITTAISS 216

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C  L        IH   I  G +LD  ++++++DMY     L+ AI++F +M  K V++W
Sbjct: 217 CARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEVFEQMPKKTVVAW 276

Query: 220 TRMMGLFVDFEYAGDAL---KIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQ 276
             M+     +   GD++   ++F+ M    +      L +LI V +    L  GK +H  
Sbjct: 277 NSMIS---GYGLKGDSISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGY 333

Query: 277 VVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
            +   +QS++ +++S++ +Y KCG ++ + ++F  I +  +VSW  +ISGYV  G   EA
Sbjct: 334 TIRNRIQSDVFINSSLMDLYFKCGKVELAENIFKLIPKSKVVSWNVMISGYVAEGKLFEA 393

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
           L  F +MR+   +  D+IT  S+LTA  +LAALE   ++H +  E        V   L+ 
Sbjct: 394 LGLFSEMRKSYVEP-DAITFTSVLTACSQLAALEKGEEIHNLIIEKKLDNNEVVMGALLD 452

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
            Y+KCG VD A+ VF+ +   RD+VSW ++I  YG +G    AL L+ +M ++   PD  
Sbjct: 453 MYAKCGAVDEAFSVFKCLP-KRDLVSWTSMITAYGSHGQAYVALELFAEMLQSNMKPDRV 511

Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK 516
           T+L+IL+ACGHAGL ++G   FNQM+    + P  EHY C++DLL RAG L +A  +  +
Sbjct: 512 TFLAILSACGHAGLVDEGCYYFNQMVNVYGIIPRVEHYSCLIDLLGRAGRLHEAYEILQQ 571

Query: 517 LLEGMGP-NIWRALLSGCVLHVGRFQDAEALRS 548
             E      +   L S C LH      AE  R+
Sbjct: 572 NPEIRDDVELLSTLFSACRLHRNIDLGAEIART 604



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 130/461 (28%), Positives = 232/461 (50%), Gaps = 27/461 (5%)

Query: 74  MVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF----------------------EGLK 111
           ++ +L A    ++L+  + IH  +V  GL++D+F                      + ++
Sbjct: 6   LLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCVFDNME 65

Query: 112 NPYLVSC-NAIVAGFINNKLFQQAVLLF-NFFRGSGLVPNAVTMLTVIRGCVALGSRALC 169
           NP  +S  N ++AG+  N ++ +A+ LF        L P++ T  +V++ C  L    L 
Sbjct: 66  NPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKACGGLYKYVLG 125

Query: 170 ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDF 229
           ++IH   +K GL++D+ V +S++ MY+     + AI +F EM  KDV  W  ++  +   
Sbjct: 126 KMIHTCLVKTGLMMDIVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQS 185

Query: 230 EYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLS 289
               +AL+ F  MR+     ++V +   IS  A L DL RG ++H +++  G   +  +S
Sbjct: 186 GNFKEALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFIS 245

Query: 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD 349
           ++++ MY KCG L+ +  VF Q+ +K++V+W ++ISGY   G +   +  F +M  E   
Sbjct: 246 SALVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLFKRMYNEGVK 305

Query: 350 SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYI 409
              + TL S++      A L     +HG            + + L+  Y KCG V+LA  
Sbjct: 306 PTLT-TLSSLIMVCSRSARLLEGKFVHGYTIRNRIQSDVFINSSLMDLYFKCGKVELAEN 364

Query: 410 VFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAG 469
           +F+ +   + VVSWN +I GY   G    AL L+ +M ++   PD+ T+ S+L AC    
Sbjct: 365 IFKLIPKSK-VVSWNVMISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTSVLTACSQLA 423

Query: 470 LTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
               G  I N +IE+ K+  ++   G ++D+ A+ G + +A
Sbjct: 424 ALEKGEEIHNLIIEK-KLDNNEVVMGALLDMYAKCGAVDEA 463



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 132/500 (26%), Positives = 238/500 (47%), Gaps = 28/500 (5%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           S L+  Y K    ++A  LF+E+PEK+V  W+ VI  Y  +G  +++++ F  M   G  
Sbjct: 145 SSLVGMYAKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKEALEYFGLMRRFGFE 204

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------L 106
           PNS T+   + + A L +L     IH  ++  G   D                      +
Sbjct: 205 PNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEV 264

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           FE +    +V+ N++++G+         + LF      G+ P   T+ ++I  C      
Sbjct: 265 FEQMPKKTVVAWNSMISGYGLKGDSISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARL 324

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
              + +HG TI+  +  DV +N+S++D+Y     ++ A  IF+ +    V+SW  M+  +
Sbjct: 325 LEGKFVHGYTIRNRIQSDVFINSSLMDLYFKCGKVELAENIFKLIPKSKVVSWNVMISGY 384

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
           V      +AL +F EMRKS +  D +   ++++  + L  L++G+++H  ++   L +  
Sbjct: 385 VAEGKLFEALGLFSEMRKSYVEPDAITFTSVLTACSQLAALEKGEEIHNLIIEKKLDNNE 444

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            +  +++ MY+KCG +D + SVF  + ++ LVSWT++I+ Y  +G A  AL  F +M Q 
Sbjct: 445 VVMGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHGQAYVALELFAEMLQS 504

Query: 347 KTDSVDSITLVSILTASGELAAL-EICLQLHGIAFEAG-FPRYRSVQNCLISSYSKCGNV 404
                D +T ++IL+A G    + E C   + +    G  PR     +CLI    + G +
Sbjct: 505 NMKP-DRVTFLAILSACGHAGLVDEGCYYFNQMVNVYGIIPRVEHY-SCLIDLLGRAGRL 562

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILN 463
             AY + ++   +RD V   + ++      H    L      T   + P DSSTY+ + N
Sbjct: 563 HEAYEILQQNPEIRDDVELLSTLFS-ACRLHRNIDLGAEIARTLIDKDPDDSSTYILLSN 621

Query: 464 ACGHAGLTNDGLVIFNQMIE 483
               A   ++  V+ ++M E
Sbjct: 622 MYASAHKWDEVRVVRSKMKE 641



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 162/335 (48%), Gaps = 23/335 (6%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D + SS L+  Y K G ++ A  +F+++P+K VV+W+ +I GY + G     ++ F  M
Sbjct: 240 LDSFISSALVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLFKRM 299

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY------ 114
              G+ P   T+  +++  +    L   + +HG  ++  ++SD+F    L + Y      
Sbjct: 300 YNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQSDVFINSSLMDLYFKCGKV 359

Query: 115 --------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                         +VS N +++G++      +A+ LF+  R S + P+A+T  +V+  C
Sbjct: 360 ELAENIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTSVLTAC 419

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             L +    E IH L I+  L  +  V  ++LDMY+    +D A  +F+ +  +D++SWT
Sbjct: 420 SQLAALEKGEEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWT 479

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV-L 279
            M+  +     A  AL++F EM +S +  D V  L ++S     G +  G     Q+V +
Sbjct: 480 SMITAYGSHGQAYVALELFAEMLQSNMKPDRVTFLAILSACGHAGLVDEGCYYFNQMVNV 539

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE 314
            G+   +   + +I +  + G L  +  +  Q  E
Sbjct: 540 YGIIPRVEHYSCLIDLLGRAGRLHEAYEILQQNPE 574



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 135/287 (47%), Gaps = 10/287 (3%)

Query: 250 DTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVF 309
           DT  LL L+        LK+GK +H +VV  GLQ+++ L  ++I +Y  C   D ++ VF
Sbjct: 2   DTRKLLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCVF 61

Query: 310 NQITEKSLVS-WTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAA 368
           + +     +S W  +++GY +N    EAL  F K+        DS T  S+L A G L  
Sbjct: 62  DNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKACGGLYK 121

Query: 369 LEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIY 428
             +   +H    + G      V + L+  Y+KC   + A  +F EM   +DV  WNT+I 
Sbjct: 122 YVLGKMIHTCLVKTGLMMDIVVGSSLVGMYAKCNAFEKAIWLFNEMP-EKDVACWNTVIS 180

Query: 429 GYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVK 488
            Y  +G+ + AL  +  M   G  P+S T  + +++C      N G+ I  ++I    + 
Sbjct: 181 CYYQSGNFKEALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLL 240

Query: 489 PSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI---WRALLSG 532
            S      +VD+  + G L     +A ++ E M       W +++SG
Sbjct: 241 DSFIS-SALVDMYGKCGHLE----MAIEVFEQMPKKTVVAWNSMISG 282


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 166/550 (30%), Positives = 285/550 (51%), Gaps = 24/550 (4%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           +KL+S + K G + EA  +F  I +K    +  ++ GY+ N   + ++  F  M   G+ 
Sbjct: 113 TKLVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGVR 172

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY------------ 114
           P  +    +L       +L   + IH  ++  G  S++F   G+ N Y            
Sbjct: 173 PVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKM 232

Query: 115 --------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
                   LV  N I++G+  N   + A+ L    +  G  P+++T+++++     +GS 
Sbjct: 233 FDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSL 292

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
            +   IHG +++ G    V+V+ +++DMYS    +  A  IF  M  K V+SW  M+  +
Sbjct: 293 RIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGY 352

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
           V     G A++IF++M   ++    V ++  +   A LGD+++G+ +H  +    L S++
Sbjct: 353 VQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDV 412

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            + NS+I+MYSKC  +D +  +F  +  K+LVSW A+I GY QNG   EA++ F KM+ +
Sbjct: 413 SVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQ 472

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
                DS T+VS++ A  EL+ L     +HG+       +   V   L+  Y+KCG V  
Sbjct: 473 NIKP-DSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHT 531

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           A  +F+ M   R V +WN +I GYG +G G+ AL L+ KM +    P+  T+L +L+AC 
Sbjct: 532 ARKLFDMMD-ERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACS 590

Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIW 526
           H+GL  +G   F  M ++  ++P+ +HYG +VDLL RA  L++A     K+      +++
Sbjct: 591 HSGLVEEGFQYFGSMKKDYGLEPAMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAISVF 650

Query: 527 RALLSGCVLH 536
            A+L  C +H
Sbjct: 651 GAMLGACRIH 660



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 139/287 (48%), Gaps = 22/287 (7%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ L+  Y K G +  A  +FD +  K VVSW+ +I GY  NG    +M+ F  MM   +
Sbjct: 314 STALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQV 373

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
              + T++G L A A L ++E  R +H L+ +  L SD                      
Sbjct: 374 EMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAE 433

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +FE L++  LVS NA++ G+  N    +A+  F   +   + P++ TM++VI     L  
Sbjct: 434 IFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSV 493

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
               + IHGL I+  L  +V V  +++DMY+    +  A ++F  M+ + V +W  M+  
Sbjct: 494 LPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDG 553

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQ 272
           +        AL++F +M+K  I  + V  L ++S  +  G ++ G Q
Sbjct: 554 YGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQ 600



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/202 (33%), Positives = 101/202 (50%), Gaps = 5/202 (2%)

Query: 271 KQLHAQVVL---GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGY 327
           K+LH  + L    GL SE      +++++ K G L  +  VF  I +K    +  ++ GY
Sbjct: 91  KELHQFIPLIIKNGLYSEHLFQTKLVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLKGY 150

Query: 328 VQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRY 387
            +N    +A++ F +MR +    V       +L   G+ A L    ++H      GF   
Sbjct: 151 ARNSSLDDAVSFFCRMRYDGVRPV-VYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFASN 209

Query: 388 RSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMT 447
                 +++ Y+KC  V+ AY +F+ M   RD+V WNTII GY  NG G+TAL L  +M 
Sbjct: 210 VFAMTGVVNMYAKCRLVEEAYKMFDRMP-ERDLVCWNTIISGYAQNGFGKTALELVLRMQ 268

Query: 448 ETGEVPDSSTYLSILNACGHAG 469
           E G+ PDS T +SIL A    G
Sbjct: 269 EEGKRPDSITIVSILPAVADVG 290



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 3/105 (2%)

Query: 2   CIDP--YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAF 59
           C+D   + ++ L+  Y K G +  A  LFD + E++V +W+ +I GY  +G  + +++ F
Sbjct: 508 CLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGYGTHGLGKAALELF 567

Query: 60  SHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK-FGLE 103
             M    + PN  T + VL A +    +E      G M K +GLE
Sbjct: 568 EKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFGSMKKDYGLE 612


>gi|242033481|ref|XP_002464135.1| hypothetical protein SORBIDRAFT_01g012973 [Sorghum bicolor]
 gi|241917989|gb|EER91133.1| hypothetical protein SORBIDRAFT_01g012973 [Sorghum bicolor]
          Length = 576

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 167/526 (31%), Positives = 276/526 (52%), Gaps = 29/526 (5%)

Query: 12  LSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNS 71
           L  +   G++  A  +FD IP  +  +++ +I  YS  G    ++  +  M+   + PN 
Sbjct: 40  LEQHIARGQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNK 99

Query: 72  FTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPYL-------------- 115
           +T   VL A + L +L   R+IH      GL +DLF    L + Y+              
Sbjct: 100 YTFPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAK 159

Query: 116 ------VSCNAIVAGFINNKLFQQAVL-LFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
                 V+ NA++AG+ N+ ++  A+  L +     GL PNA T+++++      G+   
Sbjct: 160 MPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQ 219

Query: 169 CELIHGLTIKLGLILD---VSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
              +H   ++  L  +   V +  ++LDMY+    L  A ++F  M  ++ ++W+ ++G 
Sbjct: 220 GTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGG 279

Query: 226 FVDFEYAGDALKIFREMR-KSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
           FV  +   +A  +F++M  +        ++ + + V A L DL+ G QLHA +   G+ +
Sbjct: 280 FVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIHA 339

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           +L   NS+++MY+K G ++ +  +F++I  K  +S+ A++SGYVQNG A EA   F KM 
Sbjct: 340 DLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKM- 398

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
           Q      D  T+VS++ A   LAAL+     HG     G     S+ N LI  Y+KCG +
Sbjct: 399 QACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSICNSLIDMYAKCGRI 458

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           DL+  VF++M   RD+VSWNT+I GYG++G G+ A  L+  M   G  PD  T++ ++ A
Sbjct: 459 DLSRQVFDKMP-ARDIVSWNTMIAGYGIHGLGKEATTLFLSMKNQGFEPDDVTFICLIAA 517

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
           C H+GL  +G   F+ M  +  + P  EHY C+VDLLAR G L +A
Sbjct: 518 CSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGFLDEA 563



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 116/450 (25%), Positives = 216/450 (48%), Gaps = 39/450 (8%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + S+ L+  Y +  +   A N+F ++P ++VV+W+ ++ GY+ +G +  ++     M 
Sbjct: 133 DLFVSTALIDLYIRCARFGPAANVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQ 192

Query: 64  -LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
              GL PN+ T+V +L   A    L    S+H   ++  L+ +                 
Sbjct: 193 DRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKC 252

Query: 106 --------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGL-VPNAVTMLTV 156
                   +F G+     V+ +A++ GF+      +A  LF      G+   +A ++ + 
Sbjct: 253 KHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASA 312

Query: 157 IRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
           +R C +L    +   +H L  K G+  D++  NS+L MY+    ++ A  +F E+  KD 
Sbjct: 313 LRVCASLADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDT 372

Query: 217 ISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQ 276
           IS+  ++  +V    A +A  +F++M+   +  D   +++LI   + L  L+ G+  H  
Sbjct: 373 ISYGALLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGS 432

Query: 277 VVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
           V++ GL  E  + NS+I MY+KCG +D SR VF+++  + +VSW  +I+GY  +G  +EA
Sbjct: 433 VIIRGLALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEA 492

Query: 337 LNQFIKMRQE--KTDSVDSITLVSILTASGELAA----LEICLQLHGIAFEAGFPRYRSV 390
              F+ M+ +  + D V  I L++  + SG +       +     +GI      PR    
Sbjct: 493 TTLFLSMKNQGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGI-----LPRMEHY 547

Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRDV 420
             C++   ++ G +D AY   + M    DV
Sbjct: 548 I-CMVDLLARGGFLDEAYQFIQSMPLKADV 576


>gi|413946633|gb|AFW79282.1| hypothetical protein ZEAMMB73_599854 [Zea mays]
          Length = 863

 Score =  266 bits (681), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 161/548 (29%), Positives = 283/548 (51%), Gaps = 25/548 (4%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           +LS   + G+   A  +F ++PE++V SW++++ GY  +G  ++++  +  MM +G+ P+
Sbjct: 129 MLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKSGLLDEALDLYHRMMWAGVRPD 188

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGL--ESDLFEGLKNPY-------------- 114
            +T   VL +  G+ +  + R +H  +++FG   E D+   L   Y              
Sbjct: 189 VYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFGEEVDVLNALMTMYAKCGDVMAARKVFD 248

Query: 115 ------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
                  +S NA++AG   N      + LF       + PN +T+ +V      L     
Sbjct: 249 SMTVMDCISWNAMIAGHFENGECNAGLELFLTMLHDEVQPNLMTITSVTVASGLLSDVTF 308

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
            + +HGL +K G   DV+  NS++ MY+ L  +  A  +F  M+ +D ++WT M+  +  
Sbjct: 309 AKEMHGLAVKRGFAGDVAFCNSLIQMYASLGMMRQARTVFSRMDTRDAMTWTAMISGYEK 368

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
             +   AL+++  M  + +  D + + + ++  A LG L  G +LH      G  S + +
Sbjct: 369 NGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSLDVGVKLHELAESKGFISYIVV 428

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
           +N+I+ MY+K   +D +  VF  + EK +VSW+++I+G+  N    EAL  F  M  +  
Sbjct: 429 TNAILEMYAKSKRIDKAIEVFKCMHEKDVVSWSSMIAGFCFNHRNFEALYYFRHMLADVK 488

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
              +S+T ++ L A     AL    ++H      G      + N LI  Y KCG    A+
Sbjct: 489 P--NSVTFIAALAACAATGALRSGKEIHAHVLRCGIEYEGYLPNALIDLYVKCGQTGYAW 546

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
             F   G  +DVVSWN +I G+  +GHG+TAL+ +++M + GE PD  T++++L AC   
Sbjct: 547 AQFCAHG-AKDVVSWNIMIAGFVAHGHGDTALSFFNQMVKIGECPDEVTFVALLCACSRG 605

Query: 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRA 528
           G+ ++G  +F+ M E+  + P+ +HY C+VDLL+RAG L++A     ++       +W A
Sbjct: 606 GMVSEGWELFHSMTEKYSIVPNLKHYACMVDLLSRAGQLTEAYNFINEMPITPDAAVWGA 665

Query: 529 LLSGCVLH 536
           LL+GC +H
Sbjct: 666 LLNGCRIH 673



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 121/457 (26%), Positives = 216/457 (47%), Gaps = 39/457 (8%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L++ Y K G +  A  +FD +   + +SW+ +I G+  NG     ++ F  M+   + PN
Sbjct: 230 LMTMYAKCGDVMAARKVFDSMTVMDCISWNAMIAGHFENGECNAGLELFLTMLHDEVQPN 289

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------------FE 108
             T+  V VA+  L ++  A+ +HGL VK G   D+                      F 
Sbjct: 290 LMTITSVTVASGLLSDVTFAKEMHGLAVKRGFAGDVAFCNSLIQMYASLGMMRQARTVFS 349

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            +     ++  A+++G+  N    +A+ ++     + + P+ +T+ + +  C  LGS  +
Sbjct: 350 RMDTRDAMTWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSLDV 409

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
              +H L    G I  + V N++L+MY+    +D AI++F+ M  KDV+SW+ M+  F  
Sbjct: 410 GVKLHELAESKGFISYIVVTNAILEMYAKSKRIDKAIEVFKCMHEKDVVSWSSMIAGFCF 469

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
                +AL  FR M  + +  ++V  +  ++  A  G L+ GK++HA V+  G++ E  L
Sbjct: 470 NHRNFEALYYFRHML-ADVKPNSVTFIAALAACAATGALRSGKEIHAHVLRCGIEYEGYL 528

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL---NQFIKMRQ 345
            N++I +Y KCG    + + F     K +VSW  +I+G+V +G    AL   NQ +K+  
Sbjct: 529 PNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIMIAGFVAHGHGDTALSFFNQMVKI-- 586

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN-----CLISSYSK 400
              +  D +T V++L A      +    +L    F +   +Y  V N     C++   S+
Sbjct: 587 --GECPDEVTFVALLCACSRGGMVSEGWEL----FHSMTEKYSIVPNLKHYACMVDLLSR 640

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGE 437
            G +  AY    EM    D   W  ++ G  ++ H E
Sbjct: 641 AGQLTEAYNFINEMPITPDAAVWGALLNGCRIHRHVE 677



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/273 (28%), Positives = 140/273 (51%), Gaps = 2/273 (0%)

Query: 185 VSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRK 244
           + + N++L M     +   A ++F +M  +DV SW  M+G +       +AL ++  M  
Sbjct: 123 LRLGNAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKSGLLDEALDLYHRMMW 182

Query: 245 SRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDS 304
           + +  D      ++     + D + G+++HA V+  G   E+ + N+++ MY+KCGD+ +
Sbjct: 183 AGVRPDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFGEEVDVLNALMTMYAKCGDVMA 242

Query: 305 SRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASG 364
           +R VF+ +T    +SW A+I+G+ +NG     L  F+ M  ++    + +T+ S+  ASG
Sbjct: 243 ARKVFDSMTVMDCISWNAMIAGHFENGECNAGLELFLTMLHDEVQP-NLMTITSVTVASG 301

Query: 365 ELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWN 424
            L+ +    ++HG+A + GF    +  N LI  Y+  G +  A  VF  M   RD ++W 
Sbjct: 302 LLSDVTFAKEMHGLAVKRGFAGDVAFCNSLIQMYASLGMMRQARTVFSRMD-TRDAMTWT 360

Query: 425 TIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
            +I GY  NG  + AL +Y  M      PD  T
Sbjct: 361 AMISGYEKNGFPDKALEVYALMEVNNVSPDDIT 393



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 89/181 (49%), Gaps = 2/181 (1%)

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           LRL N++++M  + G+   +  VF ++ E+ + SW  ++ GY ++G   EAL+ + +M  
Sbjct: 123 LRLGNAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKSGLLDEALDLYHRMMW 182

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
                 D  T   +L + G +    +  ++H      GF     V N L++ Y+KCG+V 
Sbjct: 183 AGVRP-DVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFGEEVDVLNALMTMYAKCGDVM 241

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            A  VF+ M  + D +SWN +I G+  NG     L L+  M      P+  T  S+  A 
Sbjct: 242 AARKVFDSMTVM-DCISWNAMIAGHFENGECNAGLELFLTMLHDEVQPNLMTITSVTVAS 300

Query: 466 G 466
           G
Sbjct: 301 G 301



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/347 (22%), Positives = 157/347 (45%), Gaps = 28/347 (8%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + L+  Y   G +++A  +F  +  ++ ++W+ +I GY  NGF +K+++ ++ M ++ + 
Sbjct: 329 NSLIQMYASLGMMRQARTVFSRMDTRDAMTWTAMISGYEKNGFPDKALEVYALMEVNNVS 388

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES----------------------DL 106
           P+  T+   L A A L +L++   +H L    G  S                      ++
Sbjct: 389 PDDITIASALAACACLGSLDVGVKLHELAESKGFISYIVVTNAILEMYAKSKRIDKAIEV 448

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           F+ +    +VS ++++AGF  N    +A+  F       + PN+VT +  +  C A G+ 
Sbjct: 449 FKCMHEKDVVSWSSMIAGFCFNHRNFEALYYFRHMLAD-VKPNSVTFIAALAACAATGAL 507

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
              + IH   ++ G+  +  + N+++D+Y        A   F     KDV+SW  M+  F
Sbjct: 508 RSGKEIHAHVLRCGIEYEGYLPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIMIAGF 567

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQL-HAQVVLGGLQSE 285
           V   +   AL  F +M K     D V  + L+   +  G +  G +L H+      +   
Sbjct: 568 VAHGHGDTALSFFNQMVKIGECPDEVTFVALLCACSRGGMVSEGWELFHSMTEKYSIVPN 627

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC 332
           L+    ++ + S+ G L  + +  N++     ++  A + G + NGC
Sbjct: 628 LKHYACMVDLLSRAGQLTEAYNFINEMP----ITPDAAVWGALLNGC 670



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 104/219 (47%), Gaps = 35/219 (15%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ +L  Y KS +I +A  +F  + EK+VVSWS +I G+  N  + +++  F H ML+ +
Sbjct: 429 TNAILEMYAKSKRIDKAIEVFKCMHEKDVVSWSSMIAGFCFNHRNFEALYYFRH-MLADV 487

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES---------DLF----------- 107
            PNS T +  L A A    L   + IH  +++ G+E          DL+           
Sbjct: 488 KPNSVTFIAALAACAATGALRSGKEIHAHVLRCGIEYEGYLPNALIDLYVKCGQTGYAWA 547

Query: 108 ----EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
                G K+  +VS N ++AGF+ +     A+  FN     G  P+ VT + ++  C   
Sbjct: 548 QFCAHGAKD--VVSWNIMIAGFVAHGHGDTALSFFNQMVKIGECPDEVTFVALLCACSRG 605

Query: 164 GSRAL-CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDL 201
           G  +   EL H +T K  ++ +       L  Y+C++DL
Sbjct: 606 GMVSEGWELFHSMTEKYSIVPN-------LKHYACMVDL 637



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 100/244 (40%), Gaps = 21/244 (8%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y  + L+  Y K G+   A   F     K+VVSW+I+I G+  +G  + ++  F+ M+  
Sbjct: 527 YLPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIMIAGFVAHGHGDTALSFFNQMVKI 586

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGF 125
           G  P+  T V +L A +            G MV  G E  LF  +   Y +  N      
Sbjct: 587 GECPDEVTFVALLCACS-----------RGGMVSEGWE--LFHSMTEKYSIVPNLKHYAC 633

Query: 126 INNKLFQ--QAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLIL 183
           + + L +  Q    +NF     + P+A     ++ GC       L EL     + L    
Sbjct: 634 MVDLLSRAGQLTEAYNFINEMPITPDAAVWGALLNGCRIHRHVELGELAAKYVLALEPN- 692

Query: 184 DVSVNNSVLDMY--SCLMDLDAAI-QIFRE--MECKDVISWTRMMGLFVDFEYAGDALKI 238
           D   +  + D+Y  +CL D  A + +  RE  ++     SW  + G+   F    ++   
Sbjct: 693 DAGYHVLLCDLYADACLWDKLARVRKTMREKGLDHDSGCSWVEVKGVVHAFLTDDESHPQ 752

Query: 239 FREM 242
            RE+
Sbjct: 753 IREI 756


>gi|297740904|emb|CBI31086.3| unnamed protein product [Vitis vinifera]
          Length = 766

 Score =  266 bits (681), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 180/622 (28%), Positives = 303/622 (48%), Gaps = 61/622 (9%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           +KLL  Y   G   +A+N+F ++       W+ +I G+++ G  + ++  +  M+  G L
Sbjct: 85  TKLLGMYVLCGAFLDAKNIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTL 144

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG------------------- 109
           P+ +T   V+ A  GL ++ L R +H  +   G E D+F G                   
Sbjct: 145 PDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYL 204

Query: 110 ---LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
              + +   V  N ++ G++ N  +  A  +F   R +   PN+VT   V+  C +    
Sbjct: 205 FDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMI 264

Query: 167 ALCELIHGLTIKLGLILDVSVNNS--VLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
                +HGL +  GL +D  V N+  ++D+Y    D++ A +IF +    D++  T M+ 
Sbjct: 265 NFGSQLHGLVVSSGLEMDSPVANTFALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMIS 324

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            +V      +AL+IFR + + R+  ++V L +++   A L  L  GK+LH  ++  G   
Sbjct: 325 GYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGG 384

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
              + ++I+ MY+KCG LD +   F  I++K  V W ++I+   QNG   EA++ F +M 
Sbjct: 385 SCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMG 444

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
              T   D +++ + L+A   L AL    ++H       F      ++ LI  YSKCGN+
Sbjct: 445 MAGT-KYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNL 503

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           DLA  VF+ M   ++ VSWN+II  YG +G  + +L L+H M   G  PD  T+L+I++A
Sbjct: 504 DLACRVFDTME-EKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISA 562

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           CGHAG  ++G+  F  M EE  +    EHY C+VDL  RAG L++A G+   +       
Sbjct: 563 CGHAGQVDEGIHYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAG 622

Query: 525 IWRALLSGCVLH---------------------------------VGRFQDAEALRSGSQ 551
           +W  LL  C LH                                  G+++    +RS  +
Sbjct: 623 VWGTLLGACRLHGNVELAEVASRNLFDLDPQNSGYYVLLSNVHANAGQWESVLKIRSLMK 682

Query: 552 KKGIIKIPGISFL--NSTSRDF 571
           ++G+ K+PG S++  N+T+  F
Sbjct: 683 ERGVQKVPGCSWIDVNNTTHMF 704



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 138/512 (26%), Positives = 243/512 (47%), Gaps = 29/512 (5%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  S L+  Y ++G I +A  LFD +P K+ V W+++++GY  NG  + +   F  M
Sbjct: 180 LDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEM 239

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
             +   PNS T   VL   A    +     +HGL+V  GLE D                 
Sbjct: 240 RRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTFALIDIYFKCR 299

Query: 106 -------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                  +F+      +V C A+++G++ N +   A+ +F +     +  N+VT+ +V+ 
Sbjct: 300 DVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLP 359

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C  L +  L + +HG  +K G      V ++++DMY+    LD A Q F  +  KD + 
Sbjct: 360 ACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVC 419

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           W  M+          +A+ +FR+M  +    D V++   +S  A L  L  GK++HA ++
Sbjct: 420 WNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMM 479

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
            G  +S+L   +++I MYSKCG+LD +  VF+ + EK+ VSW +II+ Y  +G  +++LN
Sbjct: 480 RGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLN 539

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQ-LHGIAFEAGFPRYRSVQNCLISS 397
            F  M  +     D +T ++I++A G    ++  +     +  E G         C++  
Sbjct: 540 LFHGMLGDGIQP-DHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMARMEHYACMVDL 598

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           + + G ++ A+ +   M F  D   W T++    ++G+ E A      + +    P +S 
Sbjct: 599 FGRAGRLNEAFGMINSMPFSPDAGVWGTLLGACRLHGNVELAEVASRNLFDLD--PQNSG 656

Query: 458 YLSIL-NACGHAGLTNDGLVIFNQMIEENKVK 488
           Y  +L N   +AG     L I + M E    K
Sbjct: 657 YYVLLSNVHANAGQWESVLKIRSLMKERGVQK 688



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 96/368 (26%), Positives = 166/368 (45%), Gaps = 22/368 (5%)

Query: 114 YLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIH 173
           +L S    +  F  N +     L F+      L P  V++L     C      +     H
Sbjct: 13  FLPSTTFKLKSFHTNSVNIGKPLQFSIHNDDSLAPQLVSILQT---CTDPSGLSQGRQAH 69

Query: 174 GLTIKLGLILDVSVNNSVLDMYS-CLMDLDAAIQIFREME--CKDVISWT----RMMGLF 226
              +  G+  +  +   +L MY  C   LDA   IF ++   C +  +W      MMG F
Sbjct: 70  AQMLVNGIGYNGILGTKLLGMYVLCGAFLDAK-NIFYQLRLWCSEPWNWMIRGFTMMGQF 128

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
            DF     AL  + +M     + D      +I     L  +  G+ +H ++   G + ++
Sbjct: 129 -DF-----ALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELDV 182

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            + +S+I  YS+ G +  +R +F+++  K  V W  +++GYV+NG    A   F++MR+ 
Sbjct: 183 FVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRT 242

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN--CLISSYSKCGNV 404
           +T+  +S+T   +L+       +    QLHG+   +G      V N   LI  Y KC +V
Sbjct: 243 ETNP-NSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTFALIDIYFKCRDV 301

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           ++A  +F++   + D+V    +I GY +NG    AL ++  + +     +S T  S+L A
Sbjct: 302 EMARKIFDQRTPV-DIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPA 360

Query: 465 C-GHAGLT 471
           C G A LT
Sbjct: 361 CAGLAALT 368


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  266 bits (681), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 154/491 (31%), Positives = 269/491 (54%), Gaps = 25/491 (5%)

Query: 52  HEKSMKAF-SHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGL 110
           H+  +K   + +++ GL  + F +  ++ A++   ++  AR +             F+ L
Sbjct: 33  HKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQV-------------FDDL 79

Query: 111 KNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCE 170
             P +   NAI+ G+  N  FQ A+L+++  + + + P++ T   +++ C  L    +  
Sbjct: 80  PRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGR 139

Query: 171 LIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFR--EMECKDVISWTRMMGLFVD 228
            +H    +LG   DV V N ++ +Y+    L +A  +F    +  + ++SWT ++  +  
Sbjct: 140 FVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQ 199

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
                +AL+IF +MRK  +  D VAL+++++    L DLK+G+ +HA VV  GL+ E  L
Sbjct: 200 NGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDL 259

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
             S+  MY+KCG + +++ +F+++   +L+ W A+ISGY +NG AREA++ F +M   K 
Sbjct: 260 LISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEM-INKD 318

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS---VQNCLISSYSKCGNVD 405
              D+I++ S ++A  ++ +LE   Q   +    G   YR    + + LI  ++KCG+V+
Sbjct: 319 VRPDTISITSAISACAQVGSLE---QARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVE 375

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            A +VF+     RDVV W+ +I GYG++G    A++LY  M   G  P+  T+L +L AC
Sbjct: 376 GARLVFDRT-LDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMAC 434

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI 525
            H+G+  +G   FN+M  ++K+ P Q+HY CV+DLL RAG L  A  +   +    G  +
Sbjct: 435 NHSGMVREGWWFFNRM-ADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTV 493

Query: 526 WRALLSGCVLH 536
           W ALLS C  H
Sbjct: 494 WGALLSACKKH 504



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 113/453 (24%), Positives = 220/453 (48%), Gaps = 25/453 (5%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           +KL+      G I  A  +FD++P   +  W+ +I GYS N   + ++  +S+M L+ + 
Sbjct: 57  TKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVS 116

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--------------------- 107
           P+SFT   +L A +GL +L++ R +H  + + G ++D+F                     
Sbjct: 117 PDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTV 176

Query: 108 -EGLKNP--YLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
            EGL  P   +VS  AIV+ +  N    +A+ +F+  R   + P+ V +++V+     L 
Sbjct: 177 FEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQ 236

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
                  IH   +K+GL ++  +  S+  MY+    +  A  +F +M+  ++I W  M+ 
Sbjct: 237 DLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMIS 296

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            +    YA +A+ +F EM    +  DT+++ + IS  A +G L++ + ++  V     + 
Sbjct: 297 GYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRD 356

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           ++ +S+++I M++KCG ++ +R VF++  ++ +V W+A+I GY  +G AREA++ +  M 
Sbjct: 357 DVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAME 416

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
           +      D +T + +L A      +           +      +    C+I    + G++
Sbjct: 417 RGGVHPND-VTFLGLLMACNHSGMVREGWWFFNRMADHKINPQQQHYACVIDLLGRAGHL 475

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGE 437
           D AY V + M     V  W  ++     + H E
Sbjct: 476 DQAYEVIKCMPVQPGVTVWGALLSACKKHRHVE 508



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 107/392 (27%), Positives = 197/392 (50%), Gaps = 7/392 (1%)

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
           +A  + IH   + LGL     +   ++   S   D+  A Q+F ++    +  W  ++  
Sbjct: 34  KAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRG 93

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +    +  DAL ++  M+ +R+  D+    +L+   + L  L+ G+ +HAQV   G  ++
Sbjct: 94  YSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDAD 153

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFN--QITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
           + + N +IA+Y+KC  L S+R+VF    + E+++VSWTAI+S Y QNG   EAL  F +M
Sbjct: 154 VFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQM 213

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
           R+      D + LVS+L A   L  L+    +H    + G      +   L + Y+KCG 
Sbjct: 214 RKMDVKP-DWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQ 272

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           V  A I+F++M    +++ WN +I GY  NG+   A+ ++H+M      PD+ +  S ++
Sbjct: 273 VATAKILFDKMK-SPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAIS 331

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
           AC   G       ++ + +  +  +        ++D+ A+ G +  A  +  + L+    
Sbjct: 332 ACAQVGSLEQARSMY-EYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLD-RDV 389

Query: 524 NIWRALLSGCVLHVGRFQDAEALRSGSQKKGI 555
            +W A++ G  LH GR ++A +L    ++ G+
Sbjct: 390 VVWSAMIVGYGLH-GRAREAISLYRAMERGGV 420



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 88/180 (48%), Gaps = 22/180 (12%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           I+P     L + Y K G++  A+ LFD++   N++ W+ +I GY+ NG+  +++  F  M
Sbjct: 255 IEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEM 314

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--------------- 107
           +   + P++ ++   + A A + +LE ARS++  + +     D+F               
Sbjct: 315 INKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSV 374

Query: 108 EGLK-------NPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
           EG +       +  +V  +A++ G+  +   ++A+ L+      G+ PN VT L ++  C
Sbjct: 375 EGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMAC 434


>gi|356554981|ref|XP_003545819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  266 bits (681), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 177/573 (30%), Positives = 285/573 (49%), Gaps = 33/573 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVS-WSIVIHGYSINGFHEKSMKAFSHM 62
           D +    L++ Y        A+ +FD +     +S W+ ++ GY+ N  + ++++ F  +
Sbjct: 37  DIFLCKTLINQYLSCHLYDHAKCVFDNMENPCEISLWNGLMAGYTKNYMYVEALELFEKL 96

Query: 63  M-LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------- 105
           +    L P+S+T   V  A  GL    L + IH  ++K GL  D                
Sbjct: 97  LHYPYLKPDSYTYPSVFKACGGLHRYVLGKMIHTCLIKTGLMMDIVVGSSLVGMYGKCNA 156

Query: 106 ------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                 LF  +    +   N +++ +  +  F+ A+  F   R  G  PN+VT+ T I  
Sbjct: 157 FEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKDALEYFGLMRRFGFEPNSVTITTAISS 216

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C  L        IH   I  G +LD  ++++++DMY     L+ AI+IF +M  K V++W
Sbjct: 217 CARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEIFEQMPKKTVVAW 276

Query: 220 TRMMGLFVDFEYAGD---ALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQ 276
             M+     +   GD    +++F+ M    +      L +LI V +    L  GK +H  
Sbjct: 277 NSMIS---GYGLKGDIISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGY 333

Query: 277 VVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
            +   +Q ++ +++S++ +Y KCG ++ +  +F  I +  +VSW  +ISGYV  G   EA
Sbjct: 334 TIRNRIQPDVFVNSSLMDLYFKCGKVELAEKIFKLIPKSKVVSWNVMISGYVAEGKLFEA 393

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
           L  F +MR+   +S D+IT  S+LTA  +LAALE   ++H +  E        V   L+ 
Sbjct: 394 LGLFSEMRKSYVES-DAITFTSVLTACSQLAALEKGKEIHNLIIEKKLDNNEVVMGALLD 452

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
            Y+KCG VD A+ VF+ +   RD+VSW ++I  YG +GH   AL L+ +M ++   PD  
Sbjct: 453 MYAKCGAVDEAFSVFKCLP-KRDLVSWTSMITAYGSHGHAYGALELFAEMLQSNVKPDRV 511

Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK 516
            +L+IL+ACGHAGL ++G   FNQMI    + P  EHY C++DLL RAG L +A  +  +
Sbjct: 512 AFLAILSACGHAGLVDEGCYYFNQMINVYGIIPRVEHYSCLIDLLGRAGRLHEAYEILQQ 571

Query: 517 LLEGMGP-NIWRALLSGCVLHVGRFQDAEALRS 548
             E      +   L S C LH      AE  R+
Sbjct: 572 NPEIRDDVELLSTLFSACRLHRNIDLGAEIART 604



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 131/465 (28%), Positives = 230/465 (49%), Gaps = 27/465 (5%)

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF---------------------- 107
           ++  ++ +L A    ++L+  + IH  +V  GL++D+F                      
Sbjct: 2   DTRKLLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKTLINQYLSCHLYDHAKCVF 61

Query: 108 EGLKNPYLVSC-NAIVAGFINNKLFQQAVLLF-NFFRGSGLVPNAVTMLTVIRGCVALGS 165
           + ++NP  +S  N ++AG+  N ++ +A+ LF        L P++ T  +V + C  L  
Sbjct: 62  DNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKACGGLHR 121

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
             L ++IH   IK GL++D+ V +S++ MY      + AI +F EM  KDV  W  ++  
Sbjct: 122 YVLGKMIHTCLIKTGLMMDIVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVACWNTVISC 181

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +       DAL+ F  MR+     ++V +   IS  A L DL RG ++H +++  G   +
Sbjct: 182 YYQSGNFKDALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLD 241

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
             +S++++ MY KCG L+ +  +F Q+ +K++V+W ++ISGY   G     +  F +M  
Sbjct: 242 SFISSALVDMYGKCGHLEMAIEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQLFKRMYN 301

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
           E      + TL S++      A L     +HG            V + L+  Y KCG V+
Sbjct: 302 EGVKPTLT-TLSSLIMVCSRSARLLEGKFVHGYTIRNRIQPDVFVNSSLMDLYFKCGKVE 360

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
           LA  +F+ +   + VVSWN +I GY   G    AL L+ +M ++    D+ T+ S+L AC
Sbjct: 361 LAEKIFKLIPKSK-VVSWNVMISGYVAEGKLFEALGLFSEMRKSYVESDAITFTSVLTAC 419

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
                   G  I N +IE+ K+  ++   G ++D+ A+ G + +A
Sbjct: 420 SQLAALEKGKEIHNLIIEK-KLDNNEVVMGALLDMYAKCGAVDEA 463



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 133/500 (26%), Positives = 237/500 (47%), Gaps = 28/500 (5%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           S L+  Y K    ++A  LF+E+PEK+V  W+ VI  Y  +G  + +++ F  M   G  
Sbjct: 145 SSLVGMYGKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKDALEYFGLMRRFGFE 204

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------L 106
           PNS T+   + + A L +L     IH  ++  G   D                      +
Sbjct: 205 PNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEI 264

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           FE +    +V+ N++++G+         + LF      G+ P   T+ ++I  C      
Sbjct: 265 FEQMPKKTVVAWNSMISGYGLKGDIISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARL 324

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
              + +HG TI+  +  DV VN+S++D+Y     ++ A +IF+ +    V+SW  M+  +
Sbjct: 325 LEGKFVHGYTIRNRIQPDVFVNSSLMDLYFKCGKVELAEKIFKLIPKSKVVSWNVMISGY 384

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
           V      +AL +F EMRKS +  D +   ++++  + L  L++GK++H  ++   L +  
Sbjct: 385 VAEGKLFEALGLFSEMRKSYVESDAITFTSVLTACSQLAALEKGKEIHNLIIEKKLDNNE 444

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            +  +++ MY+KCG +D + SVF  + ++ LVSWT++I+ Y  +G A  AL  F +M Q 
Sbjct: 445 VVMGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHGHAYGALELFAEMLQS 504

Query: 347 KTDSVDSITLVSILTASGELAAL-EICLQLHGIAFEAG-FPRYRSVQNCLISSYSKCGNV 404
                D +  ++IL+A G    + E C   + +    G  PR     +CLI    + G +
Sbjct: 505 NVKP-DRVAFLAILSACGHAGLVDEGCYYFNQMINVYGIIPRVEHY-SCLIDLLGRAGRL 562

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILN 463
             AY + ++   +RD V   + ++      H    L      T   + P DSSTY+ + N
Sbjct: 563 HEAYEILQQNPEIRDDVELLSTLFS-ACRLHRNIDLGAEIARTLIDKDPDDSSTYILLSN 621

Query: 464 ACGHAGLTNDGLVIFNQMIE 483
               A   ++  V+ ++M E
Sbjct: 622 MYASAHKWDEVRVVRSKMKE 641



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 162/335 (48%), Gaps = 23/335 (6%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D + SS L+  Y K G ++ A  +F+++P+K VV+W+ +I GY + G     ++ F  M
Sbjct: 240 LDSFISSALVDMYGKCGHLEMAIEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQLFKRM 299

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY------ 114
              G+ P   T+  +++  +    L   + +HG  ++  ++ D+F    L + Y      
Sbjct: 300 YNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQPDVFVNSSLMDLYFKCGKV 359

Query: 115 --------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                         +VS N +++G++      +A+ LF+  R S +  +A+T  +V+  C
Sbjct: 360 ELAEKIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVESDAITFTSVLTAC 419

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             L +    + IH L I+  L  +  V  ++LDMY+    +D A  +F+ +  +D++SWT
Sbjct: 420 SQLAALEKGKEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWT 479

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV-L 279
            M+  +    +A  AL++F EM +S +  D VA L ++S     G +  G     Q++ +
Sbjct: 480 SMITAYGSHGHAYGALELFAEMLQSNVKPDRVAFLAILSACGHAGLVDEGCYYFNQMINV 539

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE 314
            G+   +   + +I +  + G L  +  +  Q  E
Sbjct: 540 YGIIPRVEHYSCLIDLLGRAGRLHEAYEILQQNPE 574



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 132/287 (45%), Gaps = 10/287 (3%)

Query: 250 DTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVF 309
           DT  LL L+        LK+GK +H +VV  GLQ+++ L  ++I  Y  C   D ++ VF
Sbjct: 2   DTRKLLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKTLINQYLSCHLYDHAKCVF 61

Query: 310 NQITEKSLVS-WTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAA 368
           + +     +S W  +++GY +N    EAL  F K+        DS T  S+  A G L  
Sbjct: 62  DNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKACGGLHR 121

Query: 369 LEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIY 428
             +   +H    + G      V + L+  Y KC   + A  +F EM   +DV  WNT+I 
Sbjct: 122 YVLGKMIHTCLIKTGLMMDIVVGSSLVGMYGKCNAFEKAIWLFNEMP-EKDVACWNTVIS 180

Query: 429 GYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVK 488
            Y  +G+ + AL  +  M   G  P+S T  + +++C      N G+ I  ++I    + 
Sbjct: 181 CYYQSGNFKDALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLL 240

Query: 489 PSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI---WRALLSG 532
            S      +VD+  + G L     +A ++ E M       W +++SG
Sbjct: 241 DSFIS-SALVDMYGKCGHLE----MAIEIFEQMPKKTVVAWNSMISG 282


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  266 bits (681), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 186/613 (30%), Positives = 311/613 (50%), Gaps = 59/613 (9%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKN-VVSWSIVIHGYSINGFHEKSMKAFSHMMLSG 66
           ++ L+S Y K   I  A  LFD + E+N VVSW+ +I  YS+NG   +++  F  M  +G
Sbjct: 48  ANSLVSMYAKCNDILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAG 107

Query: 67  LLPNSFTMVGVLVAAAGLQNLELARSIHG-------------------LMVKFG---LES 104
           +  N++T+V  L A       +L   IH                    + V+FG     +
Sbjct: 108 VGANTYTLVAALQACEDSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAA 167

Query: 105 DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
            +F+ L     ++ N+++AGF  N L+ +A+  F   + + L P+ V++++++     LG
Sbjct: 168 RIFDELDEKDNITWNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLG 227

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
                + IH   +K  L  ++ + N+++DMYS    +  A  +F +M  KD+ISWT ++ 
Sbjct: 228 YLLNGKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIA 287

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            +       +ALK+ R+++   +  DT+ + + +   + L  L   K++H   +  GL S
Sbjct: 288 AYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRGL-S 346

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           +L + N II +Y+ CG+++ +  +F  I  K +VSWT++IS YV NG A EAL  F  M+
Sbjct: 347 DLMMQNMIIDVYADCGNINYATRMFESIKCKDVVSWTSMISCYVHNGLANEALGVFYLMK 406

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
           +   +  DSITLVSIL+A+  L+AL    ++HG  F  GF    S  N L+  Y+ CG++
Sbjct: 407 ETSVEP-DSITLVSILSAAASLSALNKGKEIHGFIFRKGFMLEGSTVNSLVDMYACCGSL 465

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           + AY VF      + +V W T+I  YG++G G+ A+ L+  M +   +PD  T+L++L A
Sbjct: 466 ENAYKVFI-CTRSKSLVLWTTMINAYGMHGRGKAAVELFSIMEDQKLIPDHITFLALLYA 524

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C H+GL N+G  +   M  + +++P  EHY C+VDLL RA  L +A      +       
Sbjct: 525 CSHSGLINEGKRLLETMKCKYQLEPWPEHYACLVDLLGRANHLEEAYHFVKSMQIEPTAE 584

Query: 525 IWRALLSGCVLH---------------------------------VGRFQDAEALRSGSQ 551
           +W A L  C +H                                  GR++D E +R   +
Sbjct: 585 VWCAFLGACRIHSNKKLGEIAAQKLLDLDPDSPGSYVLISNVFAASGRWKDVEEVRMRMK 644

Query: 552 KKGIIKIPGISFL 564
             G+ K PG S++
Sbjct: 645 GGGLKKNPGCSWI 657



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 142/464 (30%), Positives = 236/464 (50%), Gaps = 32/464 (6%)

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY----- 114
           M + G+  +SFT   VL A   ++++     IHGL++K G +S +F    L + Y     
Sbjct: 1   MRVLGVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCND 60

Query: 115 ----------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                           +VS N+I++ +  N    +A+ LF   + +G+  N  T++  ++
Sbjct: 61  ILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQ 120

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C     + L   IH   +K   +LDV V N+++ M+     +  A +IF E++ KD I+
Sbjct: 121 ACEDSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNIT 180

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           W  M+  F       +AL+ F  ++ + +  D V+L+++++ +  LG L  GK++HA  +
Sbjct: 181 WNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAM 240

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
              L S LR+ N++I MYSKC  +  +  VF+++  K L+SWT +I+ Y QN C  EAL 
Sbjct: 241 KNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEAL- 299

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
           + ++  Q K   VD++ + S L A   L  L    ++HG   + G      +QN +I  Y
Sbjct: 300 KLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRGLSDLM-MQNMIIDVY 358

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
           + CGN++ A  +FE +   +DVVSW ++I  Y  NG    AL +++ M ET   PDS T 
Sbjct: 359 ADCGNINYATRMFESIK-CKDVVSWTSMISCYVHNGLANEALGVFYLMKETSVEPDSITL 417

Query: 459 LSILNACGHAGLTNDGL----VIFNQ--MIEENKVKPSQEHYGC 496
           +SIL+A       N G      IF +  M+E + V    + Y C
Sbjct: 418 VSILSAAASLSALNKGKEIHGFIFRKGFMLEGSTVNSLVDMYAC 461



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 104/382 (27%), Positives = 204/382 (53%), Gaps = 24/382 (6%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D Y ++ L++ + + GK+  A  +FDE+ EK+ ++W+ +I G++ NG + ++++ F  +
Sbjct: 145 LDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAGFTQNGLYNEALQFFCGL 204

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------- 106
             + L P+  +++ +L A+  L  L   + IH   +K  L+S+L                
Sbjct: 205 QDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCV 264

Query: 107 ------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                 F+ + N  L+S   ++A +  N    +A+ L    +  G+  + + + + +  C
Sbjct: 265 AYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLAC 324

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             L   +  + +HG T+K GL  D+ + N ++D+Y+   +++ A ++F  ++CKDV+SWT
Sbjct: 325 SGLRCLSHAKEVHGYTLKRGLS-DLMMQNMIIDVYADCGNINYATRMFESIKCKDVVSWT 383

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+  +V    A +AL +F  M+++ +  D++ L++++S  A L  L +GK++H  +   
Sbjct: 384 SMISCYVHNGLANEALGVFYLMKETSVEPDSITLVSILSAAASLSALNKGKEIHGFIFRK 443

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           G   E    NS++ MY+ CG L+++  VF     KSLV WT +I+ Y  +G  + A+  F
Sbjct: 444 GFMLEGSTVNSLVDMYACCGSLENAYKVFICTRSKSLVLWTTMINAYGMHGRGKAAVELF 503

Query: 341 IKMRQEKTDSVDSITLVSILTA 362
             M  +K    D IT +++L A
Sbjct: 504 SIMEDQKLIP-DHITFLALLYA 524


>gi|297850056|ref|XP_002892909.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338751|gb|EFH69168.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1038

 Score =  266 bits (681), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 165/551 (29%), Positives = 288/551 (52%), Gaps = 29/551 (5%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+S +   G +  A  +F++I E++ +SW+ ++  Y+ NG  E+S + F+ M       N
Sbjct: 302 LISMFGNMGNVDYANYIFNQISERDTISWNSIVAAYAQNGHIEESSRIFNLMRRFHDEVN 361

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGL---------------------ESDL-FE 108
           S T+  +L     + + +  R IHGL+VK G                      E+DL F+
Sbjct: 362 STTVSTLLSVLGDVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSEEADLVFK 421

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            +    L+S N+++A F+N+     A+ +      +G   N VT  + +  C +      
Sbjct: 422 QMPTKDLISWNSLMASFVNDGRSLDALGILCSMIRTGKSVNYVTFTSALAACFSPEFFDK 481

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
             ++HGL +  GL  +  + N+++ MY  +  +  + ++  +M  +DV++W  ++G + +
Sbjct: 482 GRILHGLVVVSGLFDNQIIGNALVSMYGKIGGMSTSRRVLLQMPRRDVVAWNALIGGYAE 541

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDL-KRGKQLHAQVVLGGLQSELR 287
            E    AL  F+ +R   +  + + +++++S   + GDL +RGK LHA +V  G +S+  
Sbjct: 542 NEDPDKALAAFQTLRVEGVSANYITVVSVLSACLVPGDLLERGKPLHAYIVSAGFESDEH 601

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
           + NS+I MY+KCGDL SS+ +FN +  +S+++W AI++    +G   E L    KMR   
Sbjct: 602 VKNSLITMYAKCGDLSSSQDLFNGLDNRSIITWNAILAANAHHGHGEEVLKLVSKMRSFG 661

Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
             S+D  +    L+A+ +LA LE   QLHG+A + GF     + N     YSKCG +   
Sbjct: 662 L-SLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFELDCFIFNAAADMYSKCGEIGEV 720

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
             +       R + SWN +I   G +G+ E     +H+M E G  P   T++S+L AC H
Sbjct: 721 VKMLPP-SVNRSLPSWNILISALGRHGYFEEVCETFHEMLEMGIKPGHVTFVSLLTACSH 779

Query: 468 AGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN--I 525
            GL + GL  ++ + ++  ++P+ EH  CV+DLL R+G L++A     K+   M PN  +
Sbjct: 780 GGLVDQGLAYYDMIAKDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKM--PMKPNDLV 837

Query: 526 WRALLSGCVLH 536
           WR+LL+ C +H
Sbjct: 838 WRSLLASCKIH 848



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 160/557 (28%), Positives = 269/557 (48%), Gaps = 37/557 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y S+ +L  Y   G +  +  +F+E+P++NVVSW+ ++ GYS  G  E+ +  +  M 
Sbjct: 194 DVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKSMR 253

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------- 106
             G+  N  +M  V+ +   L++  L R I G ++K GLES L                 
Sbjct: 254 GEGVECNENSMSLVISSCGLLKDESLGRQIIGQVIKSGLESKLAVENSLISMFGNMGNVD 313

Query: 107 -----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                F  +     +S N+IVA +  N   +++  +FN  R      N+ T+ T++    
Sbjct: 314 YANYIFNQISERDTISWNSIVAAYAQNGHIEESSRIFNLMRRFHDEVNSTTVSTLLSVLG 373

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            +  +     IHGL +K+G    V V N++L MY+     + A  +F++M  KD+ISW  
Sbjct: 374 DVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSEEADLVFKQMPTKDLISWNS 433

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           +M  FV+   + DAL I   M ++    + V   + ++         +G+ LH  VV+ G
Sbjct: 434 LMASFVNDGRSLDALGILCSMIRTGKSVNYVTFTSALAACFSPEFFDKGRILHGLVVVSG 493

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           L     + N++++MY K G + +SR V  Q+  + +V+W A+I GY +N    +AL  F 
Sbjct: 494 LFDNQIIGNALVSMYGKIGGMSTSRRVLLQMPRRDVVAWNALIGGYAENEDPDKALAAFQ 553

Query: 342 KMRQEKTDSVDSITLVSILTA---SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
            +R E   S + IT+VS+L+A    G+L  LE    LH     AGF     V+N LI+ Y
Sbjct: 554 TLRVEGV-SANYITVVSVLSACLVPGDL--LERGKPLHAYIVSAGFESDEHVKNSLITMY 610

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
           +KCG++  +  +F  +   R +++WN I+     +GHGE  L L  KM   G   D  ++
Sbjct: 611 AKCGDLSSSQDLFNGLDN-RSIITWNAILAANAHHGHGEEVLKLVSKMRSFGLSLDQFSF 669

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
              L+A     +  +G     Q +    VK   E   C +     A  +    G  G+++
Sbjct: 670 SEGLSAAAKLAVLEEG-----QQLHGLAVKLGFE-LDCFI--FNAAADMYSKCGEIGEVV 721

Query: 519 EGMGPNIWRALLSGCVL 535
           + + P++ R+L S  +L
Sbjct: 722 KMLPPSVNRSLPSWNIL 738



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 134/483 (27%), Positives = 238/483 (49%), Gaps = 27/483 (5%)

Query: 7   NSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSG 66
           +++ L++ Y K G++K A  LFD++P +N VSW+ ++ G    G + + M+ F  M   G
Sbjct: 95  HTNTLINMYTKFGRVKPARYLFDKMPVRNEVSWNTMMSGIVRVGLYLEGMEFFQKMCDLG 154

Query: 67  LLPNSFTMVGVLVAAAGLQN--LELARSIHGLMVKFGLESD------------------- 105
           + P+SF ++  LV A G           +HG + K GL SD                   
Sbjct: 155 IKPSSF-VIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSC 213

Query: 106 ---LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA 162
              +FE + +  +VS  +++ G+ +    ++ + ++   RG G+  N  +M  VI  C  
Sbjct: 214 SRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKSMRGEGVECNENSMSLVISSCGL 273

Query: 163 LGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
           L   +L   I G  IK GL   ++V NS++ M+  + ++D A  IF ++  +D ISW  +
Sbjct: 274 LKDESLGRQIIGQVIKSGLESKLAVENSLISMFGNMGNVDYANYIFNQISERDTISWNSI 333

Query: 223 MGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL 282
           +  +    +  ++ +IF  MR+     ++  +  L+SV   +   K G+ +H  VV  G 
Sbjct: 334 VAAYAQNGHIEESSRIFNLMRRFHDEVNSTTVSTLLSVLGDVDHQKWGRGIHGLVVKMGF 393

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
            S + + N+++ MY+  G  + +  VF Q+  K L+SW ++++ +V +G + +AL     
Sbjct: 394 DSVVCVCNTLLRMYAGAGRSEEADLVFKQMPTKDLISWNSLMASFVNDGRSLDALGILCS 453

Query: 343 MRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
           M +    SV+ +T  S L A       +    LHG+   +G    + + N L+S Y K G
Sbjct: 454 MIR-TGKSVNYVTFTSALAACFSPEFFDKGRILHGLVVVSGLFDNQIIGNALVSMYGKIG 512

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
            +  +  V  +M   RDVV+WN +I GY  N   + ALA +  +   G   +  T +S+L
Sbjct: 513 GMSTSRRVLLQMP-RRDVVAWNALIGGYAENEDPDKALAAFQTLRVEGVSANYITVVSVL 571

Query: 463 NAC 465
           +AC
Sbjct: 572 SAC 574



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 106/374 (28%), Positives = 201/374 (53%), Gaps = 5/374 (1%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           LF+ +     VS N +++G +   L+ + +  F      G+ P++  + +++  C   GS
Sbjct: 115 LFDKMPVRNEVSWNTMMSGIVRVGLYLEGMEFFQKMCDLGIKPSSFVIASLVTACGRSGS 174

Query: 166 --RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
             R   + +HG   K GL+ DV V+ ++L +Y     +  + ++F EM  ++V+SWT +M
Sbjct: 175 MFREGVQ-VHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLM 233

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
             + D     + + I++ MR   + C+  ++  +IS   +L D   G+Q+  QV+  GL+
Sbjct: 234 VGYSDKGEPEEVIDIYKSMRGEGVECNENSMSLVISSCGLLKDESLGRQIIGQVIKSGLE 293

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
           S+L + NS+I+M+   G++D +  +FNQI+E+  +SW +I++ Y QNG   E+   F  M
Sbjct: 294 SKLAVENSLISMFGNMGNVDYANYIFNQISERDTISWNSIVAAYAQNGHIEESSRIFNLM 353

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
           R+   D V+S T+ ++L+  G++   +    +HG+  + GF     V N L+  Y+  G 
Sbjct: 354 RRFH-DEVNSTTVSTLLSVLGDVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGR 412

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
            + A +VF++M   +D++SWN+++  +  +G    AL +   M  TG+  +  T+ S L 
Sbjct: 413 SEEADLVFKQMP-TKDLISWNSLMASFVNDGRSLDALGILCSMIRTGKSVNYVTFTSALA 471

Query: 464 ACGHAGLTNDGLVI 477
           AC      + G ++
Sbjct: 472 ACFSPEFFDKGRIL 485



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 144/348 (41%), Gaps = 63/348 (18%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L++ Y K G +  +++LF+ +  +++++W+ ++   + +G  E+ +K  S M 
Sbjct: 599 DEHVKNSLITMYAKCGDLSSSQDLFNGLDNRSIITWNAILAANAHHGHGEEVLKLVSKMR 658

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF---------------- 107
             GL  + F+    L AAA L  LE  + +HGL VK G E D F                
Sbjct: 659 SFGLSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFELDCFIFNAAADMYSKCGEIG 718

Query: 108 EGLK------NPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
           E +K      N  L S N +++    +  F++    F+     G+ P  VT ++++  C 
Sbjct: 719 EVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCETFHEMLEMGIKPGHVTFVSLLTACS 778

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
                      HG  +  GL        +  DM +    L+ AI+      C  VI    
Sbjct: 779 -----------HGGLVDQGL--------AYYDMIAKDFGLEPAIE-----HCICVIDLLG 814

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
             G   + E           + K  +  + +   +L++   I  DL RG++  A   L  
Sbjct: 815 RSGRLAEAETF---------ISKMPMKPNDLVWRSLLASCKIHRDLDRGRK--AAENLSK 863

Query: 282 LQSE----LRLSNSIIAMYSKCGDLDSSRSV--FNQITEKSLVSWTAI 323
           L+ E      LS+++ A   +  D+++ R    F  I +K   SW  +
Sbjct: 864 LEPEDDSVFVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKL 911


>gi|218188593|gb|EEC71020.1| hypothetical protein OsI_02714 [Oryza sativa Indica Group]
          Length = 825

 Score =  266 bits (680), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 172/618 (27%), Positives = 296/618 (47%), Gaps = 58/618 (9%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
            DPY SS L+  Y   G++  AE    + P ++ VSW+ +++ Y+ +G + K M  F  +
Sbjct: 194 FDPYVSSSLVEAYVSCGEVDVAERALLDSPVRSDVSWNALLNEYARDGDYAKVMLVFDKL 253

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
           + SG   + +T+  VL     L   +  +++HGL++K GLE+D                 
Sbjct: 254 VESGDEISKYTLPTVLKCCMELGLAKSGQAVHGLVIKRGLETDRVLNNCLIEMYSKCLSA 313

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +F  +  P +V C+ +++ F  + +  +A  +F      G+ PN  T + +    
Sbjct: 314 EDAYEVFARIDEPDVVHCSLMISCFDRHDMAPEAFDIFMQMSDMGVKPNQYTFVGLAIVA 373

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
              G   LC  IH   +K G      V ++++ MY     +  AI  F  M+  D+ SW 
Sbjct: 374 SRTGDVNLCRSIHAHIVKSGFSRTKGVCDAIVGMYVKTGAVQDAILAFDLMQGPDIASWN 433

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++  F         L+IF+E+    ++ +    + ++     L DL+ G Q+HA V+  
Sbjct: 434 TLLSGFYSGNNCEHGLRIFKELICEGVLANKYTYVGILRCCTSLMDLRFGCQVHACVLKS 493

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           G Q +  +S  ++ MY + G   ++R VF+++ E+ + SWT ++S Y +     +A+  F
Sbjct: 494 GFQGDYDVSKMLLDMYVQAGCFTNARLVFDRLKERDVFSWTVVMSTYAKTDEGEKAIECF 553

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
             M +E     D+ TL + L+   +LA L   LQLH    ++G+     V + L+  Y K
Sbjct: 554 RSMLRENKRPNDA-TLATSLSVCSDLACLGSGLQLHSYTIKSGW-NSSVVSSALVDMYVK 611

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CGN+  A ++F+E     D+V WNTII GY  +GHG  AL  + +M + G VPD  T++ 
Sbjct: 612 CGNLADAEMLFDESD-THDLVEWNTIICGYAQHGHGYKALEAFQEMIDEGNVPDEITFVG 670

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           +L+AC HAGL ++G   F  +     + P+ EHY C+VD+LA+AG L++A  L  ++   
Sbjct: 671 VLSACSHAGLLDEGRRYFKLLSSVYGITPTLEHYACMVDILAKAGKLAEAESLINEMPLT 730

Query: 521 MGPNIWRALLSGCVLH---------------------------------VGRFQDAEALR 547
              ++W+ +L  C +H                                 + R+ D   LR
Sbjct: 731 PDASLWKTILGACRMHGNIEIAERAAEKLFESQPDDISSCILLSNIYADLKRWNDVAKLR 790

Query: 548 SGSQKKGIIKIPGISFLN 565
           S    +G+ K PG S++ 
Sbjct: 791 SMLVDRGVKKEPGCSWIE 808



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 134/542 (24%), Positives = 239/542 (44%), Gaps = 40/542 (7%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  D +    LL+ Y K G++ +A ++FD +P ++VV+W+ ++   +  G    +++ F+
Sbjct: 91  PRPDAFLHDSLLNMYCKCGRLADARSVFDGMPHRDVVAWTAMVSAITAAGDAGAALRLFA 150

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYL----- 115
            M   G++PN F +   L A     +L     +H   VK        EGL +PY+     
Sbjct: 151 EMSEEGVVPNGFALAAALKACTVGSDLGFTPQVHAQAVK-------LEGLFDPYVSSSLV 203

Query: 116 ---VSC---------------------NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAV 151
              VSC                     NA++  +  +  + + +L+F+    SG   +  
Sbjct: 204 EAYVSCGEVDVAERALLDSPVRSDVSWNALLNEYARDGDYAKVMLVFDKLVESGDEISKY 263

Query: 152 TMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM 211
           T+ TV++ C+ LG     + +HGL IK GL  D  +NN +++MYS  +  + A ++F  +
Sbjct: 264 TLPTVLKCCMELGLAKSGQAVHGLVIKRGLETDRVLNNCLIEMYSKCLSAEDAYEVFARI 323

Query: 212 ECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGK 271
           +  DV+  + M+  F   + A +A  IF +M    +  +    + L  V +  GD+   +
Sbjct: 324 DEPDVVHCSLMISCFDRHDMAPEAFDIFMQMSDMGVKPNQYTFVGLAIVASRTGDVNLCR 383

Query: 272 QLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNG 331
            +HA +V  G      + ++I+ MY K G +  +   F+ +    + SW  ++SG+    
Sbjct: 384 SIHAHIVKSGFSRTKGVCDAIVGMYVKTGAVQDAILAFDLMQGPDIASWNTLLSGFYSGN 443

Query: 332 CAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ 391
                L  F ++  E     +  T V IL     L  L    Q+H    ++GF     V 
Sbjct: 444 NCEHGLRIFKELICEGV-LANKYTYVGILRCCTSLMDLRFGCQVHACVLKSGFQGDYDVS 502

Query: 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE 451
             L+  Y + G    A +VF+ +   RDV SW  ++  Y     GE A+  +  M    +
Sbjct: 503 KMLLDMYVQAGCFTNARLVFDRLK-ERDVFSWTVVMSTYAKTDEGEKAIECFRSMLRENK 561

Query: 452 VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDAS 511
            P+ +T  + L+ C        GL + +  I+      S      +VD+  + G L+DA 
Sbjct: 562 RPNDATLATSLSVCSDLACLGSGLQLHSYTIKSG--WNSSVVSSALVDMYVKCGNLADAE 619

Query: 512 GL 513
            L
Sbjct: 620 ML 621



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 105/381 (27%), Positives = 183/381 (48%), Gaps = 10/381 (2%)

Query: 155 TVIRGCVALGSRAL--CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME 212
             ++GC A  SRAL   + +H   ++ G   D  +++S+L+MY     L  A  +F  M 
Sbjct: 65  AALQGCAA--SRALRRGKALHARLLRSGPRPDAFLHDSLLNMYCKCGRLADARSVFDGMP 122

Query: 213 CKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQ 272
            +DV++WT M+        AG AL++F EM +  ++ +  AL   +    +  DL    Q
Sbjct: 123 HRDVVAWTAMVSAITAAGDAGAALRLFAEMSEEGVVPNGFALAAALKACTVGSDLGFTPQ 182

Query: 273 LHAQVV-LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNG 331
           +HAQ V L GL  +  +S+S++  Y  CG++D +         +S VSW A+++ Y ++G
Sbjct: 183 VHAQAVKLEGL-FDPYVSSSLVEAYVSCGEVDVAERALLDSPVRSDVSWNALLNEYARDG 241

Query: 332 CAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ 391
              + +  F K+  E  D +   TL ++L    EL   +    +HG+  + G    R + 
Sbjct: 242 DYAKVMLVFDKL-VESGDEISKYTLPTVLKCCMELGLAKSGQAVHGLVIKRGLETDRVLN 300

Query: 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE 451
           NCLI  YSKC + + AY VF  +    DVV  + +I  +  +     A  ++ +M++ G 
Sbjct: 301 NCLIEMYSKCLSAEDAYEVFARID-EPDVVHCSLMISCFDRHDMAPEAFDIFMQMSDMGV 359

Query: 452 VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDAS 511
            P+  T++ +       G  N    I   +++    + ++     +V +  + G + DA 
Sbjct: 360 KPNQYTFVGLAIVASRTGDVNLCRSIHAHIVKSGFSR-TKGVCDAIVGMYVKTGAVQDAI 418

Query: 512 GLAGKLLEGMGPNIWRALLSG 532
            LA  L++G     W  LLSG
Sbjct: 419 -LAFDLMQGPDIASWNTLLSG 438


>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g13230, mitochondrial-like [Brachypodium distachyon]
          Length = 1206

 Score =  266 bits (680), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 170/577 (29%), Positives = 290/577 (50%), Gaps = 28/577 (4%)

Query: 3    IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
            +D + ++ LL+ Y K G    A  +FD +PE+N+VS+  ++ G+++ G  E++   F  +
Sbjct: 463  LDLFCANVLLNMYTKVGPFGSAHRVFDGLPERNMVSFVTLVQGHALRGEFEEASALFQRL 522

Query: 63   MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
               G   N F +  VL     +  L LA  +H    K G + +                 
Sbjct: 523  RWEGHEVNQFVLTTVLKLVVAMDTLGLAWGVHACACKLGHDRNAFVGSALIDAYSMCGVV 582

Query: 106  -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                 +F+G+     V+  A+V+ +  N   +  + +F+  R +    N   + +V+R  
Sbjct: 583  SDARRVFDGIVGKDAVAWTAMVSCYSENDCPENTLQIFSKMRVAVSKLNPFALTSVLRAA 642

Query: 161  VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
            V L S  L + IH  ++K     +  V  ++LDMY+   +++ A   F  +   DVI W+
Sbjct: 643  VCLSSVVLGKGIHACSVKTLYDTERHVYGALLDMYAKCGNIEDARLAFEMVTNDDVILWS 702

Query: 221  RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
             M+  +        A ++F  M +S +  +  +L +++   A +  L  GKQ+H   +  
Sbjct: 703  LMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQACANMPLLDLGKQIHNHAIKI 762

Query: 281  GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
            G +SEL + N++I +Y+KC D++SS  +F+ + + + VSW  II GY ++G    AL+ F
Sbjct: 763  GHESELFVGNALIDLYAKCSDMESSLEIFSSLRDVNEVSWNTIIVGYSKSGFGEAALSVF 822

Query: 341  IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
             +MR     S   +T  S+L A    A++    Q+H +  ++ F     V N LI SY+K
Sbjct: 823  REMRAASVPSTQ-VTYSSVLRACASTASINHVGQVHCLIEKSTFNSDTIVSNSLIDSYAK 881

Query: 401  CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
            CG +  A  +FE +    D+VSWN II GY V+G    A  L+  M++     +  T+++
Sbjct: 882  CGCIRDAREIFETLKEC-DLVSWNAIISGYAVHGQAAMAQELFDMMSKNSIKANDITFVA 940

Query: 461  ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
            +L+ CG  GL + GL +F+ M  ++ ++PS EHY C+V LL RAG L+DA    G +   
Sbjct: 941  LLSVCGSTGLVSQGLSLFDSMRLDHGIEPSMEHYTCIVRLLGRAGRLNDALNFIGDIPSA 1000

Query: 521  MGPNIWRALLSGCVLH----VGRFQDAEALRSGSQKK 553
                +WRALLS C++H    +GRF   + L    Q +
Sbjct: 1001 PSAMVWRALLSSCIVHKNVELGRFSAEKVLEIEPQDE 1037



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 138/470 (29%), Positives = 234/470 (49%), Gaps = 17/470 (3%)

Query: 76  GVLVAAAGLQNLEL--ARSIHGLMVK---FGLESDLFEGLKNPYLVSCNAIVAGFINNKL 130
           G +V + GL  L+L  A  +  +  K   FG    +F+GL    +VS   +V G      
Sbjct: 452 GHVVRSGGLARLDLFCANVLLNMYTKVGPFGSAHRVFDGLPERNMVSFVTLVQGHALRGE 511

Query: 131 FQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNS 190
           F++A  LF   R  G   N   + TV++  VA+ +  L   +H    KLG   +  V ++
Sbjct: 512 FEEASALFQRLRWEGHEVNQFVLTTVLKLVVAMDTLGLAWGVHACACKLGHDRNAFVGSA 571

Query: 191 VLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICD 250
           ++D YS    +  A ++F  +  KD ++WT M+  + + +   + L+IF +MR +    +
Sbjct: 572 LIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYSENDCPENTLQIFSKMRVAVSKLN 631

Query: 251 TVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFN 310
             AL +++     L  +  GK +HA  V     +E  +  +++ MY+KCG+++ +R  F 
Sbjct: 632 PFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTERHVYGALLDMYAKCGNIEDARLAFE 691

Query: 311 QITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALE 370
            +T   ++ W+ +IS Y Q     +A   FI+M +    S +  +L S+L A   +  L+
Sbjct: 692 MVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSV-SPNEFSLSSVLQACANMPLLD 750

Query: 371 ICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDV--VSWNTIIY 428
           +  Q+H  A + G      V N LI  Y+KC +++ +  +F     LRDV  VSWNTII 
Sbjct: 751 LGKQIHNHAIKIGHESELFVGNALIDLYAKCSDMESSLEIFSS---LRDVNEVSWNTIIV 807

Query: 429 GYGVNGHGETALALYHKMTETGEVPDSS-TYLSILNACGH-AGLTNDGLVIFNQMIEENK 486
           GY  +G GE AL+++ +M     VP +  TY S+L AC   A + + G V  + +IE++ 
Sbjct: 808 GYSKSGFGEAALSVFREM-RAASVPSTQVTYSSVLRACASTASINHVGQV--HCLIEKST 864

Query: 487 VKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
                     ++D  A+ GC+ DA  +   L E    + W A++SG  +H
Sbjct: 865 FNSDTIVSNSLIDSYAKCGCIRDAREIFETLKECDLVS-WNAIISGYAVH 913



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 125/490 (25%), Positives = 223/490 (45%), Gaps = 37/490 (7%)

Query: 9    SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
            S L+  Y   G + +A  +FD I  K+ V+W+ ++  YS N   E +++ FS M ++   
Sbjct: 570  SALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYSENDCPENTLQIFSKMRVAVSK 629

Query: 69   PNSFTMVGVLVAAAGLQNLELARSIHGLMVK---------FGLESDL------------- 106
             N F +  VL AA  L ++ L + IH   VK         +G   D+             
Sbjct: 630  LNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTERHVYGALLDMYAKCGNIEDARLA 689

Query: 107  FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
            FE + N  ++  + +++ +      +QA  LF     S + PN  ++ +V++ C  +   
Sbjct: 690  FEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQACANMPLL 749

Query: 167  ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
             L + IH   IK+G   ++ V N+++D+Y+   D++++++IF  +   + +SW  ++  +
Sbjct: 750  DLGKQIHNHAIKIGHESELFVGNALIDLYAKCSDMESSLEIFSSLRDVNEVSWNTIIVGY 809

Query: 227  VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
                +   AL +FREMR + +    V   +++   A    +    Q+H  +      S+ 
Sbjct: 810  SKSGFGEAALSVFREMRAASVPSTQVTYSSVLRACASTASINHVGQVHCLIEKSTFNSDT 869

Query: 287  RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
             +SNS+I  Y+KCG +  +R +F  + E  LVSW AIISGY  +G A  A   F  M + 
Sbjct: 870  IVSNSLIDSYAKCGCIRDAREIFETLKECDLVSWNAIISGYAVHGQAAMAQELFDMMSKN 929

Query: 347  KTDSVDSITLVSILTASGELAALEICLQL-------HGIAFEAGFPRYRSVQNCLISSYS 399
               + D IT V++L+  G    +   L L       HGI  E     Y     C++    
Sbjct: 930  SIKAND-ITFVALLSVCGSTGLVSQGLSLFDSMRLDHGI--EPSMEHY----TCIVRLLG 982

Query: 400  KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
            + G ++ A     ++      + W  ++    V+ + E       K+ E  E  D +TY+
Sbjct: 983  RAGRLNDALNFIGDIPSAPSAMVWRALLSSCIVHKNVELGRFSAEKVLEI-EPQDETTYV 1041

Query: 460  SILNACGHAG 469
             + N    AG
Sbjct: 1042 LLSNMYSAAG 1051



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 162/333 (48%), Gaps = 10/333 (3%)

Query: 156 VIRGCVALGSRALCELIHGLTIKLGLI--LDVSVNNSVLDMYSCLMDLDAAIQIFREMEC 213
           +++GCVA G       +HG  ++ G +  LD+   N +L+MY+ +    +A ++F  +  
Sbjct: 434 LLQGCVARGDARGGRAVHGHVVRSGGLARLDLFCANVLLNMYTKVGPFGSAHRVFDGLPE 493

Query: 214 KDVISWTRMM---GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG 270
           ++++S+  ++    L  +FE   +A  +F+ +R      +   L  ++ +   +  L   
Sbjct: 494 RNMVSFVTLVQGHALRGEFE---EASALFQRLRWEGHEVNQFVLTTVLKLVVAMDTLGLA 550

Query: 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
             +HA     G      + +++I  YS CG +  +R VF+ I  K  V+WTA++S Y +N
Sbjct: 551 WGVHACACKLGHDRNAFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYSEN 610

Query: 331 GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV 390
            C    L  F KMR      ++   L S+L A+  L+++ +   +H  + +  +   R V
Sbjct: 611 DCPENTLQIFSKMRV-AVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTERHV 669

Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
              L+  Y+KCGN++ A + F EM    DV+ W+ +I  Y      E A  L+ +M  + 
Sbjct: 670 YGALLDMYAKCGNIEDARLAF-EMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSS 728

Query: 451 EVPDSSTYLSILNACGHAGLTNDGLVIFNQMIE 483
             P+  +  S+L AC +  L + G  I N  I+
Sbjct: 729 VSPNEFSLSSVLQACANMPLLDLGKQIHNHAIK 761


>gi|413932901|gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
          Length = 853

 Score =  266 bits (680), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 173/617 (28%), Positives = 309/617 (50%), Gaps = 57/617 (9%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  S L+  Y  +G +  A + FD IPE++ V W++++ G    G  + +++ F +M 
Sbjct: 175 DVYVGSALVKMYADAGLLGNARDAFDGIPERDCVLWNVMMDGCIKAGDVDGAVRLFRNMR 234

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
            SG  PN  T+   L   A   +L     +H L VK GLE +                  
Sbjct: 235 ASGCEPNFATLACFLSVCATDADLLSGAQLHSLAVKCGLEPEVAVANTLLAMYAKCQCLD 294

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               LFE +    LV+ N +++G + N LF +A  LF   + SG  P+++T+++++    
Sbjct: 295 DAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQRSGARPDSITLVSLLPALT 354

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            L      + +HG  ++  + +DV + ++++D+Y    D+  A  ++      DV+  + 
Sbjct: 355 DLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQNLYDAARAIDVVIGST 414

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+  +V    + +AL++FR + +  I  + V + +++   A +  L  G+Q+H  V+   
Sbjct: 415 MISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAALPLGQQIHGYVLRNA 474

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
            + +  + ++++ MY+KCG LD S  +F ++++K  V+W ++IS + QNG  +EAL+ F 
Sbjct: 475 YERKCYVESALMDMYAKCGRLDLSHYIFLKMSQKDEVTWNSMISSFSQNGKPQEALDLFR 534

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +M  E     ++IT+ + L+A   L A+    ++HG+  +         ++ LI  Y+KC
Sbjct: 535 QMCMEGI-KYNNITISAALSACASLPAIYYGKEIHGVTIKGPIKADIFAESALIDMYAKC 593

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           GN++LA  VFE M   ++ VSWN+II  YG +G  + +++L H M E G  PD  T+L++
Sbjct: 594 GNLELALRVFEFMPD-KNEVSWNSIISAYGAHGLVKESVSLLHGMQEEGYKPDHVTFLAL 652

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           ++AC HAGL  +G+ +F  M ++  + P  EH+ C+VDL +R+G L  A      +    
Sbjct: 653 ISACAHAGLVEEGVQLFQCMTKKYLIAPRMEHFACMVDLYSRSGKLDKAIQFIADMPFKP 712

Query: 522 GPNIWRALLSGCVLH---------------------------------VGRFQDAEALRS 548
              IW ALL  C +H                                  GR+     +R 
Sbjct: 713 DAGIWGALLHACRVHRNVELADIASQELFKLDPANSGYYVLMSNINAVAGRWDGVSKVRR 772

Query: 549 GSQKKGIIKIPGISFLN 565
             +   I+KIPG S+++
Sbjct: 773 LMKDNKILKIPGYSWVD 789



 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 157/594 (26%), Positives = 284/594 (47%), Gaps = 55/594 (9%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVS---WSIVIHGYSINGFHEKSM----KAFSH 61
           ++LL  Y  + + ++A  +F  +P     S   W+ +I G++  G H  ++    K +SH
Sbjct: 74  TRLLGMYVLARRFRDAVAVFSALPRAAAASSLPWNWLIRGFTAAGQHHLAVLFYVKMWSH 133

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL--------------- 106
                  P++ T+  V+ + A L  + L R +H      GL +D+               
Sbjct: 134 PAAPS--PDAHTLPYVVKSCAALGAMSLGRLVHRTARAIGLANDVYVGSALVKMYADAGL 191

Query: 107 -------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                  F+G+     V  N ++ G I       AV LF   R SG  PN  T+   +  
Sbjct: 192 LGNARDAFDGIPERDCVLWNVMMDGCIKAGDVDGAVRLFRNMRASGCEPNFATLACFLSV 251

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C           +H L +K GL  +V+V N++L MY+    LD A ++F  M   D+++W
Sbjct: 252 CATDADLLSGAQLHSLAVKCGLEPEVAVANTLLAMYAKCQCLDDAWRLFELMPQDDLVTW 311

Query: 220 TRMM------GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQL 273
             M+      GLFV+      A  +F +M++S    D++ L++L+     L  LK+GK++
Sbjct: 312 NGMISGCVQNGLFVE------AFGLFYDMQRSGARPDSITLVSLLPALTDLNGLKQGKEV 365

Query: 274 HAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA 333
           H  +V   +  ++ L ++++ +Y KC D+  ++++++      +V  + +ISGYV NG +
Sbjct: 366 HGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQNLYDAARAIDVVIGSTMISGYVLNGMS 425

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC 393
            EAL  F +   E+    +++T+ S+L     +AAL +  Q+HG      + R   V++ 
Sbjct: 426 EEALQMF-RYLLEQCIKPNAVTIASVLPGCASMAALPLGQQIHGYVLRNAYERKCYVESA 484

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           L+  Y+KCG +DL++ +F +M   +D V+WN++I  +  NG  + AL L+ +M   G   
Sbjct: 485 LMDMYAKCGRLDLSHYIFLKMS-QKDEVTWNSMISSFSQNGKPQEALDLFRQMCMEGIKY 543

Query: 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL 513
           ++ T  + L+AC        G  I    I +  +K        ++D+ A+ G L     L
Sbjct: 544 NNITISAALSACASLPAIYYGKEIHGVTI-KGPIKADIFAESALIDMYAKCGNLE----L 598

Query: 514 AGKLLEGMGPN---IWRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFL 564
           A ++ E M       W +++S    H G  +++ +L  G Q++G  K   ++FL
Sbjct: 599 ALRVFEFMPDKNEVSWNSIISAYGAH-GLVKESVSLLHGMQEEG-YKPDHVTFL 650



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 157/327 (48%), Gaps = 25/327 (7%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  S L+  YFK   ++ A+NL+D     +VV  S +I GY +NG  E++++ F ++
Sbjct: 376 MDVFLVSALVDIYFKCRDVRMAQNLYDAARAIDVVIGSTMISGYVLNGMSEEALQMFRYL 435

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
           +   + PN+ T+  VL   A +  L L + IHG +++   E                   
Sbjct: 436 LEQCIKPNAVTIASVLPGCASMAALPLGQQIHGYVLRNAYERKCYVESALMDMYAKCGRL 495

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +F  +     V+ N++++ F  N   Q+A+ LF      G+  N +T+   +  C
Sbjct: 496 DLSHYIFLKMSQKDEVTWNSMISSFSQNGKPQEALDLFRQMCMEGIKYNNITISAALSAC 555

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
            +L +    + IHG+TIK  +  D+   ++++DMY+   +L+ A+++F  M  K+ +SW 
Sbjct: 556 ASLPAIYYGKEIHGVTIKGPIKADIFAESALIDMYAKCGNLELALRVFEFMPDKNEVSWN 615

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++  +       +++ +   M++     D V  L LIS  A  G ++ G QL  Q +  
Sbjct: 616 SIISAYGAHGLVKESVSLLHGMQEEGYKPDHVTFLALISACAHAGLVEEGVQLF-QCMTK 674

Query: 281 GLQSELRLSN--SIIAMYSKCGDLDSS 305
                 R+ +   ++ +YS+ G LD +
Sbjct: 675 KYLIAPRMEHFACMVDLYSRSGKLDKA 701



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 90/326 (27%), Positives = 151/326 (46%), Gaps = 10/326 (3%)

Query: 147 VPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILD---VSVNNSVLDMYSCLMDLDA 203
           V +A  +L V+RGCV+     L   IH   +  G + D   ++++  +L MY        
Sbjct: 29  VSSADRLLAVLRGCVSAPHLPLGLQIHARAVVSGALSDHNHLALHTRLLGMYVLARRFRD 88

Query: 204 AIQIFREMECKDVISWTRMMGLFVDFEYAGD---ALKIFREM--RKSRIICDTVALLNLI 258
           A+ +F  +      S      L   F  AG    A+  + +M    +    D   L  ++
Sbjct: 89  AVAVFSALPRAAAASSLPWNWLIRGFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVV 148

Query: 259 SVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLV 318
              A LG +  G+ +H      GL +++ + ++++ MY+  G L ++R  F+ I E+  V
Sbjct: 149 KSCAALGAMSLGRLVHRTARAIGLANDVYVGSALVKMYADAGLLGNARDAFDGIPERDCV 208

Query: 319 SWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGI 378
            W  ++ G ++ G    A+  F  MR    +  +  TL   L+     A L    QLH +
Sbjct: 209 LWNVMMDGCIKAGDVDGAVRLFRNMRASGCEP-NFATLACFLSVCATDADLLSGAQLHSL 267

Query: 379 AFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGET 438
           A + G     +V N L++ Y+KC  +D A+ +FE M    D+V+WN +I G   NG    
Sbjct: 268 AVKCGLEPEVAVANTLLAMYAKCQCLDDAWRLFELMP-QDDLVTWNGMISGCVQNGLFVE 326

Query: 439 ALALYHKMTETGEVPDSSTYLSILNA 464
           A  L++ M  +G  PDS T +S+L A
Sbjct: 327 AFGLFYDMQRSGARPDSITLVSLLPA 352


>gi|449522418|ref|XP_004168223.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Cucumis sativus]
          Length = 743

 Score =  266 bits (679), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 174/557 (31%), Positives = 284/557 (50%), Gaps = 22/557 (3%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  S L+S Y K G I     +FD + ++NVV W+ +I  YS  G  + +   F  M 
Sbjct: 83  DSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTTIIGSYSREGDIDIAFSMFKQMR 142

Query: 64  LSGLLPNSFTMVGVLVAAAGL----------------QNLELARSIHGLMVKFGLESD-- 105
            SG+ P S T++ +L   + L                 +L L+ S+  +  K G  +D  
Sbjct: 143 ESGIQPTSVTLLSLLPGISKLPLLLCLHCLIILHGFESDLALSNSMVNMYGKCGRIADAR 202

Query: 106 -LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
            LFE +    +VS N++++ +      ++ + L    +   + P+  T  + +      G
Sbjct: 203 RLFESIGCRDIVSWNSLLSAYSKIGATEEILQLLQAMKIEDIKPDKQTFCSALSASAIKG 262

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
              L +L+HGL +K GL +D  V ++++ +Y     LD A ++F+    KDV+ WT M+ 
Sbjct: 263 DLRLGKLVHGLMLKDGLNIDQHVESALVVLYLRCRCLDPAYKVFKSTTEKDVVMWTAMIS 322

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
             V  + A  AL +F +M +S +   T  L + ++  A LG    G  +H  V+  G+  
Sbjct: 323 GLVQNDCADKALGVFYQMIESNVKPSTATLASGLAACAQLGCCDIGASIHGYVLRQGIML 382

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           ++   NS++ MY+KC  L  S S+FN++ EK LVSW AI++G+ +NG   + +  F +MR
Sbjct: 383 DIPAQNSLVTMYAKCNKLQQSCSIFNKMVEKDLVSWNAIVAGHAKNGYLSKGIFFFNEMR 442

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
           +      DSIT+ S+L A G   AL     +H     +        +  L+  Y KCGN+
Sbjct: 443 KSFLRP-DSITVTSLLQACGSAGALCQGKWIHNFVLRSSLIPCIMTETALVDMYFKCGNL 501

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           + A   F+ M   RD+V+W+T+I GYG NG GE AL  Y +   TG  P+   ++S+L+A
Sbjct: 502 ENAQKCFDCM-LQRDLVAWSTLIVGYGFNGKGEIALRKYSEFLGTGMEPNHVIFISVLSA 560

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C H GL + GL I+  M ++ ++ P+ EH  CVVDLL+RAG + +A      + +     
Sbjct: 561 CSHGGLISKGLSIYESMTKDFRMSPNLEHRACVVDLLSRAGKVDEAYSFYKMMFKEPSIV 620

Query: 525 IWRALLSGCVLHVGRFQ 541
           +   LL  C ++ GR +
Sbjct: 621 VLGMLLDACRVN-GRVE 636



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 121/484 (25%), Positives = 228/484 (47%), Gaps = 33/484 (6%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ +++ Y K G+I +A  LF+ I  +++VSW+ ++  YS  G  E+ ++    M +  +
Sbjct: 185 SNSMVNMYGKCGRIADARRLFESIGCRDIVSWNSLLSAYSKIGATEEILQLLQAMKIEDI 244

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
            P+  T    L A+A   +L L + +HGLM+K GL  D                      
Sbjct: 245 KPDKQTFCSALSASAIKGDLRLGKLVHGLMLKDGLNIDQHVESALVVLYLRCRCLDPAYK 304

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F+      +V   A+++G + N    +A+ +F     S + P+  T+ + +  C  LG 
Sbjct: 305 VFKSTTEKDVVMWTAMISGLVQNDCADKALGVFYQMIESNVKPSTATLASGLAACAQLGC 364

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
             +   IHG  ++ G++LD+   NS++ MY+    L  +  IF +M  KD++SW  ++  
Sbjct: 365 CDIGASIHGYVLRQGIMLDIPAQNSLVTMYAKCNKLQQSCSIFNKMVEKDLVSWNAIVAG 424

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
                Y    +  F EMRKS +  D++ + +L+      G L +GK +H  V+   L   
Sbjct: 425 HAKNGYLSKGIFFFNEMRKSFLRPDSITVTSLLQACGSAGALCQGKWIHNFVLRSSLIPC 484

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           +    +++ MY KCG+L++++  F+ + ++ LV+W+ +I GY  NG    AL ++ +   
Sbjct: 485 IMTETALVDMYFKCGNLENAQKCFDCMLQRDLVAWSTLIVGYGFNGKGEIALRKYSEFLG 544

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN-----CLISSYSK 400
              +  + +  +S+L+A      +   L +    +E+    +R   N     C++   S+
Sbjct: 545 TGMEP-NHVIFISVLSACSHGGLISKGLSI----YESMTKDFRMSPNLEHRACVVDLLSR 599

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
            G VD AY  ++ M     +V    ++    VNG  E    +   M E   V D   ++ 
Sbjct: 600 AGKVDEAYSFYKMMFKEPSIVVLGMLLDACRVNGRVELGKVIARDMFELKPV-DPGNFVQ 658

Query: 461 ILNA 464
           + N+
Sbjct: 659 LANS 662



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 141/299 (47%), Gaps = 7/299 (2%)

Query: 236 LKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAM 295
           L+ +  M+K+    D     +L      L     G  LH  VV+ GL  +  + +S+I+ 
Sbjct: 34  LQTYISMQKTHTQLDAYTFPSLFKACTNLNLFSHGLSLHQSVVVNGLSHDSYIGSSLISF 93

Query: 296 YSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSIT 355
           Y+K G +   R VF+ + ++++V WT II  Y + G    A + F +MR+       S+T
Sbjct: 94  YAKFGCIHLGRKVFDTMLKRNVVPWTTIIGSYSREGDIDIAFSMFKQMRESGIQPT-SVT 152

Query: 356 LVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMG 415
           L+S+L     ++ L + L LH +    GF    ++ N +++ Y KCG +  A  +FE +G
Sbjct: 153 LLSLLPG---ISKLPLLLCLHCLIILHGFESDLALSNSMVNMYGKCGRIADARRLFESIG 209

Query: 416 FLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGL 475
             RD+VSWN+++  Y   G  E  L L   M      PD  T+ S L+A    G    G 
Sbjct: 210 -CRDIVSWNSLLSAYSKIGATEEILQLLQAMKIEDIKPDKQTFCSALSASAIKGDLRLGK 268

Query: 476 VIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCV 534
           ++   M+++  +   Q     +V L  R  CL  A  +     E     +W A++SG V
Sbjct: 269 LVHGLMLKDG-LNIDQHVESALVVLYLRCRCLDPAYKVFKSTTEK-DVVMWTAMISGLV 325



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 90/392 (22%), Positives = 176/392 (44%), Gaps = 32/392 (8%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           ID +  S L+  Y +   +  A  +F    EK+VV W+ +I G   N   +K++  F  M
Sbjct: 281 IDQHVESALVVLYLRCRCLDPAYKVFKSTTEKDVVMWTAMISGLVQNDCADKALGVFYQM 340

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
           + S + P++ T+   L A A L   ++  SIHG +++ G+  D                 
Sbjct: 341 IESNVKPSTATLASGLAACAQLGCCDIGASIHGYVLRQGIMLDIPAQNSLVTMYAKCNKL 400

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +F  +    LVS NAIVAG   N    + +  FN  R S L P+++T+ ++++ C
Sbjct: 401 QQSCSIFNKMVEKDLVSWNAIVAGHAKNGYLSKGIFFFNEMRKSFLRPDSITVTSLLQAC 460

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
            + G+    + IH   ++  LI  +    +++DMY    +L+ A + F  M  +D+++W+
Sbjct: 461 GSAGALCQGKWIHNFVLRSSLIPCIMTETALVDMYFKCGNLENAQKCFDCMLQRDLVAWS 520

Query: 221 RMMGLFVDFEYAGD---ALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
               L V + + G    AL+ + E   + +  + V  ++++S  +  G + +G  ++  +
Sbjct: 521 T---LIVGYGFNGKGEIALRKYSEFLGTGMEPNHVIFISVLSACSHGGLISKGLSIYESM 577

Query: 278 VLG-GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQI-TEKSLVSWTAIISGYVQNGCARE 335
                +   L     ++ + S+ G +D + S +  +  E S+V    ++     NG  R 
Sbjct: 578 TKDFRMSPNLEHRACVVDLLSRAGKVDEAYSFYKMMFKEPSIVVLGMLLDACRVNG--RV 635

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELA 367
            L + I     +   VD    V +  +   ++
Sbjct: 636 ELGKVIARDMFELKPVDPGNFVQLANSYASMS 667


>gi|356566136|ref|XP_003551291.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 733

 Score =  266 bits (679), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 181/610 (29%), Positives = 291/610 (47%), Gaps = 58/610 (9%)

Query: 12  LSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML-SGLLPN 70
           L    K G++ +A  +FD++  ++ +SW+ +I GY       +++  FS+M +  G   +
Sbjct: 64  LKQLVKQGQLCKARYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVHPGPQRD 123

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF----------------------E 108
            F +   L A A   N+     +HG  VK GL   +F                      E
Sbjct: 124 QFMISVALKACALGVNICFGELLHGFSVKSGLIHSVFVSSALIDMYMKVGKIEQGCRVFE 183

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            +    +VS  AI+AG ++     + +L F+    S +  ++ T    ++          
Sbjct: 184 KMMTRNVVSWTAIIAGLVHAGYNMEGLLYFSEMWRSKVGYDSHTFAIALKASADSSLLHH 243

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
            + IH  TIK G      V N++  MY+     D  +++F +M   DV+SWT ++  +V 
Sbjct: 244 GKAIHTQTIKQGFDESSFVINTLATMYNKCGKPDYVMRLFEKMRMPDVVSWTTLISTYVQ 303

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
                 A++ F+ MRKS +  +      +IS  A L   K G+Q+H  V+  GL + L +
Sbjct: 304 MGEEEHAVEAFKRMRKSYVSPNKYTFAAVISSCANLAAAKWGEQIHGHVLRLGLVNALSV 363

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
           +NSII +YSKCG L S+  VF+ IT K ++SW+ IIS Y Q G A+EA +    MR+E  
Sbjct: 364 ANSIITLYSKCGLLKSASLVFHGITRKDIISWSTIISVYSQGGYAKEAFDYLSWMRREGP 423

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
              +   L S+L+  G +A LE   Q+H      G      V + +IS YSKCG+V  A 
Sbjct: 424 KP-NEFALSSVLSVCGSMALLEQGKQVHAHLLCIGIDHEAMVHSAIISMYSKCGSVQEAS 482

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
            +F  M  + D++SW  +I GY  +G+ + A+ L+ K++  G  PD   ++ +L AC HA
Sbjct: 483 KIFNGMK-INDIISWTAMINGYAEHGYSQEAINLFEKISSVGLKPDYVMFIGVLTACNHA 541

Query: 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRA 528
           G+ + G   F  M    ++ PS+EHYGC++DLL RAG LS+A  +   +       +W  
Sbjct: 542 GMVDLGFYYFMLMTNVYRISPSKEHYGCLIDLLCRAGRLSEAEHIIRSMPFHTDDVVWST 601

Query: 529 LLSGCVLH---------------------------------VGRFQDAEALRSGSQKKGI 555
           LL  C +H                                  GR+++A  +R   + KG+
Sbjct: 602 LLRACRVHGDVDRGRWTAEQLLQLDPNSAGTHITLANIYAAKGRWKEAAHIRKLMKSKGV 661

Query: 556 IKIPGISFLN 565
           IK  G S++N
Sbjct: 662 IKERGWSWVN 671



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 134/465 (28%), Positives = 225/465 (48%), Gaps = 54/465 (11%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           SS L+  Y K GKI++   +F+++  +NVVSW+ +I G    G++ + +  FS M  S +
Sbjct: 162 SSALIDMYMKVGKIEQGCRVFEKMMTRNVVSWTAIIAGLVHAGYNMEGLLYFSEMWRSKV 221

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
             +S T    L A+A    L   ++IH   +K G +                        
Sbjct: 222 GYDSHTFAIALKASADSSLLHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKPDYVMR 281

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           LFE ++ P +VS   +++ ++     + AV  F   R S + PN  T   VI  C  L +
Sbjct: 282 LFEKMRMPDVVSWTTLISTYVQMGEEEHAVEAFKRMRKSYVSPNKYTFAAVISSCANLAA 341

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
               E IHG  ++LGL+  +SV NS++ +YS    L +A  +F  +  KD+ISW+ ++ +
Sbjct: 342 AKWGEQIHGHVLRLGLVNALSVANSIITLYSKCGLLKSASLVFHGITRKDIISWSTIISV 401

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +    YA +A      MR+     +  AL +++SV   +  L++GKQ+HA ++  G+  E
Sbjct: 402 YSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHLLCIGIDHE 461

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
             + ++II+MYSKCG +  +  +FN +    ++SWTA+I+GY ++G ++EA+N F     
Sbjct: 462 AMVHSAIISMYSKCGSVQEASKIFNGMKINDIISWTAMINGYAEHGYSQEAINLF----- 516

Query: 346 EKTDSV----DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN--------- 392
           EK  SV    D +  + +LTA             H    + GF  +  + N         
Sbjct: 517 EKISSVGLKPDYVMFIGVLTACN-----------HAGMVDLGFYYFMLMTNVYRISPSKE 565

Query: 393 ---CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNG 434
              CLI    + G +  A  +   M F  D V W+T++    V+G
Sbjct: 566 HYGCLIDLLCRAGRLSEAEHIIRSMPFHTDDVVWSTLLRACRVHG 610



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 90/197 (45%), Gaps = 5/197 (2%)

Query: 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD 349
           NS +    K G L  +R +F+++T +  +SWT +I+GYV    + EAL  F  M      
Sbjct: 61  NSELKQLVKQGQLCKARYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVHPGP 120

Query: 350 SVDSITLVSILTASGELAALEICLQ--LHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
             D   +   L A      + IC    LHG + ++G      V + LI  Y K G ++  
Sbjct: 121 QRDQFMISVALKACA--LGVNICFGELLHGFSVKSGLIHSVFVSSALIDMYMKVGKIEQG 178

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
             VFE+M   R+VVSW  II G    G+    L  + +M  +    DS T+   L A   
Sbjct: 179 CRVFEKM-MTRNVVSWTAIIAGLVHAGYNMEGLLYFSEMWRSKVGYDSHTFAIALKASAD 237

Query: 468 AGLTNDGLVIFNQMIEE 484
           + L + G  I  Q I++
Sbjct: 238 SSLLHHGKAIHTQTIKQ 254


>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  266 bits (679), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 175/609 (28%), Positives = 291/609 (47%), Gaps = 60/609 (9%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTM 74
           Y K   I  A  LFD++ ++N  SW+++I G + NG      + F  M   G+ P+ F  
Sbjct: 115 YSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAY 174

Query: 75  VGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY------------------ 114
            G+L    GL ++EL   +H  +V  G  S  F    L N Y                  
Sbjct: 175 SGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTE 234

Query: 115 --LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELI 172
             +VS NA++ GF +N L+  A  LF    G G+ P+A T + V +    L      + +
Sbjct: 235 VNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEV 294

Query: 173 HGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFRE--MECKDVISWTRMMGLFVDFE 230
            G  ++LG+  +  V  +++DM S    L  A  IF    + C+    W  M+  ++   
Sbjct: 295 SGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSG 354

Query: 231 YAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ-SELRLS 289
           +   AL++F +M ++ I  D     ++ +  A L  L  GK++HA+ +  GL+ + + +S
Sbjct: 355 FNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSIS 414

Query: 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD 349
           N++   Y+KCG L+  R VFN++ ++ L+SWT++++ Y Q     +A+  F  MR E   
Sbjct: 415 NAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGI- 473

Query: 350 SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYI 409
           + +  T  S+L +   L  LE   Q+HGI  + G    + +++ L+  Y+KCG +  A  
Sbjct: 474 APNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKK 533

Query: 410 VFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAG 469
           VF  +    D VSW  II G+  +G  + AL L+ +M + G  P++ T+L +L AC H G
Sbjct: 534 VFNRISN-ADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGG 592

Query: 470 LTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRAL 529
           L  +GL  F  M +   + P  EHY C+VDLL+R G L+DA     ++       +W+ L
Sbjct: 593 LVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAMEFISRMPVEPNEMVWQTL 652

Query: 530 LSGCVLH---------------------------------VGRFQDAEALRSGSQKKGII 556
           L  C +H                                  G ++D  +LR   +++G+ 
Sbjct: 653 LGACRVHGNVELGELAAQKILSFKAENSATYVLLSNTYIESGSYKDGLSLRHVMKEQGVK 712

Query: 557 KIPGISFLN 565
           K PG S+++
Sbjct: 713 KEPGCSWIS 721



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 132/509 (25%), Positives = 255/509 (50%), Gaps = 29/509 (5%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ LL+ Y K  +I+++  +F+ + E NVVSW+ +I G++ N  +  +   F  MM  G+
Sbjct: 209 STALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGV 268

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG------------------ 109
            P++ T +GV  A   L+++  A+ + G  ++ G++S+   G                  
Sbjct: 269 TPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARS 328

Query: 110 LKNPYLVSC------NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
           + N + ++C      NA+++G++ +   ++A+ LF     + +  +  T  +V     AL
Sbjct: 329 IFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAAL 388

Query: 164 GSRALCELIHGLTIKLGLILD-VSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
              +L + +H   IK GL ++ VS++N+V + Y+    L+   ++F  ME +D+ISWT +
Sbjct: 389 KCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSL 448

Query: 223 MGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL 282
           +  +        A++IF  MR   I  +     +++   A L  L+ G+Q+H  +   GL
Sbjct: 449 VTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGL 508

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
             +  + ++++ MY+KCG L  ++ VFN+I+    VSWTAII+G+ Q+G   +AL  F +
Sbjct: 509 DMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDDALQLFRR 568

Query: 343 MRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEA-GFPRYRSVQNCLISSYSKC 401
           M Q   +  +++T + +L A      +E  LQ   +  +  G         C++   S+ 
Sbjct: 569 MVQLGVEP-NAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRV 627

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G+++ A      M    + + W T++    V+G+ E       K+  + +  +S+TY+ +
Sbjct: 628 GHLNDAMEFISRMPVEPNEMVWQTLLGACRVHGNVELGELAAQKIL-SFKAENSATYVLL 686

Query: 462 LNACGHAGLTNDGLVIFNQMIEEN-KVKP 489
            N    +G   DGL + + M E+  K +P
Sbjct: 687 SNTYIESGSYKDGLSLRHVMKEQGVKKEP 715



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/315 (29%), Positives = 153/315 (48%), Gaps = 4/315 (1%)

Query: 153 MLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVN--NSVLDMYSCLMDLDAAIQIFRE 210
           ++ ++R CV        + +HG  +K       S+   N V   YS   D+DAA ++F +
Sbjct: 71  LVDLLRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQ 130

Query: 211 MECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG 270
           M  ++  SWT ++    +     D  + F EM+   I  D  A   ++ +   L  ++ G
Sbjct: 131 MSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELG 190

Query: 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
             +HAQ+V+ G  S   +S +++ MY+K  +++ S  VFN +TE ++VSW A+I+G+  N
Sbjct: 191 NMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSN 250

Query: 331 GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV 390
               +A + F++M  E   + D+ T + +  A G L  +    ++ G A E G      V
Sbjct: 251 DLYLDAFDLFLRMMGEGV-TPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLV 309

Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGFL-RDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
              LI   SKCG++  A  +F       R    WN +I GY  +G  E AL L+ KM + 
Sbjct: 310 GTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQN 369

Query: 450 GEVPDSSTYLSILNA 464
               D  TY S+ NA
Sbjct: 370 DIYLDHYTYCSVFNA 384



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 56/102 (54%), Gaps = 7/102 (6%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D    S L+  Y K G + +A+ +F+ I   + VSW+ +I G++ +G  + +++ F  M
Sbjct: 510 MDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDDALQLFRRM 569

Query: 63  MLSGLLPNSFTMVGVLVAAA-------GLQNLELARSIHGLM 97
           +  G+ PN+ T + VL A +       GLQ  +L +  +GL+
Sbjct: 570 VQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLV 611


>gi|297834550|ref|XP_002885157.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330997|gb|EFH61416.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 655

 Score =  266 bits (679), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 185/627 (29%), Positives = 312/627 (49%), Gaps = 74/627 (11%)

Query: 7   NSSKLLSN----YFKSGKIKEAENLFDEIPEK--NVVSWSIVIHGYSINGFHEKSMKAFS 60
           +SS +L N    Y    +++ A ++FDEIP    N ++W ++I  Y  NGF EK++  + 
Sbjct: 33  SSSTVLVNLTRLYASCNEVELARHVFDEIPHPRINPIAWDLMIRAYVSNGFAEKALDLYY 92

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL-------------- 106
            M+ SG+ P  FT   VL A AGL+ +E  + IH  +      +D+              
Sbjct: 93  KMLNSGVRPTKFTYPFVLKACAGLRAIEDGKLIHSHVKCSNFAADMYVCTALVDFYAKCG 152

Query: 107 --------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLF-NFFRGSGLVPNAVTMLTVI 157
                   F+ +    +V+ NA+++GF  +      + LF +  R   L PN  T++ + 
Sbjct: 153 ELDMAIKVFDEMPKRDIVAWNAMISGFSLHCCLTDVIGLFLDMRRSDCLSPNLSTIVGMF 212

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
                 G+    + +HG   ++G   D+ V   +LD+Y+    +  A ++F     K+ +
Sbjct: 213 PALGRAGALREGKAVHGYCTRMGFSNDLVVKTGILDVYAKSKCIIYARRVFDSDFKKNEV 272

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAIL------GDLKRGK 271
           +W+ M+G +V+ E   +A ++F +M    ++   +A++  +++  IL      GDL  G+
Sbjct: 273 TWSAMIGGYVENEMIKEAGEVFLQM----LVNADMAMVTPVAIGLILMGCARFGDLSGGR 328

Query: 272 QLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNG 331
            +H   +  G   +L + N++I+ Y+K G L  +   F +I  K +VS+ ++ISG V+N 
Sbjct: 329 CVHCYAIKAGFILDLTVGNTVISFYAKYGSLCDAFRQFTEIGLKDIVSYNSLISGCVENC 388

Query: 332 CAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ 391
            A E+   F +M+       D  TL+ ILTA   LAAL      HG     G+    S+ 
Sbjct: 389 RAEESFRLFHQMKSSGIRP-DITTLLGILTACSNLAALGHGSSCHGYCVVNGYAVNTSIC 447

Query: 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE 451
           N L+  Y+KCG + +A  VF+ M   RD+VSWNT+++G+G++G G+ AL+L++ M +TG 
Sbjct: 448 NALMDMYTKCGKLYVAKRVFDTM-HKRDIVSWNTMLFGFGIHGLGKEALSLFNSMQDTGV 506

Query: 452 VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEEN-KVKPSQEHYGCVVDLLARAGCLSDA 510
            PD  T L+IL+AC H+GL ++G  +FN M   +  V P  +HY C+ DLLARAG L +A
Sbjct: 507 HPDEVTLLAILSACSHSGLVDEGKQLFNSMSRGDFNVIPRLDHYNCMTDLLARAGYLDEA 566

Query: 511 SGLAGKLLEGMGPNIWRALLSGCVLH--------------------------------VG 538
                K+       +   LLS C  +                                  
Sbjct: 567 YDFVNKMPFEPDIRVLGTLLSACWTYKNVELGNEVSKKMQSLGETTESLVLLSNTYSAAE 626

Query: 539 RFQDAEALRSGSQKKGIIKIPGISFLN 565
           R++DA  +R   +K G++K PG S+++
Sbjct: 627 RWEDAAKIRMTQKKSGLLKTPGYSWVD 653



 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 127/485 (26%), Positives = 229/485 (47%), Gaps = 30/485 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + L+  Y K G++  A  +FDE+P++++V+W+ +I G+S++      +  F  M 
Sbjct: 137 DMYVCTALVDFYAKCGELDMAIKVFDEMPKRDIVAWNAMISGFSLHCCLTDVIGLFLDMR 196

Query: 64  LSGLL-PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPYL----- 115
            S  L PN  T+VG+  A      L   +++HG   + G  +DL    G+ + Y      
Sbjct: 197 RSDCLSPNLSTIVGMFPALGRAGALREGKAVHGYCTRMGFSNDLVVKTGILDVYAKSKCI 256

Query: 116 ---------------VSCNAIVAGFINNKLFQQA--VLLFNFFRGSGLVPNAVTMLTVIR 158
                          V+ +A++ G++ N++ ++A  V L         +   V +  ++ 
Sbjct: 257 IYARRVFDSDFKKNEVTWSAMIGGYVENEMIKEAGEVFLQMLVNADMAMVTPVAIGLILM 316

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
           GC   G  +    +H   IK G ILD++V N+V+  Y+    L  A + F E+  KD++S
Sbjct: 317 GCARFGDLSGGRCVHCYAIKAGFILDLTVGNTVISFYAKYGSLCDAFRQFTEIGLKDIVS 376

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           +  ++   V+   A ++ ++F +M+ S I  D   LL +++  + L  L  G   H   V
Sbjct: 377 YNSLISGCVENCRAEESFRLFHQMKSSGIRPDITTLLGILTACSNLAALGHGSSCHGYCV 436

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
           + G      + N+++ MY+KCG L  ++ VF+ + ++ +VSW  ++ G+  +G  +EAL+
Sbjct: 437 VNGYAVNTSICNALMDMYTKCGKLYVAKRVFDTMHKRDIVSWNTMLFGFGIHGLGKEALS 496

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGF---PRYRSVQNCLI 395
            F  M Q+     D +TL++IL+A      ++   QL        F   PR     NC+ 
Sbjct: 497 LFNSM-QDTGVHPDEVTLLAILSACSHSGLVDEGKQLFNSMSRGDFNVIPRLDH-YNCMT 554

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
              ++ G +D AY    +M F  D+    T++       + E    +  KM   GE  +S
Sbjct: 555 DLLARAGYLDEAYDFVNKMPFEPDIRVLGTLLSACWTYKNVELGNEVSKKMQSLGETTES 614

Query: 456 STYLS 460
              LS
Sbjct: 615 LVLLS 619


>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  266 bits (679), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 175/609 (28%), Positives = 291/609 (47%), Gaps = 60/609 (9%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTM 74
           Y K   I  A  LFD++ ++N  SW+++I G + NG      + F  M   G+ P+ F  
Sbjct: 115 YSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAY 174

Query: 75  VGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY------------------ 114
            G+L    GL ++EL   +H  +V  G  S  F    L N Y                  
Sbjct: 175 SGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTE 234

Query: 115 --LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELI 172
             +VS NA++ GF +N L+  A  LF    G G+ P+A T + V +    L      + +
Sbjct: 235 VNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEV 294

Query: 173 HGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFRE--MECKDVISWTRMMGLFVDFE 230
            G  ++LG+  +  V  +++DM S    L  A  IF    + C+    W  M+  ++   
Sbjct: 295 SGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSG 354

Query: 231 YAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ-SELRLS 289
           +   AL++F +M ++ I  D     ++ +  A L  L  GK++HA+ +  GL+ + + +S
Sbjct: 355 FNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSIS 414

Query: 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD 349
           N++   Y+KCG L+  R VFN++ ++ L+SWT++++ Y Q     +A+  F  MR E   
Sbjct: 415 NAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGI- 473

Query: 350 SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYI 409
           + +  T  S+L +   L  LE   Q+HGI  + G    + +++ L+  Y+KCG +  A  
Sbjct: 474 APNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKK 533

Query: 410 VFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAG 469
           VF  +    D VSW  II G+  +G  + AL L+ +M + G  P++ T+L +L AC H G
Sbjct: 534 VFNRISN-ADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGG 592

Query: 470 LTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRAL 529
           L  +GL  F  M +   + P  EHY C+VDLL+R G L+DA     ++       +W+ L
Sbjct: 593 LVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAMEFISRMPVEPNEMVWQTL 652

Query: 530 LSGCVLH---------------------------------VGRFQDAEALRSGSQKKGII 556
           L  C +H                                  G ++D  +LR   +++G+ 
Sbjct: 653 LGACRVHGNVELGELAAQKILSFKAENSATYVLLSNTYIESGSYKDGLSLRHLMKEQGVK 712

Query: 557 KIPGISFLN 565
           K PG S+++
Sbjct: 713 KEPGCSWIS 721



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 132/509 (25%), Positives = 255/509 (50%), Gaps = 29/509 (5%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ LL+ Y K  +I+++  +F+ + E NVVSW+ +I G++ N  +  +   F  MM  G+
Sbjct: 209 STALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGV 268

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG------------------ 109
            P++ T +GV  A   L+++  A+ + G  ++ G++S+   G                  
Sbjct: 269 TPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARS 328

Query: 110 LKNPYLVSC------NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
           + N + ++C      NA+++G++ +   ++A+ LF     + +  +  T  +V     AL
Sbjct: 329 IFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAAL 388

Query: 164 GSRALCELIHGLTIKLGLILD-VSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
              +L + +H   IK GL ++ VS++N+V + Y+    L+   ++F  ME +D+ISWT +
Sbjct: 389 KCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSL 448

Query: 223 MGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL 282
           +  +        A++IF  MR   I  +     +++   A L  L+ G+Q+H  +   GL
Sbjct: 449 VTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGL 508

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
             +  + ++++ MY+KCG L  ++ VFN+I+    VSWTAII+G+ Q+G   +AL  F +
Sbjct: 509 DMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDDALQLFRR 568

Query: 343 MRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEA-GFPRYRSVQNCLISSYSKC 401
           M Q   +  +++T + +L A      +E  LQ   +  +  G         C++   S+ 
Sbjct: 569 MVQLGVEP-NAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRV 627

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G+++ A      M    + + W T++    V+G+ E       K+  + +  +S+TY+ +
Sbjct: 628 GHLNDAMEFISRMPVEPNEMVWQTLLGACRVHGNVELGELAAQKIL-SFKAENSATYVLL 686

Query: 462 LNACGHAGLTNDGLVIFNQMIEEN-KVKP 489
            N    +G   DGL + + M E+  K +P
Sbjct: 687 SNTYIESGSYKDGLSLRHLMKEQGVKKEP 715



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/315 (29%), Positives = 153/315 (48%), Gaps = 4/315 (1%)

Query: 153 MLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVN--NSVLDMYSCLMDLDAAIQIFRE 210
           ++ ++R CV        + +HG  +K       S+   N V   YS   D+DAA ++F +
Sbjct: 71  LVDLLRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQ 130

Query: 211 MECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG 270
           M  ++  SWT ++    +     D  + F EM+   I  D  A   ++ +   L  ++ G
Sbjct: 131 MSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELG 190

Query: 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
             +HAQ+V+ G  S   +S +++ MY+K  +++ S  VFN +TE ++VSW A+I+G+  N
Sbjct: 191 NMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSN 250

Query: 331 GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV 390
               +A + F++M  E   + D+ T + +  A G L  +    ++ G A E G      V
Sbjct: 251 DLYLDAFDLFLRMMGEGV-TPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLV 309

Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGFL-RDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
              LI   SKCG++  A  +F       R    WN +I GY  +G  E AL L+ KM + 
Sbjct: 310 GTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQN 369

Query: 450 GEVPDSSTYLSILNA 464
               D  TY S+ NA
Sbjct: 370 DIYLDHYTYCSVFNA 384



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 56/102 (54%), Gaps = 7/102 (6%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D    S L+  Y K G + +A+ +F+ I   + VSW+ +I G++ +G  + +++ F  M
Sbjct: 510 MDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDDALQLFRRM 569

Query: 63  MLSGLLPNSFTMVGVLVAAA-------GLQNLELARSIHGLM 97
           +  G+ PN+ T + VL A +       GLQ  +L +  +GL+
Sbjct: 570 VQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLV 611


>gi|356501823|ref|XP_003519723.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 727

 Score =  265 bits (678), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 173/612 (28%), Positives = 306/612 (50%), Gaps = 56/612 (9%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           +S+L++ Y   G ++ A   F  +P K +++W+ ++ G    G   K++  +  M+  G+
Sbjct: 70  ASQLVNVYVNFGSLQHAFLTFRALPHKPIIAWNAILRGLVAVGHFTKAIHFYHSMLQHGV 129

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLM------------------VKFGLESD---L 106
            P+++T   VL A + L  L+L R +H  M                   K G   D   +
Sbjct: 130 TPDNYTYPLVLKACSSLHALQLGRWVHETMHGKTKANVYVQCAVIDMFAKCGSVEDARRM 189

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           FE + +  L S  A++ G + N    +A+LLF   R  GL+P++V + +++  C  L + 
Sbjct: 190 FEEMPDRDLASWTALICGTMWNGECLEALLLFRKMRSEGLMPDSVIVASILPACGRLEAV 249

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
            L   +    ++ G   D+ V+N+V+DMY    D   A ++F  M   DV+SW+ ++  +
Sbjct: 250 KLGMALQVCAVRSGFESDLYVSNAVIDMYCKCGDPLEAHRVFSHMVYSDVVSWSTLIAGY 309

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
                  ++ K++  M    +  + +   +++     L  LK+GK++H  V+  GL S++
Sbjct: 310 SQNCLYQESYKLYIGMINVGLATNAIVATSVLPALGKLELLKQGKEMHNFVLKEGLMSDV 369

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            + +++I MY+ CG +  + S+F   ++K ++ W ++I GY   G    A   F ++   
Sbjct: 370 VVGSALIVMYANCGSIKEAESIFECTSDKDIMVWNSMIVGYNLVGDFESAFFTFRRIWGA 429

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
           +    + IT+VSIL    ++ AL    ++HG   ++G     SV N LI  YSKCG ++L
Sbjct: 430 EHRP-NFITVVSILPICTQMGALRQGKEIHGYVTKSGLGLNVSVGNSLIDMYSKCGFLEL 488

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
              VF++M  +R+V ++NT+I   G +G GE  LA Y +M E G  P+  T++S+L+AC 
Sbjct: 489 GEKVFKQM-MVRNVTTYNTMISACGSHGQGEKGLAFYEQMKEEGNRPNKVTFISLLSACS 547

Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIW 526
           HAGL + G +++N MI +  ++P+ EHY C+VDL+ RAG L  A     ++      N++
Sbjct: 548 HAGLLDRGWLLYNSMINDYGIEPNMEHYSCMVDLIGRAGDLDGAYKFITRMPMTPDANVF 607

Query: 527 RALLSGCVLHV---------------------------------GRFQDAEALRSGSQKK 553
            +LL  C LH                                   R++D   +RS  + K
Sbjct: 608 GSLLGACRLHNKVELTELLAERILQLKADDSGHYVLLSNLYASGKRWEDMSKVRSMIKDK 667

Query: 554 GIIKIPGISFLN 565
           G+ K PG S++ 
Sbjct: 668 GLEKKPGSSWIQ 679



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 111/443 (25%), Positives = 213/443 (48%), Gaps = 36/443 (8%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y    ++  + K G +++A  +F+E+P++++ SW+ +I G   NG   +++  F  M   
Sbjct: 168 YVQCAVIDMFAKCGSVEDARRMFEEMPDRDLASWTALICGTMWNGECLEALLLFRKMRSE 227

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL------------------- 106
           GL+P+S  +  +L A   L+ ++L  ++    V+ G ESDL                   
Sbjct: 228 GLMPDSVIVASILPACGRLEAVKLGMALQVCAVRSGFESDLYVSNAVIDMYCKCGDPLEA 287

Query: 107 ---FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
              F  +    +VS + ++AG+  N L+Q++  L+      GL  NA+   +V+    AL
Sbjct: 288 HRVFSHMVYSDVVSWSTLIAGYSQNCLYQESYKLYIGMINVGLATNAIVATSVLP---AL 344

Query: 164 GSRALCEL---IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
           G   L +    +H   +K GL+ DV V ++++ MY+    +  A  IF     KD++ W 
Sbjct: 345 GKLELLKQGKEMHNFVLKEGLMSDVVVGSALIVMYANCGSIKEAESIFECTSDKDIMVWN 404

Query: 221 RMM---GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
            M+    L  DFE    A   FR +  +    + + +++++ +   +G L++GK++H  V
Sbjct: 405 SMIVGYNLVGDFE---SAFFTFRRIWGAEHRPNFITVVSILPICTQMGALRQGKEIHGYV 461

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
              GL   + + NS+I MYSKCG L+    VF Q+  +++ ++  +IS    +G   + L
Sbjct: 462 TKSGLGLNVSVGNSLIDMYSKCGFLELGEKVFKQMMVRNVTTYNTMISACGSHGQGEKGL 521

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLH-GIAFEAGFPRYRSVQNCLIS 396
             + +M++E  +  + +T +S+L+A      L+    L+  +  + G        +C++ 
Sbjct: 522 AFYEQMKEEG-NRPNKVTFISLLSACSHAGLLDRGWLLYNSMINDYGIEPNMEHYSCMVD 580

Query: 397 SYSKCGNVDLAYIVFEEMGFLRD 419
              + G++D AY     M    D
Sbjct: 581 LIGRAGDLDGAYKFITRMPMTPD 603



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 101/390 (25%), Positives = 182/390 (46%), Gaps = 32/390 (8%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y S+ ++  Y K G   EA  +F  +   +VVSWS +I GYS N  +++S K +  M+
Sbjct: 267 DLYVSNAVIDMYCKCGDPLEAHRVFSHMVYSDVVSWSTLIAGYSQNCLYQESYKLYIGMI 326

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
             GL  N+     VL A   L+ L+  + +H  ++K GL SD                  
Sbjct: 327 NVGLATNAIVATSVLPALGKLELLKQGKEMHNFVLKEGLMSDVVVGSALIVMYANCGSIK 386

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +FE   +  ++  N+++ G+     F+ A   F    G+   PN +T+++++  C 
Sbjct: 387 EAESIFECTSDKDIMVWNSMIVGYNLVGDFESAFFTFRRIWGAEHRPNFITVVSILPICT 446

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            +G+    + IHG   K GL L+VSV NS++DMYS    L+   ++F++M  ++V ++  
Sbjct: 447 QMGALRQGKEIHGYVTKSGLGLNVSVGNSLIDMYSKCGFLELGEKVFKQMMVRNVTTYNT 506

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG- 280
           M+            L  + +M++     + V  ++L+S  +  G L RG  L+  ++   
Sbjct: 507 MISACGSHGQGEKGLAFYEQMKEEGNRPNKVTFISLLSACSHAGLLDRGWLLYNSMINDY 566

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA---REAL 337
           G++  +   + ++ +  + GDLD +   +  IT   +    A + G +   C    +  L
Sbjct: 567 GIEPNMEHYSCMVDLIGRAGDLDGA---YKFITRMPMTP-DANVFGSLLGACRLHNKVEL 622

Query: 338 NQFIKMR--QEKTDSVDSITLVSILTASGE 365
            + +  R  Q K D      L+S L ASG+
Sbjct: 623 TELLAERILQLKADDSGHYVLLSNLYASGK 652


>gi|449523019|ref|XP_004168522.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17210-like [Cucumis sativus]
          Length = 747

 Score =  265 bits (678), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 161/546 (29%), Positives = 288/546 (52%), Gaps = 32/546 (5%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTM 74
           Y K G +  A+  FD    K+ VSW++++HG   NG     +  F     +   PN  ++
Sbjct: 92  YMKYGDLDSAQRAFDSTKNKDSVSWNVMVHGNFSNGSIMAGLCWFIKGRFAHFQPNISSL 151

Query: 75  VGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYL------------------- 115
           + V+ A   L+      + HG + + G  + L   ++N  L                   
Sbjct: 152 LLVIQAFRELKIYSQGFAFHGYIFRSGFSAIL--SVQNSLLSLYAEVHMYFAYKLFGEMS 209

Query: 116 -----VSCNAIVAGFINNKLFQQAVLLF-NFFRGSGLVPNAVTMLTVIRGCVALGSRALC 169
                VS + ++ GF+     +Q  L+F N    +G+ P+ VT+++V++ C  L   +L 
Sbjct: 210 VRNDVVSWSVMIGGFVQIGEDEQGFLMFRNMVTEAGIPPDGVTVVSVLKACTNLKDISLG 269

Query: 170 ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDF 229
            ++HGL I  GL  D+ V NS++DMYS   ++ +A + F+E+  K++ISW  M+  ++  
Sbjct: 270 TMVHGLVIFRGLEDDLFVGNSLIDMYSKCFNVHSAFKAFKEIPEKNIISWNLMLSAYILN 329

Query: 230 EYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLS 289
           E   +AL +   M +     D V L N++ +     D  + + +H  ++  G +S   L 
Sbjct: 330 ESHLEALALLGTMVREGAEKDEVTLANVLQIAKHFLDSLKCRSVHGVIIRKGYESNELLL 389

Query: 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD 349
           NS+I  Y+KC  ++ +R VF+ + +K +V+W+ +I+G+ +NG   EA++ F +M +E   
Sbjct: 390 NSVIDAYAKCNLVELARMVFDGMNKKDVVAWSTMIAGFARNGKPDEAISVFKQMNEEVIP 449

Query: 350 SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYI 409
             +++++++++ A    A L      HGIA   G     ++   +I  YSKCG+++ +  
Sbjct: 450 --NNVSIMNLMEACAVSAELRQSKWAHGIAVRRGLASEVAIGTSIIDMYSKCGDIEASIR 507

Query: 410 VFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAG 469
            F ++   ++VV W+ +I  + +NG    AL L+ K+ + G  P++ T LS+L+AC H G
Sbjct: 508 AFNQIP-QKNVVCWSAMISAFRINGLAHEALMLFEKIKQNGTKPNAVTALSLLSACSHGG 566

Query: 470 LTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM--GPNIWR 527
           L  +GL  F  M++++ ++P  EHY C+VD+L+RAG  ++A  L  KL + M  G +IW 
Sbjct: 567 LIEEGLSFFTSMVQKHGIEPGLEHYSCIVDMLSRAGKFNEALELIEKLPKEMEAGASIWG 626

Query: 528 ALLSGC 533
            LLS C
Sbjct: 627 TLLSSC 632



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 125/449 (27%), Positives = 228/449 (50%), Gaps = 30/449 (6%)

Query: 43  IHGYSINGFHEKSMKAFSHMMLSGL-LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG 101
           I   S +G  +++++ +  + +SG  L +++ +  +L A +   +  L  ++HG ++K G
Sbjct: 19  IKDASYSGNWQEALQLYHEIRISGAQLSDTWVLPSILKACSN-TSFNLGTAMHGCLIKQG 77

Query: 102 LES----------------DL------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFN 139
            +S                DL      F+  KN   VS N +V G  +N      +  F 
Sbjct: 78  CQSSTSIANSTIDFYMKYGDLDSAQRAFDSTKNKDSVSWNVMVHGNFSNGSIMAGLCWFI 137

Query: 140 FFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLM 199
             R +   PN  ++L VI+    L   +     HG   + G    +SV NS+L +Y+  +
Sbjct: 138 KGRFAHFQPNISSLLLVIQAFRELKIYSQGFAFHGYIFRSGFSAILSVQNSLLSLYA-EV 196

Query: 200 DLDAAIQIFREMECK-DVISWTRMMGLFVDFEYAGDALKIFREM-RKSRIICDTVALLNL 257
            +  A ++F EM  + DV+SW+ M+G FV          +FR M  ++ I  D V ++++
Sbjct: 197 HMYFAYKLFGEMSVRNDVVSWSVMIGGFVQIGEDEQGFLMFRNMVTEAGIPPDGVTVVSV 256

Query: 258 ISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSL 317
           +     L D+  G  +H  V+  GL+ +L + NS+I MYSKC ++ S+   F +I EK++
Sbjct: 257 LKACTNLKDISLGTMVHGLVIFRGLEDDLFVGNSLIDMYSKCFNVHSAFKAFKEIPEKNI 316

Query: 318 VSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHG 377
           +SW  ++S Y+ N    EAL     M +E  +  D +TL ++L  +        C  +HG
Sbjct: 317 ISWNLMLSAYILNESHLEALALLGTMVREGAEK-DEVTLANVLQIAKHFLDSLKCRSVHG 375

Query: 378 IAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGE 437
           +    G+     + N +I +Y+KC  V+LA +VF+ M   +DVV+W+T+I G+  NG  +
Sbjct: 376 VIIRKGYESNELLLNSVIDAYAKCNLVELARMVFDGMN-KKDVVAWSTMIAGFARNGKPD 434

Query: 438 TALALYHKMTETGEVPDSSTYLSILNACG 466
            A++++ +M E   +P++ + ++++ AC 
Sbjct: 435 EAISVFKQMNEE-VIPNNVSIMNLMEACA 462



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/335 (23%), Positives = 166/335 (49%), Gaps = 24/335 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L+  Y K   +  A   F EIPEKN++SW++++  Y +N  H +++     M+
Sbjct: 284 DLFVGNSLIDMYSKCFNVHSAFKAFKEIPEKNIISWNLMLSAYILNESHLEALALLGTMV 343

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
             G   +  T+  VL  A    +    RS+HG++++ G ES+                  
Sbjct: 344 REGAEKDEVTLANVLQIAKHFLDSLKCRSVHGVIIRKGYESNELLLNSVIDAYAKCNLVE 403

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +F+G+    +V+ + ++AGF  N    +A+ +F       ++PN V+++ ++  C 
Sbjct: 404 LARMVFDGMNKKDVVAWSTMIAGFARNGKPDEAISVFKQMN-EEVIPNNVSIMNLMEACA 462

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
                   +  HG+ ++ GL  +V++  S++DMYS   D++A+I+ F ++  K+V+ W+ 
Sbjct: 463 VSAELRQSKWAHGIAVRRGLASEVAIGTSIIDMYSKCGDIEASIRAFNQIPQKNVVCWSA 522

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG- 280
           M+  F     A +AL +F +++++    + V  L+L+S  +  G ++ G      +V   
Sbjct: 523 MISAFRINGLAHEALMLFEKIKQNGTKPNAVTALSLLSACSHGGLIEEGLSFFTSMVQKH 582

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK 315
           G++  L   + I+ M S+ G  + +  +  ++ ++
Sbjct: 583 GIEPGLEHYSCIVDMLSRAGKFNEALELIEKLPKE 617



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 160/339 (47%), Gaps = 5/339 (1%)

Query: 131 FQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNS 190
           +Q+A+ L++  R SG   +   +L  I    +  S  L   +HG  IK G     S+ NS
Sbjct: 28  WQEALQLYHEIRISGAQLSDTWVLPSILKACSNTSFNLGTAMHGCLIKQGCQSSTSIANS 87

Query: 191 VLDMYSCLMDLDAAIQIFREMECKDVISWTRMM-GLFVDFEYAGDALKIFREMRKSRIIC 249
            +D Y    DLD+A + F   + KD +SW  M+ G F +       L  F + R +    
Sbjct: 88  TIDFYMKYGDLDSAQRAFDSTKNKDSVSWNVMVHGNFSNGSIMA-GLCWFIKGRFAHFQP 146

Query: 250 DTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVF 309
           +  +LL +I     L    +G   H  +   G  + L + NS++++Y++   +  +  +F
Sbjct: 147 NISSLLLVIQAFRELKIYSQGFAFHGYIFRSGFSAILSVQNSLLSLYAEV-HMYFAYKLF 205

Query: 310 NQITEKS-LVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAA 368
            +++ ++ +VSW+ +I G+VQ G   +    F  M  E     D +T+VS+L A   L  
Sbjct: 206 GEMSVRNDVVSWSVMIGGFVQIGEDEQGFLMFRNMVTEAGIPPDGVTVVSVLKACTNLKD 265

Query: 369 LEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIY 428
           + +   +HG+    G      V N LI  YSKC NV  A+  F+E+   ++++SWN ++ 
Sbjct: 266 ISLGTMVHGLVIFRGLEDDLFVGNSLIDMYSKCFNVHSAFKAFKEIP-EKNIISWNLMLS 324

Query: 429 GYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
            Y +N     ALAL   M   G   D  T  ++L    H
Sbjct: 325 AYILNESHLEALALLGTMVREGAEKDEVTLANVLQIAKH 363



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/262 (33%), Positives = 128/262 (48%), Gaps = 15/262 (5%)

Query: 228 DFEYAG---DALKIFREMRKSRI-ICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
           D  Y+G   +AL+++ E+R S   + DT  L +++   +       G  +H  ++  G Q
Sbjct: 21  DASYSGNWQEALQLYHEIRISGAQLSDTWVLPSILKACSNT-SFNLGTAMHGCLIKQGCQ 79

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
           S   ++NS I  Y K GDLDS++  F+    K  VSW  ++ G   NG     L  FIK 
Sbjct: 80  SSTSIANSTIDFYMKYGDLDSAQRAFDSTKNKDSVSWNVMVHGNFSNGSIMAGLCWFIKG 139

Query: 344 R-QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
           R      ++ S+ LV  + A  EL         HG  F +GF    SVQN L+S Y++  
Sbjct: 140 RFAHFQPNISSLLLV--IQAFRELKIYSQGFAFHGYIFRSGFSAILSVQNSLLSLYAEV- 196

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM-TETGEVPDSSTYLSI 461
           ++  AY +F EM    DVVSW+ +I G+   G  E    ++  M TE G  PD  T +S+
Sbjct: 197 HMYFAYKLFGEMSVRNDVVSWSVMIGGFVQIGEDEQGFLMFRNMVTEAGIPPDGVTVVSV 256

Query: 462 LNACGH-----AGLTNDGLVIF 478
           L AC +      G    GLVIF
Sbjct: 257 LKACTNLKDISLGTMVHGLVIF 278


>gi|224122892|ref|XP_002318942.1| predicted protein [Populus trichocarpa]
 gi|222857318|gb|EEE94865.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  265 bits (678), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 177/583 (30%), Positives = 303/583 (51%), Gaps = 45/583 (7%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKS--MKAFSHMM 63
           Y ++ L+  Y K G +  A+ +F+ +  KNVVS++ +IHG S NG    +  ++ F  M+
Sbjct: 44  YLANNLIKFYAKCGHLHGAKLVFENLKHKNVVSYNCLIHGLSHNGSKGSNFVLELFRRMI 103

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLEL-----ARSIHGLMVKFGLESDLFEG--LKNPY-- 114
            + +LP++ T  GV  AAA    L L     AR +H L +K     D+F G  L N Y  
Sbjct: 104 ANNILPDAHTFPGVFTAAA----LNLGCNFDARQVHVLGIKTASIDDVFVGSSLVNFYCK 159

Query: 115 ------------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTV 156
                             LVS   +++G+ + ++ ++A+ +F   R      N     +V
Sbjct: 160 VGCVFEARKLFDRMPERNLVSWTTMISGYASKQMAKEALGVFGLMRLVEGNLNEFVFTSV 219

Query: 157 IRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
           +   V        + +H + +K G++  VSV N+++ MY+   +L+ ++ +F     K+ 
Sbjct: 220 LSALVCPEFVDSGKQVHCVVVKNGVLEFVSVLNALVTMYAKCGNLNYSLMLFEMCSDKNA 279

Query: 217 ISWTRMMGLFVDFEYAGD---ALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQL 273
           I+W+    L   +  AGD   ALK+F +M  +  +     L+ ++   + +  ++ GKQ 
Sbjct: 280 ITWS---ALITGYSQAGDSHKALKLFSKMHYAGFVPSEFTLVGVLKACSDVAAIEEGKQT 336

Query: 274 HAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA 333
           H  ++  G ++++  + +++ MY+K G    +R  F+ + E  LV WT+II+GYVQNG  
Sbjct: 337 HGYLLKSGYETQIYTATALVDMYAKFGFTGDARKGFDFLLEPDLVLWTSIIAGYVQNGKN 396

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC 393
            EAL+ + +M+  K    + +T+ S+L A   LAALE   Q+H    + G     S+++ 
Sbjct: 397 EEALSMYGRMQMRKILP-NELTMASVLKACSNLAALEQGKQIHARTIKYGLGPELSIRSA 455

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           L + Y+KCG+++   ++F  M   RD+VSWN +I G   NGHG  AL L+ +M   G  P
Sbjct: 456 LSTMYAKCGSLEEGVLIFRRM-LQRDIVSWNAMISGLSQNGHGREALELFEEMRLEGTKP 514

Query: 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL 513
           D  T++++L+AC H G+   G   FN M +E  + P  EHY C+VD+L+RAG L++A   
Sbjct: 515 DHITFVTVLSACSHMGIVKRGWAYFNMMFDEFCLVPRVEHYACMVDVLSRAGKLNEAKEF 574

Query: 514 AGKLLEGMGPNIWRALLSGCVLH----VGRFQDAEALRSGSQK 552
               +   G  +WR LL  C  H    +G +   + +  GS++
Sbjct: 575 IESAIIDHGMCLWRILLPACRNHCNYELGAYAGEKLMELGSRE 617



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 131/519 (25%), Positives = 243/519 (46%), Gaps = 35/519 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  S L++ Y K G + EA  LFD +PE+N+VSW+ +I GY+     ++++  F  M 
Sbjct: 146 DVFVGSSLVNFYCKVGCVFEARKLFDRMPERNLVSWTTMISGYASKQMAKEALGVFGLMR 205

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL--------------------- 102
           L     N F    VL A    + ++  + +H ++VK G+                     
Sbjct: 206 LVEGNLNEFVFTSVLSALVCPEFVDSGKQVHCVVVKNGVLEFVSVLNALVTMYAKCGNLN 265

Query: 103 -ESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               LFE   +   ++ +A++ G+       +A+ LF+    +G VP+  T++ V++ C 
Sbjct: 266 YSLMLFEMCSDKNAITWSALITGYSQAGDSHKALKLFSKMHYAGFVPSEFTLVGVLKACS 325

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            + +    +  HG  +K G    +    +++DMY+       A + F  +   D++ WT 
Sbjct: 326 DVAAIEEGKQTHGYLLKSGYETQIYTATALVDMYAKFGFTGDARKGFDFLLEPDLVLWTS 385

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++  +V      +AL ++  M+  +I+ + + + +++   + L  L++GKQ+HA+ +  G
Sbjct: 386 IIAGYVQNGKNEEALSMYGRMQMRKILPNELTMASVLKACSNLAALEQGKQIHARTIKYG 445

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           L  EL + +++  MY+KCG L+    +F ++ ++ +VSW A+ISG  QNG  REAL  F 
Sbjct: 446 LGPELSIRSALSTMYAKCGSLEEGVLIFRRMLQRDIVSWNAMISGLSQNGHGREALELFE 505

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG--FPRYRSVQNCLISSYS 399
           +MR E T   D IT V++L+A   +  ++       + F+     PR      C++   S
Sbjct: 506 EMRLEGTKP-DHITFVTVLSACSHMGIVKRGWAYFNMMFDEFCLVPRVEHYA-CMVDVLS 563

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALY--HKMTETGEVPDSST 457
           + G ++ A    E       +  W  ++       H    L  Y   K+ E G   +SS 
Sbjct: 564 RAGKLNEAKEFIESAIIDHGMCLWRILL--PACRNHCNYELGAYAGEKLMELGS-RESSA 620

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGC 496
           Y+ + +     G   D + +   M    KV+  ++  GC
Sbjct: 621 YVLLSSIYTAMGRLADVVRVRRMM----KVRGVRKETGC 655


>gi|297816220|ref|XP_002875993.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321831|gb|EFH52252.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 731

 Score =  265 bits (677), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 176/563 (31%), Positives = 297/563 (52%), Gaps = 40/563 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVS-WSIVIHGYSINGFHEKSMKAFSHM 62
           D Y+ + LLS  FK G I+ A  +FD++PE++ V+ W+ +I G   +G+H  S++ F  M
Sbjct: 116 DVYSWTTLLSASFKLGDIEYAFEVFDKMPERDDVAVWNAMITGCKESGYHGTSIELFREM 175

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG--LESDLFEGLKNPYL----- 115
              G+  + F    VL +     +L+  + +H L++K G  + S +   L   Y      
Sbjct: 176 HKLGVRHDKFGFATVL-SMCYYGSLDFGKQVHSLVIKAGFFVASSVVNALITMYFNCQVV 234

Query: 116 -----------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                            V+ N ++ G    K  ++++L+F     +GL P  +T ++V+ 
Sbjct: 235 VDARLVFEEADVAVRDQVTFNVVIDGLAGFKR-EESLLVFRQMVEAGLRPTDLTFVSVMS 293

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C       +   +HGL+IK G      V+NS + MYS   D  AA ++F  +E KD+I+
Sbjct: 294 SC---SCETMGHQVHGLSIKTGYEEYTLVSNSTMTMYSSFEDFGAAHKVFESLEEKDLIT 350

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           W  M+  +        AL +++ M    +  D     +L++ +    DL   + + A V+
Sbjct: 351 WNTMISGYNQANLGQSALLLYKRMHGIGVKPDEFTFGSLLASSL---DLDALEMVQACVI 407

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
             GL S++ +SN++I+ YSK G +  +  +F    +K+L+SW AIISG+  NG + E L 
Sbjct: 408 KFGLSSKIEISNALISAYSKHGKITKADLIFESSPKKNLISWNAIISGFYHNGFSFEGLE 467

Query: 339 QFIKMRQEKTDSV-DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
           +F  + + +   + D+ TL  +L+   ++++L +  Q H  A   G  +   + N  I+ 
Sbjct: 468 RFSCLLEAEVLIIPDAYTLSILLSICVDISSLMLGEQTHAYALRHGQFKETLIGNAFINM 527

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV-PDSS 456
           YS+CG +  +  VF +M   +D VSWN++I  Y  +G GE+A+  Y  M + G+V PD++
Sbjct: 528 YSQCGTLQKSLAVFHQMSD-KDTVSWNSLISAYARHGKGESAVLTYKTMQDEGKVDPDAA 586

Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK 516
           T  ++L+ACGHAGL  +GL IFN M+E + + P+ +H+ C+VDLL RAG L +A  L  K
Sbjct: 587 TLSAVLSACGHAGLVKEGLEIFNSMVEFHGLIPNVDHFSCLVDLLGRAGHLDEAESLV-K 645

Query: 517 LLE---GMGPNIWRALLSGCVLH 536
           + E   G   ++W AL S C  H
Sbjct: 646 ISEKTIGSRVDVWWALFSACAAH 668



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 128/498 (25%), Positives = 233/498 (46%), Gaps = 47/498 (9%)

Query: 11  LLSNYFKSGKIKEAENLFDE--IPEKNVVSWSIVIHGYSINGF-HEKSMKAFSHMMLSGL 67
           L++ YF    + +A  +F+E  +  ++ V++++VI G  + GF  E+S+  F  M+ +GL
Sbjct: 224 LITMYFNCQVVVDARLVFEEADVAVRDQVTFNVVIDG--LAGFKREESLLVFRQMVEAGL 281

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVK----------------------FGLESD 105
            P   T V V+ + +      +   +HGL +K                      FG    
Sbjct: 282 RPTDLTFVSVMSSCSCET---MGHQVHGLSIKTGYEEYTLVSNSTMTMYSSFEDFGAAHK 338

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +FE L+   L++ N +++G+    L Q A+LL+    G G+ P+  T  +++   + L +
Sbjct: 339 VFESLEEKDLITWNTMISGYNQANLGQSALLLYKRMHGIGVKPDEFTFGSLLASSLDLDA 398

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
               E++    IK GL   + ++N+++  YS    +  A  IF     K++ISW  ++  
Sbjct: 399 ---LEMVQACVIKFGLSSKIEISNALISAYSKHGKITKADLIFESSPKKNLISWNAIISG 455

Query: 226 FVDFEYAGDALKIFREMRKSR--IICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
           F    ++ + L+ F  + ++   II D   L  L+S+   +  L  G+Q HA  +  G  
Sbjct: 456 FYHNGFSFEGLERFSCLLEAEVLIIPDAYTLSILLSICVDISSLMLGEQTHAYALRHGQF 515

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
            E  + N+ I MYS+CG L  S +VF+Q+++K  VSW ++IS Y ++G    A+  +  M
Sbjct: 516 KETLIGNAFINMYSQCGTLQKSLAVFHQMSDKDTVSWNSLISAYARHGKGESAVLTYKTM 575

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHG--IAFEAGFPRYRSVQNCLISSYSKC 401
           + E     D+ TL ++L+A G    ++  L++    + F    P      +CL+    + 
Sbjct: 576 QDEGKVDPDAATLSAVLSACGHAGLVKEGLEIFNSMVEFHGLIPNVDHF-SCLVDLLGRA 634

Query: 402 GNVD----LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALA-LYHKMTETGEVPDSS 456
           G++D    L  I  + +G   DV  W  +        HG+  L  +  ++    E  D S
Sbjct: 635 GHLDEAESLVKISEKTIGSRVDV--WWALF--SACAAHGDLKLGKMVARLLMEKEKNDPS 690

Query: 457 TYLSILNACGHAGLTNDG 474
            Y+ + N    AGL  + 
Sbjct: 691 VYVQLSNIYAGAGLWKEA 708



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 120/265 (45%), Gaps = 35/265 (13%)

Query: 234 DALKIFREMRKS-RIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSI 292
           +ALK+F ++ +   +  D  ++   I+    L D   G Q+H   +  GL     +SN++
Sbjct: 33  NALKLFADVHRCITLRPDQYSVSLAITAAGHLRDTIFGGQVHCYAIRSGLLCHSHVSNTL 92

Query: 293 IAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV- 351
           +++Y++ G+L S +  F +I E  + SWT ++S   + G    A   F KM +    +V 
Sbjct: 93  LSLYARLGNLASLKRKFEEIIEPDVYSWTTLLSASFKLGDIEYAFEVFDKMPERDDVAVW 152

Query: 352 ------------------------------DSITLVSILTASGELAALEICLQLHGIAFE 381
                                         D     ++L+      +L+   Q+H +  +
Sbjct: 153 NAMITGCKESGYHGTSIELFREMHKLGVRHDKFGFATVLSMC-YYGSLDFGKQVHSLVIK 211

Query: 382 AGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGF-LRDVVSWNTIIYGYGVNGHGETAL 440
           AGF    SV N LI+ Y  C  V  A +VFEE    +RD V++N +I G       E +L
Sbjct: 212 AGFFVASSVVNALITMYFNCQVVVDARLVFEEADVAVRDQVTFNVVIDGLA-GFKREESL 270

Query: 441 ALYHKMTETGEVPDSSTYLSILNAC 465
            ++ +M E G  P   T++S++++C
Sbjct: 271 LVFRQMVEAGLRPTDLTFVSVMSSC 295



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 6/178 (3%)

Query: 306 RSVFNQITEKS--LVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTAS 363
           R   + I E S  L++    ++   ++G  R AL  F  + +  T   D  ++   +TA+
Sbjct: 2   RKALSAIGESSTTLLNLNRRLTALTRSGENRNALKLFADVHRCITLRPDQYSVSLAITAA 61

Query: 364 GELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSW 423
           G L       Q+H  A  +G   +  V N L+S Y++ GN+      FEE+    DV SW
Sbjct: 62  GHLRDTIFGGQVHCYAIRSGLLCHSHVSNTLLSLYARLGNLASLKRKFEEI-IEPDVYSW 120

Query: 424 NTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQM 481
            T++      G  E A  ++ KM E  +V   + + +++  C  +G     + +F +M
Sbjct: 121 TTLLSASFKLGDIEYAFEVFDKMPERDDV---AVWNAMITGCKESGYHGTSIELFREM 175


>gi|224098357|ref|XP_002311156.1| predicted protein [Populus trichocarpa]
 gi|222850976|gb|EEE88523.1| predicted protein [Populus trichocarpa]
          Length = 535

 Score =  265 bits (677), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 151/493 (30%), Positives = 258/493 (52%), Gaps = 36/493 (7%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           LF+ +K   LV+ +AI+A F+ +   Q+A+ LF   +  GL  N V +L+ +  C  + S
Sbjct: 45  LFQEIKGRDLVAWSAIIAAFVQSGYPQEALSLFRSMQNEGLQANKVILLSSLPACAEVSS 104

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
             L + +H   +K  + LD+SV  +++ MY+       A+ +F  M CKDV++W  M+  
Sbjct: 105 LKLGKSMHCCAVKANVDLDISVGTALVSMYAKCGFFALALTLFNRMPCKDVVTWNAMING 164

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +        AL++F +++ S +  ++  ++ L+   A+L DL +G  +H +++  G +SE
Sbjct: 165 YAQIGEPFPALEMFHKLQLSELNPNSGTMVGLLPAFALLNDLDQGSCIHGKIIKCGFESE 224

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQI-TEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
             +  ++I MY+KCG L  +  +F++    K  VSW  +I+GY+ +G A +A + F +M+
Sbjct: 225 CHVKTALIDMYAKCGSLSGAEFLFHRTGCRKDEVSWNVMIAGYMHSGHAIDAFSAFCQMK 284

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
            E     + +T+V++L A   L+AL   + LH      GF     V NCLI  Y+KCG +
Sbjct: 285 LENIQP-NIVTIVTVLPAVAHLSALRAGMTLHAYVIRMGFQSKTPVGNCLIDMYAKCGWL 343

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           D +  +F EM   +D VSWN ++ GY V+G G  A+ L+ +M ++    DS +++++L+A
Sbjct: 344 DHSEKIFHEMKN-KDTVSWNVMLAGYAVHGRGSCAIELFSRMQDSEIRLDSFSFINVLSA 402

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C HAGL  +G  IF+ M ++++++P  EHY C+ DLL RAG  ++   L   +       
Sbjct: 403 CRHAGLIGEGRKIFDSMSKQHQLEPDLEHYACMADLLGRAGLFNEVLDLIKSMPMEPDAG 462

Query: 525 IWRALLSGCVLH---------------------------------VGRFQDAEALRSGSQ 551
           +W ALL    +H                                  GR+ D    RS   
Sbjct: 463 VWGALLGASTMHSNVQLAEFALHHLDKLEHKNLTHYAALSNTYARSGRWADVGNTRSKIT 522

Query: 552 KKGIIKIPGISFL 564
           K G+ K PG S++
Sbjct: 523 KTGLRKSPGYSWV 535



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 118/402 (29%), Positives = 208/402 (51%), Gaps = 15/402 (3%)

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           IH    + G+  DV+V   ++ MY+   ++D A Q+F+E++ +D+++W+ ++  FV   Y
Sbjct: 10  IHDFARQQGIDSDVAVATPIMTMYARCGEVDTAKQLFQEIKGRDLVAWSAIIAAFVQSGY 69

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
             +AL +FR M+   +  + V LL+ +   A +  LK GK +H   V   +  ++ +  +
Sbjct: 70  PQEALSLFRSMQNEGLQANKVILLSSLPACAEVSSLKLGKSMHCCAVKANVDLDISVGTA 129

Query: 292 IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
           +++MY+KCG    + ++FN++  K +V+W A+I+GY Q G    AL  F K++  + +  
Sbjct: 130 LVSMYAKCGFFALALTLFNRMPCKDVVTWNAMINGYAQIGEPFPALEMFHKLQLSELNP- 188

Query: 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVF 411
           +S T+V +L A   L  L+    +HG   + GF     V+  LI  Y+KCG++  A  +F
Sbjct: 189 NSGTMVGLLPAFALLNDLDQGSCIHGKIIKCGFESECHVKTALIDMYAKCGSLSGAEFLF 248

Query: 412 EEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH---- 467
              G  +D VSWN +I GY  +GH   A + + +M      P+  T +++L A  H    
Sbjct: 249 HRTGCRKDEVSWNVMIAGYMHSGHAIDAFSAFCQMKLENIQPNIVTIVTVLPAVAHLSAL 308

Query: 468 -AGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIW 526
            AG+T    VI  +M  ++K         C++D+ A+ G L  +  +  + ++      W
Sbjct: 309 RAGMTLHAYVI--RMGFQSKTPVGN----CLIDMYAKCGWLDHSEKIFHE-MKNKDTVSW 361

Query: 527 RALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFLNSTS 568
             +L+G  +H GR   A  L S  Q    I++   SF+N  S
Sbjct: 362 NVMLAGYAVH-GRGSCAIELFSRMQDSE-IRLDSFSFINVLS 401



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 106/378 (28%), Positives = 189/378 (50%), Gaps = 24/378 (6%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ +++ Y + G++  A+ LF EI  +++V+WS +I  +  +G+ ++++  F  M   GL
Sbjct: 26  ATPIMTMYARCGEVDTAKQLFQEIKGRDLVAWSAIIAAFVQSGYPQEALSLFRSMQNEGL 85

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVK----------------------FGLESD 105
             N   ++  L A A + +L+L +S+H   VK                      F L   
Sbjct: 86  QANKVILLSSLPACAEVSSLKLGKSMHCCAVKANVDLDISVGTALVSMYAKCGFFALALT 145

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           LF  +    +V+ NA++ G+        A+ +F+  + S L PN+ TM+ ++     L  
Sbjct: 146 LFNRMPCKDVVTWNAMINGYAQIGEPFPALEMFHKLQLSELNPNSGTMVGLLPAFALLND 205

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC-KDVISWTRMMG 224
                 IHG  IK G   +  V  +++DMY+    L  A  +F    C KD +SW  M+ 
Sbjct: 206 LDQGSCIHGKIIKCGFESECHVKTALIDMYAKCGSLSGAEFLFHRTGCRKDEVSWNVMIA 265

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            ++   +A DA   F +M+   I  + V ++ ++   A L  L+ G  LHA V+  G QS
Sbjct: 266 GYMHSGHAIDAFSAFCQMKLENIQPNIVTIVTVLPAVAHLSALRAGMTLHAYVIRMGFQS 325

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           +  + N +I MY+KCG LD S  +F+++  K  VSW  +++GY  +G    A+  F +M 
Sbjct: 326 KTPVGNCLIDMYAKCGWLDHSEKIFHEMKNKDTVSWNVMLAGYAVHGRGSCAIELFSRM- 384

Query: 345 QEKTDSVDSITLVSILTA 362
           Q+    +DS + +++L+A
Sbjct: 385 QDSEIRLDSFSFINVLSA 402



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/282 (30%), Positives = 151/282 (53%), Gaps = 14/282 (4%)

Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISG 326
           L RG ++H      G+ S++ ++  I+ MY++CG++D+++ +F +I  + LV+W+AII+ 
Sbjct: 4   LGRGTEIHDFARQQGIDSDVAVATPIMTMYARCGEVDTAKQLFQEIKGRDLVAWSAIIAA 63

Query: 327 YVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPR 386
           +VQ+G  +EAL+ F  M+ E   + + + L+S L A  E+++L++   +H  A +A    
Sbjct: 64  FVQSGYPQEALSLFRSMQNEGLQA-NKVILLSSLPACAEVSSLKLGKSMHCCAVKANVDL 122

Query: 387 YRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM 446
             SV   L+S Y+KCG   LA  +F  M   +DVV+WN +I GY   G    AL ++HK+
Sbjct: 123 DISVGTALVSMYAKCGFFALALTLFNRMP-CKDVVTWNAMINGYAQIGEPFPALEMFHKL 181

Query: 447 TETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIE-----ENKVKPSQEHYGCVVDLL 501
             +   P+S T + +L A       + G  I  ++I+     E  VK +      ++D+ 
Sbjct: 182 QLSELNPNSGTMVGLLPAFALLNDLDQGSCIHGKIIKCGFESECHVKTA------LIDMY 235

Query: 502 ARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDA 543
           A+ G LS A  L  +         W  +++G  +H G   DA
Sbjct: 236 AKCGSLSGAEFLFHRTGCRKDEVSWNVMIAG-YMHSGHAIDA 276



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 1/97 (1%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+  Y K G +  +E +F E+  K+ VSW++++ GY+++G    +++ FS M  S +  +
Sbjct: 333 LIDMYAKCGWLDHSEKIFHEMKNKDTVSWNVMLAGYAVHGRGSCAIELFSRMQDSEIRLD 392

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVK-FGLESDL 106
           SF+ + VL A      +   R I   M K   LE DL
Sbjct: 393 SFSFINVLSACRHAGLIGEGRKIFDSMSKQHQLEPDL 429


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  265 bits (677), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 189/609 (31%), Positives = 305/609 (50%), Gaps = 81/609 (13%)

Query: 5   PYNSSKLLSNYFKSGKIKEAENLFDEI-PEKNVVSWSIVIHGYSIN-GFHEKSMKAFSHM 62
           P++ + ++S Y       +A ++   + P  + V W   +   S++ GF E  ++ +  M
Sbjct: 58  PHDPTHIISMYLTFNSPAKALSVLRRLHPSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRM 117

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY------ 114
              G  P+ +T   VL A   + +     S+H ++   G E ++F   GL + Y      
Sbjct: 118 QRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAW 177

Query: 115 -----------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGS-GLVPNAVTMLTV 156
                            LVS N+IVA ++      +A+ +F       G+ P+AV+++ V
Sbjct: 178 ENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNV 237

Query: 157 IRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
           +  C ++G+ +  + +HG  ++ GL  DV V N+V+DMY+    ++ A ++F  M+ KDV
Sbjct: 238 LPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDV 297

Query: 217 ISWTRM------MGLFVD----FE--------------------YAG-----DALKIFRE 241
           +SW  M      +G F D    FE                    YA      +AL +FR+
Sbjct: 298 VSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQ 357

Query: 242 MRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ-------SELRLSNSIIA 294
           MR      + V L++L+S  A+ G L  GK+ H   +   L         +L + N++I 
Sbjct: 358 MRLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALID 417

Query: 295 MYSKCGDLDSSRSVFNQITEK--SLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV- 351
           MYSKC    ++R++F+ I  K  S+V+WT +I G  Q+G A EAL  F +M Q     + 
Sbjct: 418 MYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMP 477

Query: 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS----VQNCLISSYSKCGNVDLA 407
           ++ T+   L A   L AL    Q+H         R+ S    V NCLI  YSK G+VD A
Sbjct: 478 NAFTISCALMACARLGALRFGRQIHAYVLRN---RFESAMLFVANCLIDMYSKSGDVDAA 534

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
            +VF+ M   R+ VSW +++ GYG++G GE AL ++++M + G VPD  T++ +L AC H
Sbjct: 535 RVVFDNM-HQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSH 593

Query: 468 AGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWR 527
           +G+ + G+  FN M ++  V P  EHY C+VDLL+RAG L +A  L   +     P +W 
Sbjct: 594 SGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWV 653

Query: 528 ALLSGCVLH 536
           ALLS C ++
Sbjct: 654 ALLSACRVY 662



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 103/371 (27%), Positives = 182/371 (49%), Gaps = 23/371 (6%)

Query: 155 TVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME-- 212
           T+   C +L S    ELIH   +  GL  D +    ++ MY        A+ + R +   
Sbjct: 34  TLFHQCKSLAS---AELIHQQLLVQGLPHDPT---HIISMYLTFNSPAKALSVLRRLHPS 87

Query: 213 CKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQ 272
              V  W +++   V   +  D L+++R M++     D      ++     +   + G  
Sbjct: 88  SHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGAS 147

Query: 273 LHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK---SLVSWTAIISGYVQ 329
           +HA V   G +  + + N +++MY +CG  +++R VF+++ E+    LVSW +I++ Y+Q
Sbjct: 148 VHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQ 207

Query: 330 NGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS 389
            G +  A+  F +M ++     D+++LV++L A   + A     Q+HG A  +G      
Sbjct: 208 GGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVF 267

Query: 390 VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
           V N ++  Y+KCG ++ A  VFE M  ++DVVSWN ++ GY   G  + AL L+ K+ E 
Sbjct: 268 VGNAVVDMYAKCGMMEEANKVFERMK-VKDVVSWNAMVTGYSQIGRFDDALGLFEKIREE 326

Query: 450 GEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSD 509
               +  T+ +++      GL  + L +F QM    ++  S+ +   +V LL  +GC   
Sbjct: 327 KIELNVVTWSAVIAGYAQRGLGFEALDVFRQM----RLCGSEPNVVTLVSLL--SGC--- 377

Query: 510 ASGLAGKLLEG 520
              LAG LL G
Sbjct: 378 --ALAGTLLHG 386



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 96/410 (23%), Positives = 176/410 (42%), Gaps = 56/410 (13%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEK----NVVSWSIVIHGYSINGFHEKSMKAF 59
           D  + + +++ Y + G+  +A  LF++I E+    NVV+WS VI GY+  G   +++  F
Sbjct: 296 DVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVF 355

Query: 60  SHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE---------------- 103
             M L G  PN  T+V +L   A    L   +  H   +K+ L                 
Sbjct: 356 RQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINAL 415

Query: 104 SDLFEGLKNPY---------------LVSCNAIVAGFINN-------KLFQQAVLLFNFF 141
            D++   K+P                +V+   ++ G   +       +LF Q +   NF 
Sbjct: 416 IDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNF- 474

Query: 142 RGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGL-ILDVSVNNSVLDMYSCLMD 200
               ++PNA T+   +  C  LG+      IH   ++       + V N ++DMYS   D
Sbjct: 475 ----VMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGD 530

Query: 201 LDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISV 260
           +DAA  +F  M  ++ +SWT +M  +       +AL+IF EM+K  ++ D V  + ++  
Sbjct: 531 VDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYA 590

Query: 261 NAILGDLKRG-KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVS 319
            +  G + +G    +      G+         ++ + S+ G LD +  +   +  K   +
Sbjct: 591 CSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPA 650

Query: 320 -WTAIISG---YVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGE 365
            W A++S    Y        A NQ +++   ++ +  S TL+S + A+  
Sbjct: 651 VWVALLSACRVYANVELGEYAANQLLEL---ESGNDGSYTLLSNIYANAR 697


>gi|242037917|ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
 gi|241920207|gb|EER93351.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
          Length = 862

 Score =  265 bits (677), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 172/617 (27%), Positives = 308/617 (49%), Gaps = 57/617 (9%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  S L+  Y  +G +++A + FD +P ++ V W++++ GY   G    +++ F +M 
Sbjct: 175 DVYVGSALIKMYSDAGLLRDARDAFDGMPWRDCVLWNVMMDGYIKAGDVGGAVRLFRNMR 234

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
           +SG  PN  T+   L   A   +L     +H L VK GLE +                  
Sbjct: 235 VSGCEPNFATLACFLSVCAAEADLLSGVQLHSLAVKCGLEQEVAVANTLLSMYAKCRCLD 294

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               LFE L    LV+ N +++G + N L  +A+ LF     SG  P++VT+++++    
Sbjct: 295 DAWRLFELLPRDDLVTWNGMISGCVQNGLLDEALGLFCDMLRSGARPDSVTLVSLLPALT 354

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            L      + +HG  I+  + +D  + ++++D+Y    D+  A  ++      DV+  + 
Sbjct: 355 DLNGLKQGKEVHGYIIRNCVHMDAFLVSALVDIYFKCRDVRTARNLYDAARAIDVVIGST 414

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++  +V    +  AL++FR + +  I  + V + +++   A +  L  G+++H  V+   
Sbjct: 415 VISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPACASISALPLGQEIHGYVLRNA 474

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
            + +  + ++++ MY+KCG LD S  +F++++ K  V+W ++IS + QNG  +EAL+ F 
Sbjct: 475 YEGKCYVESALMDMYAKCGRLDLSHYIFSKMSLKDEVTWNSMISSFSQNGEPQEALDLFR 534

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +M  E     +++T+ S L+A   L A+    ++HG+  +         ++ LI  Y+KC
Sbjct: 535 QMCMEGI-KYNNVTISSALSACASLPAIYYGKEIHGVIIKGPIKADIFAESALIDMYAKC 593

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           GN++LA  VFE M   ++ VSWN+II  YG +G  + +++  H+M E G  PD  T+L++
Sbjct: 594 GNMELALRVFEFMPD-KNEVSWNSIISAYGAHGLVKESVSFLHRMQEEGYKPDHVTFLAL 652

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           ++AC HAGL  +GL +F  M +E  + P  EH+ C+VDL +R+G L  A      +    
Sbjct: 653 ISACAHAGLVEEGLQLFQCMTKEYLIAPRMEHFACMVDLYSRSGRLDKAIQFIADMPFKP 712

Query: 522 GPNIWRALLSGCVLH---------------------------------VGRFQDAEALRS 548
              IW ALL  C +H                                  GR+     +R 
Sbjct: 713 DAGIWGALLHACRVHRNVELADIASQELFKLDPGNSGYYVLMSNINAVAGRWDGVSKVRR 772

Query: 549 GSQKKGIIKIPGISFLN 565
             +   I+KIPG S+++
Sbjct: 773 LMKDNKILKIPGYSWVD 789



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 138/526 (26%), Positives = 257/526 (48%), Gaps = 34/526 (6%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEK---NVVSWSIVIHGYSINGFHEKSM----KAFSH 61
           ++LL  Y  + + ++A  +F  +P     + + W+ +I G++  G H  ++    K ++H
Sbjct: 74  TRLLGMYVLARRFRDAVAVFSALPRAAAGSSLPWNWLIRGFTAAGHHSLAVLFYVKMWTH 133

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL--------------- 106
                  P++ T+  V+ + A L  + L R +H      GL SD+               
Sbjct: 134 PAAPS--PDAHTLPYVVKSCAALGAVSLGRLVHRTARATGLASDVYVGSALIKMYSDAGL 191

Query: 107 -------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                  F+G+     V  N ++ G+I       AV LF   R SG  PN  T+   +  
Sbjct: 192 LRDARDAFDGMPWRDCVLWNVMMDGYIKAGDVGGAVRLFRNMRVSGCEPNFATLACFLSV 251

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C A         +H L +K GL  +V+V N++L MY+    LD A ++F  +   D+++W
Sbjct: 252 CAAEADLLSGVQLHSLAVKCGLEQEVAVANTLLSMYAKCRCLDDAWRLFELLPRDDLVTW 311

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
             M+   V      +AL +F +M +S    D+V L++L+     L  LK+GK++H  ++ 
Sbjct: 312 NGMISGCVQNGLLDEALGLFCDMLRSGARPDSVTLVSLLPALTDLNGLKQGKEVHGYIIR 371

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
             +  +  L ++++ +Y KC D+ ++R++++      +V  + +ISGYV NG + +AL  
Sbjct: 372 NCVHMDAFLVSALVDIYFKCRDVRTARNLYDAARAIDVVIGSTVISGYVLNGMSEKALQM 431

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           F +   E+    +++T+ S+L A   ++AL +  ++HG      +     V++ L+  Y+
Sbjct: 432 F-RYLLEQCIKPNAVTVASVLPACASISALPLGQEIHGYVLRNAYEGKCYVESALMDMYA 490

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           KCG +DL++ +F +M  L+D V+WN++I  +  NG  + AL L+ +M   G   ++ T  
Sbjct: 491 KCGRLDLSHYIFSKMS-LKDEVTWNSMISSFSQNGEPQEALDLFRQMCMEGIKYNNVTIS 549

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAG 505
           S L+AC        G  I   +I +  +K        ++D+ A+ G
Sbjct: 550 SALSACASLPAIYYGKEIHGVII-KGPIKADIFAESALIDMYAKCG 594



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 157/327 (48%), Gaps = 25/327 (7%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  S L+  YFK   ++ A NL+D     +VV  S VI GY +NG  EK+++ F ++
Sbjct: 376 MDAFLVSALVDIYFKCRDVRTARNLYDAARAIDVVIGSTVISGYVLNGMSEKALQMFRYL 435

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPYL----- 115
           +   + PN+ T+  VL A A +  L L + IHG +++   E   +    L + Y      
Sbjct: 436 LEQCIKPNAVTVASVLPACASISALPLGQEIHGYVLRNAYEGKCYVESALMDMYAKCGRL 495

Query: 116 ---------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                          V+ N++++ F  N   Q+A+ LF      G+  N VT+ + +  C
Sbjct: 496 DLSHYIFSKMSLKDEVTWNSMISSFSQNGEPQEALDLFRQMCMEGIKYNNVTISSALSAC 555

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
            +L +    + IHG+ IK  +  D+   ++++DMY+   +++ A+++F  M  K+ +SW 
Sbjct: 556 ASLPAIYYGKEIHGVIIKGPIKADIFAESALIDMYAKCGNMELALRVFEFMPDKNEVSWN 615

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++  +       +++     M++     D V  L LIS  A  G ++ G QL  Q +  
Sbjct: 616 SIISAYGAHGLVKESVSFLHRMQEEGYKPDHVTFLALISACAHAGLVEEGLQLF-QCMTK 674

Query: 281 GLQSELRLSN--SIIAMYSKCGDLDSS 305
                 R+ +   ++ +YS+ G LD +
Sbjct: 675 EYLIAPRMEHFACMVDLYSRSGRLDKA 701



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 154/326 (47%), Gaps = 10/326 (3%)

Query: 147 VPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILD---VSVNNSVLDMYSCLMDLDA 203
           V +A  +L ++RGCV+     L   IH   +  G + +   ++++  +L MY        
Sbjct: 29  VSSADRLLALLRGCVSAPHLPLGLQIHARAVVSGALSNHNHLALHTRLLGMYVLARRFRD 88

Query: 204 AIQIFREME---CKDVISWTRMMGLFVDFEYAGDALKIFREM--RKSRIICDTVALLNLI 258
           A+ +F  +        + W  ++  F    +   A+  + +M    +    D   L  ++
Sbjct: 89  AVAVFSALPRAAAGSSLPWNWLIRGFTAAGHHSLAVLFYVKMWTHPAAPSPDAHTLPYVV 148

Query: 259 SVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLV 318
              A LG +  G+ +H      GL S++ + +++I MYS  G L  +R  F+ +  +  V
Sbjct: 149 KSCAALGAVSLGRLVHRTARATGLASDVYVGSALIKMYSDAGLLRDARDAFDGMPWRDCV 208

Query: 319 SWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGI 378
            W  ++ GY++ G    A+  F  MR    +  +  TL   L+     A L   +QLH +
Sbjct: 209 LWNVMMDGYIKAGDVGGAVRLFRNMRVSGCEP-NFATLACFLSVCAAEADLLSGVQLHSL 267

Query: 379 AFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGET 438
           A + G  +  +V N L+S Y+KC  +D A+ +FE +    D+V+WN +I G   NG  + 
Sbjct: 268 AVKCGLEQEVAVANTLLSMYAKCRCLDDAWRLFELLP-RDDLVTWNGMISGCVQNGLLDE 326

Query: 439 ALALYHKMTETGEVPDSSTYLSILNA 464
           AL L+  M  +G  PDS T +S+L A
Sbjct: 327 ALGLFCDMLRSGARPDSVTLVSLLPA 352


>gi|449442767|ref|XP_004139152.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Cucumis sativus]
          Length = 743

 Score =  265 bits (677), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 171/549 (31%), Positives = 279/549 (50%), Gaps = 21/549 (3%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  S L+S Y K G I     +FD + ++NVV W+ +I  YS  G  + +   F  M 
Sbjct: 83  DSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTTIIGSYSREGDIDIAFSMFKQMR 142

Query: 64  LSGLLPNSFTMVGVLVAAAGL----------------QNLELARSIHGLMVKFGLESD-- 105
            SG+ P S T++ +L   + L                 +L L+ S+  +  K G  +D  
Sbjct: 143 ESGIQPTSVTLLSLLPGISKLPLLLCLHCLIILHGFESDLALSNSMVNMYGKCGRIADAR 202

Query: 106 -LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
            LF+ +    +VS N++++ +      ++ + L    +   + P+  T  + +      G
Sbjct: 203 RLFQSIDCRDIVSWNSLLSAYSKIGATEEILQLLQAMKIEDIKPDKQTFCSALSASAIKG 262

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
              L +L+HGL +K GL +D  V ++++ +Y     LD A ++F+    KDV+ WT M+ 
Sbjct: 263 DLRLGKLVHGLMLKDGLNIDQHVESALVVLYLRCRCLDPAYKVFKSTTEKDVVMWTAMIS 322

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
             V  + A  AL +F +M +S +   T  L + ++  A LG    G  +H  V+  G+  
Sbjct: 323 GLVQNDCADKALGVFYQMIESNVKPSTATLASGLAACAQLGCCDIGASIHGYVLRQGIML 382

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           ++   NS++ MY+KC  L  S S+FN++ EK LVSW AI++G+ +NG   + +  F +MR
Sbjct: 383 DIPAQNSLVTMYAKCNKLQQSCSIFNKMVEKDLVSWNAIVAGHAKNGYLSKGIFFFNEMR 442

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
           +      DSIT+ S+L A G   AL     +H     +        +  L+  Y KCGN+
Sbjct: 443 KSFLRP-DSITVTSLLQACGSAGALCQGKWIHNFVLRSSLIPCIMTETALVDMYFKCGNL 501

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           + A   F+ M   RD+V+W+T+I GYG NG GE AL  Y +   TG  P+   ++S+L+A
Sbjct: 502 ENAQKCFDCM-LQRDLVAWSTLIVGYGFNGKGEIALRKYSEFLGTGMEPNHVIFISVLSA 560

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C H GL + GL I+  M ++ ++ P+ EH  CVVDLL+RAG + +A      + +     
Sbjct: 561 CSHGGLISKGLSIYESMTKDFRMSPNLEHRACVVDLLSRAGKVDEAYSFYKMMFKEPSIV 620

Query: 525 IWRALLSGC 533
           +   LL  C
Sbjct: 621 VLGMLLDAC 629



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 121/484 (25%), Positives = 227/484 (46%), Gaps = 33/484 (6%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ +++ Y K G+I +A  LF  I  +++VSW+ ++  YS  G  E+ ++    M +  +
Sbjct: 185 SNSMVNMYGKCGRIADARRLFQSIDCRDIVSWNSLLSAYSKIGATEEILQLLQAMKIEDI 244

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
            P+  T    L A+A   +L L + +HGLM+K GL  D                      
Sbjct: 245 KPDKQTFCSALSASAIKGDLRLGKLVHGLMLKDGLNIDQHVESALVVLYLRCRCLDPAYK 304

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F+      +V   A+++G + N    +A+ +F     S + P+  T+ + +  C  LG 
Sbjct: 305 VFKSTTEKDVVMWTAMISGLVQNDCADKALGVFYQMIESNVKPSTATLASGLAACAQLGC 364

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
             +   IHG  ++ G++LD+   NS++ MY+    L  +  IF +M  KD++SW  ++  
Sbjct: 365 CDIGASIHGYVLRQGIMLDIPAQNSLVTMYAKCNKLQQSCSIFNKMVEKDLVSWNAIVAG 424

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
                Y    +  F EMRKS +  D++ + +L+      G L +GK +H  V+   L   
Sbjct: 425 HAKNGYLSKGIFFFNEMRKSFLRPDSITVTSLLQACGSAGALCQGKWIHNFVLRSSLIPC 484

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           +    +++ MY KCG+L++++  F+ + ++ LV+W+ +I GY  NG    AL ++ +   
Sbjct: 485 IMTETALVDMYFKCGNLENAQKCFDCMLQRDLVAWSTLIVGYGFNGKGEIALRKYSEFLG 544

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN-----CLISSYSK 400
              +  + +  +S+L+A      +   L +    +E+    +R   N     C++   S+
Sbjct: 545 TGMEP-NHVIFISVLSACSHGGLISKGLSI----YESMTKDFRMSPNLEHRACVVDLLSR 599

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
            G VD AY  ++ M     +V    ++    VNG  E    +   M E   V D   ++ 
Sbjct: 600 AGKVDEAYSFYKMMFKEPSIVVLGMLLDACRVNGRVELGKVIARDMFELKPV-DPGNFVQ 658

Query: 461 ILNA 464
           + N+
Sbjct: 659 LANS 662



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 140/299 (46%), Gaps = 7/299 (2%)

Query: 236 LKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAM 295
           L+ +  M+K+    D     +L      L     G  LH  VV+ GL  +  + +S+I+ 
Sbjct: 34  LQTYISMQKTHTQLDAYTFPSLFKACTNLNLFSHGLSLHQSVVVNGLSHDSYIGSSLISF 93

Query: 296 YSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSIT 355
           Y+K G +   R VF+ + ++++V WT II  Y + G    A + F +MR+       S+T
Sbjct: 94  YAKFGCIHLGRKVFDTMLKRNVVPWTTIIGSYSREGDIDIAFSMFKQMRESGIQPT-SVT 152

Query: 356 LVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMG 415
           L+S+L     ++ L + L LH +    GF    ++ N +++ Y KCG +  A  +F+ + 
Sbjct: 153 LLSLLPG---ISKLPLLLCLHCLIILHGFESDLALSNSMVNMYGKCGRIADARRLFQSID 209

Query: 416 FLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGL 475
             RD+VSWN+++  Y   G  E  L L   M      PD  T+ S L+A    G    G 
Sbjct: 210 -CRDIVSWNSLLSAYSKIGATEEILQLLQAMKIEDIKPDKQTFCSALSASAIKGDLRLGK 268

Query: 476 VIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCV 534
           ++   M+++  +   Q     +V L  R  CL  A  +     E     +W A++SG V
Sbjct: 269 LVHGLMLKDG-LNIDQHVESALVVLYLRCRCLDPAYKVFKSTTEK-DVVMWTAMISGLV 325



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 90/392 (22%), Positives = 176/392 (44%), Gaps = 32/392 (8%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           ID +  S L+  Y +   +  A  +F    EK+VV W+ +I G   N   +K++  F  M
Sbjct: 281 IDQHVESALVVLYLRCRCLDPAYKVFKSTTEKDVVMWTAMISGLVQNDCADKALGVFYQM 340

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
           + S + P++ T+   L A A L   ++  SIHG +++ G+  D                 
Sbjct: 341 IESNVKPSTATLASGLAACAQLGCCDIGASIHGYVLRQGIMLDIPAQNSLVTMYAKCNKL 400

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +F  +    LVS NAIVAG   N    + +  FN  R S L P+++T+ ++++ C
Sbjct: 401 QQSCSIFNKMVEKDLVSWNAIVAGHAKNGYLSKGIFFFNEMRKSFLRPDSITVTSLLQAC 460

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
            + G+    + IH   ++  LI  +    +++DMY    +L+ A + F  M  +D+++W+
Sbjct: 461 GSAGALCQGKWIHNFVLRSSLIPCIMTETALVDMYFKCGNLENAQKCFDCMLQRDLVAWS 520

Query: 221 RMMGLFVDFEYAGD---ALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
               L V + + G    AL+ + E   + +  + V  ++++S  +  G + +G  ++  +
Sbjct: 521 T---LIVGYGFNGKGEIALRKYSEFLGTGMEPNHVIFISVLSACSHGGLISKGLSIYESM 577

Query: 278 VLG-GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQI-TEKSLVSWTAIISGYVQNGCARE 335
                +   L     ++ + S+ G +D + S +  +  E S+V    ++     NG  R 
Sbjct: 578 TKDFRMSPNLEHRACVVDLLSRAGKVDEAYSFYKMMFKEPSIVVLGMLLDACRVNG--RV 635

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELA 367
            L + I     +   VD    V +  +   ++
Sbjct: 636 ELGKVIARDMFELKPVDPGNFVQLANSYASMS 667


>gi|449444600|ref|XP_004140062.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17210-like [Cucumis sativus]
          Length = 747

 Score =  265 bits (677), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 161/546 (29%), Positives = 287/546 (52%), Gaps = 32/546 (5%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTM 74
           Y K G +  A+  FD    K+ VSW++++HG   NG     +  F     +   PN  ++
Sbjct: 92  YMKYGDLDSAQRAFDSTKNKDSVSWNVMVHGNFSNGSIMAGLCWFIKGRFAHFQPNISSL 151

Query: 75  VGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYL------------------- 115
           + V+ A   L+      + HG + + G  + L   ++N  L                   
Sbjct: 152 LLVIQAFRELKIYSQGFAFHGYIFRSGFSAIL--SVQNSLLSLYAEVHMYFAHKLFGEMS 209

Query: 116 -----VSCNAIVAGFINNKLFQQAVLLF-NFFRGSGLVPNAVTMLTVIRGCVALGSRALC 169
                VS + ++ GF+     +Q  L+F N    +G+ P+ VT+++V++ C  L   +L 
Sbjct: 210 VRNDVVSWSVMIGGFVQIGEDEQGFLMFRNMVTEAGIPPDGVTVVSVLKACTNLKDISLG 269

Query: 170 ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDF 229
            ++HGL I  GL  D+ V NS++DMYS   ++ +A + F+E+  K++ISW  M+  ++  
Sbjct: 270 TMVHGLVIFRGLEDDLFVGNSLIDMYSKCFNVHSAFKAFKEIPEKNIISWNLMLSAYILN 329

Query: 230 EYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLS 289
           E   +AL +   M +     D V L N++ +     D  + + +H  ++  G +S   L 
Sbjct: 330 ESHLEALALLGTMVREGAEKDEVTLANVLQIAKHFLDSLKCRSVHGVIIRKGYESNELLL 389

Query: 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD 349
           NS+I  Y+KC  ++ +R VF+ + +K +V+W+ +I+G+ +NG   EA++ F +M +E   
Sbjct: 390 NSVIDAYAKCNLVELARMVFDGMNKKDVVAWSTMIAGFARNGKPDEAISVFKQMNEEVIP 449

Query: 350 SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYI 409
             +++++++++ A    A L      HGIA   G      +   +I  YSKCG+++ +  
Sbjct: 450 --NNVSIMNLMEACAVSAELRQSKWAHGIAVRRGLASEVDIGTSIIDMYSKCGDIEASIR 507

Query: 410 VFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAG 469
            F ++   ++VV W+ +I  + +NG    AL L+ K+ + G  P++ T LS+L+AC H G
Sbjct: 508 AFNQIP-QKNVVCWSAMISAFRINGLAHEALMLFEKIKQNGTKPNAVTALSLLSACSHGG 566

Query: 470 LTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM--GPNIWR 527
           L  +GL  F  M++++ ++P  EHY C+VD+L+RAG  ++A  L  KL + M  G +IW 
Sbjct: 567 LMEEGLSFFTSMVQKHGIEPGLEHYSCIVDMLSRAGKFNEALELIEKLPKEMEAGASIWG 626

Query: 528 ALLSGC 533
            LLS C
Sbjct: 627 TLLSSC 632



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 125/449 (27%), Positives = 228/449 (50%), Gaps = 30/449 (6%)

Query: 43  IHGYSINGFHEKSMKAFSHMMLSGL-LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG 101
           I   S +G  +++++ +  + +SG  L +++ +  +L A +   +  L  ++HG ++K G
Sbjct: 19  IKDASYSGNWQEALQLYHEIRISGAQLSDTWVLPSILKACSN-TSFNLGTAMHGCLIKQG 77

Query: 102 LES----------------DL------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFN 139
            +S                DL      F+  KN   VS N +V G  +N      +  F 
Sbjct: 78  CQSSTSIANSTIDFYMKYGDLDSAQRAFDSTKNKDSVSWNVMVHGNFSNGSIMAGLCWFI 137

Query: 140 FFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLM 199
             R +   PN  ++L VI+    L   +     HG   + G    +SV NS+L +Y+  +
Sbjct: 138 KGRFAHFQPNISSLLLVIQAFRELKIYSQGFAFHGYIFRSGFSAILSVQNSLLSLYA-EV 196

Query: 200 DLDAAIQIFREMECK-DVISWTRMMGLFVDFEYAGDALKIFREM-RKSRIICDTVALLNL 257
            +  A ++F EM  + DV+SW+ M+G FV          +FR M  ++ I  D V ++++
Sbjct: 197 HMYFAHKLFGEMSVRNDVVSWSVMIGGFVQIGEDEQGFLMFRNMVTEAGIPPDGVTVVSV 256

Query: 258 ISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSL 317
           +     L D+  G  +H  V+  GL+ +L + NS+I MYSKC ++ S+   F +I EK++
Sbjct: 257 LKACTNLKDISLGTMVHGLVIFRGLEDDLFVGNSLIDMYSKCFNVHSAFKAFKEIPEKNI 316

Query: 318 VSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHG 377
           +SW  ++S Y+ N    EAL     M +E  +  D +TL ++L  +        C  +HG
Sbjct: 317 ISWNLMLSAYILNESHLEALALLGTMVREGAEK-DEVTLANVLQIAKHFLDSLKCRSVHG 375

Query: 378 IAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGE 437
           +    G+     + N +I +Y+KC  V+LA +VF+ M   +DVV+W+T+I G+  NG  +
Sbjct: 376 VIIRKGYESNELLLNSVIDAYAKCNLVELARMVFDGMN-KKDVVAWSTMIAGFARNGKPD 434

Query: 438 TALALYHKMTETGEVPDSSTYLSILNACG 466
            A++++ +M E   +P++ + ++++ AC 
Sbjct: 435 EAISVFKQMNEE-VIPNNVSIMNLMEACA 462



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/335 (23%), Positives = 165/335 (49%), Gaps = 24/335 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L+  Y K   +  A   F EIPEKN++SW++++  Y +N  H +++     M+
Sbjct: 284 DLFVGNSLIDMYSKCFNVHSAFKAFKEIPEKNIISWNLMLSAYILNESHLEALALLGTMV 343

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
             G   +  T+  VL  A    +    RS+HG++++ G ES+                  
Sbjct: 344 REGAEKDEVTLANVLQIAKHFLDSLKCRSVHGVIIRKGYESNELLLNSVIDAYAKCNLVE 403

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +F+G+    +V+ + ++AGF  N    +A+ +F       ++PN V+++ ++  C 
Sbjct: 404 LARMVFDGMNKKDVVAWSTMIAGFARNGKPDEAISVFKQMN-EEVIPNNVSIMNLMEACA 462

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
                   +  HG+ ++ GL  +V +  S++DMYS   D++A+I+ F ++  K+V+ W+ 
Sbjct: 463 VSAELRQSKWAHGIAVRRGLASEVDIGTSIIDMYSKCGDIEASIRAFNQIPQKNVVCWSA 522

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG- 280
           M+  F     A +AL +F +++++    + V  L+L+S  +  G ++ G      +V   
Sbjct: 523 MISAFRINGLAHEALMLFEKIKQNGTKPNAVTALSLLSACSHGGLMEEGLSFFTSMVQKH 582

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK 315
           G++  L   + I+ M S+ G  + +  +  ++ ++
Sbjct: 583 GIEPGLEHYSCIVDMLSRAGKFNEALELIEKLPKE 617



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 160/339 (47%), Gaps = 5/339 (1%)

Query: 131 FQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNS 190
           +Q+A+ L++  R SG   +   +L  I    +  S  L   +HG  IK G     S+ NS
Sbjct: 28  WQEALQLYHEIRISGAQLSDTWVLPSILKACSNTSFNLGTAMHGCLIKQGCQSSTSIANS 87

Query: 191 VLDMYSCLMDLDAAIQIFREMECKDVISWTRMM-GLFVDFEYAGDALKIFREMRKSRIIC 249
            +D Y    DLD+A + F   + KD +SW  M+ G F +       L  F + R +    
Sbjct: 88  TIDFYMKYGDLDSAQRAFDSTKNKDSVSWNVMVHGNFSNGSIMA-GLCWFIKGRFAHFQP 146

Query: 250 DTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVF 309
           +  +LL +I     L    +G   H  +   G  + L + NS++++Y++   +  +  +F
Sbjct: 147 NISSLLLVIQAFRELKIYSQGFAFHGYIFRSGFSAILSVQNSLLSLYAEV-HMYFAHKLF 205

Query: 310 NQITEKS-LVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAA 368
            +++ ++ +VSW+ +I G+VQ G   +    F  M  E     D +T+VS+L A   L  
Sbjct: 206 GEMSVRNDVVSWSVMIGGFVQIGEDEQGFLMFRNMVTEAGIPPDGVTVVSVLKACTNLKD 265

Query: 369 LEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIY 428
           + +   +HG+    G      V N LI  YSKC NV  A+  F+E+   ++++SWN ++ 
Sbjct: 266 ISLGTMVHGLVIFRGLEDDLFVGNSLIDMYSKCFNVHSAFKAFKEIP-EKNIISWNLMLS 324

Query: 429 GYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
            Y +N     ALAL   M   G   D  T  ++L    H
Sbjct: 325 AYILNESHLEALALLGTMVREGAEKDEVTLANVLQIAKH 363



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 87/262 (33%), Positives = 128/262 (48%), Gaps = 15/262 (5%)

Query: 228 DFEYAG---DALKIFREMRKSRI-ICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
           D  Y+G   +AL+++ E+R S   + DT  L +++   +       G  +H  ++  G Q
Sbjct: 21  DASYSGNWQEALQLYHEIRISGAQLSDTWVLPSILKACSNT-SFNLGTAMHGCLIKQGCQ 79

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
           S   ++NS I  Y K GDLDS++  F+    K  VSW  ++ G   NG     L  FIK 
Sbjct: 80  SSTSIANSTIDFYMKYGDLDSAQRAFDSTKNKDSVSWNVMVHGNFSNGSIMAGLCWFIKG 139

Query: 344 R-QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
           R      ++ S+ LV  + A  EL         HG  F +GF    SVQN L+S Y++  
Sbjct: 140 RFAHFQPNISSLLLV--IQAFRELKIYSQGFAFHGYIFRSGFSAILSVQNSLLSLYAEV- 196

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM-TETGEVPDSSTYLSI 461
           ++  A+ +F EM    DVVSW+ +I G+   G  E    ++  M TE G  PD  T +S+
Sbjct: 197 HMYFAHKLFGEMSVRNDVVSWSVMIGGFVQIGEDEQGFLMFRNMVTEAGIPPDGVTVVSV 256

Query: 462 LNACGH-----AGLTNDGLVIF 478
           L AC +      G    GLVIF
Sbjct: 257 LKACTNLKDISLGTMVHGLVIF 278


>gi|15226150|ref|NP_180924.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75101011|sp|P93005.1|PP181_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33680
 gi|1707007|gb|AAC69139.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253774|gb|AEC08868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 727

 Score =  265 bits (676), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 182/569 (31%), Positives = 296/569 (52%), Gaps = 45/569 (7%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKS---MKA 58
           CI   N   L++ Y K GK+ +A ++F+ I  K+VVSW+ +I GYS NG    S   M+ 
Sbjct: 48  CIQHANV--LVNFYAKCGKLAKAHSIFNAIICKDVVSWNSLITGYSQNGGISSSYTVMQL 105

Query: 59  FSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF----------- 107
           F  M    +LPN++T+ G+  A + LQ+  + R  H L+VK     D++           
Sbjct: 106 FREMRAQDILPNAYTLAGIFKAESSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCK 165

Query: 108 -----EGLK--------NPYLVSCNAIVAGFINNKLFQQAVLLFNFF-----RGSGLVPN 149
                +GLK        N Y  S   +V+G+      ++A+ +FN F      GS     
Sbjct: 166 AGLVEDGLKVFAYMPERNTYTWS--TMVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYV 223

Query: 150 AVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFR 209
              +L+ +   + +G   L   IH +TIK GL+  V+++N+++ MYS    L+ A ++F 
Sbjct: 224 FTAVLSSLAATIYVG---LGRQIHCITIKNGLLGFVALSNALVTMYSKCESLNEACKMFD 280

Query: 210 EMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKR 269
               ++ I+W+ M+  +     + +A+K+F  M  + I      ++ +++  + +  L+ 
Sbjct: 281 SSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEE 340

Query: 270 GKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQ 329
           GKQLH+ ++  G +  L  + +++ MY+K G L  +R  F+ + E+ +  WT++ISGYVQ
Sbjct: 341 GKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQ 400

Query: 330 NGCAREALNQFIKMRQEKTDSV--DSITLVSILTASGELAALEICLQLHGIAFEAGFPRY 387
           N    EAL   I  R+ KT  +  +  T+ S+L A   LA LE+  Q+HG   + GF   
Sbjct: 401 NSDNEEAL---ILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLE 457

Query: 388 RSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMT 447
             + + L + YSKCG+++   +VF      +DVVSWN +I G   NG G+ AL L+ +M 
Sbjct: 458 VPIGSALSTMYSKCGSLEDGNLVFRRTPN-KDVVSWNAMISGLSHNGQGDEALELFEEML 516

Query: 448 ETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCL 507
             G  PD  T+++I++AC H G    G   FN M ++  + P  +HY C+VDLL+RAG L
Sbjct: 517 AEGMEPDDVTFVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACMVDLLSRAGQL 576

Query: 508 SDASGLAGKLLEGMGPNIWRALLSGCVLH 536
            +A           G  +WR LLS C  H
Sbjct: 577 KEAKEFIESANIDHGLCLWRILLSACKNH 605



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 110/429 (25%), Positives = 207/429 (48%), Gaps = 35/429 (8%)

Query: 67  LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES---------------------- 104
           L P++ T++  L   +  +NL   R++HG +++ G  +                      
Sbjct: 10  LNPHTSTLLKKLTHHSQQRNLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAH 69

Query: 105 DLFEGLKNPYLVSCNAIVAGFINNKLFQQA---VLLFNFFRGSGLVPNAVTMLTVIRGCV 161
            +F  +    +VS N+++ G+  N     +   + LF   R   ++PNA T+  + +   
Sbjct: 70  SIFNAIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAES 129

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
           +L S  +    H L +K+    D+ V+ S++ MY     ++  +++F  M  ++  +W+ 
Sbjct: 130 SLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWST 189

Query: 222 MMGLFVDFEYAGDALKIFRE-MRKSRIICDT----VALLNLISVNAILGDLKRGKQLHAQ 276
           M+  +       +A+K+F   +R+     D+     A+L+ ++    +G    G+Q+H  
Sbjct: 190 MVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSSLAATIYVG---LGRQIHCI 246

Query: 277 VVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
            +  GL   + LSN+++ MYSKC  L+ +  +F+   +++ ++W+A+++GY QNG + EA
Sbjct: 247 TIKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEA 306

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
           +  F +M        +  T+V +L A  ++  LE   QLH    + GF R+      L+ 
Sbjct: 307 VKLFSRMFSAGIKPSE-YTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVD 365

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
            Y+K G +  A   F+ +   RDV  W ++I GY  N   E AL LY +M   G +P+  
Sbjct: 366 MYAKAGCLADARKGFDCLQ-ERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDP 424

Query: 457 TYLSILNAC 465
           T  S+L AC
Sbjct: 425 TMASVLKAC 433



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 122/488 (25%), Positives = 223/488 (45%), Gaps = 37/488 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + L+  Y K+G +++   +F  +PE+N  +WS ++ GY+  G  E+++K F+  +
Sbjct: 152 DIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFL 211

Query: 64  LSGL--LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL-----------------ES 104
                   + +    VL + A    + L R IH + +K GL                 ES
Sbjct: 212 REKEEGSDSDYVFTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVALSNALVTMYSKCES 271

Query: 105 -----DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                 +F+   +   ++ +A+V G+  N    +AV LF+    +G+ P+  T++ V+  
Sbjct: 272 LNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNA 331

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYS---CLMDLDAAIQIFREMECKDV 216
           C  +      + +H   +KLG    +    +++DMY+   CL D        +E   +DV
Sbjct: 332 CSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQE---RDV 388

Query: 217 ISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQ 276
             WT ++  +V      +AL ++R M+ + II +   + +++   + L  L+ GKQ+H  
Sbjct: 389 ALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGH 448

Query: 277 VVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
            +  G   E+ + +++  MYSKCG L+    VF +   K +VSW A+ISG   NG   EA
Sbjct: 449 TIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEA 508

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEI-CLQLHGIAFEAGFPRYRSVQNCLI 395
           L  F +M  E  +  D +T V+I++A      +E      + ++ + G         C++
Sbjct: 509 LELFEEMLAEGMEP-DDVTFVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACMV 567

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALY--HKMTETGEVP 453
              S+ G +  A    E       +  W  ++       HG+  L +Y   K+   G   
Sbjct: 568 DLLSRAGQLKEAKEFIESANIDHGLCLWRILL--SACKNHGKCELGVYAGEKLMALGS-R 624

Query: 454 DSSTYLSI 461
           +SSTY+ +
Sbjct: 625 ESSTYVQL 632



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 183/372 (49%), Gaps = 17/372 (4%)

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD--- 228
           +HG  I+ G    +   N +++ Y+    L  A  IF  + CKDV+SW  ++  +     
Sbjct: 36  VHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHSIFNAIICKDVVSWNSLITGYSQNGG 95

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
              +   +++FREMR   I+ +   L  +    + L     G+Q HA VV      ++ +
Sbjct: 96  ISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSSTVGRQAHALVVKMSSFGDIYV 155

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL---NQFIKMRQ 345
             S++ MY K G ++    VF  + E++  +W+ ++SGY   G   EA+   N F++ ++
Sbjct: 156 DTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLREKE 215

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
           E +DS       ++L++      + +  Q+H I  + G   + ++ N L++ YSKC +++
Sbjct: 216 EGSDS--DYVFTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVALSNALVTMYSKCESLN 273

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            A  +F+  G  R+ ++W+ ++ GY  NG    A+ L+ +M   G  P   T + +LNAC
Sbjct: 274 EACKMFDSSGD-RNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNAC 332

Query: 466 GHAGLTNDGLVIFNQMIE---ENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMG 522
                  +G  + + +++   E  +  +      +VD+ A+AGCL+DA       L+   
Sbjct: 333 SDICYLEEGKQLHSFLLKLGFERHLFATT----ALVDMYAKAGCLADARK-GFDCLQERD 387

Query: 523 PNIWRALLSGCV 534
             +W +L+SG V
Sbjct: 388 VALWTSLISGYV 399



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 106/227 (46%), Gaps = 8/227 (3%)

Query: 251 TVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFN 310
           T  LL  ++ ++   +L  G+ +H Q++  G  + ++ +N ++  Y+KCG L  + S+FN
Sbjct: 14  TSTLLKKLTHHSQQRNLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHSIFN 73

Query: 311 QITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV--DSITLVSILTASGELAA 368
            I  K +VSW ++I+GY QNG    +       R+ +   +  ++ TL  I  A   L +
Sbjct: 74  AIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSLQS 133

Query: 369 LEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIY 428
             +  Q H +  +        V   L+  Y K G V+    VF  M   R+  +W+T++ 
Sbjct: 134 STVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMP-ERNTYTWSTMVS 192

Query: 429 GYGVNGHGETALALYHKMTETGEVPDSSTY-----LSILNACGHAGL 470
           GY   G  E A+ +++      E    S Y     LS L A  + GL
Sbjct: 193 GYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSSLAATIYVGL 239


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  265 bits (676), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 153/491 (31%), Positives = 268/491 (54%), Gaps = 25/491 (5%)

Query: 52  HEKSMKAF-SHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGL 110
           H+  +K   + +++ GL  + F +  ++ A++   ++  AR +             F+ L
Sbjct: 33  HKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQV-------------FDDL 79

Query: 111 KNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCE 170
             P +   NAI+ G+  N  FQ A+L+++  + + + P++ T   +++ C  L    +  
Sbjct: 80  PRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGR 139

Query: 171 LIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFR--EMECKDVISWTRMMGLFVD 228
            +H    +LG   DV V N ++ +Y+    L +A  +F    +  + ++SWT ++  +  
Sbjct: 140 FVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQ 199

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
                +AL+IF  MRK  +  D VAL+++++    L DLK+G+ +HA VV  GL+ E  L
Sbjct: 200 NGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDL 259

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
             S+  MY+KCG + +++ +F+++   +L+ W A+ISGY +NG AREA++ F +M   K 
Sbjct: 260 LISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEM-INKD 318

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS---VQNCLISSYSKCGNVD 405
              D+I++ S ++A  ++ +LE   Q   +    G   YR    + + LI  ++KCG+V+
Sbjct: 319 VRPDTISITSAISACAQVGSLE---QARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVE 375

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            A +VF+     RDVV W+ +I GYG++G    A++LY  M   G  P+  T+L +L AC
Sbjct: 376 GARLVFDRT-LDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMAC 434

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI 525
            H+G+  +G   FN ++ ++K+ P Q+HY CV+DLL RAG L  A  +   +    G  +
Sbjct: 435 NHSGMVREGWWFFN-LMADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTV 493

Query: 526 WRALLSGCVLH 536
           W ALLS C  H
Sbjct: 494 WGALLSACKKH 504



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 113/453 (24%), Positives = 221/453 (48%), Gaps = 25/453 (5%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           +KL+      G I  A  +FD++P   +  W+ +I GYS N   + ++  +S+M L+ + 
Sbjct: 57  TKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVS 116

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--------------------- 107
           P+SFT   +L A +GL +L++ R +H  + + G ++D+F                     
Sbjct: 117 PDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTV 176

Query: 108 -EGLKNP--YLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
            EGL  P   +VS  AIV+ +  N    +A+ +F+  R   + P+ V +++V+     L 
Sbjct: 177 FEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQ 236

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
                  IH   +K+GL ++  +  S+  MY+    +  A  +F +M+  ++I W  M+ 
Sbjct: 237 DLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMIS 296

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            +    YA +A+ +F EM    +  DT+++ + IS  A +G L++ + ++  V     + 
Sbjct: 297 GYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRD 356

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           ++ +S+++I M++KCG ++ +R VF++  ++ +V W+A+I GY  +G AREA++ +  M 
Sbjct: 357 DVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAME 416

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
           +      D +T + +L A      +        +  +      +    C+I    + G++
Sbjct: 417 RGGVHPND-VTFLGLLMACNHSGMVREGWWFFNLMADHKINPQQQHYACVIDLLGRAGHL 475

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGE 437
           D AY V + M     V  W  ++     + H E
Sbjct: 476 DQAYEVIKCMPVQPGVTVWGALLSACKKHRHVE 508



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 107/392 (27%), Positives = 196/392 (50%), Gaps = 7/392 (1%)

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
           +A  + IH   + LGL     +   ++   S   D+  A Q+F ++    +  W  ++  
Sbjct: 34  KAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRG 93

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +    +  DAL ++  M+ +R+  D+    +L+   + L  L+ G+ +HAQV   G  ++
Sbjct: 94  YSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDAD 153

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFN--QITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
           + + N +IA+Y+KC  L S+R+VF    + E+++VSWTAI+S Y QNG   EAL  F  M
Sbjct: 154 VFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHM 213

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
           R+      D + LVS+L A   L  L+    +H    + G      +   L + Y+KCG 
Sbjct: 214 RKMDVKP-DWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQ 272

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           V  A I+F++M    +++ WN +I GY  NG+   A+ ++H+M      PD+ +  S ++
Sbjct: 273 VATAKILFDKMKS-PNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAIS 331

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
           AC   G       ++ + +  +  +        ++D+ A+ G +  A  +  + L+    
Sbjct: 332 ACAQVGSLEQARSMY-EYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLD-RDV 389

Query: 524 NIWRALLSGCVLHVGRFQDAEALRSGSQKKGI 555
            +W A++ G  LH GR ++A +L    ++ G+
Sbjct: 390 VVWSAMIVGYGLH-GRAREAISLYRAMERGGV 420



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 103/221 (46%), Gaps = 29/221 (13%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           I+P     L + Y K G++  A+ LFD++   N++ W+ +I GY+ NG+  +++  F  M
Sbjct: 255 IEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEM 314

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--------------- 107
           +   + P++ ++   + A A + +LE ARS++  + +     D+F               
Sbjct: 315 INKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSV 374

Query: 108 EGLK-------NPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
           EG +       +  +V  +A++ G+  +   ++A+ L+      G+ PN VT L ++  C
Sbjct: 375 EGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMAC 434

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDL 201
              G      ++        L+ D  +N      Y+C++DL
Sbjct: 435 NHSG------MVREGWWFFNLMADHKINPQ-QQHYACVIDL 468


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  265 bits (676), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 180/629 (28%), Positives = 306/629 (48%), Gaps = 69/629 (10%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGY-----SINGFHEKSMKA 58
           D + S+ LL+ Y K G +  A  +FD  PE+++V+W+ ++  Y     S +G  ++ +  
Sbjct: 111 DHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDSNDGNAQEGLHL 170

Query: 59  FSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------- 105
           F  +  S       T+  VL        L  A  +HG  +K GLE D             
Sbjct: 171 FRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSK 230

Query: 106 ---------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTV 156
                    LF+ ++   +V  N ++ G++   L ++A  LF+ F  SGL P+  ++  +
Sbjct: 231 CGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLI 290

Query: 157 IRGCVALGSR--ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
           + GC+  G+    L + +HG+ +K GL  DVSV NS+++MYS +     A ++F +M+  
Sbjct: 291 LNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHL 350

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICD--TVALLNLISVNAILGDL---KR 269
           D+ISW  M+          +++ +F ++    +  D  T+A + L +     G L    +
Sbjct: 351 DLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQ 410

Query: 270 GKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQ 329
           GKQ+HA  +  G  S+L +++ I+ MY KCGD+ ++  VFN I+    V+WT++ISG V 
Sbjct: 411 GKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVD 470

Query: 330 NGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS 389
           NG   +AL  + +MRQ +    D  T  +++ AS  + ALE   QLH    +        
Sbjct: 471 NGNEDQALRIYHRMRQSRV-MPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPF 529

Query: 390 VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
           V   L+  Y+KCGN++ AY +F++M  +R++  WN ++ G   +G+ E A+ L+  M   
Sbjct: 530 VGTSLVDMYAKCGNIEDAYRLFKKMN-VRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSH 588

Query: 450 GEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSD 509
           G  PD  +++ IL+AC HAGLT++     + M  +  ++P  EHY C+VD L RAG + +
Sbjct: 589 GIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQE 648

Query: 510 ASGLAGKLLEGMGPNIWRALLSGCVLH--------------------------------- 536
           A  +   +      +I RALL  C +                                  
Sbjct: 649 ADKVIETMPFKASASINRALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAA 708

Query: 537 VGRFQDAEALRSGSQKKGIIKIPGISFLN 565
             R+ D    R   ++K + K PG S+++
Sbjct: 709 ANRWDDVTDARKMMKRKNVKKDPGFSWID 737



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 107/393 (27%), Positives = 190/393 (48%), Gaps = 20/393 (5%)

Query: 156 VIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKD 215
           ++R  ++  +  L +  H   +  G   D  ++N++L MYS    L +A Q+F     +D
Sbjct: 83  LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERD 142

Query: 216 VISWTRMMGLF---VDFE--YAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG 270
           +++W  ++G +   VD     A + L +FR +R S      + L  ++ +    G L   
Sbjct: 143 LVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAA 202

Query: 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
           + +H   +  GL+ ++ +S +++ +YSKCG +  +R +F+ + E+ +V W  ++ GYVQ 
Sbjct: 203 EGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQL 262

Query: 331 GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAA----LEICLQLHGIAFEAGFPR 386
           G  +EA   F +  +      D  ++  IL  +G L A    LE+  Q+HGIA ++G   
Sbjct: 263 GLEKEAFQLFSEFHRSGLRP-DEFSVQLIL--NGCLWAGTDDLELGKQVHGIAVKSGLDS 319

Query: 387 YRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM 446
             SV N L++ YSK G    A  VF +M  L D++SWN++I     +   E ++ L+  +
Sbjct: 320 DVSVANSLVNMYSKMGCAYFAREVFNDMKHL-DLISWNSMISSCAQSSLEEESVNLFIDL 378

Query: 447 TETGEVPDSSTYLSIL-----NACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLL 501
              G  PD  T  SI       ACG   L + G  I    I+         + G ++D+ 
Sbjct: 379 LHEGLKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSG-ILDMY 437

Query: 502 ARAGCLSDASGLAGKLLEGMGPNIWRALLSGCV 534
            + G + +A G+    +       W +++SGCV
Sbjct: 438 IKCGDMVNA-GIVFNYISAPDDVAWTSMISGCV 469


>gi|168041820|ref|XP_001773388.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162675264|gb|EDQ61761.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 748

 Score =  265 bits (676), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 165/590 (27%), Positives = 297/590 (50%), Gaps = 41/590 (6%)

Query: 5   PYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML 64
           PY ++KL+S Y + G+++    +FD + EKNV +W+I+I GY+ N   E +++ ++ M  
Sbjct: 40  PYVANKLMSIYIRCGRLQNTREVFDTLVEKNVFNWTIMIGGYAENNHFEDAIEVYNKMRQ 99

Query: 65  SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL------------------ 106
           +G+ PN  T   +L A      L+  R IH  +   G +SDL                  
Sbjct: 100 NGVQPNEITFFNILKACTSPMALKWGRKIHDHIRHAGFQSDLRLGNALIHMYARCGSMDD 159

Query: 107 ----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA 162
               F G+ +  +++ N ++   + +    +A  LF   +  G VP+  T L+++     
Sbjct: 160 ARLVFNGMVDRDIITWNVMIGRLVQHGRGHEAFSLFLQMQREGFVPDTTTYLSMLNANAC 219

Query: 163 LGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
            G+    + +H   ++ GL  DV V  +++ MY+    +  A  +F +M  +++I+W  M
Sbjct: 220 TGALGWVKEVHSHALRAGLESDVRVGTALVHMYARSGSIKDARLVFDKMTERNIITWNSM 279

Query: 223 MGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLI-SVNAILGDLKRGKQLHAQVVLGG 281
           +G         +A  +FR+M++  ++ D +  +N++ +  A  G L+  +++H      G
Sbjct: 280 IGGLAQHGCGLEAFSLFRQMQREGLVPDAITYVNILNNACASTGALQWVRKVHDDAAKVG 339

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           L  ++R+ N+++ MY+KCG +D +R VF  + ++ +VSWT +I G  Q+G  REA + F+
Sbjct: 340 LDFDVRVGNALVHMYAKCGSMDDARRVFYGMVDRDVVSWTVMIGGLAQHGFGREAFSLFL 399

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +M++E     +  T +SIL       ALE   ++H  A  A    +  V N LI  Y+KC
Sbjct: 400 QMQREGF-VPNLTTYLSILNGKASTGALEWVKEVHTHAVNAELDSHLRVGNALIHMYAKC 458

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G+++ A +VF+ M   RD++SWN +I G   NGHG  A + + +M   G +PD++T +SI
Sbjct: 459 GSIENARLVFDRMED-RDIISWNAMIGGLAQNGHGREAFSHFLEMQREGFIPDAATLVSI 517

Query: 462 LNACGHAGLTNDGLVIFNQMIE---ENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
           LNAC      +    + +  +E   E+ ++        +V   A+ G + DA      + 
Sbjct: 518 LNACASTRALDRVKEVHSHALEAGLESDLRVGS----ALVHTYAKCGRIDDAR----LVF 569

Query: 519 EGMGPN---IWRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFLN 565
           EGM       W  ++ G   H GR  +A +L    Q  G +    I++L+
Sbjct: 570 EGMASRDIITWNVMIGGLAQH-GREHEAFSLFLQMQDVGFVP-DAITYLS 617



 Score =  255 bits (651), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 143/475 (30%), Positives = 258/475 (54%), Gaps = 25/475 (5%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+  Y + G + +A  +F+ + ++++++W+++I     +G   ++   F  M   G +P+
Sbjct: 147 LIHMYARCGSMDDARLVFNGMVDRDIITWNVMIGRLVQHGRGHEAFSLFLQMQREGFVPD 206

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------------FE 108
           + T + +L A A    L   + +H   ++ GLESD+                      F+
Sbjct: 207 TTTYLSMLNANACTGALGWVKEVHSHALRAGLESDVRVGTALVHMYARSGSIKDARLVFD 266

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR-GCVALGSRA 167
            +    +++ N+++ G   +    +A  LF   +  GLVP+A+T + ++   C + G+  
Sbjct: 267 KMTERNIITWNSMIGGLAQHGCGLEAFSLFRQMQREGLVPDAITYVNILNNACASTGALQ 326

Query: 168 LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
               +H    K+GL  DV V N+++ MY+    +D A ++F  M  +DV+SWT M+G   
Sbjct: 327 WVRKVHDDAAKVGLDFDVRVGNALVHMYAKCGSMDDARRVFYGMVDRDVVSWTVMIGGLA 386

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
              +  +A  +F +M++   + +    L++++  A  G L+  K++H   V   L S LR
Sbjct: 387 QHGFGREAFSLFLQMQREGFVPNLTTYLSILNGKASTGALEWVKEVHTHAVNAELDSHLR 446

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
           + N++I MY+KCG ++++R VF+++ ++ ++SW A+I G  QNG  REA + F++M++E 
Sbjct: 447 VGNALIHMYAKCGSIENARLVFDRMEDRDIISWNAMIGGLAQNGHGREAFSHFLEMQREG 506

Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
               D+ TLVSIL A     AL+   ++H  A EAG      V + L+ +Y+KCG +D A
Sbjct: 507 FIP-DAATLVSILNACASTRALDRVKEVHSHALEAGLESDLRVGSALVHTYAKCGRIDDA 565

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
            +VFE M   RD+++WN +I G   +G    A +L+ +M + G VPD+ TYLSIL
Sbjct: 566 RLVFEGMAS-RDIITWNVMIGGLAQHGREHEAFSLFLQMQDVGFVPDAITYLSIL 619



 Score =  212 bits (540), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 133/490 (27%), Positives = 249/490 (50%), Gaps = 35/490 (7%)

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES----------------------DLF 107
           +S+T V +L      ++L LA+ +H  ++K  +E                       ++F
Sbjct: 4   DSYTYVDILQKVFKHKDLVLAKQVHECIIKSEMEQHPYVANKLMSIYIRCGRLQNTREVF 63

Query: 108 EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRA 167
           + L    + +   ++ G+  N  F+ A+ ++N  R +G+ PN +T   +++ C +  +  
Sbjct: 64  DTLVEKNVFNWTIMIGGYAENNHFEDAIEVYNKMRQNGVQPNEITFFNILKACTSPMALK 123

Query: 168 LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
               IH      G   D+ + N+++ MY+    +D A  +F  M  +D+I+W  M+G  V
Sbjct: 124 WGRKIHDHIRHAGFQSDLRLGNALIHMYARCGSMDDARLVFNGMVDRDIITWNVMIGRLV 183

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
                 +A  +F +M++   + DT   L++++ NA  G L   K++H+  +  GL+S++R
Sbjct: 184 QHGRGHEAFSLFLQMQREGFVPDTTTYLSMLNANACTGALGWVKEVHSHALRAGLESDVR 243

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
           +  +++ MY++ G +  +R VF+++TE+++++W ++I G  Q+GC  EA + F +M++E 
Sbjct: 244 VGTALVHMYARSGSIKDARLVFDKMTERNIITWNSMIGGLAQHGCGLEAFSLFRQMQREG 303

Query: 348 TDSVDSITLVSIL-TASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
               D+IT V+IL  A     AL+   ++H  A + G      V N L+  Y+KCG++D 
Sbjct: 304 L-VPDAITYVNILNNACASTGALQWVRKVHDDAAKVGLDFDVRVGNALVHMYAKCGSMDD 362

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           A  VF  M   RDVVSW  +I G   +G G  A +L+ +M   G VP+ +TYLSILN   
Sbjct: 363 ARRVFYGM-VDRDVVSWTVMIGGLAQHGFGREAFSLFLQMQREGFVPNLTTYLSILN--- 418

Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHY----GCVVDLLARAGCLSDASGLAGKLLEGMG 522
             G  + G + + + +  + V    + +      ++ + A+ G + +A  L    +E   
Sbjct: 419 --GKASTGALEWVKEVHTHAVNAELDSHLRVGNALIHMYAKCGSIENAR-LVFDRMEDRD 475

Query: 523 PNIWRALLSG 532
              W A++ G
Sbjct: 476 IISWNAMIGG 485



 Score =  206 bits (523), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 122/426 (28%), Positives = 221/426 (51%), Gaps = 24/426 (5%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + L+  Y +SG IK+A  +FD++ E+N+++W+ +I G + +G   ++   F  M   GL+
Sbjct: 246 TALVHMYARSGSIKDARLVFDKMTERNIITWNSMIGGLAQHGCGLEAFSLFRQMQREGLV 305

Query: 69  PNSFTMVGVLV-AAAGLQNLELARSIHGLMVKFGLESDL--------------------- 106
           P++ T V +L  A A    L+  R +H    K GL+ D+                     
Sbjct: 306 PDAITYVNILNNACASTGALQWVRKVHDDAAKVGLDFDVRVGNALVHMYAKCGSMDDARR 365

Query: 107 -FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
            F G+ +  +VS   ++ G   +   ++A  LF   +  G VPN  T L+++ G  + G+
Sbjct: 366 VFYGMVDRDVVSWTVMIGGLAQHGFGREAFSLFLQMQREGFVPNLTTYLSILNGKASTGA 425

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
               + +H   +   L   + V N+++ MY+    ++ A  +F  ME +D+ISW  M+G 
Sbjct: 426 LEWVKEVHTHAVNAELDSHLRVGNALIHMYAKCGSIENARLVFDRMEDRDIISWNAMIGG 485

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
                +  +A   F EM++   I D   L+++++  A    L R K++H+  +  GL+S+
Sbjct: 486 LAQNGHGREAFSHFLEMQREGFIPDAATLVSILNACASTRALDRVKEVHSHALEAGLESD 545

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           LR+ ++++  Y+KCG +D +R VF  +  + +++W  +I G  Q+G   EA + F++M Q
Sbjct: 546 LRVGSALVHTYAKCGRIDDARLVFEGMASRDIITWNVMIGGLAQHGREHEAFSLFLQM-Q 604

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
           +     D+IT +SIL  +  + ALE   ++H  A  AGF     V + L+  Y+KCG++D
Sbjct: 605 DVGFVPDAITYLSILGGNVSIEALEWVKEVHRHAVRAGFDTDPRVSSALVHMYTKCGDID 664

Query: 406 LAYIVF 411
            A + F
Sbjct: 665 NAKLHF 670



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 101/224 (45%), Gaps = 12/224 (5%)

Query: 350 SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYI 409
           S+DS T V IL    +   L +  Q+H    ++   ++  V N L+S Y +CG +     
Sbjct: 2   SIDSYTYVDILQKVFKHKDLVLAKQVHECIIKSEMEQHPYVANKLMSIYIRCGRLQNTRE 61

Query: 410 VFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAG 469
           VF+ +   ++V +W  +I GY  N H E A+ +Y+KM + G  P+  T+ +IL AC    
Sbjct: 62  VFDTL-VEKNVFNWTIMIGGYAENNHFEDAIEVYNKMRQNGVQPNEITFFNILKACTSPM 120

Query: 470 LTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN---IW 526
               G  I +  I     +        ++ + AR G + DA      +  GM       W
Sbjct: 121 ALKWGRKIHDH-IRHAGFQSDLRLGNALIHMYARCGSMDDAR----LVFNGMVDRDIITW 175

Query: 527 RALLSGCVLHVGRFQDAEALRSGSQKKGIIK--IPGISFLNSTS 568
             ++   V H GR  +A +L    Q++G +      +S LN+ +
Sbjct: 176 NVMIGRLVQH-GRGHEAFSLFLQMQREGFVPDTTTYLSMLNANA 218


>gi|307136370|gb|ADN34182.1| pentatricopeptide repeat-containing protein [Cucumis melo subsp.
           melo]
          Length = 1131

 Score =  265 bits (676), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 174/618 (28%), Positives = 302/618 (48%), Gaps = 63/618 (10%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y  S L++ Y K  K+  A+ +F+ + E+N+V W+ ++ G++ NG  ++ M+ FS+M   
Sbjct: 345 YVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSYMKRH 404

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF------------------ 107
           G  P+ FT   +  A A L  L+    +H +M+K    S+LF                  
Sbjct: 405 GPQPDEFTFTSIFSACASLHYLDFGGQLHTVMIKNKFTSNLFVANALVDMYAKSGALKEA 464

Query: 108 ----EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
               E +K    VS NAI+ G++  +   +A  +F     +G++P+ V++ +++  C  +
Sbjct: 465 RKQFEFMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANV 524

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
                 +  H L +K+GL       +S++DMY     + AA  +F  M  ++V+S   ++
Sbjct: 525 KEFKQGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPYRNVVSINALI 584

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV-LGGL 282
             +    +  +A+ +F+E++   +    V    L+        L  G+Q+H QV+  G L
Sbjct: 585 AGYT-MSHLEEAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGFL 643

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISGYVQNGCAREALNQFI 341
            S   +  S++ MY        S ++F+++   K LV WTA+ISGY Q     +AL  + 
Sbjct: 644 SSSEMVCVSLLCMYMNSQRFADSETLFSELQYPKGLVVWTALISGYAQQNHHEKALQFYQ 703

Query: 342 KMRQEKTDSV--DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
            MR   +D++  D  T  S+L A   +++L+   ++H + F  GF       + LI  Y+
Sbjct: 704 HMR---SDNILPDQATFASVLRACAGMSSLQTGQEVHSLIFHTGFNMDEITCSSLIDMYA 760

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           KCG+V  +  VF EM     V+SWN++I G   NG+ E AL ++ +M +   +PD  T+L
Sbjct: 761 KCGDVKGSLQVFHEMPRRNSVISWNSMIVGLAKNGYAEEALEIFKQMEQQSIIPDEVTFL 820

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519
            +L+AC HAG  ++G  +F+ M+   K++P  +H GC+VD+L R G L++A     KL  
Sbjct: 821 GVLSACSHAGRVSEGRKVFDLMVNNYKLQPRVDHLGCMVDILGRWGFLNEAEEFINKLGC 880

Query: 520 GMGPNIWRALLSGC---------------------------VLHVGRFQDAE------AL 546
              P +W  LL  C                           VL  G + ++E      +L
Sbjct: 881 KADPMLWSTLLGACRKHGDEVRGKRAANKLMELKPQSSSSYVLLSGLYAESENWSGADSL 940

Query: 547 RSGSQKKGIIKIPGISFL 564
           R   + KG+ K+PG S++
Sbjct: 941 RREMKLKGVKKLPGYSWI 958



 Score =  198 bits (503), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 131/475 (27%), Positives = 226/475 (47%), Gaps = 59/475 (12%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTM 74
           Y K G +  A+  F  + +K+V +W+ V+  Y  +G     +++F  M   G+ PN FT 
Sbjct: 86  YVKCGNVDFAQKAFSRLEKKDVFAWNSVLSMYLDHGLFATVVQSFVCMWNHGVRPNEFTF 145

Query: 75  VGVLVAAAGLQNLELARSIHGLMVK--FGLES-------DL-------------FEGLKN 112
             VL A +GLQ++   + +H  + K  FG  S       D+             F+G  N
Sbjct: 146 AMVLSACSGLQDINYGKQVHCGVFKMGFGFRSFCQGGLIDMYAKCRNLRDARLVFDGALN 205

Query: 113 PYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELI 172
              VS   ++AG++ +    +AV +F+  +  G VP+ + ++TVI   VALG        
Sbjct: 206 LDTVSWTTLIAGYVRDGFPMEAVKVFDKMQRVGHVPDQIALVTVINAYVALGR------- 258

Query: 173 HGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYA 232
                                       L  A ++F ++   +V++W  M+       +A
Sbjct: 259 ----------------------------LADARKLFTQIPNPNVVAWNVMISGHAKRGFA 290

Query: 233 GDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSI 292
            +A+  F E++K+ +     +L +++S  A L  L  G  +HAQ +  GL   + + +++
Sbjct: 291 EEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLNYGSMVHAQAIKEGLDDNVYVGSAL 350

Query: 293 IAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVD 352
           + MY+KC  +D+++ VFN + E+++V W A++ G+ QNG A+E +  F  M++      D
Sbjct: 351 VNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSYMKRHGPQP-D 409

Query: 353 SITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFE 412
             T  SI +A   L  L+   QLH +  +  F     V N L+  Y+K G +  A   FE
Sbjct: 410 EFTFTSIFSACASLHYLDFGGQLHTVMIKNKFTSNLFVANALVDMYAKSGALKEARKQFE 469

Query: 413 EMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
            M  + D VSWN II GY    + + A  ++ +M   G +PD  +  SI++AC +
Sbjct: 470 FMK-IHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACAN 523



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 145/524 (27%), Positives = 250/524 (47%), Gaps = 20/524 (3%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+  Y K   +++A  +FD     + VSW+ +I GY  +GF  +++K F  M   G +P+
Sbjct: 183 LIDMYAKCRNLRDARLVFDGALNLDTVSWTTLIAGYVRDGFPMEAVKVFDKMQRVGHVPD 242

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKL 130
              +V V+ A   L  L  AR              LF  + NP +V+ N +++G      
Sbjct: 243 QIALVTVINAYVALGRLADARK-------------LFTQIPNPNVVAWNVMISGHAKRGF 289

Query: 131 FQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNS 190
            ++A+  F   + +GL     ++ +V+    +L       ++H   IK GL  +V V ++
Sbjct: 290 AEEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLNYGSMVHAQAIKEGLDDNVYVGSA 349

Query: 191 VLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICD 250
           +++MY+    +DAA Q+F  +  ++++ W  M+G F     A + ++ F  M++     D
Sbjct: 350 LVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSYMKRHGPQPD 409

Query: 251 TVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFN 310
                ++ S  A L  L  G QLH  ++     S L ++N+++ MY+K G L  +R  F 
Sbjct: 410 EFTFTSIFSACASLHYLDFGGQLHTVMIKNKFTSNLFVANALVDMYAKSGALKEARKQFE 469

Query: 311 QITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV--DSITLVSILTASGELAA 368
            +     VSW AII GYVQ     EA   F   R+  ++ V  D ++L SI++A   +  
Sbjct: 470 FMKIHDNVSWNAIIVGYVQEEYNDEA---FFMFRRMVSNGVLPDEVSLASIVSACANVKE 526

Query: 369 LEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIY 428
            +   Q H +  + G        + LI  Y KCG V  A  VF  M + R+VVS N +I 
Sbjct: 527 FKQGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPY-RNVVSINALIA 585

Query: 429 GYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVK 488
           GY ++ H E A+ L+ ++   G  P   T+  +L+ C  A + N G  I  Q+++   + 
Sbjct: 586 GYTMS-HLEEAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGFLS 644

Query: 489 PSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSG 532
            S+     ++ +   +   +D+  L  +L    G  +W AL+SG
Sbjct: 645 SSEMVCVSLLCMYMNSQRFADSETLFSELQYPKGLVVWTALISG 688



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 133/520 (25%), Positives = 230/520 (44%), Gaps = 81/520 (15%)

Query: 23  EAENLFDEIPEK--NVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVA 80
           +A NLF+E P+     +S + VIH         KS+K                 +GV   
Sbjct: 41  QAHNLFNEKPKAVLQALSTAKVIH--------SKSLK-----------------IGV--- 72

Query: 81  AAGLQNLELARSIHGLMVKFG---LESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLL 137
             GL+ L L   I  L VK G        F  L+   + + N++++ ++++ LF   V  
Sbjct: 73  --GLKGL-LGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSMYLDHGLFATVVQS 129

Query: 138 FNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSC 197
           F      G+ PN  T   V+  C  L      + +H    K+G          ++DMY+ 
Sbjct: 130 FVCMWNHGVRPNEFTFAMVLSACSGLQDINYGKQVHCGVFKMGFGFRSFCQGGLIDMYAK 189

Query: 198 LMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNL 257
             +L  A  +F      D +SWT ++  +V   +  +A+K+F +M++   + D +AL+ +
Sbjct: 190 CRNLRDARLVFDGALNLDTVSWTTLIAGYVRDGFPMEAVKVFDKMQRVGHVPDQIALVTV 249

Query: 258 ISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSL 317
           I                               N+ +A+    G L  +R +F QI   ++
Sbjct: 250 I-------------------------------NAYVAL----GRLADARKLFTQIPNPNV 274

Query: 318 VSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHG 377
           V+W  +ISG+ + G A EA++ F+++++    +  S +L S+L+A   L+ L     +H 
Sbjct: 275 VAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRS-SLGSVLSAIASLSMLNYGSMVHA 333

Query: 378 IAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGE 437
            A + G      V + L++ Y+KC  +D A  VF  +G  R++V WN ++ G+  NG  +
Sbjct: 334 QAIKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLG-ERNIVLWNAMLGGFAQNGLAQ 392

Query: 438 TALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCV 497
             +  +  M   G  PD  T+ SI +AC      + G  +   MI +NK   +      +
Sbjct: 393 EVMEFFSYMKRHGPQPDEFTFTSIFSACASLHYLDFGGQLHTVMI-KNKFTSNLFVANAL 451

Query: 498 VDLLARAGCLSDASGLAGKLLEGMG--PNI-WRALLSGCV 534
           VD+ A++G L +A     K  E M    N+ W A++ G V
Sbjct: 452 VDMYAKSGALKEAR----KQFEFMKIHDNVSWNAIIVGYV 487



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 119/242 (49%), Gaps = 6/242 (2%)

Query: 249 CDTVALLNLIS--VNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSR 306
           C  +   NL +    A+L  L   K +H++ +  G+  +  L N I+ +Y KCG++D ++
Sbjct: 37  CRRIQAHNLFNEKPKAVLQALSTAKVIHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQ 96

Query: 307 SVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGEL 366
             F+++ +K + +W +++S Y+ +G     +  F+ M        +  T   +L+A   L
Sbjct: 97  KAFSRLEKKDVFAWNSVLSMYLDHGLFATVVQSFVCMWNHGVRP-NEFTFAMVLSACSGL 155

Query: 367 AALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLR-DVVSWNT 425
             +    Q+H   F+ GF      Q  LI  Y+KC N+  A +VF+  G L  D VSW T
Sbjct: 156 QDINYGKQVHCGVFKMGFGFRSFCQGGLIDMYAKCRNLRDARLVFD--GALNLDTVSWTT 213

Query: 426 IIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEEN 485
           +I GY  +G    A+ ++ KM   G VPD    ++++NA    G   D   +F Q+   N
Sbjct: 214 LIAGYVRDGFPMEAVKVFDKMQRVGHVPDQIALVTVINAYVALGRLADARKLFTQIPNPN 273

Query: 486 KV 487
            V
Sbjct: 274 VV 275


>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 597

 Score =  265 bits (676), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 157/497 (31%), Positives = 258/497 (51%), Gaps = 35/497 (7%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F+ +    +   N ++ G+ +    ++A+ L++   G+GL P+  T   V+R C  L +
Sbjct: 84  MFDQMPKRDVFLWNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVLSA 143

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
               + +H   +K G   DV V +S++ MYS   +      +F EM  ++++SWT ++  
Sbjct: 144 LREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAG 203

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +V   Y  + L +FREM  S    + V L++++   A L  L  GK +H   +  G+  +
Sbjct: 204 YVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDPD 263

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           + L+N++IA+Y KCG+++++RS+F+ +  ++LVSW A+I+ Y QN     A+  F +M+ 
Sbjct: 264 VSLTNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQA 323

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
           EK D  D IT+VS+++A   L AL     +H +    G     S+ N LI  Y+KCGN+D
Sbjct: 324 EKVD-FDYITMVSVISACASLGALNTGRWMHELVKRKGLEINVSITNALIDMYAKCGNID 382

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
           LA  VFE +   R VVSW ++I     +GHGE AL L+ +M + G  P+S T+ ++  AC
Sbjct: 383 LAREVFERLP-CRSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTAC 441

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI 525
            H+GL  +G   F  M+ +  + P  EH  C+VDLL RAG L +A     K+      ++
Sbjct: 442 RHSGLVEEGRKHFESMMRDYSIMPGVEHCACMVDLLGRAGSLMEAYEFIDKMPVEPDVSV 501

Query: 526 WRALLSGCVLH---------------------------------VGRFQDAEALRSGSQK 552
           W ALL  C +H                                  GR++DA  LR   ++
Sbjct: 502 WGALLGSCRIHSNLELAELVAEKLFLLDPQTVTFYVLMSNIYAEAGRWEDAARLRKLMEE 561

Query: 553 KGIIKIPGISFLNSTSR 569
           + + KIPG S +    R
Sbjct: 562 RELKKIPGHSLVEVNRR 578



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 138/498 (27%), Positives = 258/498 (51%), Gaps = 36/498 (7%)

Query: 24  AENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAG 83
           A  +FD++P+++V  W+ +I GY+  G  E+++  +S+M  +GL P+++T   V+ + A 
Sbjct: 81  ARKMFDQMPKRDVFLWNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAV 140

Query: 84  LQNLELARSIHGLMVKFGLESDLF--EGLKNPY--------------------LVSCNAI 121
           L  L   + +H  +VK G +SD+F    L   Y                    +VS  A+
Sbjct: 141 LSALREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAV 200

Query: 122 VAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGL 181
           +AG++ N+ F++ + +F    GSG  PNAVT+++V+  C  L    L +LIHG  IKLG+
Sbjct: 201 IAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGV 260

Query: 182 ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFRE 241
             DVS+ N+++ +Y    +++ A  +F  M  ++++SW  M+  +       +A+K+FR 
Sbjct: 261 DPDVSLTNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRR 320

Query: 242 MRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGD 301
           M+  ++  D + ++++IS  A LG L  G+ +H  V   GL+  + ++N++I MY+KCG+
Sbjct: 321 MQAEKVDFDYITMVSVISACASLGALNTGRWMHELVKRKGLEINVSITNALIDMYAKCGN 380

Query: 302 LDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILT 361
           +D +R VF ++  +S+VSWT++I     +G   +AL  F +M+ E     +S T  ++ T
Sbjct: 381 IDLAREVFERLPCRSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKP-NSFTFAAVFT 439

Query: 362 ASGELAALEICLQLHGIAFEAGFPRYRSVQN-----CLISSYSKCGNVDLAYIVFEEMGF 416
           A      +E   +     FE+    Y  +       C++    + G++  AY   ++M  
Sbjct: 440 ACRHSGLVEEGRK----HFESMMRDYSIMPGVEHCACMVDLLGRAGSLMEAYEFIDKMPV 495

Query: 417 LRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL-NACGHAGLTNDGL 475
             DV  W  ++    ++ + E A  +  K+      P + T+  ++ N    AG   D  
Sbjct: 496 EPDVSVWGALLGSCRIHSNLELAELVAEKLFLLD--PQTVTFYVLMSNIYAEAGRWEDAA 553

Query: 476 VIFNQMIEENKVKPSQEH 493
            +  +++EE ++K    H
Sbjct: 554 RL-RKLMEERELKKIPGH 570



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 109/388 (28%), Positives = 201/388 (51%), Gaps = 12/388 (3%)

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMD-LDAAIQIFREMECKDVISWTRMMGLFVDFE 230
           IH L +  G   ++ ++  ++    CL   +D A ++F +M  +DV  W  ++  + D  
Sbjct: 48  IHALVVTNGCGQNLLLSTKLIITACCLAPTMDYARKMFDQMPKRDVFLWNTLIRGYADAG 107

Query: 231 YAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSN 290
              +AL ++  M  + +  D      ++   A+L  L+ GK++H  +V  G  S++ + +
Sbjct: 108 PCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVLSALREGKEVHCNIVKHGFDSDVFVQS 167

Query: 291 SIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDS 350
           S++AMYS+ G+      VF ++  +++VSWTA+I+GYVQN   +E L  F +M    T  
Sbjct: 168 SLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAGYVQNRYFKEGLGVFREMVGSGTQP 227

Query: 351 VDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIV 410
            +++TLVS+L A   L  L +   +HG   + G     S+ N LI+ Y KCGNV+ A  +
Sbjct: 228 -NAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDPDVSLTNALIALYGKCGNVETARSL 286

Query: 411 FEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGL 470
           F+ M  ++++VSWN +I  Y  N  G  A+ L+ +M       D  T +S+++AC   G 
Sbjct: 287 FDGM-VVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDYITMVSVISACASLGA 345

Query: 471 TNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN---IWR 527
            N G  + +++++   ++ +      ++D+ A+ G +     LA ++ E +       W 
Sbjct: 346 LNTGRWM-HELVKRKGLEINVSITNALIDMYAKCGNID----LAREVFERLPCRSVVSWT 400

Query: 528 ALLSGCVLHVGRFQDAEALRSGSQKKGI 555
           +++  C  H G  +DA  L S  + +G+
Sbjct: 401 SMIGACASH-GHGEDALKLFSRMKDEGV 427



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 87/262 (33%), Positives = 142/262 (54%), Gaps = 22/262 (8%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  S L++ Y +SG+    E +F E+  +N+VSW+ VI GY  N + ++ +  F  M+
Sbjct: 162 DVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAGYVQNRYFKEGLGVFREMV 221

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
            SG  PN+ T+V VL A AGL+ L L + IHG  +K G++ D                  
Sbjct: 222 GSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDPDVSLTNALIALYGKCGNVE 281

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               LF+G+    LVS NA++A +  N     AV LF   +   +  + +TM++VI  C 
Sbjct: 282 TARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDYITMVSVISACA 341

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
           +LG+      +H L  + GL ++VS+ N+++DMY+   ++D A ++F  + C+ V+SWT 
Sbjct: 342 SLGALNTGRWMHELVKRKGLEINVSITNALIDMYAKCGNIDLAREVFERLPCRSVVSWTS 401

Query: 222 MMGLFVDFEYAGDALKIFREMR 243
           M+G      +  DALK+F  M+
Sbjct: 402 MIGACASHGHGEDALKLFSRMK 423



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 42/73 (57%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ L+  Y K G I  A  +F+ +P ++VVSW+ +I   + +G  E ++K FS M   G+
Sbjct: 368 TNALIDMYAKCGNIDLAREVFERLPCRSVVSWTSMIGACASHGHGEDALKLFSRMKDEGV 427

Query: 68  LPNSFTMVGVLVA 80
            PNSFT   V  A
Sbjct: 428 KPNSFTFAAVFTA 440


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  264 bits (675), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 168/591 (28%), Positives = 290/591 (49%), Gaps = 90/591 (15%)

Query: 10  KLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM---LSG 66
           KL+S Y   G +KE   +FD + +KNV  W+ ++  Y+  G  ++S+  F  M+   + G
Sbjct: 139 KLVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEG 198

Query: 67  LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFI 126
             P S                                S+LF+ L +  ++S N++++G++
Sbjct: 199 KRPES-------------------------------ASELFDKLCDRDVISWNSMISGYV 227

Query: 127 NNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVS 186
           +N L ++ + ++      G+  +  T+++V+ GC   G+ +L + +H L IK      ++
Sbjct: 228 SNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSTFERRIN 287

Query: 187 VNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSR 246
            +N++LDMYS   DLD A+++F +M  ++V+SWT M+  +     +  A+++ ++M K  
Sbjct: 288 FSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEG 347

Query: 247 IICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSR 306
           +  D VA  +++   A  G L  GK +H  +    ++S L + N+++ MY+KCG +D + 
Sbjct: 348 VKLDVVATTSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYTKCGSMDGAN 407

Query: 307 SVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGEL 366
           SVF+ +  K ++SW  +I                           DS T+  IL A   L
Sbjct: 408 SVFSTMVVKDIISWNTMIGEL----------------------KPDSRTMACILPACASL 445

Query: 367 AALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTI 426
           +ALE   ++HG     G+   R V N L+  Y KCG + LA ++F +M   +D+VSW  +
Sbjct: 446 SALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLF-DMIPSKDLVSWTVM 504

Query: 427 IYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENK 486
           I GYG++G+G  A+A +++M + G  PD  +++SIL AC H+GL   G   F  M  +  
Sbjct: 505 ISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFN 564

Query: 487 VKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH---------- 536
           ++P  EHY C+VDLL+R G LS A      L       IW ALL GC ++          
Sbjct: 565 IEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRIYHDIELAEKVA 624

Query: 537 -----------------------VGRFQDAEALRSGSQKKGIIKIPGISFL 564
                                    ++++ + +R    KKG+ K PG S++
Sbjct: 625 ERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWI 675



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 152/300 (50%), Gaps = 27/300 (9%)

Query: 234 DALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSII 293
           D  K+   ++ + +  D V  L L+S+ A  GDLK G+++   +     +  + L N ++
Sbjct: 117 DGKKVHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTME----KKNVYLWNFMV 172

Query: 294 AMYSKCGDL--------------------DSSRSVFNQITEKSLVSWTAIISGYVQNGCA 333
           + Y+K GD                     +S+  +F+++ ++ ++SW ++ISGYV NG  
Sbjct: 173 SEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLT 232

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC 393
              L  + +M     D VD  T++S+L        L +   +H +A ++ F R  +  N 
Sbjct: 233 ERGLEIYKQMMYLGID-VDLATIISVLVGCANSGTLSLGKAVHSLAIKSTFERRINFSNT 291

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           L+  YSKCG++D A  VFE+MG  R+VVSW ++I GY  +G  + A+ L  +M + G   
Sbjct: 292 LLDMYSKCGDLDGALRVFEKMG-ERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKL 350

Query: 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL 513
           D     SIL+AC  +G  ++G  + +  I+ N ++ +      ++D+  + G +  A+ +
Sbjct: 351 DVVATTSILHACARSGSLDNGKDV-HDYIKANNMESNLFVCNALMDMYTKCGSMDGANSV 409



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 134/265 (50%), Gaps = 3/265 (1%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ LL  Y K G +  A  +F+++ E+NVVSW+ +I GY+ +G  + +++    M   G+
Sbjct: 289 SNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGV 348

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPYLVSCNAIVAGF 125
             +      +L A A   +L+  + +H  +    +ES+LF    L + Y    +   A  
Sbjct: 349 KLDVVATTSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYTKCGSMDGANS 408

Query: 126 INNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDV 185
           + + +  + ++ +N   G  L P++ TM  ++  C +L +    + IHG  ++ G   D 
Sbjct: 409 VFSTMVVKDIISWNTMIGE-LKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDR 467

Query: 186 SVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKS 245
            V N+++D+Y     L  A  +F  +  KD++SWT M+  +    Y  +A+  F EMR +
Sbjct: 468 HVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMISGYGMHGYGNEAIATFNEMRDA 527

Query: 246 RIICDTVALLNLISVNAILGDLKRG 270
            I  D V+ ++++   +  G L++G
Sbjct: 528 GIEPDEVSFISILYACSHSGLLEQG 552



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 49/79 (62%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + ++ L+  Y K G +  A  LFD IP K++VSW+++I GY ++G+  +++  F+ M 
Sbjct: 466 DRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMISGYGMHGYGNEAIATFNEMR 525

Query: 64  LSGLLPNSFTMVGVLVAAA 82
            +G+ P+  + + +L A +
Sbjct: 526 DAGIEPDEVSFISILYACS 544


>gi|242088929|ref|XP_002440297.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
 gi|241945582|gb|EES18727.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
          Length = 869

 Score =  264 bits (675), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 164/554 (29%), Positives = 285/554 (51%), Gaps = 37/554 (6%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           +LS   + G+   A  +F ++PE++V SW++++ GY   G  E+++  +  MM +G+ P+
Sbjct: 135 MLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKAGLLEEALDLYHRMMWAGVRPD 194

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGL--ESDLFEGLKNPY-------------- 114
            +T   VL +  G+ +  + R +H  +++FG   E D+   L   Y              
Sbjct: 195 VYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFAEEVDVLNALMTMYAKCGDVVAARKVFD 254

Query: 115 ------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
                  +S NA++AG   N      + LF       + PN +T+ +V      L     
Sbjct: 255 SMAVMDCISWNAMIAGHFENGECNAGLELFLTMLQDEVQPNLMTITSVTVASGLLSDITF 314

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
            + +HGL +K G   DV+  NS++ MY+ L  +  A  +F  M+ +D +SWT M+  +  
Sbjct: 315 AKEMHGLAVKRGFATDVAFCNSLIQMYASLGMMGQARTVFSRMDTRDAMSWTAMISGYEK 374

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
             +   AL+++  M  + +  D + + + ++  A LG L  G +LH      G  S + +
Sbjct: 375 NGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSLDVGVKLHELAESKGFMSYVVV 434

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
           +N+++ MY+K   +D +  VF  + EK +VSW+++I+G+  N    EAL  F  M  +  
Sbjct: 435 TNALLEMYAKSKRIDKAIEVFKCMPEKDVVSWSSMIAGFCFNHRNFEALYYFRHMLADVK 494

Query: 349 DSVDSITLVSILTASGELAALEICLQLH------GIAFEAGFPRYRSVQNCLISSYSKCG 402
              +S+T ++ L A     AL    ++H      GIA+E   P      N LI  Y KCG
Sbjct: 495 P--NSVTFIAALAACAATGALRSGKEIHAHVLRCGIAYEGYLP------NALIDLYVKCG 546

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
               A+  F   G  +DVVSWN +I G+  +G+GETAL+ +++M + GE PD  T++++L
Sbjct: 547 QTGYAWAQFCAHG-AKDVVSWNIMIAGFVAHGNGETALSFFNQMVKIGECPDEVTFVALL 605

Query: 463 NACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMG 522
            AC   G+ ++G  +F+ M ++  + P+ +HY C+VDLL+R G L++A     ++     
Sbjct: 606 CACSRGGMVSEGWELFHSMTDKYSIVPNLKHYACMVDLLSRVGQLTEAYNFINEMPITPD 665

Query: 523 PNIWRALLSGCVLH 536
             +W ALL+GC +H
Sbjct: 666 AAVWGALLNGCRIH 679



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 106/376 (28%), Positives = 192/376 (51%), Gaps = 6/376 (1%)

Query: 87  LELARSIHGLMVKFGLESD---LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRG 143
           L L  ++  ++V+FG       +F  +    + S N +V G+    L ++A+ L++    
Sbjct: 129 LRLGNAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKAGLLEEALDLYHRMMW 188

Query: 144 SGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDA 203
           +G+ P+  T   V+R C  +    +   +H   ++ G   +V V N+++ MY+   D+ A
Sbjct: 189 AGVRPDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFAEEVDVLNALMTMYAKCGDVVA 248

Query: 204 AIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAI 263
           A ++F  M   D ISW  M+    +       L++F  M +  +  + + + ++   + +
Sbjct: 249 ARKVFDSMAVMDCISWNAMIAGHFENGECNAGLELFLTMLQDEVQPNLMTITSVTVASGL 308

Query: 264 LGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAI 323
           L D+   K++H   V  G  +++   NS+I MY+  G +  +R+VF+++  +  +SWTA+
Sbjct: 309 LSDITFAKEMHGLAVKRGFATDVAFCNSLIQMYASLGMMGQARTVFSRMDTRDAMSWTAM 368

Query: 324 ISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG 383
           ISGY +NG   +AL  +  M      S D IT+ S L A   L +L++ ++LH +A   G
Sbjct: 369 ISGYEKNGFPDKALEVYALMEVNNV-SPDDITIASALAACACLGSLDVGVKLHELAESKG 427

Query: 384 FPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALY 443
           F  Y  V N L+  Y+K   +D A  VF+ M   +DVVSW+++I G+  N     AL  +
Sbjct: 428 FMSYVVVTNALLEMYAKSKRIDKAIEVFKCMP-EKDVVSWSSMIAGFCFNHRNFEALYYF 486

Query: 444 HKMTETGEVPDSSTYL 459
             M    + P+S T++
Sbjct: 487 RHMLADVK-PNSVTFI 501



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 122/457 (26%), Positives = 216/457 (47%), Gaps = 39/457 (8%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L++ Y K G +  A  +FD +   + +SW+ +I G+  NG     ++ F  M+   + PN
Sbjct: 236 LMTMYAKCGDVVAARKVFDSMAVMDCISWNAMIAGHFENGECNAGLELFLTMLQDEVQPN 295

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------------FE 108
             T+  V VA+  L ++  A+ +HGL VK G  +D+                      F 
Sbjct: 296 LMTITSVTVASGLLSDITFAKEMHGLAVKRGFATDVAFCNSLIQMYASLGMMGQARTVFS 355

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            +     +S  A+++G+  N    +A+ ++     + + P+ +T+ + +  C  LGS  +
Sbjct: 356 RMDTRDAMSWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSLDV 415

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
              +H L    G +  V V N++L+MY+    +D AI++F+ M  KDV+SW+ M+  F  
Sbjct: 416 GVKLHELAESKGFMSYVVVTNALLEMYAKSKRIDKAIEVFKCMPEKDVVSWSSMIAGFCF 475

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
                +AL  FR M  + +  ++V  +  ++  A  G L+ GK++HA V+  G+  E  L
Sbjct: 476 NHRNFEALYYFRHML-ADVKPNSVTFIAALAACAATGALRSGKEIHAHVLRCGIAYEGYL 534

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL---NQFIKMRQ 345
            N++I +Y KCG    + + F     K +VSW  +I+G+V +G    AL   NQ +K+  
Sbjct: 535 PNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIMIAGFVAHGNGETALSFFNQMVKI-- 592

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN-----CLISSYSK 400
              +  D +T V++L A      +    +L    F +   +Y  V N     C++   S+
Sbjct: 593 --GECPDEVTFVALLCACSRGGMVSEGWEL----FHSMTDKYSIVPNLKHYACMVDLLSR 646

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGE 437
            G +  AY    EM    D   W  ++ G  ++ H E
Sbjct: 647 VGQLTEAYNFINEMPITPDAAVWGALLNGCRIHRHVE 683



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 155/347 (44%), Gaps = 28/347 (8%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + L+  Y   G + +A  +F  +  ++ +SW+ +I GY  NGF +K+++ ++ M ++ + 
Sbjct: 335 NSLIQMYASLGMMGQARTVFSRMDTRDAMSWTAMISGYEKNGFPDKALEVYALMEVNNVS 394

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES----------------------DL 106
           P+  T+   L A A L +L++   +H L    G  S                      ++
Sbjct: 395 PDDITIASALAACACLGSLDVGVKLHELAESKGFMSYVVVTNALLEMYAKSKRIDKAIEV 454

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           F+ +    +VS ++++AGF  N    +A+  F       + PN+VT +  +  C A G+ 
Sbjct: 455 FKCMPEKDVVSWSSMIAGFCFNHRNFEALYYFRHMLAD-VKPNSVTFIAALAACAATGAL 513

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
              + IH   ++ G+  +  + N+++D+Y        A   F     KDV+SW  M+  F
Sbjct: 514 RSGKEIHAHVLRCGIAYEGYLPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIMIAGF 573

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQL-HAQVVLGGLQSE 285
           V       AL  F +M K     D V  + L+   +  G +  G +L H+      +   
Sbjct: 574 VAHGNGETALSFFNQMVKIGECPDEVTFVALLCACSRGGMVSEGWELFHSMTDKYSIVPN 633

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC 332
           L+    ++ + S+ G L  + +  N++     ++  A + G + NGC
Sbjct: 634 LKHYACMVDLLSRVGQLTEAYNFINEMP----ITPDAAVWGALLNGC 676



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 109/236 (46%), Gaps = 25/236 (10%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ LL  Y KS +I +A  +F  +PEK+VVSWS +I G+  N  + +++  F H ML+ +
Sbjct: 435 TNALLEMYAKSKRIDKAIEVFKCMPEKDVVSWSSMIAGFCFNHRNFEALYYFRH-MLADV 493

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL--ESDLFEGLKNPY----------- 114
            PNS T +  L A A    L   + IH  +++ G+  E  L   L + Y           
Sbjct: 494 KPNSVTFIAALAACAATGALRSGKEIHAHVLRCGIAYEGYLPNALIDLYVKCGQTGYAWA 553

Query: 115 ---------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
                    +VS N ++AGF+ +   + A+  FN     G  P+ VT + ++  C   G 
Sbjct: 554 QFCAHGAKDVVSWNIMIAGFVAHGNGETALSFFNQMVKIGECPDEVTFVALLCACSRGGM 613

Query: 166 RAL-CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME-CKDVISW 219
            +   EL H +T K  ++ ++     ++D+ S +  L  A     EM    D   W
Sbjct: 614 VSEGWELFHSMTDKYSIVPNLKHYACMVDLLSRVGQLTEAYNFINEMPITPDAAVW 669



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 15/157 (9%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y  + L+  Y K G+   A   F     K+VVSW+I+I G+  +G  E ++  F+ M+  
Sbjct: 533 YLPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIMIAGFVAHGNGETALSFFNQMVKI 592

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGF 125
           G  P+  T V +L A +            G MV  G E  LF  + + Y +  N      
Sbjct: 593 GECPDEVTFVALLCACS-----------RGGMVSEGWE--LFHSMTDKYSIVPNLKHYAC 639

Query: 126 INNKLFQ--QAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
           + + L +  Q    +NF     + P+A     ++ GC
Sbjct: 640 MVDLLSRVGQLTEAYNFINEMPITPDAAVWGALLNGC 676


>gi|113205417|gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative
           [Solanum demissum]
          Length = 819

 Score =  264 bits (675), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 163/558 (29%), Positives = 270/558 (48%), Gaps = 28/558 (5%)

Query: 5   PYNSSK----LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           PY ++     ++S Y KS  +  A  LF+ +  +N VSW+I+I GYS N   +++   ++
Sbjct: 73  PYRNTSSVNMMVSGYVKSRNLFRARELFESMFSRNEVSWTIMIGGYSQNNQPKEAFNLYT 132

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL--FEGLKNPYLVSC 118
            M  SG+ P+  T   +L        L+    IH  +++FG  + L  F  L + Y  +C
Sbjct: 133 EMCRSGVKPDHITFATLLSGFDDTTTLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTC 192

Query: 119 --------------------NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                               N ++ G+      ++A+ LF   R     P+  T   ++ 
Sbjct: 193 CLDIASQLFSEMPTKDSVSFNVMITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAMLG 252

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
             V        + IHGL IK   + D+ V N++LD YS    +D A  +F EM   D +S
Sbjct: 253 MSVGSEDVIFGQQIHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVS 312

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           +  ++  +        +  +F+ ++ +           ++SV AI  +L  G+Q HAQ V
Sbjct: 313 YNIIITGYAWNGQYEKSFDLFKRLQGTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQAV 372

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
           +    SE+++ N+++ MY+KC   + +  +F  +  ++ V WTAIIS YVQ G   EAL 
Sbjct: 373 VTTAVSEVQVGNALVDMYAKCEKFEDANRIFANLAYRNSVPWTAIISIYVQKGFHEEALK 432

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
            F +M +E     D  T  S L AS  LA++ +  QLH      G        + L+  Y
Sbjct: 433 MFKEMNRENVHG-DQATFASTLKASANLASVSLGKQLHSSVIRLGLLSSVFSGSVLVDMY 491

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
           + CG++  A  VF+EM   R++V WN +I  Y  NG  E   + +  M E+G  PDS ++
Sbjct: 492 ANCGSMKDAIEVFKEMP-DRNIVCWNALISAYSQNGDAEATFSSFADMIESGLYPDSVSF 550

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
           LS+L AC H GL    L  FN M +  K+ P ++HY  ++D+L R+G  ++A  L  ++ 
Sbjct: 551 LSVLTACSHRGLVEKALWYFNSMTQVYKLDPRRKHYATMIDVLCRSGRFNEAENLISEMP 610

Query: 519 EGMGPNIWRALLSGCVLH 536
                 +W ++L+ C +H
Sbjct: 611 FEPDEVMWSSVLNSCRIH 628



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 122/503 (24%), Positives = 235/503 (46%), Gaps = 36/503 (7%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+ +Y K+  +  A  LF E+P K+ VS++++I GY+  GF E+++K F  M      P+
Sbjct: 184 LVDSYCKTCCLDIASQLFSEMPTKDSVSFNVMITGYTKYGFREEALKLFMQMRNMDFQPS 243

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVK----------------------FGLESDLFE 108
            FT   +L  + G +++   + IHGL +K                        L  +LF+
Sbjct: 244 GFTFAAMLGMSVGSEDVIFGQQIHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFD 303

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            +     VS N I+ G+  N  ++++  LF   +G+          T++       + ++
Sbjct: 304 EMPELDGVSYNIIITGYAWNGQYEKSFDLFKRLQGTSFDRKNFPFATMLSVAAIELNLSM 363

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
               H   +    + +V V N+++DMY+     + A +IF  +  ++ + WT ++ ++V 
Sbjct: 364 GRQTHAQAVVTTAVSEVQVGNALVDMYAKCEKFEDANRIFANLAYRNSVPWTAIISIYVQ 423

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
             +  +ALK+F+EM +  +  D     + +  +A L  +  GKQLH+ V+  GL S +  
Sbjct: 424 KGFHEEALKMFKEMNRENVHGDQATFASTLKASANLASVSLGKQLHSSVIRLGLLSSVFS 483

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
            + ++ MY+ CG +  +  VF ++ ++++V W A+IS Y QNG A    + F  M  E  
Sbjct: 484 GSVLVDMYANCGSMKDAIEVFKEMPDRNIVCWNALISAYSQNGDAEATFSSFADM-IESG 542

Query: 349 DSVDSITLVSILTASGELAALEICL-------QLHGIAFEAGFPRYRSVQNCLISSYSKC 401
              DS++ +S+LTA      +E  L       Q++ +      PR R     +I    + 
Sbjct: 543 LYPDSVSFLSVLTACSHRGLVEKALWYFNSMTQVYKLD-----PR-RKHYATMIDVLCRS 596

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G  + A  +  EM F  D V W++++    ++ + + A     ++ +   + D++ Y+++
Sbjct: 597 GRFNEAENLISEMPFEPDEVMWSSVLNSCRIHKNQDLAKKAADQLFKMDALRDAAAYVNM 656

Query: 462 LNACGHAGLTNDGLVIFNQMIEE 484
            N    AG   +   +   M E 
Sbjct: 657 SNIYAEAGKWENAAKVKKAMRER 679



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/389 (21%), Positives = 180/389 (46%), Gaps = 28/389 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + ++ LL  Y K   I  A+NLFDE+PE + VS++I+I GY+ NG +EKS   F  + 
Sbjct: 278 DIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWNGQYEKSFDLFKRLQ 337

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMV----------------------KFG 101
            +     +F    +L  AA   NL + R  H   V                      KF 
Sbjct: 338 GTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQAVVTTAVSEVQVGNALVDMYAKCEKFE 397

Query: 102 LESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
             + +F  L     V   AI++ ++     ++A+ +F       +  +  T  + ++   
Sbjct: 398 DANRIFANLAYRNSVPWTAIISIYVQKGFHEEALKMFKEMNRENVHGDQATFASTLKASA 457

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            L S +L + +H   I+LGL+  V   + ++DMY+    +  AI++F+EM  ++++ W  
Sbjct: 458 NLASVSLGKQLHSSVIRLGLLSSVFSGSVLVDMYANCGSMKDAIEVFKEMPDRNIVCWNA 517

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG-KQLHAQVVLG 280
           ++  +     A      F +M +S +  D+V+ L++++  +  G +++     ++   + 
Sbjct: 518 LISAYSQNGDAEATFSSFADMIESGLYPDSVSFLSVLTACSHRGLVEKALWYFNSMTQVY 577

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISG---YVQNGCAREA 336
            L    +   ++I +  + G  + + ++ +++  E   V W+++++    +     A++A
Sbjct: 578 KLDPRRKHYATMIDVLCRSGRFNEAENLISEMPFEPDEVMWSSVLNSCRIHKNQDLAKKA 637

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGE 365
            +Q  KM   + D+   + + +I   +G+
Sbjct: 638 ADQLFKMDALR-DAAAYVNMSNIYAEAGK 665


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  264 bits (674), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 153/489 (31%), Positives = 266/489 (54%), Gaps = 17/489 (3%)

Query: 49  NGFHEKSM-KAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF 107
           N  H++ + +  + +++SGL  N F M  ++  ++ L  +  AR              LF
Sbjct: 65  NSTHKRHLDQIHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARK-------------LF 111

Query: 108 EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRA 167
           +    P +   NAI+  +  N +++  V ++ + R +G+ P+  T   V++ C  L    
Sbjct: 112 DEFCYPDVFMWNAIIRSYSRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFG 171

Query: 168 LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
           L  +IHG  IK G   DV V N ++ +Y+    +  A  +F  +  + ++SWT ++  + 
Sbjct: 172 LSCIIHGQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYA 231

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
               A +AL++F +MR + +  D +AL++++     + DL++G+ +H  V+  GL+ E  
Sbjct: 232 QNGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPA 291

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
           L  S+ A Y+KCG +  ++S F+Q+   +++ W A+ISGY +NG A EA+N F  M    
Sbjct: 292 LLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRN 351

Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
               DS+T+ S + AS ++ +LE+   +     ++ +     V   LI  Y+KCG+V+ A
Sbjct: 352 IKP-DSVTVRSAVLASAQVGSLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEFA 410

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
             VF+     +DVV W+ +I GYG++G G  A+ LYH M + G  P+  T++ +L AC H
Sbjct: 411 RRVFDRNS-DKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTACNH 469

Query: 468 AGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWR 527
           +GL  +G  +F+ M ++ ++ P  EHY CVVDLL RAG L +A     K+    G ++W 
Sbjct: 470 SGLVKEGWELFHCM-KDFEIVPRNEHYSCVVDLLGRAGYLGEACAFIMKIPIEPGVSVWG 528

Query: 528 ALLSGCVLH 536
           ALLS C ++
Sbjct: 529 ALLSACKIY 537



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 102/376 (27%), Positives = 192/376 (51%), Gaps = 23/376 (6%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           +KL++     G+I  A  LFDE    +V  W+ +I  YS N  +  +++ +  M  +G+ 
Sbjct: 92  TKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSYSRNNMYRDTVEMYRWMRWTGVH 151

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------L 106
           P+ FT   VL A   L +  L+  IHG ++K+G  SD                      +
Sbjct: 152 PDGFTFPYVLKACTELLDFGLSCIIHGQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVV 211

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           F+GL +  +VS  +I++G+  N    +A+ +F+  R +G+ P+ + +++++R    +   
Sbjct: 212 FDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDVDDL 271

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
                IHG  IK+GL  + ++  S+   Y+    +  A   F +M+  +VI W  M+  +
Sbjct: 272 EQGRSIHGFVIKMGLEDEPALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGY 331

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
               +A +A+ +F  M    I  D+V + + +  +A +G L+  + +   V      S++
Sbjct: 332 AKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKSNYGSDI 391

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            ++ S+I MY+KCG ++ +R VF++ ++K +V W+A+I GY  +G   EA+N +  M+Q 
Sbjct: 392 FVNTSLIDMYAKCGSVEFARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQA 451

Query: 347 KTDSVDSITLVSILTA 362
                D +T + +LTA
Sbjct: 452 GVFPND-VTFIGLLTA 466



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 148/292 (50%), Gaps = 22/292 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L++ Y K G I  A+ +FD +  + +VSW+ +I GY+ NG   ++++ FS M 
Sbjct: 188 DVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMR 247

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
            +G+ P+   +V +L A   + +LE  RSIHG ++K GLE +                  
Sbjct: 248 NNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLTAFYAKCGLVT 307

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                F+ +K   ++  NA+++G+  N   ++AV LF++     + P++VT+ + +    
Sbjct: 308 VAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLASA 367

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            +GS  L + +     K     D+ VN S++DMY+    ++ A ++F     KDV+ W+ 
Sbjct: 368 QVGSLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEFARRVFDRNSDKDVVMWSA 427

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQL 273
           M+  +       +A+ ++  M+++ +  + V  + L++     G +K G +L
Sbjct: 428 MIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTACNHSGLVKEGWEL 479


>gi|359485832|ref|XP_002268817.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950 [Vitis vinifera]
          Length = 1736

 Score =  263 bits (672), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 180/568 (31%), Positives = 291/568 (51%), Gaps = 38/568 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y SS L+S + + G   +A+N+F+++  +NVVS + ++ G       E + K F  M 
Sbjct: 316 DLYVSSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMK 375

Query: 64  -LSGLLPNSFTMVGVLVAAAGLQNLE----LARSIHGLMVKFGLESD---LFEGLKNPYL 115
            L G+  NS + V +L A +    LE      R +H  +++ GL  +   +  GL N Y 
Sbjct: 376 DLVGI--NSDSYVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYA 433

Query: 116 --------------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLT 155
                               VS N++++G   N+  + A   F+  R +G +P+  T+++
Sbjct: 434 KSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFHRMRRTGSMPSNFTLIS 493

Query: 156 VIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKD 215
            +  C +LG   L E IH   +KLGL  DVSV+N++L +Y+        +++F  M   D
Sbjct: 494 TLSSCASLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKVFSLMPEYD 553

Query: 216 VISWTRMMGLFVDFEYA-GDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
            +SW  ++G   D E +   A+K F +M +       V  +N++S  + L   +   Q+H
Sbjct: 554 QVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIH 613

Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE-KSLVSWTAIISGYVQNGCA 333
           A V+   L  +  + N++++ Y KCG+++    +F +++E +  VSW ++ISGY+ N   
Sbjct: 614 ALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELL 673

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC 393
            +A++    M Q K   +DS T  +IL+A   +A LE  +++H     A       V + 
Sbjct: 674 HKAMDLVWFMMQ-KGQRLDSFTFATILSACASVATLERGMEVHACGIRACLESDVVVGSA 732

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           L+  YSKCG +D A   FE M  LR+V SWN++I GY  +GHGE AL L+ +M   G+ P
Sbjct: 733 LVDMYSKCGRIDYASRFFELMP-LRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPP 791

Query: 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL 513
           D  T++ +L+AC H G   +G   F  M E  ++ P  EH+ C+VDLL RAG L +    
Sbjct: 792 DHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDF 851

Query: 514 AGKLLEGMGPN--IWRALLSGCVLHVGR 539
              +   M PN  IWR +L  C    GR
Sbjct: 852 INSM--PMKPNVLIWRTVLGACCRANGR 877



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 132/456 (28%), Positives = 225/456 (49%), Gaps = 39/456 (8%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ L++ Y + G +  A+ LFDE+  +N+V+W+ +I GY+ NG  +++   F  M+ +G 
Sbjct: 109 SNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGF 168

Query: 68  LPNSFTMVGVLVAA--AGLQNLELARSIHGLMVKFGLESD-------------------- 105
           +PN +     L A   +G    +L   IHGL+ K    SD                    
Sbjct: 169 IPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSAND 228

Query: 106 ---LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGL----VPNAVTMLTVIR 158
              +F+G+     +S N+I++ +        A  LF+  +  GL     PN  T  ++I 
Sbjct: 229 ARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNEYTFGSLIT 288

Query: 159 GCVALGSRALCELIHGLTI--KLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
              +     LC L   L    K G + D+ V+++++  ++     D A  IF +M  ++V
Sbjct: 289 TACSSVDFGLCVLEQMLARVEKSGFLQDLYVSSALVSGFARFGLTDDAKNIFEQMGVRNV 348

Query: 217 ISWTRMMGLFVDFEYAGDALKIFREMRK-SRIICDT-VALLNLISVNAILGDLKR-GKQL 273
           +S   +M   V  +    A K+F EM+    I  D+ V LL+  S  ++L + +R G+++
Sbjct: 349 VSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSDSYVVLLSAFSEFSVLEEGRRKGREV 408

Query: 274 HAQVVLGGL-QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC 332
           HA V+  GL  +++ + N ++ MY+K G +  + SVF  + EK  VSW ++ISG  QN C
Sbjct: 409 HAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNEC 468

Query: 333 AREALNQFIKMRQEKTDSVDS-ITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ 391
           + +A   F +MR  +T S+ S  TL+S L++   L  + +  Q+H    + G     SV 
Sbjct: 469 SEDAAESFHRMR--RTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVSVS 526

Query: 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
           N L++ Y++ G       VF  M    D VSWN++I
Sbjct: 527 NALLALYAETGCFTECLKVFSLMPEY-DQVSWNSVI 561



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 193/377 (51%), Gaps = 23/377 (6%)

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           +H  +IK G + ++ ++N+++++Y  + DL +A ++F EM  +++++W  ++  +     
Sbjct: 93  LHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGK 152

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGD--LKRGKQLHAQVVLGGLQSELRLS 289
             +A   FR+M ++  I +  A  + +      G    K G Q+H  +      S++ + 
Sbjct: 153 PDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVC 212

Query: 290 NSIIAMYSKCGD-LDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK- 347
           N +I+MY  C D  + +RSVF+ I  ++ +SW +IIS Y + G A  A + F  M++E  
Sbjct: 213 NVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGL 272

Query: 348 --TDSVDSITLVSILTASGELAALEICL--QLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
             +   +  T  S++T +       +C+  Q+     ++GF +   V + L+S +++ G 
Sbjct: 273 GFSFKPNEYTFGSLITTACSSVDFGLCVLEQMLARVEKSGFLQDLYVSSALVSGFARFGL 332

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
            D A  +FE+MG +R+VVS N ++ G      GE A  ++H+M +   + +S +Y+ +L+
Sbjct: 333 TDDAKNIFEQMG-VRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGI-NSDSYVVLLS 390

Query: 464 ACGHAGLTNDGLV--------IFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAG 515
           A     +  +G          +    + +NKV         +V++ A++G ++DA  +  
Sbjct: 391 AFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNG----LVNMYAKSGAIADACSVFE 446

Query: 516 KLLEGMGPNIWRALLSG 532
            ++E    + W +L+SG
Sbjct: 447 LMVEKDSVS-WNSLISG 462



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 82/268 (30%), Positives = 132/268 (49%), Gaps = 24/268 (8%)

Query: 268 KRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGY 327
           +  ++LH Q +  G    L LSN++I +Y + GDL S++ +F++++ ++LV+W  +ISGY
Sbjct: 88  EEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGY 147

Query: 328 VQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGE--LAALEICLQLHGIAFEAGFP 385
            QNG   EA  +F  M +      +     S L A  E   +  ++ +Q+HG+  +  + 
Sbjct: 148 TQNGKPDEACARFRDMVRAGFIP-NHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYG 206

Query: 386 RYRSVQNCLISSYSKC-GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH 444
               V N LIS Y  C  + + A  VF+ +G +R+ +SWN+II  Y   G   +A  L+ 
Sbjct: 207 SDVVVCNVLISMYGSCLDSANDARSVFDGIG-IRNSISWNSIISVYSRRGDAVSAYDLFS 265

Query: 445 KMTETG----EVPDSSTYLS-ILNACGHAGLTNDGLVIFNQMIEENKVKPS---QEHY-- 494
            M + G      P+  T+ S I  AC        GL +  QM+   +V+ S   Q+ Y  
Sbjct: 266 SMQKEGLGFSFKPNEYTFGSLITTACSSVDF---GLCVLEQMLA--RVEKSGFLQDLYVS 320

Query: 495 GCVVDLLARAGCLSDASGLAGKLLEGMG 522
             +V   AR G   DA      + E MG
Sbjct: 321 SALVSGFARFGLTDDAKN----IFEQMG 344



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 92/194 (47%), Gaps = 13/194 (6%)

Query: 374 QLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVN 433
           +LH  + + GF     + N LI+ Y + G++  A  +F+EM   R++V+W  +I GY  N
Sbjct: 92  ELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSN-RNLVTWACLISGYTQN 150

Query: 434 GHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGL-VIFNQMIEENKVKPSQE 492
           G  + A A +  M   G +P+   + S L AC  +G +   L V  + +I  +K +   +
Sbjct: 151 GKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLI--SKTRYGSD 208

Query: 493 HYGCVVDLLARAGCLSDASGLAGKLLEGMGPN---IWRALLSGCVLHVGRFQDAEALRSG 549
              C V +     CL D++  A  + +G+G      W +++S      G    A  L S 
Sbjct: 209 VVVCNVLISMYGSCL-DSANDARSVFDGIGIRNSISWNSIIS-VYSRRGDAVSAYDLFSS 266

Query: 550 SQKKGIIKIPGISF 563
            QK+G+    G SF
Sbjct: 267 MQKEGL----GFSF 276


>gi|222629201|gb|EEE61333.1| hypothetical protein OsJ_15451 [Oryza sativa Japonica Group]
          Length = 1037

 Score =  263 bits (672), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 173/620 (27%), Positives = 301/620 (48%), Gaps = 61/620 (9%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           S L++ Y K G   +A+N+FD   EKN+V W+ ++ G+  N   E++++ F +MM   L 
Sbjct: 374 SSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQ 433

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKN---------------- 112
            + FT V +L A   L +  L + +H + +K  ++  LF                     
Sbjct: 434 TDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKAL 493

Query: 113 ----PYL--VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
               PY   +S NA+  G   N   ++AV +    R  G+ P+ V+  T I  C  + + 
Sbjct: 494 FSLIPYKDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRAT 553

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
              + IH L IK G+  + +V +S++D+YS   D++++ +IF +++   ++    ++  F
Sbjct: 554 ETGKQIHCLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGF 613

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG-LQSE 285
           V      +A+++F+++ K  +   +V   +++S  +   +   GKQ+H   +  G L  +
Sbjct: 614 VQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCSGSLNSAIGKQVHCYTLKSGVLYDD 673

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITE-KSLVSWTAIISGYVQNGCAREALNQFIKMR 344
             L  S+  +Y K   L+ +  +  ++ + K+L  WTAIISGY QNG    +L  F +MR
Sbjct: 674 TLLGVSLAGIYLKSKMLEDANKLLTEMPDHKNLFEWTAIISGYAQNGYGDHSLVSFWRMR 733

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
                S D  T  S+L A  ++ A     ++HG+  ++GF  Y +  + LI  YSKCG+V
Sbjct: 734 HCNVRS-DEATFASVLKACSDVTAFADGKEIHGLITKSGFGSYETATSALIDMYSKCGDV 792

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
             ++  F+E+   +D++ WN++I G+  NG+ + AL L+ KM E    PD  T+L +L A
Sbjct: 793 ISSFEAFKELKNKQDIMPWNSMIVGFAKNGYADEALLLFQKMEELQIKPDEVTFLGVLIA 852

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C H+GL ++G   F  M +   + P  +HY C +DLL R G L +A     +L       
Sbjct: 853 CTHSGLISEGRHFFGSMRKVYGLTPRLDHYACFIDLLGRGGHLQEAQEAIDQLPFRPDGV 912

Query: 525 IWRALLSGCVLH---------------------------------VGRFQDAEALRSGSQ 551
           +W   L+ C +H                                  G + +A+  R   +
Sbjct: 913 VWATYLAACRMHKDEERGKIAARKLVELEPQYSSTYVLLSSLHAATGNWAEAKVTRESMR 972

Query: 552 KKGIIKIPGISFL---NSTS 568
           +KG+ K PG S++   N TS
Sbjct: 973 EKGVAKFPGCSWITVGNKTS 992



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 114/490 (23%), Positives = 214/490 (43%), Gaps = 60/490 (12%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS-GLLP 69
           L+  Y KSG++  A +      E+   + S ++  ++ +G     + AF ++  + G  P
Sbjct: 107 LVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHARSGSPGDVLGAFRYIRCTAGGRP 166

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF---------------------- 107
           + F +  VL A + +  L   R +H  +VK G  S +F                      
Sbjct: 167 DQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARRVF 226

Query: 108 EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRA 167
           +G+  P  +  ++++A +     +Q+A+ LF+     G  P+ VT++T+I    + G   
Sbjct: 227 DGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVTIISTLASSGR-- 284

Query: 168 LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
                                            LD A  + ++M     ++W  ++    
Sbjct: 285 ---------------------------------LDHATALLKKMPTPSTVAWNAVISGHA 311

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
                 + L ++++MR   +        +++S  A +     G+Q+HA  V+ GL + + 
Sbjct: 312 QSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVF 371

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
           + +S+I +Y+KCG    +++VF+   EK++V W A+++G+VQN    EA+  F  M +  
Sbjct: 372 VGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMR-Y 430

Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
           T   D  T VSIL A   L++  +  Q+H +  +        V N  +  YSK G +  A
Sbjct: 431 TLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDA 490

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
             +F  + + +D +SWN +  G   N   E A+ +  +M   G  PD  ++ + +NAC +
Sbjct: 491 KALFSLIPY-KDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSN 549

Query: 468 AGLTNDGLVI 477
              T  G  I
Sbjct: 550 IRATETGKQI 559



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 111/235 (47%), Gaps = 6/235 (2%)

Query: 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
           + LH +++ GG     RL +S++ +Y K G +  + S      E++  + ++++S + ++
Sbjct: 86  RALHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHARS 145

Query: 331 GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV 390
           G   + L  F  +R       D   L  +L+A   +  L    Q+H    ++GF      
Sbjct: 146 GSPGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFC 205

Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
           +  L+  Y+KCG+V  A  VF+ +    D + W+++I  Y   G  + ALAL+ +M + G
Sbjct: 206 EAALVDMYAKCGDVPNARRVFDGIA-CPDTICWSSMIACYHRVGCYQEALALFSRMDKMG 264

Query: 451 EVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAG 505
             PD  T ++I++    +G  +    +  +M       PS   +  V+   A++G
Sbjct: 265 SAPDQVTLVTIISTLASSGRLDHATALLKKM-----PTPSTVAWNAVISGHAQSG 314


>gi|115459414|ref|NP_001053307.1| Os04g0514500 [Oryza sativa Japonica Group]
 gi|32482936|emb|CAE02340.1| OSJNBb0072M01.1 [Oryza sativa Japonica Group]
 gi|38345689|emb|CAD41109.2| OSJNBb0070J16.5 [Oryza sativa Japonica Group]
 gi|113564878|dbj|BAF15221.1| Os04g0514500 [Oryza sativa Japonica Group]
 gi|215768472|dbj|BAH00701.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218195211|gb|EEC77638.1| hypothetical protein OsI_16630 [Oryza sativa Indica Group]
          Length = 1027

 Score =  263 bits (672), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 173/620 (27%), Positives = 301/620 (48%), Gaps = 61/620 (9%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           S L++ Y K G   +A+N+FD   EKN+V W+ ++ G+  N   E++++ F +MM   L 
Sbjct: 364 SSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQ 423

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKN---------------- 112
            + FT V +L A   L +  L + +H + +K  ++  LF                     
Sbjct: 424 TDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKAL 483

Query: 113 ----PYL--VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
               PY   +S NA+  G   N   ++AV +    R  G+ P+ V+  T I  C  + + 
Sbjct: 484 FSLIPYKDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRAT 543

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
              + IH L IK G+  + +V +S++D+YS   D++++ +IF +++   ++    ++  F
Sbjct: 544 ETGKQIHCLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGF 603

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG-LQSE 285
           V      +A+++F+++ K  +   +V   +++S  +   +   GKQ+H   +  G L  +
Sbjct: 604 VQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCSGSLNSAIGKQVHCYTLKSGVLYDD 663

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITE-KSLVSWTAIISGYVQNGCAREALNQFIKMR 344
             L  S+  +Y K   L+ +  +  ++ + K+L  WTAIISGY QNG    +L  F +MR
Sbjct: 664 TLLGVSLAGIYLKSKMLEDANKLLTEMPDHKNLFEWTAIISGYAQNGYGDHSLVSFWRMR 723

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
                S D  T  S+L A  ++ A     ++HG+  ++GF  Y +  + LI  YSKCG+V
Sbjct: 724 HCNVRS-DEATFASVLKACSDVTAFADGKEIHGLITKSGFGSYETATSALIDMYSKCGDV 782

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
             ++  F+E+   +D++ WN++I G+  NG+ + AL L+ KM E    PD  T+L +L A
Sbjct: 783 ISSFEAFKELKNKQDIMPWNSMIVGFAKNGYADEALLLFQKMEELQIKPDEVTFLGVLIA 842

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C H+GL ++G   F  M +   + P  +HY C +DLL R G L +A     +L       
Sbjct: 843 CTHSGLISEGRHFFGSMRKVYGLTPRLDHYACFIDLLGRGGHLQEAQEAIDQLPFRPDGV 902

Query: 525 IWRALLSGCVLH---------------------------------VGRFQDAEALRSGSQ 551
           +W   L+ C +H                                  G + +A+  R   +
Sbjct: 903 VWATYLAACRMHKDEERGKIAARKLVELEPQYSSTYVLLSSLHAATGNWAEAKVTRESMR 962

Query: 552 KKGIIKIPGISFL---NSTS 568
           +KG+ K PG S++   N TS
Sbjct: 963 EKGVAKFPGCSWITVGNKTS 982



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 114/490 (23%), Positives = 214/490 (43%), Gaps = 60/490 (12%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS-GLLP 69
           L+  Y KSG++  A +      E+   + S ++  ++ +G     + AF ++  + G  P
Sbjct: 97  LVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHARSGSPGDVLGAFRYIRCTAGGRP 156

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF---------------------- 107
           + F +  VL A + +  L   R +H  +VK G  S +F                      
Sbjct: 157 DQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARRVF 216

Query: 108 EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRA 167
           +G+  P  +  ++++A +     +Q+A+ LF+     G  P+ VT++T+I    + G   
Sbjct: 217 DGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVTIISTLASSGR-- 274

Query: 168 LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
                                            LD A  + ++M     ++W  ++    
Sbjct: 275 ---------------------------------LDHATALLKKMPTPSTVAWNAVISGHA 301

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
                 + L ++++MR   +        +++S  A +     G+Q+HA  V+ GL + + 
Sbjct: 302 QSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVF 361

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
           + +S+I +Y+KCG    +++VF+   EK++V W A+++G+VQN    EA+  F  M +  
Sbjct: 362 VGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMR-Y 420

Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
           T   D  T VSIL A   L++  +  Q+H +  +        V N  +  YSK G +  A
Sbjct: 421 TLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDA 480

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
             +F  + + +D +SWN +  G   N   E A+ +  +M   G  PD  ++ + +NAC +
Sbjct: 481 KALFSLIPY-KDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSN 539

Query: 468 AGLTNDGLVI 477
              T  G  I
Sbjct: 540 IRATETGKQI 549



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 111/235 (47%), Gaps = 6/235 (2%)

Query: 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
           + LH +++ GG     RL +S++ +Y K G +  + S      E++  + ++++S + ++
Sbjct: 76  RALHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHARS 135

Query: 331 GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV 390
           G   + L  F  +R       D   L  +L+A   +  L    Q+H    ++GF      
Sbjct: 136 GSPGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFC 195

Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
           +  L+  Y+KCG+V  A  VF+ +    D + W+++I  Y   G  + ALAL+ +M + G
Sbjct: 196 EAALVDMYAKCGDVPNARRVFDGIA-CPDTICWSSMIACYHRVGCYQEALALFSRMDKMG 254

Query: 451 EVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAG 505
             PD  T ++I++    +G  +    +  +M       PS   +  V+   A++G
Sbjct: 255 SAPDQVTLVTIISTLASSGRLDHATALLKKM-----PTPSTVAWNAVISGHAQSG 304


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  263 bits (672), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 159/524 (30%), Positives = 272/524 (51%), Gaps = 51/524 (9%)

Query: 10  KLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLP 69
           KL+S Y   G +KE   +FD + +KNV  W+ ++  Y+  G  ++S+  F  M+  G   
Sbjct: 139 KLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKG--- 195

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNK 129
                                  I G   +   E  LF+ L +  ++S N++++G+++N 
Sbjct: 196 -----------------------IEGKRPESAFE--LFDKLCDRDVISWNSMISGYVSNG 230

Query: 130 LFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNN 189
           L ++ + ++      G+  +  T+++V+ GC   G+ +L + +H L IK      ++ +N
Sbjct: 231 LTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSN 290

Query: 190 SVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIIC 249
           ++LDMYS   DLD A+++F +M  ++V+SWT M+  +     +  A+K+ ++M K  +  
Sbjct: 291 TLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKL 350

Query: 250 DTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVF 309
           D VA+ +++   A  G L  GK +H  +    ++S L + N+++ MY+KCG ++++ SVF
Sbjct: 351 DVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVF 410

Query: 310 NQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAAL 369
           + +  K ++SW  +I                           DS T+  +L A   L+AL
Sbjct: 411 STMVVKDIISWNTMIGEL----------------------KPDSRTMACVLPACASLSAL 448

Query: 370 EICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYG 429
           E   ++HG     G+   R V N L+  Y KCG + LA ++F +M   +D+VSW  +I G
Sbjct: 449 ERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLF-DMIPSKDLVSWTVMIAG 507

Query: 430 YGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKP 489
           YG++G+G  A+A +++M + G  PD  +++SIL AC H+GL   G   F  M  +  ++P
Sbjct: 508 YGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEP 567

Query: 490 SQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGC 533
             EHY C+VDLL+R G LS A      L       IW ALL GC
Sbjct: 568 KLEHYACMVDLLSRTGNLSKAYEFMETLPIAPDATIWGALLCGC 611



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 142/315 (45%), Gaps = 54/315 (17%)

Query: 250 DTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSV- 308
           +T    +++ + A L     GK++H+ +    +  +  L   +++ Y+ CGDL   R V 
Sbjct: 98  ETKTYGSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDGALGLKLVSFYATCGDLKEGRRVF 157

Query: 309 --------------------------------------------------FNQITEKSLV 318
                                                             F+++ ++ ++
Sbjct: 158 DTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVI 217

Query: 319 SWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGI 378
           SW ++ISGYV NG     L  + +M     D VD  T++S+L        L +   +H +
Sbjct: 218 SWNSMISGYVSNGLTERGLGIYKQMMYLGID-VDLATIISVLVGCANSGTLSLGKAVHSL 276

Query: 379 AFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGET 438
           A ++ F R  +  N L+  YSKCG++D A  VFE+MG  R+VVSW ++I GY  +G  + 
Sbjct: 277 AIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMG-ERNVVSWTSMIAGYTRDGRSDG 335

Query: 439 ALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVV 498
           A+ L  +M + G   D     SIL+AC  +G  ++G  + +  I+ N ++ +      ++
Sbjct: 336 AIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDV-HDYIKANNMESNLFVCNALM 394

Query: 499 DLLARAGCLSDASGL 513
           D+ A+ G +  A+ +
Sbjct: 395 DMYAKCGSMEAANSV 409



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 161/329 (48%), Gaps = 10/329 (3%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ LL  Y K G +  A  +F+++ E+NVVSW+ +I GY+ +G  + ++K    M   G+
Sbjct: 289 SNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGV 348

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPYLVSCNAIVAGF 125
             +   +  +L A A   +L+  + +H  +    +ES+LF    L + Y    +   A  
Sbjct: 349 KLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANS 408

Query: 126 INNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDV 185
           + + +  + ++ +N   G  L P++ TM  V+  C +L +    + IHG  ++ G   D 
Sbjct: 409 VFSTMVVKDIISWNTMIGE-LKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDR 467

Query: 186 SVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKS 245
            V N+++D+Y     L  A  +F  +  KD++SWT M+  +    Y  +A+  F EMR +
Sbjct: 468 HVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDA 527

Query: 246 RIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSN--SIIAMYSKCGDLD 303
            I  D V+ ++++   +  G L++G +    ++      E +L +   ++ + S+ G+L 
Sbjct: 528 GIEPDEVSFISILYACSHSGLLEQGWRFF-YIMKNDFNIEPKLEHYACMVDLLSRTGNLS 586

Query: 304 SSRSVFNQITEKSLVSWTAIISGYVQNGC 332
            +     +  E   ++  A I G +  GC
Sbjct: 587 KAY----EFMETLPIAPDATIWGALLCGC 611



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 49/79 (62%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + ++ L+  Y K G +  A  LFD IP K++VSW+++I GY ++G+  +++  F+ M 
Sbjct: 466 DRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMR 525

Query: 64  LSGLLPNSFTMVGVLVAAA 82
            +G+ P+  + + +L A +
Sbjct: 526 DAGIEPDEVSFISILYACS 544


>gi|116310835|emb|CAH67622.1| OSIGBa0140J09.3 [Oryza sativa Indica Group]
          Length = 1027

 Score =  263 bits (671), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 173/620 (27%), Positives = 301/620 (48%), Gaps = 61/620 (9%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           S L++ Y K G   +A+N+FD   EKN+V W+ ++ G+  N   E++++ F +MM   L 
Sbjct: 364 SSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQ 423

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKN---------------- 112
            + FT V +L A   L +  L + +H + +K  ++  LF                     
Sbjct: 424 TDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKAL 483

Query: 113 ----PYL--VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
               PY   +S NA+  G   N   ++AV +    R  G+ P+ V+  T I  C  + + 
Sbjct: 484 FSLIPYKDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRAT 543

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
              + IH L IK G+  + +V +S++D+YS   D++++ +IF +++   ++    ++  F
Sbjct: 544 ETGKQIHCLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGF 603

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG-LQSE 285
           V      +A+++F+++ K  +   +V   +++S  +   +   GKQ+H   +  G L  +
Sbjct: 604 VQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCSGSLNSAIGKQVHCYTLKSGVLYDD 663

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITE-KSLVSWTAIISGYVQNGCAREALNQFIKMR 344
             L  S+  +Y K   L+ +  +  ++ + K+L  WTAIISGY QNG    +L  F +MR
Sbjct: 664 TLLGVSLAGIYLKSKMLEDANKLLTEMPDHKNLFEWTAIISGYAQNGYGDHSLVSFWRMR 723

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
                S D  T  S+L A  ++ A     ++HG+  ++GF  Y +  + LI  YSKCG+V
Sbjct: 724 HCNVRS-DEATFASVLKACSDVTAFADGKEIHGLITKSGFGSYETATSALIDMYSKCGDV 782

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
             ++  F+E+   +D++ WN++I G+  NG+ + AL L+ KM E    PD  T+L +L A
Sbjct: 783 ISSFEAFKELKNKQDIMPWNSMIVGFAKNGYADEALLLFQKMEELQIKPDEVTFLGVLIA 842

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C H+GL ++G   F  M +   + P  +HY C +DLL R G L +A     +L       
Sbjct: 843 CTHSGLISEGRHFFGPMRKVYGLTPRLDHYACFIDLLGRGGHLQEAQEAIDQLPFRPDGV 902

Query: 525 IWRALLSGCVLH---------------------------------VGRFQDAEALRSGSQ 551
           +W   L+ C +H                                  G + +A+  R   +
Sbjct: 903 VWATYLAACRMHKDEERGKIAARKLVELEPQYSSTYVLLSSLHAATGNWAEAKVTRESMR 962

Query: 552 KKGIIKIPGISFL---NSTS 568
           +KG+ K PG S++   N TS
Sbjct: 963 EKGVAKFPGCSWITVGNKTS 982



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 114/490 (23%), Positives = 214/490 (43%), Gaps = 60/490 (12%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS-GLLP 69
           L+  Y KSG++  A +      E+   + S ++  ++ +G     + AF ++  + G  P
Sbjct: 97  LVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHARSGSPGDVLGAFRYIRCTAGGRP 156

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF---------------------- 107
           + F +  VL A + +  L   R +H  +VK G  S +F                      
Sbjct: 157 DQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARRVF 216

Query: 108 EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRA 167
           +G+  P  +  ++++A +     +Q+A+ LF+     G  P+ VT++T+I    + G   
Sbjct: 217 DGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVTIISTLASSGR-- 274

Query: 168 LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
                                            LD A  + ++M     ++W  ++    
Sbjct: 275 ---------------------------------LDHATALLKKMPTPSTVAWNAVISGHA 301

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
                 + L ++++MR   +        +++S  A +     G+Q+HA  V+ GL + + 
Sbjct: 302 QSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVF 361

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
           + +S+I +Y+KCG    +++VF+   EK++V W A+++G+VQN    EA+  F  M +  
Sbjct: 362 VGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMR-Y 420

Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
           T   D  T VSIL A   L++  +  Q+H +  +        V N  +  YSK G +  A
Sbjct: 421 TLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDA 480

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
             +F  + + +D +SWN +  G   N   E A+ +  +M   G  PD  ++ + +NAC +
Sbjct: 481 KALFSLIPY-KDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSN 539

Query: 468 AGLTNDGLVI 477
              T  G  I
Sbjct: 540 IRATETGKQI 549



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 111/235 (47%), Gaps = 6/235 (2%)

Query: 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
           + LH +++ GG     RL +S++ +Y K G +  + S      E++  + ++++S + ++
Sbjct: 76  RALHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHARS 135

Query: 331 GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV 390
           G   + L  F  +R       D   L  +L+A   +  L    Q+H    ++GF      
Sbjct: 136 GSPGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFC 195

Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
           +  L+  Y+KCG+V  A  VF+ +    D + W+++I  Y   G  + ALAL+ +M + G
Sbjct: 196 EAALVDMYAKCGDVPNARRVFDGIA-CPDTICWSSMIACYHRVGCYQEALALFSRMDKMG 254

Query: 451 EVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAG 505
             PD  T ++I++    +G  +    +  +M       PS   +  V+   A++G
Sbjct: 255 SAPDQVTLVTIISTLASSGRLDHATALLKKM-----PTPSTVAWNAVISGHAQSG 304


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  263 bits (671), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 168/593 (28%), Positives = 292/593 (49%), Gaps = 84/593 (14%)

Query: 10  KLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLP 69
           KL+S Y   G +KE   +FD + +KNV  W+ ++  Y+  G  ++S+  F  M+  G+  
Sbjct: 1   KLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGI-- 58

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNK 129
                             E  RS           S+LF+ L +  ++S N++++G+++N 
Sbjct: 59  ------------------EGKRSESA--------SELFDKLCDRDVISWNSMISGYVSNG 92

Query: 130 LFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNN 189
           L ++ + ++      G+  +  T+++V+ GC   G+ +L + +H L IK      ++ +N
Sbjct: 93  LTERGLGIYKQMMYLGIDVDLATIISVLVGCAKSGTLSLGKAVHSLAIKSSFERRINFSN 152

Query: 190 SVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIIC 249
           ++LDMYS   DLD A+++F +M  ++V+SWT M+  +    ++  A+ + ++M K  +  
Sbjct: 153 TLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKL 212

Query: 250 DTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVF 309
           D VA+ +++   A  G L  GK +H  +    + S L + N+++ MY+KCG ++ + SVF
Sbjct: 213 DVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVF 272

Query: 310 NQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAAL 369
           + +  K ++SW  ++                           DS T+  IL A   L+AL
Sbjct: 273 STMVVKDIISWNTMVGEL----------------------KPDSRTMACILPACASLSAL 310

Query: 370 EICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYG 429
           E   ++HG     G+   R V N L+  Y KCG + LA ++F +M   +D+VSW  +I G
Sbjct: 311 ERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLF-DMIPSKDLVSWTVMIAG 369

Query: 430 YGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKP 489
           YG++G+G  A+A +++M + G  PD  +++SIL AC H+GL   G   F  M  +  ++P
Sbjct: 370 YGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEP 429

Query: 490 SQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH------------- 536
             EHY C+VDLL+R G LS A      L       IW ALL GC ++             
Sbjct: 430 KLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERV 489

Query: 537 --------------------VGRFQDAEALRSGSQKKGIIKIPGISFLNSTSR 569
                                 ++++ + +R    KKG+ K PG S++    R
Sbjct: 490 FELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIKGR 542



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 134/265 (50%), Gaps = 3/265 (1%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ LL  Y K G +  A  +F+++ E+NVVSW+ +I GY+ +G+ + ++     M   G+
Sbjct: 151 SNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGV 210

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPYLVSCNAIVAGF 125
             +   +  +L A A   +L+  + +H  +    + S+LF    L + Y    +   A  
Sbjct: 211 KLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANS 270

Query: 126 INNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDV 185
           + + +  + ++ +N   G  L P++ TM  ++  C +L +    + IHG  ++ G   D 
Sbjct: 271 VFSTMVVKDIISWNTMVGE-LKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDR 329

Query: 186 SVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKS 245
            V N+++D+Y     L  A  +F  +  KD++SWT M+  +    Y  +A+  F EMR +
Sbjct: 330 HVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDA 389

Query: 246 RIICDTVALLNLISVNAILGDLKRG 270
            I  D V+ ++++   +  G L++G
Sbjct: 390 GIEPDEVSFISILYACSHSGLLEQG 414



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 49/79 (62%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + ++ L+  Y K G +  A  LFD IP K++VSW+++I GY ++G+  +++  F+ M 
Sbjct: 328 DRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMR 387

Query: 64  LSGLLPNSFTMVGVLVAAA 82
            +G+ P+  + + +L A +
Sbjct: 388 DAGIEPDEVSFISILYACS 406


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  263 bits (671), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 159/524 (30%), Positives = 272/524 (51%), Gaps = 51/524 (9%)

Query: 10  KLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLP 69
           KL+S Y   G +KE   +FD + +KNV  W+ ++  Y+  G  ++S+  F  M+  G   
Sbjct: 139 KLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKG--- 195

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNK 129
                                  I G   +   E  LF+ L +  ++S N++++G+++N 
Sbjct: 196 -----------------------IEGKRPESAFE--LFDKLCDRDVISWNSMISGYVSNG 230

Query: 130 LFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNN 189
           L ++ + ++      G+  +  T+++V+ GC   G+ +L + +H L IK      ++ +N
Sbjct: 231 LTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSN 290

Query: 190 SVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIIC 249
           ++LDMYS   DLD A+++F +M  ++V+SWT M+  +     +  A+K+ ++M K  +  
Sbjct: 291 TLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKL 350

Query: 250 DTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVF 309
           D VA+ +++   A  G L  GK +H  +    ++S L + N+++ MY+KCG ++++ SVF
Sbjct: 351 DVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVF 410

Query: 310 NQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAAL 369
           + +  K ++SW  +I                           DS T+  +L A   L+AL
Sbjct: 411 STMVVKDIISWNTMIGEL----------------------KPDSRTMACVLPACASLSAL 448

Query: 370 EICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYG 429
           E   ++HG     G+   R V N L+  Y KCG + LA ++F +M   +D+VSW  +I G
Sbjct: 449 ERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLF-DMIPSKDLVSWTVMIAG 507

Query: 430 YGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKP 489
           YG++G+G  A+A +++M + G  PD  +++SIL AC H+GL   G   F  M  +  ++P
Sbjct: 508 YGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEP 567

Query: 490 SQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGC 533
             EHY C+VDLL+R G LS A      L       IW ALL GC
Sbjct: 568 KLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGC 611



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 151/331 (45%), Gaps = 56/331 (16%)

Query: 234 DALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSII 293
           +A+++    +KS +  +T    +++ + A L     GK++H+ +    +  +  L   ++
Sbjct: 84  NAMELICMCKKSEL--ETKTYSSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDEALGLKLV 141

Query: 294 AMYSKCGDLDSSRSV--------------------------------------------- 308
           + Y+ CGDL   R V                                             
Sbjct: 142 SFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRP 201

Query: 309 ------FNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTA 362
                 F+++ ++ ++SW ++ISGYV NG     L  + +M     D VD  T++S+L  
Sbjct: 202 ESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGID-VDLATIISVLVG 260

Query: 363 SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVS 422
                 L +   +H +A ++ F R  +  N L+  YSKCG++D A  VFE+MG  R+VVS
Sbjct: 261 CANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMG-ERNVVS 319

Query: 423 WNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMI 482
           W ++I GY  +G  + A+ L  +M + G   D     SIL+AC  +G  ++G  + +  I
Sbjct: 320 WTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDV-HDYI 378

Query: 483 EENKVKPSQEHYGCVVDLLARAGCLSDASGL 513
           + N ++ +      ++D+ A+ G +  A+ +
Sbjct: 379 KANNMESNLFVCNALMDMYAKCGSMEAANSV 409



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 161/329 (48%), Gaps = 10/329 (3%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ LL  Y K G +  A  +F+++ E+NVVSW+ +I GY+ +G  + ++K    M   G+
Sbjct: 289 SNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGV 348

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPYLVSCNAIVAGF 125
             +   +  +L A A   +L+  + +H  +    +ES+LF    L + Y    +   A  
Sbjct: 349 KLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANS 408

Query: 126 INNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDV 185
           + + +  + ++ +N   G  L P++ TM  V+  C +L +    + IHG  ++ G   D 
Sbjct: 409 VFSTMVVKDIISWNTMIGE-LKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDR 467

Query: 186 SVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKS 245
            V N+++D+Y     L  A  +F  +  KD++SWT M+  +    Y  +A+  F EMR +
Sbjct: 468 HVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDA 527

Query: 246 RIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSN--SIIAMYSKCGDLD 303
            I  D V+ ++++   +  G L++G +    ++      E +L +   ++ + S+ G+L 
Sbjct: 528 GIEPDEVSFISILYACSHSGLLEQGWRFF-YIMKNDFNIEPKLEHYACMVDLLSRTGNLS 586

Query: 304 SSRSVFNQITEKSLVSWTAIISGYVQNGC 332
            +     +  E   ++  A I G +  GC
Sbjct: 587 KAY----EFIETLPIAPDATIWGALLCGC 611



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 49/79 (62%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + ++ L+  Y K G +  A  LFD IP K++VSW+++I GY ++G+  +++  F+ M 
Sbjct: 466 DRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMR 525

Query: 64  LSGLLPNSFTMVGVLVAAA 82
            +G+ P+  + + +L A +
Sbjct: 526 DAGIEPDEVSFISILYACS 544


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  263 bits (671), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 182/621 (29%), Positives = 298/621 (47%), Gaps = 63/621 (10%)

Query: 5   PYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML 64
           P+   ++  N    G +  A +LFD+IP   +  ++ +I  YS+ G         S    
Sbjct: 63  PHIICQIDHNRMICGDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRR 122

Query: 65  SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY-------- 114
               PN++T   VL A + L +L  AR++H    + GL +DLF    L + Y        
Sbjct: 123 RLPQPNNYTFPFVLKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRH 182

Query: 115 ------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA 162
                       +V+ NA++AG+  +  +   +      +     PNA T++ ++     
Sbjct: 183 AATVFRRMPARDVVAWNAMLAGYALHGKYSDTIACLLLMQDDH-APNASTLVALLPLLAQ 241

Query: 163 LGSRALCELIHGLTIKLGLILD----VSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            G+ +    +H  +++   + D    V V  ++LDMY+    L  A ++F  M  ++ ++
Sbjct: 242 HGALSQGRAVHAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVT 301

Query: 219 WTRMMGLFVDFEYAGDALKIFREM-RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           W+ ++G FV      +A  +F++M  +        ++ + +   A L DL  GKQLHA +
Sbjct: 302 WSALVGGFVLCGRMLEAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALL 361

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
              GL ++L   NS+++MY+K G +D + ++F+Q+  K  VS++A++SGYVQNG A EA 
Sbjct: 362 AKSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAF 421

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
             F KM Q      D  T+VS++ A   LAAL+     HG     G     S+ N LI  
Sbjct: 422 RVFRKM-QACNVQPDVATMVSLIPACSHLAALQHGKCGHGSVIVRGIASETSICNALIDM 480

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           Y+KCG +DL+  +F+ M   RD+VSWNT+I GYG++G G+ A AL+  M      PD  T
Sbjct: 481 YAKCGRIDLSRQIFDVMP-ARDIVSWNTMIAGYGIHGLGKEATALFLDMKHQACEPDDVT 539

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL 517
           ++ +++AC H+GL  +G   F+ M  +  + P  EHY  +VDLLAR G L +A      +
Sbjct: 540 FICLISACSHSGLVTEGKRWFHMMAHKYGITPRMEHYIGMVDLLARGGFLDEAYQFIQGM 599

Query: 518 LEGMGPNIWRALLSGCVLH---------------------------------VGRFQDAE 544
                  +W ALL  C +H                                  GRF +A 
Sbjct: 600 PLKADVRVWGALLGACRVHKNIDLGKQVSSMIQQLGPEGTGNFVLLSNIFSAAGRFDEAA 659

Query: 545 ALRSGSQKKGIIKIPGISFLN 565
            +R   +++G  K PG S++ 
Sbjct: 660 EVRIIQKEQGFKKSPGCSWIE 680



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 125/456 (27%), Positives = 221/456 (48%), Gaps = 38/456 (8%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + S+ L+  Y K    + A  +F  +P ++VV+W+ ++ GY+++G +  ++     +M
Sbjct: 163 DLFVSTALVDVYAKCASFRHAATVFRRMPARDVVAWNAMLAGYALHGKYSDTIACLL-LM 221

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIH--------------GLMVKFGL------- 102
                PN+ T+V +L   A    L   R++H              G++V   L       
Sbjct: 222 QDDHAPNASTLVALLPLLAQHGALSQGRAVHAYSVRACSLHDHKDGVLVGTALLDMYAKC 281

Query: 103 -----ESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLV---PNAVTML 154
                 S +FE +     V+ +A+V GF+      +A  LF      GL    P +V   
Sbjct: 282 GHLVYASRVFEAMAVRNEVTWSALVGGFVLCGRMLEAFSLFKDMLAQGLCFLSPTSVA-- 339

Query: 155 TVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
           + +R C  L    L + +H L  K GL  D++  NS+L MY+    +D A  +F +M  K
Sbjct: 340 SALRACANLSDLCLGKQLHALLAKSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVK 399

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
           D +S++ ++  +V    A +A ++FR+M+   +  D   +++LI   + L  L+ GK  H
Sbjct: 400 DTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPDVATMVSLIPACSHLAALQHGKCGH 459

Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
             V++ G+ SE  + N++I MY+KCG +D SR +F+ +  + +VSW  +I+GY  +G  +
Sbjct: 460 GSVIVRGIASETSICNALIDMYAKCGRIDLSRQIFDVMPARDIVSWNTMIAGYGIHGLGK 519

Query: 335 EALNQFIKMRQE--KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGF-PRYRSVQ 391
           EA   F+ M+ +  + D V  I L+S  + SG +   E     H +A + G  PR     
Sbjct: 520 EATALFLDMKHQACEPDDVTFICLISACSHSGLVT--EGKRWFHMMAHKYGITPRMEHYI 577

Query: 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
             ++   ++ G +D AY   + M    DV  W  ++
Sbjct: 578 G-MVDLLARGGFLDEAYQFIQGMPLKADVRVWGALL 612


>gi|218186186|gb|EEC68613.1| hypothetical protein OsI_36980 [Oryza sativa Indica Group]
          Length = 981

 Score =  262 bits (670), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 163/556 (29%), Positives = 282/556 (50%), Gaps = 33/556 (5%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ L++ +   G++++AE LFD + E + +S + +I  YS  G   K    FS M   GL
Sbjct: 183 ANSLITMFGNLGRVQDAEKLFDRMEEHDTISRNAMISMYSHQGICSKCFLVFSDMRHHGL 242

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
            P++ T+  ++   A   +      IH L ++  L+S                       
Sbjct: 243 RPDATTLCSLMSVCASADHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEF 302

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           LF  +    L+S N +++ ++ N     A+        +  +PN +T  + +  C + G+
Sbjct: 303 LFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNEIPNHLTFSSALGACSSPGA 362

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
               +++H + ++L L  ++ V NS++ MY     ++ A ++F+ M   DV+S+  ++G 
Sbjct: 363 LIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDVVSYNVLIGG 422

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKR-GKQLHAQVVLGGLQS 284
           +   E    A+++F  +R + I  + + ++N+        DL   G+ LHA ++  G  S
Sbjct: 423 YAVLEDGTKAMQVFSWIRSAGIKPNYITMINIHGSFTSSNDLHNYGRPLHAYIIRTGFLS 482

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           +  ++NS+I MY+KCG+L+SS ++FN IT K++VSW AII+   Q G   EAL  FI M 
Sbjct: 483 DEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANAQLGHGEEALKLFIDM- 541

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
           Q   + +D + L   L++   LA+LE  +QLHG+  ++G      V N  +  Y KCG +
Sbjct: 542 QHAGNKLDRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKM 601

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           +    +  +   +R    WNT+I GY   G+ + A   + +M   G  PD  T++++L+A
Sbjct: 602 NEMLQMVPDQA-IRPQQCWNTLISGYAKYGYFKEAEETFKQMVAMGRKPDYVTFVALLSA 660

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMG-- 522
           C HAGL + G+  +N M     V P  +H  C+VDLL R G  ++A     + +E M   
Sbjct: 661 CSHAGLVDKGIDYYNSMASSFGVSPGIKHCVCIVDLLGRLGRFAEAE----RFIEEMPVL 716

Query: 523 PN--IWRALLSGCVLH 536
           PN  IWR+LLS    H
Sbjct: 717 PNDLIWRSLLSSSRTH 732



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 161/611 (26%), Positives = 283/611 (46%), Gaps = 52/611 (8%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y  + LL  Y   G + +A  LF E+PE+NVVSW+ ++   S NG+ E++++A+  M   
Sbjct: 80  YIGTALLHLYGSRGIVSDARRLFWEMPERNVVSWTALMVALSSNGYLEETLRAYRQMRRE 139

Query: 66  GLL--PNSFTMV------------GVLVAA----AGLQN-LELARSIHGLMVKFGLESD- 105
           G+    N+F  V            G+ VA+    +GLQN + +A S+  +    G   D 
Sbjct: 140 GVPCNANAFATVVSLCGSLENEVPGLQVASHVIVSGLQNQVSVANSLITMFGNLGRVQDA 199

Query: 106 --LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
             LF+ ++    +S NA+++ + +  +  +  L+F+  R  GL P+A T+ +++  C + 
Sbjct: 200 EKLFDRMEEHDTISRNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASA 259

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
              +    IH L ++  L   V+V N++++MYS    L  A  +F  M  +D+ISW  M+
Sbjct: 260 DHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDLISWNTMI 319

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
             +V    + DALK   ++  +  I + +   + +   +  G L  GK +HA V+   LQ
Sbjct: 320 SSYVQNCNSTDALKTLGQLFHTNEIPNHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQ 379

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGY--VQNGCAREALNQFI 341
             L + NS+I MY KC  ++ +  VF  +    +VS+  +I GY  +++G     +  +I
Sbjct: 380 RNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDVVSYNVLIGGYAVLEDGTKAMQVFSWI 439

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +    K + +  I +    T+S +L        LH      GF     V N LI+ Y+KC
Sbjct: 440 RSAGIKPNYITMINIHGSFTSSNDLH--NYGRPLHAYIIRTGFLSDEYVANSLITMYAKC 497

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           GN++ +  +F  +   +++VSWN II      GHGE AL L+  M   G   D       
Sbjct: 498 GNLESSTNIFNSITN-KNIVSWNAIIAANAQLGHGEEALKLFIDMQHAGNKLDRVCLAEC 556

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L++C       +G+ +    ++   +          +D+  + G +++   +     + +
Sbjct: 557 LSSCASLASLEEGMQLHGLGMKSG-LDSDSYVVNAAMDMYGKCGKMNEMLQMVPD--QAI 613

Query: 522 GP-NIWRALLSGCVLHVGRFQDAE-------------------ALRSGSQKKGIIKIPGI 561
            P   W  L+SG   + G F++AE                   AL S     G++   GI
Sbjct: 614 RPQQCWNTLISGYAKY-GYFKEAEETFKQMVAMGRKPDYVTFVALLSACSHAGLVD-KGI 671

Query: 562 SFLNSTSRDFG 572
            + NS +  FG
Sbjct: 672 DYYNSMASSFG 682



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 167/349 (47%), Gaps = 8/349 (2%)

Query: 135 VLLFNFFRG---SGLVPNAVTMLTVIRGCVALGSR---ALCELIHGLTIKLGLILDVSVN 188
           V  F   RG    G+  +   + +++  C   G     A    IH LT + GL+ +V + 
Sbjct: 23  VAAFELLRGMRERGVPLSGFALASLVTACERRGRDEGIACGAAIHALTHRAGLMGNVYIG 82

Query: 189 NSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRII 248
            ++L +Y     +  A ++F EM  ++V+SWT +M       Y  + L+ +R+MR+  + 
Sbjct: 83  TALLHLYGSRGIVSDARRLFWEMPERNVVSWTALMVALSSNGYLEETLRAYRQMRREGVP 142

Query: 249 CDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSV 308
           C+  A   ++S+   L +   G Q+ + V++ GLQ+++ ++NS+I M+   G +  +  +
Sbjct: 143 CNANAFATVVSLCGSLENEVPGLQVASHVIVSGLQNQVSVANSLITMFGNLGRVQDAEKL 202

Query: 309 FNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAA 368
           F+++ E   +S  A+IS Y   G   +    F  MR       D+ TL S+++       
Sbjct: 203 FDRMEEHDTISRNAMISMYSHQGICSKCFLVFSDMRHHGLRP-DATTLCSLMSVCASADH 261

Query: 369 LEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIY 428
                 +H +   +      +V N L++ YS  G +  A  +F  M   RD++SWNT+I 
Sbjct: 262 FSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMS-RRDLISWNTMIS 320

Query: 429 GYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVI 477
            Y  N +   AL    ++  T E+P+  T+ S L AC   G   DG ++
Sbjct: 321 SYVQNCNSTDALKTLGQLFHTNEIPNHLTFSSALGACSSPGALIDGKMV 369



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 108/475 (22%), Positives = 213/475 (44%), Gaps = 29/475 (6%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L++ Y  +GK+ +AE LF  +  ++++SW+ +I  Y  N     ++K    +  +  +PN
Sbjct: 287 LVNMYSAAGKLSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNEIPN 346

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------------FE 108
             T    L A +    L   + +H ++++  L+ +L                      F+
Sbjct: 347 HLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQ 406

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS--R 166
            +    +VS N ++ G+   +   +A+ +F++ R +G+ PN +TM+  I G     +   
Sbjct: 407 SMPTHDVVSYNVLIGGYAVLEDGTKAMQVFSWIRSAGIKPNYITMIN-IHGSFTSSNDLH 465

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
                +H   I+ G + D  V NS++ MY+   +L+++  IF  +  K+++SW  ++   
Sbjct: 466 NYGRPLHAYIIRTGFLSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAAN 525

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
               +  +ALK+F +M+ +    D V L   +S  A L  L+ G QLH   +  GL S+ 
Sbjct: 526 AQLGHGEEALKLFIDMQHAGNKLDRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDS 585

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            + N+ + MY KCG ++    +      +    W  +ISGY + G  +EA   F +M   
Sbjct: 586 YVVNAAMDMYGKCGKMNEMLQMVPDQAIRPQQCWNTLISGYAKYGYFKEAEETFKQMVAM 645

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC--LISSYSKCGNV 404
                D +T V++L+A      ++  +  +  +  + F     +++C  ++    + G  
Sbjct: 646 GRKP-DYVTFVALLSACSHAGLVDKGIDYYN-SMASSFGVSPGIKHCVCIVDLLGRLGRF 703

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
             A    EEM  L + + W +++     + + E       K+ E     DS+  L
Sbjct: 704 AEAERFIEEMPVLPNDLIWRSLLSSSRTHKNLEIGRKAAKKLLELDPFDDSAYVL 758



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 84/183 (45%), Gaps = 22/183 (12%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y ++ L++ Y K G ++ + N+F+ I  KN+VSW+ +I   +  G  E+++K F  M 
Sbjct: 483 DEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANAQLGHGEEALKLFIDMQ 542

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFE-----------GLKN 112
            +G   +   +   L + A L +LE    +HGL +K GL+SD +            G  N
Sbjct: 543 HAGNKLDRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMN 602

Query: 113 PYL----------VSC-NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
             L            C N +++G+     F++A   F      G  P+ VT + ++  C 
Sbjct: 603 EMLQMVPDQAIRPQQCWNTLISGYAKYGYFKEAEETFKQMVAMGRKPDYVTFVALLSACS 662

Query: 162 ALG 164
             G
Sbjct: 663 HAG 665


>gi|449439735|ref|XP_004137641.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
 gi|449514868|ref|XP_004164502.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 601

 Score =  262 bits (669), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 182/591 (30%), Positives = 291/591 (49%), Gaps = 59/591 (9%)

Query: 31  IPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELA 90
           I +K +  W++ I      GF  +S++ +S M  SG+  N+FT   +L A A L ++   
Sbjct: 13  ITKKPLYLWNLTIRSSVNGGFFAQSLETYSFMRHSGIHGNNFTFPLLLKACANLASIGDG 72

Query: 91  RSIHGLMVKFGLESDLF--EGLKNPY--------------------LVSCNAIVAGFINN 128
             +H  ++  G ESD+F    L + Y                    ++S N+++A +  +
Sbjct: 73  TMLHAHLIHVGFESDVFVQTSLVDMYSKFSNLRASRQVFDETSTRSVISWNSMIAAYSRS 132

Query: 129 KLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV--ALGSRALCELIHGLTIKLGLILDVS 186
               +A+ LF    G G  PN+ T ++++ G      GS     L+HG   K  L  D  
Sbjct: 133 FRVNEALKLFREMLGGGFEPNSSTFVSLLSGFADPTHGSLFQGRLLHGCLTKFQLHDDTP 192

Query: 187 VNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSR 246
           V NS++ MY     +D+A  +F  +  K VISWT M+G ++         + F +MR++ 
Sbjct: 193 VENSLVQMYVNFGQIDSACSVFYAISEKTVISWTIMLGGYLKAGAVAKVFETFSQMRQNN 252

Query: 247 IICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSR 306
           ++ D    +++IS    LG+L  G  LH+ ++  GL+ E  +   +I+MYSKCGDL S+R
Sbjct: 253 VVLDKFVFVDIISSCIQLGNLFLGSSLHSLLLKTGLKYEDPIGCLLISMYSKCGDLLSAR 312

Query: 307 SVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGEL 366
           +VF+ ++EKS+ SWT++ISGY   G  REAL+ F  M  +     +   L + ++A  +L
Sbjct: 313 AVFDLLSEKSIYSWTSMISGYANAGYPREALSLF-SMATQNNVRPNGAMLATAISACADL 371

Query: 367 AALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTI 426
            +L +  ++     + G      V   LI  Y K G+++ A  VF  M   RD+ +W+++
Sbjct: 372 GSLSMRREIEAFIQQDGLASDSQVSTSLIHLYCKFGSIEKAEKVFNSM-IHRDLAAWSSM 430

Query: 427 IYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENK 486
           + GY V+G GE  + L+H+M  +G  PD S Y SIL AC H+GL  DGL  F  M  +  
Sbjct: 431 MNGYAVHGMGEKTMNLFHEMQRSGIKPDGSVYASILLACSHSGLVEDGLEHFKNMQLDYG 490

Query: 487 VKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGC------------- 533
           + P+  HY C+VD+L+RAG L  A     ++        W   LS C             
Sbjct: 491 IVPTMVHYTCLVDILSRAGHLELALNTIQEMPTQFQSQAWAPFLSACRTYCDVELGEVAN 550

Query: 534 -----------VLHV---------GRFQDAEALRSGSQKKGIIKIPGISFL 564
                      V HV         G++++A  +RS    KG++K PG S L
Sbjct: 551 RCLLSSNPRNPVNHVLMANLYTSMGKWKEAAKVRSLIDDKGLVKEPGCSQL 601



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 109/445 (24%), Positives = 203/445 (45%), Gaps = 26/445 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L+  Y K   ++ +  +FDE   ++V+SW+ +I  YS +    +++K F  M+
Sbjct: 87  DVFVQTSLVDMYSKFSNLRASRQVFDETSTRSVISWNSMIAAYSRSFRVNEALKLFREML 146

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLEL--ARSIHGLMVKFGLESD---------------- 105
             G  PNS T V +L   A   +  L   R +HG + KF L  D                
Sbjct: 147 GGGFEPNSSTFVSLLSGFADPTHGSLFQGRLLHGCLTKFQLHDDTPVENSLVQMYVNFGQ 206

Query: 106 ------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                 +F  +    ++S   ++ G++      +    F+  R + +V +    + +I  
Sbjct: 207 IDSACSVFYAISEKTVISWTIMLGGYLKAGAVAKVFETFSQMRQNNVVLDKFVFVDIISS 266

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C+ LG+  L   +H L +K GL  +  +   ++ MYS   DL +A  +F  +  K + SW
Sbjct: 267 CIQLGNLFLGSSLHSLLLKTGLKYEDPIGCLLISMYSKCGDLLSARAVFDLLSEKSIYSW 326

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           T M+  + +  Y  +AL +F    ++ +  +   L   IS  A LG L   +++ A +  
Sbjct: 327 TSMISGYANAGYPREALSLFSMATQNNVRPNGAMLATAISACADLGSLSMRREIEAFIQQ 386

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            GL S+ ++S S+I +Y K G ++ +  VFN +  + L +W+++++GY  +G   + +N 
Sbjct: 387 DGLASDSQVSTSLIHLYCKFGSIEKAEKVFNSMIHRDLAAWSSMMNGYAVHGMGEKTMNL 446

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQ-LHGIAFEAGFPRYRSVQNCLISSY 398
           F +M++      D     SIL A      +E  L+    +  + G         CL+   
Sbjct: 447 FHEMQRSGIKP-DGSVYASILLACSHSGLVEDGLEHFKNMQLDYGIVPTMVHYTCLVDIL 505

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSW 423
           S+ G+++LA    +EM       +W
Sbjct: 506 SRAGHLELALNTIQEMPTQFQSQAW 530


>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 874

 Score =  262 bits (669), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 172/557 (30%), Positives = 279/557 (50%), Gaps = 40/557 (7%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + L+  Y K G +++   +F+ +P++NVV+W+ ++ GY         M  F  M   G+ 
Sbjct: 139 TALVDMYMKCGGVEDGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVW 198

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY------------ 114
           PN FT   VL A A    ++L R +H   VKFG  S +F    L N Y            
Sbjct: 199 PNPFTFTSVLSAVASQGAVDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAV 258

Query: 115 --------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
                   +VS N ++AG + N+   +A+ LF+  R S    +  T  TVI+ C  L   
Sbjct: 259 FRQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQL 318

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME-CKDVISWTRMMGL 225
           AL   +H   +K G   D +V  +++D YS   +LD A  IF  M   ++V+SWT M+G 
Sbjct: 319 ALARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGG 378

Query: 226 FVDFEYAGDALKIFREMRKSRIICD--TVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
            +       A  +F  MR+  +  +  T + +   S+  +L       Q+HAQ++    Q
Sbjct: 379 CIQNADIPLAAALFSRMREDNVKPNEFTYSTVLTASIPILL------PQIHAQIIKTNYQ 432

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
               +  +++A YSK G+ + + S+F  I  K +V+W+A++S Y Q G    A N FIKM
Sbjct: 433 HAPSVGTALLASYSKLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQAGDCDGATNVFIKM 492

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
             +     +     +I   +   A ++   Q H I+ +  +     V + L++ Y++ G+
Sbjct: 493 SMQGMKPNEFTISSAIDACASPTAGIDQGRQFHAISIKYRYQDAICVGSALVTMYARKGS 552

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           +D A IVFE     RD+VSWN++I GY  +G+ + AL  + +M   G   D +T+L+++ 
Sbjct: 553 IDSARIVFERQTD-RDLVSWNSMISGYAQHGYSKEALDTFRQMETVGIEMDGATFLAVIV 611

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM-- 521
            C HAGL  +G   F+ M+ ++ + P+ EHY C+VDL +RAG L +       L+EGM  
Sbjct: 612 GCTHAGLVKEGQQYFDSMVMDHNISPTMEHYSCMVDLYSRAGKLDETM----NLIEGMPF 667

Query: 522 --GPNIWRALLSGCVLH 536
             G  +WR LL  C +H
Sbjct: 668 PAGAMVWRTLLGACRVH 684



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 124/461 (26%), Positives = 230/461 (49%), Gaps = 12/461 (2%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +FEG+    +V+  +++ G++  +     + LF   R  G+ PN  T  +V+    + G+
Sbjct: 157 VFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGA 216

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
             L   +H  ++K G    V V NS+++MYS    ++ A  +FR+ME +D++SW  +M  
Sbjct: 217 VDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAG 276

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
            +  E+  +AL++F + R S           +I + A L  L   +QLH+ V+  G  S+
Sbjct: 277 LLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALARQLHSCVLKHGFHSD 336

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
             +  +I+  YSKCG+LD + ++F  +   +++VSWTA+I G +QN     A   F +MR
Sbjct: 337 GNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNADIPLAAALFSRMR 396

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
           ++     +  T  ++LTAS  +    +  Q+H    +  +    SV   L++SYSK GN 
Sbjct: 397 EDNVKP-NEFTYSTVLTASIPI----LLPQIHAQIIKTNYQHAPSVGTALLASYSKLGNT 451

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           + A  +F+ +   +DVV+W+ ++  Y   G  + A  ++ KM+  G  P+  T  S ++A
Sbjct: 452 EEALSIFKMIDH-KDVVAWSAMLSCYSQAGDCDGATNVFIKMSMQGMKPNEFTISSAIDA 510

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C       D    F+ +  + + + +      +V + AR G + D++ +  +        
Sbjct: 511 CASPTAGIDQGRQFHAISIKYRYQDAICVGSALVTMYARKGSI-DSARIVFERQTDRDLV 569

Query: 525 IWRALLSGCVLHVGRFQDAEALRSGSQKKGI-IKIPGISFL 564
            W +++SG   H       EAL +  Q + + I++ G +FL
Sbjct: 570 SWNSMISGYAQH---GYSKEALDTFRQMETVGIEMDGATFL 607



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 102/220 (46%), Gaps = 29/220 (13%)

Query: 5   PYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML 64
           P   + LL++Y K G  +EA ++F  I  K+VV+WS ++  YS  G  + +   F  M +
Sbjct: 435 PSVGTALLASYSKLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQAGDCDGATNVFIKMSM 494

Query: 65  SGLLPNSFTMVGVLVA-AAGLQNLELARSIHGLMVKFGLESDL----------------- 106
            G+ PN FT+   + A A+    ++  R  H + +K+  +  +                 
Sbjct: 495 QGMKPNEFTISSAIDACASPTAGIDQGRQFHAISIKYRYQDAICVGSALVTMYARKGSID 554

Query: 107 -----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                FE   +  LVS N++++G+  +   ++A+  F      G+  +  T L VI GC 
Sbjct: 555 SARIVFERQTDRDLVSWNSMISGYAQHGYSKEALDTFRQMETVGIEMDGATFLAVIVGCT 614

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDL 201
             G      +  G      +++D +++ + ++ YSC++DL
Sbjct: 615 HAGL-----VKEGQQYFDSMVMDHNISPT-MEHYSCMVDL 648


>gi|302798571|ref|XP_002981045.1| hypothetical protein SELMODRAFT_334 [Selaginella moellendorffii]
 gi|300151099|gb|EFJ17746.1| hypothetical protein SELMODRAFT_334 [Selaginella moellendorffii]
          Length = 833

 Score =  262 bits (669), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 167/563 (29%), Positives = 286/563 (50%), Gaps = 39/563 (6%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + L++ Y + G ++ A  +F  +PE+NVVSW+ ++   ++N    ++++ F  M+   ++
Sbjct: 240 TALVTMYGRCGCLESAREIFHRMPERNVVSWNAMVASCTLNAHFAEAIELFKRMVAVAMV 299

Query: 69  -PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL--------------------- 106
            P   + + VL A    + L   R IH ++ +  L S +                     
Sbjct: 300 EPTRVSFITVLNAVTTPEALAEGRRIHAMIQERQLLSQIEVANALVTMYGRCGGVGDAER 359

Query: 107 -FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
            F  ++   LVS NA+++ +  + L ++ V LF+  R   + P+ +T L  +  C  +  
Sbjct: 360 VFSAMERRDLVSWNAMISAYAQSGLAREVVNLFHRMRAERVPPDRITFLMALDACAEIRD 419

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSC----------LMDLDAAIQIFREMECKD 215
                 +H L+++ G    +SV N+ + +YS           LM++ A I  F  M  +D
Sbjct: 420 LDSGRTVHHLSVESGFGSCISVANATMHLYSSCSSSSSSSSSLMEVVAGI--FESMAARD 477

Query: 216 VISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
           VISW  M+  +V    +  AL IF+ M    I  + V  ++L+SV      L++G+ +H 
Sbjct: 478 VISWNTMITGYVQAGDSFSALSIFKRMLLEGIRGNQVTFMSLLSVCDSRAFLRQGETIHR 537

Query: 276 QVV--LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA 333
           +V+     L S+  ++ +I+ MY KCG+LD++R +F   + ++L SW ++IS Y  +G A
Sbjct: 538 RVINQTPELSSDPIVAAAIVNMYGKCGELDTARHLFEDTSHRNLASWNSMISAYALHGRA 597

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC 393
            +A +   +MR+E     D +T +++L A     A+     +H    ++G  +   V N 
Sbjct: 598 EQAFDLSERMRREGVLP-DRVTFITLLNACVAGGAVRHGKMIHARIIDSGLEKDTVVANA 656

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           L++ YSKCGN+D A  +F  + + RDVVSWN II G+  NGH   AL     M + G  P
Sbjct: 657 LVNFYSKCGNLDTATSLFGALDY-RDVVSWNGIIAGFAHNGHAREALKSMWLMQQDGVRP 715

Query: 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL 513
           D+ T+L+IL+A  HAG    G   F  M  +++++   EHYGC++DLL RAG + DA   
Sbjct: 716 DAITFLTILSASSHAGFLRQGGDDFVSMAVDHELERGVEHYGCMIDLLGRAGRIGDAEYF 775

Query: 514 AGKLLEGMGPNIWRALLSGCVLH 536
              + +      W  LLS C +H
Sbjct: 776 VSAMRDEDKEVSWMTLLSACEVH 798



 Score =  222 bits (565), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 161/597 (26%), Positives = 295/597 (49%), Gaps = 47/597 (7%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           ++L++ Y +   + EA  +FD + E++VVSW+ +I  Y+  G   +++  F+ M  S L 
Sbjct: 37  NRLVNMYRRCSSLDEARKVFDRMRERDVVSWTAMISAYAQTGHQRQALDLFTEMAGSSLD 96

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG-LESD---------------------- 105
           PN  T + +L A    + LE  + IH  +     LESD                      
Sbjct: 97  PNRVTFLALLEACDSPEFLEDGKQIHARVSALQLLESDVPVANAVMGMYRKCERADLAMA 156

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F  ++   L+S N  +A    +  +   + L    +  G+ P+ VT ++ +  C+  GS
Sbjct: 157 VFSEMRERDLISWNNAIAANAESGDYTFTLALLKSMQLEGMAPDKVTFVSALNACI--GS 214

Query: 166 RALC--ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
           R+L    LIH L ++ G+  DV +  +++ MY     L++A +IF  M  ++V+SW  M+
Sbjct: 215 RSLSNGRLIHALVLERGMEGDVVLGTALVTMYGRCGCLESAREIFHRMPERNVVSWNAMV 274

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDT-VALLNLISVNAILGDLKRGKQLHAQVVLGGL 282
                  +  +A+++F+ M    ++  T V+ + +++       L  G+++HA +    L
Sbjct: 275 ASCTLNAHFAEAIELFKRMVAVAMVEPTRVSFITVLNAVTTPEALAEGRRIHAMIQERQL 334

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
            S++ ++N+++ MY +CG +  +  VF+ +  + LVSW A+IS Y Q+G ARE +N F +
Sbjct: 335 LSQIEVANALVTMYGRCGGVGDAERVFSAMERRDLVSWNAMISAYAQSGLAREVVNLFHR 394

Query: 343 MRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
           MR E+    D IT +  L A  E+  L+    +H ++ E+GF    SV N  +  YS C 
Sbjct: 395 MRAERVPP-DRITFLMALDACAEIRDLDSGRTVHHLSVESGFGSCISVANATMHLYSSCS 453

Query: 403 N--------VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           +        +++   +FE M   RDV+SWNT+I GY   G   +AL+++ +M   G   +
Sbjct: 454 SSSSSSSSLMEVVAGIFESMA-ARDVISWNTMITGYVQAGDSFSALSIFKRMLLEGIRGN 512

Query: 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY-GCVVDLLARAGCLSDASGL 513
             T++S+L+ C        G  I  ++I +     S       +V++  + G L  A  L
Sbjct: 513 QVTFMSLLSVCDSRAFLRQGETIHRRVINQTPELSSDPIVAAAIVNMYGKCGELDTARHL 572

Query: 514 AGKLLEGMGPNI--WRALLSGCVLHVGRFQDAEALRSGSQKKGII--KIPGISFLNS 566
                +    N+  W +++S   LH GR + A  L    +++G++  ++  I+ LN+
Sbjct: 573 ---FEDTSHRNLASWNSMISAYALH-GRAEQAFDLSERMRREGVLPDRVTFITLLNA 625



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 154/594 (25%), Positives = 276/594 (46%), Gaps = 45/594 (7%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ ++  Y K  +   A  +F E+ E++++SW+  I   + +G +  ++     M L G+
Sbjct: 138 ANAVMGMYRKCERADLAMAVFSEMRERDLISWNNAIAANAESGDYTFTLALLKSMQLEGM 197

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
            P+  T V  L A  G ++L   R IH L+++ G+E D                      
Sbjct: 198 APDKVTFVSALNACIGSRSLSNGRLIHALVLERGMEGDVVLGTALVTMYGRCGCLESARE 257

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLV-PNAVTMLTVIRGCVALG 164
           +F  +    +VS NA+VA    N  F +A+ LF       +V P  V+ +TV+       
Sbjct: 258 IFHRMPERNVVSWNAMVASCTLNAHFAEAIELFKRMVAVAMVEPTRVSFITVLNAVTTPE 317

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
           + A    IH +  +  L+  + V N+++ MY     +  A ++F  ME +D++SW  M+ 
Sbjct: 318 ALAEGRRIHAMIQERQLLSQIEVANALVTMYGRCGGVGDAERVFSAMERRDLVSWNAMIS 377

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            +     A + + +F  MR  R+  D +  L  +   A + DL  G+ +H   V  G  S
Sbjct: 378 AYAQSGLAREVVNLFHRMRAERVPPDRITFLMALDACAEIRDLDSGRTVHHLSVESGFGS 437

Query: 285 ELRLSNSIIAMYSKCGD--------LDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
            + ++N+ + +YS C          ++    +F  +  + ++SW  +I+GYVQ G +  A
Sbjct: 438 CISVANATMHLYSSCSSSSSSSSSLMEVVAGIFESMAARDVISWNTMITGYVQAGDSFSA 497

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS---VQNC 393
           L+ F +M  E     + +T +S+L+     A L     +H        P   S   V   
Sbjct: 498 LSIFKRMLLEGIRG-NQVTFMSLLSVCDSRAFLRQGETIHRRVINQT-PELSSDPIVAAA 555

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           +++ Y KCG +D A  +FE+    R++ SWN++I  Y ++G  E A  L  +M   G +P
Sbjct: 556 IVNMYGKCGELDTARHLFEDTSH-RNLASWNSMISAYALHGRAEQAFDLSERMRREGVLP 614

Query: 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL 513
           D  T++++LNAC   G    G +I  ++I+    K +      +V+  ++ G L  A+ L
Sbjct: 615 DRVTFITLLNACVAGGAVRHGKMIHARIIDSGLEKDTVV-ANALVNFYSKCGNLDTATSL 673

Query: 514 AGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSG--SQKKGIIKIPGISFLN 565
            G  L+      W  +++G   H G  +  EAL+S    Q+ G ++   I+FL 
Sbjct: 674 FGA-LDYRDVVSWNGIIAG-FAHNGHAR--EALKSMWLMQQDG-VRPDAITFLT 722



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 123/495 (24%), Positives = 228/495 (46%), Gaps = 38/495 (7%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ L++ Y + G + +AE +F  +  +++VSW+ +I  Y+ +G   + +  F  M    +
Sbjct: 341 ANALVTMYGRCGGVGDAERVFSAMERRDLVSWNAMISAYAQSGLAREVVNLFHRMRAERV 400

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES----------------------- 104
            P+  T +  L A A +++L+  R++H L V+ G  S                       
Sbjct: 401 PPDRITFLMALDACAEIRDLDSGRTVHHLSVESGFGSCISVANATMHLYSSCSSSSSSSS 460

Query: 105 -------DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
                   +FE +    ++S N ++ G++       A+ +F      G+  N VT ++++
Sbjct: 461 SLMEVVAGIFESMAARDVISWNTMITGYVQAGDSFSALSIFKRMLLEGIRGNQVTFMSLL 520

Query: 158 RGCVALGSRALCELIHGLTIKLG--LILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKD 215
             C +       E IH   I     L  D  V  ++++MY    +LD A  +F +   ++
Sbjct: 521 SVCDSRAFLRQGETIHRRVINQTPELSSDPIVAAAIVNMYGKCGELDTARHLFEDTSHRN 580

Query: 216 VISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
           + SW  M+  +     A  A  +   MR+  ++ D V  + L++     G ++ GK +HA
Sbjct: 581 LASWNSMISAYALHGRAEQAFDLSERMRREGVLPDRVTFITLLNACVAGGAVRHGKMIHA 640

Query: 276 QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
           +++  GL+ +  ++N+++  YSKCG+LD++ S+F  +  + +VSW  II+G+  NG ARE
Sbjct: 641 RIIDSGLEKDTVVANALVNFYSKCGNLDTATSLFGALDYRDVVSWNGIIAGFAHNGHARE 700

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAAL-EICLQLHGIAFEAGFPRYRSVQNCL 394
           AL     M+Q+     D+IT ++IL+AS     L +       +A +    R      C+
Sbjct: 701 ALKSMWLMQQDGVRP-DAITFLTILSASSHAGFLRQGGDDFVSMAVDHELERGVEHYGCM 759

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           I    + G +  A      M      VSW T++    V+G  E A  +   + E      
Sbjct: 760 IDLLGRAGRIGDAEYFVSAMRDEDKEVSWMTLLSACEVHGDEERAKRVAGSIVEMNP-QH 818

Query: 455 SSTYLSILN---ACG 466
           SS Y+++ N    CG
Sbjct: 819 SSAYVALSNLYATCG 833



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 137/322 (42%), Gaps = 62/322 (19%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           DP  ++ +++ Y K G++  A +LF++   +N+ SW+ +I  Y+++G  E++      M 
Sbjct: 549 DPIVAAAIVNMYGKCGELDTARHLFEDTSHRNLASWNSMISAYALHGRAEQAFDLSERMR 608

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
             G+LP+  T + +L A      +   + IH  ++  GLE D                  
Sbjct: 609 REGVLPDRVTFITLLNACVAGGAVRHGKMIHARIIDSGLEKDTVVANALVNFYSKCGNLD 668

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               LF  L    +VS N I+AGF +N   ++A+      +  G+ P+A+T LT++    
Sbjct: 669 TATSLFGALDYRDVVSWNGIIAGFAHNGHAREALKSMWLMQQDGVRPDAITFLTILSASS 728

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
             G      L  G    + + +D  +   V + Y C++DL                    
Sbjct: 729 HAGF-----LRQGGDDFVSMAVDHELERGV-EHYGCMIDLLG------------------ 764

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
             G   D EY   A+   R+  K       V+ + L+S   + GD +R K++   +V   
Sbjct: 765 RAGRIGDAEYFVSAM---RDEDKE------VSWMTLLSACEVHGDEERAKRVAGSIVEMN 815

Query: 282 LQ---SELRLSNSIIAMYSKCG 300
            Q   + + LSN    +Y+ CG
Sbjct: 816 PQHSSAYVALSN----LYATCG 833


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  262 bits (669), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 177/556 (31%), Positives = 285/556 (51%), Gaps = 27/556 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + ++ L+  Y K  +  +++ LFDEIPE+NVVSW+ +   Y    F  +++  F  M+
Sbjct: 191 DVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMV 250

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVA 123
           LSG+ PN F++  ++ A  GL++    + IHG ++K G + D F         S NA+V 
Sbjct: 251 LSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPF---------SANALVD 301

Query: 124 GFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV--ALGSRALCEL------IHGL 175
            +        A+ +F   +     P+ V+   VI GCV      +AL  L      +H  
Sbjct: 302 MYAKVGDLADAISVFEKIKQ----PDIVSWNAVIAGCVLHEHHEQALELLGQMKRQLHSS 357

Query: 176 TIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDA 235
            +K+ +  D+ V+  ++DMYS    L+ A   F  +  KD+I+W  ++  +  +    +A
Sbjct: 358 LMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEA 417

Query: 236 LKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAM 295
           L +F EM K  I  +   L  ++   A L  +   +Q+H   V  G  S++ + NS+I  
Sbjct: 418 LSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDS 477

Query: 296 YSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSIT 355
           Y KC  ++ +  +F + T   LVS+T++I+ Y Q G   EAL  F++M Q+     D   
Sbjct: 478 YGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEM-QDMELKPDRFV 536

Query: 356 LVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMG 415
             S+L A   L+A E   QLH    + GF       N L++ Y+KCG++D A   F E+ 
Sbjct: 537 CSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELT 596

Query: 416 FLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGL 475
             R +VSW+ +I G   +GHG  AL L+++M + G  P+  T +S+L AC HAGL  +  
Sbjct: 597 -ERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAK 655

Query: 476 VIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVL 535
           + F  M E    KP QEHY C++DLL RAG +++A  L  K+      ++W ALL    +
Sbjct: 656 LYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARI 715

Query: 536 HVGRFQDAEALRSGSQ 551
           H    +D E  R  ++
Sbjct: 716 H----KDVELGRRAAE 727



 Score =  244 bits (624), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 178/583 (30%), Positives = 287/583 (49%), Gaps = 72/583 (12%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           DP   + L++ Y K      A  L DE  E ++VSWS +I GY+ NG    ++ AF  M 
Sbjct: 90  DPSIRNHLINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMH 149

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
           L G+  N FT   VL A + +++L + + +HG++V  G E D                  
Sbjct: 150 LLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFL 209

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               LF+ +    +VS NA+ + ++      +AV LF     SG+ PN  ++ +++  C 
Sbjct: 210 DSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACT 269

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            L   +  ++IHG  IKLG   D    N+++DMY+ + DL  AI +F +++  D++SW  
Sbjct: 270 GLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNA 329

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++   V  E+   AL+                         +LG +KR  QLH+ ++   
Sbjct: 330 VIAGCVLHEHHEQALE-------------------------LLGQMKR--QLHSSLMKMD 362

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           ++S+L +S  ++ MYSKC  L+ +R  FN + EK L++W AIISGY Q     EAL+ F+
Sbjct: 363 MESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFV 422

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +M +E     +  TL +IL ++  L  + +C Q+HG++ ++GF     V N LI SY KC
Sbjct: 423 EMHKEGI-GFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKC 481

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
            +V+ A  +FEE   + D+VS+ ++I  Y   G GE AL L+ +M +    PD     S+
Sbjct: 482 SHVEDAERIFEECT-IGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSL 540

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLL---------ARAGCLSDASG 512
           LNAC +      G  +   +++          YG V+D+          A+ G + DA G
Sbjct: 541 LNACANLSAFEQGKQLHVHILK----------YGFVLDIFAGNSLVNMYAKCGSIDDA-G 589

Query: 513 LAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGI 555
            A   L   G   W A++ G   H G  + A  L +   K+G+
Sbjct: 590 RAFSELTERGIVSWSAMIGGLAQH-GHGRQALQLFNQMLKEGV 631



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 154/314 (49%), Gaps = 2/314 (0%)

Query: 133 QAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVL 192
           Q   + N        P +V+   ++  C    S      IH    K GL  D S+ N ++
Sbjct: 39  QTTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLI 98

Query: 193 DMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTV 252
           ++YS       A ++  E    D++SW+ ++  +      G AL  F EM    + C+  
Sbjct: 99  NLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEF 158

Query: 253 ALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQI 312
              +++   +I+ DL+ GKQ+H  VV+ G + ++ ++N+++ MY+KC +   S+ +F++I
Sbjct: 159 TFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEI 218

Query: 313 TEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEIC 372
            E+++VSW A+ S YVQ     EA+  F +M        +  +L S++ A   L      
Sbjct: 219 PERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKP-NEFSLSSMVNACTGLRDSSRG 277

Query: 373 LQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGV 432
             +HG   + G+       N L+  Y+K G++  A  VFE++    D+VSWN +I G  +
Sbjct: 278 KIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIK-QPDIVSWNAVIAGCVL 336

Query: 433 NGHGETALALYHKM 446
           + H E AL L  +M
Sbjct: 337 HEHHEQALELLGQM 350



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 2/84 (2%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  + L++ Y K G I +A   F E+ E+ +VSWS +I G + +G   ++++ F+ M
Sbjct: 567 LDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQM 626

Query: 63  MLSGLLPNSFTMVGVLVAA--AGL 84
           +  G+ PN  T+V VL A   AGL
Sbjct: 627 LKEGVSPNHITLVSVLGACNHAGL 650


>gi|225460338|ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Vitis vinifera]
          Length = 802

 Score =  262 bits (669), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 177/570 (31%), Positives = 294/570 (51%), Gaps = 43/570 (7%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           PC+   N+  LL  Y K G+   A+ LFD +P++NVVSW+ +I GY+  GF+ + M  F 
Sbjct: 52  PCLFLLNN--LLYMYCKCGETDVAKKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFK 109

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL-------------- 106
              +S L  + FT    L       +L L R IH L+   GL   +              
Sbjct: 110 EARMSDLRLDKFTFSNALSVCGRTLDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCG 169

Query: 107 --------FEGLKNPYLVSCNAIVAGFI----NNKLFQQAVLLFNFFRGSGLVPNAVTML 154
                   FE       VS N+++AG++    N+++ +   LL    R  GL  N+  + 
Sbjct: 170 RIDWARLVFESADELDSVSWNSLIAGYVRIGSNDEMLR---LLVKMLR-HGLNLNSYALG 225

Query: 155 TVIRGCVA-LGSRALC-ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME 212
           + ++ C +   S   C +++HG  +KLGL LDV V  ++LD Y+ + DL+ A +IF+ M 
Sbjct: 226 SALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMP 285

Query: 213 CKDVISWTRMMGLFVDFE-----YAGDALKIFREMRKSRIICDTVALLNLISVNAILGDL 267
             +V+ +  M+  F+  E     +A +A+ +F EM+   +        +++   + +   
Sbjct: 286 DPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAF 345

Query: 268 KRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGY 327
           + GKQ+HAQ+    LQS+  + N+++ +YS  G ++     F+   +  +VSWT++I G+
Sbjct: 346 ECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGH 405

Query: 328 VQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRY 387
           VQNG     L  F ++        D  T+  +L+A   LAA++   Q+H  A + G   +
Sbjct: 406 VQNGQFEGGLTLFHELLFSGRKP-DEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNF 464

Query: 388 RSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMT 447
             +QN  I  Y+KCG++D A + F+E     D+VSW+ +I     +G  + A+ L+  M 
Sbjct: 465 TIIQNSQICMYAKCGDIDSANMTFKETKN-PDIVSWSVMISSNAQHGCAKEAVDLFELMK 523

Query: 448 ETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCL 507
            +G  P+  T+L +L AC H GL  +GL  F  M +++ + P+ +H  C+VDLL RAG L
Sbjct: 524 GSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRL 583

Query: 508 SDA-SGLAGKLLEGMGPNIWRALLSGCVLH 536
           ++A S +     EG  P +WR+LLS C +H
Sbjct: 584 AEAESFIMDSGFEG-DPVMWRSLLSACRVH 612



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 130/511 (25%), Positives = 239/511 (46%), Gaps = 46/511 (9%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ L+  Y K G+I  A  +F+   E + VSW+ +I GY   G +++ ++    M+  GL
Sbjct: 158 TNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGL 217

Query: 68  LPNSFTMVGVLVAAAG--LQNLELARSIHGLMVKFGLESD-------------------- 105
             NS+ +   L A       ++E  + +HG  VK GL+ D                    
Sbjct: 218 NLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDA 277

Query: 106 --LFEGLKNPYLVSCNAIVAGFIN-----NKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
             +F+ + +P +V  NA++AGF+      ++   +A+ LF   +  G+ P+  T  ++++
Sbjct: 278 TKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILK 337

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C  + +    + IH    K  L  D  + N+++++YS    ++  ++ F      DV+S
Sbjct: 338 ACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVS 397

Query: 219 WTRMM-GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           WT ++ G   + ++ G  L +F E+  S    D   +  ++S  A L  +K G+Q+HA  
Sbjct: 398 WTSLIVGHVQNGQFEG-GLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYA 456

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           +  G+ +   + NS I MY+KCGD+DS+   F +     +VSW+ +IS   Q+GCA+EA+
Sbjct: 457 IKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAV 516

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGE-------LAALEICLQLHGIAFEAGFPRYRSV 390
           + F  M+     + + IT + +L A          L   EI  + HGI      P  +  
Sbjct: 517 DLFELMKGSGI-APNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHGIT-----PNVKH- 569

Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
             C++    + G +  A     + GF  D V W +++    V+   +T   +  ++ E  
Sbjct: 570 SACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSACRVHKATDTGKRVAERVIEL- 628

Query: 451 EVPDSSTYLSILNACGHAGLTNDGLVIFNQM 481
           E   +++Y+ + N    AG+      I N M
Sbjct: 629 EPEAAASYVLLYNIYNDAGIQMPATEIRNLM 659



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 109/373 (29%), Positives = 182/373 (48%), Gaps = 12/373 (3%)

Query: 145 GLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAA 204
           GL  ++VT   +++     GS    +L H   IK      + + N++L MY    + D A
Sbjct: 14  GLPLDSVTYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETDVA 73

Query: 205 IQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAIL 264
            ++F  M  ++V+SW  ++  +    +  + + +F+E R S +  D     N +SV    
Sbjct: 74  KKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRT 133

Query: 265 GDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAII 324
            DL+ G+ +HA + + GL   + L+NS+I MY KCG +D +R VF    E   VSW ++I
Sbjct: 134 LDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLI 193

Query: 325 SGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGE--LAALEICLQLHGIAFEA 382
           +GYV+ G   E L   +KM +   + ++S  L S L A G    +++E    LHG A + 
Sbjct: 194 AGYVRIGSNDEMLRLLVKMLRHGLN-LNSYALGSALKACGSNFSSSIECGKMLHGCAVKL 252

Query: 383 GFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGY-----GVNGHGE 437
           G      V   L+ +Y+K G+++ A  +F+ M    +VV +N +I G+       +    
Sbjct: 253 GLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPD-PNVVMYNAMIAGFLQMETMADEFAN 311

Query: 438 TALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYG-C 496
            A+ L+ +M   G  P   T+ SIL AC        G  I  Q+ + N    S E  G  
Sbjct: 312 EAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYN--LQSDEFIGNA 369

Query: 497 VVDLLARAGCLSD 509
           +V+L + +G + D
Sbjct: 370 LVELYSLSGSIED 382


>gi|15229605|ref|NP_190543.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75183390|sp|Q9M2Y4.1|PP276_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49740
 gi|6723419|emb|CAB66912.1| putative protein [Arabidopsis thaliana]
 gi|332645063|gb|AEE78584.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 737

 Score =  261 bits (668), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 172/563 (30%), Positives = 295/563 (52%), Gaps = 40/563 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVS-WSIVIHGYSINGFHEKSMKAFSHM 62
           D Y+ + LLS  FK G I+ A  +FD++PE++ V+ W+ +I G   +G+HE S++ F  M
Sbjct: 122 DVYSWTTLLSASFKLGDIEYAFEVFDKMPERDDVAIWNAMITGCKESGYHETSVELFREM 181

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK--FGLESDLFEGLKNPYL----- 115
              G+  + F    +L +     +L+  + +H L++K  F + S +   L   Y      
Sbjct: 182 HKLGVRHDKFGFATIL-SMCDYGSLDFGKQVHSLVIKAGFFIASSVVNALITMYFNCQVV 240

Query: 116 -----------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                            V+ N ++ G    K   +++L+F     + L P  +T ++V+ 
Sbjct: 241 VDACLVFEETDVAVRDQVTFNVVIDGLAGFKR-DESLLVFRKMLEASLRPTDLTFVSVMG 299

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C      A+   +HGL IK G      V+N+ + MYS   D  AA ++F  +E KD+++
Sbjct: 300 SC---SCAAMGHQVHGLAIKTGYEKYTLVSNATMTMYSSFEDFGAAHKVFESLEEKDLVT 356

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           W  M+  +   +    A+ +++ M    +  D     +L++ +    DL   + + A ++
Sbjct: 357 WNTMISSYNQAKLGKSAMSVYKRMHIIGVKPDEFTFGSLLATSL---DLDVLEMVQACII 413

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
             GL S++ +SN++I+ YSK G ++ +  +F +   K+L+SW AIISG+  NG   E L 
Sbjct: 414 KFGLSSKIEISNALISAYSKNGQIEKADLLFERSLRKNLISWNAIISGFYHNGFPFEGLE 473

Query: 339 QFIKMRQEKTDSV-DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
           +F  + + +   + D+ TL ++L+     ++L +  Q H      G  +   + N LI+ 
Sbjct: 474 RFSCLLESEVRILPDAYTLSTLLSICVSTSSLMLGSQTHAYVLRHGQFKETLIGNALINM 533

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV-PDSS 456
           YS+CG +  +  VF +M   +DVVSWN++I  Y  +G GE A+  Y  M + G+V PD++
Sbjct: 534 YSQCGTIQNSLEVFNQMS-EKDVVSWNSLISAYSRHGEGENAVNTYKTMQDEGKVIPDAA 592

Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK 516
           T+ ++L+AC HAGL  +GL IFN M+E + V  + +H+ C+VDLL RAG L +A  L  K
Sbjct: 593 TFSAVLSACSHAGLVEEGLEIFNSMVEFHGVIRNVDHFSCLVDLLGRAGHLDEAESLV-K 651

Query: 517 LLE---GMGPNIWRALLSGCVLH 536
           + E   G   ++W AL S C  H
Sbjct: 652 ISEKTIGSRVDVWWALFSACAAH 674



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 130/501 (25%), Positives = 232/501 (46%), Gaps = 53/501 (10%)

Query: 11  LLSNYFKSGKIKEAENLFDE--IPEKNVVSWSIVIHGYSINGF-HEKSMKAFSHMMLSGL 67
           L++ YF    + +A  +F+E  +  ++ V++++VI G  + GF  ++S+  F  M+ + L
Sbjct: 230 LITMYFNCQVVVDACLVFEETDVAVRDQVTFNVVIDG--LAGFKRDESLLVFRKMLEASL 287

Query: 68  LPNSFTMVGVL----VAAAGLQNLELARSIHGLMVK----------------------FG 101
            P   T V V+     AA G Q       +HGL +K                      FG
Sbjct: 288 RPTDLTFVSVMGSCSCAAMGHQ-------VHGLAIKTGYEKYTLVSNATMTMYSSFEDFG 340

Query: 102 LESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +FE L+   LV+ N +++ +   KL + A+ ++      G+ P+  T  +++   +
Sbjct: 341 AAHKVFESLEEKDLVTWNTMISSYNQAKLGKSAMSVYKRMHIIGVKPDEFTFGSLLATSL 400

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            L    + E++    IK GL   + ++N+++  YS    ++ A  +F     K++ISW  
Sbjct: 401 DLD---VLEMVQACIIKFGLSSKIEISNALISAYSKNGQIEKADLLFERSLRKNLISWNA 457

Query: 222 MMGLFVDFEYAGDALKIFREMRKS--RIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           ++  F    +  + L+ F  + +S  RI+ D   L  L+S+      L  G Q HA V+ 
Sbjct: 458 IISGFYHNGFPFEGLERFSCLLESEVRILPDAYTLSTLLSICVSTSSLMLGSQTHAYVLR 517

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G   E  + N++I MYS+CG + +S  VFNQ++EK +VSW ++IS Y ++G    A+N 
Sbjct: 518 HGQFKETLIGNALINMYSQCGTIQNSLEVFNQMSEKDVVSWNSLISAYSRHGEGENAVNT 577

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFE-AGFPRYRSVQNCLISSY 398
           +  M+ E     D+ T  ++L+A      +E  L++     E  G  R     +CL+   
Sbjct: 578 YKTMQDEGKVIPDAATFSAVLSACSHAGLVEEGLEIFNSMVEFHGVIRNVDHFSCLVDLL 637

Query: 399 SKCGNVD----LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALA-LYHKMTETGEVP 453
            + G++D    L  I  + +G   DV  W  +        HG+  L  +  K+    E  
Sbjct: 638 GRAGHLDEAESLVKISEKTIGSRVDV--WWALFSACA--AHGDLKLGKMVAKLLMEKEKD 693

Query: 454 DSSTYLSILNACGHAGLTNDG 474
           D S Y+ + N    AG+  + 
Sbjct: 694 DPSVYVQLSNIYAGAGMWKEA 714



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 100/384 (26%), Positives = 177/384 (46%), Gaps = 44/384 (11%)

Query: 115 LVSCNAIVAGFINNKLFQQAVLLF-NFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIH 173
           L++ N  + G   +   + A+ LF +  R + L P+  ++   I     L        +H
Sbjct: 21  LLNLNRRLTGLTRSGENRNALKLFADVHRCTTLRPDQYSVSLAITTARHLRDTIFGGQVH 80

Query: 174 GLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL---FVDFE 230
              I+ GL+    V+N++L +Y  L +L +  + F E++  DV SWT ++       D E
Sbjct: 81  CYAIRSGLLCHSHVSNTLLSLYERLGNLASLKKKFDEIDEPDVYSWTTLLSASFKLGDIE 140

Query: 231 YAGD-----------------------------ALKIFREMRKSRIICDTVALLNLISVN 261
           YA +                             ++++FREM K  +  D      ++S+ 
Sbjct: 141 YAFEVFDKMPERDDVAIWNAMITGCKESGYHETSVELFREMHKLGVRHDKFGFATILSM- 199

Query: 262 AILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQ--ITEKSLVS 319
              G L  GKQ+H+ V+  G      + N++I MY  C  +  +  VF +  +  +  V+
Sbjct: 200 CDYGSLDFGKQVHSLVIKAGFFIASSVVNALITMYFNCQVVVDACLVFEETDVAVRDQVT 259

Query: 320 WTAIISGYVQNGCAR-EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGI 378
           +  +I G    G  R E+L  F KM +      D +T VS++   G  +   +  Q+HG+
Sbjct: 260 FNVVIDGLA--GFKRDESLLVFRKMLEASLRPTD-LTFVSVM---GSCSCAAMGHQVHGL 313

Query: 379 AFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGET 438
           A + G+ +Y  V N  ++ YS   +   A+ VFE +   +D+V+WNT+I  Y     G++
Sbjct: 314 AIKTGYEKYTLVSNATMTMYSSFEDFGAAHKVFESLE-EKDLVTWNTMISSYNQAKLGKS 372

Query: 439 ALALYHKMTETGEVPDSSTYLSIL 462
           A+++Y +M   G  PD  T+ S+L
Sbjct: 373 AMSVYKRMHIIGVKPDEFTFGSLL 396



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 122/270 (45%), Gaps = 35/270 (12%)

Query: 234 DALKIFREMRK-SRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSI 292
           +ALK+F ++ + + +  D  ++   I+    L D   G Q+H   +  GL     +SN++
Sbjct: 39  NALKLFADVHRCTTLRPDQYSVSLAITTARHLRDTIFGGQVHCYAIRSGLLCHSHVSNTL 98

Query: 293 IAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV- 351
           +++Y + G+L S +  F++I E  + SWT ++S   + G    A   F KM +    ++ 
Sbjct: 99  LSLYERLGNLASLKKKFDEIDEPDVYSWTTLLSASFKLGDIEYAFEVFDKMPERDDVAIW 158

Query: 352 ------------------------------DSITLVSILTASGELAALEICLQLHGIAFE 381
                                         D     +IL+   +  +L+   Q+H +  +
Sbjct: 159 NAMITGCKESGYHETSVELFREMHKLGVRHDKFGFATILSMC-DYGSLDFGKQVHSLVIK 217

Query: 382 AGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGF-LRDVVSWNTIIYGYGVNGHGETAL 440
           AGF    SV N LI+ Y  C  V  A +VFEE    +RD V++N +I G       E+ L
Sbjct: 218 AGFFIASSVVNALITMYFNCQVVVDACLVFEETDVAVRDQVTFNVVIDGLAGFKRDES-L 276

Query: 441 ALYHKMTETGEVPDSSTYLSILNACGHAGL 470
            ++ KM E    P   T++S++ +C  A +
Sbjct: 277 LVFRKMLEASLRPTDLTFVSVMGSCSCAAM 306



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 74/178 (41%), Gaps = 31/178 (17%)

Query: 324 ISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG 383
           ++G  ++G  R AL  F  + +  T   D  ++   +T +  L       Q+H  A  +G
Sbjct: 28  LTGLTRSGENRNALKLFADVHRCTTLRPDQYSVSLAITTARHLRDTIFGGQVHCYAIRSG 87

Query: 384 FPRYRSVQNCLISSYSKCGN-------------------------------VDLAYIVFE 412
              +  V N L+S Y + GN                               ++ A+ VF+
Sbjct: 88  LLCHSHVSNTLLSLYERLGNLASLKKKFDEIDEPDVYSWTTLLSASFKLGDIEYAFEVFD 147

Query: 413 EMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGL 470
           +M    DV  WN +I G   +G+ ET++ L+ +M + G   D   + +IL+ C +  L
Sbjct: 148 KMPERDDVAIWNAMITGCKESGYHETSVELFREMHKLGVRHDKFGFATILSMCDYGSL 205


>gi|225435444|ref|XP_002282803.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g40720-like [Vitis vinifera]
          Length = 854

 Score =  261 bits (668), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 170/619 (27%), Positives = 310/619 (50%), Gaps = 62/619 (10%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           +P+ ++ L+  Y +   ++    LFD +  +N+VSW+ +I GY   G + K+++ F  M+
Sbjct: 189 NPHVATALIGFYLRF-DMRVLPLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQML 247

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------- 106
           +  +  +  TM+  + A A L +L+L + IH L +KF    DL                 
Sbjct: 248 VDEVKFDCVTMLVAVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLE 307

Query: 107 -----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                FE + N      N++++ +      ++A+ LF   +  G+  +  T++ ++  C 
Sbjct: 308 SSHQLFESVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCE 367

Query: 162 ALGSRALC-ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
            L S  L  + +H   IK G+ +D S+ N++L MY+ L  +++  +IF  M+  D+ISW 
Sbjct: 368 ELASGLLKGKSLHAHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWN 427

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+           A ++F  MR+S I  ++  ++++++    +  L  G+ +H  V+  
Sbjct: 428 TMILALARNTLRAQACELFERMRESEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMKH 487

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
            ++    L  ++  MY  CGD  ++R +F    ++ L+SW A+I+ YV+N  A +AL  F
Sbjct: 488 SIEINQPLRTALADMYMNCGDEATARDLFEGCPDRDLISWNAMIASYVKNNQAHKALLLF 547

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPR--YRSVQNCLISSY 398
            +M  E     +S+T++++L++   LA L     LH      GF      S+ N  I+ Y
Sbjct: 548 HRMISEAEP--NSVTIINVLSSFTHLATLPQGQSLHAYVTRRGFSLGLDLSLANAFITMY 605

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
           ++CG++  A  +F+ +   R+++SWN +I GYG+NG G  A+  + +M E G  P+  T+
Sbjct: 606 ARCGSLQSAENIFKTLP-KRNIISWNAMIAGYGMNGRGSDAMLAFSQMLEDGFRPNGVTF 664

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
           +S+L+AC H+G    GL +F+ M+++  V P   HY C+VDLLAR GC+ +A      + 
Sbjct: 665 VSVLSACSHSGFIEMGLQLFHSMVQDFNVTPELVHYSCIVDLLARGGCIDEAREFIDSMP 724

Query: 519 EGMGPNIWRALLSGCVLH---------------------------------VGRFQDAEA 545
                ++WRALLS C  +                                  G + +   
Sbjct: 725 IEPDASVWRALLSSCRAYSDAKQAKTIFEKLDKLEPMNAGNYVLLSNVYATAGLWLEVRR 784

Query: 546 LRSGSQKKGIIKIPGISFL 564
           +R+  ++KG+ K PGIS++
Sbjct: 785 IRTWLKEKGLRKPPGISWI 803



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 151/577 (26%), Positives = 278/577 (48%), Gaps = 34/577 (5%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTM 74
           Y K G +++A  +FD + +++VV W+ +++GY   G +E++M     M    L PNS TM
Sbjct: 98  YCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVGWGCYEEAMLLVREMGRENLRPNSRTM 157

Query: 75  VGVLVAAAGLQNLELARSIHGL----------------MVKFGLESD------LFEGLKN 112
           V +L+A  G   L L R +HG                 ++ F L  D      LF+ +  
Sbjct: 158 VALLLACEGASELRLGRGVHGYCLRNGMFDSNPHVATALIGFYLRFDMRVLPLLFDLMVV 217

Query: 113 PYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELI 172
             +VS NA+++G+ +   + +A+ LF       +  + VTML  ++ C  LGS  L + I
Sbjct: 218 RNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELGSLKLGKQI 277

Query: 173 HGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYA 232
           H L IK   + D+ + N++L+MYS    L+++ Q+F  +  +D   W  M+  +  F   
Sbjct: 278 HQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVPNRDAPLWNSMISAYAAFGCH 337

Query: 233 GDALKIFREMRKSRIICDTVALLNLISV-NAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
            +A+ +F  M+   +  D   ++ ++S+   +   L +GK LHA V+  G++ +  L N+
Sbjct: 338 EEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKSLHAHVIKSGMRIDASLGNA 397

Query: 292 IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
           +++MY++   ++S + +F+++    ++SW  +I    +N    +A   F +MR+ +    
Sbjct: 398 LLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRAQACELFERMRESEIKP- 456

Query: 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVF 411
           +S T++SIL A  ++  L+    +HG   +      + ++  L   Y  CG+   A  +F
Sbjct: 457 NSYTIISILAACEDVTCLDFGRSIHGYVMKHSIEINQPLRTALADMYMNCGDEATARDLF 516

Query: 412 EEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLT 471
           E     RD++SWN +I  Y  N     AL L+H+M    E P+S T +++L++  H    
Sbjct: 517 EGCPD-RDLISWNAMIASYVKNNQAHKALLLFHRMISEAE-PNSVTIINVLSSFTHLATL 574

Query: 472 NDGLVIFNQMIEEN-KVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALL 530
             G  +   +      +          + + AR G L  A  +  K L       W A++
Sbjct: 575 PQGQSLHAYVTRRGFSLGLDLSLANAFITMYARCGSLQSAENIF-KTLPKRNIISWNAMI 633

Query: 531 SGCVLHVGRFQDA-----EALRSGSQKKGIIKIPGIS 562
           +G  ++ GR  DA     + L  G +  G+  +  +S
Sbjct: 634 AGYGMN-GRGSDAMLAFSQMLEDGFRPNGVTFVSVLS 669



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 126/459 (27%), Positives = 214/459 (46%), Gaps = 25/459 (5%)

Query: 30  EIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLEL 89
           +I  K+   W+ VI   +     +  + A++ M   G+LPN+ T+  VL A A    +E 
Sbjct: 12  KIQIKDPKHWNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVER 71

Query: 90  ARSIH-------------------GLMVKFGLESD---LFEGLKNPYLVSCNAIVAGFIN 127
            +SIH                       K G   D   +F+ + +  +V  NA+V G++ 
Sbjct: 72  GKSIHRSIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVG 131

Query: 128 NKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSV 187
              +++A+LL        L PN+ TM+ ++  C       L   +HG  ++ G+      
Sbjct: 132 WGCYEEAMLLVREMGRENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPH 191

Query: 188 NNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRI 247
             + L  +    D+     +F  M  ++++SW  M+  + D      AL++F +M    +
Sbjct: 192 VATALIGFYLRFDMRVLPLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEV 251

Query: 248 ICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRS 307
             D V +L  +   A LG LK GKQ+H   +      +L + N+++ MYS  G L+SS  
Sbjct: 252 KFDCVTMLVAVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQ 311

Query: 308 VFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELA 367
           +F  +  +    W ++IS Y   GC  EA++ FI+M+ E     D  T+V +L+   ELA
Sbjct: 312 LFESVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKK-DERTVVIMLSMCEELA 370

Query: 368 A-LEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTI 426
           + L     LH    ++G     S+ N L+S Y++   V+    +F+ M  + D++SWNT+
Sbjct: 371 SGLLKGKSLHAHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFDRMKGV-DIISWNTM 429

Query: 427 IYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
           I     N     A  L+ +M E+   P+S T +SIL AC
Sbjct: 430 ILALARNTLRAQACELFERMRESEIKPNSYTIISILAAC 468



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 98/390 (25%), Positives = 188/390 (48%), Gaps = 27/390 (6%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           ID    + LLS Y +   ++  + +FD +   +++SW+ +I   + N    ++ + F  M
Sbjct: 390 IDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRAQACELFERM 449

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE------------------- 103
             S + PNS+T++ +L A   +  L+  RSIHG ++K  +E                   
Sbjct: 450 RESEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMKHSIEINQPLRTALADMYMNCGDE 509

Query: 104 ---SDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
               DLFEG  +  L+S NA++A ++ N    +A+LLF+    S   PN+VT++ V+   
Sbjct: 510 ATARDLFEGCPDRDLISWNAMIASYVKNNQAHKALLLFHRMI-SEAEPNSVTIINVLSSF 568

Query: 161 VALGSRALCELIHGLTIKLG--LILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
             L +    + +H    + G  L LD+S+ N+ + MY+    L +A  IF+ +  +++IS
Sbjct: 569 THLATLPQGQSLHAYVTRRGFSLGLDLSLANAFITMYARCGSLQSAENIFKTLPKRNIIS 628

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQL-HAQV 277
           W  M+  +       DA+  F +M +     + V  ++++S  +  G ++ G QL H+ V
Sbjct: 629 WNAMIAGYGMNGRGSDAMLAFSQMLEDGFRPNGVTFVSVLSACSHSGFIEMGLQLFHSMV 688

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISGYVQNGCAREA 336
               +  EL   + I+ + ++ G +D +R   + +  E     W A++S       A++A
Sbjct: 689 QDFNVTPELVHYSCIVDLLARGGCIDEAREFIDSMPIEPDASVWRALLSSCRAYSDAKQA 748

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGEL 366
              F K+ + +  +  +  L+S + A+  L
Sbjct: 749 KTIFEKLDKLEPMNAGNYVLLSNVYATAGL 778



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 126/261 (48%), Gaps = 4/261 (1%)

Query: 210 EMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKR 269
           +++ KD   W  ++    + +     L  + +M    ++ +   L  ++   A    ++R
Sbjct: 12  KIQIKDPKHWNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVER 71

Query: 270 GKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQ 329
           GK +H  +    L  ++R+  +++  Y KCG ++ +R VF+ ++++ +V W A++ GYV 
Sbjct: 72  GKSIHRSIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVG 131

Query: 330 NGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG-FPRYR 388
            GC  EA+    +M +E     +S T+V++L A    + L +   +HG     G F    
Sbjct: 132 WGCYEEAMLLVREMGRENLRP-NSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNP 190

Query: 389 SVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTE 448
            V   LI  Y +  ++ +  ++F+ M  +R++VSWN +I GY   G    AL L+ +M  
Sbjct: 191 HVATALIGFYLRF-DMRVLPLLFDLM-VVRNIVSWNAMISGYYDVGDYFKALELFVQMLV 248

Query: 449 TGEVPDSSTYLSILNACGHAG 469
                D  T L  + AC   G
Sbjct: 249 DEVKFDCVTMLVAVQACAELG 269


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  261 bits (668), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 184/621 (29%), Positives = 304/621 (48%), Gaps = 72/621 (11%)

Query: 14  NYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKS--MKAFSHMMLSGLLPNS 71
           ++  SG +  A +LFD+IP  +V +++ +I  YS +     +  +  +  M+   + PN+
Sbjct: 66  DHIASGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNN 125

Query: 72  FTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY--------------- 114
           +T    L A + L +    R+IH   +  GL++DLF    L + Y               
Sbjct: 126 YTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFAT 185

Query: 115 -----LVSCNAIVAGFINNKLFQQAV--LLFNFFRGSGLVPNAVTMLTVIRGCVALGSRA 167
                LV+ NA++AG+ ++ ++  AV  LL    +   L PNA T++ ++      G+ A
Sbjct: 186 MPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALA 245

Query: 168 LCELIHGLTI----------KLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
               +H   I          K  L   V +  ++LDMY+    L  A ++F  M  ++ +
Sbjct: 246 QGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEV 305

Query: 218 SWTRMMGLFVDFEYAGDALKIFREM-RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQ 276
           +W+ ++G FV       A  +F+ M  +        ++ + +   A L  L+ G+QLHA 
Sbjct: 306 TWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHAL 365

Query: 277 VVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
           +   G+ ++L   NS+++MY+K G +D + ++F+++  K  VS++A++SGYVQNG A EA
Sbjct: 366 LAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEA 425

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
              F KM+    +  D+ T+VS++ A   LAAL+     HG     G     S+ N LI 
Sbjct: 426 FLVFKKMQACNVEP-DAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALID 484

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
            Y+KCG +DL+  VF  M   RD+VSWNT+I GYG++G G+ A AL+ +M   G  PD  
Sbjct: 485 MYAKCGRIDLSRQVFNMMPS-RDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGV 543

Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK 516
           T++ +L+AC H+GL  +G   F+ M     + P  EHY C+VDLL+R G L +A      
Sbjct: 544 TFICLLSACSHSGLVIEGKHWFHVMRHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQS 603

Query: 517 LLEGMGPNIWRALLSGCVLH---------------------------------VGRFQDA 543
           +       +W ALL  C ++                                  GRF +A
Sbjct: 604 MPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEA 663

Query: 544 EALRSGSQKKGIIKIPGISFL 564
             +R   + +G  K PG S++
Sbjct: 664 AEVRIIQKVQGFKKSPGCSWI 684



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 123/463 (26%), Positives = 219/463 (47%), Gaps = 43/463 (9%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAF--SH 61
           D + S+ LL  Y K   + +A ++F  +P +++V+W+ ++ GY+ +G +  ++       
Sbjct: 159 DLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQ 218

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------- 105
           M +  L PN+ T+V +L   A    L    S+H   ++  L S+                
Sbjct: 219 MQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTA 278

Query: 106 ----------------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLV-P 148
                           +F+ +     V+ +A++ GF+      QA LLF      GL   
Sbjct: 279 LLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFL 338

Query: 149 NAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIF 208
           +  ++ + +R C +L    + E +H L  K G+  D++  NS+L MY+    +D AI +F
Sbjct: 339 SPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALF 398

Query: 209 REMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLK 268
            EM  KD +S++ ++  +V    A +A  +F++M+   +  D   +++LI   + L  L+
Sbjct: 399 DEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQ 458

Query: 269 RGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYV 328
            G+  H  V++ GL SE  + N++I MY+KCG +D SR VFN +  + +VSW  +I+GY 
Sbjct: 459 HGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYG 518

Query: 329 QNGCAREALNQFIKMRQE--KTDSVDSITLVSILTASGELAALEICLQL--HGIAFEAGF 384
            +G  +EA   F++M       D V  I L+S  + SG +   +    +  HG       
Sbjct: 519 IHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGLTPRM 578

Query: 385 PRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
             Y     C++   S+ G +D AY   + M    DV  W  ++
Sbjct: 579 EHY----ICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALL 617



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 110/249 (44%), Gaps = 46/249 (18%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           LLS Y K+G I +A  LFDE+  K+ VS+S ++ GY  NG  E++   F  M    + P+
Sbjct: 381 LLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPD 440

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFE 108
           + TMV ++ A + L  L+  R  HG ++  GL S+                      +F 
Sbjct: 441 AATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFN 500

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC-----VAL 163
            + +  +VS N ++AG+  + L ++A  LF      G  P+ VT + ++  C     V  
Sbjct: 501 MMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIE 560

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMD-------LDAAIQIFREMECK-D 215
           G      + HG  +              ++ Y C++D       LD A +  + M  + D
Sbjct: 561 GKHWFHVMRHGYGL-----------TPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRAD 609

Query: 216 VISWTRMMG 224
           V  W  ++G
Sbjct: 610 VRVWVALLG 618


>gi|302768409|ref|XP_002967624.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
 gi|300164362|gb|EFJ30971.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
          Length = 795

 Score =  261 bits (668), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 161/564 (28%), Positives = 287/564 (50%), Gaps = 36/564 (6%)

Query: 4   DPYNSSKLLSN-----YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKA 58
           D      LL N     Y + G    A ++FD + ++NVV+W+ +I  ++  G    +M  
Sbjct: 44  DERPDESLLENIVIQMYLRCGCTDLALDVFDRMKDQNVVAWTSLISAFTFAGHFGDAMVL 103

Query: 59  FSHMMLSGLLPNSFTMVGVLVAAAGLQ-NLELARSIHGLMVKFGLESD------------ 105
           F  M+LSG+ P+  T   +L+  +G + NL+  + +H  +++ G E D            
Sbjct: 104 FRKMLLSGVSPDRITFTSILLKWSGRERNLDEGKRVHSHIMQTGYEGDRMVMNLVVEMYG 163

Query: 106 ----------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLT 155
                     +F+ +++P + S   I+A +  N    + + L +    +G+ P+  T  T
Sbjct: 164 KCGDVEQAGNVFDSIQDPNVFSWTIIIAAYAQNGHCMEVLRLLSRMNQAGVKPDGYTFTT 223

Query: 156 VIRGCVALGSRALCELIHGLTIK-LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
           V+  C A+G+    +++H  TI   GL  D +V  +++++Y     L+ A  +F +++ K
Sbjct: 224 VLGACTAVGALEEAKILHAATISSTGLDRDAAVGTALINLYGKCGALEEAFGVFVQIDNK 283

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
           D++SW+ M+  F     A  A+++   M    +  + V  +N++     L   + GK++H
Sbjct: 284 DIVSWSSMIAAFAQSGQAKSAIQLLMLMDLEGVRPNNVTFVNVLEAVTSLKAFQYGKEIH 343

Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
           A++V  G   ++ L+++++ MY   G ++++RS+F    E+ +VSW+++I+GY QN    
Sbjct: 344 ARIVQAGYSDDVCLTSALVKMYCNWGWVETARSIFESSRERDVVSWSSMIAGYSQNESPA 403

Query: 335 EALNQFIKMRQEKTDSV--DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN 392
            AL+ F   R+ + D V  +S+T VS + A   + AL    QLH      G  +   V  
Sbjct: 404 RALSLF---REMEVDGVQPNSVTFVSAIDACAGVGALRRGTQLHERVRCLGLDKDVPVAT 460

Query: 393 CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV 452
            L++ Y KCG ++ A  VF  M   +++++W +I   YG NGHG  +L L H M   G  
Sbjct: 461 ALVNLYGKCGRLEEAEAVFLGMK-KKNLLTWTSIAMAYGQNGHGSRSLKLLHGMELQGMK 519

Query: 453 PDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASG 512
           PD   +++IL +C +AG  + GL  +N M ++  + P+ EH GC+VD+L RAG L  A  
Sbjct: 520 PDGIVFVAILVSCNYAGQMSKGLHYYNLMTQDFGIAPAVEHCGCMVDILGRAGKLEAAEQ 579

Query: 513 LAGKLLEGMGPNIWRALLSGCVLH 536
           L    ++      W  LL+ C  H
Sbjct: 580 LI-NTMKFESSLAWMMLLTACKAH 602



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 120/466 (25%), Positives = 221/466 (47%), Gaps = 35/466 (7%)

Query: 6   YNSSKLLSN-----YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           Y   +++ N     Y K G +++A N+FD I + NV SW+I+I  Y+ NG   + ++  S
Sbjct: 148 YEGDRMVMNLVVEMYGKCGDVEQAGNVFDSIQDPNVFSWTIIIAAYAQNGHCMEVLRLLS 207

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK-FGLESD-------------- 105
            M  +G+ P+ +T   VL A   +  LE A+ +H   +   GL+ D              
Sbjct: 208 RMNQAGVKPDGYTFTTVLGACTAVGALEEAKILHAATISSTGLDRDAAVGTALINLYGKC 267

Query: 106 --------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
                   +F  + N  +VS ++++A F  +   + A+ L       G+ PN VT + V+
Sbjct: 268 GALEEAFGVFVQIDNKDIVSWSSMIAAFAQSGQAKSAIQLLMLMDLEGVRPNNVTFVNVL 327

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
               +L +    + IH   ++ G   DV + ++++ MY     ++ A  IF     +DV+
Sbjct: 328 EAVTSLKAFQYGKEIHARIVQAGYSDDVCLTSALVKMYCNWGWVETARSIFESSRERDVV 387

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           SW+ M+  +   E    AL +FREM    +  ++V  ++ I   A +G L+RG QLH +V
Sbjct: 388 SWSSMIAGYSQNESPARALSLFREMEVDGVQPNSVTFVSAIDACAGVGALRRGTQLHERV 447

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
              GL  ++ ++ +++ +Y KCG L+ + +VF  + +K+L++WT+I   Y QNG    +L
Sbjct: 448 RCLGLDKDVPVATALVNLYGKCGRLEEAEAVFLGMKKKNLLTWTSIAMAYGQNGHGSRSL 507

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN--CLI 395
                M  +     D I  V+IL +      +   L  + +  +  F    +V++  C++
Sbjct: 508 KLLHGMELQGMKP-DGIVFVAILVSCNYAGQMSKGLHYYNLMTQ-DFGIAPAVEHCGCMV 565

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALA 441
               + G ++ A  +   M F    ++W  ++       H +TA A
Sbjct: 566 DILGRAGKLEAAEQLINTMKF-ESSLAWMMLL--TACKAHNDTARA 608



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 93/308 (30%), Positives = 166/308 (53%), Gaps = 11/308 (3%)

Query: 166 RALCE--LIHGLTIKLGLILDVSVNNSVLD-----MYSCLMDLDAAIQIFREMECKDVIS 218
           RAL E   +HGL ++  L+ D   + S+L+     MY      D A+ +F  M+ ++V++
Sbjct: 24  RALPEGKRVHGLVMRESLLQDERPDESLLENIVIQMYLRCGCTDLALDVFDRMKDQNVVA 83

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLN-LISVNAILGDLKRGKQLHAQV 277
           WT ++  F    + GDA+ +FR+M  S +  D +   + L+  +    +L  GK++H+ +
Sbjct: 84  WTSLISAFTFAGHFGDAMVLFRKMLLSGVSPDRITFTSILLKWSGRERNLDEGKRVHSHI 143

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           +  G + +  + N ++ MY KCGD++ + +VF+ I + ++ SWT II+ Y QNG   E L
Sbjct: 144 MQTGYEGDRMVMNLVVEMYGKCGDVEQAGNVFDSIQDPNVFSWTIIIAAYAQNGHCMEVL 203

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEA-GFPRYRSVQNCLIS 396
               +M Q      D  T  ++L A   + ALE    LH     + G  R  +V   LI+
Sbjct: 204 RLLSRMNQAGVKP-DGYTFTTVLGACTAVGALEEAKILHAATISSTGLDRDAAVGTALIN 262

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
            Y KCG ++ A+ VF ++   +D+VSW+++I  +  +G  ++A+ L   M   G  P++ 
Sbjct: 263 LYGKCGALEEAFGVFVQIDN-KDIVSWSSMIAAFAQSGQAKSAIQLLMLMDLEGVRPNNV 321

Query: 457 TYLSILNA 464
           T++++L A
Sbjct: 322 TFVNVLEA 329



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 132/278 (47%), Gaps = 8/278 (2%)

Query: 242 MRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR-----LSNSIIAMY 296
           M    I  +  A   +++  + L  L  GK++H  V+   L  + R     L N +I MY
Sbjct: 1   MEAREIQAEISACAAILTACSDLRALPEGKRVHGLVMRESLLQDERPDESLLENIVIQMY 60

Query: 297 SKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITL 356
            +CG  D +  VF+++ ++++V+WT++IS +   G   +A+  F KM      S D IT 
Sbjct: 61  LRCGCTDLALDVFDRMKDQNVVAWTSLISAFTFAGHFGDAMVLFRKMLLSGV-SPDRITF 119

Query: 357 VSILTA-SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMG 415
            SIL   SG    L+   ++H    + G+   R V N ++  Y KCG+V+ A  VF+ + 
Sbjct: 120 TSILLKWSGRERNLDEGKRVHSHIMQTGYEGDRMVMNLVVEMYGKCGDVEQAGNVFDSIQ 179

Query: 416 FLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGL 475
              +V SW  II  Y  NGH    L L  +M + G  PD  T+ ++L AC   G   +  
Sbjct: 180 D-PNVFSWTIIIAAYAQNGHCMEVLRLLSRMNQAGVKPDGYTFTTVLGACTAVGALEEAK 238

Query: 476 VIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL 513
           ++    I    +         +++L  + G L +A G+
Sbjct: 239 ILHAATISSTGLDRDAAVGTALINLYGKCGALEEAFGV 276


>gi|359486457|ref|XP_002275344.2| PREDICTED: pentatricopeptide repeat-containing protein At2g40720
           [Vitis vinifera]
          Length = 836

 Score =  261 bits (668), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 171/622 (27%), Positives = 301/622 (48%), Gaps = 58/622 (9%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEK-NVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           DPY  + L+  Y    +  EA +LF ++  + N+V+W+++I G+  NG  EKS++ +S  
Sbjct: 176 DPYLETALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLA 235

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
                   S +  G   A +  + L+  R +H  ++K   + D                 
Sbjct: 236 KNENCKLVSASFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSV 295

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +F+ + +  +   NA+++ FI N     A+ L+N  +      ++ T+ +++ GC
Sbjct: 296 EDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGC 355

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             +GS      +H   IK  +  +V++ +++L MY      + A  +F  M+ +DV++W 
Sbjct: 356 SVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVFYTMKERDVVAWG 415

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+  F       DAL +FR M K  +  D+  + ++IS    L +++ G  +H   +  
Sbjct: 416 SMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVISAGLGLENVELGHLIHGFAIKR 475

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           GL+S++ ++ S++ MYSK G  +S+  VF+ +  K+LV+W ++IS Y  NG    ++N  
Sbjct: 476 GLESDVFVACSLVDMYSKFGFAESAEMVFSSMPNKNLVAWNSMISCYSWNGLPEMSINLL 535

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            ++ Q     +DS+++ ++L A   +AAL     LH        P    V+N LI  Y K
Sbjct: 536 PQILQHGF-YLDSVSITTVLVAVSSVAALLKGKTLHAYQIRLQIPSDLQVENALIDMYVK 594

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CG +  A ++FE M   R++V+WN++I GYG +G+ E A+ L+ +M  +   PD  T+L+
Sbjct: 595 CGCLKYAQLIFENMP-RRNLVTWNSMIAGYGSHGNCEEAVRLFKEMKRSETAPDEVTFLA 653

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           ++ +C H+G+  +GL +F  M  E  V+P  EHY  VVDLL RAG L DA      +   
Sbjct: 654 LITSCSHSGMVEEGLNLFQLMRIEYGVEPRMEHYASVVDLLGRAGRLDDAYSFIRGMPID 713

Query: 521 MGPNIWRALLSGCVLH---------------------------------VGRFQDAEALR 547
              ++W  LL  C  H                                 V  +  A  LR
Sbjct: 714 ADRSVWLCLLFACRAHRNMELGELVADNLLKMEPARGSNYVPLLNLYGEVEMWDRAANLR 773

Query: 548 SGSQKKGIIKIPGISFLNSTSR 569
           +  + +G+ K PG S++   +R
Sbjct: 774 ASMKGRGLKKSPGCSWIEVKNR 795



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 131/535 (24%), Positives = 248/535 (46%), Gaps = 50/535 (9%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPE-----KNVVSWSIVIHGYSINGFHEKSMKA 58
           DPY ++ L++ Y K G +  A  +FD++ E      ++  W+ VI GY   G  E+ +  
Sbjct: 89  DPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFEEGLAQ 148

Query: 59  FSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------- 105
           F  M        S+ M G              R IHG +++   E D             
Sbjct: 149 FCRMQ-----ELSWYMAG--------------RQIHGYIIRNMFEGDPYLETALIGMYSS 189

Query: 106 ---------LFEGLKN-PYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLT 155
                    LF  L+N   +V+ N ++ GF+ N ++++++ L++  +       + +   
Sbjct: 190 CSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASFTG 249

Query: 156 VIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKD 215
               C           +H   IK+    D  V  S+L MY+    ++ A ++F ++  K+
Sbjct: 250 AFTACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKE 309

Query: 216 VISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
           V     M+  F+    A DAL ++ +M+      D+  + +L+S  +++G    G+ +HA
Sbjct: 310 VELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHA 369

Query: 276 QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
           +V+   +QS + + ++++ MY KCG  + + SVF  + E+ +V+W ++I+G+ QN   ++
Sbjct: 370 EVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKD 429

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLI 395
           AL+ F  M +E   + DS  + S+++A   L  +E+   +HG A + G      V   L+
Sbjct: 430 ALDLFRAMEKEGVKA-DSDVMTSVISAGLGLENVELGHLIHGFAIKRGLESDVFVACSLV 488

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
             YSK G  + A +VF  M   +++V+WN++I  Y  NG  E ++ L  ++ + G   DS
Sbjct: 489 DMYSKFGFAESAEMVFSSMPN-KNLVAWNSMISCYSWNGLPEMSINLLPQILQHGFYLDS 547

Query: 456 STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
            +  ++L A         G  +    I   ++    +    ++D+  + GCL  A
Sbjct: 548 VSITTVLVAVSSVAALLKGKTLHAYQIRL-QIPSDLQVENALIDMYVKCGCLKYA 601



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 108/434 (24%), Positives = 201/434 (46%), Gaps = 29/434 (6%)

Query: 49  NGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFE 108
            G + ++++  S    S L    FT   +L   A L NL   R+IH  +V  GL+SD   
Sbjct: 33  QGKYSQALELHSKTPHSALTTAKFTFPSLLKTCASLSNLYHGRTIHASIVTMGLQSD--- 89

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGS-GLVPNAVTMLTVIRGCVALGS-- 165
               PY+ +  +++  ++   L   A+ +F+    S    P+      VI G    G   
Sbjct: 90  ----PYIAT--SLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFE 143

Query: 166 ---RALCEL-----------IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM 211
                 C +           IHG  I+     D  +  +++ MYS       A  +F ++
Sbjct: 144 EGLAQFCRMQELSWYMAGRQIHGYIIRNMFEGDPYLETALIGMYSSCSRPMEAWSLFGKL 203

Query: 212 ECK-DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG 270
           E + ++++W  M+G FV+      +L+++   +       + +     +  +    L  G
Sbjct: 204 ENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASFTGAFTACSHGEVLDFG 263

Query: 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
           +Q+H  V+    Q +  +  S++ MY+K G ++ ++ VF+Q+ +K +    A+IS ++ N
Sbjct: 264 RQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIGN 323

Query: 331 GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV 390
           G A +AL  + KM+  +T  VDS T+ S+L+    + + +    +H    +       ++
Sbjct: 324 GRAYDALGLYNKMKAGET-PVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAI 382

Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
           Q+ L++ Y KCG+ + A  VF  M   RDVV+W ++I G+  N   + AL L+  M + G
Sbjct: 383 QSALLTMYYKCGSTEDADSVFYTMK-ERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEG 441

Query: 451 EVPDSSTYLSILNA 464
              DS    S+++A
Sbjct: 442 VKADSDVMTSVISA 455



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 103/446 (23%), Positives = 199/446 (44%), Gaps = 32/446 (7%)

Query: 117 SCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLT 176
           S N+ +   +    + QA+ L +    S L     T  ++++ C +L +      IH   
Sbjct: 22  SINSKIKALVQQGKYSQALELHSKTPHSALTTAKFTFPSLLKTCASLSNLYHGRTIHASI 81

Query: 177 IKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM-----ECKDVISWTRMMGLFVDFEY 231
           + +GL  D  +  S+++MY     L +A+Q+F +M        D+  W  ++  +  + +
Sbjct: 82  VTMGLQSDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGH 141

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
             + L  F  M++                   L     G+Q+H  ++    + +  L  +
Sbjct: 142 FEEGLAQFCRMQE-------------------LSWYMAGRQIHGYIIRNMFEGDPYLETA 182

Query: 292 IIAMYSKCGDLDSSRSVFNQITEKS-LVSWTAIISGYVQNGCAREALNQFIKMRQEKTDS 350
           +I MYS C     + S+F ++  +S +V+W  +I G+V+NG   ++L  +   + E    
Sbjct: 183 LIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKL 242

Query: 351 VDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIV 410
           V S +     TA      L+   Q+H    +  F     V   L++ Y+K G+V+ A  V
Sbjct: 243 V-SASFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKV 301

Query: 411 FEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNACGHAG 469
           F+++   ++V   N +I  +  NG    AL LY+KM + GE P DS T  S+L+ C   G
Sbjct: 302 FDQV-LDKEVELRNAMISAFIGNGRAYDALGLYNKM-KAGETPVDSFTISSLLSGCSVVG 359

Query: 470 LTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRAL 529
             + G  +  ++I+ + ++ +      ++ +  + G   DA  +   + E      W ++
Sbjct: 360 SYDFGRTVHAEVIKRS-MQSNVAIQSALLTMYYKCGSTEDADSVFYTMKE-RDVVAWGSM 417

Query: 530 LSGCVLHVGRFQDAEALRSGSQKKGI 555
           ++G      RF+DA  L    +K+G+
Sbjct: 418 IAG-FCQNRRFKDALDLFRAMEKEGV 442


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  261 bits (668), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 160/532 (30%), Positives = 281/532 (52%), Gaps = 26/532 (4%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSW-SIVIHGYSINGFHEKSMKAFSHMML 64
           Y+SS  L+ +F + K    E+ F   P+K   S     IH   +N  + K       +++
Sbjct: 50  YSSSLNLTTHFNNNKDDCNESTFK--PDKFYASLIDDSIHKTHLNQIYAK-------LLV 100

Query: 65  SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAG 124
           +GL    F +  ++  A+ +  +  AR              LF+   +P +   NAIV  
Sbjct: 101 TGLQYGGFLIAKLVNKASNIGEVSCARK-------------LFDKFPDPDVFLWNAIVRC 147

Query: 125 FINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILD 184
           +  +  F  A+ ++   + + + P+  +   V++ C AL +  +   +HG   + G   D
Sbjct: 148 YSRHGFFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQIFRHGFESD 207

Query: 185 VSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRK 244
           V V N ++ +Y+   ++  A  +F  +  + ++SWT ++  +       +AL+IF EMRK
Sbjct: 208 VFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRK 267

Query: 245 SRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDS 304
           + +  D +AL++++     + DL+ GK +H  V+  GL+ E  L  S+ ++Y+KCG +  
Sbjct: 268 TNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLISLTSLYAKCGHVMV 327

Query: 305 SRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASG 364
           +R  FNQ+   SL+ W A+ISGYV+NG A EA+  F ++ + K    DSIT+ S + A  
Sbjct: 328 ARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELF-RLMKSKNIRPDSITVTSSIAACA 386

Query: 365 ELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWN 424
           ++ +LE+   +      + F     V   LI +Y+KCG+VD+A  VF+ +   +DVV W+
Sbjct: 387 QIGSLELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIP-DKDVVVWS 445

Query: 425 TIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEE 484
            ++ GYG++G G  ++ L+H M + G  P+  T++ +L AC ++GL  +G  +F++M  +
Sbjct: 446 AMMVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVEEGWDLFHRM-RD 504

Query: 485 NKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
             ++P  +HY CVVDLL RAG L  A      +    G ++W ALLS C +H
Sbjct: 505 YGIEPRHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALLSACKIH 556



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/450 (26%), Positives = 228/450 (50%), Gaps = 25/450 (5%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           +KL++     G++  A  LFD+ P+ +V  W+ ++  YS +GF   +++ ++ M ++ + 
Sbjct: 111 AKLVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVACVS 170

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY------------ 114
           P+ F+   VL A + L  LE+ R +HG + + G ESD+F   GL   Y            
Sbjct: 171 PDGFSFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAV 230

Query: 115 --------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
                   +VS  +I++G+  N    +A+ +F+  R + + P+ + +++V+R    +   
Sbjct: 231 FGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDL 290

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
              + IHG  IK+GL  +  +  S+  +Y+    +  A   F ++E   +I W  M+  +
Sbjct: 291 EHGKSIHGCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGY 350

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
           V   YA +A+++FR M+   I  D++ + + I+  A +G L+  + +   + +   ++++
Sbjct: 351 VKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLELARWMDEYISMSEFRNDV 410

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            ++ S+I  Y+KCG +D +R VF++I +K +V W+A++ GY  +G  RE++  F  MRQ 
Sbjct: 411 IVNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQA 470

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGF-PRYRSVQNCLISSYSKCGNVD 405
              S + +T V +LTA      +E    L     + G  PR++    C++    + G++D
Sbjct: 471 GV-SPNDVTFVGLLTACKNSGLVEEGWDLFHRMRDYGIEPRHQHYA-CVVDLLGRAGHLD 528

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGH 435
            AY     M     V  W  ++    ++ H
Sbjct: 529 RAYNFVMNMPIEPGVSVWGALLSACKIHRH 558



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 170/346 (49%), Gaps = 23/346 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L++ Y K G+I  A  +F  + ++ +VSW+ +I GY+ NG   ++++ FS M 
Sbjct: 207 DVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMR 266

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
            + + P+   +V VL A   +++LE  +SIHG ++K GLE +                  
Sbjct: 267 KTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLISLTSLYAKCGHVM 326

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                F  ++NP L+  NA+++G++ N   ++A+ LF   +   + P+++T+ + I  C 
Sbjct: 327 VARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACA 386

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            +GS  L   +           DV VN S++D Y+    +D A  +F  +  KDV+ W+ 
Sbjct: 387 QIGSLELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSA 446

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           MM  +       +++ +F  MR++ +  + V  + L++     G ++ G  L  ++   G
Sbjct: 447 MMVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVEEGWDLFHRMRDYG 506

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRS-VFNQITEKSLVSWTAIISG 326
           ++   +    ++ +  + G LD + + V N   E  +  W A++S 
Sbjct: 507 IEPRHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALLSA 552


>gi|255541480|ref|XP_002511804.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548984|gb|EEF50473.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 607

 Score =  261 bits (667), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 154/527 (29%), Positives = 266/527 (50%), Gaps = 32/527 (6%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  D ++ + +++ Y  SG++ +A+ LF E P K+ ++WS +I G+    F  ++ + + 
Sbjct: 49  PERDEFSWNTMIAAYANSGRLTDAKQLFCEAPLKSSITWSSLISGFCKYEFDIEAFELYL 108

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPYL--- 115
            M   G  PN +T+  +L   +    L+    IHG  +K  L++++F    L + Y    
Sbjct: 109 QMQFEGQRPNHYTLGSILRLCSRTGFLQKGERIHGYAIKTRLDANVFVVTSLVDLYAKCE 168

Query: 116 ------------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
                              +  A++ G+ +N    +A+  F   R  G+  N  T  +++
Sbjct: 169 CISEAEYIFEMVADSKNHATWTAMLTGYSHNGDGFRAIKCFRDMRAEGVESNQFTFPSIL 228

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
             C A+        +HG  ++ G   ++ V ++++DMY+   DL++A ++   ME  DV+
Sbjct: 229 TACGAVSDHVFGVQVHGCIVRSGFGANIFVQSALVDMYAKCRDLNSANRVLENMEVNDVV 288

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           SW  M+   V   +  +AL +F EM    I  D     ++++  A + D++  K  H  +
Sbjct: 289 SWNSMIVGCVREGFEAEALSLFNEMHARDIKIDDYTYPSVLNSFASMKDIQSAKSAHCLI 348

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           +  G  +   ++N+++ MY+K G+LD + +VFNQ+ +K +VSWT++++GY  NG   +A+
Sbjct: 349 IKTGFGAYTLVNNALVDMYAKQGNLDYAFTVFNQMPDKDVVSWTSLVTGYSYNGSYEDAI 408

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
             F  MR       D I L S+L+A  EL   E   Q+H    ++G     S+ N L++ 
Sbjct: 409 KLFCDMRIAGV-CPDQIVLASVLSACAELTVTEFGQQVHATILKSGLCSSLSIDNSLVTM 467

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           Y+KCG ++ A  VF+ M  +RDV+SW  +I GY  NG G+ +L  Y +M  TG  PD  T
Sbjct: 468 YAKCGGIEDANYVFDSMQ-IRDVISWTALIVGYAQNGRGKDSLHFYDQMIATGTKPDFIT 526

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEEN-------KVKPSQEHYGCV 497
           ++ +L AC H GL  DG   F  M +E        K  PS   + CV
Sbjct: 527 FIGLLFACSHTGLVEDGRRYFESMDKEYGASHKWFKQLPSSHIFQCV 573



 Score =  177 bits (450), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 134/508 (26%), Positives = 239/508 (47%), Gaps = 58/508 (11%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S++ L++  KSG+I EA ++FD++PE++  SW+ +I  Y+ +G                 
Sbjct: 25  SNQQLNDLSKSGRIDEARHIFDKLPERDEFSWNTMIAAYANSG----------------- 67

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFIN 127
                T    L   A L++                             ++ +++++GF  
Sbjct: 68  ---RLTDAKQLFCEAPLKSS----------------------------ITWSSLISGFCK 96

Query: 128 NKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSV 187
            +   +A  L+   +  G  PN  T+ +++R C   G     E IHG  IK  L  +V V
Sbjct: 97  YEFDIEAFELYLQMQFEGQRPNHYTLGSILRLCSRTGFLQKGERIHGYAIKTRLDANVFV 156

Query: 188 NNSVLDMYSCLMDLDAAIQIFREM-ECKDVISWTRMMGLFVDFEYAGD---ALKIFREMR 243
             S++D+Y+    +  A  IF  + + K+  +WT M+     + + GD   A+K FR+MR
Sbjct: 157 VTSLVDLYAKCECISEAEYIFEMVADSKNHATWTAML---TGYSHNGDGFRAIKCFRDMR 213

Query: 244 KSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLD 303
              +  +     ++++    + D   G Q+H  +V  G  + + + ++++ MY+KC DL+
Sbjct: 214 AEGVESNQFTFPSILTACGAVSDHVFGVQVHGCIVRSGFGANIFVQSALVDMYAKCRDLN 273

Query: 304 SSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTAS 363
           S+  V   +    +VSW ++I G V+ G   EAL+ F +M       +D  T  S+L + 
Sbjct: 274 SANRVLENMEVNDVVSWNSMIVGCVREGFEAEALSLFNEMHARDI-KIDDYTYPSVLNSF 332

Query: 364 GELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSW 423
             +  ++     H +  + GF  Y  V N L+  Y+K GN+D A+ VF +M   +DVVSW
Sbjct: 333 ASMKDIQSAKSAHCLIIKTGFGAYTLVNNALVDMYAKQGNLDYAFTVFNQMP-DKDVVSW 391

Query: 424 NTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIE 483
            +++ GY  NG  E A+ L+  M   G  PD     S+L+AC    +T  G  + +  I 
Sbjct: 392 TSLVTGYSYNGSYEDAIKLFCDMRIAGVCPDQIVLASVLSACAELTVTEFGQQV-HATIL 450

Query: 484 ENKVKPSQEHYGCVVDLLARAGCLSDAS 511
           ++ +  S      +V + A+ G + DA+
Sbjct: 451 KSGLCSSLSIDNSLVTMYAKCGGIEDAN 478



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 137/303 (45%), Gaps = 22/303 (7%)

Query: 243 RKSRIICDTVAL-LNLISVNAILGDL-KRGKQLHAQVVLGGLQSELRLS-NSIIAMYSKC 299
           R S II        + I  N  L DL K G+   A+ +   L      S N++IA Y+  
Sbjct: 7   RHSYIIARQTGFSYSAIKSNQQLNDLSKSGRIDEARHIFDKLPERDEFSWNTMIAAYANS 66

Query: 300 GDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSI 359
           G L  ++ +F +   KS ++W+++ISG+ +     EA   +++M+ E     +  TL SI
Sbjct: 67  GRLTDAKQLFCEAPLKSSITWSSLISGFCKYEFDIEAFELYLQMQFEGQRP-NHYTLGSI 125

Query: 360 LTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRD 419
           L        L+   ++HG A +        V   L+  Y+KC  +  A  +FE +   ++
Sbjct: 126 LRLCSRTGFLQKGERIHGYAIKTRLDANVFVVTSLVDLYAKCECISEAEYIFEMVADSKN 185

Query: 420 VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA-----GLTNDG 474
             +W  ++ GY  NG G  A+  +  M   G   +  T+ SIL ACG       G+   G
Sbjct: 186 HATWTAMLTGYSHNGDGFRAIKCFRDMRAEGVESNQFTFPSILTACGAVSDHVFGVQVHG 245

Query: 475 LVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN---IWRALLS 531
            ++ +       V+ +      +VD+ A+   L+ A+    ++LE M  N    W +++ 
Sbjct: 246 CIVRSGFGANIFVQSA------LVDMYAKCRDLNSAN----RVLENMEVNDVVSWNSMIV 295

Query: 532 GCV 534
           GCV
Sbjct: 296 GCV 298



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 77/197 (39%), Gaps = 35/197 (17%)

Query: 369 LEICLQLHG--IAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTI 426
           +EI L  H   IA + GF       N  ++  SK G +D A  +F+++   RD  SWNT+
Sbjct: 1   MEIKLTRHSYIIARQTGFSYSAIKSNQQLNDLSKSGRIDEARHIFDKLP-ERDEFSWNTM 59

Query: 427 IYGYGVNGH-------------------------------GETALALYHKMTETGEVPDS 455
           I  Y  +G                                   A  LY +M   G+ P+ 
Sbjct: 60  IAAYANSGRLTDAKQLFCEAPLKSSITWSSLISGFCKYEFDIEAFELYLQMQFEGQRPNH 119

Query: 456 STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAG 515
            T  SIL  C   G    G  I    I + ++  +      +VDL A+  C+S+A  +  
Sbjct: 120 YTLGSILRLCSRTGFLQKGERIHGYAI-KTRLDANVFVVTSLVDLYAKCECISEAEYIFE 178

Query: 516 KLLEGMGPNIWRALLSG 532
            + +      W A+L+G
Sbjct: 179 MVADSKNHATWTAMLTG 195


>gi|297736478|emb|CBI25349.3| unnamed protein product [Vitis vinifera]
          Length = 1241

 Score =  261 bits (667), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 171/622 (27%), Positives = 301/622 (48%), Gaps = 58/622 (9%)

Query: 4    DPYNSSKLLSNYFKSGKIKEAENLFDEIPEK-NVVSWSIVIHGYSINGFHEKSMKAFSHM 62
            DPY  + L+  Y    +  EA +LF ++  + N+V+W+++I G+  NG  EKS++ +S  
Sbjct: 581  DPYLETALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLA 640

Query: 63   MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
                    S +  G   A +  + L+  R +H  ++K   + D                 
Sbjct: 641  KNENCKLVSASFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSV 700

Query: 106  -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                 +F+ + +  +   NA+++ FI N     A+ L+N  +      ++ T+ +++ GC
Sbjct: 701  EDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGC 760

Query: 161  VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
              +GS      +H   IK  +  +V++ +++L MY      + A  +F  M+ +DV++W 
Sbjct: 761  SVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVFYTMKERDVVAWG 820

Query: 221  RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
             M+  F       DAL +FR M K  +  D+  + ++IS    L +++ G  +H   +  
Sbjct: 821  SMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVISAGLGLENVELGHLIHGFAIKR 880

Query: 281  GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
            GL+S++ ++ S++ MYSK G  +S+  VF+ +  K+LV+W ++IS Y  NG    ++N  
Sbjct: 881  GLESDVFVACSLVDMYSKFGFAESAEMVFSSMPNKNLVAWNSMISCYSWNGLPEMSINLL 940

Query: 341  IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
             ++ Q     +DS+++ ++L A   +AAL     LH        P    V+N LI  Y K
Sbjct: 941  PQILQHGF-YLDSVSITTVLVAVSSVAALLKGKTLHAYQIRLQIPSDLQVENALIDMYVK 999

Query: 401  CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
            CG +  A ++FE M   R++V+WN++I GYG +G+ E A+ L+ +M  +   PD  T+L+
Sbjct: 1000 CGCLKYAQLIFENMP-RRNLVTWNSMIAGYGSHGNCEEAVRLFKEMKRSETAPDEVTFLA 1058

Query: 461  ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
            ++ +C H+G+  +GL +F  M  E  V+P  EHY  VVDLL RAG L DA      +   
Sbjct: 1059 LITSCSHSGMVEEGLNLFQLMRIEYGVEPRMEHYASVVDLLGRAGRLDDAYSFIRGMPID 1118

Query: 521  MGPNIWRALLSGCVLH---------------------------------VGRFQDAEALR 547
               ++W  LL  C  H                                 V  +  A  LR
Sbjct: 1119 ADRSVWLCLLFACRAHRNMELGELVADNLLKMEPARGSNYVPLLNLYGEVEMWDRAANLR 1178

Query: 548  SGSQKKGIIKIPGISFLNSTSR 569
            +  + +G+ K PG S++   +R
Sbjct: 1179 ASMKGRGLKKSPGCSWIEVKNR 1200



 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 133/535 (24%), Positives = 254/535 (47%), Gaps = 31/535 (5%)

Query: 4    DPYNSSKLLSNYFKSGKIKEAENLFDEIPE-----KNVVSWSIVIHGYSINGFHEKSMKA 58
            DPY ++ L++ Y K G +  A  +FD++ E      ++  W+ VI GY   G  E+ +  
Sbjct: 475  DPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFEEGLAQ 534

Query: 59   FSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------- 105
            F  M   G+ P+ +++  VL     L      R IHG +++   E D             
Sbjct: 535  FCRMQELGIRPDGYSLSIVLGICNRLSWYMAGRQIHGYIIRNMFEGDPYLETALIGMYSS 594

Query: 106  ---------LFEGLKN-PYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLT 155
                     LF  L+N   +V+ N ++ GF+ N ++++++ L++  +       + +   
Sbjct: 595  CSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASFTG 654

Query: 156  VIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKD 215
                C           +H   IK+    D  V  S+L MY+    ++ A ++F ++  K+
Sbjct: 655  AFTACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKE 714

Query: 216  VISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
            V     M+  F+    A DAL ++ +M+      D+  + +L+S  +++G    G+ +HA
Sbjct: 715  VELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHA 774

Query: 276  QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
            +V+   +QS + + ++++ MY KCG  + + SVF  + E+ +V+W ++I+G+ QN   ++
Sbjct: 775  EVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKD 834

Query: 336  ALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLI 395
            AL+ F  M +E   + DS  + S+++A   L  +E+   +HG A + G      V   L+
Sbjct: 835  ALDLFRAMEKEGVKA-DSDVMTSVISAGLGLENVELGHLIHGFAIKRGLESDVFVACSLV 893

Query: 396  SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
              YSK G  + A +VF  M   +++V+WN++I  Y  NG  E ++ L  ++ + G   DS
Sbjct: 894  DMYSKFGFAESAEMVFSSMPN-KNLVAWNSMISCYSWNGLPEMSINLLPQILQHGFYLDS 952

Query: 456  STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
             +  ++L A         G  +    I   ++    +    ++D+  + GCL  A
Sbjct: 953  VSITTVLVAVSSVAALLKGKTLHAYQIRL-QIPSDLQVENALIDMYVKCGCLKYA 1006



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 107/444 (24%), Positives = 204/444 (45%), Gaps = 30/444 (6%)

Query: 49  NGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--- 105
            G + ++++  S    S L    FT   +L   A L NL   R+IH  +V  GL+SD   
Sbjct: 419 QGKYSQALELHSKTPHSALTTAKFTFPSLLKTCASLSNLYHGRTIHASIVTMGLQSDPYI 478

Query: 106 -------------------LFEGLKN-----PYLVSCNAIVAGFINNKLFQQAVLLFNFF 141
                              +F+ +       P +   N ++ G+     F++ +  F   
Sbjct: 479 ATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFEEGLAQFCRM 538

Query: 142 RGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDL 201
           +  G+ P+  ++  V+  C  L        IHG  I+     D  +  +++ MYS     
Sbjct: 539 QELGIRPDGYSLSIVLGICNRLSWYMAGRQIHGYIIRNMFEGDPYLETALIGMYSSCSRP 598

Query: 202 DAAIQIFREMECK-DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISV 260
             A  +F ++E + ++++W  M+G FV+      +L+++   +       + +     + 
Sbjct: 599 MEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASFTGAFTA 658

Query: 261 NAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSW 320
            +    L  G+Q+H  V+    Q +  +  S++ MY+K G ++ ++ VF+Q+ +K +   
Sbjct: 659 CSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELR 718

Query: 321 TAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAF 380
            A+IS ++ NG A +AL  + KM+  +T  VDS T+ S+L+    + + +    +H    
Sbjct: 719 NAMISAFIGNGRAYDALGLYNKMKAGET-PVDSFTISSLLSGCSVVGSYDFGRTVHAEVI 777

Query: 381 EAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETAL 440
           +       ++Q+ L++ Y KCG+ + A  VF  M   RDVV+W ++I G+  N   + AL
Sbjct: 778 KRSMQSNVAIQSALLTMYYKCGSTEDADSVFYTMK-ERDVVAWGSMIAGFCQNRRFKDAL 836

Query: 441 ALYHKMTETGEVPDSSTYLSILNA 464
            L+  M + G   DS    S+++A
Sbjct: 837 DLFRAMEKEGVKADSDVMTSVISA 860



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 104/441 (23%), Positives = 203/441 (46%), Gaps = 13/441 (2%)

Query: 122 VAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGL 181
           +   +    + QA+ L +    S L     T  ++++ C +L +      IH   + +GL
Sbjct: 413 IKALVQQGKYSQALELHSKTPHSALTTAKFTFPSLLKTCASLSNLYHGRTIHASIVTMGL 472

Query: 182 ILDVSVNNSVLDMYSCLMDLDAAIQIFREME-----CKDVISWTRMMGLFVDFEYAGDAL 236
             D  +  S+++MY     L +A+Q+F +M        D+  W  ++  +  + +  + L
Sbjct: 473 QSDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFEEGL 532

Query: 237 KIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMY 296
             F  M++  I  D  +L  ++ +   L     G+Q+H  ++    + +  L  ++I MY
Sbjct: 533 AQFCRMQELGIRPDGYSLSIVLGICNRLSWYMAGRQIHGYIIRNMFEGDPYLETALIGMY 592

Query: 297 SKCGDLDSSRSVFNQITEKS-LVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSIT 355
           S C     + S+F ++  +S +V+W  +I G+V+NG   ++L  +   + E    V S +
Sbjct: 593 SSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLV-SAS 651

Query: 356 LVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMG 415
                TA      L+   Q+H    +  F     V   L++ Y+K G+V+ A  VF+++ 
Sbjct: 652 FTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQV- 710

Query: 416 FLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNACGHAGLTNDG 474
             ++V   N +I  +  NG    AL LY+KM + GE P DS T  S+L+ C   G  + G
Sbjct: 711 LDKEVELRNAMISAFIGNGRAYDALGLYNKM-KAGETPVDSFTISSLLSGCSVVGSYDFG 769

Query: 475 LVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCV 534
             +  ++I+ + ++ +      ++ +  + G   DA  +   + E      W ++++G  
Sbjct: 770 RTVHAEVIKRS-MQSNVAIQSALLTMYYKCGSTEDADSVFYTMKE-RDVVAWGSMIAG-F 826

Query: 535 LHVGRFQDAEALRSGSQKKGI 555
               RF+DA  L    +K+G+
Sbjct: 827 CQNRRFKDALDLFRAMEKEGV 847


>gi|357474955|ref|XP_003607763.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355508818|gb|AES89960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 871

 Score =  261 bits (667), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 180/618 (29%), Positives = 309/618 (50%), Gaps = 65/618 (10%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + L+S Y   G ++ A  LF  +P     S+ ++I  + +N  H   +  ++    +   
Sbjct: 72  TTLISLYASFGFLRHARTLFHRLPSPTHHSFKLIIRWHFLNDVHSHVVSFYNLARTTLGS 131

Query: 69  PNSFTMVGVLV-AAAGLQNLELARSIHGLMVK------FGLES---------------DL 106
            N   +  +L+  A+ L+++ L   +H  ++K      F L S                +
Sbjct: 132 FNDLVVFSILLKTASQLRDIVLTTKLHCNILKSNAADSFVLTSLVDAYSKCGKLRDARKV 191

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           F+ + +  +VS  +++  ++ N+  ++ ++LFN  R   L  N  T+ +++  C  LG  
Sbjct: 192 FDEIPDRSVVSWTSMIVAYVQNECAEEGLMLFNRMREGFLDGNVFTVGSLVTACTKLGCL 251

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK------DVISWT 220
              + +HG  IK G+ ++  +  S+L+MY    D+  A  +F E          D++ WT
Sbjct: 252 HQGKWVHGYVIKNGIEINSYLATSLLNMYVKCGDIGDARSVFDEFSVSTCGGGDDLVFWT 311

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+  +    Y   AL++F + +  RI+ ++V L +L+S  A L ++  GK LH  VV  
Sbjct: 312 AMIVGYTQRGYPQAALELFTDKKWYRILPNSVTLASLLSACAQLENIVMGKLLHVLVVKY 371

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           GL  +  L NS++ MY+KCG +  +  VF    +K +VSW ++ISGY Q+G A EAL+ F
Sbjct: 372 GLD-DTSLRNSLVDMYAKCGLIPDAHYVFATTVDKDVVSWNSVISGYAQSGSAYEALDLF 430

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYR-SVQNCLISSYS 399
            +MR E     D++T+V +L+A   + A +I L LHG A + G       V   L++ Y+
Sbjct: 431 NRMRMESFLP-DAVTVVGVLSACASVGAHQIGLSLHGFALKYGLVSSSIYVGTALLNFYA 489

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           KCG+   A +VF+ MG  ++ V+W  +I G G+ G G  +LAL+  M +   VP+   + 
Sbjct: 490 KCGDATSARMVFDGMG-EKNAVTWAAMIGGCGMQGDGVGSLALFRDMLKEELVPNEVVFT 548

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519
           ++L AC H+G+  +GL+IF+ M +E    PS +HY C+VDLLARAG L +A     K+  
Sbjct: 549 TLLAACSHSGMVEEGLMIFDFMCKELNFVPSMKHYACMVDLLARAGNLQEALDFIDKMPV 608

Query: 520 GMGPNIWRALLSGCVLHV---------------------------------GRFQDAEAL 546
             G  ++ A L GC LH                                  GR+   + +
Sbjct: 609 QPGVGVFGAFLHGCGLHSNFDFGEVAIRRMLELHPDQACYYVLISNLYASDGRWGMVKEV 668

Query: 547 RSGSQKKGIIKIPGISFL 564
           R   +++G+ K+PG+S +
Sbjct: 669 REMIKQRGLNKVPGVSLV 686



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 130/490 (26%), Positives = 231/490 (47%), Gaps = 34/490 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L+  Y K GK+++A  +FDEIP+++VVSW+ +I  Y  N   E+ +  F+ M 
Sbjct: 168 DSFVLTSLVDAYSKCGKLRDARKVFDEIPDRSVVSWTSMIVAYVQNECAEEGLMLFNRMR 227

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE--SDLFEGLKNPY------- 114
              L  N FT+  ++ A   L  L   + +HG ++K G+E  S L   L N Y       
Sbjct: 228 EGFLDGNVFTVGSLVTACTKLGCLHQGKWVHGYVIKNGIEINSYLATSLLNMYVKCGDIG 287

Query: 115 -------------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLT 155
                              LV   A++ G+      Q A+ LF   +   ++PN+VT+ +
Sbjct: 288 DARSVFDEFSVSTCGGGDDLVFWTAMIVGYTQRGYPQAALELFTDKKWYRILPNSVTLAS 347

Query: 156 VIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKD 215
           ++  C  L +  + +L+H L +K GL  D S+ NS++DMY+    +  A  +F     KD
Sbjct: 348 LLSACAQLENIVMGKLLHVLVVKYGLD-DTSLRNSLVDMYAKCGLIPDAHYVFATTVDKD 406

Query: 216 VISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
           V+SW  ++  +     A +AL +F  MR    + D V ++ ++S  A +G  + G  LH 
Sbjct: 407 VVSWNSVISGYAQSGSAYEALDLFNRMRMESFLPDAVTVVGVLSACASVGAHQIGLSLHG 466

Query: 276 QVVLGGL-QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
             +  GL  S + +  +++  Y+KCGD  S+R VF+ + EK+ V+W A+I G    G   
Sbjct: 467 FALKYGLVSSSIYVGTALLNFYAKCGDATSARMVFDGMGEKNAVTWAAMIGGCGMQGDGV 526

Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHG-IAFEAGFPRYRSVQNC 393
            +L  F  M +E+    + +   ++L A      +E  L +   +  E  F        C
Sbjct: 527 GSLALFRDMLKEELVP-NEVVFTTLLAACSHSGMVEEGLMIFDFMCKELNFVPSMKHYAC 585

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           ++   ++ GN+  A    ++M     V  +   ++G G++ + +       +M E    P
Sbjct: 586 MVDLLARAGNLQEALDFIDKMPVQPGVGVFGAFLHGCGLHSNFDFGEVAIRRMLELH--P 643

Query: 454 DSSTYLSILN 463
           D + Y  +++
Sbjct: 644 DQACYYVLIS 653



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 155/299 (51%), Gaps = 34/299 (11%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEK------NVVSWSIVIHGYSINGFHEKSM 56
           I+ Y ++ LL+ Y K G I +A ++FDE          ++V W+ +I GY+  G+ + ++
Sbjct: 268 INSYLATSLLNMYVKCGDIGDARSVFDEFSVSTCGGGDDLVFWTAMIVGYTQRGYPQAAL 327

Query: 57  KAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL-ESDLFEGLKNPY- 114
           + F+      +LPNS T+  +L A A L+N+ + + +H L+VK+GL ++ L   L + Y 
Sbjct: 328 ELFTDKKWYRILPNSVTLASLLSACAQLENIVMGKLLHVLVVKYGLDDTSLRNSLVDMYA 387

Query: 115 -------------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLT 155
                              +VS N++++G+  +    +A+ LFN  R    +P+AVT++ 
Sbjct: 388 KCGLIPDAHYVFATTVDKDVVSWNSVISGYAQSGSAYEALDLFNRMRMESFLPDAVTVVG 447

Query: 156 VIRGCVALGSRALCELIHGLTIKLGLI-LDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
           V+  C ++G+  +   +HG  +K GL+   + V  ++L+ Y+   D  +A  +F  M  K
Sbjct: 448 VLSACASVGAHQIGLSLHGFALKYGLVSSSIYVGTALLNFYAKCGDATSARMVFDGMGEK 507

Query: 215 DVISWTRMMGLFVDFEYAGD---ALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG 270
           + ++W  M+G        GD   +L +FR+M K  ++ + V    L++  +  G ++ G
Sbjct: 508 NAVTWAAMIG---GCGMQGDGVGSLALFRDMLKEELVPNEVVFTTLLAACSHSGMVEEG 563


>gi|224112156|ref|XP_002316102.1| predicted protein [Populus trichocarpa]
 gi|222865142|gb|EEF02273.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  261 bits (666), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 166/559 (29%), Positives = 294/559 (52%), Gaps = 26/559 (4%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+KL+S Y   G++  A  +FD IP  + +SW ++I  Y +N      +  ++ M +   
Sbjct: 40  STKLVSLYGSFGRLDLARLVFDTIPHPDFLSWKVIIRWYFLNSEFRDIVGFYNRMRVCLK 99

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG-LESDLFEGLKNPY------------ 114
             ++     VL A +  +N +  R +H  +VKFG  +S +F GL + Y            
Sbjct: 100 ECDNVVFSHVLKACSESRNFDEGRKVHCQIVKFGNPDSFVFTGLVDMYAKCGEIECSRSV 159

Query: 115 --------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
                   + S ++++AG++ N L Q  ++LFN  R   +  N +T+  ++  C  LG+ 
Sbjct: 160 FDENLDRNVFSWSSMIAGYVQNNLAQDGLVLFNRMREELIEANQITLGILVHACKKLGAL 219

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
              + +HG  IK G+ L   +  ++LD+Y+    +  A  +F E+   D++SWT M+  +
Sbjct: 220 HQGKWLHGYLIKCGIELGSYLVTALLDLYAKCGVVRDARSVFDELHGIDIVSWTAMIVGY 279

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
                  +ALK+F +  +  ++ + V + ++ S  + L +L  G+ +H   +  G +  +
Sbjct: 280 TQNGCPEEALKLFLQKEQVAVLPNDVTIASVFSSCSQLLNLNLGRSIHGLSIKLGSRDPI 339

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            ++NS++  Y+KC     +R VF  I+++ +V+W +IIS + QNG A EAL  F +MR  
Sbjct: 340 -VTNSLVDFYAKCQMNRDARYVFETISDRDVVAWNSIISAFSQNGSAYEALELFHQMRMG 398

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYR-SVQNCLISSYSKCGNVD 405
                D++TLVS+L+A   L AL++    H  A + G       V   L++ Y+KCG+ +
Sbjct: 399 SVLP-DAVTLVSVLSACASLNALQVGSSFHAYAVKRGLLSSNVYVGTALLTFYAKCGDAE 457

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            A ++F+ M   +  V+W+ +I GYG+ G+G  +L+++  M +    P+   + SIL+AC
Sbjct: 458 SARVIFDGMD-QKSTVTWSAMISGYGIQGNGRGSLSIFGDMLKAELKPNEEIFTSILSAC 516

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI 525
            H G+  +G  +F  + ++  + PS +HY C+VDLLARAG L +A     K+      ++
Sbjct: 517 SHTGMIGEGWRLFTMICQDYNLVPSTKHYTCMVDLLARAGRLKEALDFIQKMPVQPDVSL 576

Query: 526 WRALLSGCVLHVGRFQDAE 544
           + A L GC LH  RF   E
Sbjct: 577 FGAFLHGCGLH-SRFDLGE 594



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 134/466 (28%), Positives = 230/466 (49%), Gaps = 33/466 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L+  Y K G+I+ + ++FDE  ++NV SWS +I GY  N   +  +  F+ M 
Sbjct: 136 DSFVFTGLVDMYAKCGEIECSRSVFDENLDRNVFSWSSMIAGYVQNNLAQDGLVLFNRMR 195

Query: 64  LSGLLPNSFTMVGVLV-AAAGLQNLELARSIHGLMVKFGLE------------------- 103
              +  N  T+ G+LV A   L  L   + +HG ++K G+E                   
Sbjct: 196 EELIEANQITL-GILVHACKKLGALHQGKWLHGYLIKCGIELGSYLVTALLDLYAKCGVV 254

Query: 104 ---SDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +F+ L    +VS  A++ G+  N   ++A+ LF       ++PN VT+ +V   C
Sbjct: 255 RDARSVFDELHGIDIVSWTAMIVGYTQNGCPEEALKLFLQKEQVAVLPNDVTIASVFSSC 314

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYS-CLMDLDAAIQIFREMECKDVISW 219
             L +  L   IHGL+IKLG   D  V NS++D Y+ C M+ DA   +F  +  +DV++W
Sbjct: 315 SQLLNLNLGRSIHGLSIKLG-SRDPIVTNSLVDFYAKCQMNRDARY-VFETISDRDVVAW 372

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
             ++  F     A +AL++F +MR   ++ D V L++++S  A L  L+ G   HA  V 
Sbjct: 373 NSIISAFSQNGSAYEALELFHQMRMGSVLPDAVTLVSVLSACASLNALQVGSSFHAYAVK 432

Query: 280 GG-LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
            G L S + +  +++  Y+KCGD +S+R +F+ + +KS V+W+A+ISGY   G  R +L+
Sbjct: 433 RGLLSSNVYVGTALLTFYAKCGDAESARVIFDGMDQKSTVTWSAMISGYGIQGNGRGSLS 492

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHG-IAFEAGFPRYRSVQNCLISS 397
            F  M + +    + I   SIL+A      +    +L   I  +           C++  
Sbjct: 493 IFGDMLKAELKPNEEI-FTSILSACSHTGMIGEGWRLFTMICQDYNLVPSTKHYTCMVDL 551

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGH---GETAL 440
            ++ G +  A    ++M    DV  +   ++G G++     GE A+
Sbjct: 552 LARAGRLKEALDFIQKMPVQPDVSLFGAFLHGCGLHSRFDLGELAI 597



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 88/297 (29%), Positives = 158/297 (53%), Gaps = 5/297 (1%)

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM-GLFVDFE 230
           +H   +  GL  D+S +  ++ +Y     LD A  +F  +   D +SW  ++   F++ E
Sbjct: 24  MHAYLVVQGLTRDLSCSTKLVSLYGSFGRLDLARLVFDTIPHPDFLSWKVIIRWYFLNSE 83

Query: 231 YAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSN 290
           +  D +  +  MR     CD V   +++   +   +   G+++H Q+V  G       + 
Sbjct: 84  FR-DIVGFYNRMRVCLKECDNVVFSHVLKACSESRNFDEGRKVHCQIVKFGNPDSFVFTG 142

Query: 291 SIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDS 350
            ++ MY+KCG+++ SRSVF++  ++++ SW+++I+GYVQN  A++ L  F +MR+E  ++
Sbjct: 143 -LVDMYAKCGEIECSRSVFDENLDRNVFSWSSMIAGYVQNNLAQDGLVLFNRMREELIEA 201

Query: 351 VDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIV 410
            + ITL  ++ A  +L AL     LHG   + G      +   L+  Y+KCG V  A  V
Sbjct: 202 -NQITLGILVHACKKLGALHQGKWLHGYLIKCGIELGSYLVTALLDLYAKCGVVRDARSV 260

Query: 411 FEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
           F+E+  + D+VSW  +I GY  NG  E AL L+ +  +   +P+  T  S+ ++C  
Sbjct: 261 FDELHGI-DIVSWTAMIVGYTQNGCPEEALKLFLQKEQVAVLPNDVTIASVFSSCSQ 316



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 139/291 (47%), Gaps = 14/291 (4%)

Query: 272 QLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNG 331
           ++HA +V+ GL  +L  S  ++++Y   G LD +R VF+ I     +SW  II  Y  N 
Sbjct: 23  EMHAYLVVQGLTRDLSCSTKLVSLYGSFGRLDLARLVFDTIPHPDFLSWKVIIRWYFLNS 82

Query: 332 CAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ 391
             R+ +  + +MR    +  D++    +L A  E    +   ++H    + G P    V 
Sbjct: 83  EFRDIVGFYNRMRVCLKE-CDNVVFSHVLKACSESRNFDEGRKVHCQIVKFGNPD-SFVF 140

Query: 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE 451
             L+  Y+KCG ++ +  VF+E    R+V SW+++I GY  N   +  L L+++M E   
Sbjct: 141 TGLVDMYAKCGEIECSRSVFDE-NLDRNVFSWSSMIAGYVQNNLAQDGLVLFNRMREELI 199

Query: 452 VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDAS 511
             +  T   +++AC   G  + G  +   +I+   ++        ++DL A+ G + DA 
Sbjct: 200 EANQITLGILVHACKKLGALHQGKWLHGYLIKCG-IELGSYLVTALLDLYAKCGVVRDAR 258

Query: 512 GLAGKLLEGMGPNIWRALLSGCVLHVGRFQDA---EALRSGSQKKGIIKIP 559
            +  + L G+    W A++      VG  Q+    EAL+   QK+ +  +P
Sbjct: 259 SVFDE-LHGIDIVSWTAMI------VGYTQNGCPEEALKLFLQKEQVAVLP 302



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 70/307 (22%), Positives = 136/307 (44%), Gaps = 41/307 (13%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           DP  ++ L+  Y K    ++A  +F+ I +++VV+W+ +I  +S NG   ++++ F  M 
Sbjct: 337 DPIVTNSLVDFYAKCQMNRDARYVFETISDRDVVAWNSIISAFSQNGSAYEALELFHQMR 396

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
           +  +LP++ T+V VL A A L  L++  S H   VK GL S                   
Sbjct: 397 MGSVLPDAVTLVSVLSACASLNALQVGSSFHAYAVKRGLLSSNVYVGTALLTFYAKCGDA 456

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +F+G+     V+ +A+++G+      + ++ +F     + L PN     +++  C
Sbjct: 457 ESARVIFDGMDQKSTVTWSAMISGYGIQGNGRGSLSIFGDMLKAELKPNEEIFTSILSAC 516

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDA-------AIQIFREMEC 213
              G      +  G  +   +  D ++  S    Y+C++DL A       A+   ++M  
Sbjct: 517 SHTGM-----IGEGWRLFTMICQDYNLVPST-KHYTCMVDLLARAGRLKEALDFIQKMPV 570

Query: 214 KDVIS----WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKR 269
           +  +S    +    GL   F+    A+K   E+      C  V + NL + +A    +K+
Sbjct: 571 QPDVSLFGAFLHGCGLHSRFDLGELAIKRMLELHPGD-ACYYVLMCNLYASDARWSKVKQ 629

Query: 270 GKQLHAQ 276
            ++L  Q
Sbjct: 630 VRELMKQ 636



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 3/133 (2%)

Query: 373 LQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGV 432
           +++H      G  R  S    L+S Y   G +DLA +VF+ +    D +SW  II  Y +
Sbjct: 22  MEMHAYLVVQGLTRDLSCSTKLVSLYGSFGRLDLARLVFDTIPH-PDFLSWKVIIRWYFL 80

Query: 433 NGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQE 492
           N      +  Y++M    +  D+  +  +L AC  +   ++G  +  Q+++     P   
Sbjct: 81  NSEFRDIVGFYNRMRVCLKECDNVVFSHVLKACSESRNFDEGRKVHCQIVKFG--NPDSF 138

Query: 493 HYGCVVDLLARAG 505
            +  +VD+ A+ G
Sbjct: 139 VFTGLVDMYAKCG 151


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  261 bits (666), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 183/622 (29%), Positives = 305/622 (49%), Gaps = 72/622 (11%)

Query: 14  NYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKS--MKAFSHMMLSGLLPNS 71
           ++  SG +  A +LFD+IP  +V +++ +I  YS +     +  +  +  M+   + PN+
Sbjct: 66  DHIASGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNN 125

Query: 72  FTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY--------------- 114
           +T    L A + L +    R+IH   +  GL++DLF    L + Y               
Sbjct: 126 YTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFAT 185

Query: 115 -----LVSCNAIVAGFINNKLFQQAV--LLFNFFRGSGLVPNAVTMLTVIRGCVALGSRA 167
                LV+ NA++AG+ ++ ++  AV  LL    +   L PNA T++ ++      G+ A
Sbjct: 186 MPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALA 245

Query: 168 LCELIHGLTIKLGLILD----------VSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
               +H   I+  L  +          V +  ++LDMY+    L  A ++F  M  ++ +
Sbjct: 246 QGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEV 305

Query: 218 SWTRMMGLFVDFEYAGDALKIFREM-RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQ 276
           +W+ ++G FV       A  +F+ M  +        ++ + +   A L  L+ G+QLHA 
Sbjct: 306 TWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHAL 365

Query: 277 VVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
           +   G+ ++L   NS+++MY+K G +D + ++F+++  K  VS++A++SGYVQNG A EA
Sbjct: 366 LAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEA 425

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
              F KM+    +  D+ T+VS++ A   LAAL+     HG     G     S+ N LI 
Sbjct: 426 FLVFKKMQACNVEP-DAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALID 484

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
            Y+KCG +DL+  VF  M   RD+VSWNT+I GYG++G G+ A AL+ +M   G  PD  
Sbjct: 485 MYAKCGRIDLSRQVFNMMPS-RDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGV 543

Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK 516
           T++ +L+AC H+GL  +G   F+ M     + P  EHY C+VDLL+R G L +A      
Sbjct: 544 TFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQS 603

Query: 517 LLEGMGPNIWRALLSGCVLH---------------------------------VGRFQDA 543
           +       +W ALL  C ++                                  GRF +A
Sbjct: 604 MPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEA 663

Query: 544 EALRSGSQKKGIIKIPGISFLN 565
             +R   + +G  K PG S++ 
Sbjct: 664 AEVRIIQKVQGFKKSPGCSWIE 685



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/362 (25%), Positives = 163/362 (45%), Gaps = 41/362 (11%)

Query: 2   CIDPYNSSK------------LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSIN 49
           C+ P  +SK            LL  Y K G +  A  +FD +P +N V+WS +I G+ + 
Sbjct: 258 CLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLC 317

Query: 50  GFHEKSMKAFSHMMLSGLLPNSFTMVG-VLVAAAGLQNLELARSIHGLMVKFGLESD--- 105
               ++   F  M+  GL   S T +   L A A L +L +   +H L+ K G+ +D   
Sbjct: 318 SRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTA 377

Query: 106 -------------------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGL 146
                              LF+ +     VS +A+V+G++ N   ++A L+F   +   +
Sbjct: 378 GNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNV 437

Query: 147 VPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQ 206
            P+A TM+++I  C  L +       HG  I  GL  + S+ N+++DMY+    +D + Q
Sbjct: 438 EPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQ 497

Query: 207 IFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGD 266
           +F  M  +D++SW  M+  +       +A  +F EM       D V  + L+S  +  G 
Sbjct: 498 VFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGL 557

Query: 267 LKRGKQLHAQVVLG---GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVS-WTA 322
           +  GK  H   V+G   GL   +     ++ + S+ G LD +      +  ++ V  W A
Sbjct: 558 VIEGK--HWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVA 615

Query: 323 II 324
           ++
Sbjct: 616 LL 617



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 111/251 (44%), Gaps = 46/251 (18%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + LLS Y K+G I +A  LFDE+  K+ VS+S ++ GY  NG  E++   F  M    + 
Sbjct: 379 NSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVE 438

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------L 106
           P++ TMV ++ A + L  L+  R  HG ++  GL S+                      +
Sbjct: 439 PDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQV 498

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC-----V 161
           F  + +  +VS N ++AG+  + L ++A  LF      G  P+ VT + ++  C     V
Sbjct: 499 FNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLV 558

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMD-------LDAAIQIFREMECK 214
             G      + HG  +              ++ Y C++D       LD A +  + M  +
Sbjct: 559 IEGKHWFHVMGHGYGL-----------TPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLR 607

Query: 215 -DVISWTRMMG 224
            DV  W  ++G
Sbjct: 608 ADVRVWVALLG 618


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  261 bits (666), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 158/530 (29%), Positives = 273/530 (51%), Gaps = 57/530 (10%)

Query: 10  KLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM---LSG 66
           KL+S Y   G +KE   +FD + +KNV  W+ ++  Y+  G  ++S+  F  M+   + G
Sbjct: 139 KLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEG 198

Query: 67  LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFI 126
             P S                                S+LF+ L +  ++S N++++G++
Sbjct: 199 KRPES-------------------------------ASELFDKLCDRDVISWNSMISGYV 227

Query: 127 NNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVS 186
           +N L ++ + ++      G+  +  T+++V+ GC   G+ +L + +H L IK      ++
Sbjct: 228 SNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRIN 287

Query: 187 VNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSR 246
            +N++LDMYS   DLD A+++F +M  ++V+SWT M+  +    ++  A+ + ++M K  
Sbjct: 288 FSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEG 347

Query: 247 IICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSR 306
           +  D VA+ +++   A  G L  GK +H  +    + S L + N+++ MY+KCG ++ + 
Sbjct: 348 VKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGAN 407

Query: 307 SVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGEL 366
           SVF+ +  K ++SW  ++                           DS T+  IL A   L
Sbjct: 408 SVFSTMVVKDIISWNTMVGEL----------------------KPDSRTMACILPACASL 445

Query: 367 AALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTI 426
           +ALE   ++HG     G+   R V N L+  Y KCG + LA ++F +M   +D+VSW  +
Sbjct: 446 SALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLF-DMIPSKDLVSWTVM 504

Query: 427 IYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENK 486
           I GYG++G+G  A+A +++M + G  PD  +++SIL AC H+GL   G   F  M  +  
Sbjct: 505 IAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFN 564

Query: 487 VKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
           ++P  EHY C+VDLL+R G LS A      L       IW ALL GC ++
Sbjct: 565 IEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIY 614



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 120/472 (25%), Positives = 215/472 (45%), Gaps = 56/472 (11%)

Query: 19  GKIKE-AENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGV 77
           GK  E A  LFD++ +++V+SW+ +I GY  NG  E+ +  +  MM  G+  +  T++ V
Sbjct: 198 GKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISV 257

Query: 78  LVAAAGLQNLELARSIHGLMVKFGLESDL----------------------FEGLKNPYL 115
           LV  A    L L +++H L +K   E  +                      FE +    +
Sbjct: 258 LVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNV 317

Query: 116 VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGL 175
           VS  +++AG+  +     A++L       G+  + V + +++  C   GS    + +H  
Sbjct: 318 VSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDY 377

Query: 176 TIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDA 235
                +  ++ V N+++DMY+    ++ A  +F  M  KD+ISW  M+G           
Sbjct: 378 IKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVG----------- 426

Query: 236 LKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAM 295
                E++      D+  +  ++   A L  L+RGK++H  ++  G  S+  ++N+++ +
Sbjct: 427 -----ELKP-----DSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDL 476

Query: 296 YSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSIT 355
           Y KCG L  +R +F+ I  K LVSWT +I+GY  +G   EA+  F +MR    +  D ++
Sbjct: 477 YVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEP-DEVS 535

Query: 356 LVSILTASGELAALEICLQLHGIA-----FEAGFPRYRSVQNCLISSYSKCGNVDLAYIV 410
            +SIL A      LE   +   I       E     Y     C++   S+ GN+  AY  
Sbjct: 536 FISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYA----CMVDLLSRTGNLSKAYKF 591

Query: 411 FEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
            E +    D   W  ++ G  +    E A  +  ++ E    P+++ Y  +L
Sbjct: 592 IETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELE--PENTGYYVLL 641



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 168/341 (49%), Gaps = 35/341 (10%)

Query: 198 LMDLDAAIQIF-----REMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTV 252
           L DL+ A+++       E+E K   ++  ++ L    +   D  K+   ++ + +  D  
Sbjct: 79  LGDLENAMELVCMCQKSELETK---TYGSVLQLCAGLKSLTDGKKVHSIIKSNSVGVDEA 135

Query: 253 ALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDL---------- 302
             L L+S  A  GDLK G+++   +     +  + L N +++ Y+K GD           
Sbjct: 136 LGLKLVSFYATCGDLKEGRRVFDTME----KKNVYLWNFMVSEYAKIGDFKESICLFKIM 191

Query: 303 ----------DSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVD 352
                     +S+  +F+++ ++ ++SW ++ISGYV NG     L  + +M     D VD
Sbjct: 192 VEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGID-VD 250

Query: 353 SITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFE 412
             T++S+L        L +   +H +A ++ F R  +  N L+  YSKCG++D A  VFE
Sbjct: 251 LATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFE 310

Query: 413 EMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTN 472
           +MG  R+VVSW ++I GY  +G  + A+ L  +M + G   D     SIL+AC  +G  +
Sbjct: 311 KMG-ERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLD 369

Query: 473 DGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL 513
           +G  + +  I+ N +  +      ++D+ A+ G +  A+ +
Sbjct: 370 NGKDV-HDYIKANNMASNLFVCNALMDMYAKCGSMEGANSV 409



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 134/265 (50%), Gaps = 3/265 (1%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ LL  Y K G +  A  +F+++ E+NVVSW+ +I GY+ +G+ + ++     M   G+
Sbjct: 289 SNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGV 348

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPYLVSCNAIVAGF 125
             +   +  +L A A   +L+  + +H  +    + S+LF    L + Y    +   A  
Sbjct: 349 KLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANS 408

Query: 126 INNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDV 185
           + + +  + ++ +N   G  L P++ TM  ++  C +L +    + IHG  ++ G   D 
Sbjct: 409 VFSTMVVKDIISWNTMVGE-LKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDR 467

Query: 186 SVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKS 245
            V N+++D+Y     L  A  +F  +  KD++SWT M+  +    Y  +A+  F EMR +
Sbjct: 468 HVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDA 527

Query: 246 RIICDTVALLNLISVNAILGDLKRG 270
            I  D V+ ++++   +  G L++G
Sbjct: 528 GIEPDEVSFISILYACSHSGLLEQG 552



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 49/79 (62%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + ++ L+  Y K G +  A  LFD IP K++VSW+++I GY ++G+  +++  F+ M 
Sbjct: 466 DRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMR 525

Query: 64  LSGLLPNSFTMVGVLVAAA 82
            +G+ P+  + + +L A +
Sbjct: 526 DAGIEPDEVSFISILYACS 544


>gi|302766239|ref|XP_002966540.1| hypothetical protein SELMODRAFT_61257 [Selaginella moellendorffii]
 gi|300165960|gb|EFJ32567.1| hypothetical protein SELMODRAFT_61257 [Selaginella moellendorffii]
          Length = 630

 Score =  261 bits (666), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 168/572 (29%), Positives = 289/572 (50%), Gaps = 39/572 (6%)

Query: 11  LLSNYFKSG---KIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           L+  Y K G    + +A  +FD++P+K+VVSWS +I  Y   G   +++  F  M +   
Sbjct: 40  LIQMYRKCGGTSSLADARAVFDQMPKKDVVSWSCIIAAYGQAGHCREAINLFQRMDVE-- 97

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPY----------- 114
            PN   +V  L A +G ++L L  +IH  ++   L   +F G  L N Y           
Sbjct: 98  -PNEMVIVSTLAACSGAKDLALGMAIHARILSPDLRKSVFVGTALLNMYAKCGAIEQARA 156

Query: 115 ---------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
                    +VS  A++  F      +QA+        + + PN VT +  I  C +   
Sbjct: 157 VFDQIPHKDVVSWTAMITAFAQMGDCRQALETLEGMIQARVQPNPVTFVAAITACSSREF 216

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
                 IH   I LGL  D+++ N+++ MY+     + A+ +F+ ME ++ +SW  M+  
Sbjct: 217 LDRGRKIHAAVIDLGLHGDITIQNALVSMYAKGSSAEEALSVFQRMEDRNRVSWNSMIAA 276

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS- 284
           F     +  A+ +F  M    I  D V+ L ++S  +    L+  K++H+Q+ L  + S 
Sbjct: 277 FAASAQSCAAMGLFHGMNLEGIKPDDVSFLGVLSACSSTRCLRSCKRIHSQLELAAVHSP 336

Query: 285 -ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
            +L + NS++  Y+KCGDL+++  +F +I  K++VSWTA+++ Y  +G   +AL  + KM
Sbjct: 337 PDLSVENSLVTAYAKCGDLEAAERIFQRIPGKNVVSWTAMLTAYTFHGNGSKALELYDKM 396

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
             +     DS+ L++++ A   +  + +  +LH     + F     +QN LI+ Y++CG+
Sbjct: 397 VGQSIQP-DSVVLLNVIYAGSLVGDVGLARKLHARVASSSFMLKIQIQNALINMYTRCGS 455

Query: 404 VDLAYIVFEEMG----FLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           ++ A  VF+ +       RD V+W++++ GY  +GH E A+ LY  M   G  PDS TY+
Sbjct: 456 LEEARRVFDGIERKNLVARDTVTWSSLVAGYAHHGHAEYAILLYRDMHLEGVQPDSVTYV 515

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519
           SILN+C HAGL       F  M+E++ +    +H+ C+VD+L RAG +  A  +   +  
Sbjct: 516 SILNSCSHAGLLAQARHFFVSMVEDHCLAAWPDHWKCMVDVLGRAGFVGRAEDVVRNM-- 573

Query: 520 GMGPNI--WRALLSGCVLHVGRFQDAEALRSG 549
              P++  W  LL  C +H    + A A R+ 
Sbjct: 574 PFQPDVVAWNTLLGCCKVHGDARRGAVAARNA 605



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 119/474 (25%), Positives = 227/474 (47%), Gaps = 21/474 (4%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F+ +    +VS + I+A +      ++A+   N F+   + PN + +++ +  C     
Sbjct: 59  VFDQMPKKDVVSWSCIIAAYGQAGHCREAI---NLFQRMDVEPNEMVIVSTLAACSGAKD 115

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
            AL   IH   +   L   V V  ++L+MY+    ++ A  +F ++  KDV+SWT M+  
Sbjct: 116 LALGMAIHARILSPDLRKSVFVGTALLNMYAKCGAIEQARAVFDQIPHKDVVSWTAMITA 175

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           F        AL+    M ++R+  + V  +  I+  +    L RG+++HA V+  GL  +
Sbjct: 176 FAQMGDCRQALETLEGMIQARVQPNPVTFVAAITACSSREFLDRGRKIHAAVIDLGLHGD 235

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           + + N++++MY+K    + + SVF ++ +++ VSW ++I+ +  +  +  A+  F  M  
Sbjct: 236 ITIQNALVSMYAKGSSAEEALSVFQRMEDRNRVSWNSMIAAFAASAQSCAAMGLFHGMNL 295

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGF--PRYRSVQNCLISSYSKCGN 403
           E     D ++ + +L+A      L  C ++H     A    P   SV+N L+++Y+KCG+
Sbjct: 296 EGIKP-DDVSFLGVLSACSSTRCLRSCKRIHSQLELAAVHSPPDLSVENSLVTAYAKCGD 354

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           ++ A  +F+ +   ++VVSW  ++  Y  +G+G  AL LY KM      PDS   L+++ 
Sbjct: 355 LEAAERIFQRIPG-KNVVSWTAMLTAYTFHGNGSKALELYDKMVGQSIQPDSVVLLNVIY 413

Query: 464 A---CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA----SGLAGK 516
           A    G  GL        +  +  +      +    ++++  R G L +A     G+  K
Sbjct: 414 AGSLVGDVGLARK----LHARVASSSFMLKIQIQNALINMYTRCGSLEEARRVFDGIERK 469

Query: 517 LLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIK--IPGISFLNSTS 568
            L       W +L++G   H G  + A  L      +G+    +  +S LNS S
Sbjct: 470 NLVARDTVTWSSLVAGYAHH-GHAEYAILLYRDMHLEGVQPDSVTYVSILNSCS 522



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 109/221 (49%), Gaps = 9/221 (4%)

Query: 267 LKRGKQLHAQVV-LGGLQSELRLSNSIIAMYSKCG---DLDSSRSVFNQITEKSLVSWTA 322
           L  G+++H  ++  G     + L N +I MY KCG    L  +R+VF+Q+ +K +VSW+ 
Sbjct: 14  LADGRRVHDHILATGHFLRSVHLGNLLIQMYRKCGGTSSLADARAVFDQMPKKDVVSWSC 73

Query: 323 IISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEA 382
           II+ Y Q G  REA+N F +M  E  + V    +VS L A      L + + +H      
Sbjct: 74  IIAAYGQAGHCREAINLFQRMDVEPNEMV----IVSTLAACSGAKDLALGMAIHARILSP 129

Query: 383 GFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALAL 442
              +   V   L++ Y+KCG ++ A  VF+++   +DVVSW  +I  +   G    AL  
Sbjct: 130 DLRKSVFVGTALLNMYAKCGAIEQARAVFDQIPH-KDVVSWTAMITAFAQMGDCRQALET 188

Query: 443 YHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIE 483
              M +    P+  T+++ + AC      + G  I   +I+
Sbjct: 189 LEGMIQARVQPNPVTFVAAITACSSREFLDRGRKIHAAVID 229


>gi|356553444|ref|XP_003545066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Glycine max]
          Length = 1033

 Score =  261 bits (666), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 167/562 (29%), Positives = 299/562 (53%), Gaps = 38/562 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  S L+S + + G I  A+ +F+++ ++N V+ + ++ G +     E++ K F  M 
Sbjct: 284 DLYVGSALVSGFARYGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKIFKEM- 342

Query: 64  LSGLLPNSFTMVGVLVAA-AGLQNLELAR----SIHGLMVKFGL---------------- 102
              L+  + +   VL++A     NL+  +     +H  +++  L                
Sbjct: 343 -KDLVEINASSYAVLLSAFTEFSNLKEGKRKGQEVHAYLIRNALVDVWILIGNALVNLYA 401

Query: 103 -------ESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLT 155
                     +F+ + +   VS N+I++G  +N+ F++AV  F+  R +G+VP+  ++++
Sbjct: 402 KCNAIDNARSIFQLMPSKDTVSWNSIISGLDHNERFEEAVACFHTMRRNGMVPSKFSVIS 461

Query: 156 VIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKD 215
            +  C +LG   L + IHG  IK GL LDVSV+N++L +Y+    ++   ++F  M   D
Sbjct: 462 TLSSCASLGWIMLGQQIHGEGIKCGLDLDVSVSNALLTLYAETDCMEEYQKVFFLMPEYD 521

Query: 216 VISWTRMMGLFVDFEYAG-DALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
            +SW   +G     E +   A+K F EM ++    + V  +N++S  + L  L+ G+Q+H
Sbjct: 522 QVSWNSFIGALATSEASVLQAIKYFLEMMQAGWKPNRVTFINILSAVSSLSLLELGRQIH 581

Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK-SLVSWTAIISGYVQNGCA 333
           A ++   +  +  + N+++A Y KC  ++    +F++++E+   VSW A+ISGY+ NG  
Sbjct: 582 ALILKHSVADDNAIENTLLAFYGKCEQMEDCEIIFSRMSERRDEVSWNAMISGYIHNGIL 641

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC 393
            +A+   + +  +K   +D  TL ++L+A   +A LE  +++H  A  A       V + 
Sbjct: 642 HKAMG-LVWLMMQKGQRLDDFTLATVLSACASVATLERGMEVHACAIRACLEAEVVVGSA 700

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           L+  Y+KCG +D A   FE M  +R++ SWN++I GY  +GHG  AL L+ +M + G++P
Sbjct: 701 LVDMYAKCGKIDYASRFFELMP-VRNIYSWNSMISGYARHGHGGKALKLFTQMKQHGQLP 759

Query: 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL 513
           D  T++ +L+AC H GL ++G   F  M E  ++ P  EH+ C+VDLL RAG +      
Sbjct: 760 DHVTFVGVLSACSHVGLVDEGFEHFKSMGEVYELAPRIEHFSCMVDLLGRAGDVKKLEEF 819

Query: 514 AGKLLEGMGPN--IWRALLSGC 533
              +   M PN  IWR +L  C
Sbjct: 820 IKTM--PMNPNALIWRTILGAC 839



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 149/596 (25%), Positives = 270/596 (45%), Gaps = 58/596 (9%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L++ + ++G +  A+ LFDE+P+KN+VSWS ++ GY+ NG  +++   F  ++
Sbjct: 73  DVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVSGYAQNGMPDEACMLFRGII 132

Query: 64  LSGLLPNSFTMVGVLVAAA--GLQNLELARSIHGLMVKFGLESDL--------------- 106
            +GLLPN + +   L A    G   L+L   IHGL+ K    SD+               
Sbjct: 133 SAGLLPNHYAIGSALRACQELGPNMLKLGMEIHGLISKSPYASDMVLSNVLMSMYSHCSA 192

Query: 107 --------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGL----VPNAVTML 154
                   FE +K     S N+I++ +        A  LF+  +         PN  T  
Sbjct: 193 SIDDARRVFEEIKMKTSASWNSIISVYCRRGDAISAFKLFSSMQREATELNCRPNEYTFC 252

Query: 155 TVIRGCVALGSRALCELIH-GLTIKLGLILDVSVNNSVLDMY--SCLMD-------LDAA 204
           +++           C L+  GLT+   ++  +  ++ V D+Y  S L+        +D+A
Sbjct: 253 SLV--------TVACSLVDCGLTLLEQMLARIEKSSFVKDLYVGSALVSGFARYGLIDSA 304

Query: 205 IQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAIL 264
             IF +M+ ++ ++   +M          +A KIF+EM K  +  +  +   L+S     
Sbjct: 305 KMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKIFKEM-KDLVEINASSYAVLLSAFTEF 363

Query: 265 GDLKRGK----QLHAQVVLGGL-QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVS 319
            +LK GK    ++HA ++   L    + + N+++ +Y+KC  +D++RS+F  +  K  VS
Sbjct: 364 SNLKEGKRKGQEVHAYLIRNALVDVWILIGNALVNLYAKCNAIDNARSIFQLMPSKDTVS 423

Query: 320 WTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIA 379
           W +IISG   N    EA+  F  MR+         +++S L++   L  + +  Q+HG  
Sbjct: 424 WNSIISGLDHNERFEEAVACFHTMRRNGM-VPSKFSVISTLSSCASLGWIMLGQQIHGEG 482

Query: 380 FEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGE-T 438
            + G     SV N L++ Y++   ++    VF  M    D VSWN+ I     +      
Sbjct: 483 IKCGLDLDVSVSNALLTLYAETDCMEEYQKVFFLMPEY-DQVSWNSFIGALATSEASVLQ 541

Query: 439 ALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVV 498
           A+  + +M + G  P+  T+++IL+A     L   G  I + +I ++ V         ++
Sbjct: 542 AIKYFLEMMQAGWKPNRVTFINILSAVSSLSLLELGRQI-HALILKHSVADDNAIENTLL 600

Query: 499 DLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKG 554
               +   + D   +  ++ E      W A++SG  +H G    A  L     +KG
Sbjct: 601 AFYGKCEQMEDCEIIFSRMSERRDEVSWNAMISG-YIHNGILHKAMGLVWLMMQKG 655



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 105/422 (24%), Positives = 206/422 (48%), Gaps = 40/422 (9%)

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           +H    K GL  DV   N++++++    +L +A ++F EM  K+++SW+ ++  +     
Sbjct: 61  LHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVSGYAQNGM 120

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGD--LKRGKQLHAQVVLGGLQSELRLS 289
             +A  +FR +  + ++ +  A+ + +     LG   LK G ++H  +      S++ LS
Sbjct: 121 PDEACMLFRGIISAGLLPNHYAIGSALRACQELGPNMLKLGMEIHGLISKSPYASDMVLS 180

Query: 290 NSIIAMYSKC-GDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
           N +++MYS C   +D +R VF +I  K+  SW +IIS Y + G A  A   F  M++E T
Sbjct: 181 NVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYCRRGDAISAFKLFSSMQREAT 240

Query: 349 D---SVDSITLVSILTASGELA--ALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
           +     +  T  S++T +  L    L +  Q+     ++ F +   V + L+S +++ G 
Sbjct: 241 ELNCRPNEYTFCSLVTVACSLVDCGLTLLEQMLARIEKSSFVKDLYVGSALVSGFARYGL 300

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           +D A ++FE+M   R+ V+ N ++ G      GE A  ++ +M +  E+ ++S+Y  +L+
Sbjct: 301 IDSAKMIFEQMDD-RNAVTMNGLMVGLARQHQGEEAAKIFKEMKDLVEI-NASSYAVLLS 358

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHY---------------GCVVDLLARAGCLS 508
           A             F+ + +E K K  + H                  +V+L A+   + 
Sbjct: 359 A----------FTEFSNL-KEGKRKGQEVHAYLIRNALVDVWILIGNALVNLYAKCNAID 407

Query: 509 DASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGII--KIPGISFLNS 566
           +A  +  +L+       W +++SG + H  RF++A A     ++ G++  K   IS L+S
Sbjct: 408 NARSIF-QLMPSKDTVSWNSIISG-LDHNERFEEAVACFHTMRRNGMVPSKFSVISTLSS 465

Query: 567 TS 568
            +
Sbjct: 466 CA 467



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 120/224 (53%), Gaps = 13/224 (5%)

Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISG 326
           ++   QLH Q+   GL S++   N+++ ++ + G+L S++ +F+++ +K+LVSW+ ++SG
Sbjct: 55  VEDAHQLHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVSG 114

Query: 327 YVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAA--LEICLQLHGIAFEAGF 384
           Y QNG   EA   F  +        +   + S L A  EL    L++ +++HG+  ++ +
Sbjct: 115 YAQNGMPDEACMLFRGIISAGLLP-NHYAIGSALRACQELGPNMLKLGMEIHGLISKSPY 173

Query: 385 PRYRSVQNCLISSYSKC-GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALY 443
                + N L+S YS C  ++D A  VFEE+  ++   SWN+II  Y   G   +A  L+
Sbjct: 174 ASDMVLSNVLMSMYSHCSASIDDARRVFEEIK-MKTSASWNSIISVYCRRGDAISAFKLF 232

Query: 444 HKM----TETGEVPDSSTYLSILN-ACGHAGLTNDGLVIFNQMI 482
             M    TE    P+  T+ S++  AC    L + GL +  QM+
Sbjct: 233 SSMQREATELNCRPNEYTFCSLVTVAC---SLVDCGLTLLEQML 273



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 142/294 (48%), Gaps = 28/294 (9%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHE-KSMKAFSH 61
           +D   S+ LL+ Y ++  ++E + +F  +PE + VSW+  I   + +     +++K F  
Sbjct: 489 LDVSVSNALLTLYAETDCMEEYQKVFFLMPEYDQVSWNSFIGALATSEASVLQAIKYFLE 548

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYL------ 115
           MM +G  PN  T + +L A + L  LEL R IH L++K  +  D    ++N  L      
Sbjct: 549 MMQAGWKPNRVTFINILSAVSSLSLLELGRQIHALILKHSVADD--NAIENTLLAFYGKC 606

Query: 116 -------------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTV 156
                              VS NA+++G+I+N +  +A+ L       G   +  T+ TV
Sbjct: 607 EQMEDCEIIFSRMSERRDEVSWNAMISGYIHNGILHKAMGLVWLMMQKGQRLDDFTLATV 666

Query: 157 IRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
           +  C ++ +      +H   I+  L  +V V ++++DMY+    +D A + F  M  +++
Sbjct: 667 LSACASVATLERGMEVHACAIRACLEAEVVVGSALVDMYAKCGKIDYASRFFELMPVRNI 726

Query: 217 ISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG 270
            SW  M+  +    + G ALK+F +M++   + D V  + ++S  + +G +  G
Sbjct: 727 YSWNSMISGYARHGHGGKALKLFTQMKQHGQLPDHVTFVGVLSACSHVGLVDEG 780


>gi|255559100|ref|XP_002520572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540232|gb|EEF41805.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 695

 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 165/538 (30%), Positives = 285/538 (52%), Gaps = 31/538 (5%)

Query: 27  LFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQN 86
           +F  + +++V++W+ ++  Y     + ++++ F  MM  G+ P+  + V V  A + + +
Sbjct: 56  VFKTMHKRDVIAWNTMVSWYVKTERYVEAIRQFRLMMKWGIKPSPVSFVNVFPAISSVGD 115

Query: 87  LELARSIHGLMVKFGLE--SDLFE--------------GLKNPYLVSC--------NAIV 122
            + A  ++G+++K G E  +DLF                L      SC        N ++
Sbjct: 116 FKNANVLYGMLLKLGNEYANDLFVVSSAISMYAELGCLDLCRKVFDSCLEKSAEVWNTMI 175

Query: 123 AGFINNKLFQQAVLLF-NFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGL 181
            G I N  F + V LF    +    + + VT L+ +     L    L + +H  T+K   
Sbjct: 176 GGHIQNNSFLEGVYLFLQAMKTEHTILDDVTFLSALTAVSQLQCLGLGQQMHAFTMKNHT 235

Query: 182 ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFRE 241
           +L V+V N++L MYS    +  + ++F +M  KDV+SW  M+  F+      + L +  E
Sbjct: 236 VLSVTVLNAILVMYSRCNSVQTSFEVFEKMPEKDVVSWNTMISGFIQNGLDEEGLMLVYE 295

Query: 242 MRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGD 301
           M+K   I D+V + +L+S  + L + + GKQ HA ++  G++ +  + + +I MY+K G 
Sbjct: 296 MQKQGFIADSVTVTSLLSAASNLRNREIGKQTHAYLIRHGIKFD-GMDSYLIDMYAKSGL 354

Query: 302 LDSSRSVF--NQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSI 359
           +  S+ VF  N I  +   +W A+I+GY QNG   +A   F ++  E+    +++TL SI
Sbjct: 355 IRISQRVFENNNIQNRDQATWNAVIAGYTQNGLVEQAFITF-RLMLEQNLRPNAVTLASI 413

Query: 360 LTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRD 419
           L A   L ++ +  QLHG++      +   V+  L+  YSK G ++ A  VF +    R+
Sbjct: 414 LPACSSLGSINLGKQLHGVSIRYSLDQNIFVRTALVDMYSKSGAINYAESVFTQSS-ERN 472

Query: 420 VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFN 479
            V++ T+I GYG +G GE AL+L+H M ++G  PD+ T++++L+AC +AGL ++GL IF 
Sbjct: 473 SVTYTTMILGYGQHGMGENALSLFHSMKKSGIQPDAITFVAVLSACSYAGLVDEGLRIFE 532

Query: 480 QMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL-LEGMGPNIWRALLSGCVLH 536
            M  + K++PS  HY CV D+L R G + +A     +L  EG    IW +LL  C LH
Sbjct: 533 SMKRDFKIQPSTAHYCCVADMLGRVGRVIEAYEFVKQLGEEGHVIEIWGSLLGACRLH 590



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 85/264 (32%), Positives = 145/264 (54%), Gaps = 3/264 (1%)

Query: 206 QIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILG 265
           ++F+ M  +DVI+W  M+  +V  E   +A++ FR M K  I    V+ +N+    + +G
Sbjct: 55  KVFKTMHKRDVIAWNTMVSWYVKTERYVEAIRQFRLMMKWGIKPSPVSFVNVFPAISSVG 114

Query: 266 DLKRGKQLHAQVVLGGLQ--SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAI 323
           D K    L+  ++  G +  ++L + +S I+MY++ G LD  R VF+   EKS   W  +
Sbjct: 115 DFKNANVLYGMLLKLGNEYANDLFVVSSAISMYAELGCLDLCRKVFDSCLEKSAEVWNTM 174

Query: 324 ISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG 383
           I G++QN    E +  F++  + +   +D +T +S LTA  +L  L +  Q+H    +  
Sbjct: 175 IGGHIQNNSFLEGVYLFLQAMKTEHTILDDVTFLSALTAVSQLQCLGLGQQMHAFTMKNH 234

Query: 384 FPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALY 443
                +V N ++  YS+C +V  ++ VFE+M   +DVVSWNT+I G+  NG  E  L L 
Sbjct: 235 TVLSVTVLNAILVMYSRCNSVQTSFEVFEKMP-EKDVVSWNTMISGFIQNGLDEEGLMLV 293

Query: 444 HKMTETGEVPDSSTYLSILNACGH 467
           ++M + G + DS T  S+L+A  +
Sbjct: 294 YEMQKQGFIADSVTVTSLLSAASN 317



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 147/283 (51%), Gaps = 23/283 (8%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           +L  Y +   ++ +  +F+++PEK+VVSW+ +I G+  NG  E+ +     M   G + +
Sbjct: 245 ILVMYSRCNSVQTSFEVFEKMPEKDVVSWNTMISGFIQNGLDEEGLMLVYEMQKQGFIAD 304

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------LFE- 108
           S T+  +L AA+ L+N E+ +  H  +++ G++ D                     +FE 
Sbjct: 305 SVTVTSLLSAASNLRNREIGKQTHAYLIRHGIKFDGMDSYLIDMYAKSGLIRISQRVFEN 364

Query: 109 -GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRA 167
             ++N    + NA++AG+  N L +QA + F       L PNAVT+ +++  C +LGS  
Sbjct: 365 NNIQNRDQATWNAVIAGYTQNGLVEQAFITFRLMLEQNLRPNAVTLASILPACSSLGSIN 424

Query: 168 LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
           L + +HG++I+  L  ++ V  +++DMYS    ++ A  +F +   ++ +++T M+  + 
Sbjct: 425 LGKQLHGVSIRYSLDQNIFVRTALVDMYSKSGAINYAESVFTQSSERNSVTYTTMILGYG 484

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG 270
                 +AL +F  M+KS I  D +  + ++S  +  G +  G
Sbjct: 485 QHGMGENALSLFHSMKKSGIQPDAITFVAVLSACSYAGLVDEG 527



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 113/492 (22%), Positives = 223/492 (45%), Gaps = 39/492 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGY-SINGFHEKSMKAFSHM 62
           D +  S  +S Y + G +     +FD   EK+   W+ +I G+   N F E        M
Sbjct: 136 DLFVVSSAISMYAELGCLDLCRKVFDSCLEKSAEVWNTMIGGHIQNNSFLEGVYLFLQAM 195

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK----------------------F 100
                + +  T +  L A + LQ L L + +H   +K                       
Sbjct: 196 KTEHTILDDVTFLSALTAVSQLQCLGLGQQMHAFTMKNHTVLSVTVLNAILVMYSRCNSV 255

Query: 101 GLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
               ++FE +    +VS N +++GFI N L ++ ++L    +  G + ++VT+ +++   
Sbjct: 256 QTSFEVFEKMPEKDVVSWNTMISGFIQNGLDEEGLMLVYEMQKQGFIADSVTVTSLLSAA 315

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMY--SCLMDLDAAIQIFREMECKDVIS 218
             L +R + +  H   I+ G+  D  +++ ++DMY  S L+ +   +     ++ +D  +
Sbjct: 316 SNLRNREIGKQTHAYLIRHGIKFD-GMDSYLIDMYAKSGLIRISQRVFENNNIQNRDQAT 374

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           W  ++  +        A   FR M +  +  + V L +++   + LG +  GKQLH   +
Sbjct: 375 WNAVIAGYTQNGLVEQAFITFRLMLEQNLRPNAVTLASILPACSSLGSINLGKQLHGVSI 434

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
              L   + +  +++ MYSK G ++ + SVF Q +E++ V++T +I GY Q+G    AL+
Sbjct: 435 RYSLDQNIFVRTALVDMYSKSGAINYAESVFTQSSERNSVTYTTMILGYGQHGMGENALS 494

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN------ 392
            F  M++      D+IT V++L+A      ++  L++    FE+   R   +Q       
Sbjct: 495 LFHSMKKSGIQP-DAITFVAVLSACSYAGLVDEGLRI----FES-MKRDFKIQPSTAHYC 548

Query: 393 CLISSYSKCGNVDLAYIVFEEMGFLRDVVS-WNTIIYGYGVNGHGETALALYHKMTETGE 451
           C+     + G V  AY   +++G    V+  W +++    ++GH E    + +++ E   
Sbjct: 549 CVADMLGRVGRVIEAYEFVKQLGEEGHVIEIWGSLLGACRLHGHIELGEEVSNRLLEMNS 608

Query: 452 VPDSSTYLSILN 463
           V   + Y  +L+
Sbjct: 609 VDRLAGYQVLLS 620


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 164/583 (28%), Positives = 288/583 (49%), Gaps = 57/583 (9%)

Query: 42  VIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG 101
           ++ G++  G +      F  ++  G  P+++T+  V+ A   L+NL++ R IH ++ KFG
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60

Query: 102 LESD----------------------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFN 139
           L+ D                      LF+ ++   LV+   ++ G+       ++++LF 
Sbjct: 61  LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFE 120

Query: 140 FFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLM 199
             R  G+VP+ V M+TV+  C  LG+     +I     +    LDV +  +++DMY+   
Sbjct: 121 KMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCG 180

Query: 200 DLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLIS 259
            +++A +IF  ME K+VISW+ M+  +        AL +FR M  S ++ D + L +L+ 
Sbjct: 181 CVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLY 240

Query: 260 VNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVS 319
             + L +L+ G+ +H  V   GL  +  +  +++ MY KC +++ +R +F+++ E+ LV+
Sbjct: 241 ACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVT 300

Query: 320 WTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIA 379
           WT +I GY + G A E+L  F KMR+E     D + +V+++ A  +L A+     +    
Sbjct: 301 WTVMIGGYAECGNANESLVLFDKMREEGV-VPDKVAMVTVVFACAKLGAMHKARTIDDYI 359

Query: 380 FEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETA 439
               F     +   +I  ++KCG V+ A  +F+ M   ++V+SW+ +I  YG +G G  A
Sbjct: 360 QRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRME-EKNVISWSAMIAAYGYHGQGRKA 418

Query: 440 LALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVD 499
           L L+  M  +G +P+  T +S+L AC HAGL  +GL  F+ M E+  V+   +HY CVVD
Sbjct: 419 LDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVD 478

Query: 500 LLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH----------------------- 536
           LL RAG L +A  L   +       +W A L  C  H                       
Sbjct: 479 LLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGH 538

Query: 537 ----------VGRFQDAEALRSGSQKKGIIKIPGISFLNSTSR 569
                      GR++D    R    ++ + KIPG +++   ++
Sbjct: 539 YILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNK 581



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 119/448 (26%), Positives = 238/448 (53%), Gaps = 24/448 (5%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  + L+  Y K  +I++A  LFD++ E+++V+W+++I GY+  G   +S+  F  M
Sbjct: 63  LDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKM 122

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLM--VKFGLE----------------- 103
              G++P+   MV V+ A A L  +  AR I   +   KF L+                 
Sbjct: 123 REEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCV 182

Query: 104 ---SDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
               ++F+ ++   ++S +A++A +  +   ++A+ LF     SG++P+ +T+ +++  C
Sbjct: 183 ESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYAC 242

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             L +  +  LIH +  K GL LD  V  +++DMY    +++ A  +F +M  +D+++WT
Sbjct: 243 SDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWT 302

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+G + +   A ++L +F +MR+  ++ D VA++ ++   A LG + + + +   +   
Sbjct: 303 VMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRK 362

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
             Q ++ L  ++I M++KCG ++S+R +F+++ EK+++SW+A+I+ Y  +G  R+AL+ F
Sbjct: 363 KFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLF 422

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ-NCLISSYS 399
             M +      + ITLVS+L A      +E  L+   + +E    R       C++    
Sbjct: 423 PMMLRSGILP-NKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLG 481

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTII 427
           + G +D A  + E M   +D   W   +
Sbjct: 482 RAGRLDEALKLIESMTVEKDEGLWGAFL 509


>gi|357131819|ref|XP_003567531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Brachypodium distachyon]
          Length = 822

 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 173/615 (28%), Positives = 290/615 (47%), Gaps = 57/615 (9%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y  + L++ Y K G I  A  +FD +P KN V+W+ VI GYS  G    +++ F  M L 
Sbjct: 150 YVGTALINLYAKVGCIDAAMLVFDALPVKNPVTWTAVITGYSQIGQGGVALELFGKMGLD 209

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-------------------- 105
           G+ P+ F +   + A + L  LE  R  HG   +  +E+D                    
Sbjct: 210 GVRPDRFVLASAVSACSALGFLEGGRQTHGYAYRIAVETDASVINALIDLYCKCSRLSLA 269

Query: 106 --LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
             LF+ ++N  LVS   ++AG++ N    +A+ +F      G  P+     +++  C +L
Sbjct: 270 RKLFDCMENRNLVSWTTMIAGYMQNSCDAEAMAMFWQLSQEGWQPDVFACASILNSCGSL 329

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
            +      +H   IK  L  D  V NS++DMY+    L  A  +F  +   D IS+  M+
Sbjct: 330 AAIWQGRQVHAHAIKANLESDEYVKNSLIDMYAKCEHLTEARAVFEALAEDDAISYNAMI 389

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
             +        A+ +F +MR   +    +  ++L+ V++    ++  KQ+H  +V  G  
Sbjct: 390 EGYSRLGDLAGAIDVFSKMRYCSLKPSPLTFVSLLGVSSSQSAIELSKQIHGLIVKSGTS 449

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
            +L   +S+I +YSK   ++ +++VFN +  + +V W A+I G  QN    EA+  F ++
Sbjct: 450 LDLYAGSSLIDVYSKFSLVEDAKAVFNLMHNRDMVIWNAMIFGLAQNEQGEEAVKLFNQL 509

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
            Q    + +  T V+++T +  L ++    Q H    +AG      V N LI  Y+KCG 
Sbjct: 510 -QVSGLAPNEFTFVALVTVASTLVSMFHGQQFHAQIIKAGADSDHHVSNALIDMYAKCGF 568

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           +    ++FE     +DV+ WN++I  Y  +G  E AL ++  M  TG  P+  T++ +L+
Sbjct: 569 IKEGRLLFEST-LGKDVICWNSMISTYAQHGQAEEALYVFRMMGGTGVEPNYVTFVGVLS 627

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
           AC HAGL ++GL  F+ M  +  ++P  EHY  VV+L  R+G L  A     ++      
Sbjct: 628 ACAHAGLVDEGLRHFDFMKTKYAIEPGTEHYASVVNLFGRSGKLHAAKEFIERMPIEPAA 687

Query: 524 NIWRALLSGCVL----HVGRF-----------------------------QDAEALRSGS 550
            +WR+LLS C L     +GR+                              DA+ LR G 
Sbjct: 688 AVWRSLLSACHLFGNVEIGRYATEMALLADPADSGPSVLMSNIYASRGLWSDAQKLRQGM 747

Query: 551 QKKGIIKIPGISFLN 565
              G++K PG S++ 
Sbjct: 748 DCAGVVKEPGYSWIE 762



 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 152/572 (26%), Positives = 280/572 (48%), Gaps = 45/572 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + ++ LL  Y K G++++A  LFD +P KN+VSW   I  ++ +G  E ++  F+   
Sbjct: 45  DLFLANLLLRAYSKLGRVRDARRLFDRMPHKNLVSWGSAISMHAQHGCEEDAVALFAAFQ 104

Query: 64  LS--GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG------------ 109
            +  G  PN F +   L A A  + +   + +HG+ V+ GL+ +++ G            
Sbjct: 105 RASGGEAPNEFLLASALRACAQSRAVSFGQQVHGVAVRIGLDGNVYVGTALINLYAKVGC 164

Query: 110 ------------LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
                       +KNP  V+  A++ G+        A+ LF      G+ P+   + + +
Sbjct: 165 IDAAMLVFDALPVKNP--VTWTAVITGYSQIGQGGVALELFGKMGLDGVRPDRFVLASAV 222

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
             C ALG        HG   ++ +  D SV N+++D+Y     L  A ++F  ME ++++
Sbjct: 223 SACSALGFLEGGRQTHGYAYRIAVETDASVINALIDLYCKCSRLSLARKLFDCMENRNLV 282

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           SWT M+  ++      +A+ +F ++ +     D  A  ++++    L  + +G+Q+HA  
Sbjct: 283 SWTTMIAGYMQNSCDAEAMAMFWQLSQEGWQPDVFACASILNSCGSLAAIWQGRQVHAHA 342

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           +   L+S+  + NS+I MY+KC  L  +R+VF  + E   +S+ A+I GY + G    A+
Sbjct: 343 IKANLESDEYVKNSLIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGYSRLGDLAGAI 402

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
           + F KMR         +T VS+L  S   +A+E+  Q+HG+  ++G        + LI  
Sbjct: 403 DVFSKMRYCSLKP-SPLTFVSLLGVSSSQSAIELSKQIHGLIVKSGTSLDLYAGSSLIDV 461

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           YSK   V+ A  VF  M   RD+V WN +I+G   N  GE A+ L++++  +G  P+  T
Sbjct: 462 YSKFSLVEDAKAVFNLM-HNRDMVIWNAMIFGLAQNEQGEEAVKLFNQLQVSGLAPNEFT 520

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY--GCVVDLLARAGCLSDASGLAG 515
           +++++           G     Q+I   K     +H+    ++D+ A+ G + +     G
Sbjct: 521 FVALVTVASTLVSMFHGQQFHAQII---KAGADSDHHVSNALIDMYAKCGFIKE-----G 572

Query: 516 KLL--EGMGPNI--WRALLSGCVLHVGRFQDA 543
           +LL    +G ++  W +++S    H G+ ++A
Sbjct: 573 RLLFESTLGKDVICWNSMISTYAQH-GQAEEA 603



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 114/407 (28%), Positives = 208/407 (51%), Gaps = 17/407 (4%)

Query: 58  AFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVS 117
           A +  +++G LP+ F    +L A + L  +  AR              LF+ + +  LVS
Sbjct: 33  AHARAVVTGALPDLFLANLLLRAYSKLGRVRDARR-------------LFDRMPHKNLVS 79

Query: 118 CNAIVAGFINNKLFQQAVLLFNFFRGS--GLVPNAVTMLTVIRGCVALGSRALCELIHGL 175
             + ++    +   + AV LF  F+ +  G  PN   + + +R C    + +  + +HG+
Sbjct: 80  WGSAISMHAQHGCEEDAVALFAAFQRASGGEAPNEFLLASALRACAQSRAVSFGQQVHGV 139

Query: 176 TIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDA 235
            +++GL  +V V  +++++Y+ +  +DAA+ +F  +  K+ ++WT ++  +      G A
Sbjct: 140 AVRIGLDGNVYVGTALINLYAKVGCIDAAMLVFDALPVKNPVTWTAVITGYSQIGQGGVA 199

Query: 236 LKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAM 295
           L++F +M    +  D   L + +S  + LG L+ G+Q H       ++++  + N++I +
Sbjct: 200 LELFGKMGLDGVRPDRFVLASAVSACSALGFLEGGRQTHGYAYRIAVETDASVINALIDL 259

Query: 296 YSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSIT 355
           Y KC  L  +R +F+ +  ++LVSWT +I+GY+QN C  EA+  F ++ QE     D   
Sbjct: 260 YCKCSRLSLARKLFDCMENRNLVSWTTMIAGYMQNSCDAEAMAMFWQLSQEGWQP-DVFA 318

Query: 356 LVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMG 415
             SIL + G LAA+    Q+H  A +A       V+N LI  Y+KC ++  A  VFE + 
Sbjct: 319 CASILNSCGSLAAIWQGRQVHAHAIKANLESDEYVKNSLIDMYAKCEHLTEARAVFEALA 378

Query: 416 FLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
              D +S+N +I GY   G    A+ ++ KM      P   T++S+L
Sbjct: 379 -EDDAISYNAMIEGYSRLGDLAGAIDVFSKMRYCSLKPSPLTFVSLL 424



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 101/354 (28%), Positives = 170/354 (48%), Gaps = 5/354 (1%)

Query: 168 LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
           L  L H   +  G + D+ + N +L  YS L  +  A ++F  M  K+++SW   + +  
Sbjct: 29  LLPLAHARAVVTGALPDLFLANLLLRAYSKLGRVRDARRLFDRMPHKNLVSWGSAISMHA 88

Query: 228 DFEYAGDALKIFREMRKSR--IICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
                 DA+ +F   +++      +   L + +   A    +  G+Q+H   V  GL   
Sbjct: 89  QHGCEEDAVALFAAFQRASGGEAPNEFLLASALRACAQSRAVSFGQQVHGVAVRIGLDGN 148

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           + +  ++I +Y+K G +D++  VF+ +  K+ V+WTA+I+GY Q G    AL  F KM  
Sbjct: 149 VYVGTALINLYAKVGCIDAAMLVFDALPVKNPVTWTAVITGYSQIGQGGVALELFGKMGL 208

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
           +     D   L S ++A   L  LE   Q HG A+        SV N LI  Y KC  + 
Sbjct: 209 DGVRP-DRFVLASAVSACSALGFLEGGRQTHGYAYRIAVETDASVINALIDLYCKCSRLS 267

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
           LA  +F+ M   R++VSW T+I GY  N     A+A++ ++++ G  PD     SILN+C
Sbjct: 268 LARKLFDCMEN-RNLVSWTTMIAGYMQNSCDAEAMAMFWQLSQEGWQPDVFACASILNSC 326

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519
           G       G  +    I+ N ++  +     ++D+ A+   L++A  +   L E
Sbjct: 327 GSLAAIWQGRQVHAHAIKAN-LESDEYVKNSLIDMYAKCEHLTEARAVFEALAE 379



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 157/347 (45%), Gaps = 24/347 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + L+  Y K   + EA  +F+ + E + +S++ +I GYS  G    ++  FS M 
Sbjct: 350 DEYVKNSLIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGYSRLGDLAGAIDVFSKMR 409

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG-------------- 109
              L P+  T V +L  ++    +EL++ IHGL+VK G   DL+ G              
Sbjct: 410 YCSLKPSPLTFVSLLGVSSSQSAIELSKQIHGLIVKSGTSLDLYAGSSLIDVYSKFSLVE 469

Query: 110 --------LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                   + N  +V  NA++ G   N+  ++AV LFN  + SGL PN  T + ++    
Sbjct: 470 DAKAVFNLMHNRDMVIWNAMIFGLAQNEQGEEAVKLFNQLQVSGLAPNEFTFVALVTVAS 529

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            L S    +  H   IK G   D  V+N+++DMY+    +     +F     KDVI W  
Sbjct: 530 TLVSMFHGQQFHAQIIKAGADSDHHVSNALIDMYAKCGFIKEGRLLFESTLGKDVICWNS 589

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG-KQLHAQVVLG 280
           M+  +     A +AL +FR M  + +  + V  + ++S  A  G +  G +         
Sbjct: 590 MISTYAQHGQAEEALYVFRMMGGTGVEPNYVTFVGVLSACAHAGLVDEGLRHFDFMKTKY 649

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISG 326
            ++       S++ ++ + G L +++    ++  E +   W +++S 
Sbjct: 650 AIEPGTEHYASVVNLFGRSGKLHAAKEFIERMPIEPAAAVWRSLLSA 696



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 132/277 (47%), Gaps = 13/277 (4%)

Query: 274 HAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA 333
           HA+ V+ G   +L L+N ++  YSK G +  +R +F+++  K+LVSW + IS + Q+GC 
Sbjct: 34  HARAVVTGALPDLFLANLLLRAYSKLGRVRDARRLFDRMPHKNLVSWGSAISMHAQHGCE 93

Query: 334 REALNQFIKM-RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN 392
            +A+  F    R    ++ +   L S L A  +  A+    Q+HG+A   G      V  
Sbjct: 94  EDAVALFAAFQRASGGEAPNEFLLASALRACAQSRAVSFGQQVHGVAVRIGLDGNVYVGT 153

Query: 393 CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV 452
            LI+ Y+K G +D A +VF+ +  +++ V+W  +I GY   G G  AL L+ KM   G  
Sbjct: 154 ALINLYAKVGCIDAAMLVFDALP-VKNPVTWTAVITGYSQIGQGGVALELFGKMGLDGVR 212

Query: 453 PDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASG 512
           PD     S ++AC   G    G     +       + + E    V++ L    C      
Sbjct: 213 PDRFVLASAVSACSALGFLEGG-----RQTHGYAYRIAVETDASVINALIDLYCKCSRLS 267

Query: 513 LAGKLLEGMGPNIWRALLSGCVLHVGRFQ---DAEAL 546
           LA KL + M     R L+S   +  G  Q   DAEA+
Sbjct: 268 LARKLFDCMEN---RNLVSWTTMIAGYMQNSCDAEAM 301



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 92/184 (50%), Gaps = 22/184 (11%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D Y  S L+  Y K   +++A+ +F+ +  +++V W+ +I G + N   E+++K F+ +
Sbjct: 450 LDLYAGSSLIDVYSKFSLVEDAKAVFNLMHNRDMVIWNAMIFGLAQNEQGEEAVKLFNQL 509

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
            +SGL PN FT V ++  A+ L ++   +  H  ++K G +SD                 
Sbjct: 510 QVSGLAPNEFTFVALVTVASTLVSMFHGQQFHAQIIKAGADSDHHVSNALIDMYAKCGFI 569

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                LFE      ++  N++++ +  +   ++A+ +F    G+G+ PN VT + V+  C
Sbjct: 570 KEGRLLFESTLGKDVICWNSMISTYAQHGQAEEALYVFRMMGGTGVEPNYVTFVGVLSAC 629

Query: 161 VALG 164
              G
Sbjct: 630 AHAG 633


>gi|302809659|ref|XP_002986522.1| hypothetical protein SELMODRAFT_124407 [Selaginella moellendorffii]
 gi|300145705|gb|EFJ12379.1| hypothetical protein SELMODRAFT_124407 [Selaginella moellendorffii]
          Length = 625

 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 161/567 (28%), Positives = 289/567 (50%), Gaps = 39/567 (6%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+S Y +SG ++ A  +FD I  K+++SW+ ++  YS +G  E+ ++ F  M +    P+
Sbjct: 48  LVSAYTRSGDLRSARKVFDSIENKDLISWNSMVVAYSQHGHGEEMLELFRKMDVE---PD 104

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFE 108
           S T   +L A + ++ LEL + +H  + +   +SD                      +F+
Sbjct: 105 SITYASILGACSAMELLELGKEVHARVSRSRFKSDPALAAALINMYSKCGVLESARRVFD 164

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
           G+++      NA+++G + +   ++A+ LF   +   +  + V+ LT++  C AL     
Sbjct: 165 GIQSVDPSPWNAMISGLVQHGRAREALGLFERMKAESVRIDKVSYLTILSACCALEDLHE 224

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM-ECKDVISWTRMMGLFV 227
              IH      G+  D+ V  +V +MYS    +D A ++F  M E  +V+SW  M+  + 
Sbjct: 225 GIRIHEHASACGMDKDLVVETAVFNMYSKCRQVDLARKMFDGMNEKTNVVSWNSMIAAYA 284

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
                 +AL+++  M++  +  D +     +      G   +G ++H+++    +++++ 
Sbjct: 285 QSGRGREALELYELMKEEGVQPDDITYAGALGACTSYGGSAKGAEIHSRITESKIRTDVF 344

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
           L  +I+ MY+KCG+L+++ S F ++  K+ V+W+A++  ++Q G  REAL+ +++M  E 
Sbjct: 345 LDTAIVNMYAKCGELETAMSYFEKMRRKNAVTWSAMVGAFIQQGYDREALDLYLRMVSEG 404

Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL------ISSYSKC 401
               + ITL   L A   + AL+      G A  +      ++QNCL      ++ Y+KC
Sbjct: 405 FQPSE-ITLAGALAACSRIGALQ-----EGKAIHSRIQATETLQNCLFLQNSLLNMYAKC 458

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G + +A  +F  +   RD  SWNTII G+  +G  +  L+L+ +M + G  PD  T+  +
Sbjct: 459 GCLAIANTMFSNLQ-RRDSFSWNTIIVGHAHHGDVDEVLSLHGEMVQDGVDPDYVTFACV 517

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L AC HAGL + G   F  M  +  +KP  +HY C+VD+L+RAG   +A  LA  +    
Sbjct: 518 LLACSHAGLLDRGRSHFLSMTGDYCIKPMLDHYECLVDVLSRAGWAREAEALAMAMPFTP 577

Query: 522 GPNIWRALLSGCVLHVGRFQDAEALRS 548
            P  W  LL  C LH    +  EA RS
Sbjct: 578 RPVTWTTLLGACKLHGETKRGVEAARS 604



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 121/366 (33%), Positives = 191/366 (52%), Gaps = 8/366 (2%)

Query: 145 GLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAA 204
           G  PN VT   V   C     R   + I           +V V NS++  Y+   DL +A
Sbjct: 5   GFRPNGVTFSGVASSC---SGREELDTIQASIAASDFHSNVVVKNSLVSAYTRSGDLRSA 61

Query: 205 IQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAIL 264
            ++F  +E KD+ISW  M+  +    +  + L++FR+M    +  D++   +++   + +
Sbjct: 62  RKVFDSIENKDLISWNSMVVAYSQHGHGEEMLELFRKM---DVEPDSITYASILGACSAM 118

Query: 265 GDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAII 324
             L+ GK++HA+V     +S+  L+ ++I MYSKCG L+S+R VF+ I       W A+I
Sbjct: 119 ELLELGKEVHARVSRSRFKSDPALAAALINMYSKCGVLESARRVFDGIQSVDPSPWNAMI 178

Query: 325 SGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGF 384
           SG VQ+G AREAL  F +M+ E    +D ++ ++IL+A   L  L   +++H  A   G 
Sbjct: 179 SGLVQHGRAREALGLFERMKAESV-RIDKVSYLTILSACCALEDLHEGIRIHEHASACGM 237

Query: 385 PRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH 444
            +   V+  + + YSKC  VDLA  +F+ M    +VVSWN++I  Y  +G G  AL LY 
Sbjct: 238 DKDLVVETAVFNMYSKCRQVDLARKMFDGMNEKTNVVSWNSMIAAYAQSGRGREALELYE 297

Query: 445 KMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARA 504
            M E G  PD  TY   L AC   G +  G  I ++ I E+K++        +V++ A+ 
Sbjct: 298 LMKEEGVQPDDITYAGALGACTSYGGSAKGAEIHSR-ITESKIRTDVFLDTAIVNMYAKC 356

Query: 505 GCLSDA 510
           G L  A
Sbjct: 357 GELETA 362



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 118/476 (24%), Positives = 223/476 (46%), Gaps = 25/476 (5%)

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLEL------ARSIHG-LMVKFGLES---------- 104
           M+L G  PN  T  GV  + +G + L+       A   H  ++VK  L S          
Sbjct: 1   MLLEGFRPNGVTFSGVASSCSGREELDTIQASIAASDFHSNVVVKNSLVSAYTRSGDLRS 60

Query: 105 --DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA 162
              +F+ ++N  L+S N++V  +  +   ++   +   FR   + P+++T  +++  C A
Sbjct: 61  ARKVFDSIENKDLISWNSMVVAYSQHGHGEE---MLELFRKMDVEPDSITYASILGACSA 117

Query: 163 LGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
           +    L + +H    +     D ++  ++++MYS    L++A ++F  ++  D   W  M
Sbjct: 118 MELLELGKEVHARVSRSRFKSDPALAAALINMYSKCGVLESARRVFDGIQSVDPSPWNAM 177

Query: 223 MGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL 282
           +   V    A +AL +F  M+   +  D V+ L ++S    L DL  G ++H      G+
Sbjct: 178 ISGLVQHGRAREALGLFERMKAESVRIDKVSYLTILSACCALEDLHEGIRIHEHASACGM 237

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKS-LVSWTAIISGYVQNGCAREALNQFI 341
             +L +  ++  MYSKC  +D +R +F+ + EK+ +VSW ++I+ Y Q+G  REAL  + 
Sbjct: 238 DKDLVVETAVFNMYSKCRQVDLARKMFDGMNEKTNVVSWNSMIAAYAQSGRGREALELYE 297

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
            M++E     D IT    L A           ++H    E+       +   +++ Y+KC
Sbjct: 298 LMKEEGVQP-DDITYAGALGACTSYGGSAKGAEIHSRITESKIRTDVFLDTAIVNMYAKC 356

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G ++ A   FE+M   ++ V+W+ ++  +   G+   AL LY +M   G  P   T    
Sbjct: 357 GELETAMSYFEKMR-RKNAVTWSAMVGAFIQQGYDREALDLYLRMVSEGFQPSEITLAGA 415

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL 517
           L AC   G   +G  I +++     ++        ++++ A+ GCL+ A+ +   L
Sbjct: 416 LAACSRIGALQEGKAIHSRIQATETLQNCLFLQNSLLNMYAKCGCLAIANTMFSNL 471



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 112/487 (22%), Positives = 223/487 (45%), Gaps = 31/487 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           DP  ++ L++ Y K G ++ A  +FD I   +   W+ +I G   +G   +++  F  M 
Sbjct: 139 DPALAAALINMYSKCGVLESARRVFDGIQSVDPSPWNAMISGLVQHGRAREALGLFERMK 198

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------- 106
              +  +  + + +L A   L++L     IH      G++ DL                 
Sbjct: 199 AESVRIDKVSYLTILSACCALEDLHEGIRIHEHASACGMDKDLVVETAVFNMYSKCRQVD 258

Query: 107 -----FEGL-KNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                F+G+ +   +VS N+++A +  +   ++A+ L+   +  G+ P+ +T    +  C
Sbjct: 259 LARKMFDGMNEKTNVVSWNSMIAAYAQSGRGREALELYELMKEEGVQPDDITYAGALGAC 318

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
            + G  A    IH    +  +  DV ++ ++++MY+   +L+ A+  F +M  K+ ++W+
Sbjct: 319 TSYGGSAKGAEIHSRITESKIRTDVFLDTAIVNMYAKCGELETAMSYFEKMRRKNAVTWS 378

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV-VL 279
            M+G F+   Y  +AL ++  M         + L   ++  + +G L+ GK +H+++   
Sbjct: 379 AMVGAFIQQGYDREALDLYLRMVSEGFQPSEITLAGALAACSRIGALQEGKAIHSRIQAT 438

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
             LQ+ L L NS++ MY+KCG L  + ++F+ +  +   SW  II G+  +G   E L+ 
Sbjct: 439 ETLQNCLFLQNSLLNMYAKCGCLAIANTMFSNLQRRDSFSWNTIIVGHAHHGDVDEVLSL 498

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGF---PRYRSVQNCLIS 396
             +M Q+  D  D +T   +L A      L+   + H ++    +   P     + CL+ 
Sbjct: 499 HGEMVQDGVDP-DYVTFACVLLACSHAGLLDRG-RSHFLSMTGDYCIKPMLDHYE-CLVD 555

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
             S+ G    A  +   M F    V+W T++    ++G  +  +     + E G    SS
Sbjct: 556 VLSRAGWAREAEALAMAMPFTPRPVTWTTLLGACKLHGETKRGVEAARSLLELG-FECSS 614

Query: 457 TYLSILN 463
           +Y+ + N
Sbjct: 615 SYVLLSN 621


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 187/663 (28%), Positives = 310/663 (46%), Gaps = 109/663 (16%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKN--VVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           +S L+S Y   G +  A +L    P  +  V  W+ +I  Y  NG   K + +F  M   
Sbjct: 62  TSHLISTYISLGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHSL 121

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPY--------- 114
              P+++T   V  A   + ++    S H L    G  S++F G  L   Y         
Sbjct: 122 SWTPDNYTFPFVFKACGEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDA 181

Query: 115 -----------LVSCNAIVAGFINNKLFQQAVLLFNFFRGS-GLVPNAVTMLTVIRGCVA 162
                      +VS N+I+  +      + A+ +F+      G  P+ +T++ V+  C +
Sbjct: 182 RKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCAS 241

Query: 163 LGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
           +G+R+L +  HG  +   +I ++ V N ++DMY+    +D A  +F  M  KDV+SW  M
Sbjct: 242 VGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAM 301

Query: 223 MGLFVDFEYAGDALKIFREMRKSRIICDTVA----------------------------- 253
           +  +       DA+++F +M++ +I  D V                              
Sbjct: 302 VAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGI 361

Query: 254 ------LLNLISVNAILGDLKRGKQLHAQVVL-------GGLQSELRLSNSIIAMYSKCG 300
                 L++++S  A +G L  GK++H   +         G   E  + N +I MY+KC 
Sbjct: 362 KPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCK 421

Query: 301 DLDSSRSVFNQIT--EKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDS-VDSITLV 357
            +D +R++F+ ++  E+ +V+WT +I GY Q+G A +AL    +M +E   +  ++ T+ 
Sbjct: 422 KVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTIS 481

Query: 358 SILTASGELAALEICLQLHGIAF---EAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM 414
             L A   LAAL I  Q+H  A    +   P +  V NCLI  Y+KCG++  A +VF+ M
Sbjct: 482 CALVACASLAALSIGKQIHAYALRNQQNAVPLF--VSNCLIDMYAKCGDIGDARLVFDNM 539

Query: 415 GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDG 474
              ++ V+W +++ GYG++G+GE AL ++ +M   G   D  T L +L AC H+G+ + G
Sbjct: 540 -MEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGMIDQG 598

Query: 475 LVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCV 534
           +  FN+M  +  V P  EHY C+VDLL RAG L+ A  L  ++     P +W ALLS C 
Sbjct: 599 MEYFNRMKTDFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVALLSCCR 658

Query: 535 LH---------------------------------VGRFQDAEALRSGSQKKGIIKIPGI 561
           +H                                  GR++D   +RS  + KGI K PG 
Sbjct: 659 IHGKVELGEYAAKKITELASNNDGSYTLLSNMYANAGRWKDVTRIRSLMRHKGIKKRPGC 718

Query: 562 SFL 564
           S++
Sbjct: 719 SWV 721


>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
 gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
          Length = 936

 Score =  260 bits (664), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 166/615 (26%), Positives = 293/615 (47%), Gaps = 57/615 (9%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D + ++ L++ Y K G + +A  +FD +P ++V +W+ +I  YSI+    ++   F  M
Sbjct: 193 LDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRM 252

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG------------- 109
              G   +  T + +L A    + L+  + +   + +   E DLF G             
Sbjct: 253 QQEGERCDRVTFLSILDACVNPETLQHGKHVRESISETSFELDLFVGTALITMYARCRSP 312

Query: 110 ---------LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                    +K   L++ +AI+  F ++    +A+  F   +  G++PN VT ++++ G 
Sbjct: 313 EDAAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGF 372

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
                      IH L  + GL    ++ N+++++Y      D A  +F ++E  ++ISW 
Sbjct: 373 TTPSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWN 432

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+G++V  E   DAL++FR M++  I  D V  + ++    I    +  K +H  V   
Sbjct: 433 SMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGACTIGSHGRTRKLVHQCVEES 492

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           GL     +  S++ MY+K G+LD +  +  ++ E+ + +W  +I+GY  +G +REAL  +
Sbjct: 493 GLGGSPLVQTSLVNMYAKAGELDVAEVILQEMDEQQITAWNVLINGYALHGRSREALEAY 552

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            K++ E    VD +T +S+L A     +L     +H  A E G      V+N L + YSK
Sbjct: 553 QKLQLEAI-PVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSK 611

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CG+++ A  +F+ M  +R  VSWN ++  Y  +G  E  L L  KM + G   +  T++S
Sbjct: 612 CGSMENARRIFDSMP-IRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVS 670

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           +L++C HAGL  +G   F+ +  +  ++   EHYGC+VDLL RAG L +A     K+   
Sbjct: 671 VLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPLE 730

Query: 521 MGPNIWRALLSGCVLHV---------------------------------GRFQDAEALR 547
            G   W +LL  C +                                   G +++A  LR
Sbjct: 731 PGIVTWASLLGACRVQKDLDRGKLAAGKLLELDPGNSSASVVLSNIYSERGDWKNAAKLR 790

Query: 548 SGSQKKGIIKIPGIS 562
                + + K+PGIS
Sbjct: 791 RAMASRRVKKVPGIS 805



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 152/581 (26%), Positives = 282/581 (48%), Gaps = 34/581 (5%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTM 74
           Y + G + +A   F +I  +NVVSW+++I  YS     ++++  F  M+L G+ PN+ T+
Sbjct: 2   YSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAITL 61

Query: 75  VGVLVAAAGLQNLELARSIHGLMVKFGL----------------------ESDLFEGLKN 112
           V VL +    + L     +H L ++ G                          +FE +  
Sbjct: 62  VAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMAE 121

Query: 113 PYLVSCNAIVAGF-INNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCEL 171
             +V+ NA++  + +    ++ AV LF      G+  N +T L V+   V   +    + 
Sbjct: 122 KNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGKF 181

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           IH    +    LDV VN ++++ Y+    L  A ++F  M C+ V +W  M+  +   E 
Sbjct: 182 IHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISER 241

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
           +G+A  IF+ M++    CD V  L+++        L+ GK +   +     + +L +  +
Sbjct: 242 SGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESISETSFELDLFVGTA 301

Query: 292 IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
           +I MY++C   + +  VF ++ + +L++W+AII+ +  +G   EAL  F  M+QE     
Sbjct: 302 LITMYARCRSPEDAAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQEGILP- 360

Query: 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVF 411
           + +T +S+L      + LE   ++H +  E G     +++N L++ Y +C + D A  VF
Sbjct: 361 NRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDARTVF 420

Query: 412 EEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC--GHAG 469
           +++  L +++SWN++I  Y      + AL L+  M + G  PD   +++IL AC  G  G
Sbjct: 421 DQLE-LPNLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGACTIGSHG 479

Query: 470 LTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRAL 529
            T     + +Q +EE+ +  S      +V++ A+AG L D + +  + ++      W  L
Sbjct: 480 RTRK---LVHQCVEESGLGGSPLVQTSLVNMYAKAGEL-DVAEVILQEMDEQQITAWNVL 535

Query: 530 LSGCVLHVGRFQDAEALRSGSQKKGII--KIPGISFLNSTS 568
           ++G  LH GR ++A       Q + I   K+  IS LN+ +
Sbjct: 536 INGYALH-GRSREALEAYQKLQLEAIPVDKVTFISVLNACT 575



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 129/506 (25%), Positives = 255/506 (50%), Gaps = 39/506 (7%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEK-SMKAFSHMMLSG 66
           ++ LL+ Y K G + +A+++F+E+ EKNVV+W+ ++  YS+ G   K +++ F+ M+L G
Sbjct: 96  ATALLNMYGKCGTLLDAQSVFEEMAEKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEG 155

Query: 67  LLPNSFTMVGVLVAAAGLQNLELARSIHGLM-------------------VKFGLESD-- 105
           +  N  T + VL +      L   + IH  +                    K G  +D  
Sbjct: 156 VKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDAR 215

Query: 106 -LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
            +F+G+    + + N++++ +  ++   +A  +F   +  G   + VT L+++  CV   
Sbjct: 216 KVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPE 275

Query: 165 SRALCELIHGLTIK-----LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           +     L HG  ++         LD+ V  +++ MY+     + A Q+F  M+  ++I+W
Sbjct: 276 T-----LQHGKHVRESISETSFELDLFVGTALITMYARCRSPEDAAQVFGRMKQTNLITW 330

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           + ++  F D  + G+AL+ FR M++  I+ + V  ++L++       L+   ++H  +  
Sbjct: 331 SAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITE 390

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            GL     + N+++ +Y +C   D +R+VF+Q+   +L+SW ++I  YVQ     +AL  
Sbjct: 391 HGLDDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWNSMIGIYVQCERHDDALQL 450

Query: 340 FIKMRQE--KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
           F  M+Q+  + D V+ +T++   T        ++   +H    E+G      VQ  L++ 
Sbjct: 451 FRTMQQQGIQPDRVNFMTILGACTIGSHGRTRKL---VHQCVEESGLGGSPLVQTSLVNM 507

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           Y+K G +D+A ++ +EM   + + +WN +I GY ++G    AL  Y K+       D  T
Sbjct: 508 YAKAGELDVAEVILQEMD-EQQITAWNVLINGYALHGRSREALEAYQKLQLEAIPVDKVT 566

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIE 483
           ++S+LNAC  +    +G +I +  +E
Sbjct: 567 FISVLNACTSSTSLAEGKMIHSNAVE 592



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 96/375 (25%), Positives = 184/375 (49%), Gaps = 8/375 (2%)

Query: 194 MYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVA 253
           MYS    L  A+  F ++  ++V+SW  M+  +  ++   +AL +F  M    +  + + 
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAIT 60

Query: 254 LLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT 313
           L+ +++      +L+ G  +HA  +  G      ++ +++ MY KCG L  ++SVF ++ 
Sbjct: 61  LVAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMA 120

Query: 314 EKSLVSWTAIISGYVQNGCA-REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEIC 372
           EK++V+W A++  Y   GC  + A+  F +M  E   + + IT +++L +  +  AL   
Sbjct: 121 EKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKA-NVITFLNVLNSVVDPDALRKG 179

Query: 373 LQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGV 432
             +H    E+       V   L+++Y+KCG++  A  VF+ M   R V +WN++I  Y +
Sbjct: 180 KFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMP-CRSVGTWNSMISAYSI 238

Query: 433 NGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQE 492
           +     A  ++ +M + GE  D  T+LSIL+AC +      G  +  + I E   +    
Sbjct: 239 SERSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHV-RESISETSFELDLF 297

Query: 493 HYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQK 552
               ++ + AR     DA+ + G++ +      W A+++    H G   +A       Q+
Sbjct: 298 VGTALITMYARCRSPEDAAQVFGRMKQ-TNLITWSAIITAFADH-GHCGEALRYFRMMQQ 355

Query: 553 KGII--KIPGISFLN 565
           +GI+  ++  IS LN
Sbjct: 356 EGILPNRVTFISLLN 370


>gi|449471512|ref|XP_004153331.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 607

 Score =  260 bits (664), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 173/568 (30%), Positives = 276/568 (48%), Gaps = 75/568 (13%)

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAI 121
           M+   + P+  T   VL + +   N+   R+IHG +VK G   DLF+       V   A+
Sbjct: 1   MVAKSMHPDEETYPFVLRSCSSFSNVGFGRTIHGYLVKLGF--DLFD-------VVATAL 51

Query: 122 VAGFINNKLFQQAVLLFN-------------------------FFRGSG------LVPNA 150
              +     F+ A  LF+                          FR  G      LVP++
Sbjct: 52  AEMYEECIEFENAHQLFDKRSVKDLGWPSSLTTEGPQNDNGEGIFRVFGRMIAEQLVPDS 111

Query: 151 VTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFRE 210
            T   ++R    L S  L +++H + I   L  D+ VN +VL +YS L  L  A ++F +
Sbjct: 112 FTFFNLLRFIAGLNSIQLAKIVHCIAIVSKLSGDLLVNTAVLSLYSKLRSLVDARKLFDK 171

Query: 211 MECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG 270
           M  KD + W  M+  +       + L++F+ M +S I  D    L +IS  A L  +  G
Sbjct: 172 MPEKDRVVWNIMIAAYAREGKPTECLELFKSMARSGIRSDLFTALPVISSIAQLKCVDWG 231

Query: 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
           KQ HA ++  G  S++ + NS+I MY +C  LDS+  +FN +T+KS++SW+A+I GYV+N
Sbjct: 232 KQTHAHILRNGSDSQVSVHNSLIDMYCECKILDSACKIFNWMTDKSVISWSAMIKGYVKN 291

Query: 331 GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV 390
           G +  AL+ F KM+ +   + D + +++IL A   + ALE    LHG + + G     S+
Sbjct: 292 GQSLTALSLFSKMKSDGIQA-DFVIMINILPAFVHIGALENVKYLHGYSMKLGLTSLPSL 350

Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGF-LRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
              L+ +Y+KCG++++A  +FEE     +D++ WN++I  +  +G       LY++M  +
Sbjct: 351 NTALLITYAKCGSIEMAQRLFEEEKIDDKDLIMWNSMISAHANHGDWSQCFKLYNRMKCS 410

Query: 450 GEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSD 509
              PD  T+L +L AC ++GL   G   F +M E    +PSQEHY C+V+LL RAG +S+
Sbjct: 411 NSKPDQVTFLGLLTACVNSGLVEKGKEFFKEMTESYGCQPSQEHYACMVNLLGRAGLISE 470

Query: 510 ASGLAGKLLEGMGPNIWRALLSGCVLH--------------------------------- 536
           A  L   +       +W  LLS C +H                                 
Sbjct: 471 AGELVKNMPIKPDARVWGPLLSACKMHPGSKLAEFAAEKLINMEPRNAGNYILLSNIYAA 530

Query: 537 VGRFQDAEALRSGSQKKGIIKIPGISFL 564
            G++     +RS  + KG+ KIPG S+L
Sbjct: 531 AGKWDGVAKMRSFLRNKGLKKIPGCSWL 558



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 100/381 (26%), Positives = 177/381 (46%), Gaps = 29/381 (7%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSW--SIVIHGYSINGFHEKSMKAFSHMMLS 65
           ++ L   Y +  + + A  LFD+   K++  W  S+   G   N   E   + F  M+  
Sbjct: 48  ATALAEMYEECIEFENAHQLFDKRSVKDL-GWPSSLTTEGPQ-NDNGEGIFRVFGRMIAE 105

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL------------------- 106
            L+P+SFT   +L   AGL +++LA+ +H + +   L  DL                   
Sbjct: 106 QLVPDSFTFFNLLRFIAGLNSIQLAKIVHCIAIVSKLSGDLLVNTAVLSLYSKLRSLVDA 165

Query: 107 ---FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
              F+ +     V  N ++A +       + + LF     SG+  +  T L VI     L
Sbjct: 166 RKLFDKMPEKDRVVWNIMIAAYAREGKPTECLELFKSMARSGIRSDLFTALPVISSIAQL 225

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
                 +  H   ++ G    VSV+NS++DMY     LD+A +IF  M  K VISW+ M+
Sbjct: 226 KCVDWGKQTHAHILRNGSDSQVSVHNSLIDMYCECKILDSACKIFNWMTDKSVISWSAMI 285

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
             +V    +  AL +F +M+   I  D V ++N++     +G L+  K LH   +  GL 
Sbjct: 286 KGYVKNGQSLTALSLFSKMKSDGIQADFVIMINILPAFVHIGALENVKYLHGYSMKLGLT 345

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQ--ITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           S   L+ +++  Y+KCG ++ ++ +F +  I +K L+ W ++IS +  +G   +    + 
Sbjct: 346 SLPSLNTALLITYAKCGSIEMAQRLFEEEKIDDKDLIMWNSMISAHANHGDWSQCFKLYN 405

Query: 342 KMRQEKTDSVDSITLVSILTA 362
           +M+   +   D +T + +LTA
Sbjct: 406 RMKCSNSKP-DQVTFLGLLTA 425


>gi|297814636|ref|XP_002875201.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297814638|ref|XP_002875202.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321039|gb|EFH51460.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321040|gb|EFH51461.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 708

 Score =  260 bits (664), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 169/615 (27%), Positives = 307/615 (49%), Gaps = 59/615 (9%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++KL+S Y   G  K+A  +FD+IPE +   W +++  Y +N    + +K +  +M  G 
Sbjct: 91  ATKLVSLYGSFGYTKDARLVFDQIPEPDFYLWKVILRCYCLNNESFEVIKFYDLLMKHGF 150

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKF-GLESDLFEGLKNPY------------ 114
             +       L A   +Q+L+  + IH  +VK    ++ +  GL + Y            
Sbjct: 151 GYDDIVFSKALKACTEVQDLDNGKKIHCQIVKVPSFDNVVLTGLLDMYAKCGEIKSSYKV 210

Query: 115 --------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
                   +V   +++AG++ N L+++ ++LFN  R + ++ N  T  T++  C  L + 
Sbjct: 211 FEDITLRNVVCWTSMIAGYVKNDLYEEGLVLFNRMRENSVLGNEYTYGTLVMACTKLRAL 270

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
              +  HG  IK G+ L   +  S+LDMY    D+  A ++F E    D++ WT M+  +
Sbjct: 271 HQGKWFHGCLIKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGY 330

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
                  +AL +F++M    I  + V + +++S   ++G+L+ G+ +H   +  G+  + 
Sbjct: 331 THNGSVNEALSLFQKMSGVGIKPNCVTIASVLSGCGLVGNLELGRSIHGLSIKVGIW-DT 389

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            ++N+++ MY+KC     ++ VF   +EK +V+W +IISG+ QNG   EAL  F +M  E
Sbjct: 390 NVANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNTE 449

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ--NCLISSYSKCGNV 404
                + +T+ S+ +A   L +L I   LH  + + GF    SV     L+  Y+KCG+ 
Sbjct: 450 SV-MPNGVTVASLFSACASLGSLAIGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDA 508

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           + A ++F+ +   ++ ++W+ +I GYG  G  + +L L+ +M +  + P+ ST+ S+L+A
Sbjct: 509 ESARLIFDTIE-EKNTITWSAMIGGYGKQGDTKGSLELFEEMLKKQQKPNESTFTSVLSA 567

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C H G+ N+G   F+ M ++    PS +HY C+VD+LARAG L  A  +  K+       
Sbjct: 568 CSHTGMVNEGKKYFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQPDVR 627

Query: 525 IWRALLSGCVLHV---------------------------------GRFQDAEALRSGSQ 551
            + A L GC +H                                  GR+  A+ +R+  +
Sbjct: 628 CFGAFLHGCGMHSRFDLGEIVIKKMLDLHPDDASYYVLVSNLYASDGRWSQAKEVRNLMK 687

Query: 552 KKGIIKIPGISFLNS 566
           ++G+ KI G S + S
Sbjct: 688 QRGLSKIAGHSIMES 702



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 139/484 (28%), Positives = 242/484 (50%), Gaps = 31/484 (6%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  D    + LL  Y K G+IK +  +F++I  +NVV W+ +I GY  N  +E+ +  F+
Sbjct: 184 PSFDNVVLTGLLDMYAKCGEIKSSYKVFEDITLRNVVCWTSMIAGYVKNDLYEEGLVLFN 243

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE--SDLFEGLKNPY---- 114
            M  + +L N +T   +++A   L+ L   +  HG ++K G+E  S L   L + Y    
Sbjct: 244 RMRENSVLGNEYTYGTLVMACTKLRALHQGKWFHGCLIKSGIELSSCLVTSLLDMYVKCG 303

Query: 115 ----------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                           LV   A++ G+ +N    +A+ LF    G G+ PN VT+ +V+ 
Sbjct: 304 DISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMSGVGIKPNCVTIASVLS 363

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYS-CLMDLDAAIQIFREMECKDVI 217
           GC  +G+  L   IHGL+IK+G I D +V N+++ MY+ C  + DA      E E KD++
Sbjct: 364 GCGLVGNLELGRSIHGLSIKVG-IWDTNVANALVHMYAKCYQNRDAKYVFEMESE-KDIV 421

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA-Q 276
           +W  ++  F       +AL +F  M    ++ + V + +L S  A LG L  G  LHA  
Sbjct: 422 AWNSIISGFSQNGSIHEALFLFHRMNTESVMPNGVTVASLFSACASLGSLAIGSSLHAYS 481

Query: 277 VVLGGL-QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
           V LG L  S + +  +++  Y+KCGD +S+R +F+ I EK+ ++W+A+I GY + G  + 
Sbjct: 482 VKLGFLASSSVHVGTALLDFYAKCGDAESARLIFDTIEEKNTITWSAMIGGYGKQGDTKG 541

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAAL-EICLQLHGIAFEAGFPRYRSVQNCL 394
           +L  F +M +++    +S T  S+L+A      + E       +  +  F        C+
Sbjct: 542 SLELFEEMLKKQQKPNES-TFTSVLSACSHTGMVNEGKKYFSSMYKDYNFTPSTKHYTCM 600

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           +   ++ G ++ A  + E+M    DV  +   ++G G++   +    +  KM +    PD
Sbjct: 601 VDMLARAGELEQALDIIEKMPIQPDVRCFGAFLHGCGMHSRFDLGEIVIKKMLDLH--PD 658

Query: 455 SSTY 458
            ++Y
Sbjct: 659 DASY 662



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 122/463 (26%), Positives = 224/463 (48%), Gaps = 13/463 (2%)

Query: 76  GVLVAAAGLQNLELARSIHGLMVKFGLESD---LFEGLKNPYLVSCNAIVAGF-INNKLF 131
           GVL     + ++ +A  +  L   FG   D   +F+ +  P       I+  + +NN+ F
Sbjct: 77  GVLTGNGLMGDISIATKLVSLYGSFGYTKDARLVFDQIPEPDFYLWKVILRCYCLNNESF 136

Query: 132 QQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSV 191
           +  +  ++     G   + +     ++ C  +      + IH   +K+    D  V   +
Sbjct: 137 E-VIKFYDLLMKHGFGYDDIVFSKALKACTEVQDLDNGKKIHCQIVKVP-SFDNVVLTGL 194

Query: 192 LDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDT 251
           LDMY+   ++ ++ ++F ++  ++V+ WT M+  +V  +   + L +F  MR++ ++ + 
Sbjct: 195 LDMYAKCGEIKSSYKVFEDITLRNVVCWTSMIAGYVKNDLYEEGLVLFNRMRENSVLGNE 254

Query: 252 VALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQ 311
                L+     L  L +GK  H  ++  G++    L  S++ MY KCGD+ ++R VFN+
Sbjct: 255 YTYGTLVMACTKLRALHQGKWFHGCLIKSGIELSSCLVTSLLDMYVKCGDISNARRVFNE 314

Query: 312 ITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEI 371
            +   LV WTA+I GY  NG   EAL+ F KM        + +T+ S+L+  G +  LE+
Sbjct: 315 HSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMSGVGIKP-NCVTIASVLSGCGLVGNLEL 373

Query: 372 CLQLHGIAFEAGFPRYRSVQNCLISSYSKC-GNVDLAYIVFEEMGFLRDVVSWNTIIYGY 430
              +HG++ + G     +V N L+  Y+KC  N D  Y+   EM   +D+V+WN+II G+
Sbjct: 374 GRSIHGLSIKVGIWD-TNVANALVHMYAKCYQNRDAKYVF--EMESEKDIVAWNSIISGF 430

Query: 431 GVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPS 490
             NG    AL L+H+M     +P+  T  S+ +AC   G    G  +    ++   +  S
Sbjct: 431 SQNGSIHEALFLFHRMNTESVMPNGVTVASLFSACASLGSLAIGSSLHAYSVKLGFLASS 490

Query: 491 QEHYG-CVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSG 532
             H G  ++D  A+ G  ++++ L    +E      W A++ G
Sbjct: 491 SVHVGTALLDFYAKCG-DAESARLIFDTIEEKNTITWSAMIGG 532



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 147/299 (49%), Gaps = 7/299 (2%)

Query: 173 HGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYA 232
           HG+    GL+ D+S+   ++ +Y        A  +F ++   D   W  ++  +     +
Sbjct: 76  HGVLTGNGLMGDISIATKLVSLYGSFGYTKDARLVFDQIPEPDFYLWKVILRCYCLNNES 135

Query: 233 GDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSI 292
            + +K +  + K     D +     +     + DL  GK++H Q+V       + L+  +
Sbjct: 136 FEVIKFYDLLMKHGFGYDDIVFSKALKACTEVQDLDNGKKIHCQIVKVPSFDNVVLTG-L 194

Query: 293 IAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV- 351
           + MY+KCG++ SS  VF  IT +++V WT++I+GYV+N    E L  F +MR+   +SV 
Sbjct: 195 LDMYAKCGEIKSSYKVFEDITLRNVVCWTSMIAGYVKNDLYEEGLVLFNRMRE---NSVL 251

Query: 352 -DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIV 410
            +  T  +++ A  +L AL      HG   ++G      +   L+  Y KCG++  A  V
Sbjct: 252 GNEYTYGTLVMACTKLRALHQGKWFHGCLIKSGIELSSCLVTSLLDMYVKCGDISNARRV 311

Query: 411 FEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAG 469
           F E   + D+V W  +I GY  NG    AL+L+ KM+  G  P+  T  S+L+ CG  G
Sbjct: 312 FNEHSHV-DLVMWTAMIVGYTHNGSVNEALSLFQKMSGVGIKPNCVTIASVLSGCGLVG 369



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 96/196 (48%), Gaps = 5/196 (2%)

Query: 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
           +Q H  +   GL  ++ ++  ++++Y   G    +R VF+QI E     W  I+  Y  N
Sbjct: 73  RQAHGVLTGNGLMGDISIATKLVSLYGSFGYTKDARLVFDQIPEPDFYLWKVILRCYCLN 132

Query: 331 GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV 390
             + E + +F  +  +     D I     L A  E+  L+   ++H    +   P + +V
Sbjct: 133 NESFEVI-KFYDLLMKHGFGYDDIVFSKALKACTEVQDLDNGKKIHCQIVKV--PSFDNV 189

Query: 391 Q-NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
               L+  Y+KCG +  +Y VFE++  LR+VV W ++I GY  N   E  L L+++M E 
Sbjct: 190 VLTGLLDMYAKCGEIKSSYKVFEDIT-LRNVVCWTSMIAGYVKNDLYEEGLVLFNRMREN 248

Query: 450 GEVPDSSTYLSILNAC 465
             + +  TY +++ AC
Sbjct: 249 SVLGNEYTYGTLVMAC 264


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  260 bits (664), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 157/551 (28%), Positives = 283/551 (51%), Gaps = 25/551 (4%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPE-KNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSG 66
           ++ L+  Y K G +  A  +F+ + + ++V SW+  I G   NG   +++  F  M   G
Sbjct: 201 ANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQNGMFLEALDLFRRMQSDG 260

Query: 67  LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL-------------------- 106
              NS+T VGVL   A L  L   R +H  ++K G E ++                    
Sbjct: 261 FSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTEFNIQCNALLVMYARCGWVDSALR 320

Query: 107 -FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
            F  + +   +S N++++ ++ N+L+ +A+  F     +G  P+   +++++     LG 
Sbjct: 321 VFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGR 380

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
                 +H   +K  L  D+ + N+++DMY     ++ + ++F  M  KD +SWT ++  
Sbjct: 381 LINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIAC 440

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +       +A+  FR  +K  I  D + + +++   + L  +   KQ+H+  +  GL  +
Sbjct: 441 YAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVHSYAIRNGLL-D 499

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           L L N II +Y +CG++  + ++F  + +K +V+WT++++ + +NG   EA+  F KM  
Sbjct: 500 LILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKMLN 559

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
                 DS+ LV IL A   L++L    ++HG      FP   +V + L+  YS CG+++
Sbjct: 560 AGIQP-DSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAVVSSLVDMYSGCGSMN 618

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            A  VF+E    +DVV W  +I   G++GHG+ A+ ++ +M ETG  PD  ++L++L AC
Sbjct: 619 YALKVFDEAK-CKDVVLWTAMINATGMHGHGKQAIYIFKRMLETGVSPDHVSFLALLYAC 677

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI 525
            H+ L ++G    + M+ + K++P QEHY CVVDLL R+G   +A      +       +
Sbjct: 678 SHSKLVDEGKFYLDMMVSKYKLQPWQEHYACVVDLLGRSGQTEEAYKFIKSMPLEPKSVV 737

Query: 526 WRALLSGCVLH 536
           W ALL  C +H
Sbjct: 738 WCALLGACRIH 748



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 144/492 (29%), Positives = 249/492 (50%), Gaps = 33/492 (6%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS-- 65
           ++KLL  Y K G++ +A  LFD +P + V SW+ +I     +G   +++  +  M  S  
Sbjct: 96  ATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEP 155

Query: 66  --GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
             G  P+  T+  VL A     +      +HGL VK GL+                    
Sbjct: 156 VAGAAPDGCTLASVLKACGAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLD 215

Query: 106 ----LFEGLKNPY-LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
               +FE +++   + S N+ ++G + N +F +A+ LF   +  G   N+ T + V++ C
Sbjct: 216 SALRVFEWMRDGRDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVC 275

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             L        +H   +K G   ++  N ++L MY+    +D+A+++FRE+  KD ISW 
Sbjct: 276 AELAQLNHGRELHAALLKCGTEFNIQCN-ALLVMYARCGWVDSALRVFREIGDKDYISWN 334

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+  +V      +A+  F EM ++    D   +++L+S    LG L  G+++HA  V  
Sbjct: 335 SMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGREVHAYAVKQ 394

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
            L S+L+++N+++ MY KC  ++ S  VF+++  K  VSWT II+ Y Q+    EA+ +F
Sbjct: 395 RLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQSSRYSEAIGKF 454

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            +  Q++   VD + + SIL A   L ++ +  Q+H  A   G      ++N +I  Y +
Sbjct: 455 -RTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVHSYAIRNGLLDL-ILKNRIIDIYGE 512

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CG V  A  +FE +   +D+V+W +++  +  NG    A+AL+ KM   G  PDS   + 
Sbjct: 513 CGEVCYALNIFEMLD-KKDIVTWTSMVNCFAENGLLHEAVALFGKMLNAGIQPDSVALVG 571

Query: 461 ILNACGHAGLTN 472
           IL A   AGL++
Sbjct: 572 ILGAI--AGLSS 581



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 121/497 (24%), Positives = 235/497 (47%), Gaps = 26/497 (5%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           LL  Y + G +  A  +F EI +K+ +SW+ ++  Y  N  + +++  F  M+ +G  P+
Sbjct: 305 LLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPD 364

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------------FE 108
              +V +L A   L  L   R +H   VK  L+SDL                      F+
Sbjct: 365 HACIVSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFD 424

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            ++    VS   I+A +  +  + +A+  F   +  G+  + + M +++  C  L S +L
Sbjct: 425 RMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISL 484

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
            + +H   I+ GL LD+ + N ++D+Y    ++  A+ IF  ++ KD+++WT M+  F +
Sbjct: 485 LKQVHSYAIRNGL-LDLILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAE 543

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
                +A+ +F +M  + I  D+VAL+ ++   A L  L +GK++H  ++ G    E  +
Sbjct: 544 NGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAV 603

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
            +S++ MYS CG ++ +  VF++   K +V WTA+I+    +G  ++A+  F +M  E  
Sbjct: 604 VSSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTAMINATGMHGHGKQAIYIFKRM-LETG 662

Query: 349 DSVDSITLVSILTASGELAAL-EICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
            S D ++ +++L A      + E    L  +  +     ++    C++    + G  + A
Sbjct: 663 VSPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKLQPWQEHYACVVDLLGRSGQTEEA 722

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
           Y   + M      V W  ++    ++ + E A+    K+ E  E  +   Y+ + N    
Sbjct: 723 YKFIKSMPLEPKSVVWCALLGACRIHKNHELAMIATDKLLEL-EPDNPGNYVLVSNVFAE 781

Query: 468 AGLTNDGLVIFNQMIEE 484
            G  N+   I  +M E+
Sbjct: 782 MGKWNNVKEIRTKMTEQ 798



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 114/227 (50%), Gaps = 9/227 (3%)

Query: 254 LLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR---LSNSIIAMYSKCGDLDSSRSVFN 310
           +L+L++V   + +   G+QLHA  V  G   +     L+  ++ MY KCG L  +  +F+
Sbjct: 61  VLDLVAVRRAVSE---GRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAHRLFD 117

Query: 311 QITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT---DSVDSITLVSILTASGELA 367
            +  +++ SW A+I   + +G A EA+  +  MR  +     + D  TL S+L A G   
Sbjct: 118 GMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEG 177

Query: 368 ALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
                 ++HG+A ++G  R   V N L+  Y+KCG +D A  VFE M   RDV SWN+ I
Sbjct: 178 DGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAI 237

Query: 428 YGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDG 474
            G   NG    AL L+ +M   G   +S T + +L  C      N G
Sbjct: 238 SGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHG 284


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  260 bits (664), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 175/577 (30%), Positives = 281/577 (48%), Gaps = 34/577 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEI----PEKNVVSWSIVIHGYSINGFHEKSMKAF 59
           D + ++ L++ Y   G + EA  +FDE      E+N VSW+ +I  Y  N     ++  F
Sbjct: 134 DVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVF 193

Query: 60  SHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF------------ 107
             M+ SG  PN F    V+ A  G ++LE  R +HG +V+ G E D+F            
Sbjct: 194 REMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKL 253

Query: 108 ----------EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
                     E +    +VS NA ++G + +    +A+ L    + SGLVPN  T+ +V+
Sbjct: 254 GDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVL 313

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
           + C   G+  L   IHG  +K     D  V   ++DMY+    LD A ++F  M  +D+I
Sbjct: 314 KACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLI 373

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDT--VALLNLISVNAILGDLKRGKQLHA 275
            W  ++         G+ L +F  MRK  +  D     L +++   A    +   +Q+HA
Sbjct: 374 LWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICHTRQVHA 433

Query: 276 QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
                GL S+  + N +I  Y KCG LD +  VF +     ++S T +++   Q     +
Sbjct: 434 LAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDIISSTTMMTALSQCDHGED 493

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLI 395
           A+  F++M ++  +  DS  L S+L A   L+A E   Q+H    +  F       N L+
Sbjct: 494 AIKLFVQMLRKGLEP-DSFVLSSLLNACTSLSAYEQGKQVHAHLIKRQFTSDVFAGNALV 552

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
            +Y+KCG+++ A + F  +   R +VSW+ +I G   +GHG+ AL L+H+M + G  P+ 
Sbjct: 553 YAYAKCGSIEDADMAFSGLP-ERGIVSWSAMIGGLAQHGHGKRALDLFHRMLDEGVAPNH 611

Query: 456 STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAG 515
            T  S+L+AC HAGL +D    F  M E   +  ++EHY C++D+L RAG L DA  L  
Sbjct: 612 ITLTSVLSACNHAGLVDDAKKYFESMKETFGIDRTEEHYACMIDILGRAGKLEDAMELVN 671

Query: 516 KLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQK 552
            +       +W ALL    +H    +D E  R  ++K
Sbjct: 672 NMPFQANAAVWGALLGASRVH----RDPELGRMAAEK 704



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 162/559 (28%), Positives = 257/559 (45%), Gaps = 39/559 (6%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ LL+ Y +      A  +FDEIP+   VSWS ++  YS NG    ++ AF  M   G+
Sbjct: 40  SNHLLTLYSRCRLPSAARAVFDEIPDPCHVSWSSLVTAYSNNGMPRDALLAFRAMRGRGV 99

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF------------------EG 109
             N F +  VL  A    ++     +H L V   L  D+F                    
Sbjct: 100 PCNEFALPVVLKCAP---DVRFGAQVHALAVATRLVHDVFVANALVAVYGGFGMVDEARR 156

Query: 110 LKNPYL--------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
           + + Y+        VS N +++ ++ N     A+ +F     SG  PN      V+  C 
Sbjct: 157 MFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACT 216

Query: 162 ALGSRAL--CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
             GSR L     +HG  ++ G   DV   N+++DMYS L D++ A  +F +M   DV+SW
Sbjct: 217 --GSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSW 274

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
              +   V   +   AL++  +M+ S ++ +   L +++   A  G    G+Q+H  +V 
Sbjct: 275 NAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVK 334

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
                +  ++  ++ MY+K G LD +R VF+ +  + L+ W A+ISG   +G   E L+ 
Sbjct: 335 AVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSL 394

Query: 340 FIKMRQEKTD-SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
           F +MR+E  D  V+  TL S+L ++    A+    Q+H +A + G      V N LI SY
Sbjct: 395 FHRMRKEGLDLDVNRTTLASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSY 454

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
            KCG +D A  VF+E     D++S  T++       HGE A+ L+ +M   G  PDS   
Sbjct: 455 WKCGQLDYAIKVFKE-SRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVL 513

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYG-CVVDLLARAGCLSDASGLAGKL 517
            S+LNAC        G  +   +I+      S    G  +V   A+ G + DA  +A   
Sbjct: 514 SSLLNACTSLSAYEQGKQVHAHLIKRQFT--SDVFAGNALVYAYAKCGSIEDAD-MAFSG 570

Query: 518 LEGMGPNIWRALLSGCVLH 536
           L   G   W A++ G   H
Sbjct: 571 LPERGIVSWSAMIGGLAQH 589



 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 143/512 (27%), Positives = 250/512 (48%), Gaps = 32/512 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + ++ L+  Y K G I+ A  +F+++P  +VVSW+  I G   +G   ++++    M 
Sbjct: 239 DVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMK 298

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFE--GLKNPY------- 114
            SGL+PN FT+  VL A AG     L R IHG MVK   + D F   GL + Y       
Sbjct: 299 SSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLD 358

Query: 115 -------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLV--PNAVTMLTVIRG 159
                        L+  NA+++G  ++    + + LF+  R  GL    N  T+ +V++ 
Sbjct: 359 DARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKS 418

Query: 160 CVALGSRALCEL--IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
             +  S A+C    +H L  K+GL+ D  V N ++D Y     LD AI++F+E    D+I
Sbjct: 419 TAS--SEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDII 476

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           S T MM      ++  DA+K+F +M +  +  D+  L +L++    L   ++GKQ+HA +
Sbjct: 477 SSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHL 536

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           +     S++   N+++  Y+KCG ++ +   F+ + E+ +VSW+A+I G  Q+G  + AL
Sbjct: 537 IKRQFTSDVFAGNALVYAYAKCGSIEDADMAFSGLPERGIVSWSAMIGGLAQHGHGKRAL 596

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEA-GFPRYRSVQNCLIS 396
           + F +M  E   + + ITL S+L+A      ++   +      E  G  R      C+I 
Sbjct: 597 DLFHRMLDEGV-APNHITLTSVLSACNHAGLVDDAKKYFESMKETFGIDRTEEHYACMID 655

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
              + G ++ A  +   M F  +   W  ++    V+   E       K+  T E   S 
Sbjct: 656 ILGRAGKLEDAMELVNNMPFQANAAVWGALLGASRVHRDPELGRMAAEKLF-TLEPEKSG 714

Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVK 488
           T++ + N    AG+  D +    ++++++ VK
Sbjct: 715 THVLLANTYASAGMW-DEMAKVRKLMKDSNVK 745


>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
 gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
          Length = 782

 Score =  260 bits (664), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 159/550 (28%), Positives = 284/550 (51%), Gaps = 27/550 (4%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+  Y + G + EA+ +F+ +  K+V +W+ +I  Y   G +++++  F  M    ++P 
Sbjct: 46  LIQMYAQCGSVPEAQQVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPT 105

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--------------------- 109
             T V +L A A  ++L+    IHG +++ G E D+F G                     
Sbjct: 106 KVTYVAILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFK 165

Query: 110 -LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            L++  +VS  A++A  + +  F  A  L+   +  G+VPN +T+ TV          + 
Sbjct: 166 RLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSE 225

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
            + I+ L     +  DV V NS ++M+     L  A ++F +M  +DV++W  ++  +V 
Sbjct: 226 GKFIYSLVSSRVMESDVRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQ 285

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
            E  G+A+++F  +++  I  + +  + +++V   L  L +GK +H  V   G   ++ +
Sbjct: 286 NENFGEAVRLFGRLQQDGIKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDVVV 345

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
           + +++++Y +C     +  +F  +  K +++WT +   Y QNG  +EAL  F +M+ E  
Sbjct: 346 ATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGR 405

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
               S TLV++L     LAAL+   Q+H    E GF     V+  LI+ Y KCG +  A 
Sbjct: 406 RPT-SATLVAVLDTCAHLAALQKGRQIHSHIIENGFRMEMVVETALINMYGKCGKMAEAR 464

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
            VFE+M   RD++ WN+++  Y  +G+ +  L L+++M   GE  D+ +++S+L+A  H+
Sbjct: 465 SVFEKMA-KRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGEKADAVSFVSVLSALSHS 523

Query: 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN--IW 526
           G   DG   F  M+++  + P+ E YGCVVDLL RAG + +A  +  K L G  P+  +W
Sbjct: 524 GSVTDGYQYFVAMLQDFSITPTPELYGCVVDLLGRAGRIQEAVDIVLK-LSGCLPDGILW 582

Query: 527 RALLSGCVLH 536
             LL  C  H
Sbjct: 583 MTLLGACRTH 592



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 122/522 (23%), Positives = 243/522 (46%), Gaps = 28/522 (5%)

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------L 106
           P++   V +L   +  +N++  R +H  +   G E +                      +
Sbjct: 3   PDTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQQV 62

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           FE L+   + +   ++  +     + +A+ +F   +   ++P  VT + ++  C +  S 
Sbjct: 63  FEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESL 122

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
                IHG  ++ G   DV V  ++++MY+    +  A   F+ +E +DV+SWT M+   
Sbjct: 123 KDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAAC 182

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
           V  +    A  ++R M+   ++ + + L  + +       L  GK +++ V    ++S++
Sbjct: 183 VQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRVMESDV 242

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
           R+ NS + M+   G L  +R +F  + ++ +V+W  +I+ YVQN    EA+  F +++Q+
Sbjct: 243 RVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQD 302

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
              + D IT V +L     L +L     +H +  EAG+ R   V   L+S Y +C     
Sbjct: 303 GIKAND-ITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRCEAPGQ 361

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           A+ +F +MG  +DV++W  +   Y  NG  + AL L+ +M   G  P S+T +++L+ C 
Sbjct: 362 AWKIFVDMG-SKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCA 420

Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIW 526
           H      G  I + +I EN  +        ++++  + G +++A  +  K+ +     +W
Sbjct: 421 HLAALQKGRQIHSHII-ENGFRMEMVVETALINMYGKCGKMAEARSVFEKMAK-RDILVW 478

Query: 527 RALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFLNSTS 568
            ++L     H G + +   L +  Q  G  K   +SF++  S
Sbjct: 479 NSMLGAYAQH-GYYDETLQLFNQMQLDG-EKADAVSFVSVLS 518



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 126/512 (24%), Positives = 239/512 (46%), Gaps = 33/512 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L++ Y K G ++ A + F  +  ++VVSW+ +I     +     +   +  M 
Sbjct: 140 DVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQ 199

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
           L G++PN  T+  V  A      L   + I+ L+    +ESD                  
Sbjct: 200 LDGVVPNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRVMESDVRVMNSAMNMFGNAGLLG 259

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               LFE + +  +V+ N ++  ++ N+ F +AV LF   +  G+  N +T + ++    
Sbjct: 260 DARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQDGIKANDITFVLMLNVYT 319

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
           +L S A  ++IH L  + G   DV V  +++ +Y        A +IF +M  KDVI+WT 
Sbjct: 320 SLTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTV 379

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M   +    +  +AL++F+EM+       +  L+ ++   A L  L++G+Q+H+ ++  G
Sbjct: 380 MCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENG 439

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
            + E+ +  ++I MY KCG +  +RSVF ++ ++ ++ W +++  Y Q+G   E L  F 
Sbjct: 440 FRMEMVVETALINMYGKCGKMAEARSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFN 499

Query: 342 KMR--QEKTDSVDSITLVSILTASGELAA--LEICLQLHGIAFEAGFPRYRSVQNCLISS 397
           +M+   EK D+V  ++++S L+ SG +          L   +       Y     C++  
Sbjct: 500 QMQLDGEKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPELY----GCVVDL 555

Query: 398 YSKCGNVDLAY-IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
             + G +  A  IV +  G L D + W T++     +   + A A   ++ E  +   S 
Sbjct: 556 LGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAKAAAEQVLER-DPSHSG 614

Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVK 488
            Y+ + N    AG   DG+    +++    VK
Sbjct: 615 AYVVLSNVYAAAG-DWDGVNRMRKLMRSRGVK 645


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  260 bits (664), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 182/609 (29%), Positives = 301/609 (49%), Gaps = 81/609 (13%)

Query: 5   PYNSSKLLSNYFKSGKIKEAENLFDEI-PEKNVVSWSIVIHGYSIN-GFHEKSMKAFSHM 62
           P++ + ++S Y       +A ++   + P  + V W   +   S++ GF E  ++ +  M
Sbjct: 77  PHDPTHIISMYLTFNSPAKALSVLRRLHPSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRM 136

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY------ 114
              G  P+ +T   VL A   + +     S+H ++   G E ++F   GL + Y      
Sbjct: 137 QRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAW 196

Query: 115 -----------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGS-GLVPNAVTMLTV 156
                            LVS N+IVA ++      +A+ +F       G+ P+AV+++ V
Sbjct: 197 ENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNV 256

Query: 157 IRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
           +  C ++G+ +  + +HG  ++ GL  DV V N+V+DMY+    ++ A ++F  M+ KDV
Sbjct: 257 LPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDV 316

Query: 217 ISWTRMMGLFVDFEYAGDALKIFREMRKSRI----------------------------- 247
           +SW  M+  +       DAL +F ++R+ +I                             
Sbjct: 317 VSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQ 376

Query: 248 --IC----DTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ-------SELRLSNSIIA 294
             +C    + V L++L+S  A  G L  GK+ H   +   L         +L + N++I 
Sbjct: 377 MLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALID 436

Query: 295 MYSKCGDLDSSRSVFNQITEK--SLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV- 351
           MYSKC    ++R++F+ I  K  S+V+WT +I G  Q+G A EAL  F +M Q     + 
Sbjct: 437 MYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMP 496

Query: 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS----VQNCLISSYSKCGNVDLA 407
           ++ T+   L A   L AL    Q+H         R+ S    V NCLI  YSK G+VD A
Sbjct: 497 NAFTISCALMACARLGALRFGRQIHAYVLRN---RFESAMLFVANCLIDMYSKSGDVDAA 553

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
            +VF+ M   R+ VSW +++ GYG++G GE AL ++++M +   VPD  T++ +L AC H
Sbjct: 554 RVVFDNM-HQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYACSH 612

Query: 468 AGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWR 527
           +G+ + G+  FN M ++  V P  EHY C+VDLL+RAG L +A  L   +     P +W 
Sbjct: 613 SGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWV 672

Query: 528 ALLSGCVLH 536
           ALLS C ++
Sbjct: 673 ALLSACRVY 681



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 100/367 (27%), Positives = 180/367 (49%), Gaps = 18/367 (4%)

Query: 155 TVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME-- 212
           T+   C +L S    EL H   +  GL  D +    ++ MY        A+ + R +   
Sbjct: 53  TLFHQCKSLAS---AELTHQQLLVQGLPHDPT---HIISMYLTFNSPAKALSVLRRLHPS 106

Query: 213 CKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQ 272
              V  W +++   V   +  D L+++R M++     D      ++     +   + G  
Sbjct: 107 SHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGAS 166

Query: 273 LHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK---SLVSWTAIISGYVQ 329
           +HA V   G +  + + N +++MY +CG  +++R VF+++ E+    LVSW +I++ Y+Q
Sbjct: 167 VHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQ 226

Query: 330 NGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS 389
            G +  A+  F +M ++     D+++LV++L A   + A     Q+HG A  +G      
Sbjct: 227 GGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVF 286

Query: 390 VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
           V N ++  Y+KCG ++ A  VFE M  ++DVVSWN ++ GY   G  + AL L+ K+ E 
Sbjct: 287 VGNAVVDMYAKCGMMEEANKVFERMK-VKDVVSWNAMVTGYSQIGRFDDALGLFEKIREE 345

Query: 450 GEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSD 509
               +  T+ +++      GL  + L +F QM+    +  S+ +   +V LL  +GC S 
Sbjct: 346 KIELNVVTWSAVIAGYAQRGLGFEALDVFRQML----LCGSEPNVVTLVSLL--SGCASA 399

Query: 510 ASGLAGK 516
            + L GK
Sbjct: 400 GTLLHGK 406



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 96/410 (23%), Positives = 177/410 (43%), Gaps = 56/410 (13%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEK----NVVSWSIVIHGYSINGFHEKSMKAF 59
           D  + + +++ Y + G+  +A  LF++I E+    NVV+WS VI GY+  G   +++  F
Sbjct: 315 DVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVF 374

Query: 60  SHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE---------------- 103
             M+L G  PN  T+V +L   A    L   +  H   +K+ L                 
Sbjct: 375 RQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINAL 434

Query: 104 SDLFEGLKNPY---------------LVSCNAIVAGFINN-------KLFQQAVLLFNFF 141
            D++   K+P                +V+   ++ G   +       +LF Q +   NF 
Sbjct: 435 IDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNF- 493

Query: 142 RGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGL-ILDVSVNNSVLDMYSCLMD 200
               ++PNA T+   +  C  LG+      IH   ++       + V N ++DMYS   D
Sbjct: 494 ----VMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGD 549

Query: 201 LDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISV 260
           +DAA  +F  M  ++ +SWT +M  +       +AL+IF EM+K  ++ D V  + ++  
Sbjct: 550 VDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYA 609

Query: 261 NAILGDLKRG-KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVS 319
            +  G + +G    +      G+         ++ + S+ G LD +  +   +  K   +
Sbjct: 610 CSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPA 669

Query: 320 -WTAIISG---YVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGE 365
            W A++S    Y        A NQ +++   ++ +  S TL+S + A+  
Sbjct: 670 VWVALLSACRVYANVELGEYAANQLLEL---ESGNDGSYTLLSNIYANAR 716


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  259 bits (663), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 142/431 (32%), Positives = 238/431 (55%), Gaps = 2/431 (0%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           LF  +K P +   N ++ G ++N  F  A+  +   R  G +PN  T   V++ C  L  
Sbjct: 68  LFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACARLLD 127

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
             L   IH L +K G   DV V  S++ +Y+    L+ A ++F ++  K+V+SWT ++  
Sbjct: 128 LQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAIISG 187

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           ++      +A+ +FR + +  +  D+  ++ ++S    LGDL  G+ +H  ++  G+   
Sbjct: 188 YIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRN 247

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           + +  S++ MY+KCG+++ +RSVF+ + EK +VSW A+I GY  NG  +EA++ F++M++
Sbjct: 248 VFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQR 307

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
           E     D  T+V +L+A   L ALE+   + G+     F     +   LI  Y+KCG++ 
Sbjct: 308 ENVKP-DCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLGTALIDLYAKCGSMS 366

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            A+ VF+ M   +D V WN II G  +NG+ + +  L+ ++ + G  PD +T++ +L  C
Sbjct: 367 RAWEVFKGMK-EKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGLLCGC 425

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI 525
            HAGL ++G   FN M     + PS EHYGC+VDLL RAG L +A  L   +       +
Sbjct: 426 THAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIV 485

Query: 526 WRALLSGCVLH 536
           W ALL  C +H
Sbjct: 486 WGALLGACRIH 496



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 120/470 (25%), Positives = 214/470 (45%), Gaps = 40/470 (8%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C D Y  + +L   F          LF +I + N+  W+ +I G   N   + +++ +  
Sbjct: 43  CHDNYLLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGL 102

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------- 105
           M   G LPN+FT   VL A A L +L+L   IH L+VK G + D                
Sbjct: 103 MRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGY 162

Query: 106 ------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                 +F+ + +  +VS  AI++G+I    F++A+ +F       L P++ T++ V+  
Sbjct: 163 LEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSA 222

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C  LG     E IH   +++G++ +V V  S++DMY+   +++ A  +F  M  KD++SW
Sbjct: 223 CTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSW 282

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
             M+  +       +A+ +F +M++  +  D   ++ ++S  A LG L+ G+ +   V  
Sbjct: 283 GAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDR 342

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
                   L  ++I +Y+KCG +  +  VF  + EK  V W AIISG   NG  + +   
Sbjct: 343 NEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGL 402

Query: 340 FIKMRQE--KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ------ 391
           F ++ +   K D    I L+   T +G        L   G  +     R+ S+       
Sbjct: 403 FGQVEKLGIKPDGNTFIGLLCGCTHAG--------LVDEGRRYFNSMYRFFSLTPSIEHY 454

Query: 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALA 441
            C++    + G +D A+ +   M    + + W  ++    +  H +T LA
Sbjct: 455 GCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGACRI--HRDTQLA 502



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 90/387 (23%), Positives = 180/387 (46%), Gaps = 29/387 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L+  Y K G +++A  +FD+IP+KNVVSW+ +I GY   G   +++  F  ++
Sbjct: 146 DVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLL 205

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
              L P+SFT+V VL A   L +L     IH  +++ G+  +                  
Sbjct: 206 EMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNME 265

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +F+G+    +VS  A++ G+  N L ++A+ LF   +   + P+  T++ V+  C 
Sbjct: 266 KARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACA 325

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            LG+  L E + GL  +   + +  +  +++D+Y+    +  A ++F+ M+ KD + W  
Sbjct: 326 RLGALELGEWVSGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNA 385

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQ-LHAQVVLG 280
           ++       Y   +  +F ++ K  I  D    + L+      G +  G++  ++     
Sbjct: 386 IISGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFF 445

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVF-NQITEKSLVSWTAIISG---YVQNGCAREA 336
            L   +     ++ +  + G LD +  +  N   E + + W A++     +     A  A
Sbjct: 446 SLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGACRIHRDTQLAELA 505

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTAS 363
           L Q I++  E  +S + + L +I +A+
Sbjct: 506 LKQLIEL--EPWNSGNYVLLSNIYSAN 530


>gi|225456755|ref|XP_002268980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74600,
           chloroplastic [Vitis vinifera]
 gi|297733984|emb|CBI15231.3| unnamed protein product [Vitis vinifera]
          Length = 893

 Score =  259 bits (663), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 170/561 (30%), Positives = 283/561 (50%), Gaps = 38/561 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGY-----SINGFHEKSMKA 58
           D +  + ++  Y K   + +A   F  +P +NVVSW+ +I G+     SI+ FH      
Sbjct: 282 DVFVGTAIIDLYAKCRDMDQAVKEFLRMPIRNVVSWTTIISGFVQKDDSISAFH-----F 336

Query: 59  FSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK--FGLESDLFEGLKNPY-- 114
           F  M   G   N++T+  VL A      ++ A  +H  + K  F L+S++   L N Y  
Sbjct: 337 FKEMRKVGEKINNYTITSVLTACTEPVMIKEAVQLHSWIFKTGFYLDSNVSSALINMYSK 396

Query: 115 -------------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLT 155
                              L     +++ F  +    +AV LF      GL P+     +
Sbjct: 397 IGVVDLSERVFREMESTKNLAMWAVMISAFAQSGSTGRAVELFQRMLQEGLRPDKFCSSS 456

Query: 156 VIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKD 215
           V+     + S +L  LIH   +K+GL  D+SV +S+  MYS    L+ +  +F +M  KD
Sbjct: 457 VLS---IIDSLSLGRLIHCYILKIGLFTDISVGSSLFTMYSKCGSLEESYTVFEQMPDKD 513

Query: 216 VISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
            +SW  M+  F + ++A  A+++FREM    I  D + L   ++  + L  L++GK++H 
Sbjct: 514 NVSWASMITGFSEHDHAEQAVQLFREMLLEEIRPDQMTLTAALTACSALHSLEKGKEVHG 573

Query: 276 QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
             +   +  E+ +  +++ MYSKCG +  +R VF+ + +K   S ++++SGY QNG   +
Sbjct: 574 YALRARVGKEVLVGGALVNMYSKCGAIVLARRVFDMLPQKDQFSCSSLVSGYAQNGYIED 633

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLI 395
           AL  F ++R      +DS T+ S++ A   L +L+I  QLH    + G     SV + L+
Sbjct: 634 ALLLFHEIRMADL-WIDSFTVSSVIGAVAILNSLDIGTQLHACVTKMGLNAEVSVGSSLV 692

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
           + YSKCG++D  + VFE++    D++SW  +I  Y  +G G  AL +Y  M + G  PDS
Sbjct: 693 TMYSKCGSIDECHKVFEQIE-KPDLISWTAMIVSYAQHGKGAEALKVYDLMRKEGTKPDS 751

Query: 456 STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAG 515
            T++ +L+AC H G+  +G    N M +E  ++P   HY C+VDLL R+G L +A     
Sbjct: 752 VTFVGVLSACSHNGMVEEGYSHLNSMAKEYGIEPGYYHYACMVDLLGRSGRLKEAERFIN 811

Query: 516 KLLEGMGPNIWRALLSGCVLH 536
            +       +W  LL+ C +H
Sbjct: 812 NMPIEPDALLWGILLAACKVH 832



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 145/487 (29%), Positives = 239/487 (49%), Gaps = 32/487 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           + + ++ L+  Y KS  +  A  LFD+ P  NV+SW+I+I G + N   E S + F  M 
Sbjct: 80  NTFMTNSLMGWYCKSNSMVHALRLFDKTPHPNVISWNILISGCNQNFSFEDSWRNFCKMR 139

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES---------DLFEGLKN-- 112
            SG  PN FT   VL A   L +      ++ L +K G  S         DLF  L +  
Sbjct: 140 FSGFDPNQFTYGSVLSACTALGSPLYGELVYSLALKNGFFSNGYVRAGMIDLFAKLCSFE 199

Query: 113 -----------PYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                        +V  NAI++G + N+    A+ LF        +PN+ T  +++  C 
Sbjct: 200 DALRVFQDVLCENVVCWNAIISGAVKNRENWVALDLFCQMCCRFFMPNSFTFSSILTACA 259

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
           AL        + G  IK G   DV V  +++D+Y+   D+D A++ F  M  ++V+SWT 
Sbjct: 260 ALEELEFGRGVQGWVIKCGAGEDVFVGTAIIDLYAKCRDMDQAVKEFLRMPIRNVVSWTT 319

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++  FV  + +  A   F+EMRK     +   + ++++       +K   QLH+ +   G
Sbjct: 320 IISGFVQKDDSISAFHFFKEMRKVGEKINNYTITSVLTACTEPVMIKEAVQLHSWIFKTG 379

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQI-TEKSLVSWTAIISGYVQNGCAREALNQF 340
              +  +S+++I MYSK G +D S  VF ++ + K+L  W  +IS + Q+G    A+  F
Sbjct: 380 FYLDSNVSSALINMYSKIGVVDLSERVFREMESTKNLAMWAVMISAFAQSGSTGRAVELF 439

Query: 341 IKMRQE--KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
            +M QE  + D   S +++SI+       +L +   +H    + G     SV + L + Y
Sbjct: 440 QRMLQEGLRPDKFCSSSVLSIID------SLSLGRLIHCYILKIGLFTDISVGSSLFTMY 493

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
           SKCG+++ +Y VFE+M   +D VSW ++I G+  + H E A+ L+ +M      PD  T 
Sbjct: 494 SKCGSLEESYTVFEQMP-DKDNVSWASMITGFSEHDHAEQAVQLFREMLLEEIRPDQMTL 552

Query: 459 LSILNAC 465
            + L AC
Sbjct: 553 TAALTAC 559



 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 144/511 (28%), Positives = 246/511 (48%), Gaps = 32/511 (6%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPE-KNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           +D   SS L++ Y K G +  +E +F E+   KN+  W+++I  ++ +G   ++++ F  
Sbjct: 382 LDSNVSSALINMYSKIGVVDLSERVFREMESTKNLAMWAVMISAFAQSGSTGRAVELFQR 441

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL--------------- 106
           M+  GL P+ F    VL   + + +L L R IH  ++K GL +D+               
Sbjct: 442 MLQEGLRPDKFCSSSVL---SIIDSLSLGRLIHCYILKIGLFTDISVGSSLFTMYSKCGS 498

Query: 107 -------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                  FE + +   VS  +++ GF  +   +QAV LF       + P+ +T+   +  
Sbjct: 499 LEESYTVFEQMPDKDNVSWASMITGFSEHDHAEQAVQLFREMLLEEIRPDQMTLTAALTA 558

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C AL S    + +HG  ++  +  +V V  ++++MYS    +  A ++F  +  KD  S 
Sbjct: 559 CSALHSLEKGKEVHGYALRARVGKEVLVGGALVNMYSKCGAIVLARRVFDMLPQKDQFSC 618

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           + ++  +    Y  DAL +F E+R + +  D+  + ++I   AIL  L  G QLHA V  
Sbjct: 619 SSLVSGYAQNGYIEDALLLFHEIRMADLWIDSFTVSSVIGAVAILNSLDIGTQLHACVTK 678

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            GL +E+ + +S++ MYSKCG +D    VF QI +  L+SWTA+I  Y Q+G   EAL  
Sbjct: 679 MGLNAEVSVGSSLVTMYSKCGSIDECHKVFEQIEKPDLISWTAMIVSYAQHGKGAEALKV 738

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICL-QLHGIAFEAGF-PRYRSVQNCLISS 397
           +  MR+E T   DS+T V +L+A      +E     L+ +A E G  P Y     C++  
Sbjct: 739 YDLMRKEGTKP-DSVTFVGVLSACSHNGMVEEGYSHLNSMAKEYGIEPGYYHYA-CMVDL 796

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
             + G +  A      M    D + W  ++    V+G  E       ++ E  E  ++  
Sbjct: 797 LGRSGRLKEAERFINNMPIEPDALLWGILLAACKVHGDIELGRLAAKRVIEL-EPCEAGA 855

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVK 488
           Y+++ N C   G   D + I   ++E   VK
Sbjct: 856 YVTLSNICADMGWWEDVMKI-RSLMEGTGVK 885



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 99/201 (49%), Gaps = 3/201 (1%)

Query: 267 LKRGKQLHAQVVLGG-LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIIS 325
           L+  K LHA  +    LQS   ++NS++  Y K   +  +  +F++    +++SW  +IS
Sbjct: 61  LRNTKILHAHFLKTAILQSNTFMTNSLMGWYCKSNSMVHALRLFDKTPHPNVISWNILIS 120

Query: 326 GYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFP 385
           G  QN    ++   F KMR    D  +  T  S+L+A   L +      ++ +A + GF 
Sbjct: 121 GCNQNFSFEDSWRNFCKMRFSGFDP-NQFTYGSVLSACTALGSPLYGELVYSLALKNGFF 179

Query: 386 RYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHK 445
               V+  +I  ++K  + + A  VF+++    +VV WN II G   N     AL L+ +
Sbjct: 180 SNGYVRAGMIDLFAKLCSFEDALRVFQDV-LCENVVCWNAIISGAVKNRENWVALDLFCQ 238

Query: 446 MTETGEVPDSSTYLSILNACG 466
           M     +P+S T+ SIL AC 
Sbjct: 239 MCCRFFMPNSFTFSSILTACA 259



 Score = 40.4 bits (93), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 69/147 (46%), Gaps = 7/147 (4%)

Query: 390 VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
           + N L+  Y K  ++  A  +F++     +V+SWN +I G   N   E +   + KM  +
Sbjct: 83  MTNSLMGWYCKSNSMVHALRLFDKTPH-PNVISWNILISGCNQNFSFEDSWRNFCKMRFS 141

Query: 450 GEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSD 509
           G  P+  TY S+L+AC   G    G ++++  ++           G ++DL A+     D
Sbjct: 142 GFDPNQFTYGSVLSACTALGSPLYGELVYSLALKNGFFSNGYVRAG-MIDLFAKLCSFED 200

Query: 510 ASGLAGKLLEGMGPNI--WRALLSGCV 534
           A  +   +L     N+  W A++SG V
Sbjct: 201 ALRVFQDVL---CENVVCWNAIISGAV 224


>gi|302821737|ref|XP_002992530.1| hypothetical protein SELMODRAFT_135370 [Selaginella moellendorffii]
 gi|300139732|gb|EFJ06468.1| hypothetical protein SELMODRAFT_135370 [Selaginella moellendorffii]
          Length = 849

 Score =  259 bits (663), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 172/565 (30%), Positives = 276/565 (48%), Gaps = 40/565 (7%)

Query: 6   YNSSKLLSN-----YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           ++  +LL N     Y K G +K+A  +F  I   NV SW+I++  Y+ NG H+  ++   
Sbjct: 112 FSGDRLLLNCVVEAYGKCGCVKDARLVFSSIRHPNVYSWTILLAAYAQNGHHKTVLELLR 171

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHG-----------------LMVKFGLE 103
            M L G+ PN+ T+  V+ A + L + + AR IH                  L+  +   
Sbjct: 172 QMDLLGVWPNAVTLATVIGAVSELGDWDEARKIHARAAATCQLTYDVVLVTALIDMYAKC 231

Query: 104 SDLFEG------LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
            D+F         +N  L  CNA+++ +I       AV  FN  + SGL PN VT   + 
Sbjct: 232 GDIFHAEVVFDQARNKDLACCNAMISAYIQLGYTVDAVSTFNRIQPSGLQPNQVTYALLF 291

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
           R C   G  +   + H   I   L  DV VN +++ MYS    L+ A ++F  M  K+V+
Sbjct: 292 RACATNGVYSDARVAHMCFILSKLRPDVVVNTALVSMYSRCGSLEDARRVFDRMPGKNVV 351

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           +W  M+  +    Y  +AL+++  M  + +  D +  +N++   ++   L  G+ +H  V
Sbjct: 352 TWNVMIAGYAQEGYTDEALQLYVSMEAAGVEPDEITFVNVLESCSLAEHLAAGRDIHKHV 411

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQ--ITEKSLVSWTAIISGYVQNGCARE 335
           V  G  S L + +++I MYS CG L  +  VF++   T  S++SWTA+++   +NG  R 
Sbjct: 412 VDAGYDSSLTVLSALITMYSACGSLGDAVDVFHKGVTTHSSVISWTAMLTALTRNGEGRS 471

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFE----AGFPRYRSVQ 391
           AL  F KM  E   + + +T VS + A   + AL   ++ H I FE     G+     + 
Sbjct: 472 ALALFRKMDLEGVKA-NVVTFVSTIDACSSIGAL---VEGHAI-FERVIVTGYLIDVVLG 526

Query: 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE 451
             LI+ Y KCG +D A  VF  + F +++V+WNTI+     NG    +  L  +M   G 
Sbjct: 527 TSLINLYGKCGRLDYALEVFHHLSF-KNIVTWNTILAASSQNGEETLSAELLQEMDLDGA 585

Query: 452 VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDAS 511
            P+  T L++L  C H GL    +  F  M+  + + P+ EHYGC+VDLL R+G L +  
Sbjct: 586 QPNEMTLLNMLFGCSHNGLVAKAVSYFRSMVYGHCLVPTSEHYGCLVDLLGRSGQLEEVE 645

Query: 512 GLAGKLLEGMGPNIWRALLSGCVLH 536
                    +   +W +LL  CV+H
Sbjct: 646 AFISSKPFSLDSVLWMSLLGSCVIH 670



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 69/129 (53%), Gaps = 3/129 (2%)

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
           ++ + +K+D VD    VS+L  +G++ AL+  +Q H I+    F   R + NC++ +Y K
Sbjct: 71  LEEQNQKSDFVDPAAYVSLLKQAGDVTALKT-IQAH-ISHSKRFSGDRLLLNCVVEAYGK 128

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CG V  A +VF  +    +V SW  ++  Y  NGH +T L L  +M   G  P++ T  +
Sbjct: 129 CGCVKDARLVFSSIRH-PNVYSWTILLAAYAQNGHHKTVLELLRQMDLLGVWPNAVTLAT 187

Query: 461 ILNACGHAG 469
           ++ A    G
Sbjct: 188 VIGAVSELG 196



 Score = 42.7 bits (99), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 39/76 (51%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           ID    + L++ Y K G++  A  +F  +  KN+V+W+ ++   S NG    S +    M
Sbjct: 521 IDVVLGTSLINLYGKCGRLDYALEVFHHLSFKNIVTWNTILAASSQNGEETLSAELLQEM 580

Query: 63  MLSGLLPNSFTMVGVL 78
            L G  PN  T++ +L
Sbjct: 581 DLDGAQPNEMTLLNML 596


>gi|356495419|ref|XP_003516575.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Glycine max]
          Length = 666

 Score =  259 bits (663), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 176/613 (28%), Positives = 307/613 (50%), Gaps = 58/613 (9%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSG-L 67
           SKL + Y +      A +LFD++ +  + SW+ ++  Y   G    ++  F  M+ SG  
Sbjct: 50  SKLATTYAQCHHASYASHLFDKLSQPCLFSWNAMMRMYVQIGRPFDALNLFVEMLGSGRT 109

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
           LP+ FT   V+ A   L  +++   IHG   KFG +SD                      
Sbjct: 110 LPDKFTYPVVIKACGDLSLIDVGVGIHGQTFKFGYDSDTFVQNTLLAMYMNAGEKEAAQL 169

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F+ ++   ++S N ++ G+  N   + AV ++      G+ P+  T+++V+  C  L +
Sbjct: 170 VFDPMQERTVISWNTMINGYFRNNCAEDAVNVYGRMMDVGVEPDCATVVSVLPACGLLKN 229

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
             L   +H L  + G   ++ V N+++DMY     +  A  + + M+ KDV++WT ++  
Sbjct: 230 VELGREVHTLVQEKGFWGNIVVRNALVDMYVKCGQMKEAWLLAKGMDDKDVVTWTTLING 289

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           ++    A  AL +   M+   +  ++V++ +L+S    L  L  GK LHA  +   ++SE
Sbjct: 290 YILNGDARSALMLCGMMQCEGVKPNSVSIASLLSACGSLVYLNHGKCLHAWAIRQKIESE 349

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           + +  ++I MY+KC   + S  VF   ++K    W A++SG++QN  AREA+  F +M  
Sbjct: 350 VIVETALINMYAKCNCGNLSYKVFMGTSKKRTAPWNALLSGFIQNRLAREAIELFKQMLV 409

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
           +     D  T  S+L A   LA L+  + +H     +GF     V + L+  YSKCG++ 
Sbjct: 410 KDVQP-DHATFNSLLPAYAILADLQQAMNIHCYLIRSGFLYRLEVASILVDIYSKCGSLG 468

Query: 406 LAYIVFEEMGFL-RDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
            A+ +F  +    +D++ W+ II  YG +GHG+ A+ L+++M ++G  P+  T+ S+L+A
Sbjct: 469 YAHQIFNIISLKDKDIIIWSAIIAAYGKHGHGKMAVKLFNQMVQSGVKPNHVTFTSVLHA 528

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C HAGL N+G  +FN M++++++    +HY C++DLL RAG L+DA  L   +       
Sbjct: 529 CSHAGLVNEGFSLFNFMLKQHQIISHVDHYTCMIDLLGRAGRLNDAYNLIRTMPITPNHA 588

Query: 525 IWRALLSGCVLH---------------------------------VGRFQDAEALRSGSQ 551
           +W ALL  CV+H                                 VGR+ DAE +R    
Sbjct: 589 VWGALLGACVIHENVELGEVAARWTFKLEPENTGNYVLLAKLYAAVGRWGDAERVRDMVN 648

Query: 552 KKGIIKIPGISFL 564
           + G+ K+P  S +
Sbjct: 649 EVGLRKLPAHSLI 661



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 107/372 (28%), Positives = 186/372 (50%), Gaps = 11/372 (2%)

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
           S +  + +H L + LG+    ++ + +   Y+       A  +F ++    + SW  MM 
Sbjct: 26  SHSETKRLHALILTLGIFSSSNLCSKLATTYAQCHHASYASHLFDKLSQPCLFSWNAMMR 85

Query: 225 LFVDFEYAGDALKIFREMRKS-RIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
           ++V      DAL +F EM  S R + D      +I     L  +  G  +H Q    G  
Sbjct: 86  MYVQIGRPFDALNLFVEMLGSGRTLPDKFTYPVVIKACGDLSLIDVGVGIHGQTFKFGYD 145

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
           S+  + N+++AMY   G+ ++++ VF+ + E++++SW  +I+GY +N CA +A+N + +M
Sbjct: 146 SDTFVQNTLLAMYMNAGEKEAAQLVFDPMQERTVISWNTMINGYFRNNCAEDAVNVYGRM 205

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
                +  D  T+VS+L A G L  +E+  ++H +  E GF     V+N L+  Y KCG 
Sbjct: 206 MDVGVEP-DCATVVSVLPACGLLKNVELGREVHTLVQEKGFWGNIVVRNALVDMYVKCGQ 264

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           +  A+++ + M   +DVV+W T+I GY +NG   +AL L   M   G  P+S +  S+L+
Sbjct: 265 MKEAWLLAKGMDD-KDVVTWTTLINGYILNGDARSALMLCGMMQCEGVKPNSVSIASLLS 323

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
           ACG     N G  +    I + K++        ++++ A+  C      L+ K+  G   
Sbjct: 324 ACGSLVYLNHGKCLHAWAIRQ-KIESEVIVETALINMYAKCNC----GNLSYKVFMGTSK 378

Query: 524 N---IWRALLSG 532
                W ALLSG
Sbjct: 379 KRTAPWNALLSG 390



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 110/480 (22%), Positives = 223/480 (46%), Gaps = 37/480 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + LL+ Y  +G+ + A+ +FD + E+ V+SW+ +I+GY  N   E ++  +  MM
Sbjct: 147 DTFVQNTLLAMYMNAGEKEAAQLVFDPMQERTVISWNTMINGYFRNNCAEDAVNVYGRMM 206

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
             G+ P+  T+V VL A   L+N+EL R +H L+ + G   +                  
Sbjct: 207 DVGVEPDCATVVSVLPACGLLKNVELGREVHTLVQEKGFWGNIVVRNALVDMYVKCGQMK 266

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               L +G+ +  +V+   ++ G+I N   + A++L    +  G+ PN+V++ +++  C 
Sbjct: 267 EAWLLAKGMDDKDVVTWTTLINGYILNGDARSALMLCGMMQCEGVKPNSVSIASLLSACG 326

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
           +L      + +H   I+  +  +V V  ++++MY+     + + ++F     K    W  
Sbjct: 327 SLVYLNHGKCLHAWAIRQKIESEVIVETALINMYAKCNCGNLSYKVFMGTSKKRTAPWNA 386

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++  F+    A +A+++F++M    +  D     +L+   AIL DL++   +H  ++  G
Sbjct: 387 LLSGFIQNRLAREAIELFKQMLVKDVQPDHATFNSLLPAYAILADLQQAMNIHCYLIRSG 446

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT--EKSLVSWTAIISGYVQNGCAREALNQ 339
               L +++ ++ +YSKCG L  +  +FN I+  +K ++ W+AII+ Y ++G  + A+  
Sbjct: 447 FLYRLEVASILVDIYSKCGSLGYAHQIFNIISLKDKDIIIWSAIIAAYGKHGHGKMAVKL 506

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAF-EAGFPRYRSVQNCLISSY 398
           F +M Q      + +T  S+L A      +     L      +     +     C+I   
Sbjct: 507 FNQMVQSGVKP-NHVTFTSVLHACSHAGLVNEGFSLFNFMLKQHQIISHVDHYTCMIDLL 565

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
            + G ++ AY +   M    +   W  ++              + H+  E GEV    T+
Sbjct: 566 GRAGRLNDAYNLIRTMPITPNHAVWGALL-----------GACVIHENVELGEVAARWTF 614



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 140/266 (52%), Gaps = 3/266 (1%)

Query: 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
           K+LHA ++  G+ S   L + +   Y++C     +  +F+++++  L SW A++  YVQ 
Sbjct: 31  KRLHALILTLGIFSSSNLCSKLATTYAQCHHASYASHLFDKLSQPCLFSWNAMMRMYVQI 90

Query: 331 GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV 390
           G   +ALN F++M        D  T   ++ A G+L+ +++ + +HG  F+ G+     V
Sbjct: 91  GRPFDALNLFVEMLGSGRTLPDKFTYPVVIKACGDLSLIDVGVGIHGQTFKFGYDSDTFV 150

Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
           QN L++ Y   G  + A +VF+ M   R V+SWNT+I GY  N   E A+ +Y +M + G
Sbjct: 151 QNTLLAMYMNAGEKEAAQLVFDPMQ-ERTVISWNTMINGYFRNNCAEDAVNVYGRMMDVG 209

Query: 451 EVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
             PD +T +S+L ACG       G  + + +++E     +      +VD+  + G + +A
Sbjct: 210 VEPDCATVVSVLPACGLLKNVELGREV-HTLVQEKGFWGNIVVRNALVDMYVKCGQMKEA 268

Query: 511 SGLAGKLLEGMGPNIWRALLSGCVLH 536
             LA K ++      W  L++G +L+
Sbjct: 269 WLLA-KGMDDKDVVTWTTLINGYILN 293


>gi|449453904|ref|XP_004144696.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 840

 Score =  259 bits (663), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 177/595 (29%), Positives = 290/595 (48%), Gaps = 33/595 (5%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  D Y  + ++S Y   G + EA  LF+E P KN ++WS ++ GY  NG   + ++ FS
Sbjct: 64  PYRDKYTWNIMISAYANLGNLVEARKLFNETPIKNSITWSSLVSGYCKNGCEVEGLRQFS 123

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY---- 114
            M   G  P+ +T+  VL A + L  L   + IH   +K  LE+++F   GL + Y    
Sbjct: 124 QMWSDGQKPSQYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCK 183

Query: 115 -----------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
                             V   A++ G+  N    +A+  F   R  G+  N  T  +++
Sbjct: 184 CLLEAEYLFFSLPDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSIL 243

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
             C ++ + A    +HG  I  G   +V V ++++DMY+   DL +A  I   ME  DV+
Sbjct: 244 TACTSISAYAFGRQVHGCIIWSGFGPNVYVQSALVDMYAKCGDLASARMILDTMEIDDVV 303

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
            W  M+   V   Y  +AL +F +M    I  D     +++   A   +LK G+ +H+  
Sbjct: 304 CWNSMIVGCVTHGYMEEALVLFHKMHNRDIRIDDFTYPSVLKSLASCKNLKIGESVHSLT 363

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           +  G  +   +SN+++ MY+K G+L  +  VFN+I +K ++SWT++++GYV NG   +AL
Sbjct: 364 IKTGFDACKTVSNALVDMYAKQGNLSCALDVFNKILDKDVISWTSLVTGYVHNGFHEKAL 423

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
             F  MR  + D +D   +  + +A  EL  +E   Q+H    ++      S +N LI+ 
Sbjct: 424 QLFCDMRTARVD-LDQFVVACVFSACAELTVIEFGRQVHANFIKSSAGSLLSAENSLITM 482

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET-GEVPDSS 456
           Y+KCG ++ A  VF+ M   R+V+SW  II GY  NG  ET  + +  M +  G  P S 
Sbjct: 483 YAKCGCLEDAIRVFDSME-TRNVISWTAIIVGYAQNGLVETGQSYFESMEKVYGIKPASD 541

Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK 516
            Y  +++  G AG  N+   + N+M     V+P    +  ++      G L +    AGK
Sbjct: 542 HYACMIDLLGRAGKINEAEHLLNRM----DVEPDATIWKSLLSACRVHGNL-ELGERAGK 596

Query: 517 LLEGMGP--NIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFLNSTSR 569
            L  + P  ++   LLS      GR++DA  +R   +  GI K PG S++   S+
Sbjct: 597 NLIKLEPSNSLPYVLLSNMFSVAGRWEDAAHIRRAMKTMGINKEPGYSWIEMKSQ 651


>gi|449481491|ref|XP_004156199.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g13880-like [Cucumis sativus]
          Length = 839

 Score =  259 bits (662), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 184/567 (32%), Positives = 286/567 (50%), Gaps = 37/567 (6%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           PC+  +  + LL+ Y K G  + A+ LFD++ + N+V+++ +I GY      +K M  F 
Sbjct: 92  PCL--FLQNNLLNMYCKCGDTRSADKLFDKMSKSNIVTYNSLISGYVQMSNLDKVMILFD 149

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--------------- 105
                GL  + +T  G L A +   NL   + IHGL++ +GL S                
Sbjct: 150 KARRLGLKLDKYTCAGALTACSQSGNLSAGKMIHGLILVYGLGSQVVLTNSLIDMYSKCG 209

Query: 106 -------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                  LF+       VS N+++AG++ N  +++ + +      +GL  N  T+ + ++
Sbjct: 210 QVDYARILFDHSDKLDGVSWNSLIAGYVQNGKYEELLTILQKMHQNGLAFNTYTLGSALK 269

Query: 159 GCVAL--GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
            C +   G +    ++H   IKLGL LDV V  ++LDMY+    LD AIQIF +M  K+V
Sbjct: 270 ACSSNFNGCKMFGTMLHDHAIKLGLHLDVVVGTALLDMYAKTGSLDDAIQIFDQMVDKNV 329

Query: 217 ISWTRMMGLFVDFEYAGD-----ALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGK 271
           + +  MM   +  E   D     AL +F EM+   I        +L+    I+ D K  K
Sbjct: 330 VMYNAMMAGLLQQETIEDKCAYKALNLFFEMKSCGIKPSMFTYSSLLKACIIVEDFKFAK 389

Query: 272 QLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNG 331
           Q+HA +   GL S+  + + +I +YS  G +  +   FN I   ++V  TA+I GY+QNG
Sbjct: 390 QVHALMCKNGLLSDEYIGSILIDLYSVLGSMMDALLCFNSIHNLTIVPMTAMIXGYLQNG 449

Query: 332 CAREALNQFIKM--RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS 389
               AL+ F ++   +EK D     T++S     G L + E   Q+ G A + G  R+  
Sbjct: 450 EFESALSLFYELLTYEEKPDEFIXSTIMSSCANMGMLRSGE---QIQGHATKVGISRFTI 506

Query: 390 VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
            QN  I  Y+K G++  A + F++M    D+VSW+T+I     +GH   AL  +  M   
Sbjct: 507 FQNSQIWMYAKSGDLYAANLTFQQMEN-PDIVSWSTMICSNAQHGHAMEALRFFELMKSC 565

Query: 450 GEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSD 509
           G  P+   +L +L AC H GL  +GL  F+ M ++ K+K   +H  CVVDLL RAG L+D
Sbjct: 566 GIEPNHFAFLGVLIACSHRGLVEEGLRYFDTMEKDYKMKLHVKHCVCVVDLLGRAGRLAD 625

Query: 510 ASGLAGKLLEGMGPNIWRALLSGCVLH 536
           A  L  +L     P +WRALLS C +H
Sbjct: 626 AESLILRLGFEHEPVMWRALLSACRIH 652



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 116/493 (23%), Positives = 216/493 (43%), Gaps = 34/493 (6%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ L+  Y K G++  A  LFD   + + VSW+ +I GY  NG +E+ +     M  +GL
Sbjct: 198 TNSLIDMYSKCGQVDYARILFDHSDKLDGVSWNSLIAGYVQNGKYEELLTILQKMHQNGL 257

Query: 68  LPNSFTMVGVLVAAAGLQN--LELARSIHGLMVKFGLESD-------------------- 105
             N++T+   L A +   N        +H   +K GL  D                    
Sbjct: 258 AFNTYTLGSALKACSSNFNGCKMFGTMLHDHAIKLGLHLDVVVGTALLDMYAKTGSLDDA 317

Query: 106 --LFEGLKNPYLVSCNAIVAGF-----INNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
             +F+ + +  +V  NA++AG      I +K   +A+ LF   +  G+ P+  T  ++++
Sbjct: 318 IQIFDQMVDKNVVMYNAMMAGLLQQETIEDKCAYKALNLFFEMKSCGIKPSMFTYSSLLK 377

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C+ +      + +H L  K GL+ D  + + ++D+YS L  +  A+  F  +    ++ 
Sbjct: 378 ACIIVEDFKFAKQVHALMCKNGLLSDEYIGSILIDLYSVLGSMMDALLCFNSIHNLTIVP 437

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
            T M+  ++       AL +F E+       D      ++S  A +G L+ G+Q+     
Sbjct: 438 MTAMIXGYLQNGEFESALSLFYELLTYEEKPDEFIXSTIMSSCANMGMLRSGEQIQGHAT 497

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
             G+       NS I MY+K GDL ++   F Q+    +VSW+ +I    Q+G A EAL 
Sbjct: 498 KVGISRFTIFQNSQIWMYAKSGDLYAANLTFQQMENPDIVSWSTMICSNAQHGHAMEAL- 556

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL--IS 396
           +F ++ +      +    + +L A      +E  L+      E  +     V++C+  + 
Sbjct: 557 RFFELMKSCGIEPNHFAFLGVLIACSHRGLVEEGLRYFD-TMEKDYKMKLHVKHCVCVVD 615

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
              + G +  A  +   +GF  + V W  ++    ++    TA  +  K+ E  E   S+
Sbjct: 616 LLGRAGRLADAESLILRLGFEHEPVMWRALLSACRIHKDTVTAQRVAQKVIEL-EPLASA 674

Query: 457 TYLSILNACGHAG 469
           +Y+ + N    AG
Sbjct: 675 SYVLLYNIYMDAG 687



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 147/293 (50%), Gaps = 12/293 (4%)

Query: 245 SRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDS 304
           S  + ++V  + L+      G L  GK +H+ ++    +  L L N+++ MY KCGD  S
Sbjct: 53  STFLLESVDYVKLVQSATKTGKLNHGKLVHSHMIKTSFRPCLFLQNNLLNMYCKCGDTRS 112

Query: 305 SRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASG 364
           +  +F+++++ ++V++ ++ISGYVQ     + +  F K R+     +D  T    LTA  
Sbjct: 113 ADKLFDKMSKSNIVTYNSLISGYVQMSNLDKVMILFDKARRLGL-KLDKYTCAGALTACS 171

Query: 365 ELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWN 424
           +   L     +HG+    G      + N LI  YSKCG VD A I+F+    L D VSWN
Sbjct: 172 QSGNLSAGKMIHGLILVYGLGSQVVLTNSLIDMYSKCGQVDYARILFDHSDKL-DGVSWN 230

Query: 425 TIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEE 484
           ++I GY  NG  E  L +  KM + G   ++ T  S L AC       +G  +F  M+ +
Sbjct: 231 SLIAGYVQNGKYEELLTILQKMHQNGLAFNTYTLGSALKACSS---NFNGCKMFGTMLHD 287

Query: 485 NKVKPSQEHYGCVV-----DLLARAGCLSDASGLAGKLLEGMGPNIWRALLSG 532
           + +K    H   VV     D+ A+ G L DA  +  ++++     ++ A+++G
Sbjct: 288 HAIKLGL-HLDVVVGTALLDMYAKTGSLDDAIQIFDQMVDK-NVVMYNAMMAG 338



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 103/386 (26%), Positives = 182/386 (47%), Gaps = 34/386 (8%)

Query: 144 SGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDA 203
           S  +  +V  + +++     G     +L+H   IK      + + N++L+MY    D  +
Sbjct: 53  STFLLESVDYVKLVQSATKTGKLNHGKLVHSHMIKTSFRPCLFLQNNLLNMYCKCGDTRS 112

Query: 204 AIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAI 263
           A ++F +M   +++++  ++  +V        + +F + R+  +  D       ++  + 
Sbjct: 113 ADKLFDKMSKSNIVTYNSLISGYVQMSNLDKVMILFDKARRLGLKLDKYTCAGALTACSQ 172

Query: 264 LGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAI 323
            G+L  GK +H  +++ GL S++ L+NS+I MYSKCG +D +R +F+   +   VSW ++
Sbjct: 173 SGNLSAGKMIHGLILVYGLGSQVVLTNSLIDMYSKCGQVDYARILFDHSDKLDGVSWNSL 232

Query: 324 ISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTA-SGELAALEIC-LQLHGIAFE 381
           I+GYVQNG   E L    KM Q    + ++ TL S L A S      ++    LH  A +
Sbjct: 233 IAGYVQNGKYEELLTILQKMHQNGL-AFNTYTLGSALKACSSNFNGCKMFGTMLHDHAIK 291

Query: 382 AGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGE---- 437
            G      V   L+  Y+K G++D A  +F++M   ++VV +N ++ G       E    
Sbjct: 292 LGLHLDVVVGTALLDMYAKTGSLDDAIQIFDQM-VDKNVVMYNAMMAGLLQQETIEDKCA 350

Query: 438 -TALALYHKMTETGEVPDSSTYLSILNAC-----------GHAGLTNDGLVIFNQMIEEN 485
             AL L+ +M   G  P   TY S+L AC            HA +  +GL+         
Sbjct: 351 YKALNLFFEMKSCGIKPSMFTYSSLLKACIIVEDFKFAKQVHALMCKNGLL--------- 401

Query: 486 KVKPSQEHYGCV-VDLLARAGCLSDA 510
               S E+ G + +DL +  G + DA
Sbjct: 402 ----SDEYIGSILIDLYSVLGSMMDA 423


>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
 gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
           Group]
 gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
          Length = 658

 Score =  259 bits (662), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 146/466 (31%), Positives = 252/466 (54%), Gaps = 25/466 (5%)

Query: 93  IHGLMVKFGLESD----------------------LFEGLKNPYLVSCNAIVAGFINNKL 130
           +HG +VK+G  +                       +F+ +    ++S N+I+ G  +N L
Sbjct: 6   VHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCASNGL 65

Query: 131 FQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNS 190
           + +AV LF      G   ++ T+L+V+  CV      +  ++HG +++ GLI + S+ N+
Sbjct: 66  YDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSLGNA 125

Query: 191 VLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICD 250
           +LDMYS   D  +  +IFR ME K+V+SWT M+  +    +      +F+EM    I  D
Sbjct: 126 LLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGIRPD 185

Query: 251 TVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFN 310
             A+ + +   A    LK GK +H   +  G++  L ++N+++ MY KCG ++ +R +F+
Sbjct: 186 VFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFIFD 245

Query: 311 QITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALE 370
            +T+K  +SW  +I GY ++  A EA   F +M  +     +++T+  IL A+  L++LE
Sbjct: 246 HVTKKDTISWNTLIGGYSRSNLANEAFTLFNEMLLQLRP--NAVTMACILPAAASLSSLE 303

Query: 371 ICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGY 430
              ++H  A   G+     V N L+  Y KCG + LA  +F +M   ++++SW  +I GY
Sbjct: 304 RGREMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLF-DMLTNKNLISWTIMIAGY 362

Query: 431 GVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPS 490
           G++G G  A+AL+ +M  +G  PD+ ++ +IL AC H+GL ++G   FN M  E++++P 
Sbjct: 363 GMHGRGRDAIALFEQMKGSGIQPDAGSFSAILYACSHSGLRDEGWRFFNAMRNEHRIEPK 422

Query: 491 QEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
            +HY C+VDLL   G L +A      +      +IW +LL GC +H
Sbjct: 423 LKHYACMVDLLCHTGNLKEAYEFIETMPIEPDSSIWVSLLRGCRIH 468



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 114/453 (25%), Positives = 215/453 (47%), Gaps = 47/453 (10%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+S Y KS +I++A  +FDE+P+++++SW+ +I G + NG ++K+++ F  M L G   +
Sbjct: 25  LISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCASNGLYDKAVELFVRMWLEGQELD 84

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFE 108
           S T++ V+ A        +   +HG  V+ GL S+                      +F 
Sbjct: 85  STTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSLGNALLDMYSNCSDWRSTNKIFR 144

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            ++   +VS  A++  +     F +   LF      G+ P+   + + +       S   
Sbjct: 145 NMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGIRPDVFAITSALDAFAGNESLKH 204

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
            + +HG  I+ G+   + V N++++MY     ++ A  IF  +  KD ISW  ++G +  
Sbjct: 205 GKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFIFDHVTKKDTISWNTLIGGYSR 264

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
              A +A  +F EM   ++  + V +  ++   A L  L+RG+++HA  V  G   +  +
Sbjct: 265 SNLANEAFTLFNEM-LLQLRPNAVTMACILPAAASLSSLERGREMHAYAVRRGYLEDNFV 323

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
           +N+++ MY KCG L  +R +F+ +T K+L+SWT +I+GY  +G  R+A+  F +M+    
Sbjct: 324 ANALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIAGYGMHGRGRDAIALFEQMKGSGI 383

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN------------CLIS 396
              D+ +  +IL A             H    + G+  + +++N            C++ 
Sbjct: 384 QP-DAGSFSAILYACS-----------HSGLRDEGWRFFNAMRNEHRIEPKLKHYACMVD 431

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYG 429
                GN+  AY   E M    D   W +++ G
Sbjct: 432 LLCHTGNLKEAYEFIETMPIEPDSSIWVSLLRG 464



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 107/393 (27%), Positives = 181/393 (46%), Gaps = 22/393 (5%)

Query: 171 LIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFE 230
           ++HG  +K G     +V N+++  Y+    ++ A+ +F EM  +D+ISW  ++G      
Sbjct: 5   VVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCASNG 64

Query: 231 YAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSN 290
               A+++F  M       D+  LL+++           G  +H   V  GL SE  L N
Sbjct: 65  LYDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSLGN 124

Query: 291 SIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDS 350
           +++ MYS C D  S+  +F  + +K++VSWTA+I+ Y + G   +    F +M  E    
Sbjct: 125 ALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGIRP 184

Query: 351 VDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIV 410
            D   + S L A     +L+    +HG A   G      V N L+  Y KCG ++ A  +
Sbjct: 185 -DVFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFI 243

Query: 411 FEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG---- 466
           F+ +   +D +SWNT+I GY  +     A  L+++M      P++ T   IL A      
Sbjct: 244 FDHVT-KKDTISWNTLIGGYSRSNLANEAFTLFNEMLLQLR-PNAVTMACILPAAASLSS 301

Query: 467 -HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM-GPN 524
              G       +    +E+N V  +      +VD+  + G L     LA +L + +   N
Sbjct: 302 LERGREMHAYAVRRGYLEDNFVANA------LVDMYVKCGALL----LARRLFDMLTNKN 351

Query: 525 I--WRALLSGCVLHVGRFQDAEALRSGSQKKGI 555
           +  W  +++G  +H GR +DA AL    +  GI
Sbjct: 352 LISWTIMIAGYGMH-GRGRDAIALFEQMKGSGI 383



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 90/181 (49%), Gaps = 23/181 (12%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ L+  Y K G ++EA  +FD + +K+ +SW+ +I GYS +    ++   F+ M+L  L
Sbjct: 224 ANALMEMYVKCGYMEEARFIFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEMLLQ-L 282

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
            PN+ TM  +L AAA L +LE  R +H   V+ G   D                      
Sbjct: 283 RPNAVTMACILPAAASLSSLERGREMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARR 342

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           LF+ L N  L+S   ++AG+  +   + A+ LF   +GSG+ P+A +   ++  C   G 
Sbjct: 343 LFDMLTNKNLISWTIMIAGYGMHGRGRDAIALFEQMKGSGIQPDAGSFSAILYACSHSGL 402

Query: 166 R 166
           R
Sbjct: 403 R 403



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 98/195 (50%), Gaps = 2/195 (1%)

Query: 270 GKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQ 329
           G  +H  +V  G  ++  + N++I+ Y+K   ++ +  VF+++ ++ ++SW +II G   
Sbjct: 3   GLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCAS 62

Query: 330 NGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS 389
           NG   +A+  F++M  E  + +DS TL+S++ A  +     I   +HG +   G     S
Sbjct: 63  NGLYDKAVELFVRMWLEGQE-LDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETS 121

Query: 390 VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
           + N L+  YS C +      +F  M   ++VVSW  +I  Y   GH +    L+ +M   
Sbjct: 122 LGNALLDMYSNCSDWRSTNKIFRNME-QKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLE 180

Query: 450 GEVPDSSTYLSILNA 464
           G  PD     S L+A
Sbjct: 181 GIRPDVFAITSALDA 195



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 84/178 (47%), Gaps = 15/178 (8%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + ++ L+  Y K G +  A  LFD +  KN++SW+I+I GY ++G    ++  F  M 
Sbjct: 320 DNFVANALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIAGYGMHGRGRDAIALFEQMK 379

Query: 64  LSGLLPNSFTMVGVLVAA--AGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAI 121
            SG+ P++ +   +L A   +GL++ E  R  + +  +  +E         P L     +
Sbjct: 380 GSGIQPDAGSFSAILYACSHSGLRD-EGWRFFNAMRNEHRIE---------PKLKHYACM 429

Query: 122 VAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKL 179
           V    +    ++A   + F     + P++   ++++RGC    +  L E +  +  +L
Sbjct: 430 VDLLCHTGNLKEA---YEFIETMPIEPDSSIWVSLLRGCRIHRNVKLAEKVAEMVFEL 484


>gi|449521571|ref|XP_004167803.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic-like [Cucumis sativus]
          Length = 817

 Score =  259 bits (662), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 171/570 (30%), Positives = 293/570 (51%), Gaps = 48/570 (8%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C       K++S Y +   +++   +FD + ++ VV+W+ +I  Y     + +++K FS 
Sbjct: 144 CSSTTPDGKMVSGYSRCDLVRK---VFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSM 200

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE--SDLFEGLKNPYLVS-- 117
           MM  G+ P+  + V V  A + L + + A  +HG++VK G E  +DL+      ++ +  
Sbjct: 201 MMKIGIKPSPVSFVNVFPAFSSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAEL 260

Query: 118 --------------------CNAIVAGFINNKLFQQAV-LLFNFFRGSGLVPNAVTMLTV 156
                                N +++ F+ N    + + L F          + VT+L+ 
Sbjct: 261 GCLEFAKKVFDNCLERNTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSA 320

Query: 157 IRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
           I     L    L E +H   IK   +  V V N+++ MYS    +D + +IF  M  KDV
Sbjct: 321 ISAASHLQKFELAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDV 380

Query: 217 ISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQ 276
           +SW  M+  FV      +AL +F EM+K  ++ D+V +  L+S  + L +   GKQ H  
Sbjct: 381 VSWNTMISAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGY 440

Query: 277 VVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQI--TEKSLVSWTAIISGYVQNGCAR 334
           ++  G+Q E  + + +I MY+K G ++++++VF +    E+   +W +++SGY QNG   
Sbjct: 441 LLRNGIQFE-GMDSYLIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVD 499

Query: 335 EALNQFIKMRQEKTDSV--DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN 392
           +A   F+ +RQ     V  + +TL SIL A      ++   QLHG +      +   V  
Sbjct: 500 QA---FLILRQMLDQKVMPNVVTLASILPACNPSGYIDWGKQLHGFSIRNDLDQNVFVAT 556

Query: 393 CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV 452
            LI  YSK G++  A  VF +    + +V+++T+I GYG +G GE+AL ++H+M ++G  
Sbjct: 557 ALIDMYSKSGSIAHAENVFSKAN-EKSIVTYSTMILGYGQHGMGESALFMFHRMQKSGIQ 615

Query: 453 PDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDAS- 511
           PD+ T +++L+AC +AGL ++GL IF  M     ++PS EH+ CV D+L RAG +  A  
Sbjct: 616 PDAVTLVAVLSACSYAGLVDEGLQIFESMRTVYNIQPSTEHFCCVADMLGRAGRVDKAYE 675

Query: 512 -----GLAGKLLEGMGPNIWRALLSGCVLH 536
                G  G ++E     IW +LL+ C +H
Sbjct: 676 FVIGLGEKGNVME-----IWGSLLAACRIH 700



 Score =  205 bits (521), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 148/549 (26%), Positives = 276/549 (50%), Gaps = 44/549 (8%)

Query: 12  LSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSG--LLP 69
           LS   + G++  A  LFD +P  + V W+ +I G   N F ++++  +S+M  S   +  
Sbjct: 35  LSRLCQEGQLHLARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKC 94

Query: 70  NSFTMVGVLVAAAGLQNLELARSIH-------------------------------GLMV 98
           +S+T   VL A A  +NL + +++H                               G MV
Sbjct: 95  DSYTYSSVLKACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMV 154

Query: 99  ----KFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTML 154
               +  L   +F+ ++   +V+ N ++A ++  + + +AV  F+     G+ P+ V+ +
Sbjct: 155 SGYSRCDLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFV 214

Query: 155 TVIRGCVALGSRALCELIHGLTIKLG--LILDVSVNNSVLDMYSCLMDLDAAIQIFREME 212
            V     +LG      ++HG+ +KLG   + D+ V +S + MY+ L  L+ A ++F    
Sbjct: 215 NVFPAFSSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCL 274

Query: 213 CKDVISWTRMMGLFVDFEYAGDALKIFREMRKSR-IICDTVALLNLISVNAILGDLKRGK 271
            ++   W  M+  FV   ++ + +++F +  +S     D V LL+ IS  + L   +  +
Sbjct: 275 ERNTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAE 334

Query: 272 QLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNG 331
           QLHA V+     +++ + N++IAMYS+C  +D+S  +F+ + EK +VSW  +IS +VQNG
Sbjct: 335 QLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNG 394

Query: 332 CAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ 391
              EAL  F +M+++    VDS+T+ ++L+A+ +L   +I  Q HG     G  ++  + 
Sbjct: 395 LNDEALMLFYEMKKQDL-MVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGI-QFEGMD 452

Query: 392 NCLISSYSKCGNVDLAYIVFEE-MGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
           + LI  Y+K G ++ A  VFE+     RD  +WN+++ GY  NG  + A  +  +M +  
Sbjct: 453 SYLIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQK 512

Query: 451 EVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
            +P+  T  SIL AC  +G  + G  +    I  N +  +      ++D+ +++G ++ A
Sbjct: 513 VMPNVVTLASILPACNPSGYIDWGKQLHGFSI-RNDLDQNVFVATALIDMYSKSGSIAHA 571

Query: 511 SGLAGKLLE 519
             +  K  E
Sbjct: 572 ENVFSKANE 580



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 113/452 (25%), Positives = 216/452 (47%), Gaps = 21/452 (4%)

Query: 99  KFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSG--LVPNAVTMLTV 156
           +  L   LF+ L  P  V  N I+ G + N    +A+L ++  + S   +  ++ T  +V
Sbjct: 43  QLHLARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKCDSYTYSSV 102

Query: 157 IRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDL-------------DA 203
           ++ C    +  + + +H   ++  +     V NS+L+MYS                  D 
Sbjct: 103 LKACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYSRCDL 162

Query: 204 AIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAI 263
             ++F  M  + V++W  ++  +V  E   +A+K F  M K  I    V+ +N+    + 
Sbjct: 163 VRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAFSS 222

Query: 264 LGDLKRGKQLHAQVVLGGLQ--SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWT 321
           LGD K    +H  +V  G +  ++L + +S I MY++ G L+ ++ VF+   E++   W 
Sbjct: 223 LGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTEVWN 282

Query: 322 AIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFE 381
            +IS +VQN  + E +  F +  + +  ++D +TL+S ++A+  L   E+  QLH    +
Sbjct: 283 TMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQLHAFVIK 342

Query: 382 AGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALA 441
                   V N LI+ YS+C ++D ++ +F+ M   +DVVSWNT+I  +  NG  + AL 
Sbjct: 343 NVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMP-EKDVVSWNTMISAFVQNGLNDEALM 401

Query: 442 LYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLL 501
           L+++M +   + DS T  ++L+A       + G      ++         + Y  ++D+ 
Sbjct: 402 LFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFEGMDSY--LIDMY 459

Query: 502 ARAGCLSDASGLAGK-LLEGMGPNIWRALLSG 532
           A++G +  A  +  K          W +++SG
Sbjct: 460 AKSGLIEAAQNVFEKSFSHERDQATWNSMMSG 491



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 114/495 (23%), Positives = 228/495 (46%), Gaps = 45/495 (9%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  S  +  Y + G ++ A+ +FD   E+N   W+ +I  +  N F  + ++ F   +
Sbjct: 246 DLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTEVWNTMISAFVQNNFSLEGIQLFFQAV 305

Query: 64  LS-GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK----------------------F 100
            S     +  T++  + AA+ LQ  ELA  +H  ++K                       
Sbjct: 306 ESEDAAIDEVTLLSAISAASHLQKFELAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSI 365

Query: 101 GLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +F+ +    +VS N +++ F+ N L  +A++LF   +   L+ ++VT+  ++   
Sbjct: 366 DTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAA 425

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFRE--MECKDVIS 218
             L +  + +  HG  ++ G+  +  +++ ++DMY+    ++AA  +F +     +D  +
Sbjct: 426 SDLRNPDIGKQTHGYLLRNGIQFE-GMDSYLIDMYAKSGLIEAAQNVFEKSFSHERDQAT 484

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           W  MM  +        A  I R+M   +++ + V L +++      G +  GKQLH   +
Sbjct: 485 WNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTLASILPACNPSGYIDWGKQLHGFSI 544

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
              L   + ++ ++I MYSK G +  + +VF++  EKS+V+++ +I GY Q+G    AL 
Sbjct: 545 RNDLDQNVFVATALIDMYSKSGSIAHAENVFSKANEKSIVTYSTMILGYGQHGMGESALF 604

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN------ 392
            F +M Q+     D++TLV++L+A      ++  LQ+        F   R+V N      
Sbjct: 605 MFHRM-QKSGIQPDAVTLVAVLSACSYAGLVDEGLQI--------FESMRTVYNIQPSTE 655

Query: 393 ---CLISSYSKCGNVDLAYIVFEEMGFLRDVVS-WNTIIYGYGVNGHGETALALYHKMTE 448
              C+     + G VD AY     +G   +V+  W +++    ++   E    +  K+ E
Sbjct: 656 HFCCVADMLGRAGRVDKAYEFVIGLGEKGNVMEIWGSLLAACRIHKQFELGKLVAKKLLE 715

Query: 449 TGEVPDSSTYLSILN 463
             ++   + Y  +L+
Sbjct: 716 MEKINGKTGYHVLLS 730



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 98/255 (38%), Gaps = 27/255 (10%)

Query: 300 GDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD-SVDSITLVS 358
           G L  +R +F+ +   S V W  II G V N    EAL  +  M+        DS T  S
Sbjct: 42  GQLHLARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKCDSYTYSS 101

Query: 359 ILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV-------------D 405
           +L A  +   L +   +H           R V N L++ YS C +              D
Sbjct: 102 VLKACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYSRCD 161

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
           L   VF+ M   R VV+WNT+I  Y        A+  +  M + G  P   +++++  A 
Sbjct: 162 LVRKVFDTMR-KRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAF 220

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEH------YGCVVDLLARAGCLSDASGLAGKLLE 519
              G   +  V+   +     VK   E+          + + A  GCL  A  +    LE
Sbjct: 221 SSLGDFKNANVVHGML-----VKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLE 275

Query: 520 GMGPNIWRALLSGCV 534
                +W  ++S  V
Sbjct: 276 -RNTEVWNTMISAFV 289


>gi|125527050|gb|EAY75164.1| hypothetical protein OsI_03056 [Oryza sativa Indica Group]
          Length = 669

 Score =  259 bits (662), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 163/552 (29%), Positives = 287/552 (51%), Gaps = 29/552 (5%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           LL++      ++ A  +FD + + N   W+ +I GYS       ++  F  M   G+ P+
Sbjct: 58  LLASPAARHDMRYARKVFDGMAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSPD 117

Query: 71  SFTMVGVLVAAA---GLQNLELARSIHGLMVKFGLESDLF--EGLKNPY----------- 114
           ++TM  V+ A+A   GL+      +IH L+ + G  SD+F   GL N Y           
Sbjct: 118 NYTMAAVVSASAAFAGLKWRSNGDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVKEASK 177

Query: 115 ---------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
                    +VS  ++++       + + + + +  +  G++PN VT+++++  C    +
Sbjct: 178 VFEEMYERDVVSWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQA 237

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
                 ++    K G+  DV + N+++ MY+    L  A++ F+ M  +   SW  ++  
Sbjct: 238 VDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDG 297

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           FV      +AL+IF EM    +  D + L++++S  A LG+L++G  +H+ +   G+  +
Sbjct: 298 FVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYIKDNGICCD 357

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
             L+NS+I MY+KCGD+ ++  VF  +T+K +VSWT ++ GYV+      A N F +M+ 
Sbjct: 358 NILTNSLINMYAKCGDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKI 417

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
            +      + LVS+L+A  +L AL+   ++H    E    +   +++ L+  Y+KCG +D
Sbjct: 418 AEV-VAHEMALVSLLSACSQLGALDKGREIHSYIEEMNVAKDLCLESALVDMYAKCGCID 476

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV-PDSSTYLSILNA 464
            A  +F +M   +  +SWN +I G   NG+G+ A+ L+ +M E  +  PD  T  ++L A
Sbjct: 477 TASEIFRKMQH-KQTLSWNAMIGGLASNGYGKEAVELFDQMLELQDPKPDGITLKAVLGA 535

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C H G+ ++GL  F  ++    V P  EHYGC+VDLL RAG L +A     K+     P 
Sbjct: 536 CAHVGMVDEGLRYF-YLMSSLGVVPDTEHYGCIVDLLGRAGMLDEAFHFIKKMPIEPNPV 594

Query: 525 IWRALLSGCVLH 536
           IW +LL+ C +H
Sbjct: 595 IWGSLLAACRVH 606



 Score =  204 bits (520), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 118/446 (26%), Positives = 229/446 (51%), Gaps = 22/446 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  S L++ Y     +KEA  +F+E+ E++VVSW+ +I   +  G  +K +K  S M 
Sbjct: 155 DVFVMSGLVNYYGAFRSVKEASKVFEEMYERDVVSWTSMISACAQCGHWDKVLKMLSEMQ 214

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------- 106
             G++PN  T++ +L A    Q ++  R ++  + KFG+E+D+                 
Sbjct: 215 AEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGCLS 274

Query: 107 -----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                F+ +   Y  S N ++ GF+ N   ++A+ +F      G+ P+ +T+++V+  C 
Sbjct: 275 DALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACA 334

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            LG       +H      G+  D  + NS+++MY+   D+ AA ++F+ M  KDV+SWT 
Sbjct: 335 QLGELRKGMHVHSYIKDNGICCDNILTNSLINMYAKCGDMAAAERVFQTMTKKDVVSWTV 394

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+  +V       A  +F EM+ + ++   +AL++L+S  + LG L +G+++H+ +    
Sbjct: 395 MVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQLGALDKGREIHSYIEEMN 454

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           +  +L L ++++ MY+KCG +D++  +F ++  K  +SW A+I G   NG  +EA+  F 
Sbjct: 455 VAKDLCLESALVDMYAKCGCIDTASEIFRKMQHKQTLSWNAMIGGLASNGYGKEAVELFD 514

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +M + +    D ITL ++L A   +  ++  L+   +    G         C++    + 
Sbjct: 515 QMLELQDPKPDGITLKAVLGACAHVGMVDEGLRYFYLMSSLGVVPDTEHYGCIVDLLGRA 574

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTII 427
           G +D A+   ++M    + V W +++
Sbjct: 575 GMLDEAFHFIKKMPIEPNPVIWGSLL 600



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 134/473 (28%), Positives = 230/473 (48%), Gaps = 25/473 (5%)

Query: 67  LLPNSFT---MVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVA 123
           L  +SF    ++ +L + A   ++  AR +             F+G+  P     N ++ 
Sbjct: 45  LTSDSFVAGRLIALLASPAARHDMRYARKV-------------FDGMAQPNAFVWNCMIR 91

Query: 124 GFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV---ALGSRALCELIHGLTIKLG 180
           G+ + +  + A+ +F   R  G+ P+  TM  V+        L  R+  + IH L  ++G
Sbjct: 92  GYSSCEAPRDALAVFREMRRRGVSPDNYTMAAVVSASAAFAGLKWRSNGDAIHALVRRIG 151

Query: 181 LILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFR 240
              DV V + +++ Y     +  A ++F EM  +DV+SWT M+       +    LK+  
Sbjct: 152 FTSDVFVMSGLVNYYGAFRSVKEASKVFEEMYERDVVSWTSMISACAQCGHWDKVLKMLS 211

Query: 241 EMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCG 300
           EM+   II + V +++L+S       +  G+ ++ QV   G+++++ + N++I+MY+KCG
Sbjct: 212 EMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNALISMYTKCG 271

Query: 301 DLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSIL 360
            L  +   F  +  +   SW  +I G+VQN   +EAL  F +M      + D ITLVS+L
Sbjct: 272 CLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGV-TPDGITLVSVL 330

Query: 361 TASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDV 420
           +A  +L  L   + +H    + G      + N LI+ Y+KCG++  A  VF+ M   +DV
Sbjct: 331 SACAQLGELRKGMHVHSYIKDNGICCDNILTNSLINMYAKCGDMAAAERVFQTMT-KKDV 389

Query: 421 VSWNTIIYGYGVNGHGET-ALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFN 479
           VSW  ++ GY V GH  T A  L+ +M     V      +S+L+AC   G  + G  I +
Sbjct: 390 VSWTVMVCGY-VKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQLGALDKGREI-H 447

Query: 480 QMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSG 532
             IEE  V         +VD+ A+ GC+  AS +  K+      + W A++ G
Sbjct: 448 SYIEEMNVAKDLCLESALVDMYAKCGCIDTASEIFRKMQHKQTLS-WNAMIGG 499



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 52/233 (22%), Positives = 100/233 (42%), Gaps = 23/233 (9%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C D   ++ L++ Y K G +  AE +F  + +K+VVSW++++ GY        +   F  
Sbjct: 355 CCDNILTNSLINMYAKCGDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEE 414

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL--------------- 106
           M ++ ++ +   +V +L A + L  L+  R IH  + +  +  DL               
Sbjct: 415 MKIAEVVAHEMALVSLLSACSQLGALDKGREIHSYIEEMNVAKDLCLESALVDMYAKCGC 474

Query: 107 -------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFN-FFRGSGLVPNAVTMLTVIR 158
                  F  +++   +S NA++ G  +N   ++AV LF+         P+ +T+  V+ 
Sbjct: 475 IDTASEIFRKMQHKQTLSWNAMIGGLASNGYGKEAVELFDQMLELQDPKPDGITLKAVLG 534

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM 211
            C  +G          L   LG++ D      ++D+      LD A    ++M
Sbjct: 535 ACAHVGMVDEGLRYFYLMSSLGVVPDTEHYGCIVDLLGRAGMLDEAFHFIKKM 587


>gi|125571373|gb|EAZ12888.1| hypothetical protein OsJ_02809 [Oryza sativa Japonica Group]
          Length = 669

 Score =  259 bits (662), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 163/552 (29%), Positives = 287/552 (51%), Gaps = 29/552 (5%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           LL++      ++ A  +FD + + N   W+ +I GYS       ++  F  M   G+ P+
Sbjct: 58  LLASPAARHDMRYARKVFDGMAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSPD 117

Query: 71  SFTMVGVLVAAA---GLQNLELARSIHGLMVKFGLESDLF--EGLKNPY----------- 114
           ++TM  V+ A+A   GL+      +IH L+ + G  SD+F   GL N Y           
Sbjct: 118 NYTMAAVVSASAAFAGLKWRSNGDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVEEASK 177

Query: 115 ---------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
                    +VS  ++++       + + + + +  +  G++PN VT+++++  C    +
Sbjct: 178 VFEEMYERDVVSWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQA 237

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
                 ++    K G+  DV + N+++ MY+    L  A++ F+ M  +   SW  ++  
Sbjct: 238 VDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDG 297

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           FV      +AL+IF EM    +  D + L++++S  A LG+L++G  +H+ +   G+  +
Sbjct: 298 FVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYIKDNGICCD 357

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
             L+NS+I MY+KCGD+ ++  VF  +T+K +VSWT ++ GYV+      A N F +M+ 
Sbjct: 358 NILTNSLINMYAKCGDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKI 417

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
            +      + LVS+L+A  +L AL+   ++H    E    +   +++ L+  Y+KCG +D
Sbjct: 418 AEV-VAHEMALVSLLSACSQLGALDKGREIHSYIEEMNVAKDLCLESALVDMYAKCGCID 476

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV-PDSSTYLSILNA 464
            A  +F +M   +  +SWN +I G   NG+G+ A+ L+ +M E  +  PD  T  ++L A
Sbjct: 477 TASEIFRKMQH-KQTLSWNAMIGGLASNGYGKEAVELFDQMLELQDPKPDGITLKAVLGA 535

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C H G+ ++GL  F  ++    V P  EHYGC+VDLL RAG L +A     K+     P 
Sbjct: 536 CAHVGMVDEGLRYF-YLMSSLGVVPDTEHYGCIVDLLGRAGMLDEAFHFIKKMPIEPNPV 594

Query: 525 IWRALLSGCVLH 536
           IW +LL+ C +H
Sbjct: 595 IWGSLLAACRVH 606



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 117/446 (26%), Positives = 229/446 (51%), Gaps = 22/446 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  S L++ Y     ++EA  +F+E+ E++VVSW+ +I   +  G  +K +K  S M 
Sbjct: 155 DVFVMSGLVNYYGAFRSVEEASKVFEEMYERDVVSWTSMISACAQCGHWDKVLKMLSEMQ 214

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------- 106
             G++PN  T++ +L A    Q ++  R ++  + KFG+E+D+                 
Sbjct: 215 AEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGCLS 274

Query: 107 -----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                F+ +   Y  S N ++ GF+ N   ++A+ +F      G+ P+ +T+++V+  C 
Sbjct: 275 DALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACA 334

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            LG       +H      G+  D  + NS+++MY+   D+ AA ++F+ M  KDV+SWT 
Sbjct: 335 QLGELRKGMHVHSYIKDNGICCDNILTNSLINMYAKCGDMAAAERVFQTMTKKDVVSWTV 394

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+  +V       A  +F EM+ + ++   +AL++L+S  + LG L +G+++H+ +    
Sbjct: 395 MVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQLGALDKGREIHSYIEEMN 454

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           +  +L L ++++ MY+KCG +D++  +F ++  K  +SW A+I G   NG  +EA+  F 
Sbjct: 455 VAKDLCLESALVDMYAKCGCIDTASEIFRKMQHKQTLSWNAMIGGLASNGYGKEAVELFD 514

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +M + +    D ITL ++L A   +  ++  L+   +    G         C++    + 
Sbjct: 515 QMLELQDPKPDGITLKAVLGACAHVGMVDEGLRYFYLMSSLGVVPDTEHYGCIVDLLGRA 574

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTII 427
           G +D A+   ++M    + V W +++
Sbjct: 575 GMLDEAFHFIKKMPIEPNPVIWGSLL 600



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 134/473 (28%), Positives = 231/473 (48%), Gaps = 25/473 (5%)

Query: 67  LLPNSFT---MVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVA 123
           L  +SF    ++ +L + A   ++  AR +             F+G+  P     N ++ 
Sbjct: 45  LTSDSFVAGRLIALLASPAARHDMRYARKV-------------FDGMAQPNAFVWNCMIR 91

Query: 124 GFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV---ALGSRALCELIHGLTIKLG 180
           G+ + +  + A+ +F   R  G+ P+  TM  V+        L  R+  + IH L  ++G
Sbjct: 92  GYSSCEAPRDALAVFREMRRRGVSPDNYTMAAVVSASAAFAGLKWRSNGDAIHALVRRIG 151

Query: 181 LILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFR 240
              DV V + +++ Y     ++ A ++F EM  +DV+SWT M+       +    LK+  
Sbjct: 152 FTSDVFVMSGLVNYYGAFRSVEEASKVFEEMYERDVVSWTSMISACAQCGHWDKVLKMLS 211

Query: 241 EMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCG 300
           EM+   II + V +++L+S       +  G+ ++ QV   G+++++ + N++I+MY+KCG
Sbjct: 212 EMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNALISMYTKCG 271

Query: 301 DLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSIL 360
            L  +   F  +  +   SW  +I G+VQN   +EAL  F +M      + D ITLVS+L
Sbjct: 272 CLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGV-TPDGITLVSVL 330

Query: 361 TASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDV 420
           +A  +L  L   + +H    + G      + N LI+ Y+KCG++  A  VF+ M   +DV
Sbjct: 331 SACAQLGELRKGMHVHSYIKDNGICCDNILTNSLINMYAKCGDMAAAERVFQTMT-KKDV 389

Query: 421 VSWNTIIYGYGVNGHGET-ALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFN 479
           VSW  ++ GY V GH  T A  L+ +M     V      +S+L+AC   G  + G  I +
Sbjct: 390 VSWTVMVCGY-VKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQLGALDKGREI-H 447

Query: 480 QMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSG 532
             IEE  V         +VD+ A+ GC+  AS +  K+      + W A++ G
Sbjct: 448 SYIEEMNVAKDLCLESALVDMYAKCGCIDTASEIFRKMQHKQTLS-WNAMIGG 499



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 52/233 (22%), Positives = 100/233 (42%), Gaps = 23/233 (9%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C D   ++ L++ Y K G +  AE +F  + +K+VVSW++++ GY        +   F  
Sbjct: 355 CCDNILTNSLINMYAKCGDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEE 414

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL--------------- 106
           M ++ ++ +   +V +L A + L  L+  R IH  + +  +  DL               
Sbjct: 415 MKIAEVVAHEMALVSLLSACSQLGALDKGREIHSYIEEMNVAKDLCLESALVDMYAKCGC 474

Query: 107 -------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFN-FFRGSGLVPNAVTMLTVIR 158
                  F  +++   +S NA++ G  +N   ++AV LF+         P+ +T+  V+ 
Sbjct: 475 IDTASEIFRKMQHKQTLSWNAMIGGLASNGYGKEAVELFDQMLELQDPKPDGITLKAVLG 534

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM 211
            C  +G          L   LG++ D      ++D+      LD A    ++M
Sbjct: 535 ACAHVGMVDEGLRYFYLMSSLGVVPDTEHYGCIVDLLGRAGMLDEAFHFIKKM 587


>gi|118488304|gb|ABK95971.1| unknown [Populus trichocarpa]
          Length = 749

 Score =  259 bits (661), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 160/546 (29%), Positives = 286/546 (52%), Gaps = 31/546 (5%)

Query: 15  YFKSGKIKEAENLFDEIPE-KNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFT 73
           Y + G    A ++F+ +   ++ VSW+I+IHG+  NG     +  F++  ++G  PN  T
Sbjct: 92  YIRCGDFDIAVDVFNSMRRSRDSVSWNILIHGHLDNGALVAGLWWFTNARVAGFEPNIST 151

Query: 74  MVGVLVAAAGLQNLELARSIHGLMVKFGLES---------------------DLFEGLKN 112
           MV V+ A   L        +HG ++K G  +                     +LF+ +  
Sbjct: 152 MVLVIQACRILGTKHDGLILHGYLIKSGFWAISSVQNSLLSMYVDADMECARELFDEMHE 211

Query: 113 PYLVSCNAIVAGFINNKLFQQAVLLF-NFFRGSGLVPNAVTMLTVIRGCVALGSRALC-- 169
             +++ + ++ G++  +  Q  + +F       G+ P+ V M++V++ C +  SR +C  
Sbjct: 212 KDVIAWSVMIGGYLQWEEPQVGLQMFRKMVLVPGIEPDGVVMVSVLKACAS--SRDVCTG 269

Query: 170 ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDF 229
            L+HGL I  G   D+ V NS++DMYS   D  +A ++F E+  ++ +SW  M+  FV  
Sbjct: 270 RLVHGLVIHRGFDCDLFVENSLIDMYSKCKDAGSAFKVFNEISQRNNVSWNSMLSGFVLN 329

Query: 230 EYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLS 289
           E   +A  +   MRK R+  D V L+N++ +          K +H  ++  G ++   + 
Sbjct: 330 ENYSEAQSLISSMRKERVETDEVTLVNILQICKYFVHPFHCKSIHCVMIRRGSEANELVL 389

Query: 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD 349
           +++I  Y+KC  ++ +  VF ++  + +VSW+ +ISG+   G   EA+  + +M ++   
Sbjct: 390 SALIDAYAKCYLIEIAWEVFARMRRRDVVSWSTMISGFAHCGKPDEAIAVYQEMDRDLVK 449

Query: 350 SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYI 409
             + IT++++L A    A L+     HG+A   GF    +V   ++  YSKCG +  +  
Sbjct: 450 P-NVITIINLLEACSVTAELKRSKWAHGVAIRQGFASEVTVGTAVVDMYSKCGEILASRR 508

Query: 410 VFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAG 469
            F+++  L+++V+W+ +I  YG+NG    ALAL+ +M   G  P+  T LS+L AC H G
Sbjct: 509 AFDQLA-LKNIVTWSAMIAAYGMNGLAHEALALFAEMKRHGLKPNPVTTLSVLAACSHGG 567

Query: 470 LTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM--GPNIWR 527
           L  +GL +F  M++E  ++P  EHY C+VD+L RAG L  A  +   + + +  G +IW 
Sbjct: 568 LVEEGLSLFKSMVQELGLEPGFEHYSCMVDMLGRAGKLDTAIEVIKAMPDNLKNGASIWG 627

Query: 528 ALLSGC 533
           +LLS C
Sbjct: 628 SLLSAC 633



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 134/452 (29%), Positives = 231/452 (51%), Gaps = 27/452 (5%)

Query: 38  SWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLM 97
           +W + I   S NG  ++ +  +  +  +G+     ++   ++ A    +    +S+H  +
Sbjct: 14  NWILRIKESSANGKWQEVVSHYHEIKKAGIQTVDVSVFPPILKAWSFLSHRHGKSLHACL 73

Query: 98  VKFGLES----------------------DLFEGLKNPY-LVSCNAIVAGFINNKLFQQA 134
           +K G +S                      D+F  ++     VS N ++ G ++N      
Sbjct: 74  IKQGFDSFTSIGNSIMGFYIRCGDFDIAVDVFNSMRRSRDSVSWNILIHGHLDNGALVAG 133

Query: 135 VLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDM 194
           +  F   R +G  PN  TM+ VI+ C  LG++    ++HG  IK G     SV NS+L M
Sbjct: 134 LWWFTNARVAGFEPNISTMVLVIQACRILGTKHDGLILHGYLIKSGFWAISSVQNSLLSM 193

Query: 195 YSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREM-RKSRIICDTVA 253
           Y    D++ A ++F EM  KDVI+W+ M+G ++ +E     L++FR+M     I  D V 
Sbjct: 194 Y-VDADMECARELFDEMHEKDVIAWSVMIGGYLQWEEPQVGLQMFRKMVLVPGIEPDGVV 252

Query: 254 LLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT 313
           +++++   A   D+  G+ +H  V+  G   +L + NS+I MYSKC D  S+  VFN+I+
Sbjct: 253 MVSVLKACASSRDVCTGRLVHGLVIHRGFDCDLFVENSLIDMYSKCKDAGSAFKVFNEIS 312

Query: 314 EKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICL 373
           +++ VSW +++SG+V N    EA +    MR+E+ ++ D +TLV+IL           C 
Sbjct: 313 QRNNVSWNSMLSGFVLNENYSEAQSLISSMRKERVET-DEVTLVNILQICKYFVHPFHCK 371

Query: 374 QLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVN 433
            +H +    G      V + LI +Y+KC  +++A+ VF  M   RDVVSW+T+I G+   
Sbjct: 372 SIHCVMIRRGSEANELVLSALIDAYAKCYLIEIAWEVFARMR-RRDVVSWSTMISGFAHC 430

Query: 434 GHGETALALYHKMTETGEVPDSSTYLSILNAC 465
           G  + A+A+Y +M      P+  T +++L AC
Sbjct: 431 GKPDEAIAVYQEMDRDLVKPNVITIINLLEAC 462



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 136/500 (27%), Positives = 254/500 (50%), Gaps = 43/500 (8%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML-SGLLP 69
           LLS Y  +  ++ A  LFDE+ EK+V++WS++I GY      +  ++ F  M+L  G+ P
Sbjct: 190 LLSMYVDA-DMECARELFDEMHEKDVIAWSVMIGGYLQWEEPQVGLQMFRKMVLVPGIEP 248

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPYL------------ 115
           +   MV VL A A  +++   R +HGL++  G + DLF    L + Y             
Sbjct: 249 DGVVMVSVLKACASSRDVCTGRLVHGLVIHRGFDCDLFVENSLIDMYSKCKDAGSAFKVF 308

Query: 116 --------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRA 167
                   VS N++++GF+ N+ + +A  L +  R   +  + VT++ +++ C       
Sbjct: 309 NEISQRNNVSWNSMLSGFVLNENYSEAQSLISSMRKERVETDEVTLVNILQICKYFVHPF 368

Query: 168 LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
            C+ IH + I+ G   +  V ++++D Y+    ++ A ++F  M  +DV+SW+ M+  F 
Sbjct: 369 HCKSIHCVMIRRGSEANELVLSALIDAYAKCYLIEIAWEVFARMRRRDVVSWSTMISGFA 428

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
                 +A+ +++EM +  +  + + ++NL+   ++  +LKR K  H   +  G  SE+ 
Sbjct: 429 HCGKPDEAIAVYQEMDRDLVKPNVITIINLLEACSVTAELKRSKWAHGVAIRQGFASEVT 488

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
           +  +++ MYSKCG++ +SR  F+Q+  K++V+W+A+I+ Y  NG A EAL  F +M++  
Sbjct: 489 VGTAVVDMYSKCGEILASRRAFDQLALKNIVTWSAMIAAYGMNGLAHEALALFAEMKRHG 548

Query: 348 TDSVDSITLVSILTASGELAALEICLQL-----HGIAFEAGFPRYRSVQNCLISSYSKCG 402
               + +T +S+L A      +E  L L       +  E GF  Y    +C++    + G
Sbjct: 549 LKP-NPVTTLSVLAACSHGGLVEEGLSLFKSMVQELGLEPGFEHY----SCMVDMLGRAG 603

Query: 403 NVDLAYIVFEEM-GFLRDVVS-WNTIIYG---YGVNGHGETALALYHKMTETGEVPDSST 457
            +D A  V + M   L++  S W +++     YG+   G+ A++   ++    E  +S+ 
Sbjct: 604 KLDTAIEVIKAMPDNLKNGASIWGSLLSACRSYGLTELGKEAISRVLEL----EPSNSAG 659

Query: 458 YLSILNACGHAGLTNDGLVI 477
           YL   +     GL +D   I
Sbjct: 660 YLVASSMYAADGLWDDAARI 679



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 86/413 (20%), Positives = 195/413 (47%), Gaps = 34/413 (8%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L+  Y K      A  +F+EI ++N VSW+ ++ G+ +N  + ++    S M 
Sbjct: 284 DLFVENSLIDMYSKCKDAGSAFKVFNEISQRNNVSWNSMLSGFVLNENYSEAQSLISSMR 343

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES------------------- 104
              +  +  T+V +L       +    +SIH +M++ G E+                   
Sbjct: 344 KERVETDEVTLVNILQICKYFVHPFHCKSIHCVMIRRGSEANELVLSALIDAYAKCYLIE 403

Query: 105 ---DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
              ++F  ++   +VS + +++GF +     +A+ ++       + PN +T++ ++  C 
Sbjct: 404 IAWEVFARMRRRDVVSWSTMISGFAHCGKPDEAIAVYQEMDRDLVKPNVITIINLLEACS 463

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
                   +  HG+ I+ G   +V+V  +V+DMYS   ++ A+ + F ++  K++++W+ 
Sbjct: 464 VTAELKRSKWAHGVAIRQGFASEVTVGTAVVDMYSKCGEILASRRAFDQLALKNIVTWSA 523

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG- 280
           M+  +     A +AL +F EM++  +  + V  L++++  +  G ++ G  L   +V   
Sbjct: 524 MIAAYGMNGLAHEALALFAEMKRHGLKPNPVTTLSVLAACSHGGLVEEGLSLFKSMVQEL 583

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE--KSLVS-WTAIISG---YVQNGCAR 334
           GL+      + ++ M  + G LD++  V   + +  K+  S W +++S    Y      +
Sbjct: 584 GLEPGFEHYSCMVDMLGRAGKLDTAIEVIKAMPDNLKNGASIWGSLLSACRSYGLTELGK 643

Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASG---ELAALEICLQLHGIAFEAGF 384
           EA+++ +++  E ++S   +   S+  A G   + A + +  +  G+   AG+
Sbjct: 644 EAISRVLEL--EPSNSAGYLVASSMYAADGLWDDAARIRVLAKEKGVKVVAGY 694



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 91/327 (27%), Positives = 150/327 (45%), Gaps = 24/327 (7%)

Query: 239 FREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSK 298
           + E++K+ I    V++   I         + GK LHA ++  G  S   + NSI+  Y +
Sbjct: 35  YHEIKKAGIQTVDVSVFPPILKAWSFLSHRHGKSLHACLIKQGFDSFTSIGNSIMGFYIR 94

Query: 299 CGDLDSSRSVFNQITE-KSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLV 357
           CGD D +  VFN +   +  VSW  +I G++ NG     L  F   R    +   S T+V
Sbjct: 95  CGDFDIAVDVFNSMRRSRDSVSWNILIHGHLDNGALVAGLWWFTNARVAGFEPNIS-TMV 153

Query: 358 SILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFL 417
            ++ A   L      L LHG   ++GF    SVQN L+S Y    +++ A  +F+EM   
Sbjct: 154 LVIQACRILGTKHDGLILHGYLIKSGFWAISSVQNSLLSMYVD-ADMECARELFDEM-HE 211

Query: 418 RDVVSWNTIIYGYGVNGHGETALALYHKMT-ETGEVPDSSTYLSILNACGHAGLTNDGLV 476
           +DV++W+ +I GY      +  L ++ KM    G  PD    +S+L AC  +     G +
Sbjct: 212 KDVIAWSVMIGGYLQWEEPQVGLQMFRKMVLVPGIEPDGVVMVSVLKACASSRDVCTGRL 271

Query: 477 IFNQMIEENKVKPSQEHYGCVVDLLARAGCLS-----DASGLAGKLLEGMGP--NI-WRA 528
           +   +I          H G   DL      +        +G A K+   +    N+ W +
Sbjct: 272 VHGLVI----------HRGFDCDLFVENSLIDMYSKCKDAGSAFKVFNEISQRNNVSWNS 321

Query: 529 LLSGCVLHVGRFQDAEALRSGSQKKGI 555
           +LSG VL+   + +A++L S  +K+ +
Sbjct: 322 MLSGFVLN-ENYSEAQSLISSMRKERV 347



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 82/172 (47%), Gaps = 1/172 (0%)

Query: 312 ITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEI 371
           ++   L +W   I     NG  +E ++ + ++++    +VD      IL A   L+    
Sbjct: 7   VSGSKLPNWILRIKESSANGKWQEVVSHYHEIKKAGIQTVDVSVFPPILKAWSFLSHRH- 65

Query: 372 CLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYG 431
              LH    + GF  + S+ N ++  Y +CG+ D+A  VF  M   RD VSWN +I+G+ 
Sbjct: 66  GKSLHACLIKQGFDSFTSIGNSIMGFYIRCGDFDIAVDVFNSMRRSRDSVSWNILIHGHL 125

Query: 432 VNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIE 483
            NG     L  +      G  P+ ST + ++ AC   G  +DGL++   +I+
Sbjct: 126 DNGALVAGLWWFTNARVAGFEPNISTMVLVIQACRILGTKHDGLILHGYLIK 177


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  259 bits (661), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 187/684 (27%), Positives = 318/684 (46%), Gaps = 124/684 (18%)

Query: 1   PCIDPYN-SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAF 59
           P I P +  + ++++Y   G    A  + + +     V W+++I  +   G  + ++   
Sbjct: 84  PFISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVS 143

Query: 60  SHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF------------ 107
             M+ +G  P+ FT+  VL A   L +     + HGL+   G ES++F            
Sbjct: 144 CRMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRC 203

Query: 108 ---------------EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFF------RGSGL 146
                           G+ +  ++S N+IV+  + +     A+ LF+        + +  
Sbjct: 204 GSLEEASMIFDEITQRGIDD--VISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNE 261

Query: 147 VPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQ 206
             + ++++ ++  C +L +    + +HG  I+ G   DV V N+++D Y+    ++ A++
Sbjct: 262 RSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVK 321

Query: 207 IFREMECKDVISWTRMMGLFV---DFEYA------------------------------- 232
           +F  ME KDV+SW  M+  +    +FE A                               
Sbjct: 322 VFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGC 381

Query: 233 -GDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV----------LGG 281
             +AL +FR+M  S  + + V +++++S  A LG   +G ++HA  +           GG
Sbjct: 382 SHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGG 441

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT--EKSLVSWTAIISGYVQNGCAREALNQ 339
              +L + N++I MYSKC    ++RS+F+ I   E+++V+WT +I G+ Q G + +AL  
Sbjct: 442 EDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKL 501

Query: 340 FIKMRQEKTD-SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS----VQNCL 394
           F++M  E    + ++ T+  IL A   LAA+ I  Q+H  A+     RY S    V NCL
Sbjct: 502 FVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIH--AYVLRHHRYESSAYFVANCL 559

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           I  YSKCG+VD A  VF+ M   +  +SW +++ GYG++G G  AL ++ KM + G VPD
Sbjct: 560 IDMYSKCGDVDTARHVFDSMS-QKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPD 618

Query: 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLA 514
             T+L +L AC H G+ + GL  F+ M  +  + P  EHY C +DLLAR+G L  A    
Sbjct: 619 DITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTV 678

Query: 515 GKLLEGMGPNIWRALLSGCVLH---------------------------------VGRFQ 541
             +       +W ALLS C +H                                  GR++
Sbjct: 679 KDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWK 738

Query: 542 DAEALRSGSQKKGIIKIPGISFLN 565
           D   +R   +K GI K PG S++ 
Sbjct: 739 DVARIRHLMKKSGIKKRPGCSWVQ 762


>gi|449456661|ref|XP_004146067.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic-like [Cucumis sativus]
          Length = 793

 Score =  259 bits (661), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 171/570 (30%), Positives = 293/570 (51%), Gaps = 48/570 (8%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C       K++S Y +   +++   +FD + ++ VV+W+ +I  Y     + +++K FS 
Sbjct: 120 CSSTTPDGKMVSGYSRCDLVRK---VFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSM 176

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE--SDLFEGLKNPYLVS-- 117
           MM  G+ P+  + V V  A + L + + A  +HG++VK G E  +DL+      ++ +  
Sbjct: 177 MMKIGIKPSPVSFVNVFPAFSSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAEL 236

Query: 118 --------------------CNAIVAGFINNKLFQQAV-LLFNFFRGSGLVPNAVTMLTV 156
                                N +++ F+ N    + + L F          + VT+L+ 
Sbjct: 237 GCLEFAKKVFDNCLERNTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSA 296

Query: 157 IRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
           I     L    L E +H   IK   +  V V N+++ MYS    +D + +IF  M  KDV
Sbjct: 297 ISAASHLQKFELAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDV 356

Query: 217 ISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQ 276
           +SW  M+  FV      +AL +F EM+K  ++ D+V +  L+S  + L +   GKQ H  
Sbjct: 357 VSWNTMISAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGY 416

Query: 277 VVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQI--TEKSLVSWTAIISGYVQNGCAR 334
           ++  G+Q E  + + +I MY+K G ++++++VF +    E+   +W +++SGY QNG   
Sbjct: 417 LLRNGIQFE-GMDSYLIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVD 475

Query: 335 EALNQFIKMRQEKTDSV--DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN 392
           +A   F+ +RQ     V  + +TL SIL A      ++   QLHG +      +   V  
Sbjct: 476 QA---FLILRQMLDQKVMPNVVTLASILPACNPSGYIDWGKQLHGFSIRNDLDQNVFVAT 532

Query: 393 CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV 452
            LI  YSK G++  A  VF +    + +V+++T+I GYG +G GE+AL ++H+M ++G  
Sbjct: 533 ALIDMYSKSGSIAHAENVFSKAN-EKSIVTYSTMILGYGQHGMGESALFMFHRMQKSGIQ 591

Query: 453 PDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDAS- 511
           PD+ T +++L+AC +AGL ++GL IF  M     ++PS EH+ CV D+L RAG +  A  
Sbjct: 592 PDAVTLVAVLSACSYAGLVDEGLQIFESMRTVYNIQPSTEHFCCVADMLGRAGRVDKAYE 651

Query: 512 -----GLAGKLLEGMGPNIWRALLSGCVLH 536
                G  G ++E     IW +LL+ C +H
Sbjct: 652 FVIGLGEKGNVME-----IWGSLLAACRIH 676



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 146/544 (26%), Positives = 274/544 (50%), Gaps = 44/544 (8%)

Query: 17  KSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSG--LLPNSFTM 74
           + G++  A  LFD +P  + V W+ +I G   N F ++++  +S+M  S   +  +S+T 
Sbjct: 16  QEGQLHLARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKCDSYTY 75

Query: 75  VGVLVAAAGLQNLELARSIH-------------------------------GLMV----K 99
             VL A A  +NL + +++H                               G MV    +
Sbjct: 76  SSVLKACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYSR 135

Query: 100 FGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
             L   +F+ ++   +V+ N ++A ++  + + +AV  F+     G+ P+ V+ + V   
Sbjct: 136 CDLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPA 195

Query: 160 CVALGSRALCELIHGLTIKLG--LILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
             +LG      ++HG+ +KLG   + D+ V +S + MY+ L  L+ A ++F     ++  
Sbjct: 196 FSSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTE 255

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSR-IICDTVALLNLISVNAILGDLKRGKQLHAQ 276
            W  M+  FV   ++ + +++F +  +S     D V LL+ IS  + L   +  +QLHA 
Sbjct: 256 VWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQLHAF 315

Query: 277 VVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
           V+     +++ + N++IAMYS+C  +D+S  +F+ + EK +VSW  +IS +VQNG   EA
Sbjct: 316 VIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEA 375

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
           L  F +M+++    VDS+T+ ++L+A+ +L   +I  Q HG     G  ++  + + LI 
Sbjct: 376 LMLFYEMKKQDL-MVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGI-QFEGMDSYLID 433

Query: 397 SYSKCGNVDLAYIVFEE-MGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
            Y+K G ++ A  VFE+     RD  +WN+++ GY  NG  + A  +  +M +   +P+ 
Sbjct: 434 MYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNV 493

Query: 456 STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAG 515
            T  SIL AC  +G  + G  +    I  N +  +      ++D+ +++G ++ A  +  
Sbjct: 494 VTLASILPACNPSGYIDWGKQLHGFSI-RNDLDQNVFVATALIDMYSKSGSIAHAENVFS 552

Query: 516 KLLE 519
           K  E
Sbjct: 553 KANE 556



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 113/452 (25%), Positives = 216/452 (47%), Gaps = 21/452 (4%)

Query: 99  KFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSG--LVPNAVTMLTV 156
           +  L   LF+ L  P  V  N I+ G + N    +A+L ++  + S   +  ++ T  +V
Sbjct: 19  QLHLARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKCDSYTYSSV 78

Query: 157 IRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDL-------------DA 203
           ++ C    +  + + +H   ++  +     V NS+L+MYS                  D 
Sbjct: 79  LKACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYSRCDL 138

Query: 204 AIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAI 263
             ++F  M  + V++W  ++  +V  E   +A+K F  M K  I    V+ +N+    + 
Sbjct: 139 VRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAFSS 198

Query: 264 LGDLKRGKQLHAQVVLGGLQ--SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWT 321
           LGD K    +H  +V  G +  ++L + +S I MY++ G L+ ++ VF+   E++   W 
Sbjct: 199 LGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTEVWN 258

Query: 322 AIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFE 381
            +IS +VQN  + E +  F +  + +  ++D +TL+S ++A+  L   E+  QLH    +
Sbjct: 259 TMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQLHAFVIK 318

Query: 382 AGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALA 441
                   V N LI+ YS+C ++D ++ +F+ M   +DVVSWNT+I  +  NG  + AL 
Sbjct: 319 NVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMP-EKDVVSWNTMISAFVQNGLNDEALM 377

Query: 442 LYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLL 501
           L+++M +   + DS T  ++L+A       + G      ++         + Y  ++D+ 
Sbjct: 378 LFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFEGMDSY--LIDMY 435

Query: 502 ARAGCLSDASGLAGK-LLEGMGPNIWRALLSG 532
           A++G +  A  +  K          W +++SG
Sbjct: 436 AKSGLIEAAQNVFEKSFSHERDQATWNSMMSG 467



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 113/495 (22%), Positives = 228/495 (46%), Gaps = 45/495 (9%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  S  +  Y + G ++ A+ +FD   E+N   W+ +I  +  N F  + ++ F   +
Sbjct: 222 DLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTEVWNTMISAFVQNNFSLEGIQLFFQAV 281

Query: 64  LS-GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK----------------------F 100
            S     +  T++  + AA+ LQ  ELA  +H  ++K                       
Sbjct: 282 ESEDAAIDEVTLLSAISAASHLQKFELAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSI 341

Query: 101 GLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +F+ +    +VS N +++ F+ N L  +A++LF   +   L+ ++VT+  ++   
Sbjct: 342 DTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAA 401

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFRE--MECKDVIS 218
             L +  + +  HG  ++ G+  +  +++ ++DMY+    ++AA  +F +     +D  +
Sbjct: 402 SDLRNPDIGKQTHGYLLRNGIQFE-GMDSYLIDMYAKSGLIEAAQNVFEKSFSHERDQAT 460

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           W  MM  +        A  I R+M   +++ + V L +++      G +  GKQLH   +
Sbjct: 461 WNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTLASILPACNPSGYIDWGKQLHGFSI 520

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
              L   + ++ ++I MYSK G +  + +VF++  EKS+V+++ +I GY Q+G    AL 
Sbjct: 521 RNDLDQNVFVATALIDMYSKSGSIAHAENVFSKANEKSIVTYSTMILGYGQHGMGESALF 580

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN------ 392
            F +M++      D++TLV++L+A      ++  LQ+        F   R+V N      
Sbjct: 581 MFHRMQKSGIQP-DAVTLVAVLSACSYAGLVDEGLQI--------FESMRTVYNIQPSTE 631

Query: 393 ---CLISSYSKCGNVDLAYIVFEEMGFLRDVVS-WNTIIYGYGVNGHGETALALYHKMTE 448
              C+     + G VD AY     +G   +V+  W +++    ++   E    +  K+ E
Sbjct: 632 HFCCVADMLGRAGRVDKAYEFVIGLGEKGNVMEIWGSLLAACRIHKQFELGKLVAKKLLE 691

Query: 449 TGEVPDSSTYLSILN 463
             ++   + Y  +L+
Sbjct: 692 MEKINGKTGYHVLLS 706



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 98/255 (38%), Gaps = 27/255 (10%)

Query: 300 GDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD-SVDSITLVS 358
           G L  +R +F+ +   S V W  II G V N    EAL  +  M+        DS T  S
Sbjct: 18  GQLHLARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKCDSYTYSS 77

Query: 359 ILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV-------------D 405
           +L A  +   L +   +H           R V N L++ YS C +              D
Sbjct: 78  VLKACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYSRCD 137

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
           L   VF+ M   R VV+WNT+I  Y        A+  +  M + G  P   +++++  A 
Sbjct: 138 LVRKVFDTMR-KRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAF 196

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEH------YGCVVDLLARAGCLSDASGLAGKLLE 519
              G   +  V+   +     VK   E+          + + A  GCL  A  +    LE
Sbjct: 197 SSLGDFKNANVVHGML-----VKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLE 251

Query: 520 GMGPNIWRALLSGCV 534
                +W  ++S  V
Sbjct: 252 -RNTEVWNTMISAFV 265


>gi|242037437|ref|XP_002466113.1| hypothetical protein SORBIDRAFT_01g001570 [Sorghum bicolor]
 gi|241919967|gb|EER93111.1| hypothetical protein SORBIDRAFT_01g001570 [Sorghum bicolor]
          Length = 693

 Score =  259 bits (661), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 171/560 (30%), Positives = 272/560 (48%), Gaps = 33/560 (5%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  D     K L    KSG++ +A +LFD +P KNVV+W+  I G + NG  E +   F+
Sbjct: 38  PPPDVVLDCKRLDALMKSGRLSDALDLFDRMPRKNVVAWTTAISGCTRNGQPEAAAAMFA 97

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNL--ELARSIHGLMVKFGLESD------------- 105
            M+ SG+  N F     L A A        L   +H L V+ G  +D             
Sbjct: 98  DMLESGVAANDFACNAALAACAAAGAGALSLGEQVHSLAVRAGFAADAWIGSCLIELYSR 157

Query: 106 ---------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTV 156
                    +F  ++ P +V   ++V+    N    +AV +       GL PN  TM ++
Sbjct: 158 CGSMWAAEEVFRRMEAPDVVGYTSLVSALCRNGDLARAVEVLCQMMRQGLQPNEHTMTSM 217

Query: 157 IRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
           +  C     R + E IHG  +K+     V  + +++D YS   D D A  +F  ++ K+V
Sbjct: 218 LAEC----PRMIGEQIHGYMLKVMGSQSVYASTALIDFYSRYGDFDMAETVFENLDSKNV 273

Query: 217 ISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQ 276
           +SW  MM L +      DAL++F EM    +  +  A    I++ A  G +  G+Q+H  
Sbjct: 274 VSWCSMMQLCIRDGRLEDALRVFSEMISEAVEPNEFAFS--IALGAC-GSVCLGRQIHCS 330

Query: 277 VVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
            +   L +++R+SN++++MY + G +    +V  +I    LVSWTA IS   QNG + +A
Sbjct: 331 AIKCNLMTDIRVSNALLSMYGRSGFVSEVEAVLGKIENPDLVSWTAAISANFQNGFSEKA 390

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
           +   ++M  E     D     S L++  +LA L+   QLH +A + G        N LI+
Sbjct: 391 VALLLQMHSEGFTPND-YAFSSGLSSCADLALLDQGRQLHCLALKLGCDFKVCTGNALIN 449

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
            YSKCG +  A + F+ M  L DV+SWN++I+G   +G     L  + +M  +G  PD S
Sbjct: 450 MYSKCGQIGSARLAFDVMN-LHDVMSWNSLIHGLAQHGAANLVLEAFSEMCSSGWQPDDS 508

Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK 516
           T++++L  C HAGL  +G   F  M +   + P+  HY C++D+L R G   +A  +   
Sbjct: 509 TFIAVLVGCNHAGLVKEGETFFRLMTDRYGLTPTPSHYACMIDMLGRNGRFDEALHMIKN 568

Query: 517 LLEGMGPNIWRALLSGCVLH 536
           +       IW+ LL+ C LH
Sbjct: 569 MPFEPDVLIWKTLLASCKLH 588



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 117/485 (24%), Positives = 210/485 (43%), Gaps = 36/485 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  S L+  Y + G +  AE +F  +   +VV ++ ++     NG   ++++    MM
Sbjct: 144 DAWIGSCLIELYSRCGSMWAAEEVFRRMEAPDVVGYTSLVSALCRNGDLARAVEVLCQMM 203

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK----------------------FG 101
             GL PN  TM  +L     +    +   IHG M+K                      F 
Sbjct: 204 RQGLQPNEHTMTSMLAECPRM----IGEQIHGYMLKVMGSQSVYASTALIDFYSRYGDFD 259

Query: 102 LESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
           +   +FE L +  +VS  +++   I +   + A+ +F+      + PN       +  C 
Sbjct: 260 MAETVFENLDSKNVVSWCSMMQLCIRDGRLEDALRVFSEMISEAVEPNEFAFSIALGAC- 318

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
             GS  L   IH   IK  L+ D+ V+N++L MY     +     +  ++E  D++SWT 
Sbjct: 319 --GSVCLGRQIHCSAIKCNLMTDIRVSNALLSMYGRSGFVSEVEAVLGKIENPDLVSWTA 376

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
            +       ++  A+ +  +M       +  A  + +S  A L  L +G+QLH   +  G
Sbjct: 377 AISANFQNGFSEKAVALLLQMHSEGFTPNDYAFSSGLSSCADLALLDQGRQLHCLALKLG 436

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
              ++   N++I MYSKCG + S+R  F+ +    ++SW ++I G  Q+G A   L  F 
Sbjct: 437 CDFKVCTGNALINMYSKCGQIGSARLAFDVMNLHDVMSWNSLIHGLAQHGAANLVLEAFS 496

Query: 342 KMRQEKTDSVDSITLVSILTA---SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
           +M        DS T +++L     +G +   E   +L    +  G     S   C+I   
Sbjct: 497 EMCSSGWQPDDS-TFIAVLVGCNHAGLVKEGETFFRLMTDRY--GLTPTPSHYACMIDML 553

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
            + G  D A  + + M F  DV+ W T++    ++ + +       K+ E  E  DS++Y
Sbjct: 554 GRNGRFDEALHMIKNMPFEPDVLIWKTLLASCKLHKNLDIGKLATDKLMELSE-RDSASY 612

Query: 459 LSILN 463
           + + N
Sbjct: 613 VLMSN 617


>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
 gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1067

 Score =  259 bits (661), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 173/568 (30%), Positives = 296/568 (52%), Gaps = 38/568 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  S L+S + K+G I  A+N+F ++  +NVVS + +I G       E++++ F  M 
Sbjct: 318 DLYVGSALVSGFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEMK 377

Query: 64  LS-GLLPNSFTMVGVLVAAAGLQNLELAR----SIHGLMVKFGLESD------------- 105
            S  L PNS+ ++  L A      LE  +     +H  +++ GL +              
Sbjct: 378 DSVELNPNSYMII--LTAFPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYA 435

Query: 106 ----------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLT 155
                     +F  + N   V+ N+++ G   NK F +AV  F   R + L P+  TM++
Sbjct: 436 KCGAINDACVVFRLMDNKDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMIS 495

Query: 156 VIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKD 215
            +  C +LG  ++ E +H   +KLGL LDVSV+N++L +Y     +    + F  M   D
Sbjct: 496 ALSSCASLGWISVGEQLHCEGLKLGLDLDVSVSNALLALYGECGYVKECQKAFSLMLDYD 555

Query: 216 VISWTRMMGLFVDFEYAG-DALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
            +SW  ++G   D E +  +A++ F  M ++    + V  + +++  + L   + GKQ+H
Sbjct: 556 HVSWNSLIGALADSEPSMLEAVESFLVMMRAGWDPNRVTFITILAAVSSLSLHELGKQIH 615

Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKS-LVSWTAIISGYVQNGCA 333
           A V+   + ++  + N+++A Y KCGD+    ++F++++++   VSW ++ISGY+ N   
Sbjct: 616 ALVLKRNVAADTAIENALLACYGKCGDMGYCENIFSRMSDRQDEVSWNSMISGYIHNELL 675

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC 393
            +A++    M Q K   +D  T  ++L+A   +A LE  +++HG +  A       + + 
Sbjct: 676 PKAMDMVWFMMQ-KGQRLDGFTFATVLSACATVATLERGMEVHGCSVRACLESDIVIGSA 734

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           L+  Y+KCG +D A   FE M   R++ SWN++I GY  +GHG  +L L+ +M   G +P
Sbjct: 735 LVDMYAKCGRIDYASRFFEMMP-ARNLYSWNSMISGYARHGHGTKSLDLFAQMKLQGPLP 793

Query: 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL 513
           D  T++ +L+AC HAGL N+G   F+ M E   + P  EH+ C+VDLL R G L+     
Sbjct: 794 DHVTFVGVLSACSHAGLVNEGFSHFDSMSEIYGLAPRMEHFSCMVDLLGRVGELNKMEDF 853

Query: 514 AGKLLEGMGPN--IWRALLSGCVLHVGR 539
             ++   + PN  IWR +L  C    GR
Sbjct: 854 LNQM--PVKPNVLIWRTVLGACCRANGR 879



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 138/524 (26%), Positives = 244/524 (46%), Gaps = 50/524 (9%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L++ Y + G +     +FDE+P +N+VSWS +I GY+ N    ++ + F  M+
Sbjct: 107 DLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGYTRNRMPNEACELFRKMV 166

Query: 64  LSGLLPNSFTMVGVLVAA--AGLQNLELARSIHGLMVKFGLESDL--------------- 106
             G +PN +    V+ A    G   L+    IHGLM K    +D+               
Sbjct: 167 SDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVNDVTASNVLISMYGNALG 226

Query: 107 --------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFR-------GSGLVPNAV 151
                   F+ +    LVS N++++ +        AV  F+ F        G GL PN  
Sbjct: 227 MVDYARRAFDSIWPRNLVSLNSMISVYCQRG---DAVSAFDIFSTMQKEVMGDGLKPNEY 283

Query: 152 TMLTVIRGCVALGSRALCELIHGLTI--KLGLILDVSVNNSVLDMYSCLMDLDAAIQIFR 209
           T  ++I    +L +  L  L   LT   K G + D+ V ++++  ++    +  A  IF+
Sbjct: 284 TFGSLISATCSLANSGLVLLEQLLTRVEKSGFLHDLYVGSALVSGFAKAGSIGYAKNIFQ 343

Query: 210 EMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNA--ILGDL 267
           +M  ++V+S   ++   V  +   +A+++F EM+ S  +     ++ L +     +L + 
Sbjct: 344 KMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEMKDSVELNPNSYMIILTAFPEFHVLENG 403

Query: 268 KR-GKQLHAQVVLGG-LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIIS 325
           KR G ++HA ++  G L +++ + N +I MY+KCG ++ +  VF  +  K  V+W ++I+
Sbjct: 404 KRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACVVFRLMDNKDSVTWNSMIT 463

Query: 326 GYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFP 385
           G  QN    EA+  F +MR+ +     + T++S L++   L  + +  QLH    + G  
Sbjct: 464 GLDQNKQFLEAVKTFQEMRRTELYP-SNFTMISALSSCASLGWISVGEQLHCEGLKLGLD 522

Query: 386 RYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGET----ALA 441
              SV N L++ Y +CG V      F  M    D VSWN++I   G     E     A+ 
Sbjct: 523 LDVSVSNALLALYGECGYVKECQKAFSLM-LDYDHVSWNSLI---GALADSEPSMLEAVE 578

Query: 442 LYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEEN 485
            +  M   G  P+  T+++IL A     L   G  I   +++ N
Sbjct: 579 SFLVMMRAGWDPNRVTFITILAAVSSLSLHELGKQIHALVLKRN 622



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 96/386 (24%), Positives = 192/386 (49%), Gaps = 37/386 (9%)

Query: 170 ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDF 229
           E +H    K G + D+ + N+++++Y+ + DL +  ++F EM  ++++SW+ ++  +   
Sbjct: 93  EELHLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGYTRN 152

Query: 230 EYAGDALKIFREMRKSRIICDTVALLNLISVNAILGD--LKRGKQLHAQVVLGGLQSELR 287
               +A ++FR+M     + +  A  ++I      G+  LK G Q+H  +      +++ 
Sbjct: 153 RMPNEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVNDVT 212

Query: 288 LSNSIIAMYSKC-GDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            SN +I+MY    G +D +R  F+ I  ++LVS  ++IS Y Q G A  A + F  M++E
Sbjct: 213 ASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTMQKE 272

Query: 347 KTD---SVDSITLVSILTASGELA--ALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
                   +  T  S+++A+  LA   L +  QL     ++GF     V + L+S ++K 
Sbjct: 273 VMGDGLKPNEYTFGSLISATCSLANSGLVLLEQLLTRVEKSGFLHDLYVGSALVSGFAKA 332

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G++  A  +F++M + R+VVS N +I G      GE A+ L+ +M ++ E+ + ++Y+ I
Sbjct: 333 GSIGYAKNIFQKMSY-RNVVSLNGLIIGLVRQKRGEEAVELFMEMKDSVEL-NPNSYMII 390

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCV---------------VDLLARAGC 506
           L A                ++E  K K S+ H   +               +++ A+ G 
Sbjct: 391 LTAFPEF-----------HVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGA 439

Query: 507 LSDASGLAGKLLEGMGPNIWRALLSG 532
           ++DA  +  +L++      W ++++G
Sbjct: 440 INDAC-VVFRLMDNKDSVTWNSMITG 464



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 93/415 (22%), Positives = 192/415 (46%), Gaps = 46/415 (11%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSM----KAFSHMM 63
           S+ LL+ Y + G +KE +  F  + + + VSW+ +I   + +   E SM    ++F  MM
Sbjct: 528 SNALLALYGECGYVKECQKAFSLMLDYDHVSWNSLIGALADS---EPSMLEAVESFLVMM 584

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYL-------- 115
            +G  PN  T + +L A + L   EL + IH L++K  + +D    ++N  L        
Sbjct: 585 RAGWDPNRVTFITILAAVSSLSLHELGKQIHALVLKRNVAAD--TAIENALLACYGKCGD 642

Query: 116 -----------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                            VS N++++G+I+N+L  +A+ +  F    G   +  T  TV+ 
Sbjct: 643 MGYCENIFSRMSDRQDEVSWNSMISGYIHNELLPKAMDMVWFMMQKGQRLDGFTFATVLS 702

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C  + +      +HG +++  L  D+ + ++++DMY+    +D A + F  M  +++ S
Sbjct: 703 ACATVATLERGMEVHGCSVRACLESDIVIGSALVDMYAKCGRIDYASRFFEMMPARNLYS 762

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG-KQLHAQV 277
           W  M+  +    +   +L +F +M+    + D V  + ++S  +  G +  G     +  
Sbjct: 763 WNSMISGYARHGHGTKSLDLFAQMKLQGPLPDHVTFVGVLSACSHAGLVNEGFSHFDSMS 822

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK-SLVSWTAIISGYVQ-NG---- 331
            + GL   +   + ++ +  + G+L+      NQ+  K +++ W  ++    + NG    
Sbjct: 823 EIYGLAPRMEHFSCMVDLLGRVGELNKMEDFLNQMPVKPNVLIWRTVLGACCRANGRNTA 882

Query: 332 CAREALNQFIKMRQEKTDSVDSITLVSILTASG---ELAALEICLQLHGIAFEAG 383
             R A    ++M  E T++V+ I L ++  + G   ++A   + ++   +  EAG
Sbjct: 883 LGRRAAEMLLEM--EPTNAVNYILLSNMYASGGKWDDVAKTRVAMRKAFVKKEAG 935



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 116/222 (52%), Gaps = 11/222 (4%)

Query: 268 KRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGY 327
           K  ++LH Q+   G  ++L L N++I +Y++ GDL S R VF+++  ++LVSW+ +ISGY
Sbjct: 90  KDAEELHLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGY 149

Query: 328 VQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELA--ALEICLQLHGIAFEAGFP 385
            +N    EA   F KM  +     +     S++ A  E     L+  +Q+HG+  +  + 
Sbjct: 150 TRNRMPNEACELFRKMVSDGF-MPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYV 208

Query: 386 RYRSVQNCLISSYSKC-GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH 444
              +  N LIS Y    G VD A   F+ + + R++VS N++I  Y   G   +A  ++ 
Sbjct: 209 NDVTASNVLISMYGNALGMVDYARRAFDSI-WPRNLVSLNSMISVYCQRGDAVSAFDIFS 267

Query: 445 KMTET----GEVPDSSTYLSILNACGHAGLTNDGLVIFNQMI 482
            M +     G  P+  T+ S+++A     L N GLV+  Q++
Sbjct: 268 TMQKEVMGDGLKPNEYTFGSLISAT--CSLANSGLVLLEQLL 307


>gi|302757275|ref|XP_002962061.1| hypothetical protein SELMODRAFT_76226 [Selaginella moellendorffii]
 gi|300170720|gb|EFJ37321.1| hypothetical protein SELMODRAFT_76226 [Selaginella moellendorffii]
          Length = 847

 Score =  259 bits (661), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 171/563 (30%), Positives = 287/563 (50%), Gaps = 45/563 (7%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           LL+ Y K+G + E+ +LF  +  KNVV+WS ++  Y+ NG HE +++ F  M+L G+ PN
Sbjct: 248 LLNFYAKAGLVHESRSLFSSMKVKNVVTWSAIVAAYAQNGHHEPAVELFREMLLDGVAPN 307

Query: 71  SFTMVGVLVAA--AGL-QNLELARSIHGLMVKF--------------------GLESD-- 105
             T V +L +   AGL ++L   R IH  ++K                     G  SD  
Sbjct: 308 KVTFVSLLFSCSHAGLIKDLARGRKIHAEILKSTAAAGDVVVATALVNMYGRCGSVSDAK 367

Query: 106 -LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFR-----GSGLVPNAVTMLTVIRG 159
            +F+ +++  + S NA++  +    L Q+++    FFR     G G+ P+A+T ++    
Sbjct: 368 TVFDEMQHRNITSWNAMLVTY---SLNQRSLEALRFFRTMLLEGEGVKPDAITFVSAADA 424

Query: 160 CVALGSRALCELIHGLTIK--LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
           C  +G  +    IH    +       DV + ++++ MY     L  A Q+  +M   +VI
Sbjct: 425 CGMMGDLSRAVEIHSRISQSWPSNQTDVVLGSALIKMYGNCRRLADAAQVLDQMPRTNVI 484

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           SWT M+      E    A++++R M+      D V ++ +I   A L DLKRG + HAQ 
Sbjct: 485 SWTSMILACEQNEDNEAAIRVYRAMQLHGHKPDPVTMVTVIKAAANLHDLKRGIEFHAQA 544

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSL---VSWTAIISGYVQNGCAR 334
              G  +   + N+++ +Y   GDL ++ +VF ++ ++S+   V+W +++S + QNG   
Sbjct: 545 AAFGFATSTVVGNALVTLYGTSGDLQAAENVFKELLQQSVEDVVTWNSMLSAWNQNGLPN 604

Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTA-SGELAALEICLQLHGIAFEAGFPRYRSVQNC 393
           +AL  F +M        D  T V+IL A +G+ + L   +++H +A   G      V N 
Sbjct: 605 QALGTFQRMLHHGRHP-DKTTFVNILNACAGDPSKLLQGVKIHALAAACGLDSDIDVANT 663

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           L+  YS+CGN+  A  VF  +   ++VVSW+ +      NG  + AL  +  M   G  P
Sbjct: 664 LLHMYSRCGNLSRARKVFHALT-QKNVVSWSAMAAACAHNGDADGALQAFRGMLHGGIQP 722

Query: 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL 513
           ++ T++SIL+ C H GL ++ +     M  ++ +KP+ +HY C++DLLARAG    A  L
Sbjct: 723 NAVTFISILSGCSHTGLMDEAVSYLYAMSSDHNLKPTVQHYACLLDLLARAGKFHRAEEL 782

Query: 514 AGKLLEGMGPNIWRALLSGCVLH 536
           A  L     P  W +LL  C++H
Sbjct: 783 ATHL---PNPVAWNSLLGACLVH 802



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 117/503 (23%), Positives = 242/503 (48%), Gaps = 42/503 (8%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + L+  Y +   + +A  +F  +  KNV +W+I+I  ++ NG   ++++ F  M 
Sbjct: 29  DRYLCNLLIQMYGRCRSVHDAIAVFHTVSRKNVFTWTILIVAHTHNGLFFEAVELFREMD 88

Query: 64  LSGLLPNSFTMVGVLVAAA--GLQNLELARSIHGLMVKFGLE------------------ 103
           + G+  + FT   +L A +  GL  L L ++IH  + + GL+                  
Sbjct: 89  VHGVQSDEFTFSAILEACSNLGLAFLSLGKTIHSRIHQQGLKLTSNPTVICSTAMIDAYA 148

Query: 104 --------SDLFEGLK----NPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAV 151
                   +++FE ++    +P L++  A++  +      ++A+LLF      GL P+  
Sbjct: 149 QNGHIEQAAEIFERMQLQVLDPDLIAWTAMMTAYNQLGHAREALLLFRKMDLQGLEPDRF 208

Query: 152 TMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM 211
             +  I  C ++ S     ++H   +   +  D  V N++L+ Y+    +  +  +F  M
Sbjct: 209 AFVAAIDACSSIPSLEQGTVLHSRLLASSVECDGVVGNALLNFYAKAGLVHESRSLFSSM 268

Query: 212 ECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLI---SVNAILGDLK 268
           + K+V++W+ ++  +    +   A+++FREM    +  + V  ++L+   S   ++ DL 
Sbjct: 269 KVKNVVTWSAIVAAYAQNGHHEPAVELFREMLLDGVAPNKVTFVSLLFSCSHAGLIKDLA 328

Query: 269 RGKQLHAQVVLGGLQS-ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGY 327
           RG+++HA+++     + ++ ++ +++ MY +CG +  +++VF+++  +++ SW A++  Y
Sbjct: 329 RGRKIHAEILKSTAAAGDVVVATALVNMYGRCGSVSDAKTVFDEMQHRNITSWNAMLVTY 388

Query: 328 VQNGCAREALNQFIKMRQEKTD-SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPR 386
             N  + EAL  F  M  E      D+IT VS   A G +  L   +++H       +P 
Sbjct: 389 SLNQRSLEALRFFRTMLLEGEGVKPDAITFVSAADACGMMGDLSRAVEIHS-RISQSWPS 447

Query: 387 YRS---VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALY 443
            ++   + + LI  Y  C  +  A  V ++M    +V+SW ++I     N   E A+ +Y
Sbjct: 448 NQTDVVLGSALIKMYGNCRRLADAAQVLDQMP-RTNVISWTSMILACEQNEDNEAAIRVY 506

Query: 444 HKMTETGEVPDSSTYLSILNACG 466
             M   G  PD  T ++++ A  
Sbjct: 507 RAMQLHGHKPDPVTMVTVIKAAA 529



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 108/423 (25%), Positives = 200/423 (47%), Gaps = 40/423 (9%)

Query: 85  QNLELARSIHGLMVKFGLESD----------------------LFEGLKNPYLVSCNAIV 122
           +NL+  R++H  M+  G   D                      +F  +    + +   ++
Sbjct: 9   KNLDAGRAVHLQMITSGYHRDRYLCNLLIQMYGRCRSVHDAIAVFHTVSRKNVFTWTILI 68

Query: 123 AGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG------SRALCELIHGLT 176
               +N LF +AV LF      G+  +  T   ++  C  LG       + +   IH   
Sbjct: 69  VAHTHNGLFFEAVELFREMDVHGVQSDEFTFSAILEACSNLGLAFLSLGKTIHSRIHQQG 128

Query: 177 IKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK----DVISWTRMMGLFVDFEYA 232
           +KL     V  + +++D Y+    ++ A +IF  M+ +    D+I+WT MM  +    +A
Sbjct: 129 LKLTSNPTVICSTAMIDAYAQNGHIEQAAEIFERMQLQVLDPDLIAWTAMMTAYNQLGHA 188

Query: 233 GDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSI 292
            +AL +FR+M    +  D  A +  I   + +  L++G  LH++++   ++ +  + N++
Sbjct: 189 REALLLFRKMDLQGLEPDRFAFVAAIDACSSIPSLEQGTVLHSRLLASSVECDGVVGNAL 248

Query: 293 IAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVD 352
           +  Y+K G +  SRS+F+ +  K++V+W+AI++ Y QNG    A+  F +M  +   + +
Sbjct: 249 LNFYAKAGLVHESRSLFSSMKVKNVVTWSAIVAAYAQNGHHEPAVELFREMLLDGV-APN 307

Query: 353 SITLVSIL---TASGELAALEICLQLHG-IAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
            +T VS+L   + +G +  L    ++H  I           V   L++ Y +CG+V  A 
Sbjct: 308 KVTFVSLLFSCSHAGLIKDLARGRKIHAEILKSTAAAGDVVVATALVNMYGRCGSVSDAK 367

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE--VPDSSTYLSILNACG 466
            VF+EM   R++ SWN ++  Y +N     AL  +  M   GE   PD+ T++S  +ACG
Sbjct: 368 TVFDEMQH-RNITSWNAMLVTYSLNQRSLEALRFFRTMLLEGEGVKPDAITFVSAADACG 426

Query: 467 HAG 469
             G
Sbjct: 427 MMG 429



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 125/277 (45%), Gaps = 26/277 (9%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           S L+  Y    ++ +A  + D++P  NV+SW+ +I     N  +E +++ +  M L G  
Sbjct: 456 SALIKMYGNCRRLADAAQVLDQMPRTNVISWTSMILACEQNEDNEAAIRVYRAMQLHGHK 515

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------FEGLKNP 113
           P+  TMV V+ AAA L +L+     H     FG  +                  +  +N 
Sbjct: 516 PDPVTMVTVIKAAANLHDLKRGIEFHAQAAAFGFATSTVVGNALVTLYGTSGDLQAAENV 575

Query: 114 Y----------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
           +          +V+ N++++ +  N L  QA+  F      G  P+  T + ++  C   
Sbjct: 576 FKELLQQSVEDVVTWNSMLSAWNQNGLPNQALGTFQRMLHHGRHPDKTTFVNILNACAGD 635

Query: 164 GSRALCEL-IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
            S+ L  + IH L    GL  D+ V N++L MYS   +L  A ++F  +  K+V+SW+ M
Sbjct: 636 PSKLLQGVKIHALAAACGLDSDIDVANTLLHMYSRCGNLSRARKVFHALTQKNVVSWSAM 695

Query: 223 MGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLIS 259
                    A  AL+ FR M    I  + V  ++++S
Sbjct: 696 AAACAHNGDADGALQAFRGMLHGGIQPNAVTFISILS 732



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           ID  N+  LL  Y + G +  A  +F  + +KNVVSWS +    + NG  + +++AF  M
Sbjct: 658 IDVANT--LLHMYSRCGNLSRARKVFHALTQKNVVSWSAMAAACAHNGDADGALQAFRGM 715

Query: 63  MLSGLLPNSFTMVGVL 78
           +  G+ PN+ T + +L
Sbjct: 716 LHGGIQPNAVTFISIL 731


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  259 bits (661), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 164/535 (30%), Positives = 270/535 (50%), Gaps = 29/535 (5%)

Query: 24  AENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAG 83
           A  LF    + +V  W+  +  Y   G   +++  F  M+ S +  +S T + +L   A 
Sbjct: 250 ATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVAS 309

Query: 84  LQNLELARSIHGLMVKFGLES----------------------DLFEGLKNPYLVSCNAI 121
           L +LEL + IHG +V+FG +                        +F  +K   L+S N +
Sbjct: 310 LNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTV 369

Query: 122 VAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG-SRALCELIHGLTIKLG 180
           ++G   + L + ++ LF     SGL+P+  T+ +V+R C +L  S  +   +H   +K G
Sbjct: 370 ISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAG 429

Query: 181 LILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFR 240
           ++LD  V+ +++D+YS    ++ A  +F   +  D+ SW  MM  F   +   +AL++F 
Sbjct: 430 IVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFS 489

Query: 241 EMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCG 300
            M +     D +   N       L  L++GKQ+HA V+      +L + + I+ MY KCG
Sbjct: 490 LMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCG 549

Query: 301 DLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSIL 360
           ++ S+R VFNQI     V+WT +ISG V+NG   +AL  + +MR       D  T  +++
Sbjct: 550 EMKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQP-DEYTFATLV 608

Query: 361 TASGELAALEICLQLHG--IAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLR 418
            A   L ALE   Q+H   +     F  +  V   L+  Y+KCGN++ AY +F  M   R
Sbjct: 609 KACSLLTALEQGKQIHANIMKLNCAFDPF--VMTSLVDMYAKCGNIEDAYGLFRRMN-TR 665

Query: 419 DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIF 478
            V  WN +I G   +G+ E AL  +++M   G  PD  T++ +L+AC H+GLT+D    F
Sbjct: 666 SVALWNAMIVGLAQHGNAEEALNFFNEMKSRGVTPDRVTFIGVLSACSHSGLTSDAYKNF 725

Query: 479 NQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGC 533
           + M +   V+P  EHY C+VD L+RAG + +A  +   +       ++R LL+ C
Sbjct: 726 DSMQKTYGVEPEIEHYSCLVDALSRAGHIQEAEKVVSSMPFEASATMYRTLLNAC 780



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 128/506 (25%), Positives = 238/506 (47%), Gaps = 39/506 (7%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTM 74
           Y K+G +  A  +F ++ E +++SW+ VI G + +G  E S++ F  ++ SGLLP+ FT+
Sbjct: 342 YVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTI 401

Query: 75  VGVLVAAAGLQ-NLELARSIHGLMVKFGLESD----------------------LFEGLK 111
             VL A + L+ +  + R +H   +K G+  D                      LF    
Sbjct: 402 TSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQD 461

Query: 112 NPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCEL 171
              L S NA++ GF  +  +++A+ LF+     G   + +T     +    L      + 
Sbjct: 462 GFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQ 521

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           IH + IK+    D+ V + +LDMY    ++ +A ++F ++   D ++WT ++   V+   
Sbjct: 522 IHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGE 581

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
              AL  + +MR + +  D      L+   ++L  L++GKQ+HA ++      +  +  S
Sbjct: 582 EEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFVMTS 641

Query: 292 IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
           ++ MY+KCG+++ +  +F ++  +S+  W A+I G  Q+G A EALN F +M+     + 
Sbjct: 642 LVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAEEALNFFNEMKSRGV-TP 700

Query: 352 DSITLVSILTA-------SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
           D +T + +L+A       S      +   + +G+  E     Y    +CL+ + S+ G++
Sbjct: 701 DRVTFIGVLSACSHSGLTSDAYKNFDSMQKTYGV--EPEIEHY----SCLVDALSRAGHI 754

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
             A  V   M F      + T++    V G  ET   +  K+  T +  DS+ Y+ + N 
Sbjct: 755 QEAEKVVSSMPFEASATMYRTLLNACRVQGDKETGERVAEKLF-TMDPSDSAAYVLLSNI 813

Query: 465 CGHAGLTNDGLVIFNQMIEEN-KVKP 489
              A    + +   N M   N K +P
Sbjct: 814 YAAANQWENAVSARNMMKRVNVKKEP 839



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 135/535 (25%), Positives = 253/535 (47%), Gaps = 12/535 (2%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + +  L++ Y K  +I+EA  LFD +P ++VV W++++  Y   G  ++ +  FS   
Sbjct: 156 DVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFH 215

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVA 123
            SGL P+  ++  +L+        E  R +  +       + LF    +  +   N  ++
Sbjct: 216 RSGLRPDCVSVRTILMGVGKKTVFE--RELEQVR---AYATKLFVCDDDSDVTVWNKTLS 270

Query: 124 GFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLIL 183
            ++      +AV  F     S +  +++T + ++    +L    L + IHG  ++ G   
Sbjct: 271 SYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFGWDQ 330

Query: 184 DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMR 243
            VSV NS ++MY     ++ A ++F +M+  D+ISW  ++           +L++F ++ 
Sbjct: 331 FVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLL 390

Query: 244 KSRIICDTVALLNLISVNAILGD-LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDL 302
           +S ++ D   + +++   + L +    G+Q+H   +  G+  +  +S ++I +YSK G +
Sbjct: 391 RSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKM 450

Query: 303 DSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTA 362
           + +  +F+      L SW A++ G+  +   REAL  F  M  E+ +  D IT  +   A
Sbjct: 451 EEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLM-HERGEKADQITFANAAKA 509

Query: 363 SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVS 422
           +G L  L+   Q+H +  +  F     V + ++  Y KCG +  A  VF ++    D V+
Sbjct: 510 AGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDD-VA 568

Query: 423 WNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMI 482
           W T+I G   NG  E AL  YH+M   G  PD  T+ +++ AC        G  I   ++
Sbjct: 569 WTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIM 628

Query: 483 EEN-KVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
           + N    P       +VD+ A+ G + DA GL  + +      +W A++ G   H
Sbjct: 629 KLNCAFDPFV--MTSLVDMYAKCGNIEDAYGLFRR-MNTRSVALWNAMIVGLAQH 680



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 150/575 (26%), Positives = 257/575 (44%), Gaps = 88/575 (15%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPE--KNVVSWSIVIHGYSING-FH--EKSMKA 58
           D Y ++ L++ Y K G +  A  LFD  P+  +++V+++ ++  Y+  G  H  EK+ +A
Sbjct: 47  DRYVTNNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAILAAYAHTGELHDVEKTHEA 106

Query: 59  FSHMML---SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNP 113
           F    L   S +L    T+  +        +   + ++ G  VK GL+ D+F    L N 
Sbjct: 107 FHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGYAVKIGLQWDVFVAGALVNI 166

Query: 114 Y--------------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTM 153
           Y                    +V  N ++  ++      + + LF+ F  SGL P+ V++
Sbjct: 167 YAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRPDCVSV 226

Query: 154 LTVIRGCVALGSRAL----CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFR 209
            T++ G   +G + +     E +     KL +  D S                       
Sbjct: 227 RTILMG---VGKKTVFERELEQVRAYATKLFVCDDDS----------------------- 260

Query: 210 EMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKR 269
                DV  W + +  ++      +A+  FR+M KSR+ CD++  + ++SV A L  L+ 
Sbjct: 261 -----DVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLEL 315

Query: 270 GKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQ 329
           GKQ+H  VV  G    + ++NS I MY K G ++ +R +F Q+ E  L+SW  +ISG  +
Sbjct: 316 GKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCAR 375

Query: 330 NGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICL--QLHGIAFEAGFPRY 387
           +G    +L  FI + +      D  T+ S+L A   L     C+  Q+H  A +AG    
Sbjct: 376 SGLEECSLRLFIDLLRSGLLP-DQFTITSVLRACSSLEE-SYCVGRQVHTCALKAGIVLD 433

Query: 388 RSVQNCLISSYSKCGNVDLAYIVFEEM-GFLRDVVSWNTIIYGYGVNGHGETALALYHKM 446
             V   LI  YSK G ++ A ++F    GF  D+ SWN +++G+ V+ +   AL L+  M
Sbjct: 434 SFVSTALIDVYSKGGKMEEAELLFHNQDGF--DLASWNAMMHGFTVSDNYREALRLFSLM 491

Query: 447 TETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGC-----VVDLL 501
            E GE  D  T+ +   A G       G  I   +I+       + HY       ++D+ 
Sbjct: 492 HERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIK------MRFHYDLFVISGILDMY 545

Query: 502 ARAGCLSDASGLAGKLLEGMGPN--IWRALLSGCV 534
            + G +  A  +  ++     P+   W  ++SGCV
Sbjct: 546 LKCGEMKSARKVFNQI---PSPDDVAWTTVISGCV 577



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 118/431 (27%), Positives = 193/431 (44%), Gaps = 62/431 (14%)

Query: 65  SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------LFE 108
           S LLP  F+   +L  A    +L L +  H ++V  GL  D                LF 
Sbjct: 10  SSLLPQWFS---ILRHAIADSDLILGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFS 66

Query: 109 GLK--------NPYLVSCNAIVAGFINN------KLFQQAVLLFNFFRGSGLVPNAVTML 154
             K        +  LV+ NAI+A + +       +   +A  +F   R S ++    T+ 
Sbjct: 67  ARKLFDITPQSDRDLVTYNAILAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLS 126

Query: 155 TVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
            + + C+  GS +  E + G  +K+GL  DV V  +++++Y+    +  A  +F  M  +
Sbjct: 127 PLFKLCLLYGSPSASEALQGYAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVR 186

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
           DV+ W  MM  +V+     + L +F    +S +  D V      SV  IL  +  GK+  
Sbjct: 187 DVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRPDCV------SVRTIL--MGVGKKT- 237

Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
                   + EL    +       C D DS  +V           W   +S Y+Q G   
Sbjct: 238 ------VFERELEQVRAYATKLFVCDD-DSDVTV-----------WNKTLSSYLQAGEGW 279

Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
           EA++ F  M + +    DS+T + IL+    L  LE+  Q+HG     G+ ++ SV N  
Sbjct: 280 EAVDCFRDMIKSRV-PCDSLTYIVILSVVASLNHLELGKQIHGAVVRFGWDQFVSVANSA 338

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           I+ Y K G+V+ A  +F +M  + D++SWNT+I G   +G  E +L L+  +  +G +PD
Sbjct: 339 INMYVKAGSVNYARRMFGQMKEV-DLISWNTVISGCARSGLEECSLRLFIDLLRSGLLPD 397

Query: 455 SSTYLSILNAC 465
             T  S+L AC
Sbjct: 398 QFTITSVLRAC 408



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 153/333 (45%), Gaps = 23/333 (6%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D + S+ L+  Y K GK++EAE LF      ++ SW+ ++HG++++  + ++++ FS M
Sbjct: 432 LDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLM 491

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPYL----- 115
              G   +  T      AA  L  L+  + IH +++K     DLF   G+ + YL     
Sbjct: 492 HERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEM 551

Query: 116 ---------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                          V+   +++G + N   +QA+  ++  R +G+ P+  T  T+++ C
Sbjct: 552 KSARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKAC 611

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             L +    + IH   +KL    D  V  S++DMY+   +++ A  +FR M  + V  W 
Sbjct: 612 SLLTALEQGKQIHANIMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVALWN 671

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG-KQLHAQVVL 279
            M+        A +AL  F EM+   +  D V  + ++S  +  G      K   +    
Sbjct: 672 AMIVGLAQHGNAEEALNFFNEMKSRGVTPDRVTFIGVLSACSHSGLTSDAYKNFDSMQKT 731

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQI 312
            G++ E+   + ++   S+ G +  +  V + +
Sbjct: 732 YGVEPEIEHYSCLVDALSRAGHIQEAEKVVSSM 764


>gi|302756099|ref|XP_002961473.1| hypothetical protein SELMODRAFT_77426 [Selaginella moellendorffii]
 gi|300170132|gb|EFJ36733.1| hypothetical protein SELMODRAFT_77426 [Selaginella moellendorffii]
          Length = 643

 Score =  259 bits (661), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 166/558 (29%), Positives = 275/558 (49%), Gaps = 28/558 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + L+  Y K G +++A  +FD I  +N+ SW+I++  Y+ NG   +++  F  + 
Sbjct: 46  DRYLGNLLVQAYGKCGSVRDAREVFDRIQRRNIFSWTIMLGAYADNGHGREALGLFREIQ 105

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------- 106
             G+  ++ T+V  L A A   +LE  R IH      G ES++                 
Sbjct: 106 SRGMAIDNVTLVSALKACAVAGDLEEGRGIHASARSLGYESEIIVATALVSMYGKCGHLE 165

Query: 107 -----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                F  L     VS NA++A +  N   ++AV L+      G+ P+A T ++V+ G  
Sbjct: 166 EAKAVFATLVERNRVSWNAMLAAYAQNGHCEEAVRLYRLMCFEGIKPDATTFVSVLDGWK 225

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
             G       IH   ++ G   + ++ N+++ MY     +D A  +F  +  K V+SW  
Sbjct: 226 GEGEHGT--RIHDQVLESGFGSNTTLANALVSMYGSGGRVDDARYVFDGIAEKTVVSWNA 283

Query: 222 MMGLFVDFEYAGDALKIF---REMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           M+  +      G A+ +F    EMR++ +  ++V  +NL+   A  G L+ G+++HA+V 
Sbjct: 284 MLTAYAQNGRYGKAVDLFWKMDEMRRALVEPNSVTFVNLLVACAATGFLEAGRKIHAEVA 343

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
             GL S L +  ++I MYS+CG+L  ++SVF+ +  K+LVSW  +I  Y  +G  +EAL 
Sbjct: 344 SLGLLSTLSVGGALINMYSECGNLVLAKSVFDSVPHKNLVSWNVLIGSYAGDGDGKEALG 403

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
              KM  E     D  T +S+L A     AL     +H +   +G  R  ++   LI+ Y
Sbjct: 404 VHQKMELEGLKP-DKFTFISVLHACSASEALAEGKAIHALIAASGLERDEAIGTALINLY 462

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
            KCG+++ A  VF +M   R++V+WN+++      G  E  + + H M   G +PD  T+
Sbjct: 463 GKCGSLEQARNVFLDMKSRRNLVTWNSMLAAACTKGGLEDCVEIIHMMGLEGIMPDELTF 522

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
           LS+L AC H G    GL +F     +  +  + +HY CVVD+L R G L +A  +  ++ 
Sbjct: 523 LSVLFACSHGGSIQQGLDLFLSAGVDYGIATNTKHYVCVVDILGRVGRLEEAQEVLNRMP 582

Query: 519 EGMGPNIWRALLSGCVLH 536
                  W  LL  C +H
Sbjct: 583 FQANDVAWMTLLGACRIH 600



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 170/330 (51%), Gaps = 7/330 (2%)

Query: 155 TVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
           +++R C +       +       + G   D  + N ++  Y     +  A ++F  ++ +
Sbjct: 17  SILRDCASARDLTAAKQAQWEIARDGFGGDRYLGNLLVQAYGKCGSVRDAREVFDRIQRR 76

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
           ++ SWT M+G + D  +  +AL +FRE++   +  D V L++ +   A+ GDL+ G+ +H
Sbjct: 77  NIFSWTIMLGAYADNGHGREALGLFREIQSRGMAIDNVTLVSALKACAVAGDLEEGRGIH 136

Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
           A     G +SE+ ++ ++++MY KCG L+ +++VF  + E++ VSW A+++ Y QNG   
Sbjct: 137 ASARSLGYESEIIVATALVSMYGKCGHLEEAKAVFATLVERNRVSWNAMLAAYAQNGHCE 196

Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
           EA+  +  M  E     D+ T VS+L   G     E   ++H    E+GF    ++ N L
Sbjct: 197 EAVRLYRLMCFEGIKP-DATTFVSVL--DGWKGEGEHGTRIHDQVLESGFGSNTTLANAL 253

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV-- 452
           +S Y   G VD A  VF+ +   + VVSWN ++  Y  NG    A+ L+ KM E      
Sbjct: 254 VSMYGSGGRVDDARYVFDGIA-EKTVVSWNAMLTAYAQNGRYGKAVDLFWKMDEMRRALV 312

Query: 453 -PDSSTYLSILNACGHAGLTNDGLVIFNQM 481
            P+S T++++L AC   G    G  I  ++
Sbjct: 313 EPNSVTFVNLLVACAATGFLEAGRKIHAEV 342


>gi|255559826|ref|XP_002520932.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539898|gb|EEF41477.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 757

 Score =  258 bits (660), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 164/548 (29%), Positives = 290/548 (52%), Gaps = 28/548 (5%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           +L+ Y K G++  A ++FD +  ++ VSW+++IHG    G   + +  F +  ++G  PN
Sbjct: 105 ILNFYIKCGELDTAVSVFDSMRSRDSVSWNVLIHGCLDYGALVEGLWQFINARVAGFEPN 164

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------LFEG 109
             T+V ++ A   L+  +    +HG +++ GL +                      LF+ 
Sbjct: 165 ISTLVLLVQACRSLRAKQEGLQLHGYLIQSGLWASWSVQNSFLCMYADVDMDCARILFDE 224

Query: 110 LKNPYLVSCNAIVAGFINNKLFQQAVLLFN-FFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
           +    ++S +A++ G++     Q  + +F      S + P+ V +++V++ C    +  +
Sbjct: 225 MPEKDVISWSAMIGGYVQYLEDQIGLQIFQKMLSTSRITPDGVILVSVLKACANSVNITM 284

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM-GLFV 227
             L+HGLTI  GL  D+ V NS++DMYS   D  +A ++F EM  ++ +SW  ++ GL +
Sbjct: 285 GRLVHGLTICRGLDSDLFVKNSLIDMYSKCKDAGSAFEVFSEMPRRNNVSWNSLLSGLIL 344

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
           + +Y+ +AL +   MR   I  D V L+N + +          K +H   +  G +S   
Sbjct: 345 NKKYS-EALLLVYSMRTEGIEADEVTLVNCLQICKYFAHPYHCKAVHCATIRRGCESNEI 403

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
           + NS+I  Y+KC  ++ +  VF++   + +V W+ +I+G+   G   EA+  F KM  E 
Sbjct: 404 VLNSLIDAYAKCNLIELAWEVFSRTRRRDVVLWSTMIAGFAHCGKPDEAIAVFQKM-NEG 462

Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
            +  +++T++++L A    A L+  +  HG A   G     +V   ++  YSKCG ++ +
Sbjct: 463 IEVPNAVTIINLLQACSVSAELKRSMWAHGAAIRRGLAAEVAVGTAIVDMYSKCGEIEAS 522

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
              F ++   +++++W+T+I  YG+NG    ALAL  +M      P++ TYLS+L AC H
Sbjct: 523 RKAFNQIP-QKNIITWSTMIAAYGMNGLAHEALALLAQMKSHEIKPNALTYLSVLTACSH 581

Query: 468 AGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM--GPNI 525
            GL   GL +F  MI+++ V P  EHY C+VD+L+RAG L DA  L   + E    G ++
Sbjct: 582 GGLVEMGLSVFKSMIQDHGVDPEFEHYSCMVDMLSRAGKLDDAMELIRMMPETFRAGASV 641

Query: 526 WRALLSGC 533
           W ALLS C
Sbjct: 642 WGALLSAC 649



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/296 (30%), Positives = 144/296 (48%), Gaps = 2/296 (0%)

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           +H   IK       S+ NS+L+ Y    +LD A+ +F  M  +D +SW  ++   +D+  
Sbjct: 86  LHACLIKTAFDSFTSIGNSILNFYIKCGELDTAVSVFDSMRSRDSVSWNVLIHGCLDYGA 145

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
             + L  F   R +    +   L+ L+     L   + G QLH  ++  GL +   + NS
Sbjct: 146 LVEGLWQFINARVAGFEPNISTLVLLVQACRSLRAKQEGLQLHGYLIQSGLWASWSVQNS 205

Query: 292 IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
            + MY+   D+D +R +F+++ EK ++SW+A+I GYVQ    +  L  F KM      + 
Sbjct: 206 FLCMYADV-DMDCARILFDEMPEKDVISWSAMIGGYVQYLEDQIGLQIFQKMLSTSRITP 264

Query: 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVF 411
           D + LVS+L A      + +   +HG+    G      V+N LI  YSKC +   A+ VF
Sbjct: 265 DGVILVSVLKACANSVNITMGRLVHGLTICRGLDSDLFVKNSLIDMYSKCKDAGSAFEVF 324

Query: 412 EEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
            EM   R+ VSWN+++ G  +N     AL L + M   G   D  T ++ L  C +
Sbjct: 325 SEMP-RRNNVSWNSLLSGLILNKKYSEALLLVYSMRTEGIEADEVTLVNCLQICKY 379



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 95/295 (32%), Positives = 149/295 (50%), Gaps = 23/295 (7%)

Query: 270 GKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQ 329
           GK LHA ++     S   + NSI+  Y KCG+LD++ SVF+ +  +  VSW  +I G + 
Sbjct: 83  GKCLHACLIKTAFDSFTSIGNSILNFYIKCGELDTAVSVFDSMRSRDSVSWNVLIHGCLD 142

Query: 330 NGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS 389
            G   E L QFI  R    +   S TLV ++ A   L A +  LQLHG   ++G     S
Sbjct: 143 YGALVEGLWQFINARVAGFEPNIS-TLVLLVQACRSLRAKQEGLQLHGYLIQSGLWASWS 201

Query: 390 VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
           VQN  +  Y+   ++D A I+F+EM   +DV+SW+ +I GY      +  L ++ KM  T
Sbjct: 202 VQNSFLCMYADV-DMDCARILFDEMP-EKDVISWSAMIGGYVQYLEDQIGLQIFQKMLST 259

Query: 450 GEV-PDSSTYLSILNACGHA-----GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLAR 503
             + PD    +S+L AC ++     G    GL I   +  +  VK S      ++D+ ++
Sbjct: 260 SRITPDGVILVSVLKACANSVNITMGRLVHGLTICRGLDSDLFVKNS------LIDMYSK 313

Query: 504 AGCLSDASGLAGKLLEGMGP--NI-WRALLSGCVLHVGRFQDAEALRSGSQKKGI 555
                DA G A ++   M    N+ W +LLSG +L+  ++ +A  L    + +GI
Sbjct: 314 C---KDA-GSAFEVFSEMPRRNNVSWNSLLSGLILN-KKYSEALLLVYSMRTEGI 363



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 76/370 (20%), Positives = 166/370 (44%), Gaps = 29/370 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L+  Y K      A  +F E+P +N VSW+ ++ G  +N  + +++     M 
Sbjct: 300 DLFVKNSLIDMYSKCKDAGSAFEVFSEMPRRNNVSWNSLLSGLILNKKYSEALLLVYSMR 359

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES------------------- 104
             G+  +  T+V  L       +    +++H   ++ G ES                   
Sbjct: 360 TEGIEADEVTLVNCLQICKYFAHPYHCKAVHCATIRRGCESNEIVLNSLIDAYAKCNLIE 419

Query: 105 ---DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
              ++F   +   +V  + ++AGF +     +A+ +F        VPNAVT++ +++ C 
Sbjct: 420 LAWEVFSRTRRRDVVLWSTMIAGFAHCGKPDEAIAVFQKMNEGIEVPNAVTIINLLQACS 479

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
                      HG  I+ GL  +V+V  +++DMYS   +++A+ + F ++  K++I+W+ 
Sbjct: 480 VSAELKRSMWAHGAAIRRGLAAEVAVGTAIVDMYSKCGEIEASRKAFNQIPQKNIITWST 539

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG- 280
           M+  +     A +AL +  +M+   I  + +  L++++  +  G ++ G  +   ++   
Sbjct: 540 MIAAYGMNGLAHEALALLAQMKSHEIKPNALTYLSVLTACSHGGLVEMGLSVFKSMIQDH 599

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVS---WTAIISG---YVQNGCAR 334
           G+  E    + ++ M S+ G LD +  +   + E        W A++S    Y  +    
Sbjct: 600 GVDPEFEHYSCMVDMLSRAGKLDDAMELIRMMPETFRAGASVWGALLSACRTYRSSTLGE 659

Query: 335 EALNQFIKMR 344
           +A+ Q +++ 
Sbjct: 660 KAVYQVLELE 669


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  258 bits (660), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 187/684 (27%), Positives = 318/684 (46%), Gaps = 124/684 (18%)

Query: 1   PCIDPYN-SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAF 59
           P I P +  + ++++Y   G    A  + + +     V W+++I  +   G  + ++   
Sbjct: 91  PFISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVS 150

Query: 60  SHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF------------ 107
             M+ +G  P+ FT+  VL A   L +     + HGL+   G ES++F            
Sbjct: 151 CRMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRC 210

Query: 108 ---------------EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFF------RGSGL 146
                           G+ +  ++S N+IV+  + +     A+ LF+        + +  
Sbjct: 211 GSLEEASMIFDEITQRGIDD--VISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNE 268

Query: 147 VPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQ 206
             + ++++ ++  C +L +    + +HG  I+ G   DV V N+++D Y+    ++ A++
Sbjct: 269 RSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVK 328

Query: 207 IFREMECKDVISWTRMMGLFV---DFEYA------------------------------- 232
           +F  ME KDV+SW  M+  +    +FE A                               
Sbjct: 329 VFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGC 388

Query: 233 -GDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV----------LGG 281
             +AL +FR+M  S  + + V +++++S  A LG   +G ++HA  +           GG
Sbjct: 389 SHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGG 448

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT--EKSLVSWTAIISGYVQNGCAREALNQ 339
              +L + N++I MYSKC    ++RS+F+ I   E+++V+WT +I G+ Q G + +AL  
Sbjct: 449 EDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKL 508

Query: 340 FIKMRQEKTD-SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS----VQNCL 394
           F++M  E    + ++ T+  IL A   LAA+ I  Q+H  A+     RY S    V NCL
Sbjct: 509 FVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIH--AYVLRHHRYESSAYFVANCL 566

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           I  YSKCG+VD A  VF+ M   +  +SW +++ GYG++G G  AL ++ KM + G VPD
Sbjct: 567 IDMYSKCGDVDTARHVFDSMS-QKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPD 625

Query: 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLA 514
             T+L +L AC H G+ + GL  F+ M  +  + P  EHY C +DLLAR+G L  A    
Sbjct: 626 DITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTV 685

Query: 515 GKLLEGMGPNIWRALLSGCVLH---------------------------------VGRFQ 541
             +       +W ALLS C +H                                  GR++
Sbjct: 686 KDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWK 745

Query: 542 DAEALRSGSQKKGIIKIPGISFLN 565
           D   +R   +K GI K PG S++ 
Sbjct: 746 DVARIRHLMKKSGIKKRPGCSWVQ 769


>gi|168008904|ref|XP_001757146.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162691644|gb|EDQ78005.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 527

 Score =  258 bits (660), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 147/491 (29%), Positives = 264/491 (53%), Gaps = 26/491 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           +PY ++KL+  Y + GK+++A ++FD++ +KNV +W+ +I GY+ +G    +++ ++ M 
Sbjct: 33  NPYVANKLMRVYIRCGKVQDARHVFDKLVKKNVFNWTTMIGGYAEHGRPADAIEVYNQMR 92

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
             G  PN  T + +L A A    L+  + IH  +   G  SD                  
Sbjct: 93  QEGGRPNEVTYLSILKACACPVGLKWGKEIHAHISHGGFRSDVPVQTALVNMYAKSGSIK 152

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI--RG 159
               +F+ +    +++ N ++ G   +   Q+A  LF   +  G VP++ T L+++    
Sbjct: 153 DARLVFDEMAERNVITWNVMIGGLAQHGFGQEAFSLFLQMQEEGFVPDSTTYLSILTATA 212

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C + G+    + +H   +K G   D+ V N+++ +YS    +D A  +F  M  +DVISW
Sbjct: 213 CSSAGALGWVKEVHRHAVKAGFDSDMRVCNALVHVYSKSGSVDDARLVFEGMLDRDVISW 272

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           + M+G         +A  +F +M++  +I +    +++++ +A  G L+  KQ+H     
Sbjct: 273 SAMIGGLAQNGCGHEAFSLFLKMQREGVIPNVTTYVSILTASASAGALEWVKQVHNHARK 332

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            GL S+ R+ N+++ MY+K G +D +R VF+Q++ +++ +W A+I G  Q+GC +EA + 
Sbjct: 333 AGLGSDFRVCNALVHMYAKSGSIDDARLVFDQMSVRNVFTWNAMIGGLAQHGCGQEAFSL 392

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           F++MR+E     D+IT +SIL AS    AL    ++H  A +AG      V N L+  Y 
Sbjct: 393 FLRMRREGVVP-DAITYMSILNASASTGALGWVKEVHRQAVQAGLDSDVRVGNALVHMYC 451

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           K G++  A ++F+ M   RDV++W  +I G   N  G+ A +L+ +M   G +P ++TY 
Sbjct: 452 KTGSISDARLMFDGM-VERDVITWTAMISGLAQNECGQEAFSLFLQMQREGFIPVATTYA 510

Query: 460 SILNACGHAGL 470
           SILN C   GL
Sbjct: 511 SILNVCTSTGL 521



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 111/388 (28%), Positives = 211/388 (54%), Gaps = 27/388 (6%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + L++ Y KSG IK+A  +FDE+ E+NV++W+++I G + +GF +++   F  M   G +
Sbjct: 139 TALVNMYAKSGSIKDARLVFDEMAERNVITWNVMIGGLAQHGFGQEAFSLFLQMQEEGFV 198

Query: 69  PNSFTMVGVLVAAA--GLQNLELARSIHGLMVKFGLESDL-------------------- 106
           P+S T + +L A A      L   + +H   VK G +SD+                    
Sbjct: 199 PDSTTYLSILTATACSSAGALGWVKEVHRHAVKAGFDSDMRVCNALVHVYSKSGSVDDAR 258

Query: 107 --FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
             FEG+ +  ++S +A++ G   N    +A  LF   +  G++PN  T ++++    + G
Sbjct: 259 LVFEGMLDRDVISWSAMIGGLAQNGCGHEAFSLFLKMQREGVIPNVTTYVSILTASASAG 318

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
           +    + +H    K GL  D  V N+++ MY+    +D A  +F +M  ++V +W  M+G
Sbjct: 319 ALEWVKQVHNHARKAGLGSDFRVCNALVHMYAKSGSIDDARLVFDQMSVRNVFTWNAMIG 378

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
                    +A  +F  MR+  ++ D +  +++++ +A  G L   K++H Q V  GL S
Sbjct: 379 GLAQHGCGQEAFSLFLRMRREGVVPDAITYMSILNASASTGALGWVKEVHRQAVQAGLDS 438

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           ++R+ N+++ MY K G +  +R +F+ + E+ +++WTA+ISG  QN C +EA + F++M+
Sbjct: 439 DVRVGNALVHMYCKTGSISDARLMFDGMVERDVITWTAMISGLAQNECGQEAFSLFLQMQ 498

Query: 345 QEKTDSVDSI--TLVSILTASGELAALE 370
           +E    V +   +++++ T++G LA +E
Sbjct: 499 REGFIPVATTYASILNVCTSTG-LAMVE 525



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 126/421 (29%), Positives = 222/421 (52%), Gaps = 13/421 (3%)

Query: 154 LTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC 213
           + V++ C         + +H   +K G+  +  V N ++ +Y     +  A  +F ++  
Sbjct: 3   VDVLQRCFKHKDLTSVKQVHDCILKSGMDQNPYVANKLMRVYIRCGKVQDARHVFDKLVK 62

Query: 214 KDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQL 273
           K+V +WT M+G + +     DA++++ +MR+     + V  L+++   A    LK GK++
Sbjct: 63  KNVFNWTTMIGGYAEHGRPADAIEVYNQMRQEGGRPNEVTYLSILKACACPVGLKWGKEI 122

Query: 274 HAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA 333
           HA +  GG +S++ +  +++ MY+K G +  +R VF+++ E+++++W  +I G  Q+G  
Sbjct: 123 HAHISHGGFRSDVPVQTALVNMYAKSGSIKDARLVFDEMAERNVITWNVMIGGLAQHGFG 182

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASG--ELAALEICLQLHGIAFEAGFPRYRSVQ 391
           +EA + F++M QE+    DS T +SILTA+      AL    ++H  A +AGF     V 
Sbjct: 183 QEAFSLFLQM-QEEGFVPDSTTYLSILTATACSSAGALGWVKEVHRHAVKAGFDSDMRVC 241

Query: 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE 451
           N L+  YSK G+VD A +VFE M   RDV+SW+ +I G   NG G  A +L+ KM   G 
Sbjct: 242 NALVHVYSKSGSVDDARLVFEGM-LDRDVISWSAMIGGLAQNGCGHEAFSLFLKMQREGV 300

Query: 452 VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGC--VVDLLARAGCLSD 509
           +P+ +TY+SIL A   AG       + N      K     +   C  +V + A++G + D
Sbjct: 301 IPNVTTYVSILTASASAGALEWVKQVHNH---ARKAGLGSDFRVCNALVHMYAKSGSIDD 357

Query: 510 ASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIK--IPGISFLNST 567
           A  L    +       W A++ G   H G  Q+A +L    +++G++   I  +S LN++
Sbjct: 358 AR-LVFDQMSVRNVFTWNAMIGGLAQH-GCGQEAFSLFLRMRREGVVPDAITYMSILNAS 415

Query: 568 S 568
           +
Sbjct: 416 A 416


>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial [Vitis vinifera]
          Length = 875

 Score =  258 bits (660), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 162/556 (29%), Positives = 292/556 (52%), Gaps = 27/556 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D    + LL  Y +   + +A   FD +P ++VV+WS ++  +  NG   + +  FS M+
Sbjct: 134 DAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMI 193

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
              + P+S TM+ V  A + L +L L RS+HG +V+  +ES+                  
Sbjct: 194 SEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNNSLIVMYGKLGDLY 253

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               LFE +          +++ +  +  FQ+A+ +F   +   + PN VTM+ V+  C 
Sbjct: 254 SAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACA 313

Query: 162 ALGSRALCELIHGLTIKLGLILDVS-VNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
            LG       +HG  I+  +  ++  +  +++++Y+   +L    ++F  ++ K ++SW 
Sbjct: 314 RLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWN 373

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++ +F       +AL +F +M+   ++ D+ +L + +S    +   + G Q+H  ++  
Sbjct: 374 TLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKT 433

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           G  ++  + N++I MY+KCG + S+  +F +I EKSLV+W ++I G+ QNG + EA+  F
Sbjct: 434 GNFNDF-VQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLF 492

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            +M       +D +T +S++ A   L  LE    +H      G  +   +   L   YSK
Sbjct: 493 DQMYMNCV-KMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSK 551

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CG + +A+ VF+ M   R +VSW+ +I GYG++G     ++L+++M  +G  P+  T++ 
Sbjct: 552 CGELQMAHGVFDRMS-ERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMH 610

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           IL+AC HAG   +G + FN M  E  V+P  +H+ C+VDLL+RAG L+ A  +   L   
Sbjct: 611 ILSACSHAGAVEEGKLYFNSM-SEFGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFP 669

Query: 521 MGPNIWRALLSGCVLH 536
              +IW ALL+GC +H
Sbjct: 670 ANSSIWGALLNGCRIH 685



 Score =  221 bits (563), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 155/557 (27%), Positives = 284/557 (50%), Gaps = 31/557 (5%)

Query: 5   PYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML 64
           P  S+KL+ +Y + G  + ++ +FD  P+ +   W ++I  Y   GF E+++  +  M+ 
Sbjct: 33  PPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGGFFEEAVSLYHEMVY 92

Query: 65  SGLLP-NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
                 ++F    VL A +G  +L +   +HG ++K G ESD                  
Sbjct: 93  QDQTQISNFVFPSVLKACSGFGDLSVGGKVHGRVIKCGFESDAVVETSLLCMYGEMSCLD 152

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                F+ +    +V+ ++IV  F+ N    + + +F+      + P++VTML+V   C 
Sbjct: 153 DACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACS 212

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            LGS  L   +HG  ++  +  + S+NNS++ MY  L DL +A ++F  + C+    WT 
Sbjct: 213 ELGSLRLGRSVHGYVVRREIESNASLNNSLIVMYGKLGDLYSAERLFENVPCRMTAPWTP 272

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+  +       +AL +F +M++ ++  + V ++ ++   A LG +K G+ +H  V+   
Sbjct: 273 MISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRA 332

Query: 282 LQSELR-LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           +  EL  L  +++ +Y+  G+L     VF  I EK+++SW  +IS + +NG   EAL  F
Sbjct: 333 MDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLF 392

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG-FPRYRSVQNCLISSYS 399
           ++M Q +    DS +L S L+A G ++  ++  Q+HG   + G F  +  VQN LI  Y+
Sbjct: 393 VQM-QTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTGNFNDF--VQNALIDMYA 449

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           KCG V  A  +FE++   + +V+WN++I G+  NG+   A+ L+ +M       D  T+L
Sbjct: 450 KCGFVHSANKMFEKIK-EKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFL 508

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519
           S++ AC H G    G  + +++I     K S      + D+ ++ G L  A G+  ++ E
Sbjct: 509 SVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTA-LTDMYSKCGELQMAHGVFDRMSE 567

Query: 520 GMGPNIWRALLSGCVLH 536
               + W  +++G  +H
Sbjct: 568 RSIVS-WSVMIAGYGMH 583



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 93/198 (46%), Gaps = 1/198 (0%)

Query: 272 QLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNG 331
           QLHA + + GL      S  +I  Y++ G  +SS+ VF+   +     W  +I  YV  G
Sbjct: 19  QLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGG 78

Query: 332 CAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ 391
              EA++ + +M  +    + +    S+L A      L +  ++HG   + GF     V+
Sbjct: 79  FFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKVHGRVIKCGFESDAVVE 138

Query: 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE 451
             L+  Y +   +D A   F+ M  +RDVV+W++I+  +  NG     L ++ +M     
Sbjct: 139 TSLLCMYGEMSCLDDACKAFDTMP-IRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEAV 197

Query: 452 VPDSSTYLSILNACGHAG 469
            PDS T LS+  AC   G
Sbjct: 198 EPDSVTMLSVTEACSELG 215


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  258 bits (660), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 172/555 (30%), Positives = 286/555 (51%), Gaps = 27/555 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L++ Y K G ++ A  +FD++P++N+VSW+ V++    NG  E+S   F  ++
Sbjct: 230 DVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLENGVFEESYGLFKGLL 289

Query: 64  --LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL------------------- 102
               GL+P+  TMV V+   A    + L    HGL +K GL                   
Sbjct: 290 NGDEGLMPDVATMVTVIPLCARQGEVRLGMVFHGLALKLGLCGELKVNSSLLDMYSKCGY 349

Query: 103 --ESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVP-NAVTMLTVIRG 159
             E+ +        ++S N+++ G+  ++ F+ A  L    +    V  N VT+L V+  
Sbjct: 350 LCEARVLFDTNEKNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPV 409

Query: 160 CVALGSRALCELIHGLTIKLGLIL-DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
           C         + IHG  ++ G I  D  V N+ +  Y+    L  A  +F  ME K V S
Sbjct: 410 CEEEIQFLKLKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSS 469

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           W  ++G  V   +   AL ++  MR S +  D   + +L+S  A L  L  GK++H  ++
Sbjct: 470 WNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSML 529

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
             G + +  +  S++++Y +CG +  ++  F+ + EK+LV W  +I+G+ QN    +AL+
Sbjct: 530 RNGFELDEFICISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALD 589

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
            F +M   K    D I+++  L A  +++AL +  +LH  A ++    +  V   LI  Y
Sbjct: 590 MFHQMLSSKIWP-DEISIIGALGACSQVSALRLGKELHCFAVKSHLTEHSFVTCSLIDMY 648

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
           +KCG ++ +  +F+ +  L+  V+WN +I GYG++GHG  A+ L+  M   G  PDS T+
Sbjct: 649 AKCGCMEQSQNIFDRV-HLKGEVTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDSVTF 707

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
           +++L AC HAGL  +GL    QM     +KP  EHY CVVD+L RAG L++A  L  +L 
Sbjct: 708 IALLTACNHAGLVAEGLEYLGQMQSLFGIKPKLEHYACVVDMLGRAGRLNEALELVNELP 767

Query: 519 EGMGPNIWRALLSGC 533
           +     IW +LLS C
Sbjct: 768 DKPDSRIWSSLLSSC 782



 Score =  215 bits (547), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 162/565 (28%), Positives = 282/565 (49%), Gaps = 51/565 (9%)

Query: 27  LFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM-LSGLLPNSFTMVGVLVAAAGLQ 85
           +F+    KN+  W+ ++ GY  N     ++  F  M+ L+  +P++FT+  V+ A  G+ 
Sbjct: 151 VFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVY 210

Query: 86  NLELARSIHGLMVKFGLESDLFEG----------------------LKNPYLVSCNAIVA 123
           ++ L  ++HG  +K  + SD+F G                      +    LVS N+++ 
Sbjct: 211 DVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMY 270

Query: 124 GFINNKLFQQAVLLFNFFRG-----SGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIK 178
             + N +F+++   +  F+G      GL+P+  TM+TVI  C   G   L  + HGL +K
Sbjct: 271 ACLENGVFEES---YGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMVFHGLALK 327

Query: 179 LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV-DFEYAGDALK 237
           LGL  ++ VN+S+LDMYS    L  A  +F   E K+VISW  M+G +  D ++ G A +
Sbjct: 328 LGLCGELKVNSSLLDMYSKCGYLCEARVLFDTNE-KNVISWNSMIGGYSKDRDFRG-AFE 385

Query: 238 IFREMR-KSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG-LQSELRLSNSIIAM 295
           + R+M+ + ++  + V LLN++ V        + K++H   +  G +QS+  ++N+ +A 
Sbjct: 386 LLRKMQMEDKVKVNEVTLLNVLPVCEEEIQFLKLKEIHGYALRHGFIQSDELVANAFVAG 445

Query: 296 YSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSIT 355
           Y+KCG L  +  VF  +  K + SW A+I G+VQNG  R+AL+ ++ MR    +  D  T
Sbjct: 446 YAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQNGFPRKALDLYLLMRGSGLEP-DLFT 504

Query: 356 LVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMG 415
           + S+L+A   L +L    ++HG     GF     +   L+S Y +CG + LA + F+ M 
Sbjct: 505 IASLLSACARLKSLSCGKEIHGSMLRNGFELDEFICISLVSLYVQCGKILLAKLFFDNME 564

Query: 416 FLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDG- 474
             +++V WNT+I G+  N     AL ++H+M  +   PD  + +  L AC        G 
Sbjct: 565 -EKNLVCWNTMINGFSQNEFPFDALDMFHQMLSSKIWPDEISIIGALGACSQVSALRLGK 623

Query: 475 ----LVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALL 530
                 + + + E + V  S      ++D+ A+ GC+  +  +  + +   G   W  L+
Sbjct: 624 ELHCFAVKSHLTEHSFVTCS------LIDMYAKCGCMEQSQNIFDR-VHLKGEVTWNVLI 676

Query: 531 SGCVLHVGRFQDAEALRSGSQKKGI 555
           +G  +H G  + A  L    Q  G 
Sbjct: 677 TGYGIH-GHGRKAIELFKSMQNAGF 700



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 148/310 (47%), Gaps = 22/310 (7%)

Query: 266 DLKRGKQLHAQVVLGG-LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAII 324
           +++ G+++H  +      Q+++ L   ++ MYS C     S  VFN    K+L  W A++
Sbjct: 108 NIEIGRKIHNFISTSPHFQNDVVLITRLVTMYSICDSPYDSCLVFNASRRKNLFLWNALL 167

Query: 325 SGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGF 384
           SGY++N   R+A+  F++M        D+ TL  ++ A   +  + +   +HG A +   
Sbjct: 168 SGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFALKTKV 227

Query: 385 PRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH 444
                V N LI+ Y K G V+ A  VF++M   R++VSWN+++Y    NG  E +  L+ 
Sbjct: 228 LSDVFVGNALIAMYGKFGFVESAVKVFDKMP-QRNLVSWNSVMYACLENGVFEESYGLFK 286

Query: 445 KMT--ETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIE-----ENKVKPSQEHYGCV 497
            +   + G +PD +T ++++  C   G    G+V     ++     E KV  S      +
Sbjct: 287 GLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMVFHGLALKLGLCGELKVNSS------L 340

Query: 498 VDLLARAGCLSDASGLAGKLLEGMGPNI--WRALLSGCVLHVGRFQDAEALRSGSQKKGI 555
           +D+ ++ G L +A      L +    N+  W +++ G       F+ A  L    Q +  
Sbjct: 341 LDMYSKCGYLCEAR----VLFDTNEKNVISWNSMIGG-YSKDRDFRGAFELLRKMQMEDK 395

Query: 556 IKIPGISFLN 565
           +K+  ++ LN
Sbjct: 396 VKVNEVTLLN 405



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 117/251 (46%), Gaps = 36/251 (14%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +    L+S Y + GKI  A+  FD + EKN+V W+ +I+G+S N F   ++  F  M
Sbjct: 535 LDEFICISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQM 594

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL-------------------- 102
           + S + P+  +++G L A + +  L L + +H   VK  L                    
Sbjct: 595 LSSKIWPDEISIIGALGACSQVSALRLGKELHCFAVKSHLTEHSFVTCSLIDMYAKCGCM 654

Query: 103 --ESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
               ++F+ +     V+ N ++ G+  +   ++A+ LF   + +G  P++VT + ++  C
Sbjct: 655 EQSQNIFDRVHLKGEVTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLTAC 714

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMD-------LDAAIQIFREMEC 213
              G  A      GL   LG +  +      L+ Y+C++D       L+ A+++  E+  
Sbjct: 715 NHAGLVA-----EGLEY-LGQMQSLFGIKPKLEHYACVVDMLGRAGRLNEALELVNELPD 768

Query: 214 K-DVISWTRMM 223
           K D   W+ ++
Sbjct: 769 KPDSRIWSSLL 779


>gi|224132434|ref|XP_002328268.1| predicted protein [Populus trichocarpa]
 gi|222837783|gb|EEE76148.1| predicted protein [Populus trichocarpa]
          Length = 749

 Score =  258 bits (660), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 160/546 (29%), Positives = 285/546 (52%), Gaps = 31/546 (5%)

Query: 15  YFKSGKIKEAENLFDEIPE-KNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFT 73
           Y + G    A ++F+ +   ++ VSW+I+IHG+  NG     +  F++  ++G  PN  T
Sbjct: 92  YIRCGDFDIAVDVFNSMRRSRDSVSWNILIHGHLDNGALVAGLWWFTNARVAGFEPNIST 151

Query: 74  MVGVLVAAAGLQNLELARSIHGLMVKFGLES---------------------DLFEGLKN 112
           MV V+ A   L        +HG ++K G  +                     +LF+ +  
Sbjct: 152 MVLVIQACRILGTKHDGLILHGYLIKSGFWAISSVQNSLLSMYVDADMECARELFDEMHE 211

Query: 113 PYLVSCNAIVAGFINNKLFQQAVLLF-NFFRGSGLVPNAVTMLTVIRGCVALGSRALC-- 169
             +++ + ++ G++  +  Q  + +F       G+ P+ V M++V++ C +  SR +C  
Sbjct: 212 KDVIAWSVMIGGYLQWEEPQVGLQMFRKMVLVPGIEPDGVVMVSVLKACAS--SRDVCTG 269

Query: 170 ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDF 229
            L+HGL I  G   D+ V NS++DMYS   D  +A ++F E+  ++ +SW  M+  FV  
Sbjct: 270 RLVHGLVIHRGFDCDLFVENSLIDMYSKCKDAGSAFKVFNEISQRNNVSWNSMLSGFVLN 329

Query: 230 EYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLS 289
           E   +A  +   MRK R+  D V L+N++ +          K +H  ++  G ++   + 
Sbjct: 330 ENYSEAQSLISSMRKERVETDEVTLVNILQICKYFVHPFHCKSIHCVMIRRGSEANELVL 389

Query: 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD 349
           +++I  Y+KC  ++ +  VF ++  + +VSW+ +ISG+   G   EA+  + +M ++   
Sbjct: 390 SALIDAYAKCYLIEIAWEVFARMRRRDVVSWSTMISGFAHCGKPDEAIAVYQEMDRDLVK 449

Query: 350 SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYI 409
             + IT++++L A    A L+     HG+A   GF    +V   ++  YSKCG +  +  
Sbjct: 450 P-NVITIINLLEACSVTAELKRSKWAHGVAIRQGFASEVTVGTAVVDMYSKCGEILASRR 508

Query: 410 VFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAG 469
            F+++  L+++V+W+ +I  YG+NG    ALAL+ +M   G  P+  T LS+L AC H G
Sbjct: 509 AFDQLA-LKNIVTWSAMIAAYGMNGLAHEALALFAEMKRHGLKPNPVTTLSVLAACSHGG 567

Query: 470 LTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM--GPNIWR 527
           L  +GL +F  M++E  ++P  EHY C+VD+L RAG L  A  +   +   +  G +IW 
Sbjct: 568 LVEEGLSLFKSMVQELGLEPGFEHYSCMVDMLGRAGKLDTAIEVIKAMPHNLKNGASIWG 627

Query: 528 ALLSGC 533
           +LLS C
Sbjct: 628 SLLSAC 633



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 134/452 (29%), Positives = 231/452 (51%), Gaps = 27/452 (5%)

Query: 38  SWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLM 97
           +W + I   S NG  ++ +  +  +  +G+     ++   ++ A    +    +S+H  +
Sbjct: 14  NWILRIKESSANGKWQEVVSHYHEIKKAGIQTVDVSVFPPILKAWSFLSHRHGKSLHACL 73

Query: 98  VKFGLES----------------------DLFEGLKNPY-LVSCNAIVAGFINNKLFQQA 134
           +K G +S                      D+F  ++     VS N ++ G ++N      
Sbjct: 74  IKQGFDSFTSIGNSIMGFYIRCGDFDIAVDVFNSMRRSRDSVSWNILIHGHLDNGALVAG 133

Query: 135 VLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDM 194
           +  F   R +G  PN  TM+ VI+ C  LG++    ++HG  IK G     SV NS+L M
Sbjct: 134 LWWFTNARVAGFEPNISTMVLVIQACRILGTKHDGLILHGYLIKSGFWAISSVQNSLLSM 193

Query: 195 YSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREM-RKSRIICDTVA 253
           Y    D++ A ++F EM  KDVI+W+ M+G ++ +E     L++FR+M     I  D V 
Sbjct: 194 Y-VDADMECARELFDEMHEKDVIAWSVMIGGYLQWEEPQVGLQMFRKMVLVPGIEPDGVV 252

Query: 254 LLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT 313
           +++++   A   D+  G+ +H  V+  G   +L + NS+I MYSKC D  S+  VFN+I+
Sbjct: 253 MVSVLKACASSRDVCTGRLVHGLVIHRGFDCDLFVENSLIDMYSKCKDAGSAFKVFNEIS 312

Query: 314 EKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICL 373
           +++ VSW +++SG+V N    EA +    MR+E+ ++ D +TLV+IL           C 
Sbjct: 313 QRNNVSWNSMLSGFVLNENYSEAQSLISSMRKERVET-DEVTLVNILQICKYFVHPFHCK 371

Query: 374 QLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVN 433
            +H +    G      V + LI +Y+KC  +++A+ VF  M   RDVVSW+T+I G+   
Sbjct: 372 SIHCVMIRRGSEANELVLSALIDAYAKCYLIEIAWEVFARMR-RRDVVSWSTMISGFAHC 430

Query: 434 GHGETALALYHKMTETGEVPDSSTYLSILNAC 465
           G  + A+A+Y +M      P+  T +++L AC
Sbjct: 431 GKPDEAIAVYQEMDRDLVKPNVITIINLLEAC 462



 Score =  188 bits (478), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 136/500 (27%), Positives = 254/500 (50%), Gaps = 43/500 (8%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML-SGLLP 69
           LLS Y  +  ++ A  LFDE+ EK+V++WS++I GY      +  ++ F  M+L  G+ P
Sbjct: 190 LLSMYVDA-DMECARELFDEMHEKDVIAWSVMIGGYLQWEEPQVGLQMFRKMVLVPGIEP 248

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPYL------------ 115
           +   MV VL A A  +++   R +HGL++  G + DLF    L + Y             
Sbjct: 249 DGVVMVSVLKACASSRDVCTGRLVHGLVIHRGFDCDLFVENSLIDMYSKCKDAGSAFKVF 308

Query: 116 --------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRA 167
                   VS N++++GF+ N+ + +A  L +  R   +  + VT++ +++ C       
Sbjct: 309 NEISQRNNVSWNSMLSGFVLNENYSEAQSLISSMRKERVETDEVTLVNILQICKYFVHPF 368

Query: 168 LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
            C+ IH + I+ G   +  V ++++D Y+    ++ A ++F  M  +DV+SW+ M+  F 
Sbjct: 369 HCKSIHCVMIRRGSEANELVLSALIDAYAKCYLIEIAWEVFARMRRRDVVSWSTMISGFA 428

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
                 +A+ +++EM +  +  + + ++NL+   ++  +LKR K  H   +  G  SE+ 
Sbjct: 429 HCGKPDEAIAVYQEMDRDLVKPNVITIINLLEACSVTAELKRSKWAHGVAIRQGFASEVT 488

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
           +  +++ MYSKCG++ +SR  F+Q+  K++V+W+A+I+ Y  NG A EAL  F +M++  
Sbjct: 489 VGTAVVDMYSKCGEILASRRAFDQLALKNIVTWSAMIAAYGMNGLAHEALALFAEMKRHG 548

Query: 348 TDSVDSITLVSILTASGELAALEICLQL-----HGIAFEAGFPRYRSVQNCLISSYSKCG 402
               + +T +S+L A      +E  L L       +  E GF  Y    +C++    + G
Sbjct: 549 LKP-NPVTTLSVLAACSHGGLVEEGLSLFKSMVQELGLEPGFEHY----SCMVDMLGRAG 603

Query: 403 NVDLAYIVFEEMGF-LRDVVS-WNTIIYG---YGVNGHGETALALYHKMTETGEVPDSST 457
            +D A  V + M   L++  S W +++     YG+   G+ A++   ++    E  +S+ 
Sbjct: 604 KLDTAIEVIKAMPHNLKNGASIWGSLLSACRSYGLTELGKEAISRVLEL----EPSNSAG 659

Query: 458 YLSILNACGHAGLTNDGLVI 477
           YL   +     GL +D   I
Sbjct: 660 YLVASSMYAADGLWDDAARI 679



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 86/413 (20%), Positives = 194/413 (46%), Gaps = 34/413 (8%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L+  Y K      A  +F+EI ++N VSW+ ++ G+ +N  + ++    S M 
Sbjct: 284 DLFVENSLIDMYSKCKDAGSAFKVFNEISQRNNVSWNSMLSGFVLNENYSEAQSLISSMR 343

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES------------------- 104
              +  +  T+V +L       +    +SIH +M++ G E+                   
Sbjct: 344 KERVETDEVTLVNILQICKYFVHPFHCKSIHCVMIRRGSEANELVLSALIDAYAKCYLIE 403

Query: 105 ---DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
              ++F  ++   +VS + +++GF +     +A+ ++       + PN +T++ ++  C 
Sbjct: 404 IAWEVFARMRRRDVVSWSTMISGFAHCGKPDEAIAVYQEMDRDLVKPNVITIINLLEACS 463

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
                   +  HG+ I+ G   +V+V  +V+DMYS   ++ A+ + F ++  K++++W+ 
Sbjct: 464 VTAELKRSKWAHGVAIRQGFASEVTVGTAVVDMYSKCGEILASRRAFDQLALKNIVTWSA 523

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG- 280
           M+  +     A +AL +F EM++  +  + V  L++++  +  G ++ G  L   +V   
Sbjct: 524 MIAAYGMNGLAHEALALFAEMKRHGLKPNPVTTLSVLAACSHGGLVEEGLSLFKSMVQEL 583

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE--KSLVS-WTAIISG---YVQNGCAR 334
           GL+      + ++ M  + G LD++  V   +    K+  S W +++S    Y      +
Sbjct: 584 GLEPGFEHYSCMVDMLGRAGKLDTAIEVIKAMPHNLKNGASIWGSLLSACRSYGLTELGK 643

Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASG---ELAALEICLQLHGIAFEAGF 384
           EA+++ +++  E ++S   +   S+  A G   + A + +  +  G+   AG+
Sbjct: 644 EAISRVLEL--EPSNSAGYLVASSMYAADGLWDDAARIRVLAKEKGVKVVAGY 694



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 91/327 (27%), Positives = 150/327 (45%), Gaps = 24/327 (7%)

Query: 239 FREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSK 298
           + E++K+ I    V++   I         + GK LHA ++  G  S   + NSI+  Y +
Sbjct: 35  YHEIKKAGIQTVDVSVFPPILKAWSFLSHRHGKSLHACLIKQGFDSFTSIGNSIMGFYIR 94

Query: 299 CGDLDSSRSVFNQITE-KSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLV 357
           CGD D +  VFN +   +  VSW  +I G++ NG     L  F   R    +   S T+V
Sbjct: 95  CGDFDIAVDVFNSMRRSRDSVSWNILIHGHLDNGALVAGLWWFTNARVAGFEPNIS-TMV 153

Query: 358 SILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFL 417
            ++ A   L      L LHG   ++GF    SVQN L+S Y    +++ A  +F+EM   
Sbjct: 154 LVIQACRILGTKHDGLILHGYLIKSGFWAISSVQNSLLSMYVD-ADMECARELFDEM-HE 211

Query: 418 RDVVSWNTIIYGYGVNGHGETALALYHKMT-ETGEVPDSSTYLSILNACGHAGLTNDGLV 476
           +DV++W+ +I GY      +  L ++ KM    G  PD    +S+L AC  +     G +
Sbjct: 212 KDVIAWSVMIGGYLQWEEPQVGLQMFRKMVLVPGIEPDGVVMVSVLKACASSRDVCTGRL 271

Query: 477 IFNQMIEENKVKPSQEHYGCVVDLLARAGCLS-----DASGLAGKLLEGMGP--NI-WRA 528
           +   +I          H G   DL      +        +G A K+   +    N+ W +
Sbjct: 272 VHGLVI----------HRGFDCDLFVENSLIDMYSKCKDAGSAFKVFNEISQRNNVSWNS 321

Query: 529 LLSGCVLHVGRFQDAEALRSGSQKKGI 555
           +LSG VL+   + +A++L S  +K+ +
Sbjct: 322 MLSGFVLN-ENYSEAQSLISSMRKERV 347



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 82/172 (47%), Gaps = 1/172 (0%)

Query: 312 ITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEI 371
           ++   L +W   I     NG  +E ++ + ++++    +VD      IL A   L+    
Sbjct: 7   VSGSKLPNWILRIKESSANGKWQEVVSHYHEIKKAGIQTVDVSVFPPILKAWSFLSHRH- 65

Query: 372 CLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYG 431
              LH    + GF  + S+ N ++  Y +CG+ D+A  VF  M   RD VSWN +I+G+ 
Sbjct: 66  GKSLHACLIKQGFDSFTSIGNSIMGFYIRCGDFDIAVDVFNSMRRSRDSVSWNILIHGHL 125

Query: 432 VNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIE 483
            NG     L  +      G  P+ ST + ++ AC   G  +DGL++   +I+
Sbjct: 126 DNGALVAGLWWFTNARVAGFEPNISTMVLVIQACRILGTKHDGLILHGYLIK 177


>gi|225427607|ref|XP_002269121.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19220,
           mitochondrial [Vitis vinifera]
          Length = 828

 Score =  258 bits (660), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 182/615 (29%), Positives = 297/615 (48%), Gaps = 63/615 (10%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + L+S Y +   I+ AE LF E+  K++VSW+ ++ G ++N    ++      M L G +
Sbjct: 215 NSLISLYSQCRDIQAAEILFKEMKYKDIVSWNAMLDGLALNQRIWEAFDLLHEMQLLGCV 274

Query: 69  -PNSFTMVGVLVAAAGLQNLELARSIHGLMVK--FGLE--------------------SD 105
            P+S T+V ++   A L  L   R++HGL ++   GL+                      
Sbjct: 275 QPDSVTVVIIIPLCAELMLLREGRAVHGLTLRREMGLDFSVTNSLIDMYSKCKDVKRAEH 334

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F+ +    LVS NA+++G+  N   ++A  LF     S    +  T+L ++  C +   
Sbjct: 335 VFKAIPERDLVSWNAMISGYSQNGHSREAQHLFRQLLQSYSQCSLSTLLAILPSCDSSEF 394

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK-DVISWTRMMG 224
               E IH   +KLG   +    NS++ MY    DL A   + + +    D++ W  +M 
Sbjct: 395 LQFGESIHCWQLKLGFANNPLAVNSLMLMYINCGDLVACFSLLQTVSAAADIVCWNTVMA 454

Query: 225 LFVDFEYAGDALKIFREMRKSRIIC-DTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
                 +  +ALK F  MR+   +C D+VAL N+IS    L  L  G  LH   +   ++
Sbjct: 455 GCTQNGHFWEALKAFNLMRQDPDVCHDSVALFNVISACGNLELLFAGGSLHGLALKTLME 514

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
           S++R+ N++I MY +CG+++++R +F     ++L SW  +IS + QN   R AL  F  +
Sbjct: 515 SDIRVQNALITMYGRCGEIENARIIFGFSCNRNLCSWNCMISAFSQNKDGRRALELFCHI 574

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
             E  +    IT+V IL+A  +L  L    Q+HG    +       V   L   YS CG 
Sbjct: 575 EFEPNE----ITIVGILSACTQLGVLRHGKQIHGHVIRSRLQGNSFVSAALEDMYSNCGR 630

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           +D A+ +F+     R V +WN++I  +G + +G  A+ L+H+M E G  P  ST++S+L+
Sbjct: 631 LDTAFQIFQSSP-ERSVAAWNSMISAFGFHSNGGKAIELFHEMRECGTRPTKSTFISLLS 689

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
           AC H+GL N+GL  ++ M+E   V+   EH+ C+VD+L RAG L +A     ++     P
Sbjct: 690 ACSHSGLVNEGLWYYSNMLELFNVEADTEHHVCMVDMLGRAGRLGEAYEFIRQMPTQPEP 749

Query: 524 NIWRALLSGCVLH---------------------------------VGRFQDAEALRSGS 550
            +W ALLS C  H                                  GR++DA  LR   
Sbjct: 750 GVWGALLSACSYHGDLKMGREVAELLFELEPENVGYYISLSNMYVAAGRWKDAVELRRII 809

Query: 551 QKKGIIKIPGISFLN 565
           Q KG+ K    S ++
Sbjct: 810 QDKGLKKPAAYSLID 824



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 147/510 (28%), Positives = 253/510 (49%), Gaps = 38/510 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L+  Y K G++  +E +F  +  ++++SW+ ++ G + N + +KS+  F  M 
Sbjct: 107 DSFLCNALIDMYAKCGELSSSECVFGGMEYRDIISWNSMMRGCAYNNYPKKSLWYFKKMA 166

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE-------------------- 103
            S    ++ ++   + A+A L  L   + IHG  +K G +                    
Sbjct: 167 YSSEQADNVSLTCAVSASALLGELSFGQVIHGWGIKLGYKDISHNSFENSLISLYSQCRD 226

Query: 104 ----SDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLV-PNAVTMLTVIR 158
                 LF+ +K   +VS NA++ G   N+   +A  L +  +  G V P++VT++ +I 
Sbjct: 227 IQAAEILFKEMKYKDIVSWNAMLDGLALNQRIWEAFDLLHEMQLLGCVQPDSVTVVIIIP 286

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C  L        +HGLT++  + LD SV NS++DMYS   D+  A  +F+ +  +D++S
Sbjct: 287 LCAELMLLREGRAVHGLTLRREMGLDFSVTNSLIDMYSKCKDVKRAEHVFKAIPERDLVS 346

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA-QV 277
           W  M+  +    ++ +A  +FR++ +S   C    LL ++        L+ G+ +H  Q+
Sbjct: 347 WNAMISGYSQNGHSREAQHLFRQLLQSYSQCSLSTLLAILPSCDSSEFLQFGESIHCWQL 406

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKS-LVSWTAIISGYVQNGCAREA 336
            LG   + L + NS++ MY  CGDL +  S+   ++  + +V W  +++G  QNG   EA
Sbjct: 407 KLGFANNPLAV-NSLMLMYINCGDLVACFSLLQTVSAAADIVCWNTVMAGCTQNGHFWEA 465

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
           L  F  MRQ+     DS+ L ++++A G L  L     LHG+A +        VQN LI+
Sbjct: 466 LKAFNLMRQDPDVCHDSVALFNVISACGNLELLFAGGSLHGLALKTLMESDIRVQNALIT 525

Query: 397 SYSKCGNVDLAYIVFEEMGFL--RDVVSWNTIIYGYGVNGHGETALALY-HKMTETGEVP 453
            Y +CG ++ A I+F   GF   R++ SWN +I  +  N  G  AL L+ H   E    P
Sbjct: 526 MYGRCGEIENARIIF---GFSCNRNLCSWNCMISAFSQNKDGRRALELFCHIEFE----P 578

Query: 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIE 483
           +  T + IL+AC   G+   G  I   +I 
Sbjct: 579 NEITIVGILSACTQLGVLRHGKQIHGHVIR 608



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 144/513 (28%), Positives = 254/513 (49%), Gaps = 32/513 (6%)

Query: 7   NSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSG 66
            S+ LL+ Y ++     +  LFDEI  ++V+ W+ +I     N     ++  F  +M  G
Sbjct: 9   TSTSLLTAYSRAADFSSSWALFDEILYRDVILWNAMITASVENQCFGVAVNLFVELMGEG 68

Query: 67  LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--------------------- 105
           +  +S T++ V+ A++ + NL   R +HG+  K GL SD                     
Sbjct: 69  VGLDSTTLLIVVSASSHMGNLTQGRVLHGISFKTGLLSDSFLCNALIDMYAKCGELSSSE 128

Query: 106 -LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
            +F G++   ++S N+++ G   N   ++++  F     S    + V++   +     LG
Sbjct: 129 CVFGGMEYRDIISWNSMMRGCAYNNYPKKSLWYFKKMAYSSEQADNVSLTCAVSASALLG 188

Query: 165 SRALCELIHGLTIKLGL--ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
             +  ++IHG  IKLG   I   S  NS++ +YS   D+ AA  +F+EM+ KD++SW  M
Sbjct: 189 ELSFGQVIHGWGIKLGYKDISHNSFENSLISLYSQCRDIQAAEILFKEMKYKDIVSWNAM 248

Query: 223 MGLFVDFEYAGDALKIFREMRKSRII-CDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           +      +   +A  +  EM+    +  D+V ++ +I + A L  L+ G+ +H   +   
Sbjct: 249 LDGLALNQRIWEAFDLLHEMQLLGCVQPDSVTVVIIIPLCAELMLLREGRAVHGLTLRRE 308

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           +  +  ++NS+I MYSKC D+  +  VF  I E+ LVSW A+ISGY QNG +REA + F 
Sbjct: 309 MGLDFSVTNSLIDMYSKCKDVKRAEHVFKAIPERDLVSWNAMISGYSQNGHSREAQHLFR 368

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           ++ Q  +    S TL++IL +      L+    +H    + GF       N L+  Y  C
Sbjct: 369 QLLQSYSQCSLS-TLLAILPSCDSSEFLQFGESIHCWQLKLGFANNPLAVNSLMLMYINC 427

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV-PDSSTYLS 460
           G++   + + + +    D+V WNT++ G   NGH   AL  ++ M +  +V  DS    +
Sbjct: 428 GDLVACFSLLQTVSAAADIVCWNTVMAGCTQNGHFWEALKAFNLMRQDPDVCHDSVALFN 487

Query: 461 ILNACGH-----AGLTNDGLVIFNQMIEENKVK 488
           +++ACG+     AG +  GL +   M  + +V+
Sbjct: 488 VISACGNLELLFAGGSLHGLALKTLMESDIRVQ 520



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/302 (31%), Positives = 163/302 (53%), Gaps = 5/302 (1%)

Query: 179 LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKI 238
           +G +  +  + S+L  YS   D  ++  +F E+  +DVI W  M+   V+ +  G A+ +
Sbjct: 1   MGALAHLPTSTSLLTAYSRAADFSSSWALFDEILYRDVILWNAMITASVENQCFGVAVNL 60

Query: 239 FREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSK 298
           F E+    +  D+  LL ++S ++ +G+L +G+ LH      GL S+  L N++I MY+K
Sbjct: 61  FVELMGEGVGLDSTTLLIVVSASSHMGNLTQGRVLHGISFKTGLLSDSFLCNALIDMYAK 120

Query: 299 CGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVS 358
           CG+L SS  VF  +  + ++SW +++ G   N   +++L  F KM    ++  D+++L  
Sbjct: 121 CGELSSSECVFGGMEYRDIISWNSMMRGCAYNNYPKKSLWYFKKMAY-SSEQADNVSLTC 179

Query: 359 ILTASGELAALEICLQLHGIAFEAGFP--RYRSVQNCLISSYSKCGNVDLAYIVFEEMGF 416
            ++AS  L  L     +HG   + G+    + S +N LIS YS+C ++  A I+F+EM +
Sbjct: 180 AVSASALLGELSFGQVIHGWGIKLGYKDISHNSFENSLISLYSQCRDIQAAEILFKEMKY 239

Query: 417 LRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV-PDSSTYLSILNACGHAGLTNDGL 475
            +D+VSWN ++ G  +N     A  L H+M   G V PDS T + I+  C    L  +G 
Sbjct: 240 -KDIVSWNAMLDGLALNQRIWEAFDLLHEMQLLGCVQPDSVTVVIIIPLCAELMLLREGR 298

Query: 476 VI 477
            +
Sbjct: 299 AV 300



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 119/508 (23%), Positives = 227/508 (44%), Gaps = 30/508 (5%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ L+  Y K   +K AE++F  IPE+++VSW+ +I GYS NG   ++   F  ++ S  
Sbjct: 316 TNSLIDMYSKCKDVKRAEHVFKAIPERDLVSWNAMISGYSQNGHSREAQHLFRQLLQSYS 375

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-------LFEGLKNPYLVSC-- 118
             +  T++ +L +    + L+   SIH   +K G  ++       +   +    LV+C  
Sbjct: 376 QCSLSTLLAILPSCDSSEFLQFGESIHCWQLKLGFANNPLAVNSLMLMYINCGDLVACFS 435

Query: 119 --------------NAIVAGFINNKLFQQAVLLFNFFR-GSGLVPNAVTMLTVIRGCVAL 163
                         N ++AG   N  F +A+  FN  R    +  ++V +  VI  C  L
Sbjct: 436 LLQTVSAAADIVCWNTVMAGCTQNGHFWEALKAFNLMRQDPDVCHDSVALFNVISACGNL 495

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
                   +HGL +K  +  D+ V N+++ MY    +++ A  IF     +++ SW  M+
Sbjct: 496 ELLFAGGSLHGLALKTLMESDIRVQNALITMYGRCGEIENARIIFGFSCNRNLCSWNCMI 555

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
             F   +    AL++F  +       + + ++ ++S    LG L+ GKQ+H  V+   LQ
Sbjct: 556 SAFSQNKDGRRALELFCHIEFEP---NEITIVGILSACTQLGVLRHGKQIHGHVIRSRLQ 612

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
               +S ++  MYS CG LD++  +F    E+S+ +W ++IS +  +    +A+  F +M
Sbjct: 613 GNSFVSAALEDMYSNCGRLDTAFQIFQSSPERSVAAWNSMISAFGFHSNGGKAIELFHEM 672

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN-CLISSYSKCG 402
           R+  T    S T +S+L+A      +   L  +    E       +  + C++    + G
Sbjct: 673 RECGTRPTKS-TFISLLSACSHSGLVNEGLWYYSNMLELFNVEADTEHHVCMVDMLGRAG 731

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
            +  AY    +M    +   W  ++     +G  +    +   + E  E  +   Y+S+ 
Sbjct: 732 RLGEAYEFIRQMPTQPEPGVWGALLSACSYHGDLKMGREVAELLFEL-EPENVGYYISLS 790

Query: 463 NACGHAGLTNDGLVIFNQMIEENKVKPS 490
           N    AG   D + +   + ++   KP+
Sbjct: 791 NMYVAAGRWKDAVELRRIIQDKGLKKPA 818


>gi|15233590|ref|NP_193861.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207660|sp|Q9STE1.1|PP333_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21300
 gi|3402749|emb|CAA20195.1| putative protein [Arabidopsis thaliana]
 gi|7268926|emb|CAB79129.1| putative protein [Arabidopsis thaliana]
 gi|332659037|gb|AEE84437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 857

 Score =  258 bits (660), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 154/554 (27%), Positives = 287/554 (51%), Gaps = 29/554 (5%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           +S L+  Y + GKI     LFD + +K+ V W+++++GY+  G  +  +K FS M +  +
Sbjct: 176 ASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQI 235

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMV----------------------KFGLESD 105
            PN+ T   VL   A    ++L   +HGL+V                      +F   S 
Sbjct: 236 SPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASK 295

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           LF  +     V+ N +++G++ + L ++++  F     SG++P+A+T  +++       +
Sbjct: 296 LFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFEN 355

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
              C+ IH   ++  + LD+ + ++++D Y     +  A  IF +    DV+ +T M+  
Sbjct: 356 LEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISG 415

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           ++      D+L++FR + K +I  + + L++++ V  IL  LK G++LH  ++  G  + 
Sbjct: 416 YLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNR 475

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
             +  ++I MY+KCG ++ +  +F +++++ +VSW ++I+   Q+     A++ F   RQ
Sbjct: 476 CNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIF---RQ 532

Query: 346 EKTDSV--DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
                +  D +++ + L+A   L +      +HG   +         ++ LI  Y+KCGN
Sbjct: 533 MGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGN 592

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTE-TGEVPDSSTYLSIL 462
           +  A  VF+ M   +++VSWN+II   G +G  + +L L+H+M E +G  PD  T+L I+
Sbjct: 593 LKAAMNVFKTMK-EKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEII 651

Query: 463 NACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMG 522
           ++C H G  ++G+  F  M E+  ++P QEHY CVVDL  RAG L++A      +     
Sbjct: 652 SSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPD 711

Query: 523 PNIWRALLSGCVLH 536
             +W  LL  C LH
Sbjct: 712 AGVWGTLLGACRLH 725



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 152/590 (25%), Positives = 283/590 (47%), Gaps = 39/590 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFD--EIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           D Y   ++L  Y   G   +   +F   ++   ++  W+ +I  +  NG   +++  +  
Sbjct: 69  DSYTDERILGMYAMCGSFSDCGKMFYRLDLRRSSIRPWNSIISSFVRNGLLNQALAFYFK 128

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLE-------------------LARSIHGLMVKFG- 101
           M+  G+ P+  T   ++ A   L+N +                   +A S+    +++G 
Sbjct: 129 MLCFGVSPDVSTFPCLVKACVALKNFKGIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGK 188

Query: 102 --LESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
             + S LF+ +     V  N ++ G+         +  F+  R   + PNAVT   V+  
Sbjct: 189 IDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSV 248

Query: 160 CVALGSRALCEL---IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
           C    S+ L +L   +HGL +  G+  + S+ NS+L MYS     D A ++FR M   D 
Sbjct: 249 C---ASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADT 305

Query: 217 ISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQ 276
           ++W  M+  +V      ++L  F EM  S ++ D +   +L+   +   +L+  KQ+H  
Sbjct: 306 VTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCY 365

Query: 277 VVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
           ++   +  ++ L++++I  Y KC  +  ++++F+Q     +V +TA+ISGY+ NG   ++
Sbjct: 366 IMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDS 425

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
           L  F  + + K  S + ITLVSIL   G L AL++  +LHG   + GF    ++   +I 
Sbjct: 426 LEMFRWLVKVKI-SPNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNIGCAVID 484

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
            Y+KCG ++LAY +FE +   RD+VSWN++I     + +   A+ ++ +M  +G   D  
Sbjct: 485 MYAKCGRMNLAYEIFERLS-KRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCV 543

Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK 516
           +  + L+AC +    + G  I   MI+ +           ++D+ A+ G L  A  +   
Sbjct: 544 SISAALSACANLPSESFGKAIHGFMIKHSLASDVYSE-STLIDMYAKCGNLKAAMNVFKT 602

Query: 517 LLEGMGPNI--WRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFL 564
           + E    NI  W ++++ C  H G+ +D+  L     +K  I+   I+FL
Sbjct: 603 MKEK---NIVSWNSIIAACGNH-GKLKDSLCLFHEMVEKSGIRPDQITFL 648



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 122/481 (25%), Positives = 240/481 (49%), Gaps = 24/481 (4%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           LLS Y K G+  +A  LF  +   + V+W+ +I GY  +G  E+S+  F  M+ SG+LP+
Sbjct: 280 LLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPD 339

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPYL------------V 116
           + T   +L + +  +NLE  + IH  +++  +  D+F    L + Y              
Sbjct: 340 AITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFS 399

Query: 117 SCN--------AIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            CN        A+++G+++N L+  ++ +F +     + PN +T+++++     L +  L
Sbjct: 400 QCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKL 459

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
              +HG  IK G     ++  +V+DMY+    ++ A +IF  +  +D++SW  M+     
Sbjct: 460 GRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQ 519

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
            +    A+ IFR+M  S I  D V++   +S  A L     GK +H  ++   L S++  
Sbjct: 520 SDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVYS 579

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
            +++I MY+KCG+L ++ +VF  + EK++VSW +II+    +G  +++L  F +M ++  
Sbjct: 580 ESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSG 639

Query: 349 DSVDSITLVSILTASGELAALEICLQ-LHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
              D IT + I+++   +  ++  ++    +  + G    +    C++  + + G +  A
Sbjct: 640 IRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEA 699

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
           Y   + M F  D   W T++    ++ + E A     K+ +  +  +S  Y+ I NA  +
Sbjct: 700 YETVKSMPFPPDAGVWGTLLGACRLHKNVELAEVASSKLMDL-DPSNSGYYVLISNAHAN 758

Query: 468 A 468
           A
Sbjct: 759 A 759



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 156/324 (48%), Gaps = 24/324 (7%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D + +S L+  YFK   +  A+N+F +    +VV ++ +I GY  NG +  S++ F  +
Sbjct: 373 LDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWL 432

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES------------------ 104
           +   + PN  T+V +L     L  L+L R +HG ++K G ++                  
Sbjct: 433 VKVKISPNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRM 492

Query: 105 ----DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
               ++FE L    +VS N+++     +     A+ +F     SG+  + V++   +  C
Sbjct: 493 NLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSAC 552

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             L S +  + IHG  IK  L  DV   ++++DMY+   +L AA+ +F+ M+ K+++SW 
Sbjct: 553 ANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWN 612

Query: 221 RMMGLFVDFEYAGDALKIFREM-RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
            ++    +     D+L +F EM  KS I  D +  L +IS    +GD+  G +    +  
Sbjct: 613 SIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTE 672

Query: 280 G-GLQSELRLSNSIIAMYSKCGDL 302
             G+Q +      ++ ++ + G L
Sbjct: 673 DYGIQPQQEHYACVVDLFGRAGRL 696



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 123/275 (44%), Gaps = 16/275 (5%)

Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQ--ITEKSLVSWTAII 324
           L++GKQ+HA +++  +  +      I+ MY+ CG       +F +  +   S+  W +II
Sbjct: 51  LRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRRSSIRPWNSII 110

Query: 325 SGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGF 384
           S +V+NG   +AL  + KM      S D  T   ++ A   L   +    L       G 
Sbjct: 111 SSFVRNGLLNQALAFYFKMLCFGV-SPDVSTFPCLVKACVALKNFKGIDFLSDTVSSLGM 169

Query: 385 PRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH 444
                V + LI +Y + G +D+   +F+ +   +D V WN ++ GY   G  ++ +  + 
Sbjct: 170 DCNEFVASSLIKAYLEYGKIDVPSKLFDRV-LQKDCVIWNVMLNGYAKCGALDSVIKGFS 228

Query: 445 KMTETGEVPDSSTYLSILNACGHA-----GLTNDGLVIFNQMIEENKVKPSQEHYGCVVD 499
            M      P++ T+  +L+ C        G+   GLV+ + +  E  +K S      ++ 
Sbjct: 229 VMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNS------LLS 282

Query: 500 LLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCV 534
           + ++ G   DAS L  +++       W  ++SG V
Sbjct: 283 MYSKCGRFDDASKLF-RMMSRADTVTWNCMISGYV 316


>gi|302801269|ref|XP_002982391.1| hypothetical protein SELMODRAFT_116290 [Selaginella moellendorffii]
 gi|300149983|gb|EFJ16636.1| hypothetical protein SELMODRAFT_116290 [Selaginella moellendorffii]
          Length = 779

 Score =  258 bits (659), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 167/559 (29%), Positives = 277/559 (49%), Gaps = 31/559 (5%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D    + L+  Y K+G + EA+ +  E+P+++V+SW+I+I GY+ +G  ++ ++    M
Sbjct: 190 LDTSLGNALVDMYCKTGGVDEADVVLREMPKRDVISWNIMISGYAQSGDCKEGLRCLWRM 249

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------LF 107
              GL P   T   +L A +  ++L   +SIH  +V  GL+ D                 
Sbjct: 250 QQDGLSPTKVTYATLLNACSSEEDLGEGKSIHRSVVDMGLDRDEVVKSFLLGMYGKCGSL 309

Query: 108 EGLKNPY-------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
           E +K           ++ N I+  +       QA+  F   +  G+  +AVT + ++  C
Sbjct: 310 EDVKRSSCEVHERNTIAWNTIIGAYARYSDHFQALRSFQQMQLEGVKADAVTFVLMLGTC 369

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
            +    A   L+H    +LG    + V+NS+  MY+    LDAA ++F EM  ++ +SW 
Sbjct: 370 SSPAHLAQGILLHDWISQLGF-ESIIVHNSLTAMYAKCGSLDAARKMFEEMPSRNSVSWN 428

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            +M   +      DA K F+ M+      D V  ++++       + K G  +H  VV  
Sbjct: 429 SLMSAAIQHGCHADAHKFFQRMKLEGSRPDEVTCISMLDACTKQANAKEGSSIHQMVVES 488

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           G      ++N++I MY+K GD +++R+VF+ + E++ VSW  I++ YV+ G  R+A+  F
Sbjct: 489 GFDKRTGVANALIFMYAKLGDHEAARNVFDAMAERNTVSWNTILAAYVEKGLNRDAVEMF 548

Query: 341 IKMRQEKTDSVDSITLVSILTA-SGELAALEICLQLHGIAFEAGFP-RYRSV-QNCLISS 397
            KM   +    D +T V+ L A SG    L     +HG   + GF  R  +V    L++ 
Sbjct: 549 WKMDVAR----DKVTYVAALDACSGLAGGLAHGKLIHGYMLDHGFSNRLDTVAATALVNM 604

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           Y KCG++  A  +F+ M   RDVV+W ++I  Y  +   E AL L   M + G   D   
Sbjct: 605 YGKCGSLQEARKIFDGM-LHRDVVTWTSLIVAYAQHSEIEQALKLVKIMEQEGVKVDDVV 663

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL 517
           +LSIL+ C H+GL  +G   F  MI++  + P  EHY C++D+L RAG L  A  L  +L
Sbjct: 664 FLSILSGCDHSGLLEEGCKYFVSMIDDYGISPRLEHYNCIIDVLGRAGHLDLAEKLVDRL 723

Query: 518 LEGMGPNIWRALLSGCVLH 536
                  +W  LL+ C +H
Sbjct: 724 PSRSDSKVWMTLLAACRMH 742



 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 138/494 (27%), Positives = 237/494 (47%), Gaps = 33/494 (6%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHE--KSMKAFSHMMLSGLLPNSF 72
           Y K G +  A  +F ++   +V +WS ++  Y+ N  ++  ++++ +  M L G+ P+S 
Sbjct: 2   YGKCGDLDAASEVFGKLDPLHVAAWSALLGAYA-NSENDAVQALELYKRMQLEGVRPDSV 60

Query: 73  TMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFEGL 110
           T V  L A      L   R +H  + + GLE+D                      LF  +
Sbjct: 61  TFVTCLKACTVEGALGDGRKVHAHIRELGLETDIYAANALINMYGKCRSPEDAFQLFSRM 120

Query: 111 KNPYLVSCNAIVAGFIN-NKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALC 169
           ++P +VS  +++  F     L +++VLLF      G+ PN +TM+ V+R C     R   
Sbjct: 121 ESPNVVSWTSVIGNFAQYGHLGRESVLLFRKMELEGIRPNLITMVAVLRACNLTDGRQ-- 178

Query: 170 ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDF 229
             +HG  ++ G+ LD S+ N+++DMY     +D A  + REM  +DVISW  M+  +   
Sbjct: 179 --VHGYVLEAGMSLDTSLGNALVDMYCKTGGVDEADVVLREMPKRDVISWNIMISGYAQS 236

Query: 230 EYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLS 289
               + L+    M++  +    V    L++  +   DL  GK +H  VV  GL  +  + 
Sbjct: 237 GDCKEGLRCLWRMQQDGLSPTKVTYATLLNACSSEEDLGEGKSIHRSVVDMGLDRDEVVK 296

Query: 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD 349
           + ++ MY KCG L+  +    ++ E++ ++W  II  Y +     +AL  F +M+ E   
Sbjct: 297 SFLLGMYGKCGSLEDVKRSSCEVHERNTIAWNTIIGAYARYSDHFQALRSFQQMQLEGVK 356

Query: 350 SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYI 409
           + D++T V +L      A L   + LH    + GF     V N L + Y+KCG++D A  
Sbjct: 357 A-DAVTFVLMLGTCSSPAHLAQGILLHDWISQLGFESI-IVHNSLTAMYAKCGSLDAARK 414

Query: 410 VFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAG 469
           +FEEM   R+ VSWN+++     +G    A   + +M   G  PD  T +S+L+AC    
Sbjct: 415 MFEEMPS-RNSVSWNSLMSAAIQHGCHADAHKFFQRMKLEGSRPDEVTCISMLDACTKQA 473

Query: 470 LTNDGLVIFNQMIE 483
              +G  I   ++E
Sbjct: 474 NAKEGSSIHQMVVE 487



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 160/592 (27%), Positives = 284/592 (47%), Gaps = 48/592 (8%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSING-FHEKSMKAFSHM 62
           D Y ++ L++ Y K    ++A  LF  +   NVVSW+ VI  ++  G    +S+  F  M
Sbjct: 93  DIYAANALINMYGKCRSPEDAFQLFSRMESPNVVSWTSVIGNFAQYGHLGRESVLLFRKM 152

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG--LESDLFEGLKNPY------ 114
            L G+ PN  TMV VL A     NL   R +HG +++ G  L++ L   L + Y      
Sbjct: 153 ELEGIRPNLITMVAVLRAC----NLTDGRQVHGYVLEAGMSLDTSLGNALVDMYCKTGGV 208

Query: 115 --------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                         ++S N +++G+  +   ++ +      +  GL P  VT  T++  C
Sbjct: 209 DEADVVLREMPKRDVISWNIMISGYAQSGDCKEGLRCLWRMQQDGLSPTKVTYATLLNAC 268

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
            +       + IH   + +GL  D  V + +L MY     L+   +   E+  ++ I+W 
Sbjct: 269 SSEEDLGEGKSIHRSVVDMGLDRDEVVKSFLLGMYGKCGSLEDVKRSSCEVHERNTIAWN 328

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++G +  +     AL+ F++M+   +  D V  + ++   +    L +G  LH  +   
Sbjct: 329 TIIGAYARYSDHFQALRSFQQMQLEGVKADAVTFVLMLGTCSSPAHLAQGILLHDWISQL 388

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           G +S + + NS+ AMY+KCG LD++R +F ++  ++ VSW +++S  +Q+GC  +A   F
Sbjct: 389 GFES-IIVHNSLTAMYAKCGSLDAARKMFEEMPSRNSVSWNSLMSAAIQHGCHADAHKFF 447

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            +M+ E +   D +T +S+L A  + A  +    +H +  E+GF +   V N LI  Y+K
Sbjct: 448 QRMKLEGSRP-DEVTCISMLDACTKQANAKEGSSIHQMVVESGFDKRTGVANALIFMYAK 506

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
            G+ + A  VF+ M   R+ VSWNTI+  Y   G    A+ ++ KM       D  TY++
Sbjct: 507 LGDHEAARNVFDAMA-ERNTVSWNTILAAYVEKGLNRDAVEMFWKMDVA---RDKVTYVA 562

Query: 461 ILNAC-GHAGLTNDGLVIFNQMIEE---NKVKPSQEHYGCVVDLLARAGCLSDASGLAGK 516
            L+AC G AG    G +I   M++    N++         +V++  + G L +A     K
Sbjct: 563 ALDACSGLAGGLAHGKLIHGYMLDHGFSNRLDTVAA--TALVNMYGKCGSLQEAR----K 616

Query: 517 LLEGMGPN---IWRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFLN 565
           + +GM       W +L+     H    + A  L    +++G +K+  + FL+
Sbjct: 617 IFDGMLHRDVVTWTSLIVAYAQH-SEIEQALKLVKIMEQEG-VKVDDVVFLS 666



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 110/468 (23%), Positives = 217/468 (46%), Gaps = 27/468 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D    S LL  Y K G +++ +    E+ E+N ++W+ +I  Y+    H +++++F  M 
Sbjct: 292 DEVVKSFLLGMYGKCGSLEDVKRSSCEVHERNTIAWNTIIGAYARYSDHFQALRSFQQMQ 351

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES------------------- 104
           L G+  ++ T V +L   +   +L     +H  + + G ES                   
Sbjct: 352 LEGVKADAVTFVLMLGTCSSPAHLAQGILLHDWISQLGFESIIVHNSLTAMYAKCGSLDA 411

Query: 105 --DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA 162
              +FE + +   VS N++++  I +     A   F   +  G  P+ VT ++++  C  
Sbjct: 412 ARKMFEEMPSRNSVSWNSLMSAAIQHGCHADAHKFFQRMKLEGSRPDEVTCISMLDACTK 471

Query: 163 LGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
             +      IH + ++ G      V N+++ MY+ L D +AA  +F  M  ++ +SW  +
Sbjct: 472 QANAKEGSSIHQMVVESGFDKRTGVANALIFMYAKLGDHEAARNVFDAMAERNTVSWNTI 531

Query: 223 MGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL 282
           +  +V+     DA+++F +M  +R     VA L+  S   + G L  GK +H  ++  G 
Sbjct: 532 LAAYVEKGLNRDAVEMFWKMDVARDKVTYVAALDACS--GLAGGLAHGKLIHGYMLDHGF 589

Query: 283 QSELRL--SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
            + L    + +++ MY KCG L  +R +F+ +  + +V+WT++I  Y Q+    +AL + 
Sbjct: 590 SNRLDTVAATALVNMYGKCGSLQEARKIFDGMLHRDVVTWTSLIVAYAQHSEIEQAL-KL 648

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEI-CLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           +K+ +++   VD +  +SIL+       LE  C     +  + G        NC+I    
Sbjct: 649 VKIMEQEGVKVDDVVFLSILSGCDHSGLLEEGCKYFVSMIDDYGISPRLEHYNCIIDVLG 708

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMT 447
           + G++DLA  + + +    D   W T++    ++G+ E       ++T
Sbjct: 709 RAGHLDLAEKLVDRLPSRSDSKVWMTLLAACRMHGNPERGKRAARRIT 756



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 156/292 (53%), Gaps = 8/292 (2%)

Query: 194 MYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY-AGDALKIFREMRKSRIICDTV 252
           MY    DLDAA ++F +++   V +W+ ++G + + E  A  AL++++ M+   +  D+V
Sbjct: 1   MYGKCGDLDAASEVFGKLDPLHVAAWSALLGAYANSENDAVQALELYKRMQLEGVRPDSV 60

Query: 253 ALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQI 312
             +  +    + G L  G+++HA +   GL++++  +N++I MY KC   + +  +F+++
Sbjct: 61  TFVTCLKACTVEGALGDGRKVHAHIRELGLETDIYAANALINMYGKCRSPEDAFQLFSRM 120

Query: 313 TEKSLVSWTAIISGYVQNG-CAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEI 371
              ++VSWT++I  + Q G   RE++  F KM  E     + IT+V++L A      L  
Sbjct: 121 ESPNVVSWTSVIGNFAQYGHLGRESVLLFRKMELEGIRP-NLITMVAVLRACN----LTD 175

Query: 372 CLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYG 431
             Q+HG   EAG     S+ N L+  Y K G VD A +V  EM   RDV+SWN +I GY 
Sbjct: 176 GRQVHGYVLEAGMSLDTSLGNALVDMYCKTGGVDEADVVLREMP-KRDVISWNIMISGYA 234

Query: 432 VNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIE 483
            +G  +  L    +M + G  P   TY ++LNAC       +G  I   +++
Sbjct: 235 QSGDCKEGLRCLWRMQQDGLSPTKVTYATLLNACSSEEDLGEGKSIHRSVVD 286


>gi|297804022|ref|XP_002869895.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315731|gb|EFH46154.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 853

 Score =  258 bits (658), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 167/622 (26%), Positives = 310/622 (49%), Gaps = 68/622 (10%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           + + +S L+  Y + GKI  A  LFD + +K+ V W+++++GY+  G  +  +K FS M 
Sbjct: 168 NEFVASSLIKAYLEYGKIDVAGKLFDRVLQKDCVIWNVMLNGYAKCGASDSVIKGFSLMR 227

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG-LKNPYL------- 115
           +  + PN+ T   VL   A    ++L   +HGL+V  GL+   FEG +KN  L       
Sbjct: 228 MDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGLD---FEGSIKNSLLSMYSKCG 284

Query: 116 -----------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                            V+ N +++G++ + L +++++ F     SG++P+A+T  +++ 
Sbjct: 285 RFDDAIKLFRMMSRADTVTWNCMISGYVQSGLMEESLIFFYEMISSGVLPDAITFSSLLP 344

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
                 +   C  IH   ++  + LD+ + ++++D Y     +  A +IF +    DV+ 
Sbjct: 345 SVSKFENLEYCRQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQKIFSQCNSVDVVV 404

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           +T M+  ++      DAL++FR + K +I  + + L++++ V   L  LK G++LH  ++
Sbjct: 405 FTAMISGYLHNGLNIDALEMFRWLVKVKISPNEITLVSILPVIGGLLALKLGRELHGFII 464

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
             G  +   +  ++I MY+KCG ++ +  +F +++++ +VSW ++I+   Q+     A++
Sbjct: 465 KKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFGRLSKRDIVSWNSMITRCAQSDNPSAAID 524

Query: 339 QFIKMRQEKTDSV--DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
            F   RQ     +  D +++ + L+A   L +      +HG   +         ++ LI 
Sbjct: 525 IF---RQMGVSGICFDCVSISAALSACANLPSESFGKAIHGFMIKHSLALDVYSESTLID 581

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTE-TGEVPDS 455
            Y+KCGN+  A  VF+ M   +++VSWN+II  YG +G  + +L L+H+M E +G  PD 
Sbjct: 582 MYAKCGNLKAAMNVFDTMK-EKNIVSWNSIIAAYGNHGKLKDSLCLFHEMVEKSGNRPDQ 640

Query: 456 STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAG 515
            T+L I++ C H G  ++G+  F  M ++  ++P QEHY CVVDL  RAG LS+A     
Sbjct: 641 ITFLEIISLCCHVGDVDEGVRFFRSMTQDYGIQPQQEHYACVVDLFGRAGRLSEAYETVK 700

Query: 516 KLLEGMGPNIWRALLSGCVLH---------------------------------VGRFQD 542
            +       +W  LL    LH                                  G ++ 
Sbjct: 701 SMPFPPDAGVWGTLLGASRLHKNVELAKVASSRLMDLDPWNSGYYVLISNAHANTGEWES 760

Query: 543 AEALRSGSQKKGIIKIPGISFL 564
              +RS  +++ + KIPG S++
Sbjct: 761 VTKVRSLMKEREVQKIPGYSWI 782



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 116/402 (28%), Positives = 195/402 (48%), Gaps = 9/402 (2%)

Query: 119 NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIK 178
           N+I++ F+   L  QA+  +      G+ P+  T   +++ CVAL +    E +      
Sbjct: 103 NSIISSFVRMGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIEFLSDTVSS 162

Query: 179 LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKI 238
           LG+  +  V +S++  Y     +D A ++F  +  KD + W  M+  +     +   +K 
Sbjct: 163 LGMDCNEFVASSLIKAYLEYGKIDVAGKLFDRVLQKDCVIWNVMLNGYAKCGASDSVIKG 222

Query: 239 FREMRKSRIICDTVALLNLISVNA--ILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMY 296
           F  MR  +I  + V    ++SV A  +L DL  G QLH  VV+ GL  E  + NS+++MY
Sbjct: 223 FSLMRMDQISPNAVTFDCVLSVCASKLLIDL--GVQLHGLVVVSGLDFEGSIKNSLLSMY 280

Query: 297 SKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITL 356
           SKCG  D +  +F  ++    V+W  +ISGYVQ+G   E+L  F +M        D+IT 
Sbjct: 281 SKCGRFDDAIKLFRMMSRADTVTWNCMISGYVQSGLMEESLIFFYEMISSGVLP-DAITF 339

Query: 357 VSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGF 416
            S+L +  +   LE C Q+H             + + LI +Y KC  V +A  +F +   
Sbjct: 340 SSLLPSVSKFENLEYCRQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQKIFSQCNS 399

Query: 417 LRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLV 476
           + DVV +  +I GY  NG    AL ++  + +    P+  T +SIL   G       G  
Sbjct: 400 V-DVVVFTAMISGYLHNGLNIDALEMFRWLVKVKISPNEITLVSILPVIGGLLALKLGRE 458

Query: 477 IFNQMIEENKVKPSQEHYGC-VVDLLARAGCLSDASGLAGKL 517
           +   +I+  K   ++ + GC V+D+ A+ G ++ A  + G+L
Sbjct: 459 LHGFIIK--KGFDNRCNIGCAVIDMYAKCGRMNLAYEIFGRL 498



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 157/327 (48%), Gaps = 24/327 (7%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D + +S L+  YFK   +  A+ +F +    +VV ++ +I GY  NG +  +++ F  +
Sbjct: 369 LDIFLTSALIDAYFKCRGVSMAQKIFSQCNSVDVVVFTAMISGYLHNGLNIDALEMFRWL 428

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES------------------ 104
           +   + PN  T+V +L    GL  L+L R +HG ++K G ++                  
Sbjct: 429 VKVKISPNEITLVSILPVIGGLLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRM 488

Query: 105 ----DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
               ++F  L    +VS N+++     +     A+ +F     SG+  + V++   +  C
Sbjct: 489 NLAYEIFGRLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICFDCVSISAALSAC 548

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             L S +  + IHG  IK  L LDV   ++++DMY+   +L AA+ +F  M+ K+++SW 
Sbjct: 549 ANLPSESFGKAIHGFMIKHSLALDVYSESTLIDMYAKCGNLKAAMNVFDTMKEKNIVSWN 608

Query: 221 RMMGLFVDFEYAGDALKIFREM-RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
            ++  + +     D+L +F EM  KS    D +  L +IS+   +GD+  G +    +  
Sbjct: 609 SIIAAYGNHGKLKDSLCLFHEMVEKSGNRPDQITFLEIISLCCHVGDVDEGVRFFRSMTQ 668

Query: 280 G-GLQSELRLSNSIIAMYSKCGDLDSS 305
             G+Q +      ++ ++ + G L  +
Sbjct: 669 DYGIQPQQEHYACVVDLFGRAGRLSEA 695



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 160/335 (47%), Gaps = 7/335 (2%)

Query: 131 FQQAVLLFNFFRG-SGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNN 189
           +++++ L N +R     +P  +++L  ++ C  L      + +H   I   +  D   + 
Sbjct: 13  YKKSLPLRNSYRFLEETLPRRLSLL--LQDCSNLTLLRQGKQVHAFVIVNRISGDSYTDE 70

Query: 190 SVLDMYSCLMDLDAAIQIFREMECK--DVISWTRMMGLFVDFEYAGDALKIFREMRKSRI 247
            +L MY+         ++F  ++ +   +  W  ++  FV       AL  + +M    +
Sbjct: 71  RILGMYAMCGSFSNCGKMFYRLDSRLSSIRPWNSIISSFVRMGLLNQALAFYFKMLCFGV 130

Query: 248 ICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRS 307
             D      L+     L + K  + L   V   G+     +++S+I  Y + G +D +  
Sbjct: 131 SPDVSTFPCLVKACVALKNFKGIEFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVAGK 190

Query: 308 VFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELA 367
           +F+++ +K  V W  +++GY + G +   +  F  MR ++  S +++T   +L+      
Sbjct: 191 LFDRVLQKDCVIWNVMLNGYAKCGASDSVIKGFSLMRMDQI-SPNAVTFDCVLSVCASKL 249

Query: 368 ALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
            +++ +QLHG+   +G     S++N L+S YSKCG  D A  +F  M    D V+WN +I
Sbjct: 250 LIDLGVQLHGLVVVSGLDFEGSIKNSLLSMYSKCGRFDDAIKLFRMMS-RADTVTWNCMI 308

Query: 428 YGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
            GY  +G  E +L  +++M  +G +PD+ T+ S+L
Sbjct: 309 SGYVQSGLMEESLIFFYEMISSGVLPDAITFSSLL 343



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 124/275 (45%), Gaps = 16/275 (5%)

Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK--SLVSWTAII 324
           L++GKQ+HA V++  +  +      I+ MY+ CG   +   +F ++  +  S+  W +II
Sbjct: 47  LRQGKQVHAFVIVNRISGDSYTDERILGMYAMCGSFSNCGKMFYRLDSRLSSIRPWNSII 106

Query: 325 SGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGF 384
           S +V+ G   +AL  + KM      S D  T   ++ A   L   +    L       G 
Sbjct: 107 SSFVRMGLLNQALAFYFKMLCFGV-SPDVSTFPCLVKACVALKNFKGIEFLSDTVSSLGM 165

Query: 385 PRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH 444
                V + LI +Y + G +D+A  +F+ +   +D V WN ++ GY   G  ++ +  + 
Sbjct: 166 DCNEFVASSLIKAYLEYGKIDVAGKLFDRV-LQKDCVIWNVMLNGYAKCGASDSVIKGFS 224

Query: 445 KMTETGEVPDSSTYLSILNACGHA-----GLTNDGLVIFNQMIEENKVKPSQEHYGCVVD 499
            M      P++ T+  +L+ C        G+   GLV+ + +  E  +K S      ++ 
Sbjct: 225 LMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGLDFEGSIKNS------LLS 278

Query: 500 LLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCV 534
           + ++ G   DA  L  +++       W  ++SG V
Sbjct: 279 MYSKCGRFDDAIKLF-RMMSRADTVTWNCMISGYV 312


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  258 bits (658), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 169/551 (30%), Positives = 283/551 (51%), Gaps = 25/551 (4%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
            +K++S + K G   EA  +F+ +  K  V + I++ GY+ N     ++  F  MM   +
Sbjct: 82  QTKVISLFCKFGSNSEAARVFEHVELKLDVLYHIMLKGYAKNSSLGDALCFFLRMMCDEV 141

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF-------------------- 107
                    +L       +L+  R IHGL++  G ES+LF                    
Sbjct: 142 RLVVGDYACLLQLCGENLDLKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYK 201

Query: 108 --EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
             E +++  LVS   +VAG+  N   ++A+ L    + +G  P++VT+++++     + +
Sbjct: 202 MFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKA 261

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
             +   IHG   + G    V+V N++LDMY        A  +F+ M  K V+SW  M+  
Sbjct: 262 LRIGRSIHGYAFRSGFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDG 321

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
                 + +A   F +M     +   V ++ ++   A LGDL+RG  +H  +    L S 
Sbjct: 322 CAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSN 381

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           + + NS+I+MYSKC  +D + S+FN + EK+ V+W A+I GY QNGC +EALN F  M Q
Sbjct: 382 VSVMNSLISMYSKCKRVDIAASIFNNL-EKTNVTWNAMILGYAQNGCVKEALNLFC-MMQ 439

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
            +   +D  TLV ++TA  + +       +HG+A  A       V   L+  Y+KCG + 
Sbjct: 440 SQGIKLDCFTLVGVITALADFSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIK 499

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            A  +F+ M   R V++WN +I GYG +G G+  L L+++M +    P+  T+LS+++AC
Sbjct: 500 TARKLFDMMQ-ERHVITWNAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISAC 558

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI 525
            H+G   +GL++F  M E+  ++P+ +HY  +VDLL RAG L DA     ++    G ++
Sbjct: 559 SHSGFVEEGLLLFKSMQEDYYLEPTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKPGISV 618

Query: 526 WRALLSGCVLH 536
             A+L  C +H
Sbjct: 619 LGAMLGACKIH 629



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 117/402 (29%), Positives = 200/402 (49%), Gaps = 17/402 (4%)

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           IHGL I  G   ++ V  +V+ +Y+    +D A ++F  M+ KD++SWT ++  +    +
Sbjct: 167 IHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGH 226

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
           A  AL++  +M+++    D+V L++++   A +  L+ G+ +H      G +S + ++N+
Sbjct: 227 AKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVTNA 286

Query: 292 IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
           ++ MY KCG    +R VF  +  K++VSW  +I G  QNG + EA   F+KM  E  +  
Sbjct: 287 LLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDE-GEVP 345

Query: 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVF 411
             +T++ +L A   L  LE    +H +  +       SV N LIS YSKC  VD+A  +F
Sbjct: 346 TRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIF 405

Query: 412 EEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLT 471
             +   +  V+WN +I GY  NG  + AL L+  M   G   D  T + ++ A     + 
Sbjct: 406 NNLE--KTNVTWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITALADFSVN 463

Query: 472 NDGLVIFNQMIE---ENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRA 528
                I    +    +N V  S      +VD+ A+ G +  A  L   +++      W A
Sbjct: 464 RQAKWIHGLAVRACMDNNVFVST----ALVDMYAKCGAIKTARKLF-DMMQERHVITWNA 518

Query: 529 LLSGCVLH-VGRFQDAEALRSGSQ-KKGIIKIPGISFLNSTS 568
           ++ G   H VG+    E L   ++ +KG +K   I+FL+  S
Sbjct: 519 MIDGYGTHGVGK----ETLDLFNEMQKGAVKPNDITFLSVIS 556


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  258 bits (658), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 166/568 (29%), Positives = 282/568 (49%), Gaps = 59/568 (10%)

Query: 55  SMKAFSHM-MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-------- 105
           ++ AF+ M   SG  P   T   +L   A   +L   R++H  +   GL  +        
Sbjct: 208 ALAAFAAMSPASGSGPVLRTFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALA 267

Query: 106 --------------LFEGLKNPYLVSCNAIVAGFINNKLFQQAV-LLFNFFRGSGLVPNA 150
                         +F+ +     V+ NA+VAG+  N L + AV ++       G  P+A
Sbjct: 268 NMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDA 327

Query: 151 VTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFRE 210
           VT+++V+  C    +   C  +H   ++ G    V+V+ ++LD+Y     +D+A ++F  
Sbjct: 328 VTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDG 387

Query: 211 MECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG 270
           M+ ++ +SW  M+  + +   A +AL +F+ M    +    V++L  +     LG L  G
Sbjct: 388 MQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEG 447

Query: 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
           +++H  +V  GL+S + + N++I MY KC   D +  VF+++  K+ VSW A+I G  QN
Sbjct: 448 RRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQN 507

Query: 331 GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV 390
           G + +A+  F +M+ E     DS TLVSI+ A  +++       +HG +      +   V
Sbjct: 508 GSSEDAVRLFSRMQLENVKP-DSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQDVYV 566

Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
              LI  Y+KCG V +A  +F      R V++WN +I+GYG +G G+ A+ L+ +M  +G
Sbjct: 567 LTALIDMYAKCGRVSIARSLFNS-ARDRHVITWNAMIHGYGSHGSGKVAVELFEEMKSSG 625

Query: 451 EVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
           +VP+ +T+LS+L+AC HAGL ++G   F+ M E+  ++P  EHYG +VDLL RAG L +A
Sbjct: 626 KVPNETTFLSVLSACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLHEA 685

Query: 511 SGLAGKLLEGMGPNIWRALLSGCVLH---------------------------------V 537
                K+    G +++ A+L  C LH                                  
Sbjct: 686 WSFIQKMPMEPGISVYGAMLGACKLHKNVELAEESAQRIFELEPEEGVYHVLLANIYANA 745

Query: 538 GRFQDAEALRSGSQKKGIIKIPGISFLN 565
             ++D   +R+  +KKG+ K PG S + 
Sbjct: 746 SLWKDVARVRTAMEKKGLQKTPGWSIVQ 773



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 99/378 (26%), Positives = 187/378 (49%), Gaps = 24/378 (6%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS-G 66
           ++ L + Y K  +  +A  +FD +P ++ V+W+ ++ GY+ NG  E ++     M    G
Sbjct: 263 ATALANMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDG 322

Query: 67  LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--------------------- 105
             P++ T+V VL A A  Q L   R +H   V+ G +                       
Sbjct: 323 ERPDAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSAR 382

Query: 106 -LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
            +F+G+++   VS NA++ G+  N    +A+ LF    G G+    V++L  +  C  LG
Sbjct: 383 KVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELG 442

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
                  +H L +++GL  +V+V N+++ MY      D A Q+F E+  K  +SW  M+ 
Sbjct: 443 FLDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMIL 502

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
                  + DA+++F  M+   +  D+  L+++I   A + D  + + +H   +   L  
Sbjct: 503 GCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQ 562

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           ++ +  ++I MY+KCG +  +RS+FN   ++ +++W A+I GY  +G  + A+  F +M+
Sbjct: 563 DVYVLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAVELFEEMK 622

Query: 345 QEKTDSVDSITLVSILTA 362
                  +  T +S+L+A
Sbjct: 623 SSGK-VPNETTFLSVLSA 639



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 157/335 (46%), Gaps = 23/335 (6%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ +L  Y K G +  A  +FD + ++N VSW+ +I GY+ NG   +++  F  M+  G+
Sbjct: 365 STAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGV 424

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
                +++  L A   L  L+  R +H L+V+ GLES+                      
Sbjct: 425 DVTDVSVLAALHACGELGFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQ 484

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F+ L     VS NA++ G   N   + AV LF+  +   + P++ T++++I     +  
Sbjct: 485 VFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISD 544

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
                 IHG +I+L L  DV V  +++DMY+    +  A  +F     + VI+W  M+  
Sbjct: 545 PLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHG 604

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG-GLQS 284
           +        A+++F EM+ S  + +    L+++S  +  G +  G++  + +    GL+ 
Sbjct: 605 YGSHGSGKVAVELFEEMKSSGKVPNETTFLSVLSACSHAGLVDEGQEYFSSMKEDYGLEP 664

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVS 319
            +    +++ +  + G L  + S   ++  +  +S
Sbjct: 665 GMEHYGTMVDLLGRAGKLHEAWSFIQKMPMEPGIS 699



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 57/105 (54%), Gaps = 3/105 (2%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + L+  Y K G++  A +LF+   +++V++W+ +IHGY  +G  + +++ F  M 
Sbjct: 563 DVYVLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAVELFEEMK 622

Query: 64  LSGLLPNSFTMVGVLVAA--AGLQNLELARSIHGLMVKFGLESDL 106
            SG +PN  T + VL A   AGL + E       +   +GLE  +
Sbjct: 623 SSGKVPNETTFLSVLSACSHAGLVD-EGQEYFSSMKEDYGLEPGM 666


>gi|225438217|ref|XP_002263704.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49740-like [Vitis vinifera]
          Length = 729

 Score =  258 bits (658), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 174/621 (28%), Positives = 302/621 (48%), Gaps = 67/621 (10%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y+ + LLS   K G+I  A +LF++ P    V W+ +I G + N   E ++  F  M 
Sbjct: 118 DVYSWTTLLSACTKLGQIGYACHLFNQTPRMIPVVWNAIITGCAENKHTEIALNLFREMH 177

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG--LESDLFEGLKNPYL------ 115
             G+  + +T   VL +   L+ L+  R +H L++K G  + + +   L   Y       
Sbjct: 178 QLGVRHDKYTFASVL-SLCSLELLDFGREVHTLVIKTGFLVRASVINALLTMYFNSGKVA 236

Query: 116 ----------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                           ++ N ++ G  +    ++A+++F   + + L P  +T ++V+  
Sbjct: 237 DAYEVFEEAESTVHDDITFNVMIGGLASVGRDEEALIMFKEMQEACLRPTELTFVSVMSS 296

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C    S  +   +H   IK+G      V+N+ + MYS   +L A   +F  +E KD+ISW
Sbjct: 297 C---SSARVSHQVHAQAIKMGFEACTPVSNAAMTMYSSCGNLHAVHMVFDRLEEKDLISW 353

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
             ++  +    +   A+  F +M+++ I  D   + +L++ +     L+  K   A V  
Sbjct: 354 NIIIMNYAQGNFYRLAILAFLQMQRAGIEPDEFTIGSLLASSE---SLEIVKMFQALVSK 410

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            GL S++ +SN++++ +SK G ++ +  VFN ++  +L+SW  IISG++ NG   + L Q
Sbjct: 411 NGLNSKIEVSNALVSAFSKHGQIEQAYQVFNNMSSPNLISWNTIISGFLFNGFTLQGLEQ 470

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           F ++    T   ++ TL  +L+    ++AL    Q+HG    +G     S+ N LI+ Y+
Sbjct: 471 FYELLM-STLKPNAYTLSIVLSICASISALRHGKQIHGYILRSGVFSVTSLGNALITMYA 529

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV-PDSSTY 458
           KCG++D +  +F  M   RD+VSWN +I  Y  +G G+ A+  +  M ++G V PD +T+
Sbjct: 530 KCGDLDWSLRIFNVMNG-RDIVSWNAMISAYAQHGKGKEAVHFFKAMQDSGGVKPDQATF 588

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
            ++L+AC HAGL +DG  IFN M+ +   +P  +H  C+VDLL RAG L +A  L     
Sbjct: 589 TAVLSACSHAGLVDDGTRIFNSMVNDYGFEPGADHLSCIVDLLGRAGYLEEAERLINSKH 648

Query: 519 EGMGPNIWRALLSGCVLH---------------------------------VGRFQDAEA 545
             +  +IW  L S C  H                                  G++++A  
Sbjct: 649 LKIVSSIWWTLFSACAAHGNLRLGRIVAGFLLEIEQNDPAVYVLLSNIYAAAGQWEEAAN 708

Query: 546 LRSGSQKKGIIKIPGISFLNS 566
            R   QK  + K PG S++ S
Sbjct: 709 TRDLMQKTRVAKQPGCSWIGS 729



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 107/454 (23%), Positives = 195/454 (42%), Gaps = 49/454 (10%)

Query: 115 LVSCNAIVAGFINNKLFQQAVLLFNFFRGSG-LVPNAVTMLTVIRGCVALGSRALCELIH 173
           L+  N ++A    +     +V LF     S  L P+  T+ + +  C  L   A    +H
Sbjct: 17  LIKINQLLAELTRSHHNSASVQLFVQIHSSNYLKPDHFTLSSTLTACANLRYAASGNQLH 76

Query: 174 GLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG--------- 224
             +I+ GL     V N++L  Y+   DL +  ++F E+E  DV SWT ++          
Sbjct: 77  AYSIQTGLKAYTHVGNTLLSFYAKSKDLVSVQRVFNEIENPDVYSWTTLLSACTKLGQIG 136

Query: 225 ----LF------------------VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNA 262
               LF                   + ++   AL +FREM +  +  D     +++S+ +
Sbjct: 137 YACHLFNQTPRMIPVVWNAIITGCAENKHTEIALNLFREMHQLGVRHDKYTFASVLSLCS 196

Query: 263 ILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQI--TEKSLVSW 320
            L  L  G+++H  V+  G      + N+++ MY   G +  +  VF +   T    +++
Sbjct: 197 -LELLDFGREVHTLVIKTGFLVRASVINALLTMYFNSGKVADAYEVFEEAESTVHDDITF 255

Query: 321 TAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAF 380
             +I G    G   EAL  F +M QE       +T VS++++    ++  +  Q+H  A 
Sbjct: 256 NVMIGGLASVGRDEEALIMFKEM-QEACLRPTELTFVSVMSSC---SSARVSHQVHAQAI 311

Query: 381 EAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETAL 440
           + GF     V N  ++ YS CGN+   ++VF+ +   +D++SWN II  Y        A+
Sbjct: 312 KMGFEACTPVSNAAMTMYSSCGNLHAVHMVFDRLE-EKDLISWNIIIMNYAQGNFYRLAI 370

Query: 441 ALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDL 500
             + +M   G  PD  T  S+L +     +      +F  ++ +N +    E    +V  
Sbjct: 371 LAFLQMQRAGIEPDEFTIGSLLASSESLEIVK----MFQALVSKNGLNSKIEVSNALVSA 426

Query: 501 LARAGCLSDASGLAGKLLEGMGPNI--WRALLSG 532
            ++ G +  A  +   +     PN+  W  ++SG
Sbjct: 427 FSKHGQIEQAYQVFNNM---SSPNLISWNTIISG 457


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  258 bits (658), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 171/596 (28%), Positives = 281/596 (47%), Gaps = 57/596 (9%)

Query: 24  AENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAG 83
           AE LF  +PEKN VSW+ +++GY+  G  +K +K F  M       + FT+  VL   A 
Sbjct: 4   AERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCAN 63

Query: 84  LQNLELARSIHGLMVKFGLESDLFEG----------------------LKNPYLVSCNAI 121
             +L   + +H L ++ G E D F G                      ++NP +V+ +A+
Sbjct: 64  TGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAM 123

Query: 122 VAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGL 181
           + G       Q+A  LF+  R  G  PN  T+ +++     +G     + IHG   K G 
Sbjct: 124 ITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGF 183

Query: 182 ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFRE 241
             D  V+N ++ MY     ++   ++F  M   D++SW  ++  F D +  G   +IF +
Sbjct: 184 ESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQ 243

Query: 242 MRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGD 301
           M       +    ++++   + L D + GKQ+HA ++      +  +  +++ MY+K   
Sbjct: 244 MLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARC 303

Query: 302 LDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILT 361
           L+ +   F+++  + + SWT IISGY Q   A +A+  F +M++E     +  TL S L+
Sbjct: 304 LEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKP-NEYTLASCLS 362

Query: 362 ASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVV 421
               +A LE   QLH +A +AG      V + L+  Y KCG ++ A  +F+ +   RD+V
Sbjct: 363 GCSHMATLENGRQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGL-ISRDIV 421

Query: 422 SWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQM 481
           SWNTII GY  +G GE AL  +  M   G +PD +T++ +L+AC   GL  +G   F+ M
Sbjct: 422 SWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACSFMGLVEEGKKRFDSM 481

Query: 482 IEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH----- 536
            +   + PS EHY C+VD+L RAG  ++      ++       IW  +L  C LH     
Sbjct: 482 SKIYGINPSIEHYACMVDILGRAGKFNEVKIFIEEMNLTPYSLIWETVLGACKLHGNVDF 541

Query: 537 ----------------------------VGRFQDAEALRSGSQKKGIIKIPGISFL 564
                                        GR+ D   +R+    +GI K PG S++
Sbjct: 542 GEKAAKKLFEMEPMMDSSYILLSNIFASKGRWDDVRNIRALMTSRGIKKEPGCSWV 597



 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 132/505 (26%), Positives = 233/505 (46%), Gaps = 47/505 (9%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           ID +    L+  Y K G + +A  +F +I   +VV+WS +I G    G  +++ + F  M
Sbjct: 84  IDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAMITGLDQQGHGQEAAELFHLM 143

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
              G  PN FT+  ++  A  + +L   +SIHG + K+G ESD                 
Sbjct: 144 RRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRCV 203

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +FE + NP LVS NA+++GF +++   +   +F      G  PN  T ++V+R C
Sbjct: 204 EDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSC 263

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
            +L      + +H   IK     D  V  +++DMY+    L+ A   F  +  +D+ SWT
Sbjct: 264 SSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWT 323

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++  +   + A  A+K FR+M++  I  +   L + +S  + +  L+ G+QLHA  V  
Sbjct: 324 VIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQLHAVAVKA 383

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           G   ++ + ++++ +Y KCG ++ + ++F  +  + +VSW  IISGY Q+G   +AL  F
Sbjct: 384 GHFGDIFVGSALVDLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQHGQGEKALEAF 443

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN-------- 392
             M  E     D  T + +L+A   +  +           E G  R+ S+          
Sbjct: 444 RMMLSEGI-MPDEATFIGVLSACSFMGLV-----------EEGKKRFDSMSKIYGINPSI 491

Query: 393 ----CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTE 448
               C++    + G  +   I  EEM      + W T++    ++G+ +       K+ E
Sbjct: 492 EHYACMVDILGRAGKFNEVKIFIEEMNLTPYSLIWETVLGACKLHGNVDFGEKAAKKLFE 551

Query: 449 TGEVPDSSTYLSILNACGHAGLTND 473
              + DSS Y+ + N     G  +D
Sbjct: 552 MEPMMDSS-YILLSNIFASKGRWDD 575



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 116/454 (25%), Positives = 204/454 (44%), Gaps = 20/454 (4%)

Query: 102 LESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
           L   LF G+     VS NA++ G+      ++ + LF   +      +  T+ TV++GC 
Sbjct: 3   LAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCA 62

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
             GS    +++H L ++ G  +D  +  S++DMYS    +  A+++F ++   DV++W+ 
Sbjct: 63  NTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSA 122

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+       +  +A ++F  MR+     +   L +L+S    +GDL+ G+ +H  +   G
Sbjct: 123 MITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYG 182

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
            +S+  +SN +I MY K   ++    VF  +T   LVSW A++SG+  +         F 
Sbjct: 183 FESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFY 242

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +M  E     +  T +S+L +   L   E   Q+H    +        V   L+  Y+K 
Sbjct: 243 QMLLEGFKP-NMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKA 301

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
             ++ A + F+ +   RD+ SW  II GY      E A+  + +M   G  P+  T  S 
Sbjct: 302 RCLEDAGVAFDRL-VNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASC 360

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYG------CVVDLLARAGCLSDASGLAG 515
           L+ C H     +G  +       + V     H+G       +VDL  + GC+  A  +  
Sbjct: 361 LSGCSHMATLENGRQL-------HAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFK 413

Query: 516 KLLEGMGPNI--WRALLSGCVLHVGRFQDAEALR 547
            L+     +I  W  ++SG   H    +  EA R
Sbjct: 414 GLI---SRDIVSWNTIISGYSQHGQGEKALEAFR 444



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 95/336 (28%), Positives = 161/336 (47%), Gaps = 12/336 (3%)

Query: 201 LDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISV 260
           ++ A ++F  M  K+ +SW  ++  +         LK+F +M++         L  ++  
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60

Query: 261 NAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSW 320
            A  G L+ GK LHA  +  G + +  L  S++ MYSKCG +  +  VF +I    +V+W
Sbjct: 61  CANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAW 120

Query: 321 TAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAF 380
           +A+I+G  Q G  +EA   F  MR+ K    +  TL S+++ +  +  L     +HG   
Sbjct: 121 SAMITGLDQQGHGQEAAELFHLMRR-KGARPNQFTLSSLVSTATNMGDLRYGQSIHGCIC 179

Query: 381 EAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETAL 440
           + GF     V N LI  Y K   V+    VFE M    D+VSWN ++ G+  +       
Sbjct: 180 KYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTN-PDLVSWNALLSGFYDSQTCGRGP 238

Query: 441 ALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCV--- 497
            ++++M   G  P+  T++S+L +C  + L +     F + +  + +K S +    V   
Sbjct: 239 RIFYQMLLEGFKPNMFTFISVLRSC--SSLLDPE---FGKQVHAHIIKNSSDDDDFVGTA 293

Query: 498 -VDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSG 532
            VD+ A+A CL DA G+A   L       W  ++SG
Sbjct: 294 LVDMYAKARCLEDA-GVAFDRLVNRDIFSWTVIISG 328


>gi|147801010|emb|CAN60118.1| hypothetical protein VITISV_016374 [Vitis vinifera]
          Length = 1166

 Score =  258 bits (658), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 162/555 (29%), Positives = 288/555 (51%), Gaps = 31/555 (5%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ L+S +     ++EA  +FD + E +++SW+ +I  Y+ +G   +S++ F  M     
Sbjct: 335 ANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHN 394

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL--------------------- 106
             NS T+  +L   + + NL+  R IHGL+VK GL+S++                     
Sbjct: 395 ETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAEL 454

Query: 107 -FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
            F+ +    L+S N+++A ++ +      + +       G V N VT  + +  C     
Sbjct: 455 VFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPEC 514

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
               +++H L I  G    + V N+++ MY  L  +  A ++ + M   D ++W  ++G 
Sbjct: 515 LIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGG 574

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDL-KRGKQLHAQVVLGGLQS 284
             + E   +A+K ++ +R+  I  + + +++++   +   DL K G  +HA +VL G +S
Sbjct: 575 HAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFES 634

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           +  + NS+I MY+KCGDL+SS  +F+ +  KS ++W A+++    +GC  EAL  F +MR
Sbjct: 635 DDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMR 694

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
               + +D  +    L A+  LA LE   QLHG+  + GF     V N  +  Y KCG +
Sbjct: 695 NVGVN-LDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEM 753

Query: 405 -DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
            D+  ++ + +   R  +SWN +I  +  +G  + A   +H+M + G  PD  T++S+L+
Sbjct: 754 HDVLKMLPQPIN--RSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLS 811

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
           AC H GL ++GL  ++ M  E  V P  EH  C++DLL R+G LS A G   ++   + P
Sbjct: 812 ACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEM--PVPP 869

Query: 524 N--IWRALLSGCVLH 536
           N   WR+LL+ C +H
Sbjct: 870 NDLAWRSLLAACRIH 884



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 149/564 (26%), Positives = 264/564 (46%), Gaps = 46/564 (8%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           + ++ L++ Y K G I+ A  +FDE+  +N  SWS ++ GY   G +E+++  F  M   
Sbjct: 130 FQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGL 189

Query: 66  GLLPNSFTMVGVLVAAAGLQNL--ELARSIHGLMVKFGLESD------------------ 105
           G+ PN F MV  L+ A        +    +HG +VK G+  D                  
Sbjct: 190 GVEPNGF-MVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVY 248

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               LFE + +  +VS  +++ G+ ++    + + ++   R  G+  N  T  TV   C 
Sbjct: 249 NAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCG 308

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            L  + L   + G  I+ G    VSV NS++ M+S    ++ A  +F  M   D+ISW  
Sbjct: 309 LLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNA 368

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+  +       ++L+ F  MR      ++  L +L+SV + + +LK G+ +H  VV  G
Sbjct: 369 MISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLG 428

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           L S + + N+++ +YS+ G  + +  VF  +TE+ L+SW ++++ YVQ+G   + L    
Sbjct: 429 LDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILA 488

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           ++ Q     ++ +T  S L A      L     +H +   AGF  +  V N L++ Y K 
Sbjct: 489 ELLQ-MGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKL 547

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G +  A  V + M    D V+WN +I G+  N     A+  Y  + E G   +  T +S+
Sbjct: 548 GMMMEAKKVLQTMP-QPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSV 606

Query: 462 LNACGHA-GLTNDGLVIFNQMI-----EENKVKPSQEHYGCVVDLLARAGCLSDASGLAG 515
           L AC     L   G+ I   ++      ++ VK S      ++ + A+ G L+ ++    
Sbjct: 607 LGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNS------LITMYAKCGDLNSSN---- 656

Query: 516 KLLEGMG---PNIWRALLSGCVLH 536
            + +G+G   P  W A+++    H
Sbjct: 657 YIFDGLGNKSPITWNAMVAANAHH 680



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 146/613 (23%), Positives = 290/613 (47%), Gaps = 52/613 (8%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + L+  Y   G +  A+ LF+E+P+ NVVSW+ ++ GYS +G   + +  +  M 
Sbjct: 230 DVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMR 289

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
             G+  N  T   V  +   L++  L   + G ++++G E                    
Sbjct: 290 QEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVE 349

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +F+ +    ++S NA+++ + ++ L ++++  F++ R      N+ T+ +++  C 
Sbjct: 350 EACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCS 409

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
           ++ +      IHGL +KLGL  +V + N++L +YS     + A  +F+ M  +D+ISW  
Sbjct: 410 SVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNS 469

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           MM  +V      D LKI  E+ +   + + V   + ++  +    L   K +HA +++ G
Sbjct: 470 MMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAG 529

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
               L + N+++ MY K G +  ++ V   + +   V+W A+I G+ +N    EA+  + 
Sbjct: 530 FHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAY- 588

Query: 342 KMRQEKTDSVDSITLVSILTA-SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
           K+ +EK    + IT+VS+L A S     L+  + +H      GF     V+N LI+ Y+K
Sbjct: 589 KLIREKGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAK 648

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CG+++ +  +F+ +G  +  ++WN ++     +G GE AL ++ +M   G   D  ++  
Sbjct: 649 CGDLNSSNYIFDGLGN-KSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSG 707

Query: 461 ILNACGHAGLTNDGLVIFNQMIE---ENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL 517
            L A  +  +  +G  +   +I+   E+ +  +       +D+  + G + D   +  + 
Sbjct: 708 GLAATANLAVLEEGQQLHGLVIKLGFESDLHVTN----AAMDMYGKCGEMHDVLKMLPQP 763

Query: 518 LEGMGPNIWRALLSGCVLHVGRFQDA-----EALRSGSQKKGIIKI-------------P 559
           +     + W  L+S    H G FQ A     E L+ G +   +  +              
Sbjct: 764 INRSRLS-WNILISAFARH-GCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDE 821

Query: 560 GISFLNSTSRDFG 572
           G+++ +S +R+FG
Sbjct: 822 GLAYYDSMTREFG 834



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 130/523 (24%), Positives = 236/523 (45%), Gaps = 63/523 (12%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           LL+ Y ++G+ ++AE +F  + E++++SW+ ++  Y  +G     +K  + ++  G + N
Sbjct: 439 LLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMN 498

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--------------------- 109
             T    L A +  + L  ++ +H L++  G    L  G                     
Sbjct: 499 HVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQ 558

Query: 110 -LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            +  P  V+ NA++ G   N+   +AV  +   R  G+  N +TM++V+  C A      
Sbjct: 559 TMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPDDL-- 616

Query: 169 CELIHGLTIKLGLIL-----DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
             L HG+ I   ++L     D  V NS++ MY+   DL+++  IF  +  K  I+W  M+
Sbjct: 617 --LKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMV 674

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
                     +ALKIF EMR   +  D  +    ++  A L  L+ G+QLH  V+  G +
Sbjct: 675 AANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFE 734

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC---AREALNQF 340
           S+L ++N+ + MY KCG++     +  Q   +S +SW  +IS + ++GC   ARE  ++ 
Sbjct: 735 SDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEM 794

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN-------- 392
           +K+  +     D +T VS+L+A             HG   + G   Y S+          
Sbjct: 795 LKLGPKP----DHVTFVSLLSACN-----------HGGLVDEGLAYYDSMTREFGVFPGI 839

Query: 393 ----CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTE 448
               C+I    + G +  A    +EM    + ++W +++    ++G+ E A      + E
Sbjct: 840 EHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLE 899

Query: 449 TGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEEN-KVKPS 490
             +  D S Y+   N C  +G   D   +  +M   N K +P+
Sbjct: 900 L-DPSDDSAYVLYSNVCATSGKWEDVENLRKEMGSNNIKKQPA 941



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 154/302 (50%), Gaps = 3/302 (0%)

Query: 157 IRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
           ++G   + S+   + +H   I   + L +   N++++MYS   +++ A  +F EM  ++ 
Sbjct: 101 LKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNE 160

Query: 217 ISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDL-KRGKQLHA 275
            SW+ M+  +V      +A+ +F +M    +  +   + +LI+  +  G +   G Q+H 
Sbjct: 161 ASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHG 220

Query: 276 QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
            VV  G+  ++ +  +++  Y   G + +++ +F ++ + ++VSWT+++ GY  +G   E
Sbjct: 221 FVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGE 280

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLI 395
            LN + +MRQE   S +  T  ++ ++ G L    +  Q+ G   + GF    SV N LI
Sbjct: 281 VLNVYQRMRQEGV-SGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLI 339

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
           S +S   +V+ A  VF+ M    D++SWN +I  Y  +G    +L  +H M       +S
Sbjct: 340 SMFSSFSSVEEACYVFDHMNEC-DIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNS 398

Query: 456 ST 457
           +T
Sbjct: 399 TT 400



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 124/239 (51%), Gaps = 10/239 (4%)

Query: 233 GDALKIFREMRKSR--IICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSN 290
           GD  K+F + + +   I C       L   + I   +  GK LHA  ++G +   +  +N
Sbjct: 75  GDIAKVFLQQQHTDYGIRCLNAVNFPLKGFSEITSQMA-GKALHAFCIVGSVNLGIFQTN 133

Query: 291 SIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDS 350
           ++I MYSK G+++ +R VF+++  ++  SW+ ++SGYV+ G   EA+  F +M     + 
Sbjct: 134 TLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEP 193

Query: 351 VDSITLVSILTA---SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
            +   + S++TA   SG +A  +   Q+HG   + G      V   L+  Y   G V  A
Sbjct: 194 -NGFMVASLITACSRSGYMA--DEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNA 250

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
             +FEEM    +VVSW +++ GY  +G+    L +Y +M + G   + +T+ ++ ++CG
Sbjct: 251 QKLFEEMP-DHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCG 308


>gi|15227623|ref|NP_178437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216181|sp|Q9ZQ74.1|PP146_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03380, mitochondrial; Flags: Precursor
 gi|4335760|gb|AAD17437.1| unknown protein [Arabidopsis thaliana]
 gi|330250600|gb|AEC05694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 689

 Score =  257 bits (657), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 163/560 (29%), Positives = 290/560 (51%), Gaps = 27/560 (4%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++KL+S Y   G  K+A  +FD+IPE +   W +++  Y +N    + +K +  +M  G 
Sbjct: 79  ATKLVSLYGFFGYTKDARLVFDQIPEPDFYLWKVMLRCYCLNKESVEVVKLYDLLMKHGF 138

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKF-GLESDLFEGLKNPY------------ 114
             +       L A   LQ+L+  + IH  +VK    ++ +  GL + Y            
Sbjct: 139 RYDDIVFSKALKACTELQDLDNGKKIHCQLVKVPSFDNVVLTGLLDMYAKCGEIKSAHKV 198

Query: 115 --------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
                   +V   +++AG++ N L ++ ++LFN  R + ++ N  T  T+I  C  L + 
Sbjct: 199 FNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIMACTKLSAL 258

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
              +  HG  +K G+ L   +  S+LDMY    D+  A ++F E    D++ WT M+  +
Sbjct: 259 HQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGY 318

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
                  +AL +F++M+   I  + V + +++S   ++ +L+ G+ +H   +  G+  + 
Sbjct: 319 THNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGCGLIENLELGRSVHGLSIKVGIW-DT 377

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            ++N+++ MY+KC     ++ VF   +EK +V+W +IISG+ QNG   EAL  F +M  E
Sbjct: 378 NVANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSE 437

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ--NCLISSYSKCGNV 404
              + + +T+ S+ +A   L +L +   LH  + + GF    SV     L+  Y+KCG+ 
Sbjct: 438 SV-TPNGVTVASLFSACASLGSLAVGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDP 496

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
             A ++F+ +   ++ ++W+ +I GYG  G    +L L+ +M +  + P+ ST+ SIL+A
Sbjct: 497 QSARLIFDTIE-EKNTITWSAMIGGYGKQGDTIGSLELFEEMLKKQQKPNESTFTSILSA 555

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           CGH G+ N+G   F+ M ++    PS +HY C+VD+LARAG L  A  +  K+       
Sbjct: 556 CGHTGMVNEGKKYFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQPDVR 615

Query: 525 IWRALLSGCVLHVGRFQDAE 544
            + A L GC +H  RF   E
Sbjct: 616 CFGAFLHGCGMH-SRFDLGE 634



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 145/507 (28%), Positives = 244/507 (48%), Gaps = 30/507 (5%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  D    + LL  Y K G+IK A  +F++I  +NVV W+ +I GY  N   E+ +  F+
Sbjct: 172 PSFDNVVLTGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFN 231

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE--SDLFEGLKNPY---- 114
            M  + +L N +T   +++A   L  L   +  HG +VK G+E  S L   L + Y    
Sbjct: 232 RMRENNVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCG 291

Query: 115 ----------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                           LV   A++ G+ +N    +A+ LF   +G  + PN VT+ +V+ 
Sbjct: 292 DISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCVTIASVLS 351

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYS-CLMDLDAAIQIFREMECKDVI 217
           GC  + +  L   +HGL+IK+G I D +V N+++ MY+ C  + DA      E E KD++
Sbjct: 352 GCGLIENLELGRSVHGLSIKVG-IWDTNVANALVHMYAKCYQNRDAKYVFEMESE-KDIV 409

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA-Q 276
           +W  ++  F       +AL +F  M    +  + V + +L S  A LG L  G  LHA  
Sbjct: 410 AWNSIISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFSACASLGSLAVGSSLHAYS 469

Query: 277 VVLGGL-QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
           V LG L  S + +  +++  Y+KCGD  S+R +F+ I EK+ ++W+A+I GY + G    
Sbjct: 470 VKLGFLASSSVHVGTALLDFYAKCGDPQSARLIFDTIEEKNTITWSAMIGGYGKQGDTIG 529

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAAL-EICLQLHGIAFEAGFPRYRSVQNCL 394
           +L  F +M +++    +S T  SIL+A G    + E       +  +  F        C+
Sbjct: 530 SLELFEEMLKKQQKPNES-TFTSILSACGHTGMVNEGKKYFSSMYKDYNFTPSTKHYTCM 588

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           +   ++ G ++ A  + E+M    DV  +   ++G G++   +    +  KM +     D
Sbjct: 589 VDMLARAGELEQALDIIEKMPIQPDVRCFGAFLHGCGMHSRFDLGEIVIKKMLDL-HPDD 647

Query: 455 SSTYLSILNACGHAGLTNDGLVIFNQM 481
           +S Y+ + N     G  N    + N M
Sbjct: 648 ASYYVLVSNLYASDGRWNQAKEVRNLM 674



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 127/462 (27%), Positives = 220/462 (47%), Gaps = 11/462 (2%)

Query: 76  GVLVAAAGLQNLELARSIHGLMVKFGLESD---LFEGLKNPYLVSCNAIVAGFINNKLFQ 132
           GVL     + ++ +A  +  L   FG   D   +F+ +  P       ++  +  NK   
Sbjct: 65  GVLTGNGLMGDISIATKLVSLYGFFGYTKDARLVFDQIPEPDFYLWKVMLRCYCLNKESV 124

Query: 133 QAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVL 192
           + V L++     G   + +     ++ C  L      + IH   +K+    D  V   +L
Sbjct: 125 EVVKLYDLLMKHGFRYDDIVFSKALKACTELQDLDNGKKIHCQLVKVP-SFDNVVLTGLL 183

Query: 193 DMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTV 252
           DMY+   ++ +A ++F ++  ++V+ WT M+  +V  +   + L +F  MR++ ++ +  
Sbjct: 184 DMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNEY 243

Query: 253 ALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQI 312
               LI     L  L +GK  H  +V  G++    L  S++ MY KCGD+ ++R VFN+ 
Sbjct: 244 TYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEH 303

Query: 313 TEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEIC 372
           +   LV WTA+I GY  NG   EAL+ F KM+  +    + +T+ S+L+  G +  LE+ 
Sbjct: 304 SHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKP-NCVTIASVLSGCGLIENLELG 362

Query: 373 LQLHGIAFEAGFPRYRSVQNCLISSYSKC-GNVDLAYIVFEEMGFLRDVVSWNTIIYGYG 431
             +HG++ + G     +V N L+  Y+KC  N D  Y+   EM   +D+V+WN+II G+ 
Sbjct: 363 RSVHGLSIKVGIWD-TNVANALVHMYAKCYQNRDAKYVF--EMESEKDIVAWNSIISGFS 419

Query: 432 VNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQ 491
            NG    AL L+H+M      P+  T  S+ +AC   G    G  +    ++   +  S 
Sbjct: 420 QNGSIHEALFLFHRMNSESVTPNGVTVASLFSACASLGSLAVGSSLHAYSVKLGFLASSS 479

Query: 492 EHYG-CVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSG 532
            H G  ++D  A+ G    A  L    +E      W A++ G
Sbjct: 480 VHVGTALLDFYAKCGDPQSAR-LIFDTIEEKNTITWSAMIGG 520



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 145/294 (49%), Gaps = 3/294 (1%)

Query: 173 HGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYA 232
           HG+    GL+ D+S+   ++ +Y        A  +F ++   D   W  M+  +   + +
Sbjct: 64  HGVLTGNGLMGDISIATKLVSLYGFFGYTKDARLVFDQIPEPDFYLWKVMLRCYCLNKES 123

Query: 233 GDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSI 292
            + +K++  + K     D +     +     L DL  GK++H Q+V       + L+  +
Sbjct: 124 VEVVKLYDLLMKHGFRYDDIVFSKALKACTELQDLDNGKKIHCQLVKVPSFDNVVLT-GL 182

Query: 293 IAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVD 352
           + MY+KCG++ S+  VFN IT +++V WT++I+GYV+N    E L  F +MR+      +
Sbjct: 183 LDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVLG-N 241

Query: 353 SITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFE 412
             T  +++ A  +L+AL      HG   ++G      +   L+  Y KCG++  A  VF 
Sbjct: 242 EYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFN 301

Query: 413 EMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           E   + D+V W  +I GY  NG    AL+L+ KM      P+  T  S+L+ CG
Sbjct: 302 EHSHV-DLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGCG 354



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 114/241 (47%), Gaps = 6/241 (2%)

Query: 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
           +Q H  +   GL  ++ ++  ++++Y   G    +R VF+QI E     W  ++  Y  N
Sbjct: 61  RQSHGVLTGNGLMGDISIATKLVSLYGFFGYTKDARLVFDQIPEPDFYLWKVMLRCYCLN 120

Query: 331 GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV 390
             + E +  +  +  +     D I     L A  EL  L+   ++H    +   P + +V
Sbjct: 121 KESVEVVKLY-DLLMKHGFRYDDIVFSKALKACTELQDLDNGKKIHCQLVKV--PSFDNV 177

Query: 391 Q-NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
               L+  Y+KCG +  A+ VF ++  LR+VV W ++I GY  N   E  L L+++M E 
Sbjct: 178 VLTGLLDMYAKCGEIKSAHKVFNDIT-LRNVVCWTSMIAGYVKNDLCEEGLVLFNRMREN 236

Query: 450 GEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSD 509
             + +  TY +++ AC      + G   F+  + ++ ++ S      ++D+  + G +S+
Sbjct: 237 NVLGNEYTYGTLIMACTKLSALHQG-KWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISN 295

Query: 510 A 510
           A
Sbjct: 296 A 296


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  257 bits (657), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 150/480 (31%), Positives = 259/480 (53%), Gaps = 16/480 (3%)

Query: 57  KAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLV 116
           + +  +++SGL    F M+  + A     ++  A                F  +  P ++
Sbjct: 5   QVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKA-------------FREVSEPDIL 51

Query: 117 SCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLT 176
             NAI+ G+    +    + ++   + S + PN  T L V++ C       + + IHG T
Sbjct: 52  LWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQT 111

Query: 177 IKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDAL 236
            K G   +V V NS++ MY+    +  A  +F ++  + V+SWT ++  +V      +AL
Sbjct: 112 FKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEAL 171

Query: 237 KIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMY 296
            +F+EMR+  +  D +AL+++++    + DL +GK +H  V   GL+ E  +  S+  MY
Sbjct: 172 NVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMY 231

Query: 297 SKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITL 356
           +K G ++ +R  FN++ + +L+ W A+ISGY  NG   EA+  F +M   K   VDSIT+
Sbjct: 232 AKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREM-ITKNIRVDSITM 290

Query: 357 VSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGF 416
            S + AS ++ +LE+   L G   ++ +     V   LI  Y+KCG++ LA  VF+ +  
Sbjct: 291 RSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVAD 350

Query: 417 LRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLV 476
            +DVV W+ +I GYG++GHG+ A+ LY++M + G  P+  T++ +L AC ++GL  +G  
Sbjct: 351 -KDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWE 409

Query: 477 IFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
           +F+ M  ++ ++P  +HY CVVDLL RAG L+ A      +    G ++W ALLS C +H
Sbjct: 410 LFHLM-PDHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIH 468



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 103/440 (23%), Positives = 206/440 (46%), Gaps = 23/440 (5%)

Query: 10  KLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLP 69
           K ++     G +  A   F E+ E +++ W+ +I GY+     +  ++ +  M +S + P
Sbjct: 24  KFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHP 83

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF---------------------- 107
           N FT + VL A  G     + + IHG   K+G  S++F                      
Sbjct: 84  NCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVF 143

Query: 108 EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRA 167
           + L +  +VS  +I++G++ N    +A+ +F   R   + P+ + +++V+     +    
Sbjct: 144 DKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLG 203

Query: 168 LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
             + IHGL  KLGL  +  +  S+  MY+    ++ A   F  ME  ++I W  M+  + 
Sbjct: 204 QGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYA 263

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
           +  Y  +A+K+FREM    I  D++ + + +  +A +G L+  + L   +     + +  
Sbjct: 264 NNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTF 323

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
           ++  +I MY+KCG +  +R VF+++ +K +V W+ +I GY  +G  +EA+  + +M+Q  
Sbjct: 324 VNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAG 383

Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
               D  T + +LTA      ++   +L  +  + G   +    +C++    + G ++ A
Sbjct: 384 VCPNDG-TFIGLLTACKNSGLVKEGWELFHLMPDHGIEPHHQHYSCVVDLLGRAGYLNQA 442

Query: 408 YIVFEEMGFLRDVVSWNTII 427
           Y     M     V  W  ++
Sbjct: 443 YDFIMSMPIKPGVSVWGALL 462



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 162/342 (47%), Gaps = 23/342 (6%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
            + L+S Y K G+I  A  +FD++ ++ VVSW+ +I GY  NG   +++  F  M    +
Sbjct: 123 QNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNV 182

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
            P+   +V V+ A   +++L   +SIHGL+ K GLE +                      
Sbjct: 183 KPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARF 242

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
            F  ++ P L+  NA+++G+ NN   ++A+ LF       +  +++TM + +     +GS
Sbjct: 243 FFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGS 302

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
             L   + G   K     D  VN  ++DMY+    +  A  +F  +  KDV+ W+ M+  
Sbjct: 303 LELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMG 362

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +    +  +A+ ++ EM+++ +  +    + L++     G +K G +L   +   G++  
Sbjct: 363 YGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMPDHGIEPH 422

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVS-WTAIISG 326
            +  + ++ +  + G L+ +      +  K  VS W A++S 
Sbjct: 423 HQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSA 464



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 56/100 (56%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + ++ L+  Y K G I  A  +FD + +K+VV WS++I GY ++G  ++++  ++ M 
Sbjct: 321 DTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMK 380

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE 103
            +G+ PN  T +G+L A      ++    +  LM   G+E
Sbjct: 381 QAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMPDHGIE 420


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  257 bits (657), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 150/480 (31%), Positives = 259/480 (53%), Gaps = 16/480 (3%)

Query: 57  KAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLV 116
           + +  +++SGL    F M+  + A     ++  A                F  +  P ++
Sbjct: 20  QVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKA-------------FREVSEPDIL 66

Query: 117 SCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLT 176
             NAI+ G+    +    + ++   + S + PN  T L V++ C       + + IHG T
Sbjct: 67  LWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQT 126

Query: 177 IKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDAL 236
            K G   +V V NS++ MY+    +  A  +F ++  + V+SWT ++  +V      +AL
Sbjct: 127 FKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEAL 186

Query: 237 KIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMY 296
            +F+EMR+  +  D +AL+++++    + DL +GK +H  V   GL+ E  +  S+  MY
Sbjct: 187 NVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMY 246

Query: 297 SKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITL 356
           +K G ++ +R  FN++ + +L+ W A+ISGY  NG   EA+  F +M   K   VDSIT+
Sbjct: 247 AKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREM-ITKNIRVDSITM 305

Query: 357 VSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGF 416
            S + AS ++ +LE+   L G   ++ +     V   LI  Y+KCG++ LA  VF+ +  
Sbjct: 306 RSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVA- 364

Query: 417 LRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLV 476
            +DVV W+ +I GYG++GHG+ A+ LY++M + G  P+  T++ +L AC ++GL  +G  
Sbjct: 365 DKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWE 424

Query: 477 IFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
           +F+ M  ++ ++P  +HY CVVDLL RAG L+ A      +    G ++W ALLS C +H
Sbjct: 425 LFHLM-PDHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIH 483



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 103/440 (23%), Positives = 206/440 (46%), Gaps = 23/440 (5%)

Query: 10  KLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLP 69
           K ++     G +  A   F E+ E +++ W+ +I GY+     +  ++ +  M +S + P
Sbjct: 39  KFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHP 98

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF---------------------- 107
           N FT + VL A  G     + + IHG   K+G  S++F                      
Sbjct: 99  NCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVF 158

Query: 108 EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRA 167
           + L +  +VS  +I++G++ N    +A+ +F   R   + P+ + +++V+     +    
Sbjct: 159 DKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLG 218

Query: 168 LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
             + IHGL  KLGL  +  +  S+  MY+    ++ A   F  ME  ++I W  M+  + 
Sbjct: 219 QGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYA 278

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
           +  Y  +A+K+FREM    I  D++ + + +  +A +G L+  + L   +     + +  
Sbjct: 279 NNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTF 338

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
           ++  +I MY+KCG +  +R VF+++ +K +V W+ +I GY  +G  +EA+  + +M+Q  
Sbjct: 339 VNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAG 398

Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
               D  T + +LTA      ++   +L  +  + G   +    +C++    + G ++ A
Sbjct: 399 VCPNDG-TFIGLLTACKNSGLVKEGWELFHLMPDHGIEPHHQHYSCVVDLLGRAGYLNQA 457

Query: 408 YIVFEEMGFLRDVVSWNTII 427
           Y     M     V  W  ++
Sbjct: 458 YDFIMSMPIKPGVSVWGALL 477



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 162/342 (47%), Gaps = 23/342 (6%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
            + L+S Y K G+I  A  +FD++ ++ VVSW+ +I GY  NG   +++  F  M    +
Sbjct: 138 QNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNV 197

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
            P+   +V V+ A   +++L   +SIHGL+ K GLE +                      
Sbjct: 198 KPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARF 257

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
            F  ++ P L+  NA+++G+ NN   ++A+ LF       +  +++TM + +     +GS
Sbjct: 258 FFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGS 317

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
             L   + G   K     D  VN  ++DMY+    +  A  +F  +  KDV+ W+ M+  
Sbjct: 318 LELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMG 377

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +    +  +A+ ++ EM+++ +  +    + L++     G +K G +L   +   G++  
Sbjct: 378 YGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMPDHGIEPH 437

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVS-WTAIISG 326
            +  + ++ +  + G L+ +      +  K  VS W A++S 
Sbjct: 438 HQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSA 479



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 99/198 (50%), Gaps = 2/198 (1%)

Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISG 326
           LK   Q++ Q+++ GL     L    I      GD++ +   F +++E  ++ W AII G
Sbjct: 15  LKHLDQVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKG 74

Query: 327 YVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPR 386
           Y Q       +  ++ M+  +    +  T + +L A G  +   I  Q+HG  F+ GF  
Sbjct: 75  YTQKNIVDAPIRMYMDMQISQVHP-NCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGS 133

Query: 387 YRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM 446
              VQN L+S Y+K G +  A IVF+++   R VVSW +II GY  NG    AL ++ +M
Sbjct: 134 NVFVQNSLVSMYAKFGQISYARIVFDKL-HDRTVVSWTSIISGYVQNGDPMEALNVFKEM 192

Query: 447 TETGEVPDSSTYLSILNA 464
            +    PD    +S++ A
Sbjct: 193 RQCNVKPDWIALVSVMTA 210



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 56/100 (56%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + ++ L+  Y K G I  A  +FD + +K+VV WS++I GY ++G  ++++  ++ M 
Sbjct: 336 DTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMK 395

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE 103
            +G+ PN  T +G+L A      ++    +  LM   G+E
Sbjct: 396 QAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMPDHGIE 435


>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1724

 Score =  257 bits (657), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 162/555 (29%), Positives = 288/555 (51%), Gaps = 31/555 (5%)

Query: 8    SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
            ++ L+S +     ++EA  +FD + E +++SW+ +I  Y+ +G   +S++ F  M     
Sbjct: 985  ANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHN 1044

Query: 68   LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL--------------------- 106
              NS T+  +L   + + NL+  R IHGL+VK GL+S++                     
Sbjct: 1045 ETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAEL 1104

Query: 107  -FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
             F+ +    L+S N+++A ++ +      + +       G V N VT  + +  C     
Sbjct: 1105 VFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPEC 1164

Query: 166  RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
                +++H L I  G    + V N+++ MY  L  +  A ++ + M   D ++W  ++G 
Sbjct: 1165 LIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGG 1224

Query: 226  FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDL-KRGKQLHAQVVLGGLQS 284
              + E   +A+K ++ +R+  I  + + +++++   +   DL K G  +HA +VL G +S
Sbjct: 1225 HAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFES 1284

Query: 285  ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
            +  + NS+I MY+KCGDL+SS  +F+ +  KS ++W A+++    +GC  EAL  F +MR
Sbjct: 1285 DDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMR 1344

Query: 345  QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
                + +D  +    L A+  LA LE   QLHG+  + GF     V N  +  Y KCG +
Sbjct: 1345 NVGVN-LDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEM 1403

Query: 405  -DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
             D+  ++ + +   R  +SWN +I  +  +G  + A   +H+M + G  PD  T++S+L+
Sbjct: 1404 HDVLKMLPQPIN--RSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLS 1461

Query: 464  ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
            AC H GL ++GL  ++ M  E  V P  EH  C++DLL R+G LS A G   ++   + P
Sbjct: 1462 ACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEM--PVPP 1519

Query: 524  N--IWRALLSGCVLH 536
            N   WR+LL+ C +H
Sbjct: 1520 NDLAWRSLLAACRIH 1534



 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 155/517 (29%), Positives = 261/517 (50%), Gaps = 23/517 (4%)

Query: 19  GKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVL 78
           G++ EA  L    P +   S  + I    I    +K  K   H++ + L+ N F      
Sbjct: 12  GRLAEALKLLSSNPTRLDPSLYLKILQLCI----DKKAKKQGHLIHTHLITNGFG----- 62

Query: 79  VAAAGLQNLELARSIHGLMVKFG---LESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAV 135
                  +L L   +    VK G      ++F+G+    +VS  A+V+G+  N  F++A 
Sbjct: 63  ------SDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAF 116

Query: 136 LLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMY 195
           +LF+  R  G+  N  T  + +R C +L    +   + G   K   + ++ V ++++D +
Sbjct: 117 VLFSDMRHCGVKANQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFH 176

Query: 196 SCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALL 255
           S    ++ A  +F  M  +DV+SW  M+G +    +A D+  +FR M +  ++ D   L 
Sbjct: 177 SKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLG 236

Query: 256 NLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK 315
           +++  +A  G L    Q+H  +   G  S   ++  +I  Y+K G L S++ +   + +K
Sbjct: 237 SVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKK 296

Query: 316 SLVSWTAIISGYVQNGC-AREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQ 374
            L S TA+I+GY   G  + +AL+ F +M Q     +D + L S+L     LA+  +  Q
Sbjct: 297 DLFSSTALITGYAHEGIYSVDALDLFKEMNQMNI-GMDDVILCSMLNICANLASFALGTQ 355

Query: 375 LHGIAFEAGFPRYR-SVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVN 433
           +H  A +   P Y  ++ N LI  Y+K G ++ A   F+EM   ++V+SW ++I GY  +
Sbjct: 356 IHAFALKYQ-PSYDVAMGNALIDMYAKSGEIEDAKRAFDEME-EKNVISWTSLISGYAKH 413

Query: 434 GHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEH 493
           G+G  A++LY KM   G  P+  T+LS+L AC H GLT +G   FN M+ +  +KP  EH
Sbjct: 414 GYGHMAVSLYKKMESKGFKPNDVTFLSLLFACSHTGLTAEGCECFNNMVNKYNIKPRAEH 473

Query: 494 YGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALL 530
           Y C+VDL AR G L +A  L  K+      ++W A+L
Sbjct: 474 YSCMVDLFARQGLLEEAYNLLCKIDIKHNASLWGAIL 510



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 149/564 (26%), Positives = 264/564 (46%), Gaps = 46/564 (8%)

Query: 6    YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
            + ++ L++ Y K G I+ A  +FDE+  +N  SWS ++ GY   G +E+++  F  M   
Sbjct: 780  FQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGL 839

Query: 66   GLLPNSFTMVGVLVAAAGLQNL--ELARSIHGLMVKFGLESD------------------ 105
            G+ PN F MV  L+ A        +    +HG +VK G+  D                  
Sbjct: 840  GVEPNGF-MVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVY 898

Query: 106  ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                LFE + +  +VS  +++ G+ ++    + + ++   R  G+  N  T  TV   C 
Sbjct: 899  NAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCG 958

Query: 162  ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
             L  + L   + G  I+ G    VSV NS++ M+S    ++ A  +F  M   D+ISW  
Sbjct: 959  LLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNA 1018

Query: 222  MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
            M+  +       ++L+ F  MR      ++  L +L+SV + + +LK G+ +H  VV  G
Sbjct: 1019 MISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLG 1078

Query: 282  LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
            L S + + N+++ +YS+ G  + +  VF  +TE+ L+SW ++++ YVQ+G   + L    
Sbjct: 1079 LDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILA 1138

Query: 342  KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
            ++ Q     ++ +T  S L A      L     +H +   AGF  +  V N L++ Y K 
Sbjct: 1139 ELLQ-MGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKL 1197

Query: 402  GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
            G +  A  V + M    D V+WN +I G+  N     A+  Y  + E G   +  T +S+
Sbjct: 1198 GMMMEAKKVLQTMP-QPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSV 1256

Query: 462  LNACGHA-GLTNDGLVIFNQMI-----EENKVKPSQEHYGCVVDLLARAGCLSDASGLAG 515
            L AC     L   G+ I   ++      ++ VK S      ++ + A+ G L+ ++    
Sbjct: 1257 LGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNS------LITMYAKCGDLNSSN---- 1306

Query: 516  KLLEGMG---PNIWRALLSGCVLH 536
             + +G+G   P  W A+++    H
Sbjct: 1307 YIFDGLGNKSPITWNAMVAANAHH 1330



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 146/613 (23%), Positives = 290/613 (47%), Gaps = 52/613 (8%)

Query: 4    DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
            D Y  + L+  Y   G +  A+ LF+E+P+ NVVSW+ ++ GYS +G   + +  +  M 
Sbjct: 880  DVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMR 939

Query: 64   LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
              G+  N  T   V  +   L++  L   + G ++++G E                    
Sbjct: 940  QEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVE 999

Query: 106  ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                +F+ +    ++S NA+++ + ++ L ++++  F++ R      N+ T+ +++  C 
Sbjct: 1000 EACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCS 1059

Query: 162  ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            ++ +      IHGL +KLGL  +V + N++L +YS     + A  +F+ M  +D+ISW  
Sbjct: 1060 SVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNS 1119

Query: 222  MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
            MM  +V      D LKI  E+ +   + + V   + ++  +    L   K +HA +++ G
Sbjct: 1120 MMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAG 1179

Query: 282  LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
                L + N+++ MY K G +  ++ V   + +   V+W A+I G+ +N    EA+  + 
Sbjct: 1180 FHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAY- 1238

Query: 342  KMRQEKTDSVDSITLVSILTA-SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            K+ +EK    + IT+VS+L A S     L+  + +H      GF     V+N LI+ Y+K
Sbjct: 1239 KLIREKGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAK 1298

Query: 401  CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
            CG+++ +  +F+ +G  +  ++WN ++     +G GE AL ++ +M   G   D  ++  
Sbjct: 1299 CGDLNSSNYIFDGLGN-KSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSG 1357

Query: 461  ILNACGHAGLTNDGLVIFNQMIE---ENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL 517
             L A  +  +  +G  +   +I+   E+ +  +       +D+  + G + D   +  + 
Sbjct: 1358 GLAATANLAVLEEGQQLHGLVIKLGFESDLHVTN----AAMDMYGKCGEMHDVLKMLPQP 1413

Query: 518  LEGMGPNIWRALLSGCVLHVGRFQDA-----EALRSGSQKKGIIKI-------------P 559
            +     + W  L+S    H G FQ A     E L+ G +   +  +              
Sbjct: 1414 INRSRLS-WNILISAFARH-GCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDE 1471

Query: 560  GISFLNSTSRDFG 572
            G+++ +S +R+FG
Sbjct: 1472 GLAYYDSMTREFG 1484



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 140/514 (27%), Positives = 248/514 (48%), Gaps = 37/514 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + ++KL+  Y K G +  A N+FD +PE++VVSW+ ++ GYS NG  EK+   FS M 
Sbjct: 64  DLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMR 123

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLEL----------ARSIHGLMVKFGL----------- 102
             G+  N FT    L A   L+ L++           R +  L VK  L           
Sbjct: 124 HCGVKANQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKME 183

Query: 103 -ESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
             S LF  +    +VS NA++ G+        +  +F      GLVP+  T+ +V+R   
Sbjct: 184 DASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASA 243

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
             G   +   IHG+  +LG      V   +++ Y+    L +A  + + M  KD+ S T 
Sbjct: 244 EGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTA 303

Query: 222 MM-GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
           ++ G   +  Y+ DAL +F+EM +  I  D V L +++++ A L     G Q+HA  +  
Sbjct: 304 LITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICANLASFALGTQIHAFALKY 363

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
               ++ + N++I MY+K G+++ ++  F+++ EK+++SWT++ISGY ++G    A++ +
Sbjct: 364 QPSYDVAMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAVSLY 423

Query: 341 IKMRQEKTDSVDSITLVSILTASGELA-ALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
            KM + K    + +T +S+L A        E C   + +  +          +C++  ++
Sbjct: 424 KKM-ESKGFKPNDVTFLSLLFACSHTGLTAEGCECFNNMVNKYNIKPRAEHYSCMVDLFA 482

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTI-----IYGYGVNGHGETALALYHKMTETGEVPD 454
           + G ++ AY +  ++    +   W  I     IYGY   G  E A  L++   E     +
Sbjct: 483 RQGLLEEAYNLLCKIDIKHNASLWGAILGASSIYGYMSLGK-EAASNLFNMQPE-----N 536

Query: 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVK 488
           S  Y+ + +    AGL +D   I  +++EE   K
Sbjct: 537 SVNYVVLASIYSAAGLWDDAWKI-RKLMEERSTK 569



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 130/523 (24%), Positives = 236/523 (45%), Gaps = 63/523 (12%)

Query: 11   LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
            LL+ Y ++G+ ++AE +F  + E++++SW+ ++  Y  +G     +K  + ++  G + N
Sbjct: 1089 LLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMN 1148

Query: 71   SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--------------------- 109
              T    L A +  + L  ++ +H L++  G    L  G                     
Sbjct: 1149 HVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQ 1208

Query: 110  -LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
             +  P  V+ NA++ G   N+   +AV  +   R  G+  N +TM++V+  C A      
Sbjct: 1209 TMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPDDL-- 1266

Query: 169  CELIHGLTIKLGLIL-----DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
              L HG+ I   ++L     D  V NS++ MY+   DL+++  IF  +  K  I+W  M+
Sbjct: 1267 --LKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMV 1324

Query: 224  GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
                      +ALKIF EMR   +  D  +    ++  A L  L+ G+QLH  V+  G +
Sbjct: 1325 AANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFE 1384

Query: 284  SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC---AREALNQF 340
            S+L ++N+ + MY KCG++     +  Q   +S +SW  +IS + ++GC   ARE  ++ 
Sbjct: 1385 SDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEM 1444

Query: 341  IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN-------- 392
            +K+  +     D +T VS+L+A             HG   + G   Y S+          
Sbjct: 1445 LKLGPKP----DHVTFVSLLSACN-----------HGGLVDEGLAYYDSMTREFGVFPGI 1489

Query: 393  ----CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTE 448
                C+I    + G +  A    +EM    + ++W +++    ++G+ E A      + E
Sbjct: 1490 EHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLE 1549

Query: 449  TGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEEN-KVKPS 490
              +  D S Y+   N C  +G   D   +  +M   N K +P+
Sbjct: 1550 L-DPSDDSAYVLYSNVCATSGKWEDVENLRKEMGSNNIKKQPA 1591



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 154/302 (50%), Gaps = 3/302 (0%)

Query: 157  IRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
            ++G   + S+   + +H   I   + L +   N++++MYS   +++ A  +F EM  ++ 
Sbjct: 751  LKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNE 810

Query: 217  ISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDL-KRGKQLHA 275
             SW+ M+  +V      +A+ +F +M    +  +   + +LI+  +  G +   G Q+H 
Sbjct: 811  ASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHG 870

Query: 276  QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
             VV  G+  ++ +  +++  Y   G + +++ +F ++ + ++VSWT+++ GY  +G   E
Sbjct: 871  FVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGE 930

Query: 336  ALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLI 395
             LN + +MRQE   S +  T  ++ ++ G L    +  Q+ G   + GF    SV N LI
Sbjct: 931  VLNVYQRMRQEGV-SGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLI 989

Query: 396  SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
            S +S   +V+ A  VF+ M    D++SWN +I  Y  +G    +L  +H M       +S
Sbjct: 990  SMFSSFSSVEEACYVFDHMNEC-DIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNS 1048

Query: 456  ST 457
            +T
Sbjct: 1049 TT 1050



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 124/239 (51%), Gaps = 10/239 (4%)

Query: 233 GDALKIFREMRKSR--IICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSN 290
           GD  K+F + + +   I C       L   + I   +  GK LHA  ++G +   +  +N
Sbjct: 725 GDIAKVFLQQQHTDYGIRCLNAVNFPLKGFSEITSQMA-GKALHAFCIVGSVNLGIFQTN 783

Query: 291 SIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDS 350
           ++I MYSK G+++ +R VF+++  ++  SW+ ++SGYV+ G   EA+  F +M     + 
Sbjct: 784 TLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEP 843

Query: 351 VDSITLVSILTA---SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
            +   + S++TA   SG +A  +   Q+HG   + G      V   L+  Y   G V  A
Sbjct: 844 -NGFMVASLITACSRSGYMA--DEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNA 900

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
             +FEEM    +VVSW +++ GY  +G+    L +Y +M + G   + +T+ ++ ++CG
Sbjct: 901 QKLFEEMP-DHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCG 958



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 48/82 (58%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  D    + L+  Y KSG+I++A+  FDE+ EKNV+SW+ +I GY+ +G+   ++  + 
Sbjct: 365 PSYDVAMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAVSLYK 424

Query: 61  HMMLSGLLPNSFTMVGVLVAAA 82
            M   G  PN  T + +L A +
Sbjct: 425 KMESKGFKPNDVTFLSLLFACS 446


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  257 bits (657), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 173/563 (30%), Positives = 295/563 (52%), Gaps = 31/563 (5%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEI-PEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           +D    + L+S Y K G+ ++A ++F  +   ++++SWS ++  ++ N    +++  F  
Sbjct: 99  LDSVTLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVD 158

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG-LESDLFEG--LKNPY---- 114
           M+ +G  PN +       A +  + + +  SI G ++K G L+SD+  G  L + +    
Sbjct: 159 MIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGR 218

Query: 115 --LVSC----------NAIVAGFINNKLFQ-----QAVLLFNFFRGSGLVPNAVTMLTVI 157
             LVS           NA+    +  +L Q     +A+ LF     SG  P+  T+  VI
Sbjct: 219 GDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVI 278

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYS-CLMD--LDAAIQIFREMECK 214
             C  +    L + +H   I+ GL LD  V   +++MY+ C +D  + AA +IF ++   
Sbjct: 279 SACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDH 338

Query: 215 DVISWTRMMGLFVDFE-YAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQL 273
           +V SWT M+  +V    Y  +AL +FR M  + +I +     + +   A L  L+ G+Q+
Sbjct: 339 NVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQV 398

Query: 274 HAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA 333
               V  G  S   ++NS+I+MY++ G +D +R  F+ + EK+L+S+  +I  Y +N  +
Sbjct: 399 FTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNS 458

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC 393
            EAL  F ++ +++     + T  S+L+ +  +  +    Q+H    ++G    +SV N 
Sbjct: 459 EEALELFNEI-EDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNA 517

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           LIS YS+CGN++ A+ VFE+M   R+V+SW +II G+  +G    AL L+HKM E G  P
Sbjct: 518 LISMYSRCGNIESAFQVFEDME-DRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRP 576

Query: 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL 513
           +  TY+++L+AC H GL N+G   F  M  E+ V P  EHY C+VD+L R+G LS+A   
Sbjct: 577 NEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQF 636

Query: 514 AGKLLEGMGPNIWRALLSGCVLH 536
              +       +WR  L  C +H
Sbjct: 637 INSMPYKADALVWRTFLGACRVH 659



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 118/475 (24%), Positives = 236/475 (49%), Gaps = 35/475 (7%)

Query: 19  GKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVL 78
           G +  A  +F+++PE+N V+W+++I      G+  +++  F  M+ SG  P+ FT+ GV+
Sbjct: 219 GDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVI 278

Query: 79  VAAAGLQNLELARSIHGLMVKFGLESD-------------------------LFEGLKNP 113
            A A ++ L L + +H   ++ GL  D                         +F+ + + 
Sbjct: 279 SACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDH 338

Query: 114 YLVSCNAIVAGFINNKLFQQAVLLFNFFRG---SGLVPNAVTMLTVIRGCVALGSRALCE 170
            + S  A++ G++    + +  L  + FRG   + ++PN  T  + ++ C  L +  + E
Sbjct: 339 NVFSWTAMITGYVQKGGYDEEAL--DLFRGMILTHVIPNHFTFSSTLKACANLAALRIGE 396

Query: 171 LIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFE 230
            +    +KLG      V NS++ MY+    +D A + F  +  K++IS+  ++  +    
Sbjct: 397 QVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNL 456

Query: 231 YAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSN 290
            + +AL++F E+    +        +L+S  A +G + +G+Q+HA+V+  GL+    + N
Sbjct: 457 NSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCN 516

Query: 291 SIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDS 350
           ++I+MYS+CG+++S+  VF  + +++++SWT+II+G+ ++G A +AL  F KM +E    
Sbjct: 517 ALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRP 576

Query: 351 VDSITLVSILTASGELAAL-EICLQLHGIAFEAG-FPRYRSVQNCLISSYSKCGNVDLAY 408
            + +T +++L+A   +  + E       +  E G  PR      C++    + G++  A 
Sbjct: 577 -NEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYA-CIVDILGRSGSLSEAI 634

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
                M +  D + W T +    V+G+ E       KM    E  D + Y+ + N
Sbjct: 635 QFINSMPYKADALVWRTFLGACRVHGNLELGKHAA-KMIIEQEPHDPAAYILLSN 688



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 113/405 (27%), Positives = 184/405 (45%), Gaps = 18/405 (4%)

Query: 126 INNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDV 185
           INN    +A+         G  P+  T    ++ C+   S  +  L+H    +  L LD 
Sbjct: 42  INNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDS 101

Query: 186 SVNNSVLDMYSCLMDLDAAIQIFREM-ECKDVISWTRMMGLFVDFEYAGDALKIFREMRK 244
              NS++ +YS     + A  IFR M   +D+ISW+ M+  F +      AL  F +M +
Sbjct: 102 VTLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIE 161

Query: 245 SRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG-LQSELRLSNSIIAMYSKC-GDL 302
           +    +           +    +  G  +   V+  G LQS++ +   +I M+ K  GDL
Sbjct: 162 NGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDL 221

Query: 303 DSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTA 362
            S+  VF ++ E++ V+WT +I+  +Q G A EA++ F+ M     +  D  TL  +++A
Sbjct: 222 VSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEP-DRFTLSGVISA 280

Query: 363 SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC---GNVDLAYIVFEEMGFLRD 419
              +  L +  QLH  A   G    R V  CLI+ Y+KC   G++  A  +F+++    +
Sbjct: 281 CANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQI-LDHN 339

Query: 420 VVSWNTIIYGY-GVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIF 478
           V SW  +I GY    G+ E AL L+  M  T  +P+  T+ S L AC +      G  +F
Sbjct: 340 VFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVF 399

Query: 479 NQMIEENKVKPSQEHYGCV----VDLLARAGCLSDASGLAGKLLE 519
                 + VK       CV    + + AR+G + DA      L E
Sbjct: 400 T-----HAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFE 439



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 131/289 (45%), Gaps = 24/289 (8%)

Query: 270 GKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQI-TEKSLVSWTAIISGYV 328
           G  +H ++    LQ +    NS+I++YSKCG  + + S+F  + + + L+SW+A++S + 
Sbjct: 85  GTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFA 144

Query: 329 QNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYR 388
            N     AL  F+ M  E     +     +   A      + +   + G   + G+ +  
Sbjct: 145 NNNMGFRALLTFVDM-IENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSD 203

Query: 389 SVQNC-LISSYSKCGNVDL--AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHK 445
               C LI  + K G  DL  A+ VFE+M   R+ V+W  +I      G+   A+ L+  
Sbjct: 204 VCVGCGLIDMFVK-GRGDLVSAFKVFEKMP-ERNAVTWTLMITRLMQFGYAGEAIDLFLD 261

Query: 446 MTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCV----VDLL 501
           M  +G  PD  T   +++AC      N  L++  Q +    ++       CV    +++ 
Sbjct: 262 MIFSGYEPDRFTLSGVISACA-----NMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMY 316

Query: 502 ARAGCLSDASGLAGKLL--EGMGPNI--WRALLSGCVLHVGRFQDAEAL 546
           A+  C  D S  A + +  + +  N+  W A+++G V   G   D EAL
Sbjct: 317 AK--CSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGG--YDEEAL 361


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  257 bits (657), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 158/493 (32%), Positives = 256/493 (51%), Gaps = 36/493 (7%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           LF  ++NP    CN ++ G+  ++   +AV L+ F    G+  +  T   V+  C  LG+
Sbjct: 67  LFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGA 126

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
             L    H   +K G   D+ V N+++  Y        A  +F E   +DV++W  M+  
Sbjct: 127 VKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINA 186

Query: 226 FVDFEYAGDALKIFREMRK-SRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            ++   +  A  +  EM K   +  D V +++L+   A LG+L+RGK LH+     GL  
Sbjct: 187 HLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELGLDE 246

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
            LR++N+I+ MY KC D++S++ VFN+I EK ++SWT+++SG  ++G  +EAL  F KM+
Sbjct: 247 NLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQ 306

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
             K + +D ITLV +L+A  +  AL+    +H +  +        ++  L+  Y+KCG++
Sbjct: 307 LNKIE-LDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSI 365

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           DLA  VF  M  +R+V +WN +I G  ++GHGE A++L+ +M     +PD  T++++L A
Sbjct: 366 DLALQVFRRMR-VRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCA 424

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C HAGL ++GL +F  M  + +++P  EHYGCVVDLL RA  + DA      +       
Sbjct: 425 CSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSV 484

Query: 525 IWRALLSGC--------VLHVGR-------------------------FQDAEALRSGSQ 551
           +W  LL  C           +GR                         +  A  LR   +
Sbjct: 485 LWATLLGACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMK 544

Query: 552 KKGIIKIPGISFL 564
            KGI K PG S++
Sbjct: 545 NKGIEKTPGCSWI 557



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 128/480 (26%), Positives = 234/480 (48%), Gaps = 33/480 (6%)

Query: 4   DPYNSSKLLS--NYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           +P  SSKL+S      SG +  A  LF ++   +    + +I GY+ +    +++  +  
Sbjct: 42  NPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYF 101

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY----- 114
           M+  G+  +++T   VL A A L  ++L R  H  ++K G  SDLF    L   Y     
Sbjct: 102 MVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGS 161

Query: 115 ---------------LVSCNAIVAGFINNKLFQQAV-LLFNFFRGSGLVPNAVTMLTVIR 158
                          +V+ N ++   +N  L ++A  LL    +   L P+ VTM++++ 
Sbjct: 162 FGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVP 221

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C  LG+    + +H  + +LGL  ++ VNN++LDMY    D+++A ++F  +  KDV+S
Sbjct: 222 ACAQLGNLERGKFLHSYSKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLS 281

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           WT M+       Y  +AL +F++M+ ++I  D + L+ ++S  A  G L +GK +H  + 
Sbjct: 282 WTSMLSGLAKSGYFQEALALFQKMQLNKIELDEITLVGVLSACAQTGALDQGKYIHLLID 341

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
              +  +L L  +++ MY+KCG +D +  VF ++  +++ +W A+I G   +G   +A++
Sbjct: 342 KFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAIS 401

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGF---PRYRSVQNCLI 395
            F +M  +K    D +T +++L A      ++  L +   A +  F   PR      C++
Sbjct: 402 LFDQMEHDKL-MPDDVTFIALLCACSHAGLVDEGLAMFQ-AMKNKFQIEPRMEHY-GCVV 458

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
               +   VD A    E M    + V W T++      GH + A  +  ++ E    PDS
Sbjct: 459 DLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIELE--PDS 516


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  257 bits (657), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 143/435 (32%), Positives = 245/435 (56%), Gaps = 13/435 (2%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F  + NP   +CN+I+ G+ N  L +QA+L +      GL P+  T  ++ + C     
Sbjct: 96  VFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSC----- 150

Query: 166 RALCE--LIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
             LCE   +H  + KLG   D  + N++++MYS    L +A ++F +M  K V+SW  M+
Sbjct: 151 GVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMI 210

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
           G +  ++   +A+K+FR M  + +  + + L+N+++  A   DL+  KQ+H  +   G+ 
Sbjct: 211 GAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIG 270

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
               L+++++ +Y KCG    +R +FN++ EK+L  W  +I+G+V++    EAL+ F +M
Sbjct: 271 FHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEM 330

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
           +       D +T+ S+L A   L ALE+   LH    +       ++   L+  Y+KCG+
Sbjct: 331 QLSGVKG-DKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGS 389

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           ++ A  VF+EM   +DV++W  +I G  + G G  AL L+H+M  +   PD+ T++ +L 
Sbjct: 390 IESAMRVFQEMP-EKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLA 448

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
           AC HAGL N+G+  FN M  +  ++PS EHYGC+VD+L RAG +++A  L   +   M P
Sbjct: 449 ACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNM--PMAP 506

Query: 524 N--IWRALLSGCVLH 536
           +  +   LLS C +H
Sbjct: 507 DYFVLVGLLSACRIH 521



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 104/447 (23%), Positives = 200/447 (44%), Gaps = 39/447 (8%)

Query: 3   IDPYNSSKLLS--NYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           +DP+++SK+++      SG +  A  +F++IP     + + +I GY+      +++  + 
Sbjct: 70  VDPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQ 129

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--------------- 105
            MML GL P+ FT   +  +   L      + +H    K G  SD               
Sbjct: 130 LMMLQGLDPDRFTFPSLFKSCGVLCE---GKQLHCHSTKLGFASDAYIQNTLMNMYSNCG 186

Query: 106 -------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                  +F+ + N  +VS   ++  +    L  +A+ LF     + + PN +T++ V+ 
Sbjct: 187 CLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLT 246

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C         + +H    + G+     + ++++D+Y        A  +F +M  K++  
Sbjct: 247 ACARSRDLETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFC 306

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           W  M+   V+     +AL +F EM+ S +  D V + +L+     LG L+ GK LH  + 
Sbjct: 307 WNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIE 366

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
              ++ ++ L  +++ MY+KCG ++S+  VF ++ EK +++WTA+I G    G   +AL 
Sbjct: 367 KEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALE 426

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ------N 392
            F +M+  +    D+IT V +L A      +       GIA+    P    +Q       
Sbjct: 427 LFHEMQMSEVKP-DAITFVGVLAACSHAGLVN-----EGIAYFNSMPNKYGIQPSIEHYG 480

Query: 393 CLISSYSKCGNVDLAYIVFEEMGFLRD 419
           C++    + G +  A  + + M    D
Sbjct: 481 CMVDMLGRAGRIAEAEDLIQNMPMAPD 507


>gi|302816964|ref|XP_002990159.1| hypothetical protein SELMODRAFT_131170 [Selaginella moellendorffii]
 gi|300142014|gb|EFJ08719.1| hypothetical protein SELMODRAFT_131170 [Selaginella moellendorffii]
          Length = 849

 Score =  257 bits (657), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 170/555 (30%), Positives = 271/555 (48%), Gaps = 35/555 (6%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           ++  Y K G +K+A  +F  I   NV SW+I++  Y+ NG H+  ++    M L G+ PN
Sbjct: 122 VVEAYGKCGCVKDARLVFSSIRHPNVYSWTILLAAYAQNGHHKTVLELLRQMDLLGVWPN 181

Query: 71  SFTMVGVLVAAAGLQNLELARSIHG-----------------LMVKFGLESDLFEG---- 109
           + T+  V+ A + L N + AR IH                  L+  +    D+F      
Sbjct: 182 AVTLATVIGAVSELGNWDEARKIHARAAATCQLTYDVVLVTALIDMYAKCGDIFHAEVVF 241

Query: 110 --LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRA 167
              +N  L  CNA+++ +I       AV  FN  + SGL PN VT   + R C   G  +
Sbjct: 242 DQARNKDLACCNAMISAYIQLGYTVDAVSTFNRIQPSGLQPNQVTYALLFRACATNGVYS 301

Query: 168 LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
              + H   I   L  DV VN +++ MYS    L+ A ++F  M  K+V++W  M+  + 
Sbjct: 302 DARVAHMCFILSKLRPDVVVNTALVSMYSRCGSLEDARRVFDRMPGKNVVTWNVMIAGYA 361

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
              Y  +AL+++  M  + +  D +  +N++   ++   L  G+ +H  VV  G  S L 
Sbjct: 362 QEGYTDEALQLYVSMEAAGVEPDEITFVNVLESCSLAEHLAAGRDIHKHVVDAGYDSSLT 421

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQ--ITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           + +++I MYS CG L  +  VF++   T  S++SWTA+++   +NG  R AL  F KM  
Sbjct: 422 VLSALITMYSACGSLGDAVDVFHKGVTTHSSVISWTAMLTALTRNGEGRSALALFRKMDL 481

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFE----AGFPRYRSVQNCLISSYSKC 401
           E   + + +T VS + A   + AL   ++ H I FE     G      +   LI+ Y KC
Sbjct: 482 EGVRA-NVVTFVSTIDACSSIGAL---VEGHAI-FERVIVTGHLIDVVLGTSLINLYGKC 536

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G +D A  VF  + F +++V+WNTI+     NG    +  L  +M   G  P+  T L++
Sbjct: 537 GRLDYALEVFHYLSF-KNIVTWNTILAASSQNGEETLSDELLQEMDLDGAQPNEMTLLNM 595

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L  C H GL    +  F  M+  + + P+ EHYGC+VDLL R+G L +           +
Sbjct: 596 LFGCSHNGLVAKAVSYFRSMVYGHCLVPTSEHYGCLVDLLGRSGQLEEVEAFISSKPFSL 655

Query: 522 GPNIWRALLSGCVLH 536
              +W +LL  CV+H
Sbjct: 656 DSVLWMSLLGSCVIH 670



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 154/347 (44%), Gaps = 24/347 (6%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + L+  Y K G I  AE +FD+   K++   + +I  Y   G+   ++  F+ +  SGL 
Sbjct: 222 TALIDMYAKCGDIFHAEVVFDQARNKDLACCNAMISAYIQLGYTVDAVSTFNRIQPSGLQ 281

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------L 106
           PN  T   +  A A       AR  H   +   L  D                      +
Sbjct: 282 PNQVTYALLFRACATNGVYSDARVAHMCFILSKLRPDVVVNTALVSMYSRCGSLEDARRV 341

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           F+ +    +V+ N ++AG+       +A+ L+     +G+ P+ +T + V+  C      
Sbjct: 342 FDRMPGKNVVTWNVMIAGYAQEGYTDEALQLYVSMEAAGVEPDEITFVNVLESCSLAEHL 401

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFRE--MECKDVISWTRMMG 224
           A    IH   +  G    ++V ++++ MYS    L  A+ +F +       VISWT M+ 
Sbjct: 402 AAGRDIHKHVVDAGYDSSLTVLSALITMYSACGSLGDAVDVFHKGVTTHSSVISWTAMLT 461

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
                     AL +FR+M    +  + V  ++ I   + +G L  G  +  +V++ G   
Sbjct: 462 ALTRNGEGRSALALFRKMDLEGVRANVVTFVSTIDACSSIGALVEGHAIFERVIVTGHLI 521

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNG 331
           ++ L  S+I +Y KCG LD +  VF+ ++ K++V+W  I++   QNG
Sbjct: 522 DVVLGTSLINLYGKCGRLDYALEVFHYLSFKNIVTWNTILAASSQNG 568



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 146/304 (48%), Gaps = 19/304 (6%)

Query: 189 NSVLDMYS---CLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKS 245
           N V++ Y    C+ D   A  +F  +   +V SWT ++  +    +    L++ R+M   
Sbjct: 120 NCVVEAYGKCGCVKD---ARLVFSSIRHPNVYSWTILLAAYAQNGHHKTVLELLRQMDLL 176

Query: 246 RIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG-GLQSELRLSNSIIAMYSKCGDLDS 304
            +  + V L  +I   + LG+    +++HA+      L  ++ L  ++I MY+KCGD+  
Sbjct: 177 GVWPNAVTLATVIGAVSELGNWDEARKIHARAAATCQLTYDVVLVTALIDMYAKCGDIFH 236

Query: 305 SRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE--KTDSVDSITLVSILTA 362
           +  VF+Q   K L    A+IS Y+Q G   +A++ F +++    + + V    L      
Sbjct: 237 AEVVFDQARNKDLACCNAMISAYIQLGYTVDAVSTFNRIQPSGLQPNQVTYALLFRACAT 296

Query: 363 SG---ELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRD 419
           +G   +     +C  L  +  +        V   L+S YS+CG+++ A  VF+ M   ++
Sbjct: 297 NGVYSDARVAHMCFILSKLRPDV------VVNTALVSMYSRCGSLEDARRVFDRMPG-KN 349

Query: 420 VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFN 479
           VV+WN +I GY   G+ + AL LY  M   G  PD  T++++L +C  A     G  I  
Sbjct: 350 VVTWNVMIAGYAQEGYTDEALQLYVSMEAAGVEPDEITFVNVLESCSLAEHLAAGRDIHK 409

Query: 480 QMIE 483
            +++
Sbjct: 410 HVVD 413



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 120/241 (49%), Gaps = 24/241 (9%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ L+S Y + G +++A  +FD +P KNVV+W+++I GY+  G+ +++++ +  M  +G+
Sbjct: 322 NTALVSMYSRCGSLEDARRVFDRMPGKNVVTWNVMIAGYAQEGYTDEALQLYVSMEAAGV 381

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES----------------------D 105
            P+  T V VL + +  ++L   R IH  +V  G +S                      D
Sbjct: 382 EPDEITFVNVLESCSLAEHLAAGRDIHKHVVDAGYDSSLTVLSALITMYSACGSLGDAVD 441

Query: 106 LFEG--LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
           +F      +  ++S  A++     N   + A+ LF      G+  N VT ++ I  C ++
Sbjct: 442 VFHKGVTTHSSVISWTAMLTALTRNGEGRSALALFRKMDLEGVRANVVTFVSTIDACSSI 501

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
           G+      I    I  G ++DV +  S++++Y     LD A+++F  +  K++++W  ++
Sbjct: 502 GALVEGHAIFERVIVTGHLIDVVLGTSLINLYGKCGRLDYALEVFHYLSFKNIVTWNTIL 561

Query: 224 G 224
            
Sbjct: 562 A 562



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 120/248 (48%), Gaps = 9/248 (3%)

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
           L N ++  Y KCG +  +R VF+ I   ++ SWT +++ Y QNG  +  L     +RQ  
Sbjct: 118 LLNCVVEAYGKCGCVKDARLVFSSIRHPNVYSWTILLAAYAQNGHHKTVLEL---LRQMD 174

Query: 348 TDSV--DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV-QNCLISSYSKCGNV 404
              V  +++TL +++ A  EL   +   ++H  A       Y  V    LI  Y+KCG++
Sbjct: 175 LLGVWPNAVTLATVIGAVSELGNWDEARKIHARAAATCQLTYDVVLVTALIDMYAKCGDI 234

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
             A +VF++    +D+   N +I  Y   G+   A++ ++++  +G  P+  TY  +  A
Sbjct: 235 FHAEVVFDQ-ARNKDLACCNAMISAYIQLGYTVDAVSTFNRIQPSGLQPNQVTYALLFRA 293

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C   G+ +D  V     I  +K++P       +V + +R G L DA  +  + + G    
Sbjct: 294 CATNGVYSDARVAHMCFI-LSKLRPDVVVNTALVSMYSRCGSLEDARRVFDR-MPGKNVV 351

Query: 525 IWRALLSG 532
            W  +++G
Sbjct: 352 TWNVMIAG 359



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 68/129 (52%), Gaps = 3/129 (2%)

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
           ++ + +K+  VD    VS+L  SG++ AL+  +Q H I+    F   R + NC++ +Y K
Sbjct: 71  LEEQNQKSGFVDPAAYVSLLKQSGDVTALKT-IQAH-ISHSKRFAGDRLLLNCVVEAYGK 128

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CG V  A +VF  +    +V SW  ++  Y  NGH +T L L  +M   G  P++ T  +
Sbjct: 129 CGCVKDARLVFSSIRH-PNVYSWTILLAAYAQNGHHKTVLELLRQMDLLGVWPNAVTLAT 187

Query: 461 ILNACGHAG 469
           ++ A    G
Sbjct: 188 VIGAVSELG 196



 Score = 40.8 bits (94), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 39/76 (51%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           ID    + L++ Y K G++  A  +F  +  KN+V+W+ ++   S NG    S +    M
Sbjct: 521 IDVVLGTSLINLYGKCGRLDYALEVFHYLSFKNIVTWNTILAASSQNGEETLSDELLQEM 580

Query: 63  MLSGLLPNSFTMVGVL 78
            L G  PN  T++ +L
Sbjct: 581 DLDGAQPNEMTLLNML 596


>gi|15233482|ref|NP_192346.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75214457|sp|Q9XE98.1|PP303_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g04370
 gi|4982476|gb|AAD36944.1|AF069441_4 hypothetical protein [Arabidopsis thaliana]
 gi|7267194|emb|CAB77905.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656985|gb|AEE82385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 729

 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 160/529 (30%), Positives = 268/529 (50%), Gaps = 26/529 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y SS L++ Y K G +  A  +F+E+ E++VV W+ +I  YS  G   ++    + M 
Sbjct: 80  DFYISSSLVNLYAKFGLLAHARKVFEEMRERDVVHWTAMIGCYSRAGIVGEACSLVNEMR 139

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE-------------------- 103
             G+ P   T++ +L   +G+  +   + +H   V +G +                    
Sbjct: 140 FQGIKPGPVTLLEML---SGVLEITQLQCLHDFAVIYGFDCDIAVMNSMLNLYCKCDHVG 196

Query: 104 --SDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
              DLF+ ++   +VS N +++G+ +     + + L    RG GL P+  T    +    
Sbjct: 197 DAKDLFDQMEQRDMVSWNTMISGYASVGNMSEILKLLYRMRGDGLRPDQQTFGASLSVSG 256

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            +    +  ++H   +K G  +D+ +  +++ MY      +A+ ++   +  KDV+ WT 
Sbjct: 257 TMCDLEMGRMLHCQIVKTGFDVDMHLKTALITMYLKCGKEEASYRVLETIPNKDVVCWTV 316

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+   +    A  AL +F EM +S     + A+ ++++  A LG    G  +H  V+  G
Sbjct: 317 MISGLMRLGRAEKALIVFSEMLQSGSDLSSEAIASVVASCAQLGSFDLGASVHGYVLRHG 376

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
              +    NS+I MY+KCG LD S  +F ++ E+ LVSW AIISGY QN    +AL  F 
Sbjct: 377 YTLDTPALNSLITMYAKCGHLDKSLVIFERMNERDLVSWNAIISGYAQNVDLCKALLLFE 436

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +M+ +    VDS T+VS+L A     AL +   +H I   +       V   L+  YSKC
Sbjct: 437 EMKFKTVQQVDSFTVVSLLQACSSAGALPVGKLIHCIVIRSFIRPCSLVDTALVDMYSKC 496

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G ++ A   F+ + + +DVVSW  +I GYG +G G+ AL +Y +   +G  P+   +L++
Sbjct: 497 GYLEAAQRCFDSISW-KDVVSWGILIAGYGFHGKGDIALEIYSEFLHSGMEPNHVIFLAV 555

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
           L++C H G+   GL IF+ M+ +  V+P+ EH  CVVDLL RA  + DA
Sbjct: 556 LSSCSHNGMVQQGLKIFSSMVRDFGVEPNHEHLACVVDLLCRAKRIEDA 604



 Score =  214 bits (546), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 168/587 (28%), Positives = 271/587 (46%), Gaps = 81/587 (13%)

Query: 43  IHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIH-------- 94
           I+  S +G H++ +  FS M+ + LLP++FT   +L A A LQ L    SIH        
Sbjct: 18  INHLSSHGDHKQVLSTFSSMLANKLLPDTFTFPSLLKACASLQRLSFGLSIHQQVLVNGF 77

Query: 95  -----------GLMVKFGL---ESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNF 140
                       L  KFGL      +FE ++   +V   A++  +    +  +A  L N 
Sbjct: 78  SSDFYISSSLVNLYAKFGLLAHARKVFEEMRERDVVHWTAMIGCYSRAGIVGEACSLVNE 137

Query: 141 FRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMD 200
            R  G+ P  VT+L ++ G + +      + +H   +  G   D++V NS+L++Y     
Sbjct: 138 MRFQGIKPGPVTLLEMLSGVLEITQ---LQCLHDFAVIYGFDCDIAVMNSMLNLYCKCDH 194

Query: 201 LDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISV 260
           +  A  +F +ME +D++SW  M+  +       + LK+   MR   +  D       +SV
Sbjct: 195 VGDAKDLFDQMEQRDMVSWNTMISGYASVGNMSEILKLLYRMRGDGLRPDQQTFGASLSV 254

Query: 261 NAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSW 320
           +  + DL+ G+ LH Q+V  G   ++ L  ++I MY KCG  ++S  V   I  K +V W
Sbjct: 255 SGTMCDLEMGRMLHCQIVKTGFDVDMHLKTALITMYLKCGKEEASYRVLETIPNKDVVCW 314

Query: 321 TAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAF 380
           T +ISG ++ G A +AL  F +M Q  +D + S  + S++ +  +L + ++   +HG   
Sbjct: 315 TVMISGLMRLGRAEKALIVFSEMLQSGSD-LSSEAIASVVASCAQLGSFDLGASVHGYVL 373

Query: 381 EAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETAL 440
             G+       N LI+ Y+KCG++D + ++FE M   RD+VSWN II GY  N     AL
Sbjct: 374 RHGYTLDTPALNSLITMYAKCGHLDKSLVIFERMN-ERDLVSWNAIISGYAQNVDLCKAL 432

Query: 441 ALYHKMT-ETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVD 499
            L+ +M  +T +  DS T +S+L AC  AG    G +I + ++  + ++P       +VD
Sbjct: 433 LLFEEMKFKTVQQVDSFTVVSLLQACSSAGALPVGKLI-HCIVIRSFIRPCSLVDTALVD 491

Query: 500 LLARAGCLSDAS---------------------GLAGK-----------LLEGMGPN--I 525
           + ++ G L  A                      G  GK           L  GM PN  I
Sbjct: 492 MYSKCGYLEAAQRCFDSISWKDVVSWGILIAGYGFHGKGDIALEIYSEFLHSGMEPNHVI 551

Query: 526 WRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFLNSTSRDFG 572
           + A+LS C  H G  Q                  G+   +S  RDFG
Sbjct: 552 FLAVLSSCS-HNGMVQQ-----------------GLKIFSSMVRDFG 580



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 156/300 (52%), Gaps = 25/300 (8%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  + L++ Y K GK + +  + + IP K+VV W+++I G    G  EK++  FS M
Sbjct: 278 VDMHLKTALITMYLKCGKEEASYRVLETIPNKDVVCWTVMISGLMRLGRAEKALIVFSEM 337

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
           + SG   +S  +  V+ + A L + +L  S+HG +++ G   D                 
Sbjct: 338 LQSGSDLSSEAIASVVASCAQLGSFDLGASVHGYVLRHGYTLDTPALNSLITMYAKCGHL 397

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVP-NAVTMLTVIRG 159
                +FE +    LVS NAI++G+  N    +A+LLF   +   +   ++ T++++++ 
Sbjct: 398 DKSLVIFERMNERDLVSWNAIISGYAQNVDLCKALLLFEEMKFKTVQQVDSFTVVSLLQA 457

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C + G+  + +LIH + I+  +     V+ +++DMYS    L+AA + F  +  KDV+SW
Sbjct: 458 CSSAGALPVGKLIHCIVIRSFIRPCSLVDTALVDMYSKCGYLEAAQRCFDSISWKDVVSW 517

Query: 220 TRMMGLFVDFEYAGD-ALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
             ++  +  F   GD AL+I+ E   S +  + V  L ++S  +  G +++G ++ + +V
Sbjct: 518 GILIAGY-GFHGKGDIALEIYSEFLHSGMEPNHVIFLAVLSSCSHNGMVQQGLKIFSSMV 576


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 185/673 (27%), Positives = 312/673 (46%), Gaps = 121/673 (17%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           ++++Y   G  K+A ++ + +     V W++++  +   G  ++++     M+ +G  P+
Sbjct: 89  VVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAGTKPD 148

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF----------------------- 107
            FT+   L A   L +    R++HGL+   G ES++F                       
Sbjct: 149 HFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLVFD 208

Query: 108 ----EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFF------RGSGLVPNAVTMLTVI 157
               +G+ +  ++S N+IVA  +     + A+ LF+        + +    + ++++ ++
Sbjct: 209 EITRKGIDD--VISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNIL 266

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
             C +L +    + IH   I+ G   D  V N+++D Y+    ++ A+++F  ME KDV+
Sbjct: 267 PACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVV 326

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICD--------------------------- 250
           SW  M+  +      G A ++F  MRK  I  D                           
Sbjct: 327 SWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQM 386

Query: 251 --------TVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS------------ELRLSN 290
                   +V +++L+S  A LG L +G ++HA  +   L S            +L + N
Sbjct: 387 ILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYN 446

Query: 291 SIIAMYSKCGDLDSSRSVFNQIT--EKSLVSWTAIISGYVQNGCAREALNQFIKM-RQEK 347
           ++I MYSKC    ++RS+F+ I   E+++V+WT +I GY Q G + +AL  F +M  +  
Sbjct: 447 ALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPY 506

Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIA--FEAGFPRYRSVQNCLISSYSKCGNVD 405
             + ++ T+  IL A   LAAL +  Q+H          P    V NCLI  YSKCG+VD
Sbjct: 507 AVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVD 566

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            A  VF+ M   R+ VSW +++ GYG++G G+ AL ++ KM + G VPD  ++L +L AC
Sbjct: 567 TARNVFDSMP-KRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYAC 625

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI 525
            H+G+ + GL  F+ M  +  V  S EHY CV+DLLAR G L  A     ++       I
Sbjct: 626 SHSGMVDQGLNYFDIMRRDYDVVASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPSAVI 685

Query: 526 WRALLSGCVLH---------------------------------VGRFQDAEALRSGSQK 552
           W ALLS C +H                                   R++D   +R   +K
Sbjct: 686 WVALLSACRVHSNVELAEYALNKLVNMKAENDGSYTLISNIYANARRWKDVARIRQLMKK 745

Query: 553 KGIIKIPGISFLN 565
            GI K PG S++ 
Sbjct: 746 SGIKKRPGCSWVQ 758



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 127/282 (45%), Gaps = 16/282 (5%)

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
           S   L   ++A Y  CG    + SV  ++T    V W  ++  +++ G    A+    +M
Sbjct: 81  SPKSLGTGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRM 140

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
            +  T   D  TL   L A GEL +      LHG+    GF     V N L++ YS+CG+
Sbjct: 141 LRAGTKP-DHFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGS 199

Query: 404 VDLAYIVFEEMGF--LRDVVSWNTIIYGYGVNGHGETALALYHKMT------ETGEVPDS 455
           ++ A +VF+E+    + DV+SWN+I+  +    +  TAL L+ +M+       T E  D 
Sbjct: 200 LEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDI 259

Query: 456 STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGC--VVDLLARAGCLSDASGL 513
            + ++IL AC           I +  I         + + C  ++D  A+ G ++DA  +
Sbjct: 260 ISIVNILPACASLKALPQIKEIHSYAIRNGTF---ADAFVCNALIDTYAKCGSMNDAVKV 316

Query: 514 AGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGI 555
              ++E      W A+++G     G F  A  L    +K+ I
Sbjct: 317 FN-VMEFKDVVSWNAMVTG-YTQSGNFGAAFELFENMRKENI 356



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 112/241 (46%), Gaps = 43/241 (17%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIP--EKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           YN+  L+  Y K    K A ++FD IP  E+NVV+W+++I GY+  G    ++K FS M+
Sbjct: 445 YNA--LIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMI 502

Query: 64  LS--GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKF--------------------- 100
                + PN++T+  +L+A A L  L + + IH  + +                      
Sbjct: 503 SKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKC 562

Query: 101 ---GLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
                  ++F+ +     VS  ++++G+  +   ++A+ +F+  + +G VP+ ++ L ++
Sbjct: 563 GDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLL 622

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMD-------LDAAIQIFRE 210
             C   G      +  GL     +  D  V  S  + Y+C++D       LD A +  +E
Sbjct: 623 YACSHSGM-----VDQGLNYFDIMRRDYDVVASA-EHYACVIDLLARCGRLDKAWKTIQE 676

Query: 211 M 211
           M
Sbjct: 677 M 677


>gi|255562697|ref|XP_002522354.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538432|gb|EEF40038.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 704

 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 173/572 (30%), Positives = 284/572 (49%), Gaps = 32/572 (5%)

Query: 5   PYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEK-SMKAFSHMM 63
           PY ++ L++ Y   G   +A+ LFD +P KN +S++ +I  Y  +  +E  S K FS M 
Sbjct: 43  PYLNNNLIAMYAHCGSRSDAQKLFDRMPRKNAISYNALIAAYCRDSSYETLSFKLFSDMG 102

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------- 106
           +  L PN  T   +L     L++  L  ++HG +++FG  +D+                 
Sbjct: 103 IQRLRPNGATFTSLLQVCCLLEDWFLGSTLHGQVLQFGYVNDICVQTMLLGMYSDCGDLE 162

Query: 107 -----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                F        V  N++++G++ N   ++++ LF     SG +    T    +  C 
Sbjct: 163 SACKVFGYAVEKDDVFWNSMISGYLKNDRIKESLSLFGEMVRSGTIFTQFTCSMALNACS 222

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            LG  +   +IH   I   ++ D ++ N++LDMY    D   A+ +F  ++   +ISW  
Sbjct: 223 KLGYYSQGRIIHAQVIVSNILPDSALQNALLDMYYSCGDRRTALTLFSRIQIPSLISWNS 282

Query: 222 MMGLFVDFEYAGDALKIF-REMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
           M+  F   E    A+ +F + +  S    D      +IS          G+ LHAQV+  
Sbjct: 283 MISWFAKNEEGEKAMGLFVKLLGMSTCKPDEYTFTAIISATGEFRATDYGQPLHAQVIKA 342

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           GLQ  + + N++++MY +  D++++R VF+ + EK +V WT +I G+ + G    A+  F
Sbjct: 343 GLQWSVFIGNALLSMYFRNSDVEAARGVFSLMEEKDVVLWTEMIMGHCRLGDGESAIKLF 402

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            KMRQE   S DS  L   L+   +LA L+    LH  A + G     SV   L+  Y+K
Sbjct: 403 CKMRQEGHKS-DSFALSGALSVCADLAILKQGQMLHTQAVKTGCEAEISVCGSLVDMYAK 461

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
            GN+  A ++F ++    D+  WN++I GY  +G  E A+ L+ ++ E G  PD  T+LS
Sbjct: 462 NGNLQAAQLIFSQVCN-PDLKCWNSMIGGYSHHGMAEEAVMLFAEVLECGLTPDQVTFLS 520

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK-LLE 519
           +L+AC H+GL   G  +++ M ++N + P  +HY C+V LL+RAG L +A  L  +    
Sbjct: 521 LLSACNHSGLVEKGKFLWDYM-KKNGITPGPKHYSCMVSLLSRAGLLDEAEELITESTCS 579

Query: 520 GMGPNIWRALLSGCV----LHVGRFQDAEALR 547
                +WR LLS CV    L VG     + LR
Sbjct: 580 EEHLKLWRTLLSSCVNRRNLTVGARAAKQVLR 611



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 133/477 (27%), Positives = 221/477 (46%), Gaps = 26/477 (5%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           LL  Y   G ++ A  +F    EK+ V W+ +I GY  N   ++S+  F  M+ SG +  
Sbjct: 151 LLGMYSDCGDLESACKVFGYAVEKDDVFWNSMISGYLKNDRIKESLSLFGEMVRSGTIFT 210

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFE 108
            FT    L A + L      R IH  ++   +  D                      LF 
Sbjct: 211 QFTCSMALNACSKLGYYSQGRIIHAQVIVSNILPDSALQNALLDMYYSCGDRRTALTLFS 270

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRG-SGLVPNAVTMLTVIRGCVALGSRA 167
            ++ P L+S N++++ F  N+  ++A+ LF    G S   P+  T   +I       +  
Sbjct: 271 RIQIPSLISWNSMISWFAKNEEGEKAMGLFVKLLGMSTCKPDEYTFTAIISATGEFRATD 330

Query: 168 LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
             + +H   IK GL   V + N++L MY    D++AA  +F  ME KDV+ WT M+    
Sbjct: 331 YGQPLHAQVIKAGLQWSVFIGNALLSMYFRNSDVEAARGVFSLMEEKDVVLWTEMIMGHC 390

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
                  A+K+F +MR+     D+ AL   +SV A L  LK+G+ LH Q V  G ++E+ 
Sbjct: 391 RLGDGESAIKLFCKMRQEGHKSDSFALSGALSVCADLAILKQGQMLHTQAVKTGCEAEIS 450

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
           +  S++ MY+K G+L +++ +F+Q+    L  W ++I GY  +G A EA+  F ++  E 
Sbjct: 451 VCGSLVDMYAKNGNLQAAQLIFSQVCNPDLKCWNSMIGGYSHHGMAEEAVMLFAEVL-EC 509

Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
             + D +T +S+L+A      +E    L     + G        +C++S  S+ G +D A
Sbjct: 510 GLTPDQVTFLSLLSACNHSGLVEKGKFLWDYMKKNGITPGPKHYSCMVSLLSRAGLLDEA 569

Query: 408 -YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
             ++ E       +  W T++    VN    T  A   K     +  DS+TY+ + N
Sbjct: 570 EELITESTCSEEHLKLWRTLL-SSCVNRRNLTVGARAAKQVLRLDPEDSATYILLSN 625



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 158/334 (47%), Gaps = 8/334 (2%)

Query: 156 VIRGCVALGS----RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM 211
           +I+ C  + S    R L  LI   T          +NN+++ MY+       A ++F  M
Sbjct: 10  LIKKCTTINSLKKARQLHALILATTASTSYAQSPYLNNNLIAMYAHCGSRSDAQKLFDRM 69

Query: 212 ECKDVISWTRMMGLFV-DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG 270
             K+ IS+  ++  +  D  Y   + K+F +M   R+  +     +L+ V  +L D   G
Sbjct: 70  PRKNAISYNALIAAYCRDSSYETLSFKLFSDMGIQRLRPNGATFTSLLQVCCLLEDWFLG 129

Query: 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
             LH QV+  G  +++ +   ++ MYS CGDL+S+  VF    EK  V W ++ISGY++N
Sbjct: 130 STLHGQVLQFGYVNDICVQTMLLGMYSDCGDLESACKVFGYAVEKDDVFWNSMISGYLKN 189

Query: 331 GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV 390
              +E+L+ F +M +  T      T    L A  +L        +H     +      ++
Sbjct: 190 DRIKESLSLFGEMVRSGT-IFTQFTCSMALNACSKLGYYSQGRIIHAQVIVSNILPDSAL 248

Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
           QN L+  Y  CG+   A  +F  +  +  ++SWN++I  +  N  GE A+ L+ K+    
Sbjct: 249 QNALLDMYYSCGDRRTALTLFSRIQ-IPSLISWNSMISWFAKNEEGEKAMGLFVKLLGMS 307

Query: 451 EV-PDSSTYLSILNACGHAGLTNDGLVIFNQMIE 483
              PD  T+ +I++A G    T+ G  +  Q+I+
Sbjct: 308 TCKPDEYTFTAIISATGEFRATDYGQPLHAQVIK 341


>gi|357115175|ref|XP_003559367.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Brachypodium distachyon]
          Length = 849

 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 181/625 (28%), Positives = 301/625 (48%), Gaps = 59/625 (9%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  S L+  Y  +G +  A  +FD + E++ V W++++ GY   G    ++  F  M 
Sbjct: 181 DMYVGSALIKMYADAGLLDGAREVFDGMDERDCVLWNVMMDGYVKAGDVASAVGLFRVMR 240

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
            SG  PN  T+   L   A   +L     +H L VK+GLE +                  
Sbjct: 241 ASGCDPNFATLACFLSVCAAEADLLSGVQLHTLAVKYGLEPEVAVANTLVSMYAKCQCLE 300

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               LF  +    LV+ N +++G + N L   A+ LF   + SGL P++VT+ +++    
Sbjct: 301 EAWRLFGLMPRDDLVTWNGMISGCVQNGLVDDALRLFCDMQKSGLQPDSVTLASLLPALT 360

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            L      + IHG  ++    +DV + ++++D+Y    D+  A  +F   +  DV+  + 
Sbjct: 361 ELNGFKQGKEIHGYIVRNCAHVDVFLVSALVDIYFKCRDVRMAQNVFDATKSIDVVIGST 420

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+  +V    +  A+K+FR +    I  + V + + +   A +  ++ G++LH  V+   
Sbjct: 421 MISGYVLNRMSEAAVKMFRYLLALGIKPNAVMVASTLPACASMAAMRIGQELHGYVLKNA 480

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
            +    + ++++ MYSKCG LD S  +F++++ K  V+W ++IS + QNG   EAL+ F 
Sbjct: 481 YEGRCYVESALMDMYSKCGRLDLSHYMFSKMSAKDEVTWNSMISSFAQNGEPEEALDLFR 540

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +M  E     +++T+ SIL+A   L A+    ++HGI  +         ++ LI  Y KC
Sbjct: 541 QMIMEGV-KYNNVTISSILSACAGLPAIYYGKEIHGIIIKGPIRADLFAESALIDMYGKC 599

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           GN++LA  VFE M   ++ VSWN+II  YG +G  + ++ L   M E G   D  T+L++
Sbjct: 600 GNLELALRVFEHMP-EKNEVSWNSIISAYGAHGLVKESVDLLCCMQEEGFKADHVTFLAL 658

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           ++AC HAG   +GL +F  M EE  ++P  EH  C+VDL +RAG L  A      +    
Sbjct: 659 ISACAHAGQVQEGLRLFRCMTEEYHIEPQVEHLSCMVDLYSRAGKLDKAMQFIADMPFKP 718

Query: 522 GPNIWRALLSGCVLH---------------------------------VGRFQDAEALRS 548
              IW ALL  C +H                                  GR+     +R 
Sbjct: 719 DAGIWGALLHACRVHRNVELAEIASQELFKLDPHNCGYYVLMSNINAVAGRWDGVSKMRR 778

Query: 549 GSQKKGIIKIPGISF--LNSTSRDF 571
             + K + KIPG S+  +N+TS  F
Sbjct: 779 LMKDKKVQKIPGYSWVDVNNTSHLF 803



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 115/360 (31%), Positives = 179/360 (49%), Gaps = 24/360 (6%)

Query: 119 NAIVAGFINNKLFQQAVLLF--NFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLT 176
           N ++ GF      + AVL +   +   S   P+  T+  V++ C ALG+  L  L+H  T
Sbjct: 114 NWLIRGFTMAGHHRLAVLFYVKMWAHPSSPRPDGHTLPYVVKSCAALGALHLGRLVHRTT 173

Query: 177 IKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDAL 236
             LGL  D+ V ++++ MY+    LD A ++F  M+ +D + W  MM  +V       A+
Sbjct: 174 RALGLDRDMYVGSALIKMYADAGLLDGAREVFDGMDERDCVLWNVMMDGYVKAGDVASAV 233

Query: 237 KIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMY 296
            +FR MR S    +   L   +SV A   DL  G QLH   V  GL+ E+ ++N++++MY
Sbjct: 234 GLFRVMRASGCDPNFATLACFLSVCAAEADLLSGVQLHTLAVKYGLEPEVAVANTLVSMY 293

Query: 297 SKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITL 356
           +KC  L+ +  +F  +    LV+W  +ISG VQNG   +AL  F  M Q+     DS+TL
Sbjct: 294 AKCQCLEEAWRLFGLMPRDDLVTWNGMISGCVQNGLVDDALRLFCDM-QKSGLQPDSVTL 352

Query: 357 VSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC----------LISSYSKCGNVDL 406
            S+L A  EL   +   ++HG            V+NC          L+  Y KC +V +
Sbjct: 353 ASLLPALTELNGFKQGKEIHGYI----------VRNCAHVDVFLVSALVDIYFKCRDVRM 402

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           A  VF+    + DVV  +T+I GY +N   E A+ ++  +   G  P++    S L AC 
Sbjct: 403 AQNVFDATKSI-DVVIGSTMISGYVLNRMSEAAVKMFRYLLALGIKPNAVMVASTLPACA 461



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 93/327 (28%), Positives = 151/327 (46%), Gaps = 12/327 (3%)

Query: 148 PNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLIL-----DVSVNNSVLDMYSCLMDLD 202
           P A  +L ++RGCVA     L   IH   +  GL+        ++   ++ MY       
Sbjct: 34  PCAYRLLALLRGCVAPSHLPLGLRIHARAVTSGLLDAAGPGPAALQTRLVGMYVLARRFR 93

Query: 203 AAIQIFREME---CKDVISWTRMMGLFVDFEYAGDALKIFREM--RKSRIICDTVALLNL 257
            A+ +F  +        + W  ++  F    +   A+  + +M    S    D   L  +
Sbjct: 94  DAVAVFSSLPRAAAAAALPWNWLIRGFTMAGHHRLAVLFYVKMWAHPSSPRPDGHTLPYV 153

Query: 258 ISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSL 317
           +   A LG L  G+ +H      GL  ++ + +++I MY+  G LD +R VF+ + E+  
Sbjct: 154 VKSCAALGALHLGRLVHRTTRALGLDRDMYVGSALIKMYADAGLLDGAREVFDGMDERDC 213

Query: 318 VSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHG 377
           V W  ++ GYV+ G    A+  F  MR    D  +  TL   L+     A L   +QLH 
Sbjct: 214 VLWNVMMDGYVKAGDVASAVGLFRVMRASGCDP-NFATLACFLSVCAAEADLLSGVQLHT 272

Query: 378 IAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGE 437
           +A + G     +V N L+S Y+KC  ++ A+ +F  M    D+V+WN +I G   NG  +
Sbjct: 273 LAVKYGLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMP-RDDLVTWNGMISGCVQNGLVD 331

Query: 438 TALALYHKMTETGEVPDSSTYLSILNA 464
            AL L+  M ++G  PDS T  S+L A
Sbjct: 332 DALRLFCDMQKSGLQPDSVTLASLLPA 358



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 154/326 (47%), Gaps = 23/326 (7%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  S L+  YFK   ++ A+N+FD     +VV  S +I GY +N   E ++K F ++
Sbjct: 382 VDVFLVSALVDIYFKCRDVRMAQNVFDATKSIDVVIGSTMISGYVLNRMSEAAVKMFRYL 441

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
           +  G+ PN+  +   L A A +  + + + +HG ++K   E                   
Sbjct: 442 LALGIKPNAVMVASTLPACASMAAMRIGQELHGYVLKNAYEGRCYVESALMDMYSKCGRL 501

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +F  +     V+ N++++ F  N   ++A+ LF      G+  N VT+ +++  C
Sbjct: 502 DLSHYMFSKMSAKDEVTWNSMISSFAQNGEPEEALDLFRQMIMEGVKYNNVTISSILSAC 561

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             L +    + IHG+ IK  +  D+   ++++DMY    +L+ A+++F  M  K+ +SW 
Sbjct: 562 AGLPAIYYGKEIHGIIIKGPIRADLFAESALIDMYGKCGNLELALRVFEHMPEKNEVSWN 621

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQL-HAQVVL 279
            ++  +       +++ +   M++     D V  L LIS  A  G ++ G +L       
Sbjct: 622 SIISAYGAHGLVKESVDLLCCMQEEGFKADHVTFLALISACAHAGQVQEGLRLFRCMTEE 681

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSS 305
             ++ ++   + ++ +YS+ G LD +
Sbjct: 682 YHIEPQVEHLSCMVDLYSRAGKLDKA 707


>gi|357127388|ref|XP_003565363.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Brachypodium distachyon]
          Length = 814

 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 176/561 (31%), Positives = 276/561 (49%), Gaps = 33/561 (5%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPE--KNVVSWSIVIHGYS--INGFHEKSMKAFSH 61
           ++ +++LS Y +SG++  A +LF   P   ++ V+W+++I  ++         ++  F  
Sbjct: 67  FSLNRMLSGYSRSGQLSAAHHLFLSSPPHLRDAVTWTVMIGAFASAPGARASDAVSLFRD 126

Query: 62  MMLSGLLPNSFTMVGVL---VAAAGLQNLELARSIHGLMVKFGL---------------- 102
           M+  G+ P+  T+  VL    A+ G     +  S+H   +K GL                
Sbjct: 127 MLREGVAPDRVTVATVLNLPPASGGTAAAIIIASLHPFALKLGLLHSNVVVCNTLLDAYC 186

Query: 103 -------ESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLT 155
                     +F+ + +   V+ NA++ G        +A+ LF   R  GL     T  T
Sbjct: 187 KHGLLAAARRVFQEMPHRDSVTYNAMMMGCSKEGSHAEALDLFAAMRRKGLAATRFTFST 246

Query: 156 VIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKD 215
           V+     +G   L   +HGL  +     +V VNNS+LD YS    LD   ++F EM  +D
Sbjct: 247 VLTVATGVGDLCLGRQVHGLVAR-ATSSNVFVNNSLLDFYSKCDCLDEMKKLFHEMIERD 305

Query: 216 VISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
            +S+  M+  +     A   L++FREM+        +   +L+SV   +  +  GKQ+HA
Sbjct: 306 NVSYNVMIAGYAWNRCASIVLRLFREMQSLSFDRQALPYASLLSVAGSVPHIGIGKQIHA 365

Query: 276 QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
           Q+VL GL SE  + N++I MYSKCG LD++++ F    +K+ VSWTA+I+G VQNG   E
Sbjct: 366 QLVLLGLSSEDLVGNALIDMYSKCGMLDAAKTNFINKNDKTGVSWTAMITGCVQNGQQEE 425

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLI 395
           AL  F  MR+    S D  T  S + AS  LA + +  QLH     +G        + L+
Sbjct: 426 ALQLFCGMRRAGL-SPDRATFSSTIKASSNLAMIGLGRQLHSYLIRSGHMSSVFSGSALL 484

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
             Y+KCG +D A   F+EM   R+ +SWN +I  Y   G  + A+ ++  M   G  PDS
Sbjct: 485 DMYTKCGCLDEALQTFDEMP-ERNSISWNAVISAYAHYGQAKNAIKMFEGMLCYGFKPDS 543

Query: 456 STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAG 515
            T+LS+L+AC H GL  + +  F  M  E  + P +EHY CV+D L R G       + G
Sbjct: 544 VTFLSVLSACSHNGLAEECMKYFELMEYEYGISPWKEHYSCVIDTLGRVGRFDKVQEMLG 603

Query: 516 KLLEGMGPNIWRALLSGCVLH 536
           ++     P IW ++L  C  H
Sbjct: 604 EMPFEDDPIIWSSILHSCRTH 624



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 128/486 (26%), Positives = 230/486 (47%), Gaps = 24/486 (4%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           LL  Y K G +  A  +F E+P ++ V+++ ++ G S  G H +++  F+ M   GL   
Sbjct: 181 LLDAYCKHGLLAAARRVFQEMPHRDSVTYNAMMMGCSKEGSHAEALDLFAAMRRKGLAAT 240

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVK--------------FGLESDLFEGLKNPYL- 115
            FT   VL  A G+ +L L R +HGL+ +              F  + D  + +K  +  
Sbjct: 241 RFTFSTVLTVATGVGDLCLGRQVHGLVARATSSNVFVNNSLLDFYSKCDCLDEMKKLFHE 300

Query: 116 ------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALC 169
                 VS N ++AG+  N+     + LF   +       A+   +++    ++    + 
Sbjct: 301 MIERDNVSYNVMIAGYAWNRCASIVLRLFREMQSLSFDRQALPYASLLSVAGSVPHIGIG 360

Query: 170 ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDF 229
           + IH   + LGL  +  V N+++DMYS    LDAA   F     K  +SWT M+   V  
Sbjct: 361 KQIHAQLVLLGLSSEDLVGNALIDMYSKCGMLDAAKTNFINKNDKTGVSWTAMITGCVQN 420

Query: 230 EYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLS 289
               +AL++F  MR++ +  D     + I  ++ L  +  G+QLH+ ++  G  S +   
Sbjct: 421 GQQEEALQLFCGMRRAGLSPDRATFSSTIKASSNLAMIGLGRQLHSYLIRSGHMSSVFSG 480

Query: 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD 349
           ++++ MY+KCG LD +   F+++ E++ +SW A+IS Y   G A+ A+  F  M      
Sbjct: 481 SALLDMYTKCGCLDEALQTFDEMPERNSISWNAVISAYAHYGQAKNAIKMFEGMLCYGFK 540

Query: 350 SVDSITLVSILTASGELAALEICLQ-LHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
             DS+T +S+L+A       E C++    + +E G   ++   +C+I +  + G  D   
Sbjct: 541 P-DSVTFLSVLSACSHNGLAEECMKYFELMEYEYGISPWKEHYSCVIDTLGRVGRFDKVQ 599

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
            +  EM F  D + W++I++    +G+ + A     K+   G   D++ Y+ + N    A
Sbjct: 600 EMLGEMPFEDDPIIWSSILHSCRTHGNQDLARVAAEKLFSMGST-DATPYVILSNIFAKA 658

Query: 469 GLTNDG 474
           G   D 
Sbjct: 659 GKWEDA 664


>gi|297834380|ref|XP_002885072.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330912|gb|EFH61331.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1134

 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 151/435 (34%), Positives = 240/435 (55%), Gaps = 6/435 (1%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F+ +    +VS  A+++G + N     ++ LF      G+ PN  T  T ++ C  L +
Sbjct: 426 VFDSMPERNVVSWTALMSGHVLNGDLNGSLSLFTEMGRQGIYPNEFTFSTNLKACGLLNA 485

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
                 IHG  +K+G  + V V NS++DMYS    ++ A ++FR M  + +ISW  M+  
Sbjct: 486 LEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRWMVGRSLISWNAMIAG 545

Query: 226 FVDFEYAGDALKIFREMRKSRII--CDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
           +V   Y   AL  F  M++++I    D   L +L+   +  G +  GKQ+H  +V  G  
Sbjct: 546 YVHAGYGSRALATFGMMQEAKIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFH 605

Query: 284 --SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
             S   ++ S++ +Y KCG+L S+R  F+QI EK+++SW+++I GY Q G   EA+  F 
Sbjct: 606 CPSSATITGSLVDLYVKCGNLFSARKAFDQIKEKTMISWSSLILGYAQEGDFVEAMGLFK 665

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           ++ QE +  +DS  L SI+    + A L+   Q+  +  +       SV N L+  Y KC
Sbjct: 666 RL-QELSSQIDSFVLSSIIGVFADFALLQQGKQMQALVVKLPSGLETSVSNSLVDMYLKC 724

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G VD A   F EM  L+DV+SW  +I GYG +G G+ A+++++KM      PD   YL++
Sbjct: 725 GLVDEAEKCFAEMQ-LKDVISWTVMITGYGKHGLGKKAVSIFNKMLRHNIEPDEVCYLAV 783

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L+AC H+G+  +G  +F++++E   +KP  EHY CVVDLL RAG L +A  L   +    
Sbjct: 784 LSACSHSGMIKEGEELFSKLLETQGIKPRVEHYACVVDLLGRAGRLKEAKHLVDTMPIKP 843

Query: 522 GPNIWRALLSGCVLH 536
              IW+ LLS C +H
Sbjct: 844 NVGIWQTLLSLCRVH 858



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 130/504 (25%), Positives = 238/504 (47%), Gaps = 49/504 (9%)

Query: 7   NSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSG 66
            S+ L+  Y K  +   A  +FD +PE+NVVSW+ ++ G+ +NG    S+  F+ M   G
Sbjct: 406 TSNYLIDMYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLNGDLNGSLSLFTEMGRQG 465

Query: 67  LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE----------------------S 104
           + PN FT    L A   L  LE    IHG  +K G E                       
Sbjct: 466 IYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAE 525

Query: 105 DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLV--PNAVTMLTVIRGCVA 162
            +F  +    L+S NA++AG+++     +A+  F   + + +   P+  T+ ++++ C +
Sbjct: 526 KVFRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKERPDEFTLTSLLKACSS 585

Query: 163 LGSRALCELIHGLTIKLGLILDVS--VNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
            G     + IHG  ++ G     S  +  S++D+Y    +L +A + F +++ K +ISW+
Sbjct: 586 TGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARKAFDQIKEKTMISWS 645

Query: 221 RMMGLFVDFEYAGD---ALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
               L + +   GD   A+ +F+ +++     D+  L ++I V A    L++GKQ+ A V
Sbjct: 646 ---SLILGYAQEGDFVEAMGLFKRLQELSSQIDSFVLSSIIGVFADFALLQQGKQMQALV 702

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           V      E  +SNS++ MY KCG +D +   F ++  K ++SWT +I+GY ++G  ++A+
Sbjct: 703 VKLPSGLETSVSNSLVDMYLKCGLVDEAEKCFAEMQLKDVISWTVMITGYGKHGLGKKAV 762

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG--FPRYRSVQNCLI 395
           + F KM +   +  D +  +++L+A      ++   +L     E     PR      C++
Sbjct: 763 SIFNKMLRHNIEP-DEVCYLAVLSACSHSGMIKEGEELFSKLLETQGIKPRVEHYA-CVV 820

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV--- 452
               + G +  A  + + M    +V  W T++    V  HG+  L       E G++   
Sbjct: 821 DLLGRAGRLKEAKHLVDTMPIKPNVGIWQTLLSLCRV--HGDIELG-----KEVGKILLR 873

Query: 453 ---PDSSTYLSILNACGHAGLTND 473
               + + Y+ + N  G AG  N+
Sbjct: 874 IDGKNPANYVMMSNLYGQAGYWNE 897



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 145/295 (49%), Gaps = 4/295 (1%)

Query: 183 LDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREM 242
           L++  +N ++DMY    +   A ++F  M  ++V+SWT +M   V       +L +F EM
Sbjct: 402 LNLITSNYLIDMYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLNGDLNGSLSLFTEM 461

Query: 243 RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDL 302
            +  I  +       +    +L  L++G Q+H   +  G +  + + NS++ MYSKCG +
Sbjct: 462 GRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRI 521

Query: 303 DSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK-TDSVDSITLVSILT 361
           + +  VF  +  +SL+SW A+I+GYV  G    AL  F  M++ K  +  D  TL S+L 
Sbjct: 522 NEAEKVFRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKERPDEFTLTSLLK 581

Query: 362 ASGELAALEICLQLHGIAFEAGF--PRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRD 419
           A      +    Q+HG    +GF  P   ++   L+  Y KCGN+  A   F+++   + 
Sbjct: 582 ACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARKAFDQIK-EKT 640

Query: 420 VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDG 474
           ++SW+++I GY   G    A+ L+ ++ E     DS    SI+       L   G
Sbjct: 641 MISWSSLILGYAQEGDFVEAMGLFKRLQELSSQIDSFVLSSIIGVFADFALLQQG 695



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/235 (36%), Positives = 120/235 (51%), Gaps = 5/235 (2%)

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
           L G    L  SN +I MY KC +   +  VF+ + E+++VSWTA++SG+V NG    +L+
Sbjct: 397 LSGSGLNLITSNYLIDMYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLNGDLNGSLS 456

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
            F +M ++     +  T  + L A G L ALE  LQ+HG   + GF     V N L+  Y
Sbjct: 457 LFTEMGRQGI-YPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMY 515

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET--GEVPDSS 456
           SKCG ++ A  VF  M   R ++SWN +I GY   G+G  ALA +  M E    E PD  
Sbjct: 516 SKCGRINEAEKVFRWM-VGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKERPDEF 574

Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEH-YGCVVDLLARAGCLSDA 510
           T  S+L AC   G+   G  I   ++      PS     G +VDL  + G L  A
Sbjct: 575 TLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSA 629


>gi|302775226|ref|XP_002971030.1| hypothetical protein SELMODRAFT_94889 [Selaginella moellendorffii]
 gi|300161012|gb|EFJ27628.1| hypothetical protein SELMODRAFT_94889 [Selaginella moellendorffii]
          Length = 846

 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 168/562 (29%), Positives = 283/562 (50%), Gaps = 44/562 (7%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           LL+ Y K+G + E+ +LF  +  KNVV+WS ++  Y+ NG HE +++ F  M+L G+ PN
Sbjct: 248 LLNFYAKAGLVHESRSLFSSMKVKNVVTWSAIVAAYAQNGHHEPAVELFREMLLDGIAPN 307

Query: 71  SFTMVGVLVAAAGLQN--LELARSIH--------------------GLMVKFGLESD--- 105
             T+  + +  A  Q   L+ AR +H                     +  + G  SD   
Sbjct: 308 KVTIALLRIVEACDQPDALDQARELHTRFFPGAAAAGDVVVATALVNMYGRCGSVSDAKT 367

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFR-----GSGLVPNAVTMLTVIRGC 160
           +F+ +++  + S NA++  +    L Q+++    FFR     G G+ P+A+T ++    C
Sbjct: 368 VFDEMQHRNITSWNAMLVTY---SLNQRSLEALRFFRTMLLEGEGVKPDAITFVSAADAC 424

Query: 161 VALGSRALCELIHGLTIK--LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
             +G  +    IH    +       DV + ++++ MY     L  A Q+  EM   +VIS
Sbjct: 425 GMMGDLSRAVEIHSRISQSWPSNQTDVVLGSALIKMYGNCRSLAGAAQVLDEMPRTNVIS 484

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           WT M+      E    A+ ++R M+      D V ++ +I   A L DLKRG + HAQ  
Sbjct: 485 WTSMILACEQNEDNEAAIHVYRAMQLHGHKPDPVTMVTVIKAAANLHDLKRGIEFHAQAA 544

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSL---VSWTAIISGYVQNGCARE 335
             G  +   + N+++ +Y   GDL ++ +VF ++ ++S+   V+W +++S + QNG   +
Sbjct: 545 AFGFATSTVVGNALVTLYGTSGDLQAAENVFKELLQQSVEDVVTWNSMLSAWNQNGLPNQ 604

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTA-SGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
           AL  F +M        D  T V+IL A +G+ + L   +++H +A   G      V N L
Sbjct: 605 ALRTFQRMLHHGRHP-DKTTFVNILNACAGDPSKLLQAVKIHALAAACGLDSDTDVANTL 663

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           +  YS+CGN+  A  VF  +   ++VVSW+ +      NG  + AL  +  M   G  P+
Sbjct: 664 LHMYSRCGNLSRARKVFHAIT-QKNVVSWSAMAAACAHNGDADGALQAFRGMLHGGIQPN 722

Query: 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLA 514
           + T++SIL+ C H GL ++ +     M  ++ +KP+ +HY C++DLLARAG    A  LA
Sbjct: 723 AVTFISILSGCSHTGLMDEAVSYLYAMSSDHNLKPTVQHYACLLDLLARAGKFHRAEELA 782

Query: 515 GKLLEGMGPNIWRALLSGCVLH 536
             L     P  W +LL  C++H
Sbjct: 783 THL---PNPVAWNSLLGACLVH 801



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 117/502 (23%), Positives = 236/502 (47%), Gaps = 41/502 (8%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + L+  Y +   + +A  +F  +  KNV +W+I+I  ++ NG   ++++ F  M 
Sbjct: 29  DRYLCNLLIQMYGRCRSVHDAIAVFHTVSRKNVFTWTILIVAHTHNGLFFEAVELFREMD 88

Query: 64  LSGLLPNSFTMVGVLVAAA--GLQNLELARSIHGLMVKFGLE------------------ 103
           + G+  + FT   +L A +  GL  L L ++IH  + + GL+                  
Sbjct: 89  VHGVQSDEFTFSAILEACSNLGLAFLSLGKTIHSRIHQQGLKLTSNPTVICSTAMIDAYA 148

Query: 104 --------SDLFEGLK----NPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAV 151
                   +++FE ++    +P L++  A++  +      ++A+LLF      GL P+  
Sbjct: 149 QNGHIEQAAEIFERMQLQGLDPDLIAWTAMMTAYNQLGHAREALLLFRKMDLQGLEPDRF 208

Query: 152 TMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM 211
             +  I  C ++ S     ++H   +   +  D  V N++L+ Y+    +  +  +F  M
Sbjct: 209 AFVAAIDACSSIPSLEQGTVLHSRLLASSVECDGVVGNALLNFYAKAGLVHESRSLFSSM 268

Query: 212 ECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICD--TVALLNLISVNAILGDLKR 269
           + K+V++W+ ++  +    +   A+++FREM    I  +  T+ALL ++        L +
Sbjct: 269 KVKNVVTWSAIVAAYAQNGHHEPAVELFREMLLDGIAPNKVTIALLRIVEACDQPDALDQ 328

Query: 270 GKQLHAQVV-LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYV 328
            ++LH +         ++ ++ +++ MY +CG +  +++VF+++  +++ SW A++  Y 
Sbjct: 329 ARELHTRFFPGAAAAGDVVVATALVNMYGRCGSVSDAKTVFDEMQHRNITSWNAMLVTYS 388

Query: 329 QNGCAREALNQFIKMRQEKTD-SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRY 387
            N  + EAL  F  M  E      D+IT VS   A G +  L   +++H       +P  
Sbjct: 389 LNQRSLEALRFFRTMLLEGEGVKPDAITFVSAADACGMMGDLSRAVEIHS-RISQSWPSN 447

Query: 388 RS---VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH 444
           ++   + + LI  Y  C ++  A  V +EM    +V+SW ++I     N   E A+ +Y 
Sbjct: 448 QTDVVLGSALIKMYGNCRSLAGAAQVLDEMP-RTNVISWTSMILACEQNEDNEAAIHVYR 506

Query: 445 KMTETGEVPDSSTYLSILNACG 466
            M   G  PD  T ++++ A  
Sbjct: 507 AMQLHGHKPDPVTMVTVIKAAA 528



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 110/421 (26%), Positives = 200/421 (47%), Gaps = 37/421 (8%)

Query: 85  QNLELARSIHGLMVKFGLESD----------------------LFEGLKNPYLVSCNAIV 122
           +NL+  R++H  M+  G   D                      +F  +    + +   ++
Sbjct: 9   KNLDAGRAVHLQMITSGYHRDRYLCNLLIQMYGRCRSVHDAIAVFHTVSRKNVFTWTILI 68

Query: 123 AGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG------SRALCELIHGLT 176
               +N LF +AV LF      G+  +  T   ++  C  LG       + +   IH   
Sbjct: 69  VAHTHNGLFFEAVELFREMDVHGVQSDEFTFSAILEACSNLGLAFLSLGKTIHSRIHQQG 128

Query: 177 IKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK----DVISWTRMMGLFVDFEYA 232
           +KL     V  + +++D Y+    ++ A +IF  M+ +    D+I+WT MM  +    +A
Sbjct: 129 LKLTSNPTVICSTAMIDAYAQNGHIEQAAEIFERMQLQGLDPDLIAWTAMMTAYNQLGHA 188

Query: 233 GDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSI 292
            +AL +FR+M    +  D  A +  I   + +  L++G  LH++++   ++ +  + N++
Sbjct: 189 REALLLFRKMDLQGLEPDRFAFVAAIDACSSIPSLEQGTVLHSRLLASSVECDGVVGNAL 248

Query: 293 IAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK-TDSV 351
           +  Y+K G +  SRS+F+ +  K++V+W+AI++ Y QNG    A+  F +M  +    + 
Sbjct: 249 LNFYAKAGLVHESRSLFSSMKVKNVVTWSAIVAAYAQNGHHEPAVELFREMLLDGIAPNK 308

Query: 352 DSITLVSILTASGELAALEICLQLHGIAFE-AGFPRYRSVQNCLISSYSKCGNVDLAYIV 410
            +I L+ I+ A  +  AL+   +LH   F  A       V   L++ Y +CG+V  A  V
Sbjct: 309 VTIALLRIVEACDQPDALDQARELHTRFFPGAAAAGDVVVATALVNMYGRCGSVSDAKTV 368

Query: 411 FEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE--VPDSSTYLSILNACGHA 468
           F+EM   R++ SWN ++  Y +N     AL  +  M   GE   PD+ T++S  +ACG  
Sbjct: 369 FDEMQH-RNITSWNAMLVTYSLNQRSLEALRFFRTMLLEGEGVKPDAITFVSAADACGMM 427

Query: 469 G 469
           G
Sbjct: 428 G 428



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 121/277 (43%), Gaps = 26/277 (9%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           S L+  Y     +  A  + DE+P  NV+SW+ +I     N  +E ++  +  M L G  
Sbjct: 455 SALIKMYGNCRSLAGAAQVLDEMPRTNVISWTSMILACEQNEDNEAAIHVYRAMQLHGHK 514

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------FEGLKNP 113
           P+  TMV V+ AAA L +L+     H     FG  +                  +  +N 
Sbjct: 515 PDPVTMVTVIKAAANLHDLKRGIEFHAQAAAFGFATSTVVGNALVTLYGTSGDLQAAENV 574

Query: 114 Y----------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
           +          +V+ N++++ +  N L  QA+  F      G  P+  T + ++  C   
Sbjct: 575 FKELLQQSVEDVVTWNSMLSAWNQNGLPNQALRTFQRMLHHGRHPDKTTFVNILNACAGD 634

Query: 164 GSRALCEL-IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
            S+ L  + IH L    GL  D  V N++L MYS   +L  A ++F  +  K+V+SW+ M
Sbjct: 635 PSKLLQAVKIHALAAACGLDSDTDVANTLLHMYSRCGNLSRARKVFHAITQKNVVSWSAM 694

Query: 223 MGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLIS 259
                    A  AL+ FR M    I  + V  ++++S
Sbjct: 695 AAACAHNGDADGALQAFRGMLHGGIQPNAVTFISILS 731



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 41/71 (57%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ LL  Y + G +  A  +F  I +KNVVSWS +    + NG  + +++AF  M+  G+
Sbjct: 660 ANTLLHMYSRCGNLSRARKVFHAITQKNVVSWSAMAAACAHNGDADGALQAFRGMLHGGI 719

Query: 68  LPNSFTMVGVL 78
            PN+ T + +L
Sbjct: 720 QPNAVTFISIL 730


>gi|356558562|ref|XP_003547574.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 846

 Score =  256 bits (655), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 177/618 (28%), Positives = 298/618 (48%), Gaps = 57/618 (9%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  S L+  Y  +G I +A  +FDE+P+++ + W++++HGY  +G    +M  F  M
Sbjct: 178 VDLFVGSALIKLYADNGYICDARRVFDELPQRDTILWNVMLHGYVKSGDFNNAMGTFCGM 237

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
             S  + NS T   +L   A      L   +HGL++  G E D                 
Sbjct: 238 RTSYSMVNSVTYTCILSICATRGKFCLGTQVHGLVIGSGFEFDPQVANTLVAMYSKCGNL 297

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                LF  +     V+ N ++AG++ N    +A  LFN    +G+ P++VT  + +   
Sbjct: 298 FDARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSI 357

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
           +  GS   C+ +H   ++  +  DV + ++++D+Y    D++ A +IF++    DV   T
Sbjct: 358 LESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDIYFKGGDVEMARKIFQQNTLVDVAVCT 417

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+  +V      DA+  FR + +  ++ +++ + +++   A L  LK GK+LH  ++  
Sbjct: 418 AMISGYVLHGLNIDAINTFRWLIQEGMVPNSLTMASVLPACAALAALKLGKELHCDILKK 477

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
            L++ + + ++I  MY+KCG LD +   F +++E   + W ++IS + QNG    A++ F
Sbjct: 478 QLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSETDSICWNSMISSFSQNGKPEMAVDLF 537

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            +M        DS++L S L+++  L AL    ++HG      F     V + LI  YSK
Sbjct: 538 RQMGMSGA-KFDSVSLSSALSSAANLPALYYGKEMHGYVIRNAFSSDTFVASALIDMYSK 596

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CG + LA  VF  M   ++ VSWN+II  YG +G     L L+H+M   G  PD  T+L 
Sbjct: 597 CGKLALARCVFNLMAG-KNEVSWNSIIAAYGNHGCARECLDLFHEMLRAGVHPDHVTFLV 655

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           I++ACGHAGL  +G+  F+ M  E  +    EHY C+VDL  RAG L +A      +   
Sbjct: 656 IISACGHAGLVGEGIHYFHCMTREYGIGARMEHYACMVDLYGRAGRLHEAFDAIKSMPFT 715

Query: 521 MGPNIWRALLSGCVLH---------------------------------VGRFQDAEALR 547
               +W  LL  C LH                                  G +     +R
Sbjct: 716 PDAGVWGTLLGACRLHGNVELAKLASRHLLELDPKNSGYYVLLSNVHADAGEWGSVLKVR 775

Query: 548 SGSQKKGIIKIPGISFLN 565
              ++KG+ KIPG S+++
Sbjct: 776 RLMKEKGVQKIPGYSWID 793



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 130/469 (27%), Positives = 225/469 (47%), Gaps = 24/469 (5%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           SS++L  Y   G+I +  NLF  +   N + W+ +I G  + G+ + ++  +  M+ S +
Sbjct: 82  SSRVLGLYVLCGRISDGGNLFFGLELCNALPWNWMIRGLYMLGWFDFALLFYFKMLGSNV 141

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG-------LKNPYLVSC-- 118
            P+ +T   V+ A  GL N+ L   +H      G   DLF G         N Y+     
Sbjct: 142 SPDKYTFPYVIKACGGLNNVPLCMVVHNTARSLGFHVDLFVGSALIKLYADNGYICDARR 201

Query: 119 -------------NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
                        N ++ G++ +  F  A+  F   R S  + N+VT   ++  C   G 
Sbjct: 202 VFDELPQRDTILWNVMLHGYVKSGDFNNAMGTFCGMRTSYSMVNSVTYTCILSICATRGK 261

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
             L   +HGL I  G   D  V N+++ MYS   +L  A ++F  M   D ++W  ++  
Sbjct: 262 FCLGTQVHGLVIGSGFEFDPQVANTLVAMYSKCGNLFDARKLFNTMPQTDTVTWNGLIAG 321

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +V   +  +A  +F  M  + +  D+V   + +      G L+  K++H+ +V   +  +
Sbjct: 322 YVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFD 381

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           + L +++I +Y K GD++ +R +F Q T   +   TA+ISGYV +G   +A+N F  + Q
Sbjct: 382 VYLKSALIDIYFKGGDVEMARKIFQQNTLVDVAVCTAMISGYVLHGLNIDAINTFRWLIQ 441

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
           E     +S+T+ S+L A   LAAL++  +LH    +       +V + +   Y+KCG +D
Sbjct: 442 EGMVP-NSLTMASVLPACAALAALKLGKELHCDILKKQLENIVNVGSAITDMYAKCGRLD 500

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           LAY  F  M    D + WN++I  +  NG  E A+ L+ +M  +G   D
Sbjct: 501 LAYEFFRRMS-ETDSICWNSMISSFSQNGKPEMAVDLFRQMGMSGAKFD 548



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 111/376 (29%), Positives = 189/376 (50%), Gaps = 5/376 (1%)

Query: 89  LARSIHGLMVKFGLESD---LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSG 145
           L+  + GL V  G  SD   LF GL+    +  N ++ G      F  A+L +    GS 
Sbjct: 81  LSSRVLGLYVLCGRISDGGNLFFGLELCNALPWNWMIRGLYMLGWFDFALLFYFKMLGSN 140

Query: 146 LVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAI 205
           + P+  T   VI+ C  L +  LC ++H     LG  +D+ V ++++ +Y+    +  A 
Sbjct: 141 VSPDKYTFPYVIKACGGLNNVPLCMVVHNTARSLGFHVDLFVGSALIKLYADNGYICDAR 200

Query: 206 QIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILG 265
           ++F E+  +D I W  M+  +V      +A+  F  MR S  + ++V    ++S+ A  G
Sbjct: 201 RVFDELPQRDTILWNVMLHGYVKSGDFNNAMGTFCGMRTSYSMVNSVTYTCILSICATRG 260

Query: 266 DLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIIS 325
               G Q+H  V+  G + + +++N+++AMYSKCG+L  +R +FN + +   V+W  +I+
Sbjct: 261 KFCLGTQVHGLVIGSGFEFDPQVANTLVAMYSKCGNLFDARKLFNTMPQTDTVTWNGLIA 320

Query: 326 GYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFP 385
           GYVQNG   EA   F  M        DS+T  S L +  E  +L  C ++H        P
Sbjct: 321 GYVQNGFTDEAAPLFNAMISAGVKP-DSVTFASFLPSILESGSLRHCKEVHSYIVRHRVP 379

Query: 386 RYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHK 445
               +++ LI  Y K G+V++A  +F++   L DV     +I GY ++G    A+  +  
Sbjct: 380 FDVYLKSALIDIYFKGGDVEMARKIFQQ-NTLVDVAVCTAMISGYVLHGLNIDAINTFRW 438

Query: 446 MTETGEVPDSSTYLSI 461
           + + G VP+S T  S+
Sbjct: 439 LIQEGMVPNSLTMASV 454



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 125/273 (45%), Gaps = 14/273 (5%)

Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISG 326
           +++ +Q+H Q+++GG+     LS+ ++ +Y  CG +    ++F  +   + + W  +I G
Sbjct: 60  VQQARQVHTQIIVGGMSDVCALSSRVLGLYVLCGRISDGGNLFFGLELCNALPWNWMIRG 119

Query: 327 YVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPR 386
               G    AL  + KM      S D  T   ++ A G L  + +C+ +H  A   GF  
Sbjct: 120 LYMLGWFDFALLFYFKMLGSNV-SPDKYTFPYVIKACGGLNNVPLCMVVHNTARSLGFHV 178

Query: 387 YRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM 446
              V + LI  Y+  G +  A  VF+E+   RD + WN +++GY  +G    A+  +  M
Sbjct: 179 DLFVGSALIKLYADNGYICDARRVFDELP-QRDTILWNVMLHGYVKSGDFNNAMGTFCGM 237

Query: 447 TETGEVPDSSTYLSILNACGHA-----GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLL 501
             +  + +S TY  IL+ C        G    GLVI +    + +V  +      +V + 
Sbjct: 238 RTSYSMVNSVTYTCILSICATRGKFCLGTQVHGLVIGSGFEFDPQVANT------LVAMY 291

Query: 502 ARAGCLSDASGLAGKLLEGMGPNIWRALLSGCV 534
           ++ G L DA  L   + +      W  L++G V
Sbjct: 292 SKCGNLFDARKLFNTMPQ-TDTVTWNGLIAGYV 323



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 86/206 (41%), Gaps = 14/206 (6%)

Query: 343 MRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
           M + +T    +  L S+  A  + + ++   Q+H      G     ++ + ++  Y  CG
Sbjct: 34  MSKPETQDYLTTQLESLFRACSDASVVQQARQVHTQIIVGGMSDVCALSSRVLGLYVLCG 93

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
            +     +F  +  L + + WN +I G  + G  + AL  Y KM  +   PD  T+  ++
Sbjct: 94  RISDGGNLFFGLE-LCNALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVI 152

Query: 463 NACGHAGLTNDGLVIFNQMIEENKVKPSQEHY-----GCVVDLLARAGCLSDASGLAGKL 517
            ACG  GL N  L     M+  N  +    H        ++ L A  G + DA  +  +L
Sbjct: 153 KACG--GLNNVPLC----MVVHNTARSLGFHVDLFVGSALIKLYADNGYICDARRVFDEL 206

Query: 518 LEGMGPNIWRALLSGCVLHVGRFQDA 543
            +     +W  +L G V   G F +A
Sbjct: 207 PQ-RDTILWNVMLHGYV-KSGDFNNA 230


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  256 bits (655), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 143/479 (29%), Positives = 262/479 (54%), Gaps = 18/479 (3%)

Query: 60  SHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCN 119
           + +++ GL  + F +  ++ A++   ++  AR +             F+ L  P +   N
Sbjct: 42  ARLLVLGLQFSGFLITKLIHASSSYGDITFARQV-------------FDDLPRPQVFPWN 88

Query: 120 AIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKL 179
           AI+ G+  N  FQ A+L+++  + + + P++ T   +++ C  L    +   +H    +L
Sbjct: 89  AIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRL 148

Query: 180 GLILDVSVNNSVLDMYSCLMDLDAAIQIFR--EMECKDVISWTRMMGLFVDFEYAGDALK 237
           G   DV V N ++ +Y+    L  A  +F    +  + ++SWT ++  +       +AL+
Sbjct: 149 GFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALE 208

Query: 238 IFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYS 297
           IF +MRK  +  D VAL+++++    L DL++G+ +HA V+  GL++E  L  S+  MY+
Sbjct: 209 IFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLLISLNTMYA 268

Query: 298 KCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLV 357
           KCG + +++ +F+++   +L+ W A+ISGY +NG A++A++ F +M   K    D+I++ 
Sbjct: 269 KCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEM-INKDVRPDTISIT 327

Query: 358 SILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFL 417
           S ++A  ++ +LE    +      + +     + + LI  ++KCG+V+ A  VF+     
Sbjct: 328 SAISACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECARSVFDRT-LD 386

Query: 418 RDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVI 477
           RDVV W+ +I GYG++G    A++LY  M   G  P+  T+L +L AC H+G+  +G   
Sbjct: 387 RDVVVWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGLLIACNHSGMVREGWWF 446

Query: 478 FNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
           FN+M  ++K+ P Q+HY C++DLL RAG L  A  +   +    G  +W ALLS C  H
Sbjct: 447 FNRM-ADHKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKH 504



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 116/453 (25%), Positives = 218/453 (48%), Gaps = 25/453 (5%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           +KL+      G I  A  +FD++P   V  W+ +I GYS N   + ++  +S M L+ + 
Sbjct: 57  TKLIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVS 116

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--------------------- 107
           P+SFT   +L A  GL +L++ R +H  + + G E+D+F                     
Sbjct: 117 PDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTV 176

Query: 108 -EGLKNP--YLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
            EGL  P   +VS  AIV+ +  N    +A+ +F+  R   + P+ V +++V+     L 
Sbjct: 177 FEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQ 236

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
                  IH   +K+GL  +  +  S+  MY+    +  A  +F +M+  ++I W  M+ 
Sbjct: 237 DLEQGRSIHASVMKMGLETEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMIS 296

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            +    +A DA+ +F EM    +  DT+++ + IS  A +G L++ + +   V     + 
Sbjct: 297 GYAKNGFAKDAIDLFHEMINKDVRPDTISITSAISACAQVGSLEQARWMDEYVSRSDYRD 356

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           ++ +S+++I M++KCG ++ +RSVF++  ++ +V W+A+I GY  +G AREA++ +  M 
Sbjct: 357 DVFISSALIDMFAKCGSVECARSVFDRTLDRDVVVWSAMIVGYGLHGQAREAISLYRAME 416

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
           ++     D +T + +L A      +           +      +    C+I    + G++
Sbjct: 417 RDGVHPND-VTFLGLLIACNHSGMVREGWWFFNRMADHKINPQQQHYACIIDLLGRAGHL 475

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGE 437
           D AY V + M     V  W  ++     + H E
Sbjct: 476 DQAYEVIKCMPVQPGVTVWGALLSACKKHRHVE 508



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 108/392 (27%), Positives = 196/392 (50%), Gaps = 7/392 (1%)

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
           +A    IH   + LGL     +   ++   S   D+  A Q+F ++    V  W  ++  
Sbjct: 34  KAQLRQIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRG 93

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +    +  DAL ++ +M+ +R+  D+    +L+     L  L+ G+ +HAQV   G +++
Sbjct: 94  YSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEAD 153

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFN--QITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
           + + N +IA+Y+KC  L  +R+VF    + E+++VSWTAI+S Y QNG   EAL  F +M
Sbjct: 154 VFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQM 213

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
           R+      D + LVS+L A   L  LE    +H    + G      +   L + Y+KCG 
Sbjct: 214 RKMDVKP-DCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLLISLNTMYAKCGQ 272

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           V  A I+F++M    +++ WN +I GY  NG  + A+ L+H+M      PD+ +  S ++
Sbjct: 273 VATAKILFDKMK-SPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTISITSAIS 331

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
           AC   G       + ++ +  +  +        ++D+ A+ G +  A  +  + L+    
Sbjct: 332 ACAQVGSLEQARWM-DEYVSRSDYRDDVFISSALIDMFAKCGSVECARSVFDRTLD-RDV 389

Query: 524 NIWRALLSGCVLHVGRFQDAEALRSGSQKKGI 555
            +W A++ G  LH G+ ++A +L    ++ G+
Sbjct: 390 VVWSAMIVGYGLH-GQAREAISLYRAMERDGV 420



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 46/77 (59%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + SS L+  + K G ++ A ++FD   +++VV WS +I GY ++G   +++  +  M 
Sbjct: 357 DVFISSALIDMFAKCGSVECARSVFDRTLDRDVVVWSAMIVGYGLHGQAREAISLYRAME 416

Query: 64  LSGLLPNSFTMVGVLVA 80
             G+ PN  T +G+L+A
Sbjct: 417 RDGVHPNDVTFLGLLIA 433


>gi|359492597|ref|XP_002282781.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g04860-like [Vitis vinifera]
          Length = 724

 Score =  256 bits (655), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 166/553 (30%), Positives = 286/553 (51%), Gaps = 30/553 (5%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y ++  L  Y K G I  A++LF+E+P ++VVSW+ +I GYS NG+   +++ F  M+  
Sbjct: 89  YLTTAFLDFYGKLGCIYYAQHLFEEMPRRDVVSWNALICGYSRNGYDYDALEVFVQMLRE 148

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-------------------- 105
           G  P   T+VG++ +      +   ++IHG  +K GL+ D                    
Sbjct: 149 GFPPCQRTLVGLVPSCGRPDIIFQGKAIHGFGIKSGLDLDCRVKNALTSMYAKCADLQAA 208

Query: 106 --LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
             LFE +     VS N ++  +  N LF +A+L+F   +   +  N VT+++++     L
Sbjct: 209 EVLFEEIFEKTEVSWNTMIGAYGQNGLFDEAMLVFKQMQKERVEVNYVTIISLLSANAHL 268

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
            S       H   IK G   D SV  S++  Y+   ++++A  ++  M  ++++S T M+
Sbjct: 269 DS------THCYVIKTGFATDASVITSLVCSYAGCGNIESAGLLYNLMPQRNLVSLTAMI 322

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
             + +    G  ++ F +M + ++  D VA+++++        +  G  +HA  +  GL 
Sbjct: 323 SGYAEKGNMGLVVECFTQMLQLKMKPDAVAMVSILHGFTDPTFIGSGLGIHAYGLKTGLC 382

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
           ++  + N +I+MYSK GD+++  S+F+++ EK L+SW ++IS  +Q G   +A+  F +M
Sbjct: 383 ADCLVVNGLISMYSKFGDIETVFSLFSEMGEKQLISWNSVISACIQVGRTSDAMELFCQM 442

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
           R     S D+IT+ S+L    E+  L+   +LH             ++  L+  Y KCG 
Sbjct: 443 RM-YGHSPDAITIASLLAGCSEVGFLQFGERLHNYVLRNNLDMEDFLETALVDMYIKCGR 501

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           ++ A  VF+ +     + +WNT+I GYG++GH   AL+ Y +M E G  PD  T+L +L+
Sbjct: 502 LESAERVFKSIK-EPCLATWNTMISGYGLSGHEHRALSCYSEMQEQGLKPDRITFLGVLS 560

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
           AC H GL  +G   F  M E+  + P  +H  C+VDLL+RAG L +A      +      
Sbjct: 561 ACTHGGLVWEGKRYFRSMREDFGMIPGLQHNACMVDLLSRAGFLEEAVIFVKNMEVEPDS 620

Query: 524 NIWRALLSGCVLH 536
            IW ALL+ C +H
Sbjct: 621 AIWGALLTSCCIH 633



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 112/400 (28%), Positives = 185/400 (46%), Gaps = 34/400 (8%)

Query: 162 ALGSRAL-------CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
           A+G+RAL          I     K G    V +  + LD Y  L  +  A  +F EM  +
Sbjct: 58  AVGTRALDANTKIEANQIQTHLRKSGFNQYVYLTTAFLDFYGKLGCIYYAQHLFEEMPRR 117

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
           DV+SW  ++  +    Y  DAL++F +M +         L+ L+        + +GK +H
Sbjct: 118 DVVSWNALICGYSRNGYDYDALEVFVQMLREGFPPCQRTLVGLVPSCGRPDIIFQGKAIH 177

Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
              +  GL  + R+ N++ +MY+KC DL ++  +F +I EK+ VSW  +I  Y QNG   
Sbjct: 178 GFGIKSGLDLDCRVKNALTSMYAKCADLQAAEVLFEEIFEKTEVSWNTMIGAYGQNGLFD 237

Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
           EA+  F +M++E+ + V+ +T++S+L+A+  L +       H    + GF    SV   L
Sbjct: 238 EAMLVFKQMQKERVE-VNYVTIISLLSANAHLDS------THCYVIKTGFATDASVITSL 290

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           + SY+ CGN++ A +++  M   R++VS   +I GY   G+    +  + +M +    PD
Sbjct: 291 VCSYAGCGNIESAGLLYNLMP-QRNLVSLTAMISGYAEKGNMGLVVECFTQMLQLKMKPD 349

Query: 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLA 514
           +   +SIL+          GL I    ++           G   D L   G +S  S   
Sbjct: 350 AVAMVSILHGFTDPTFIGSGLGIHAYGLKT----------GLCADCLVVNGLISMYSKFG 399

Query: 515 G-----KLLEGMGPN---IWRALLSGCVLHVGRFQDAEAL 546
                  L   MG      W +++S C+  VGR  DA  L
Sbjct: 400 DIETVFSLFSEMGEKQLISWNSVISACI-QVGRTSDAMEL 438



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 104/238 (43%), Gaps = 31/238 (13%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C D    + L+S Y K G I+   +LF E+ EK ++SW+ VI      G    +M+ F  
Sbjct: 382 CADCLVVNGLISMYSKFGDIETVFSLFSEMGEKQLISWNSVISACIQVGRTSDAMELFCQ 441

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------- 105
           M + G  P++ T+  +L   + +  L+    +H  +++  L+ +                
Sbjct: 442 MRMYGHSPDAITIASLLAGCSEVGFLQFGERLHNYVLRNNLDMEDFLETALVDMYIKCGR 501

Query: 106 ------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                 +F+ +K P L + N +++G+  +    +A+  ++  +  GL P+ +T L V+  
Sbjct: 502 LESAERVFKSIKEPCLATWNTMISGYGLSGHEHRALSCYSEMQEQGLKPDRITFLGVLSA 561

Query: 160 C-----VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME 212
           C     V  G R        +    G+I  +  N  ++D+ S    L+ A+   + ME
Sbjct: 562 CTHGGLVWEGKR----YFRSMREDFGMIPGLQHNACMVDLLSRAGFLEEAVIFVKNME 615


>gi|449475590|ref|XP_004154496.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g09040, mitochondrial-like [Cucumis sativus]
          Length = 974

 Score =  256 bits (655), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 162/557 (29%), Positives = 280/557 (50%), Gaps = 30/557 (5%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y  S L++ Y K  K+  A+ +F+ + E+N+V W+ ++ G++ NG  ++ M+ FS M   
Sbjct: 345 YVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRH 404

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF----------------EG 109
           G  P+ FT   +  A A L  L     +H +M+K    S+LF                E 
Sbjct: 405 GPQPDEFTFTSIFSACASLHYLNFGGQLHTVMIKNKFASNLFVANALVDMYAKSGALKEA 464

Query: 110 LKNPYL------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
            K   L      VS NAI+ G++  +   +A  +F     +G++P+ V++ +++  C  +
Sbjct: 465 RKQFELMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANV 524

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
                 +  H L +K+GL       +S++DMY     + AA  +F  M  ++V+S   ++
Sbjct: 525 QELKRGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPSRNVVSVNALI 584

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV-LGGL 282
             +    +  +A+ +F+E++   +    V    L+        L  G+Q+H QV+  G L
Sbjct: 585 AGYT-MGHLEEAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGFL 643

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISGYVQNGCAREALNQFI 341
            S   +  S++ +Y        S ++F+++   K LV WTA+ISGY Q     +AL  + 
Sbjct: 644 SSSEMVCVSLLCLYMNSQRFVDSETLFSELQYPKGLVVWTALISGYAQQNHHEKALQFYQ 703

Query: 342 KMRQEKTDSV--DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
            MR   +D++  D     S+L A   +++L+   ++H + F  GF       + LI  Y+
Sbjct: 704 HMR---SDNILPDQAAFASVLRACAGMSSLQNGQEIHSLIFHTGFNMDEVTCSSLIDMYA 760

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           KCG+V  +  VF EM    +V+SWN++I G   NG+ E AL ++ +M +   +PD  T+L
Sbjct: 761 KCGDVKGSLQVFREMPRRNNVISWNSMIVGLAKNGYAEEALEIFKQMEQQSIIPDEVTFL 820

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519
            +L+AC HAG  ++G  +F+ M+   K++P  +H GC+VD+L R G L++A     KL  
Sbjct: 821 GVLSACSHAGRVSEGRKVFDLMVNNYKLQPRVDHLGCMVDILGRWGFLNEAEEFINKLGC 880

Query: 520 GMGPNIWRALLSGCVLH 536
              P +W  LL  C  H
Sbjct: 881 KADPMLWSTLLGACRKH 897



 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 131/475 (27%), Positives = 224/475 (47%), Gaps = 59/475 (12%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTM 74
           Y K G +  A+  F  + +K+V +W+ V+  Y  +G     +++F  M    + PN FT 
Sbjct: 86  YVKCGNVDFAQKAFSRLEKKDVFAWNSVLSMYLDHGLFATVVQSFVCMWNHEVRPNEFTF 145

Query: 75  VGVLVAAAGLQNLELARSIHGLMVK--FGLES-------DL-------------FEGLKN 112
             VL A +GLQ++   R +H  + K  FG  S       D+             F+G  N
Sbjct: 146 AMVLSACSGLQDVNFGRQVHCGVFKTGFGFRSFCQGGLIDMYAKCRYLRDARLVFDGALN 205

Query: 113 PYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELI 172
              VS  A++AG++ +    +AV +F+  +  G  P+ +T++TV+   VALG        
Sbjct: 206 LDTVSWTALIAGYVRDGFPMEAVKVFDRMQRVGHAPDQITLVTVVNAYVALGR------- 258

Query: 173 HGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYA 232
                                       L  A ++F ++   +V++W  M+       +A
Sbjct: 259 ----------------------------LADARKLFTQIPNPNVVAWNVMISGHAKRGFA 290

Query: 233 GDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSI 292
            +A+  F E++K+ +     +L +++S  A L  L  G  +HAQ    GL   + + +++
Sbjct: 291 EEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLNYGSMVHAQATKEGLDDNVYVGSAL 350

Query: 293 IAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVD 352
           + MY+KC  +D+++ VFN + E+++V W A++ G+ QNG A+E +  F  M++      D
Sbjct: 351 VNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQP-D 409

Query: 353 SITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFE 412
             T  SI +A   L  L    QLH +  +  F     V N L+  Y+K G +  A   FE
Sbjct: 410 EFTFTSIFSACASLHYLNFGGQLHTVMIKNKFASNLFVANALVDMYAKSGALKEARKQFE 469

Query: 413 EMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
            M  + D VSWN II GY    + + A  ++ +M   G +PD  +  SI++AC +
Sbjct: 470 LMK-IHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACAN 523



 Score =  194 bits (494), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 148/524 (28%), Positives = 248/524 (47%), Gaps = 20/524 (3%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+  Y K   +++A  +FD     + VSW+ +I GY  +GF  +++K F  M   G  P+
Sbjct: 183 LIDMYAKCRYLRDARLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDRMQRVGHAPD 242

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKL 130
             T+V V+ A   L  L  AR              LF  + NP +V+ N +++G      
Sbjct: 243 QITLVTVVNAYVALGRLADARK-------------LFTQIPNPNVVAWNVMISGHAKRGF 289

Query: 131 FQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNS 190
            ++A+  F   + +GL     ++ +V+    +L       ++H    K GL  +V V ++
Sbjct: 290 AEEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLNYGSMVHAQATKEGLDDNVYVGSA 349

Query: 191 VLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICD 250
           +++MY+    +DAA Q+F  +  ++++ W  M+G F     A + ++ F  M++     D
Sbjct: 350 LVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPD 409

Query: 251 TVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFN 310
                ++ S  A L  L  G QLH  ++     S L ++N+++ MY+K G L  +R  F 
Sbjct: 410 EFTFTSIFSACASLHYLNFGGQLHTVMIKNKFASNLFVANALVDMYAKSGALKEARKQFE 469

Query: 311 QITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV--DSITLVSILTASGELAA 368
            +     VSW AII GYVQ     EA   F   R+  ++ V  D ++L SI++A   +  
Sbjct: 470 LMKIHDNVSWNAIIVGYVQEEYNDEA---FFMFRRMVSNGVLPDEVSLASIVSACANVQE 526

Query: 369 LEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIY 428
           L+   Q H +  + G        + LI  Y KCG V  A  VF  M   R+VVS N +I 
Sbjct: 527 LKRGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMP-SRNVVSVNALIA 585

Query: 429 GYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVK 488
           GY + GH E A+ L+ ++   G  P   T+  +L+ C  A + N G  I  Q+++   + 
Sbjct: 586 GYTM-GHLEEAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGFLS 644

Query: 489 PSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSG 532
            S+     ++ L   +    D+  L  +L    G  +W AL+SG
Sbjct: 645 SSEMVCVSLLCLYMNSQRFVDSETLFSELQYPKGLVVWTALISG 688



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 122/491 (24%), Positives = 211/491 (42%), Gaps = 70/491 (14%)

Query: 23  EAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAA 82
           +A NLFDE P+  + + S      +    H KS+K                 +GV     
Sbjct: 41  QAHNLFDEKPKPVLQALS------TAKVIHSKSLK-----------------IGV----- 72

Query: 83  GLQNLELARSIHGLMVKFG---LESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFN 139
           GL+ L L   I  L VK G        F  L+   + + N++++ ++++ LF   V  F 
Sbjct: 73  GLKGL-LGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSMYLDHGLFATVVQSFV 131

Query: 140 FFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLM 199
                 + PN  T   V+  C  L        +H    K G          ++DMY+   
Sbjct: 132 CMWNHEVRPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTGFGFRSFCQGGLIDMYAKCR 191

Query: 200 DLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLIS 259
            L  A  +F      D +SWT ++  +V   +  +A+K+F  M++     D + L+ ++ 
Sbjct: 192 YLRDARLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDRMQRVGHAPDQITLVTVV- 250

Query: 260 VNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVS 319
                                         N+ +A+    G L  +R +F QI   ++V+
Sbjct: 251 ------------------------------NAYVAL----GRLADARKLFTQIPNPNVVA 276

Query: 320 WTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIA 379
           W  +ISG+ + G A EA++ F+++++    +  S +L S+L+A   L+ L     +H  A
Sbjct: 277 WNVMISGHAKRGFAEEAISFFLELKKTGLKATRS-SLGSVLSAIASLSMLNYGSMVHAQA 335

Query: 380 FEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETA 439
            + G      V + L++ Y+KC  +D A  VF  +G  R++V WN ++ G+  NG  +  
Sbjct: 336 TKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLG-ERNIVLWNAMLGGFAQNGLAQEV 394

Query: 440 LALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVD 499
           +  +  M   G  PD  T+ SI +AC      N G  +   MI +NK   +      +VD
Sbjct: 395 MEFFSCMKRHGPQPDEFTFTSIFSACASLHYLNFGGQLHTVMI-KNKFASNLFVANALVD 453

Query: 500 LLARAGCLSDA 510
           + A++G L +A
Sbjct: 454 MYAKSGALKEA 464


>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
          Length = 886

 Score =  256 bits (655), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 166/556 (29%), Positives = 289/556 (51%), Gaps = 37/556 (6%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEK-NVVSWSIVIHGYSINGFHEKSMKAFSHMM-LSGLL 68
           L++ YF     + A+ +F  I    ++  W+ ++   + N    + ++ F  ++    L 
Sbjct: 236 LINLYFSCHLFQSAKLVFQTIENPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLK 295

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------L 106
           P++FT   VL A +GL  +   + +H  ++K G   D                      L
Sbjct: 296 PDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKL 355

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           F+ +    + S N +++ +  +   ++A+ LF   + SG  P++VT+ TVI  C  L   
Sbjct: 356 FDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDL 415

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
              + IH   ++ G  LD  V+++++DMY     L+ A ++F +++ K+V+SW  M+   
Sbjct: 416 ERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIA-- 473

Query: 227 VDFEYAGDA---LKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
             +   GD+   +++FR M +  I      L +++   +   +L+ GK +H  ++   ++
Sbjct: 474 -GYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVE 532

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
           +++ +++S+I +Y KCG++ S+ +VF  + + ++VSW  +ISGYV+ G   EAL  F  M
Sbjct: 533 ADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDM 592

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
           R+      D+IT  S+L A  +LA LE   ++H    E+       V   L+  Y+KCG 
Sbjct: 593 RKAGVKP-DAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGA 651

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           VD A  +F ++   RD VSW ++I  YG +G    AL L+ KM ++   PD  T+L+IL+
Sbjct: 652 VDEALHIFNQLP-ERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILS 710

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK---LLEG 520
           AC HAGL ++G   FNQMI E   KP+ EHY C++DLL R G L +A  +  +   + E 
Sbjct: 711 ACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPDIRED 770

Query: 521 MGPNIWRALLSGCVLH 536
           +G  +   L S C LH
Sbjct: 771 VG--LLSTLFSACHLH 784



 Score =  201 bits (512), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 140/447 (31%), Positives = 235/447 (52%), Gaps = 9/447 (2%)

Query: 79  VAAAGLQN-LELARSIHGLMVK---FGLESDLFEGLKNPYLVSC-NAIVAGFINNKLFQQ 133
           + + GLQN + L +S+  L      F     +F+ ++NP  ++  N ++A    N +F +
Sbjct: 221 IVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLDITLWNGLMAACTKNFIFIE 280

Query: 134 AVLLFN-FFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVL 192
            + +F+       L P+A T  +V++ C  LG     +++H   IK G  +DV V +S +
Sbjct: 281 GLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAV 340

Query: 193 DMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTV 252
            MY+     + AI++F EM  +DV SW  ++  +        AL++F EM+ S    D+V
Sbjct: 341 GMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSV 400

Query: 253 ALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQI 312
            L  +IS  A L DL+RGK++H ++V  G   +  +S++++ MY KCG L+ ++ VF QI
Sbjct: 401 TLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQI 460

Query: 313 TEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEIC 372
             K++VSW ++I+GY   G ++  +  F +M +E      + TL SIL A      L++ 
Sbjct: 461 QRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLT-TLSSILMACSRSVNLQLG 519

Query: 373 LQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGV 432
             +HG            V + LI  Y KCGN+  A  VF+ M    +VVSWN +I GY  
Sbjct: 520 KFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMP-KTNVVSWNVMISGYVK 578

Query: 433 NGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQE 492
            G    AL ++  M + G  PD+ T+ S+L AC    +   G  I N +I E+K++ ++ 
Sbjct: 579 VGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFII-ESKLEINEV 637

Query: 493 HYGCVVDLLARAGCLSDASGLAGKLLE 519
             G ++D+ A+ G + +A  +  +L E
Sbjct: 638 VMGALLDMYAKCGAVDEALHIFNQLPE 664



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 106/400 (26%), Positives = 201/400 (50%), Gaps = 12/400 (3%)

Query: 168 LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK-DVISWTRMMGLF 226
           L +LIH   + LGL  ++++  S++++Y       +A  +F+ +E   D+  W  +M   
Sbjct: 213 LGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLDITLWNGLMAAC 272

Query: 227 VDFEYAGDALKIF-REMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
                  + L++F R +    +  D     +++   + LG +  GK +H  V+  G   +
Sbjct: 273 TKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMD 332

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           + + +S + MY+KC   + +  +F+++ E+ + SW  +IS Y Q+G   +AL  F +M+ 
Sbjct: 333 VVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKV 392

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
                 DS+TL +++++   L  LE   ++H     +GF     V + L+  Y KCG ++
Sbjct: 393 SGFKP-DSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLE 451

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
           +A  VFE++   ++VVSWN++I GY + G  ++ + L+ +M E G  P  +T  SIL AC
Sbjct: 452 MAKEVFEQIQ-RKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMAC 510

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI 525
             +     G  I   +I  N+V+        ++DL  + G +  A  +   + +    N+
Sbjct: 511 SRSVNLQLGKFIHGYII-RNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKT---NV 566

Query: 526 --WRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISF 563
             W  ++SG V  VG + +A  + +  +K G +K   I+F
Sbjct: 567 VSWNVMISGYV-KVGSYLEALVIFTDMRKAG-VKPDAITF 604



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 170/335 (50%), Gaps = 23/335 (6%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D + SS L+  Y K G ++ A+ +F++I  KNVVSW+ +I GYS+ G  +  ++ F  M
Sbjct: 432 LDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRM 491

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------- 106
              G+ P   T+  +L+A +   NL+L + IHG +++  +E+D+                
Sbjct: 492 DEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNI 551

Query: 107 ------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                 F+ +    +VS N +++G++    + +A+++F   R +G+ P+A+T  +V+  C
Sbjct: 552 GSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPAC 611

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             L      + IH   I+  L ++  V  ++LDMY+    +D A+ IF ++  +D +SWT
Sbjct: 612 SQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWT 671

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+  +     A +ALK+F +M++S    D V  L ++S  +  G +  G     Q++  
Sbjct: 672 SMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAE 731

Query: 281 -GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE 314
            G +  +   + +I +  + G L  +  +  +  +
Sbjct: 732 YGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPD 766


>gi|224121748|ref|XP_002330643.1| predicted protein [Populus trichocarpa]
 gi|222872247|gb|EEF09378.1| predicted protein [Populus trichocarpa]
          Length = 777

 Score =  256 bits (655), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 164/564 (29%), Positives = 291/564 (51%), Gaps = 34/564 (6%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM-L 64
           Y  S L   + + G    A  +F+++  +N VS + ++ G       E++++ F     L
Sbjct: 187 YVGSALAGGFSRLGSFDYARKIFEQMTARNAVSMNGLMVGLVRQKCGEEAVEVFKETRHL 246

Query: 65  SGLLPNSFTMVGVLVAAAGL--QNLELARSIHGLMVKFGLESD---LFEGLKNPYL---- 115
             +  +S+ ++    A   L  +     R +HG  ++ GL      +  GL N Y     
Sbjct: 247 VDINVDSYVILLSACAEFALLDEGRRKGREVHGYAIRTGLNDAKVAVGNGLINMYAKCGD 306

Query: 116 ----------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                           VS N+++ G   NK F+ AV  +N  R +GL+P+  T+++ +  
Sbjct: 307 IDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFTLISALSS 366

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C +LG   L +  HG  IKLGL +DVSV+N++L +Y+    L    ++F  M  +D +SW
Sbjct: 367 CASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETGHLAECQKVFSWMLERDQVSW 426

Query: 220 TRMMGLFVDF-EYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
             ++G   D      +A+++F EM ++    + V  +NL++  + L   K   Q+HA ++
Sbjct: 427 NTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLSHQIHALIL 486

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK-SLVSWTAIISGYVQNGCAREAL 337
              ++ +  + N+++A Y K G++++   +F++++E+   VSW ++ISGY+ N    +A+
Sbjct: 487 KYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISGYIHNDLLCKAM 546

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
           +  + +  ++   +D  T  ++L+A   +A LE  +++H  A  A       + + L+  
Sbjct: 547 D-LVWLMMQRGQRLDCFTFATVLSACATVATLERGMEVHACAIRACLESDVVIGSALVDM 605

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           YSKCG +D A   F  M  +R++ SWN++I GY  +G+G+ AL L+ +M  +G++PD  T
Sbjct: 606 YSKCGRIDYASRFFNLMP-MRNLYSWNSMISGYARHGYGDNALRLFTRMKLSGQLPDHIT 664

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL 517
           ++ +L+AC H GL ++G   F  M E   + P  EHY C+VDLL RAG L        K+
Sbjct: 665 FVGVLSACSHIGLVDEGFEYFKSMTEVYGLVPRVEHYSCMVDLLGRAGELDKIDNFINKM 724

Query: 518 LEGMGPN--IWRALLSGCVLHVGR 539
              + PN  IWR +L  C    GR
Sbjct: 725 --PIKPNILIWRTVLGACCRGNGR 746



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 147/577 (25%), Positives = 262/577 (45%), Gaps = 54/577 (9%)

Query: 5   PYNSSKLLSNYFKS------GKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKA 58
           PY +   L N   S      G I  A ++FDEI  +N + W+ ++  YS  G      + 
Sbjct: 73  PYANDASLCNVLISMYGKYLGYIDYARSVFDEIEIRNSIYWNSIVSVYSQRGDAASCFEL 132

Query: 59  FSHMMLS----GLLPNSFTMVGVLVAAAG---------------------LQNLELARSI 93
           FS M ++     L PN +T   ++ AA                       L NL +  ++
Sbjct: 133 FSSMQMADSGLSLKPNEYTFGSLITAACSSVDSGLSLLGQILARIKKSGLLANLYVGSAL 192

Query: 94  HGLMVKFG---LESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVP-N 149
            G   + G       +FE +     VS N ++ G +  K  ++AV +F   R   LV  N
Sbjct: 193 AGGFSRLGSFDYARKIFEQMTARNAVSMNGLMVGLVRQKCGEEAVEVFKETR--HLVDIN 250

Query: 150 AVTMLTVIRGCVALG----SRALCELIHGLTIKLGL-ILDVSVNNSVLDMYSCLMDLDAA 204
             + + ++  C         R     +HG  I+ GL    V+V N +++MY+   D+D A
Sbjct: 251 VDSYVILLSACAEFALLDEGRRKGREVHGYAIRTGLNDAKVAVGNGLINMYAKCGDIDHA 310

Query: 205 IQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAIL 264
             +F  M  KD +SW  M+      +   DA+K +  MRK+ ++     L++ +S  A L
Sbjct: 311 RSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFTLISALSSCASL 370

Query: 265 GDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAII 324
           G +  G+Q H + +  GL  ++ +SN+++A+Y++ G L   + VF+ + E+  VSW  +I
Sbjct: 371 GCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETGHLAECQKVFSWMLERDQVSWNTVI 430

Query: 325 SGYVQNGCA-REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG 383
                +G +  EA+  F++M +    S + +T +++L     L+  ++  Q+H +  +  
Sbjct: 431 GALADSGASVSEAIEVFLEMMRAGW-SPNRVTFINLLATVSSLSTSKLSHQIHALILKYN 489

Query: 384 FPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALY 443
                +++N L++ Y K G ++    +F  M   RD VSWN++I GY  N     A+ L 
Sbjct: 490 VKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISGYIHNDLLCKAMDLV 549

Query: 444 HKMTETGEVPDSSTYLSILNACGHAGLTNDGLVI----FNQMIEENKVKPSQEHYGCVVD 499
             M + G+  D  T+ ++L+AC        G+ +        +E + V  S      +VD
Sbjct: 550 WLMMQRGQRLDCFTFATVLSACATVATLERGMEVHACAIRACLESDVVIGSA-----LVD 604

Query: 500 LLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
           + ++ G +  AS     L+       W +++SG   H
Sbjct: 605 MYSKCGRIDYASRFF-NLMPMRNLYSWNSMISGYARH 640



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 141/539 (26%), Positives = 257/539 (47%), Gaps = 41/539 (7%)

Query: 31  IPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAA--AGLQNLE 88
           +P++N V+W+ +I GY+ NG  + +      M+  G LPN F     + A   + L  L+
Sbjct: 1   MPDRNGVTWACLISGYTQNGMPDDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLCGLQ 60

Query: 89  LARSIHGLMVKFGLESD-----------------------LFEGLKNPYLVSCNAIVAGF 125
           L   IHGL++K    +D                       +F+ ++    +  N+IV+ +
Sbjct: 61  LGMQIHGLILKSPYANDASLCNVLISMYGKYLGYIDYARSVFDEIEIRNSIYWNSIVSVY 120

Query: 126 INNKLFQQAVLLFNFFR----GSGLVPNAVTMLTVIR-GCVALGS-RALCELIHGLTIKL 179
                      LF+  +    G  L PN  T  ++I   C ++ S  +L   I     K 
Sbjct: 121 SQRGDAASCFELFSSMQMADSGLSLKPNEYTFGSLITAACSSVDSGLSLLGQILARIKKS 180

Query: 180 GLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIF 239
           GL+ ++ V +++   +S L   D A +IF +M  ++ +S   +M   V  +   +A+++F
Sbjct: 181 GLLANLYVGSALAGGFSRLGSFDYARKIFEQMTARNAVSMNGLMVGLVRQKCGEEAVEVF 240

Query: 240 REMRK-SRIICDT-VALLNLISVNAILGDLKR-GKQLHAQVVLGGL-QSELRLSNSIIAM 295
           +E R    I  D+ V LL+  +  A+L + +R G+++H   +  GL  +++ + N +I M
Sbjct: 241 KETRHLVDINVDSYVILLSACAEFALLDEGRRKGREVHGYAIRTGLNDAKVAVGNGLINM 300

Query: 296 YSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDS-I 354
           Y+KCGD+D +RSVF  + +K  VSW ++I+G  QN C  +A+  +  MR  KT  + S  
Sbjct: 301 YAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMR--KTGLMPSNF 358

Query: 355 TLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM 414
           TL+S L++   L  + +  Q HG   + G     SV N L++ Y++ G++     VF  M
Sbjct: 359 TLISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETGHLAECQKVFSWM 418

Query: 415 GFLRDVVSWNTIIYGYGVNGHG-ETALALYHKMTETGEVPDSSTYLSILNACGHAGLTND 473
              RD VSWNT+I     +G     A+ ++ +M   G  P+  T++++L        +  
Sbjct: 419 -LERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKL 477

Query: 474 GLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSG 532
              I   +++ N VK        ++    ++G + +   +  ++ E      W +++SG
Sbjct: 478 SHQIHALILKYN-VKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISG 535


>gi|356543252|ref|XP_003540076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 934

 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 158/552 (28%), Positives = 276/552 (50%), Gaps = 28/552 (5%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ L+S +     I+EA  +FD++ E++ +SW+ +I     NG  EKS++ FS M  +  
Sbjct: 198 ANSLISMFGNCDSIEEASCVFDDMKERDTISWNSIITASVHNGHCEKSLEYFSQMRYTHA 257

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL--------------------- 106
             +  T+  +L      QNL   R +HG++VK GLES++                     
Sbjct: 258 KTDYITISALLPVCGSAQNLRWGRGLHGMVVKSGLESNVCVCNSLLSMYSQAGKSEDAEF 317

Query: 107 -FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
            F  ++   L+S N+++A  ++N  + +A+ L      +    N VT  T +  C  L +
Sbjct: 318 VFHKMRERDLISWNSMMASHVDNGNYPRALELLIEMLQTRKATNYVTFTTALSACYNLET 377

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
               +++H   I LGL  ++ + N+++ MY     + AA ++ + M  +D ++W  ++G 
Sbjct: 378 ---LKIVHAFVILLGLHHNLIIGNALVTMYGKFGSMAAAQRVCKIMPDRDEVTWNALIGG 434

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDL-KRGKQLHAQVVLGGLQS 284
             D +    A++ F  +R+  +  + + ++NL+S      DL   G  +HA +V+ G + 
Sbjct: 435 HADNKEPNAAIEAFNLLREEGVPVNYITIVNLLSAFLSPDDLLDHGMPIHAHIVVAGFEL 494

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           E  + +S+I MY++CGDL++S  +F+ +  K+  +W AI+S     G   EAL   IKMR
Sbjct: 495 ETFVQSSLITMYAQCGDLNTSNYIFDVLANKNSSTWNAILSANAHYGPGEEALKLIIKMR 554

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
            +    +D  +        G L  L+   QLH +  + GF     V N  +  Y KCG +
Sbjct: 555 NDGI-HLDQFSFSVAHAIIGNLTLLDEGQQLHSLIIKHGFESNDYVLNATMDMYGKCGEI 613

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           D  + +  +    R   SWN +I     +G  + A   +H+M + G  PD  T++S+L+A
Sbjct: 614 DDVFRILPQPR-SRSQRSWNILISALARHGFFQQAREAFHEMLDLGLRPDHVTFVSLLSA 672

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C H GL ++GL  F+ M  +  V    EH  C++DLL RAG L++A     K+       
Sbjct: 673 CSHGGLVDEGLAYFSSMSTKFGVPTGIEHCVCIIDLLGRAGKLTEAENFINKMPVPPTDL 732

Query: 525 IWRALLSGCVLH 536
           +WR+LL+ C +H
Sbjct: 733 VWRSLLAACKIH 744



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 159/569 (27%), Positives = 280/569 (49%), Gaps = 40/569 (7%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTM 74
           Y K G I+ A+++FD++PE+N  SW+ ++ G+   G+++K+M+ F HM+  G+ P+S+  
Sbjct: 2   YSKFGSIEHAQHVFDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHMLEHGVRPSSYVA 61

Query: 75  VGVLVAA--AGLQNLELARSIHGLMVKFGLESDLFEG----------------------L 110
             ++ A   +G    E A  +H  ++K GL  D+F G                      +
Sbjct: 62  ASLVTACDRSGCMT-EGAFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFKEI 120

Query: 111 KNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCE 170
           + P +VS  +++ G+  N   ++ + ++   R  G+  N   M TVIR C  L  + L  
Sbjct: 121 EEPNIVSWTSLMVGYAYNGCVKEVMSVYRRLRRDGVYCNENAMATVIRSCGVLVDKMLGY 180

Query: 171 LIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFE 230
            + G  IK GL   VSV NS++ M+     ++ A  +F +M+ +D ISW  ++   V   
Sbjct: 181 QVLGSVIKSGLDTTVSVANSLISMFGNCDSIEEASCVFDDMKERDTISWNSIITASVHNG 240

Query: 231 YAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSN 290
           +   +L+ F +MR +    D + +  L+ V     +L+ G+ LH  VV  GL+S + + N
Sbjct: 241 HCEKSLEYFSQMRYTHAKTDYITISALLPVCGSAQNLRWGRGLHGMVVKSGLESNVCVCN 300

Query: 291 SIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDS 350
           S+++MYS+ G  + +  VF+++ E+ L+SW ++++ +V NG    AL   I+M Q +  +
Sbjct: 301 SLLSMYSQAGKSEDAEFVFHKMRERDLISWNSMMASHVDNGNYPRALELLIEMLQTRK-A 359

Query: 351 VDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIV 410
            + +T  + L+A   L  L+I   +H      G      + N L++ Y K G++  A  V
Sbjct: 360 TNYVTFTTALSACYNLETLKI---VHAFVILLGLHHNLIIGNALVTMYGKFGSMAAAQRV 416

Query: 411 FEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGL 470
            + M   RD V+WN +I G+  N     A+  ++ + E G VP    Y++I+N    A L
Sbjct: 417 CKIMP-DRDEVTWNALIGGHADNKEPNAAIEAFNLLREEG-VP--VNYITIVNLLS-AFL 471

Query: 471 TNDGLVIFNQMIEENKVKPSQEHYGCV----VDLLARAGCLSDASGLAGKLLEGMGPNIW 526
           + D L+     I  + V    E    V    + + A+ G L + S     +L     + W
Sbjct: 472 SPDDLLDHGMPIHAHIVVAGFELETFVQSSLITMYAQCGDL-NTSNYIFDVLANKNSSTW 530

Query: 527 RALLSGCVLHVGRFQDAEALRSGSQKKGI 555
            A+LS    H G  ++A  L    +  GI
Sbjct: 531 NAILSANA-HYGPGEEALKLIIKMRNDGI 558



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 151/613 (24%), Positives = 282/613 (46%), Gaps = 55/613 (8%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + LL  Y   G + E + +F EI E N+VSW+ ++ GY+ NG  ++ M  +  + 
Sbjct: 93  DVFVGTSLLHFYGTFGWVAEVDMVFKEIEEPNIVSWTSLMVGYAYNGCVKEVMSVYRRLR 152

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
             G+  N   M  V+ +   L +  L   + G ++K GL++                   
Sbjct: 153 RDGVYCNENAMATVIRSCGVLVDKMLGYQVLGSVIKSGLDTTVSVANSLISMFGNCDSIE 212

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +F+ +K    +S N+I+   ++N   ++++  F+  R +    + +T+  ++  C 
Sbjct: 213 EASCVFDDMKERDTISWNSIITASVHNGHCEKSLEYFSQMRYTHAKTDYITISALLPVCG 272

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
           +  +      +HG+ +K GL  +V V NS+L MYS     + A  +F +M  +D+ISW  
Sbjct: 273 SAQNLRWGRGLHGMVVKSGLESNVCVCNSLLSMYSQAGKSEDAEFVFHKMRERDLISWNS 332

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           MM   VD      AL++  EM ++R   + V     +S      +L+  K +HA V+L G
Sbjct: 333 MMASHVDNGNYPRALELLIEMLQTRKATNYVTFTTALSA---CYNLETLKIVHAFVILLG 389

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           L   L + N+++ MY K G + +++ V   + ++  V+W A+I G+  N     A+  F 
Sbjct: 390 LHHNLIIGNALVTMYGKFGSMAAAQRVCKIMPDRDEVTWNALIGGHADNKEPNAAIEAFN 449

Query: 342 KMRQEKTDSVDSITLVSILTA---SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
            +R+E    V+ IT+V++L+A     +L  L+  + +H     AGF     VQ+ LI+ Y
Sbjct: 450 LLREEGV-PVNYITIVNLLSAFLSPDDL--LDHGMPIHAHIVVAGFELETFVQSSLITMY 506

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
           ++CG+++ +  +F+ +   ++  +WN I+      G GE AL L  KM   G   D  ++
Sbjct: 507 AQCGDLNTSNYIFDVLAN-KNSSTWNAILSANAHYGPGEEALKLIIKMRNDGIHLDQFSF 565

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
                  G+  L ++G  + + +I ++  + +       +D+  + G + D   +  +  
Sbjct: 566 SVAHAIIGNLTLLDEGQQL-HSLIIKHGFESNDYVLNATMDMYGKCGEIDDVFRILPQ-P 623

Query: 519 EGMGPNIWRALLSGCVLHVGRFQDAE-------------------ALRSGSQKKGIIKIP 559
                  W  L+S    H G FQ A                    +L S     G++   
Sbjct: 624 RSRSQRSWNILISALARH-GFFQQAREAFHEMLDLGLRPDHVTFVSLLSACSHGGLVD-E 681

Query: 560 GISFLNSTSRDFG 572
           G+++ +S S  FG
Sbjct: 682 GLAYFSSMSTKFG 694



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 77/276 (27%), Positives = 139/276 (50%), Gaps = 3/276 (1%)

Query: 194 MYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVA 253
           MYS    ++ A  +F +M  ++  SW  +M  FV   +   A++ F  M +  +   +  
Sbjct: 1   MYSKFGSIEHAQHVFDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHMLEHGVRPSSYV 60

Query: 254 LLNLISVNAILGDLKRGK-QLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQI 312
             +L++     G +  G  Q+HA V+  GL  ++ +  S++  Y   G +     VF +I
Sbjct: 61  AASLVTACDRSGCMTEGAFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFKEI 120

Query: 313 TEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEIC 372
            E ++VSWT+++ GY  NGC +E ++ + ++R++     +   + +++ + G L    + 
Sbjct: 121 EEPNIVSWTSLMVGYAYNGCVKEVMSVYRRLRRDGV-YCNENAMATVIRSCGVLVDKMLG 179

Query: 373 LQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGV 432
            Q+ G   ++G     SV N LIS +  C +++ A  VF++M   RD +SWN+II     
Sbjct: 180 YQVLGSVIKSGLDTTVSVANSLISMFGNCDSIEEASCVFDDMK-ERDTISWNSIITASVH 238

Query: 433 NGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
           NGH E +L  + +M  T    D  T  ++L  CG A
Sbjct: 239 NGHCEKSLEYFSQMRYTHAKTDYITISALLPVCGSA 274



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 77/180 (42%), Gaps = 22/180 (12%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           ++ +  S L++ Y + G +  +  +FD +  KN  +W+ ++   +  G  E+++K    M
Sbjct: 494 LETFVQSSLITMYAQCGDLNTSNYIFDVLANKNSSTWNAILSANAHYGPGEEALKLIIKM 553

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES------------------ 104
              G+  + F+          L  L+  + +H L++K G ES                  
Sbjct: 554 RNDGIHLDQFSFSVAHAIIGNLTLLDEGQQLHSLIIKHGFESNDYVLNATMDMYGKCGEI 613

Query: 105 -DLFEGLKNPY---LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
            D+F  L  P      S N +++    +  FQQA   F+     GL P+ VT ++++  C
Sbjct: 614 DDVFRILPQPRSRSQRSWNILISALARHGFFQQAREAFHEMLDLGLRPDHVTFVSLLSAC 673


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 163/620 (26%), Positives = 298/620 (48%), Gaps = 63/620 (10%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + L+  Y K+  + +   +FDE+ E+NVVSW+ ++ GYS NG +    + F  M   G+L
Sbjct: 132 TSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWELFCQMQYEGVL 191

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES----------------------DL 106
           PN +T+  V+ A      + +   +H ++VK G E                       D+
Sbjct: 192 PNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDV 251

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           F+ ++    V+ N+++AG++ N    +   +FN  + +G+ P  +T  +VI+ C +L   
Sbjct: 252 FDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLREL 311

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME-CKDVISWTRMMGL 225
           AL +L+    +K G   D  V  +++   S   ++D A+ +F  ME  K+V+SWT M+  
Sbjct: 312 ALVKLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISG 371

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
            +       A+ +F +MR+  +  +      +++V+  +       ++HA+V+    +  
Sbjct: 372 CLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILTVHYPVF----VSEMHAEVIKTNYERS 427

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
             +  +++  Y K G+   +  VF  I  K L++W+A+++GY Q G   EA   F ++ +
Sbjct: 428 SSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIK 487

Query: 346 EKTDSVDSITLVSILTA-SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
           E     +  T  S++ A +   AA E   Q H  A +        V + L++ Y+K GN+
Sbjct: 488 EGIKP-NEFTFSSVINACASPTAAAEQGKQFHAYAIKMRLNNALCVSSALVTMYAKRGNI 546

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           D A+ VF+     RD+VSWN++I GY  +G  + AL ++ +M +     D+ T++ ++ A
Sbjct: 547 DSAHEVFKRQK-ERDLVSWNSMISGYSQHGQAKKALEVFDEMQKRNMDVDAVTFIGVITA 605

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C HAGL   G   FN MI ++ + P+ +HY C++DL +RAG L  A G+  ++    G  
Sbjct: 606 CTHAGLVEKGQKYFNSMINDHHINPTMKHYSCMIDLYSRAGMLEKAMGIINEMPFPPGAT 665

Query: 525 IWRALLSGCVLH---------------------------------VGRFQDAEALRSGSQ 551
           +WR LL    +H                                  G +Q+   +R    
Sbjct: 666 VWRTLLGAARVHRNVELGELAAEKLISLQPEDSAAYVLLSNMYAAAGNWQERTNVRKLMD 725

Query: 552 KKGIIKIPGISFLNSTSRDF 571
           K+ + K PG S++   ++ +
Sbjct: 726 KRKVKKEPGYSWIEVKNKTY 745



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 129/468 (27%), Positives = 231/468 (49%), Gaps = 31/468 (6%)

Query: 24  AENLFDEIPEKNVV--SWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAA 81
           A NLFD+IP +       + ++  YS +   ++++  F  ++ S L P+  T+  V    
Sbjct: 44  AHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNIC 103

Query: 82  AGLQNLELARSIHGLMVKFGLESD----------------------LFEGLKNPYLVSCN 119
           AG  + +L R +H   VKFGL                         +F+ +    +VS  
Sbjct: 104 AGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWT 163

Query: 120 AIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKL 179
           +++AG+  N L+     LF   +  G++PN  T+ TVI   V  G   +   +H + +K 
Sbjct: 164 SLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKH 223

Query: 180 GLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIF 239
           G    + V NS++ +YS L  L  A  +F +ME +D ++W  M+  +V      +  +IF
Sbjct: 224 GFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIF 283

Query: 240 REMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKC 299
            +M+ + +    +   ++I   A L +L   K +  + +  G  ++  +  +++   SKC
Sbjct: 284 NKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALMVALSKC 343

Query: 300 GDLDSSRSVFNQITE-KSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVS 358
            ++D + S+F+ + E K++VSWTA+ISG +QNG   +A+N F +MR+E     +  T  +
Sbjct: 344 KEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKP-NHFTYSA 402

Query: 359 ILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLR 418
           ILT    +   E    +H    +  + R  SV   L+ +Y K GN   A  VFE +   +
Sbjct: 403 ILTVHYPVFVSE----MHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIE-AK 457

Query: 419 DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           D+++W+ ++ GY   G  E A  L+H++ + G  P+  T+ S++NAC 
Sbjct: 458 DLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACA 505



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 116/441 (26%), Positives = 208/441 (47%), Gaps = 16/441 (3%)

Query: 119 NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIK 178
           N ++  +  +K  ++A+ LF     S L P+  T+  V   C       L   +H   +K
Sbjct: 62  NQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNICAGSLDGKLGRQVHCQCVK 121

Query: 179 LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKI 238
            GL+  VSV  S++DMY    +++   ++F EM  ++V+SWT ++  +      G   ++
Sbjct: 122 FGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWEL 181

Query: 239 FREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSK 298
           F +M+   ++ +   +  +I+     G +  G Q+HA VV  G +  + + NS+I++YS+
Sbjct: 182 FCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPVFNSLISLYSR 241

Query: 299 CGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVS 358
            G L  +R VF+++  +  V+W ++I+GYV+NG   E    F KM+         +T  S
Sbjct: 242 LGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPT-HMTFAS 300

Query: 359 ILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLR 418
           ++ +   L  L +   +   A ++GF   + V   L+ + SKC  +D A  +F  M   +
Sbjct: 301 VIKSCASLRELALVKLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALSLFSLMEEGK 360

Query: 419 DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIF 478
           +VVSW  +I G   NG  + A+ L+ +M   G  P+  TY +IL              +F
Sbjct: 361 NVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILTV---------HYPVF 411

Query: 479 NQMIEENKVKPSQEHYGCV----VDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCV 534
              +    +K + E    V    +D   + G   DA  +  +++E      W A+L+G  
Sbjct: 412 VSEMHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVF-EIIEAKDLMAWSAMLAGYA 470

Query: 535 LHVGRFQDAEALRSGSQKKGI 555
              G  ++A  L     K+GI
Sbjct: 471 -QTGETEEAAKLFHQLIKEGI 490



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 2/79 (2%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           SS L++ Y K G I  A  +F    E+++VSW+ +I GYS +G  +K+++ F  M    +
Sbjct: 533 SSALVTMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGYSQHGQAKKALEVFDEMQKRNM 592

Query: 68  LPNSFTMVGVLVAA--AGL 84
             ++ T +GV+ A   AGL
Sbjct: 593 DVDAVTFIGVITACTHAGL 611


>gi|302783925|ref|XP_002973735.1| hypothetical protein SELMODRAFT_99756 [Selaginella moellendorffii]
 gi|300158773|gb|EFJ25395.1| hypothetical protein SELMODRAFT_99756 [Selaginella moellendorffii]
          Length = 836

 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 175/579 (30%), Positives = 299/579 (51%), Gaps = 40/579 (6%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM-MLSGLLP 69
           L++ Y K G ++ A  +F+ +  K+V+SWS +I  Y+ +G H ++++ +  M   + + P
Sbjct: 260 LVNVYAKCGDLEGARKVFNRLERKDVISWSTMISAYNQSGRHSEAIEIYRLMESETSVEP 319

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPYLVSCNAIV-AGFI 126
           N+ T VGV+ A  G  ++     +HG +V  GLE+D+  G  L   Y V C ++  A   
Sbjct: 320 NAVTFVGVIGACTGCGDVIRGIQVHGRLVSLGLETDVAVGSALVQMY-VKCGSLEDAKKA 378

Query: 127 NNKLFQQAVLLFNFF------RGS-----------GLVPNAVTMLTVIRGCVALGSRALC 169
            +++ ++ VL +NF       RGS            + PNAVT   V+  C A+   A  
Sbjct: 379 FDRVEKRDVLCWNFMLSAYSERGSPQQVIEAYEAMDVEPNAVTYTNVLIACSAMEDLAQG 438

Query: 170 ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDF 229
           + +H   +  GL  D+++  ++L +Y     L +A Q+F  M  KDVI W  MM  ++D 
Sbjct: 439 QKVHSRIVSSGLETDMTMETALLSLYIKCRSLKSACQVFEAMGKKDVIPWNFMMVGYIDH 498

Query: 230 EYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLS 289
           +   +AL+++  M ++ +  + V   N +   + + D++ G ++ A +   G ++++   
Sbjct: 499 DCDTEALRLYARMHEAGVEANNVTFANALKACSKIKDIETGSKVEAMITTKGFETDVVTD 558

Query: 290 NSIIAMYSKCGDLDSSRSVF--NQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
            +++ MY+ CGDL++++ VF   +   + +V WTA+I+ Y Q G   EAL  +  M  E+
Sbjct: 559 TALLNMYAACGDLEAAKRVFGSRRGERRDVVFWTAMIASYAQAGRGEEALALYKTMLSEE 618

Query: 348 TDSVDSITLVSILTASGELAAL----EICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
               +S+T  S+L+A   L  +    +I  +L G A E       +VQN L+S Y++CG+
Sbjct: 619 IKP-NSVTYTSVLSACSSLGNILEGRKIHSKLEGKAEELDV----AVQNSLLSMYARCGS 673

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           +  A+  F ++   RDV SW  ++  +  +GH   AL L  +M   G  PD+ T+ S+L+
Sbjct: 674 LRDAWSCFAKI-HNRDVFSWTGMVAAFAHHGHSARALELVREMELCGVSPDAVTFQSVLH 732

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL---AGKLLEG 520
           AC H G    G   F  M  +  V+PS++HY C+VDLLARAG L++A  +    G   E 
Sbjct: 733 ACSHEGSLERGWASFVSMAVDYAVEPSKDHYLCMVDLLARAGRLAEAREVIQFVGLERES 792

Query: 521 MGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIP 559
           MG   W  LL     H       EA +  + + G+   P
Sbjct: 793 MG---WMMLLGASRTHSNLAMGVEAAQCVAPEDGLAMCP 828



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 127/484 (26%), Positives = 244/484 (50%), Gaps = 36/484 (7%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y  + L+  + K G  +++  +FD + +KNV SWS++I  Y+ NG   ++   F  M   
Sbjct: 59  YFRNWLIQLHGKFGNTQKSREVFDGMQQKNVYSWSMMIGAYAQNGHRNEAFLLFERMESE 118

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHG-------------------LMVKFGLESD- 105
           G+ PN+ T + VL A +    L   + +H                    +  K G  +D 
Sbjct: 119 GIRPNAVTCLHVLGACSYQNELPFGKKVHAYISASEFKWDISLQTSLVNMYAKCGSPADA 178

Query: 106 --LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
             +F+ +    +V+ NA+    ++N    Q+  L       G+ PNA T  ++ RG   L
Sbjct: 179 KAVFDSMARKDIVTWNAMAGASVHNG---QSHKLLREMDLQGVKPNATTYASITRGSSTL 235

Query: 164 -GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
            G RA+ + +    +  G +  V V N+++++Y+   DL+ A ++F  +E KDVISW+ M
Sbjct: 236 TGCRAMEQRL----LASGYMSHVPVQNALVNVYAKCGDLEGARKVFNRLERKDVISWSTM 291

Query: 223 MGLFVDFEYAGDALKIFREMR-KSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           +  +       +A++I+R M  ++ +  + V  + +I      GD+ RG Q+H ++V  G
Sbjct: 292 ISAYNQSGRHSEAIEIYRLMESETSVEPNAVTFVGVIGACTGCGDVIRGIQVHGRLVSLG 351

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           L++++ + ++++ MY KCG L+ ++  F+++ ++ ++ W  ++S Y + G  ++ +  + 
Sbjct: 352 LETDVAVGSALVQMYVKCGSLEDAKKAFDRVEKRDVLCWNFMLSAYSERGSPQQVIEAYE 411

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
            M  E     +++T  ++L A   +  L    ++H     +G     +++  L+S Y KC
Sbjct: 412 AMDVEP----NAVTYTNVLIACSAMEDLAQGQKVHSRIVSSGLETDMTMETALLSLYIKC 467

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
            ++  A  VFE MG  +DV+ WN ++ GY  +     AL LY +M E G   ++ T+ + 
Sbjct: 468 RSLKSACQVFEAMG-KKDVIPWNFMMVGYIDHDCDTEALRLYARMHEAGVEANNVTFANA 526

Query: 462 LNAC 465
           L AC
Sbjct: 527 LKAC 530



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 167/330 (50%), Gaps = 12/330 (3%)

Query: 154 LTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC 213
           LT+++ C   G     ++++      G + +V   N ++ ++    +   + ++F  M+ 
Sbjct: 30  LTLLQQCQDSGE---LDVLYARFTGTGYLDNVYFRNWLIQLHGKFGNTQKSREVFDGMQQ 86

Query: 214 KDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQL 273
           K+V SW+ M+G +    +  +A  +F  M    I  + V  L+++   +   +L  GK++
Sbjct: 87  KNVYSWSMMIGAYAQNGHRNEAFLLFERMESEGIRPNAVTCLHVLGACSYQNELPFGKKV 146

Query: 274 HAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA 333
           HA +     + ++ L  S++ MY+KCG    +++VF+ +  K +V+W A+    V NG +
Sbjct: 147 HAYISASEFKWDISLQTSLVNMYAKCGSPADAKAVFDSMARKDIVTWNAMAGASVHNGQS 206

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC 393
            + L + + ++  K ++    T  SI   S  L     C  +      +G+  +  VQN 
Sbjct: 207 HKLLRE-MDLQGVKPNAT---TYASITRGSSTLTG---CRAMEQRLLASGYMSHVPVQNA 259

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM-TETGEV 452
           L++ Y+KCG+++ A  VF  +   +DV+SW+T+I  Y  +G    A+ +Y  M +ET   
Sbjct: 260 LVNVYAKCGDLEGARKVFNRLE-RKDVISWSTMISAYNQSGRHSEAIEIYRLMESETSVE 318

Query: 453 PDSSTYLSILNACGHAGLTNDGLVIFNQMI 482
           P++ T++ ++ AC   G    G+ +  +++
Sbjct: 319 PNAVTFVGVIGACTGCGDVIRGIQVHGRLV 348



 Score = 44.3 bits (103), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 48/86 (55%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D    + LLS Y + G +++A + F +I  ++V SW+ ++  ++ +G   ++++    M
Sbjct: 656 LDVAVQNSLLSMYARCGSLRDAWSCFAKIHNRDVFSWTGMVAAFAHHGHSARALELVREM 715

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLE 88
            L G+ P++ T   VL A +   +LE
Sbjct: 716 ELCGVSPDAVTFQSVLHACSHEGSLE 741


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 174/563 (30%), Positives = 295/563 (52%), Gaps = 31/563 (5%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEI-PEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           +D    + L+S Y K G+ ++A ++F  +   ++++SWS ++  ++ N    +++  F  
Sbjct: 99  LDSVTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVD 158

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG-LESDLFEG--LKNPY---- 114
           M+ +G  PN +       A +  + + +  SI G +VK G L+SD+  G  L + +    
Sbjct: 159 MIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGR 218

Query: 115 --LVSC----------NAIVAGFINNKLFQ-----QAVLLFNFFRGSGLVPNAVTMLTVI 157
             LVS           NA+    +  +L Q     +A+ LF     SG  P+  T+  VI
Sbjct: 219 GDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVI 278

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYS-CLMD--LDAAIQIFREMECK 214
             C  +    L + +H   I+ GL LD  V   +++MY+ C +D  + AA +IF ++   
Sbjct: 279 SACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDH 338

Query: 215 DVISWTRMMGLFVDFE-YAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQL 273
           +V SWT M+  +V    Y  +AL +FR M  + +I +     + +   A L  L+ G+Q+
Sbjct: 339 NVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQV 398

Query: 274 HAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA 333
               V  G  S   ++NS+I+MY++ G +D +R  F+ + EK+L+S+  +I  Y +N  +
Sbjct: 399 FTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNS 458

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC 393
            EAL  F ++ +++     + T  S+L+ +  +  +    Q+H    ++G    +SV N 
Sbjct: 459 EEALELFNEI-EDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNA 517

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           LIS YS+CGN++ A+ VFE+M   R+V+SW +II G+  +G    AL L+HKM E G  P
Sbjct: 518 LISMYSRCGNIESAFQVFEDME-DRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRP 576

Query: 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL 513
           +  TY+++L+AC H GL N+G   F  M  E+ V P  EHY C+VD+L R+G LS+A   
Sbjct: 577 NLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQF 636

Query: 514 AGKLLEGMGPNIWRALLSGCVLH 536
              +       +WR  L  C +H
Sbjct: 637 INSMPYKADALVWRTFLGACRVH 659



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 124/502 (24%), Positives = 247/502 (49%), Gaps = 35/502 (6%)

Query: 19  GKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVL 78
           G +  A  +F+++PE+N V+W+++I      G+  +++  F  M+LSG  P+ FT+ GV+
Sbjct: 219 GDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVI 278

Query: 79  VAAAGLQNLELARSIHGLMVKFGLESD-------------------------LFEGLKNP 113
            A A ++ L L + +H   ++ GL  D                         +F+ + + 
Sbjct: 279 SACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDH 338

Query: 114 YLVSCNAIVAGFINNKLFQQAVLLFNFFRG---SGLVPNAVTMLTVIRGCVALGSRALCE 170
            + S  A++ G++    + +  L  + FRG   + ++PN  T  + ++ C  L +  + E
Sbjct: 339 NVFSWTAMITGYVQKGGYDEEAL--DLFRGMILTHVIPNHFTFSSTLKACANLAALRIGE 396

Query: 171 LIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFE 230
            +    +KLG      V NS++ MY+    +D A + F  +  K++IS+  ++  +    
Sbjct: 397 QVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNL 456

Query: 231 YAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSN 290
            + +AL++F E+    +        +L+S  A +G + +G+Q+HA+V+  GL+    + N
Sbjct: 457 NSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCN 516

Query: 291 SIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDS 350
           ++I+MYS+CG+++S+  VF  + +++++SWT+II+G+ ++G A +AL  F KM +E    
Sbjct: 517 ALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRP 576

Query: 351 VDSITLVSILTASGELAAL-EICLQLHGIAFEAG-FPRYRSVQNCLISSYSKCGNVDLAY 408
            + +T +++L+A   +  + E       +  E G  PR      C++    + G++  A 
Sbjct: 577 -NLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYA-CMVDILGRSGSLSEAI 634

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
                M +  D + W T +    V+G+ E       KM    E  D + Y+ + N     
Sbjct: 635 QFINSMPYKADALVWRTFLGACRVHGNLELGKHAA-KMIIEQEPHDPAAYILLSNLYAST 693

Query: 469 GLTNDGLVIFNQMIEENKVKPS 490
              ++   I   M E+N +K +
Sbjct: 694 SKWDEVSNIRKAMKEKNLIKEA 715



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 113/405 (27%), Positives = 185/405 (45%), Gaps = 18/405 (4%)

Query: 126 INNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDV 185
           INN    +A+         G  P+  T    ++ C+   S  +  L+H    +  L LD 
Sbjct: 42  INNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDS 101

Query: 186 SVNNSVLDMYSCLMDLDAAIQIFREM-ECKDVISWTRMMGLFVDFEYAGDALKIFREMRK 244
              NS++ +YS     + A  IF+ M   +D+ISW+ M+  F +      AL  F +M +
Sbjct: 102 VTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIE 161

Query: 245 SRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG-LQSELRLSNSIIAMYSKC-GDL 302
           +    +           +    +  G  +   VV  G LQS++ +   +I M+ K  GDL
Sbjct: 162 NGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDL 221

Query: 303 DSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTA 362
            S+  VF ++ E++ V+WT +I+  +Q G A EA++ F++M     +  D  TL  +++A
Sbjct: 222 VSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEP-DRFTLSGVISA 280

Query: 363 SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC---GNVDLAYIVFEEMGFLRD 419
              +  L +  QLH  A   G    R V  CLI+ Y+KC   G++  A  +F+++    +
Sbjct: 281 CANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQI-LDHN 339

Query: 420 VVSWNTIIYGY-GVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIF 478
           V SW  +I GY    G+ E AL L+  M  T  +P+  T+ S L AC +      G  +F
Sbjct: 340 VFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVF 399

Query: 479 NQMIEENKVKPSQEHYGCV----VDLLARAGCLSDASGLAGKLLE 519
                 + VK       CV    + + AR+G + DA      L E
Sbjct: 400 T-----HAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFE 439



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 132/289 (45%), Gaps = 24/289 (8%)

Query: 270 GKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQI-TEKSLVSWTAIISGYV 328
           G  +H ++    LQ +    NS+I++YSKCG  + + S+F  + + + L+SW+A++S + 
Sbjct: 85  GTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFA 144

Query: 329 QNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYR 388
            N     AL  F+ M  E     +     +   A      + +   + G   + G+ +  
Sbjct: 145 NNNMGFRALLTFVDM-IENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSD 203

Query: 389 SVQNC-LISSYSKCGNVDL--AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHK 445
               C LI  + K G  DL  A+ VFE+M   R+ V+W  +I      G+   A+ L+ +
Sbjct: 204 VCVGCGLIDMFVK-GRGDLVSAFKVFEKMP-ERNAVTWTLMITRLMQFGYAGEAIDLFLE 261

Query: 446 MTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCV----VDLL 501
           M  +G  PD  T   +++AC      N  L++  Q +    ++       CV    +++ 
Sbjct: 262 MILSGYEPDRFTLSGVISACA-----NMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMY 316

Query: 502 ARAGCLSDASGLAGKLL--EGMGPNI--WRALLSGCVLHVGRFQDAEAL 546
           A+  C  D S  A + +  + +  N+  W A+++G V   G   D EAL
Sbjct: 317 AK--CSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGG--YDEEAL 361


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 170/557 (30%), Positives = 286/557 (51%), Gaps = 33/557 (5%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM--MLS 65
           S+KL++ Y   G I  + + FD I +KN+ SW+ +I  Y   G + ++M   + +  M  
Sbjct: 57  STKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCG 116

Query: 66  G--LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG-----LKNPYLV-- 116
           G  L P+ +T   +L A   L +    + +H  + K G E D+F       L + Y V  
Sbjct: 117 GGHLRPDFYTFPPILKACVSLVD---GKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLD 173

Query: 117 ---------------SCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                          S NA+++GF  N     A+ + N  +G G+  + +T+ +++  C 
Sbjct: 174 VAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCA 233

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
                    LIH   +K GL  DV V+N++++MYS    L  A  +F +ME +D++SW  
Sbjct: 234 QSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNS 293

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++  +        AL+ F+ M+   I  D + +++L S+ + L D +  + +   V+   
Sbjct: 294 IIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRRE 353

Query: 282 -LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
            L  ++ + N+++ MY+K G ++ + +VF+Q+  K  +SW  +++GY QNG A EA++ +
Sbjct: 354 WLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAY 413

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
             M + +    +  T VSI+ A   + AL+  +++H    +        V  CLI  Y K
Sbjct: 414 NMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGK 473

Query: 401 CGNVDLAYIVFEEMGFLRDV-VSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           CG ++ A  +F E+   RD  V WN II   G++G GE AL L+  M       D  T++
Sbjct: 474 CGRLEDAMSLFYEIP--RDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFV 531

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519
           S+L+AC H+GL ++G   F+ M +E  +KPS +HYGC+VDLL RAG L  A  L   +  
Sbjct: 532 SLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPI 591

Query: 520 GMGPNIWRALLSGCVLH 536
               +IW ALLS C ++
Sbjct: 592 QPDASIWGALLSACKIY 608



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 137/470 (29%), Positives = 238/470 (50%), Gaps = 21/470 (4%)

Query: 85  QNLELARSIHGLMVKFG---LESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAV----LL 137
           QN+ L+  +  L V  G   L    F+ +    + S N+I++ ++    + +A+     L
Sbjct: 52  QNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQL 111

Query: 138 FNFFRGSGLVPNAVTMLTVIRGCVAL--GSRALCELIHGLTIKLGLILDVSVNNSVLDMY 195
           F+   G  L P+  T   +++ CV+L  G +     +H    K+G   DV V  S++ +Y
Sbjct: 112 FSMCGGGHLRPDFYTFPPILKACVSLVDGKK-----VHCCVFKMGFEDDVFVAASLVHLY 166

Query: 196 SCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALL 255
           S    LD A ++F +M  KDV SW  M+  F     A  AL +   M+   +  DT+ + 
Sbjct: 167 SRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVA 226

Query: 256 NLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK 315
           +++ V A   D+  G  +H  V+  GL S++ +SN++I MYSK G L  ++ VF+Q+  +
Sbjct: 227 SILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVR 286

Query: 316 SLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQL 375
            LVSW +II+ Y QN     AL +F K  Q      D +T+VS+ +   +L+   I   +
Sbjct: 287 DLVSWNSIIAAYEQNNDPSTAL-RFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSI 345

Query: 376 HGIAFEAGF-PRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNG 434
            G      +  +   + N L++ Y+K G ++ A+ VF+++   +D +SWNT++ GY  NG
Sbjct: 346 LGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLP-RKDTISWNTLVTGYTQNG 404

Query: 435 HGETALALYHKMTETGE-VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEH 493
               A+  Y+ M E  + +P+  T++SI+ A  H G    G+ I  ++I +N +      
Sbjct: 405 LASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLI-KNSLYLDVFV 463

Query: 494 YGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDA 543
             C++DL  + G L DA  L  ++        W A+++   +H GR ++A
Sbjct: 464 ATCLIDLYGKCGRLEDAMSLFYEIPRDTSVP-WNAIIASLGIH-GRGEEA 511



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 115/461 (24%), Positives = 219/461 (47%), Gaps = 30/461 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + ++ L+  Y + G +  A  +F ++P K+V SW+ +I G+  NG    ++   + M 
Sbjct: 155 DVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMK 214

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY------- 114
             G+  ++ T+  +L   A   ++     IH  ++K GL+SD+F    L N Y       
Sbjct: 215 GEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQ 274

Query: 115 -------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                        LVS N+I+A +  N     A+  F   +  G+ P+ +T++++     
Sbjct: 275 DAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFS 334

Query: 162 ALGSRALCELIHGLTIKLG-LILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
            L  + +   I G  I+   L  DV + N++++MY+ L  ++ A  +F ++  KD ISW 
Sbjct: 335 QLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWN 394

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSR-IICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
            ++  +     A +A+  +  M + R  I +    +++I   + +G L++G ++HA+++ 
Sbjct: 395 TLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIK 454

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
             L  ++ ++  +I +Y KCG L+ + S+F +I   + V W AII+    +G   EAL  
Sbjct: 455 NSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQL 514

Query: 340 FIKMRQEKTDSVDSITLVSILTA---SGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
           F  M  E+  + D IT VS+L+A   SG +   + C  +  +  E G         C++ 
Sbjct: 515 FKDMLAERVKA-DHITFVSLLSACSHSGLVDEGQKCFDI--MQKEYGIKPSLKHYGCMVD 571

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGE 437
              + G ++ AY +   M    D   W  ++    + G+ E
Sbjct: 572 LLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAE 612



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 78/232 (33%), Positives = 118/232 (50%), Gaps = 15/232 (6%)

Query: 250 DTVALLN-LISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSV 308
           D  AL N  ++VNA        K+LHA +++ G    + LS  +I +Y   GD+  SRS 
Sbjct: 24  DFNALFNSCVNVNAT-------KKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRST 76

Query: 309 FNQITEKSLVSWTAIISGYVQNGCAREAL---NQFIKMRQEKTDSVDSITLVSILTASGE 365
           F+ I +K++ SW +IIS YV+ G   EA+   NQ   M        D  T   IL A   
Sbjct: 77  FDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVS 136

Query: 366 LAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNT 425
           L   +   ++H   F+ GF     V   L+  YS+ G +D+A+ VF +M  ++DV SWN 
Sbjct: 137 LVDGK---KVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMP-VKDVGSWNA 192

Query: 426 IIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVI 477
           +I G+  NG+   AL + ++M   G   D+ T  SIL  C  +    +G++I
Sbjct: 193 MISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLI 244



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 45/80 (56%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D + ++ L+  Y K G++++A +LF EIP    V W+ +I    I+G  E++++ F  M
Sbjct: 459 LDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDM 518

Query: 63  MLSGLLPNSFTMVGVLVAAA 82
           +   +  +  T V +L A +
Sbjct: 519 LAERVKADHITFVSLLSACS 538


>gi|242062166|ref|XP_002452372.1| hypothetical protein SORBIDRAFT_04g024590 [Sorghum bicolor]
 gi|241932203|gb|EES05348.1| hypothetical protein SORBIDRAFT_04g024590 [Sorghum bicolor]
          Length = 691

 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 173/562 (30%), Positives = 278/562 (49%), Gaps = 33/562 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIP-EKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           D + ++ L++ Y   G + EA+ +FDE   E+N VSW+ +I  Y  N     ++  F  M
Sbjct: 134 DVFVTNALVAMYGGFGMVDEAKRIFDEPGGERNAVSWNGMISAYVKNDRCRDAVGVFREM 193

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--------------- 107
           + SG  PN F    V+ A  G ++ E  R +HG++V+ G + D+F               
Sbjct: 194 VWSGERPNEFGFSCVVNACTGSRDWETGRQVHGMVVRTGYDKDVFTANALVDMYSKLGDI 253

Query: 108 -------EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                  E +    +VS NA++AG + +    +A+ L    +  G+VPN  T+ +V++ C
Sbjct: 254 EMAAVVFEKIPAADVVSWNALIAGCVTHGHDHRALELLLQMKPLGVVPNVFTLSSVLKAC 313

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
              G+  L   IHG  IK     D  V   ++DMY+    LD A ++F  M  +D+I W 
Sbjct: 314 AGAGAFNLGRQIHGFMIKADADSDEFVAVGLVDMYAKDGFLDDARKVFDFMPRRDLILWN 373

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDT--VALLNLISVNAILGDLKRGKQLHAQVV 278
            ++         G+ L +F  MRK  +  D     L  ++   A L  +   KQ+HA   
Sbjct: 374 ALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLAAVLKSTASLEAICHTKQVHALAE 433

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
             GL S+  + N +I  Y KCG LD +  VF +     ++S T++++   Q     +A+ 
Sbjct: 434 KIGLLSDSHVVNGLIDSYWKCGRLDYAIKVFEESCSDDIISSTSMMTALSQCDHGEDAIK 493

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
            F++M ++  +  DS  L S+L A   L+A E   Q+H    +  F       N L+ +Y
Sbjct: 494 LFVQMLRKGLEP-DSFVLSSLLNACASLSAYEQGKQVHAHLIKRQFTSDVFAGNALVYTY 552

Query: 399 SKCGNV---DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
           +KCG++   D+A+    E G    VVSW+ +I G   +GHG+ AL L+H+M + G  P++
Sbjct: 553 AKCGSIEDADMAFSGLPEKG----VVSWSAMIGGLAQHGHGKRALELFHRMLDEGVAPNN 608

Query: 456 STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAG 515
            T  S+L+AC HAGL +D    F  M E   +  ++EHY C++D+L RAG L DA  L  
Sbjct: 609 ITLTSVLSACNHAGLVDDAKKYFESMKEAFGIDRTEEHYACMIDILGRAGKLKDAMELVN 668

Query: 516 KLLEGMGPNIWRALLSGCVLHV 537
            +       +W ALL    L++
Sbjct: 669 NMPFQANAAVWGALLGASRLNL 690



 Score =  208 bits (529), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 158/556 (28%), Positives = 256/556 (46%), Gaps = 36/556 (6%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ LLS Y +      A  +FDEIP+   VSWS ++  YS NG    ++ AF  M   G+
Sbjct: 40  SNHLLSFYSRCRLPSAARAVFDEIPDPCHVSWSSLVTAYSNNGMPRDALWAFRSMRGRGV 99

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF-------------------- 107
             N + +  VL  A    ++     +H L V   L  D+F                    
Sbjct: 100 PCNEYALPIVLKCA---PDVRFGAQVHALAVATRLIQDVFVTNALVAMYGGFGMVDEAKR 156

Query: 108 -----EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA 162
                 G +N   VS N +++ ++ N   + AV +F     SG  PN      V+  C  
Sbjct: 157 IFDEPGGERNA--VSWNGMISAYVKNDRCRDAVGVFREMVWSGERPNEFGFSCVVNACTG 214

Query: 163 LGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
                    +HG+ ++ G   DV   N+++DMYS L D++ A  +F ++   DV+SW  +
Sbjct: 215 SRDWETGRQVHGMVVRTGYDKDVFTANALVDMYSKLGDIEMAAVVFEKIPAADVVSWNAL 274

Query: 223 MGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL 282
           +   V   +   AL++  +M+   ++ +   L +++   A  G    G+Q+H  ++    
Sbjct: 275 IAGCVTHGHDHRALELLLQMKPLGVVPNVFTLSSVLKACAGAGAFNLGRQIHGFMIKADA 334

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
            S+  ++  ++ MY+K G LD +R VF+ +  + L+ W A+ISG   +G   E L+ F +
Sbjct: 335 DSDEFVAVGLVDMYAKDGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHR 394

Query: 343 MRQEKTD-SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           MR+E  D  V+  TL ++L ++  L A+    Q+H +A + G      V N LI SY KC
Sbjct: 395 MRKEGLDLDVNRTTLAAVLKSTASLEAICHTKQVHALAEKIGLLSDSHVVNGLIDSYWKC 454

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G +D A  VFEE     D++S  +++       HGE A+ L+ +M   G  PDS    S+
Sbjct: 455 GRLDYAIKVFEE-SCSDDIISSTSMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSL 513

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYG-CVVDLLARAGCLSDASGLAGKLLEG 520
           LNAC        G  +   +I+      S    G  +V   A+ G + DA  +A   L  
Sbjct: 514 LNACASLSAYEQGKQVHAHLIKRQFT--SDVFAGNALVYTYAKCGSIEDAD-MAFSGLPE 570

Query: 521 MGPNIWRALLSGCVLH 536
            G   W A++ G   H
Sbjct: 571 KGVVSWSAMIGGLAQH 586



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 122/390 (31%), Positives = 198/390 (50%), Gaps = 21/390 (5%)

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           +H   +K GL+   S +N +L  YS      AA  +F E+     +SW+ ++  + +   
Sbjct: 26  LHSHLLKSGLL--ASYSNHLLSFYSRCRLPSAARAVFDEIPDPCHVSWSSLVTAYSNNGM 83

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
             DAL  FR MR   + C+  AL  ++       D++ G Q+HA  V   L  ++ ++N+
Sbjct: 84  PRDALWAFRSMRGRGVPCNEYALPIVLKCAP---DVRFGAQVHALAVATRLIQDVFVTNA 140

Query: 292 IIAMYSKCGDLDSSRSVFNQI-TEKSLVSWTAIISGYVQNGCAREALNQFIKM--RQEKT 348
           ++AMY   G +D ++ +F++   E++ VSW  +IS YV+N   R+A+  F +M    E+ 
Sbjct: 141 LVAMYGGFGMVDEAKRIFDEPGGERNAVSWNGMISAYVKNDRCRDAVGVFREMVWSGERP 200

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
           +      +V+  T S +    E   Q+HG+    G+ +     N L+  YSK G++++A 
Sbjct: 201 NEFGFSCVVNACTGSRD---WETGRQVHGMVVRTGYDKDVFTANALVDMYSKLGDIEMAA 257

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
           +VFE++    DVVSWN +I G   +GH   AL L  +M   G VP+  T  S+L AC  A
Sbjct: 258 VVFEKIP-AADVVSWNALIAGCVTHGHDHRALELLLQMKPLGVVPNVFTLSSVLKACAGA 316

Query: 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN---I 525
           G  N G  I   MI+ +         G +VD+ A+ G L DA     K+ + M      +
Sbjct: 317 GAFNLGRQIHGFMIKADADSDEFVAVG-LVDMYAKDGFLDDAR----KVFDFMPRRDLIL 371

Query: 526 WRALLSGCVLHVGRFQDAEALRSGSQKKGI 555
           W AL+SGC  H GR  +  +L    +K+G+
Sbjct: 372 WNALISGCS-HDGRHGEVLSLFHRMRKEGL 400


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 170/557 (30%), Positives = 286/557 (51%), Gaps = 33/557 (5%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM--MLS 65
           S+KL++ Y   G I  + + FD I +KN+ SW+ +I  Y   G + ++M   + +  M  
Sbjct: 57  STKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCG 116

Query: 66  G--LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG-----LKNPYLV-- 116
           G  L P+ +T   +L A   L +    + +H  + K G E D+F       L + Y V  
Sbjct: 117 GGHLRPDFYTFPPILKACVSLVD---GKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLD 173

Query: 117 ---------------SCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                          S NA+++GF  N     A+ + N  +G G+  + +T+ +++  C 
Sbjct: 174 VAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCA 233

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
                    LIH   +K GL  DV V+N++++MYS    L  A  +F +ME +D++SW  
Sbjct: 234 QSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNS 293

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++  +        AL+ F+ M+   I  D + +++L S+ + L D +  + +   V+   
Sbjct: 294 IIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRRE 353

Query: 282 -LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
            L  ++ + N+++ MY+K G ++ + +VF+Q+  K  +SW  +++GY QNG A EA++ +
Sbjct: 354 WLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAY 413

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
             M + +    +  T VSI+ A   + AL+  +++H    +        V  CLI  Y K
Sbjct: 414 NMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGK 473

Query: 401 CGNVDLAYIVFEEMGFLRDV-VSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           CG ++ A  +F E+   RD  V WN II   G++G GE AL L+  M       D  T++
Sbjct: 474 CGRLEDAMSLFYEIP--RDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFV 531

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519
           S+L+AC H+GL ++G   F+ M +E  +KPS +HYGC+VDLL RAG L  A  L   +  
Sbjct: 532 SLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPI 591

Query: 520 GMGPNIWRALLSGCVLH 536
               +IW ALLS C ++
Sbjct: 592 QPDASIWGALLSACKIY 608



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 137/470 (29%), Positives = 238/470 (50%), Gaps = 21/470 (4%)

Query: 85  QNLELARSIHGLMVKFG---LESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAV----LL 137
           QN+ L+  +  L V  G   L    F+ +    + S N+I++ ++    + +A+     L
Sbjct: 52  QNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQL 111

Query: 138 FNFFRGSGLVPNAVTMLTVIRGCVAL--GSRALCELIHGLTIKLGLILDVSVNNSVLDMY 195
           F+   G  L P+  T   +++ CV+L  G +     +H    K+G   DV V  S++ +Y
Sbjct: 112 FSMCGGGHLRPDFYTFPPILKACVSLVDGKK-----VHCCVFKMGFEDDVFVAASLVHLY 166

Query: 196 SCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALL 255
           S    LD A ++F +M  KDV SW  M+  F     A  AL +   M+   +  DT+ + 
Sbjct: 167 SRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVA 226

Query: 256 NLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK 315
           +++ V A   D+  G  +H  V+  GL S++ +SN++I MYSK G L  ++ VF+Q+  +
Sbjct: 227 SILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVR 286

Query: 316 SLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQL 375
            LVSW +II+ Y QN     AL +F K  Q      D +T+VS+ +   +L+   I   +
Sbjct: 287 DLVSWNSIIAAYEQNNDPSTAL-RFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSI 345

Query: 376 HGIAFEAGF-PRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNG 434
            G      +  +   + N L++ Y+K G ++ A+ VF+++   +D +SWNT++ GY  NG
Sbjct: 346 LGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLP-RKDTISWNTLVTGYTQNG 404

Query: 435 HGETALALYHKMTETGE-VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEH 493
               A+  Y+ M E  + +P+  T++SI+ A  H G    G+ I  ++I +N +      
Sbjct: 405 LASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLI-KNSLYLDVFV 463

Query: 494 YGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDA 543
             C++DL  + G L DA  L  ++        W A+++   +H GR ++A
Sbjct: 464 ATCLIDLYGKCGRLEDAMSLFYEIPRDTSVP-WNAIIASLGIH-GRGEEA 511



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 115/461 (24%), Positives = 219/461 (47%), Gaps = 30/461 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + ++ L+  Y + G +  A  +F ++P K+V SW+ +I G+  NG    ++   + M 
Sbjct: 155 DVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMK 214

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY------- 114
             G+  ++ T+  +L   A   ++     IH  ++K GL+SD+F    L N Y       
Sbjct: 215 GEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQ 274

Query: 115 -------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                        LVS N+I+A +  N     A+  F   +  G+ P+ +T++++     
Sbjct: 275 DAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFS 334

Query: 162 ALGSRALCELIHGLTIKLG-LILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
            L  + +   I G  I+   L  DV + N++++MY+ L  ++ A  +F ++  KD ISW 
Sbjct: 335 QLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWN 394

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSR-IICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
            ++  +     A +A+  +  M + R  I +    +++I   + +G L++G ++HA+++ 
Sbjct: 395 TLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIK 454

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
             L  ++ ++  +I +Y KCG L+ + S+F +I   + V W AII+    +G   EAL  
Sbjct: 455 NSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQL 514

Query: 340 FIKMRQEKTDSVDSITLVSILTA---SGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
           F  M  E+  + D IT VS+L+A   SG +   + C  +  +  E G         C++ 
Sbjct: 515 FKDMLAERVKA-DHITFVSLLSACSHSGLVDEGQKCFDI--MQKEYGIKPSLKHYGCMVD 571

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGE 437
              + G ++ AY +   M    D   W  ++    + G+ E
Sbjct: 572 LLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAE 612



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 78/232 (33%), Positives = 118/232 (50%), Gaps = 15/232 (6%)

Query: 250 DTVALLN-LISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSV 308
           D  AL N  ++VNA        K+LHA +++ G    + LS  +I +Y   GD+  SRS 
Sbjct: 24  DFNALFNSCVNVNAT-------KKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRST 76

Query: 309 FNQITEKSLVSWTAIISGYVQNGCAREAL---NQFIKMRQEKTDSVDSITLVSILTASGE 365
           F+ I +K++ SW +IIS YV+ G   EA+   NQ   M        D  T   IL A   
Sbjct: 77  FDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVS 136

Query: 366 LAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNT 425
           L   +   ++H   F+ GF     V   L+  YS+ G +D+A+ VF +M  ++DV SWN 
Sbjct: 137 LVDGK---KVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMP-VKDVGSWNA 192

Query: 426 IIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVI 477
           +I G+  NG+   AL + ++M   G   D+ T  SIL  C  +    +G++I
Sbjct: 193 MISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLI 244



 Score = 45.1 bits (105), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 45/80 (56%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D + ++ L+  Y K G++++A +LF EIP    V W+ +I    I+G  E++++ F  M
Sbjct: 459 LDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDM 518

Query: 63  MLSGLLPNSFTMVGVLVAAA 82
           +   +  +  T V +L A +
Sbjct: 519 LAERVKADHITFVSLLSACS 538


>gi|302766259|ref|XP_002966550.1| hypothetical protein SELMODRAFT_399 [Selaginella moellendorffii]
 gi|300165970|gb|EFJ32577.1| hypothetical protein SELMODRAFT_399 [Selaginella moellendorffii]
          Length = 732

 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 166/559 (29%), Positives = 277/559 (49%), Gaps = 31/559 (5%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D    + L+  Y K+G + EA+ +  E+P+++V+SW+I+I GY+ +G  ++ ++    M
Sbjct: 149 LDTSLGNALVDMYCKTGDVDEADLVLREMPKRDVISWNIMISGYAQSGDCKEGLRCLWRM 208

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------LF 107
              GL P   T   +L A +  ++L   +SIH  +V  GL+ D                 
Sbjct: 209 QQDGLSPTKVTYATLLNACSSGEDLGEGKSIHRSVVDMGLDRDEVVKSFLLGMYGKCGSL 268

Query: 108 EGLKNPY-------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
           E +K           ++ N I+  +       QA+  F   +  G+  +AVT + ++  C
Sbjct: 269 EDVKRSSCEVHERNTIAWNTIIGAYARYSDHFQALRSFQQMQLQGVKADAVTFVLMLGTC 328

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
            +    A   L+H    +LG    + V+NS+  MY+    LDAA ++F  M  ++ +SW 
Sbjct: 329 SSPAHLAQGILLHDWISQLGF-ESIIVHNSLTAMYAKCGSLDAARKMFEGMPSRNSVSWN 387

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++   +      DA K F+ M+      D V  ++++       + K G  +H  VV  
Sbjct: 388 SLISAAIQHGCYADAHKFFQRMKLEGSRPDEVTCISMLDACTKQANAKEGSSIHQMVVES 447

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           G      ++N++I MY+K GD +++R+VF+ + E++ VSW  I++ YV+ G  R+A+  F
Sbjct: 448 GFDKRTGVANALIFMYAKLGDHEAARNVFDAMAERNTVSWNTILAAYVEKGLNRDAVEMF 507

Query: 341 IKMRQEKTDSVDSITLVSILTA-SGELAALEICLQLHGIAFEAGFP-RYRSV-QNCLISS 397
            KM   +    D +T V+ L A SG    L     +HG   + GF  R  +V    L++ 
Sbjct: 508 WKMDVAR----DKVTYVAALDACSGLAGGLAHGKLIHGYMLDHGFSNRLDTVAATALVNM 563

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           Y KCG++  A  +F+EM   RDVV+W ++I  Y  +   E AL L   M + G   D   
Sbjct: 564 YGKCGSLQEARKIFDEM-LHRDVVTWTSLIVAYAQHSEIEQALKLVKIMEQDGVKVDDVV 622

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL 517
           +LSIL+ C H+GL  +G   F  MI++  + P  EHY C++D+L RAG L  A  L  +L
Sbjct: 623 FLSILSGCDHSGLLEEGCKYFVSMIDDYGISPRLEHYNCIIDVLGRAGHLDLAEKLVDRL 682

Query: 518 LEGMGPNIWRALLSGCVLH 536
                  +W  LL+ C +H
Sbjct: 683 PSRSDSKVWMTLLAACRMH 701



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 144/505 (28%), Positives = 247/505 (48%), Gaps = 34/505 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSING-FHEKSMKAFSHM 62
           D Y ++ L++ Y K    ++A  LF  +   NVVSW+ VI  ++  G    +S+  F  M
Sbjct: 52  DIYAANALINMYGKCRSPEDAFQLFSRMESPNVVSWTSVIGNFAQYGHLGRESVLLFRKM 111

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG--LESDLFEGLKNPY------ 114
            L G+ PN  TMV VL A     NL   R +HG +++ G  L++ L   L + Y      
Sbjct: 112 ELEGIRPNLITMVAVLRAC----NLTDGRQVHGYVLEAGMSLDTSLGNALVDMYCKTGDV 167

Query: 115 --------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                         ++S N +++G+  +   ++ +      +  GL P  VT  T++  C
Sbjct: 168 DEADLVLREMPKRDVISWNIMISGYAQSGDCKEGLRCLWRMQQDGLSPTKVTYATLLNAC 227

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
            +       + IH   + +GL  D  V + +L MY     L+   +   E+  ++ I+W 
Sbjct: 228 SSGEDLGEGKSIHRSVVDMGLDRDEVVKSFLLGMYGKCGSLEDVKRSSCEVHERNTIAWN 287

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++G +  +     AL+ F++M+   +  D V  + ++   +    L +G  LH  +   
Sbjct: 288 TIIGAYARYSDHFQALRSFQQMQLQGVKADAVTFVLMLGTCSSPAHLAQGILLHDWISQL 347

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           G +S + + NS+ AMY+KCG LD++R +F  +  ++ VSW ++IS  +Q+GC  +A   F
Sbjct: 348 GFES-IIVHNSLTAMYAKCGSLDAARKMFEGMPSRNSVSWNSLISAAIQHGCYADAHKFF 406

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            +M+ E +   D +T +S+L A  + A  +    +H +  E+GF +   V N LI  Y+K
Sbjct: 407 QRMKLEGSRP-DEVTCISMLDACTKQANAKEGSSIHQMVVESGFDKRTGVANALIFMYAK 465

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
            G+ + A  VF+ M   R+ VSWNTI+  Y   G    A+ ++ KM       D  TY++
Sbjct: 466 LGDHEAARNVFDAMA-ERNTVSWNTILAAYVEKGLNRDAVEMFWKMDVA---RDKVTYVA 521

Query: 461 ILNAC-GHAGLTNDGLVIFNQMIEE 484
            L+AC G AG    G +I   M++ 
Sbjct: 522 ALDACSGLAGGLAHGKLIHGYMLDH 546



 Score =  187 bits (476), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 128/453 (28%), Positives = 217/453 (47%), Gaps = 30/453 (6%)

Query: 54  KSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-------- 105
           ++++ +  M L G+ P+S T V  L A      L+  R +H  + + GLE+D        
Sbjct: 1   QALELYKRMQLEGVRPDSVTFVTCLRACTVEGALDDGRKVHAYIRESGLETDIYAANALI 60

Query: 106 --------------LFEGLKNPYLVSCNAIVAGFIN-NKLFQQAVLLFNFFRGSGLVPNA 150
                         LF  +++P +VS  +++  F     L +++VLLF      G+ PN 
Sbjct: 61  NMYGKCRSPEDAFQLFSRMESPNVVSWTSVIGNFAQYGHLGRESVLLFRKMELEGIRPNL 120

Query: 151 VTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFRE 210
           +TM+ V+R C     R     +HG  ++ G+ LD S+ N+++DMY    D+D A  + RE
Sbjct: 121 ITMVAVLRACNLTDGRQ----VHGYVLEAGMSLDTSLGNALVDMYCKTGDVDEADLVLRE 176

Query: 211 MECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG 270
           M  +DVISW  M+  +       + L+    M++  +    V    L++  +   DL  G
Sbjct: 177 MPKRDVISWNIMISGYAQSGDCKEGLRCLWRMQQDGLSPTKVTYATLLNACSSGEDLGEG 236

Query: 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
           K +H  VV  GL  +  + + ++ MY KCG L+  +    ++ E++ ++W  II  Y + 
Sbjct: 237 KSIHRSVVDMGLDRDEVVKSFLLGMYGKCGSLEDVKRSSCEVHERNTIAWNTIIGAYARY 296

Query: 331 GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV 390
               +AL  F +M+ +   + D++T V +L      A L   + LH    + GF     V
Sbjct: 297 SDHFQALRSFQQMQLQGVKA-DAVTFVLMLGTCSSPAHLAQGILLHDWISQLGFESI-IV 354

Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
            N L + Y+KCG++D A  +FE M   R+ VSWN++I     +G    A   + +M   G
Sbjct: 355 HNSLTAMYAKCGSLDAARKMFEGMPS-RNSVSWNSLISAAIQHGCYADAHKFFQRMKLEG 413

Query: 451 EVPDSSTYLSILNACGHAGLTNDGLVIFNQMIE 483
             PD  T +S+L+AC       +G  I   ++E
Sbjct: 414 SRPDEVTCISMLDACTKQANAKEGSSIHQMVVE 446



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 111/468 (23%), Positives = 219/468 (46%), Gaps = 27/468 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D    S LL  Y K G +++ +    E+ E+N ++W+ +I  Y+    H +++++F  M 
Sbjct: 251 DEVVKSFLLGMYGKCGSLEDVKRSSCEVHERNTIAWNTIIGAYARYSDHFQALRSFQQMQ 310

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES------------------- 104
           L G+  ++ T V +L   +   +L     +H  + + G ES                   
Sbjct: 311 LQGVKADAVTFVLMLGTCSSPAHLAQGILLHDWISQLGFESIIVHNSLTAMYAKCGSLDA 370

Query: 105 --DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA 162
              +FEG+ +   VS N++++  I +  +  A   F   +  G  P+ VT ++++  C  
Sbjct: 371 ARKMFEGMPSRNSVSWNSLISAAIQHGCYADAHKFFQRMKLEGSRPDEVTCISMLDACTK 430

Query: 163 LGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
             +      IH + ++ G      V N+++ MY+ L D +AA  +F  M  ++ +SW  +
Sbjct: 431 QANAKEGSSIHQMVVESGFDKRTGVANALIFMYAKLGDHEAARNVFDAMAERNTVSWNTI 490

Query: 223 MGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL 282
           +  +V+     DA+++F +M  +R     VA L+  S   + G L  GK +H  ++  G 
Sbjct: 491 LAAYVEKGLNRDAVEMFWKMDVARDKVTYVAALDACS--GLAGGLAHGKLIHGYMLDHGF 548

Query: 283 QSELRL--SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
            + L    + +++ MY KCG L  +R +F+++  + +V+WT++I  Y Q+    +AL + 
Sbjct: 549 SNRLDTVAATALVNMYGKCGSLQEARKIFDEMLHRDVVTWTSLIVAYAQHSEIEQAL-KL 607

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEI-CLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           +K+ ++    VD +  +SIL+       LE  C     +  + G        NC+I    
Sbjct: 608 VKIMEQDGVKVDDVVFLSILSGCDHSGLLEEGCKYFVSMIDDYGISPRLEHYNCIIDVLG 667

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMT 447
           + G++DLA  + + +    D   W T++    ++G+ E       ++T
Sbjct: 668 RAGHLDLAEKLVDRLPSRSDSKVWMTLLAACRMHGNPERGKRAARRIT 715


>gi|326487167|dbj|BAJ89568.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 691

 Score =  256 bits (654), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 180/595 (30%), Positives = 290/595 (48%), Gaps = 44/595 (7%)

Query: 10  KLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLP 69
           K L    K+G++ +A +LFD +P KNVV+W+  + G + NG  E + + F+ M+ SG+  
Sbjct: 34  KRLDGLMKAGRVADALDLFDRMPRKNVVAWTSAVSGLTRNGRPEAAGEMFADMVESGVAL 93

Query: 70  NSF--TMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG------------------ 109
           N F         AAAG   L     +H L V+ G   D + G                  
Sbjct: 94  NDFACNAALAACAAAGPGALRTGEQVHSLAVRAGFVGDAWVGSCLVELYARCGSTRAAEA 153

Query: 110 ----LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
               +++P +V+  ++V+    +  F  A        G G++PN  T+ +++  C  L  
Sbjct: 154 VLARMESPDVVAYTSLVSALCRSGEFGMAAEALGQMMGHGVMPNEHTVTSILAACCPL-- 211

Query: 166 RALCELIHGLTIK-LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
             L   IHG  IK +G    V  +++++D YS   + D A  +F  ++CK+V++W  MM 
Sbjct: 212 -VLGVQIHGYMIKAMGFSQSVYTSSTLVDFYSRNGEFDMAKTVFDNLQCKNVVTWCTMMQ 270

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILG---DLKRGKQLHAQVVLGG 281
           L +      DAL++F EM     I + V   N  + +  LG    +  G QLH+  +  G
Sbjct: 271 LHIRDGRPEDALQLFDEM-----ISEGVVSPNEFAFSIALGACESIALGSQLHSLAIKHG 325

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           L S LR+SN++++MY + G +    ++F  I +  +VSWTA IS Y QNG   +A+    
Sbjct: 326 LASHLRVSNALLSMYGRIGLVQQLEAMFRGIEDPDIVSWTAAISAYFQNGHGEKAIALLS 385

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +M  +     D     S+L++  +LA L+   Q H +A + G        N LI+ YSKC
Sbjct: 386 RMHSQGLTPND-YAFSSVLSSCADLALLDQGRQFHCLALKLGCDVKTCTGNALINMYSKC 444

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G +  A + F+ M   RDV SWN++I+G+  +G  +  L  + +M   G  P+ ST L +
Sbjct: 445 GQIVPARLAFDIMDH-RDVTSWNSLIHGHAQHGEVDMVLKAFSEMCSNGGEPNESTLLGV 503

Query: 462 LNACGHAGLTNDGLVIF-NQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           L AC HAGL ++G+  F + M        +  HY C+VD+L R+G   DA  L  ++   
Sbjct: 504 LAACNHAGLVDEGVAFFRSAMAGLYGTFLTPPHYACMVDMLGRSGRFDDALCLIEEMPFE 563

Query: 521 MGPNIWRALLSGCVLH----VGRFQDAEALRSGSQKKG-IIKIPGISFLNSTSRD 570
            G  +W+ LL+ C LH     GR    + +    Q     + + GI  ++   RD
Sbjct: 564 PGVLVWKTLLASCRLHGNLETGRLAAEKLVELSDQDSASYVLMSGIHAMHGEWRD 618



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 126/517 (24%), Positives = 226/517 (43%), Gaps = 56/517 (10%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  S L+  Y + G  + AE +   +   +VV+++ ++     +G    + +A   MM
Sbjct: 131 DAWVGSCLVELYARCGSTRAAEAVLARMESPDVVAYTSLVSALCRSGEFGMAAEALGQMM 190

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK-----------------------F 100
             G++PN  T+  +L A      L L   IHG M+K                       F
Sbjct: 191 GHGVMPNEHTVTSILAACC---PLVLGVQIHGYMIKAMGFSQSVYTSSTLVDFYSRNGEF 247

Query: 101 GLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLV-PNAVTMLTVIRG 159
            +   +F+ L+   +V+   ++   I +   + A+ LF+     G+V PN       +  
Sbjct: 248 DMAKTVFDNLQCKNVVTWCTMMQLHIRDGRPEDALQLFDEMISEGVVSPNEFAFSIALGA 307

Query: 160 C--VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
           C  +ALGS+     +H L IK GL   + V+N++L MY  +  +     +FR +E  D++
Sbjct: 308 CESIALGSQ-----LHSLAIKHGLASHLRVSNALLSMYGRIGLVQQLEAMFRGIEDPDIV 362

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           SWT  +  +    +   A+ +   M    +  +  A  +++S  A L  L +G+Q H   
Sbjct: 363 SWTAAISAYFQNGHGEKAIALLSRMHSQGLTPNDYAFSSVLSSCADLALLDQGRQFHCLA 422

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           +  G   +    N++I MYSKCG +  +R  F+ +  + + SW ++I G+ Q+G     L
Sbjct: 423 LKLGCDVKTCTGNALINMYSKCGQIVPARLAFDIMDHRDVTSWNSLIHGHAQHGEVDMVL 482

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAF----EAGF-------PR 386
             F +M     +  +S TL+ +L A      ++      G+AF     AG        P 
Sbjct: 483 KAFSEMCSNGGEPNES-TLLGVLAACNHAGLVD-----EGVAFFRSAMAGLYGTFLTPPH 536

Query: 387 YRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM 446
           Y     C++    + G  D A  + EEM F   V+ W T++    ++G+ ET      K+
Sbjct: 537 Y----ACMVDMLGRSGRFDDALCLIEEMPFEPGVLVWKTLLASCRLHGNLETGRLAAEKL 592

Query: 447 TETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIE 483
            E  +  DS++Y+ +       G   D  ++  +M E
Sbjct: 593 VELSD-QDSASYVLMSGIHAMHGEWRDADMVRRRMDE 628


>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Vitis vinifera]
          Length = 694

 Score =  256 bits (653), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 166/556 (29%), Positives = 289/556 (51%), Gaps = 37/556 (6%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEK-NVVSWSIVIHGYSINGFHEKSMKAFSHMM-LSGLL 68
           L++ YF     + A+ +F  I    ++  W+ ++   + N    + ++ F  ++    L 
Sbjct: 44  LINLYFSCHLFQSAKLVFQTIENPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLK 103

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------L 106
           P++FT   VL A +GL  +   + +H  ++K G   D                      L
Sbjct: 104 PDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKL 163

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           F+ +    + S N +++ +  +   ++A+ LF   + SG  P++VT+ TVI  C  L   
Sbjct: 164 FDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDL 223

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
              + IH   ++ G  LD  V+++++DMY     L+ A ++F +++ K+V+SW  M+   
Sbjct: 224 ERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIA-- 281

Query: 227 VDFEYAGDA---LKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
             +   GD+   +++FR M +  I      L +++   +   +L+ GK +H  ++   ++
Sbjct: 282 -GYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVE 340

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
           +++ +++S+I +Y KCG++ S+ +VF  + + ++VSW  +ISGYV+ G   EAL  F  M
Sbjct: 341 ADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDM 400

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
           R+      D+IT  S+L A  +LA LE   ++H    E+       V   L+  Y+KCG 
Sbjct: 401 RKAGVKP-DAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGA 459

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           VD A  +F ++   RD VSW ++I  YG +G    AL L+ KM ++   PD  T+L+IL+
Sbjct: 460 VDEALHIFNQLP-ERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILS 518

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK---LLEG 520
           AC HAGL ++G   FNQMI E   KP+ EHY C++DLL R G L +A  +  +   + E 
Sbjct: 519 ACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPDIRED 578

Query: 521 MGPNIWRALLSGCVLH 536
           +G  +   L S C LH
Sbjct: 579 VG--LLSTLFSACHLH 592



 Score =  201 bits (511), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 140/447 (31%), Positives = 235/447 (52%), Gaps = 9/447 (2%)

Query: 79  VAAAGLQN-LELARSIHGLMVK---FGLESDLFEGLKNPYLVSC-NAIVAGFINNKLFQQ 133
           + + GLQN + L +S+  L      F     +F+ ++NP  ++  N ++A    N +F +
Sbjct: 29  IVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLDITLWNGLMAACTKNFIFIE 88

Query: 134 AVLLFN-FFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVL 192
            + +F+       L P+A T  +V++ C  LG     +++H   IK G  +DV V +S +
Sbjct: 89  GLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAV 148

Query: 193 DMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTV 252
            MY+     + AI++F EM  +DV SW  ++  +        AL++F EM+ S    D+V
Sbjct: 149 GMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSV 208

Query: 253 ALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQI 312
            L  +IS  A L DL+RGK++H ++V  G   +  +S++++ MY KCG L+ ++ VF QI
Sbjct: 209 TLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQI 268

Query: 313 TEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEIC 372
             K++VSW ++I+GY   G ++  +  F +M +E      + TL SIL A      L++ 
Sbjct: 269 QRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLT-TLSSILMACSRSVNLQLG 327

Query: 373 LQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGV 432
             +HG            V + LI  Y KCGN+  A  VF+ M    +VVSWN +I GY  
Sbjct: 328 KFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMP-KTNVVSWNVMISGYVK 386

Query: 433 NGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQE 492
            G    AL ++  M + G  PD+ T+ S+L AC    +   G  I N +I E+K++ ++ 
Sbjct: 387 VGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFII-ESKLEINEV 445

Query: 493 HYGCVVDLLARAGCLSDASGLAGKLLE 519
             G ++D+ A+ G + +A  +  +L E
Sbjct: 446 VMGALLDMYAKCGAVDEALHIFNQLPE 472



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 107/419 (25%), Positives = 209/419 (49%), Gaps = 12/419 (2%)

Query: 149 NAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIF 208
           +   +L++++ C+        +LIH   + LGL  ++++  S++++Y       +A  +F
Sbjct: 2   DTTKLLSLLKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVF 61

Query: 209 REMECK-DVISWTRMMGLFVDFEYAGDALKIF-REMRKSRIICDTVALLNLISVNAILGD 266
           + +E   D+  W  +M          + L++F R +    +  D     +++   + LG 
Sbjct: 62  QTIENPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGR 121

Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISG 326
           +  GK +H  V+  G   ++ + +S + MY+KC   + +  +F+++ E+ + SW  +IS 
Sbjct: 122 VGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISC 181

Query: 327 YVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPR 386
           Y Q+G   +AL  F +M+       DS+TL +++++   L  LE   ++H     +GF  
Sbjct: 182 YYQDGQPEKALELFEEMKVSGFKP-DSVTLTTVISSCARLLDLERGKEIHMELVRSGFAL 240

Query: 387 YRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM 446
              V + L+  Y KCG +++A  VFE++   ++VVSWN++I GY + G  ++ + L+ +M
Sbjct: 241 DGFVSSALVDMYGKCGCLEMAKEVFEQIQ-RKNVVSWNSMIAGYSLKGDSKSCIELFRRM 299

Query: 447 TETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGC 506
            E G  P  +T  SIL AC  +     G  I   +I  N+V+        ++DL  + G 
Sbjct: 300 DEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYII-RNRVEADIFVNSSLIDLYFKCGN 358

Query: 507 LSDASGLAGKLLEGMGPNI--WRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISF 563
           +  A  +   + +    N+  W  ++SG V  VG + +A  + +  +K G +K   I+F
Sbjct: 359 IGSAENVFQNMPK---TNVVSWNVMISGYV-KVGSYLEALVIFTDMRKAG-VKPDAITF 412



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 170/335 (50%), Gaps = 23/335 (6%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D + SS L+  Y K G ++ A+ +F++I  KNVVSW+ +I GYS+ G  +  ++ F  M
Sbjct: 240 LDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRM 299

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------- 106
              G+ P   T+  +L+A +   NL+L + IHG +++  +E+D+                
Sbjct: 300 DEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNI 359

Query: 107 ------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                 F+ +    +VS N +++G++    + +A+++F   R +G+ P+A+T  +V+  C
Sbjct: 360 GSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPAC 419

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             L      + IH   I+  L ++  V  ++LDMY+    +D A+ IF ++  +D +SWT
Sbjct: 420 SQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWT 479

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+  +     A +ALK+F +M++S    D V  L ++S  +  G +  G     Q++  
Sbjct: 480 SMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAE 539

Query: 281 -GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE 314
            G +  +   + +I +  + G L  +  +  +  +
Sbjct: 540 YGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPD 574


>gi|326522859|dbj|BAJ88475.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 691

 Score =  256 bits (653), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 180/595 (30%), Positives = 290/595 (48%), Gaps = 44/595 (7%)

Query: 10  KLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLP 69
           K L    K+G++ +A +LFD +P KNVV+W+  + G + NG  E + + F+ M+ SG+  
Sbjct: 34  KRLDGLMKAGRVADALDLFDRMPRKNVVAWTSAVSGLTRNGRPEAAGEMFADMVESGVAL 93

Query: 70  NSF--TMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG------------------ 109
           N F         AAAG   L     +H L V+ G   D + G                  
Sbjct: 94  NDFACNAALAACAAAGPGALRTGEQVHSLAVRAGFVGDAWVGSCLVELYARCGSTRAAEA 153

Query: 110 ----LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
               +++P +V+  ++V+    +  F  A        G G++PN  T+ +++  C  L  
Sbjct: 154 VLARMESPDVVAYTSLVSALCRSGEFGMAAEALGQMMGHGVMPNEHTVTSILAACCPL-- 211

Query: 166 RALCELIHGLTIK-LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
             L   IHG  IK +G    V  +++++D YS   + D A  +F  ++CK+V++W  MM 
Sbjct: 212 -VLGVQIHGYMIKAMGFSQSVYTSSTLVDFYSRNGEFDMAKTVFDNLQCKNVVTWCTMMQ 270

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILG---DLKRGKQLHAQVVLGG 281
           L +      DAL++F EM     I + V   N  + +  LG    +  G QLH+  +  G
Sbjct: 271 LHIRDGRPEDALQLFDEM-----ISEGVVSPNEFAFSIALGACESIALGSQLHSLAIKHG 325

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           L S LR+SN++++MY + G +    ++F  I +  +VSWTA IS Y QNG   +A+    
Sbjct: 326 LASHLRVSNALLSMYGRIGLVQQLEAMFRGIEDPDIVSWTAAISAYFQNGHGEKAIALLS 385

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +M  +     D     S+L++  +LA L+   Q H +A + G        N LI+ YSKC
Sbjct: 386 RMHSQGLTPND-YAFSSVLSSCADLALLDQGRQFHCLALKLGCDVKTCTGNALINMYSKC 444

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G +  A + F+ M   RDV SWN++I+G+  +G  +  L  + +M   G  P+ ST L +
Sbjct: 445 GQIVPARLAFDIMDH-RDVTSWNSLIHGHAQHGEVDMVLKAFSEMCSNGGEPNESTLLGV 503

Query: 462 LNACGHAGLTNDGLVIF-NQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           L AC HAGL ++G+  F + M        +  HY C+VD+L R+G   DA  L  ++   
Sbjct: 504 LAACNHAGLVDEGVAFFRSAMAGLYGTFLTPPHYACMVDMLGRSGRFDDALCLIEEMPFE 563

Query: 521 MGPNIWRALLSGCVLH----VGRFQDAEALRSGSQKKG-IIKIPGISFLNSTSRD 570
            G  +W+ LL+ C LH     GR    + +    Q     + + GI  ++   RD
Sbjct: 564 PGVLVWKTLLASCRLHGNLETGRLAAEKLVELSDQDSASYVLMSGIHAMHGEWRD 618



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 126/517 (24%), Positives = 226/517 (43%), Gaps = 56/517 (10%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  S L+  Y + G  + AE +   +   +VV+++ ++     +G    + +A   MM
Sbjct: 131 DAWVGSCLVELYARCGSTRAAEAVLARMESPDVVAYTSLVSALCRSGEFGMAAEALGQMM 190

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK-----------------------F 100
             G++PN  T+  +L A      L L   IHG M+K                       F
Sbjct: 191 GHGVMPNEHTVTSILAACC---PLVLGVQIHGYMIKAMGFSQSVYTSSTLVDFYSRNGEF 247

Query: 101 GLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLV-PNAVTMLTVIRG 159
            +   +F+ L+   +V+   ++   I +   + A+ LF+     G+V PN       +  
Sbjct: 248 DMAKTVFDNLQCKNVVTWCTMMQLHIRDGRPEDALQLFDEMISEGVVSPNEFAFSIALGA 307

Query: 160 C--VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
           C  +ALGS+     +H L IK GL   + V+N++L MY  +  +     +FR +E  D++
Sbjct: 308 CESIALGSQ-----LHSLAIKHGLASHLRVSNALLSMYGRIGLVQQLEAMFRGIEDPDIV 362

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           SWT  +  +    +   A+ +   M    +  +  A  +++S  A L  L +G+Q H   
Sbjct: 363 SWTAAISAYFQNGHGEKAIALLSRMHSQGLTPNDYAFSSVLSSCADLALLDQGRQFHCLA 422

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           +  G   +    N++I MYSKCG +  +R  F+ +  + + SW ++I G+ Q+G     L
Sbjct: 423 LKLGCDVKTCTGNALINMYSKCGQIVPARLAFDIMDHRDVTSWNSLIHGHAQHGEVDMVL 482

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAF----EAGF-------PR 386
             F +M     +  +S TL+ +L A      ++      G+AF     AG        P 
Sbjct: 483 KAFSEMCSNGGEPNES-TLLGVLAACNHAGLVD-----EGVAFFRSAMAGLYGTFLTPPH 536

Query: 387 YRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM 446
           Y     C++    + G  D A  + EEM F   V+ W T++    ++G+ ET      K+
Sbjct: 537 Y----ACMVDMLGRSGRFDDALCLIEEMPFEPGVLVWKTLLASCRLHGNLETGRLAAEKL 592

Query: 447 TETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIE 483
            E  +  DS++Y+ +       G   D  ++  +M E
Sbjct: 593 VELSD-QDSASYVLMSGIHAMHGEWRDADMVRRRMDE 628


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  256 bits (653), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 157/517 (30%), Positives = 266/517 (51%), Gaps = 24/517 (4%)

Query: 42  VIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG 101
           ++ GY+ +   + ++  FS M    + P  +    +L       +L+  + IHG ++  G
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 102 LESDLF--EGLKNPY--------------------LVSCNAIVAGFINNKLFQQAVLLFN 139
              +LF   G+ N Y                    LV  N +++G+  N   + A++L  
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVL 120

Query: 140 FFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLM 199
                G  P+++T+++++          +   +HG  ++ G    V+V+ +++DMYS   
Sbjct: 121 RMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCG 180

Query: 200 DLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLIS 259
            +  A  IF  M+ + V+SW  M+  +V    A  A+ IF++M    +    V ++  + 
Sbjct: 181 SVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALH 240

Query: 260 VNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVS 319
             A LGDL+RGK +H  V    L S++ + NS+I+MYSKC  +D +  +F  +  K+LVS
Sbjct: 241 ACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVS 300

Query: 320 WTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIA 379
           W A+I GY QNGC  EALN F +M Q +    DS T+VS++ A  EL+       +HG+ 
Sbjct: 301 WNAMILGYAQNGCVNEALNAFCEM-QSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLV 359

Query: 380 FEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETA 439
                 +   V   L+  Y+KCG +  A  +F+ M   R V++WN +I GYG +G G+T+
Sbjct: 360 IRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMN-ARHVITWNAMIDGYGTHGLGKTS 418

Query: 440 LALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVD 499
           + L+ +M +    P+  T+L  L+AC H+GL  +GL  F  M ++  ++P+ +HYG +VD
Sbjct: 419 VELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMKKDYGIEPTMDHYGAMVD 478

Query: 500 LLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
           LL RAG L+ A     K+    G  ++ A+L  C +H
Sbjct: 479 LLGRAGRLNQAWDFIQKMPIKPGITVYGAMLGACKIH 515



 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 104/378 (27%), Positives = 196/378 (51%), Gaps = 23/378 (6%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTM 74
           Y K  +I +A N+FD +PE+++V W+ +I GY+ NGF + ++     M   G  P+S T+
Sbjct: 75  YAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVLRMSEEGHRPDSITI 134

Query: 75  VGVLVAAAGLQNLELARSIHGLMVKFGLES----------------------DLFEGLKN 112
           V +L A A  + L +  ++HG +++ G ES                       +F+G+ +
Sbjct: 135 VSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDH 194

Query: 113 PYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELI 172
             +VS N+++ G++ +   + A+L+F      G+ P  VT++  +  C  LG     + +
Sbjct: 195 RTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERGKFV 254

Query: 173 HGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYA 232
           H L  +L L  DVSV NS++ MYS    +D A  IF+ +  K ++SW  M+  +      
Sbjct: 255 HKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCV 314

Query: 233 GDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSI 292
            +AL  F EM+   I  D+  ++++I   A L   ++ K +H  V+   L   + +  ++
Sbjct: 315 NEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRFLDKNVFVMTAL 374

Query: 293 IAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVD 352
           + MY+KCG + ++R +F+ +  + +++W A+I GY  +G  + ++  F +M++  T   +
Sbjct: 375 VDMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLGKTSVELFKEMKK-GTIKPN 433

Query: 353 SITLVSILTASGELAALE 370
            IT +  L+A      +E
Sbjct: 434 DITFLCALSACSHSGLVE 451



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 141/285 (49%), Gaps = 22/285 (7%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ L+  Y K G +  A  +FD +  + VVSW+ +I GY  +G  E +M  F  M+  G+
Sbjct: 169 STALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGV 228

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES----------------------D 105
            P + T++G L A A L +LE  + +H L+ +  L+S                      D
Sbjct: 229 QPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAAD 288

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F+ L+N  LVS NA++ G+  N    +A+  F   +   + P++ TM++VI     L  
Sbjct: 289 IFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSI 348

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
               + IHGL I+  L  +V V  +++DMY+    +  A ++F  M  + VI+W  M+  
Sbjct: 349 PRQAKWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMIDG 408

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG 270
           +        ++++F+EM+K  I  + +  L  +S  +  G ++ G
Sbjct: 409 YGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACSHSGLVEEG 453



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 102/213 (47%), Gaps = 28/213 (13%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+S Y K  ++  A ++F  +  K +VSW+ +I GY+ NG   +++ AF  M    + P+
Sbjct: 273 LISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPD 332

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFE 108
           SFTMV V+ A A L     A+ IHGL+++  L+ +                      LF+
Sbjct: 333 SFTMVSVIPALAELSIPRQAKWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFD 392

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            +   ++++ NA++ G+  + L + +V LF   +   + PN +T L  +  C   G   L
Sbjct: 393 MMNARHVITWNAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACSHSG---L 449

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDL 201
            E   GL     +  D  +  + +D Y  ++DL
Sbjct: 450 VE--EGLCFFESMKKDYGIEPT-MDHYGAMVDL 479


>gi|359489486|ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Vitis vinifera]
          Length = 786

 Score =  256 bits (653), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 171/625 (27%), Positives = 287/625 (45%), Gaps = 86/625 (13%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  D  + + ++  Y  SG++ EA  LF E P ++ ++WS +I GY   G   ++++ F 
Sbjct: 68  PDRDECSWNTMIGAYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEALELFW 127

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPYL--- 115
            M   G  PN FT   VL   +    LE  + IH   +K   +S+ F   GL + Y    
Sbjct: 128 EMQYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCK 187

Query: 116 ------------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
                             V   A+V G+  N    +A+  F   RG G+  N  T  +++
Sbjct: 188 CILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSIL 247

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
             C ++ +      +HG  ++ G   +V V ++++DMYS   DL  A ++   ME  D +
Sbjct: 248 TACGSISACGFGAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPV 307

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           SW  M+   V      +AL +FR M    +  D     ++++  + + D++    +H+ +
Sbjct: 308 SWNSMIVGCVRQGLGEEALSLFRIMHLRHMKIDEFTYPSVLNCFSFVMDMRNAMSVHSLI 367

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           V  G ++   ++N+++ MY+K G  D +  VF ++T+K ++SWT++++G V NG   EAL
Sbjct: 368 VKTGFEAYKLVNNALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEAL 427

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
             F +MR       D I + ++L+A  EL  LE   Q+H    ++G     SV N L+S 
Sbjct: 428 RLFCEMRIMGIHP-DQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSM 486

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           Y+KCG ++ A  VF+ M  ++DV++W  +I GY  NG G                     
Sbjct: 487 YAKCGCIEDANKVFDSME-IQDVITWTALIVGYAQNGRGRD------------------- 526

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL 517
                    HAGL   G   F  M E   +KP  EHY C++DLL R+G L +A  L  ++
Sbjct: 527 ---------HAGLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQM 577

Query: 518 LEGMGPNIWRALLSGCVLH---------------------------------VGRFQDAE 544
                  +W+ALL+ C +H                                  G++++A 
Sbjct: 578 AVQPDATVWKALLAACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAA 637

Query: 545 ALRSGSQKKGIIKIPGISFLNSTSR 569
             R   + +G+ K PG S++  +S+
Sbjct: 638 KTRRLMKLRGVSKEPGCSWIEMSSK 662



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 121/424 (28%), Positives = 188/424 (44%), Gaps = 47/424 (11%)

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C  L    L   I       G +   S +N VL   S    +D A ++F  M  +D  SW
Sbjct: 16  CHQLEHTELNHHIRRFVNSCGTVHSSSDSNWVLSNLSKCGRVDDARKLFDVMPDRDECSW 75

Query: 220 TRMMGLFVDFEYAGDALKIFREMR-------------KSRIICDTVALL----------- 255
             M+G + +     +A K+F E                 R  CD  AL            
Sbjct: 76  NTMIGAYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEALELFWEMQYEGER 135

Query: 256 -------NLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSV 308
                  +++ V ++   L++GKQ+HA  +     S   +   ++ MY+KC  +  +  +
Sbjct: 136 PNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYL 195

Query: 309 FNQITEK-SLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELA 367
           F    +K + V WTA+++GY QNG   +A+  F  MR E  +  +  T  SILTA G ++
Sbjct: 196 FELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIE-CNQFTFPSILTACGSIS 254

Query: 368 ALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
           A     Q+HG    +GF     V + L+  YSKCG++  A  + E M  + D VSWN++I
Sbjct: 255 ACGFGAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETME-VDDPVSWNSMI 313

Query: 428 YGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKV 487
            G    G GE AL+L+  M       D  TY S+LN         + + + + +     V
Sbjct: 314 VGCVRQGLGEEALSLFRIMHLRHMKIDEFTYPSVLNCFSFVMDMRNAMSVHSLI-----V 368

Query: 488 KPSQEHYGCV----VDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDA 543
           K   E Y  V    VD+ A+ G    A  +  K+ +    + W +L++GCV H G ++  
Sbjct: 369 KTGFEAYKLVNNALVDMYAKRGYFDYAFDVFEKMTDKDVIS-WTSLVTGCV-HNGSYE-- 424

Query: 544 EALR 547
           EALR
Sbjct: 425 EALR 428


>gi|224126745|ref|XP_002319916.1| predicted protein [Populus trichocarpa]
 gi|222858292|gb|EEE95839.1| predicted protein [Populus trichocarpa]
          Length = 606

 Score =  256 bits (653), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 174/602 (28%), Positives = 296/602 (49%), Gaps = 58/602 (9%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVS----WSIVIHGYSINGFHEKSMKAF 59
           +P + +  +  Y KSG + EA ++ + I    + +    ++ ++   +        ++  
Sbjct: 24  NPQSKAYKIIQYCKSGSLFEAIHVLNSIDWTRLSNKPFFYASLLQTCTKAVSFTHGIQFH 83

Query: 60  SHMMLSGLLPNSFTMVGVLVAAAGL-QNLELARSIHGLMVKFGLESDLFEGLKNPYLVSC 118
           SH + SGL  + F    +L     L  NL  AR +             F+GL    L+S 
Sbjct: 84  SHAIKSGLDTDRFVGNSLLALYFKLGPNLFEARRV-------------FDGLFYKDLISW 130

Query: 119 NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIK 178
            +++ G++  +  ++++ LF    G G+ PN  T+  VI+ C  LG   L +  HG+ + 
Sbjct: 131 TSMITGYVKVEKPKKSLELFLEMLGLGIEPNGFTLSAVIKACSGLGDLRLGKCFHGVVMV 190

Query: 179 LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKI 238
            G  L+  ++ +++DMY     +D AI +F E+   D I WT ++  F   +    AL  
Sbjct: 191 RGFDLNDVISTALIDMYGRNSAVDDAILVFVELPQPDAICWTSIISAFTRNDVYDKALGF 250

Query: 239 FREM-RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYS 297
           F  M RK  +  D      +++    LG LK+GK++HA+V+  GL   + + +S++ MY 
Sbjct: 251 FYSMCRKHGLSPDGFTFGTVLTACGNLGRLKQGKEVHAKVITSGLSGNVFVESSLVDMYG 310

Query: 298 KCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLV 357
           KC  ++ S+ VF++++ K+LVSWTA++ GY QNG     +  F   R+ K   VD+ +  
Sbjct: 311 KCRLVNQSQCVFDRMSVKNLVSWTALLGGYCQNGDFESVIRIF---REGK--KVDTYSFG 365

Query: 358 SILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFL 417
           ++L A   LAA+    ++H    +    R    ++ L+  Y+KCG +D AY +F  M  +
Sbjct: 366 TVLRACAGLAAVRQGKEVHCQYVKRCCWRDVVTESALVDLYAKCGCIDFAYRIFVRMS-V 424

Query: 418 RDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVI 477
           R++++WN++IYG+  NG G     L+ +M E G  PD  +++ +L AC HAGL + G   
Sbjct: 425 RNLITWNSMIYGFAQNGRGGEVFQLFDEMIEEGIRPDYISFVGVLFACSHAGLVDQGKKY 484

Query: 478 FNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH- 536
           F  M E  ++KP  EHY C++DLL RAG L +A  L         P++W  LL  C    
Sbjct: 485 FAAMTEVYEIKPGIEHYNCMIDLLGRAGLLEEAENLIENANCRDEPSLWTVLLGACAASP 544

Query: 537 --------------------------------VGRFQDAEALRSGSQKKGIIKIPGISFL 564
                                           VGR+ DA  +R+   K+G+ K+PG S++
Sbjct: 545 HSATAERIAKKAVELKPDHHLSYVYLANVYRAVGRWDDAVKIRNLMTKRGVGKMPGTSWI 604

Query: 565 NS 566
            +
Sbjct: 605 ET 606


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  256 bits (653), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 158/560 (28%), Positives = 277/560 (49%), Gaps = 58/560 (10%)

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------- 105
           M+L G    S    G+L   A L++LE  R +H  ++K G++ +                
Sbjct: 38  MILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGS 97

Query: 106 ------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                 +F+ +++  +VS  A++  F+      +A   +   + +G  P+ VT ++++  
Sbjct: 98  LTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNA 157

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
                   L + +H   ++ GL L+  V  S++ MY+   D+  A  IF  +  K+V++W
Sbjct: 158 FTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTW 217

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           T ++  +        AL++   M+++ +  + +   +++        L+ GK++H  ++ 
Sbjct: 218 TLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQ 277

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G   EL + NS+I MY KCG L+ +R +F+ +  + +V+WTA+++GY Q G   EA+N 
Sbjct: 278 SGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINL 337

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           F +M+Q+     D +T  S+LT+    A L+   ++H     AG+     +Q+ L+S Y+
Sbjct: 338 FRRMQQQGIKP-DKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYA 396

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGY-GVNGHGETALALYHKMTETGEVPDSSTY 458
           KCG++D A +VF +M   R+VV+W  II G    +G    AL  + +M + G  PD  T+
Sbjct: 397 KCGSMDDASLVFNQMS-ERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVTF 455

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
            S+L+AC H GL  +G   F  M  +  +KP  EHY C VDLL RAG L +A  +   + 
Sbjct: 456 TSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILSMP 515

Query: 519 EGMGPNIWRALLSGCVLH---------------------------------VGRFQDAEA 545
              GP++W ALLS C +H                                  GR++DAE 
Sbjct: 516 FIPGPSVWGALLSACRVHSDVERGERAAENVLKLDPDDDGAYVALSSIYAAAGRYEDAEK 575

Query: 546 LRSGSQKKGIIKIPGISFLN 565
           +R   +K+ ++K PG S++ 
Sbjct: 576 VRQVMEKRDVVKEPGQSWIE 595



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 125/443 (28%), Positives = 222/443 (50%), Gaps = 38/443 (8%)

Query: 124 GFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLIL 183
           G +N  + Q   +  + FRG            +++ C  L S      +H   +K G+  
Sbjct: 33  GIMNTMILQGTRVYSDVFRG------------LLQECARLRSLEQGREVHAAILKSGIQP 80

Query: 184 DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMR 243
           +  + N++L MY+    L  A ++F  +  ++++SWT M+  FV      +A K +  M+
Sbjct: 81  NRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMK 140

Query: 244 KSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLD 303
            +    D V  ++L++       L+ G+++H ++V  GL+ E R+  S++ MY+KCGD+ 
Sbjct: 141 LAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDIS 200

Query: 304 SSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTAS 363
            +R +F+++ EK++V+WT +I+GY Q G    AL     M+Q +  + + IT  SIL   
Sbjct: 201 KARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEV-APNKITFASILQGC 259

Query: 364 GELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSW 423
              AALE   ++H    ++G+ R   V N LI+ Y KCG ++ A  +F ++   RDVV+W
Sbjct: 260 TTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPH-RDVVTW 318

Query: 424 NTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIE 483
             ++ GY   G  + A+ L+ +M + G  PD  T+ S+L +C       +G  I  Q++ 
Sbjct: 319 TAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLV- 377

Query: 484 ENKVKPSQEHYG---------CVVDLLARAGCLSDASGLAGKLLEGMGPNI--WRALLSG 532
                    H G          +V + A+ G + DAS +  ++ E    N+  W A+++G
Sbjct: 378 ---------HAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSER---NVVAWTAIITG 425

Query: 533 CVLHVGRFQDAEALRSGSQKKGI 555
           C    GR ++A       +K+GI
Sbjct: 426 CCAQHGRCREALEYFDQMKKQGI 448



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 129/514 (25%), Positives = 252/514 (49%), Gaps = 33/514 (6%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y  + LLS Y K G + +A  +FD I ++N+VSW+ +I  +     + ++ K +  M L+
Sbjct: 83  YLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLA 142

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-------------------- 105
           G  P+  T V +L A    + L+L + +H  +V+ GLE +                    
Sbjct: 143 GCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKA 202

Query: 106 --LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
             +F+ L    +V+   ++AG+        A+ L    + + + PN +T  ++++GC   
Sbjct: 203 RVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTP 262

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
            +    + +H   I+ G   ++ V NS++ MY     L+ A ++F ++  +DV++WT M+
Sbjct: 263 AALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMV 322

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
             +    +  +A+ +FR M++  I  D +   ++++  +    L+ GK++H Q+V  G  
Sbjct: 323 TGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYN 382

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISG-YVQNGCAREALNQFIK 342
            ++ L +++++MY+KCG +D +  VFNQ++E+++V+WTAII+G   Q+G  REAL  F +
Sbjct: 383 LDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREALEYFDQ 442

Query: 343 MRQEKTDSVDSITLVSILTASGELAALEICLQ-LHGIAFEAGFPRYRSVQNCLISSYSKC 401
           M+++     D +T  S+L+A   +  +E   +    +  + G        +C +    + 
Sbjct: 443 MKKQGIKP-DKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRA 501

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNG---HGETALALYHKMTETGEVPDSSTY 458
           G+++ A  V   M F+     W  ++    V+     GE A     K+    +  D   Y
Sbjct: 502 GHLEEAENVILSMPFIPGPSVWGALLSACRVHSDVERGERAAENVLKL----DPDDDGAY 557

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVK-PSQ 491
           +++ +    AG   D   +   M + + VK P Q
Sbjct: 558 VALSSIYAAAGRYEDAEKVRQVMEKRDVVKEPGQ 591



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 94/401 (23%), Positives = 182/401 (45%), Gaps = 30/401 (7%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           ++P   + L+  Y K G I +A  +FD +PEKNVV+W+++I GY+  G  + +++    M
Sbjct: 181 LEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETM 240

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKF--------------------GL 102
             + + PN  T   +L        LE  + +H  +++                     GL
Sbjct: 241 QQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGL 300

Query: 103 ES--DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
           E    LF  L +  +V+  A+V G+       +A+ LF   +  G+ P+ +T  +V+  C
Sbjct: 301 EEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSC 360

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
            +       + IH   +  G  LDV + ++++ MY+    +D A  +F +M  ++V++WT
Sbjct: 361 SSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWT 420

Query: 221 RMM-GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
            ++ G         +AL+ F +M+K  I  D V   +++S    +G ++ G++    + L
Sbjct: 421 AIITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYL 480

Query: 280 G-GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVS-WTAIISG-YVQNGCAR-- 334
             G++  +   +  + +  + G L+ + +V   +      S W A++S   V +   R  
Sbjct: 481 DYGIKPMVEHYSCFVDLLGRAGHLEEAENVILSMPFIPGPSVWGALLSACRVHSDVERGE 540

Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQL 375
            A    +K+  +  D    + L SI  A+G     E   Q+
Sbjct: 541 RAAENVLKL--DPDDDGAYVALSSIYAAAGRYEDAEKVRQV 579


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  255 bits (652), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 188/665 (28%), Positives = 310/665 (46%), Gaps = 113/665 (16%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKN--VVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           +S L+S Y   G +  A +L    P  +  V  W+ +I  Y  NG   K +  F  M   
Sbjct: 62  TSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSL 121

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPY--------- 114
              P+++T   V  A   + ++    S H L +  G  S++F G  L   Y         
Sbjct: 122 SWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDA 181

Query: 115 -----------LVSCNAIVAGFINNKLFQQAVLLFNFFRGS---GLVPNAVTMLTVIRGC 160
                      +VS N+I+  +   KL +  V L  F R +   G  P+ +T++ V+  C
Sbjct: 182 RKVFDEMSVWDVVSWNSIIESYA--KLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPC 239

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
            +LG+ +L + +H   +   +I ++ V N ++DMY+    +D A  +F  M  KDV+SW 
Sbjct: 240 ASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWN 299

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVA--------------------------- 253
            M+  +       DA+++F +M++ +I  D V                            
Sbjct: 300 AMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSS 359

Query: 254 --------LLNLISVNAILGDLKRGKQLHAQVVL-------GGLQSELRLSNSIIAMYSK 298
                   L++++S  A +G L  GK++H   +         G   E  + N +I MY+K
Sbjct: 360 GIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAK 419

Query: 299 CGDLDSSRSVFNQIT--EKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDS-VDSIT 355
           C  +D++R++F+ ++  E+ +V+WT +I GY Q+G A +AL    +M +E   +  ++ T
Sbjct: 420 CKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFT 479

Query: 356 LVSILTASGELAALEICLQLHGIAF---EAGFPRYRSVQNCLISSYSKCGNVDLAYIVFE 412
           +   L A   LAAL I  Q+H  A    +   P +  V NCLI  Y+KCG++  A +VF+
Sbjct: 480 ISCALVACASLAALRIGKQIHAYALRNQQNAVPLF--VSNCLIDMYAKCGSISDARLVFD 537

Query: 413 EMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTN 472
            M   ++ V+W +++ GYG++G+GE AL ++ +M   G   D  T L +L AC H+G+ +
Sbjct: 538 NM-MAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMID 596

Query: 473 DGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSG 532
            G+  FN+M     V P  EHY C+VDLL RAG L+ A  L  ++     P +W A LS 
Sbjct: 597 QGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSC 656

Query: 533 CVLH---------------------------------VGRFQDAEALRSGSQKKGIIKIP 559
           C +H                                  GR++D   +RS  + KG+ K P
Sbjct: 657 CRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRP 716

Query: 560 GISFL 564
           G S++
Sbjct: 717 GCSWV 721



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 100/349 (28%), Positives = 167/349 (47%), Gaps = 10/349 (2%)

Query: 170 ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKD--VISWTRMMGLFV 227
           +LIH   +  G IL +++ + ++  Y  +  L  A+ + R     D  V  W  ++  + 
Sbjct: 45  KLIHQKLLSFG-ILTLNLTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYG 103

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
           D   A   L +F  M       D      +      +  ++ G+  HA  ++ G  S + 
Sbjct: 104 DNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVF 163

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
           + N+++AMYS+C  L  +R VF++++   +VSW +II  Y + G  + AL  F +M  E 
Sbjct: 164 VGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEF 223

Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
               D+ITLV++L     L    +  QLH  A  +   +   V NCL+  Y+KCG +D A
Sbjct: 224 GCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEA 283

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
             VF  M  ++DVVSWN ++ GY   G  E A+ L+ KM E     D  T+ + ++    
Sbjct: 284 NTVFSNMS-VKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQ 342

Query: 468 AGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK 516
            GL  + L +  QM+    +KP++     V  +   +GC S  + + GK
Sbjct: 343 RGLGYEALGVCRQMLSSG-IKPNE-----VTLISVLSGCASVGALMHGK 385


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  255 bits (652), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 162/568 (28%), Positives = 295/568 (51%), Gaps = 38/568 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  S L++ + + G +  A+ +F ++ ++N V+ + ++ G +     E++ K F  M 
Sbjct: 385 DLYVGSALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEM- 443

Query: 64  LSGLLP-NSFTMVGVLVAAAGLQNLELAR----SIHGLMVKFGL---------------- 102
              L+  NS ++V +L       NL+  +     +H  + + GL                
Sbjct: 444 -KDLVEINSESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYG 502

Query: 103 -------ESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLT 155
                     +F+ + +   VS N++++G  +N+ F++AV  F+  + +G+VP+  ++++
Sbjct: 503 KCTAIDNACSVFQLMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVIS 562

Query: 156 VIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKD 215
            +  C +LG   L   IHG   K GL LDVSV+N++L +Y+    ++   ++F +M   D
Sbjct: 563 TLSSCSSLGWLTLGRQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKVFFQMPEYD 622

Query: 216 VISWTRMMGLFVDFEYAG-DALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
            +SW   +G    +E +   ALK F EM ++    + V  +N+++  +    L  G Q+H
Sbjct: 623 QVSWNSFIGALAKYEASVLQALKYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQIH 682

Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK-SLVSWTAIISGYVQNGCA 333
           A ++   +  +  + N+++A Y KC  ++    +F++++E+   VSW ++ISGY+ +G  
Sbjct: 683 ALILKYSVADDNAIENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMISGYLHSGIL 742

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC 393
            +A++    M Q +   +D  T  ++L+A   +A LE  +++H  A  A       V + 
Sbjct: 743 HKAMDLVWPMMQ-RGQKLDGFTFATVLSACASVATLERGMEVHACAVRACLESDVVVGSA 801

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           L+  Y+KCG +D A   FE M  +R++ SWN++I GY  +GHG+ AL ++ +M + G+ P
Sbjct: 802 LVDMYAKCGKIDYASRFFELMP-VRNIYSWNSMISGYARHGHGQKALKIFTRMKQHGQSP 860

Query: 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL 513
           D  T++ +L+AC H GL ++G   F  M E   + P  EH+ C+VDLL RAG +      
Sbjct: 861 DHVTFVGVLSACSHVGLVDEGYKHFKSMGEVYGLSPRIEHFSCMVDLLGRAGDVKKIEDF 920

Query: 514 AGKLLEGMGPN--IWRALLSGCVLHVGR 539
              +   M PN  IWR +L  C    GR
Sbjct: 921 IKTM--PMDPNILIWRTVLGACCRANGR 946



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 155/600 (25%), Positives = 279/600 (46%), Gaps = 49/600 (8%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L++ Y + G +  A  LFDE+P+KN+VSWS +I GY+ N   +++   F  ++
Sbjct: 174 DVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQNRMPDEACSLFKGVI 233

Query: 64  LSGLLPNSFTMVGVLVAA--AGLQNLELARSIHGLMVKFGLESDL--------------- 106
            SGLLPN F +   L A    G   ++L   IH  + K    SD+               
Sbjct: 234 SSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVSDMILSNVLMSMYSDCSG 293

Query: 107 --------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSG----LVPNAVTML 154
                   F+ +K    V+ N+I++ +        A  LF+  +  G    L PN  T+ 
Sbjct: 294 SIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGVELNLRPNEYTLC 353

Query: 155 TVIRGCVALGSRALCELIHGLTI--KLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME 212
           +++    +L    L  L   LT   K G + D+ V +++++ ++    +D A  IF++M 
Sbjct: 354 SLVTAACSLADCGLVLLEQMLTRIEKSGFLRDLYVGSALVNGFARYGLMDCAKMIFKQMY 413

Query: 213 CKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGK- 271
            ++ ++   +M          +A K+F+EM K  +  ++ +L+ L+S      +LK GK 
Sbjct: 414 DRNAVTMNGLMVGLARQHQGEEAAKVFKEM-KDLVEINSESLVVLLSTFTEFSNLKEGKR 472

Query: 272 ---QLHAQVVLGGL-QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGY 327
              ++HA +   GL  + + + N+++ MY KC  +D++ SVF  +  K  VSW ++ISG 
Sbjct: 473 KGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLMPSKDTVSWNSMISGL 532

Query: 328 VQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRY 387
             N    EA++ F  M++       + +++S L++   L  L +  Q+HG  F+ G    
Sbjct: 533 DHNERFEEAVSCFHTMKRNGM-VPSNFSVISTLSSCSSLGWLTLGRQIHGEGFKWGLDLD 591

Query: 388 RSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGET----ALALY 443
            SV N L++ Y++  +++    VF +M    D VSWN+ I   G     E     AL  +
Sbjct: 592 VSVSNALLTLYAETDSINECQKVFFQMPEY-DQVSWNSFI---GALAKYEASVLQALKYF 647

Query: 444 HKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLAR 503
            +M + G  P+  T+++IL A     +   G  I + +I +  V         ++    +
Sbjct: 648 LEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQI-HALILKYSVADDNAIENALLAFYGK 706

Query: 504 AGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISF 563
              + D   +  ++ E      W +++SG  LH G    A  L     ++G  K+ G +F
Sbjct: 707 CEQMEDCEIIFSRMSERRDEVSWNSMISG-YLHSGILHKAMDLVWPMMQRG-QKLDGFTF 764



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 86/393 (21%), Positives = 175/393 (44%), Gaps = 33/393 (8%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYS-INGFHEKSMKAFSH 61
           +D   S+ LL+ Y ++  I E + +F ++PE + VSW+  I   +       +++K F  
Sbjct: 590 LDVSVSNALLTLYAETDSINECQKVFFQMPEYDQVSWNSFIGALAKYEASVLQALKYFLE 649

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYL------ 115
           MM +G  PN  T + +L A +    L L   IH L++K+ +  D    ++N  L      
Sbjct: 650 MMQAGWRPNRVTFINILAAVSSFSVLGLGHQIHALILKYSVADD--NAIENALLAFYGKC 707

Query: 116 -------------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTV 156
                              VS N++++G++++ +  +A+ L       G   +  T  TV
Sbjct: 708 EQMEDCEIIFSRMSERRDEVSWNSMISGYLHSGILHKAMDLVWPMMQRGQKLDGFTFATV 767

Query: 157 IRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
           +  C ++ +      +H   ++  L  DV V ++++DMY+    +D A + F  M  +++
Sbjct: 768 LSACASVATLERGMEVHACAVRACLESDVVVGSALVDMYAKCGKIDYASRFFELMPVRNI 827

Query: 217 ISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG-KQLHA 275
            SW  M+  +    +   ALKIF  M++     D V  + ++S  + +G +  G K   +
Sbjct: 828 YSWNSMISGYARHGHGQKALKIFTRMKQHGQSPDHVTFVGVLSACSHVGLVDEGYKHFKS 887

Query: 276 QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISGYVQ-NGCA 333
              + GL   +   + ++ +  + GD+         +  + +++ W  ++    + NG  
Sbjct: 888 MGEVYGLSPRIEHFSCMVDLLGRAGDVKKIEDFIKTMPMDPNILIWRTVLGACCRANGRN 947

Query: 334 REALNQFIKM--RQEKTDSVDSITLVSILTASG 364
            E   +  KM    E  ++V+ + L ++  A G
Sbjct: 948 TELGQRAAKMLIELEPQNAVNYVLLSNMHAAGG 980



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 114/231 (49%), Gaps = 27/231 (11%)

Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISG 326
           L     LH Q+   G   ++   N++I +Y + G+L S+R +F+++ +K+LVSW+ +ISG
Sbjct: 156 LYDANHLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISG 215

Query: 327 YVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEIC--------LQLHGI 378
           Y QN    EA + F  +       + S  L +       L A + C        +Q+H  
Sbjct: 216 YTQNRMPDEACSLFKGV-------ISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIH-- 266

Query: 379 AFEAGFPRYRS--VQNCLISSYSKC-GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGH 435
           AF    P      + N L+S YS C G++D A+ VF+E+ F R+ V+WN+II  Y   G 
Sbjct: 267 AFICKLPCVSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKF-RNSVTWNSIISVYCRRGD 325

Query: 436 GETALALYHKM----TETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMI 482
             +A  L+  M     E    P+  T  S++ A     L + GLV+  QM+
Sbjct: 326 AVSAFKLFSVMQMEGVELNLRPNEYTLCSLVTAA--CSLADCGLVLLEQML 374


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  255 bits (651), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 168/612 (27%), Positives = 299/612 (48%), Gaps = 58/612 (9%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPE-KNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSG 66
           ++ L++ Y K G +  A  +F+ + + ++V SW+ +I G   NG   +++  F  M  + 
Sbjct: 202 ANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQNGMFLQALDLFRGMQRAV 261

Query: 67  LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL-------------------- 106
           L  NS+T VGVL     L  L L R +H  ++K G E ++                    
Sbjct: 262 LSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVNIQCNALLVMYTKCGRVDSALR 321

Query: 107 -FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
            F  +     +S N++++ ++ N L+ +A+   +     G  P+   ++++      LG 
Sbjct: 322 VFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGW 381

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
               + +H   IK  L  D  V N+++DMY     ++ +  +F  M  KD ISWT ++  
Sbjct: 382 LLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITC 441

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +       +AL+IFRE +K  I  D + + +++   + L  +   KQLH   +  GL  +
Sbjct: 442 YAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQLHCYAIRNGLL-D 500

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           L + N II +Y +CG++  S  +F  + +K +V+WT++I+ Y  +G   EAL  F +M+ 
Sbjct: 501 LVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQS 560

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
                 DS+ LVSIL A G L++L    ++HG      F    ++ + L+  YS CG++ 
Sbjct: 561 TDVQP-DSVALVSILGAIGGLSSLAKGKEVHGFLIRRNFHMEEAIVSSLVDMYSGCGSLS 619

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            A  VF  +   +D+V W  +I   G++GHG+ A+ L+ +M +TG  PD  ++L++L AC
Sbjct: 620 GALKVFNAVK-CKDMVLWTAMINATGMHGHGKQAIDLFKRMLQTGVTPDHVSFLALLYAC 678

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI 525
            H+ L N+G    + M+   +++P QEHY CVVDLL R+G   +A      +       +
Sbjct: 679 SHSKLVNEGKCYLDMMMSTYRLEPWQEHYACVVDLLGRSGQTEEAYEFIKSMPLKPKSVV 738

Query: 526 WRALLSGCVLH---------------------------------VGRFQDAEALRSGSQK 552
           W +LL  C +H                                 +G++ +A+ +R+   +
Sbjct: 739 WCSLLGACRVHKNHELAVVAANRLLELEPDNPGNYVLVSNVFAEMGKWNNAKEVRARISE 798

Query: 553 KGIIKIPGISFL 564
           +G+ K P  S++
Sbjct: 799 RGLRKDPACSWI 810



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 156/533 (29%), Positives = 261/533 (48%), Gaps = 31/533 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + ++KLL  Y K G++ +A  LFD +  + V SW+ +I  Y  +G   +++  +  M 
Sbjct: 94  DGFLATKLLFMYGKCGRVADARLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMR 153

Query: 64  LS---GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY---- 114
           LS   G+ P+  T+  VL A+    +      +HGL VK GL+   F    L   Y    
Sbjct: 154 LSAASGVAPDGCTLASVLKASGVEGDGRCGCEVHGLAVKHGLDRSTFVANALIAMYAKCG 213

Query: 115 -----------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
                            + S N++++G + N +F QA+ LF   + + L  N+ T + V+
Sbjct: 214 ILDSAMRVFELMHDGRDVASWNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVL 273

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
           + C  L    L   +H   +K G  +++  N ++L MY+    +D+A+++FRE++ KD I
Sbjct: 274 QVCTELAQLNLGRELHAALLKSGSEVNIQCN-ALLVMYTKCGRVDSALRVFREIDEKDYI 332

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           SW  M+  +V      +A++   EM +     D   +++L S    LG L  GK++HA  
Sbjct: 333 SWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYA 392

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           +   L S+ ++ N+++ MY KC  ++ S  VF+++  K  +SWT II+ Y Q+    EAL
Sbjct: 393 IKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCYAQSSRHIEAL 452

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
             F + ++E    VD + + SIL A   L  + +  QLH  A   G      V+N +I  
Sbjct: 453 EIFREAQKEGI-KVDPMMIGSILEACSGLETILLAKQLHCYAIRNGLLDL-VVKNRIIDI 510

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           Y +CG V  +  +FE +   +D+V+W ++I  Y  +G    AL L+ +M  T   PDS  
Sbjct: 511 YGECGEVYHSLKMFETVE-QKDIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVA 569

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
            +SIL A G       G  +   +I  N     +     +VD+ +  G LS A
Sbjct: 570 LVSILGAIGGLSSLAKGKEVHGFLIRRN-FHMEEAIVSSLVDMYSGCGSLSGA 621



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/252 (21%), Positives = 118/252 (46%), Gaps = 36/252 (14%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D    ++++  Y + G++  +  +F+ + +K++V+W+ +I+ Y+ +G   +++  F+ M
Sbjct: 499 LDLVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEM 558

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK--FGLES-------DLFEG---- 109
             + + P+S  +V +L A  GL +L   + +HG +++  F +E        D++ G    
Sbjct: 559 QSTDVQPDSVALVSILGAIGGLSSLAKGKEVHGFLIRRNFHMEEAIVSSLVDMYSGCGSL 618

Query: 110 ---LKNPYLVSCNAIV--AGFINNKLF----QQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
              LK    V C  +V     IN        +QA+ LF     +G+ P+ V+ L ++  C
Sbjct: 619 SGALKVFNAVKCKDMVLWTAMINATGMHGHGKQAIDLFKRMLQTGVTPDHVSFLALLYAC 678

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDL-------DAAIQIFREMEC 213
                 +  +L++     L +++         + Y+C++DL       + A +  + M  
Sbjct: 679 ------SHSKLVNEGKCYLDMMMSTYRLEPWQEHYACVVDLLGRSGQTEEAYEFIKSMPL 732

Query: 214 K-DVISWTRMMG 224
           K   + W  ++G
Sbjct: 733 KPKSVVWCSLLG 744


>gi|255538308|ref|XP_002510219.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis]
 gi|223550920|gb|EEF52406.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis]
          Length = 1113

 Score =  255 bits (651), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 168/553 (30%), Positives = 280/553 (50%), Gaps = 30/553 (5%)

Query: 6    YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
            Y S+ LL  Y K G++  A N FD +P ++VVSW+ +I GYS NG+   +++ F  M+  
Sbjct: 478  YVSTALLDLYMKLGRVSYAHNAFDYMPIRDVVSWNALICGYSRNGYDFSALELFVQMLKL 537

Query: 66   GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-------------------- 105
            G  P   T+VG+L +   L+ +   +SIHG  +K GL  D                    
Sbjct: 538  GFCPRQTTLVGLLPSCGQLELVFQGKSIHGFGIKSGLHLDPQVKNALTSMYAKCGDLEAA 597

Query: 106  --LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
              LFE + +  +VS N ++  +  N  F +A+ +F    G+G+  + VT++++       
Sbjct: 598  EYLFEEMMDKSVVSWNTMIGAYGQNGFFDEAMFVFKRMIGAGVEVSQVTIMSLP------ 651

Query: 164  GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
             + A  E IH  TIK+GL  D SV  S++ MY+     D A  ++  +  K+++S T ++
Sbjct: 652  SANANPESIHCYTIKVGLADDASVVTSLICMYARYGSTDHAELLYWSLPQKNLVSLTAII 711

Query: 224  GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
              + +    G  ++ F +M +  +  D+VA+L+++   A    +  G   H   +  GL 
Sbjct: 712  TSYAEAGNLGLVMESFSQMHQLNMKPDSVAMLSILHGIADPVHICIGHVFHGYAIKSGLD 771

Query: 284  SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
            +   ++N +I+MYSK  ++++   +F+ + EK L+SW ++ISG VQ G A  A+  F +M
Sbjct: 772  TFNLVTNGLISMYSKFNNVEALFGLFSGMHEKPLISWNSVISGCVQAGRASHAIELFCQM 831

Query: 344  RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
            +    +  D+IT+ S+L+   +L  L+   +LH             V   LI  Y+KCG+
Sbjct: 832  KMHGCNP-DAITIASLLSGCSQLGYLQFGERLHSYILRNKLEMEDFVGTALIHMYTKCGS 890

Query: 404  VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
            +  A  VF+ +G    + +WN +I GY   G    AL  Y +M E G  PD  T+L +L 
Sbjct: 891  IVHAERVFKSIG-KPCLATWNAMISGYSCYGFEHKALTCYSEMQEQGVEPDKITFLGVLA 949

Query: 464  ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
            AC H GL ++G   F  M +   + P+ +H  C+V LLAR G   +A      + +    
Sbjct: 950  ACTHGGLIHEGRRYFQIMTKVYDMVPTLQHCACMVGLLARVGLFEEALLFIKNMEKEPDS 1009

Query: 524  NIWRALLSGCVLH 536
             +W A LS C +H
Sbjct: 1010 AVWGAFLSACCIH 1022



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 110/382 (28%), Positives = 185/382 (48%), Gaps = 29/382 (7%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +DP   + L S Y K G ++ AE LF+E+ +K+VVSW+ +I  Y  NGF +++M  F  M
Sbjct: 576 LDPQVKNALTSMYAKCGDLEAAEYLFEEMMDKSVVSWNTMIGAYGQNGFFDEAMFVFKRM 635

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
           + +G+  +  T++ +  A A         SIH   +K GL  D                 
Sbjct: 636 IGAGVEVSQVTIMSLPSANAN------PESIHCYTIKVGLADDASVVTSLICMYARYGST 689

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                L+  L    LVS  AI+  +         +  F+      + P++V ML+++ G 
Sbjct: 690 DHAELLYWSLPQKNLVSLTAIITSYAEAGNLGLVMESFSQMHQLNMKPDSVAMLSILHGI 749

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
                  +  + HG  IK GL     V N ++ MYS   +++A   +F  M  K +ISW 
Sbjct: 750 ADPVHICIGHVFHGYAIKSGLDTFNLVTNGLISMYSKFNNVEALFGLFSGMHEKPLISWN 809

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++   V    A  A+++F +M+      D + + +L+S  + LG L+ G++LH+ ++  
Sbjct: 810 SVISGCVQAGRASHAIELFCQMKMHGCNPDAITIASLLSGCSQLGYLQFGERLHSYILRN 869

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
            L+ E  +  ++I MY+KCG +  +  VF  I +  L +W A+ISGY   G   +AL  +
Sbjct: 870 KLEMEDFVGTALIHMYTKCGSIVHAERVFKSIGKPCLATWNAMISGYSCYGFEHKALTCY 929

Query: 341 IKMRQEKTDSVDSITLVSILTA 362
            +M QE+    D IT + +L A
Sbjct: 930 SEM-QEQGVEPDKITFLGVLAA 950



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 103/390 (26%), Positives = 185/390 (47%), Gaps = 19/390 (4%)

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
           +G  +L +      I    IK G+   V V+ ++LD+Y  L  +  A   F  M  +DV+
Sbjct: 450 KGSNSLDANTEAIQIQNHLIKRGIDQFVYVSTALLDLYMKLGRVSYAHNAFDYMPIRDVV 509

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           SW  ++  +    Y   AL++F +M K         L+ L+     L  + +GK +H   
Sbjct: 510 SWNALICGYSRNGYDFSALELFVQMLKLGFCPRQTTLVGLLPSCGQLELVFQGKSIHGFG 569

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           +  GL  + ++ N++ +MY+KCGDL+++  +F ++ +KS+VSW  +I  Y QNG   EA+
Sbjct: 570 IKSGLHLDPQVKNALTSMYAKCGDLEAAEYLFEEMMDKSVVSWNTMIGAYGQNGFFDEAM 629

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
             F +M     + V  +T++S+ +A+    +      +H    + G     SV   LI  
Sbjct: 630 FVFKRMIGAGVE-VSQVTIMSLPSANANPES------IHCYTIKVGLADDASVVTSLICM 682

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           Y++ G+ D A +++  +   +++VS   II  Y   G+    +  + +M +    PDS  
Sbjct: 683 YARYGSTDHAELLYWSLP-QKNLVSLTAIITSYAEAGNLGLVMESFSQMHQLNMKPDSVA 741

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVD-LLARAGCLSDASGLAGK 516
            LSIL+     G+ +   +    +     +K   + +  V + L++     ++   L G 
Sbjct: 742 MLSILH-----GIADPVHICIGHVFHGYAIKSGLDTFNLVTNGLISMYSKFNNVEALFG- 795

Query: 517 LLEGM--GPNI-WRALLSGCVLHVGRFQDA 543
           L  GM   P I W +++SGCV   GR   A
Sbjct: 796 LFSGMHEKPLISWNSVISGCV-QAGRASHA 824


>gi|449443954|ref|XP_004139740.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g09040, mitochondrial-like [Cucumis sativus]
          Length = 1441

 Score =  255 bits (651), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 161/555 (29%), Positives = 276/555 (49%), Gaps = 26/555 (4%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y  S L++ Y K  K+  A+ +F+ + E+N+V W+ ++ G++ NG  ++ M+ FS M   
Sbjct: 345 YVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRH 404

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF----------------EG 109
           G  P+ FT   +  A A L  L     +H +M+K    S+LF                E 
Sbjct: 405 GPQPDEFTFTSIFSACASLHYLNFGGQLHTVMIKNKFASNLFVANALVDMYAKSGALKEA 464

Query: 110 LKNPYL------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
            K   L      VS NAI+ G++  +   +A  +F     +G++P+ V++ +++  C  +
Sbjct: 465 RKQFELMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANV 524

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
                 +  H L +K+GL       +S++DMY     + AA  +F  M  ++V+S   ++
Sbjct: 525 QELKRGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPSRNVVSVNALI 584

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV-LGGL 282
             +    +  +A+ +F+E++   +    V    L+        L  G+Q+H QV+  G L
Sbjct: 585 AGYT-MGHLEEAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGFL 643

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISGYVQNGCAREALNQFI 341
            S   +  S++ +Y        S ++F+++   K LV WTA+ISGY Q     +AL  + 
Sbjct: 644 SSSEMVCVSLLCLYMNSQRFVDSETLFSELQYPKGLVVWTALISGYAQQNHHEKALQFYQ 703

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
            MR +     D     S+L A   +++L+   ++H + F  GF       + LI  Y+KC
Sbjct: 704 HMRSDNILP-DQAAFASVLRACAGMSSLQNGQEIHSLIFHTGFNMDEVTCSSLIDMYAKC 762

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G+V  +  VF EM    +V+SWN++I G   NG+ E AL ++ +M +   +PD  T+L +
Sbjct: 763 GDVKGSLQVFREMPRRNNVISWNSMIVGLAKNGYAEEALEIFKQMEQQSIIPDEVTFLGV 822

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L+AC HAG  ++G  +F+ M+   K+ P  +H GC+VD+L R G L++A     KL    
Sbjct: 823 LSACSHAGRVSEGRKVFDLMVNNYKLLPRVDHLGCMVDILGRWGFLNEAEEFINKLGCKA 882

Query: 522 GPNIWRALLSGCVLH 536
            P +W  LL  C  H
Sbjct: 883 DPMLWSTLLGACRKH 897



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 131/475 (27%), Positives = 224/475 (47%), Gaps = 59/475 (12%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTM 74
           Y K G +  A+  F  + +K+V +W+ V+  Y  +G     +++F  M    + PN FT 
Sbjct: 86  YVKCGNVDFAQKAFSRLEKKDVFAWNSVLSMYLDHGLFATVVQSFVCMWNHEVRPNEFTF 145

Query: 75  VGVLVAAAGLQNLELARSIHGLMVK--FGLES-------DL-------------FEGLKN 112
             VL A +GLQ++   R +H  + K  FG  S       D+             F+G  N
Sbjct: 146 AMVLSACSGLQDVNFGRQVHCGVFKTGFGFRSFCQGGLIDMYAKCRYLRDARLVFDGALN 205

Query: 113 PYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELI 172
              VS  A++AG++ +    +AV +F+  +  G  P+ +T++TV+   VALG        
Sbjct: 206 LDTVSWTALIAGYVRDGFPMEAVKVFDRMQRVGHAPDQITLVTVVNAYVALGR------- 258

Query: 173 HGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYA 232
                                       L  A ++F ++   +V++W  M+       +A
Sbjct: 259 ----------------------------LADARKLFTQIPNPNVVAWNVMISGHAKRGFA 290

Query: 233 GDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSI 292
            +A+  F E++K+ +     +L +++S  A L  L  G  +HAQ    GL   + + +++
Sbjct: 291 EEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLNYGSMVHAQATKEGLDDNVYVGSAL 350

Query: 293 IAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVD 352
           + MY+KC  +D+++ VFN + E+++V W A++ G+ QNG A+E +  F  M++      D
Sbjct: 351 VNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQP-D 409

Query: 353 SITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFE 412
             T  SI +A   L  L    QLH +  +  F     V N L+  Y+K G +  A   FE
Sbjct: 410 EFTFTSIFSACASLHYLNFGGQLHTVMIKNKFASNLFVANALVDMYAKSGALKEARKQFE 469

Query: 413 EMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
            M  + D VSWN II GY    + + A  ++ +M   G +PD  +  SI++AC +
Sbjct: 470 LMK-IHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACAN 523



 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 147/522 (28%), Positives = 245/522 (46%), Gaps = 16/522 (3%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+  Y K   +++A  +FD     + VSW+ +I GY  +GF  +++K F  M   G  P+
Sbjct: 183 LIDMYAKCRYLRDARLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDRMQRVGHAPD 242

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKL 130
             T+V V+ A   L  L  AR              LF  + NP +V+ N +++G      
Sbjct: 243 QITLVTVVNAYVALGRLADARK-------------LFTQIPNPNVVAWNVMISGHAKRGF 289

Query: 131 FQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNS 190
            ++A+  F   + +GL     ++ +V+    +L       ++H    K GL  +V V ++
Sbjct: 290 AEEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLNYGSMVHAQATKEGLDDNVYVGSA 349

Query: 191 VLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICD 250
           +++MY+    +DAA Q+F  +  ++++ W  M+G F     A + ++ F  M++     D
Sbjct: 350 LVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPD 409

Query: 251 TVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFN 310
                ++ S  A L  L  G QLH  ++     S L ++N+++ MY+K G L  +R  F 
Sbjct: 410 EFTFTSIFSACASLHYLNFGGQLHTVMIKNKFASNLFVANALVDMYAKSGALKEARKQFE 469

Query: 311 QITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALE 370
            +     VSW AII GYVQ     EA   F +M        D ++L SI++A   +  L+
Sbjct: 470 LMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLP-DEVSLASIVSACANVQELK 528

Query: 371 ICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGY 430
              Q H +  + G        + LI  Y KCG V  A  VF  M   R+VVS N +I GY
Sbjct: 529 RGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMP-SRNVVSVNALIAGY 587

Query: 431 GVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPS 490
            + GH E A+ L+ ++   G  P   T+  +L+ C  A + N G  I  Q+++   +  S
Sbjct: 588 TM-GHLEEAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGFLSSS 646

Query: 491 QEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSG 532
           +     ++ L   +    D+  L  +L    G  +W AL+SG
Sbjct: 647 EMVCVSLLCLYMNSQRFVDSETLFSELQYPKGLVVWTALISG 688



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 124/493 (25%), Positives = 212/493 (43%), Gaps = 74/493 (15%)

Query: 23  EAENLFDEIPEK--NVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVA 80
           +A NLFDE P+     +S + VIH         KS+K                 +GV   
Sbjct: 41  QAHNLFDEKPKPVLQALSTAKVIH--------SKSLK-----------------IGV--- 72

Query: 81  AAGLQNLELARSIHGLMVKFG---LESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLL 137
             GL+ L L   I  L VK G        F  L+   + + N++++ ++++ LF   V  
Sbjct: 73  --GLKGL-LGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSMYLDHGLFATVVQS 129

Query: 138 FNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSC 197
           F       + PN  T   V+  C  L        +H    K G          ++DMY+ 
Sbjct: 130 FVCMWNHEVRPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTGFGFRSFCQGGLIDMYAK 189

Query: 198 LMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNL 257
              L  A  +F      D +SWT ++  +V   +  +A+K+F  M++     D + L+ +
Sbjct: 190 CRYLRDARLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDRMQRVGHAPDQITLVTV 249

Query: 258 ISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSL 317
           +                               N+ +A+    G L  +R +F QI   ++
Sbjct: 250 V-------------------------------NAYVAL----GRLADARKLFTQIPNPNV 274

Query: 318 VSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHG 377
           V+W  +ISG+ + G A EA++ F+++++    +  S +L S+L+A   L+ L     +H 
Sbjct: 275 VAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRS-SLGSVLSAIASLSMLNYGSMVHA 333

Query: 378 IAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGE 437
            A + G      V + L++ Y+KC  +D A  VF  +G  R++V WN ++ G+  NG  +
Sbjct: 334 QATKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLG-ERNIVLWNAMLGGFAQNGLAQ 392

Query: 438 TALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCV 497
             +  +  M   G  PD  T+ SI +AC      N G  +   MI +NK   +      +
Sbjct: 393 EVMEFFSCMKRHGPQPDEFTFTSIFSACASLHYLNFGGQLHTVMI-KNKFASNLFVANAL 451

Query: 498 VDLLARAGCLSDA 510
           VD+ A++G L +A
Sbjct: 452 VDMYAKSGALKEA 464


>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
 gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
          Length = 781

 Score =  254 bits (650), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 157/550 (28%), Positives = 283/550 (51%), Gaps = 27/550 (4%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+  Y + G + EA+ +F+ +  K+V +W+ +I  Y   G +++++  F  M    ++P 
Sbjct: 45  LIQMYAQCGSVPEAQQVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPT 104

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--------------------- 109
             T V +L A A  ++L+    IHG +++ G E D+F G                     
Sbjct: 105 KVTYVAILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFK 164

Query: 110 -LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            L++  +VS  A++A  + +  F  A  L+   +  G+VPN +T+ TV          + 
Sbjct: 165 RLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSE 224

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
            + ++GL     +  DV V NS ++M+     L  A ++F +M  +DV++W  ++ L+V 
Sbjct: 225 GKFVYGLVSSGVMESDVRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQ 284

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
            E  G+A+++F  +++  +  + +  + +++V   L  L +GK +H  V   G   +  +
Sbjct: 285 NENFGEAVRLFGRLQQDGVKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDAVV 344

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
           + +++++Y +C     +  +F  +  K +++WT +   Y QNG  +EAL  F +M+ E  
Sbjct: 345 ATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGR 404

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
               S TLV++L     LAAL+   Q+H    E  F     V+  LI+ Y KCG +  A 
Sbjct: 405 RPT-SATLVAVLDTCAHLAALQKGRQIHSHIIENRFRMEMVVETALINMYGKCGKMAEAM 463

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
            VFE+M   RD++ WN+++  Y  +G+ +  L L+++M   G   D+ +++S+L+A  H+
Sbjct: 464 SVFEKMA-KRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGVKADAVSFVSVLSALSHS 522

Query: 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN--IW 526
           G   DG   F  M+++  + P+ E YGCVVDLL RAG + +A  +  K L G  P+  +W
Sbjct: 523 GSVTDGYQYFVAMLQDFSITPTPELYGCVVDLLGRAGRIQEAVDIVLK-LSGCLPDGILW 581

Query: 527 RALLSGCVLH 536
             LL  C  H
Sbjct: 582 MTLLGACRTH 591



 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 123/522 (23%), Positives = 245/522 (46%), Gaps = 28/522 (5%)

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------L 106
           P++   V +L   +  +N++  R +H  +   G E +                      +
Sbjct: 2   PDTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQV 61

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           FE L+   + +   ++  +     + +A+ +F   +   ++P  VT + ++  C +  S 
Sbjct: 62  FEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESL 121

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
                IHG  ++ G   DV V  ++++MY+    +  A   F+ +E +DV+SWT M+   
Sbjct: 122 KDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAAC 181

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
           V  +    A  ++R M+   ++ + + L  + +       L  GK ++  V  G ++S++
Sbjct: 182 VQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVYGLVSSGVMESDV 241

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
           R+ NS + M+   G L  +R +F  + ++ +V+W  +I+ YVQN    EA+  F +++Q+
Sbjct: 242 RVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQD 301

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
              + D IT V +L     L +L     +H +  EAG+ R   V   L+S Y +C     
Sbjct: 302 GVKAND-ITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDAVVATALMSLYGRCEAPGQ 360

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           A+ +F +MG  +DV++W  +   Y  NG  + AL L+ +M   G  P S+T +++L+ C 
Sbjct: 361 AWKIFVDMGS-KDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCA 419

Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIW 526
           H      G  I + +I EN+ +        ++++  + G +++A  +  K+ +     +W
Sbjct: 420 HLAALQKGRQIHSHII-ENRFRMEMVVETALINMYGKCGKMAEAMSVFEKMAK-RDILVW 477

Query: 527 RALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFLNSTS 568
            ++L     H G + +   L +  Q  G +K   +SF++  S
Sbjct: 478 NSMLGAYAQH-GYYDETLQLFNQMQLDG-VKADAVSFVSVLS 517



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 121/510 (23%), Positives = 240/510 (47%), Gaps = 29/510 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L++ Y K G ++ A + F  +  ++VVSW+ +I     +     +   +  M 
Sbjct: 139 DVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQ 198

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
           L G++PN  T+  V  A      L   + ++GL+    +ESD                  
Sbjct: 199 LDGVVPNKITLYTVFNAYGDPNYLSEGKFVYGLVSSGVMESDVRVMNSAVNMFGNAGLLG 258

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               LFE + +  +V+ N ++  ++ N+ F +AV LF   +  G+  N +T + ++    
Sbjct: 259 DARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQDGVKANDITFVLMLNVYT 318

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
           +L S A  ++IH L  + G   D  V  +++ +Y        A +IF +M  KDVI+WT 
Sbjct: 319 SLTSLAKGKVIHELVKEAGYDRDAVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTV 378

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M   +    +  +AL++F+EM+       +  L+ ++   A L  L++G+Q+H+ ++   
Sbjct: 379 MCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENR 438

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
            + E+ +  ++I MY KCG +  + SVF ++ ++ ++ W +++  Y Q+G   E L  F 
Sbjct: 439 FRMEMVVETALINMYGKCGKMAEAMSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFN 498

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ--NCLISSYS 399
           +M+ +   + D+++ VS+L+A     ++    Q + +A    F    + +   C++    
Sbjct: 499 QMQLDGVKA-DAVSFVSVLSALSHSGSVTDGYQ-YFVAMLQDFSITPTPELYGCVVDLLG 556

Query: 400 KCGNVDLAY-IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
           + G +  A  IV +  G L D + W T++     +   + A A   ++ E  +   S  Y
Sbjct: 557 RAGRIQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAKAAAEQVLER-DPSHSGAY 615

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVK 488
           + + N    AG   DG+    +++    VK
Sbjct: 616 VVLSNVYAAAG-DWDGVNRMRKLMRSRGVK 644


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  254 bits (650), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 173/558 (31%), Positives = 280/558 (50%), Gaps = 32/558 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L++ Y K G ++ A  +F+ +  +N+VSW+ V++  S NG   +    F  ++
Sbjct: 229 DAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLL 288

Query: 64  LS---GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--------------- 105
           +S   GL+P+  TMV V+ A A +  + +   +HGL  K G+  +               
Sbjct: 289 ISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCG 348

Query: 106 -------LFEGLKNPYLVSCNAIVAGFINNKLFQQAV-LLFNFFRGSGLVPNAVTMLTVI 157
                  LF+      +VS N I+ G+     F+    LL    R   +  N VT+L V+
Sbjct: 349 YLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVL 408

Query: 158 RGCVALGSRALCEL--IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKD 215
             C   G   L  L  IHG   + G + D  V N+ +  Y+    LD A ++F  ME K 
Sbjct: 409 PACS--GEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKT 466

Query: 216 VISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
           V SW  ++G      + G +L +F  M  S +  D   + +L+   A L  L+ GK++H 
Sbjct: 467 VSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHG 526

Query: 276 QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
            ++  GL+ +  +  S++++Y +C  +   + +F+++  KSLV W  +I+G+ QN    E
Sbjct: 527 FMLRNGLELDEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCE 586

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLI 395
           AL+ F +M        + I +  +L A  +++AL +  ++H  A +A       V   LI
Sbjct: 587 ALDTFRQMLSGGIKPQE-IAVTGVLGACSQVSALRLGKEVHSFALKAHLSEDAFVTCALI 645

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
             Y+KCG ++ +  +F+ +   +D   WN II GYG++GHG  A+ L+  M   G  PDS
Sbjct: 646 DMYAKCGCMEQSQNIFDRVN-EKDEAVWNVIIAGYGIHGHGLKAIELFELMQNKGGRPDS 704

Query: 456 STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAG 515
            T+L +L AC HAGL  +GL    QM     VKP  EHY CVVD+L RAG L++A  L  
Sbjct: 705 FTFLGVLIACNHAGLVTEGLKYLGQMQNLYGVKPKLEHYACVVDMLGRAGQLTEALKLVN 764

Query: 516 KLLEGMGPNIWRALLSGC 533
           ++ +     IW +LLS C
Sbjct: 765 EMPDEPDSGIWSSLLSSC 782



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 148/559 (26%), Positives = 271/559 (48%), Gaps = 37/559 (6%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM-LSG 66
           S+++++ Y   G   ++  +FD   EK++  ++ ++ GYS N     ++  F  ++  + 
Sbjct: 131 STRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLELLSATD 190

Query: 67  LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--------------------- 105
           L P++FT+  V  A AG+ ++EL  ++H L +K G  SD                     
Sbjct: 191 LAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCGFVESAV 250

Query: 106 -LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFF---RGSGLVPNAVTMLTVIRGCV 161
            +FE ++N  LVS N+++     N  F +   +F         GLVP+  TM+TVI  C 
Sbjct: 251 KVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACA 310

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW-T 220
           A+G   +  ++HGL  KLG+  +V+VNNS++DMYS    L  A  +F     K+V+SW T
Sbjct: 311 AVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNT 370

Query: 221 RMMGLFVDFEYAGDALKIFREM-RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
            + G   + ++ G   ++ +EM R+ ++  + V +LN++   +    L   K++H     
Sbjct: 371 IIWGYSKEGDFRG-VFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFR 429

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G   +  ++N+ +A Y+KC  LD +  VF  +  K++ SW A+I  + QNG   ++L+ 
Sbjct: 430 HGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDL 489

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           F+ M     D  D  T+ S+L A   L  L    ++HG     G      +   L+S Y 
Sbjct: 490 FLVMMDSGMDP-DRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYI 548

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           +C ++ L  ++F++M   + +V WN +I G+  N     AL  + +M   G  P      
Sbjct: 549 QCSSMLLGKLIFDKMEN-KSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVT 607

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY--GCVVDLLARAGCLSDASGLAGKL 517
            +L AC        G  + +  +   K   S++ +    ++D+ A+ GC+  +  +  ++
Sbjct: 608 GVLGACSQVSALRLGKEVHSFAL---KAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDRV 664

Query: 518 LEGMGPNIWRALLSGCVLH 536
            E     +W  +++G  +H
Sbjct: 665 NE-KDEAVWNVIIAGYGIH 682



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 119/421 (28%), Positives = 214/421 (50%), Gaps = 31/421 (7%)

Query: 75  VGVLVAAAGL-QNLELARSIHGLM-VKFGLESDL----------------------FEGL 110
           +G+L+ A G  +N+ + R +H L+     L +D+                      F+  
Sbjct: 95  IGILLRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAA 154

Query: 111 KNPYLVSCNAIVAGFINNKLFQQAVLLF-NFFRGSGLVPNAVTMLTVIRGCVALGSRALC 169
           K   L   NA+++G+  N LF+ A+ LF      + L P+  T+  V + C  +    L 
Sbjct: 155 KEKDLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELG 214

Query: 170 ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDF 229
           E +H L +K G   D  V N+++ MY     +++A+++F  M  ++++SW  +M    + 
Sbjct: 215 EAVHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSEN 274

Query: 230 EYAGDALKIFREM---RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
              G+   +F+ +    +  ++ D   ++ +I   A +G+++ G  +H      G+  E+
Sbjct: 275 GGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEV 334

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            ++NS++ MYSKCG L  +R++F+    K++VSW  II GY + G  R       +M++E
Sbjct: 335 TVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQRE 394

Query: 347 KTDSVDSITLVSILTA-SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
           +   V+ +T++++L A SGE   L +  ++HG AF  GF +   V N  +++Y+KC ++D
Sbjct: 395 EKVRVNEVTVLNVLPACSGEHQLLSL-KEIHGYAFRHGFLKDELVANAFVAAYAKCSSLD 453

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            A  VF  M   + V SWN +I  +  NG    +L L+  M ++G  PD  T  S+L AC
Sbjct: 454 CAERVFCGMEG-KTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLAC 512

Query: 466 G 466
            
Sbjct: 513 A 513



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 128/522 (24%), Positives = 227/522 (43%), Gaps = 62/522 (11%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS-G 66
           ++ L+  Y K G + EA  LFD    KNVVSW+ +I GYS  G      +    M     
Sbjct: 337 NNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEK 396

Query: 67  LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--------------------- 105
           +  N  T++ VL A +G   L   + IHG   + G   D                     
Sbjct: 397 VRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAE 456

Query: 106 -LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
            +F G++   + S NA++     N    +++ LF     SG+ P+  T+ +++  C  L 
Sbjct: 457 RVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLK 516

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
                + IHG  ++ GL LD  +  S++ +Y     +     IF +ME K ++ W  M+ 
Sbjct: 517 FLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMIT 576

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            F   E   +AL  FR+M    I    +A+  ++   + +  L+ GK++H+  +   L  
Sbjct: 577 GFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSFALKAHLSE 636

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           +  ++ ++I MY+KCG ++ S+++F+++ EK    W  II+GY  +G   +A+  F ++ 
Sbjct: 637 DAFVTCALIDMYAKCGCMEQSQNIFDRVNEKDEAVWNVIIAGYGIHGHGLKAIELF-ELM 695

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
           Q K    DS T + +L A             H      G      +QN            
Sbjct: 696 QNKGGRPDSFTFLGVLIACN-----------HAGLVTEGLKYLGQMQNL----------- 733

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
                     G    +  +  ++   G  G    AL L ++M +    PDS  + S+L++
Sbjct: 734 ---------YGVKPKLEHYACVVDMLGRAGQLTEALKLVNEMPDE---PDSGIWSSLLSS 781

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQ-EHYGCVVDLLARAG 505
           C + G    G  +  +++E   ++P++ E+Y  + +L A  G
Sbjct: 782 CRNYGDLEIGEEVSKKLLE---LEPNKAENYVLLSNLYAGLG 820



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 94/307 (30%), Positives = 157/307 (51%), Gaps = 22/307 (7%)

Query: 270 GKQLHAQVVLG-GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYV 328
           G+++HA V     L++++ LS  IIAMYS CG    SR VF+   EK L  + A++SGY 
Sbjct: 111 GRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYS 170

Query: 329 QNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYR 388
           +N   R+A++ F+++      + D+ TL  +  A   +A +E+   +H +A +AG     
Sbjct: 171 RNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDA 230

Query: 389 SVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM-- 446
            V N LI+ Y KCG V+ A  VFE M   R++VSWN+++Y    NG       ++ ++  
Sbjct: 231 FVGNALIAMYGKCGFVESAVKVFETMRN-RNLVSWNSVMYACSENGGFGECCGVFKRLLI 289

Query: 447 -TETGEVPDSSTYLSILNACGHAGLTNDGLVIFN-----QMIEENKVKPSQEHYGCVVDL 500
             E G VPD +T ++++ AC   G    G+V+        + EE  V  S      +VD+
Sbjct: 290 SEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNS------LVDM 343

Query: 501 LARAGCLSDASGLAGKLLEGMGPNI--WRALLSGCVLHVGRFQDAEALRSGSQKKGIIKI 558
            ++ G L +A  L    + G G N+  W  ++ G     G F+    L    Q++  +++
Sbjct: 344 YSKCGYLGEARALFD--MNG-GKNVVSWNTIIWG-YSKEGDFRGVFELLQEMQREEKVRV 399

Query: 559 PGISFLN 565
             ++ LN
Sbjct: 400 NEVTVLN 406



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 103/238 (43%), Gaps = 35/238 (14%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +    L+S Y +   +   + +FD++  K++V W+++I G+S N    +++  F  M
Sbjct: 535 LDEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQM 594

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
           +  G+ P    + GVL A + +  L L + +H   +K  L  D                 
Sbjct: 595 LSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKCGCM 654

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +F+ +        N I+AG+  +    +A+ LF   +  G  P++ T L V+  C
Sbjct: 655 EQSQNIFDRVNEKDEAVWNVIIAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLGVLIAC 714

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMD-------LDAAIQIFREM 211
              G      +  GL   LG + ++      L+ Y+C++D       L  A+++  EM
Sbjct: 715 NHAGL-----VTEGLKY-LGQMQNLYGVKPKLEHYACVVDMLGRAGQLTEALKLVNEM 766


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  254 bits (650), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 155/559 (27%), Positives = 275/559 (49%), Gaps = 57/559 (10%)

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------- 105
           M+L G    S    G+L   A L++LE  R +H  ++K G++ +                
Sbjct: 87  MILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGS 146

Query: 106 ------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                 +F+G+++  +VS  A++  F+      +A   +   + +G  P+ VT ++++  
Sbjct: 147 LTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNA 206

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
                   + + +H    K GL L+  V  S++ MY+   D+  A  IF ++  K+V++W
Sbjct: 207 FTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTW 266

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           T ++  +        AL++  +M+++ +  + +   +++        L+ GK++H  ++ 
Sbjct: 267 TLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQ 326

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G   E+ + N++I MY KCG L  +R +F  +  + +V+WTA+++GY Q G   EA++ 
Sbjct: 327 SGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDL 386

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           F +M+Q+     D +T  S LT+    A L+    +H     AG+     +Q+ L+S Y+
Sbjct: 387 FRRMQQQGIKP-DKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYA 445

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           KCG++D A +VF +M   R+VV+W  +I G   +G    AL  + +M + G  PD  T+ 
Sbjct: 446 KCGSMDDARLVFNQMS-ERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFT 504

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519
           S+L+AC H GL  +G   F  M  +  +KP  EHY C VDLL RAG L +A  +   +  
Sbjct: 505 SVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILTMPF 564

Query: 520 GMGPNIWRALLSGCVLH---------------------------------VGRFQDAEAL 546
             GP++W ALLS C +H                                  GR++DAE +
Sbjct: 565 QPGPSVWGALLSACRIHSDVERGERAAENVLKLDPDDDGAYVALSNIYAAAGRYEDAEKV 624

Query: 547 RSGSQKKGIIKIPGISFLN 565
           R   +K+ ++K PG S++ 
Sbjct: 625 RQVMEKRDVVKEPGQSWIE 643



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 127/513 (24%), Positives = 248/513 (48%), Gaps = 32/513 (6%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y  + LLS Y K G + +A  +FD I ++N+VSW+ +I  +     + ++ K +  M L+
Sbjct: 132 YLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLA 191

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-------------------- 105
           G  P+  T V +L A    + L++ + +H  + K GLE +                    
Sbjct: 192 GCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKA 251

Query: 106 --LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
             +F+ L    +V+   ++AG+        A+ L    + + + PN +T  ++++GC   
Sbjct: 252 QVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTP 311

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
            +    + +H   I+ G   ++ V N+++ MY     L  A ++F ++  +DV++WT M+
Sbjct: 312 LALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMV 371

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
             +    +  +A+ +FR M++  I  D +   + ++  +    L+ GK +H Q+V  G  
Sbjct: 372 TGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYS 431

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
            ++ L +++++MY+KCG +D +R VFNQ++E+++V+WTA+I+G  Q+G  REAL  F +M
Sbjct: 432 LDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQM 491

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQ-LHGIAFEAGFPRYRSVQNCLISSYSKCG 402
           +++     D +T  S+L+A   +  +E   +    +  + G        +C +    + G
Sbjct: 492 KKQGIKP-DKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAG 550

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNG---HGETALALYHKMTETGEVPDSSTYL 459
           +++ A  V   M F      W  ++    ++     GE A     K+    +  D   Y+
Sbjct: 551 HLEEAENVILTMPFQPGPSVWGALLSACRIHSDVERGERAAENVLKL----DPDDDGAYV 606

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVK-PSQ 491
           ++ N    AG   D   +   M + + VK P Q
Sbjct: 607 ALSNIYAAAGRYEDAEKVRQVMEKRDVVKEPGQ 639



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 123/436 (28%), Positives = 220/436 (50%), Gaps = 25/436 (5%)

Query: 124 GFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLIL 183
           G +N  + Q   +  + FRG            +++ C  L S      +H   +K G+  
Sbjct: 82  GILNTMILQGTRVYSDVFRG------------LLQECARLRSLEQGREVHAAILKSGIQP 129

Query: 184 DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMR 243
           +  + N++L MY+    L  A ++F  +  ++++SWT M+  FV      +A K +  M+
Sbjct: 130 NRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMK 189

Query: 244 KSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLD 303
            +    D V  ++L++       L+ G+++H ++   GL+ E R+  S++ MY+KCGD+ 
Sbjct: 190 LAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDIS 249

Query: 304 SSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTAS 363
            ++ +F+++ EK++V+WT +I+GY Q G    AL    KM+Q +  + + IT  SIL   
Sbjct: 250 KAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEV-APNKITYTSILQGC 308

Query: 364 GELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSW 423
               ALE   ++H    ++G+ R   V N LI+ Y KCG +  A  +F ++   RDVV+W
Sbjct: 309 TTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPH-RDVVTW 367

Query: 424 NTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIE 483
             ++ GY   G  + A+ L+ +M + G  PD  T+ S L +C       +G  I  Q++ 
Sbjct: 368 TAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVH 427

Query: 484 ENKVKPSQEHY--GCVVDLLARAGCLSDASGLAGKLLEGMGPNI--WRALLSGCVLHVGR 539
                 S + Y    +V + A+ G + DA  +  ++ E    N+  W A+++GC  H GR
Sbjct: 428 AGY---SLDVYLQSALVSMYAKCGSMDDARLVFNQMSER---NVVAWTAMITGCAQH-GR 480

Query: 540 FQDAEALRSGSQKKGI 555
            ++A       +K+GI
Sbjct: 481 CREALEYFEQMKKQGI 496



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 164/348 (47%), Gaps = 24/348 (6%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           ++P   + L+  Y K G I +A+ +FD++PEKNVV+W+++I GY+  G  + +++    M
Sbjct: 230 LEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKM 289

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK--FGLE----------------- 103
             + + PN  T   +L        LE  + +H  +++  +G E                 
Sbjct: 290 QQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGL 349

Query: 104 ---SDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                LF  L +  +V+  A+V G+       +A+ LF   +  G+ P+ +T  + +  C
Sbjct: 350 KEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSC 409

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
            +       + IH   +  G  LDV + ++++ MY+    +D A  +F +M  ++V++WT
Sbjct: 410 SSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWT 469

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+          +AL+ F +M+K  I  D V   +++S    +G ++ G++    + L 
Sbjct: 470 AMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLD 529

Query: 281 -GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVS-WTAIISG 326
            G++  +   +  + +  + G L+ + +V   +  +   S W A++S 
Sbjct: 530 YGIKPMVEHYSCFVDLLGRAGHLEEAENVILTMPFQPGPSVWGALLSA 577


>gi|255560101|ref|XP_002521068.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539637|gb|EEF41219.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 579

 Score =  254 bits (650), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 160/499 (32%), Positives = 265/499 (53%), Gaps = 21/499 (4%)

Query: 62  MMLSGLLPNSFTMVGVLVAAAG-LQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNA 120
           ++ +GL  N    +  L+A+ G + N+  AR++             FE +    + + N+
Sbjct: 8   ILTTGLFFNDANSIAQLIASYGRINNIIPARNV-------------FEKMPQRSINAWNS 54

Query: 121 IVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLG 180
           ++  +       + + L+      G+ P++ T    ++ C +L    + E+I    +  G
Sbjct: 55  MIIAYSRTNYPDEVLNLYYRMISEGIKPDSSTFTVTLKACSSLMDLDMGEIIWNQAVDFG 114

Query: 181 LILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFR 240
              DV V +SVL++Y+    +D A  +F +M  +DV+SWT M+  F       DA+ I+R
Sbjct: 115 YGFDVFVVSSVLNLYAKSGKMDKAKIVFDKMVKRDVVSWTTMITGFAQSGRPLDAIDIYR 174

Query: 241 EMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCG 300
            M+K R   D V ++ LI     LGD K G  +H  +V   +  +  L  S+I MY+K G
Sbjct: 175 TMQKERTEGDGVVMVGLIQACTSLGDSKFGLSVHGHMVRREMNMDNVLQTSLIDMYAKNG 234

Query: 301 DLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSIL 360
            L+ +  VF  I  KS++SW A+ISG+ QNG A + L   ++M Q      D ++L+S L
Sbjct: 235 KLELASRVFEGIPYKSVISWGALISGFAQNGFANKTLASLVEM-QNSGFKPDLVSLISSL 293

Query: 361 TASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDV 420
           +A  ++  L++   LHG   +  +    S    LI  Y+KCG +  A  +F+++   RD+
Sbjct: 294 SACAQVGNLKVGKSLHGHIVKRLYLDKVS-GTALIDMYAKCGALTFARALFDQIE-PRDL 351

Query: 421 VSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQ 480
           + WN +I  YG++G G  AL+L+ KM ET   PD +T+ S+L+AC H+GL  +G   F+ 
Sbjct: 352 ILWNAMISSYGIHGDGIEALSLFLKMKETNITPDHATFASLLSACSHSGLVEEGQYWFHV 411

Query: 481 MIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH---- 536
           +I+++K++PS++HY C+VDLL+RAG + +A  L   +    G  IW ALLSGC+ H    
Sbjct: 412 LIDKSKIQPSEKHYACMVDLLSRAGQVEEAYQLIESMHIKPGLAIWVALLSGCLNHKNLL 471

Query: 537 VGRFQDAEALRSGSQKKGI 555
           +G     + L S     GI
Sbjct: 472 IGEMVAKKILESNPDDLGI 490



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 117/449 (26%), Positives = 216/449 (48%), Gaps = 25/449 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D  + ++L+++Y +   I  A N+F+++P++++ +W+ +I  YS   + ++ +  +  M+
Sbjct: 17  DANSIAQLIASYGRINNIIPARNVFEKMPQRSINAWNSMIIAYSRTNYPDEVLNLYYRMI 76

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY------- 114
             G+ P+S T    L A + L +L++   I    V FG   D+F    + N Y       
Sbjct: 77  SEGIKPDSSTFTVTLKACSSLMDLDMGEIIWNQAVDFGYGFDVFVVSSVLNLYAKSGKMD 136

Query: 115 -------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                        +VS   ++ GF  +     A+ ++   +      + V M+ +I+ C 
Sbjct: 137 KAKIVFDKMVKRDVVSWTTMITGFAQSGRPLDAIDIYRTMQKERTEGDGVVMVGLIQACT 196

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
           +LG       +HG  ++  + +D  +  S++DMY+    L+ A ++F  +  K VISW  
Sbjct: 197 SLGDSKFGLSVHGHMVRREMNMDNVLQTSLIDMYAKNGKLELASRVFEGIPYKSVISWGA 256

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++  F    +A   L    EM+ S    D V+L++ +S  A +G+LK GK LH  +V   
Sbjct: 257 LISGFAQNGFANKTLASLVEMQNSGFKPDLVSLISSLSACAQVGNLKVGKSLHGHIV-KR 315

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           L  +     ++I MY+KCG L  +R++F+QI  + L+ W A+IS Y  +G   EAL+ F+
Sbjct: 316 LYLDKVSGTALIDMYAKCGALTFARALFDQIEPRDLILWNAMISSYGIHGDGIEALSLFL 375

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEI-CLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
           KM+ E   + D  T  S+L+A      +E      H +  ++          C++   S+
Sbjct: 376 KMK-ETNITPDHATFASLLSACSHSGLVEEGQYWFHVLIDKSKIQPSEKHYACMVDLLSR 434

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYG 429
            G V+ AY + E M     +  W  ++ G
Sbjct: 435 AGQVEEAYQLIESMHIKPGLAIWVALLSG 463


>gi|413938252|gb|AFW72803.1| hypothetical protein ZEAMMB73_565260 [Zea mays]
          Length = 709

 Score =  254 bits (649), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 179/627 (28%), Positives = 302/627 (48%), Gaps = 100/627 (15%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSG- 66
           ++ LL  Y + G +  A  L DE+P ++  +++ +I  +   G    +++AF  M+  G 
Sbjct: 65  ANSLLHAYLQCGLLSRALRLLDEMPRRDAATYAPLISAHCRLGAPLDALRAFLDMLAWGC 124

Query: 67  ---------LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFE--------- 108
                    + PN FT   V+ A    ++  LAR +HG +V  G   D F          
Sbjct: 125 SDEEGVDDVVRPNEFTAAAVVQACGLARDERLARMVHGYLVAGGFCDDPFVLGSLVNMYA 184

Query: 109 -------------GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLT 155
                        GL    +VS  AIV+G + N + ++A+ +F      G++PN VTML+
Sbjct: 185 KVGDVASARRLLLGLPCRDVVSWTAIVSGCVLNAMLEEALGVFLMMLEDGVLPNNVTMLS 244

Query: 156 VIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKD 215
           VI+ C  +G+  L   +H L + L L  D SV NS++ MY+    ++ AI++F+      
Sbjct: 245 VIQACALMGASELFGPVHALVVLLELEHDASVVNSLIMMYAKNGFVEEAIRLFK------ 298

Query: 216 VISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVN-AILGDLKRGKQLH 274
                   G ++                K+  +C    +L  +     I G +K G+ LH
Sbjct: 299 --------GFYL----------------KTGSVCSNEDVLAAVLYGCTISGSVKNGEGLH 334

Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
           A  +  G    + + NS++ MY++   +D++  VF  +  K +VSW  IIS   +     
Sbjct: 335 AHTIKMGAFPSISVENSLMGMYARFEQIDAALLVFEGMEVKDIVSWNTIISCLAKTDRVN 394

Query: 335 EALNQFIKMRQEKTDSV--DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN 392
           EA++ F  +       +  D +T++S+L A      L     LHG   ++GF    S+ N
Sbjct: 395 EAMDIFSVLHAAAGGGLAPDFVTVLSMLQACSNAGLLHQGQMLHGYVMKSGFVYDVSICN 454

Query: 393 CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG-E 451
            LIS Y+K G +D A ++FE M  ++D+VSWN++I  YG++G G +AL ++H++ + G  
Sbjct: 455 ALISMYAKLGRIDFAEMIFERMD-IKDLVSWNSMINAYGMHGDGHSALRVFHQLKDAGTP 513

Query: 452 VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDAS 511
            P++ T++S+++AC H+GL ++G   F  M  ++ ++PS +HY CVVDLL R+G  ++A 
Sbjct: 514 APNAITFVSVISACSHSGLVSEGHKCFESMGRDHGIEPSMDHYACVVDLLGRSGRFAEAE 573

Query: 512 GL-------------------------------AGKLLEGMGP--NIWRALLSGCVLHVG 538
                                            A K L  + P  +IWR  LS     VG
Sbjct: 574 QFIRDMPVRPDSTIWGPLLAACQLHGNVDLAEKAAKELSALEPESDIWRVSLSNTYASVG 633

Query: 539 RFQDAEALRSGSQKKGIIKIPGISFLN 565
           R++DA  +RS  ++ G+ K  G SF++
Sbjct: 634 RWRDAAKIRSEMRRVGLRKETGWSFVD 660



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 144/325 (44%), Gaps = 35/325 (10%)

Query: 266 DLKRGKQLHAQVVLGGL----QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWT 321
           D      LHA ++  G     Q+ L  +NS++  Y +CG L  +  + +++  +   ++ 
Sbjct: 38  DTALTSALHAALLKSGALRSRQAPLAAANSLLHAYLQCGLLSRALRLLDEMPRRDAATYA 97

Query: 322 AIISGYVQNGCAREALNQFIKM------RQEKTDSV---DSITLVSILTASGELAALEIC 372
            +IS + + G   +AL  F+ M       +E  D V   +  T  +++ A G      + 
Sbjct: 98  PLISAHCRLGAPLDALRAFLDMLAWGCSDEEGVDDVVRPNEFTAAAVVQACGLARDERLA 157

Query: 373 LQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGF-LRDVVSWNTIIYGYG 431
             +HG     GF     V   L++ Y+K G+V  A  +   +G   RDVVSW  I+ G  
Sbjct: 158 RMVHGYLVAGGFCDDPFVLGSLVNMYAKVGDVASARRLL--LGLPCRDVVSWTAIVSGCV 215

Query: 432 VNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTN-----DGLVIFNQMIEENK 486
           +N   E AL ++  M E G +P++ T LS++ AC   G +        LV+  ++  +  
Sbjct: 216 LNAMLEEALGVFLMMLEDGVLPNNVTMLSVIQACALMGASELFGPVHALVVLLELEHDAS 275

Query: 487 VKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP-----NIWRALLSGCVLHVGRFQ 541
           V  S      ++ + A+ G + +A  L        G      ++  A+L GC +  G  +
Sbjct: 276 VVNS------LIMMYAKNGFVEEAIRLFKGFYLKTGSVCSNEDVLAAVLYGCTIS-GSVK 328

Query: 542 DAEALRSGSQKKGIIKIPGISFLNS 566
           + E L + + K G    P IS  NS
Sbjct: 329 NGEGLHAHTIKMG--AFPSISVENS 351


>gi|357440905|ref|XP_003590730.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479778|gb|AES60981.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 627

 Score =  254 bits (649), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 157/504 (31%), Positives = 269/504 (53%), Gaps = 48/504 (9%)

Query: 111 KNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCE 170
           KN YL   N+++ G++ N  F  A++LF    G  L+P+  T+ T+ +    +    L +
Sbjct: 90  KNVYL--WNSLINGYVKNHQFDNAIVLFRQM-GRCLLPDDYTLATISKVSGEIQDLVLGK 146

Query: 171 LIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV------ISWTRMMG 224
           LIHG ++++G + D+ V NSV+ MY    +   A+++F EM  ++V      IS    +G
Sbjct: 147 LIHGKSLRIGFVSDIVVGNSVMSMYIRCREFGDAMKVFDEMPQRNVGSFNVIISGCAALG 206

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAIL-GDLKRGKQLHAQVVLGGLQ 283
             +D+    D    FR M+      D   + +L+ +     G    G++LH  +V  GL 
Sbjct: 207 -NLDYSLYADLWNFFRRMQCQGYNADAFTVASLLPMCCDSDGKFDHGRELHCYLVKNGLD 265

Query: 284 ----SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
               S++ + +S+I MYS+   L  SR VF+Q+  +++  WTA+I+GYVQNG    AL  
Sbjct: 266 LKMCSDVHMGSSLIDMYSRSNKLVLSRRVFDQMKSRNIYVWTAMINGYVQNGAPEGALIL 325

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           F +M+++     + ++LVS+L A G L  L    Q+H  + +  F  Y S++N LI  Y+
Sbjct: 326 FREMQRKDRIRPNRVSLVSVLPACGLLVGLMGGKQVHAFSIKMEFNDYISLRNALIDMYA 385

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           KCG++D A  VF+   + +D ++W++II  YG++G G+ AL  Y++M + G  PD  T +
Sbjct: 386 KCGSLDYARRVFDNGSYSKDAITWSSIISAYGLHGKGQEALTTYYEMLQQGIKPDMITVV 445

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519
            +L+AC  +GL ++G+ I+N +  E ++KPS E  GCVVDLL R+G L  A     ++  
Sbjct: 446 GVLSACCRSGLVDEGISIYNSLTTEYEMKPSVEICGCVVDLLGRSGQLDQALDFIREMPI 505

Query: 520 GMGPNIWRALLSGCVLH---------------------------------VGRFQDAEAL 546
             GP++W +LL+  V+H                                   R+ +   +
Sbjct: 506 IPGPSVWGSLLTASVIHGNSMTRDLAYRCLLELEPENPSNYISLSNTYASSRRWDEITEV 565

Query: 547 RSGSQKKGIIKIPGISFLNSTSRD 570
           RS  +++G+ K+PGIS++  + ++
Sbjct: 566 RSMMKERGLRKVPGISWITISDKN 589



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 132/492 (26%), Positives = 236/492 (47%), Gaps = 38/492 (7%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           +++L+S Y   G    ++ +FD +  KNV  W+ +I+GY  N   + ++  F  M    L
Sbjct: 64  TTRLISAYATFGDSIMSKLVFDSVHTKNVYLWNSLINGYVKNHQFDNAIVLFRQMG-RCL 122

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL--------------------- 106
           LP+ +T+  +   +  +Q+L L + IHG  ++ G  SD+                     
Sbjct: 123 LPDDYTLATISKVSGEIQDLVLGKLIHGKSLRIGFVSDIVVGNSVMSMYIRCREFGDAMK 182

Query: 107 -FEGLKNPYLVSCNAIVAG--FINNKLFQQAVLLFNFFRG---SGLVPNAVTMLTVIRGC 160
            F+ +    + S N I++G   + N  +     L+NFFR     G   +A T+ +++  C
Sbjct: 183 VFDEMPQRNVGSFNVIISGCAALGNLDYSLYADLWNFFRRMQCQGYNADAFTVASLLPMC 242

Query: 161 V-ALGSRALCELIHGLTIKLGLIL----DVSVNNSVLDMYSCLMDLDAAIQIFREMECKD 215
             + G       +H   +K GL L    DV + +S++DMYS    L  + ++F +M+ ++
Sbjct: 243 CDSDGKFDHGRELHCYLVKNGLDLKMCSDVHMGSSLIDMYSRSNKLVLSRRVFDQMKSRN 302

Query: 216 VISWTRMMGLFVDFEYAGDALKIFREM-RKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
           +  WT M+  +V       AL +FREM RK RI  + V+L++++    +L  L  GKQ+H
Sbjct: 303 IYVWTAMINGYVQNGAPEGALILFREMQRKDRIRPNRVSLVSVLPACGLLVGLMGGKQVH 362

Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVF-NQITEKSLVSWTAIISGYVQNGCA 333
           A  +       + L N++I MY+KCG LD +R VF N    K  ++W++IIS Y  +G  
Sbjct: 363 AFSIKMEFNDYISLRNALIDMYAKCGSLDYARRVFDNGSYSKDAITWSSIISAYGLHGKG 422

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLH-GIAFEAGFPRYRSVQN 392
           +EAL  + +M Q+     D IT+V +L+A      ++  + ++  +  E        +  
Sbjct: 423 QEALTTYYEMLQQGIKP-DMITVVGVLSACCRSGLVDEGISIYNSLTTEYEMKPSVEICG 481

Query: 393 CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV 452
           C++    + G +D A     EM  +     W +++    ++G+  T    Y  + E  E 
Sbjct: 482 CVVDLLGRSGQLDQALDFIREMPIIPGPSVWGSLLTASVIHGNSMTRDLAYRCLLEL-EP 540

Query: 453 PDSSTYLSILNA 464
            + S Y+S+ N 
Sbjct: 541 ENPSNYISLSNT 552



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 155/324 (47%), Gaps = 20/324 (6%)

Query: 254 LLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT 313
           LL+L+ ++  L  LK  +Q H+Q++         L+  +I+ Y+  GD   S+ VF+ + 
Sbjct: 29  LLHLLQLSIDLHSLKLTQQCHSQILTNCFSQNAFLTTRLISAYATFGDSIMSKLVFDSVH 88

Query: 314 EKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICL 373
            K++  W ++I+GYV+N     A+  F +M   +    D  TL +I   SGE+  L +  
Sbjct: 89  TKNVYLWNSLINGYVKNHQFDNAIVLFRQM--GRCLLPDDYTLATISKVSGEIQDLVLGK 146

Query: 374 QLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVN 433
            +HG +   GF     V N ++S Y +C     A  VF+EM   R+V S+N II G    
Sbjct: 147 LIHGKSLRIGFVSDIVVGNSVMSMYIRCREFGDAMKVFDEMP-QRNVGSFNVIISGCAAL 205

Query: 434 GHGETALA-----LYHKMTETGEVPDSSTYLSILNACGHA-GLTNDGLVIFNQMIEE--N 485
           G+ + +L       + +M   G   D+ T  S+L  C  + G  + G  +   +++   +
Sbjct: 206 GNLDYSLYADLWNFFRRMQCQGYNADAFTVASLLPMCCDSDGKFDHGRELHCYLVKNGLD 265

Query: 486 KVKPSQEHYG-CVVDLLARAGCLSDASGLAGKLLEGMGPN---IWRALLSGCVLHVGRFQ 541
               S  H G  ++D+ +R+  L     L+ ++ + M      +W A+++G V + G  +
Sbjct: 266 LKMCSDVHMGSSLIDMYSRSNKLV----LSRRVFDQMKSRNIYVWTAMINGYVQN-GAPE 320

Query: 542 DAEALRSGSQKKGIIKIPGISFLN 565
            A  L    Q+K  I+   +S ++
Sbjct: 321 GALILFREMQRKDRIRPNRVSLVS 344



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/237 (21%), Positives = 103/237 (43%), Gaps = 29/237 (12%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C D +  S L+  Y +S K+  +  +FD++  +N+  W+ +I+GY  NG  E ++  F  
Sbjct: 269 CSDVHMGSSLIDMYSRSNKLVLSRRVFDQMKSRNIYVWTAMINGYVQNGAPEGALILFRE 328

Query: 62  MMLSG-LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYL----- 115
           M     + PN  ++V VL A   L  L   + +H   +K  +E + +  L+N  +     
Sbjct: 329 MQRKDRIRPNRVSLVSVLPACGLLVGLMGGKQVHAFSIK--MEFNDYISLRNALIDMYAK 386

Query: 116 --------------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLT 155
                               ++ ++I++ +  +   Q+A+  +      G+ P+ +T++ 
Sbjct: 387 CGSLDYARRVFDNGSYSKDAITWSSIISAYGLHGKGQEALTTYYEMLQQGIKPDMITVVG 446

Query: 156 VIRGCVALG-SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM 211
           V+  C   G       + + LT +  +   V +   V+D+      LD A+   REM
Sbjct: 447 VLSACCRSGLVDEGISIYNSLTTEYEMKPSVEICGCVVDLLGRSGQLDQALDFIREM 503


>gi|147789959|emb|CAN73858.1| hypothetical protein VITISV_024322 [Vitis vinifera]
          Length = 1539

 Score =  254 bits (648), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 179/569 (31%), Positives = 288/569 (50%), Gaps = 39/569 (6%)

Query: 4    DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
            D Y  S L+S + + G   +A+N+F+++  +NVVS + ++ G       E + K F  M 
Sbjct: 789  DLYVGSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMK 848

Query: 64   -LSGLLPNSFTMVGVLVAAAGLQNLE----LARSIHGLMVKFGLESD---LFEGLKNPYL 115
             L G+  NS + V +L A +    LE      R +H  +++ GL  +   +  GL N Y 
Sbjct: 849  DLVGI--NSDSYVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYA 906

Query: 116  --------------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLT 155
                                VS N++++G   N+  + A   F   R +G +P+  T+++
Sbjct: 907  KSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFLRMRRTGSMPSNFTLIS 966

Query: 156  VIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKD 215
             +  C +LG   L E IH   +KLGL  DVSV+N++L +Y+        +++F  M   D
Sbjct: 967  TLSSCASLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKVFSLMPEYD 1026

Query: 216  VISWTRMMGLFVDFEYA-GDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
             +SW  ++G   D E +   A+K F EM +       V  +N++S  + L   +   Q+H
Sbjct: 1027 QVSWNSVIGALSDSEASVSQAVKYFLEMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIH 1086

Query: 275  AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE-KSLVSWTAIISGYVQNGCA 333
            A V+   L  +  + N++++ Y KCG+++    +F +++E +  VSW ++ISGY+ N   
Sbjct: 1087 ALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELL 1146

Query: 334  REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC 393
             +A++    M Q K   +DS T  ++L+A   +A LE  +++H     A       V + 
Sbjct: 1147 HKAMDLVWFMMQ-KGQRLDSFTFATVLSACASVATLERGMEVHACGIRACMESDVVVGSA 1205

Query: 394  LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
            L+  YSKCG +D A   FE M  LR+V SWN++I GY  +GHGE AL L+ +M   G+ P
Sbjct: 1206 LVDMYSKCGRIDYASRFFELMP-LRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPP 1264

Query: 454  DS-STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASG 512
            D  +  L +L+AC H G   +G   F  M E  ++ P  EH+ C+VDLL RAG L +   
Sbjct: 1265 DHVAPLLGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGD 1324

Query: 513  LAGKLLEGMGPN--IWRALLSGCVLHVGR 539
                +   M PN  IWR +L  C    GR
Sbjct: 1325 FINSM--PMKPNVLIWRTVLGACCRANGR 1351



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 141/552 (25%), Positives = 257/552 (46%), Gaps = 46/552 (8%)

Query: 23   EAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL----LPNSFTMVGVL 78
            +A ++FD I  +N +SW+ +I  YS  G    +   FS M   GL     PN +T   ++
Sbjct: 701  DARSVFDRIGIRNSISWNSIISVYSRRGDXVSAYDLFSSMQKEGLGFSFKPNEYTFGSLI 760

Query: 79   VAAAG---------------------LQNLELARSIHGLMVKFGLESD---LFEGLKNPY 114
             AA                       LQ+L +  ++     +FGL  D   +FE +    
Sbjct: 761  TAACSSVDFGLCVLEQMLARVEKSGFLQDLYVGSALVSGFARFGLTDDAKNIFEQMGVRN 820

Query: 115  LVSCNAIVAGFINNKLFQQAVLLFNFFRG-SGLVPNA-VTMLTVIRGCVAL--GSRALCE 170
            +VS N ++ G +  K  + A  +F+  +   G+  ++ V +L+       L  G R   E
Sbjct: 821  VVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSDSYVVLLSAFSEFSVLEEGRRKGRE 880

Query: 171  LIHGLTIKLGLILD-VSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDF 229
             +H   I+ GL  + V++ N +++MY+    +  A  +F  M  KD +SW  ++      
Sbjct: 881  -VHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQN 939

Query: 230  EYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLS 289
            E + DA + F  MR++  +     L++ +S  A LG +  G+Q+H   +  GL +++ +S
Sbjct: 940  ECSEDAAESFLRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVSVS 999

Query: 290  NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN-GCAREALNQFIKMRQEKT 348
            N+++A+Y++ G       VF+ + E   VSW ++I     +     +A+  F++M +   
Sbjct: 1000 NALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLEMMRGGW 1059

Query: 349  DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
              +  +T ++IL+A   L+  E+  Q+H +  +       ++ N L+S Y KCG ++   
Sbjct: 1060 -GLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECE 1118

Query: 409  IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
             +F  M   RD VSWN++I GY  N     A+ L   M + G+  DS T+ ++L+AC   
Sbjct: 1119 KIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATVLSACASV 1178

Query: 469  GLTNDGLVI----FNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
                 G+ +        +E + V  S      +VD+ ++ G +  AS    +L+      
Sbjct: 1179 ATLERGMEVHACGIRACMESDVVVGS-----ALVDMYSKCGRIDYASRFF-ELMPLRNVY 1232

Query: 525  IWRALLSGCVLH 536
             W +++SG   H
Sbjct: 1233 SWNSMISGYARH 1244



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 133/458 (29%), Positives = 227/458 (49%), Gaps = 43/458 (9%)

Query: 8    SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
            S+ L++ Y + G +  A+ LFDE+  +N+V+W+ +I GY+ NG  +++   F  M+ +G 
Sbjct: 582  SNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGF 641

Query: 68   LPNSFTMVGVLVAA--AGLQNLELARSIHGLMVKFGLESD-------------------- 105
            +PN +     L A   +G    +L   IHGL+ K    SD                    
Sbjct: 642  IPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSAND 701

Query: 106  ---LFE--GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGL----VPNAVTMLTV 156
               +F+  G++N   +S N+I++ +        A  LF+  +  GL     PN  T  ++
Sbjct: 702  ARSVFDRIGIRNS--ISWNSIISVYSRRGDXVSAYDLFSSMQKEGLGFSFKPNEYTFGSL 759

Query: 157  IRGCVALGSRALCELIHGLTI--KLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
            I    +     LC L   L    K G + D+ V ++++  ++     D A  IF +M  +
Sbjct: 760  ITAACSSVDFGLCVLEQMLARVEKSGFLQDLYVGSALVSGFARFGLTDDAKNIFEQMGVR 819

Query: 215  DVISWTRMMGLFVDFEYAGDALKIFREMRK-SRIICDT-VALLNLISVNAILGDLKR-GK 271
            +V+S   +M   V  +    A K+F EM+    I  D+ V LL+  S  ++L + +R G+
Sbjct: 820  NVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSDSYVVLLSAFSEFSVLEEGRRKGR 879

Query: 272  QLHAQVVLGGL-QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
            ++HA V+  GL  +++ + N ++ MY+K G +  + SVF  + EK  VSW ++ISG  QN
Sbjct: 880  EVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQN 939

Query: 331  GCAREALNQFIKMRQEKTDSVDS-ITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS 389
             C+ +A   F++MR  +T S+ S  TL+S L++   L  + +  Q+H    + G     S
Sbjct: 940  ECSEDAAESFLRMR--RTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVS 997

Query: 390  VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
            V N L++ Y++ G       VF  M    D VSWN++I
Sbjct: 998  VSNALLALYAETGCFTECLKVFSLMPEY-DQVSWNSVI 1034



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 194/377 (51%), Gaps = 23/377 (6%)

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           +H  +IK G + ++ ++N+++++Y  + DL +A ++F EM  +++++W  ++  +     
Sbjct: 566 LHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGK 625

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGD--LKRGKQLHAQVVLGGLQSELRLS 289
             +A   FR+M ++  I +  A  + +      G    K G Q+H  +      S++ + 
Sbjct: 626 PDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVC 685

Query: 290 NSIIAMYSKCGD-LDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK- 347
           N +I+MY  C D  + +RSVF++I  ++ +SW +IIS Y + G    A + F  M++E  
Sbjct: 686 NVLISMYGSCLDSANDARSVFDRIGIRNSISWNSIISVYSRRGDXVSAYDLFSSMQKEGL 745

Query: 348 --TDSVDSITLVSILTASGELAALEICL--QLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
             +   +  T  S++TA+       +C+  Q+     ++GF +   V + L+S +++ G 
Sbjct: 746 GFSFKPNEYTFGSLITAACSSVDFGLCVLEQMLARVEKSGFLQDLYVGSALVSGFARFGL 805

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
            D A  +FE+MG +R+VVS N ++ G      GE A  ++H+M +   + +S +Y+ +L+
Sbjct: 806 TDDAKNIFEQMG-VRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGI-NSDSYVVLLS 863

Query: 464 ACGHAGLTNDGLV--------IFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAG 515
           A     +  +G          +    + +NKV         +V++ A++G ++DA  +  
Sbjct: 864 AFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNG----LVNMYAKSGAIADACSVFE 919

Query: 516 KLLEGMGPNIWRALLSG 532
            ++E    + W +L+SG
Sbjct: 920 LMVEKDSVS-WNSLISG 935



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 134/267 (50%), Gaps = 22/267 (8%)

Query: 268 KRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGY 327
           +  ++LH Q +  G    L LSN++I +Y + GDL S++ +F++++ ++LV+W  +ISGY
Sbjct: 561 EEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGY 620

Query: 328 VQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGE--LAALEICLQLHGIAFEAGFP 385
            QNG   EA  +F  M +      +     S L A  E   +  ++ +Q+HG+  +  + 
Sbjct: 621 TQNGKPDEACARFRDMVRAGFIP-NHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYG 679

Query: 386 RYRSVQNCLISSYSKC-GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH 444
               V N LIS Y  C  + + A  VF+ +G +R+ +SWN+II  Y   G   +A  L+ 
Sbjct: 680 SDVVVCNVLISMYGSCLDSANDARSVFDRIG-IRNSISWNSIISVYSRRGDXVSAYDLFS 738

Query: 445 KMTETG----EVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPS---QEHY--G 495
            M + G      P+  T+ S++ A   +   + GL +  QM+   +V+ S   Q+ Y   
Sbjct: 739 SMQKEGLGFSFKPNEYTFGSLITAACSS--VDFGLCVLEQMLA--RVEKSGFLQDLYVGS 794

Query: 496 CVVDLLARAGCLSDASGLAGKLLEGMG 522
            +V   AR G   DA      + E MG
Sbjct: 795 ALVSGFARFGLTDDAKN----IFEQMG 817


>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
          Length = 941

 Score =  254 bits (648), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 161/552 (29%), Positives = 278/552 (50%), Gaps = 26/552 (4%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPE--KNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           ++ L+  Y K G +  A  +F+ + +  ++V SW+ V+ G   NG   +++  F  M  +
Sbjct: 202 ANALIGMYAKCGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALFRGMQSA 261

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL------------------- 106
           G   NS+T V VL   A L  L L R +H  ++K G E ++                   
Sbjct: 262 GFPMNSYTSVAVLQVCAELGLLSLGRELHAALLKCGSELNIQCNALLVMYAKYGRVDSAL 321

Query: 107 --FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
             F  +     +S N++++ ++ N  + +A+  F      G  P+   ++++      L 
Sbjct: 322 RVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLS 381

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
                   H   IK  L  D+ V N+++DMY     ++ + ++F  M  +D ISWT ++ 
Sbjct: 382 RLNNGREFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHISWTTILA 441

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            F       +AL++  E++K  I+ D++ + +++     L  +   KQ+H   +  GL  
Sbjct: 442 CFAQSSRHSEALEMILELQKEGIMVDSMMIGSILETCCGLKSISLLKQVHCYAIRNGLL- 500

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           +L L N +I +Y +CG+ D S ++F ++ +K +VSWT++I+    NG    A+  F +M 
Sbjct: 501 DLILENRLIDIYGECGEFDHSLNLFQRVEKKDIVSWTSMINCCTNNGRLNGAVFLFTEM- 559

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
           Q+     DS+ LVSIL A   L++L    Q+HG      FP    V + L+  YS CG++
Sbjct: 560 QKANIQPDSVALVSILVAIAGLSSLTKGKQVHGFLIRRNFPIEGPVVSSLVDMYSGCGSM 619

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           + A  VFE     +DVV W  +I   G++GHG+ A+ L+ +M +TG  PD  ++L++L A
Sbjct: 620 NYAIRVFERAK-CKDVVLWTAMINATGMHGHGKQAIDLFKRMLQTGLTPDHVSFLALLYA 678

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C H+ L  +G    + M+ + ++KP QEHY CVVD+L R+G   +A      +       
Sbjct: 679 CSHSKLVEEGKHYLDIMVSKYRLKPWQEHYACVVDILGRSGQTEEAYEFIKTMPMDPKSA 738

Query: 525 IWRALLSGCVLH 536
           +W ALL  C +H
Sbjct: 739 VWCALLGACRVH 750



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 138/496 (27%), Positives = 249/496 (50%), Gaps = 33/496 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + ++KL+  Y + G++ +A  LF+ +P + V SW+ ++  Y  +G   ++M+ +  M 
Sbjct: 94  DGFLATKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVGAYLSSGSAGEAMRVYGAMR 153

Query: 64  LS---GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--------------- 105
            S   G  P+  T+  VL A     +      +HGL VK GL+                 
Sbjct: 154 ASAAPGSAPDGCTLASVLKACGAEGDGRCGGEVHGLAVKVGLDKSTLVANALIGMYAKCG 213

Query: 106 -------LFEGLKNPY--LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTV 156
                  +FE L+     + S N++V+G + N    +A+ LF   + +G   N+ T + V
Sbjct: 214 LLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALFRGMQSAGFPMNSYTSVAV 273

Query: 157 IRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
           ++ C  LG  +L   +H   +K G  L++  N ++L MY+    +D+A+++F ++  KD 
Sbjct: 274 LQVCAELGLLSLGRELHAALLKCGSELNIQCN-ALLVMYAKYGRVDSALRVFGQIAEKDY 332

Query: 217 ISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQ 276
           ISW  M+  +V   +  +A+  F EM +     D   +++L S    L  L  G++ HA 
Sbjct: 333 ISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSRLNNGREFHAY 392

Query: 277 VVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
            +   L ++L++ N+++ MY KCG ++ S  VF  +  +  +SWT I++ + Q+    EA
Sbjct: 393 AIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHISWTTILACFAQSSRHSEA 452

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
           L   +++++E    VDS+ + SIL     L ++ +  Q+H  A   G      ++N LI 
Sbjct: 453 LEMILELQKEGI-MVDSMMIGSILETCCGLKSISLLKQVHCYAIRNGLLDL-ILENRLID 510

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
            Y +CG  D +  +F+ +   +D+VSW ++I     NG    A+ L+ +M +    PDS 
Sbjct: 511 IYGECGEFDHSLNLFQRVE-KKDIVSWTSMINCCTNNGRLNGAVFLFTEMQKANIQPDSV 569

Query: 457 TYLSILNACGHAGLTN 472
             +SIL A   AGL++
Sbjct: 570 ALVSILVAI--AGLSS 583



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 120/499 (24%), Positives = 231/499 (46%), Gaps = 30/499 (6%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           LL  Y K G++  A  +F +I EK+ +SW+ ++  Y  N F+ +++  F  M+  G  P+
Sbjct: 307 LLVMYAKYGRVDSALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPD 366

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------------FE 108
              +V +  A   L  L   R  H   +K  L +DL                      FE
Sbjct: 367 HACVVSLSSALGHLSRLNNGREFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFE 426

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            +     +S   I+A F  +    +A+ +    +  G++ +++ + +++  C  L S +L
Sbjct: 427 SMGIRDHISWTTILACFAQSSRHSEALEMILELQKEGIMVDSMMIGSILETCCGLKSISL 486

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
            + +H   I+ GL LD+ + N ++D+Y    + D ++ +F+ +E KD++SWT M+    +
Sbjct: 487 LKQVHCYAIRNGL-LDLILENRLIDIYGECGEFDHSLNLFQRVEKKDIVSWTSMINCCTN 545

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
                 A+ +F EM+K+ I  D+VAL++++   A L  L +GKQ+H  ++      E  +
Sbjct: 546 NGRLNGAVFLFTEMQKANIQPDSVALVSILVAIAGLSSLTKGKQVHGFLIRRNFPIEGPV 605

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
            +S++ MYS CG ++ +  VF +   K +V WTA+I+    +G  ++A++ F +M Q   
Sbjct: 606 VSSLVDMYSGCGSMNYAIRVFERAKCKDVVLWTAMINATGMHGHGKQAIDLFKRMLQTGL 665

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN---CLISSYSKCGNVD 405
            + D ++ +++L A      +E     H +       R +  Q    C++    + G  +
Sbjct: 666 -TPDHVSFLALLYACSHSKLVE--EGKHYLDIMVSKYRLKPWQEHYACVVDILGRSGQTE 722

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            AY   + M        W  ++    V+ +   A+   +K+ E  E  +   Y+ + N  
Sbjct: 723 EAYEFIKTMPMDPKSAVWCALLGACRVHRNYGLAVVAANKLLEL-EPDNPGNYILVSNVF 781

Query: 466 GHAGLTNDGLVIFNQMIEE 484
              G  N+      +M E 
Sbjct: 782 AEMGKWNNAKETRTRMAER 800


>gi|449508249|ref|XP_004163262.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g33170-like [Cucumis sativus]
          Length = 840

 Score =  254 bits (648), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 174/595 (29%), Positives = 288/595 (48%), Gaps = 33/595 (5%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  D Y  + ++S Y   G + EA  LF+E P  N ++WS ++ GY  NG   + ++ FS
Sbjct: 64  PYRDKYTWNIMISAYANLGNLVEARKLFNETPIXNSITWSSLVSGYCKNGCEVEGLRQFS 123

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY---- 114
            M   G  P+ +T+  VL A + L  L   + IH   +K  LE+++F   GL + Y    
Sbjct: 124 QMWSDGQKPSQYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCK 183

Query: 115 -----------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
                             V   A++ G+  N    +A+  F   R  G+  N  T  +++
Sbjct: 184 CLLEAEYLFFSLPDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSIL 243

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
             C ++ + A    +HG  I  G   +V V ++++DMY+   DL +A  I   ME  DV+
Sbjct: 244 TACTSISAYAFGRQVHGCIIWSGFGPNVYVQSALVDMYAKCGDLASARMILDTMEIDDVV 303

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
            W  M+   V   Y  +AL +F +M    I  D     +++   A   +LK G+ +H+  
Sbjct: 304 CWNSMIVGCVTHGYMEEALVLFHKMHNRDIRIDDFTYPSVLKSLASCKNLKIGESVHSLT 363

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           +  G  +   +SN+++ MY+K G+L  +  VFN+I +K ++SWT++++GYV NG   +AL
Sbjct: 364 IKTGFDACKTVSNALVDMYAKQGNLSCALDVFNKILDKDVISWTSLVTGYVHNGFHEKAL 423

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
             F  MR  + D +D   +  + +A  EL  +E   Q+H    ++      S +N LI+ 
Sbjct: 424 QLFCDMRTARVD-LDQFVVACVFSACAELTVIEFGRQVHANFIKSSAGSLLSAENSLITM 482

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET-GEVPDSS 456
           Y+KCG ++ A  V + M   R+V+SW  II GY  NG  ET  + +  M +  G  P S 
Sbjct: 483 YAKCGCLEDAIRVXDSME-TRNVISWTAIIVGYAQNGLVETGQSYFESMEKVYGIKPASD 541

Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK 516
            Y  +++  G AG  N+   + N+M     V+P    +  ++      G L +    AGK
Sbjct: 542 RYACMIDLLGRAGKINEAEHLLNRM----DVEPDATIWKSLLSACRVHGNL-ELGERAGK 596

Query: 517 LLEGMGP--NIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFLNSTSR 569
            L  + P  ++   LLS      GR++DA  +R   +  GI + PG S++   S+
Sbjct: 597 NLIKLEPSNSLPYVLLSNMFSVAGRWEDAAHIRRAMKTMGIXQEPGYSWIEMKSQ 651


>gi|328774747|gb|AEB39773.1| pentatricopeptide repeat protein 43 [Funaria hygrometrica]
          Length = 1073

 Score =  253 bits (647), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 157/549 (28%), Positives = 260/549 (47%), Gaps = 25/549 (4%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+S Y + G +  A  +FD +   N  +W+ +I GY   G  E++ + F  M   G  P+
Sbjct: 343 LISMYSRCGSLANARQVFDNLRSLNRTTWNAMIAGYG-EGLMEEAFRLFRAMEQKGFQPD 401

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------------FE 108
            FT   +L   A   +L+  + +H  +   G ++DL                      F 
Sbjct: 402 KFTYASLLAICADRADLDRGKELHSQIASTGWQTDLTVATALISMYAKCGSPEEARKVFN 461

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            +    ++S NA ++    + L ++A   F   R   + P+ +T +T++  C +      
Sbjct: 462 QMPERNVISWNAFISCCCRHDLGKEAFQAFKQMRRDDVNPDHITFITLLNSCTSPEDLER 521

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
              IHG   + G++ +  V N+++ MY    +L  A ++F  +  +D+ SW  M+   V 
Sbjct: 522 GRYIHGKINQWGMLSNNHVANALISMYGRCGNLADAREVFYRIRRRDLGSWNAMIAANVQ 581

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
               G A  +FR+ R      D    +N++   A L DL  G+ +H  V  GG   ++R+
Sbjct: 582 HGANGSAFDLFRKYRSEGGKGDKYTFINVLRAVANLEDLDAGRMIHGLVEKGGFGKDIRV 641

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
             ++I MYSKCG L  + +VF+ + EK +V W A+++ Y  +   ++AL  F +M+ E  
Sbjct: 642 LTTLIKMYSKCGSLRDAENVFSTVQEKDVVCWNAMLAAYAHSDRGQDALKLFQQMQLEGV 701

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
           +  DS T  + L A   L A+E   ++H    EAG      V N LI  YS+CG +  A 
Sbjct: 702 NP-DSSTYSTALNACARLTAVEHGKKIHAQLKEAGMETDTRVSNSLIEMYSRCGCLCSAK 760

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
            VFE+M   RD+ SWN +I GY  NG G  AL  Y  M     VP+ +T+ SIL++    
Sbjct: 761 QVFEKM-LSRDINSWNALIAGYCQNGQGNIALEYYELMLRASIVPNKATFTSILSSYAQL 819

Query: 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRA 528
           G           + +E  ++PS++HY  +V  L RAG L +A     ++       +W +
Sbjct: 820 GEEEQAFDFLESIKKEWNMEPSEQHYAYMVAALGRAGLLKEAEEFIEEISAESAALMWES 879

Query: 529 LLSGCVLHV 537
           LL  C +H+
Sbjct: 880 LLVACRIHL 888



 Score =  244 bits (623), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 153/547 (27%), Positives = 270/547 (49%), Gaps = 27/547 (4%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ L++ Y K G ++ A  +F+E+ E+NVVSW+ +I GY  +G   +++  F  ++ SG+
Sbjct: 239 STALINMYCKCGSLELARKVFNEMRERNVVSWTAMISGYVQHGDSREALALFRKLIRSGI 298

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL--------------------- 106
            PN  +   +L A     +L     +H  + + GLE ++                     
Sbjct: 299 QPNKVSFASILGACTNPNDLGEGLKLHAYIKQAGLEQEVLVGNALISMYSRCGSLANARQ 358

Query: 107 -FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
            F+ L++    + NA++AG+    L ++A  LF      G  P+  T  +++  C     
Sbjct: 359 VFDNLRSLNRTTWNAMIAGY-GEGLMEEAFRLFRAMEQKGFQPDKFTYASLLAICADRAD 417

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
               + +H      G   D++V  +++ MY+     + A ++F +M  ++VISW   +  
Sbjct: 418 LDRGKELHSQIASTGWQTDLTVATALISMYAKCGSPEEARKVFNQMPERNVISWNAFISC 477

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
               +   +A + F++MR+  +  D +  + L++      DL+RG+ +H ++   G+ S 
Sbjct: 478 CCRHDLGKEAFQAFKQMRRDDVNPDHITFITLLNSCTSPEDLERGRYIHGKINQWGMLSN 537

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
             ++N++I+MY +CG+L  +R VF +I  + L SW A+I+  VQ+G    A + F K R 
Sbjct: 538 NHVANALISMYGRCGNLADAREVFYRIRRRDLGSWNAMIAANVQHGANGSAFDLFRKYRS 597

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
           E     D  T +++L A   L  L+    +HG+  + GF +   V   LI  YSKCG++ 
Sbjct: 598 EGGKG-DKYTFINVLRAVANLEDLDAGRMIHGLVEKGGFGKDIRVLTTLIKMYSKCGSLR 656

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            A  VF  +   +DVV WN ++  Y  +  G+ AL L+ +M   G  PDSSTY + LNAC
Sbjct: 657 DAENVFSTVQ-EKDVVCWNAMLAAYAHSDRGQDALKLFQQMQLEGVNPDSSTYSTALNAC 715

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI 525
                   G  I  Q+ +E  ++        ++++ +R GCL  A  +  K+L     N 
Sbjct: 716 ARLTAVEHGKKIHAQL-KEAGMETDTRVSNSLIEMYSRCGCLCSAKQVFEKML-SRDINS 773

Query: 526 WRALLSG 532
           W AL++G
Sbjct: 774 WNALIAG 780



 Score =  241 bits (615), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 162/574 (28%), Positives = 281/574 (48%), Gaps = 28/574 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y ++ L+S Y K G I++A N+F  + +K+VVSW+ +I GY+++G  +++   F  M 
Sbjct: 134 DIYLNNMLISMYSKCGSIEDANNVFQAMEDKDVVSWNAMISGYALHGRDQEAADLFYQMQ 193

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
             GL PN  T + +L A      LE    IH  + K G ESD                  
Sbjct: 194 REGLKPNQNTFISILSACQSPIALEFGEQIHSRIAKAGYESDVNVSTALINMYCKCGSLE 253

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +F  ++   +VS  A+++G++ +   ++A+ LF     SG+ PN V+  +++  C 
Sbjct: 254 LARKVFNEMRERNVVSWTAMISGYVQHGDSREALALFRKLIRSGIQPNKVSFASILGACT 313

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
                     +H    + GL  +V V N+++ MYS    L  A Q+F  +   +  +W  
Sbjct: 314 NPNDLGEGLKLHAYIKQAGLEQEVLVGNALISMYSRCGSLANARQVFDNLRSLNRTTWNA 373

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+  + +     +A ++FR M +     D     +L+++ A   DL RGK+LH+Q+   G
Sbjct: 374 MIAGYGE-GLMEEAFRLFRAMEQKGFQPDKFTYASLLAICADRADLDRGKELHSQIASTG 432

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
            Q++L ++ ++I+MY+KCG  + +R VFNQ+ E++++SW A IS   ++   +EA   F 
Sbjct: 433 WQTDLTVATALISMYAKCGSPEEARKVFNQMPERNVISWNAFISCCCRHDLGKEAFQAFK 492

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +MR++  +  D IT +++L +      LE    +HG   + G      V N LIS Y +C
Sbjct: 493 QMRRDDVNP-DHITFITLLNSCTSPEDLERGRYIHGKINQWGMLSNNHVANALISMYGRC 551

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           GN+  A  VF  +   RD+ SWN +I     +G   +A  L+ K    G   D  T++++
Sbjct: 552 GNLADAREVFYRIR-RRDLGSWNAMIAANVQHGANGSAFDLFRKYRSEGGKGDKYTFINV 610

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L A  +    + G +I   ++E+            ++ + ++ G L DA  +   + E  
Sbjct: 611 LRAVANLEDLDAGRMIHG-LVEKGGFGKDIRVLTTLIKMYSKCGSLRDAENVFSTVQE-K 668

Query: 522 GPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGI 555
               W A+L+    H  R QDA  L    Q +G+
Sbjct: 669 DVVCWNAMLAA-YAHSDRGQDALKLFQQMQLEGV 701



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 117/443 (26%), Positives = 216/443 (48%), Gaps = 24/443 (5%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ L+S Y K G  +EA  +F+++PE+NV+SW+  I     +   +++ +AF  M    +
Sbjct: 440 ATALISMYAKCGSPEEARKVFNQMPERNVISWNAFISCCCRHDLGKEAFQAFKQMRRDDV 499

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES----------------------D 105
            P+  T + +L +    ++LE  R IHG + ++G+ S                      +
Sbjct: 500 NPDHITFITLLNSCTSPEDLERGRYIHGKINQWGMLSNNHVANALISMYGRCGNLADARE 559

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F  ++   L S NA++A  + +     A  LF  +R  G   +  T + V+R    L  
Sbjct: 560 VFYRIRRRDLGSWNAMIAANVQHGANGSAFDLFRKYRSEGGKGDKYTFINVLRAVANLED 619

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
                +IHGL  K G   D+ V  +++ MYS    L  A  +F  ++ KDV+ W  M+  
Sbjct: 620 LDAGRMIHGLVEKGGFGKDIRVLTTLIKMYSKCGSLRDAENVFSTVQEKDVVCWNAMLAA 679

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +   +   DALK+F++M+   +  D+      ++  A L  ++ GK++HAQ+   G++++
Sbjct: 680 YAHSDRGQDALKLFQQMQLEGVNPDSSTYSTALNACARLTAVEHGKKIHAQLKEAGMETD 739

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
            R+SNS+I MYS+CG L S++ VF ++  + + SW A+I+GY QNG    AL ++ ++  
Sbjct: 740 TRVSNSLIEMYSRCGCLCSAKQVFEKMLSRDINSWNALIAGYCQNGQGNIAL-EYYELML 798

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQ-LHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
             +   +  T  SIL++  +L   E     L  I  E            ++++  + G +
Sbjct: 799 RASIVPNKATFTSILSSYAQLGEEEQAFDFLESIKKEWNMEPSEQHYAYMVAALGRAGLL 858

Query: 405 DLAYIVFEEMGFLRDVVSWNTII 427
             A    EE+      + W +++
Sbjct: 859 KEAEEFIEEISAESAALMWESLL 881



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 126/417 (30%), Positives = 213/417 (51%), Gaps = 14/417 (3%)

Query: 157 IRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
           ++ CV   S A  + +H          D+ +NN ++ MYS    ++ A  +F+ ME KDV
Sbjct: 107 LQQCVLAKSLAEGKKVHDHMRSAQFKPDIYLNNMLISMYSKCGSIEDANNVFQAMEDKDV 166

Query: 217 ISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQ 276
           +SW  M+  +       +A  +F +M++  +  +    ++++S       L+ G+Q+H++
Sbjct: 167 VSWNAMISGYALHGRDQEAADLFYQMQREGLKPNQNTFISILSACQSPIALEFGEQIHSR 226

Query: 277 VVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
           +   G +S++ +S ++I MY KCG L+ +R VFN++ E+++VSWTA+ISGYVQ+G +REA
Sbjct: 227 IAKAGYESDVNVSTALINMYCKCGSLELARKVFNEMRERNVVSWTAMISGYVQHGDSREA 286

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
           L  F K+ +      + ++  SIL A      L   L+LH    +AG  +   V N LIS
Sbjct: 287 LALFRKLIRSGIQP-NKVSFASILGACTNPNDLGEGLKLHAYIKQAGLEQEVLVGNALIS 345

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
            YS+CG++  A  VF+ +  L +  +WN +I GYG  G  E A  L+  M + G  PD  
Sbjct: 346 MYSRCGSLANARQVFDNLRSL-NRTTWNAMIAGYG-EGLMEEAFRLFRAMEQKGFQPDKF 403

Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK 516
           TY S+L  C      + G  + +Q I     +        ++ + A+ G   +A  +  +
Sbjct: 404 TYASLLAICADRADLDRGKELHSQ-IASTGWQTDLTVATALISMYAKCGSPEEARKVFNQ 462

Query: 517 LLEGMGPNI--WRALLSGCVLH-VGR--FQDAEALRSGSQKKGIIKIPGISFLNSTS 568
           + E    N+  W A +S C  H +G+  FQ  + +R        I    I+ LNS +
Sbjct: 463 MPE---RNVISWNAFISCCCRHDLGKEAFQAFKQMRRDDVNPDHITF--ITLLNSCT 514


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  253 bits (647), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 173/627 (27%), Positives = 298/627 (47%), Gaps = 89/627 (14%)

Query: 4   DPYNSSKLLSNYFKSGKIKE---AENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           D Y  +K+L  Y +SG + +   A  LF+E+PE+N+ +W+ +I  Y+    + ++   F 
Sbjct: 105 DAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEAWGIFD 164

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPYL--- 115
            M+  G+ P++FT    L     L++ +  + +H  ++  G + D F G  L + Y    
Sbjct: 165 RMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCD 224

Query: 116 -----------------VSCNAIVAGFINNKLFQQAVLLFNFFRGS--GLVPNAVTMLTV 156
                            V+ N+I++       F  A++LF   + S  G+ P+  T  T+
Sbjct: 225 DEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTL 284

Query: 157 IRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
           +  C    +      IH   I+  +  ++ V   ++ MYS    L+ A +IF  M  ++ 
Sbjct: 285 LTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNA 344

Query: 217 ISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQ 276
            SW  M+  +       +AL++F++M+ + I  D  +L +++S    L D ++G++LH  
Sbjct: 345 YSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNF 404

Query: 277 VVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVS--WTAIISGYVQNGCAR 334
           +V   ++ E  L   ++ MY+KCG +D +  V++Q  +K   +  W +I++GY   G  +
Sbjct: 405 IVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAGYANKGLKK 464

Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
           E+ N F++M +   +  D +T+V+I+     L  LE  L                     
Sbjct: 465 ESFNHFLEMLESDIE-YDVLTMVTIVN----LLVLETAL--------------------- 498

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           +  YSKCG +  A  VF+ M   +++VSWN +I GY  +G  + AL LY +M + G  P+
Sbjct: 499 VDMYSKCGAITKARTVFDNMNG-KNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPN 557

Query: 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLA 514
             T+L+IL+AC H GL  +GL IF  M E+  ++   EHY C+VDLL RAG L DA    
Sbjct: 558 EVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFV 617

Query: 515 GKLLEGMGPNIWRALLSGCVLH---------------------------------VGRFQ 541
            K+      + W ALL  C +H                                  GR++
Sbjct: 618 EKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWK 677

Query: 542 DAEALRSGSQKKGIIKIPGISFLNSTS 568
           + E +R   + KG+ K PG+S++   S
Sbjct: 678 EVEDIRQMMKMKGVKKDPGVSWIEINS 704



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 136/297 (45%), Gaps = 16/297 (5%)

Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDS---SRSVFNQITEKSLVSWTAI 323
            +RGK +H Q++  G   +  L   I+ +Y++ G LD    +R +F ++ E++L +W  +
Sbjct: 87  FQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTM 146

Query: 324 ISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG 383
           I  Y +     EA   F +M +      D+ T  S L   G L + +   Q+H      G
Sbjct: 147 ILAYARVDDYMEAWGIFDRMLKIGV-CPDNFTFASALRVCGALRSRDGGKQVHSKLIACG 205

Query: 384 FPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALY 443
           F     V N LI  Y+KC + +    VF+EMG  R+ V+WN+II      GH   AL L+
Sbjct: 206 FKGDTFVGNALIDMYAKCDDEESCLKVFDEMG-ERNQVTWNSIISAEAQFGHFNDALVLF 264

Query: 444 HKMTET--GEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKP---SQEHYGCVV 498
            +M E+  G  PD  T+ ++L  C +    N G  I   +I  N  K      E    +V
Sbjct: 265 LRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETE----LV 320

Query: 499 DLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGI 555
            + +  G L+ A  +  ++ E    + W +++ G     G  Q+A  L    Q  GI
Sbjct: 321 HMYSECGRLNYAKEIFNRMAERNAYS-WNSMIEG-YQQNGETQEALRLFKQMQLNGI 375


>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 881

 Score =  253 bits (647), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 164/563 (29%), Positives = 270/563 (47%), Gaps = 25/563 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D    + L+  Y    K+  A N+F E+PE+N V WS VI GY  N    + +K +  M+
Sbjct: 204 DVVTGTALVDMYSTCKKLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVML 263

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK--FGLES----------------- 104
             G+  +  T      + AGL   EL   +H   +K  FG ++                 
Sbjct: 264 DEGMGVSQATFASAFRSCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMV 323

Query: 105 ---DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +F    NP   S NA++ G+       +A+ +F   + S L  + +++   +  C 
Sbjct: 324 DARKVFNTFPNPTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACS 383

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
           A+        +HGL +K GL  ++ V N++LDMY+    L  A  IF +ME KD +SW  
Sbjct: 384 AIKGYLEGIQLHGLAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIKDAVSWNA 443

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++      E+  + L +F  M +S +  D     +++   A    L  G ++H +V+  G
Sbjct: 444 IIAAHEQNEHVEETLALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIKSG 503

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           +  +  + ++II MY KCG L  +  +  ++ E++ VSW +IISG+        AL+ F 
Sbjct: 504 MGLDWFVGSAIIDMYCKCGMLVEAEKIHERLEERTTVSWNSIISGFSSEKQGENALSYFS 563

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +M Q      D+ T  ++L     LA +E+  Q+HG   +        + + ++  YSKC
Sbjct: 564 RMLQVGVIP-DNFTYATVLDICANLATVELGKQIHGQILKLQLHSDVYIASTIVDMYSKC 622

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           GN+  + I+FE+    RD V+W+ +I  Y  +G GE A+ L+ +M      P+ + ++S+
Sbjct: 623 GNMQDSRIMFEKAP-KRDYVTWSAMICAYAYHGLGEDAIKLFEEMQLQNVKPNHTIFISV 681

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L AC H G  + GL  F +M     + P  EHY C+VDLL R+G +++A  L   +    
Sbjct: 682 LRACAHMGFVDKGLHYFREMRSHYGLDPQMEHYSCMVDLLGRSGQVNEALELIESMPFEA 741

Query: 522 GPNIWRALLSGCVLHVGRFQDAE 544
              IWR LL  C L  G  + AE
Sbjct: 742 DDVIWRTLLGICRLQ-GNVEVAE 763



 Score =  212 bits (539), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 159/584 (27%), Positives = 279/584 (47%), Gaps = 41/584 (7%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  D  + + ++  Y   G ++ A+ LFD +PE++VVSW+ ++  Y  NGFH KS++ F+
Sbjct: 100 PQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEIFT 159

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG----------- 109
            M L  +  +  T   VL A  G+++  L   +H L ++ G +SD+  G           
Sbjct: 160 KMRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYSTCK 219

Query: 110 -LKNPYLVSC----------NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
            L + + + C          +A++AG++ N  F + + L+      G+  +  T  +  R
Sbjct: 220 KLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFASAFR 279

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C  L +  L   +H   +K     D  V  + LDMY+    +  A ++F         S
Sbjct: 280 SCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVFNTFPNPTRQS 339

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLN-LISVNAILGDLKRGKQLHAQV 277
              ++  +   +   +AL+IFR ++KS +  D ++L   L + +AI G L+ G QLH   
Sbjct: 340 HNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYLE-GIQLHGLA 398

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           V  GL   + ++N+I+ MY+KCG L  +  +F+ +  K  VSW AII+ + QN    E L
Sbjct: 399 VKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIKDAVSWNAIIAAHEQNEHVEETL 458

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
             F+ M +   +  D  T  S++ A     AL   +++HG   ++G      V + +I  
Sbjct: 459 ALFVSMLRSTMEP-DDYTFGSVVKACAGKKALNYGMEVHGRVIKSGMGLDWFVGSAIIDM 517

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           Y KCG +  A  + E +   R  VSWN+II G+     GE AL+ + +M + G +PD+ T
Sbjct: 518 YCKCGMLVEAEKIHERLE-ERTTVSWNSIISGFSSEKQGENALSYFSRMLQVGVIPDNFT 576

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY--GCVVDLLARAGCLSDASGLAG 515
           Y ++L+ C +      G  I  Q++   K++   + Y    +VD+ ++ G + D+     
Sbjct: 577 YATVLDICANLATVELGKQIHGQIL---KLQLHSDVYIASTIVDMYSKCGNMQDS----- 628

Query: 516 KLLEGMGPN----IWRALLSGCVLHVGRFQDAEALRSGSQKKGI 555
           +++    P      W A++     H G  +DA  L    Q + +
Sbjct: 629 RIMFEKAPKRDYVTWSAMICAYAYH-GLGEDAIKLFEEMQLQNV 671



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 117/482 (24%), Positives = 224/482 (46%), Gaps = 25/482 (5%)

Query: 12  LSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNS 71
           L  Y K  ++ +A  +F+  P     S + +I GY+      ++++ F  +  S L  + 
Sbjct: 313 LDMYAKCDRMVDARKVFNTFPNPTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDE 372

Query: 72  FTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------------FEG 109
            ++ G L A + ++       +HGL VK GL+ ++                      F+ 
Sbjct: 373 ISLSGALTACSAIKGYLEGIQLHGLAVKCGLDFNICVANTILDMYAKCGALMEACLIFDD 432

Query: 110 LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALC 169
           ++    VS NAI+A    N+  ++ + LF     S + P+  T  +V++ C    +    
Sbjct: 433 MEIKDAVSWNAIIAAHEQNEHVEETLALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYG 492

Query: 170 ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDF 229
             +HG  IK G+ LD  V ++++DMY     L  A +I   +E +  +SW  ++  F   
Sbjct: 493 MEVHGRVIKSGMGLDWFVGSAIIDMYCKCGMLVEAEKIHERLEERTTVSWNSIISGFSSE 552

Query: 230 EYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLS 289
           +   +AL  F  M +  +I D      ++ + A L  ++ GKQ+H Q++   L S++ ++
Sbjct: 553 KQGENALSYFSRMLQVGVIPDNFTYATVLDICANLATVELGKQIHGQILKLQLHSDVYIA 612

Query: 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD 349
           ++I+ MYSKCG++  SR +F +  ++  V+W+A+I  Y  +G   +A+  F +M+ +   
Sbjct: 613 STIVDMYSKCGNMQDSRIMFEKAPKRDYVTWSAMICAYAYHGLGEDAIKLFEEMQLQNVK 672

Query: 350 SVDSITLVSILTASGELAALEICLQ-LHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
              +I  +S+L A   +  ++  L     +    G        +C++    + G V+ A 
Sbjct: 673 PNHTI-FISVLRACAHMGFVDKGLHYFREMRSHYGLDPQMEHYSCMVDLLGRSGQVNEAL 731

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
            + E M F  D V W T++    + G+ E A    + + +  +  DSS Y+ + N    A
Sbjct: 732 ELIESMPFEADDVIWRTLLGICRLQGNVEVAEKAANSLLQL-DPQDSSAYVLLSNVYAIA 790

Query: 469 GL 470
           G+
Sbjct: 791 GM 792



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 140/351 (39%), Gaps = 43/351 (12%)

Query: 151 VTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFRE 210
           +T   + + C  L +    +  H      G +  V V+N +L  Y   ++L+ A  +F +
Sbjct: 39  LTFSHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNYAFNVFDK 98

Query: 211 MECKDVISWTRMMGLFVDFEYAG------------------------------------D 234
           M  +DVISW  M+     F YAG                                     
Sbjct: 99  MPQRDVISWNTMI-----FGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRK 153

Query: 235 ALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIA 294
           +++IF +MR   I  D      ++     + D   G Q+H   +  G  S++    +++ 
Sbjct: 154 SIEIFTKMRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVD 213

Query: 295 MYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSI 354
           MYS C  LD + ++F ++ E++ V W+A+I+GYV+N    E L  +  M  E    V   
Sbjct: 214 MYSTCKKLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGM-GVSQA 272

Query: 355 TLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM 414
           T  S   +   L+A E+  QLH  A +  F     V    +  Y+KC  +  A  VF   
Sbjct: 273 TFASAFRSCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVFNTF 332

Query: 415 GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
                  S N +I GY        AL ++  + ++    D  +    L AC
Sbjct: 333 PNPTR-QSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTAC 382



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 108/239 (45%), Gaps = 35/239 (14%)

Query: 264 LGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAI 323
           L  +  GKQ HAQ+ + G    + +SN ++  Y KC +L+ + +VF+++ ++ ++SW  +
Sbjct: 51  LKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNYAFNVFDKMPQRDVISWNTM 110

Query: 324 ISG-------------------------------YVQNGCAREALNQFIKMRQEKTDSVD 352
           I G                               Y+QNG  R+++  F KMR  +    D
Sbjct: 111 IFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEIFTKMRLLEIQH-D 169

Query: 353 SITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFE 412
             T   +L A   +    + LQ+H +A + GF         L+  YS C  +D A+ +F 
Sbjct: 170 YATFAVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYSTCKKLDHAFNIFC 229

Query: 413 EMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLT 471
           EM   R+ V W+ +I GY  N      L LY  M + G     +T+ S   +C  AGL+
Sbjct: 230 EMP-ERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFASAFRSC--AGLS 285



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 118/256 (46%), Gaps = 42/256 (16%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  S ++  Y K G + EAE + + + E+  VSW+ +I G+S     E ++  FS M
Sbjct: 506 LDWFVGSAIIDMYCKCGMLVEAEKIHERLEERTTVSWNSIISGFSSEKQGENALSYFSRM 565

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
           +  G++P++FT   VL   A L  +EL + IHG ++K  L SD                 
Sbjct: 566 LQVGVIPDNFTYATVLDICANLATVELGKQIHGQILKLQLHSDVYIASTIVDMYSKCGNM 625

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +FE       V+ +A++  +  + L + A+ LF   +   + PN    ++V+R C
Sbjct: 626 QDSRIMFEKAPKRDYVTWSAMICAYAYHGLGEDAIKLFEEMQLQNVKPNHTIFISVLRAC 685

Query: 161 VALG--SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDL-------DAAIQIFREM 211
             +G   + L      +    GL       +  ++ YSC++DL       + A+++   M
Sbjct: 686 AHMGFVDKGL-HYFREMRSHYGL-------DPQMEHYSCMVDLLGRSGQVNEALELIESM 737

Query: 212 --ECKDVISWTRMMGL 225
             E  DVI W  ++G+
Sbjct: 738 PFEADDVI-WRTLLGI 752



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 64/135 (47%), Gaps = 5/135 (3%)

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
           + +    +T   I      L A+    Q H      GF     V NCL+  Y KC N++ 
Sbjct: 32  QMNPTKKLTFSHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNY 91

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           A+ VF++M   RDV+SWNT+I+GY   G+ E A  L+  M E     D  ++ S+L+   
Sbjct: 92  AFNVFDKMP-QRDVISWNTMIFGYAGVGNMEFAQFLFDSMPER----DVVSWNSMLSCYL 146

Query: 467 HAGLTNDGLVIFNQM 481
             G     + IF +M
Sbjct: 147 QNGFHRKSIEIFTKM 161


>gi|356537365|ref|XP_003537198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49740-like [Glycine max]
          Length = 722

 Score =  253 bits (647), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 176/625 (28%), Positives = 305/625 (48%), Gaps = 71/625 (11%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C D Y+ + LLS   K   ++ A  +FD IP+ ++  W+ VI G +  G  + +   F  
Sbjct: 109 CPDAYSWTTLLSACAKLDSVEHALKVFDGIPKGHIAVWNAVITGCAEKGNRDFAFGLFRD 168

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL------------------- 102
           M   G+  + +T    +++   L+  +  R +H +++K G                    
Sbjct: 169 MNKMGVKADKYTF-ATMLSLCSLELFDYGRHVHSVVIKSGFLGWTSVVNSLITMYFKCGC 227

Query: 103 ---ESDLFE----GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLT 155
                ++FE    G    Y VS NA++ GF + +  + A L+F   +     P  VT ++
Sbjct: 228 VVDACEVFEEAEEGGSRDY-VSYNAMIDGFASVERSEDAFLIFRDMQKGCFDPTEVTFVS 286

Query: 156 VIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKD 215
           V+  C +L  RA C+      IK+G +  V+VNN+++ MYS   ++     IF  ME +D
Sbjct: 287 VMSSCSSL--RAGCQ-AQSQAIKMGFVGCVAVNNAMMTMYSGFGEVIEVQNIFEGMEERD 343

Query: 216 VISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
           V+SW  M+ +F+      +A+  + +MR+  I  D     +L+   A    L+  + +H+
Sbjct: 344 VVSWNIMVSMFLQENLEEEAMLSYLKMRREGIEPDEFTYGSLL---AATDSLQVVEMIHS 400

Query: 276 QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
            +   GL  ++ + N++++ Y + G +  +  +F+ +  KSL+SW +IISG++ NG   +
Sbjct: 401 LLCKSGL-VKIEVLNALVSAYCRHGKIKRAFQIFSGVPYKSLISWNSIISGFLMNGHPLQ 459

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLI 395
            L QF  +   +    ++ +L  +L+    ++A+    Q+HG     GF    S+ N L+
Sbjct: 460 GLEQFSALLSTQVKP-NAYSLSLVLSICSSMSAMSHGKQVHGYILRHGFSSEVSLGNALV 518

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM-TETGEVPD 454
           + Y+KCG++D A  VF+ M   RD ++WN II  Y  +G GE A+  +  M T  G  PD
Sbjct: 519 TMYAKCGSLDKALRVFDAM-VERDTITWNAIISAYAQHGRGEEAVCCFEAMQTSPGIKPD 577

Query: 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLA 514
            +T+ S+L+AC HAGL +DG+ IF+ M++     PS +H+ C+VDLL R+G L +A  + 
Sbjct: 578 QATFTSVLSACSHAGLVDDGIRIFDTMVKVYGFVPSVDHFSCIVDLLGRSGYLDEAERVI 637

Query: 515 GKLLEGMGPNIWRALLSGCVLH---------------------------------VGRFQ 541
                G   NI  +L S C  H                                  G+++
Sbjct: 638 KSGYFGAHSNICWSLFSACAAHGNLGLGRTVARLILERDHNNPSVYVLLSNICAAAGQWE 697

Query: 542 DAEALRSGSQKKGIIKIPGISFLNS 566
           +A  LR   ++ G IK PG S++ +
Sbjct: 698 EAANLREMMREFGTIKQPGCSWIRT 722



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 107/409 (26%), Positives = 171/409 (41%), Gaps = 51/409 (12%)

Query: 111 KNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCE 170
           K P+ +  N ++A    +    Q++ LF     S   P+   + T I         A   
Sbjct: 8   KEPH-IKLNHMLAALARSNQHTQSLKLF-VHAHSSFTPDHYILSTAITAAANARRAAFGA 65

Query: 171 LIHGLTIKLGLILDVSVNNSVLDMYS-CLMDLDAAIQIFREMECKDVISWTRMMGLFVDF 229
            +H L ++ GL     V NS+L +Y+    DL +    F+E++C D  SWT ++      
Sbjct: 66  QLHALAVRTGLGAHSHVANSLLSLYAKAHRDLASVKLTFQEIDCPDAYSWTTLLSACAKL 125

Query: 230 EYAGDALKI-------------------------------FREMRKSRIICDTVALLNLI 258
           +    ALK+                               FR+M K  +  D      ++
Sbjct: 126 DSVEHALKVFDGIPKGHIAVWNAVITGCAEKGNRDFAFGLFRDMNKMGVKADKYTFATML 185

Query: 259 SVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE---K 315
           S+ + L     G+ +H+ V+  G      + NS+I MY KCG +  +  VF +  E   +
Sbjct: 186 SLCS-LELFDYGRHVHSVVIKSGFLGWTSVVNSLITMYFKCGCVVDACEVFEEAEEGGSR 244

Query: 316 SLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQL 375
             VS+ A+I G+     + +A   F  M++   D  + +T VS++++   L A     Q 
Sbjct: 245 DYVSYNAMIDGFASVERSEDAFLIFRDMQKGCFDPTE-VTFVSVMSSCSSLRA---GCQA 300

Query: 376 HGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGH 435
              A + GF    +V N +++ YS  G V     +FE M   RDVVSWN ++  +     
Sbjct: 301 QSQAIKMGFVGCVAVNNAMMTMYSGFGEVIEVQNIFEGME-ERDVVSWNIMVSMFLQENL 359

Query: 436 GETALALYHKMTETGEVPDSSTYLSILNACG--------HAGLTNDGLV 476
            E A+  Y KM   G  PD  TY S+L A          H+ L   GLV
Sbjct: 360 EEEAMLSYLKMRREGIEPDEFTYGSLLAATDSLQVVEMIHSLLCKSGLV 408


>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 165/550 (30%), Positives = 284/550 (51%), Gaps = 28/550 (5%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  + +++ Y K G + EA  LFD++PE+N++SW+ +I G+S NGF  ++ +AF  +
Sbjct: 243 MDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSL 302

Query: 63  MLSG--LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL-------------- 106
           + SG  L+P+  TMV +L   +G  N+++   IHG+ VK GL  +L              
Sbjct: 303 LESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCG 362

Query: 107 --------FEGLKNPYLVSCNAIVAGFINNK-LFQQAVLLFNFFRGSGLVP-NAVTMLTV 156
                   F  ++N  +VS N+++  +     +F+   LL   +    L+  N VT+L +
Sbjct: 363 CLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNL 422

Query: 157 IRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
           +  C+          +HG +++        +NN+ +  Y+    L  A  +F  M  K V
Sbjct: 423 LPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSV 482

Query: 217 ISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQ 276
            SW  ++G          AL  + EM +  I+ D  ++++L+     LG L+ GK++H  
Sbjct: 483 SSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGF 542

Query: 277 VVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
           V+  GL+    ++ S++++Y  C      R+ F ++ +K+ V W A++SGY QN    EA
Sbjct: 543 VLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQNELPNEA 602

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
           L+ F +M  +  +  D I + SIL A  +L+AL +  ++H  A +        V   L+ 
Sbjct: 603 LSLFRQMLSDGLEP-DEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMD 661

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
            Y+K G +  +  +F  +   ++V SWN +I G+GV+G G  A+ L+  M  + + PD  
Sbjct: 662 MYAKSGFLGHSQRIFNRLNG-KEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRF 720

Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK 516
           T+L +L AC HAGL ++GL    QM    K++P  EHY CV+D+L RAG L++A     +
Sbjct: 721 TFLGVLQACCHAGLVSEGLNYLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFINE 780

Query: 517 LLEGMGPNIW 526
           + E     IW
Sbjct: 781 MPEEPDAKIW 790



 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 157/561 (27%), Positives = 273/561 (48%), Gaps = 41/561 (7%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM-LSG 66
           +++L++ Y   G   E+  +FD +  KN+  W+ ++ GY  N  +++++  F  ++ ++ 
Sbjct: 146 NTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTE 205

Query: 67  LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG----------------- 109
             P++FT   ++ A  G  ++ L +S+HG+ VK GL  DLF G                 
Sbjct: 206 FQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAV 265

Query: 110 -----LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFF--RGSGLVPNAVTMLTVIRGCVA 162
                +    L+S N+++ GF  N  + +A   F      G GL+P+  TM+T++  C  
Sbjct: 266 ELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSG 325

Query: 163 LGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
            G+  +  +IHG+ +KLGL+ ++ V N+++DMYS    L  A  +FR++E K V+SW  M
Sbjct: 326 EGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSM 385

Query: 223 MGLFVDFEYAGDALKIFRE--MRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
           +G +    +  +   + R+  M +  +  + V +LNL+       +L   + LH   +  
Sbjct: 386 IGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRH 445

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
             Q +  ++N+ IA Y+KCG L  +  VF  +  KS+ SW A+I G+ QNG   +AL+ +
Sbjct: 446 SFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFY 505

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            +M +      D  ++VS+L A G L  L+   ++HG     G      V   L+S Y  
Sbjct: 506 FEMTRLGILP-DDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFH 564

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           C         FE MG  ++ V WN ++ GY  N     AL+L+ +M   G  PD     S
Sbjct: 565 CSKPFYGRTYFERMGD-KNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIAS 623

Query: 461 ILNACGHAGLTNDG-----LVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAG 515
           IL AC        G       + N ++E+N V  S      ++D+ A++G L  +  +  
Sbjct: 624 ILGACSQLSALGLGKEVHCFALKNSLMEDNFVACS------LMDMYAKSGFLGHSQRIFN 677

Query: 516 KLLEGMGPNIWRALLSGCVLH 536
           + L G     W  +++G  +H
Sbjct: 678 R-LNGKEVASWNVMITGFGVH 697



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 147/282 (52%), Gaps = 9/282 (3%)

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
           L+  +I MYS CG    SR VF+++  K+L  W A++SGYV+N    EA++ F+++    
Sbjct: 145 LNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVT 204

Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
               D+ T   ++ A      + +   +HG+A + G      V N +I+ Y KCG +D A
Sbjct: 205 EFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEA 264

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE--VPDSSTYLSILNAC 465
             +F++M   ++++SWN++I G+  NG    A   +  + E+G+  +PD +T +++L  C
Sbjct: 265 VELFDKMP-EQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVC 323

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGC--VVDLLARAGCLSDASGLAGKLLEGMGP 523
              G  + G+VI    +   K+    E   C  ++D+ ++ GCLS+A+ L  K +E    
Sbjct: 324 SGEGNVDVGMVIHGMAV---KLGLVHELMVCNALIDMYSKCGCLSEAAILFRK-IENKSV 379

Query: 524 NIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFLN 565
             W +++         F+  + LR    ++ ++++  ++ LN
Sbjct: 380 VSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILN 421



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 84/287 (29%), Positives = 145/287 (50%), Gaps = 7/287 (2%)

Query: 184 DVSVNNSVLDMYS-CLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREM 242
           D  +N  ++ MYS C   L++ + +F  +  K++  W  ++  +V  E   +A+  F E+
Sbjct: 142 DFVLNTRLITMYSICGYPLESRL-VFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLEL 200

Query: 243 -RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGD 301
              +    D      LI       D+  GK +H   V  GL  +L + N++IA+Y KCG 
Sbjct: 201 ISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGF 260

Query: 302 LDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV-DSITLVSIL 360
           LD +  +F+++ E++L+SW ++I G+ +NG   EA   F  + +     + D  T+V++L
Sbjct: 261 LDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLL 320

Query: 361 TASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDV 420
                   +++ + +HG+A + G      V N LI  YSKCG +  A I+F ++   + V
Sbjct: 321 PVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIEN-KSV 379

Query: 421 VSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS--TYLSILNAC 465
           VSWN++I  Y   G       L  KM    E+ + +  T L++L AC
Sbjct: 380 VSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPAC 426


>gi|449500331|ref|XP_004161068.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g33680-like [Cucumis sativus]
          Length = 710

 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 180/621 (28%), Positives = 291/621 (46%), Gaps = 59/621 (9%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGF--HEKSMKAFSHMM 63
           Y ++ L++ Y K G I +A+ +F+ I  K+VVSW+ +I+GYS  G   +   M+ F  M 
Sbjct: 46  YLTNSLVNLYAKCGSIVKAKLVFESITNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMR 105

Query: 64  LSGLLPNSFTMVGVLVAAA-------GLQNLELA------------RSIHGLMVKFGLES 104
               LPN  T  GV  AA+       GLQ   LA             S+  +  K G   
Sbjct: 106 AENTLPNGHTFSGVFTAASSSPETFGGLQAHALAIKTSNFYDVFVGSSLINMYCKIGCML 165

Query: 105 D---LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
           D   +F+ +     VS   I++G+   ++  +A  LF   R      +     +V+    
Sbjct: 166 DARKVFDTIPERNTVSWATIISGYAMERMAFEAWELFXLMRREEGAHDKFIYTSVLSALT 225

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
                   + IH L +K GL+   SV N+++ MY     LD A++ F     KD I+W+ 
Sbjct: 226 VPDLVHYGKQIHCLALKNGLLSIASVGNALVTMYGKCGCLDDALKTFELSGDKDDITWSA 285

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+  +     + +AL +F  M  +         + +I+  + +G L+ GKQ+H   +  G
Sbjct: 286 MITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINACSDIGALEEGKQIHGYSLKAG 345

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
            + ++    +++ MY+KCG L  +R  F+ + E  +V WT++ISGY QNG    AL  + 
Sbjct: 346 YECQIYFMTALVDMYAKCGSLVDARKGFDYLKEPDIVLWTSMISGYAQNGENETALTLYC 405

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +M+ E+      +T+ S+L A   LAALE   Q+H    + GF     + + L + Y+KC
Sbjct: 406 RMQMERI-MPHELTMASVLRACSSLAALEQGKQIHAQTIKYGFSLEVPIGSALSTMYAKC 464

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G+++   +VF  M   RD+++WN +I G   NG G  AL L+ ++      PD  T++++
Sbjct: 465 GSLEDGNLVFRRMPS-RDIMTWNAMISGLSQNGEGLKALELFEELRHGTTKPDYVTFVNV 523

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L+AC H GL   G V F  M++E  + P  EHY C+VD+L+RAG L +            
Sbjct: 524 LSACSHMGLVERGKVYFRMMLDEFGIVPRVEHYACMVDILSRAGKLHETKEFIESATIDH 583

Query: 522 GPNIWRALLSGC---------------------------------VLHVGRFQDAEALRS 548
           G  +WR LL  C                                    +GR  D E +R 
Sbjct: 584 GMCLWRILLGACRNYRNYELGAYAGEKLMELGSQESSAYILLSSIYTALGRSDDVERVRR 643

Query: 549 GSQKKGIIKIPGISFLNSTSR 569
             + +G+ K PG S++   S+
Sbjct: 644 LMKLRGVNKEPGCSWIELKSQ 664



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 103/389 (26%), Positives = 187/389 (48%), Gaps = 23/389 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  S L++ Y K G + +A  +FD IPE+N VSW+ +I GY++     ++ + F  M 
Sbjct: 147 DVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATIISGYAMERMAFEAWELFXLMR 206

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES------------------- 104
                 + F    VL A      +   + IH L +K GL S                   
Sbjct: 207 REEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNGLLSIASVGNALVTMYGKCGCLD 266

Query: 105 ---DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                FE   +   ++ +A++ G+       +A+ LF     +G  P+  T + VI  C 
Sbjct: 267 DALKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINACS 326

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            +G+    + IHG ++K G    +    +++DMY+    L  A + F  ++  D++ WT 
Sbjct: 327 DIGALEEGKQIHGYSLKAGYECQIYFMTALVDMYAKCGSLVDARKGFDYLKEPDIVLWTS 386

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+  +        AL ++  M+  RI+   + + +++   + L  L++GKQ+HAQ +  G
Sbjct: 387 MISGYAQNGENETALTLYCRMQMERIMPHELTMASVLRACSSLAALEQGKQIHAQTIKYG 446

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
              E+ + +++  MY+KCG L+    VF ++  + +++W A+ISG  QNG   +AL  F 
Sbjct: 447 FSLEVPIGSALSTMYAKCGSLEDGNLVFRRMPSRDIMTWNAMISGLSQNGEGLKALELFE 506

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALE 370
           ++R   T   D +T V++L+A   +  +E
Sbjct: 507 ELRHGTTKP-DYVTFVNVLSACSHMGLVE 534



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 107/395 (27%), Positives = 182/395 (46%), Gaps = 18/395 (4%)

Query: 146 LVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAI 205
           L P   + + ++  C         + IH   ++ G    V + NS++++Y+    +  A 
Sbjct: 6   LPPQHRSFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAK 65

Query: 206 QIFREMECKDVISWTRMMGLFVDFEYAGDA--LKIFREMRKSRIICDTVALLNLISVNAI 263
            +F  +  KDV+SW  ++  +      G +  +++F+ MR    + +      + +  + 
Sbjct: 66  LVFESITNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASS 125

Query: 264 LGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAI 323
             +   G Q HA  +      ++ + +S+I MY K G +  +R VF+ I E++ VSW  I
Sbjct: 126 SPETFGGLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATI 185

Query: 324 ISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG 383
           ISGY     A EA   F  MR+E+  + D     S+L+A      +    Q+H +A + G
Sbjct: 186 ISGYAMERMAFEAWELFXLMRREE-GAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNG 244

Query: 384 FPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALY 443
                SV N L++ Y KCG +D A   FE  G  +D ++W+ +I GY   G    AL L+
Sbjct: 245 LLSIASVGNALVTMYGKCGCLDDALKTFELSGD-KDDITWSAMITGYAQAGDSHEALNLF 303

Query: 444 HKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQE----HYGCVVD 499
           + M   G  P   T++ ++NAC   G   +G     + I    +K   E        +VD
Sbjct: 304 YNMHLNGNKPSEFTFVGVINACSDIGALEEG-----KQIHGYSLKAGYECQIYFMTALVD 358

Query: 500 LLARAGCLSDASGLAGKLLEGMGPNI--WRALLSG 532
           + A+ G L DA      L E   P+I  W +++SG
Sbjct: 359 MYAKCGSLVDARKGFDYLKE---PDIVLWTSMISG 390


>gi|297797117|ref|XP_002866443.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312278|gb|EFH42702.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 749

 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 156/552 (28%), Positives = 277/552 (50%), Gaps = 27/552 (4%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           ++L+  Y K      A  +FDEIP+K+V SW++++ G + NGF+   +  F  ++   ++
Sbjct: 102 NQLVIAYSKCSDFGSARQVFDEIPQKSVFSWTVLMVGATENGFYRDGIDYFVEILGCDIV 161

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES----------------------DL 106
           P+ + +   + A  G+ ++ +   +H  ++  G  S                       +
Sbjct: 162 PDEYALSAAIQACIGVDSIVVGEMVHAQVITRGFSSRTFVNTSLLGMYAKLGRIGDSCKV 221

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           F  L+N   VS NA+++GF++N L+ +A   F    G  + PN    ++V +    LG  
Sbjct: 222 FNSLENRNQVSWNAMISGFVSNGLYAEAYNSFLRMLGEEIRPNVACFISVSKAIGQLGDV 281

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFRE--MECKDVISWTRMMG 224
                I+ +  ++G+  ++ V  +++DM++    +  +  +F      C   + W  M+ 
Sbjct: 282 EKGRYINRIAFEIGMQSNIHVGTALIDMFAKCGCVTESWSVFVSNFSGCGVNLPWNAMIS 341

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            F    +  +A+ +F  M ++ I  D     + ++  A +  L+  KQLH  +   G   
Sbjct: 342 GFTISGHGEEAMLLFLRMCQNNIKRDVYTYCSTLNSIADMRSLEYVKQLHGMIWKSG-SI 400

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
            + L N+++  Y+KCG+LD+ R +F+   E + +SWT +++ Y Q+    +AL+ F +MR
Sbjct: 401 GVSLCNALMDAYAKCGELDAMRKLFDTWEESNQISWTTLVTAYSQSSEWEDALSVFSQMR 460

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
            E     + +T   +L +   L +LE   Q+H +  + GF R + V++ LI  Y+KCG+V
Sbjct: 461 -EMGFQPNQVTFSGVLASCASLCSLEYGQQVHSLTCKTGFARDKCVESVLIDMYAKCGSV 519

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
             A  VFE +    DV+SW  +I GY  +G  + AL L+ KM      P+S+T+L +L A
Sbjct: 520 RDAIKVFESLKD-PDVISWTAMISGYAQHGMAKDALELFRKMELVLPNPNSATFLCLLFA 578

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C H GL ++GL  F+ M E   + P  EHY CVVD+L R G L++A     K+       
Sbjct: 579 CSHGGLVDEGLRYFHLMEERYGLVPEIEHYACVVDILGRVGRLTEAWKFIMKMPIEPDEK 638

Query: 525 IWRALLSGCVLH 536
           +W  LL  C +H
Sbjct: 639 VWSTLLGACRVH 650



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 127/504 (25%), Positives = 236/504 (46%), Gaps = 46/504 (9%)

Query: 73  TMVGVLVAAAGLQNLELARSIHGLMVK------------------------FGLESDLFE 108
           +++ ++  +A  + L+ A+SIHG ++K                        FG    +F+
Sbjct: 63  SLIELIRESADERCLKKAKSIHGFVIKFQLIEKSLTVMLNQLVIAYSKCSDFGSARQVFD 122

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            +    + S   ++ G   N  ++  +  F    G  +VP+   +   I+ C+ + S  +
Sbjct: 123 EIPQKSVFSWTVLMVGATENGFYRDGIDYFVEILGCDIVPDEYALSAAIQACIGVDSIVV 182

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
            E++H   I  G      VN S+L MY+ L  +  + ++F  +E ++ +SW  M+  FV 
Sbjct: 183 GEMVHAQVITRGFSSRTFVNTSLLGMYAKLGRIGDSCKVFNSLENRNQVSWNAMISGFVS 242

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
                +A   F  M    I  +    +++      LGD+++G+ ++      G+QS + +
Sbjct: 243 NGLYAEAYNSFLRMLGEEIRPNVACFISVSKAIGQLGDVEKGRYINRIAFEIGMQSNIHV 302

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVS--WTAIISGYVQNGCAREALNQFIKMRQE 346
             ++I M++KCG +  S SVF        V+  W A+ISG+  +G   EA+  F++M Q 
Sbjct: 303 GTALIDMFAKCGCVTESWSVFVSNFSGCGVNLPWNAMISGFTISGHGEEAMLLFLRMCQN 362

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
                D  T  S L +  ++ +LE   QLHG+ +++G     S+ N L+ +Y+KCG +D 
Sbjct: 363 NIKR-DVYTYCSTLNSIADMRSLEYVKQLHGMIWKSGSIGV-SLCNALMDAYAKCGELDA 420

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
              +F+      + +SW T++  Y  +   E AL+++ +M E G  P+  T+  +L +C 
Sbjct: 421 MRKLFDTWE-ESNQISWTTLVTAYSQSSEWEDALSVFSQMREMGFQPNQVTFSGVLASC- 478

Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCV----VDLLARAGCLSDASGLAGKLLEGM- 521
            A L +   + + Q +     K       CV    +D+ A+ G + DA     K+ E + 
Sbjct: 479 -ASLCS---LEYGQQVHSLTCKTGFARDKCVESVLIDMYAKCGSVRDAI----KVFESLK 530

Query: 522 GPNI--WRALLSGCVLHVGRFQDA 543
            P++  W A++SG   H G  +DA
Sbjct: 531 DPDVISWTAMISGYAQH-GMAKDA 553



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 129/520 (24%), Positives = 240/520 (46%), Gaps = 38/520 (7%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ LL  Y K G+I ++  +F+ +  +N VSW+ +I G+  NG + ++  +F  M+   +
Sbjct: 202 NTSLLGMYAKLGRIGDSCKVFNSLENRNQVSWNAMISGFVSNGLYAEAYNSFLRMLGEEI 261

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES---------DLFE---------- 108
            PN    + V  A   L ++E  R I+ +  + G++S         D+F           
Sbjct: 262 RPNVACFISVSKAIGQLGDVEKGRYINRIAFEIGMQSNIHVGTALIDMFAKCGCVTESWS 321

Query: 109 ---------GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                    G+  P+    NA+++GF  +   ++A+LLF     + +  +  T  + +  
Sbjct: 322 VFVSNFSGCGVNLPW----NAMISGFTISGHGEEAMLLFLRMCQNNIKRDVYTYCSTLNS 377

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
              + S    + +HG+  K G I  VS+ N+++D Y+   +LDA  ++F   E  + ISW
Sbjct: 378 IADMRSLEYVKQLHGMIWKSGSI-GVSLCNALMDAYAKCGELDAMRKLFDTWEESNQISW 436

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           T ++  +       DAL +F +MR+     + V    +++  A L  L+ G+Q+H+    
Sbjct: 437 TTLVTAYSQSSEWEDALSVFSQMREMGFQPNQVTFSGVLASCASLCSLEYGQQVHSLTCK 496

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G   +  + + +I MY+KCG +  +  VF  + +  ++SWTA+ISGY Q+G A++AL  
Sbjct: 497 TGFARDKCVESVLIDMYAKCGSVRDAIKVFESLKDPDVISWTAMISGYAQHGMAKDALEL 556

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQ-LHGIAFEAGFPRYRSVQNCLISSY 398
           F KM +    + +S T + +L A      ++  L+  H +    G         C++   
Sbjct: 557 FRKM-ELVLPNPNSATFLCLLFACSHGGLVDEGLRYFHLMEERYGLVPEIEHYACVVDIL 615

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
            + G +  A+    +M    D   W+T++    V+G+ + A     K+      PD    
Sbjct: 616 GRVGRLTEAWKFIMKMPIEPDEKVWSTLLGACRVHGNIQLAKIAAQKVLSYN--PDDFAA 673

Query: 459 LSIL-NACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCV 497
           L +L N    AG    GL + N M  +   K +   + C+
Sbjct: 674 LVLLSNTYREAGNIEGGLNVRNMMKSQAMRKETGMSWICI 713


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 154/565 (27%), Positives = 288/565 (50%), Gaps = 28/565 (4%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML-SGL 67
           +KL    F     + A  LF  +P+ ++  +++++ G+S+N     S+  ++H+   + L
Sbjct: 48  TKLTQKLFDFSATRHARALFFSVPKPDIFLFNVLVRGFSLNDSPSSSISLYTHLRRNTNL 107

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG--------------------LESDLF 107
            P++FT    + A +  ++L L  + H ++  +G                        +F
Sbjct: 108 SPDNFTYAFAVAACSNDKHLMLLHA-HSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVF 166

Query: 108 EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRA 167
           +G+     V  N ++ G + N  F  ++ LF      G+  ++ T+  V+     L    
Sbjct: 167 DGMPERDTVLWNTMINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELK 226

Query: 168 LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
           +   I  L +K+G      V   ++ +YS   D++ A  +FR +   D+I++  M+  F 
Sbjct: 227 VGMGIQCLALKIGFGFCDYVLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFT 286

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
                  ++K+FRE+  S     +  ++ LI +++  G L     +H   V  G+     
Sbjct: 287 ANGGTECSVKLFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPT 346

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
           +S +  A+Y+K  ++D +R +F++  EK++V+W A+ISGY QNG    A++ F +M + +
Sbjct: 347 VSTAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTE 406

Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
             + +++T+ +IL+A  +L +L     +H +           V   L+  Y+KCGN+  A
Sbjct: 407 F-TPNAVTITTILSACAQLGSLSFGKWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEA 465

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
           + +F+ M   ++ V+WNT+I+GYG++G+G  AL LY++M   G  P + T+LS+L AC H
Sbjct: 466 WQLFDSMS-EKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSH 524

Query: 468 AGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWR 527
           AGL  +G  IF+ M+ + +++P  EHY C+VD+L R+G L  A     K+    GP +W 
Sbjct: 525 AGLVGEGEEIFHNMVNKYRIEPLIEHYACMVDILGRSGQLEKALEFIKKMPVEPGPAVWG 584

Query: 528 ALLSGCVLHVGRFQDAEALRSGSQK 552
            LL  C++H    +D +  R  S++
Sbjct: 585 TLLGACMIH----KDTDIARLASER 605



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 110/387 (28%), Positives = 193/387 (49%), Gaps = 28/387 (7%)

Query: 3   IDPYNS-----SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMK 57
           ID Y S     S L+  Y K  ++  A  +FD +PE++ V W+ +I+G   N   + S++
Sbjct: 136 IDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLVKNCCFDDSIQ 195

Query: 58  AFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL--------------- 102
            F  M+  G+  +S T+  VL AAA LQ L++   I  L +K G                
Sbjct: 196 LFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDYVLTGLISLYS 255

Query: 103 -------ESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLT 155
                     LF  +  P L++ NA+++GF  N   + +V LF     SG   ++ T++ 
Sbjct: 256 KCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGERVSSSTIVG 315

Query: 156 VIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKD 215
           +I      G   L   IHG  +K G+IL+ +V+ +   +Y+ L ++D A  +F E   K 
Sbjct: 316 LIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLARHLFDESPEKT 375

Query: 216 VISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
           V++W  M+  +        A+ +F+EM K+    + V +  ++S  A LG L  GK +H 
Sbjct: 376 VVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQLGSLSFGKWVHH 435

Query: 276 QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
            +    L+  + +S +++ MY+KCG++  +  +F+ ++EK+ V+W  +I GY  +G   E
Sbjct: 436 LIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEKNTVTWNTMIFGYGLHGYGHE 495

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTA 362
           AL  + +M     +   ++T +S+L A
Sbjct: 496 ALKLYNEMLHLGYNP-SAVTFLSVLYA 521


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 156/551 (28%), Positives = 271/551 (49%), Gaps = 65/551 (11%)

Query: 77  VLVAAAGLQN--------LELARSIHGLMVKFGLESDLF--------------------- 107
           ++  +AG++N        L+  + IH  +++ GL+ D +                     
Sbjct: 5   IVTKSAGIKNRLIQGFSCLKHLKHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRI 64

Query: 108 -EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
            +  K P +   N ++ G + N  FQ+++ +++  R  GL P++ T   V++ C  +   
Sbjct: 65  LDQTKEPNIFLFNTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDS 124

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
            L   +H L +K G   D  V  S++++Y+    +D A ++F ++  K+  SWT  +  +
Sbjct: 125 ELGVKMHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGY 184

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
           V      +A+ +FR + +  +  D+ +L+ ++S     GDL+ G+ +   +   G+   +
Sbjct: 185 VGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNV 244

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            ++ +++  Y KCG+++ +RSVF+ + EK++VSW+++I GY  NG  +EAL+ F KM  E
Sbjct: 245 FVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNE 304

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
                D   +V +L +   L ALE+      +     F     +   LI  Y+KCG +D 
Sbjct: 305 GLKP-DCYAMVGVLCSCARLGALELGDWASNLINGNEFLDNSVLGTALIDMYAKCGRMDR 363

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           A+ VF  M   +D V WN  I G  ++GH + AL L+ +M ++G  PD +T++ +L AC 
Sbjct: 364 AWEVFRGMR-KKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACT 422

Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIW 526
           HAGL  +G   FN M     + P  EHYGC+VDLL RAGCL +A  L   +       +W
Sbjct: 423 HAGLVEEGRRYFNSMECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVW 482

Query: 527 RALLSGCVLHVG---------------------------------RFQDAEALRSGSQKK 553
            ALL GC LH                                   ++++A  +RS   ++
Sbjct: 483 GALLGGCRLHRDTQLVEVVLKKLIALEPWHSGNYVLLSNIYAASHKWEEAAKIRSIMSER 542

Query: 554 GIIKIPGISFL 564
           G+ KIPG S++
Sbjct: 543 GVKKIPGYSWI 553



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 107/450 (23%), Positives = 203/450 (45%), Gaps = 26/450 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  +K+L   F  G    +  + D+  E N+  ++ +I G  +N   ++S++ +  M 
Sbjct: 41  DTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNTMIRGLVLNDCFQESIEIYHSMR 100

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
             GL P+SFT   VL A A + + EL   +H L+VK G E+D                  
Sbjct: 101 KEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCEADAFVKISLINLYTKCGFID 160

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +F+ + +    S  A ++G++     ++A+ +F      GL P++ +++ V+  C 
Sbjct: 161 NAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACK 220

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
             G     E I     + G++ +V V  +++D Y    +++ A  +F  M  K+++SW+ 
Sbjct: 221 RTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSS 280

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+  +       +AL +F +M    +  D  A++ ++   A LG L+ G      +    
Sbjct: 281 MIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGALELGDWASNLINGNE 340

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
                 L  ++I MY+KCG +D +  VF  + +K  V W A ISG   +G  ++AL  F 
Sbjct: 341 FLDNSVLGTALIDMYAKCGRMDRAWEVFRGMRKKDRVVWNAAISGLAMSGHVKDALGLFG 400

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN--CLISSYS 399
           +M +      D  T V +L A      +E   +    + E  F     +++  C++    
Sbjct: 401 QMEKSGIKP-DRNTFVGLLCACTHAGLVEEGRRYFN-SMECVFTLTPEIEHYGCMVDLLG 458

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYG 429
           + G +D A+ + + M    + + W  ++ G
Sbjct: 459 RAGCLDEAHQLIKSMPMEANAIVWGALLGG 488


>gi|357130605|ref|XP_003566938.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 670

 Score =  253 bits (645), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 158/555 (28%), Positives = 279/555 (50%), Gaps = 35/555 (6%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           LL++      +  A  +FD + +   + W+ +I GY+       +++ F  M  SG+ P+
Sbjct: 59  LLASPVSRHDMPYARKVFDRMAQPTAIVWNCMIRGYNSCHAPMDALELFRAMRRSGVSPD 118

Query: 71  SFTMVGVLVAAAGLQNLE---LARSIHGLMVKFGLESDLF--EGLKNPY----------- 114
           ++TM  V  ++A   + +      ++H L+ + G  SDLF   GL N Y           
Sbjct: 119 NYTMAAVAQSSAAFASWKGRATGDAVHALVQRIGFASDLFVMSGLINFYGASKSVEDARK 178

Query: 115 ---------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
                    +VS   +++ F     +   +   +  +  G  PN +T+++++  C  + +
Sbjct: 179 VFEEMHERDVVSWTLMISAFAQCGQWDNVLRSLDEMQSEGTKPNKITIISLLSACGQVRA 238

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMY---SCLMDLDAAIQIFREMECKDVISWTRM 222
                 ++    + G+  DV + N+++ MY    C+ D   A + F+ M  ++  SW  +
Sbjct: 239 VDKGLWVYARVDEYGIEADVDIRNALIGMYVKCGCMSD---AWKTFKGMPIRNTKSWNTL 295

Query: 223 MGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL 282
           +  FV      +AL +F EM    +I D + L++++S  A LGDL++G+ LH  +    +
Sbjct: 296 IDGFVQNGKHKEALTMFEEMLSDGVIPDVITLVSVLSTYAQLGDLQQGRYLHNYIKDHEI 355

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
             ++ L NS+I MY+KCGD+ ++  +F  +  + +VSWTA++ GYV+    R A N F  
Sbjct: 356 HCDIILQNSLINMYAKCGDMAAAEIIFENMARRDIVSWTAMVCGYVKGLQFRTAFNLFDD 415

Query: 343 MRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
           M+         + LVS+L+A  +L AL+   ++H    E        +++ L+  Y+KCG
Sbjct: 416 MKVRDV-MASEMALVSLLSACSQLGALDKGREIHSYIKEKSVRTDMWLESALVDMYAKCG 474

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV-PDSSTYLSI 461
            +D A  +F  M   +  ++WN +I G    G G+ A+AL+ ++ +  +  PD+ T   +
Sbjct: 475 CIDAAAEIFSRMRH-KQTLAWNAMIGGLASQGQGKEAVALFEQLLKLRDPKPDAITLKVV 533

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L AC H G+ ++GL  FN M+    V P  EHYGC+VDLL RAG L +A     K+    
Sbjct: 534 LCACTHVGMVDEGLHYFNLMLTLGIV-PDNEHYGCIVDLLGRAGLLDEAYNFIQKMPIQP 592

Query: 522 GPNIWRALLSGCVLH 536
            P IW +LL+ C +H
Sbjct: 593 NPVIWGSLLAACRVH 607



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 108/471 (22%), Positives = 237/471 (50%), Gaps = 33/471 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  S L++ Y  S  +++A  +F+E+ E++VVSW+++I  ++  G  +  +++   M 
Sbjct: 156 DLFVMSGLINFYGASKSVEDARKVFEEMHERDVVSWTLMISAFAQCGQWDNVLRSLDEMQ 215

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------- 106
             G  PN  T++ +L A   ++ ++    ++  + ++G+E+D+                 
Sbjct: 216 SEGTKPNKITIISLLSACGQVRAVDKGLWVYARVDEYGIEADVDIRNALIGMYVKCGCMS 275

Query: 107 -----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                F+G+      S N ++ GF+ N   ++A+ +F      G++P+ +T+++V+    
Sbjct: 276 DAWKTFKGMPIRNTKSWNTLIDGFVQNGKHKEALTMFEEMLSDGVIPDVITLVSVLSTYA 335

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            LG       +H       +  D+ + NS+++MY+   D+ AA  IF  M  +D++SWT 
Sbjct: 336 QLGDLQQGRYLHNYIKDHEIHCDIILQNSLINMYAKCGDMAAAEIIFENMARRDIVSWTA 395

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+  +V       A  +F +M+   ++   +AL++L+S  + LG L +G+++H+ +    
Sbjct: 396 MVCGYVKGLQFRTAFNLFDDMKVRDVMASEMALVSLLSACSQLGALDKGREIHSYIKEKS 455

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           +++++ L ++++ MY+KCG +D++  +F+++  K  ++W A+I G    G  +EA+  F 
Sbjct: 456 VRTDMWLESALVDMYAKCGCIDAAAEIFSRMRHKQTLAWNAMIGGLASQGQGKEAVALFE 515

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           ++ + +    D+ITL  +L A   +  ++  L    +    G         C++    + 
Sbjct: 516 QLLKLRDPKPDAITLKVVLCACTHVGMVDEGLHYFNLMLTLGIVPDNEHYGCIVDLLGRA 575

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV 452
           G +D AY   ++M    + V W +++           A  ++H+M E G++
Sbjct: 576 GLLDEAYNFIQKMPIQPNPVIWGSLL----------AACRVHHRM-ELGKI 615



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/355 (27%), Positives = 168/355 (47%), Gaps = 18/355 (5%)

Query: 136 LLFNFFRGSGLVPNAVTMLTVIRGCV-----ALGSRALCELIHGLTIKLGLILDVSVNNS 190
           + + +FR     PN  +     R  +     A  SRA    +HG  ++  L  D  V   
Sbjct: 1   MRYLYFR-----PNTTSRARACRDSLLAHLDACASRANLAELHGRLVRAHLGSDPCVAGR 55

Query: 191 VLDMYSCLM---DLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRI 247
           ++ + +  +   D+  A ++F  M     I W  M+  +       DAL++FR MR+S +
Sbjct: 56  LVTLLASPVSRHDMPYARKVFDRMAQPTAIVWNCMIRGYNSCHAPMDALELFRAMRRSGV 115

Query: 248 ICDTVALLNLISVNAILGDLK---RGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDS 304
             D   +  +   +A     K    G  +HA V   G  S+L + + +I  Y     ++ 
Sbjct: 116 SPDNYTMAAVAQSSAAFASWKGRATGDAVHALVQRIGFASDLFVMSGLINFYGASKSVED 175

Query: 305 SRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASG 364
           +R VF ++ E+ +VSWT +IS + Q G     L    +M+ E T   + IT++S+L+A G
Sbjct: 176 ARKVFEEMHERDVVSWTLMISAFAQCGQWDNVLRSLDEMQSEGTKP-NKITIISLLSACG 234

Query: 365 ELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWN 424
           ++ A++  L ++    E G      ++N LI  Y KCG +  A+  F+ M  +R+  SWN
Sbjct: 235 QVRAVDKGLWVYARVDEYGIEADVDIRNALIGMYVKCGCMSDAWKTFKGMP-IRNTKSWN 293

Query: 425 TIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFN 479
           T+I G+  NG  + AL ++ +M   G +PD  T +S+L+     G    G  + N
Sbjct: 294 TLIDGFVQNGKHKEALTMFEEMLSDGVIPDVITLVSVLSTYAQLGDLQQGRYLHN 348



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 138/294 (46%), Gaps = 17/294 (5%)

Query: 272 QLHAQVVLGGLQSELRLSNSIIAMYSKC---GDLDSSRSVFNQITEKSLVSWTAIISGYV 328
           +LH ++V   L S+  ++  ++ + +      D+  +R VF+++ + + + W  +I GY 
Sbjct: 36  ELHGRLVRAHLGSDPCVAGRLVTLLASPVSRHDMPYARKVFDRMAQPTAIVWNCMIRGYN 95

Query: 329 QNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALE---ICLQLHGIAFEAGFP 385
                 +AL  F  MR+    S D+ T+ ++  +S   A+ +       +H +    GF 
Sbjct: 96  SCHAPMDALELFRAMRRSGV-SPDNYTMAAVAQSSAAFASWKGRATGDAVHALVQRIGFA 154

Query: 386 RYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHK 445
               V + LI+ Y    +V+ A  VFEEM   RDVVSW  +I  +   G  +  L    +
Sbjct: 155 SDLFVMSGLINFYGASKSVEDARKVFEEM-HERDVVSWTLMISAFAQCGQWDNVLRSLDE 213

Query: 446 MTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAG 505
           M   G  P+  T +S+L+ACG     + GL ++ + ++E  ++   +    ++ +  + G
Sbjct: 214 MQSEGTKPNKITIISLLSACGQVRAVDKGLWVYAR-VDEYGIEADVDIRNALIGMYVKCG 272

Query: 506 CLSDASGLAGKLLEGM---GPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGII 556
           C+SD    A K  +GM       W  L+ G V + G+ ++A  +       G+I
Sbjct: 273 CMSD----AWKTFKGMPIRNTKSWNTLIDGFVQN-GKHKEALTMFEEMLSDGVI 321


>gi|125528820|gb|EAY76934.1| hypothetical protein OsI_04892 [Oryza sativa Indica Group]
          Length = 505

 Score =  253 bits (645), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 140/356 (39%), Positives = 211/356 (59%), Gaps = 23/356 (6%)

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
           L ++F+  G +  AAG+ NL LA  IHG  +K  LES+                      
Sbjct: 75  LTDAFSSFGTVTEAAGMGNLVLAECIHGWAMKSLLESNPFVRTALLDSYAKCGRPTKAWA 134

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGS-GLVPNAVTMLTVIRGCVALG 164
           LF  +++P +V+ NA+++G ++N LF++A+L+F     S G V N VTM+++ +     G
Sbjct: 135 LFGEMRDPGIVTWNALISGLVHNDLFEEALLVFKRLLFSFGPVHNVVTMISIAQASAGCG 194

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
              LCE  H  ++K+GL  DVSV NS+L MY     L    +IF+++   DV+SWT MMG
Sbjct: 195 DLGLCESAHAYSVKIGLDSDVSVTNSILGMYLSFGSLAIGREIFKKIAVNDVVSWTMMMG 254

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
             ++   A + + +F +MR S I+ D VAL+ +    A LGD + GK +H ++V+ G   
Sbjct: 255 FLLEEAQAIEVIHMFVQMRLSGIVPDRVALVTVAQACAHLGDGRIGKLVHNEIVIRGFSG 314

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           EL   NS+I MYSKC DL S+R +F+   EKSLVSWTA++S Y++NG A E +  F KMR
Sbjct: 315 ELPAVNSLITMYSKCEDLSSARLLFDGTMEKSLVSWTAMVSAYIENGYALEGMYLFAKMR 374

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            E +  +DS+TLV++L A  E+A  E+C+QLH   +++G   Y+ V N LI+ Y +
Sbjct: 375 HEGSFMIDSVTLVTLLLACYEVAKFELCIQLHAYCYKSGLCLYKPVLNTLIAVYVR 430



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/329 (27%), Positives = 161/329 (48%), Gaps = 25/329 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           +P+  + LL +Y K G+  +A  LF E+ +  +V+W+ +I G   N   E+++  F  ++
Sbjct: 112 NPFVRTALLDSYAKCGRPTKAWALFGEMRDPGIVTWNALISGLVHNDLFEEALLVFKRLL 171

Query: 64  LS-GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
            S G + N  TM+ +  A+AG  +L L  S H   VK GL+SD                 
Sbjct: 172 FSFGPVHNVVTMISIAQASAGCGDLGLCESAHAYSVKIGLDSDVSVTNSILGMYLSFGSL 231

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +F+ +    +VS   ++   +      + + +F   R SG+VP+ V ++TV + C
Sbjct: 232 AIGREIFKKIAVNDVVSWTMMMGFLLEEAQAIEVIHMFVQMRLSGIVPDRVALVTVAQAC 291

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             LG   + +L+H   +  G   ++   NS++ MYS   DL +A  +F     K ++SWT
Sbjct: 292 AHLGDGRIGKLVHNEIVIRGFSGELPAVNSLITMYSKCEDLSSARLLFDGTMEKSLVSWT 351

Query: 221 RMMGLFVDFEYAGDALKIFREMR-KSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
            M+  +++  YA + + +F +MR +   + D+V L+ L+     +   +   QLHA    
Sbjct: 352 AMVSAYIENGYALEGMYLFAKMRHEGSFMIDSVTLVTLLLACYEVAKFELCIQLHAYCYK 411

Query: 280 GGLQSELRLSNSIIAMYSKCG-DLDSSRS 307
            GL     + N++IA+Y +   D +S RS
Sbjct: 412 SGLCLYKPVLNTLIAVYVRIMYDKNSGRS 440



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 87/319 (27%), Positives = 153/319 (47%), Gaps = 4/319 (1%)

Query: 149 NAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIF 208
           +A +    +     +G+  L E IHG  +K  L  +  V  ++LD Y+       A  +F
Sbjct: 77  DAFSSFGTVTEAAGMGNLVLAECIHGWAMKSLLESNPFVRTALLDSYAKCGRPTKAWALF 136

Query: 209 REMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKS-RIICDTVALLNLISVNAILGDL 267
            EM    +++W  ++   V  +   +AL +F+ +  S   + + V ++++   +A  GDL
Sbjct: 137 GEMRDPGIVTWNALISGLVHNDLFEEALLVFKRLLFSFGPVHNVVTMISIAQASAGCGDL 196

Query: 268 KRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGY 327
              +  HA  V  GL S++ ++NSI+ MY   G L   R +F +I    +VSWT ++   
Sbjct: 197 GLCESAHAYSVKIGLDSDVSVTNSILGMYLSFGSLAIGREIFKKIAVNDVVSWTMMMGFL 256

Query: 328 VQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRY 387
           ++   A E ++ F++MR       D + LV++  A   L    I   +H      GF   
Sbjct: 257 LEEAQAIEVIHMFVQMRLSGIVP-DRVALVTVAQACAHLGDGRIGKLVHNEIVIRGFSGE 315

Query: 388 RSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMT 447
               N LI+ YSKC ++  A ++F+     + +VSW  ++  Y  NG+    + L+ KM 
Sbjct: 316 LPAVNSLITMYSKCEDLSSARLLFDGT-MEKSLVSWTAMVSAYIENGYALEGMYLFAKMR 374

Query: 448 ETGE-VPDSSTYLSILNAC 465
             G  + DS T +++L AC
Sbjct: 375 HEGSFMIDSVTLVTLLLAC 393



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 118/238 (49%), Gaps = 3/238 (1%)

Query: 246 RIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSS 305
           R + D  +    ++  A +G+L   + +H   +   L+S   +  +++  Y+KCG    +
Sbjct: 73  RSLTDAFSSFGTVTEAAGMGNLVLAECIHGWAMKSLLESNPFVRTALLDSYAKCGRPTKA 132

Query: 306 RSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGE 365
            ++F ++ +  +V+W A+ISG V N    EAL  F ++        + +T++SI  AS  
Sbjct: 133 WALFGEMRDPGIVTWNALISGLVHNDLFEEALLVFKRLLFSFGPVHNVVTMISIAQASAG 192

Query: 366 LAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNT 425
              L +C   H  + + G     SV N ++  Y   G++ +   +F+++  + DVVSW T
Sbjct: 193 CGDLGLCESAHAYSVKIGLDSDVSVTNSILGMYLSFGSLAIGREIFKKIA-VNDVVSW-T 250

Query: 426 IIYGYGV-NGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMI 482
           ++ G+ +        + ++ +M  +G VPD    +++  AC H G    G ++ N+++
Sbjct: 251 MMMGFLLEEAQAIEVIHMFVQMRLSGIVPDRVALVTVAQACAHLGDGRIGKLVHNEIV 308


>gi|413952893|gb|AFW85542.1| hypothetical protein ZEAMMB73_270374 [Zea mays]
          Length = 716

 Score =  253 bits (645), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 180/612 (29%), Positives = 290/612 (47%), Gaps = 61/612 (9%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           +KLLS Y   G +  A  +FD  P  +  S+  ++        H  ++     M      
Sbjct: 101 TKLLSCYAALGDLASARMVFDGTPRPDAYSYGAMLWCLVQTERHADAVALHHDMRRRRPC 160

Query: 69  P---NSFTMVGVLVAAAGLQNLELARSIHGLMVKFG-------------------LE--S 104
           P   + F +   L A          RS+H   +K G                   LE   
Sbjct: 161 PEAQDDFVLSLALKACIRSAEYSYGRSLHCDAIKVGGADGFVMNSLVDMYAKAEDLECAR 220

Query: 105 DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
            +FE + +  +VS  ++++G + N      +LLFN  R   + P+  T+ TVI  C AL 
Sbjct: 221 KVFERIPDRNVVSWTSMISGCVQNGFASDGLLLFNKMRQDNVPPSEYTIATVITACSALF 280

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
                  +HG  IK GL+ +  ++ ++LDMY    +LD A  +F E+   D++ WT M+ 
Sbjct: 281 GLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGELDHARCVFDELSYIDLVLWTTMIV 340

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            +       DAL++F + R + I  ++V    ++S +A L DL  GK +H   V  GL  
Sbjct: 341 GYTQNGNPLDALRLFLDKRFANIAPNSVTTATVLSASAQLRDLSLGKSIHGLAVKLGLVE 400

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
              + N+++ MY+KC  +  +  +F +I+ K +V+W ++ISGY +N    +AL  F +M 
Sbjct: 401 YNVVGNALVDMYAKCQAVSEADRIFGRISNKDVVAWNSMISGYAENNMGDDALMLFKQMS 460

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
            + + S D+I++V+ L+AS  L  L I   +HG A +  F     V   L++ Y+KCG++
Sbjct: 461 LQGS-SPDAISVVNALSASVCLGDLLIGKSIHGYAVKHAFVSNIYVDTALLNLYNKCGDL 519

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
             A  VF+EM   R+ V+W  +I GYG+ G    ++ L+ +M + G  P+   + SIL+ 
Sbjct: 520 LSARRVFDEMND-RNSVTWCAMIGGYGMQGDSAGSIHLFGEMLKDGVYPNDIAFTSILST 578

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C H+G+   G   F+ M +   + PS +HY C+VD+LARAG L DA      +      +
Sbjct: 579 CSHSGMVTAGKRYFDSMAQHFNITPSMKHYACMVDVLARAGNLEDALEFIDNMPMQADTS 638

Query: 525 IWRALLSGCVLHVGRFQDAE----------------------------------ALRSGS 550
           +W A L GC LH  R Q AE                                  A+R   
Sbjct: 639 VWGAFLHGCELH-SRLQFAEEAIKRMMVLHPERPDLYVLISNLYTSNGMWDKSLAIRRWM 697

Query: 551 QKKGIIKIPGIS 562
           Q+KG++K+PG S
Sbjct: 698 QEKGLVKLPGCS 709



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 142/511 (27%), Positives = 246/511 (48%), Gaps = 31/511 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L+  Y K+  ++ A  +F+ IP++NVVSW+ +I G   NGF    +  F+ M 
Sbjct: 199 DGFVMNSLVDMYAKAEDLECARKVFERIPDRNVVSWTSMISGCVQNGFASDGLLLFNKMR 258

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
              + P+ +T+  V+ A + L  L   R +HG ++K GL S+                  
Sbjct: 259 QDNVPPSEYTIATVITACSALFGLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGELD 318

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +F+ L    LV    ++ G+  N     A+ LF   R + + PN+VT  TV+    
Sbjct: 319 HARCVFDELSYIDLVLWTTMIVGYTQNGNPLDALRLFLDKRFANIAPNSVTTATVLSASA 378

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            L   +L + IHGL +KLGL+    V N+++DMY+    +  A +IF  +  KDV++W  
Sbjct: 379 QLRDLSLGKSIHGLAVKLGLVEYNVVGNALVDMYAKCQAVSEADRIFGRISNKDVVAWNS 438

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+  + +     DAL +F++M       D ++++N +S +  LGDL  GK +H   V   
Sbjct: 439 MISGYAENNMGDDALMLFKQMSLQGSSPDAISVVNALSASVCLGDLLIGKSIHGYAVKHA 498

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
             S + +  +++ +Y+KCGDL S+R VF+++ +++ V+W A+I GY   G +  +++ F 
Sbjct: 499 FVSNIYVDTALLNLYNKCGDLLSARRVFDEMNDRNSVTWCAMIGGYGMQGDSAGSIHLFG 558

Query: 342 KMRQEKTDSVDSITLVSILTA---SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
           +M ++     D I   SIL+    SG + A +         F    P  +    C++   
Sbjct: 559 EMLKDGVYPND-IAFTSILSTCSHSGMVTAGKRYFDSMAQHFNIT-PSMKHYA-CMVDVL 615

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETA-LALYHKMTETGEVPDSST 457
           ++ GN++ A    + M    D   W   ++G  ++   + A  A+   M    E PD   
Sbjct: 616 ARAGNLEDALEFIDNMPMQADTSVWGAFLHGCELHSRLQFAEEAIKRMMVLHPERPD--L 673

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVK 488
           Y+ I N     G+ +  L I   M E+  VK
Sbjct: 674 YVLISNLYTSNGMWDKSLAIRRWMQEKGLVK 704



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 108/368 (29%), Positives = 183/368 (49%), Gaps = 21/368 (5%)

Query: 175 LTIKLGLIL-DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAG 233
           LT   GL+L  +     +L  Y+ L DL +A  +F      D  S+  M+   V  E   
Sbjct: 86  LTHPQGLLLGSLRARTKLLSCYAALGDLASARMVFDGTPRPDAYSYGAMLWCLVQTERHA 145

Query: 234 DALKIFREMRKSRIICDTVALLNL-ISVNAIL--GDLKRGKQLHAQVV-LGGLQSELRLS 289
           DA+ +  +MR+ R   +      L +++ A +   +   G+ LH   + +GG  ++  + 
Sbjct: 146 DAVALHHDMRRRRPCPEAQDDFVLSLALKACIRSAEYSYGRSLHCDAIKVGG--ADGFVM 203

Query: 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD 349
           NS++ MY+K  DL+ +R VF +I ++++VSWT++ISG VQNG A + L  F KMRQ+   
Sbjct: 204 NSLVDMYAKAEDLECARKVFERIPDRNVVSWTSMISGCVQNGFASDGLLLFNKMRQDNVP 263

Query: 350 SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYI 409
             +  T+ +++TA   L  L     +HG   + G      +   L+  Y KCG +D A  
Sbjct: 264 PSE-YTIATVITACSALFGLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGELDHARC 322

Query: 410 VFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH-- 467
           VF+E+ ++ D+V W T+I GY  NG+   AL L+         P+S T  ++L+A     
Sbjct: 323 VFDELSYI-DLVLWTTMIVGYTQNGNPLDALRLFLDKRFANIAPNSVTTATVLSASAQLR 381

Query: 468 ---AGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
               G +  GL +   ++E N V         +VD+ A+   +S+A  + G+ +      
Sbjct: 382 DLSLGKSIHGLAVKLGLVEYNVVG------NALVDMYAKCQAVSEADRIFGR-ISNKDVV 434

Query: 525 IWRALLSG 532
            W +++SG
Sbjct: 435 AWNSMISG 442


>gi|449505835|ref|XP_004162581.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g02750-like [Cucumis sativus]
          Length = 741

 Score =  253 bits (645), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 186/621 (29%), Positives = 293/621 (47%), Gaps = 117/621 (18%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           I  YNS  ++S Y K+G+I  A  LFD +P++N+VSW+ +I GY  N   E + + F  M
Sbjct: 46  IVTYNS--MISAYAKNGRIANARELFDLMPQRNLVSWNSMIAGYLHNELVEDAARLFDRM 103

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSC-NAI 121
               +   S+T++       G   LE AR             +LF  L +     C NA+
Sbjct: 104 FKRDIY--SWTLMITCYTRIG--ELEKAR-------------ELFNLLPDKQDTVCRNAL 146

Query: 122 VAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL-CELIHGLTIKLG 180
           +AG+   +LF++A  LF+      LV N V+  +++ G    G   L  +    +  +  
Sbjct: 147 IAGYAKKRLFREAKKLFD----EMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAMGER-- 200

Query: 181 LILDVSVNNSVLDMYSCLMDLDAAIQIFR------------------------------- 209
              +V   N ++D Y  + DLD+A   F+                               
Sbjct: 201 ---NVVSWNLMVDGYVGVGDLDSAWMFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFN 257

Query: 210 EMECKDVISWTRMMGLFVDFEYAGDALKIFREMR---------------------KSRII 248
           EM  K+++SW  M+G +V      DA K+F EM                      ++R I
Sbjct: 258 EMPTKNLVSWNAMIGAYVRENQIDDAYKLFMEMPEKDSVSWTAMINGYVRVGKLLQAREI 317

Query: 249 CDTVALLNLISVNAIL------GDLKRGKQLHAQVVL----------------GGLQSEL 286
            + +   N+ +  A++      G +    ++ +Q+ +                G     L
Sbjct: 318 LNLMPYKNIAAQTAMINGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTDEAL 377

Query: 287 RL-----------SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
           RL            N++IA Y++ G +D +  +FN++ E+++VSW ++I+GYVQNG   E
Sbjct: 378 RLFQEMVCKDMVSWNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFE 437

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLI 395
           ALN FI M+Q+  +  D  T+V  L AS  LAAL + +QLH +  + GF     V+N ++
Sbjct: 438 ALNCFILMKQQ-GEKPDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAIL 496

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
           + Y+K G V  A  VF E+   +DVVSWN++I GY +NG G+ A+ L+  M   G +PD 
Sbjct: 497 TMYAKSGRVPEAENVFAEIK-XKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDE 555

Query: 456 STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAG 515
            T+  +L+AC H G  + GL +F  M E   +KP  EHY CV++LL R G L +A  +  
Sbjct: 556 VTFTGLLSACNHGGFVDQGLNLFKSMTETYSIKPQSEHYACVINLLGRVGRLEEAVEIVQ 615

Query: 516 KLLEGMGPNIWRALLSGCVLH 536
            +       IW ALL  C +H
Sbjct: 616 GMKTVSSAKIWGALLWACRIH 636



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 92/181 (50%), Gaps = 22/181 (12%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C D  + + +++ Y ++G++ +A  +F+E+ E+NVVSW+ +I GY  NG + +++  F  
Sbjct: 385 CKDMVSWNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFIL 444

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL--------------- 106
           M   G  P+  T+V  L A+A L  L +   +H L +K G  +DL               
Sbjct: 445 MKQQGEKPDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGR 504

Query: 107 -------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                  F  +K   +VS N+++AG+  N   ++AV LF      G++P+ VT   ++  
Sbjct: 505 VPEAENVFAEIKXKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSA 564

Query: 160 C 160
           C
Sbjct: 565 C 565



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 130/312 (41%), Gaps = 66/312 (21%)

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
            N  I+   + G ++ + +VF ++TE+++V++ ++IS Y +NG    A   F  M Q   
Sbjct: 18  QNLRISQLGRSGRIEEAVAVFLKMTERNIVTYNSMISAYAKNGRIANARELFDLMPQRNL 77

Query: 349 DSVDSI--------------------------TLVSILTASGELAALEICLQLHGI---- 378
            S +S+                          +   ++T    +  LE   +L  +    
Sbjct: 78  VSWNSMIAGYLHNELVEDAARLFDRMFKRDIYSWTLMITCYTRIGELEKARELFNLLPDK 137

Query: 379 -------AFEAGFPRYRSVQ-----------------NCLISSYSKCGNVDLAYIVFEEM 414
                  A  AG+ + R  +                 N ++S Y+K G + L    FE M
Sbjct: 138 QDTVCRNALIAGYAKKRLFREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAM 197

Query: 415 GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDG 474
           G  R+VVSWN ++ GY   G  ++A   + K+      P+  +++++L+   H G   + 
Sbjct: 198 G-ERNVVSWNLMVDGYVGVGDLDSAWMFFKKIP----TPNVVSWVTMLSGFAHYGRMTEA 252

Query: 475 LVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCV 534
             +FN+M  +N V      +  ++    R   + DA  L  ++ E    + W A+++G V
Sbjct: 253 RNLFNEMPTKNLVS-----WNAMIGAYVRENQIDDAYKLFMEMPEKDSVS-WTAMINGYV 306

Query: 535 LHVGRFQDAEAL 546
             VG+   A  +
Sbjct: 307 -RVGKLLQAREI 317


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 1058

 Score =  252 bits (644), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 175/580 (30%), Positives = 281/580 (48%), Gaps = 66/580 (11%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           +++ Y    ++ EA  LFD++PE+N VSW ++I GY     + ++   F  M  +   P+
Sbjct: 301 VVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPD 360

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKL 130
               V VL A  GL +LEL  S+  + +K G E D+  G         +AI+  +  N  
Sbjct: 361 QSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVG---------SAILNAYTRNGS 411

Query: 131 FQQAVLLFNF---------------FRGSGLVPNAVTMLT-VIRGCVALGSRALCELIH- 173
              A+  F                 F   G + +A+ +   V    VA  +  +      
Sbjct: 412 LDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTVATKTAMMTAYAQV 471

Query: 174 GLTIKLGLILDVSVN------NSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
           G   K  LI D  +N      N+++  Y+    L  A  +F++M  K+  SW  M+  FV
Sbjct: 472 GRIQKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFV 531

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
             E + +AL++  E+ +S  +    +  + +S  A +GD++ G+ +H+  +  G Q    
Sbjct: 532 QNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSY 591

Query: 288 LSNSIIAMYSKCGD-------------------------------LDSSRSVFNQITEKS 316
           + N +I+MY+KCG+                               LD +R VF ++ ++ 
Sbjct: 592 VMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRD 651

Query: 317 LVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLH 376
           +VSWTAIIS YVQ G    AL+ F+ M        + +T+ S+L+A G L A+++  Q H
Sbjct: 652 VVSWTAIISAYVQAGHGEVALDLFLDMLARGIKP-NQLTVTSLLSACGNLGAIKLGEQFH 710

Query: 377 GIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHG 436
            + F+ GF  +  V N LI+ Y KCG  D  + VFEEM    D+++WN ++ G   NG G
Sbjct: 711 ALIFKLGFDTFLFVGNSLITMYFKCGYED-GFCVFEEMP-EHDLITWNAVLVGCAQNGLG 768

Query: 437 ETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGC 496
           + A+ ++ +M   G +PD  ++L +L AC HAGL ++G   FN M ++  + P   HY C
Sbjct: 769 KEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPLVYHYTC 828

Query: 497 VVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
           +VDLL RAG LS+A  L   +       IW ALL  C +H
Sbjct: 829 MVDLLGRAGYLSEAEALIENMPVKPDSVIWEALLGACRIH 868



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 137/490 (27%), Positives = 229/490 (46%), Gaps = 58/490 (11%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           LL+ Y K G+I+EA  +F+ + E+NVVSW+ +I GY  NG  + + K F  M       N
Sbjct: 239 LLTGYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEMPEK----N 294

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKL 130
             +   V+        +  AR             +LF+ +     VS   +++G+++   
Sbjct: 295 VASWNSVVTGYCHCYRMSEAR-------------ELFDQMPERNSVSWMVMISGYVHISD 341

Query: 131 FQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNS 190
           + +A  +F     +   P+    + V+     L    L   +  + IK G   DV V ++
Sbjct: 342 YWEAWDVFVKMCRTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSA 401

Query: 191 VLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICD 250
           +L+ Y+    LD A+  F  M  ++  SWT M+  F       DA++++  + +  +   
Sbjct: 402 ILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTVATK 461

Query: 251 TVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFN 310
           T     +++  A +G +++ + +  ++    L   +   N+IIA Y++ G L  ++ +F 
Sbjct: 462 TA----MMTAYAQVGRIQKARLIFDEI----LNPNVVAWNAIIAGYTQNGMLKEAKDLFQ 513

Query: 311 QITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALE 370
           ++  K+  SW A+I+G+VQN  +REAL   I++ +  +   DS +  S L+A   +  +E
Sbjct: 514 KMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDS-SFTSALSACANIGDVE 572

Query: 371 ICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV-------------------------- 404
           I   +H +A + G      V N LIS Y+KCGNV                          
Sbjct: 573 IGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLS 632

Query: 405 -----DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
                D A +VFE+M   RDVVSW  II  Y   GHGE AL L+  M   G  P+  T  
Sbjct: 633 ENYMLDDARVVFEKMP-KRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVT 691

Query: 460 SILNACGHAG 469
           S+L+ACG+ G
Sbjct: 692 SLLSACGNLG 701



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 115/512 (22%), Positives = 222/512 (43%), Gaps = 57/512 (11%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           S +L+ Y ++G +  A + F+ +PE+N  SW+ +I  ++  G  + +++ +  +    + 
Sbjct: 400 SAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTVA 459

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL------------------ESDLFEGL 110
               T   ++ A A +  ++ AR I   ++   +                    DLF+ +
Sbjct: 460 ----TKTAMMTAYAQVGRIQKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKM 515

Query: 111 KNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCE 170
                 S  A++AGF+ N+  ++A+ L      SG VP+  +  + +  C  +G   +  
Sbjct: 516 PVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGR 575

Query: 171 LIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK---------------- 214
           +IH L IK G   +  V N ++ MY+   +++    +FR +  K                
Sbjct: 576 VIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENY 635

Query: 215 ---------------DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLIS 259
                          DV+SWT ++  +V   +   AL +F +M    I  + + + +L+S
Sbjct: 636 MLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLS 695

Query: 260 VNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVS 319
               LG +K G+Q HA +   G  + L + NS+I MY KCG  D    VF ++ E  L++
Sbjct: 696 ACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCGYEDGF-CVFEEMPEHDLIT 754

Query: 320 WTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAAL-EICLQLHGI 378
           W A++ G  QNG  +EA+  F +M  E     D ++ + +L A      + E     + +
Sbjct: 755 WNAVLVGCAQNGLGKEAIKIFEQMEVEGILP-DQMSFLGVLCACSHAGLVDEGWAHFNSM 813

Query: 379 AFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGET 438
             + G         C++    + G +  A  + E M    D V W  ++    ++ + E 
Sbjct: 814 TQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEALLGACRIHRNVEL 873

Query: 439 ALALYHKMTETGEVPDSSTYLSILNACGHAGL 470
              +  ++ +  + P S+TY+ + N     G+
Sbjct: 874 GQRVAERLFQMTK-PKSATYVLLSNLFASQGM 904



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 98/381 (25%), Positives = 179/381 (46%), Gaps = 47/381 (12%)

Query: 201 LDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIF-------------------RE 241
           ++ A ++F EM  +DV+SW  M+  +       +A  +F                   +E
Sbjct: 187 VEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGKNIRTWTILLTGYAKE 246

Query: 242 MR--KSRIICDTVALLNLISVNAIL------GDLKRGKQLHAQVVLGGLQSELRLSNSII 293
            R  ++R + +++   N++S NA++      GDLK  ++L  ++    + S     NS++
Sbjct: 247 GRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEMPEKNVAS----WNSVV 302

Query: 294 AMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDS 353
             Y  C  +  +R +F+Q+ E++ VSW  +ISGYV      EA + F+KM +       S
Sbjct: 303 TGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQS 362

Query: 354 ITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEE 413
           I  V +L+A   L  LE+   L  IA + G+     V + ++++Y++ G++DLA   FE 
Sbjct: 363 I-FVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFET 421

Query: 414 MGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTND 473
           M   R+  SW T+I  +   G  + A+ LY ++ E       +T  +++ A    G    
Sbjct: 422 MP-ERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQ----TVATKTAMMTAYAQVGRIQK 476

Query: 474 GLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGC 533
             +IF++++  N V      +  ++    + G L +A  L  K+      + W A+++G 
Sbjct: 477 ARLIFDEILNPNVVA-----WNAIIAGYTQNGMLKEAKDLFQKMPVKNSAS-WAAMIAGF 530

Query: 534 VLHVGRFQDAEAL----RSGS 550
           V +    +  E L    RSGS
Sbjct: 531 VQNEESREALELLIELHRSGS 551



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 113/251 (45%), Gaps = 37/251 (14%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D  + + L+S   ++  + +A  +F+++P+++VVSW+ +I  Y   G  E ++  F  M+
Sbjct: 620 DTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDML 679

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------- 106
             G+ PN  T+  +L A   L  ++L    H L+ K G ++ L                 
Sbjct: 680 ARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCGYED 739

Query: 107 ----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA 162
               FE +    L++ NA++ G   N L ++A+ +F      G++P+ ++ L V+  C  
Sbjct: 740 GFCVFEEMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSH 799

Query: 163 LG-SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMD-------LDAAIQIFREMECK 214
            G         + +T K G++        ++  Y+C++D       L  A  +   M  K
Sbjct: 800 AGLVDEGWAHFNSMTQKYGIM-------PLVYHYTCMVDLLGRAGYLSEAEALIENMPVK 852

Query: 215 -DVISWTRMMG 224
            D + W  ++G
Sbjct: 853 PDSVIWEALLG 863



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 91/205 (44%), Gaps = 45/205 (21%)

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
           Q+ L   N+ I    + G ++ +R VFN++ ++ +VSW ++I+GY QNG   EA      
Sbjct: 168 QTHLFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEAR----- 222

Query: 343 MRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
                                              + F+A   +       L++ Y+K G
Sbjct: 223 -----------------------------------LLFDAFVGKNIRTWTILLTGYAKEG 247

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
            ++ A  VFE M   R+VVSWN +I GY  NG  + A  L+ +M E     + +++ S++
Sbjct: 248 RIEEAREVFESMT-ERNVVSWNAMISGYVQNGDLKNARKLFDEMPEK----NVASWNSVV 302

Query: 463 NACGHAGLTNDGLVIFNQMIEENKV 487
               H    ++   +F+QM E N V
Sbjct: 303 TGYCHCYRMSEARELFDQMPERNSV 327


>gi|15225505|ref|NP_181492.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75099847|sp|O80647.1|PP195_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g39620
 gi|3355489|gb|AAC27851.1| hypothetical protein [Arabidopsis thaliana]
 gi|330254604|gb|AEC09698.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 836

 Score =  252 bits (644), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 160/562 (28%), Positives = 288/562 (51%), Gaps = 25/562 (4%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           SS L+  Y     +  AE++F+E+  K+  SW  ++  Y+ NGF E+ ++ F  M    +
Sbjct: 237 SSGLIDMYCNCADLYAAESVFEEVWRKDESSWGTMMAAYAHNGFFEEVLELFDLMRNYDV 296

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
             N       L AAA + +L    +IH   V+ GL  D                      
Sbjct: 297 RMNKVAAASALQAAAYVGDLVKGIAIHDYAVQQGLIGDVSVATSLMSMYSKCGELEIAEQ 356

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           LF  +++  +VS +A++A +       +A+ LF       + PNAVT+ +V++GC  + +
Sbjct: 357 LFINIEDRDVVSWSAMIASYEQAGQHDEAISLFRDMMRIHIKPNAVTLTSVLQGCAGVAA 416

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
             L + IH   IK  +  ++    +V+ MY+       A++ F  +  KD +++  +   
Sbjct: 417 SRLGKSIHCYAIKADIESELETATAVISMYAKCGRFSPALKAFERLPIKDAVAFNALAQG 476

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +     A  A  +++ M+   +  D+  ++ ++   A   D  RG  ++ Q++  G  SE
Sbjct: 477 YTQIGDANKAFDVYKNMKLHGVCPDSRTMVGMLQTCAFCSDYARGSCVYGQIIKHGFDSE 536

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
             +++++I M++KC  L ++  +F++   EKS VSW  +++GY+ +G A EA+  F +M+
Sbjct: 537 CHVAHALINMFTKCDALAAAIVLFDKCGFEKSTVSWNIMMNGYLLHGQAEEAVATFRQMK 596

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
            EK    +++T V+I+ A+ EL+AL + + +H    + GF     V N L+  Y+KCG +
Sbjct: 597 VEKFQP-NAVTFVNIVRAAAELSALRVGMSVHSSLIQCGFCSQTPVGNSLVDMYAKCGMI 655

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           + +   F E+   + +VSWNT++  Y  +G    A++L+  M E    PDS ++LS+L+A
Sbjct: 656 ESSEKCFIEISN-KYIVSWNTMLSAYAAHGLASCAVSLFLSMQENELKPDSVSFLSVLSA 714

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C HAGL  +G  IF +M E +K++   EHY C+VDLL +AG   +A  +  ++       
Sbjct: 715 CRHAGLVEEGKRIFEEMGERHKIEAEVEHYACMVDLLGKAGLFGEAVEMMRRMRVKTSVG 774

Query: 525 IWRALLSGCVLHVGRFQDAEAL 546
           +W ALL+   +H   +    AL
Sbjct: 775 VWGALLNSSRMHCNLWLSNAAL 796



 Score =  208 bits (530), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 158/571 (27%), Positives = 269/571 (47%), Gaps = 41/571 (7%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           + P+N  +L++ Y    +   +  +FD + +  VV W+ +I GY+  G H +++  F +M
Sbjct: 33  LKPHN--QLINAYSLFQRQDLSRVIFDSVRDPGVVLWNSMIRGYTRAGLHREALGFFGYM 90

Query: 63  MLS-GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------- 105
               G+ P+ ++    L A AG  + +    IH L+ + GLESD                
Sbjct: 91  SEEKGIDPDKYSFTFALKACAGSMDFKKGLRIHDLIAEMGLESDVYIGTALVEMYCKARD 150

Query: 106 ------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                 +F+ +    +V+ N +V+G   N     A+LLF+  R   +  + V++  +I  
Sbjct: 151 LVSARQVFDKMHVKDVVTWNTMVSGLAQNGCSSAALLLFHDMRSCCVDIDHVSLYNLIPA 210

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
              L    +C  +HGL IK G I   S  + ++DMY    DL AA  +F E+  KD  SW
Sbjct: 211 VSKLEKSDVCRCLHGLVIKKGFIFAFS--SGLIDMYCNCADLYAAESVFEEVWRKDESSW 268

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
             MM  +    +  + L++F  MR   +  + VA  + +   A +GDL +G  +H   V 
Sbjct: 269 GTMMAAYAHNGFFEEVLELFDLMRNYDVRMNKVAAASALQAAAYVGDLVKGIAIHDYAVQ 328

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            GL  ++ ++ S+++MYSKCG+L+ +  +F  I ++ +VSW+A+I+ Y Q G   EA++ 
Sbjct: 329 QGLIGDVSVATSLMSMYSKCGELEIAEQLFINIEDRDVVSWSAMIASYEQAGQHDEAISL 388

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           F  M +      +++TL S+L     +AA  +   +H  A +A           +IS Y+
Sbjct: 389 FRDMMRIHIKP-NAVTLTSVLQGCAGVAASRLGKSIHCYAIKADIESELETATAVISMYA 447

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           KCG    A   FE +  ++D V++N +  GY   G    A  +Y  M   G  PDS T +
Sbjct: 448 KCGRFSPALKAFERLP-IKDAVAFNALAQGYTQIGDANKAFDVYKNMKLHGVCPDSRTMV 506

Query: 460 SILNACGHAGLTNDGLVIFNQMIE-----ENKVKPSQEHYGCVVDLLARAGCLSDASGLA 514
            +L  C        G  ++ Q+I+     E  V  +  +     D LA A  L D  G  
Sbjct: 507 GMLQTCAFCSDYARGSCVYGQIIKHGFDSECHVAHALINMFTKCDALAAAIVLFDKCGFE 566

Query: 515 GKLLEGMGPNIWRALLSGCVLHVGRFQDAEA 545
              +       W  +++G +LH G+ ++A A
Sbjct: 567 KSTVS------WNIMMNGYLLH-GQAEEAVA 590



 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 127/503 (25%), Positives = 246/503 (48%), Gaps = 27/503 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + L+  Y K+  +  A  +FD++  K+VV+W+ ++ G + NG    ++  F  M 
Sbjct: 134 DVYIGTALVEMYCKARDLVSARQVFDKMHVKDVVTWNTMVSGLAQNGCSSAALLLFHDMR 193

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCN---- 119
              +  +  ++  ++ A + L+  ++ R +HGL++K G       GL + Y   CN    
Sbjct: 194 SCCVDIDHVSLYNLIPAVSKLEKSDVCRCLHGLVIKKGFIFAFSSGLIDMY---CNCADL 250

Query: 120 -------------------AIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                               ++A + +N  F++ + LF+  R   +  N V   + ++  
Sbjct: 251 YAAESVFEEVWRKDESSWGTMMAAYAHNGFFEEVLELFDLMRNYDVRMNKVAAASALQAA 310

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             +G       IH   ++ GLI DVSV  S++ MYS   +L+ A Q+F  +E +DV+SW+
Sbjct: 311 AYVGDLVKGIAIHDYAVQQGLIGDVSVATSLMSMYSKCGELEIAEQLFINIEDRDVVSWS 370

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+  +       +A+ +FR+M +  I  + V L +++   A +   + GK +H   +  
Sbjct: 371 AMIASYEQAGQHDEAISLFRDMMRIHIKPNAVTLTSVLQGCAGVAASRLGKSIHCYAIKA 430

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
            ++SEL  + ++I+MY+KCG    +   F ++  K  V++ A+  GY Q G A +A + +
Sbjct: 431 DIESELETATAVISMYAKCGRFSPALKAFERLPIKDAVAFNALAQGYTQIGDANKAFDVY 490

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
             M+       DS T+V +L      +       ++G   + GF     V + LI+ ++K
Sbjct: 491 KNMKLHGV-CPDSRTMVGMLQTCAFCSDYARGSCVYGQIIKHGFDSECHVAHALINMFTK 549

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           C  +  A ++F++ GF +  VSWN ++ GY ++G  E A+A + +M      P++ T+++
Sbjct: 550 CDALAAAIVLFDKCGFEKSTVSWNIMMNGYLLHGQAEEAVATFRQMKVEKFQPNAVTFVN 609

Query: 461 ILNACGHAGLTNDGLVIFNQMIE 483
           I+ A         G+ + + +I+
Sbjct: 610 IVRAAAELSALRVGMSVHSSLIQ 632



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 88/299 (29%), Positives = 148/299 (49%), Gaps = 12/299 (4%)

Query: 149 NAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIF 208
           N   +L ++R C     R L + +HG  I  GL      +N +++ YS     D +  IF
Sbjct: 4   NYTNLLLMLRECKNF--RCLLQ-VHGSLIVSGL----KPHNQLINAYSLFQRQDLSRVIF 56

Query: 209 REMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSR-IICDTVALLNLISVNAILGDL 267
             +    V+ W  M+  +       +AL  F  M + + I  D  +    +   A   D 
Sbjct: 57  DSVRDPGVVLWNSMIRGYTRAGLHREALGFFGYMSEEKGIDPDKYSFTFALKACAGSMDF 116

Query: 268 KRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGY 327
           K+G ++H  +   GL+S++ +  +++ MY K  DL S+R VF+++  K +V+W  ++SG 
Sbjct: 117 KKGLRIHDLIAEMGLESDVYIGTALVEMYCKARDLVSARQVFDKMHVKDVVTWNTMVSGL 176

Query: 328 VQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRY 387
            QNGC+  AL  F  MR    D +D ++L +++ A  +L   ++C  LHG+  + GF   
Sbjct: 177 AQNGCSSAALLLFHDMRSCCVD-IDHVSLYNLIPAVSKLEKSDVCRCLHGLVIKKGF--I 233

Query: 388 RSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM 446
            +  + LI  Y  C ++  A  VFEE+ + +D  SW T++  Y  NG  E  L L+  M
Sbjct: 234 FAFSSGLIDMYCNCADLYAAESVFEEV-WRKDESSWGTMMAAYAHNGFFEEVLELFDLM 291


>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  252 bits (644), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 165/550 (30%), Positives = 283/550 (51%), Gaps = 28/550 (5%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  + +++ Y K G + EA  LFD++PE+N++SW+ +I G+S NGF  ++ +AF  +
Sbjct: 243 MDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSL 302

Query: 63  MLSG--LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL-------------- 106
           + SG  L+P+  TMV +L   +G  N+++   IHG+ VK GL  +L              
Sbjct: 303 LESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCG 362

Query: 107 --------FEGLKNPYLVSCNAIVAGFINNK-LFQQAVLLFNFFRGSGLVP-NAVTMLTV 156
                   F  ++N  +VS N+++  +     +F+   LL   +    L+  N VT+L +
Sbjct: 363 CLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNL 422

Query: 157 IRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
           +  C+          +HG +++        +NN+ +  Y+    L  A  +F  M  K V
Sbjct: 423 LPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSV 482

Query: 217 ISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQ 276
            SW  ++G          AL  + EM +  I+ D  ++++L+     LG L+ GK++H  
Sbjct: 483 SSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGF 542

Query: 277 VVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
           V+  GL+    ++ S++++Y  C      R+ F  + +K+ V W A++SGY QN    EA
Sbjct: 543 VLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFETMGDKNSVCWNAMLSGYSQNELPNEA 602

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
           L+ F +M  +  +  D I + SIL A  +L+AL +  ++H  A +        V   L+ 
Sbjct: 603 LSLFRQMLSDGLEP-DEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMD 661

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
            Y+K G +  +  +F  +   ++V SWN +I G+GV+G G  A+ L+  M  + + PD  
Sbjct: 662 MYAKSGFLGHSQRIFNRLNG-KEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRF 720

Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK 516
           T+L +L AC HAGL ++GL    QM    K++P  EHY CV+D+L RAG L++A     +
Sbjct: 721 TFLGVLQACCHAGLVSEGLNYLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFINE 780

Query: 517 LLEGMGPNIW 526
           + E     IW
Sbjct: 781 MPEEPDAKIW 790



 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 157/561 (27%), Positives = 273/561 (48%), Gaps = 41/561 (7%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM-LSG 66
           +++L++ Y   G   E+  +FD +  KN+  W+ ++ GY  N  +++++  F  ++ ++ 
Sbjct: 146 NTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTE 205

Query: 67  LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG----------------- 109
             P++FT   ++ A  G  ++ L +S+HG+ VK GL  DLF G                 
Sbjct: 206 FQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAV 265

Query: 110 -----LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFF--RGSGLVPNAVTMLTVIRGCVA 162
                +    L+S N+++ GF  N  + +A   F      G GL+P+  TM+T++  C  
Sbjct: 266 ELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSG 325

Query: 163 LGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
            G+  +  +IHG+ +KLGL+ ++ V N+++DMYS    L  A  +FR++E K V+SW  M
Sbjct: 326 EGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSM 385

Query: 223 MGLFVDFEYAGDALKIFRE--MRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
           +G +    +  +   + R+  M +  +  + V +LNL+       +L   + LH   +  
Sbjct: 386 IGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRH 445

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
             Q +  ++N+ IA Y+KCG L  +  VF  +  KS+ SW A+I G+ QNG   +AL+ +
Sbjct: 446 SFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFY 505

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            +M +      D  ++VS+L A G L  L+   ++HG     G      V   L+S Y  
Sbjct: 506 FEMTRLGILP-DDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFH 564

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           C         FE MG  ++ V WN ++ GY  N     AL+L+ +M   G  PD     S
Sbjct: 565 CSKPFYGRTYFETMGD-KNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIAS 623

Query: 461 ILNACGHAGLTNDG-----LVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAG 515
           IL AC        G       + N ++E+N V  S      ++D+ A++G L  +  +  
Sbjct: 624 ILGACSQLSALGLGKEVHCFALKNSLMEDNFVACS------LMDMYAKSGFLGHSQRIFN 677

Query: 516 KLLEGMGPNIWRALLSGCVLH 536
           + L G     W  +++G  +H
Sbjct: 678 R-LNGKEVASWNVMITGFGVH 697



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 147/282 (52%), Gaps = 9/282 (3%)

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
           L+  +I MYS CG    SR VF+++  K+L  W A++SGYV+N    EA++ F+++    
Sbjct: 145 LNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVT 204

Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
               D+ T   ++ A      + +   +HG+A + G      V N +I+ Y KCG +D A
Sbjct: 205 EFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEA 264

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE--VPDSSTYLSILNAC 465
             +F++M   ++++SWN++I G+  NG    A   +  + E+G+  +PD +T +++L  C
Sbjct: 265 VELFDKMP-EQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVC 323

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGC--VVDLLARAGCLSDASGLAGKLLEGMGP 523
              G  + G+VI    +   K+    E   C  ++D+ ++ GCLS+A+ L  K +E    
Sbjct: 324 SGEGNVDVGMVIHGMAV---KLGLVHELMVCNALIDMYSKCGCLSEAAILFRK-IENKSV 379

Query: 524 NIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFLN 565
             W +++         F+  + LR    ++ ++++  ++ LN
Sbjct: 380 VSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILN 421



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 84/287 (29%), Positives = 145/287 (50%), Gaps = 7/287 (2%)

Query: 184 DVSVNNSVLDMYS-CLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREM 242
           D  +N  ++ MYS C   L++ + +F  +  K++  W  ++  +V  E   +A+  F E+
Sbjct: 142 DFVLNTRLITMYSICGYPLESRL-VFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLEL 200

Query: 243 -RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGD 301
              +    D      LI       D+  GK +H   V  GL  +L + N++IA+Y KCG 
Sbjct: 201 ISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGF 260

Query: 302 LDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV-DSITLVSIL 360
           LD +  +F+++ E++L+SW ++I G+ +NG   EA   F  + +     + D  T+V++L
Sbjct: 261 LDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLL 320

Query: 361 TASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDV 420
                   +++ + +HG+A + G      V N LI  YSKCG +  A I+F ++   + V
Sbjct: 321 PVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIEN-KSV 379

Query: 421 VSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS--TYLSILNAC 465
           VSWN++I  Y   G       L  KM    E+ + +  T L++L AC
Sbjct: 380 VSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPAC 426


>gi|302773325|ref|XP_002970080.1| hypothetical protein SELMODRAFT_171135 [Selaginella moellendorffii]
 gi|300162591|gb|EFJ29204.1| hypothetical protein SELMODRAFT_171135 [Selaginella moellendorffii]
          Length = 829

 Score =  252 bits (644), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 152/562 (27%), Positives = 278/562 (49%), Gaps = 33/562 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D   ++ +L+ Y + G +  A   FD +  +NVVSWS +I  Y+  G    +++ F  M 
Sbjct: 76  DVVVATAVLTMYNRCGSVSHARRAFDAMVVRNVVSWSAMIAAYAQRGHPGDALELFVRMD 135

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
             G+  N+ T V VL A A ++ + L +SIH  +V  GL  D                  
Sbjct: 136 HEGVKANAITFVSVLDACASMRAIALGKSIHERIVADGLLGDDVILGNTIVNMYGKCGEV 195

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +FE ++    V+ N ++A    +  +++A  L       GL PN +T+++VI  C
Sbjct: 196 DLAREVFERMEAKNAVTWNTMIAACSRHDRYKEAFALLGEMDLDGLRPNKITLVSVIDAC 255

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             + S     ++H +    GL  D +V N+++++Y     L AA      +E +D ISWT
Sbjct: 256 AWMQSIVRGRIVHEIVAGEGLESDNTVANALVNLYGKCGKLRAARHALEGIETRDKISWT 315

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++  +    +   A+ + + M    +  D+   +NL+     +  L  G+++H ++   
Sbjct: 316 TLLAAYARHGHGKRAIAVIKRMDHEGVKLDSFTFVNLLESCVAIAALALGEEIHDRLAES 375

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE-KSLVSWTAIISGYVQNGCAREALNQ 339
           G++ +  L  +++ MY KCG+ D++R  F+++++ + +  W A+++ YV     +E L  
Sbjct: 376 GIELDPVLQTALVDMYGKCGNPDAARRAFDRMSDVRDVTVWNALLAAYVLRDQGKETLGI 435

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC------ 393
           F +M  +   + D++T +SIL A   LAAL +    H    E G    ++V +       
Sbjct: 436 FARMSLQGV-APDAVTFLSILDACASLAALGLGRLTHSRMLERGLFDRQAVASADLLTTS 494

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLR--DVVSWNTIIYGYGVNGHGETALALYHKMTETGE 451
           +I+ Y+KCG++  A   F +    R  DVV+W+ ++  Y   G  E AL  ++ M + G 
Sbjct: 495 VINMYAKCGSLADAKAEFAKARRARASDVVAWSAMVAAYSQFGLSEEALRCFYSMQQEGV 554

Query: 452 VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDAS 511
            PDS +++S +  C H+GL  + +  F  +  ++ + P++ H+ C+VDLL+RAG + +A 
Sbjct: 555 KPDSVSFVSAIAGCSHSGLVREAVAFFTSLRHDHGIAPTEAHFACLVDLLSRAGWIREAE 614

Query: 512 GLAGKLLEGMGPNIWRALLSGC 533
            L  +   G   + W  LLS C
Sbjct: 615 ALMRRAPLGAHHSTWMTLLSAC 636



 Score =  218 bits (556), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 148/572 (25%), Positives = 281/572 (49%), Gaps = 40/572 (6%)

Query: 31  IPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELA 90
           + +++  SW++ I  Y+ NG H ++++ F  M L G+ P+  + + +L A A L +L   
Sbjct: 1   MADRSPFSWNLAIAEYARNGHHARALEIFRAMALEGVAPDRVSCIAILDAFASLGDLSQG 60

Query: 91  RSIHGLMVKF-GLESDL----------------------FEGLKNPYLVSCNAIVAGFIN 127
              H  + +  GL SD+                      F+ +    +VS +A++A +  
Sbjct: 61  EFFHRTVCEASGLGSDVVVATAVLTMYNRCGSVSHARRAFDAMVVRNVVSWSAMIAAYAQ 120

Query: 128 NKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLI-LDVS 186
                 A+ LF      G+  NA+T ++V+  C ++ + AL + IH   +  GL+  DV 
Sbjct: 121 RGHPGDALELFVRMDHEGVKANAITFVSVLDACASMRAIALGKSIHERIVADGLLGDDVI 180

Query: 187 VNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSR 246
           + N++++MY    ++D A ++F  ME K+ ++W  M+      +   +A  +  EM    
Sbjct: 181 LGNTIVNMYGKCGEVDLAREVFERMEAKNAVTWNTMIAACSRHDRYKEAFALLGEMDLDG 240

Query: 247 IICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSR 306
           +  + + L+++I   A +  + RG+ +H  V   GL+S+  ++N+++ +Y KCG L ++R
Sbjct: 241 LRPNKITLVSVIDACAWMQSIVRGRIVHEIVAGEGLESDNTVANALVNLYGKCGKLRAAR 300

Query: 307 SVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGEL 366
                I  +  +SWT +++ Y ++G  + A+    +M  E    +DS T V++L +   +
Sbjct: 301 HALEGIETRDKISWTTLLAAYARHGHGKRAIAVIKRMDHEGV-KLDSFTFVNLLESCVAI 359

Query: 367 AALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTI 426
           AAL +  ++H    E+G      +Q  L+  Y KCGN D A   F+ M  +RDV  WN +
Sbjct: 360 AALALGEEIHDRLAESGIELDPVLQTALVDMYGKCGNPDAARRAFDRMSDVRDVTVWNAL 419

Query: 427 IYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIE--- 483
           +  Y +   G+  L ++ +M+  G  PD+ T+LSIL+AC        G +  ++M+E   
Sbjct: 420 LAAYVLRDQGKETLGIFARMSLQGVAPDAVTFLSILDACASLAALGLGRLTHSRMLERGL 479

Query: 484 --ENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI--WRALLSGCVLHVGR 539
                V  +      V+++ A+ G L+DA     K       ++  W A+++       +
Sbjct: 480 FDRQAVASADLLTTSVINMYAKCGSLADAKAEFAKARRARASDVVAWSAMVAA----YSQ 535

Query: 540 FQ-DAEALRS--GSQKKGIIKIPGISFLNSTS 568
           F    EALR     Q++G +K   +SF+++ +
Sbjct: 536 FGLSEEALRCFYSMQQEG-VKPDSVSFVSAIA 566


>gi|302782183|ref|XP_002972865.1| hypothetical protein SELMODRAFT_51647 [Selaginella moellendorffii]
 gi|300159466|gb|EFJ26086.1| hypothetical protein SELMODRAFT_51647 [Selaginella moellendorffii]
          Length = 597

 Score =  252 bits (644), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 162/574 (28%), Positives = 276/574 (48%), Gaps = 38/574 (6%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y S+ ++  Y K G + +A  +F  I  +NV SW+++I  ++ NG  E+S+  F  M+  
Sbjct: 15  YVSNMIVQMYGKCGSVDDAWIVFSSIQARNVFSWNMIIAAFAQNGHPERSVALFWRMIRE 74

Query: 66  --GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
             G++P   T +  L     L+NL   R IH L +  GLESD                  
Sbjct: 75  EPGIIPTRITFLHAL---EKLKNLAEGRKIHELAITVGLESDPAVGTAIVTMYGKSRSLA 131

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +F+ LK   +V+  A++  +  N   ++A+ L++     G+ PN  T   VI  C 
Sbjct: 132 DAKRVFDQLKRRDVVAWTALITAYTQNGHCEEALDLYSSMDPDGVAPNQYTFTIVIDACA 191

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            LG   +   IH      GL   + V NS++++Y     L  A +IF+ M  +  +SW  
Sbjct: 192 ELGRLDVGIAIHARITAAGLESWIEVANSLINLYGNCKRLRDAERIFQRMPRRSSVSWNS 251

Query: 222 MMGLFVDFEYAGDALKIFREMR-KSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
           M+  +    + GDA+ +++ MR    +  D V  +N++       DL  G+ +H   +  
Sbjct: 252 MIAAYAHNGHPGDAIDLYKRMRGDGSVKLDPVTFVNVLGACYSQEDLAAGRSIHRDAIAR 311

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           GL S L L+++ ++MY +CG ++ S + F ++  K  V+W+A+I+   QNG +  AL+ +
Sbjct: 312 GLGSHLVLASAAVSMYGRCGSVEESMATFERMEIKDGVAWSAVIAALAQNGESSSALHFY 371

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            +M    +   +  T +S+L A    +  +  +++H    ++G      +   + + Y+K
Sbjct: 372 RRMIWSSSARPNEATFISVLEA---CSFADEGIKIHQHIVDSGIVHSTMISTAIFNMYAK 428

Query: 401 CGNVDLAYIVFEEMGFLR------DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           CG +D A  +F  M   R      + VSW  +I     +G  + AL L+ +M   G  P 
Sbjct: 429 CGRLDRAREIFSSMRASRGSFQSANDVSWMNMISALARHGSIDEALELFREMRLEGGKPS 488

Query: 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLA 514
              ++SIL+ C H+G    GL  F  MI+++ + P  EHYGC++DLL R G L  A  L 
Sbjct: 489 EIVFISILHGCSHSGTMEQGLGHFLAMIQDHGLAPRVEHYGCLIDLLGRGGHLDLAQDLV 548

Query: 515 GKLLEGMGPNIWRALLSGCVLHVGRFQ-DAEALR 547
            ++        W   L  C LH  R + +A A+R
Sbjct: 549 DQMPFEPDARAWSNFLGSCRLHSDRDRAEAAAIR 582



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 123/464 (26%), Positives = 212/464 (45%), Gaps = 52/464 (11%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           DP   + +++ Y KS  + +A+ +FD++  ++VV+W+ +I  Y+ NG  E+++  +S M 
Sbjct: 113 DPAVGTAIVTMYGKSRSLADAKRVFDQLKRRDVVAWTALITAYTQNGHCEEALDLYSSMD 172

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES------------------- 104
             G+ PN +T   V+ A A L  L++  +IH  +   GLES                   
Sbjct: 173 PDGVAPNQYTFTIVIDACAELGRLDVGIAIHARITAAGLESWIEVANSLINLYGNCKRLR 232

Query: 105 ---DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVP-NAVTMLTVIRGC 160
               +F+ +     VS N+++A + +N     A+ L+   RG G V  + VT + V+  C
Sbjct: 233 DAERIFQRMPRRSSVSWNSMIAAYAHNGHPGDAIDLYKRMRGDGSVKLDPVTFVNVLGAC 292

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
            +    A    IH   I  GL   + + ++ + MY     ++ ++  F  ME KD ++W+
Sbjct: 293 YSQEDLAAGRSIHRDAIARGLGSHLVLASAAVSMYGRCGSVEESMATFERMEIKDGVAWS 352

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLN---LISVNAILGDLKRGKQLHAQV 277
            ++        +  AL  +R     R+I  + A  N    ISV         G ++H  +
Sbjct: 353 AVIAALAQNGESSSALHFYR-----RMIWSSSARPNEATFISVLEACSFADEGIKIHQHI 407

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQI-------TEKSLVSWTAIISGYVQN 330
           V  G+     +S +I  MY+KCG LD +R +F+ +          + VSW  +IS   ++
Sbjct: 408 VDSGIVHSTMISTAIFNMYAKCGRLDRAREIFSSMRASRGSFQSANDVSWMNMISALARH 467

Query: 331 GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALE-------ICLQLHGIAFEAG 383
           G   EAL  F +MR E     + I  +SIL        +E         +Q HG+A    
Sbjct: 468 GSIDEALELFREMRLEGGKPSE-IVFISILHGCSHSGTMEQGLGHFLAMIQDHGLA---- 522

Query: 384 FPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
            PR      CLI    + G++DLA  + ++M F  D  +W+  +
Sbjct: 523 -PRVEHY-GCLIDLLGRGGHLDLAQDLVDQMPFEPDARAWSNFL 564



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 141/293 (48%), Gaps = 6/293 (2%)

Query: 273 LHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC 332
           LH  +   G  S   +SN I+ MY KCG +D +  VF+ I  +++ SW  II+ + QNG 
Sbjct: 1   LHCWIRERGHGSSTYVSNMIVQMYGKCGSVDDAWIVFSSIQARNVFSWNMIIAAFAQNGH 60

Query: 333 AREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN 392
              ++  F +M +E+   +   T ++ L A  +L  L    ++H +A   G     +V  
Sbjct: 61  PERSVALFWRMIREEPGIIP--TRITFLHALEKLKNLAEGRKIHELAITVGLESDPAVGT 118

Query: 393 CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV 452
            +++ Y K  ++  A  VF+++   RDVV+W  +I  Y  NGH E AL LY  M   G  
Sbjct: 119 AIVTMYGKSRSLADAKRVFDQLK-RRDVVAWTALITAYTQNGHCEEALDLYSSMDPDGVA 177

Query: 453 PDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASG 512
           P+  T+  +++AC   G  + G+ I  + I    ++   E    +++L      L DA  
Sbjct: 178 PNQYTFTIVIDACAELGRLDVGIAIHAR-ITAAGLESWIEVANSLINLYGNCKRLRDAER 236

Query: 513 LAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFLN 565
           +  ++      + W ++++    H G   DA  L    +  G +K+  ++F+N
Sbjct: 237 IFQRMPRRSSVS-WNSMIAAYA-HNGHPGDAIDLYKRMRGDGSVKLDPVTFVN 287


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  252 bits (644), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 168/602 (27%), Positives = 286/602 (47%), Gaps = 99/602 (16%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  D ++ + +L+ Y ++ ++++A  LFD +PEK+VVSW+ ++ GY  +G  +++   F 
Sbjct: 91  PHKDLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFD 150

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNA 120
            M       NS +  G+L A      LE AR              LFE   +  L+SCN 
Sbjct: 151 RMPHK----NSISWNGLLAAYVRSGRLEEARR-------------LFESKSDWELISCNC 193

Query: 121 IVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLG 180
           ++ G++   +   A  LF+       +P                                
Sbjct: 194 LMGGYVKRNMLGDARQLFD------QIP-------------------------------- 215

Query: 181 LILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFR 240
            + D+   N+++  Y+   DL  A ++F E   +DV +WT M+  +V      +A ++F 
Sbjct: 216 -VRDLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRVFD 274

Query: 241 EMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCG 300
           EM + R +   V    +I+  A    +  G++L  ++    + S     N +I+ Y + G
Sbjct: 275 EMPQKREMSYNV----MIAGYAQYKRMDMGRELFEEMPFPNIGS----WNIMISGYCQNG 326

Query: 301 DLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSIL 360
           DL  +R++F+ + ++  VSW AII+GY QNG   EA+N  ++M+++  +S++  T    L
Sbjct: 327 DLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRD-GESLNRSTFCCAL 385

Query: 361 TASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDV 420
           +A  ++AALE+  Q+HG     G+ +   V N L+  Y KCG +D AY VF+ +   +D+
Sbjct: 386 SACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQH-KDI 444

Query: 421 VSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQ 480
           VSWNT++ GY  +G G  AL ++  M   G  PD  T + +L+AC H GLT+ G   F+ 
Sbjct: 445 VSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHS 504

Query: 481 MIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH---- 536
           M ++  + P+ +HY C++DLL RAGCL +A  L   +        W ALL    +H    
Sbjct: 505 MNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIHGNME 564

Query: 537 -----------------------------VGRFQDAEALRSGSQKKGIIKIPGISFLNST 567
                                         GR+ D   +R   ++ G+ K PG S++   
Sbjct: 565 LGEQAAEMVFKMEPHNSGMYVLLSNLYAASGRWVDVSKMRLKMRQIGVQKTPGYSWVEVQ 624

Query: 568 SR 569
           ++
Sbjct: 625 NK 626


>gi|357437223|ref|XP_003588887.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477935|gb|AES59138.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 697

 Score =  252 bits (643), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 170/561 (30%), Positives = 282/561 (50%), Gaps = 33/561 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSW-SIVIHGYSINGFHEKSMKAFSHM 62
           D Y    L+S Y        A+N+FD I     +S  + ++ GY+ N  +++++  F  +
Sbjct: 37  DVYVCKNLISLYVSCNLFDYAKNVFDVIENPFEISLCNGLMAGYTRNCMYDEALGLFDKL 96

Query: 63  MLSGLL-PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------- 105
           M    L P+S+T   VL A  GL+ + L + IH  +VK GL  D                
Sbjct: 97  MCYPCLKPDSYTYPSVLKACGGLRRVVLGQMIHTCLVKEGLMVDIVVGSSLVGMYAKCNE 156

Query: 106 ------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                 LF+ + +  +   N +++ +  +  F++A+  F   R  G  P++VT+ T I  
Sbjct: 157 FECAVKLFDEMPDKDVACWNTVISCYYQSGKFEEALRYFGMMRRFGFEPDSVTITTAISS 216

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C  L        IH   +  G  +D  V+ +++DMY     L+ AI++F +M  K V++W
Sbjct: 217 CARLLDLDRGREIHKELVNSGFRMDSFVSAALVDMYGKCGQLEMAIEVFEQMPNKTVVAW 276

Query: 220 TRMMGLFVDFEYAGDAL---KIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQ 276
             M+     + + GD +   ++F+ M    +      L + +   +    L  GK +H  
Sbjct: 277 NSMIN---GYGFKGDGISCIQLFKRMYSEGVKPTLTTLTSTLMACSQSAQLLEGKFVHGY 333

Query: 277 VVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
           ++   +Q ++ L++S++ +Y KCG ++S+ ++F  + + + VSW  +ISGYV  G   +A
Sbjct: 334 IIRNRIQPDIFLNSSLMDLYFKCGKVESAETIFKLMPKTTTVSWNVMISGYVTEGKLFDA 393

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
           L  F +M +   +  D+IT  S+L A  +LAALE   ++H +  E        V   L+ 
Sbjct: 394 LRLFGEMSKSFVEP-DAITFTSVLAACSQLAALEKGREIHNLIVERNLGNNEVVMGALLD 452

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
            Y+KCG V+ A+ VF+ +   RD+VSW ++I  YG +G    AL L+ +M ++   PD  
Sbjct: 453 MYAKCGAVEEAFGVFKCLP-ERDLVSWTSMITAYGSHGRVYEALELFAEMLQSNVKPDRV 511

Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK 516
           T+L+IL+AC HAGL +DGL  FNQMI    + P  EHY C++ LL RAG L +A  +   
Sbjct: 512 TFLAILSACSHAGLVDDGLYHFNQMINVYGIIPRIEHYSCLITLLGRAGRLHEAYEILQS 571

Query: 517 LLEGMGP-NIWRALLSGCVLH 536
             E      +   L S C LH
Sbjct: 572 NPEISDDFQLLSTLFSACRLH 592



 Score =  187 bits (476), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 129/447 (28%), Positives = 231/447 (51%), Gaps = 9/447 (2%)

Query: 79  VAAAGLQN-LELARSIHGLMVK---FGLESDLFEGLKNPYLVS-CNAIVAGFINNKLFQQ 133
           V   GLQN + + +++  L V    F    ++F+ ++NP+ +S CN ++AG+  N ++ +
Sbjct: 29  VVTLGLQNDVYVCKNLISLYVSCNLFDYAKNVFDVIENPFEISLCNGLMAGYTRNCMYDE 88

Query: 134 AVLLFN-FFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVL 192
           A+ LF+       L P++ T  +V++ C  L    L ++IH   +K GL++D+ V +S++
Sbjct: 89  ALGLFDKLMCYPCLKPDSYTYPSVLKACGGLRRVVLGQMIHTCLVKEGLMVDIVVGSSLV 148

Query: 193 DMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTV 252
            MY+   + + A+++F EM  KDV  W  ++  +       +AL+ F  MR+     D+V
Sbjct: 149 GMYAKCNEFECAVKLFDEMPDKDVACWNTVISCYYQSGKFEEALRYFGMMRRFGFEPDSV 208

Query: 253 ALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQI 312
            +   IS  A L DL RG+++H ++V  G + +  +S +++ MY KCG L+ +  VF Q+
Sbjct: 209 TITTAISSCARLLDLDRGREIHKELVNSGFRMDSFVSAALVDMYGKCGQLEMAIEVFEQM 268

Query: 313 TEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEIC 372
             K++V+W ++I+GY   G     +  F +M  E      +    +++  S     LE  
Sbjct: 269 PNKTVVAWNSMINGYGFKGDGISCIQLFKRMYSEGVKPTLTTLTSTLMACSQSAQLLEGK 328

Query: 373 LQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGV 432
             +HG            + + L+  Y KCG V+ A  +F+ M      VSWN +I GY  
Sbjct: 329 F-VHGYIIRNRIQPDIFLNSSLMDLYFKCGKVESAETIFKLMP-KTTTVSWNVMISGYVT 386

Query: 433 NGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQE 492
            G    AL L+ +M+++   PD+ T+ S+L AC        G  I N ++E N +  ++ 
Sbjct: 387 EGKLFDALRLFGEMSKSFVEPDAITFTSVLAACSQLAALEKGREIHNLIVERN-LGNNEV 445

Query: 493 HYGCVVDLLARAGCLSDASGLAGKLLE 519
             G ++D+ A+ G + +A G+   L E
Sbjct: 446 VMGALLDMYAKCGAVEEAFGVFKCLPE 472



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 115/439 (26%), Positives = 209/439 (47%), Gaps = 36/439 (8%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D    S L+  Y K  + + A  LFDE+P+K+V  W+ VI  Y  +G  E++++ F  M
Sbjct: 139 VDIVVGSSLVGMYAKCNEFECAVKLFDEMPDKDVACWNTVISCYYQSGKFEEALRYFGMM 198

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
              G  P+S T+   + + A L +L+  R IH  +V  G   D                 
Sbjct: 199 RRFGFEPDSVTITTAISSCARLLDLDRGREIHKELVNSGFRMDSFVSAALVDMYGKCGQL 258

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +FE + N  +V+ N+++ G+         + LF      G+ P   T+ + +  C
Sbjct: 259 EMAIEVFEQMPNKTVVAWNSMINGYGFKGDGISCIQLFKRMYSEGVKPTLTTLTSTLMAC 318

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
                    + +HG  I+  +  D+ +N+S++D+Y     +++A  IF+ M     +SW 
Sbjct: 319 SQSAQLLEGKFVHGYIIRNRIQPDIFLNSSLMDLYFKCGKVESAETIFKLMPKTTTVSWN 378

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+  +V      DAL++F EM KS +  D +   ++++  + L  L++G+++H  +V  
Sbjct: 379 VMISGYVTEGKLFDALRLFGEMSKSFVEPDAITFTSVLAACSQLAALEKGREIHNLIVER 438

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
            L +   +  +++ MY+KCG ++ +  VF  + E+ LVSWT++I+ Y  +G   EAL  F
Sbjct: 439 NLGNNEVVMGALLDMYAKCGAVEEAFGVFKCLPERDLVSWTSMITAYGSHGRVYEALELF 498

Query: 341 IKMRQEKTDSVDSITLVSILTASGE-------LAALEICLQLHGIAFEAGFPRYRSVQNC 393
            +M Q      D +T ++IL+A          L      + ++GI      PR     +C
Sbjct: 499 AEMLQSNVKP-DRVTFLAILSACSHAGLVDDGLYHFNQMINVYGI-----IPRIEHY-SC 551

Query: 394 LISSYSKCGNVDLAYIVFE 412
           LI+   + G +  AY + +
Sbjct: 552 LITLLGRAGRLHEAYEILQ 570



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 111/422 (26%), Positives = 204/422 (48%), Gaps = 18/422 (4%)

Query: 149 NAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIF 208
           +A  ++ ++R  V   S    +++H   + LGL  DV V  +++ +Y      D A  +F
Sbjct: 2   DARKLIPLLRASVNSKSLKQGKVLHQKVVTLGLQNDVYVCKNLISLYVSCNLFDYAKNVF 61

Query: 209 REMECKDVISWTR-MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAIL--- 264
             +E    IS    +M  +       +AL +F      +++C      +  +  ++L   
Sbjct: 62  DVIENPFEISLCNGLMAGYTRNCMYDEALGLF-----DKLMCYPCLKPDSYTYPSVLKAC 116

Query: 265 GDLKR---GKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWT 321
           G L+R   G+ +H  +V  GL  ++ + +S++ MY+KC + + +  +F+++ +K +  W 
Sbjct: 117 GGLRRVVLGQMIHTCLVKEGLMVDIVVGSSLVGMYAKCNEFECAVKLFDEMPDKDVACWN 176

Query: 322 AIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFE 381
            +IS Y Q+G   EAL  F  MR+   +  DS+T+ + +++   L  L+   ++H     
Sbjct: 177 TVISCYYQSGKFEEALRYFGMMRRFGFEP-DSVTITTAISSCARLLDLDRGREIHKELVN 235

Query: 382 AGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALA 441
           +GF     V   L+  Y KCG +++A  VFE+M   + VV+WN++I GYG  G G + + 
Sbjct: 236 SGFRMDSFVSAALVDMYGKCGQLEMAIEVFEQMPN-KTVVAWNSMINGYGFKGDGISCIQ 294

Query: 442 LYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLL 501
           L+ +M   G  P  +T  S L AC  +    +G  +   +I  N+++P       ++DL 
Sbjct: 295 LFKRMYSEGVKPTLTTLTSTLMACSQSAQLLEGKFVHGYII-RNRIQPDIFLNSSLMDLY 353

Query: 502 ARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGI 561
            + G +  A  +  KL+       W  ++SG V   G+  DA  L  G   K  ++   I
Sbjct: 354 FKCGKVESAETIF-KLMPKTTTVSWNVMISGYVTE-GKLFDALRL-FGEMSKSFVEPDAI 410

Query: 562 SF 563
           +F
Sbjct: 411 TF 412



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 89/206 (43%), Gaps = 22/206 (10%)

Query: 351 VDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIV 410
           +D+  L+ +L AS    +L+    LH      G      V   LIS Y  C   D A  V
Sbjct: 1   MDARKLIPLLRASVNSKSLKQGKVLHQKVVTLGLQNDVYVCKNLISLYVSCNLFDYAKNV 60

Query: 411 FEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHK-MTETGEVPDSSTYLSILNACGHAG 469
           F+ +    ++   N ++ GY  N   + AL L+ K M      PDS TY S+L ACG  G
Sbjct: 61  FDVIENPFEISLCNGLMAGYTRNCMYDEALGLFDKLMCYPCLKPDSYTYPSVLKACG--G 118

Query: 470 LTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLS-----DASGLAGKLLEGMGPN 524
           L     V+  QMI    VK      G +VD++  +  +      +    A KL + M   
Sbjct: 119 LRR---VVLGQMIHTCLVKE-----GLMVDIVVGSSLVGMYAKCNEFECAVKLFDEMPDK 170

Query: 525 ---IWRALLSGCVLHVGRFQDAEALR 547
               W  ++S C    G+F+  EALR
Sbjct: 171 DVACWNTVIS-CYYQSGKFE--EALR 193


>gi|413944451|gb|AFW77100.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 678

 Score =  251 bits (642), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 157/561 (27%), Positives = 282/561 (50%), Gaps = 39/561 (6%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML---- 64
           + LL  Y +     +A  LFDE+P +N+VSWS+VI G + +G   ++   FSHM+     
Sbjct: 45  NNLLYAYLRRQVPADARRLFDEMPRRNLVSWSVVISGSAHHGVLAEAFALFSHMLHGAGH 104

Query: 65  -SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
            S   P+SFT+  ++   +  ++++    +H  + KFG++ D                  
Sbjct: 105 GSWDRPDSFTLGALVAGCSRARDVDAGMQVHACVAKFGVDEDDSVAAALVDMYAKCGWVD 164

Query: 106 ----LFEGLKNPYLVSCNAIVAGFIN---NKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                F       ++S  +++A  +N   +  +  ++LLF       + P   T   +++
Sbjct: 165 SSWRAFTLAPQRSVLSWTSMIACLVNQGSSGYYDTSLLLFKKMLALKVWPTNATYSCILK 224

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK---D 215
                   ++   +HG  +K+G  +D ++  +++ MY     +D   +I R + C+   D
Sbjct: 225 VFDTPDLLSVGMQLHGCLLKMGTEVDTALGTALMTMYGRCGGVD---EIPR-LACRIRHD 280

Query: 216 VISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
            +S T ++G +    Y  +A+ +F+EM    +  D  A+  ++ V +  G L+  +Q+H 
Sbjct: 281 ALSRTALLGAYARTGYNAEAIGVFKEMIMKNMAIDQSAMTGMLQVCSSFGQLRMVRQVHC 340

Query: 276 QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
             +    + +  L N+ I +Y +CGD++S+ +VF  + E  ++SWTA+++ Y QNG   E
Sbjct: 341 YALKTFFKLDTLLLNATITVYGRCGDINSAETVFYLMEENDIISWTALLTCYTQNGLDEE 400

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLI 395
            L  F KM ++   S     + S+L AS  ++ L + LQ+H    + G     SVQN L+
Sbjct: 401 VLLFFRKMLRKGLGS-PVFCITSVLRASSSISNLAVGLQIHSRTLKLGIDDDNSVQNALV 459

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
           + Y+ CG+V +A  +F  M   RD+V+WN ++  +  +G    A+ L+  M E G  PD+
Sbjct: 460 TLYANCGSVQVALKIFNSMSN-RDIVTWNALLTSFSQHGSEVAAIQLFDLMQEEGICPDA 518

Query: 456 STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAG 515
            T++ +L++C   GL  +G   FN+M E+  ++P   HY C+VDLLARAG   DA     
Sbjct: 519 YTFVGLLSSCSRMGLVKEGCEYFNEMKEKYNLEPKMVHYTCMVDLLARAGRFCDAMDFID 578

Query: 516 KLLEGMGPNIWRALLSGCVLH 536
            +       +W ALL+ C +H
Sbjct: 579 AMPYEPDQILWEALLASCKVH 599



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 89/457 (19%), Positives = 202/457 (44%), Gaps = 26/457 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIH---GYSINGFHEKSMKAFS 60
           D   ++ L+  Y K G +  +   F   P+++V+SW+ +I        +G+++ S+  F 
Sbjct: 146 DDSVAAALVDMYAKCGWVDSSWRAFTLAPQRSVLSWTSMIACLVNQGSSGYYDTSLLLFK 205

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGL---------- 110
            M+   + P + T   +L        L +   +HG ++K G E D   G           
Sbjct: 206 KMLALKVWPTNATYSCILKVFDTPDLLSVGMQLHGCLLKMGTEVDTALGTALMTMYGRCG 265

Query: 111 ---KNPYL--------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
              + P L        +S  A++  +       +A+ +F       +  +   M  +++ 
Sbjct: 266 GVDEIPRLACRIRHDALSRTALLGAYARTGYNAEAIGVFKEMIMKNMAIDQSAMTGMLQV 325

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C + G   +   +H   +K    LD  + N+ + +Y    D+++A  +F  ME  D+ISW
Sbjct: 326 CSSFGQLRMVRQVHCYALKTFFKLDTLLLNATITVYGRCGDINSAETVFYLMEENDIISW 385

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           T ++  +       + L  FR+M +  +      + +++  ++ + +L  G Q+H++ + 
Sbjct: 386 TALLTCYTQNGLDEEVLLFFRKMLRKGLGSPVFCITSVLRASSSISNLAVGLQIHSRTLK 445

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G+  +  + N+++ +Y+ CG +  +  +FN ++ + +V+W A+++ + Q+G    A+ Q
Sbjct: 446 LGIDDDNSVQNALVTLYANCGSVQVALKIFNSMSNRDIVTWNALLTSFSQHGSEVAAI-Q 504

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAAL-EICLQLHGIAFEAGFPRYRSVQNCLISSY 398
              + QE+    D+ T V +L++   +  + E C   + +  +           C++   
Sbjct: 505 LFDLMQEEGICPDAYTFVGLLSSCSRMGLVKEGCEYFNEMKEKYNLEPKMVHYTCMVDLL 564

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGH 435
           ++ G    A    + M +  D + W  ++    V+G+
Sbjct: 565 ARAGRFCDAMDFIDAMPYEPDQILWEALLASCKVHGN 601



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 138/306 (45%), Gaps = 11/306 (3%)

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           +HG+ IKLG I+   + N++L  Y        A ++F EM  ++++SW+ ++        
Sbjct: 28  VHGVAIKLGCIVSTFLCNNLLYAYLRRQVPADARRLFDEMPRRNLVSWSVVISGSAHHGV 87

Query: 232 AGDALKIFREM-----RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
             +A  +F  M       S    D+  L  L++  +   D+  G Q+HA V   G+  + 
Sbjct: 88  LAEAFALFSHMLHGAGHGSWDRPDSFTLGALVAGCSRARDVDAGMQVHACVAKFGVDEDD 147

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA---REALNQFIKM 343
            ++ +++ MY+KCG +DSS   F    ++S++SWT++I+  V  G +     +L  F KM
Sbjct: 148 SVAAALVDMYAKCGWVDSSWRAFTLAPQRSVLSWTSMIACLVNQGSSGYYDTSLLLFKKM 207

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
              K    ++ T   IL        L + +QLHG   + G     ++   L++ Y +CG 
Sbjct: 208 LALKVWPTNA-TYSCILKVFDTPDLLSVGMQLHGCLLKMGTEVDTALGTALMTMYGRCGG 266

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           VD   I         D +S   ++  Y   G+   A+ ++ +M       D S    +L 
Sbjct: 267 VD--EIPRLACRIRHDALSRTALLGAYARTGYNAEAIGVFKEMIMKNMAIDQSAMTGMLQ 324

Query: 464 ACGHAG 469
            C   G
Sbjct: 325 VCSSFG 330


>gi|449463631|ref|XP_004149535.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 741

 Score =  251 bits (642), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 186/621 (29%), Positives = 293/621 (47%), Gaps = 117/621 (18%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           I  YNS  ++S Y K+G+I  A  LFD +P++N+VSW+ +I GY  N   E + + F  M
Sbjct: 46  IVTYNS--MISAYAKNGRIANARELFDLMPQRNLVSWNSMIAGYLHNELVEDAARLFDRM 103

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSC-NAI 121
               +   S+T++       G   LE AR             +LF  L +     C NA+
Sbjct: 104 FKRDIY--SWTLMITCYTRIG--ELEKAR-------------ELFNLLPDKQDTVCRNAL 146

Query: 122 VAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL-CELIHGLTIKLG 180
           +AG+   +LF++A  LF+      LV N V+  +++ G    G   L  +    +  +  
Sbjct: 147 IAGYAKKRLFREAKKLFD----EMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAMGER-- 200

Query: 181 LILDVSVNNSVLDMYSCLMDLDAAIQIFR------------------------------- 209
              +V   N ++D Y  + DLD+A   F+                               
Sbjct: 201 ---NVVSWNLMVDGYVGVGDLDSAWMFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFN 257

Query: 210 EMECKDVISWTRMMGLFVDFEYAGDALKIFREMR---------------------KSRII 248
           EM  K+++SW  M+G +V      DA K+F EM                      ++R I
Sbjct: 258 EMPTKNLVSWNAMIGAYVRENQIDDAYKLFMEMPEKDSVSWTAMINGYVRVGKLLQAREI 317

Query: 249 CDTVALLNLISVNAIL------GDLKRGKQLHAQVVL----------------GGLQSEL 286
            + +   N+ +  A++      G +    ++ +Q+ +                G     L
Sbjct: 318 LNLMPYKNIAAQTAMINGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTDEAL 377

Query: 287 RL-----------SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
           RL            N++IA Y++ G +D +  +FN++ E+++VSW ++I+GYVQNG   E
Sbjct: 378 RLFQEMVCKDMVSWNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFE 437

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLI 395
           ALN FI M+Q+  +  D  T+V  L AS  LAAL + +QLH +  + GF     V+N ++
Sbjct: 438 ALNCFILMKQQ-GEKPDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAIL 496

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
           + Y+K G V  A  VF E+   +DVVSWN++I GY +NG G+ A+ L+  M   G +PD 
Sbjct: 497 TMYAKSGRVPEAENVFAEIKN-KDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDE 555

Query: 456 STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAG 515
            T+  +L+AC H G  + GL +F  M E   +KP  EHY CV++LL R G L +A  +  
Sbjct: 556 VTFTGLLSACNHGGFVDQGLNLFKSMTETYSIKPQSEHYACVINLLGRVGRLEEAVEIVQ 615

Query: 516 KLLEGMGPNIWRALLSGCVLH 536
            +       IW ALL  C +H
Sbjct: 616 GMKTVSSAKIWGALLWACRIH 636



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 93/181 (51%), Gaps = 22/181 (12%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C D  + + +++ Y ++G++ +A  +F+E+ E+NVVSW+ +I GY  NG + +++  F  
Sbjct: 385 CKDMVSWNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFIL 444

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL--------------- 106
           M   G  P+  T+V  L A+A L  L +   +H L +K G  +DL               
Sbjct: 445 MKQQGEKPDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGR 504

Query: 107 -------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                  F  +KN  +VS N+++AG+  N   ++AV LF      G++P+ VT   ++  
Sbjct: 505 VPEAENVFAEIKNKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSA 564

Query: 160 C 160
           C
Sbjct: 565 C 565



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 130/312 (41%), Gaps = 66/312 (21%)

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
            N  I+   + G ++ + +VF Q+TE+++V++ ++IS Y +NG    A   F  M Q   
Sbjct: 18  QNLRISQLGRSGRIEEAVAVFLQMTERNIVTYNSMISAYAKNGRIANARELFDLMPQRNL 77

Query: 349 DSVDSI--------------------------TLVSILTASGELAALEICLQLHGI---- 378
            S +S+                          +   ++T    +  LE   +L  +    
Sbjct: 78  VSWNSMIAGYLHNELVEDAARLFDRMFKRDIYSWTLMITCYTRIGELEKARELFNLLPDK 137

Query: 379 -------AFEAGFPRYRSVQ-----------------NCLISSYSKCGNVDLAYIVFEEM 414
                  A  AG+ + R  +                 N ++S Y+K G + L    FE M
Sbjct: 138 QDTVCRNALIAGYAKKRLFREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAM 197

Query: 415 GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDG 474
           G  R+VVSWN ++ GY   G  ++A   + K+      P+  +++++L+   H G   + 
Sbjct: 198 G-ERNVVSWNLMVDGYVGVGDLDSAWMFFKKIP----TPNVVSWVTMLSGFAHYGRMTEA 252

Query: 475 LVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCV 534
             +FN+M  +N V      +  ++    R   + DA  L  ++ E    + W A+++G V
Sbjct: 253 RNLFNEMPTKNLVS-----WNAMIGAYVRENQIDDAYKLFMEMPEKDSVS-WTAMINGYV 306

Query: 535 LHVGRFQDAEAL 546
             VG+   A  +
Sbjct: 307 -RVGKLLQAREI 317


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  251 bits (642), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 180/602 (29%), Positives = 284/602 (47%), Gaps = 109/602 (18%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  D ++ + +L+ Y ++ ++ EA  LFD +P+K+VVSW+ ++ GY+ NGF +++ + F+
Sbjct: 104 PERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFN 163

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNA 120
            M       NS +  G+L A      L+ AR              LFE   N  L+S N 
Sbjct: 164 KMPHR----NSISWNGLLAAYVHNGRLKEARR-------------LFESQSNWELISWNC 206

Query: 121 IVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLG 180
           ++ G++   +   A  LF+       +P                                
Sbjct: 207 LMGGYVKRNMLGDARQLFD------RMP-------------------------------- 228

Query: 181 LILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFR 240
            + DV   N+++  Y+ + DL  A ++F E   +DV +WT M+  +V      +A K F 
Sbjct: 229 -VRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFD 287

Query: 241 EMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSN-----SIIAM 295
           EM           + N IS NA+L    + K++   V+ G L   +   N     ++I  
Sbjct: 288 EM----------PVKNEISYNAMLAGYVQYKKM---VIAGELFEAMPCRNISSWNTMITG 334

Query: 296 YSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSIT 355
           Y + G +  +R +F+ + ++  VSW AIISGY QNG   EALN F++M+++  +S +  T
Sbjct: 335 YGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRD-GESSNRST 393

Query: 356 LVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMG 415
               L+   ++AALE+  Q+HG   +AGF     V N L+  Y KCG+ D A  VFE + 
Sbjct: 394 FSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIE 453

Query: 416 FLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGL 475
             +DVVSWNT+I GY  +G G  AL L+  M + G  PD  T + +L+AC H+GL + G 
Sbjct: 454 -EKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGT 512

Query: 476 VIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVL 535
             F  M  +  VKP+ +HY C++DLL RAG L +A  L   +    G   W ALL    +
Sbjct: 513 EYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGALLGASRI 572

Query: 536 H---------------------------------VGRFQDAEALRSGSQKKGIIKIPGIS 562
           H                                  GR+ D   +RS  ++ G+ K+ G S
Sbjct: 573 HGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDVGKMRSKMREAGVQKVTGYS 632

Query: 563 FL 564
           ++
Sbjct: 633 WV 634



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 90/208 (43%), Gaps = 22/208 (10%)

Query: 241 EMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCG 300
            MR SR +C           N      +R    ++   +     ++   N  I+ + + G
Sbjct: 11  RMRNSRCLC----------TNNYYRSKRRSTNSYSPSSVKFKDPDIVTWNKAISSHMRNG 60

Query: 301 DLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSIL 360
             DS+  VFN +  +S VS+ A+ISGY++N     A + F KM +      D  +   +L
Sbjct: 61  HCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDKMPER-----DLFSWNVML 115

Query: 361 TASGELAALEICLQLHGIAFEAGFPRYRSVQ-NCLISSYSKCGNVDLAYIVFEEMGFLRD 419
           T       L    +L  +      P+   V  N ++S Y++ G VD A  VF +M   R+
Sbjct: 116 TGYVRNRRLGEAHKLFDL-----MPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMPH-RN 169

Query: 420 VVSWNTIIYGYGVNGHGETALALYHKMT 447
            +SWN ++  Y  NG  + A  L+   +
Sbjct: 170 SISWNGLLAAYVHNGRLKEARRLFESQS 197



 Score = 47.0 bits (110), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 89/207 (42%), Gaps = 19/207 (9%)

Query: 311 QITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALE 370
           +  +  +V+W   IS +++NG    AL  F  M +  + S +++    +  A   LA   
Sbjct: 40  KFKDPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLAR-- 97

Query: 371 ICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGY 430
                    F+    R     N +++ Y +   +  A+ +F+ M   +DVVSWN ++ GY
Sbjct: 98  -------DLFDKMPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMP-KKDVVSWNAMLSGY 149

Query: 431 GVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPS 490
             NG  + A  +++KM       +S ++  +L A  H G   +   +F     E++    
Sbjct: 150 AQNGFVDEAREVFNKMPHR----NSISWNGLLAAYVHNGRLKEARRLF-----ESQSNWE 200

Query: 491 QEHYGCVVDLLARAGCLSDASGLAGKL 517
              + C++    +   L DA  L  ++
Sbjct: 201 LISWNCLMGGYVKRNMLGDARQLFDRM 227


>gi|115466810|ref|NP_001057004.1| Os06g0185700 [Oryza sativa Japonica Group]
 gi|55773755|dbj|BAD72438.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595044|dbj|BAF18918.1| Os06g0185700 [Oryza sativa Japonica Group]
 gi|125596287|gb|EAZ36067.1| hypothetical protein OsJ_20377 [Oryza sativa Japonica Group]
          Length = 673

 Score =  251 bits (642), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 172/611 (28%), Positives = 302/611 (49%), Gaps = 60/611 (9%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           +KLLS Y   G +  A  + D  P  +  ++ +++      G H  ++     M      
Sbjct: 59  TKLLSCYAALGDLASARGVLDGTPRPDAYAYRVMLGWLVDAGSHADAVALHRDMRRRCPA 118

Query: 69  PNSFTMVGVLVAAAGLQ--NLELARSIHGLMVKFG-------------------LES--D 105
                +V  L   A ++  +    R +H  +VK G                   LE+   
Sbjct: 119 AAQADVVLSLALKACVRSADFRYGRRLHCDVVKAGGADGFVMNSLVDMYAKAGDLENARK 178

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F+ +    +VS  ++++G I N + ++ ++LFN  R   + P+  TM++V+  C  LG 
Sbjct: 179 VFDRVPERNVVSWTSMLSGSIQNGIAEEGLVLFNEMRQDNVHPSEYTMVSVLAACAMLGG 238

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
                 IHG  IK GL  +  ++ S+LDMY+    ++ A ++F E+E  D++ WT M+  
Sbjct: 239 LHQGRWIHGSVIKYGLSTNSFISASLLDMYAKCEKVEDARRVFDELEFVDIVLWTAMIVG 298

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA-QVVLGGLQS 284
           +   +   DAL++F   +   I+ ++V +  +IS +A L  L  G+ +HA  V LG ++S
Sbjct: 299 YTQNKRPLDALQLFLHKKFVSIVPNSVTIATVISASAQLRHLPLGRSVHAIGVKLGTMES 358

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           ++ + N+++ MY+KC  L  + S+F +I  K +V+W ++++GY +NG A E+L  F +MR
Sbjct: 359 DV-VRNALVDMYAKCQALPEANSIFGRILIKDVVAWNSMMAGYSENGMANESLVLFNRMR 417

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
            +   S D+I++V+ L+A   LA L I    H  A +  F     V   L++ YSKC ++
Sbjct: 418 MQGI-SPDAISVVNALSACVCLADLHIGKGFHTYAIKYAFMSNIYVNTALLNLYSKCADL 476

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
             A  VF +M   R+ V+W+ +I GYG+ G    ++ L+++M +    P+   + SIL+A
Sbjct: 477 PSAQRVFNDMTD-RNSVTWSAMIGGYGMQGDSAGSIDLFNEMLKENIHPNEVVFTSILSA 535

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C H G+   G   F+ M     + PS +HY C+VD++ARAG L +A      +    G +
Sbjct: 536 CSHTGMVTAGKEYFDSMARHFNITPSMKHYACMVDVMARAGNLEEALEFIQNMPIKAGIS 595

Query: 525 IWRALLSGCVLH---------------------------------VGRFQDAEALRSGSQ 551
           +W + L GC LH                                  GR+  ++ +R   Q
Sbjct: 596 VWGSFLHGCKLHSRLEFGEEAIKKMAALHPETPDFYVLMSNLYTSYGRWDKSQTIRRWMQ 655

Query: 552 KKGIIKIPGIS 562
           ++G++K+PG S
Sbjct: 656 EQGLVKLPGCS 666



 Score =  204 bits (520), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 141/514 (27%), Positives = 245/514 (47%), Gaps = 37/514 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L+  Y K+G ++ A  +FD +PE+NVVSW+ ++ G   NG  E+ +  F+ M 
Sbjct: 156 DGFVMNSLVDMYAKAGDLENARKVFDRVPERNVVSWTSMLSGSIQNGIAEEGLVLFNEMR 215

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
              + P+ +TMV VL A A L  L   R IHG ++K+GL ++                  
Sbjct: 216 QDNVHPSEYTMVSVLAACAMLGGLHQGRWIHGSVIKYGLSTNSFISASLLDMYAKCEKVE 275

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +F+ L+   +V   A++ G+  NK    A+ LF   +   +VPN+VT+ TVI    
Sbjct: 276 DARRVFDELEFVDIVLWTAMIVGYTQNKRPLDALQLFLHKKFVSIVPNSVTIATVISASA 335

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            L    L   +H + +KLG +    V N+++DMY+    L  A  IF  +  KDV++W  
Sbjct: 336 QLRHLPLGRSVHAIGVKLGTMESDVVRNALVDMYAKCQALPEANSIFGRILIKDVVAWNS 395

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           MM  + +   A ++L +F  MR   I  D ++++N +S    L DL  GK  H   +   
Sbjct: 396 MMAGYSENGMANESLVLFNRMRMQGISPDAISVVNALSACVCLADLHIGKGFHTYAIKYA 455

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
             S + ++ +++ +YSKC DL S++ VFN +T+++ V+W+A+I GY   G +  +++ F 
Sbjct: 456 FMSNIYVNTALLNLYSKCADLPSAQRVFNDMTDRNSVTWSAMIGGYGMQGDSAGSIDLFN 515

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN------CLI 395
           +M +E     + +   SIL+A      +       G  +     R+ ++        C++
Sbjct: 516 EMLKENIHP-NEVVFTSILSACSHTGMVTA-----GKEYFDSMARHFNITPSMKHYACMV 569

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTE-TGEVPD 454
              ++ GN++ A    + M     +  W + ++G  ++   E       KM     E PD
Sbjct: 570 DVMARAGNLEEALEFIQNMPIKAGISVWGSFLHGCKLHSRLEFGEEAIKKMAALHPETPD 629

Query: 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVK 488
              Y+ + N     G  +    I   M E+  VK
Sbjct: 630 --FYVLMSNLYTSYGRWDKSQTIRRWMQEQGLVK 661



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 173/344 (50%), Gaps = 22/344 (6%)

Query: 185 VSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRK 244
           +     +L  Y+ L DL +A  +       D  ++  M+G  VD     DA+ + R+MR+
Sbjct: 55  IRARTKLLSCYAALGDLASARGVLDGTPRPDAYAYRVMLGWLVDAGSHADAVALHRDMRR 114

Query: 245 SRIICDTVALLNLISVNAIL-----GDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKC 299
               C   A  +++   A+       D + G++LH  VV  G  ++  + NS++ MY+K 
Sbjct: 115 R---CPAAAQADVVLSLALKACVRSADFRYGRRLHCDVVKAG-GADGFVMNSLVDMYAKA 170

Query: 300 GDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSI 359
           GDL+++R VF+++ E+++VSWT+++SG +QNG A E L  F +MRQ+     +  T+VS+
Sbjct: 171 GDLENARKVFDRVPERNVVSWTSMLSGSIQNGIAEEGLVLFNEMRQDNVHPSE-YTMVSV 229

Query: 360 LTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRD 419
           L A   L  L     +HG   + G      +   L+  Y+KC  V+ A  VF+E+ F+ D
Sbjct: 230 LAACAMLGGLHQGRWIHGSVIKYGLSTNSFISASLLDMYAKCEKVEDARRVFDELEFV-D 288

Query: 420 VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH-----AGLTNDG 474
           +V W  +I GY  N     AL L+        VP+S T  ++++A         G +   
Sbjct: 289 IVLWTAMIVGYTQNKRPLDALQLFLHKKFVSIVPNSVTIATVISASAQLRHLPLGRSVHA 348

Query: 475 LVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
           + +    +E + V+        +VD+ A+   L +A+ + G++L
Sbjct: 349 IGVKLGTMESDVVR------NALVDMYAKCQALPEANSIFGRIL 386


>gi|357457743|ref|XP_003599152.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488200|gb|AES69403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  251 bits (642), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 153/553 (27%), Positives = 274/553 (49%), Gaps = 30/553 (5%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ L+S +     ++EA  +F+ + E++ +SW+ +I   + NG  E+S+  F  M  +  
Sbjct: 389 ANSLISMFGNYDSVEEASRVFNNMQERDTISWNSIITASAHNGRFEESLGHFFWMRRTHP 448

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL--------------------- 106
             +  T+  +L A    Q+L+  R +HGL+ K GLES++                     
Sbjct: 449 KTDYITISALLPACGSAQHLKWGRGLHGLITKSGLESNVCVCNSLLSMYAQAGSSEDAEL 508

Query: 107 -FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
            F  +    L+S N+++A  + +  +  A+LL      +    N VT  T +  C  L  
Sbjct: 509 VFHTMPARDLISWNSMMASHVEDGKYSHAILLLVEMLKTRKAMNYVTFTTALSACYNLEK 568

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
               +++H   I   +  ++ + N+++ MY     +D A ++ + M  +DV++W  ++G 
Sbjct: 569 ---LKIVHAFVIHFAVHHNLIIGNTLVTMYGKFGLMDEAQKVCKIMPERDVVTWNALIGG 625

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGD--LKRGKQLHAQVVLGGLQ 283
             D +     ++ F  MR+  ++ + + ++NL+    +  D  LK G  +HA +V+ G +
Sbjct: 626 HADDKDPNATIQAFNLMRREGLLSNYITIVNLLGT-CMSPDYLLKHGMPIHAHIVVAGFE 684

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
            +  + +S+I MY++CGDL++S  +F+ +  K+  +W AI S     G   EAL    +M
Sbjct: 685 LDTYVQSSLITMYAQCGDLNTSSYIFDVLANKNSSTWNAIFSANAHYGPGEEALKFIARM 744

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
           R +  D +D  +    L   G L  L+   QLH    + GF     V N  +  Y KCG 
Sbjct: 745 RNDGVD-LDQFSFSVALATIGNLTVLDEGQQLHSWIIKLGFELDEYVLNATMDMYGKCGE 803

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           +D  + +   +  +R   SWN +I     +G    A   +H+M + G  PD  T++S+L+
Sbjct: 804 IDDVFRILP-IPKIRSKRSWNILISALARHGFFRQATEAFHEMLDLGLKPDHVTFVSLLS 862

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
           AC H GL ++GLV F+ M  E  V  + EH  C++DLL R+G L++A G   K+      
Sbjct: 863 ACSHGGLVDEGLVYFSSMTSEFGVPTAIEHCVCIIDLLGRSGRLAEAEGFIDKMPVPPNE 922

Query: 524 NIWRALLSGCVLH 536
            +WR+LL+ C +H
Sbjct: 923 FVWRSLLAACKVH 935



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 130/487 (26%), Positives = 248/487 (50%), Gaps = 31/487 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           + + ++ L++ Y K G IK A+++FD++ ++N  SW+ +I G+   G++ K+M+ F HM 
Sbjct: 181 NTFYTNTLVNMYSKFGSIKYAQHVFDKMYDRNDASWNNMISGFVRVGWYHKAMQFFCHMF 240

Query: 64  LSGLLPNSFTMVGVLVAA--AGLQNLELARSIHGLMVKFGLESD---------------- 105
            +G+ P+S+ +  ++ A   +G    E AR IHG +VK GL S+                
Sbjct: 241 ENGVTPSSYVIASMVTACDRSGCMT-EGARQIHGYVVKCGLMSNVFVGTSLLHFYGTHGS 299

Query: 106 ------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                 LFE ++ P +VS  +++  + +N   ++ + ++   R +GL+    TM TVIR 
Sbjct: 300 VSEANKLFEEIEEPNIVSWTSLMVCYADNGHTKEVLNIYRHLRHNGLICTGNTMATVIRT 359

Query: 160 CVALGSRALCELIHGLTIKLGL-ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
           C   G + +   I G  IK GL    VSV NS++ M+     ++ A ++F  M+ +D IS
Sbjct: 360 CGMFGDKTMGYQILGDVIKSGLDTSSVSVANSLISMFGNYDSVEEASRVFNNMQERDTIS 419

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           W  ++          ++L  F  MR++    D + +  L+        LK G+ LH  + 
Sbjct: 420 WNSIITASAHNGRFEESLGHFFWMRRTHPKTDYITISALLPACGSAQHLKWGRGLHGLIT 479

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
             GL+S + + NS+++MY++ G  + +  VF+ +  + L+SW ++++ +V++G    A+ 
Sbjct: 480 KSGLESNVCVCNSLLSMYAQAGSSEDAELVFHTMPARDLISWNSMMASHVEDGKYSHAIL 539

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
             ++M + +  +++ +T  + L+A   L  L+I   +H             + N L++ Y
Sbjct: 540 LLVEMLKTR-KAMNYVTFTTALSACYNLEKLKI---VHAFVIHFAVHHNLIIGNTLVTMY 595

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
            K G +D A  V + M   RDVV+WN +I G+  +      +  ++ M   G + +  T 
Sbjct: 596 GKFGLMDEAQKVCKIMP-ERDVVTWNALIGGHADDKDPNATIQAFNLMRREGLLSNYITI 654

Query: 459 LSILNAC 465
           +++L  C
Sbjct: 655 VNLLGTC 661



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 107/390 (27%), Positives = 200/390 (51%), Gaps = 15/390 (3%)

Query: 85  QNLELARSIHGLMVKFG---LESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFF 141
           QN     ++  +  KFG       +F+ + +    S N +++GF+    + +A+  F   
Sbjct: 180 QNTFYTNTLVNMYSKFGSIKYAQHVFDKMYDRNDASWNNMISGFVRVGWYHKAMQFFCHM 239

Query: 142 RGSGLVPNAVTMLTVI-----RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYS 196
             +G+ P++  + +++      GC+  G+R     IHG  +K GL+ +V V  S+L  Y 
Sbjct: 240 FENGVTPSSYVIASMVTACDRSGCMTEGARQ----IHGYVVKCGLMSNVFVGTSLLHFYG 295

Query: 197 CLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLN 256
               +  A ++F E+E  +++SWT +M  + D  +  + L I+R +R + +IC    +  
Sbjct: 296 THGSVSEANKLFEEIEEPNIVSWTSLMVCYADNGHTKEVLNIYRHLRHNGLICTGNTMAT 355

Query: 257 LISVNAILGDLKRGKQLHAQVVLGGLQ-SELRLSNSIIAMYSKCGDLDSSRSVFNQITEK 315
           +I    + GD   G Q+   V+  GL  S + ++NS+I+M+     ++ +  VFN + E+
Sbjct: 356 VIRTCGMFGDKTMGYQILGDVIKSGLDTSSVSVANSLISMFGNYDSVEEASRVFNNMQER 415

Query: 316 SLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQL 375
             +SW +II+    NG   E+L  F  MR+    + D IT+ ++L A G    L+    L
Sbjct: 416 DTISWNSIITASAHNGRFEESLGHFFWMRRTHPKT-DYITISALLPACGSAQHLKWGRGL 474

Query: 376 HGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGH 435
           HG+  ++G      V N L+S Y++ G+ + A +VF  M   RD++SWN+++  +  +G 
Sbjct: 475 HGLITKSGLESNVCVCNSLLSMYAQAGSSEDAELVFHTMP-ARDLISWNSMMASHVEDGK 533

Query: 436 GETALALYHKMTETGEVPDSSTYLSILNAC 465
              A+ L  +M +T +  +  T+ + L+AC
Sbjct: 534 YSHAILLLVEMLKTRKAMNYVTFTTALSAC 563



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 143/299 (47%), Gaps = 4/299 (1%)

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           +H L +K  +  +    N++++MYS    +  A  +F +M  ++  SW  M+  FV   +
Sbjct: 169 LHALCVKDVIQQNTFYTNTLVNMYSKFGSIKYAQHVFDKMYDRNDASWNNMISGFVRVGW 228

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG-KQLHAQVVLGGLQSELRLSN 290
              A++ F  M ++ +   +  + ++++     G +  G +Q+H  VV  GL S + +  
Sbjct: 229 YHKAMQFFCHMFENGVTPSSYVIASMVTACDRSGCMTEGARQIHGYVVKCGLMSNVFVGT 288

Query: 291 SIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDS 350
           S++  Y   G +  +  +F +I E ++VSWT+++  Y  NG  +E LN +  +R      
Sbjct: 289 SLLHFYGTHGSVSEANKLFEEIEEPNIVSWTSLMVCYADNGHTKEVLNIYRHLRHNGLIC 348

Query: 351 VDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYR-SVQNCLISSYSKCGNVDLAYI 409
             + T+ +++   G      +  Q+ G   ++G      SV N LIS +    +V+ A  
Sbjct: 349 TGN-TMATVIRTCGMFGDKTMGYQILGDVIKSGLDTSSVSVANSLISMFGNYDSVEEASR 407

Query: 410 VFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
           VF  M   RD +SWN+II     NG  E +L  +  M  T    D  T  ++L ACG A
Sbjct: 408 VFNNMQ-ERDTISWNSIITASAHNGRFEESLGHFFWMRRTHPKTDYITISALLPACGSA 465



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 130/275 (47%), Gaps = 5/275 (1%)

Query: 270 GKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQ 329
           GK LHA  V   +Q     +N+++ MYSK G +  ++ VF+++ +++  SW  +ISG+V+
Sbjct: 166 GKALHALCVKDVIQQNTFYTNTLVNMYSKFGSIKYAQHVFDKMYDRNDASWNNMISGFVR 225

Query: 330 NGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAAL-EICLQLHGIAFEAGFPRYR 388
            G   +A+  F  M  E   +  S  + S++TA      + E   Q+HG   + G     
Sbjct: 226 VGWYHKAMQFFCHMF-ENGVTPSSYVIASMVTACDRSGCMTEGARQIHGYVVKCGLMSNV 284

Query: 389 SVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTE 448
            V   L+  Y   G+V  A  +FEE+    ++VSW +++  Y  NGH +  L +Y  +  
Sbjct: 285 FVGTSLLHFYGTHGSVSEANKLFEEIE-EPNIVSWTSLMVCYADNGHTKEVLNIYRHLRH 343

Query: 449 TGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLS 508
            G +   +T  +++  CG  G    G  I   +I+      S      ++ +      + 
Sbjct: 344 NGLICTGNTMATVIRTCGMFGDKTMGYQILGDVIKSGLDTSSVSVANSLISMFGNYDSVE 403

Query: 509 DASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDA 543
           +AS +   + E    + W ++++    H GRF+++
Sbjct: 404 EASRVFNNMQERDTIS-WNSIITASA-HNGRFEES 436



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 77/180 (42%), Gaps = 22/180 (12%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D Y  S L++ Y + G +  +  +FD +  KN  +W+ +    +  G  E+++K  + M
Sbjct: 685 LDTYVQSSLITMYAQCGDLNTSSYIFDVLANKNSSTWNAIFSANAHYGPGEEALKFIARM 744

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE------------------- 103
              G+  + F+    L     L  L+  + +H  ++K G E                   
Sbjct: 745 RNDGVDLDQFSFSVALATIGNLTVLDEGQQLHSWIIKLGFELDEYVLNATMDMYGKCGEI 804

Query: 104 SDLFEGLKNPYL---VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
            D+F  L  P +    S N +++    +  F+QA   F+     GL P+ VT ++++  C
Sbjct: 805 DDVFRILPIPKIRSKRSWNILISALARHGFFRQATEAFHEMLDLGLKPDHVTFVSLLSAC 864


>gi|297823163|ref|XP_002879464.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325303|gb|EFH55723.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 713

 Score =  251 bits (642), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 174/573 (30%), Positives = 297/573 (51%), Gaps = 27/573 (4%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKS---MKAFSHMMLSGL 67
           L++ Y K G++ +A ++F+ I  K+VVSW+ +I GYS NG    S   M+ F  M    +
Sbjct: 57  LVNFYAKCGQLAKAHSIFNAIICKDVVSWNSLITGYSQNGGISSSHTVMQLFREMRAQDI 116

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF-----------EGLKNPYLV 116
           LPN++T+ G+  A + LQ+  + R  H L+VK     D++            GLK  Y+V
Sbjct: 117 LPNAYTLAGIFKAESSLQSCTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLKYLYMV 176

Query: 117 SCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLT-VIRGCVALGSRALCELIHGL 175
                +  +  + L +Q      F        ++  + T V+    A     L   IHG+
Sbjct: 177 YYGFWLC-YKKDVLRRQLKSSICFLEEKEKESDSDYVFTAVLSSLAATVYVGLGRQIHGI 235

Query: 176 TIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDA 235
           T+K GL+  V+++N+++ MYS    L+ A ++F     ++ I+W+ M+  +     + +A
Sbjct: 236 TVKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEA 295

Query: 236 LKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAM 295
           +K+F  M  + I      ++ +++  + +  L  GKQLH+ ++  G +  L  + +++ M
Sbjct: 296 IKLFSRMFSAGIKPSEYTIVGVLNACSDICYLVEGKQLHSFLLKLGFERHLFATTALVDM 355

Query: 296 YSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV--DS 353
           Y+K G L  +R  F+ + E+ +  WT++ISGYVQN    EAL   I  R+ KT  +  + 
Sbjct: 356 YAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEAL---ILYRRMKTAGIIPND 412

Query: 354 ITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEE 413
            T+ S+L A   LA LE+  Q+HG   + GF     + + L + Y+KCG+++   +VF  
Sbjct: 413 PTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALSTMYTKCGSLEDGNLVFRR 472

Query: 414 MGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTND 473
               +DVVSWN +I G   NG G+ AL L+ +M   G  PD  T+++I++AC H G    
Sbjct: 473 TPN-KDVVSWNAMISGLSHNGQGDEALELFEEMLAEGTEPDDVTFVNIISACSHKGFVER 531

Query: 474 GLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGC 533
           G   F+ M ++  + P  +HY C+VD+L+RAG L +            G  +WR LLS C
Sbjct: 532 GWSYFHMMSDQFGLDPKVDHYACMVDVLSRAGQLKETKEFIESASIDHGLCLWRILLSAC 591

Query: 534 VLH----VGRFQDAEALRSGSQKKGI-IKIPGI 561
             H    +G +   + +  GS++    +++ GI
Sbjct: 592 KNHGNCELGVYAGEKLMSLGSRESSTYVQLAGI 624



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 100/406 (24%), Positives = 178/406 (43%), Gaps = 38/406 (9%)

Query: 139 NFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCL 198
           N F  +  +  A+T  +  R  VA   RA    +H   I+ G        N +++ Y+  
Sbjct: 11  NPFSHTSTLLKALTHHSQHRNLVA--GRA----VHAQIIRTGTSTCTQHANVLVNFYAKC 64

Query: 199 MDLDAAIQIFREMECKDVISWTRMMGLFVD---FEYAGDALKIFREMRKSRIICDTVALL 255
             L  A  IF  + CKDV+SW  ++  +        +   +++FREMR   I+ +   L 
Sbjct: 65  GQLAKAHSIFNAIICKDVVSWNSLITGYSQNGGISSSHTVMQLFREMRAQDILPNAYTLA 124

Query: 256 NLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK 315
            +    + L     G+Q HA VV      ++ +  S++ MY K G               
Sbjct: 125 GIFKAESSLQSCTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAG--------------- 169

Query: 316 SLVSWTAIISGY---VQNGCAREALNQFIKMRQEKTDSVDS-ITLVSILTASGELAALEI 371
            L     +  G+    +    R  L   I   +EK    DS     ++L++      + +
Sbjct: 170 -LKYLYMVYYGFWLCYKKDVLRRQLKSSICFLEEKEKESDSDYVFTAVLSSLAATVYVGL 228

Query: 372 CLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYG 431
             Q+HGI  + G   + ++ N L++ YSKC +++ A  +F+  G  R+ ++W+ ++ GY 
Sbjct: 229 GRQIHGITVKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGD-RNSITWSAMVTGYS 287

Query: 432 VNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIE---ENKVK 488
            NG    A+ L+ +M   G  P   T + +LNAC       +G  + + +++   E  + 
Sbjct: 288 QNGESLEAIKLFSRMFSAGIKPSEYTIVGVLNACSDICYLVEGKQLHSFLLKLGFERHLF 347

Query: 489 PSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCV 534
            +      +VD+ A+AGCL+DA       L+     +W +L+SG V
Sbjct: 348 ATT----ALVDMYAKAGCLADARK-GFDCLQERDVALWTSLISGYV 388



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 105/220 (47%), Gaps = 32/220 (14%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           + ++ L+  Y K+G + +A   FD + E++V  W+ +I GY  N  +E+++  +  M  +
Sbjct: 347 FATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTA 406

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK--FGLESDL----------------- 106
           G++PN  TM  VL A + L  LEL + +HG  +K  FGLE  +                 
Sbjct: 407 GIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALSTMYTKCGSLEDG 466

Query: 107 ---FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
              F    N  +VS NA+++G  +N    +A+ LF      G  P+ VT + +I  C   
Sbjct: 467 NLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGTEPDDVTFVNIISACSHK 526

Query: 164 G--SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDL 201
           G   R      H ++ + GL       +  +D Y+C++D+
Sbjct: 527 GFVERGW-SYFHMMSDQFGL-------DPKVDHYACMVDV 558


>gi|334184142|ref|NP_178563.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|334302883|sp|Q9SJ73.3|PP148_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g04860
 gi|330250783|gb|AEC05877.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 692

 Score =  251 bits (642), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 165/553 (29%), Positives = 275/553 (49%), Gaps = 29/553 (5%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y  + LL+ Y K G +  A+ LFDE+PE++ V W+ +I GYS NG+   + K F  M+  
Sbjct: 86  YVKTSLLNLYLKKGCVTSAQMLFDEMPERDTVVWNALICGYSRNGYECDAWKLFIVMLQQ 145

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-------------------- 105
           G  P++ T+V +L        +   RS+HG+  K GLE D                    
Sbjct: 146 GFSPSATTLVNLLPFCGQCGFVSQGRSVHGVAAKSGLELDSQVKNALISFYSKCAELGSA 205

Query: 106 --LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
             LF  +K+   VS N ++  +  + L ++A+ +F       +  + VT++ ++   V+ 
Sbjct: 206 EVLFREMKDKSTVSWNTMIGAYSQSGLQEEAITVFKNMFEKNVEISPVTIINLLSAHVSH 265

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
                 E +H L +K G++ D+SV  S++  YS    L +A +++   +   ++  T ++
Sbjct: 266 ------EPLHCLVVKCGMVNDISVVTSLVCAYSRCGCLVSAERLYASAKQDSIVGLTSIV 319

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
             + +      A+  F + R+  +  D VAL+ ++        +  G  LH   +  GL 
Sbjct: 320 SCYAEKGDMDIAVVYFSKTRQLCMKIDAVALVGILHGCKKSSHIDIGMSLHGYAIKSGLC 379

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
           ++  + N +I MYSK  D+++   +F Q+ E  L+SW ++ISG VQ+G A  A   F +M
Sbjct: 380 TKTLVVNGLITMYSKFDDVETVLFLFEQLQETPLISWNSVISGCVQSGRASTAFEVFHQM 439

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
                   D+IT+ S+L    +L  L +  +LHG      F     V   LI  Y+KCGN
Sbjct: 440 MLTGGLLPDAITIASLLAGCSQLCCLNLGKELHGYTLRNNFENENFVCTALIDMYAKCGN 499

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
              A  VF+ +       +WN++I GY ++G    AL+ Y +M E G  PD  T+L +L+
Sbjct: 500 EVQAESVFKSIK-APCTATWNSMISGYSLSGLQHRALSCYLEMREKGLKPDEITFLGVLS 558

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
           AC H G  ++G + F  MI+E  + P+ +HY  +V LL RA   ++A  L  K+      
Sbjct: 559 ACNHGGFVDEGKICFRAMIKEFGISPTLQHYALMVGLLGRACLFTEALYLIWKMDIKPDS 618

Query: 524 NIWRALLSGCVLH 536
            +W ALLS C++H
Sbjct: 619 AVWGALLSACIIH 631



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 136/501 (27%), Positives = 236/501 (47%), Gaps = 39/501 (7%)

Query: 59  FSHMMLSGLLPNSFTM--------------------VGVLVAAAGLQNLELAR-SIHGLM 97
           F  ++ S L PN FTM                    V   +  +GL      + S+  L 
Sbjct: 36  FRDLLRSSLTPNHFTMSIFLQATTTSFNSFKLQVEQVQTHLTKSGLDRFVYVKTSLLNLY 95

Query: 98  VKFGLESD---LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTML 154
           +K G  +    LF+ +     V  NA++ G+  N     A  LF      G  P+A T++
Sbjct: 96  LKKGCVTSAQMLFDEMPERDTVVWNALICGYSRNGYECDAWKLFIVMLQQGFSPSATTLV 155

Query: 155 TVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
            ++  C   G  +    +HG+  K GL LD  V N+++  YS   +L +A  +FREM+ K
Sbjct: 156 NLLPFCGQCGFVSQGRSVHGVAAKSGLELDSQVKNALISFYSKCAELGSAEVLFREMKDK 215

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
             +SW  M+G +       +A+ +F+ M +  +    V ++NL+S +         + LH
Sbjct: 216 STVSWNTMIGAYSQSGLQEEAITVFKNMFEKNVEISPVTIINLLSAHV------SHEPLH 269

Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
             VV  G+ +++ +  S++  YS+CG L S+  ++    + S+V  T+I+S Y + G   
Sbjct: 270 CLVVKCGMVNDISVVTSLVCAYSRCGCLVSAERLYASAKQDSIVGLTSIVSCYAEKGDMD 329

Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
            A+  F K RQ     +D++ LV IL    + + ++I + LHG A ++G      V N L
Sbjct: 330 IAVVYFSKTRQ-LCMKIDAVALVGILHGCKKSSHIDIGMSLHGYAIKSGLCTKTLVVNGL 388

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE-VP 453
           I+ YSK  +V+    +FE++     ++SWN++I G   +G   TA  ++H+M  TG  +P
Sbjct: 389 ITMYSKFDDVETVLFLFEQLQ-ETPLISWNSVISGCVQSGRASTAFEVFHQMMLTGGLLP 447

Query: 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGC--VVDLLARAGCLSDAS 511
           D+ T  S+L  C      N G  +    +  N      E++ C  ++D+ A+ G    A 
Sbjct: 448 DAITIASLLAGCSQLCCLNLGKELHGYTLRNNF---ENENFVCTALIDMYAKCGNEVQAE 504

Query: 512 GLAGKLLEGMGPNIWRALLSG 532
            +  K ++      W +++SG
Sbjct: 505 SVF-KSIKAPCTATWNSMISG 524



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/383 (26%), Positives = 185/383 (48%), Gaps = 30/383 (7%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D    + L+S Y K  ++  AE LF E+ +K+ VSW+ +I  YS +G  E+++  F +M
Sbjct: 184 LDSQVKNALISFYSKCAELGSAEVLFREMKDKSTVSWNTMIGAYSQSGLQEEAITVFKNM 243

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
               +  +  T++ +L A    + L      H L+VK G+ +D                 
Sbjct: 244 FEKNVEISPVTIINLLSAHVSHEPL------HCLVVKCGMVNDISVVTSLVCAYSRCGCL 297

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                L+   K   +V   +IV+ +        AV+ F+  R   +  +AV ++ ++ GC
Sbjct: 298 VSAERLYASAKQDSIVGLTSIVSCYAEKGDMDIAVVYFSKTRQLCMKIDAVALVGILHGC 357

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
                  +   +HG  IK GL     V N ++ MYS   D++  + +F +++   +ISW 
Sbjct: 358 KKSSHIDIGMSLHGYAIKSGLCTKTLVVNGLITMYSKFDDVETVLFLFEQLQETPLISWN 417

Query: 221 RMMGLFVDFEYAGDALKIFREMRKS-RIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
            ++   V    A  A ++F +M  +  ++ D + + +L++  + L  L  GK+LH   + 
Sbjct: 418 SVISGCVQSGRASTAFEVFHQMMLTGGLLPDAITIASLLAGCSQLCCLNLGKELHGYTLR 477

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
              ++E  +  ++I MY+KCG+   + SVF  I      +W ++ISGY  +G    AL+ 
Sbjct: 478 NNFENENFVCTALIDMYAKCGNEVQAESVFKSIKAPCTATWNSMISGYSLSGLQHRALSC 537

Query: 340 FIKMRQEKTDSVDSITLVSILTA 362
           +++MR EK    D IT + +L+A
Sbjct: 538 YLEMR-EKGLKPDEITFLGVLSA 559



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 102/421 (24%), Positives = 191/421 (45%), Gaps = 18/421 (4%)

Query: 119 NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV-ALGSRAL-CELIHGLT 176
           ++++   I+ ++    + +F     S L PN  TM   ++    +  S  L  E +    
Sbjct: 17  HSLLKSCIHGEISSSPITIFRDLLRSSLTPNHFTMSIFLQATTTSFNSFKLQVEQVQTHL 76

Query: 177 IKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDAL 236
            K GL   V V  S+L++Y     + +A  +F EM  +D + W  ++  +    Y  DA 
Sbjct: 77  TKSGLDRFVYVKTSLLNLYLKKGCVTSAQMLFDEMPERDTVVWNALICGYSRNGYECDAW 136

Query: 237 KIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMY 296
           K+F  M +         L+NL+      G + +G+ +H      GL+ + ++ N++I+ Y
Sbjct: 137 KLFIVMLQQGFSPSATTLVNLLPFCGQCGFVSQGRSVHGVAAKSGLELDSQVKNALISFY 196

Query: 297 SKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITL 356
           SKC +L S+  +F ++ +KS VSW  +I  Y Q+G   EA+  F  M  EK   +  +T+
Sbjct: 197 SKCAELGSAEVLFREMKDKSTVSWNTMIGAYSQSGLQEEAITVFKNMF-EKNVEISPVTI 255

Query: 357 VSILTA--SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM 414
           +++L+A  S E         LH +  + G     SV   L+ +YS+CG +  A  ++   
Sbjct: 256 INLLSAHVSHE--------PLHCLVVKCGMVNDISVVTSLVCAYSRCGCLVSAERLYASA 307

Query: 415 GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDG 474
                +V   +I+  Y   G  + A+  + K  +     D+   + IL+ C  +   + G
Sbjct: 308 K-QDSIVGLTSIVSCYAEKGDMDIAVVYFSKTRQLCMKIDAVALVGILHGCKKSSHIDIG 366

Query: 475 LVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI-WRALLSGC 533
           + +    I+      +    G ++ + ++   +     L  +L E   P I W +++SGC
Sbjct: 367 MSLHGYAIKSGLCTKTLVVNG-LITMYSKFDDVETVLFLFEQLQE--TPLISWNSVISGC 423

Query: 534 V 534
           V
Sbjct: 424 V 424


>gi|302803813|ref|XP_002983659.1| hypothetical protein SELMODRAFT_328 [Selaginella moellendorffii]
 gi|300148496|gb|EFJ15155.1| hypothetical protein SELMODRAFT_328 [Selaginella moellendorffii]
          Length = 917

 Score =  251 bits (642), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 154/548 (28%), Positives = 286/548 (52%), Gaps = 35/548 (6%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           +++ Y   G+I  A   F  + E++ +SW+ +I G++  GF ++++  F  M+  G+ P+
Sbjct: 347 IMTMYSSCGRIDNAAAFFSTMVERDAISWNTIISGHAQAGFCDEAVHLFRRMLAEGITPD 406

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFE 108
            FT + ++   A +Q    A+ +  LMV+ G+E D                      LF+
Sbjct: 407 KFTFISIIDGTARMQE---AKILSELMVESGVELDVFLVSALINMHSRYGNVREARSLFD 463

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            +K+  +V   +I++ ++ +     A+      R  GL+ N  T++T +  C +L + + 
Sbjct: 464 DMKDRDIVMWTSIISSYVQHGSSDDALGCTRLMRLEGLMGNDFTLVTALNACASLTALSE 523

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC-KDVISWTRMMGLFV 227
            +LIH   I+ G     +V N++++MY+    L+ A ++F +  C K+++SW  +   +V
Sbjct: 524 GKLIHAHAIERGFAASPAVGNALINMYAKCGCLEEADRVFHQ--CGKNLVSWNTIAAAYV 581

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
             +   +AL++F+EM+   +  D V+ + +++          G+++H  ++  G++S+  
Sbjct: 582 QRDKWREALQLFQEMQLEGLKADKVSFVTVLNG---CSSASEGRKIHNILLETGMESDHI 638

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
           +S +++ MY+    LD +  +F+++  + +VSW A+I+G  ++G +REA+  F +M+ E 
Sbjct: 639 VSTALLNMYTASKSLDEASRIFSRMEFRDIVSWNAMIAGKAEHGLSREAIQMFQRMQLEG 698

Query: 348 TDSVDSITLVSILTA--SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
             + D I+ V++L A      ++L+    +  +  + G+     V N ++S + + G + 
Sbjct: 699 V-APDKISFVTVLNAFSGSSPSSLKQARLVEKLISDQGYETDTIVGNAIVSMFGRSGRLA 757

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            A   FE +   RD  SWN I+  +  +G  E AL L+ +M +    PDS T +S+L+AC
Sbjct: 758 EARRAFERIR-ERDAASWNVIVTAHAQHGEVEQALKLFRRMQQESSRPDSITLVSVLSAC 816

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI 525
            H GL  +G   F  M  E  +  SQEHYGCVVDLLARAG L  A  L  K+       +
Sbjct: 817 SHGGLIEEGYHHFTSMGREFGIAGSQEHYGCVVDLLARAGRLDQAEELLRKMPVPASYVL 876

Query: 526 WRALLSGC 533
           W  LLS C
Sbjct: 877 WMTLLSAC 884



 Score =  221 bits (563), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 138/438 (31%), Positives = 241/438 (55%), Gaps = 7/438 (1%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F+ L +P  VS N+++A F  +  FQQA  +F   +  GL P+ +T +TV+ GC A+G 
Sbjct: 59  VFQSLDHPSQVSWNSLLAAFARDGQFQQAFQIFQRMKLQGLAPDRITFVTVLDGCSAIGD 118

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
            +  +L+HG  ++ GL  +V V  S++ MY     ++ A ++F ++  +DV+SWT M+  
Sbjct: 119 LSRGKLLHGFVLEAGLERNVMVGTSLIKMYGKCGCVEDARRVFDKLALQDVVSWTSMIMT 178

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +V  +   +AL++F  MR S ++ + +     IS  A +  +  GK +H+QV+  G +S+
Sbjct: 179 YVQHDRCVEALELFHRMRPSGVLPNRITYATAISACAHVESMADGKLIHSQVLEDGFESD 238

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           + +S +I+ MY KCG L+ +R VF ++   + VSW AI++   Q+GC  EAL  F +M+ 
Sbjct: 239 VVVSCAIVNMYGKCGSLEDAREVFERMPHPNTVSWNAIVAACTQHGCCVEALWYFQRMQL 298

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
           +   + D +T ++IL A    A L     LH    + G+  +  V NC+++ YS CG +D
Sbjct: 299 QGGITPDKVTFITILNACSSPATLTFGELLHECILQCGYDTHLIVGNCIMTMYSSCGRID 358

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            A   F  M   RD +SWNTII G+   G  + A+ L+ +M   G  PD  T++SI++  
Sbjct: 359 NAAAFFSTM-VERDAISWNTIISGHAQAGFCDEAVHLFRRMLAEGITPDKFTFISIID-- 415

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI 525
           G A +      I ++++ E+ V+        ++++ +R G + +A  L    ++     +
Sbjct: 416 GTARMQEAK--ILSELMVESGVELDVFLVSALINMHSRYGNVREARSLFDD-MKDRDIVM 472

Query: 526 WRALLSGCVLHVGRFQDA 543
           W +++S  V H G   DA
Sbjct: 473 WTSIISSYVQH-GSSDDA 489



 Score =  216 bits (549), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 163/585 (27%), Positives = 290/585 (49%), Gaps = 37/585 (6%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + L+  Y K G +++A  +FD++  ++VVSW+ +I  Y  +    ++++ F  M  SG+L
Sbjct: 142 TSLIKMYGKCGCVEDARRVFDKLALQDVVSWTSMIMTYVQHDRCVEALELFHRMRPSGVL 201

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------L 106
           PN  T    + A A ++++   + IH  +++ G ESD                      +
Sbjct: 202 PNRITYATAISACAHVESMADGKLIHSQVLEDGFESDVVVSCAIVNMYGKCGSLEDAREV 261

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFR-GSGLVPNAVTMLTVIRGCVALGS 165
           FE + +P  VS NAIVA    +    +A+  F   +   G+ P+ VT +T++  C +  +
Sbjct: 262 FERMPHPNTVSWNAIVAACTQHGCCVEALWYFQRMQLQGGITPDKVTFITILNACSSPAT 321

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
               EL+H   ++ G    + V N ++ MYS    +D A   F  M  +D ISW  ++  
Sbjct: 322 LTFGELLHECILQCGYDTHLIVGNCIMTMYSSCGRIDNAAAFFSTMVERDAISWNTIISG 381

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
                +  +A+ +FR M    I  D    +++I   A    ++  K L   +V  G++ +
Sbjct: 382 HAQAGFCDEAVHLFRRMLAEGITPDKFTFISIIDGTA---RMQEAKILSELMVESGVELD 438

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           + L +++I M+S+ G++  +RS+F+ + ++ +V WT+IIS YVQ+G + +AL     MR 
Sbjct: 439 VFLVSALINMHSRYGNVREARSLFDDMKDRDIVMWTSIISSYVQHGSSDDALGCTRLMRL 498

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
           E     D  TLV+ L A   L AL     +H  A E GF    +V N LI+ Y+KCG ++
Sbjct: 499 EGLMGND-FTLVTALNACASLTALSEGKLIHAHAIERGFAASPAVGNALINMYAKCGCLE 557

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            A  VF + G  +++VSWNTI   Y        AL L+ +M   G   D  +++++LN C
Sbjct: 558 EADRVFHQCG--KNLVSWNTIAAAYVQRDKWREALQLFQEMQLEGLKADKVSFVTVLNGC 615

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI 525
             A   ++G  I N ++ E  ++        ++++   +  L +AS +  + +E      
Sbjct: 616 SSA---SEGRKIHNILL-ETGMESDHIVSTALLNMYTASKSLDEASRIFSR-MEFRDIVS 670

Query: 526 WRALLSGCVLHVGRFQDAEALRSGSQKKGII--KIPGISFLNSTS 568
           W A+++G   H G  ++A  +    Q +G+   KI  ++ LN+ S
Sbjct: 671 WNAMIAGKAEH-GLSREAIQMFQRMQLEGVAPDKISFVTVLNAFS 714



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 149/576 (25%), Positives = 280/576 (48%), Gaps = 37/576 (6%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTM 74
           Y K G +++A ++F  +   + VSW+ ++  ++ +G  +++ + F  M L GL P+  T 
Sbjct: 47  YGKCGCVEDAVSVFQSLDHPSQVSWNSLLAAFARDGQFQQAFQIFQRMKLQGLAPDRITF 106

Query: 75  VGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFEGLKN 112
           V VL   + + +L   + +HG +++ GLE +                      +F+ L  
Sbjct: 107 VTVLDGCSAIGDLSRGKLLHGFVLEAGLERNVMVGTSLIKMYGKCGCVEDARRVFDKLAL 166

Query: 113 PYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELI 172
             +VS  +++  ++ +    +A+ LF+  R SG++PN +T  T I  C  + S A  +LI
Sbjct: 167 QDVVSWTSMIMTYVQHDRCVEALELFHRMRPSGVLPNRITYATAISACAHVESMADGKLI 226

Query: 173 HGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYA 232
           H   ++ G   DV V+ ++++MY     L+ A ++F  M   + +SW  ++         
Sbjct: 227 HSQVLEDGFESDVVVSCAIVNMYGKCGSLEDAREVFERMPHPNTVSWNAIVAACTQHGCC 286

Query: 233 GDALKIFREMR-KSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
            +AL  F+ M+ +  I  D V  + +++  +    L  G+ LH  ++  G  + L + N 
Sbjct: 287 VEALWYFQRMQLQGGITPDKVTFITILNACSSPATLTFGELLHECILQCGYDTHLIVGNC 346

Query: 292 IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
           I+ MYS CG +D++ + F+ + E+  +SW  IISG+ Q G   EA++ F +M  E   + 
Sbjct: 347 IMTMYSSCGRIDNAAAFFSTMVERDAISWNTIISGHAQAGFCDEAVHLFRRMLAEGI-TP 405

Query: 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVF 411
           D  T +SI+  +  +   +I   L  +  E+G      + + LI+ +S+ GNV  A  +F
Sbjct: 406 DKFTFISIIDGTARMQEAKI---LSELMVESGVELDVFLVSALINMHSRYGNVREARSLF 462

Query: 412 EEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLT 471
           ++M   RD+V W +II  Y  +G  + AL     M   G + +  T ++ LNAC      
Sbjct: 463 DDMKD-RDIVMWTSIISSYVQHGSSDDALGCTRLMRLEGLMGNDFTLVTALNACASLTAL 521

Query: 472 NDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI--WRAL 529
           ++G +I    IE      S      ++++ A+ GCL +A     ++    G N+  W  +
Sbjct: 522 SEGKLIHAHAIERG-FAASPAVGNALINMYAKCGCLEEAD----RVFHQCGKNLVSWNTI 576

Query: 530 LSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFLN 565
            +  V    ++++A  L    Q +G +K   +SF+ 
Sbjct: 577 AAAYV-QRDKWREALQLFQEMQLEG-LKADKVSFVT 610



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 126/483 (26%), Positives = 235/483 (48%), Gaps = 54/483 (11%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  S L++ + + G ++EA +LFD++ ++++V W+ +I  Y  +G  + ++     M
Sbjct: 437 LDVFLVSALINMHSRYGNVREARSLFDDMKDRDIVMWTSIISSYVQHGSSDDALGCTRLM 496

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPY------ 114
            L GL+ N FT+V  L A A L  L   + IH   ++ G  +    G  L N Y      
Sbjct: 497 RLEGLMGNDFTLVTALNACASLTALSEGKLIHAHAIERGFAASPAVGNALINMYAKCGCL 556

Query: 115 -------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                        LVS N I A ++    +++A+ LF   +  GL  + V+ +TV+ GC 
Sbjct: 557 EEADRVFHQCGKNLVSWNTIAAAYVQRDKWREALQLFQEMQLEGLKADKVSFVTVLNGC- 615

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
              S +    IH + ++ G+  D  V+ ++L+MY+    LD A +IF  ME +D++SW  
Sbjct: 616 --SSASEGRKIHNILLETGMESDHIVSTALLNMYTASKSLDEASRIFSRMEFRDIVSWNA 673

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILG----DLKRGKQLHAQV 277
           M+    +   + +A+++F+ M+   +  D ++ + ++  NA  G     LK+ + +   +
Sbjct: 674 MIAGKAEHGLSREAIQMFQRMQLEGVAPDKISFVTVL--NAFSGSSPSSLKQARLVEKLI 731

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
              G +++  + N+I++M+ + G L  +R  F +I E+   SW  I++ + Q+G   +AL
Sbjct: 732 SDQGYETDTIVGNAIVSMFGRSGRLAEARRAFERIRERDAASWNVIVTAHAQHGEVEQAL 791

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV------- 390
             F +M+QE +   DSITLVS+L+A             HG   E G+  + S+       
Sbjct: 792 KLFRRMQQESSRP-DSITLVSVLSACS-----------HGGLIEEGYHHFTSMGREFGIA 839

Query: 391 -----QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHK 445
                  C++   ++ G +D A  +  +M      V W T++    V G  + A  +  +
Sbjct: 840 GSQEHYGCVVDLLARAGRLDQAEELLRKMPVPASYVLWMTLLSACKVQGDEKRAKRVGER 899

Query: 446 MTE 448
           + E
Sbjct: 900 VME 902



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 99/386 (25%), Positives = 187/386 (48%), Gaps = 13/386 (3%)

Query: 152 TMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM 211
           T L ++  C    + A    +H          D  V N+ + MY     ++ A+ +F+ +
Sbjct: 4   TFLALLGLCAKKSAIAEGRFVHSRVEASEFRRDDLVQNATIHMYGKCGCVEDAVSVFQSL 63

Query: 212 ECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGK 271
           +    +SW  ++  F        A +IF+ M+   +  D +  + ++   + +GDL RGK
Sbjct: 64  DHPSQVSWNSLLAAFARDGQFQQAFQIFQRMKLQGLAPDRITFVTVLDGCSAIGDLSRGK 123

Query: 272 QLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNG 331
            LH  V+  GL+  + +  S+I MY KCG ++ +R VF+++  + +VSWT++I  YVQ+ 
Sbjct: 124 LLHGFVLEAGLERNVMVGTSLIKMYGKCGCVEDARRVFDKLALQDVVSWTSMIMTYVQHD 183

Query: 332 CAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ 391
              EAL  F +MR       + IT  + ++A   + ++     +H    E GF     V 
Sbjct: 184 RCVEALELFHRMRPSGVLP-NRITYATAISACAHVESMADGKLIHSQVLEDGFESDVVVS 242

Query: 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMT-ETG 450
             +++ Y KCG+++ A  VFE M    + VSWN I+     +G    AL  + +M  + G
Sbjct: 243 CAIVNMYGKCGSLEDAREVFERMPH-PNTVSWNAIVAACTQHGCCVEALWYFQRMQLQGG 301

Query: 451 EVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY----GCVVDLLARAGC 506
             PD  T+++ILNAC     ++   + F +++ E  ++   + +     C++ + +  G 
Sbjct: 302 ITPDKVTFITILNAC-----SSPATLTFGELLHECILQCGYDTHLIVGNCIMTMYSSCGR 356

Query: 507 LSDASGLAGKLLEGMGPNIWRALLSG 532
           + +A+     ++E    + W  ++SG
Sbjct: 357 IDNAAAFFSTMVERDAIS-WNTIISG 381


>gi|15232500|ref|NP_188131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546753|sp|P0C898.1|PP232_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15130
 gi|332642102|gb|AEE75623.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 689

 Score =  251 bits (641), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 149/435 (34%), Positives = 240/435 (55%), Gaps = 6/435 (1%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F+ +    +VS +A+++G + N   + ++ LF+     G+ PN  T  T ++ C  L +
Sbjct: 63  VFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNA 122

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
                 IHG  +K+G  + V V NS++DMYS    ++ A ++FR +  + +ISW  M+  
Sbjct: 123 LEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAG 182

Query: 226 FVDFEYAGDALKIFREMRKSRII--CDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
           FV   Y   AL  F  M+++ I    D   L +L+   +  G +  GKQ+H  +V  G  
Sbjct: 183 FVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFH 242

Query: 284 --SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
             S   ++ S++ +Y KCG L S+R  F+QI EK+++SW+++I GY Q G   EA+  F 
Sbjct: 243 CPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFK 302

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           ++ QE    +DS  L SI+    + A L    Q+  +A +       SV N ++  Y KC
Sbjct: 303 RL-QELNSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKC 361

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G VD A   F EM  L+DV+SW  +I GYG +G G+ ++ ++++M      PD   YL++
Sbjct: 362 GLVDEAEKCFAEMQ-LKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAV 420

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L+AC H+G+  +G  +F++++E + +KP  EHY CVVDLL RAG L +A  L   +    
Sbjct: 421 LSACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKP 480

Query: 522 GPNIWRALLSGCVLH 536
              IW+ LLS C +H
Sbjct: 481 NVGIWQTLLSLCRVH 495



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 134/506 (26%), Positives = 242/506 (47%), Gaps = 53/506 (10%)

Query: 7   NSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSG 66
            S+ L+  Y K  +   A  +FD +PE+NVVSWS ++ G+ +NG  + S+  FS M   G
Sbjct: 43  TSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQG 102

Query: 67  LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE----------------------S 104
           + PN FT    L A   L  LE    IHG  +K G E                       
Sbjct: 103 IYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAE 162

Query: 105 DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLV--PNAVTMLTVIRGCVA 162
            +F  + +  L+S NA++AGF++     +A+  F   + + +   P+  T+ ++++ C +
Sbjct: 163 KVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSS 222

Query: 163 LGSRALCELIHGLTIKLGLILDVS--VNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
            G     + IHG  ++ G     S  +  S++D+Y     L +A + F +++ K +ISW+
Sbjct: 223 TGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWS 282

Query: 221 RM-MGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
            + +G   + E+  +A+ +F+ +++     D+ AL ++I V A    L++GKQ+ A  V 
Sbjct: 283 SLILGYAQEGEFV-EAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQALAVK 341

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
                E  + NS++ MY KCG +D +   F ++  K ++SWT +I+GY ++G  ++++  
Sbjct: 342 LPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRI 401

Query: 340 FIKMRQE--KTDSVDSITLVSILTASGELAALE----ICLQLHGIAFEAGFPRYRSVQNC 393
           F +M +   + D V  + ++S  + SG +   E      L+ HGI      PR      C
Sbjct: 402 FYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIK-----PRVEHYA-C 455

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV- 452
           ++    + G +  A  + + M    +V  W T++    V  HG+  L       E G++ 
Sbjct: 456 VVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRV--HGDIELG-----KEVGKIL 508

Query: 453 -----PDSSTYLSILNACGHAGLTND 473
                 + + Y+ + N  G AG  N+
Sbjct: 509 LRIDAKNPANYVMMSNLYGQAGYWNE 534



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 168/334 (50%), Gaps = 7/334 (2%)

Query: 146 LVPNA-VTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAA 204
           ++PN    +++++R C   G       +H   +K G  L++  +N ++DMY    +   A
Sbjct: 1   MIPNQRQNLVSILRVCTRKGLSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMA 60

Query: 205 IQIFREMECKDVISWTRMM-GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAI 263
            ++F  M  ++V+SW+ +M G  ++ +  G +L +F EM +  I  +       +    +
Sbjct: 61  YKVFDSMPERNVVSWSALMSGHVLNGDLKG-SLSLFSEMGRQGIYPNEFTFSTNLKACGL 119

Query: 264 LGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAI 323
           L  L++G Q+H   +  G +  + + NS++ MYSKCG ++ +  VF +I ++SL+SW A+
Sbjct: 120 LNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAM 179

Query: 324 ISGYVQNGCAREALNQFIKMRQEK-TDSVDSITLVSILTASGELAALEICLQLHGIAFEA 382
           I+G+V  G   +AL+ F  M++    +  D  TL S+L A      +    Q+HG    +
Sbjct: 180 IAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRS 239

Query: 383 GF--PRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETAL 440
           GF  P   ++   L+  Y KCG +  A   F+++   + ++SW+++I GY   G    A+
Sbjct: 240 GFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIK-EKTMISWSSLILGYAQEGEFVEAM 298

Query: 441 ALYHKMTETGEVPDSSTYLSILNACGHAGLTNDG 474
            L+ ++ E     DS    SI+       L   G
Sbjct: 299 GLFKRLQELNSQIDSFALSSIIGVFADFALLRQG 332



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 93/294 (31%), Positives = 146/294 (49%), Gaps = 12/294 (4%)

Query: 254 LLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT 313
           L++++ V    G   +G Q+H  ++  G    L  SN +I MY KC +   +  VF+ + 
Sbjct: 9   LVSILRVCTRKGLSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMP 68

Query: 314 EKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICL 373
           E+++VSW+A++SG+V NG  + +L+ F +M ++     +  T  + L A G L ALE  L
Sbjct: 69  ERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYP-NEFTFSTNLKACGLLNALEKGL 127

Query: 374 QLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVN 433
           Q+HG   + GF     V N L+  YSKCG ++ A  VF  +   R ++SWN +I G+   
Sbjct: 128 QIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRI-VDRSLISWNAMIAGFVHA 186

Query: 434 GHGETALALYHKMTETG--EVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQ 491
           G+G  AL  +  M E    E PD  T  S+L AC   G+   G  I   ++      PS 
Sbjct: 187 GYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSS 246

Query: 492 EH-YGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAE 544
               G +VDL  + G L  A     ++ E       + ++S   L +G  Q+ E
Sbjct: 247 ATITGSLVDLYVKCGYLFSARKAFDQIKE-------KTMISWSSLILGYAQEGE 293


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  251 bits (641), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 137/421 (32%), Positives = 240/421 (57%), Gaps = 5/421 (1%)

Query: 118 CNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTI 177
           CN ++  + N     +A+ L+ + +  G+  N  T   V++ C +       E++HG  +
Sbjct: 100 CNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAVFGEVVHGQVV 159

Query: 178 KLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALK 237
           + G   D+ V  +++DMY+   ++  A ++F  M  +DV+ WT M+ L+   E    AL 
Sbjct: 160 RTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALM 219

Query: 238 IFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYS 297
           +FR+M++   + D +  +++ S    LGD +    +H   VL G   ++ + NSI+ MY+
Sbjct: 220 LFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVLNGFIGDVSVGNSIVGMYA 279

Query: 298 KCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLV 357
           KCG+++ +R VF+++ E++ +SW +++SGY QNG   +AL+ F +M+  + D  + +T +
Sbjct: 280 KCGNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDP-NPVTAL 338

Query: 358 SILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFE--EMG 415
            +++A   L +  +  +LH     +      +++N ++  Y KCG++D A  +F   E+G
Sbjct: 339 IMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELG 398

Query: 416 FLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGL 475
             RDV SWN +I GYGV+GHG+ AL L+ +M   G  P+  T+ SIL+AC HAGL ++G 
Sbjct: 399 -ERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGR 457

Query: 476 VIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVL 535
             F  M + + V+P  +HY C+VD+L RAG L++A  L  K+       +W ALL  C +
Sbjct: 458 KCFADMTKLS-VRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRI 516

Query: 536 H 536
           H
Sbjct: 517 H 517



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 109/390 (27%), Positives = 185/390 (47%), Gaps = 33/390 (8%)

Query: 5   PYNSSKLLSNYFKSGKIKEAENLFDE--------IPEKNVVSWSIVIHGYSINGFHEKSM 56
           P+  ++L+  Y K G +  A  LFD             N    + ++  Y+  G   +++
Sbjct: 58  PHFLARLIILYSKLGDLHSARTLFDHRHHHHHGHTQAPNSFLCNTMLRAYANAGRSYEAI 117

Query: 57  KAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY 114
             + +M   G+  N+FT   VL   A          +HG +V+ G  SDLF    L + Y
Sbjct: 118 DLYIYMQRMGVGVNNFTYPFVLKVCASELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMY 177

Query: 115 --------------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTML 154
                               +V   A++  +   +   +A++LF   +  G + + +T +
Sbjct: 178 AKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAI 237

Query: 155 TVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
           +V      LG   +   +HG  +  G I DVSV NS++ MY+   +++ A  +F  ME +
Sbjct: 238 SVASAVGQLGDGRMAISVHGYAVLNGFIGDVSVGNSIVGMYAKCGNVERARLVFDRMEER 297

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
           + ISW  M+  +       DAL +F +M+ S    + V  L ++S  + LG    G++LH
Sbjct: 298 NGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLH 357

Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFN--QITEKSLVSWTAIISGYVQNGC 332
             V+   +  +  L N+I+ MY KCGDLD++  +FN  ++ E+ + SW  +ISGY  +G 
Sbjct: 358 NFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGH 417

Query: 333 AREALNQFIKMRQEKTDSVDSITLVSILTA 362
            +EAL  F +M+ E  +  D IT  SIL+A
Sbjct: 418 GKEALELFSRMQVEGVEPND-ITFTSILSA 446



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/401 (23%), Positives = 181/401 (45%), Gaps = 34/401 (8%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L+  Y K G+I +A  +FD +  ++VV W+ +I  Y       K++  F  M 
Sbjct: 166 DLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQ 225

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------- 106
             G L +  T + V  A   L +  +A S+HG  V  G   D+                 
Sbjct: 226 EEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVLNGFIGDVSVGNSIVGMYAKCGNVE 285

Query: 107 -----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                F+ ++    +S N++++G+  N     A+ LFN  + S   PN VT L ++  C 
Sbjct: 286 RARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACS 345

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC--KDVISW 219
            LGS+ L   +H   I   + +D ++ N+++DMY    DLD A+++F   E   +DV SW
Sbjct: 346 YLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSW 405

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
             ++  +    +  +AL++F  M+   +  + +   +++S  +  G +  G++  A +  
Sbjct: 406 NVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMTK 465

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK-SLVSWTAI-----ISGYVQNGCA 333
             ++ E++    ++ M  + G L+ +  +  +I  + S   W A+     I G  + G  
Sbjct: 466 LSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTELG-- 523

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQ 374
             A N   ++  E T     + + +I  AS +   +E+  Q
Sbjct: 524 EIAANNLFQLEPEHTGYY--VLMSNIYAASNKWKEVEMVRQ 562


>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 705

 Score =  251 bits (641), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 177/635 (27%), Positives = 296/635 (46%), Gaps = 125/635 (19%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
            ++L+  Y K G  ++A  +FD +P++N  S++ V+                S +   G 
Sbjct: 57  QNRLVDAYGKCGYFEDARKVFDRMPQRNTFSYNAVL----------------SVLTKFGK 100

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFIN 127
           L  +F                                ++F+ +  P   S NA+V+GF  
Sbjct: 101 LDEAF--------------------------------NVFKSMPEPDQCSWNAMVSGFAQ 128

Query: 128 NKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSV 187
           +  F++A+  F        V N  +  + +  C  L    +   IH L  K   +LDV +
Sbjct: 129 HDRFEEALRFFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYM 188

Query: 188 NNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRI 247
            ++++DMYS    +  A + F  M  ++++SW  ++  +     AG AL++F  M  + +
Sbjct: 189 GSALVDMYSKCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGV 248

Query: 248 ICDTVALLNLISVNAILGDLKRGKQLHAQVV-LGGLQSELRLSNSIIAMYSKCGDLDSSR 306
             D + L +++S  A    ++ G Q+HA+VV     +++L L N+++ MY+KC  ++ +R
Sbjct: 249 EPDEITLASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEAR 308

Query: 307 SVFNQIT-------------------------------EKSLVSWTAIISGYVQNGCARE 335
            VF+++                                EK++VSW A+I+GY QNG   E
Sbjct: 309 LVFDRMPLRNVVSETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEE 368

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLH------GIAFEAGFPRYRS 389
           A+  F+ +++E        T  ++L A   LA L++  Q H      G  F++G      
Sbjct: 369 AVRLFLLLKRESIWPT-HYTFGNLLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIF 427

Query: 390 VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
           V N LI  Y KCG V+   +VFE M   RDVVSWN +I GY  NG+G  AL ++ KM  +
Sbjct: 428 VGNSLIDMYMKCGMVEDGCLVFERM-VERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVS 486

Query: 450 GEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSD 509
           G+ PD  T + +L+AC HAGL  +G   F+ M  E  + P ++H+ C+VDLL RAGCL +
Sbjct: 487 GQKPDHVTMIGVLSACSHAGLVEEGRRYFHSMRTELGLAPMKDHFTCMVDLLGRAGCLDE 546

Query: 510 ASGLAGKLLEGMGPN--IWRALLSGCVLH------------------------------- 536
           A+ L   +   M P+  +W +LL+ C +H                               
Sbjct: 547 ANDLIQTM--PMQPDNVVWGSLLAACKVHGNIELGKYVAEKLMEIDPLNSGPYVLLSNMY 604

Query: 537 --VGRFQDAEALRSGSQKKGIIKIPGISFLNSTSR 569
             +GR++D   +R   +++G+IK PG S++   SR
Sbjct: 605 AELGRWKDVVRVRKQMRQRGVIKQPGCSWIEIQSR 639



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 129/549 (23%), Positives = 243/549 (44%), Gaps = 63/549 (11%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  + ++ + +LS   K GK+ EA N+F  +PE +  SW+ ++ G++ +   E++++ F 
Sbjct: 81  PQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFV 140

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL-------------- 106
            M     + N ++    L A AGL +L +   IH L+ K     D+              
Sbjct: 141 DMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCG 200

Query: 107 --------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                   F+G+    +VS N+++  +  N    +A+ +F     +G+ P+ +T+ +V+ 
Sbjct: 201 VVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVS 260

Query: 159 GCVALGSRALCELIHGLTIKLGLIL-DVSVNNSVLDMYSCLMDLDAAIQIFREMEC---- 213
            C +  +      IH   +K      D+ + N+++DMY+    ++ A  +F  M      
Sbjct: 261 ACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVV 320

Query: 214 ---------------------------KDVISWTRMMGLFVDFEYAGDALKIFREMRKSR 246
                                      K+V+SW  ++  +       +A+++F  +++  
Sbjct: 321 SETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRES 380

Query: 247 IICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL------QSELRLSNSIIAMYSKCG 300
           I        NL++  A L DLK G+Q H Q++  G       +S++ + NS+I MY KCG
Sbjct: 381 IWPTHYTFGNLLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCG 440

Query: 301 DLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSIL 360
            ++    VF ++ E+ +VSW A+I GY QNG    AL  F KM        D +T++ +L
Sbjct: 441 MVEDGCLVFERMVERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSGQKP-DHVTMIGVL 499

Query: 361 TASGELAALEICLQ-LHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRD 419
           +A      +E   +  H +  E G    +    C++    + G +D A  + + M    D
Sbjct: 500 SACSHAGLVEEGRRYFHSMRTELGLAPMKDHFTCMVDLLGRAGCLDEANDLIQTMPMQPD 559

Query: 420 VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFN 479
            V W +++    V+G+ E    +  K+ E   + +S  Y+ + N     G   D + +  
Sbjct: 560 NVVWGSLLAACKVHGNIELGKYVAEKLMEIDPL-NSGPYVLLSNMYAELGRWKDVVRVRK 618

Query: 480 QMIEENKVK 488
           QM +   +K
Sbjct: 619 QMRQRGVIK 627



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 130/272 (47%), Gaps = 33/272 (12%)

Query: 270 GKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLV----------- 318
            +++HA+++     SE+ + N ++  Y KCG  + +R VF+++ +++             
Sbjct: 38  ARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVFDRMPQRNTFSYNAVLSVLTK 97

Query: 319 --------------------SWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVS 358
                               SW A++SG+ Q+    EAL  F+ M  E    ++  +  S
Sbjct: 98  FGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFVDMHSEDF-VLNEYSFGS 156

Query: 359 ILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLR 418
            L+A   L  L + +Q+H +  ++ +     + + L+  YSKCG V  A   F+ M  +R
Sbjct: 157 ALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAFDGMA-VR 215

Query: 419 DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIF 478
           ++VSWN++I  Y  NG    AL ++  M + G  PD  T  S+++AC       +GL I 
Sbjct: 216 NIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQIH 275

Query: 479 NQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
            ++++ +K +        +VD+ A+   +++A
Sbjct: 276 ARVVKRDKYRNDLVLGNALVDMYAKCRRVNEA 307


>gi|11994503|dbj|BAB02568.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1161

 Score =  251 bits (641), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 151/437 (34%), Positives = 243/437 (55%), Gaps = 10/437 (2%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F+ +    +VS +A+++G + N   + ++ LF+     G+ PN  T  T ++ C  L +
Sbjct: 434 VFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNA 493

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
                 IHG  +K+G  + V V NS++DMYS    ++ A ++FR +  + +ISW  M+  
Sbjct: 494 LEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAG 553

Query: 226 FVDFEYAGDALKIFREMRKSRII--CDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
           FV   Y   AL  F  M+++ I    D   L +L+   +  G +  GKQ+H  +V  G  
Sbjct: 554 FVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFH 613

Query: 284 --SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
             S   ++ S++ +Y KCG L S+R  F+QI EK+++SW+++I GY Q G   EA+  F 
Sbjct: 614 CPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFK 673

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           ++ QE    +DS  L SI+    + A L    Q+  +A +       SV N ++  Y KC
Sbjct: 674 RL-QELNSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKC 732

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G VD A   F EM  L+DV+SW  +I GYG +G G+ ++ ++++M      PD   YL++
Sbjct: 733 GLVDEAEKCFAEMQ-LKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAV 791

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L+AC H+G+  +G  +F++++E + +KP  EHY CVVDLL RAG L +A  L   +   +
Sbjct: 792 LSACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTM--PI 849

Query: 522 GPN--IWRALLSGCVLH 536
            PN  IW+ LLS C +H
Sbjct: 850 KPNVGIWQTLLSLCRVH 866



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 133/506 (26%), Positives = 244/506 (48%), Gaps = 41/506 (8%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P ++   S+ L+  Y K  +   A  +FD +PE+NVVSWS ++ G+ +NG  + S+  FS
Sbjct: 408 PWLNLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFS 467

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE----------------- 103
            M   G+ PN FT    L A   L  LE    IHG  +K G E                 
Sbjct: 468 EMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCG 527

Query: 104 -----SDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLV--PNAVTMLTV 156
                  +F  + +  L+S NA++AGF++     +A+  F   + + +   P+  T+ ++
Sbjct: 528 RINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSL 587

Query: 157 IRGCVALGSRALCELIHGLTIKLGLILDVS--VNNSVLDMYSCLMDLDAAIQIFREMECK 214
           ++ C + G     + IHG  ++ G     S  +  S++D+Y     L +A + F +++ K
Sbjct: 588 LKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEK 647

Query: 215 DVISWTRM-MGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQL 273
            +ISW+ + +G   + E+  +A+ +F+ +++     D+ AL ++I V A    L++GKQ+
Sbjct: 648 TMISWSSLILGYAQEGEFV-EAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQM 706

Query: 274 HAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA 333
            A  V      E  + NS++ MY KCG +D +   F ++  K ++SWT +I+GY ++G  
Sbjct: 707 QALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLG 766

Query: 334 REALNQFIKMRQE--KTDSVDSITLVSILTASGELAALE----ICLQLHGIAFEAGFPRY 387
           ++++  F +M +   + D V  + ++S  + SG +   E      L+ HGI      PR 
Sbjct: 767 KKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIK-----PRV 821

Query: 388 RSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMT 447
                C++    + G +  A  + + M    +V  W T++    V+G  E    +  K+ 
Sbjct: 822 EHYA-CVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRVHGDIELGKEV-GKIL 879

Query: 448 ETGEVPDSSTYLSILNACGHAGLTND 473
              +  + + Y+ + N  G AG  N+
Sbjct: 880 LRIDAKNPANYVMMSNLYGQAGYWNE 905


>gi|357128207|ref|XP_003565766.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Brachypodium distachyon]
          Length = 734

 Score =  251 bits (641), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 170/558 (30%), Positives = 288/558 (51%), Gaps = 38/558 (6%)

Query: 8   SSKLLSNY--FKSGKIKEAENLFDEIPE--KNVVSWSIVIHGYSINGFHEKSMKAFSHM- 62
           S+ L++ Y  F    +  A  +F +IP   ++V SW+ +++  S    H + + A SH  
Sbjct: 50  SNSLITFYSSFPRLFLPAAFAVFADIPAAARDVASWNSLLNPLS----HHRPLAALSHFR 105

Query: 63  -MLSG--LLPNSFT------------------MVGVLVA--AAGLQNLELARSIHGLMVK 99
            MLS   +LP+  +                  +V  L     +   N+ ++ ++  +  K
Sbjct: 106 SMLSSSTILPSPHSFAAAFTAAARAHSASAGAVVHALACKLPSASSNVFVSTALLNMYCK 165

Query: 100 FGLESD---LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGS-GLVPNAVTMLT 155
            GL  D   +F+ + +   VS  A+VAG+   K  Q+A  LF    G   L  N      
Sbjct: 166 LGLIPDAQLVFDEMPHRNEVSWAAMVAGYAARKCSQEAFELFRQMLGECPLHKNEFVATA 225

Query: 156 VIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKD 215
           V+          +   +HGL +K G++  VSV NS++ MY+    +DAA  +F   + ++
Sbjct: 226 VLSAISVPLGLPMGVQVHGLVVKDGMVGFVSVENSLVTMYAKAGCMDAAFHVFESSKERN 285

Query: 216 VISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
            I+W+ M+  +     A  A+++F +M  +        L+ +++  + +G L  GKQ H 
Sbjct: 286 SITWSAMITGYSQNGNAESAVRMFSQMHAAGFPPTEFTLVGVLNACSDVGTLMEGKQAHG 345

Query: 276 QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
            +V  G + ++ + ++++ MY+KCG +  ++  FNQ +E  +V WTA+++G+VQNG   +
Sbjct: 346 LMVKLGFEVQVYVKSALVDMYAKCGCIGDAKECFNQFSELDIVLWTAMVTGHVQNGEFEQ 405

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLI 395
           AL  + +M +E     +++T+ S+L A   LAALE   QLH    + GF    SV + L 
Sbjct: 406 ALMLYARMDKEGVFP-NTLTITSLLRACAGLAALEPGKQLHTQILKFGFGLGASVGSALS 464

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
           + YSKCGN++   +VF  M   RDV++WN+II G+  NG G  A+ L+ +M   G  PD 
Sbjct: 465 TMYSKCGNLEDGMVVFRRMPH-RDVIAWNSIISGFSQNGRGNDAINLFEEMKLEGTAPDP 523

Query: 456 STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAG 515
            T++++L AC H GL + G   F  MI++  + P  +HY C+VD+L+RAG LS+A     
Sbjct: 524 VTFINVLCACSHMGLVDRGWTYFRSMIKDYGLTPRLDHYACMVDILSRAGMLSEAKDFIE 583

Query: 516 KLLEGMGPNIWRALLSGC 533
            +    G  +WR +L  C
Sbjct: 584 SITIDHGTCLWRIVLGAC 601



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 108/396 (27%), Positives = 191/396 (48%), Gaps = 15/396 (3%)

Query: 170 ELIHGLTIKLGLILDVSVNNSVLDMYSCL--MDLDAAIQIFREME--CKDVISWTRMMGL 225
           E +H   +K G      V+NS++  YS    + L AA  +F ++    +DV SW  ++  
Sbjct: 32  EALHAWALKSGSSSHAPVSNSLITFYSSFPRLFLPAAFAVFADIPAAARDVASWNSLLNP 91

Query: 226 FVDFEYAGDALKIFREM-RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV-LGGLQ 283
                    AL  FR M   S I+    +     +  A       G  +HA    L    
Sbjct: 92  LSHHRPLA-ALSHFRSMLSSSTILPSPHSFAAAFTAAARAHSASAGAVVHALACKLPSAS 150

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
           S + +S +++ MY K G +  ++ VF+++  ++ VSW A+++GY    C++EA   F +M
Sbjct: 151 SNVFVSTALLNMYCKLGLIPDAQLVFDEMPHRNEVSWAAMVAGYAARKCSQEAFELFRQM 210

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
             E     +     ++L+A      L + +Q+HG+  + G   + SV+N L++ Y+K G 
Sbjct: 211 LGECPLHKNEFVATAVLSAISVPLGLPMGVQVHGLVVKDGMVGFVSVENSLVTMYAKAGC 270

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           +D A+ VFE     R+ ++W+ +I GY  NG+ E+A+ ++ +M   G  P   T + +LN
Sbjct: 271 MDAAFHVFESSK-ERNSITWSAMITGYSQNGNAESAVRMFSQMHAAGFPPTEFTLVGVLN 329

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHY--GCVVDLLARAGCLSDASGLAGKLLEGM 521
           AC   G   +G      M+   K+    + Y    +VD+ A+ GC+ DA     +  E +
Sbjct: 330 ACSDVGTLMEGKQAHGLMV---KLGFEVQVYVKSALVDMYAKCGCIGDAKECFNQFSE-L 385

Query: 522 GPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIK 557
              +W A+++G V + G F+ A  L +   K+G+  
Sbjct: 386 DIVLWTAMVTGHVQN-GEFEQALMLYARMDKEGVFP 420



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 105/218 (48%), Gaps = 28/218 (12%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y  S L+  Y K G I +A+  F++  E ++V W+ ++ G+  NG  E+++  ++ M   
Sbjct: 357 YVKSALVDMYAKCGCIGDAKECFNQFSELDIVLWTAMVTGHVQNGEFEQALMLYARMDKE 416

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG--------------------LESD 105
           G+ PN+ T+  +L A AGL  LE  + +H  ++KFG                    LE  
Sbjct: 417 GVFPNTLTITSLLRACAGLAALEPGKQLHTQILKFGFGLGASVGSALSTMYSKCGNLEDG 476

Query: 106 L--FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
           +  F  + +  +++ N+I++GF  N     A+ LF   +  G  P+ VT + V+  C  +
Sbjct: 477 MVVFRRMPHRDVIAWNSIISGFSQNGRGNDAINLFEEMKLEGTAPDPVTFINVLCACSHM 536

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDL 201
           G      +  G T    +I D  +    LD Y+C++D+
Sbjct: 537 GL-----VDRGWTYFRSMIKDYGLTPR-LDHYACMVDI 568



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 123/280 (43%), Gaps = 28/280 (10%)

Query: 268 KRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGD--LDSSRSVFNQI--TEKSLVSWTAI 323
           + G+ LHA  +  G  S   +SNS+I  YS      L ++ +VF  I    + + SW ++
Sbjct: 29  RDGEALHAWALKSGSSSHAPVSNSLITFYSSFPRLFLPAAFAVFADIPAAARDVASWNSL 88

Query: 324 ISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG 383
           ++    +     AL+ F  M    T      +  +  TA+    +      +H +A +  
Sbjct: 89  LNPLSHHR-PLAALSHFRSMLSSSTILPSPHSFAAAFTAAARAHSASAGAVVHALACK-- 145

Query: 384 FPRYRS---VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETAL 440
            P   S   V   L++ Y K G +  A +VF+EM   R+ VSW  ++ GY      + A 
Sbjct: 146 LPSASSNVFVSTALLNMYCKLGLIPDAQLVFDEMPH-RNEVSWAAMVAGYAARKCSQEAF 204

Query: 441 ALYHKMTETGEVP---DSSTYLSILNACG-----HAGLTNDGLVIFNQMIEENKVKPSQE 492
            L+ +M   GE P   +     ++L+A         G+   GLV+ + M+    V+ S  
Sbjct: 205 ELFRQM--LGECPLHKNEFVATAVLSAISVPLGLPMGVQVHGLVVKDGMVGFVSVENS-- 260

Query: 493 HYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSG 532
               +V + A+AGC+ DA+    +  +      W A+++G
Sbjct: 261 ----LVTMYAKAGCM-DAAFHVFESSKERNSITWSAMITG 295


>gi|3297823|emb|CAA19881.1| putative protein [Arabidopsis thaliana]
 gi|7270348|emb|CAB80116.1| putative protein [Arabidopsis thaliana]
          Length = 844

 Score =  251 bits (641), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 174/598 (29%), Positives = 289/598 (48%), Gaps = 80/598 (13%)

Query: 22  KEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS-GLLPNSFTMVGVLVA 80
           K   + FD I  ++V +W+++I GY   G   + ++ FS  MLS GL P+  T   VL A
Sbjct: 36  KSKMHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKA 95

Query: 81  AAGLQNLELARSIHGLMVKFGLESD----------------------LFEGLKNPYLVSC 118
              + +      IH L +KFG   D                      LF+ +    + S 
Sbjct: 96  CRTVID---GNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSW 152

Query: 119 NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIK 178
           NA+++G+  +   ++A+ L N  R      ++VT+++++  C   G       IH  +IK
Sbjct: 153 NAMISGYCQSGNAKEALTLSNGLRAM----DSVTVVSLLSACTEAGDFNRGVTIHSYSIK 208

Query: 179 LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKI 238
            GL  ++               L    ++F  M  +D+ISW  ++  +   E    A+ +
Sbjct: 209 HGLESEL---------------LRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISL 253

Query: 239 FREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG-LQSELRLSNSIIAMYS 297
           F+EMR SRI  D + L++L S+ + LGD++  + +    +  G    ++ + N+++ MY+
Sbjct: 254 FQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYA 313

Query: 298 KCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLV 357
           K G +DS+R+VFN +    ++SW  IISGY QNG A EA+  +  M +E   + +  T V
Sbjct: 314 KLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWV 373

Query: 358 SILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFL 417
           S+L A  +  AL   ++LHG   + G      V   L   Y KCG ++ A  +F ++  +
Sbjct: 374 SVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRV 433

Query: 418 RDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVI 477
            + V WNT+I  +G +GHGE A+ L+ +M + G  PD  T++++L+AC H+GL ++G   
Sbjct: 434 -NSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWC 492

Query: 478 FNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH- 536
           F  M  +  + PS +HYGC+VD+  RAG L  A      +      +IW ALLS C +H 
Sbjct: 493 FEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHG 552

Query: 537 --------------------------------VGRFQDAEALRSGSQKKGIIKIPGIS 562
                                            G+++  + +RS +  KG+ K PG S
Sbjct: 553 NVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWS 610



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 112/444 (25%), Positives = 223/444 (50%), Gaps = 19/444 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y ++ L+  Y +   +  A  LFDE+P +++ SW+ +I GY  +G  ++++      +
Sbjct: 117 DVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALT-----L 171

Query: 64  LSGLLP-NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPY-------L 115
            +GL   +S T+V +L A     +     +IH   +K GLES+L    +  +       L
Sbjct: 172 SNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELLRDCQKVFDRMYVRDL 231

Query: 116 VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGL 175
           +S N+I+  +  N+   +A+ LF   R S + P+ +T++++      LG    C  + G 
Sbjct: 232 ISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGF 291

Query: 176 TIKLGLIL-DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGD 234
           T++ G  L D+++ N+V+ MY+ L  +D+A  +F  +   DVISW  ++  +    +A +
Sbjct: 292 TLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASE 351

Query: 235 ALKIFREMRKS-RIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSII 293
           A++++  M +   I  +    ++++   +  G L++G +LH +++  GL  ++ +  S+ 
Sbjct: 352 AIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLA 411

Query: 294 AMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE--KTDSV 351
            MY KCG L+ + S+F QI   + V W  +I+ +  +G   +A+  F +M  E  K D +
Sbjct: 412 DMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHI 471

Query: 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVF 411
             +TL+S  + SG +   + C ++  +  + G         C++  Y + G ++ A    
Sbjct: 472 TFVTLLSACSHSGLVDEGQWCFEM--MQTDYGITPSLKHYGCMVDMYGRAGQLETALKFI 529

Query: 412 EEMGFLRDVVSWNTIIYGYGVNGH 435
           + M    D   W  ++    V+G+
Sbjct: 530 KSMSLQPDASIWGALLSACRVHGN 553



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 45/80 (56%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  + L   Y K G++++A +LF +IP  N V W+ +I  +  +G  EK++  F  M
Sbjct: 402 LDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEM 461

Query: 63  MLSGLLPNSFTMVGVLVAAA 82
           +  G+ P+  T V +L A +
Sbjct: 462 LDEGVKPDHITFVTLLSACS 481


>gi|115458828|ref|NP_001053014.1| Os04g0463800 [Oryza sativa Japonica Group]
 gi|38347057|emb|CAE04357.2| OSJNBa0060P14.4 [Oryza sativa Japonica Group]
 gi|113564585|dbj|BAF14928.1| Os04g0463800 [Oryza sativa Japonica Group]
          Length = 767

 Score =  251 bits (641), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 178/563 (31%), Positives = 289/563 (51%), Gaps = 42/563 (7%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS-- 65
           +S L+  Y + G +++A  LFDE+PE++VV+W+ VI G   NG   + +     M+ S  
Sbjct: 148 ASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAG 207

Query: 66  --GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL---------------ESD--- 105
             G  PNS TM   L A   L  L +   +HG  VK G+               + D   
Sbjct: 208 DGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTE 267

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               LF  L    LVS  +++  +      ++AV LF     SGL P+ V +  ++ G  
Sbjct: 268 DARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAG-- 325

Query: 162 ALGSRALC---ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            LG+ A     +  H   ++      V + N+++ MY+    +D A  +FR +  +D  S
Sbjct: 326 -LGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDS 384

Query: 219 WTRMMGLFVDFEYAGDALKIFREMR---KSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
           W+ M+  +         L+++REM+   K     DT +L+++IS  + LG L+ G+  H 
Sbjct: 385 WSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSAHC 444

Query: 276 QVV--LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA 333
             +  L G  S +  +N++I+MY +CG+ D +R +F  +  K +V+W+A+IS Y   G +
Sbjct: 445 YSIKHLAGENSSV--ANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHS 502

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC 393
           ++AL  + +M  E     +S TLVS++++   LAALE    +H    + G     S+   
Sbjct: 503 KDALLLYDQMLTEGVKP-NSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTA 561

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           L+  Y KCG + +A  +F+ M   RDVV+WN +I GYG++G    AL L+  M      P
Sbjct: 562 LVDMYMKCGQLGIARKMFDSM-LERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKP 620

Query: 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL 513
           +S T+L+IL+AC HAGL + G  +F +M EE  ++P+ +HY C+VDLL ++G L +A  +
Sbjct: 621 NSLTFLAILSACCHAGLVDKGRELFTRM-EEYSLEPNLKHYACMVDLLGKSGHLQEAEDV 679

Query: 514 AGKLLEGMGPNIWRALLSGCVLH 536
              +       IW  LL  C +H
Sbjct: 680 VSAMPIEPDGGIWGTLLGACKMH 702



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 155/595 (26%), Positives = 281/595 (47%), Gaps = 44/595 (7%)

Query: 5   PYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML 64
           P  ++KL+S Y  +G    A   F   P  +   W+ ++           ++ A   M  
Sbjct: 41  PDFAAKLVSAYSSAGLPALAALAFAASPCPDAFLWNSLLRSRHRASDFASTLSAHRRMRA 100

Query: 65  SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL-ESD------------------ 105
           SG  P+ FT   V  AAA L  L +  ++H   V+FGL E D                  
Sbjct: 101 SGARPSRFTAPLVASAAAELGALPVGAAVHAYSVRFGLLEGDGSVAVASSLVYMYARCGS 160

Query: 106 ------LFEGLKNPYLVSCNAIVAGFI-NNKLFQQAVLLFNFFRGSG---LVPNAVTMLT 155
                 LF+ +    +V+  A+++G + N +  +    L    R +G     PN+ TM +
Sbjct: 161 VRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGDGGARPNSRTMES 220

Query: 156 VIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKD 215
            +  C  LG  ++   +HG  +K G+    SV +S+  MY+     + A  +F E+  KD
Sbjct: 221 GLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTEDARILFPELPEKD 280

Query: 216 VISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
           ++SWT ++G +    +A  A+++F  M +S +  D V +  L++       ++ GK  HA
Sbjct: 281 LVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGLGNDAKVRGGKTFHA 340

Query: 276 QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
            +V       + + N++I+MY+KC  +D + +VF  + ++   SW++++  Y + G   +
Sbjct: 341 AIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYCKAGLDLK 400

Query: 336 ALNQFIKMRQEKTDSV--DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC 393
            L  + +M+    D    D+ +L+SI+++   L  L +    H  + +       SV N 
Sbjct: 401 CLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSAHCYSIKHLAGENSSVANA 460

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           LIS Y +CGN D+A  +F  M   +DVV+W+ +I  Y   GH + AL LY +M   G  P
Sbjct: 461 LISMYGRCGNFDVARKIF-GMVKTKDVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKP 519

Query: 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL 513
           +S+T +S++++C +      G +I +  +++  ++        +VD+  + G L    G+
Sbjct: 520 NSATLVSVISSCANLAALEHGELIHSH-VKDVGLECDLSICTALVDMYMKCGQL----GI 574

Query: 514 AGKLLEGMGPN---IWRALLSGCVLHVGRFQDAEALRSGS-QKKGIIKIPGISFL 564
           A K+ + M       W  ++SG  +H    Q   AL+  S  ++G +K   ++FL
Sbjct: 575 ARKMFDSMLERDVVTWNVMISGYGMHGEAIQ---ALKLFSMMERGNVKPNSLTFL 626



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 125/515 (24%), Positives = 239/515 (46%), Gaps = 36/515 (6%)

Query: 5   PYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML 64
           P   S L S Y K    ++A  LF E+PEK++VSW+ +I  Y   G  EK+++ F  M  
Sbjct: 250 PSVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEE 309

Query: 65  SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK--FG--------------------L 102
           SGL P+   +  +L        +   ++ H  +V+  FG                    +
Sbjct: 310 SGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDI 369

Query: 103 ESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLF---NFFRGSGLVPNAVTMLTVIRG 159
            + +F  L      S +++V  +    L  + + L+    F        +  +++++I  
Sbjct: 370 AATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISS 429

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C  LG   L +  H  +IK     + SV N+++ MY    + D A +IF  ++ KDV++W
Sbjct: 430 CSRLGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTW 489

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           + ++  +    ++ DAL ++ +M    +  ++  L+++IS  A L  L+ G+ +H+ V  
Sbjct: 490 SALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKD 549

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            GL+ +L +  +++ MY KCG L  +R +F+ + E+ +V+W  +ISGY  +G A +AL  
Sbjct: 550 VGLECDLSICTALVDMYMKCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKL 609

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAAL----EICLQLHGIAFEAGFPRYRSVQNCLI 395
           F  M +      +S+T ++IL+A      +    E+  ++   + E     Y     C++
Sbjct: 610 FSMMERGNVKP-NSLTFLAILSACCHAGLVDKGRELFTRMEEYSLEPNLKHY----ACMV 664

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
               K G++  A  V   M    D   W T++    ++ + E  L +  K   + +  + 
Sbjct: 665 DLLGKSGHLQEAEDVVSAMPIEPDGGIWGTLLGACKMHDNFEMGLRVAKKAFAS-DPEND 723

Query: 456 STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPS 490
             Y+ + N+ G A   N+ +     M++ + V+ S
Sbjct: 724 GYYILMSNSYGSAEKWNE-IEKLRDMMKNHGVEKS 757



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 83/201 (41%), Gaps = 9/201 (4%)

Query: 273 LHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC 332
           LHA  V  GL      +  +++ YS  G    +   F          W +++    +   
Sbjct: 28  LHALAVTSGLSPRPDFAAKLVSAYSSAGLPALAALAFAASPCPDAFLWNSLLRSRHRASD 87

Query: 333 AREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYR---S 389
               L+   +MR          T   + +A+ EL AL +   +H  +   G        +
Sbjct: 88  FASTLSAHRRMRASGARP-SRFTAPLVASAAAELGALPVGAAVHAYSVRFGLLEGDGSVA 146

Query: 390 VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
           V + L+  Y++CG+V  A  +F+EM   RDVV+W  +I G   NG     L+   +M  +
Sbjct: 147 VASSLVYMYARCGSVRDAVRLFDEMP-ERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRS 205

Query: 450 ----GEVPDSSTYLSILNACG 466
               G  P+S T  S L ACG
Sbjct: 206 AGDGGARPNSRTMESGLEACG 226


>gi|78499697|gb|ABB45851.1| hypothetical protein [Eutrema halophilum]
          Length = 697

 Score =  251 bits (641), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 173/609 (28%), Positives = 281/609 (46%), Gaps = 60/609 (9%)

Query: 12  LSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS--GLLP 69
           L +   SGK++ A  +FD++P +++ SW+ ++ GY      E+++  FS M +   G+  
Sbjct: 35  LQDLIDSGKLRVARQVFDKMPRRDIKSWTAIMKGYVAATKPEEALILFSAMRVDPLGVSG 94

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPYL------------ 115
           +++ +   L A     N+    S+H    K  L S +F G  L + Y+            
Sbjct: 95  DTYVLSVALKACGQSSNIAYGESLHAYAEKTFLLSSVFVGSALLDMYMRIGKIDKSCRVF 154

Query: 116 --------VSCNAIVAGFINNKLFQQAVLLFN-FFRGSGLVPNAVTMLTVIRGCVALGSR 166
                   V+  A + G ++  L  + +  F+   R   L  +       ++ C  L   
Sbjct: 155 AEMPFRNSVTWTAFITGLVHAGLHYEGLRYFSQMSRFKQLSSDTFAFAIALKACADLRQV 214

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
                IH   I  G    + V NS+  MY+   ++   +++F  M  +DV+ WT ++  +
Sbjct: 215 KYGREIHTHVIVKGFAAILWVANSLATMYTECGEMQDGLRLFESMSERDVVLWTSLITAY 274

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
           +       A+  F  MR S++  +     +  +  A L  L  G+QLH  V   GL   L
Sbjct: 275 IRIGQEEKAVNTFLLMRNSQVSPNEQTFASTFAACASLSRLVWGEQLHGNVFSLGLGDSL 334

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            +SNS++ MYS C  LDS+  +F  +  + ++SW+ II GY Q     E    F  MRQ 
Sbjct: 335 SVSNSMMKMYSTCAKLDSASVLFQGMRCRDIISWSTIIGGYSQAAFGEECFKYFSWMRQA 394

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
                D   L S+L+ SG +A LE   Q+H +A   G  +  ++++ LI+ YSKCG++  
Sbjct: 395 GPQPTD-FALASLLSVSGIMAVLEQGRQVHALALYLGLEQNPTIRSALINMYSKCGSIIE 453

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           A  VFEE     D+VS   +I GY  +G  E A+ L+ K  +    PD  T++S+L AC 
Sbjct: 454 ASKVFEEKD-RTDIVSLTAMINGYAEHGKCEEAIDLFEKSLKLSFRPDDVTFISVLTACS 512

Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIW 526
           H+G  + G   FN M E   ++P++EHYGC+VDLL RAG L+DA  +  ++       +W
Sbjct: 513 HSGQLDLGFQYFNLMQENYNMRPAKEHYGCMVDLLCRAGRLNDAEKMINEMPWKKDDVVW 572

Query: 527 RALLSGCV-------------------------------LH--VGRFQDAEALRSGSQKK 553
             LL  C                                +H   G +++A  +R   + K
Sbjct: 573 TTLLRACKEKGDVERGRRAAQRILELDPTSFTTLVTLANIHSSTGNWKEAANVRKDMKSK 632

Query: 554 GIIKIPGIS 562
           G+IK PG S
Sbjct: 633 GVIKEPGWS 641



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 134/478 (28%), Positives = 227/478 (47%), Gaps = 27/478 (5%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM-MLSGL 67
           S LL  Y + GKI ++  +F E+P +N V+W+  I G    G H + ++ FS M     L
Sbjct: 135 SALLDMYMRIGKIDKSCRVFAEMPFRNSVTWTAFITGLVHAGLHYEGLRYFSQMSRFKQL 194

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES----------------------D 105
             ++F     L A A L+ ++  R IH  ++  G  +                       
Sbjct: 195 SSDTFAFAIALKACADLRQVKYGREIHTHVIVKGFAAILWVANSLATMYTECGEMQDGLR 254

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           LFE +    +V   +++  +I     ++AV  F   R S + PN  T  +    C +L  
Sbjct: 255 LFESMSERDVVLWTSLITAYIRIGQEEKAVNTFLLMRNSQVSPNEQTFASTFAACASLSR 314

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
               E +HG    LGL   +SV+NS++ MYS    LD+A  +F+ M C+D+ISW+ ++G 
Sbjct: 315 LVWGEQLHGNVFSLGLGDSLSVSNSMMKMYSTCAKLDSASVLFQGMRCRDIISWSTIIGG 374

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +    +  +  K F  MR++       AL +L+SV+ I+  L++G+Q+HA  +  GL+  
Sbjct: 375 YSQAAFGEECFKYFSWMRQAGPQPTDFALASLLSVSGIMAVLEQGRQVHALALYLGLEQN 434

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
             + +++I MYSKCG +  +  VF +     +VS TA+I+GY ++G   EA++ F K   
Sbjct: 435 PTIRSALINMYSKCGSIIEASKVFEEKDRTDIVSLTAMINGYAEHGKCEEAIDLFEK-SL 493

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPR-YRSVQNCLISSYSKCGNV 404
           + +   D +T +S+LTA      L++  Q   +  E    R  +    C++    + G +
Sbjct: 494 KLSFRPDDVTFISVLTACSHSGQLDLGFQYFNLMQENYNMRPAKEHYGCMVDLLCRAGRL 553

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
           + A  +  EM + +D V W T++      G  E       ++ E    P S T L  L
Sbjct: 554 NDAEKMINEMPWKKDDVVWTTLLRACKEKGDVERGRRAAQRILELD--PTSFTTLVTL 609



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 89/413 (21%), Positives = 187/413 (45%), Gaps = 40/413 (9%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           + ++ L + Y + G++++   LF+ + E++VV W+ +I  Y   G  EK++  F  M  S
Sbjct: 234 WVANSLATMYTECGEMQDGLRLFESMSERDVVLWTSLITAYIRIGQEEKAVNTFLLMRNS 293

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL----------------------E 103
            + PN  T      A A L  L     +HG +   GL                       
Sbjct: 294 QVSPNEQTFASTFAACASLSRLVWGEQLHGNVFSLGLGDSLSVSNSMMKMYSTCAKLDSA 353

Query: 104 SDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPN--AVTMLTVIRGCV 161
           S LF+G++   ++S + I+ G+      ++    F++ R +G  P   A+  L  + G +
Sbjct: 354 SVLFQGMRCRDIISWSTIIGGYSQAAFGEECFKYFSWMRQAGPQPTDFALASLLSVSGIM 413

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
           A+  +     +H L + LGL  + ++ +++++MYS    +  A ++F E +  D++S T 
Sbjct: 414 AVLEQG--RQVHALALYLGLEQNPTIRSALINMYSKCGSIIEASKVFEEKDRTDIVSLTA 471

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG- 280
           M+  + +     +A+ +F +  K     D V  +++++  +  G L  G Q    +    
Sbjct: 472 MINGYAEHGKCEEAIDLFEKSLKLSFRPDDVTFISVLTACSHSGQLDLGFQYFNLMQENY 531

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAII-----SGYVQNGCAR 334
            ++        ++ +  + G L+ +  + N++  +K  V WT ++      G V+ G  R
Sbjct: 532 NMRPAKEHYGCMVDLLCRAGRLNDAEKMINEMPWKKDDVVWTTLLRACKEKGDVERG--R 589

Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASG---ELAALEICLQLHGIAFEAGF 384
            A  + +++  + T     +TL +I +++G   E A +   ++  G+  E G+
Sbjct: 590 RAAQRILEL--DPTSFTTLVTLANIHSSTGNWKEAANVRKDMKSKGVIKEPGW 640



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 48/94 (51%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           +P   S L++ Y K G I EA  +F+E    ++VS + +I+GY+ +G  E+++  F   +
Sbjct: 434 NPTIRSALINMYSKCGSIIEASKVFEEKDRTDIVSLTAMINGYAEHGKCEEAIDLFEKSL 493

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLM 97
                P+  T + VL A +    L+L      LM
Sbjct: 494 KLSFRPDDVTFISVLTACSHSGQLDLGFQYFNLM 527


>gi|15236277|ref|NP_195239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098809|sp|O49619.1|PP350_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g35130, chloroplastic; Flags: Precursor
 gi|2924523|emb|CAA17777.1| putative protein [Arabidopsis thaliana]
 gi|7270464|emb|CAB80230.1| putative protein [Arabidopsis thaliana]
 gi|332661071|gb|AEE86471.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 804

 Score =  251 bits (641), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 161/558 (28%), Positives = 291/558 (52%), Gaps = 41/558 (7%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           ++ L  +  S  +++A  LFDE+ + +   W+++I G++  G + ++++ +S M+ +G+ 
Sbjct: 68  TRALRGFADSRLMEDALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVK 127

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------------- 106
            ++FT   V+ + AG+ +LE  + IH +++K G  SD+                      
Sbjct: 128 ADTFTYPFVIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKV 187

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           FE +    +VS N++++G++       +++LF      G  P+  + ++ +  C  + S 
Sbjct: 188 FEEMPERDIVSWNSMISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSP 247

Query: 167 ALCELIHGLTIKLGLIL-DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
            + + IH   ++  +   DV V  S+LDMYS   ++  A +IF  M  +++++W  M+G 
Sbjct: 248 KMGKEIHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGC 307

Query: 226 FVDFEYAGDALKIFREMRKSR-IICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
           +       DA   F++M +   +  D +  +NL+  +AIL     G+ +H   +  G   
Sbjct: 308 YARNGRVTDAFLCFQKMSEQNGLQPDVITSINLLPASAIL----EGRTIHGYAMRRGFLP 363

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
            + L  ++I MY +CG L S+  +F+++ EK+++SW +II+ YVQNG    AL  F    
Sbjct: 364 HMVLETALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAYVQNGKNYSALELF---- 419

Query: 345 QEKTDS---VDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           QE  DS    DS T+ SIL A  E  +L    ++H    ++ +     + N L+  Y+ C
Sbjct: 420 QELWDSSLVPDSTTIASILPAYAESLSLSEGREIHAYIVKSRYWSNTIILNSLVHMYAMC 479

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G+++ A   F  +  L+DVVSWN+II  Y V+G G  ++ L+ +M  +   P+ ST+ S+
Sbjct: 480 GDLEDARKCFNHI-LLKDVVSWNSIIMAYAVHGFGRISVWLFSEMIASRVNPNKSTFASL 538

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L AC  +G+ ++G   F  M  E  + P  EHYGC++DL+ R G  S A     + LE M
Sbjct: 539 LAACSISGMVDEGWEYFESMKREYGIDPGIEHYGCMLDLIGRTGNFSAAK----RFLEEM 594

Query: 522 GPNIWRALLSGCVLHVGR 539
            P +  A + G +L+  R
Sbjct: 595 -PFVPTARIWGSLLNASR 611



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 130/502 (25%), Positives = 230/502 (45%), Gaps = 45/502 (8%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + L+S Y K G   +AE +F+E+PE+++VSW+ +I GY   G    S+  F  M+
Sbjct: 164 DVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIVSWNSMISGYLALGDGFSSLMLFKEML 223

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES------------------- 104
             G  P+ F+ +  L A + + + ++ + IH   V+  +E+                   
Sbjct: 224 KCGFKPDRFSTMSALGACSHVYSPKMGKEIHCHAVRSRIETGDVMVMTSILDMYSKYGEV 283

Query: 105 ----DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFN-FFRGSGLVPNAVTMLTVIRG 159
                +F G+    +V+ N ++  +  N     A L F      +GL P+ +T + ++  
Sbjct: 284 SYAERIFNGMIQRNIVAWNVMIGCYARNGRVTDAFLCFQKMSEQNGLQPDVITSINLLPA 343

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
              L  R     IHG  ++ G +  + +  +++DMY     L +A  IF  M  K+VISW
Sbjct: 344 SAILEGRT----IHGYAMRRGFLPHMVLETALIDMYGECGQLKSAEVIFDRMAEKNVISW 399

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
             ++  +V       AL++F+E+  S ++ D+  + +++   A    L  G+++HA +V 
Sbjct: 400 NSIIAAYVQNGKNYSALELFQELWDSSLVPDSTTIASILPAYAESLSLSEGREIHAYIVK 459

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
               S   + NS++ MY+ CGDL+ +R  FN I  K +VSW +II  Y  +G  R ++  
Sbjct: 460 SRYWSNTIILNSLVHMYAMCGDLEDARKCFNHILLKDVVSWNSIIMAYAVHGFGRISVWL 519

Query: 340 FIKMRQEKTDSVDSITLVSILTA---SGEL----AALEICLQLHGIAFEAGFPRYRSVQN 392
           F +M   + +   S T  S+L A   SG +       E   + +GI  + G   Y     
Sbjct: 520 FSEMIASRVNPNKS-TFASLLAACSISGMVDEGWEYFESMKREYGI--DPGIEHY----G 572

Query: 393 CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALY-HKMTETGE 451
           C++    + GN   A    EEM F+     W +++       H +  +A +  +     E
Sbjct: 573 CMLDLIGRTGNFSAAKRFLEEMPFVPTARIWGSLL--NASRNHKDITIAEFAAEQIFKME 630

Query: 452 VPDSSTYLSILNACGHAGLTND 473
             ++  Y+ +LN    AG   D
Sbjct: 631 HDNTGCYVLLLNMYAEAGRWED 652


>gi|297742233|emb|CBI34382.3| unnamed protein product [Vitis vinifera]
          Length = 705

 Score =  251 bits (641), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 168/556 (30%), Positives = 283/556 (50%), Gaps = 57/556 (10%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           + ++ L+  Y K G+I++A  LFD +P+K VVSW+ ++ G+   G  ++ +  F  M L 
Sbjct: 78  FVANSLMDMYAKCGRIEDAAKLFDHMPDKTVVSWTSMMSGHCQRGAFDEVISIFWRM-LE 136

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY--------- 114
            L PN +T+  +L A A  ++L+L + IH  ++K G   D F    L + Y         
Sbjct: 137 TLQPNEYTLAVILQACAQKRDLKLVQLIHCHIIKTGFVMDAFLQNSLIDGYTKSGTLVAA 196

Query: 115 -----------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
                      +VS  ++++G + N + ++A+L F   +  G+ PN VT+L++++ C  +
Sbjct: 197 EKLMKRLICRDVVSWTSVISGCVLNGMVEKALLFFFEMQEDGVSPNTVTILSILQACSLI 256

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
               + + +HGL +K     +V V NS+++MYS         QIF               
Sbjct: 257 NEWQVFQWVHGLVMKAEWRENVFVMNSLVEMYSINGYFKEGFQIF--------------- 301

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
               +F + GD   +            T  +  L+   +    LK G+Q+H   +  G  
Sbjct: 302 ---CNFCFEGDGQYL-----------STETIATLLQGCSHSKCLKLGEQIHGYQIKHGFF 347

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
               + NS+I MY++    D++  +F +++ + +VSW  +IS  V+   + +AL    ++
Sbjct: 348 PCTIVENSLIYMYAENERDDAAFQLFRKMSCRDIVSWNTMISSLVKGSSSYQALMLLSEV 407

Query: 344 RQEKTDSV---DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
                  +   D +T+++ + A   LA+L++   +HG    AG      VQN L+  Y K
Sbjct: 408 HSNGGSDMIYPDFVTILASIQACSSLASLQLGQVIHGYITRAGLICDIFVQNSLVDMYGK 467

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG-EVPDSSTYL 459
           CG + LA  V EEM  +RD+ SWN++I  YG+NG+G +AL ++ ++  TG   P++ T+ 
Sbjct: 468 CGRLHLAEKVSEEMP-VRDLGSWNSLIAAYGINGNGISALNVFKQLKNTGAHRPNAITFT 526

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519
           +IL+AC HAGL  +G  IF  M  E  ++P  EH+ C+VDLL RAG L +A     K+  
Sbjct: 527 NILSACAHAGLVAEGFEIFKSMKREYSLEPRIEHFACMVDLLGRAGRLEEAEAFIQKMPF 586

Query: 520 GMGPNIWRALLSGCVL 535
             GP +W ALL GC L
Sbjct: 587 EPGPEVWGALLGGCGL 602



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 127/462 (27%), Positives = 221/462 (47%), Gaps = 38/462 (8%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  + L+  Y KSG +  AE L   +  ++VVSW+ VI G  +NG  EK++  F  M
Sbjct: 175 MDAFLQNSLIDGYTKSGTLVAAEKLMKRLICRDVVSWTSVISGCVLNGMVEKALLFFFEM 234

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIV 122
              G+ PN+ T++ +L A + +   ++ + +HGL++K     ++F           N++V
Sbjct: 235 QEDGVSPNTVTILSILQACSLINEWQVFQWVHGLVMKAEWRENVF---------VMNSLV 285

Query: 123 AGFINNKLFQQAVLLF-NF-FRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLG 180
             +  N  F++   +F NF F G G   +  T+ T+++GC       L E IHG  IK G
Sbjct: 286 EMYSINGYFKEGFQIFCNFCFEGDGQYLSTETIATLLQGCSHSKCLKLGEQIHGYQIKHG 345

Query: 181 LILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFR 240
                 V NS++ MY+     DAA Q+FR+M C+D++SW  M+   V    +  AL +  
Sbjct: 346 FFPCTIVENSLIYMYAENERDDAAFQLFRKMSCRDIVSWNTMISSLVKGSSSYQALMLLS 405

Query: 241 EMRKS----RIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMY 296
           E+  +     I  D V +L  I   + L  L+ G+ +H  +   GL  ++ + NS++ MY
Sbjct: 406 EVHSNGGSDMIYPDFVTILASIQACSSLASLQLGQVIHGYITRAGLICDIFVQNSLVDMY 465

Query: 297 SKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITL 356
            KCG L  +  V  ++  + L SW ++I+ Y  NG    ALN F +++       ++IT 
Sbjct: 466 GKCGRLHLAEKVSEEMPVRDLGSWNSLIAAYGINGNGISALNVFKQLKNTGAHRPNAITF 525

Query: 357 VSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN------------CLISSYSKCGNV 404
            +IL+A             H      GF  ++S++             C++    + G +
Sbjct: 526 TNILSACA-----------HAGLVAEGFEIFKSMKREYSLEPRIEHFACMVDLLGRAGRL 574

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM 446
           + A    ++M F      W  ++ G G+ G+ + A  +  K+
Sbjct: 575 EEAEAFIQKMPFEPGPEVWGALLGGCGLFGNLDIAERVAKKL 616



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 124/218 (56%), Gaps = 3/218 (1%)

Query: 248 ICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRS 307
           + D++  + ++S  A   DL+ G  +H  ++  GL + + ++NS++ MY+KCG ++ +  
Sbjct: 39  LSDSLTAVRVLSSCAANRDLRLGSCIHTNILKSGLHTNVFVANSLMDMYAKCGRIEDAAK 98

Query: 308 VFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELA 367
           +F+ + +K++VSWT+++SG+ Q G   E ++ F +M +  T   +  TL  IL A  +  
Sbjct: 99  LFDHMPDKTVVSWTSMMSGHCQRGAFDEVISIFWRMLE--TLQPNEYTLAVILQACAQKR 156

Query: 368 ALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
            L++   +H    + GF     +QN LI  Y+K G +  A  + + +   RDVVSW ++I
Sbjct: 157 DLKLVQLIHCHIIKTGFVMDAFLQNSLIDGYTKSGTLVAAEKLMKRL-ICRDVVSWTSVI 215

Query: 428 YGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            G  +NG  E AL  + +M E G  P++ T LSIL AC
Sbjct: 216 SGCVLNGMVEKALLFFFEMQEDGVSPNTVTILSILQAC 253



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 89/339 (26%), Positives = 153/339 (45%), Gaps = 42/339 (12%)

Query: 149 NAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIF 208
           +++T + V+  C A     L   IH   +K GL  +V V NS++DMY+    ++ A ++F
Sbjct: 41  DSLTAVRVLSSCAANRDLRLGSCIHTNILKSGLHTNVFVANSLMDMYAKCGRIEDAAKLF 100

Query: 209 REMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLK 268
             M  K V+SWT MM          + + IF  M ++ +  +   L  ++   A   DLK
Sbjct: 101 DHMPDKTVVSWTSMMSGHCQRGAFDEVISIFWRMLET-LQPNEYTLAVILQACAQKRDLK 159

Query: 269 RGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYV 328
             + +H  ++  G   +  L NS+I  Y+K G L ++  +  ++  + +VSWT++ISG V
Sbjct: 160 LVQLIHCHIIKTGFVMDAFLQNSLIDGYTKSGTLVAAEKLMKRLICRDVVSWTSVISGCV 219

Query: 329 QNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYR 388
            NG   +AL  F +M QE   S +++T++SIL A   +   ++   +HG+  +A +    
Sbjct: 220 LNGMVEKALLFFFEM-QEDGVSPNTVTILSILQACSLINEWQVFQWVHGLVMKAEWRENV 278

Query: 389 SVQNCLISSYSKCGNVDLAYIVF---------------------------------EEM- 414
            V N L+  YS  G     + +F                                 E++ 
Sbjct: 279 FVMNSLVEMYSINGYFKEGFQIFCNFCFEGDGQYLSTETIATLLQGCSHSKCLKLGEQIH 338

Query: 415 ------GFLRDVVSWNTIIYGYGVNGHGETALALYHKMT 447
                 GF    +  N++IY Y  N   + A  L+ KM+
Sbjct: 339 GYQIKHGFFPCTIVENSLIYMYAENERDDAAFQLFRKMS 377


>gi|297742828|emb|CBI35582.3| unnamed protein product [Vitis vinifera]
          Length = 638

 Score =  251 bits (641), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 168/583 (28%), Positives = 292/583 (50%), Gaps = 61/583 (10%)

Query: 39  WSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMV 98
           W+ +I GYSI G     ++ ++ M+  G+ P+  T   VL A A    +   R +HG +V
Sbjct: 10  WNTLIRGYSIAGV-GGGLEVYNQMVRIGVRPDDHTFPFVLKACADAFEVRKGREVHGSVV 68

Query: 99  KFGLESDLFEG----------------------LKNPYLVSCNAIVAGF-INNKLFQQAV 135
           K G ESD+F G                      +    LVS N ++  F +N   ++ A+
Sbjct: 69  KLGFESDVFVGNTLLSFYGNCGGLRDAGRVFDEMPEKDLVSWNTMIGVFSVNGWHYRDAL 128

Query: 136 LLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMY 195
            +F      GL PN++T+ + +   V L        +HG +I++GL  D+ + NS++DMY
Sbjct: 129 DMFRLMIDEGLKPNSITISSFLPVLVELEFFKAGREVHGSSIRMGLESDIFIANSLIDMY 188

Query: 196 SCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALL 255
           +       A  +F +++ K+V+SW  M+  F    +   A+ + R+M+    + ++V   
Sbjct: 189 AKSGHSTEASNVFYKLDAKNVVSWNAMIANFAQNRFELVAVGLVRQMQDYGELPNSVTFT 248

Query: 256 NLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK 315
           N++   A +G ++ GK++HA+ +  G   +L +SN++  MY+K G L  +R+VF+  + +
Sbjct: 249 NVLPACARMGLVRPGKEIHARSIHMGCAFDLFVSNALTDMYAKSGHLKLARNVFD-TSLR 307

Query: 316 SLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQL 375
             VS+  +I G+ Q     E+L+ F +M Q      D+++ +  L+A   L A++   ++
Sbjct: 308 DEVSYNILIVGHSQTSDCSESLSLFSEM-QLMGLKQDNVSFMGALSACANLTAIKQGKEI 366

Query: 376 HGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGH 435
           HG      F  +  V N L+  Y+KCG + LA  +F+ M   +DV SWNT+I GYG+ G 
Sbjct: 367 HGFLLRKLFHIHLFVANSLLDFYTKCGRIGLARNIFDRMTN-KDVASWNTMILGYGMLGE 425

Query: 436 GETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYG 495
            +TA+ L+  M +     DS +++++L+AC H GL   G   F+++ +   ++P+Q HY 
Sbjct: 426 LDTAIDLFENMRKDDVEYDSVSFIAVLSACSHGGLLEKGRKYFDEL-KARGIEPTQMHYA 484

Query: 496 CVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH------------------- 536
           C+VDLL RAG + +A+ L   L      NIW ALL  C ++                   
Sbjct: 485 CMVDLLGRAGLMEEAAELIKGLPIVPDANIWGALLGACRIYGNLELAAWAAEHLFELKPE 544

Query: 537 --------------VGRFQDAEALRSGSQKKGIIKIPGISFLN 565
                          GR+ +A  +R   + +G+ K PG S++ 
Sbjct: 545 HSGYYTLLSNMYAETGRWDEANRIRELMKSRGVKKSPGCSWVQ 587



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 141/548 (25%), Positives = 262/548 (47%), Gaps = 38/548 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEK-SMKAFSHM 62
           D +  + LLS Y   G +++A  +FDE+PEK++VSW+ +I  +S+NG+H + ++  F  M
Sbjct: 75  DVFVGNTLLSFYGNCGGLRDAGRVFDEMPEKDLVSWNTMIGVFSVNGWHYRDALDMFRLM 134

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------- 106
           +  GL PNS T+   L     L+  +  R +HG  ++ GLESD+                
Sbjct: 135 IDEGLKPNSITISSFLPVLVELEFFKAGREVHGSSIRMGLESDIFIANSLIDMYAKSGHS 194

Query: 107 ------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                 F  L    +VS NA++A F  N+    AV L    +  G +PN+VT   V+  C
Sbjct: 195 TEASNVFYKLDAKNVVSWNAMIANFAQNRFELVAVGLVRQMQDYGELPNSVTFTNVLPAC 254

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             +G     + IH  +I +G   D+ V+N++ DMY+    L  A  +F +   +D +S+ 
Sbjct: 255 ARMGLVRPGKEIHARSIHMGCAFDLFVSNALTDMYAKSGHLKLARNVF-DTSLRDEVSYN 313

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++          ++L +F EM+   +  D V+ +  +S  A L  +K+GK++H  ++  
Sbjct: 314 ILIVGHSQTSDCSESLSLFSEMQLMGLKQDNVSFMGALSACANLTAIKQGKEIHGFLLRK 373

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
                L ++NS++  Y+KCG +  +R++F+++T K + SW  +I GY   G    A++ F
Sbjct: 374 LFHIHLFVANSLLDFYTKCGRIGLARNIFDRMTNKDVASWNTMILGYGMLGELDTAIDLF 433

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
             MR++  +  DS++ +++L+A      LE   +        G    +    C++    +
Sbjct: 434 ENMRKDDVE-YDSVSFIAVLSACSHGGLLEKGRKYFDELKARGIEPTQMHYACMVDLLGR 492

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
            G ++ A  + + +  + D   W  ++    + G+ E A      + E    P+ S Y +
Sbjct: 493 AGLMEEAAELIKGLPIVPDANIWGALLGACRIYGNLELAAWAAEHLFELK--PEHSGYYT 550

Query: 461 IL-NACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCV-VDLLARAGCLSDASGLAGKLL 518
           +L N     G  ++     N++ E  K +  ++  GC  V +  +A        + G+ +
Sbjct: 551 LLSNMYAETGRWDEA----NRIRELMKSRGVKKSPGCSWVQIGEQAHAF-----VVGEKI 601

Query: 519 EGMGPNIW 526
           EG+   +W
Sbjct: 602 EGLDLGLW 609


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  251 bits (641), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 168/567 (29%), Positives = 277/567 (48%), Gaps = 58/567 (10%)

Query: 55  SMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKN 112
           ++ AF  M  +G  P   T   +L   A   +L   R++H  +   G++S+      L N
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 113 PYL--------------------VSCNAIVAGFINNKLFQQAV-LLFNFFRGSGLVPNAV 151
            Y                     V+ NA+VAG+  N L + A+ ++       G  P+++
Sbjct: 103 MYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSI 162

Query: 152 TMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM 211
           T+++V+  C    + A C   H   I+ GL   V+V  ++LD Y    D+ AA  +F  M
Sbjct: 163 TLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWM 222

Query: 212 ECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGK 271
             K+ +SW  M+  +     + +AL +F  M +  +    V++L  +     LG L  G 
Sbjct: 223 PTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGM 282

Query: 272 QLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNG 331
           ++H  +V  GL S + + N++I MYSKC  +D +  VF+++  ++ VSW A+I G  QNG
Sbjct: 283 RVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNG 342

Query: 332 CAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ 391
           C+ +A+  F +M+ E     DS TLVS++ A  +++       +HG +      +   V 
Sbjct: 343 CSEDAVRLFTRMQLENVKP-DSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVL 401

Query: 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE 451
             LI  Y+KCG V++A I+F      R V++WN +I+GYG +G G+ A+ L+ +M   G 
Sbjct: 402 TALIDMYAKCGRVNIARILFNS-ARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGI 460

Query: 452 VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDAS 511
           VP+ +T+LS+L+AC HAGL ++G   F  M E+  ++P  EHYG +VDLL RAG L +A 
Sbjct: 461 VPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAW 520

Query: 512 GLAGKLLEGMGPNIWRALLSGCVLH---------------------------------VG 538
               K+    G +++ A+L  C LH                                   
Sbjct: 521 AFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANAS 580

Query: 539 RFQDAEALRSGSQKKGIIKIPGISFLN 565
            ++D   +R+  +K G+ K PG S + 
Sbjct: 581 MWKDVARVRTAMEKNGLQKTPGWSIIQ 607



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 156/328 (47%), Gaps = 23/328 (7%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ +L  Y K G I+ A  +FD +P KN VSW+ +I GY+ NG   +++  F+ M+  G+
Sbjct: 199 ATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGV 258

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
                +++  L A   L  L+    +H L+V+ GL+S+                      
Sbjct: 259 DVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASH 318

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F+ L     VS NA++ G   N   + AV LF   +   + P++ T+++VI     +  
Sbjct: 319 VFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISD 378

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
                 IHG +I+L L  DV V  +++DMY+    ++ A  +F     + VI+W  M+  
Sbjct: 379 PLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHG 438

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG-GLQS 284
           +    +   A+++F EM+   I+ +    L+++S  +  G +  G++    +    GL+ 
Sbjct: 439 YGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEP 498

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQI 312
            +    +++ +  + G LD + +   ++
Sbjct: 499 GMEHYGTMVDLLGRAGKLDEAWAFIQKM 526



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 46/77 (59%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + L+  Y K G++  A  LF+   E++V++W+ +IHGY  +GF + +++ F  M 
Sbjct: 397 DVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMK 456

Query: 64  LSGLLPNSFTMVGVLVA 80
             G++PN  T + VL A
Sbjct: 457 SIGIVPNETTFLSVLSA 473


>gi|449502637|ref|XP_004161700.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 847

 Score =  251 bits (640), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 165/556 (29%), Positives = 283/556 (50%), Gaps = 29/556 (5%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D Y  + L+  Y +   +  +  +F  +  +N+VSW+ +I G+   G   K++K +S M
Sbjct: 195 MDAYVGTALVGFYMRFDAVL-SHRVFSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSM 253

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY------ 114
           ++ G+  ++ TM+ V+ A A    L L   +H L +KF L +DLF    L N Y      
Sbjct: 254 LIEGIKFDAVTMLVVIQACAEYGCLRLGMQLHQLAIKFNLINDLFILNALLNMYSDNGSL 313

Query: 115 --------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                             N++++ +I      +A+ LF   R   +  +  T+  ++  C
Sbjct: 314 ESSWALFNAVPTSDAALWNSMISSYIGFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLC 373

Query: 161 VALGSRALC-ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
             L   ++    +H   +K G+ LD  + N++L MY     + AA  +F +M   DVISW
Sbjct: 374 NDLNDGSIWGRGLHAHAMKSGIELDAYLGNALLSMYVKHNQITAAQYVFEKMRGLDVISW 433

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
             M+  F    +   A ++F  M +S I  ++  +++L++      DL  G+ +H   + 
Sbjct: 434 NTMISAFAQSMFRAKAFELFLMMCESEIKFNSYTIVSLLAFCKDGSDLVFGRSIHGFAIK 493

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            GL+    L+ S+  MY  CGD  ++ ++F +  ++ LVSW ++IS Y++N  A +AL  
Sbjct: 494 NGLEINTSLNTSLTEMYINCGDERAATNMFTRCPQRDLVSWNSLISSYIKNDNAGKALLL 553

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEI--CLQLHGIAFEAGFPRYRSVQNCLISS 397
           F  M  E     +S+T+++ILT+  +LA L +  CL  +    E       S+ N  I+ 
Sbjct: 554 FNHMISELEP--NSVTIINILTSCTQLAHLPLGQCLHAYTTRREVSLEMDASLANAFITM 611

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           Y++CG +  A  +F  +   R +VSWN +I GYG++G G  A   + +M + G  P++ +
Sbjct: 612 YARCGKLQYAEKIFCTLQ-TRSIVSWNAMITGYGMHGRGRDATLAFAQMLDDGFKPNNVS 670

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL 517
           + S+L+AC H+GLT  GL +F+ M+ +  + P   HYGC+VDLL R G  S+A      +
Sbjct: 671 FASVLSACSHSGLTVTGLQLFHSMVRDFGIAPQLTHYGCMVDLLGRGGHFSEAIAFINSM 730

Query: 518 LEGMGPNIWRALLSGC 533
                 +IWRALLS C
Sbjct: 731 PIEPDASIWRALLSSC 746



 Score =  204 bits (519), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 167/608 (27%), Positives = 290/608 (47%), Gaps = 51/608 (8%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + L+  Y K G + EA  +F E+PE+++VSW+ +I GY     +++++  F  M  +GL 
Sbjct: 99  TALVDFYCKCGLVAEASKVFVEMPERDLVSWNALISGYVGCLCYKEAVLLFVEMKKAGLT 158

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL-ESDLFEG------------------ 109
           PNS T+V +L+A   +  L L + IHG  ++ GL + D + G                  
Sbjct: 159 PNSRTVVALLLACGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALVGFYMRFDAVLSHRV 218

Query: 110 -----LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
                ++N  +VS NAI+ GF+N     +A+ L++     G+  +AVTML VI+ C   G
Sbjct: 219 FSLMLVRN--IVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQACAEYG 276

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
              L   +H L IK  LI D+ + N++L+MYS    L+++  +F  +   D   W  M+ 
Sbjct: 277 CLRLGMQLHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVPTSDAALWNSMIS 336

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLK-RGKQLHAQVVLGGLQ 283
            ++ F +  +A+ +F +MR  RI  D   +  ++S+   L D    G+ LHA  +  G++
Sbjct: 337 SYIGFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLCNDLNDGSIWGRGLHAHAMKSGIE 396

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
            +  L N++++MY K   + +++ VF ++    ++SW  +IS + Q+    +A   F+ M
Sbjct: 397 LDAYLGNALLSMYVKHNQITAAQYVFEKMRGLDVISWNTMISAFAQSMFRAKAFELFLMM 456

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
            + +    +S T+VS+L    + + L     +HG A + G     S+   L   Y  CG+
Sbjct: 457 CESEI-KFNSYTIVSLLAFCKDGSDLVFGRSIHGFAIKNGLEINTSLNTSLTEMYINCGD 515

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
              A  +F      RD+VSWN++I  Y  N +   AL L++ M    E P+S T ++IL 
Sbjct: 516 ERAATNMFTRCP-QRDLVSWNSLISSYIKNDNAGKALLLFNHMISELE-PNSVTIINILT 573

Query: 464 ACGHAGLTNDGLVIFNQMI-EENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMG 522
           +C        G  +       E  ++         + + AR G L  A  +    L+   
Sbjct: 574 SCTQLAHLPLGQCLHAYTTRREVSLEMDASLANAFITMYARCGKLQYAEKIFCT-LQTRS 632

Query: 523 PNIWRALLSGCVLHVGRFQD-----AEALRSGSQKKGI-------------IKIPGISFL 564
              W A+++G  +H GR +D     A+ L  G +   +             + + G+   
Sbjct: 633 IVSWNAMITGYGMH-GRGRDATLAFAQMLDDGFKPNNVSFASVLSACSHSGLTVTGLQLF 691

Query: 565 NSTSRDFG 572
           +S  RDFG
Sbjct: 692 HSMVRDFG 699



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 132/452 (29%), Positives = 217/452 (48%), Gaps = 32/452 (7%)

Query: 40  SIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHG---- 95
           SI+ H   +   H   +  ++ M   G+ P+S TM  VL A   L  +     IH     
Sbjct: 30  SIIKHHTKLKNDH-AILSTYTQMESLGITPDSATMPLVLKACGRLNAIGNGVRIHSCIRG 88

Query: 96  ---------------LMVKFGL---ESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLL 137
                             K GL    S +F  +    LVS NA+++G++    +++AVLL
Sbjct: 89  LDLINDVRVGTALVDFYCKCGLVAEASKVFVEMPERDLVSWNALISGYVGCLCYKEAVLL 148

Query: 138 FNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLI-LDVSVNNSVLDMYS 196
           F   + +GL PN+ T++ ++  C  +    L + IHG  ++ GL  +D  V  +++  Y 
Sbjct: 149 FVEMKKAGLTPNSRTVVALLLACGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALVGFY- 207

Query: 197 CLMDLDAAI--QIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVAL 254
             M  DA +  ++F  M  ++++SW  ++  F++      ALK++  M    I  D V +
Sbjct: 208 --MRFDAVLSHRVFSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAVTM 265

Query: 255 LNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE 314
           L +I   A  G L+ G QLH   +   L ++L + N+++ MYS  G L+SS ++FN +  
Sbjct: 266 LVVIQACAEYGCLRLGMQLHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVPT 325

Query: 315 KSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQ 374
                W ++IS Y+  G   EA+  FIKMR E+    D  T+  +L+   +L    I  +
Sbjct: 326 SDAALWNSMISSYIGFGFHAEAIALFIKMRLERIKE-DVRTIAIMLSLCNDLNDGSIWGR 384

Query: 375 -LHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVN 433
            LH  A ++G      + N L+S Y K   +  A  VFE+M  L DV+SWNT+I  +  +
Sbjct: 385 GLHAHAMKSGIELDAYLGNALLSMYVKHNQITAAQYVFEKMRGL-DVISWNTMISAFAQS 443

Query: 434 GHGETALALYHKMTETGEVPDSSTYLSILNAC 465
                A  L+  M E+    +S T +S+L  C
Sbjct: 444 MFRAKAFELFLMMCESEIKFNSYTIVSLLAFC 475



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 124/533 (23%), Positives = 238/533 (44%), Gaps = 38/533 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + LL+ Y  +G ++ +  LF+ +P  +   W+ +I  Y   GFH +++  F  M 
Sbjct: 296 DLFILNALLNMYSDNGSLESSWALFNAVPTSDAALWNSMISSYIGFGFHAEAIALFIKMR 355

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLEL-ARSIHGLMVKFGLESD----------------- 105
           L  +  +  T+  +L     L +  +  R +H   +K G+E D                 
Sbjct: 356 LERIKEDVRTIAIMLSLCNDLNDGSIWGRGLHAHAMKSGIELDAYLGNALLSMYVKHNQI 415

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +FE ++   ++S N +++ F  +    +A  LF     S +  N+ T+++++  C
Sbjct: 416 TAAQYVFEKMRGLDVISWNTMISAFAQSMFRAKAFELFLMMCESEIKFNSYTIVSLLAFC 475

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
                      IHG  IK GL ++ S+N S+ +MY    D  AA  +F     +D++SW 
Sbjct: 476 KDGSDLVFGRSIHGFAIKNGLEINTSLNTSLTEMYINCGDERAATNMFTRCPQRDLVSWN 535

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++  ++  + AG AL +F  M  S +  ++V ++N+++    L  L  G+ LHA     
Sbjct: 536 SLISSYIKNDNAGKALLLFNHM-ISELEPNSVTIINILTSCTQLAHLPLGQCLHAYTTRR 594

Query: 281 --GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
              L+ +  L+N+ I MY++CG L  +  +F  +  +S+VSW A+I+GY  +G  R+A  
Sbjct: 595 EVSLEMDASLANAFITMYARCGKLQYAEKIFCTLQTRSIVSWNAMITGYGMHGRGRDATL 654

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQL-HGIAFEAGFPRYRSVQNCLISS 397
            F +M  +     ++++  S+L+A          LQL H +  + G     +   C++  
Sbjct: 655 AFAQMLDDGFKP-NNVSFASVLSACSHSGLTVTGLQLFHSMVRDFGIAPQLTHYGCMVDL 713

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
             + G+   A      M    D   W  ++    +  + +    ++ K+ E  E  +   
Sbjct: 714 LGRGGHFSEAIAFINSMPIEPDASIWRALLSSCQIKSNNKLLETIFGKLVEL-EPSNPGN 772

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKP---------SQEHYGCVVDLL 501
           ++ + N    AGL ++ + I   + E    KP         +Q H+    D+L
Sbjct: 773 FILLSNIYAAAGLWSEVVQIRKWLRERGLGKPPGTSWIVIGNQVHHFTATDVL 825



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 167/332 (50%), Gaps = 9/332 (2%)

Query: 145 GLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAA 204
           G+ P++ TM  V++ C  L +      IH     L LI DV V  +++D Y     +  A
Sbjct: 55  GITPDSATMPLVLKACGRLNAIGNGVRIHSCIRGLDLINDVRVGTALVDFYCKCGLVAEA 114

Query: 205 IQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAIL 264
            ++F EM  +D++SW  ++  +V      +A+ +F EM+K+ +  ++  ++ L+     +
Sbjct: 115 SKVFVEMPERDLVSWNALISGYVGCLCYKEAVLLFVEMKKAGLTPNSRTVVALLLACGEM 174

Query: 265 GDLKRGKQLHAQVVLGGL-QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAI 323
            +L+ G+++H   +  GL   +  +  +++  Y +   + S R VF+ +  +++VSW AI
Sbjct: 175 LELRLGQEIHGYCLRNGLFDMDAYVGTALVGFYMRFDAVLSHR-VFSLMLVRNIVSWNAI 233

Query: 324 ISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG 383
           I+G++  G   +AL  +  M  E     D++T++ ++ A  E   L + +QLH +A +  
Sbjct: 234 ITGFLNVGDCAKALKLYSSMLIEGI-KFDAVTMLVVIQACAEYGCLRLGMQLHQLAIKFN 292

Query: 384 FPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGY-GVNGHGETALAL 442
                 + N L++ YS  G+++ ++ +F  +    D   WN++I  Y G   H E A+AL
Sbjct: 293 LINDLFILNALLNMYSDNGSLESSWALFNAVP-TSDAALWNSMISSYIGFGFHAE-AIAL 350

Query: 443 YHKMTETGEVPDSSTYLSILNACGHAGLTNDG 474
           + KM       D  T   +L+ C      NDG
Sbjct: 351 FIKMRLERIKEDVRTIAIMLSLCND---LNDG 379



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 129/253 (50%), Gaps = 4/253 (1%)

Query: 236 LKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAM 295
           L  + +M    I  D+  +  ++     L  +  G ++H+ +    L +++R+  +++  
Sbjct: 45  LSTYTQMESLGITPDSATMPLVLKACGRLNAIGNGVRIHSCIRGLDLINDVRVGTALVDF 104

Query: 296 YSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSIT 355
           Y KCG +  +  VF ++ E+ LVSW A+ISGYV   C +EA+  F++M++    + +S T
Sbjct: 105 YCKCGLVAEASKVFVEMPERDLVSWNALISGYVGCLCYKEAVLLFVEMKKAGL-TPNSRT 163

Query: 356 LVSILTASGELAALEICLQLHGIAFEAG-FPRYRSVQNCLISSYSKCGNVDLAYIVFEEM 414
           +V++L A GE+  L +  ++HG     G F     V   L+  Y +   V L++ VF  M
Sbjct: 164 VVALLLACGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALVGFYMRFDAV-LSHRVFSLM 222

Query: 415 GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDG 474
             +R++VSWN II G+   G    AL LY  M   G   D+ T L ++ AC   G    G
Sbjct: 223 -LVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQACAEYGCLRLG 281

Query: 475 LVIFNQMIEENKV 487
           + +    I+ N +
Sbjct: 282 MQLHQLAIKFNLI 294



 Score = 39.7 bits (91), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 12/117 (10%)

Query: 423 WNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFN--- 479
           WN+II  +    +    L+ Y +M   G  PDS+T   +L ACG      +G+ I +   
Sbjct: 28  WNSIIKHHTKLKNDHAILSTYTQMESLGITPDSATMPLVLKACGRLNAIGNGVRIHSCIR 87

Query: 480 --QMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCV 534
              +I + +V  +      +VD   + G +++AS +  ++ E    + W AL+SG V
Sbjct: 88  GLDLINDVRVGTA------LVDFYCKCGLVAEASKVFVEMPERDLVS-WNALISGYV 137


>gi|449448940|ref|XP_004142223.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 847

 Score =  251 bits (640), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 165/556 (29%), Positives = 283/556 (50%), Gaps = 29/556 (5%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D Y  + L+  Y +   +  +  +F  +  +N+VSW+ +I G+   G   K++K +S M
Sbjct: 195 MDAYVGTALVGFYMRFDAVL-SHRVFSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSM 253

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY------ 114
           ++ G+  ++ TM+ V+ A A    L L   +H L +KF L +DLF    L N Y      
Sbjct: 254 LIEGIKFDAVTMLVVIQACAEYGCLRLGMQLHQLAIKFNLINDLFILNALLNMYSDNGSL 313

Query: 115 --------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                             N++++ +I      +A+ LF   R   +  +  T+  ++  C
Sbjct: 314 ESSWALFNAVPTSDAALWNSMISSYIGFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLC 373

Query: 161 VALGSRALC-ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
             L   ++    +H   +K G+ LD  + N++L MY     + AA  +F +M   DVISW
Sbjct: 374 NDLNDGSIWGRGLHAHAMKSGIELDAYLGNALLSMYVKHNQITAAQYVFEKMRGLDVISW 433

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
             M+  F    +   A ++F  M +S I  ++  +++L++      DL  G+ +H   + 
Sbjct: 434 NTMISAFAQSMFRAKAFELFLMMCESEIKFNSYTIVSLLAFCKDGSDLVFGRSIHGFAIK 493

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            GL+    L+ S+  MY  CGD  ++ ++F +  ++ LVSW ++IS Y++N  A +AL  
Sbjct: 494 NGLEINTSLNTSLTEMYINCGDERAATNMFTRCPQRDLVSWNSLISSYIKNDNAGKALLL 553

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEI--CLQLHGIAFEAGFPRYRSVQNCLISS 397
           F  M  E     +S+T+++ILT+  +LA L +  CL  +    E       S+ N  I+ 
Sbjct: 554 FNHMISELEP--NSVTIINILTSCTQLAHLPLGQCLHAYTTRREVSLEMDASLANAFITM 611

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           Y++CG +  A  +F  +   R +VSWN +I GYG++G G  A   + +M + G  P++ +
Sbjct: 612 YARCGKLQYAEKIFCTLQ-TRSIVSWNAMITGYGMHGRGRDATLAFAQMLDDGFKPNNVS 670

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL 517
           + S+L+AC H+GLT  GL +F+ M+ +  + P   HYGC+VDLL R G  S+A      +
Sbjct: 671 FASVLSACSHSGLTVTGLQLFHSMVRDFGIAPQLTHYGCMVDLLGRGGHFSEAIAFINSM 730

Query: 518 LEGMGPNIWRALLSGC 533
                 +IWRALLS C
Sbjct: 731 PIEPDASIWRALLSSC 746



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 167/608 (27%), Positives = 290/608 (47%), Gaps = 51/608 (8%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + L+  Y K G + EA  +F E+PE+++VSW+ +I GY     +++++  F  M  +GL 
Sbjct: 99  TALVDFYCKCGLVAEASKVFVEMPERDLVSWNALISGYVGCLCYKEAVLLFVEMKKAGLT 158

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL-ESDLFEG------------------ 109
           PNS T+V +L+A   +  L L + IHG  ++ GL + D + G                  
Sbjct: 159 PNSRTVVALLLACGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALVGFYMRFDAVLSHRV 218

Query: 110 -----LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
                ++N  +VS NAI+ GF+N     +A+ L++     G+  +AVTML VI+ C   G
Sbjct: 219 FSLMLVRN--IVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQACAEYG 276

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
              L   +H L IK  LI D+ + N++L+MYS    L+++  +F  +   D   W  M+ 
Sbjct: 277 CLRLGMQLHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVPTSDAALWNSMIS 336

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLK-RGKQLHAQVVLGGLQ 283
            ++ F +  +A+ +F +MR  RI  D   +  ++S+   L D    G+ LHA  +  G++
Sbjct: 337 SYIGFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLCNDLNDGSIWGRGLHAHAMKSGIE 396

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
            +  L N++++MY K   + +++ VF ++    ++SW  +IS + Q+    +A   F+ M
Sbjct: 397 LDAYLGNALLSMYVKHNQITAAQYVFEKMRGLDVISWNTMISAFAQSMFRAKAFELFLMM 456

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
            + +    +S T+VS+L    + + L     +HG A + G     S+   L   Y  CG+
Sbjct: 457 CESEI-KFNSYTIVSLLAFCKDGSDLVFGRSIHGFAIKNGLEINTSLNTSLTEMYINCGD 515

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
              A  +F      RD+VSWN++I  Y  N +   AL L++ M    E P+S T ++IL 
Sbjct: 516 ERAATNMFTRCP-QRDLVSWNSLISSYIKNDNAGKALLLFNHMISELE-PNSVTIINILT 573

Query: 464 ACGHAGLTNDGLVIFNQMI-EENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMG 522
           +C        G  +       E  ++         + + AR G L  A  +    L+   
Sbjct: 574 SCTQLAHLPLGQCLHAYTTRREVSLEMDASLANAFITMYARCGKLQYAEKIFCT-LQTRS 632

Query: 523 PNIWRALLSGCVLHVGRFQD-----AEALRSGSQKKGI-------------IKIPGISFL 564
              W A+++G  +H GR +D     A+ L  G +   +             + + G+   
Sbjct: 633 IVSWNAMITGYGMH-GRGRDATLAFAQMLDDGFKPNNVSFASVLSACSHSGLTVTGLQLF 691

Query: 565 NSTSRDFG 572
           +S  RDFG
Sbjct: 692 HSMVRDFG 699



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 132/452 (29%), Positives = 218/452 (48%), Gaps = 32/452 (7%)

Query: 40  SIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLM-- 97
           SI+ H   +   H   +  ++ M   G+ P+S TM  VL A   L  +     IH  +  
Sbjct: 30  SIIKHHTKLKNDH-AILSTYTQMESLGITPDSATMPLVLKACGRLNAIGNGVRIHSFIRG 88

Query: 98  -----------------VKFGL---ESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLL 137
                             K GL    S +F  +    LVS NA+++G++    +++AVLL
Sbjct: 89  LDLINDVRVGTALVDFYCKCGLVAEASKVFVEMPERDLVSWNALISGYVGCLCYKEAVLL 148

Query: 138 FNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLI-LDVSVNNSVLDMYS 196
           F   + +GL PN+ T++ ++  C  +    L + IHG  ++ GL  +D  V  +++  Y 
Sbjct: 149 FVEMKKAGLTPNSRTVVALLLACGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALVGFY- 207

Query: 197 CLMDLDAAI--QIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVAL 254
             M  DA +  ++F  M  ++++SW  ++  F++      ALK++  M    I  D V +
Sbjct: 208 --MRFDAVLSHRVFSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAVTM 265

Query: 255 LNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE 314
           L +I   A  G L+ G QLH   +   L ++L + N+++ MYS  G L+SS ++FN +  
Sbjct: 266 LVVIQACAEYGCLRLGMQLHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVPT 325

Query: 315 KSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQ 374
                W ++IS Y+  G   EA+  FIKMR E+    D  T+  +L+   +L    I  +
Sbjct: 326 SDAALWNSMISSYIGFGFHAEAIALFIKMRLERIKE-DVRTIAIMLSLCNDLNDGSIWGR 384

Query: 375 -LHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVN 433
            LH  A ++G      + N L+S Y K   +  A  VFE+M  L DV+SWNT+I  +  +
Sbjct: 385 GLHAHAMKSGIELDAYLGNALLSMYVKHNQITAAQYVFEKMRGL-DVISWNTMISAFAQS 443

Query: 434 GHGETALALYHKMTETGEVPDSSTYLSILNAC 465
                A  L+  M E+    +S T +S+L  C
Sbjct: 444 MFRAKAFELFLMMCESEIKFNSYTIVSLLAFC 475



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 124/533 (23%), Positives = 238/533 (44%), Gaps = 38/533 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + LL+ Y  +G ++ +  LF+ +P  +   W+ +I  Y   GFH +++  F  M 
Sbjct: 296 DLFILNALLNMYSDNGSLESSWALFNAVPTSDAALWNSMISSYIGFGFHAEAIALFIKMR 355

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLEL-ARSIHGLMVKFGLESD----------------- 105
           L  +  +  T+  +L     L +  +  R +H   +K G+E D                 
Sbjct: 356 LERIKEDVRTIAIMLSLCNDLNDGSIWGRGLHAHAMKSGIELDAYLGNALLSMYVKHNQI 415

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +FE ++   ++S N +++ F  +    +A  LF     S +  N+ T+++++  C
Sbjct: 416 TAAQYVFEKMRGLDVISWNTMISAFAQSMFRAKAFELFLMMCESEIKFNSYTIVSLLAFC 475

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
                      IHG  IK GL ++ S+N S+ +MY    D  AA  +F     +D++SW 
Sbjct: 476 KDGSDLVFGRSIHGFAIKNGLEINTSLNTSLTEMYINCGDERAATNMFTRCPQRDLVSWN 535

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++  ++  + AG AL +F  M  S +  ++V ++N+++    L  L  G+ LHA     
Sbjct: 536 SLISSYIKNDNAGKALLLFNHM-ISELEPNSVTIINILTSCTQLAHLPLGQCLHAYTTRR 594

Query: 281 --GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
              L+ +  L+N+ I MY++CG L  +  +F  +  +S+VSW A+I+GY  +G  R+A  
Sbjct: 595 EVSLEMDASLANAFITMYARCGKLQYAEKIFCTLQTRSIVSWNAMITGYGMHGRGRDATL 654

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQL-HGIAFEAGFPRYRSVQNCLISS 397
            F +M  +     ++++  S+L+A          LQL H +  + G     +   C++  
Sbjct: 655 AFAQMLDDGFKP-NNVSFASVLSACSHSGLTVTGLQLFHSMVRDFGIAPQLTHYGCMVDL 713

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
             + G+   A      M    D   W  ++    +  + +    ++ K+ E  E  +   
Sbjct: 714 LGRGGHFSEAIAFINSMPIEPDASIWRALLSSCQIKSNNKLLETIFGKLVEL-EPSNPGN 772

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKP---------SQEHYGCVVDLL 501
           ++ + N    AGL ++ + I   + E    KP         +Q H+    D+L
Sbjct: 773 FILLSNIYAAAGLWSEVVQIRKWLRERGLGKPPGTSWIVIGNQVHHFTATDVL 825



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 167/332 (50%), Gaps = 9/332 (2%)

Query: 145 GLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAA 204
           G+ P++ TM  V++ C  L +      IH     L LI DV V  +++D Y     +  A
Sbjct: 55  GITPDSATMPLVLKACGRLNAIGNGVRIHSFIRGLDLINDVRVGTALVDFYCKCGLVAEA 114

Query: 205 IQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAIL 264
            ++F EM  +D++SW  ++  +V      +A+ +F EM+K+ +  ++  ++ L+     +
Sbjct: 115 SKVFVEMPERDLVSWNALISGYVGCLCYKEAVLLFVEMKKAGLTPNSRTVVALLLACGEM 174

Query: 265 GDLKRGKQLHAQVVLGGL-QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAI 323
            +L+ G+++H   +  GL   +  +  +++  Y +   + S R VF+ +  +++VSW AI
Sbjct: 175 LELRLGQEIHGYCLRNGLFDMDAYVGTALVGFYMRFDAVLSHR-VFSLMLVRNIVSWNAI 233

Query: 324 ISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG 383
           I+G++  G   +AL  +  M  E     D++T++ ++ A  E   L + +QLH +A +  
Sbjct: 234 ITGFLNVGDCAKALKLYSSMLIEGI-KFDAVTMLVVIQACAEYGCLRLGMQLHQLAIKFN 292

Query: 384 FPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGY-GVNGHGETALAL 442
                 + N L++ YS  G+++ ++ +F  +    D   WN++I  Y G   H E A+AL
Sbjct: 293 LINDLFILNALLNMYSDNGSLESSWALFNAVP-TSDAALWNSMISSYIGFGFHAE-AIAL 350

Query: 443 YHKMTETGEVPDSSTYLSILNACGHAGLTNDG 474
           + KM       D  T   +L+ C      NDG
Sbjct: 351 FIKMRLERIKEDVRTIAIMLSLCND---LNDG 379



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 129/253 (50%), Gaps = 4/253 (1%)

Query: 236 LKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAM 295
           L  + +M    I  D+  +  ++     L  +  G ++H+ +    L +++R+  +++  
Sbjct: 45  LSTYTQMESLGITPDSATMPLVLKACGRLNAIGNGVRIHSFIRGLDLINDVRVGTALVDF 104

Query: 296 YSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSIT 355
           Y KCG +  +  VF ++ E+ LVSW A+ISGYV   C +EA+  F++M++    + +S T
Sbjct: 105 YCKCGLVAEASKVFVEMPERDLVSWNALISGYVGCLCYKEAVLLFVEMKKAGL-TPNSRT 163

Query: 356 LVSILTASGELAALEICLQLHGIAFEAG-FPRYRSVQNCLISSYSKCGNVDLAYIVFEEM 414
           +V++L A GE+  L +  ++HG     G F     V   L+  Y +   V L++ VF  M
Sbjct: 164 VVALLLACGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALVGFYMRFDAV-LSHRVFSLM 222

Query: 415 GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDG 474
             +R++VSWN II G+   G    AL LY  M   G   D+ T L ++ AC   G    G
Sbjct: 223 -LVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQACAEYGCLRLG 281

Query: 475 LVIFNQMIEENKV 487
           + +    I+ N +
Sbjct: 282 MQLHQLAIKFNLI 294



 Score = 39.7 bits (91), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 12/117 (10%)

Query: 423 WNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFN--- 479
           WN+II  +    +    L+ Y +M   G  PDS+T   +L ACG      +G+ I +   
Sbjct: 28  WNSIIKHHTKLKNDHAILSTYTQMESLGITPDSATMPLVLKACGRLNAIGNGVRIHSFIR 87

Query: 480 --QMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCV 534
              +I + +V  +      +VD   + G +++AS +  ++ E    + W AL+SG V
Sbjct: 88  GLDLINDVRVGTA------LVDFYCKCGLVAEASKVFVEMPERDLVS-WNALISGYV 137


>gi|222629009|gb|EEE61141.1| hypothetical protein OsJ_15084 [Oryza sativa Japonica Group]
          Length = 897

 Score =  251 bits (640), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 178/563 (31%), Positives = 289/563 (51%), Gaps = 42/563 (7%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS-- 65
           +S L+  Y + G +++A  LFDE+PE++VV+W+ VI G   NG   + +     M+ S  
Sbjct: 148 ASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAG 207

Query: 66  --GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL---------------ESD--- 105
             G  PNS TM   L A   L  L +   +HG  VK G+               + D   
Sbjct: 208 DGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTE 267

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               LF  L    LVS  +++  +      ++AV LF     SGL P+ V +  ++ G  
Sbjct: 268 DARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAG-- 325

Query: 162 ALGSRALC---ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            LG+ A     +  H   ++      V + N+++ MY+    +D A  +FR +  +D  S
Sbjct: 326 -LGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDS 384

Query: 219 WTRMMGLFVDFEYAGDALKIFREMR---KSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
           W+ M+  +         L+++REM+   K     DT +L+++IS  + LG L+ G+  H 
Sbjct: 385 WSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSAHC 444

Query: 276 QVV--LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA 333
             +  L G  S +  +N++I+MY +CG+ D +R +F  +  K +V+W+A+IS Y   G +
Sbjct: 445 YSIKHLAGENSSV--ANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHS 502

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC 393
           ++AL  + +M  E     +S TLVS++++   LAALE    +H    + G     S+   
Sbjct: 503 KDALLLYDQMLTEGVKP-NSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTA 561

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           L+  Y KCG + +A  +F+ M   RDVV+WN +I GYG++G    AL L+  M      P
Sbjct: 562 LVDMYMKCGQLGIARKMFDSM-LERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKP 620

Query: 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL 513
           +S T+L+IL+AC HAGL + G  +F +M EE  ++P+ +HY C+VDLL ++G L +A  +
Sbjct: 621 NSLTFLAILSACCHAGLVDKGRELFTRM-EEYSLEPNLKHYACMVDLLGKSGHLQEAEDV 679

Query: 514 AGKLLEGMGPNIWRALLSGCVLH 536
              +       IW  LL  C +H
Sbjct: 680 VSAMPIEPDGGIWGTLLGACKMH 702



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 158/596 (26%), Positives = 283/596 (47%), Gaps = 46/596 (7%)

Query: 5   PYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML 64
           P  ++KL+S Y  +G    A   F   P  +   W+ ++           ++ A   M  
Sbjct: 41  PDFAAKLVSAYSSAGLPALAALAFAASPCPDAFLWNSLLRSRHRASDFASTLSAHRRMRA 100

Query: 65  SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL-ESD------------------ 105
           SG  P+ FT   V  AAA L  L +  ++H   V+FGL E D                  
Sbjct: 101 SGARPSRFTAPLVASAAAELGALPVGAAVHAYSVRFGLLEGDGSVAVASSLVYMYARCGS 160

Query: 106 ------LFEGLKNPYLVSCNAIVAGFI-NNKLFQQAVLLFNFFRGSG---LVPNAVTMLT 155
                 LF+ +    +V+  A+++G + N +  +    L    R +G     PN+ TM +
Sbjct: 161 VRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGDGGARPNSRTMES 220

Query: 156 VIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYS-CLMDLDAAIQIFREMECK 214
            +  C  LG  ++   +HG  +K G+    SV +S+  MY+ C    DA I +F E+  K
Sbjct: 221 GLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTEDARI-LFPELPEK 279

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
           D++SWT ++G +    +A  A+++F  M +S +  D V +  L++       ++ GK  H
Sbjct: 280 DLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGLGNDAKVRGGKTFH 339

Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
           A +V       + + N++I+MY+KC  +D + +VF  + ++   SW++++  Y + G   
Sbjct: 340 AAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYCKAGLDL 399

Query: 335 EALNQFIKMRQEKTDSV--DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN 392
           + L  + +M+    D    D+ +L+SI+++   L  L +    H  + +       SV N
Sbjct: 400 KCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSAHCYSIKHLAGENSSVAN 459

Query: 393 CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV 452
            LIS Y +CGN D+A  +F  M   +DVV+W+ +I  Y   GH + AL LY +M   G  
Sbjct: 460 ALISMYGRCGNFDVARKIF-GMVKTKDVVTWSALISSYSHLGHSKDALLLYDQMLTEGVK 518

Query: 453 PDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASG 512
           P+S+T +S++++C +      G +I +  +++  ++        +VD+  + G L    G
Sbjct: 519 PNSATLVSVISSCANLAALEHGELIHSH-VKDVGLECDLSICTALVDMYMKCGQL----G 573

Query: 513 LAGKLLEGMGPN---IWRALLSGCVLHVGRFQDAEALRSGS-QKKGIIKIPGISFL 564
           +A K+ + M       W  ++SG  +H    Q   AL+  S  ++G +K   ++FL
Sbjct: 574 IARKMFDSMLERDVVTWNVMISGYGMHGEAIQ---ALKLFSMMERGNVKPNSLTFL 626



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 126/515 (24%), Positives = 238/515 (46%), Gaps = 36/515 (6%)

Query: 5   PYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML 64
           P   S L S Y K    ++A  LF E+PEK++VSW+ +I  Y   G  EK+++ F  M  
Sbjct: 250 PSVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEE 309

Query: 65  SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK--FG--------------------L 102
           SGL P+   +  +L        +   ++ H  +V+  FG                    +
Sbjct: 310 SGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDI 369

Query: 103 ESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLF---NFFRGSGLVPNAVTMLTVIRG 159
            + +F  L      S +++V  +    L  + + L+    F        +  +++++I  
Sbjct: 370 AATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISS 429

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C  LG   L +  H  +IK     + SV N+++ MY    + D A +IF  ++ KDV++W
Sbjct: 430 CSRLGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTW 489

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           + ++  +    ++ DAL ++ +M    +  ++  L+++IS  A L  L+ G+ +H+ V  
Sbjct: 490 SALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKD 549

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            GL+ +L +  +++ MY KCG L  +R +F+ + E+ +V+W  +ISGY  +G A +AL  
Sbjct: 550 VGLECDLSICTALVDMYMKCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKL 609

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAAL----EICLQLHGIAFEAGFPRYRSVQNCLI 395
           F  M +      +S+T ++IL+A      +    E+  ++   + E     Y     C++
Sbjct: 610 FSMMERGNVKP-NSLTFLAILSACCHAGLVDKGRELFTRMEEYSLEPNLKHY----ACMV 664

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
               K G++  A  V   M    D   W T++    ++ + E  L +  K   +    D 
Sbjct: 665 DLLGKSGHLQEAEDVVSAMPIEPDGGIWGTLLGACKMHDNFEMGLRVAKKAFASDPEND- 723

Query: 456 STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPS 490
             Y+ + N+ G A   N+ +     M++ + V+ S
Sbjct: 724 GYYILMSNSYGSAEKWNE-IEKLRDMMKNHGVEKS 757



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 83/201 (41%), Gaps = 9/201 (4%)

Query: 273 LHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC 332
           LHA  V  GL      +  +++ YS  G    +   F          W +++    +   
Sbjct: 28  LHALAVTSGLSPRPDFAAKLVSAYSSAGLPALAALAFAASPCPDAFLWNSLLRSRHRASD 87

Query: 333 AREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPR---YRS 389
               L+   +MR          T   + +A+ EL AL +   +H  +   G        +
Sbjct: 88  FASTLSAHRRMRASGARP-SRFTAPLVASAAAELGALPVGAAVHAYSVRFGLLEGDGSVA 146

Query: 390 VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
           V + L+  Y++CG+V  A  +F+EM   RDVV+W  +I G   NG     L+   +M  +
Sbjct: 147 VASSLVYMYARCGSVRDAVRLFDEMP-ERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRS 205

Query: 450 ----GEVPDSSTYLSILNACG 466
               G  P+S T  S L ACG
Sbjct: 206 AGDGGARPNSRTMESGLEACG 226


>gi|357450559|ref|XP_003595556.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484604|gb|AES65807.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 1040

 Score =  251 bits (640), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 160/549 (29%), Positives = 290/549 (52%), Gaps = 21/549 (3%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           SSKL+ +Y   G +  +  +F      + + ++  +    + G +EK++  +  M+   +
Sbjct: 56  SSKLIDSYSNFGLLHFSHKIFSFTENPDSIIYNAFLRNLFMFGEYEKTLFLYKEMVQKSM 115

Query: 68  LPNSFTMVGVLVAAAGLQNLE-LARSIHGLMVKFGLES---------DLFEGLKNPYLVS 117
            P+      VL +   + + + L    HG +VK G+++         +L+  L    LV 
Sbjct: 116 CPDEDCCFSVLKSLFYVFHEKGLIMMAHGHVVKLGMDAFDLVGNTLIELYGFLNGNGLVE 175

Query: 118 CNAIVA-GFINNKLFQ--------QAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
             ++    F NN +++        ++  LF   R   + PN+VT++ ++R  V   S  +
Sbjct: 176 RKSVTKLNFWNNLIYEAYESGKIVESFELFCRMRNENVQPNSVTLINLLRATVESNSLKI 235

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
            +++H L +   L  +++VN ++L MY+ L  L  A  +F +M  KDV+ W  M+ ++  
Sbjct: 236 GKVLHSLVVASNLCKELTVNTALLSMYAKLDSLKDARLMFEKMPEKDVVVWNIMISVYSG 295

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
                ++L++   M +S I  D    +  IS    L  ++ GKQLHAQV+  G   ++ +
Sbjct: 296 SGCPKESLELVYCMVRSGIRPDMFTAIPAISSITKLKSIEWGKQLHAQVIRNGSDYQVSV 355

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
            NS++ MYS C DL+S+R +F  I ++++VSW+A+I GY  +    EAL+ FI+M+   T
Sbjct: 356 HNSLVDMYSTCADLNSARKIFGLIKDRTVVSWSAMIKGYAMHDNCLEALSLFIEMKLSGT 415

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
             VD + +++IL A  ++ AL     LHG + +      +S++  L++SY+KCG +++A 
Sbjct: 416 -KVDLVIVINILPAFAKIGALHYVGYLHGYSLKTNLDSLKSLKTSLLNSYAKCGCIEMAR 474

Query: 409 IVF-EEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
            +F EE   L+D+V+WN++I  Y  +G       LY+++  +   PD  T+L +L AC +
Sbjct: 475 KLFNEEKSSLKDIVAWNSMITAYSNHGEWFQCFELYNQIKLSIVKPDHVTFLGMLTACVN 534

Query: 468 AGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWR 527
           +GL + G  IF +M++    +PS+EH  C+VDLL RAG + +A  +           ++ 
Sbjct: 535 SGLVDKGKEIFKEMVDIYGFQPSKEHNACMVDLLGRAGKIDEARKIIETNQLNSDARVYG 594

Query: 528 ALLSGCVLH 536
            LLS C +H
Sbjct: 595 PLLSACKMH 603



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 91/371 (24%), Positives = 170/371 (45%), Gaps = 19/371 (5%)

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM-GLFVDFE 230
           IH      GL  + S+++ ++D YS    L  + +IF   E  D I +   +  LF+  E
Sbjct: 40  IHARFFLHGLHQNSSLSSKLIDSYSNFGLLHFSHKIFSFTENPDSIIYNAFLRNLFMFGE 99

Query: 231 YAGDALKIFREMRKSRIICDTVALLNLI-SVNAILGDLKRGKQLHAQVVLGGLQSELRLS 289
           Y    L +++EM +  +  D     +++ S+  +  +       H  VV  G+ +   + 
Sbjct: 100 YE-KTLFLYKEMVQKSMCPDEDCCFSVLKSLFYVFHEKGLIMMAHGHVVKLGMDAFDLVG 158

Query: 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVS----WTAIISGYVQNGCAREALNQFIKMRQ 345
           N++I +Y   G L+      N + E+  V+    W  +I    ++G   E+   F +MR 
Sbjct: 159 NTLIELY---GFLNG-----NGLVERKSVTKLNFWNNLIYEAYESGKIVESFELFCRMRN 210

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
           E     +S+TL+++L A+ E  +L+I   LH +   +   +  +V   L+S Y+K  ++ 
Sbjct: 211 ENVQP-NSVTLINLLRATVESNSLKIGKVLHSLVVASNLCKELTVNTALLSMYAKLDSLK 269

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            A ++FE+M   +DVV WN +I  Y  +G  + +L L + M  +G  PD  T +  +++ 
Sbjct: 270 DARLMFEKMP-EKDVVVWNIMISVYSGSGCPKESLELVYCMVRSGIRPDMFTAIPAISSI 328

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI 525
                   G  +  Q+I          H   +VD+ +    L+ A  + G L++      
Sbjct: 329 TKLKSIEWGKQLHAQVIRNGSDYQVSVH-NSLVDMYSTCADLNSARKIFG-LIKDRTVVS 386

Query: 526 WRALLSGCVLH 536
           W A++ G  +H
Sbjct: 387 WSAMIKGYAMH 397



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 74/331 (22%), Positives = 132/331 (39%), Gaps = 25/331 (7%)

Query: 240 REMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKC 299
           +  + +R    T ++LNL +    L      +Q+HA+  L GL     LS+ +I  YS  
Sbjct: 13  KPFQTTRFFNTTSSILNLCTKPQYL------QQIHARFFLHGLHQNSSLSSKLIDSYSNF 66

Query: 300 GDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSI 359
           G L  S  +F+       + + A +      G   + L  + +M Q K+   D     S+
Sbjct: 67  GLLHFSHKIFSFTENPDSIIYNAFLRNLFMFGEYEKTLFLYKEMVQ-KSMCPDEDCCFSV 125

Query: 360 LTASGELAALE-ICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLR 418
           L +   +   + + +  HG   + G   +  V N LI  Y       L      E   + 
Sbjct: 126 LKSLFYVFHEKGLIMMAHGHVVKLGMDAFDLVGNTLIELYGFLNGNGLV-----ERKSVT 180

Query: 419 DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIF 478
            +  WN +IY    +G    +  L+ +M      P+S T +++L A   +     G V+ 
Sbjct: 181 KLNFWNNLIYEAYESGKIVESFELFCRMRNENVQPNSVTLINLLRATVESNSLKIGKVLH 240

Query: 479 NQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVG 538
           + ++  N  K    +   ++ + A+   L DA  +  K+ E     +W  ++S   ++ G
Sbjct: 241 SLVVASNLCKELTVNTA-LLSMYAKLDSLKDARLMFEKMPEK-DVVVWNIMIS---VYSG 295

Query: 539 RFQDAEAL-------RSGSQKKGIIKIPGIS 562
                E+L       RSG +      IP IS
Sbjct: 296 SGCPKESLELVYCMVRSGIRPDMFTAIPAIS 326


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 168/567 (29%), Positives = 277/567 (48%), Gaps = 58/567 (10%)

Query: 55  SMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKN 112
           ++ AF  M  +G  P   T   +L   A   +L   R++H  +   G++S+      L N
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 113 PYL--------------------VSCNAIVAGFINNKLFQQAV-LLFNFFRGSGLVPNAV 151
            Y                     V+ NA+VAG+  N L + A+ ++       G  P+++
Sbjct: 103 MYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSI 162

Query: 152 TMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM 211
           T+++V+  C    + A C   H   I+ GL   V+V  ++LD Y    D+ AA  +F  M
Sbjct: 163 TLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWM 222

Query: 212 ECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGK 271
             K+ +SW  M+  +     + +AL +F  M +  +    V++L  +     LG L  G 
Sbjct: 223 PTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGM 282

Query: 272 QLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNG 331
           ++H  +V  GL S + + N++I MYSKC  +D +  VF+++  ++ VSW A+I G  QNG
Sbjct: 283 RVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNG 342

Query: 332 CAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ 391
           C+ +A+  F +M+ E     DS TLVS++ A  +++       +HG +      +   V 
Sbjct: 343 CSEDAVRLFTRMQLENVKP-DSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVL 401

Query: 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE 451
             LI  Y+KCG V++A I+F      R V++WN +I+GYG +G G+ A+ L+ +M   G 
Sbjct: 402 TALIDMYAKCGRVNIARILFNS-ARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGI 460

Query: 452 VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDAS 511
           VP+ +T+LS+L+AC HAGL ++G   F  M E+  ++P  EHYG +VDLL RAG L +A 
Sbjct: 461 VPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAW 520

Query: 512 GLAGKLLEGMGPNIWRALLSGCVLH---------------------------------VG 538
               K+    G +++ A+L  C LH                                   
Sbjct: 521 AFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANAS 580

Query: 539 RFQDAEALRSGSQKKGIIKIPGISFLN 565
            ++D   +R+  +K G+ K PG S + 
Sbjct: 581 MWKDVARVRTAMEKNGLQKTPGWSIIQ 607



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 156/328 (47%), Gaps = 23/328 (7%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ +L  Y K G I+ A  +FD +P KN VSW+ +I GY+ NG   +++  F+ M+  G+
Sbjct: 199 ATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGV 258

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
                +++  L A   L  L+    +H L+V+ GL+S+                      
Sbjct: 259 DVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASH 318

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F+ L     VS NA++ G   N   + AV LF   +   + P++ T+++VI     +  
Sbjct: 319 VFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISD 378

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
                 IHG +I+L L  DV V  +++DMY+    ++ A  +F     + VI+W  M+  
Sbjct: 379 PLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHG 438

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG-GLQS 284
           +    +   A+++F EM+   I+ +    L+++S  +  G +  G++    +    GL+ 
Sbjct: 439 YGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEP 498

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQI 312
            +    +++ +  + G LD + +   ++
Sbjct: 499 GMEHYGTMVDLLGRAGKLDEAWAFIQKM 526



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 46/77 (59%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + L+  Y K G++  A  LF+   E++V++W+ +IHGY  +GF + +++ F  M 
Sbjct: 397 DVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMK 456

Query: 64  LSGLLPNSFTMVGVLVA 80
             G++PN  T + VL A
Sbjct: 457 SIGIVPNETTFLSVLSA 473


>gi|38567725|emb|CAE76014.1| B1358B12.23 [Oryza sativa Japonica Group]
          Length = 918

 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 178/563 (31%), Positives = 289/563 (51%), Gaps = 42/563 (7%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS-- 65
           +S L+  Y + G +++A  LFDE+PE++VV+W+ VI G   NG   + +     M+ S  
Sbjct: 148 ASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAG 207

Query: 66  --GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL---------------ESD--- 105
             G  PNS TM   L A   L  L +   +HG  VK G+               + D   
Sbjct: 208 DGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTE 267

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               LF  L    LVS  +++  +      ++AV LF     SGL P+ V +  ++ G  
Sbjct: 268 DARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAG-- 325

Query: 162 ALGSRALC---ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            LG+ A     +  H   ++      V + N+++ MY+    +D A  +FR +  +D  S
Sbjct: 326 -LGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDS 384

Query: 219 WTRMMGLFVDFEYAGDALKIFREMR---KSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
           W+ M+  +         L+++REM+   K     DT +L+++IS  + LG L+ G+  H 
Sbjct: 385 WSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSAHC 444

Query: 276 QVV--LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA 333
             +  L G  S +  +N++I+MY +CG+ D +R +F  +  K +V+W+A+IS Y   G +
Sbjct: 445 YSIKHLAGENSSV--ANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHS 502

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC 393
           ++AL  + +M  E     +S TLVS++++   LAALE    +H    + G     S+   
Sbjct: 503 KDALLLYDQMLTEGVKP-NSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTA 561

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           L+  Y KCG + +A  +F+ M   RDVV+WN +I GYG++G    AL L+  M      P
Sbjct: 562 LVDMYMKCGQLGIARKMFDSM-LERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKP 620

Query: 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL 513
           +S T+L+IL+AC HAGL + G  +F +M EE  ++P+ +HY C+VDLL ++G L +A  +
Sbjct: 621 NSLTFLAILSACCHAGLVDKGRELFTRM-EEYSLEPNLKHYACMVDLLGKSGHLQEAEDV 679

Query: 514 AGKLLEGMGPNIWRALLSGCVLH 536
              +       IW  LL  C +H
Sbjct: 680 VSAMPIEPDGGIWGTLLGACKMH 702



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 158/596 (26%), Positives = 283/596 (47%), Gaps = 46/596 (7%)

Query: 5   PYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML 64
           P  ++KL+S Y  +G    A   F   P  +   W+ ++           ++ A   M  
Sbjct: 41  PDFAAKLVSAYSSAGLPALAALAFAASPCPDAFLWNSLLRSRHRASDFASTLSAHRRMRA 100

Query: 65  SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL-ESD------------------ 105
           SG  P+ FT   V  AAA L  L +  ++H   V+FGL E D                  
Sbjct: 101 SGARPSRFTAPLVASAAAELGALPVGAAVHAYSVRFGLLEGDGSVAVASSLVYMYARCGS 160

Query: 106 ------LFEGLKNPYLVSCNAIVAGFI-NNKLFQQAVLLFNFFRGSG---LVPNAVTMLT 155
                 LF+ +    +V+  A+++G + N +  +    L    R +G     PN+ TM +
Sbjct: 161 VRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGDGGARPNSRTMES 220

Query: 156 VIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYS-CLMDLDAAIQIFREMECK 214
            +  C  LG  ++   +HG  +K G+    SV +S+  MY+ C    DA I +F E+  K
Sbjct: 221 GLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTEDARI-LFPELPEK 279

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
           D++SWT ++G +    +A  A+++F  M +S +  D V +  L++       ++ GK  H
Sbjct: 280 DLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGLGNDAKVRGGKTFH 339

Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
           A +V       + + N++I+MY+KC  +D + +VF  + ++   SW++++  Y + G   
Sbjct: 340 AAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYCKAGLDL 399

Query: 335 EALNQFIKMRQEKTDSV--DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN 392
           + L  + +M+    D    D+ +L+SI+++   L  L +    H  + +       SV N
Sbjct: 400 KCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSAHCYSIKHLAGENSSVAN 459

Query: 393 CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV 452
            LIS Y +CGN D+A  +F  M   +DVV+W+ +I  Y   GH + AL LY +M   G  
Sbjct: 460 ALISMYGRCGNFDVARKIF-GMVKTKDVVTWSALISSYSHLGHSKDALLLYDQMLTEGVK 518

Query: 453 PDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASG 512
           P+S+T +S++++C +      G +I +  +++  ++        +VD+  + G L    G
Sbjct: 519 PNSATLVSVISSCANLAALEHGELIHSH-VKDVGLECDLSICTALVDMYMKCGQL----G 573

Query: 513 LAGKLLEGMGPN---IWRALLSGCVLHVGRFQDAEALRSGS-QKKGIIKIPGISFL 564
           +A K+ + M       W  ++SG  +H    Q   AL+  S  ++G +K   ++FL
Sbjct: 574 IARKMFDSMLERDVVTWNVMISGYGMHGEAIQ---ALKLFSMMERGNVKPNSLTFL 626



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 126/515 (24%), Positives = 238/515 (46%), Gaps = 36/515 (6%)

Query: 5   PYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML 64
           P   S L S Y K    ++A  LF E+PEK++VSW+ +I  Y   G  EK+++ F  M  
Sbjct: 250 PSVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEE 309

Query: 65  SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK--FG--------------------L 102
           SGL P+   +  +L        +   ++ H  +V+  FG                    +
Sbjct: 310 SGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDI 369

Query: 103 ESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLF---NFFRGSGLVPNAVTMLTVIRG 159
            + +F  L      S +++V  +    L  + + L+    F        +  +++++I  
Sbjct: 370 AATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISS 429

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C  LG   L +  H  +IK     + SV N+++ MY    + D A +IF  ++ KDV++W
Sbjct: 430 CSRLGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTW 489

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           + ++  +    ++ DAL ++ +M    +  ++  L+++IS  A L  L+ G+ +H+ V  
Sbjct: 490 SALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKD 549

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            GL+ +L +  +++ MY KCG L  +R +F+ + E+ +V+W  +ISGY  +G A +AL  
Sbjct: 550 VGLECDLSICTALVDMYMKCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKL 609

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAAL----EICLQLHGIAFEAGFPRYRSVQNCLI 395
           F  M +      +S+T ++IL+A      +    E+  ++   + E     Y     C++
Sbjct: 610 FSMMERGNVKP-NSLTFLAILSACCHAGLVDKGRELFTRMEEYSLEPNLKHY----ACMV 664

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
               K G++  A  V   M    D   W T++    ++ + E  L +  K   +    D 
Sbjct: 665 DLLGKSGHLQEAEDVVSAMPIEPDGGIWGTLLGACKMHDNFEMGLRVAKKAFASDPEND- 723

Query: 456 STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPS 490
             Y+ + N+ G A   N+ +     M++ + V+ S
Sbjct: 724 GYYILMSNSYGSAEKWNE-IEKLRDMMKNHGVEKS 757



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 83/201 (41%), Gaps = 9/201 (4%)

Query: 273 LHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC 332
           LHA  V  GL      +  +++ YS  G    +   F          W +++    +   
Sbjct: 28  LHALAVTSGLSPRPDFAAKLVSAYSSAGLPALAALAFAASPCPDAFLWNSLLRSRHRASD 87

Query: 333 AREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPR---YRS 389
               L+   +MR          T   + +A+ EL AL +   +H  +   G        +
Sbjct: 88  FASTLSAHRRMRASGARP-SRFTAPLVASAAAELGALPVGAAVHAYSVRFGLLEGDGSVA 146

Query: 390 VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
           V + L+  Y++CG+V  A  +F+EM   RDVV+W  +I G   NG     L+   +M  +
Sbjct: 147 VASSLVYMYARCGSVRDAVRLFDEMP-ERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRS 205

Query: 450 ----GEVPDSSTYLSILNACG 466
               G  P+S T  S L ACG
Sbjct: 206 AGDGGARPNSRTMESGLEACG 226


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 146/443 (32%), Positives = 243/443 (54%), Gaps = 5/443 (1%)

Query: 98  VKFGLESD---LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTML 154
           ++FG  S+   +F+ +    + + NA+++G   N    +AV LF    G G+  + VT+ 
Sbjct: 114 LRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAGDTVTVS 173

Query: 155 TVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
           +V+  CV LG + L  ++H   +K GL  ++ V N+++D+Y  L  L+ A  +F  MEC+
Sbjct: 174 SVLPMCVLLGDQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECR 233

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
           D+++W  ++           ALK+F+ MR S +  D + L++L S  A  GD +  K LH
Sbjct: 234 DLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLH 293

Query: 275 AQVVLGGLQ-SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA 333
             V+  G    ++   N+I+ MY+K  ++++++ +F+ +  +  VSW  +I+GY+QNG A
Sbjct: 294 CYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLA 353

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC 393
            EA+ ++  M++ +       T VS+L A   L AL+  +++H ++ + G      V  C
Sbjct: 354 NEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSIKIGLNVDVYVGTC 413

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           LI  Y+KCG +  A ++FE+M   R    WN II G GV+GHG  AL L+ +M + G  P
Sbjct: 414 LIDLYAKCGKLAEAMLLFEKMP-RRSTGPWNAIISGLGVHGHGAEALTLFSRMQQEGIKP 472

Query: 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL 513
           D  T++S+L AC HAGL + G   F+ M     + P  +HY C+ D+L RAG L +A   
Sbjct: 473 DHVTFVSLLAACSHAGLVDQGRSFFDVMQVTYDIVPIAKHYACMADMLGRAGQLDEAFNF 532

Query: 514 AGKLLEGMGPNIWRALLSGCVLH 536
              +       +W ALL  C +H
Sbjct: 533 IQNMPIKPDSAVWGALLGACRIH 555



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 112/460 (24%), Positives = 224/460 (48%), Gaps = 32/460 (6%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           + S  L+  Y + G+I EA  +FDE+ E++V +W+ ++ G   N    +++  F  M+  
Sbjct: 104 FTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGE 163

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL------------------- 106
           G+  ++ T+  VL     L +  LA  +H   VK GL+ +L                   
Sbjct: 164 GVAGDTVTVSSVLPMCVLLGDQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEA 223

Query: 107 ---FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
              F G++   LV+ N+I++G         A+ +F   RGSG+ P+ +T++++       
Sbjct: 224 QCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQG 283

Query: 164 GSRALCELIHGLTIKLGL-ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
           G     + +H   ++ G  + D+   N+++DMY+ L +++AA ++F  M  +D +SW  +
Sbjct: 284 GDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTL 343

Query: 223 MGLFVDFEYAGDALKIFREMRKS---RIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           +  ++    A +A++ +  M+K    + I  T   ++++   + LG L++G ++HA  + 
Sbjct: 344 ITGYMQNGLANEAVERYGHMQKHEGLKAIQGT--FVSVLPAYSHLGALQQGMRMHALSIK 401

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            GL  ++ +   +I +Y+KCG L  +  +F ++  +S   W AIISG   +G   EAL  
Sbjct: 402 IGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGPWNAIISGLGVHGHGAEALTL 461

Query: 340 FIKMRQE--KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
           F +M+QE  K D V  ++L++  + +G +        +  + ++   P  +    C+   
Sbjct: 462 FSRMQQEGIKPDHVTFVSLLAACSHAGLVDQGRSFFDVMQVTYDI-VPIAKHYA-CMADM 519

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGE 437
             + G +D A+   + M    D   W  ++    ++G+ E
Sbjct: 520 LGRAGQLDEAFNFIQNMPIKPDSAVWGALLGACRIHGNVE 559



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 141/485 (29%), Positives = 229/485 (47%), Gaps = 20/485 (4%)

Query: 89  LARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSG--L 146
           L R  H +++  G    L   L+ P L+  N ++A F    L + A  L           
Sbjct: 7   LPRGAHAVLITSGQLRHLDPLLQVPPLLLNNTLIAAFSRAALPRLAFPLLRHILSCAYPF 66

Query: 147 VPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLIL-DVSVNNSVLDMYSCLMDLDAAI 205
            P+  T  ++IR   A  S A    +H   ++LGL+   V  + S++  Y     +  A 
Sbjct: 67  RPDGFTFPSLIR---AAPSNASAAQLHACALRLGLVRPSVFTSGSLVHAYLRFGRISEAY 123

Query: 206 QIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILG 265
           ++F EM  +DV +W  M+        A +A+ +F  M    +  DTV + +++ +  +LG
Sbjct: 124 KVFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAGDTVTVSSVLPMCVLLG 183

Query: 266 DLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIIS 325
           D      +H   V  GL  EL + N++I +Y K G L+ ++ VF+ +  + LV+W +IIS
Sbjct: 184 DQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIIS 243

Query: 326 GYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFP 385
           G  Q G    AL  F  MR     S D +TLVS+ +A  +         LH      G+ 
Sbjct: 244 GCEQRGQTAAALKMFQGMRGSGV-SPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWD 302

Query: 386 RYRSVQ-NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALY- 443
               +  N ++  Y+K  N++ A  +F+ M  ++D VSWNT+I GY  NG    A+  Y 
Sbjct: 303 VDDIIAGNAIVDMYAKLSNIEAAQRMFDSMP-VQDSVSWNTLITGYMQNGLANEAVERYG 361

Query: 444 HKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY--GCVVDLL 501
           H     G      T++S+L A  H G    G+ +    I   K+  + + Y   C++DL 
Sbjct: 362 HMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSI---KIGLNVDVYVGTCLIDLY 418

Query: 502 ARAGCLSDASGLAGKL-LEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPG 560
           A+ G L++A  L  K+     GP  W A++SG  +H G   +A  L S  Q++G IK   
Sbjct: 419 AKCGKLAEAMLLFEKMPRRSTGP--WNAIISGLGVH-GHGAEALTLFSRMQQEG-IKPDH 474

Query: 561 ISFLN 565
           ++F++
Sbjct: 475 VTFVS 479



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 51/95 (53%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D Y  + L+  Y K GK+ EA  LF+++P ++   W+ +I G  ++G   +++  FS M
Sbjct: 406 VDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGPWNAIISGLGVHGHGAEALTLFSRM 465

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLM 97
              G+ P+  T V +L A +    ++  RS   +M
Sbjct: 466 QQEGIKPDHVTFVSLLAACSHAGLVDQGRSFFDVM 500


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 170/561 (30%), Positives = 278/561 (49%), Gaps = 36/561 (6%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + L+  Y K G + E   +F+ +P+KNVV+W+ ++ G +    H + M  F  M   G+ 
Sbjct: 139 TSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIW 198

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY------------ 114
           PN FT   VL A A    L+L + +H   VKFG  S +F    L N Y            
Sbjct: 199 PNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSV 258

Query: 115 --------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
                   +VS N ++AG   N+   +A+ LF+  R +       T  TVI+ C  L   
Sbjct: 259 FNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQL 318

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME-CKDVISWTRMMGL 225
           AL   +H   +K G  L  +V  ++ D YS   +L  A+ IF      ++V+SWT ++  
Sbjct: 319 ALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISG 378

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVN-AILGDLKRGKQLHAQVVLGGLQS 284
            +       A+ +F  MR+ R++ +      ++  + +IL       Q+HAQV+    Q 
Sbjct: 379 CIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSILP-----PQIHAQVIKTNYQH 433

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
              +  +++A YSK G  + + S+F  I +K +V+W+A++S + Q G    A   F KM 
Sbjct: 434 IPSVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMA 493

Query: 345 QEKTDSVDSITLVSILTASG-ELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
            +     +  T+ S++ A     A ++   Q H I+ +  +     V + L+S YS+ GN
Sbjct: 494 IQGIKP-NEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGN 552

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           +D A IVFE     RD+VSWN++I GY  +G+   A+  + +M  +G   D  T+L+++ 
Sbjct: 553 IDSAQIVFERQTD-RDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIM 611

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
            C H GL  +G   F+ M+ ++K+ P+ EHY C+VDL +RAG L +   L   +    G 
Sbjct: 612 GCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGA 671

Query: 524 NIWRALLSGCVLH----VGRF 540
            +WR LL  C +H    +G+F
Sbjct: 672 MVWRTLLGACRVHKNVELGKF 692



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 143/525 (27%), Positives = 233/525 (44%), Gaps = 60/525 (11%)

Query: 101 GLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
           G    L E  +    V  N ++  +    +  + +  F+  R  G++ ++ T+  V++ C
Sbjct: 50  GARYPLDEIPRRDAAVGANRVLFDYARRGMVPEVLDQFSVARRGGVLVDSATLSCVLKAC 109

Query: 161 VALGSRALCELIHGLTIKLGLIL-DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
            ++  R L E +H L +K G    +VS   S++DMY     +   I++F  M  K+V++W
Sbjct: 110 RSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTW 169

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           T ++      +   + + +F  MR   I  +     +++S  A  G L  G+++HAQ V 
Sbjct: 170 TSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVK 229

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G +S + + NS++ MY+KCG ++ ++SVFN +  + +VSW  +++G   N C  EAL  
Sbjct: 230 FGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQL 289

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           F + R        S T  +++     L  L +  QLH    + GF    +V   L  +YS
Sbjct: 290 FHESRATMGKMTQS-TYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYS 348

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY- 458
           KCG +  A  +F      R+VVSW  II G   NG    A+ L+ +M E   +P+  TY 
Sbjct: 349 KCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYS 408

Query: 459 ------LSILNACGHA------------------------GLTNDGLVIFNQMIEENKVK 488
                 LSIL    HA                        G T D L IF +MIE+  V 
Sbjct: 409 AMLKASLSILPPQIHAQVIKTNYQHIPSVGTALLASYSKFGSTEDALSIF-KMIEQKDVV 467

Query: 489 PSQEHYGCVVDLLARAGCLSDASGLAGKL-LEGMGPNIW--RALLSGCVLHVG------- 538
                +  ++   A+AG    A+ L  K+ ++G+ PN +   +++  C            
Sbjct: 468 A----WSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQ 523

Query: 539 --------RFQDA----EALRSGSQKKGIIKIPGISFLNSTSRDF 571
                   R+ DA     AL S   +KG I    I F   T RD 
Sbjct: 524 FHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQTDRDL 568



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 114/251 (45%), Gaps = 37/251 (14%)

Query: 5   PYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML 64
           P   + LL++Y K G  ++A ++F  I +K+VV+WS ++  ++  G  E +   F+ M +
Sbjct: 435 PSVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAI 494

Query: 65  SGLLPNSFTMVGVLVA-AAGLQNLELARSIHGLMVKFGLESDL----------------- 106
            G+ PN FT+  V+ A A     ++  R  H + +K+     +                 
Sbjct: 495 QGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNID 554

Query: 107 -----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                FE   +  LVS N++++G+  +    +A+  F     SG+  + VT L VI GC 
Sbjct: 555 SAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCT 614

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMD-------LDAAIQIFREME-C 213
             G      ++ G      ++ D  +N + ++ Y+C++D       LD  + + R+M   
Sbjct: 615 HNGL-----VVEGQQYFDSMVRDHKINPT-MEHYACMVDLYSRAGKLDETMSLIRDMPFP 668

Query: 214 KDVISWTRMMG 224
              + W  ++G
Sbjct: 669 AGAMVWRTLLG 679


>gi|334185633|ref|NP_189226.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546761|sp|Q9LU94.2|PP255_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g25970
 gi|332643575|gb|AEE77096.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 701

 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 167/560 (29%), Positives = 276/560 (49%), Gaps = 35/560 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y S+++L +Y K G +  A  LFDE+P+++ VSW+ +I GY+  G  E +   F+ M 
Sbjct: 34  DIYVSNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCGKLEDAWCLFTCMK 93

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE-------------------S 104
            SG   + ++   +L   A ++  +L   +HGL++K G E                    
Sbjct: 94  RSGSDVDGYSFSRLLKGIASVKRFDLGEQVHGLVIKGGYECNVYVGSSLVDMYAKCERVE 153

Query: 105 DLFEGLKN---PYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTML--TVIRG 159
           D FE  K    P  VS NA++AGF+  +  + A  L         +  AVTM   T    
Sbjct: 154 DAFEAFKEISEPNSVSWNALIAGFVQVRDIKTAFWLLGLME----MKAAVTMDAGTFAPL 209

Query: 160 CVALGSRALCEL---IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME-CKD 215
              L     C L   +H   +KLGL  ++++ N+++  Y+    +  A ++F  +   KD
Sbjct: 210 LTLLDDPMFCNLLKQVHAKVLKLGLQHEITICNAMISSYADCGSVSDAKRVFDGLGGSKD 269

Query: 216 VISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
           +ISW  M+  F   E    A ++F +M++  +  D      L+S  +       GK LH 
Sbjct: 270 LISWNSMIAGFSKHELKESAFELFIQMQRHWVETDIYTYTGLLSACSGEEHQIFGKSLHG 329

Query: 276 QVVLGGLQSELRLSNSIIAMYSK--CGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA 333
            V+  GL+     +N++I+MY +   G ++ + S+F  +  K L+SW +II+G+ Q G +
Sbjct: 330 MVIKKGLEQVTSATNALISMYIQFPTGTMEDALSLFESLKSKDLISWNSIITGFAQKGLS 389

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC 393
            +A+  F  +R  +   VD     ++L +  +LA L++  Q+H +A ++GF     V + 
Sbjct: 390 EDAVKFFSYLRSSEI-KVDDYAFSALLRSCSDLATLQLGQQIHALATKSGFVSNEFVISS 448

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           LI  YSKCG ++ A   F+++      V+WN +I GY  +G G+ +L L+ +M       
Sbjct: 449 LIVMYSKCGIIESARKCFQQISSKHSTVAWNAMILGYAQHGLGQVSLDLFSQMCNQNVKL 508

Query: 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL 513
           D  T+ +IL AC H GL  +GL + N M    K++P  EHY   VDLL RAG ++ A  L
Sbjct: 509 DHVTFTAILTACSHTGLIQEGLELLNLMEPVYKIQPRMEHYAAAVDLLGRAGLVNKAKEL 568

Query: 514 AGKLLEGMGPNIWRALLSGC 533
              +     P + +  L  C
Sbjct: 569 IESMPLNPDPMVLKTFLGVC 588



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 150/295 (50%)

Query: 171 LIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFE 230
           L H   IK G I D+ V+N +LD Y     L  A  +F EM  +D +SW  M+  +    
Sbjct: 21  LTHCYAIKCGSISDIYVSNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCG 80

Query: 231 YAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSN 290
              DA  +F  M++S    D  +   L+   A +     G+Q+H  V+ GG +  + + +
Sbjct: 81  KLEDAWCLFTCMKRSGSDVDGYSFSRLLKGIASVKRFDLGEQVHGLVIKGGYECNVYVGS 140

Query: 291 SIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDS 350
           S++ MY+KC  ++ +   F +I+E + VSW A+I+G+VQ    + A      M  +   +
Sbjct: 141 SLVDMYAKCERVEDAFEAFKEISEPNSVSWNALIAGFVQVRDIKTAFWLLGLMEMKAAVT 200

Query: 351 VDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIV 410
           +D+ T   +LT   +     +  Q+H    + G     ++ N +ISSY+ CG+V  A  V
Sbjct: 201 MDAGTFAPLLTLLDDPMFCNLLKQVHAKVLKLGLQHEITICNAMISSYADCGSVSDAKRV 260

Query: 411 FEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
           F+ +G  +D++SWN++I G+  +   E+A  L+ +M       D  TY  +L+AC
Sbjct: 261 FDGLGGSKDLISWNSMIAGFSKHELKESAFELFIQMQRHWVETDIYTYTGLLSAC 315


>gi|414881621|tpg|DAA58752.1| TPA: hypothetical protein ZEAMMB73_723286 [Zea mays]
          Length = 1058

 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 166/561 (29%), Positives = 287/561 (51%), Gaps = 37/561 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  S L+S + + G   EA+++F  + +KN V+ + +I G     F E+++K F    
Sbjct: 309 DLYVGSALVSAFARHGLTDEAKDIFLSLKQKNAVTLNGLIVGLVRQDFSEEAVKIFVGTR 368

Query: 64  LSGLLPNSFTMVGVLVAAAGL----QNLELARSIHGLMVKFGLE---------------- 103
            + +  N+ T V +L A A      + L + R +HG M++ GL                 
Sbjct: 369 -NTVDVNADTYVVLLSALAEYSISEEGLRIGRVVHGHMLRTGLTDLKIAVSNGLVNMYAK 427

Query: 104 -------SDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTV 156
                  S +F+ ++    +S N I++    N   ++AV+ ++  R S + P+   +++ 
Sbjct: 428 CGAIESASKIFQLMEATDRISWNTIISALDQNGNCEEAVMHYSLMRQSCISPSNFALISS 487

Query: 157 IRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
           +  C  L      + +H   +K GL LD SV+N ++ MY     +    ++F  M   D 
Sbjct: 488 LSSCAGLKLLTAGQQVHCDAVKWGLDLDTSVSNVLVKMYGECGAMSDYWKVFNSMAEHDE 547

Query: 217 ISWTRMMGLFVDFEYA-GDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
           +SW  MMG+    +    + +K+F  M +  +I + V  +NL++  + L  L+ GKQ+HA
Sbjct: 548 VSWNTMMGVMASSQTPISEIVKVFNNMMRGGLIPNKVTFINLLAALSPLSVLELGKQVHA 607

Query: 276 QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK-SLVSWTAIISGYVQNGCAR 334
            V+  G+  +  + N++I+ Y+K GD+ S   +F  ++++   +SW ++ISGY+ NG  +
Sbjct: 608 AVMKHGVMEDNVVDNALISCYAKSGDMGSCEHLFTNMSDRRDAISWNSMISGYIYNGNLQ 667

Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
           EA++  + +       +D  T   IL A   +AALE  ++LH     +       V++ L
Sbjct: 668 EAMD-CVWLMIHSGQIMDCCTFSIILNACASVAALERGMELHAFGIRSHLESDVVVESAL 726

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           +  YSKCG VD A  +F  M   R+  SWN++I GY  +G G  A+ ++ +M  + E PD
Sbjct: 727 VDMYSKCGRVDYASKLFNSMT-QRNEFSWNSMISGYARHGLGRKAIEIFEEMLRSRESPD 785

Query: 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLA 514
             T++S+L+AC HAGL   GL  F +M+ ++ + P  EHY CV+DLL RAG +       
Sbjct: 786 HVTFVSVLSACSHAGLVERGLEYF-EMMPDHGILPQIEHYSCVIDLLGRAGKIDKIKEYI 844

Query: 515 GKLLEGMGPN--IWRALLSGC 533
            ++   + PN  IWR +L  C
Sbjct: 845 QRM--PIEPNALIWRTVLVAC 863



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 141/559 (25%), Positives = 254/559 (45%), Gaps = 56/559 (10%)

Query: 24  AENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSG----LLPNSFTM----- 74
           A+ +FD  P +++++W+ ++  Y+  G    +   F  M        L P   T      
Sbjct: 223 AQRVFDGTPIRDLITWNALMSVYAKKGDVASTFTLFKDMQRGDSRIQLRPTEHTFGSLIT 282

Query: 75  --------------VGVLVAAAGLQ-NLELARSIHGLMVKFGLES---DLFEGLKNPYLV 116
                         V V V  +G   +L +  ++     + GL     D+F  LK    V
Sbjct: 283 AASLSSGSSAVLDQVLVWVLKSGCSSDLYVGSALVSAFARHGLTDEAKDIFLSLKQKNAV 342

Query: 117 SCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCE------ 170
           + N ++ G +     ++AV +F   R +  V NA T + ++    AL   ++ E      
Sbjct: 343 TLNGLIVGLVRQDFSEEAVKIFVGTRNTVDV-NADTYVVLLS---ALAEYSISEEGLRIG 398

Query: 171 -LIHGLTIKLGLI-LDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
            ++HG  ++ GL  L ++V+N +++MY+    +++A +IF+ ME  D ISW  ++     
Sbjct: 399 RVVHGHMLRTGLTDLKIAVSNGLVNMYAKCGAIESASKIFQLMEATDRISWNTIISALDQ 458

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
                +A+  +  MR+S I     AL++ +S  A L  L  G+Q+H   V  GL  +  +
Sbjct: 459 NGNCEEAVMHYSLMRQSCISPSNFALISSLSSCAGLKLLTAGQQVHCDAVKWGLDLDTSV 518

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
           SN ++ MY +CG +     VFN + E   VSW  ++        ++  +++ +K+     
Sbjct: 519 SNVLVKMYGECGAMSDYWKVFNSMAEHDEVSWNTMMGVMAS---SQTPISEIVKVFNNMM 575

Query: 349 DS---VDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
                 + +T +++L A   L+ LE+  Q+H    + G      V N LIS Y+K G++ 
Sbjct: 576 RGGLIPNKVTFINLLAALSPLSVLELGKQVHAAVMKHGVMEDNVVDNALISCYAKSGDMG 635

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
               +F  M   RD +SWN++I GY  NG+ + A+     M  +G++ D  T+  ILNAC
Sbjct: 636 SCEHLFTNMSDRRDAISWNSMISGYIYNGNLQEAMDCVWLMIHSGQIMDCCTFSIILNAC 695

Query: 466 GHAGLTNDGLVI----FNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
                   G+ +        +E + V  S      +VD+ ++ G +  AS L   + +  
Sbjct: 696 ASVAALERGMELHAFGIRSHLESDVVVES-----ALVDMYSKCGRVDYASKLFNSMTQ-R 749

Query: 522 GPNIWRALLSGCVLH-VGR 539
               W +++SG   H +GR
Sbjct: 750 NEFSWNSMISGYARHGLGR 768



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 149/587 (25%), Positives = 277/587 (47%), Gaps = 59/587 (10%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L+++Y K  ++  A  +FDE+PE+N VSW+ ++ GY ++G  E++ + F  M+
Sbjct: 95  DLFLCNHLVNSYAKGARLAAASQVFDEMPERNAVSWTCLVSGYVLHGIAEEAFRVFRAML 154

Query: 64  L---SGLLPNSFTMVGVLVAA--AGLQNLELARSIHGLMVK----------------FG- 101
               +G  P SFT   +L A    G   L  A  +HGL+ K                +G 
Sbjct: 155 REVQAGCRPTSFTFGTLLRACQDGGPDRLGFAVQVHGLVSKTEYASNTTVCNALISMYGS 214

Query: 102 -------LESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLF-NFFRGSG---LVPNA 150
                  L   +F+G     L++ NA+++ +           LF +  RG     L P  
Sbjct: 215 CTVGPPILAQRVFDGTPIRDLITWNALMSVYAKKGDVASTFTLFKDMQRGDSRIQLRPTE 274

Query: 151 VTMLTVIR-GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFR 209
            T  ++I    ++ GS A+ + +    +K G   D+ V ++++  ++     D A  IF 
Sbjct: 275 HTFGSLITAASLSSGSSAVLDQVLVWVLKSGCSSDLYVGSALVSAFARHGLTDEAKDIFL 334

Query: 210 EMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKS-RIICDT-VALLNLISVNAILGD- 266
            ++ K+ ++   ++   V  +++ +A+KIF   R +  +  DT V LL+ ++  +I  + 
Sbjct: 335 SLKQKNAVTLNGLIVGLVRQDFSEEAVKIFVGTRNTVDVNADTYVVLLSALAEYSISEEG 394

Query: 267 LKRGKQLHAQVVLGGLQS-ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIIS 325
           L+ G+ +H  ++  GL   ++ +SN ++ MY+KCG ++S+  +F  +     +SW  IIS
Sbjct: 395 LRIGRVVHGHMLRTGLTDLKIAVSNGLVNMYAKCGAIESASKIFQLMEATDRISWNTIIS 454

Query: 326 GYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFP 385
              QNG   EA+  +  MRQ    S  +  L+S L++   L  L    Q+H  A + G  
Sbjct: 455 ALDQNGNCEEAVMHYSLMRQSCI-SPSNFALISSLSSCAGLKLLTAGQQVHCDAVKWGLD 513

Query: 386 RYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALA---- 441
              SV N L+  Y +CG +   + VF  M    D VSWNT++   GV    +T ++    
Sbjct: 514 LDTSVSNVLVKMYGECGAMSDYWKVFNSMA-EHDEVSWNTMM---GVMASSQTPISEIVK 569

Query: 442 LYHKMTETGEVPDSSTYLSILNACG-----HAGLTNDGLVIFNQMIEENKVKPSQEHYGC 496
           +++ M   G +P+  T++++L A         G      V+ + ++E+N V         
Sbjct: 570 VFNNMMRGGLIPNKVTFINLLAALSPLSVLELGKQVHAAVMKHGVMEDNVVD------NA 623

Query: 497 VVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDA 543
           ++   A++G +     L   + +      W +++SG + + G  Q+A
Sbjct: 624 LISCYAKSGDMGSCEHLFTNMSDRRDAISWNSMISGYIYN-GNLQEA 669



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 95/188 (50%), Gaps = 7/188 (3%)

Query: 265 GDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAII 324
           GD    + LH +++  GL  +L L N ++  Y+K   L ++  VF+++ E++ VSWT ++
Sbjct: 75  GDANSPENLHVELIKRGLNHDLFLCNHLVNSYAKGARLAAASQVFDEMPERNAVSWTCLV 134

Query: 325 SGYVQNGCAREALNQFIKMRQEKTDSV--DSITLVSILTA--SGELAALEICLQLHGIAF 380
           SGYV +G A EA   F  M +E        S T  ++L A   G    L   +Q+HG+  
Sbjct: 135 SGYVLHGIAEEAFRVFRAMLREVQAGCRPTSFTFGTLLRACQDGGPDRLGFAVQVHGLVS 194

Query: 381 EAGFPRYRSVQNCLISSYSKC--GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGET 438
           +  +    +V N LIS Y  C  G   LA  VF+    +RD+++WN ++  Y   G   +
Sbjct: 195 KTEYASNTTVCNALISMYGSCTVGPPILAQRVFDGTP-IRDLITWNALMSVYAKKGDVAS 253

Query: 439 ALALYHKM 446
              L+  M
Sbjct: 254 TFTLFKDM 261



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 91/380 (23%), Positives = 173/380 (45%), Gaps = 22/380 (5%)

Query: 170 ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDF 229
           E +H   IK GL  D+ + N +++ Y+    L AA Q+F EM  ++ +SWT ++  +V  
Sbjct: 81  ENLHVELIKRGLNHDLFLCNHLVNSYAKGARLAAASQVFDEMPERNAVSWTCLVSGYVLH 140

Query: 230 EYAGDALKIFREM-RKSRIICDTVALL--NLISVNAILGDLKRG--KQLHAQVVLGGLQS 284
             A +A ++FR M R+ +  C   +     L+      G  + G   Q+H  V      S
Sbjct: 141 GIAEEAFRVFRAMLREVQAGCRPTSFTFGTLLRACQDGGPDRLGFAVQVHGLVSKTEYAS 200

Query: 285 ELRLSNSIIAMYSKC--GDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
              + N++I+MY  C  G    ++ VF+    + L++W A++S Y + G        F  
Sbjct: 201 NTTVCNALISMYGSCTVGPPILAQRVFDGTPIRDLITWNALMSVYAKKGDVASTFTLFKD 260

Query: 343 MRQEKTDSVDSI-----TLVSILTASGELAALEICL-QLHGIAFEAGFPRYRSVQNCLIS 396
           M  ++ DS   +     T  S++TA+   +     L Q+     ++G      V + L+S
Sbjct: 261 M--QRGDSRIQLRPTEHTFGSLITAASLSSGSSAVLDQVLVWVLKSGCSSDLYVGSALVS 318

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
           ++++ G  D A  +F  +   ++ V+ N +I G       E A+ ++     T +V ++ 
Sbjct: 319 AFARHGLTDEAKDIFLSLK-QKNAVTLNGLIVGLVRQDFSEEAVKIFVGTRNTVDV-NAD 376

Query: 457 TYLSILNACGHAGLTNDGL----VIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASG 512
           TY+ +L+A     ++ +GL    V+   M+              +V++ A+ G +  AS 
Sbjct: 377 TYVVLLSALAEYSISEEGLRIGRVVHGHMLRTGLTDLKIAVSNGLVNMYAKCGAIESASK 436

Query: 513 LAGKLLEGMGPNIWRALLSG 532
           +  +L+E      W  ++S 
Sbjct: 437 IF-QLMEATDRISWNTIISA 455


>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa]
 gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]
          Length = 784

 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 164/618 (26%), Positives = 294/618 (47%), Gaps = 72/618 (11%)

Query: 7   NSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSG 66
           N ++ L  + +SG +  A ++F+++   +   W+++I GY+ NG  ++++  +  M   G
Sbjct: 60  NITRDLCGFVESGLMGNALDMFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYYRMECEG 119

Query: 67  LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL-------------------- 106
           +  ++FT   V+ A   L  L + + +HG ++K G + D+                    
Sbjct: 120 IRSDNFTFPFVIKACGELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELAE 179

Query: 107 --FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
             F+ +    LVS N++V+G+  +     +++ F      G   +   M++ +  C    
Sbjct: 180 KVFDEMPVRDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGACSIEH 239

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
                  IH   I+  L LD+ V  S++DMY     +D A ++F  +  K++++W  M+G
Sbjct: 240 CLRSGMEIHCQVIRSELELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNAMIG 299

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
              +                 ++I D + ++NL+   +  G L  GK +H   +      
Sbjct: 300 GMQE---------------DDKVIPDVITMINLLPSCSQSGALLEGKSIHGFAIRKMFLP 344

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
            L L  +++ MY KCG+L  +  VFNQ+ EK++VSW  +++ YVQN   +EAL  F  + 
Sbjct: 345 YLVLETALVDMYGKCGELKLAEHVFNQMNEKNMVSWNTMVAAYVQNEQYKEALKMFQHIL 404

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
            E     D+IT+ S+L A  ELA+     Q+H    + G      + N ++  Y+KCG++
Sbjct: 405 NEPLKP-DAITIASVLPAVAELASRSEGKQIHSYIMKLGLGSNTFISNAIVYMYAKCGDL 463

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
             A   F+ M   +DVVSWNT+I  Y ++G G T++  + +M   G  P+ ST++S+L A
Sbjct: 464 QTAREFFDGM-VCKDVVSWNTMIMAYAIHGFGRTSIQFFSEMRGKGFKPNGSTFVSLLTA 522

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C  +GL ++G   FN M  E  + P  EHYGC++DLL R G L +A     ++       
Sbjct: 523 CSISGLIDEGWGFFNSMKVEYGIDPGIEHYGCMLDLLGRNGNLDEAKCFIEEMPLVPTAR 582

Query: 525 IWRALL--------------------------SGCVL-------HVGRFQDAEALRSGSQ 551
           IW +LL                          +GC +         GR++D + ++   +
Sbjct: 583 IWGSLLAASRNHNDVVLAELAARHILSLKHDNTGCYVLLSNMYAEAGRWEDVDRIKYLMK 642

Query: 552 KKGIIKIPGISFLNSTSR 569
           ++G++K  G S ++   R
Sbjct: 643 EQGLVKTVGCSMVDINGR 660



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 136/512 (26%), Positives = 245/512 (47%), Gaps = 17/512 (3%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D Y  + L+  Y K G I+ AE +FDE+P +++VSW+ ++ GY I+G    S+  F  M
Sbjct: 157 LDVYVCNFLIDMYLKIGFIELAEKVFDEMPVRDLVSWNSMVSGYQIDGDGLSSLMCFKEM 216

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPYLVSCNA 120
           +  G   + F M+  L A +    L     IH  +++  LE D+     L + Y      
Sbjct: 217 LRLGNKADRFGMISALGACSIEHCLRSGMEIHCQVIRSELELDIMVQTSLIDMYGKCGKV 276

Query: 121 IVAGFINNKLFQQAVLLFNFFRG-----SGLVPNAVTMLTVIRGCVALGSRALCELIHGL 175
             A  + N+++ + ++ +N   G       ++P+ +TM+ ++  C   G+    + IHG 
Sbjct: 277 DYAERVFNRIYSKNIVAWNAMIGGMQEDDKVIPDVITMINLLPSCSQSGALLEGKSIHGF 336

Query: 176 TIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDA 235
            I+   +  + +  +++DMY    +L  A  +F +M  K+++SW  M+  +V  E   +A
Sbjct: 337 AIRKMFLPYLVLETALVDMYGKCGELKLAEHVFNQMNEKNMVSWNTMVAAYVQNEQYKEA 396

Query: 236 LKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAM 295
           LK+F+ +    +  D + + +++   A L     GKQ+H+ ++  GL S   +SN+I+ M
Sbjct: 397 LKMFQHILNEPLKPDAITIASVLPAVAELASRSEGKQIHSYIMKLGLGSNTFISNAIVYM 456

Query: 296 YSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSIT 355
           Y+KCGDL ++R  F+ +  K +VSW  +I  Y  +G  R ++  F +MR  K    +  T
Sbjct: 457 YAKCGDLQTAREFFDGMVCKDVVSWNTMIMAYAIHGFGRTSIQFFSEMRG-KGFKPNGST 515

Query: 356 LVSILTASGELAALEICLQ-LHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM 414
            VS+LTA      ++      + +  E G         C++    + GN+D A    EEM
Sbjct: 516 FVSLLTACSISGLIDEGWGFFNSMKVEYGIDPGIEHYGCMLDLLGRNGNLDEAKCFIEEM 575

Query: 415 GFLRDVVSWNTIIYGYGVNGHGETALA-LYHKMTETGEVPDSSTYLSILNACGHAGLTND 473
             +     W +++       H +  LA L  +   + +  ++  Y+ + N    AG   D
Sbjct: 576 PLVPTARIWGSLL--AASRNHNDVVLAELAARHILSLKHDNTGCYVLLSNMYAEAGRWED 633

Query: 474 GLVIFNQMIEENKVKPSQEHYGC-VVDLLARA 504
              I   M E+  VK      GC +VD+  R+
Sbjct: 634 VDRIKYLMKEQGLVKT----VGCSMVDINGRS 661


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 145/494 (29%), Positives = 267/494 (54%), Gaps = 23/494 (4%)

Query: 43  IHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL 102
           +H   +N  H       + +++SGL+ + F +   + A+  +  +  AR +         
Sbjct: 82  VHKRHLNQIH-------AQLVVSGLVESGFLVTKFVNASWNIGEIGYARKV--------- 125

Query: 103 ESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA 162
               F+    P +   NAI+ G+ ++  F  A+ +++  + SG+ P+  T+  V++ C  
Sbjct: 126 ----FDEFPEPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSG 181

Query: 163 LGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
           +    + + +HG   +LG   DV V N ++ +Y+    ++ A  +F  ++ ++++SWT M
Sbjct: 182 VPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSM 241

Query: 223 MGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL 282
           +  +       +AL+IF +MR+  +  D +AL++++     + DL++GK +H  VV  GL
Sbjct: 242 ISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGL 301

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
           + E  L  S+ AMY+KCG +  +RS F+Q+   +++ W A+ISGY +NG   EA+  F +
Sbjct: 302 EFEPDLLISLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQE 361

Query: 343 MRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
           M   K    DSIT+ S + A  ++ +L++   +     +  +     V   LI  ++KCG
Sbjct: 362 M-ISKNIRTDSITVRSAILACAQVGSLDLAKWMGDYINKTEYRNDVFVNTALIDMFAKCG 420

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
           +VDLA  VF+     +DVV W+ +I GYG++G G+ A+ L++ M + G  P+  T++ +L
Sbjct: 421 SVDLAREVFDRT-LDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLL 479

Query: 463 NACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMG 522
            AC H+GL  +G  +F+ M +   ++   +HY CVVDLL R+G L++A      +    G
Sbjct: 480 TACNHSGLVEEGWELFHSM-KYYGIEARHQHYACVVDLLGRSGHLNEAYDFITTMPIEPG 538

Query: 523 PNIWRALLSGCVLH 536
            ++W ALL  C ++
Sbjct: 539 VSVWGALLGACKIY 552



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/442 (26%), Positives = 223/442 (50%), Gaps = 25/442 (5%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           +K ++  +  G+I  A  +FDE PE +V  W+ +I GYS + F   +++ +S M  SG+ 
Sbjct: 107 TKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVN 166

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------L 106
           P+ FT+  VL A +G+  LE+ + +HG + + G ESD                      +
Sbjct: 167 PDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIV 226

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           FEGL +  +VS  ++++G+  N L  +A+ +F   R   + P+ + +++V+R    +   
Sbjct: 227 FEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDL 286

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
              + IHG  +K+GL  +  +  S+  MY+    +  A   F +ME  +V+ W  M+  +
Sbjct: 287 EQGKSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGY 346

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
               Y  +A+ +F+EM    I  D++ + + I   A +G L   K +   +     ++++
Sbjct: 347 AKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLDLAKWMGDYINKTEYRNDV 406

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            ++ ++I M++KCG +D +R VF++  +K +V W+A+I GY  +G  ++A++ F  M+Q 
Sbjct: 407 FVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQA 466

Query: 347 KTDSVDSITLVSILTASGELAALEICLQL-HGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
                D +T V +LTA      +E   +L H + +     R++    C++    + G+++
Sbjct: 467 GVCPND-VTFVGLLTACNHSGLVEEGWELFHSMKYYGIEARHQHYA-CVVDLLGRSGHLN 524

Query: 406 LAYIVFEEMGFLRDVVSWNTII 427
            AY     M     V  W  ++
Sbjct: 525 EAYDFITTMPIEPGVSVWGALL 546



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/344 (23%), Positives = 168/344 (48%), Gaps = 23/344 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L++ Y K G++++A  +F+ + ++N+VSW+ +I GY  NG   ++++ F  M 
Sbjct: 203 DVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMR 262

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
              + P+   +V VL A   +++LE  +SIHG +VK GLE +                  
Sbjct: 263 QRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVM 322

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                F+ ++ P ++  NA+++G+  N    +AV LF       +  +++T+ + I  C 
Sbjct: 323 VARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACA 382

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            +GS  L + +     K     DV VN +++DM++    +D A ++F     KDV+ W+ 
Sbjct: 383 QVGSLDLAKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSA 442

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+  +       DA+ +F  M+++ +  + V  + L++     G ++ G +L   +   G
Sbjct: 443 MIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACNHSGLVEEGWELFHSMKYYG 502

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAII 324
           +++  +    ++ +  + G L+ +      +  E  +  W A++
Sbjct: 503 IEARHQHYACVVDLLGRSGHLNEAYDFITTMPIEPGVSVWGALL 546


>gi|125605681|gb|EAZ44717.1| hypothetical protein OsJ_29347 [Oryza sativa Japonica Group]
          Length = 701

 Score =  250 bits (638), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 176/583 (30%), Positives = 292/583 (50%), Gaps = 39/583 (6%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  D +  + L++ Y K G +  A   F  +P +NVVSW+  I G+  +     +M    
Sbjct: 92  PEYDVFVGTSLVNMYAKCGDMGAAMREFWRMPVRNVVSWTTAIAGFVQDDEPVSAMLLLR 151

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--LFEGLKNPYL--- 115
            M+ +G+  N +T   +L+A A +  +  A  IHG+++K  +  D  + E L + Y    
Sbjct: 152 EMVRNGVAINKYTATSILLACAQMSMVREASQIHGMVLKTEMYLDCVVKEALISTYTNFG 211

Query: 116 --------------VSCNAIVAGFI----NNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
                         VS  +I + FI    N+ L +   LL   F   GL PN     +V 
Sbjct: 212 FIELSEKVFEEAGTVSNRSIWSAFISGVSNHSLLRSVQLLRRMFH-QGLRPNDKCYASVF 270

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
               ++ S      +H   IK G I  + V +++  MYS   ++  + ++F EM+ +D +
Sbjct: 271 S---SVNSIEFGGQLHSSAIKEGFIHGILVGSALSTMYSRCDNVQDSYKVFEEMQERDGV 327

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           SWT M+  F    ++ +A   FR M       D V+L  ++S       L +GK++H   
Sbjct: 328 SWTAMVAGFATHGHSVEAFLTFRNMILDGFKPDHVSLTAILSACNRPECLLKGKEVHGHT 387

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           +    ++   +++  I+MYSKC  + ++R +F+    K  V W+++ISGY  NGC  EA+
Sbjct: 388 LRVYGETTF-INDCFISMYSKCQGVQTARRIFDATPRKDQVMWSSMISGYATNGCGEEAI 446

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
           + F ++    +  +DS    SIL+   ++A    C  LHG A +AG    +SV + L+  
Sbjct: 447 SLF-QLMVAASIRIDSYICSSILSLCADIARPFYCKPLHGYAIKAGILSDQSVSSSLVKV 505

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           YS+ GN+D +  VF+E+  + D+V+W TII GY  +G  + ALA++  M + G  PD+  
Sbjct: 506 YSRSGNMDDSRKVFDEIS-VPDLVAWTTIIDGYAQHGSSQNALAMFDLMVQLGVRPDTVV 564

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL 517
            +S+L+AC   GL   G   FN M     V+P  +HY C+VDLL R+G L++A      +
Sbjct: 565 LVSVLSACSRNGLVEQGFNYFNSMRTAYGVEPELQHYCCMVDLLGRSGRLAEAKYFVDSM 624

Query: 518 LEGMGPN--IWRALLSGCVLH----VGRFQDAEALRSGSQKKG 554
              M P+  +W  LL+ C +H    +GRF + + +R G+   G
Sbjct: 625 --PMKPDLMVWSTLLAACRVHDDTVLGRFVENK-IREGNYDSG 664



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 142/563 (25%), Positives = 250/563 (44%), Gaps = 53/563 (9%)

Query: 17  KSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVG 76
           KSG++++A  +F +    + V W+  + G   NG    +++ F  M+     PNSFT  G
Sbjct: 7   KSGRLRDALRVFADGDPSSAVCWNAAVSGAVRNGEGGLAVEMFRDMVWGSCEPNSFTYSG 66

Query: 77  VLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPY-------------------- 114
            L A A  + L + R++HGL+++   E D+F G  L N Y                    
Sbjct: 67  ALSACAAGEELSVGRAVHGLVLRRDPEYDVFVGTSLVNMYAKCGDMGAAMREFWRMPVRN 126

Query: 115 LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHG 174
           +VS    +AGF+ +     A+LL      +G+  N  T  +++  C  +        IHG
Sbjct: 127 VVSWTTAIAGFVQDDEPVSAMLLLREMVRNGVAINKYTATSILLACAQMSMVREASQIHG 186

Query: 175 LTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS-WTRMMGLFVDFEYAG 233
           + +K  + LD  V  +++  Y+    ++ + ++F E       S W+  +    +     
Sbjct: 187 MVLKTEMYLDCVVKEALISTYTNFGFIELSEKVFEEAGTVSNRSIWSAFISGVSNHSLLR 246

Query: 234 DALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSII 293
               + R   +     D        SVN+I    + G QLH+  +  G    + + +++ 
Sbjct: 247 SVQLLRRMFHQGLRPNDKCYASVFSSVNSI----EFGGQLHSSAIKEGFIHGILVGSALS 302

Query: 294 AMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV-- 351
            MYS+C ++  S  VF ++ E+  VSWTA+++G+  +G + EA   F+  R    D    
Sbjct: 303 TMYSRCDNVQDSYKVFEEMQERDGVSWTAMVAGFATHGHSVEA---FLTFRNMILDGFKP 359

Query: 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVF 411
           D ++L +IL+A      L    ++HG      +     + +C IS YSKC  V  A  +F
Sbjct: 360 DHVSLTAILSACNRPECLLKGKEVHGHTLRV-YGETTFINDCFISMYSKCQGVQTARRIF 418

Query: 412 EEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLT 471
           +     +D V W+++I GY  NG GE A++L+  M       DS    SIL+ C      
Sbjct: 419 DATP-RKDQVMWSSMISGYATNGCGEEAISLFQLMVAASIRIDSYICSSILSLCADIARP 477

Query: 472 N-----DGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMG-PNI 525
                  G  I   ++ +  V  S      +V + +R+G + D+     K+ + +  P++
Sbjct: 478 FYCKPLHGYAIKAGILSDQSVSSS------LVKVYSRSGNMDDSR----KVFDEISVPDL 527

Query: 526 --WRALLSGCVLHVGRFQDAEAL 546
             W  ++ G   H G  Q+A A+
Sbjct: 528 VAWTTIIDGYAQH-GSSQNALAM 549



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 128/497 (25%), Positives = 226/497 (45%), Gaps = 60/497 (12%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPE-KNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLP 69
           L+S Y   G I+ +E +F+E     N   WS  I G S N    +S++    M   GL P
Sbjct: 203 LISTYTNFGFIELSEKVFEEAGTVSNRSIWSAFISGVS-NHSLLRSVQLLRRMFHQGLRP 261

Query: 70  NS------FTMVGVLVAAAGLQNLELARS-IHGLMVKFGLES------------DLFEGL 110
           N       F+ V  +     L +  +    IHG++V   L +             +FE +
Sbjct: 262 NDKCYASVFSSVNSIEFGGQLHSSAIKEGFIHGILVGSALSTMYSRCDNVQDSYKVFEEM 321

Query: 111 KNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCE 170
           +    VS  A+VAGF  +    +A L F      G  P+ V++  ++  C    +R  C 
Sbjct: 322 QERDGVSWTAMVAGFATHGHSVEAFLTFRNMILDGFKPDHVSLTAILSAC----NRPECL 377

Query: 171 L----IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
           L    +HG T+++       +N+  + MYS    +  A +IF     KD + W+ M+  +
Sbjct: 378 LKGKEVHGHTLRV-YGETTFINDCFISMYSKCQGVQTARRIFDATPRKDQVMWSSMISGY 436

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
                  +A+ +F+ M  + I  D+    +++S+ A +      K LH   +  G+ S+ 
Sbjct: 437 ATNGCGEEAISLFQLMVAASIRIDSYICSSILSLCADIARPFYCKPLHGYAIKAGILSDQ 496

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            +S+S++ +YS+ G++D SR VF++I+   LV+WT II GY Q+G ++ AL  F  M Q 
Sbjct: 497 SVSSSLVKVYSRSGNMDDSRKVFDEISVPDLVAWTTIIDGYAQHGSSQNALAMFDLMVQL 556

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN------------CL 394
                D++ LVS+L+A             +G+  E GF  + S++             C+
Sbjct: 557 GVRP-DTVVLVSVLSACSR----------NGLV-EQGFNYFNSMRTAYGVEPELQHYCCM 604

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALY--HKMTETGEV 452
           +    + G +  A    + M    D++ W+T++    V  H +T L  +  +K+ E    
Sbjct: 605 VDLLGRSGRLAEAKYFVDSMPMKPDLMVWSTLLAACRV--HDDTVLGRFVENKIREGNY- 661

Query: 453 PDSSTYLSILNACGHAG 469
            DS ++ ++ N   ++G
Sbjct: 662 -DSGSFATLSNILANSG 677



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 110/255 (43%), Gaps = 23/255 (9%)

Query: 292 IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
           ++ + +K G L  +  VF      S V W A +SG V+NG    A+  F  M     +  
Sbjct: 1   MVDLLAKSGRLRDALRVFADGDPSSAVCWNAAVSGAVRNGEGGLAVEMFRDMVWGSCEP- 59

Query: 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS-VQNCLISSYSKCGNVDLAYIV 410
           +S T    L+A      L +   +HG+      P Y   V   L++ Y+KCG++  A   
Sbjct: 60  NSFTYSGALSACAAGEELSVGRAVHGLVLRRD-PEYDVFVGTSLVNMYAKCGDMGAAMRE 118

Query: 411 FEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGL 470
           F  M  +R+VVSW T I G+  +    +A+ L  +M   G   +  T  SIL AC    +
Sbjct: 119 FWRMP-VRNVVSWTTAIAGFVQDDEPVSAMLLLREMVRNGVAINKYTATSILLACAQMSM 177

Query: 471 TND-----GLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP-- 523
             +     G+V+  +M  +  VK +      ++      G +     L+ K+ E  G   
Sbjct: 178 VREASQIHGMVLKTEMYLDCVVKEA------LISTYTNFGFIE----LSEKVFEEAGTVS 227

Query: 524 --NIWRALLSGCVLH 536
             +IW A +SG   H
Sbjct: 228 NRSIWSAFISGVSNH 242


>gi|449447749|ref|XP_004141630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Cucumis sativus]
          Length = 746

 Score =  250 bits (638), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 173/549 (31%), Positives = 274/549 (49%), Gaps = 31/549 (5%)

Query: 17  KSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVG 76
           K G  + A+ LFD++ + N+V+++ +I GY      +K M  F      GL  + +   G
Sbjct: 13  KCGDTRSADKLFDKMSKSNIVTYNSLISGYVQMSNLDKVMILFDKARRLGLKLDKYNCAG 72

Query: 77  VLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFEGLKNPY 114
            L A +   NL   + IHGL++ +GL S                       LF+      
Sbjct: 73  ALTACSQSGNLSAGKMIHGLILVYGLGSQVVLTNSLIDMYSKCGQVDYARILFDHSDKLD 132

Query: 115 LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL--GSRALCELI 172
            VS N+++AG++ N  +++ + +      +GL  N  T+ + ++ C +   G +    ++
Sbjct: 133 GVSWNSLIAGYVQNGKYEELLTILQKMHQNGLAFNTYTLGSALKACSSNFNGCKMFGTML 192

Query: 173 HGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYA 232
           H   IKLGL LDV V  ++LDMY+    LD AIQIF +M  K+V+ +  MM   +  E  
Sbjct: 193 HDHAIKLGLHLDVVVGTALLDMYAKTGSLDDAIQIFDQMVDKNVVMYNAMMAGLLQQETI 252

Query: 233 GD-----ALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
            D     AL +F EM+   I        +L+    I+ D K  KQ+HA +   GL S+  
Sbjct: 253 EDKCAYKALNLFFEMKSCGIKPSMFTYSSLLKACIIVEDFKFAKQVHALMCKNGLLSDEY 312

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
           + + +I +YS  G +  +   FN I   ++V  TA+I GY+QNG    AL+ F ++   +
Sbjct: 313 IGSILIDLYSVLGSMMDALLCFNSIHNLTIVPMTAMIFGYLQNGEFESALSLFYELLTYE 372

Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
            +  D     +I+++   +  L    Q+ G A + G  R+   QN  I  Y+K G++  A
Sbjct: 373 -EKPDEFIFSTIMSSCANMGMLRSGEQIQGHATKVGISRFTIFQNSQIWMYAKSGDLYAA 431

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
            + F++M    D+VSW+T+I     +GH   AL  +  M   G  P+   +L +L AC H
Sbjct: 432 NLTFQQMEN-PDIVSWSTMICSNAQHGHAMEALRFFELMKSCGIEPNHFAFLGVLIACSH 490

Query: 468 AGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWR 527
            GL  +GL  F+ M ++ K+K   +H  CVVDLL RAG L+DA  L  +L     P +WR
Sbjct: 491 RGLVEEGLRYFDTMEKDYKMKLHVKHCVCVVDLLGRAGRLADAESLILRLGFEHEPVMWR 550

Query: 528 ALLSGCVLH 536
           ALLS C +H
Sbjct: 551 ALLSACRIH 559



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 118/494 (23%), Positives = 218/494 (44%), Gaps = 36/494 (7%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ L+  Y K G++  A  LFD   + + VSW+ +I GY  NG +E+ +     M  +GL
Sbjct: 105 TNSLIDMYSKCGQVDYARILFDHSDKLDGVSWNSLIAGYVQNGKYEELLTILQKMHQNGL 164

Query: 68  LPNSFTMVGVLVAAAGLQN--LELARSIHGLMVKFGLESD-------------------- 105
             N++T+   L A +   N        +H   +K GL  D                    
Sbjct: 165 AFNTYTLGSALKACSSNFNGCKMFGTMLHDHAIKLGLHLDVVVGTALLDMYAKTGSLDDA 224

Query: 106 --LFEGLKNPYLVSCNAIVAGF-----INNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
             +F+ + +  +V  NA++AG      I +K   +A+ LF   +  G+ P+  T  ++++
Sbjct: 225 IQIFDQMVDKNVVMYNAMMAGLLQQETIEDKCAYKALNLFFEMKSCGIKPSMFTYSSLLK 284

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C+ +      + +H L  K GL+ D  + + ++D+YS L  +  A+  F  +    ++ 
Sbjct: 285 ACIIVEDFKFAKQVHALMCKNGLLSDEYIGSILIDLYSVLGSMMDALLCFNSIHNLTIVP 344

Query: 219 WTRMM-GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
            T M+ G   + E+   AL +F E+       D      ++S  A +G L+ G+Q+    
Sbjct: 345 MTAMIFGYLQNGEFES-ALSLFYELLTYEEKPDEFIFSTIMSSCANMGMLRSGEQIQGHA 403

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
              G+       NS I MY+K GDL ++   F Q+    +VSW+ +I    Q+G A EAL
Sbjct: 404 TKVGISRFTIFQNSQIWMYAKSGDLYAANLTFQQMENPDIVSWSTMICSNAQHGHAMEAL 463

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN--CLI 395
            +F ++ +      +    + +L A      +E  L+      E  +     V++  C++
Sbjct: 464 -RFFELMKSCGIEPNHFAFLGVLIACSHRGLVEEGLRYFD-TMEKDYKMKLHVKHCVCVV 521

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
               + G +  A  +   +GF  + V W  ++    ++    TA  +  K+ E  E   S
Sbjct: 522 DLLGRAGRLADAESLILRLGFEHEPVMWRALLSACRIHKDTVTAQRVAQKVIEL-EPLAS 580

Query: 456 STYLSILNACGHAG 469
           ++Y+ + N    AG
Sbjct: 581 ASYVLLYNIYMDAG 594



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 159/354 (44%), Gaps = 31/354 (8%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHE-----KSMK 57
           +D    + LL  Y K+G + +A  +FD++ +KNVV ++ ++ G       E     K++ 
Sbjct: 203 LDVVVGTALLDMYAKTGSLDDAIQIFDQMVDKNVVMYNAMMAGLLQQETIEDKCAYKALN 262

Query: 58  AFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------ 105
            F  M   G+ P+ FT   +L A   +++ + A+ +H LM K GL SD            
Sbjct: 263 LFFEMKSCGIKPSMFTYSSLLKACIIVEDFKFAKQVHALMCKNGLLSDEYIGSILIDLYS 322

Query: 106 ----------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLT 155
                      F  + N  +V   A++ G++ N  F+ A+ LF         P+     T
Sbjct: 323 VLGSMMDALLCFNSIHNLTIVPMTAMIFGYLQNGEFESALSLFYELLTYEEKPDEFIFST 382

Query: 156 VIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKD 215
           ++  C  +G     E I G   K+G+       NS + MY+   DL AA   F++ME  D
Sbjct: 383 IMSSCANMGMLRSGEQIQGHATKVGISRFTIFQNSQIWMYAKSGDLYAANLTFQQMENPD 442

Query: 216 VISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
           ++SW+ M+       +A +AL+ F  M+   I  +  A L ++   +  G ++ G + + 
Sbjct: 443 IVSWSTMICSNAQHGHAMEALRFFELMKSCGIEPNHFAFLGVLIACSHRGLVEEGLR-YF 501

Query: 276 QVVLGGLQSELRLSN--SIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISG 326
             +    + +L + +   ++ +  + G L  + S+  ++  E   V W A++S 
Sbjct: 502 DTMEKDYKMKLHVKHCVCVVDLLGRAGRLADAESLILRLGFEHEPVMWRALLSA 555


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  250 bits (638), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 155/480 (32%), Positives = 262/480 (54%), Gaps = 19/480 (3%)

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAI 121
           M+L+G+  +  +   ++ + A L ++E AR +     + G+++              NA+
Sbjct: 30  MILTGIFGHGNSNAKLIQSYARLGHIESARQVFDKSPQCGVDA-------------WNAM 76

Query: 122 VAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGL 181
           +  +       +A+ L++     G+ P++ T   V++ C         E      +  G 
Sbjct: 77  IIAYSRRGAMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGY 136

Query: 182 ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFRE 241
             DV V  +VL++Y+    +D A+++F +M  +D++ WT M+        A +A+ I+R+
Sbjct: 137 GDDVFVGAAVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQ 196

Query: 242 MRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGD 301
           M K R+  D V +L LI     LG  K G  +H  ++   +  ++ +  S++ MY+K G 
Sbjct: 197 MHKKRVEGDGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGH 256

Query: 302 LDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILT 361
           L+ +  VF ++  K+++SW+A+ISG+ QNG A  AL   + M Q      DS++LVS+L 
Sbjct: 257 LELASCVFRRMLYKNVISWSALISGFAQNGFAGNALQLVVDM-QSFGYKPDSVSLVSVLL 315

Query: 362 ASGELAALEICLQLHG-IAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDV 420
           A  ++  L++   +HG I     F    S    +I  YSKCG++  A  VF+++ F RD 
Sbjct: 316 ACSQVGFLKLGKSVHGYIVRRLHFDCVSS--TAVIDMYSKCGSLSFARTVFDQISF-RDS 372

Query: 421 VSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQ 480
           +SWN II  YG++G GE AL+L+ +M ET   PD +T+ S+L+A  H+GL   G   F+ 
Sbjct: 373 ISWNAIIASYGIHGSGEEALSLFLQMRETNVKPDHATFASLLSAFSHSGLVEKGRYWFSI 432

Query: 481 MIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRF 540
           M+ E K++PS++HY C+VDLL+RAG + +A  L   ++   G  IW ALLSGC+ H G+F
Sbjct: 433 MVNEYKIQPSEKHYACMVDLLSRAGRVEEAQELIESMITEPGIAIWVALLSGCLNH-GKF 491



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 127/449 (28%), Positives = 218/449 (48%), Gaps = 31/449 (6%)

Query: 7   NSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSG 66
           +++KL+ +Y + G I+ A  +FD+ P+  V +W+ +I  YS  G   +++  +  M   G
Sbjct: 41  SNAKLIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRGAMFEALSLYHRMASEG 100

Query: 67  LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPY---------- 114
           + P+S T   VL A     +L          V  G   D+F G  + N Y          
Sbjct: 101 VRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAM 160

Query: 115 ----------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
                     LV    ++ G   N   ++AV ++       +  + V ML +I+ C  LG
Sbjct: 161 RVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLG 220

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
              +   IHG  I+  +I+DV V  S++DMY+    L+ A  +FR M  K+VISW+ ++ 
Sbjct: 221 HSKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFRRMLYKNVISWSALIS 280

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            F    +AG+AL++  +M+      D+V+L++++   + +G LK GK +H  +V   L  
Sbjct: 281 GFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGKSVHGYIVR-RLHF 339

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           +   S ++I MYSKCG L  +R+VF+QI+ +  +SW AII+ Y  +G   EAL+ F++MR
Sbjct: 340 DCVSSTAVIDMYSKCGSLSFARTVFDQISFRDSISWNAIIASYGIHGSGEEALSLFLQMR 399

Query: 345 QE--KTDSVDSITLVSILTASG--ELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
           +   K D     +L+S  + SG  E       + ++    +     Y     C++   S+
Sbjct: 400 ETNVKPDHATFASLLSAFSHSGLVEKGRYWFSIMVNEYKIQPSEKHY----ACMVDLLSR 455

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYG 429
            G V+ A  + E M     +  W  ++ G
Sbjct: 456 AGRVEEAQELIESMITEPGIAIWVALLSG 484



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 173/352 (49%), Gaps = 25/352 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + +L+ Y K GK+ EA  +FD++  +++V W+ +I G + NG   +++  +  M 
Sbjct: 139 DVFVGAAVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMH 198

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK----------------------FG 101
              +  +   M+G++ A   L + ++  SIHG M++                        
Sbjct: 199 KKRVEGDGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLE 258

Query: 102 LESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
           L S +F  +    ++S +A+++GF  N     A+ L    +  G  P++V++++V+  C 
Sbjct: 259 LASCVFRRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACS 318

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            +G   L + +HG  ++  L  D   + +V+DMYS    L  A  +F ++  +D ISW  
Sbjct: 319 QVGFLKLGKSVHGYIVRR-LHFDCVSSTAVIDMYSKCGSLSFARTVFDQISFRDSISWNA 377

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG- 280
           ++  +       +AL +F +MR++ +  D     +L+S  +  G +++G+   + +V   
Sbjct: 378 IIASYGIHGSGEEALSLFLQMRETNVKPDHATFASLLSAFSHSGLVEKGRYWFSIMVNEY 437

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVF-NQITEKSLVSWTAIISGYVQNG 331
            +Q   +    ++ + S+ G ++ ++ +  + ITE  +  W A++SG + +G
Sbjct: 438 KIQPSEKHYACMVDLLSRAGRVEEAQELIESMITEPGIAIWVALLSGCLNHG 489



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 86/176 (48%), Gaps = 21/176 (11%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D    + L+  Y K+G ++ A  +F  +  KNV+SWS +I G++ NGF   +++    M
Sbjct: 239 MDVIVQTSLVDMYAKNGHLELASCVFRRMLYKNVISWSALISGFAQNGFAGNALQLVVDM 298

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK---------------------FG 101
              G  P+S ++V VL+A + +  L+L +S+HG +V+                       
Sbjct: 299 QSFGYKPDSVSLVSVLLACSQVGFLKLGKSVHGYIVRRLHFDCVSSTAVIDMYSKCGSLS 358

Query: 102 LESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
               +F+ +     +S NAI+A +  +   ++A+ LF   R + + P+  T  +++
Sbjct: 359 FARTVFDQISFRDSISWNAIIASYGIHGSGEEALSLFLQMRETNVKPDHATFASLL 414


>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Vitis vinifera]
          Length = 877

 Score =  250 bits (638), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 169/559 (30%), Positives = 267/559 (47%), Gaps = 32/559 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D    S LL  Y K  K+  +   F  +PEKN VSWS +I G   N      ++ F  M 
Sbjct: 208 DVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQ 267

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
            +G+  +  T   V  + AGL  L L   +HG  +K    +D                  
Sbjct: 268 KAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLS 327

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               LF  L N  L S NAI+ G+  +    +A+ +F   + SGL  + V++    R C 
Sbjct: 328 DAQKLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFRACA 387

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            +        +HGL++K     ++ V N++LDMY     L  A  +F EM  +D +SW  
Sbjct: 388 VIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNA 447

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++            L +F  M +S +  D     +++   A    L  G ++H +++   
Sbjct: 448 IIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSR 507

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           L  +  +  ++I MYSKCG ++ +  + +++ E+++VSW AIISG+     + EA   F 
Sbjct: 508 LGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFS 567

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           KM +   D  D+ T  +IL     L  +E+  Q+H    +        + + L+  YSKC
Sbjct: 568 KMLEMGVDP-DNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKC 626

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           GN+    ++FE+    RD V+WN ++ GY  +G GE AL ++  M      P+ +T+L++
Sbjct: 627 GNMQDFQLIFEKAPN-RDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAV 685

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L ACGH GL   GL  F+ M+    + P  EHY CVVD++ R+G +S A     +L+EGM
Sbjct: 686 LRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKAL----ELIEGM 741

Query: 522 ----GPNIWRALLSGCVLH 536
                  IWR LLS C +H
Sbjct: 742 PFEADAVIWRTLLSICKIH 760



 Score =  211 bits (538), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 162/563 (28%), Positives = 267/563 (47%), Gaps = 36/563 (6%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  D  + + +L  Y   G I  A+ LFD +PE++VVSW+ +I GY  NG H K +  F 
Sbjct: 104 PQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFL 163

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL-------------- 106
            M   G + +  T   VL + + L++      IHGL VK G + D+              
Sbjct: 164 QMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCK 223

Query: 107 --------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                   F  +     VS +AI+AG + N   +  + LF   + +G+  +  T  +V R
Sbjct: 224 KLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFR 283

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C  L +  L   +HG  +K     DV +  + LDMY    +L  A ++F  +   ++ S
Sbjct: 284 SCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQS 343

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAIL-GDLKRGKQLHAQV 277
           +  ++  +   +   +AL +FR ++KS +  D V+L       A++ GDL+ G Q+H   
Sbjct: 344 YNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFRACAVIKGDLE-GLQVHGLS 402

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           +    QS + ++N+I+ MY KCG L  +  VF ++  +  VSW AII+ + QNG   + L
Sbjct: 403 MKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTL 462

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
           + F+ M Q   +  D  T  S+L A     AL   +++H    ++       V   LI  
Sbjct: 463 SLFVWMLQSGMEP-DEFTYGSVLKACAGWQALNCGMEIHNRIIKSRLGLDSFVGIALIDM 521

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           YSKCG ++ A  + + +   + VVSWN II G+ +    E A   + KM E G  PD+ T
Sbjct: 522 YSKCGMMEKAEKLHDRLA-EQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFT 580

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL 517
           Y +IL+ C +      G  I  Q+I++ +++        +VD+ ++ G + D      +L
Sbjct: 581 YATILDTCANLVTVELGKQIHAQIIKK-ELQSDAYISSTLVDMYSKCGNMQDF-----QL 634

Query: 518 LEGMGPN----IWRALLSGCVLH 536
           +    PN     W A++ G   H
Sbjct: 635 IFEKAPNRDFVTWNAMVCGYAQH 657



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 128/500 (25%), Positives = 238/500 (47%), Gaps = 26/500 (5%)

Query: 12  LSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNS 71
           L  Y K   + +A+ LF+ +P  N+ S++ +I GY+ +    +++  F  +  SGL  + 
Sbjct: 317 LDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDE 376

Query: 72  FTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------------FEG 109
            ++ G   A A ++       +HGL +K   +S++                      FE 
Sbjct: 377 VSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEE 436

Query: 110 LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALC 169
           + +   VS NAI+A    N   ++ + LF +   SG+ P+  T  +V++ C    +    
Sbjct: 437 MVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCG 496

Query: 170 ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDF 229
             IH   IK  L LD  V  +++DMYS    ++ A ++   +  + V+SW  ++  F   
Sbjct: 497 MEIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQ 556

Query: 230 EYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLS 289
           + + +A K F +M +  +  D      ++   A L  ++ GKQ+HAQ++   LQS+  +S
Sbjct: 557 KQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYIS 616

Query: 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD 349
           ++++ MYSKCG++   + +F +   +  V+W A++ GY Q+G   EAL  F  M+ E   
Sbjct: 617 STLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVK 676

Query: 350 SVDSITLVSILTASGELAALEICLQ-LHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
             +  T +++L A G +  +E  L   H +    G        +C++    + G V  A 
Sbjct: 677 P-NHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKAL 735

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
            + E M F  D V W T++    ++G+ E A    + + +  E  DS+ Y+ + N   +A
Sbjct: 736 ELIEGMPFEADAVIWRTLLSICKIHGNVEVAEKAAYSILQL-EPEDSAAYVLLSNIYANA 794

Query: 469 GLTNDGLVIFNQMIEENKVK 488
           G+ N+ +    +M+  N +K
Sbjct: 795 GMWNE-VTKLRKMMRFNGLK 813



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 110/233 (47%), Gaps = 35/233 (15%)

Query: 270 GKQLHAQVVLGGLQSELRLSNSIIAMYSKC------------------------------ 299
           GKQ HA+++L   +  + ++N +I MY KC                              
Sbjct: 61  GKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGMPQRDTVSWNAMLFGYAG 120

Query: 300 -GDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVS 358
            GD+  ++ +F+ + E+ +VSW ++ISGY+ NG  R+ ++ F++M +  T   D  T   
Sbjct: 121 RGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGT-VFDRTTFAV 179

Query: 359 ILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLR 418
           +L +   L      +Q+HG+A + GF       + L+  Y+KC  +D +   F  M   +
Sbjct: 180 VLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMP-EK 238

Query: 419 DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLT 471
           + VSW+ II G   N      L L+ +M + G     ST+ S+  +C  AGL+
Sbjct: 239 NWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSC--AGLS 289


>gi|356546044|ref|XP_003541442.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Glycine max]
          Length = 628

 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 153/499 (30%), Positives = 252/499 (50%), Gaps = 42/499 (8%)

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           F    N  + + NA++AGF+ N L Q+A+ L+N  R  G+ P+  T   VIR C      
Sbjct: 89  FPTHHNKNVFAYNALIAGFLANALPQRALALYNQMRHLGIAPDKFTFPCVIRACGDDDDG 148

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
            +   IHGL  K+GL LDV V +++++ Y     +  A ++F E+  +DV+ W  M+  F
Sbjct: 149 FVVTKIHGLMFKVGLELDVFVGSALVNTYLKFRFVGEAYRVFEELPVRDVVLWNAMVNGF 208

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
                  +AL +FR M  + ++     +  ++S+ +++GD   G+ +H  V   G +S +
Sbjct: 209 AQIGRFEEALGVFRRMGGNGVVPCRYTVTGVLSIFSVMGDFDNGRAVHGFVTKMGYESGV 268

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            +SN++I MY KC  +  + SVF  + E  + SW +I+S + + G     L  F +M   
Sbjct: 269 VVSNALIDMYGKCKCVGDALSVFEMMDEIDIFSWNSIMSVHERCGDHYGTLRLFDRMMGS 328

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS--------VQNCLISSY 398
                D +T+ ++L A   LAAL    ++HG     G  +  S        + N L+  Y
Sbjct: 329 SRVQPDLVTVTTVLPACTHLAALMHGREIHGYMVVNGLAKEESHDVFDDVLLNNALMDMY 388

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
           +KCGN+  A +VF  M   +DV SWN +I GYG++G+G  AL ++ +M +   VP+  ++
Sbjct: 389 AKCGNMRDARMVFVNMR-EKDVASWNIMITGYGMHGYGGEALDIFSRMCQAQMVPNEISF 447

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
           + +L+AC HAG+  +GL   ++M  +  V PS EHY CV+D+L RAG L +A  L   + 
Sbjct: 448 VGLLSACSHAGMVKEGLGFLSEMESKYGVSPSIEHYTCVIDMLCRAGQLMEAYDLVLTMP 507

Query: 519 EGMGPNIWRALLSGCVLH---------------------------------VGRFQDAEA 545
               P  WR+LL+ C LH                                 VGR+++   
Sbjct: 508 FKADPVGWRSLLAACRLHNDTDLAEVAASKVIELEPDHCGNYVLMSNVYGVVGRYEEVLE 567

Query: 546 LRSGSQKKGIIKIPGISFL 564
            R   +++ + K PG S++
Sbjct: 568 WRYTMKQQNVKKRPGCSWI 586



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 143/529 (27%), Positives = 246/529 (46%), Gaps = 55/529 (10%)

Query: 5   PYNSSKLLSNYFKSGKIKEAENLFDEIP---EKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           P   + L++ Y K   I  +  +F+  P    KNV +++ +I G+  N   ++++  ++ 
Sbjct: 64  PLAITSLINMYSKCSLIDHSLRVFN-FPTHHNKNVFAYNALIAGFLANALPQRALALYNQ 122

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPYL---- 115
           M   G+ P+ FT   V+ A     +  +   IHGLM K GLE D+F G  L N YL    
Sbjct: 123 MRHLGIAPDKFTFPCVIRACGDDDDGFVVTKIHGLMFKVGLELDVFVGSALVNTYLKFRF 182

Query: 116 ----------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                           V  NA+V GF     F++A+ +F    G+G+VP   T+  V+  
Sbjct: 183 VGEAYRVFEELPVRDVVLWNAMVNGFAQIGRFEEALGVFRRMGGNGVVPCRYTVTGVLSI 242

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
              +G       +HG   K+G    V V+N+++DMY     +  A+ +F  M+  D+ SW
Sbjct: 243 FSVMGDFDNGRAVHGFVTKMGYESGVVVSNALIDMYGKCKCVGDALSVFEMMDEIDIFSW 302

Query: 220 TRMMGLFVDFEYAGD---ALKIF-REMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
             +M +    E  GD    L++F R M  SR+  D V +  ++     L  L  G+++H 
Sbjct: 303 NSIMSV---HERCGDHYGTLRLFDRMMGSSRVQPDLVTVTTVLPACTHLAALMHGREIHG 359

Query: 276 QVVLGGLQSE--------LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGY 327
            +V+ GL  E        + L+N+++ MY+KCG++  +R VF  + EK + SW  +I+GY
Sbjct: 360 YMVVNGLAKEESHDVFDDVLLNNALMDMYAKCGNMRDARMVFVNMREKDVASWNIMITGY 419

Query: 328 VQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAF----EAG 383
             +G   EAL+ F +M Q +    + I+ V +L+A      ++      G+ F    E+ 
Sbjct: 420 GMHGYGGEALDIFSRMCQAQMVP-NEISFVGLLSACSHAGMVK-----EGLGFLSEMESK 473

Query: 384 FPRYRSVQN--CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALA 441
           +    S+++  C+I    + G +  AY +   M F  D V W +++    ++   + A  
Sbjct: 474 YGVSPSIEHYTCVIDMLCRAGQLMEAYDLVLTMPFKADPVGWRSLLAACRLHNDTDLAEV 533

Query: 442 LYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEEN-KVKP 489
              K+ E  E      Y+ + N  G  G   + L     M ++N K +P
Sbjct: 534 AASKVIEL-EPDHCGNYVLMSNVYGVVGRYEEVLEWRYTMKQQNVKKRP 581



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 170/357 (47%), Gaps = 33/357 (9%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  S L++ Y K   + EA  +F+E+P ++VV W+ +++G++  G  E+++  F  M
Sbjct: 165 LDVFVGSALVNTYLKFRFVGEAYRVFEELPVRDVVLWNAMVNGFAQIGRFEEALGVFRRM 224

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES------------------ 104
             +G++P  +T+ GVL   + + + +  R++HG + K G ES                  
Sbjct: 225 GGNGVVPCRYTVTGVLSIFSVMGDFDNGRAVHGFVTKMGYESGVVVSNALIDMYGKCKCV 284

Query: 105 ----DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLV-PNAVTMLTVIRG 159
                +FE +    + S N+I++           + LF+   GS  V P+ VT+ TV+  
Sbjct: 285 GDALSVFEMMDEIDIFSWNSIMSVHERCGDHYGTLRLFDRMMGSSRVQPDLVTVTTVLPA 344

Query: 160 CVALGSRALCELIHGLTIKLGL--------ILDVSVNNSVLDMYSCLMDLDAAIQIFREM 211
           C  L +      IHG  +  GL          DV +NN+++DMY+   ++  A  +F  M
Sbjct: 345 CTHLAALMHGREIHGYMVVNGLAKEESHDVFDDVLLNNALMDMYAKCGNMRDARMVFVNM 404

Query: 212 ECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGK 271
             KDV SW  M+  +    Y G+AL IF  M +++++ + ++ + L+S  +  G +K G 
Sbjct: 405 REKDVASWNIMITGYGMHGYGGEALDIFSRMCQAQMVPNEISFVGLLSACSHAGMVKEGL 464

Query: 272 QLHAQVVLG-GLQSELRLSNSIIAMYSKCGDL-DSSRSVFNQITEKSLVSWTAIISG 326
              +++    G+   +     +I M  + G L ++   V     +   V W ++++ 
Sbjct: 465 GFLSEMESKYGVSPSIEHYTCVIDMLCRAGQLMEAYDLVLTMPFKADPVGWRSLLAA 521



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 124/251 (49%), Gaps = 11/251 (4%)

Query: 265 GDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE--KSLVSWTA 322
            +L +GK+LH  ++            S+I MYSKC  +D S  VFN  T   K++ ++ A
Sbjct: 43  ANLSKGKELHTHLLKNAFFGSPLAITSLINMYSKCSLIDHSLRVFNFPTHHNKNVFAYNA 102

Query: 323 IISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEA 382
           +I+G++ N   + AL  + +MR     + D  T   ++ A G+     +  ++HG+ F+ 
Sbjct: 103 LIAGFLANALPQRALALYNQMRHLGI-APDKFTFPCVIRACGDDDDGFVVTKIHGLMFKV 161

Query: 383 GFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALAL 442
           G      V + L+++Y K   V  AY VFEE+  +RDVV WN ++ G+   G  E AL +
Sbjct: 162 GLELDVFVGSALVNTYLKFRFVGEAYRVFEELP-VRDVVLWNAMVNGFAQIGRFEEALGV 220

Query: 443 YHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIF---NQMIEENKVKPSQEHYGCVVD 499
           + +M   G VP   T   +L+     G  ++G  +     +M  E+ V  S      ++D
Sbjct: 221 FRRMGGNGVVPCRYTVTGVLSIFSVMGDFDNGRAVHGFVTKMGYESGVVVSN----ALID 276

Query: 500 LLARAGCLSDA 510
           +  +  C+ DA
Sbjct: 277 MYGKCKCVGDA 287


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 150/495 (30%), Positives = 259/495 (52%), Gaps = 39/495 (7%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F  +  P   + N ++ GF   +   +A+LLF     + + P+  T   +++ C  L +
Sbjct: 80  IFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQA 139

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
            +  E IH L +K G      V N+++ MY+   +++ A ++F EM  ++V +W  M   
Sbjct: 140 LSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAG 199

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +       + +K+F EM +  I  D V L+++++    L DL+ G+ ++  V   GL+  
Sbjct: 200 YTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGN 259

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
             L  S++ MY+KCG +D++R +F+Q+  + +V+W+A+ISGY Q    REAL+ F +M++
Sbjct: 260 PTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQK 319

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
              D  + IT+VSIL++   L ALE    +H    +       ++   L+  Y+KCG+V+
Sbjct: 320 ANIDP-NEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVE 378

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            +  VF +M  +++V+SW  +I G   NG G+ AL  ++ M E    P+  T++ +L+AC
Sbjct: 379 SSIEVFGKMP-VKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSAC 437

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN- 524
            HAGL ++G  +F  M  +  ++P  EHYGC+VD+L RAG + +A      +   + PN 
Sbjct: 438 SHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNM--PIQPNA 495

Query: 525 -IWRALLSGCVLH---------------------------------VGRFQDAEALRSGS 550
            IWR LL+ C +H                                 VGR++DA  +R   
Sbjct: 496 VIWRTLLASCKVHKNVEIGEESLKQLIILEPTHSGDYILLSNIYASVGRWEDALKVRGEM 555

Query: 551 QKKGIIKIPGISFLN 565
           ++KGI K PG S + 
Sbjct: 556 KEKGIKKTPGCSLIE 570



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 102/348 (29%), Positives = 190/348 (54%), Gaps = 5/348 (1%)

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLM--DLDAAIQIFREMECKDVISWTRMMGLFVDF 229
           IH   IK  L+L   V  ++L+  + L+   +D A+ IFR+++  D  ++  M+  F   
Sbjct: 43  IHAHLIKTRLLLKPKVAENLLESAAILLPTSMDYAVSIFRQIDEPDSPAYNIMIRGFTLK 102

Query: 230 EYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLS 289
           +   +A+ +F+EM ++ +  D      ++ V + L  L  G+Q+HA ++  G  S   + 
Sbjct: 103 QSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSEGEQIHALIMKCGFGSHGFVK 162

Query: 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD 349
           N++I MY+ CG+++ +R VF++++E+++ +W ++ +GY ++G   E +  F +M  E   
Sbjct: 163 NTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEM-LELDI 221

Query: 350 SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYI 409
             D +TLVS+LTA G LA LE+   ++    E G     ++   L+  Y+KCG VD A  
Sbjct: 222 RFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARR 281

Query: 410 VFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAG 469
           +F++M   RDVV+W+ +I GY        AL L+H+M +    P+  T +SIL++C   G
Sbjct: 282 LFDQMD-RRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEITMVSILSSCAVLG 340

Query: 470 LTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL 517
               G  + +  I++ ++K +      ++D  A+ G +  +  + GK+
Sbjct: 341 ALETGKWV-HFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKM 387



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 116/489 (23%), Positives = 236/489 (48%), Gaps = 35/489 (7%)

Query: 24  AENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAG 83
           A ++F +I E +  +++I+I G+++     +++  F  M  + + P+ FT   +L   + 
Sbjct: 77  AVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSR 136

Query: 84  LQNLELARSIHGLMVKFGLESD----------------------LFEGLKNPYLVSCNAI 121
           LQ L     IH L++K G  S                       +F+ +    + + N++
Sbjct: 137 LQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSM 196

Query: 122 VAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGL 181
            AG+  +  +++ V LF+      +  + VT+++V+  C  L    L E I+    + GL
Sbjct: 197 FAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGL 256

Query: 182 ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFRE 241
             + ++  S++DMY+    +D A ++F +M+ +DV++W+ M+  +       +AL +F E
Sbjct: 257 KGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHE 316

Query: 242 MRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGD 301
           M+K+ I  + + +++++S  A+LG L+ GK +H  +    ++  + L  +++  Y+KCG 
Sbjct: 317 MQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGS 376

Query: 302 LDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILT 361
           ++SS  VF ++  K+++SWT +I G   NG  ++AL  F  M ++  +  D +T + +L+
Sbjct: 377 VESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPND-VTFIGVLS 435

Query: 362 ASGELAALEICLQLHGIAFEAGF---PRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLR 418
           A      ++    L  ++    F   PR      C++    + G ++ A+   + M    
Sbjct: 436 ACSHAGLVDEGRDLF-VSMSRDFGIEPRIEHY-GCMVDILGRAGLIEEAFQFIKNMPIQP 493

Query: 419 DVVSWNTIIYGYGVNGH---GETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGL 475
           + V W T++    V+ +   GE +L    K     E   S  Y+ + N     G   D L
Sbjct: 494 NAVIWRTLLASCKVHKNVEIGEESL----KQLIILEPTHSGDYILLSNIYASVGRWEDAL 549

Query: 476 VIFNQMIEE 484
            +  +M E+
Sbjct: 550 KVRGEMKEK 558



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 90/403 (22%), Positives = 192/403 (47%), Gaps = 32/403 (7%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+  Y   G+++ A  +FDE+ E+NV +W+ +  GY+ +G  E+ +K F  M+   +  +
Sbjct: 165 LIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFD 224

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFE 108
             T+V VL A   L +LEL   I+  + + GL+ +                      LF+
Sbjct: 225 EVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFD 284

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            +    +V+ +A+++G+      ++A+ LF+  + + + PN +TM++++  C  LG+   
Sbjct: 285 QMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALET 344

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
            + +H    K  + L V++  +++D Y+    ++++I++F +M  K+V+SWT ++     
Sbjct: 345 GKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLAS 404

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG-GLQSELR 287
                 AL+ F  M +  +  + V  + ++S  +  G +  G+ L   +    G++  + 
Sbjct: 405 NGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIE 464

Query: 288 LSNSIIAMYSKCGDLDSS-RSVFNQITEKSLVSWTAIISG---YVQNGCAREALNQFIKM 343
               ++ +  + G ++ + + + N   + + V W  +++    +       E+L Q I +
Sbjct: 465 HYGCMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLASCKVHKNVEIGEESLKQLIIL 524

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPR 386
             E T S D I L +I  + G     E  L++ G   E G  +
Sbjct: 525 --EPTHSGDYILLSNIYASVGR---WEDALKVRGEMKEKGIKK 562



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/251 (22%), Positives = 109/251 (43%), Gaps = 36/251 (14%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           +P   + L+  Y K G++  A  LFD++  ++VV+WS +I GYS      +++  F  M 
Sbjct: 259 NPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQ 318

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIH--------GLMVKFG------------LE 103
            + + PN  TMV +L + A L  LE  + +H         L V  G            +E
Sbjct: 319 KANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVE 378

Query: 104 S--DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
           S  ++F  +    ++S   ++ G  +N   ++A+  F       + PN VT + V+  C 
Sbjct: 379 SSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACS 438

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMD-------LDAAIQIFREMECK 214
             G      +  G  + + +  D  +   + + Y C++D       ++ A Q  + M  +
Sbjct: 439 HAGL-----VDEGRDLFVSMSRDFGIEPRI-EHYGCMVDILGRAGLIEEAFQFIKNMPIQ 492

Query: 215 -DVISWTRMMG 224
            + + W  ++ 
Sbjct: 493 PNAVIWRTLLA 503


>gi|115479139|ref|NP_001063163.1| Os09g0413300 [Oryza sativa Japonica Group]
 gi|113631396|dbj|BAF25077.1| Os09g0413300 [Oryza sativa Japonica Group]
          Length = 810

 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 176/583 (30%), Positives = 292/583 (50%), Gaps = 39/583 (6%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  D +  + L++ Y K G +  A   F  +P +NVVSW+  I G+  +     +M    
Sbjct: 201 PEYDVFVGTSLVNMYAKCGDMGAAMREFWRMPVRNVVSWTTAIAGFVQDDEPVSAMLLLR 260

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--LFEGLKNPYL--- 115
            M+ +G+  N +T   +L+A A +  +  A  IHG+++K  +  D  + E L + Y    
Sbjct: 261 EMVRNGVAINKYTATSILLACAQMSMVREASQIHGMVLKTEMYLDCVVKEALISTYTNFG 320

Query: 116 --------------VSCNAIVAGFI----NNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
                         VS  +I + FI    N+ L +   LL   F   GL PN     +V 
Sbjct: 321 FIELSEKVFEEAGTVSNRSIWSAFISGVSNHSLLRSVQLLRRMFH-QGLRPNDKCYASVF 379

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
               ++ S      +H   IK G I  + V +++  MYS   ++  + ++F EM+ +D +
Sbjct: 380 S---SVNSIEFGGQLHSSAIKEGFIHGILVGSALSTMYSRCDNVQDSYKVFEEMQERDGV 436

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           SWT M+  F    ++ +A   FR M       D V+L  ++S       L +GK++H   
Sbjct: 437 SWTAMVAGFATHGHSVEAFLTFRNMILDGFKPDHVSLTAILSACNRPECLLKGKEVHGHT 496

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           +    ++   +++  I+MYSKC  + ++R +F+    K  V W+++ISGY  NGC  EA+
Sbjct: 497 LRVYGETTF-INDCFISMYSKCQGVQTARRIFDATPRKDQVMWSSMISGYATNGCGEEAI 555

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
           + F ++    +  +DS    SIL+   ++A    C  LHG A +AG    +SV + L+  
Sbjct: 556 SLF-QLMVAASIRIDSYICSSILSLCADIARPFYCKPLHGYAIKAGILSDQSVSSSLVKV 614

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           YS+ GN+D +  VF+E+  + D+V+W TII GY  +G  + ALA++  M + G  PD+  
Sbjct: 615 YSRSGNMDDSRKVFDEIS-VPDLVAWTTIIDGYAQHGSSQNALAMFDLMVQLGVRPDTVV 673

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL 517
            +S+L+AC   GL   G   FN M     V+P  +HY C+VDLL R+G L++A      +
Sbjct: 674 LVSVLSACSRNGLVEQGFNYFNSMRTAYGVEPELQHYCCMVDLLGRSGRLAEAKYFVDSM 733

Query: 518 LEGMGPN--IWRALLSGCVLH----VGRFQDAEALRSGSQKKG 554
              M P+  +W  LL+ C +H    +GRF + + +R G+   G
Sbjct: 734 --PMKPDLMVWSTLLAACRVHDDTVLGRFVENK-IREGNYDSG 773



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 124/473 (26%), Positives = 214/473 (45%), Gaps = 30/473 (6%)

Query: 17  KSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVG 76
           KSG++++A  +F +    + V W+  + G   NG    +++ F  M+     PNSFT  G
Sbjct: 116 KSGRLRDALRVFADGDPSSAVCWNAAVSGAVRNGEGGLAVEMFRDMVWGSCEPNSFTYSG 175

Query: 77  VLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPY-------------------- 114
            L A A  + L + R++HGL+++   E D+F G  L N Y                    
Sbjct: 176 ALSACAAGEELSVGRAVHGLVLRRDPEYDVFVGTSLVNMYAKCGDMGAAMREFWRMPVRN 235

Query: 115 LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHG 174
           +VS    +AGF+ +     A+LL      +G+  N  T  +++  C  +        IHG
Sbjct: 236 VVSWTTAIAGFVQDDEPVSAMLLLREMVRNGVAINKYTATSILLACAQMSMVREASQIHG 295

Query: 175 LTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS-WTRMMGLFVDFEYAG 233
           + +K  + LD  V  +++  Y+    ++ + ++F E       S W+  +    +     
Sbjct: 296 MVLKTEMYLDCVVKEALISTYTNFGFIELSEKVFEEAGTVSNRSIWSAFISGVSNHSLLR 355

Query: 234 DALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSII 293
               + R   +     D        SVN+I    + G QLH+  +  G    + + +++ 
Sbjct: 356 SVQLLRRMFHQGLRPNDKCYASVFSSVNSI----EFGGQLHSSAIKEGFIHGILVGSALS 411

Query: 294 AMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDS 353
            MYS+C ++  S  VF ++ E+  VSWTA+++G+  +G + EA   F  M  +     D 
Sbjct: 412 TMYSRCDNVQDSYKVFEEMQERDGVSWTAMVAGFATHGHSVEAFLTFRNMILDGFKP-DH 470

Query: 354 ITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEE 413
           ++L +IL+A      L    ++HG      +     + +C IS YSKC  V  A  +F+ 
Sbjct: 471 VSLTAILSACNRPECLLKGKEVHGHTLRV-YGETTFINDCFISMYSKCQGVQTARRIFDA 529

Query: 414 MGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
               +D V W+++I GY  NG GE A++L+  M       DS    SIL+ C 
Sbjct: 530 TP-RKDQVMWSSMISGYATNGCGEEAISLFQLMVAASIRIDSYICSSILSLCA 581



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 132/514 (25%), Positives = 231/514 (44%), Gaps = 60/514 (11%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPE-KNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLP 69
           L+S Y   G I+ +E +F+E     N   WS  I G S N    +S++    M   GL P
Sbjct: 312 LISTYTNFGFIELSEKVFEEAGTVSNRSIWSAFISGVS-NHSLLRSVQLLRRMFHQGLRP 370

Query: 70  NS------FTMVGVLVAAAGLQNLELARS-IHGLMVKFGLES------------DLFEGL 110
           N       F+ V  +     L +  +    IHG++V   L +             +FE +
Sbjct: 371 NDKCYASVFSSVNSIEFGGQLHSSAIKEGFIHGILVGSALSTMYSRCDNVQDSYKVFEEM 430

Query: 111 KNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCE 170
           +    VS  A+VAGF  +    +A L F      G  P+ V++  ++  C    +R  C 
Sbjct: 431 QERDGVSWTAMVAGFATHGHSVEAFLTFRNMILDGFKPDHVSLTAILSAC----NRPECL 486

Query: 171 L----IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
           L    +HG T+++       +N+  + MYS    +  A +IF     KD + W+ M+  +
Sbjct: 487 LKGKEVHGHTLRV-YGETTFINDCFISMYSKCQGVQTARRIFDATPRKDQVMWSSMISGY 545

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
                  +A+ +F+ M  + I  D+    +++S+ A +      K LH   +  G+ S+ 
Sbjct: 546 ATNGCGEEAISLFQLMVAASIRIDSYICSSILSLCADIARPFYCKPLHGYAIKAGILSDQ 605

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            +S+S++ +YS+ G++D SR VF++I+   LV+WT II GY Q+G ++ AL  F  M Q 
Sbjct: 606 SVSSSLVKVYSRSGNMDDSRKVFDEISVPDLVAWTTIIDGYAQHGSSQNALAMFDLMVQL 665

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN------------CL 394
                D++ LVS+L+A             +G+  E GF  + S++             C+
Sbjct: 666 GVRP-DTVVLVSVLSACSR----------NGLV-EQGFNYFNSMRTAYGVEPELQHYCCM 713

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALY--HKMTETGEV 452
           +    + G +  A    + M    D++ W+T++    V  H +T L  +  +K+ E    
Sbjct: 714 VDLLGRSGRLAEAKYFVDSMPMKPDLMVWSTLLAACRV--HDDTVLGRFVENKIREGNY- 770

Query: 453 PDSSTYLSILNACGHAGLTNDGLVIFNQMIEENK 486
            DS ++ ++ N   ++G   +   I   M   NK
Sbjct: 771 -DSGSFATLSNILANSGDWEEVARIRKTMKGVNK 803



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 147/298 (49%), Gaps = 8/298 (2%)

Query: 170 ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDF 229
           E ++    K GL  +  V   ++D+ +    L  A+++F + +    + W   +   V  
Sbjct: 89  EQVYCAAWKDGLSGNAYVCTGMVDLLAKSGRLRDALRVFADGDPSSAVCWNAAVSGAVRN 148

Query: 230 EYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLS 289
              G A+++FR+M       ++      +S  A   +L  G+ +H  V+    + ++ + 
Sbjct: 149 GEGGLAVEMFRDMVWGSCEPNSFTYSGALSACAAGEELSVGRAVHGLVLRRDPEYDVFVG 208

Query: 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD 349
            S++ MY+KCGD+ ++   F ++  +++VSWT  I+G+VQ+    E ++  + +R+   +
Sbjct: 209 TSLVNMYAKCGDMGAAMREFWRMPVRNVVSWTTAIAGFVQDD---EPVSAMLLLREMVRN 265

Query: 350 --SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
             +++  T  SIL A  +++ +    Q+HG+  +        V+  LIS+Y+  G ++L+
Sbjct: 266 GVAINKYTATSILLACAQMSMVREASQIHGMVLKTEMYLDCVVKEALISTYTNFGFIELS 325

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHG-ETALALYHKMTETGEVPDSSTYLSILNA 464
             VFEE G + +   W+  I   GV+ H    ++ L  +M   G  P+   Y S+ ++
Sbjct: 326 EKVFEEAGTVSNRSIWSAFI--SGVSNHSLLRSVQLLRRMFHQGLRPNDKCYASVFSS 381



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 117/276 (42%), Gaps = 23/276 (8%)

Query: 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
           +Q++      GL     +   ++ + +K G L  +  VF      S V W A +SG V+N
Sbjct: 89  EQVYCAAWKDGLSGNAYVCTGMVDLLAKSGRLRDALRVFADGDPSSAVCWNAAVSGAVRN 148

Query: 331 GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS- 389
           G    A+  F  M     +  +S T    L+A      L +   +HG+      P Y   
Sbjct: 149 GEGGLAVEMFRDMVWGSCEP-NSFTYSGALSACAAGEELSVGRAVHGLVLRRD-PEYDVF 206

Query: 390 VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
           V   L++ Y+KCG++  A   F  M  +R+VVSW T I G+  +    +A+ L  +M   
Sbjct: 207 VGTSLVNMYAKCGDMGAAMREFWRMP-VRNVVSWTTAIAGFVQDDEPVSAMLLLREMVRN 265

Query: 450 GEVPDSSTYLSILNACGHAGLTND-----GLVIFNQMIEENKVKPSQEHYGCVVDLLARA 504
           G   +  T  SIL AC    +  +     G+V+  +M  +  VK +      ++      
Sbjct: 266 GVAINKYTATSILLACAQMSMVREASQIHGMVLKTEMYLDCVVKEA------LISTYTNF 319

Query: 505 GCLSDASGLAGKLLEGMGP----NIWRALLSGCVLH 536
           G +     L+ K+ E  G     +IW A +SG   H
Sbjct: 320 GFIE----LSEKVFEEAGTVSNRSIWSAFISGVSNH 351


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 170/561 (30%), Positives = 278/561 (49%), Gaps = 36/561 (6%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + L+  Y K G + E   +F+ +P+KNVV+W+ ++ G +    H + M  F  M   G+ 
Sbjct: 139 TSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIW 198

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY------------ 114
           PN FT   VL A A    L+L + +H   VKFG  S +F    L N Y            
Sbjct: 199 PNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSV 258

Query: 115 --------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
                   +VS N ++AG   N+   +A+ LF+  R +       T  TVI+ C  L   
Sbjct: 259 FNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQL 318

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME-CKDVISWTRMMGL 225
           AL   +H   +K G  L  +V  ++ D YS   +L  A+ IF      ++V+SWT ++  
Sbjct: 319 ALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISG 378

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVN-AILGDLKRGKQLHAQVVLGGLQS 284
            +       A+ +F  MR+ R++ +      ++  + +IL       Q+HAQV+    Q 
Sbjct: 379 CIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSILP-----PQIHAQVIKTNYQH 433

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
              +  +++A YSK G  + + S+F  I +K +V+W+A++S + Q G    A   F KM 
Sbjct: 434 IPFVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMA 493

Query: 345 QEKTDSVDSITLVSILTASG-ELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
            +     +  T+ S++ A     A ++   Q H I+ +  +     V + L+S YS+ GN
Sbjct: 494 IQGIKP-NEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGN 552

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           +D A IVFE     RD+VSWN++I GY  +G+   A+  + +M  +G   D  T+L+++ 
Sbjct: 553 IDSAQIVFERQTD-RDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIM 611

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
            C H GL  +G   F+ M+ ++K+ P+ EHY C+VDL +RAG L +   L   +    G 
Sbjct: 612 GCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGA 671

Query: 524 NIWRALLSGCVLH----VGRF 540
            +WR LL  C +H    +G+F
Sbjct: 672 MVWRTLLGACRVHKNVELGKF 692



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 143/525 (27%), Positives = 233/525 (44%), Gaps = 60/525 (11%)

Query: 101 GLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
           G    L E  +    V  N ++  +    +  + +  F+  R  G++ ++ T+  V++ C
Sbjct: 50  GARYPLDEIPRRDAAVGANRVLFDYARRGMVLEVLDQFSVARRGGVLVDSATLSCVLKAC 109

Query: 161 VALGSRALCELIHGLTIKLGLIL-DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
            ++  R L E +H L +K G    +VS   S++DMY     +   I++F  M  K+V++W
Sbjct: 110 RSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTW 169

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           T ++      +   + + +F  MR   I  +     +++S  A  G L  G+++HAQ V 
Sbjct: 170 TSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVK 229

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G +S + + NS++ MY+KCG ++ ++SVFN +  + +VSW  +++G   N C  EAL  
Sbjct: 230 FGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQL 289

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           F + R        S T  +++     L  L +  QLH    + GF    +V   L  +YS
Sbjct: 290 FHESRATMGKMTQS-TYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYS 348

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY- 458
           KCG +  A  +F      R+VVSW  II G   NG    A+ L+ +M E   +P+  TY 
Sbjct: 349 KCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYS 408

Query: 459 ------LSILNACGHA------------------------GLTNDGLVIFNQMIEENKVK 488
                 LSIL    HA                        G T D L IF +MIE+  V 
Sbjct: 409 AMLKASLSILPPQIHAQVIKTNYQHIPFVGTALLASYSKFGSTEDALSIF-KMIEQKDVV 467

Query: 489 PSQEHYGCVVDLLARAGCLSDASGLAGKL-LEGMGPNIW--RALLSGCVLHVG------- 538
                +  ++   A+AG    A+ L  K+ ++G+ PN +   +++  C            
Sbjct: 468 A----WSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQ 523

Query: 539 --------RFQDA----EALRSGSQKKGIIKIPGISFLNSTSRDF 571
                   R+ DA     AL S   +KG I    I F   T RD 
Sbjct: 524 FHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQTDRDL 568



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 115/251 (45%), Gaps = 37/251 (14%)

Query: 5   PYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML 64
           P+  + LL++Y K G  ++A ++F  I +K+VV+WS ++  ++  G  E +   F+ M +
Sbjct: 435 PFVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAI 494

Query: 65  SGLLPNSFTMVGVLVA-AAGLQNLELARSIHGLMVKFGLESDL----------------- 106
            G+ PN FT+  V+ A A     ++  R  H + +K+     +                 
Sbjct: 495 QGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNID 554

Query: 107 -----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                FE   +  LVS N++++G+  +    +A+  F     SG+  + VT L VI GC 
Sbjct: 555 SAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCT 614

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMD-------LDAAIQIFREME-C 213
             G      ++ G      ++ D  +N + ++ Y+C++D       LD  + + R+M   
Sbjct: 615 HNGL-----VVEGQQYFDSMVRDHKINPT-MEHYACMVDLYSRAGKLDETMSLIRDMPFP 668

Query: 214 KDVISWTRMMG 224
              + W  ++G
Sbjct: 669 AGAMVWRTLLG 679


>gi|296085462|emb|CBI29194.3| unnamed protein product [Vitis vinifera]
          Length = 862

 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 178/595 (29%), Positives = 290/595 (48%), Gaps = 45/595 (7%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + L+S Y +   I+ AE LF E+  K++VSW+ ++ G ++N    ++      M L G +
Sbjct: 256 NSLISLYSQCRDIQAAEILFKEMKYKDIVSWNAMLDGLALNQRIWEAFDLLHEMQLLGCV 315

Query: 69  -PNSFTMVGVLVAAAGLQNLELARSIHGLMVK--FGLESDLFEGLKNPYLVSCNAIVAGF 125
            P+S T+V ++   A L  L   R++HGL ++   GL+  +   L + Y   C  +    
Sbjct: 316 QPDSVTVVIIIPLCAELMLLREGRAVHGLTLRREMGLDFSVTNSLIDMY-SKCKDVKRA- 373

Query: 126 INNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDV 185
            +N   ++A  LF     S    +  T+L ++  C +       E IH   +KLG   + 
Sbjct: 374 EHNGHSREAQHLFRQLLQSYSQCSLSTLLAILPSCDSSEFLQFGESIHCWQLKLGFANNP 433

Query: 186 SVNNSVLDMYSCLMDLDAAIQIFREMECK-DVISWTRMMGLFVDFEYAGDALKIFREMRK 244
              NS++ MY    DL A   + + +    D++ W  +M       +  +ALK F  MR+
Sbjct: 434 LAVNSLMLMYINCGDLVACFSLLQTVSAAADIVCWNTVMAGCTQNGHFWEALKAFNLMRQ 493

Query: 245 SRIIC-DTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLD 303
              +C D+VAL N+IS    L  L  G  LH   +   ++S++R+ N++I MY +CG+++
Sbjct: 494 DPDVCHDSVALFNVISACGNLELLFAGGSLHGLALKTLMESDIRVQNALITMYGRCGEIE 553

Query: 304 SSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTAS 363
           ++R +F     ++L SW  +IS + QN   R AL  F  +  E  +    IT+V IL+A 
Sbjct: 554 NARIIFGFSCNRNLCSWNCMISAFSQNKDGRRALELFCHIEFEPNE----ITIVGILSAC 609

Query: 364 GELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSW 423
            +L  L    Q+HG    +       V   L   YS CG +D A+ +F+     R V +W
Sbjct: 610 TQLGVLRHGKQIHGHVIRSRLQGNSFVSAALEDMYSNCGRLDTAFQIFQSSP-ERSVAAW 668

Query: 424 NTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIE 483
           N++I  +G + +G  A+ L+H+M E G  P  ST++S+L+AC H+GL N+GL  ++ M+E
Sbjct: 669 NSMISAFGFHSNGGKAIELFHEMRECGTRPTKSTFISLLSACSHSGLVNEGLWYYSNMLE 728

Query: 484 ENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH------- 536
              V+   EH+ C+VD+L RAG L +A     ++     P +W ALLS C  H       
Sbjct: 729 LFNVEADTEHHVCMVDMLGRAGRLGEAYEFIRQMPTQPEPGVWGALLSACSYHGDLKMGR 788

Query: 537 --------------------------VGRFQDAEALRSGSQKKGIIKIPGISFLN 565
                                      GR++DA  LR   Q KG+ K    S ++
Sbjct: 789 EVAELLFELEPENVGYYISLSNMYVAAGRWKDAVELRRIIQDKGLKKPAAYSLID 843



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 145/510 (28%), Positives = 243/510 (47%), Gaps = 60/510 (11%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L+  Y K G++  +E +F  +  ++++SW+ ++ G + N + +KS+  F  M 
Sbjct: 148 DSFLCNALIDMYAKCGELSSSECVFGGMEYRDIISWNSMMRGCAYNNYPKKSLWYFKKMA 207

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE-------------------- 103
            S    ++ ++   + A+A L  L   + IHG  +K G +                    
Sbjct: 208 YSSEQADNVSLTCAVSASALLGELSFGQVIHGWGIKLGYKDISHNSFENSLISLYSQCRD 267

Query: 104 ----SDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLV-PNAVTMLTVIR 158
                 LF+ +K   +VS NA++ G   N+   +A  L +  +  G V P++VT++ +I 
Sbjct: 268 IQAAEILFKEMKYKDIVSWNAMLDGLALNQRIWEAFDLLHEMQLLGCVQPDSVTVVIIIP 327

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C  L        +HGLT++  + LD SV NS++DMYS               +CKDV  
Sbjct: 328 LCAELMLLREGRAVHGLTLRREMGLDFSVTNSLIDMYS---------------KCKDVKR 372

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA-QV 277
                G      ++ +A  +FR++ +S   C    LL ++        L+ G+ +H  Q+
Sbjct: 373 -AEHNG------HSREAQHLFRQLLQSYSQCSLSTLLAILPSCDSSEFLQFGESIHCWQL 425

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKS-LVSWTAIISGYVQNGCAREA 336
            LG   + L + NS++ MY  CGDL +  S+   ++  + +V W  +++G  QNG   EA
Sbjct: 426 KLGFANNPLAV-NSLMLMYINCGDLVACFSLLQTVSAAADIVCWNTVMAGCTQNGHFWEA 484

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
           L  F  MRQ+     DS+ L ++++A G L  L     LHG+A +        VQN LI+
Sbjct: 485 LKAFNLMRQDPDVCHDSVALFNVISACGNLELLFAGGSLHGLALKTLMESDIRVQNALIT 544

Query: 397 SYSKCGNVDLAYIVFEEMGFL--RDVVSWNTIIYGYGVNGHGETALALY-HKMTETGEVP 453
            Y +CG ++ A I+F   GF   R++ SWN +I  +  N  G  AL L+ H   E    P
Sbjct: 545 MYGRCGEIENARIIF---GFSCNRNLCSWNCMISAFSQNKDGRRALELFCHIEFE----P 597

Query: 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIE 483
           +  T + IL+AC   G+   G  I   +I 
Sbjct: 598 NEITIVGILSACTQLGVLRHGKQIHGHVIR 627



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 99/324 (30%), Positives = 171/324 (52%), Gaps = 5/324 (1%)

Query: 157 IRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
           I+   A  +     + H L  K+G +  +  + S+L  YS   D  ++  +F E+  +DV
Sbjct: 20  IKSFAARPTNVTASIAHCLAFKMGALAHLPTSTSLLTAYSRAADFSSSWALFDEILYRDV 79

Query: 217 ISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQ 276
           I W  M+   V+ +  G A+ +F E+    +  D+  LL ++S ++ +G+L +G+ LH  
Sbjct: 80  ILWNAMITASVENQCFGVAVNLFVELMGEGVGLDSTTLLIVVSASSHMGNLTQGRVLHGI 139

Query: 277 VVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
               GL S+  L N++I MY+KCG+L SS  VF  +  + ++SW +++ G   N   +++
Sbjct: 140 SFKTGLLSDSFLCNALIDMYAKCGELSSSECVFGGMEYRDIISWNSMMRGCAYNNYPKKS 199

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFP--RYRSVQNCL 394
           L  F KM    ++  D+++L   ++AS  L  L     +HG   + G+    + S +N L
Sbjct: 200 LWYFKKMAY-SSEQADNVSLTCAVSASALLGELSFGQVIHGWGIKLGYKDISHNSFENSL 258

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV-P 453
           IS YS+C ++  A I+F+EM + +D+VSWN ++ G  +N     A  L H+M   G V P
Sbjct: 259 ISLYSQCRDIQAAEILFKEMKY-KDIVSWNAMLDGLALNQRIWEAFDLLHEMQLLGCVQP 317

Query: 454 DSSTYLSILNACGHAGLTNDGLVI 477
           DS T + I+  C    L  +G  +
Sbjct: 318 DSVTVVIIIPLCAELMLLREGRAV 341



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 130/513 (25%), Positives = 238/513 (46%), Gaps = 54/513 (10%)

Query: 7   NSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSG 66
            S+ LL+ Y ++     +  LFDEI  ++V+ W+ +I     N     ++  F  +M  G
Sbjct: 50  TSTSLLTAYSRAADFSSSWALFDEILYRDVILWNAMITASVENQCFGVAVNLFVELMGEG 109

Query: 67  LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--------------------- 105
           +  +S T++ V+ A++ + NL   R +HG+  K GL SD                     
Sbjct: 110 VGLDSTTLLIVVSASSHMGNLTQGRVLHGISFKTGLLSDSFLCNALIDMYAKCGELSSSE 169

Query: 106 -LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
            +F G++   ++S N+++ G   N   ++++  F     S    + V++   +     LG
Sbjct: 170 CVFGGMEYRDIISWNSMMRGCAYNNYPKKSLWYFKKMAYSSEQADNVSLTCAVSASALLG 229

Query: 165 SRALCELIHGLTIKLGL--ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
             +  ++IHG  IKLG   I   S  NS++ +YS   D+ AA  +F+EM+ KD++SW  M
Sbjct: 230 ELSFGQVIHGWGIKLGYKDISHNSFENSLISLYSQCRDIQAAEILFKEMKYKDIVSWNAM 289

Query: 223 MGLFVDFEYAGDALKIFREMRKSRII-CDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           +      +   +A  +  EM+    +  D+V ++ +I + A L  L+ G+ +H   +   
Sbjct: 290 LDGLALNQRIWEAFDLLHEMQLLGCVQPDSVTVVIIIPLCAELMLLREGRAVHGLTLRRE 349

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           +  +  ++NS+I MYSKC D+  +                        NG +REA + F 
Sbjct: 350 MGLDFSVTNSLIDMYSKCKDVKRAE----------------------HNGHSREAQHLFR 387

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           ++ Q  +    S TL++IL +      L+    +H    + GF       N L+  Y  C
Sbjct: 388 QLLQSYSQCSLS-TLLAILPSCDSSEFLQFGESIHCWQLKLGFANNPLAVNSLMLMYINC 446

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV-PDSSTYLS 460
           G++   + + + +    D+V WNT++ G   NGH   AL  ++ M +  +V  DS    +
Sbjct: 447 GDLVACFSLLQTVSAAADIVCWNTVMAGCTQNGHFWEALKAFNLMRQDPDVCHDSVALFN 506

Query: 461 ILNACGH-----AGLTNDGLVIFNQMIEENKVK 488
           +++ACG+     AG +  GL +   M  + +V+
Sbjct: 507 VISACGNLELLFAGGSLHGLALKTLMESDIRVQ 539



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 110/513 (21%), Positives = 214/513 (41%), Gaps = 61/513 (11%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           ID Y+  K +     +G  +EA++LF ++                        ++++S  
Sbjct: 361 IDMYSKCKDVKRAEHNGHSREAQHLFRQL------------------------LQSYSQC 396

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-------LFEGLKNPYL 115
            LS       T++ +L +    + L+   SIH   +K G  ++       +   +    L
Sbjct: 397 SLS-------TLLAILPSCDSSEFLQFGESIHCWQLKLGFANNPLAVNSLMLMYINCGDL 449

Query: 116 VSC----------------NAIVAGFINNKLFQQAVLLFNFFR-GSGLVPNAVTMLTVIR 158
           V+C                N ++AG   N  F +A+  FN  R    +  ++V +  VI 
Sbjct: 450 VACFSLLQTVSAAADIVCWNTVMAGCTQNGHFWEALKAFNLMRQDPDVCHDSVALFNVIS 509

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C  L        +HGL +K  +  D+ V N+++ MY    +++ A  IF     +++ S
Sbjct: 510 ACGNLELLFAGGSLHGLALKTLMESDIRVQNALITMYGRCGEIENARIIFGFSCNRNLCS 569

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           W  M+  F   +    AL++F  +       + + ++ ++S    LG L+ GKQ+H  V+
Sbjct: 570 WNCMISAFSQNKDGRRALELFCHIEFEP---NEITIVGILSACTQLGVLRHGKQIHGHVI 626

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
              LQ    +S ++  MYS CG LD++  +F    E+S+ +W ++IS +  +    +A+ 
Sbjct: 627 RSRLQGNSFVSAALEDMYSNCGRLDTAFQIFQSSPERSVAAWNSMISAFGFHSNGGKAIE 686

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN-CLISS 397
            F +MR+  T    S T +S+L+A      +   L  +    E       +  + C++  
Sbjct: 687 LFHEMRECGTRPTKS-TFISLLSACSHSGLVNEGLWYYSNMLELFNVEADTEHHVCMVDM 745

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
             + G +  AY    +M    +   W  ++     +G  +    +   + E  E  +   
Sbjct: 746 LGRAGRLGEAYEFIRQMPTQPEPGVWGALLSACSYHGDLKMGREVAELLFEL-EPENVGY 804

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPS 490
           Y+S+ N    AG   D + +   + ++   KP+
Sbjct: 805 YISLSNMYVAAGRWKDAVELRRIIQDKGLKKPA 837


>gi|115475988|ref|NP_001061590.1| Os08g0340900 [Oryza sativa Japonica Group]
 gi|38423978|dbj|BAD01706.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|38637396|dbj|BAD03655.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|113623559|dbj|BAF23504.1| Os08g0340900 [Oryza sativa Japonica Group]
 gi|215686971|dbj|BAG90841.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 819

 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 160/575 (27%), Positives = 278/575 (48%), Gaps = 28/575 (4%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y  + L++ Y K G + EA  +F  +P +  V+W+ VI GY+  G    +++ F  M + 
Sbjct: 156 YVGTALINLYAKLGCMDEAMLVFHALPVRTPVTWNTVITGYAQIGCGGVALELFDRMGIE 215

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-------------------- 105
           G+ P+ F +   + A + L  LE  R IHG   +   E+D                    
Sbjct: 216 GVRPDRFVLASAVSACSALGFLEGGRQIHGYAYRSATETDTSVINVLIDLYCKCSRLSAA 275

Query: 106 --LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
             LF+ ++   LVS   +++G++ N    +A+ +F     +G  P+     +++  C +L
Sbjct: 276 RKLFDCMEYRNLVSWTTMISGYMQNSFNAEAITMFWNMTQAGWQPDGFACTSILNSCGSL 335

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
            +      IH   IK  L  D  V N+++DMY+    L  A  +F  +   D IS+  M+
Sbjct: 336 AAIWQGRQIHAHVIKADLEADEYVKNALIDMYAKCEHLTEARAVFDALAEDDAISYNAMI 395

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
             +       +A+ IF+ MR   +    +  ++L+ V++    ++  KQ+H  ++  G  
Sbjct: 396 EGYSKNRDLAEAVNIFQRMRFFSLRPSLLTFVSLLGVSSSQLAIELSKQIHGLIIKSGTS 455

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
            +L  ++++I +YSKC  ++ +++VFN +  K +V W ++I G+ QN    EA+  F ++
Sbjct: 456 LDLYAASALIDVYSKCSLVNDAKTVFNMLHYKDMVIWNSMIFGHAQNEQGEEAIKLFNQL 515

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
                 + +  T V+++T +  LA++    Q H    +AG      V N LI  Y+KCG 
Sbjct: 516 LLSGM-APNEFTFVALVTVASTLASMFHGQQFHAWIIKAGVDNDPHVSNALIDMYAKCGF 574

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           +    ++FE      DV+ WN++I  Y  +GH E AL ++  M E    P+  T++ +L+
Sbjct: 575 IKEGRMLFESTCG-EDVICWNSMITTYAQHGHAEEALQVFRLMGEAEVEPNYVTFVGVLS 633

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
           AC HAG   +GL  FN M     ++P  EHY  VV+L  R+G L  A     ++      
Sbjct: 634 ACAHAGFVGEGLNHFNSMKSNYDIEPGIEHYASVVNLFGRSGKLHAAKEFIERMPIKPAA 693

Query: 524 NIWRALLSGCVL----HVGRFQDAEALRSGSQKKG 554
            +WR+LLS C L     +GR+    AL +     G
Sbjct: 694 AVWRSLLSACHLFGNAEIGRYAAEMALLADPTDSG 728



 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 137/483 (28%), Positives = 251/483 (51%), Gaps = 25/483 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAF-SHM 62
           D + ++ LL  Y   G++++A +LFD +P +N+VSW  VI  Y+ +G  + ++  F +  
Sbjct: 52  DLFLTNLLLRGYSNLGRLRDARHLFDRMPHRNLVSWGSVISMYTQHGRDDCAISLFVAFQ 111

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPYL----- 115
             S  +PN F +  VL A    + + L   +HG+ VK  L+++++ G  L N Y      
Sbjct: 112 KASCEVPNEFLLASVLRACTQSKAVSLGEQVHGIAVKLDLDANVYVGTALINLYAKLGCM 171

Query: 116 ---------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                          V+ N ++ G+        A+ LF+     G+ P+   + + +  C
Sbjct: 172 DEAMLVFHALPVRTPVTWNTVITGYAQIGCGGVALELFDRMGIEGVRPDRFVLASAVSAC 231

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
            ALG       IHG   +     D SV N ++D+Y     L AA ++F  ME ++++SWT
Sbjct: 232 SALGFLEGGRQIHGYAYRSATETDTSVINVLIDLYCKCSRLSAARKLFDCMEYRNLVSWT 291

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+  ++   +  +A+ +F  M ++    D  A  ++++    L  + +G+Q+HA V+  
Sbjct: 292 TMISGYMQNSFNAEAITMFWNMTQAGWQPDGFACTSILNSCGSLAAIWQGRQIHAHVIKA 351

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
            L+++  + N++I MY+KC  L  +R+VF+ + E   +S+ A+I GY +N    EA+N F
Sbjct: 352 DLEADEYVKNALIDMYAKCEHLTEARAVFDALAEDDAISYNAMIEGYSKNRDLAEAVNIF 411

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            +MR         +T VS+L  S    A+E+  Q+HG+  ++G        + LI  YSK
Sbjct: 412 QRMRFFSLRP-SLLTFVSLLGVSSSQLAIELSKQIHGLIIKSGTSLDLYAASALIDVYSK 470

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           C  V+ A  VF  + + +D+V WN++I+G+  N  GE A+ L++++  +G  P+  T+++
Sbjct: 471 CSLVNDAKTVFNMLHY-KDMVIWNSMIFGHAQNEQGEEAIKLFNQLLLSGMAPNEFTFVA 529

Query: 461 ILN 463
           ++ 
Sbjct: 530 LVT 532



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 127/507 (25%), Positives = 232/507 (45%), Gaps = 33/507 (6%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+  Y K  ++  A  LFD +  +N+VSW+ +I GY  N F+ +++  F +M  +G  P+
Sbjct: 262 LIDLYCKCSRLSAARKLFDCMEYRNLVSWTTMISGYMQNSFNAEAITMFWNMTQAGWQPD 321

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFE 108
            F    +L +   L  +   R IH  ++K  LE+D                      +F+
Sbjct: 322 GFACTSILNSCGSLAAIWQGRQIHAHVIKADLEADEYVKNALIDMYAKCEHLTEARAVFD 381

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            L     +S NA++ G+  N+   +AV +F   R   L P+ +T ++++    +  +  L
Sbjct: 382 ALAEDDAISYNAMIEGYSKNRDLAEAVNIFQRMRFFSLRPSLLTFVSLLGVSSSQLAIEL 441

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
            + IHGL IK G  LD+   ++++D+YS    ++ A  +F  +  KD++ W  M+     
Sbjct: 442 SKQIHGLIIKSGTSLDLYAASALIDVYSKCSLVNDAKTVFNMLHYKDMVIWNSMIFGHAQ 501

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
            E   +A+K+F ++  S +  +    + L++V + L  +  G+Q HA ++  G+ ++  +
Sbjct: 502 NEQGEEAIKLFNQLLLSGMAPNEFTFVALVTVASTLASMFHGQQFHAWIIKAGVDNDPHV 561

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
           SN++I MY+KCG +   R +F     + ++ W ++I+ Y Q+G A EAL  F  M + + 
Sbjct: 562 SNALIDMYAKCGFIKEGRMLFESTCGEDVICWNSMITTYAQHGHAEEALQVFRLMGEAEV 621

Query: 349 DSVDSITLVSILTASGELAALEICLQ-----LHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
           +  + +T V +L+A      +   L            E G   Y SV N     + + G 
Sbjct: 622 EP-NYVTFVGVLSACAHAGFVGEGLNHFNSMKSNYDIEPGIEHYASVVNL----FGRSGK 676

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           +  A    E M        W +++    + G+ E       +M    +  DS  Y+ + N
Sbjct: 677 LHAAKEFIERMPIKPAAAVWRSLLSACHLFGNAEIG-RYAAEMALLADPTDSGPYVLLSN 735

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPS 490
                GL  D   +  QM     VK +
Sbjct: 736 IYASKGLWADVHNLRQQMDSSGTVKET 762



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 83/347 (23%), Positives = 160/347 (46%), Gaps = 24/347 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + L+  Y K   + EA  +FD + E + +S++ +I GYS N    +++  F  M 
Sbjct: 356 DEYVKNALIDMYAKCEHLTEARAVFDALAEDDAISYNAMIEGYSKNRDLAEAVNIFQRMR 415

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------- 106
              L P+  T V +L  ++    +EL++ IHGL++K G   DL                 
Sbjct: 416 FFSLRPSLLTFVSLLGVSSSQLAIELSKQIHGLIIKSGTSLDLYAASALIDVYSKCSLVN 475

Query: 107 -----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                F  L    +V  N+++ G   N+  ++A+ LFN    SG+ PN  T + ++    
Sbjct: 476 DAKTVFNMLHYKDMVIWNSMIFGHAQNEQGEEAIKLFNQLLLSGMAPNEFTFVALVTVAS 535

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            L S    +  H   IK G+  D  V+N+++DMY+    +     +F     +DVI W  
Sbjct: 536 TLASMFHGQQFHAWIIKAGVDNDPHVSNALIDMYAKCGFIKEGRMLFESTCGEDVICWNS 595

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG-KQLHAQVVLG 280
           M+  +    +A +AL++FR M ++ +  + V  + ++S  A  G +  G    ++     
Sbjct: 596 MITTYAQHGHAEEALQVFRLMGEAEVEPNYVTFVGVLSACAHAGFVGEGLNHFNSMKSNY 655

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVS-WTAIISG 326
            ++  +    S++ ++ + G L +++    ++  K   + W +++S 
Sbjct: 656 DIEPGIEHYASVVNLFGRSGKLHAAKEFIERMPIKPAAAVWRSLLSA 702



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 86/287 (29%), Positives = 141/287 (49%), Gaps = 14/287 (4%)

Query: 265 GD-LKR-GKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTA 322
           GD L+R    +HA+  + G   +L L+N ++  YS  G L  +R +F+++  ++LVSW +
Sbjct: 30  GDRLRRLNPAIHARATVAGRLDDLFLTNLLLRGYSNLGRLRDARHLFDRMPHRNLVSWGS 89

Query: 323 IISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEA 382
           +IS Y Q+G    A++ F+  ++   +  +   L S+L A  +  A+ +  Q+HGIA + 
Sbjct: 90  VISMYTQHGRDDCAISLFVAFQKASCEVPNEFLLASVLRACTQSKAVSLGEQVHGIAVKL 149

Query: 383 GFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALAL 442
                  V   LI+ Y+K G +D A +VF  +  +R  V+WNT+I GY   G G  AL L
Sbjct: 150 DLDANVYVGTALINLYAKLGCMDEAMLVFHALP-VRTPVTWNTVITGYAQIGCGGVALEL 208

Query: 443 YHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLA 502
           + +M   G  PD     S ++AC   G    G     + I     + + E    V+++L 
Sbjct: 209 FDRMGIEGVRPDRFVLASAVSACSALGFLEGG-----RQIHGYAYRSATETDTSVINVLI 263

Query: 503 RAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQ---DAEAL 546
              C       A KL + M    +R L+S   +  G  Q   +AEA+
Sbjct: 264 DLYCKCSRLSAARKLFDCME---YRNLVSWTTMISGYMQNSFNAEAI 307



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 92/184 (50%), Gaps = 22/184 (11%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D Y +S L+  Y K   + +A+ +F+ +  K++V W+ +I G++ N   E+++K F+ +
Sbjct: 456 LDLYAASALIDVYSKCSLVNDAKTVFNMLHYKDMVIWNSMIFGHAQNEQGEEAIKLFNQL 515

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
           +LSG+ PN FT V ++  A+ L ++   +  H  ++K G+++D                 
Sbjct: 516 LLSGMAPNEFTFVALVTVASTLASMFHGQQFHAWIIKAGVDNDPHVSNALIDMYAKCGFI 575

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                LFE      ++  N+++  +  +   ++A+ +F     + + PN VT + V+  C
Sbjct: 576 KEGRMLFESTCGEDVICWNSMITTYAQHGHAEEALQVFRLMGEAEVEPNYVTFVGVLSAC 635

Query: 161 VALG 164
              G
Sbjct: 636 AHAG 639


>gi|357487403|ref|XP_003613989.1| hypothetical protein MTR_5g043450 [Medicago truncatula]
 gi|355515324|gb|AES96947.1| hypothetical protein MTR_5g043450 [Medicago truncatula]
          Length = 828

 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 157/568 (27%), Positives = 300/568 (52%), Gaps = 27/568 (4%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C D    + L+  Y +   +++A+ +FDE+  +++V WS +I  Y  NG + + ++ F  
Sbjct: 134 CEDRVIGTSLVGMYGELCFLRDAKKVFDEMCVRDLVLWSSIISCYVENGVYREGLEMFRS 193

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------- 105
           M+  G+ P+S  ++ V  A   +  L LA+S+HG +++ G+  D                
Sbjct: 194 MICEGIRPDSVMLLSVAEACGKIGCLRLAKSVHGYVMREGMVGDGSLSNSLIVMYSQCGY 253

Query: 106 ------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                 LFE + +       ++++ +  N+ F++A+ +F   + S + PN VTM++V+  
Sbjct: 254 LCRAKRLFECIDDRSTSCWTSMISAYNQNECFEEALDVFIKMQDSEVEPNDVTMISVLNS 313

Query: 160 CVALGSRALCELIHGLTIKLGL-ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
           C  LG     + +H   ++  + +  + +  +++D YS    + +  ++   +  ++++S
Sbjct: 314 CARLGRLKEGKSVHCFVLRNAMGVTGLDLGPALIDFYSACWKMSSCEKLLHSIGNENIVS 373

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           W  ++  +       +A+  F  M    I+ D+ +L + IS +A  G ++ G+Q+H  V+
Sbjct: 374 WNTLISFYAREGLNDEAMAFFACMVAKGIMPDSFSLASSISASASSGSIQFGQQIHGHVM 433

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
             G   E  + NS++ MYSKCG   S+ ++FN+I  KS+V+W  +I G+ QNG + EAL+
Sbjct: 434 KRGFFDEF-VQNSLMDMYSKCGFASSAYTIFNKIKHKSIVAWNCMICGFSQNGISVEALS 492

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
            F +M + + + ++ +T +S + A   L  L+    +H      G      +   L+  Y
Sbjct: 493 LFDEMFKNRLE-INKVTFLSAIQACSNLGYLDKGKWIHHKIIVTGNQNDLYIDTALVDMY 551

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
           +KCG++  A  VF+ +   + VVSW+T+I  +G++G    A +L+HKM  +   P+  T+
Sbjct: 552 AKCGDLQTAQKVFDSI-VEKSVVSWSTMIAAHGIHGQINAATSLFHKMVLSNIKPNEVTF 610

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
           ++IL+AC HAG   +G   FN M +   + P+ EH+  +VDLL+RAG ++ A  +   + 
Sbjct: 611 MNILSACRHAGSVKEGKFYFNTMRDYYGIVPNVEHFASIVDLLSRAGDINGAYEIIKSIR 670

Query: 519 EGMGPNIWRALLSGCVLHVGRFQDAEAL 546
             +  +IW ALL+GC ++ GR    E +
Sbjct: 671 TPVAASIWGALLNGCRIY-GRMDMIEYI 697



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 103/331 (31%), Positives = 167/331 (50%), Gaps = 6/331 (1%)

Query: 128 NKLFQQAVLLFNFF--RGSGLVPN-AVTMLTVIRGCVALGSRALCELIHGLTIKLGLILD 184
           N LF++ + LFN     GS L  N A    +VIR    +G   +   +HG  +K G   D
Sbjct: 77  NHLFREVLSLFNHHIQMGSKLTQNCAFLYPSVIRAVTGVGELIVGRKLHGRILKSGFCED 136

Query: 185 VSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRK 244
             +  S++ MY  L  L  A ++F EM  +D++ W+ ++  +V+     + L++FR M  
Sbjct: 137 RVIGTSLVGMYGELCFLRDAKKVFDEMCVRDLVLWSSIISCYVENGVYREGLEMFRSMIC 196

Query: 245 SRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDS 304
             I  D+V LL++      +G L+  K +H  V+  G+  +  LSNS+I MYS+CG L  
Sbjct: 197 EGIRPDSVMLLSVAEACGKIGCLRLAKSVHGYVMREGMVGDGSLSNSLIVMYSQCGYLCR 256

Query: 305 SRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASG 364
           ++ +F  I ++S   WT++IS Y QN C  EAL+ FIKM+  + +  D +T++S+L +  
Sbjct: 257 AKRLFECIDDRSTSCWTSMISAYNQNECFEEALDVFIKMQDSEVEPND-VTMISVLNSCA 315

Query: 365 ELAALEICLQLHGIAFEAGFPRY-RSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSW 423
            L  L+    +H              +   LI  YS C  +     +   +G   ++VSW
Sbjct: 316 RLGRLKEGKSVHCFVLRNAMGVTGLDLGPALIDFYSACWKMSSCEKLLHSIGN-ENIVSW 374

Query: 424 NTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           NT+I  Y   G  + A+A +  M   G +PD
Sbjct: 375 NTLISFYAREGLNDEAMAFFACMVAKGIMPD 405



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 99/206 (48%), Gaps = 5/206 (2%)

Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISG 326
           L+R  QLHA +V+  L +    S  ++  YS+ G L SSR VF          ++ +I  
Sbjct: 14  LRRLTQLHAHLVVTSLHNNPLASTKLLESYSQMGSLQSSRLVFYTHPSPDSFMFSVLIKC 73

Query: 327 YVQNGCAREAL---NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG 383
           ++ N   RE L   N  I+M  + T +  +    S++ A   +  L +  +LHG   ++G
Sbjct: 74  HLWNHLFREVLSLFNHHIQMGSKLTQNC-AFLYPSVIRAVTGVGELIVGRKLHGRILKSG 132

Query: 384 FPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALY 443
           F   R +   L+  Y +   +  A  VF+EM  +RD+V W++II  Y  NG     L ++
Sbjct: 133 FCEDRVIGTSLVGMYGELCFLRDAKKVFDEMC-VRDLVLWSSIISCYVENGVYREGLEMF 191

Query: 444 HKMTETGEVPDSSTYLSILNACGHAG 469
             M   G  PDS   LS+  ACG  G
Sbjct: 192 RSMICEGIRPDSVMLLSVAEACGKIG 217


>gi|225441775|ref|XP_002277828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Vitis vinifera]
          Length = 773

 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 169/555 (30%), Positives = 282/555 (50%), Gaps = 25/555 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L++ Y K  K+ +A+++FDE+  +N ++W+ +I G+      E   +    M 
Sbjct: 112 DAFRGNNLVNLYGKFNKLGDAQSVFDEMLVRNTITWTTLIKGHLQVNDVESVFRIAREMY 171

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPYL------ 115
             G   N  T   +L A   L+NL     IHG ++K G + D+F G  L + Y       
Sbjct: 172 WVGEEFNEHTCSVILQACDSLENLVRGEQIHGFVIKRGFDEDVFVGTSLISMYSRCGDLG 231

Query: 116 -------------VSC-NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                        V C N +++ +      ++A+ +F    GSGL PN  T   VI  C 
Sbjct: 232 AAEKVYSNLAYKDVRCLNFMISEYGKAGCGEKAIGVFLHLLGSGLEPNDYTFTNVISACN 291

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
                 +  ++HG+ IK G   ++SV N+++ +Y     L+ A + F  M  ++++SWT 
Sbjct: 292 GDIDVEVLRVLHGMCIKCGCGDEISVGNAIVSVYVKHGMLEEAEKSFCGMGERNLVSWTA 351

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++  +V       AL+ F ++ +  +  D+     L+   +   +L  G Q+H  VV  G
Sbjct: 352 LLSGYVKNGNGKKALEGFSQILELGVGFDSCCFATLLDGCSECKNLGLGLQIHGFVVKLG 411

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
              ++ +  ++I +Y+KC  L S+R VF+ + +K++VS+ AI+SGY+      +A+  F 
Sbjct: 412 YVHDVSVGTALIDLYAKCRKLRSARLVFHSLLDKNIVSFNAILSGYI-GADEEDAMALFS 470

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           ++R       DS+T   +L+ S + A L     LH    + GF    SV N +I+ Y+KC
Sbjct: 471 QLRLADIKP-DSVTFARLLSLSADQACLVKGKCLHAYIIKTGFEANPSVGNAVITMYAKC 529

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G++  A  +F  M +L D +SWN +I  Y ++G G  AL L+ +M +   VPD  T LS+
Sbjct: 530 GSIGDACQLFYSMNYL-DSISWNAVISAYALHGQGRKALILFEEMKKEEFVPDEITILSV 588

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L AC ++GL  +G  +FN M  +  +KP  EH+ C+VDLL RAG LS+A     +     
Sbjct: 589 LQACSYSGLLEEGFCLFNDMESKYGIKPEIEHFACMVDLLGRAGYLSEAMSFINRSPFSG 648

Query: 522 GPNIWRALLSGCVLH 536
            P +WR L+  C LH
Sbjct: 649 SPLLWRTLVHVCKLH 663



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 88/322 (27%), Positives = 155/322 (48%), Gaps = 7/322 (2%)

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
           +  G   L + IH    KLG   D    N+++++Y     L  A  +F EM  ++ I+WT
Sbjct: 89  IGSGDLMLGQAIHAFLAKLGYQNDAFRGNNLVNLYGKFNKLGDAQSVFDEMLVRNTITWT 148

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++   +         +I REM       +      ++     L +L RG+Q+H  V+  
Sbjct: 149 TLIKGHLQVNDVESVFRIAREMYWVGEEFNEHTCSVILQACDSLENLVRGEQIHGFVIKR 208

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           G   ++ +  S+I+MYS+CGDL ++  V++ +  K +     +IS Y + GC  +A+  F
Sbjct: 209 GFDEDVFVGTSLISMYSRCGDLGAAEKVYSNLAYKDVRCLNFMISEYGKAGCGEKAIGVF 268

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
           + +     +  D  T  ++++A      +E+   LHG+  + G     SV N ++S Y K
Sbjct: 269 LHLLGSGLEPND-YTFTNVISACNGDIDVEVLRVLHGMCIKCGCGDEISVGNAIVSVYVK 327

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
            G ++ A   F  MG  R++VSW  ++ GY  NG+G+ AL  + ++ E G   DS  + +
Sbjct: 328 HGMLEEAEKSFCGMG-ERNLVSWTALLSGYVKNGNGKKALEGFSQILELGVGFDSCCFAT 386

Query: 461 ILNACGHA-----GLTNDGLVI 477
           +L+ C        GL   G V+
Sbjct: 387 LLDGCSECKNLGLGLQIHGFVV 408



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 136/281 (48%), Gaps = 10/281 (3%)

Query: 257 LISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKS 316
           L+ ++   GDL  G+ +HA +   G Q++    N+++ +Y K   L  ++SVF+++  ++
Sbjct: 84  LLQISIGSGDLMLGQAIHAFLAKLGYQNDAFRGNNLVNLYGKFNKLGDAQSVFDEMLVRN 143

Query: 317 LVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLH 376
            ++WT +I G++Q     E++ +  +      +  +  T   IL A   L  L    Q+H
Sbjct: 144 TITWTTLIKGHLQVNDV-ESVFRIAREMYWVGEEFNEHTCSVILQACDSLENLVRGEQIH 202

Query: 377 GIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHG 436
           G   + GF     V   LIS YS+CG++  A  V+  + + +DV   N +I  YG  G G
Sbjct: 203 GFVIKRGFDEDVFVGTSLISMYSRCGDLGAAEKVYSNLAY-KDVRCLNFMISEYGKAGCG 261

Query: 437 ETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGC 496
           E A+ ++  +  +G  P+  T+ ++++AC +  +  + L + + M  +            
Sbjct: 262 EKAIGVFLHLLGSGLEPNDYTFTNVISAC-NGDIDVEVLRVLHGMCIKCGCGDEISVGNA 320

Query: 497 VVDLLARAGCLSDASGLAGKLLEGMGPN---IWRALLSGCV 534
           +V +  + G L +A     K   GMG      W ALLSG V
Sbjct: 321 IVSVYVKHGMLEEAE----KSFCGMGERNLVSWTALLSGYV 357


>gi|357147965|ref|XP_003574566.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 923

 Score =  249 bits (636), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 166/546 (30%), Positives = 277/546 (50%), Gaps = 34/546 (6%)

Query: 19  GKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVL 78
           G++ +AE LF  + E++ VSW+ ++  YS  G   KS + FS M   GLL +  T +  L
Sbjct: 194 GRVHDAEKLFYRMEERDTVSWNALVSMYSHEGLCSKSFRVFSDMRRGGLLRHDATTLCSL 253

Query: 79  VAA-AGLQNLELARSIHGLMVKFGLESD----------------------LFEGLKNPYL 115
           ++  A    +     +H L ++ GL S                       LF  +    L
Sbjct: 254 ISVCASSDYVSYGSGVHSLCLRTGLHSYIPVVNALVNMYSSAGKLADAEFLFWNMSRRDL 313

Query: 116 VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGL 175
           +S N +++ ++ N     A+        +   P+ +T  + +  C + G+     ++H +
Sbjct: 314 ISWNTMISSYVQNGNNMDALKTLGQLLHTNEGPDRMTFSSALGACSSPGALMDGRMVHAM 373

Query: 176 TIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDA 235
           T++L L  ++ V NS++ MY     ++ A +IF+ M   DV+S   ++G +   E    A
Sbjct: 374 TLQLSLHHNLLVGNSLITMYGKCNSIEDAERIFQLMPNHDVVSCNILIGSYAVLEDGTKA 433

Query: 236 LKIFREMRKSRIICDTVALLNLISVNAILGDLKR-GKQLHAQVVLGGLQSELRLSNSIIA 294
           +++F  MR+  +  + + ++N++       DL+  G  LHA  +  G  S+  +SNS+I 
Sbjct: 434 MQVFFWMRRGEVKLNYITIVNILGSFTSSNDLRNYGLPLHAYTIHAGFLSDDYVSNSLIT 493

Query: 295 MYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSI 354
           MY+KCGDL+SS +VF +I  +S+VSW A+I+  VQ+G   E+L  F+ MR +  + +D I
Sbjct: 494 MYAKCGDLESSNNVFQRIINRSVVSWNAMIAANVQHGHGEESLKLFMDMRHDG-NGLDHI 552

Query: 355 TLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM 414
            L   +++S  LA+LE  +QLHG+  + G      V N  +  Y KCG +D    +  + 
Sbjct: 553 CLAECMSSSASLASLEEGMQLHGLGLKCGLGNDSHVVNAAMDMYGKCGKMDEMLKMLPDP 612

Query: 415 GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDG 474
             +R    WNT+I GY   G+ + A   +  M   G  PD  T++++L+AC HAGL + G
Sbjct: 613 A-IRPQQCWNTLISGYARYGYFKEAEETFKHMISVGRTPDYVTFVTLLSACSHAGLVDKG 671

Query: 475 LVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMG--PN--IWRALL 530
           +  +N M     V P  +H  C+VD+L R G  ++A     K +E M   PN  IWR+LL
Sbjct: 672 IDYYNSMSSVFGVSPGIKHCVCIVDILGRLGRFAEAE----KFIEDMPVLPNDLIWRSLL 727

Query: 531 SGCVLH 536
           S    H
Sbjct: 728 SSSRTH 733



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 134/474 (28%), Positives = 228/474 (48%), Gaps = 30/474 (6%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           ++ Y  + LL  Y     + +A+ LF E+PE+NVVSW+ ++   S NG  E+++  +  M
Sbjct: 77  VNVYIGTALLHLYGSQKHVLDAQRLFWEMPERNVVSWTALMVALSSNGHLEEALGYYRRM 136

Query: 63  MLSGLL--PNSFTMVGVLVAA-----AGLQ------------NLELARSIHGLMVKFGLE 103
               +    N+F  V  L  +     AGLQ             + +A S+  ++   G  
Sbjct: 137 RRERIACNANAFATVVSLCGSLEDEVAGLQVFSHVIVSGLQRQVSVANSLISMLGNLGRV 196

Query: 104 SD---LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLV-PNAVTMLTVIRG 159
            D   LF  ++    VS NA+V+ + +  L  ++  +F+  R  GL+  +A T+ ++I  
Sbjct: 197 HDAEKLFYRMEERDTVSWNALVSMYSHEGLCSKSFRVFSDMRRGGLLRHDATTLCSLISV 256

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C +    +    +H L ++ GL   + V N++++MYS    L  A  +F  M  +D+ISW
Sbjct: 257 CASSDYVSYGSGVHSLCLRTGLHSYIPVVNALVNMYSSAGKLADAEFLFWNMSRRDLISW 316

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
             M+  +V      DALK   ++  +    D +   + +   +  G L  G+ +HA  + 
Sbjct: 317 NTMISSYVQNGNNMDALKTLGQLLHTNEGPDRMTFSSALGACSSPGALMDGRMVHAMTLQ 376

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
             L   L + NS+I MY KC  ++ +  +F  +    +VS   +I  Y       +A+  
Sbjct: 377 LSLHHNLLVGNSLITMYGKCNSIEDAERIFQLMPNHDVVSCNILIGSYAVLEDGTKAMQV 436

Query: 340 FIKMRQEKTDSVDSITLVSIL---TASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
           F  MR+ +   ++ IT+V+IL   T+S +L      L LH     AGF     V N LI+
Sbjct: 437 FFWMRRGEV-KLNYITIVNILGSFTSSNDLR--NYGLPLHAYTIHAGFLSDDYVSNSLIT 493

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
            Y+KCG+++ +  VF+ +   R VVSWN +I     +GHGE +L L+  M   G
Sbjct: 494 MYAKCGDLESSNNVFQRI-INRSVVSWNAMIAANVQHGHGEESLKLFMDMRHDG 546



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 101/350 (28%), Positives = 173/350 (49%), Gaps = 5/350 (1%)

Query: 138 FNFFRG---SGLVPNAVTMLTVIRGCVALGS-RALCELIHGLTIKLGLILDVSVNNSVLD 193
           F+  RG    G+  +   + +++  C      RA    IH LT K GL+++V +  ++L 
Sbjct: 28  FSMLRGMRERGVPLSGFALASLVTACERWEEGRACGAAIHALTQKAGLMVNVYIGTALLH 87

Query: 194 MYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVA 253
           +Y     +  A ++F EM  ++V+SWT +M       +  +AL  +R MR+ RI C+  A
Sbjct: 88  LYGSQKHVLDAQRLFWEMPERNVVSWTALMVALSSNGHLEEALGYYRRMRRERIACNANA 147

Query: 254 LLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT 313
              ++S+   L D   G Q+ + V++ GLQ ++ ++NS+I+M    G +  +  +F ++ 
Sbjct: 148 FATVVSLCGSLEDEVAGLQVFSHVIVSGLQRQVSVANSLISMLGNLGRVHDAEKLFYRME 207

Query: 314 EKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICL 373
           E+  VSW A++S Y   G   ++   F  MR+      D+ TL S+++       +    
Sbjct: 208 ERDTVSWNALVSMYSHEGLCSKSFRVFSDMRRGGLLRHDATTLCSLISVCASSDYVSYGS 267

Query: 374 QLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVN 433
            +H +    G   Y  V N L++ YS  G +  A  +F  M   RD++SWNT+I  Y  N
Sbjct: 268 GVHSLCLRTGLHSYIPVVNALVNMYSSAGKLADAEFLFWNMS-RRDLISWNTMISSYVQN 326

Query: 434 GHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIE 483
           G+   AL    ++  T E PD  T+ S L AC   G   DG ++    ++
Sbjct: 327 GNNMDALKTLGQLLHTNEGPDRMTFSSALGACSSPGALMDGRMVHAMTLQ 376



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 104/452 (23%), Positives = 200/452 (44%), Gaps = 47/452 (10%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L++ Y  +GK+ +AE LF  +  ++++SW+ +I  Y  NG +  ++K    ++ +   P+
Sbjct: 288 LVNMYSSAGKLADAEFLFWNMSRRDLISWNTMISSYVQNGNNMDALKTLGQLLHTNEGPD 347

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------------FE 108
             T    L A +    L   R +H + ++  L  +L                      F+
Sbjct: 348 RMTFSSALGACSSPGALMDGRMVHAMTLQLSLHHNLLVGNSLITMYGKCNSIEDAERIFQ 407

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS-RA 167
            + N  +VSCN ++  +   +   +A+ +F + R   +  N +T++ ++    +    R 
Sbjct: 408 LMPNHDVVSCNILIGSYAVLEDGTKAMQVFFWMRRGEVKLNYITIVNILGSFTSSNDLRN 467

Query: 168 LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
               +H  TI  G + D  V+NS++ MY+   DL+++  +F+ +  + V+SW  M+   V
Sbjct: 468 YGLPLHAYTIHAGFLSDDYVSNSLITMYAKCGDLESSNNVFQRIINRSVVSWNAMIAANV 527

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
              +  ++LK+F +MR      D + L   +S +A L  L+ G QLH   +  GL ++  
Sbjct: 528 QHGHGEESLKLFMDMRHDGNGLDHICLAECMSSSASLASLEEGMQLHGLGLKCGLGNDSH 587

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
           + N+ + MY KCG +D    +      +    W  +ISGY + G  +EA   F  M    
Sbjct: 588 VVNAAMDMYGKCGKMDEMLKMLPDPAIRPQQCWNTLISGYARYGYFKEAEETFKHMISVG 647

Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN------------CLI 395
             + D +T V++L+A             H    + G   Y S+ +            C++
Sbjct: 648 R-TPDYVTFVTLLSACS-----------HAGLVDKGIDYYNSMSSVFGVSPGIKHCVCIV 695

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
               + G    A    E+M  L + + W +++
Sbjct: 696 DILGRLGRFAEAEKFIEDMPVLPNDLIWRSLL 727


>gi|357118484|ref|XP_003560984.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial-like [Brachypodium distachyon]
          Length = 678

 Score =  249 bits (636), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 166/611 (27%), Positives = 299/611 (48%), Gaps = 60/611 (9%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           +KLLS Y   G +  A  + DE P  +  ++ + +  ++  G H +++     M      
Sbjct: 64  TKLLSCYAALGDLASARRVLDETPHPDAYTYKVALGWHAAAGRHAEAVAVHRDMRRRCPA 123

Query: 69  PNSFTMVGVLVAAAGLQNLELA--RSIHGLMVKFG---------------------LESD 105
                +V  L   A +++ +    R +H  +VK G                         
Sbjct: 124 EQEDVVVLSLALKAAVRSADFGYGRRLHCDVVKAGGGDLFVMNNLVDMYAKGGDLKNARK 183

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F+ + +  +VS  ++++G + N L ++ ++LFN  R   ++P+  TM +V+  C  LGS
Sbjct: 184 VFDRIPDRNVVSWTSMLSGCLQNGLAKEGLVLFNEMRQESILPSEYTMASVLMACTMLGS 243

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
                LIHG  +K GL+ +  +  ++LDMY    + + A Q+F E+   D++ WT M+  
Sbjct: 244 LHQGRLIHGSVMKHGLVSNHFITAAMLDMYVKCGEAEDARQVFDELSFVDLVLWTTMIVG 303

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA-QVVLGGLQS 284
           +       DAL +F + +  RI+ ++V +  ++S +A L +L  G+ +H   V LG +++
Sbjct: 304 YTQNGSPLDALLLFVDDKFMRIVPNSVTIATVLSASAQLRNLSLGRSIHGISVKLGAVEN 363

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           ++ + N+++ MY+KC  L  ++ +F ++  K +V+W ++I+GY +N    +AL  F  MR
Sbjct: 364 DVVM-NALVDMYAKCKALSDAKGIFGRVLNKDVVTWNSLIAGYAENDMGSDALMLFSHMR 422

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
            + +   D+I++V+ L+A   L  L I    H  A +  F     V   L++ Y+KC ++
Sbjct: 423 VQGSLP-DAISVVNALSACVCLGDLLIGKCFHTYAVKHAFMSNIYVNTALLNLYNKCADL 481

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
             A  VF EM   R+ V+W  +I GYG+ G    ++ L+++M +    P+ + + SIL+ 
Sbjct: 482 PSAQRVFSEMND-RNTVTWGAMIGGYGMQGDSAGSIDLFNEMLKDNIQPNEAVFTSILST 540

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C H G+   G   F  M     + PS +HY C+VD+LARAG L +A     K+      +
Sbjct: 541 CSHTGMVTVGKKCFESMAHYFNITPSMKHYACMVDVLARAGNLEEALEFIQKMPMQADTS 600

Query: 525 IWRALLSGCVLH---------------------------------VGRFQDAEALRSGSQ 551
           IW+A L GC LH                                  GR+  + A+R   +
Sbjct: 601 IWQAFLHGCKLHSRLEFAEEAVNRMMVLHPDTPDFCVMMSNLYTSYGRWDKSLAIRKLMK 660

Query: 552 KKGIIKIPGIS 562
           ++G++K+PG S
Sbjct: 661 ERGLVKLPGCS 671



 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 139/512 (27%), Positives = 250/512 (48%), Gaps = 33/512 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L+  Y K G +K A  +FD IP++NVVSW+ ++ G   NG  ++ +  F+ M 
Sbjct: 161 DLFVMNNLVDMYAKGGDLKNARKVFDRIPDRNVVSWTSMLSGCLQNGLAKEGLVLFNEMR 220

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
              +LP+ +TM  VL+A   L +L   R IHG ++K GL S+                  
Sbjct: 221 QESILPSEYTMASVLMACTMLGSLHQGRLIHGSVMKHGLVSNHFITAAMLDMYVKCGEAE 280

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +F+ L    LV    ++ G+  N     A+LLF   +   +VPN+VT+ TV+    
Sbjct: 281 DARQVFDELSFVDLVLWTTMIVGYTQNGSPLDALLLFVDDKFMRIVPNSVTIATVLSASA 340

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            L + +L   IHG+++KLG + +  V N+++DMY+    L  A  IF  +  KDV++W  
Sbjct: 341 QLRNLSLGRSIHGISVKLGAVENDVVMNALVDMYAKCKALSDAKGIFGRVLNKDVVTWNS 400

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++  + + +   DAL +F  MR    + D ++++N +S    LGDL  GK  H   V   
Sbjct: 401 LIAGYAENDMGSDALMLFSHMRVQGSLPDAISVVNALSACVCLGDLLIGKCFHTYAVKHA 460

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
             S + ++ +++ +Y+KC DL S++ VF+++ +++ V+W A+I GY   G +  +++ F 
Sbjct: 461 FMSNIYVNTALLNLYNKCADLPSAQRVFSEMNDRNTVTWGAMIGGYGMQGDSAGSIDLFN 520

Query: 342 KMRQEKTDSVDSI--TLVSILTASGELAALEICLQ--LHGIAFEAGFPRYRSVQNCLISS 397
           +M ++     +++  +++S  + +G +   + C +   H          Y     C++  
Sbjct: 521 EMLKDNIQPNEAVFTSILSTCSHTGMVTVGKKCFESMAHYFNITPSMKHYA----CMVDV 576

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETA-LALYHKMTETGEVPDSS 456
            ++ GN++ A    ++M    D   W   ++G  ++   E A  A+   M    + PD  
Sbjct: 577 LARAGNLEEALEFIQKMPMQADTSIWQAFLHGCKLHSRLEFAEEAVNRMMVLHPDTPDFC 636

Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVK 488
             +S  N     G  +  L I   M E   VK
Sbjct: 637 VMMS--NLYTSYGRWDKSLAIRKLMKERGLVK 666



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 112/243 (46%), Gaps = 8/243 (3%)

Query: 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
           + LHA+++  GL   LR    +++ Y+  GDL S+R V ++       ++   +  +   
Sbjct: 45  RALHARLLAHGLLRGLRAHTKLLSCYAALGDLASARRVLDETPHPDAYTYKVALGWHAAA 104

Query: 331 GCAREALNQFIKMRQE-KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS 389
           G   EA+     MR+    +  D + L   L A+   A      +LH    +AG      
Sbjct: 105 GRHAEAVAVHRDMRRRCPAEQEDVVVLSLALKAAVRSADFGYGRRLHCDVVKAGGGDL-F 163

Query: 390 VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
           V N L+  Y+K G++  A  VF+ +   R+VVSW +++ G   NG  +  L L+++M + 
Sbjct: 164 VMNNLVDMYAKGGDLKNARKVFDRIPD-RNVVSWTSMLSGCLQNGLAKEGLVLFNEMRQE 222

Query: 450 GEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY--GCVVDLLARAGCL 507
             +P   T  S+L AC   G  + G +I   +++   V     H+    ++D+  + G  
Sbjct: 223 SILPSEYTMASVLMACTMLGSLHQGRLIHGSVMKHGLV---SNHFITAAMLDMYVKCGEA 279

Query: 508 SDA 510
            DA
Sbjct: 280 EDA 282


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  249 bits (636), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 182/675 (26%), Positives = 311/675 (46%), Gaps = 125/675 (18%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           ++++Y   G   +A ++ + +     V W++++  +   G  ++++     M+ +G  P+
Sbjct: 89  VVASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAGTKPD 148

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF----------------------- 107
            FT+   L A   L +     + HGL+   G ES++F                       
Sbjct: 149 HFTLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLVFD 208

Query: 108 ----EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFF------RGSGLVPNAVTMLTVI 157
               +G+ +  ++S N+IVA  +     + A+ LF+        + +    + ++++ ++
Sbjct: 209 EITRKGIDD--VISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNIL 266

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
             C +L +    + IH   I+ G   D  V N+++D Y+    +  A+ +F  ME KDV+
Sbjct: 267 PACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVV 326

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICD--------------------------- 250
           SW  M+  +      G A ++F+ MRK  I  D                           
Sbjct: 327 SWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQM 386

Query: 251 --------TVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS------------ELRLSN 290
                   +V +++L+S  A LG L +G + HA  +   L S            +L + N
Sbjct: 387 ILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHN 446

Query: 291 SIIAMYSKCGDLDSSRSVFNQIT--EKSLVSWTAIISGYVQNGCAREALNQFIKM-RQEK 347
           ++I MYSKC    ++R++FN I   E+++V+WT +I GY Q G + +AL  F +M  +  
Sbjct: 447 ALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPY 506

Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS----VQNCLISSYSKCGN 403
             + ++ T+  IL A   L++L +  Q+H  A+      Y S    V NCLI  YSKCG+
Sbjct: 507 AVAPNAYTISCILMACAHLSSLRMGKQIH--AYVTRHHEYESSVYFVANCLIDMYSKCGD 564

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           VD A  VF+ M   R+ VSW +++ GYG++G G+ AL ++ KM + G VPD  ++L +L 
Sbjct: 565 VDTARNVFDSMP-KRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLY 623

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
           AC H+G+ + GL  F+ M  +  V  S +HY CV+DLLAR+G L  A     ++      
Sbjct: 624 ACSHSGMVDQGLDYFDIMRSDYGVIASAQHYACVIDLLARSGRLDKAWKTIQEMPMEPSA 683

Query: 524 NIWRALLSGCVLH---------------------------------VGRFQDAEALRSGS 550
            IW ALLS C +H                                   R++D   +R   
Sbjct: 684 AIWVALLSACRVHSNVELAEYALNKLVSMKAENDGSYTLISNIYATARRWKDVARIRQLM 743

Query: 551 QKKGIIKIPGISFLN 565
           +K GI K PG S++ 
Sbjct: 744 KKSGIKKRPGCSWVQ 758


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  249 bits (636), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 162/552 (29%), Positives = 284/552 (51%), Gaps = 28/552 (5%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM-LSGL 67
           +KL   +F  G +     LF+++ + ++  ++++I G+S NG  + S+  ++H+   + L
Sbjct: 50  TKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNL 109

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG------------------ 109
            P++FT    + AA+ L++  +   +H   +  G+ S+LF G                  
Sbjct: 110 RPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARK 169

Query: 110 ----LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
               +     V  N +++GF  N  F+ ++ +F      GL  ++ T+ TV+     L  
Sbjct: 170 VFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQE 229

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYS-CLMDLDAAIQIFREMECKDVISWTRMMG 224
             L   I  L  K GL  DV V   ++ +YS C       I +F +++  D+IS+  M+ 
Sbjct: 230 YRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRI-LFDQIDQPDLISYNAMIS 288

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            +        A+ +FRE+  S    ++  L+ LI V      L+  + +    +  G+  
Sbjct: 289 GYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIIL 348

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           +  +S ++  +Y +  ++  +R +F++  EKSL SW A+ISGY QNG    A++ F +M 
Sbjct: 349 QPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMM 408

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
            +   S + +T+ SIL+A  +L AL I   +HG+           V   L+  Y+KCG++
Sbjct: 409 PQL--SPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSI 466

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
             A  +F+ M   ++VV+WN +I GYG++GHG+ AL L+++M ++G  P   T+LSIL A
Sbjct: 467 VEARQLFDLM-VDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYA 525

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C H+GL ++G  IF+ M      +P  EHY C+VD+L RAG L++A     ++    GP 
Sbjct: 526 CSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPA 585

Query: 525 IWRALLSGCVLH 536
           +W ALL  C++H
Sbjct: 586 VWGALLGACMIH 597



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 165/345 (47%), Gaps = 25/345 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + L+S Y K GK  +   LFD+I + +++S++ +I GY+ N   E ++  F  ++
Sbjct: 248 DVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELL 307

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL--------------------- 102
            SG   NS T+VG++       +L+L+R I  L +K G+                     
Sbjct: 308 ASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQ 367

Query: 103 -ESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               LF+      L S NA+++G+  N L  +A+ LF       L PN VT+ +++  C 
Sbjct: 368 FARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACA 426

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            LG+ ++ + +HGL     L  +V V+ +++DMY+    +  A Q+F  M  K+V++W  
Sbjct: 427 QLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNA 486

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQL-HAQVVLG 280
           M+  +    +  +ALK+F EM +S I    V  L+++   +  G +  G ++ H+     
Sbjct: 487 MITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNY 546

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAII 324
           G Q        ++ +  + G L ++     ++  E     W A++
Sbjct: 547 GFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALL 591



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 110/226 (48%), Gaps = 39/226 (17%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           + P  S+ L + Y +  +++ A  LFDE PEK++ SW+ +I GY+ NG  ++++  F  M
Sbjct: 348 LQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEM 407

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
           M   L PN  T+  +L A A L  L + + +HGL+    LES+                 
Sbjct: 408 M-PQLSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSI 466

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                LF+ + +  +V+ NA++ G+  +   ++A+ LF     SG+ P  VT L+++  C
Sbjct: 467 VEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYAC 526

Query: 161 -----VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDL 201
                V+ G+    E+ H +    G          + + Y+C++D+
Sbjct: 527 SHSGLVSEGN----EIFHSMANNYGF-------QPMSEHYACMVDI 561



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 93/195 (47%), Gaps = 1/195 (0%)

Query: 272 QLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNG 331
           Q+ AQ++L G+  +L     +   +   G +   R +FN++++  L  +  +I G+  NG
Sbjct: 32  QIQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNG 91

Query: 332 CAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ 391
             + ++  +  +R+      D+ T    ++A+  L    + + LH  +   G      V 
Sbjct: 92  LPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVG 151

Query: 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE 451
           + ++  Y K    +LA  VF+ M   RD V WNT+I G+  N + E ++ ++  M + G 
Sbjct: 152 SAIVDLYFKFTRAELARKVFDVMP-ERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGL 210

Query: 452 VPDSSTYLSILNACG 466
             DS+T  ++L A  
Sbjct: 211 SFDSTTLATVLTAVA 225


>gi|302817750|ref|XP_002990550.1| hypothetical protein SELMODRAFT_327 [Selaginella moellendorffii]
 gi|300141718|gb|EFJ08427.1| hypothetical protein SELMODRAFT_327 [Selaginella moellendorffii]
          Length = 917

 Score =  249 bits (636), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 154/548 (28%), Positives = 284/548 (51%), Gaps = 35/548 (6%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           +++ Y   G+I  A   F  + E++ +SW+ +I G++  GF ++++  F  M+  G+ P+
Sbjct: 347 IMTMYSSCGRIDNAAAFFSTMVERDAISWNTIISGHAQAGFCDEAVHLFRRMLAEGITPD 406

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFE 108
            FT + ++   A +Q    A+ +  LMV+ G+E D                      LF+
Sbjct: 407 KFTFISIIDGTARMQE---AKILSELMVESGVELDVFLVSALINMHSRYGNVREARSLFD 463

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            +K+  +V   +I++ ++ +     A+      R  GL+ N  T++T +  C +L + + 
Sbjct: 464 DMKDRDIVMWTSIISSYVQHGSSDDALGCTRLMRLEGLMGNDFTLVTALNACASLTALSE 523

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC-KDVISWTRMMGLFV 227
            +LIH   I+ G     +V N++++MY+    L+ A  +F +  C K+++SW  +   +V
Sbjct: 524 GKLIHSHAIERGFAASPAVGNALINMYAKCGCLEEADLVFHQ--CGKNLVSWNTIAAAYV 581

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
             +   +AL++F+EM+   +  D V+ + +++          G ++H  ++  G++S+  
Sbjct: 582 QRDKWREALQLFQEMQLEGLKADKVSFVTVLNG---CSSASEGSKIHNILLETGMESDHI 638

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
           +S +++ MY+    LD +  +F+++  + +VSW A+I+G  ++G +REA+  F +M+ E 
Sbjct: 639 VSTALLNMYTASKSLDEASRIFSRMEFRDIVSWNAMIAGKAEHGLSREAIQMFQRMQLEG 698

Query: 348 TDSVDSITLVSILTA--SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
             + D I+ V++L A      ++L+    +  +  + G+     V N ++S + + G + 
Sbjct: 699 V-APDKISFVTVLNAFSGSSPSSLKQARLVEKLISDQGYETDTIVGNAIVSMFGRSGRLA 757

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            A   FE +   RD  SWN I+  +  +G  E AL L+ +M +    PDS T +S+L+AC
Sbjct: 758 EARRAFERIR-ERDAASWNVIVTAHAQHGEVEQALKLFRRMQQESSRPDSITLVSVLSAC 816

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI 525
            H GL  +G   F  M  E  +  SQEHYGCVVDLLARAG L  A  L  K+       +
Sbjct: 817 SHGGLIEEGYYHFTSMGREFGIAGSQEHYGCVVDLLARAGRLDQAEELLRKMPVPASYVL 876

Query: 526 WRALLSGC 533
           W  LLS C
Sbjct: 877 WMTLLSAC 884



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 137/438 (31%), Positives = 240/438 (54%), Gaps = 7/438 (1%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F+ L +P  VS N+++A F  +  FQQA  +F   +  GL P+ +T +TV+ GC A G 
Sbjct: 59  VFQSLDHPSQVSWNSLLAAFARDGQFQQAFQIFQRMKLQGLAPDRITFVTVLDGCTATGD 118

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
            +  +L+HG  ++ GL  +V V  S++ MY     ++ A ++F ++  +DV+SWT M+  
Sbjct: 119 LSRGKLLHGFVLEAGLERNVMVGTSLIKMYGKCGCVEDARRVFDKLALQDVVSWTSMIMT 178

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +V  +   +AL++F  MR S ++ + +     IS  A +  +  GK +H+QV+  G +S+
Sbjct: 179 YVQHDRCVEALELFHRMRPSGVLPNRITYATAISACAHVESMADGKLIHSQVLEDGFESD 238

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           + +S +I+ MY KCG L+ +R VF ++   + VSW AI++   Q+GC  EAL  F +M+ 
Sbjct: 239 VVVSCAIVNMYGKCGSLEDAREVFERMPHPNTVSWNAIVAACTQHGCCVEALWYFQRMQL 298

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
           +   + D +T ++IL A    A L     L+    + G+  +  V NC+++ YS CG +D
Sbjct: 299 QGGSTPDKVTFITILNACSSPATLTFGELLYECILQCGYDTHLIVGNCIMTMYSSCGRID 358

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            A   F  M   RD +SWNTII G+   G  + A+ L+ +M   G  PD  T++SI++  
Sbjct: 359 NAAAFFSTM-VERDAISWNTIISGHAQAGFCDEAVHLFRRMLAEGITPDKFTFISIID-- 415

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI 525
           G A +      I ++++ E+ V+        ++++ +R G + +A  L    ++     +
Sbjct: 416 GTARMQEAK--ILSELMVESGVELDVFLVSALINMHSRYGNVREARSLFDD-MKDRDIVM 472

Query: 526 WRALLSGCVLHVGRFQDA 543
           W +++S  V H G   DA
Sbjct: 473 WTSIISSYVQH-GSSDDA 489



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 162/585 (27%), Positives = 290/585 (49%), Gaps = 37/585 (6%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + L+  Y K G +++A  +FD++  ++VVSW+ +I  Y  +    ++++ F  M  SG+L
Sbjct: 142 TSLIKMYGKCGCVEDARRVFDKLALQDVVSWTSMIMTYVQHDRCVEALELFHRMRPSGVL 201

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------L 106
           PN  T    + A A ++++   + IH  +++ G ESD                      +
Sbjct: 202 PNRITYATAISACAHVESMADGKLIHSQVLEDGFESDVVVSCAIVNMYGKCGSLEDAREV 261

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFR-GSGLVPNAVTMLTVIRGCVALGS 165
           FE + +P  VS NAIVA    +    +A+  F   +   G  P+ VT +T++  C +  +
Sbjct: 262 FERMPHPNTVSWNAIVAACTQHGCCVEALWYFQRMQLQGGSTPDKVTFITILNACSSPAT 321

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
               EL++   ++ G    + V N ++ MYS    +D A   F  M  +D ISW  ++  
Sbjct: 322 LTFGELLYECILQCGYDTHLIVGNCIMTMYSSCGRIDNAAAFFSTMVERDAISWNTIISG 381

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
                +  +A+ +FR M    I  D    +++I   A    ++  K L   +V  G++ +
Sbjct: 382 HAQAGFCDEAVHLFRRMLAEGITPDKFTFISIIDGTA---RMQEAKILSELMVESGVELD 438

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           + L +++I M+S+ G++  +RS+F+ + ++ +V WT+IIS YVQ+G + +AL     MR 
Sbjct: 439 VFLVSALINMHSRYGNVREARSLFDDMKDRDIVMWTSIISSYVQHGSSDDALGCTRLMRL 498

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
           E     D  TLV+ L A   L AL     +H  A E GF    +V N LI+ Y+KCG ++
Sbjct: 499 EGLMGND-FTLVTALNACASLTALSEGKLIHSHAIERGFAASPAVGNALINMYAKCGCLE 557

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            A +VF + G  +++VSWNTI   Y        AL L+ +M   G   D  +++++LN C
Sbjct: 558 EADLVFHQCG--KNLVSWNTIAAAYVQRDKWREALQLFQEMQLEGLKADKVSFVTVLNGC 615

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI 525
             A   ++G  I N ++ E  ++        ++++   +  L +AS +  + +E      
Sbjct: 616 SSA---SEGSKIHNILL-ETGMESDHIVSTALLNMYTASKSLDEASRIFSR-MEFRDIVS 670

Query: 526 WRALLSGCVLHVGRFQDAEALRSGSQKKGII--KIPGISFLNSTS 568
           W A+++G   H G  ++A  +    Q +G+   KI  ++ LN+ S
Sbjct: 671 WNAMIAGKAEH-GLSREAIQMFQRMQLEGVAPDKISFVTVLNAFS 714



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 136/519 (26%), Positives = 253/519 (48%), Gaps = 29/519 (5%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTM 74
           Y K G +++A  +F  +   + VSW+ ++  ++ +G  +++ + F  M L GL P+  T 
Sbjct: 47  YGKCGCVEDAVTVFQSLDHPSQVSWNSLLAAFARDGQFQQAFQIFQRMKLQGLAPDRITF 106

Query: 75  VGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFEGLKN 112
           V VL       +L   + +HG +++ GLE +                      +F+ L  
Sbjct: 107 VTVLDGCTATGDLSRGKLLHGFVLEAGLERNVMVGTSLIKMYGKCGCVEDARRVFDKLAL 166

Query: 113 PYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELI 172
             +VS  +++  ++ +    +A+ LF+  R SG++PN +T  T I  C  + S A  +LI
Sbjct: 167 QDVVSWTSMIMTYVQHDRCVEALELFHRMRPSGVLPNRITYATAISACAHVESMADGKLI 226

Query: 173 HGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYA 232
           H   ++ G   DV V+ ++++MY     L+ A ++F  M   + +SW  ++         
Sbjct: 227 HSQVLEDGFESDVVVSCAIVNMYGKCGSLEDAREVFERMPHPNTVSWNAIVAACTQHGCC 286

Query: 233 GDALKIFREMR-KSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
            +AL  F+ M+ +     D V  + +++  +    L  G+ L+  ++  G  + L + N 
Sbjct: 287 VEALWYFQRMQLQGGSTPDKVTFITILNACSSPATLTFGELLYECILQCGYDTHLIVGNC 346

Query: 292 IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
           I+ MYS CG +D++ + F+ + E+  +SW  IISG+ Q G   EA++ F +M  E   + 
Sbjct: 347 IMTMYSSCGRIDNAAAFFSTMVERDAISWNTIISGHAQAGFCDEAVHLFRRMLAEGI-TP 405

Query: 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVF 411
           D  T +SI+  +  +   +I   L  +  E+G      + + LI+ +S+ GNV  A  +F
Sbjct: 406 DKFTFISIIDGTARMQEAKI---LSELMVESGVELDVFLVSALINMHSRYGNVREARSLF 462

Query: 412 EEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLT 471
           ++M   RD+V W +II  Y  +G  + AL     M   G + +  T ++ LNAC      
Sbjct: 463 DDMKD-RDIVMWTSIISSYVQHGSSDDALGCTRLMRLEGLMGNDFTLVTALNACASLTAL 521

Query: 472 NDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
           ++G +I +  IE      S      ++++ A+ GCL +A
Sbjct: 522 SEGKLIHSHAIERG-FAASPAVGNALINMYAKCGCLEEA 559



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 126/485 (25%), Positives = 236/485 (48%), Gaps = 58/485 (11%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  S L++ + + G ++EA +LFD++ ++++V W+ +I  Y  +G  + ++     M
Sbjct: 437 LDVFLVSALINMHSRYGNVREARSLFDDMKDRDIVMWTSIISSYVQHGSSDDALGCTRLM 496

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL-------------------- 102
            L GL+ N FT+V  L A A L  L   + IH   ++ G                     
Sbjct: 497 RLEGLMGNDFTLVTALNACASLTALSEGKLIHSHAIERGFAASPAVGNALINMYAKCGCL 556

Query: 103 -ESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC- 160
            E+DL        LVS N I A ++    +++A+ LF   +  GL  + V+ +TV+ GC 
Sbjct: 557 EEADLVFHQCGKNLVSWNTIAAAYVQRDKWREALQLFQEMQLEGLKADKVSFVTVLNGCS 616

Query: 161 -VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
             + GS+     IH + ++ G+  D  V+ ++L+MY+    LD A +IF  ME +D++SW
Sbjct: 617 SASEGSK-----IHNILLETGMESDHIVSTALLNMYTASKSLDEASRIFSRMEFRDIVSW 671

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILG----DLKRGKQLHA 275
             M+    +   + +A+++F+ M+   +  D ++ + ++  NA  G     LK+ + +  
Sbjct: 672 NAMIAGKAEHGLSREAIQMFQRMQLEGVAPDKISFVTVL--NAFSGSSPSSLKQARLVEK 729

Query: 276 QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
            +   G +++  + N+I++M+ + G L  +R  F +I E+   SW  I++ + Q+G   +
Sbjct: 730 LISDQGYETDTIVGNAIVSMFGRSGRLAEARRAFERIRERDAASWNVIVTAHAQHGEVEQ 789

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV----- 390
           AL  F +M+QE +   DSITLVS+L+A             HG   E G+  + S+     
Sbjct: 790 ALKLFRRMQQESSRP-DSITLVSVLSACS-----------HGGLIEEGYYHFTSMGREFG 837

Query: 391 -------QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALY 443
                    C++   ++ G +D A  +  +M      V W T++    V G  + A  + 
Sbjct: 838 IAGSQEHYGCVVDLLARAGRLDQAEELLRKMPVPASYVLWMTLLSACKVQGDEKRAKRVA 897

Query: 444 HKMTE 448
            ++ E
Sbjct: 898 ERVME 902



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 99/386 (25%), Positives = 185/386 (47%), Gaps = 13/386 (3%)

Query: 152 TMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM 211
           T L ++  C    + A    +H          D  V N+ + MY     ++ A+ +F+ +
Sbjct: 4   TFLALLGLCAKKSAIAEGRFVHSRVEASEFRRDDLVQNATIHMYGKCGCVEDAVTVFQSL 63

Query: 212 ECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGK 271
           +    +SW  ++  F        A +IF+ M+   +  D +  + ++      GDL RGK
Sbjct: 64  DHPSQVSWNSLLAAFARDGQFQQAFQIFQRMKLQGLAPDRITFVTVLDGCTATGDLSRGK 123

Query: 272 QLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNG 331
            LH  V+  GL+  + +  S+I MY KCG ++ +R VF+++  + +VSWT++I  YVQ+ 
Sbjct: 124 LLHGFVLEAGLERNVMVGTSLIKMYGKCGCVEDARRVFDKLALQDVVSWTSMIMTYVQHD 183

Query: 332 CAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ 391
              EAL  F +MR       + IT  + ++A   + ++     +H    E GF     V 
Sbjct: 184 RCVEALELFHRMRPSGVLP-NRITYATAISACAHVESMADGKLIHSQVLEDGFESDVVVS 242

Query: 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMT-ETG 450
             +++ Y KCG+++ A  VFE M    + VSWN I+     +G    AL  + +M  + G
Sbjct: 243 CAIVNMYGKCGSLEDAREVFERMPH-PNTVSWNAIVAACTQHGCCVEALWYFQRMQLQGG 301

Query: 451 EVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY----GCVVDLLARAGC 506
             PD  T+++ILNAC     ++   + F +++ E  ++   + +     C++ + +  G 
Sbjct: 302 STPDKVTFITILNAC-----SSPATLTFGELLYECILQCGYDTHLIVGNCIMTMYSSCGR 356

Query: 507 LSDASGLAGKLLEGMGPNIWRALLSG 532
           + +A+     ++E    + W  ++SG
Sbjct: 357 IDNAAAFFSTMVERDAIS-WNTIISG 381



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 101/332 (30%), Positives = 173/332 (52%), Gaps = 28/332 (8%)

Query: 250 DTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVF 309
           D    L L+ + A    +  G+ +H++V     + +  + N+ I MY KCG ++ + +VF
Sbjct: 1   DRGTFLALLGLCAKKSAIAEGRFVHSRVEASEFRRDDLVQNATIHMYGKCGCVEDAVTVF 60

Query: 310 NQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSIL---TASGEL 366
             +   S VSW ++++ + ++G  ++A   F +M+ +   + D IT V++L   TA+G+L
Sbjct: 61  QSLDHPSQVSWNSLLAAFARDGQFQQAFQIFQRMKLQGL-APDRITFVTVLDGCTATGDL 119

Query: 367 AALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTI 426
           +  ++   LHG   EAG  R   V   LI  Y KCG V+ A  VF+++  L+DVVSW ++
Sbjct: 120 SRGKL---LHGFVLEAGLERNVMVGTSLIKMYGKCGCVEDARRVFDKLA-LQDVVSWTSM 175

Query: 427 IYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENK 486
           I  Y  +     AL L+H+M  +G +P+  TY + ++AC H     DG +I +Q++E+  
Sbjct: 176 IMTYVQHDRCVEALELFHRMRPSGVLPNRITYATAISACAHVESMADGKLIHSQVLEDG- 234

Query: 487 VKPSQEHYGC-VVDLLARAGCLSDASGLAGKLLEGMG-PNI--WRALLSGCVLH------ 536
              S     C +V++  + G L DA     ++ E M  PN   W A+++ C  H      
Sbjct: 235 -FESDVVVSCAIVNMYGKCGSLEDAR----EVFERMPHPNTVSWNAIVAACTQHGCCVEA 289

Query: 537 VGRFQDAEALRSGSQKKGIIKIPGISFLNSTS 568
           +  FQ  + L+ GS      K+  I+ LN+ S
Sbjct: 290 LWYFQRMQ-LQGGSTPD---KVTFITILNACS 317


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  249 bits (636), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 165/528 (31%), Positives = 254/528 (48%), Gaps = 79/528 (14%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRG---SGLVPNAVTMLTVIRGCVA 162
           LFE ++ P     N ++ G   N L    V   +F+      G+ PN+ T   +++ C  
Sbjct: 88  LFESIEQPNQFIWNTMIRG---NSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAK 144

Query: 163 LGSRALCELIHGLTIKLGLILDVSVNNSVLDMY---------------SCLMD------- 200
           +G+    + IHG  +KLGL  D  V+ S+++MY               S L D       
Sbjct: 145 VGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTAL 204

Query: 201 ---------LDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDT 251
                    LD A ++F E+  +D +SW  M+  +       +AL  F+EM+++ +  + 
Sbjct: 205 ITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNE 264

Query: 252 VALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQ 311
             ++ ++S  A  G L+ G  + + +   GL S LRL N++I MYSKCGDLD +R +F  
Sbjct: 265 STMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEG 324

Query: 312 ITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEI 371
           I EK ++SW  +I GY      +EAL  F KM+Q   +  D +T VSIL A   L AL++
Sbjct: 325 ICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPND-VTFVSILPACAYLGALDL 383

Query: 372 CLQLHGIAFEA--GFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYG 429
              +H    +   G     S+   LI  Y+KCGN++ A  VF  M   + + SWN +I G
Sbjct: 384 GKWIHAYIDKKFLGLTN-TSLWTSLIDMYAKCGNIEAAKQVFAGMK-PKSLGSWNAMISG 441

Query: 430 YGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKP 489
             ++GH   AL L+ +M + G  PD  T++ +L+AC HAGL   G   F+ M+E+  + P
Sbjct: 442 LAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISP 501

Query: 490 SQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN--IWRALLSGCVLH----------- 536
             +HYGC++DLL RAG   +A  L   +   M P+  IW +LL  C +H           
Sbjct: 502 KLQHYGCMIDLLGRAGLFDEAEALMKNM--EMKPDGAIWGSLLGACRVHGNVELGEFAAK 559

Query: 537 ----------------------VGRFQDAEALRSGSQKKGIIKIPGIS 562
                                  GR+ D   +R+    KG+ K+PG S
Sbjct: 560 HLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKKVPGCS 607



 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 143/512 (27%), Positives = 233/512 (45%), Gaps = 61/512 (11%)

Query: 19  GKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVL 78
           G +  A  LF+ I + N   W+ +I G S++     ++  +  M+L G+ PNS+T   +L
Sbjct: 80  GNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLL 139

Query: 79  VAAAGLQNLELARSIHGLMVKFGLESD--------------------------------- 105
            + A +   +  + IHG ++K GLESD                                 
Sbjct: 140 KSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAV 199

Query: 106 --------------------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSG 145
                               LFE +     VS NA++AG+  +  F++A+  F   + + 
Sbjct: 200 SFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRAN 259

Query: 146 LVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAI 205
           + PN  TM+TV+  C   GS  L   +       GL  ++ + N+++DMYS   DLD A 
Sbjct: 260 VAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKAR 319

Query: 206 QIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILG 265
            +F  +  KD+ISW  M+G +       +AL +FR+M++S +  + V  ++++   A LG
Sbjct: 320 DLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLG 379

Query: 266 DLKRGKQLHAQVVLGGLQ-SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAII 324
            L  GK +HA +    L  +   L  S+I MY+KCG++++++ VF  +  KSL SW A+I
Sbjct: 380 ALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMI 439

Query: 325 SGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGF 384
           SG   +G A  AL  F +MR E  +  D IT V +L+A      +E+  Q      E  +
Sbjct: 440 SGLAMHGHANMALELFRQMRDEGFEP-DDITFVGVLSACSHAGLVELGRQCFSSMVE-DY 497

Query: 385 PRYRSVQN--CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETA-LA 441
                +Q+  C+I    + G  D A  + + M    D   W +++    V+G+ E    A
Sbjct: 498 DISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFA 557

Query: 442 LYHKMTETGEVPDSSTYLSILNACGHAGLTND 473
             H      E P +   LS  N    AG  +D
Sbjct: 558 AKHLFELEPENPGAYVLLS--NIYATAGRWDD 587



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 169/337 (50%), Gaps = 26/337 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D  + + L++ Y   G + +A  LF+EIP ++ VSW+ +I GY+ +G  E+++  F  M 
Sbjct: 197 DAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMK 256

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES------------------- 104
            + + PN  TMV VL A A   +LEL   +   +   GL S                   
Sbjct: 257 RANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLD 316

Query: 105 ---DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
              DLFEG+    ++S N ++ G+ +   +++A+ LF   + S + PN VT ++++  C 
Sbjct: 317 KARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACA 376

Query: 162 ALGSRALCELIHGLTIK--LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
            LG+  L + IH    K  LGL  + S+  S++DMY+   +++AA Q+F  M+ K + SW
Sbjct: 377 YLGALDLGKWIHAYIDKKFLGLT-NTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSW 435

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
             M+       +A  AL++FR+MR      D +  + ++S  +  G ++ G+Q  + +V 
Sbjct: 436 NAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVE 495

Query: 280 G-GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK 315
              +  +L+    +I +  + G  D + ++   +  K
Sbjct: 496 DYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMK 532



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 100/372 (26%), Positives = 178/372 (47%), Gaps = 42/372 (11%)

Query: 200 DLDAAIQIFREMECKDVISWTRMM-GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLI 258
           +L  A+ +F  +E  +   W  M+ G  +     G A+  +  M    +  ++     L+
Sbjct: 81  NLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVG-AIDFYVRMLLCGVEPNSYTFPFLL 139

Query: 259 SVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLV 318
              A +G  + GKQ+H  V+  GL+S+  +  S+I MY++ G+L  +  VF++ + +  V
Sbjct: 140 KSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAV 199

Query: 319 SWTAIISGYVQNGC---AR----------------------------EALNQFIKMRQEK 347
           S+TA+I+GY   GC   AR                            EAL  F +M++  
Sbjct: 200 SFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRAN 259

Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
               +S T+V++L+A  +  +LE+   +     + G      + N LI  YSKCG++D A
Sbjct: 260 VAPNES-TMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKA 318

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
             +FE +   +D++SWN +I GY      + ALAL+ KM ++   P+  T++SIL AC +
Sbjct: 319 RDLFEGI-CEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAY 377

Query: 468 AGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN--- 524
            G  + G  I   + ++     +   +  ++D+ A+ G +  A     ++  GM P    
Sbjct: 378 LGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAK----QVFAGMKPKSLG 433

Query: 525 IWRALLSGCVLH 536
            W A++SG  +H
Sbjct: 434 SWNAMISGLAMH 445


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  249 bits (636), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 139/433 (32%), Positives = 235/433 (54%), Gaps = 6/433 (1%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F  +K P +   N ++ G ++   F  A+ L+   RG G +PN  T+  V++ C     
Sbjct: 70  VFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLD 129

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
             L   IH L +K G   DV V  S+L +Y    + D A+++F ++  K+V+SWT ++  
Sbjct: 130 VRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITG 189

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           ++   +  +A+  F+++ +  +  D+ +L+ +++  A LGD   G+ +   +   G+   
Sbjct: 190 YISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRN 249

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           + ++ S++ MY KCG+L+ +  +F+ + EK +VSW+ +I GY  NG  ++AL+ F +M+ 
Sbjct: 250 VFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQS 309

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
           E     D  T+V +L+A   L AL++ +    +     F     +   LI  YSKCG+V 
Sbjct: 310 ENLKP-DCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVT 368

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            A+ +F  M   +D V WN ++ G  +NGH +   +L+  + + G  PD +T++ +L  C
Sbjct: 369 QAWEIFTAMK-RKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGC 427

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN- 524
            H G  N+G   FN M     + PS EHYGC+VDLL RAG L++A  L   +   M PN 
Sbjct: 428 THGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNM--PMKPNA 485

Query: 525 -IWRALLSGCVLH 536
            +W ALL GC LH
Sbjct: 486 VVWGALLGGCKLH 498



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 113/469 (24%), Positives = 206/469 (43%), Gaps = 27/469 (5%)

Query: 19  GKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVL 78
           G    ++ +F ++ E N+  W+ +I G       + ++  +  M   G LPN+FT+  VL
Sbjct: 62  GSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVL 121

Query: 79  VAAAGLQNLELARSIHGLMVKFGLESD----------------------LFEGLKNPYLV 116
            A A   ++ L   IH L+VK G + D                      +F+ + +  +V
Sbjct: 122 KACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVV 181

Query: 117 SCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLT 176
           S  AI+ G+I++  F++A+  F      GL P++ +++ V+  C  LG     E I    
Sbjct: 182 SWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYI 241

Query: 177 IKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDAL 236
              G+  +V V  S+LDMY    +L+ A  IF  M  KD++SW+ M+  +        AL
Sbjct: 242 SDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQAL 301

Query: 237 KIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMY 296
            +F +M+   +  D   ++ ++S  A LG L  G    + +      S   L  ++I MY
Sbjct: 302 DLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMY 361

Query: 297 SKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITL 356
           SKCG +  +  +F  +  K  V W A++ G   NG A+   + F  + ++     D  T 
Sbjct: 362 SKCGSVTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLF-SLVEKHGIRPDENTF 420

Query: 357 VSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN--CLISSYSKCGNVDLAYIVFEEM 414
           + +L        +    Q      +  F    S+++  C++    + G ++ A+ +   M
Sbjct: 421 IGLLCGCTHGGFVNEGRQFFN-NMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNM 479

Query: 415 GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
               + V W  ++ G  ++     A  +  K+ E  E  +S  Y+ + N
Sbjct: 480 PMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIEL-EPWNSGNYVQLSN 527



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 104/395 (26%), Positives = 184/395 (46%), Gaps = 31/395 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + LLS Y K     +A  +FD+IP+KNVVSW+ +I GY  +G   +++ AF  ++
Sbjct: 148 DVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLL 207

Query: 64  LSGLLPNSFTMVGVLVAAAGL-------------------QNLELARSIHGLMVKFG-LE 103
             GL P+SF++V VL A A L                   +N+ +A S+  + VK G LE
Sbjct: 208 EMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLE 267

Query: 104 SD--LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +F  +    +VS + ++ G+  N L QQA+ LF   +   L P+  TM+ V+  C 
Sbjct: 268 RANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACA 327

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            LG+  L      L  +   + +  +  +++DMYS    +  A +IF  M+ KD + W  
Sbjct: 328 TLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDRVVWNA 387

Query: 222 MM-GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV-L 279
           MM GL ++  +A     +F  + K  I  D    + L+      G +  G+Q    +  +
Sbjct: 388 MMVGLSMN-GHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRV 446

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK-SLVSWTAIISG---YVQNGCARE 335
             L   +     ++ +  + G L+ +  + N +  K + V W A++ G   +     A +
Sbjct: 447 FSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQ 506

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAALE 370
            L + I++  E  +S + + L +I + +      E
Sbjct: 507 VLKKLIEL--EPWNSGNYVQLSNIYSGNHRWEEAE 539



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 103/204 (50%), Gaps = 2/204 (0%)

Query: 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
           K +HA+++   L  +  L N I+      G  + S+ VF+Q+ E ++  W  +I G V  
Sbjct: 33  KHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSK 92

Query: 331 GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV 390
            C  +A++ +  MR       ++ T+  +L A      + + L++H +  +AG+     V
Sbjct: 93  DCFDDAIHLYGSMRGGGFLP-NNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFV 151

Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
           +  L+S Y KC N D A  VF+++   ++VVSW  II GY  +GH   A+  + K+ E G
Sbjct: 152 KTSLLSLYVKCDNFDDALKVFDDIP-DKNVVSWTAIITGYISSGHFREAIGAFKKLLEMG 210

Query: 451 EVPDSSTYLSILNACGHAGLTNDG 474
             PDS + + +L AC   G    G
Sbjct: 211 LKPDSFSLVKVLAACARLGDCTSG 234


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  249 bits (636), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 148/494 (29%), Positives = 253/494 (51%), Gaps = 39/494 (7%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F  +K P +   N ++ G ++   F  A+ L+   RG G +PN  T+  V++ C     
Sbjct: 70  VFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLD 129

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
             L   IH L +K G   DV V  S+L +Y    + D A+++F ++  K+V+SWT ++  
Sbjct: 130 VRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITG 189

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           ++   +  +A+  F+++ +  +  D+ +L+ +++  A LGD   G+ +   +   G+   
Sbjct: 190 YISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRN 249

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           + ++ S++ MY KCG+L+ +  +F+ + EK +VSW+ +I GY  NG  ++AL+ F +M+ 
Sbjct: 250 VFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQS 309

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
           E     D  T+V +L+A   L AL++ +    +     F     +   LI  YSKCG+V 
Sbjct: 310 ENLKP-DCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVT 368

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            A+ +F  M   +D V WN ++ G  +NGH +   +L+  + + G  PD +T++ +L  C
Sbjct: 369 QAWEIFTAMK-KKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGC 427

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN- 524
            H G  N+G   FN M     + PS EHYGC+VDLL RAG L++A  L   +   M PN 
Sbjct: 428 THGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNM--PMKPNA 485

Query: 525 -IWRALLSGCVLHVG---------------------------------RFQDAEALRSGS 550
            +W ALL GC LH                                   R+++AE +RS  
Sbjct: 486 VVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTM 545

Query: 551 QKKGIIKIPGISFL 564
           +++ I KI   S++
Sbjct: 546 KEQQIQKIRACSWI 559



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 113/469 (24%), Positives = 207/469 (44%), Gaps = 27/469 (5%)

Query: 19  GKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVL 78
           G    ++ +F ++ E N+  W+ +I G       + ++  +  M   G LPN+FT+  VL
Sbjct: 62  GSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVL 121

Query: 79  VAAAGLQNLELARSIHGLMVKFGLESD----------------------LFEGLKNPYLV 116
            A A   ++ L   IH L+VK G + D                      +F+ + +  +V
Sbjct: 122 KACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVV 181

Query: 117 SCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLT 176
           S  AI+ G+I++  F++A+  F      GL P++ +++ V+  C  LG     E I    
Sbjct: 182 SWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYI 241

Query: 177 IKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDAL 236
              G+  +V V  S+LDMY    +L+ A  IF  M  KD++SW+ M+  +        AL
Sbjct: 242 SDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQAL 301

Query: 237 KIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMY 296
            +F +M+   +  D   ++ ++S  A LG L  G    + +      S   L  ++I MY
Sbjct: 302 DLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMY 361

Query: 297 SKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITL 356
           SKCG +  +  +F  + +K  V W A++ G   NG A+   + F  + ++     D  T 
Sbjct: 362 SKCGSVTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLF-SLVEKHGIRPDENTF 420

Query: 357 VSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN--CLISSYSKCGNVDLAYIVFEEM 414
           + +L        +    Q      +  F    S+++  C++    + G ++ A+ +   M
Sbjct: 421 IGLLCGCTHGGFVNEGRQFFN-NMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNM 479

Query: 415 GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
               + V W  ++ G  ++     A  +  K+ E  E  +S  Y+ + N
Sbjct: 480 PMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIEL-EPWNSGNYVQLSN 527



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 104/395 (26%), Positives = 184/395 (46%), Gaps = 31/395 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + LLS Y K     +A  +FD+IP+KNVVSW+ +I GY  +G   +++ AF  ++
Sbjct: 148 DVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLL 207

Query: 64  LSGLLPNSFTMVGVLVAAAGL-------------------QNLELARSIHGLMVKFG-LE 103
             GL P+SF++V VL A A L                   +N+ +A S+  + VK G LE
Sbjct: 208 EMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLE 267

Query: 104 SD--LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +F  +    +VS + ++ G+  N L QQA+ LF   +   L P+  TM+ V+  C 
Sbjct: 268 RANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACA 327

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            LG+  L      L  +   + +  +  +++DMYS    +  A +IF  M+ KD + W  
Sbjct: 328 TLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDRVVWNA 387

Query: 222 MM-GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV-L 279
           MM GL ++  +A     +F  + K  I  D    + L+      G +  G+Q    +  +
Sbjct: 388 MMVGLSMN-GHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRV 446

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK-SLVSWTAIISG---YVQNGCARE 335
             L   +     ++ +  + G L+ +  + N +  K + V W A++ G   +     A +
Sbjct: 447 FSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQ 506

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAALE 370
            L + I++  E  +S + + L +I + +      E
Sbjct: 507 VLKKLIEL--EPWNSGNYVQLSNIYSGNHRWEEAE 539



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 103/204 (50%), Gaps = 2/204 (0%)

Query: 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
           K +HA+++   L  +  L N I+      G  + S+ VF+Q+ E ++  W  +I G V  
Sbjct: 33  KHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSK 92

Query: 331 GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV 390
            C  +A++ +  MR       ++ T+  +L A      + + L++H +  +AG+     V
Sbjct: 93  DCFDDAIHLYGSMRGGGFLP-NNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFV 151

Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
           +  L+S Y KC N D A  VF+++   ++VVSW  II GY  +GH   A+  + K+ E G
Sbjct: 152 KTSLLSLYVKCDNFDDALKVFDDIP-DKNVVSWTAIITGYISSGHFREAIGAFKKLLEMG 210

Query: 451 EVPDSSTYLSILNACGHAGLTNDG 474
             PDS + + +L AC   G    G
Sbjct: 211 LKPDSFSLVKVLAACARLGDCTSG 234


>gi|255559709|ref|XP_002520874.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540005|gb|EEF41583.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 833

 Score =  249 bits (636), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 157/557 (28%), Positives = 281/557 (50%), Gaps = 25/557 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEK-NVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           DP+  + L+  YFK G+  EA  LF ++ ++ N+V+W+++I G+  NG  E S++ +   
Sbjct: 173 DPFLETALIDTYFKCGRPTEARYLFKKLKDRSNIVAWNVMIGGFGENGLWENSLEYYLLA 232

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
               +   S +    L A    + +   + +H   +K G E D                 
Sbjct: 233 KTENVKVVSSSFTCTLSACGQGEFVSFGKQVHCDAIKVGFEDDPYVHTSLLTMYGKCQMI 292

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +F  + +  +   NA+++ ++ N     A+ ++   +   ++ ++ T+L V+   
Sbjct: 293 ESAEKVFNEVPDKEIELWNALISAYVGNGYAYDALRIYKQMKLCTVLSDSFTILNVLTSS 352

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
              G   L  LIH   +K  L   +++ +++L MYS   D + A  IF  M+ +DV++W 
Sbjct: 353 SMAGLYDLGRLIHTEIVKRPLQSSITIQSALLTMYSKFGDSNYANSIFSTMKERDVVAWG 412

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++  F       +AL  FR M    +  D+  + ++IS    L  +  G  +H  V+  
Sbjct: 413 SVISGFCQNRKYKEALDFFRAMEADLVKPDSDIMASIISACTGLEKVDLGCTIHGFVIKS 472

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           GLQ ++ +++S++ MYSK G  + + ++F+ +  K+LV+W +IIS Y +N     ++N F
Sbjct: 473 GLQLDVFVASSLLDMYSKFGFPERAGNIFSDMPLKNLVAWNSIISCYCRNNLPDLSINLF 532

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            ++ +      DS++  S+L A   +AAL     +HG       P    V+N LI  Y K
Sbjct: 533 SQVLRNDLYP-DSVSFTSVLAAISSVAALLKGKSVHGYLVRLWIPFDLQVENTLIDMYIK 591

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CG +  A  +FE +   +++V+WN++I GYG +G    A+ L+ +M  +G  PD  T+LS
Sbjct: 592 CGLLKYAQHIFERIS-EKNLVAWNSMIGGYGSHGECSKAIELFDEMRSSGIKPDDVTFLS 650

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           +L++C H+GL  +GL +F  M  +  ++P  EHY  +VDL  RAGCL DA      +   
Sbjct: 651 LLSSCNHSGLIEEGLHLFEMMKMKFGIEPRMEHYVNIVDLYGRAGCLGDAYSFVKNMPVE 710

Query: 521 MGPNIWRALLSGCVLHV 537
              +IW +LL  C +H+
Sbjct: 711 PDRSIWLSLLCSCKIHL 727



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 132/491 (26%), Positives = 248/491 (50%), Gaps = 27/491 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           DPY  + LL+ Y K   I+ AE +F+E+P+K +  W+ +I  Y  NG+   +++ +  M 
Sbjct: 275 DPYVHTSLLTMYGKCQMIESAEKVFNEVPDKEIELWNALISAYVGNGYAYDALRIYKQMK 334

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------- 106
           L  +L +SFT++ VL +++     +L R IH  +VK  L+S +                 
Sbjct: 335 LCTVLSDSFTILNVLTSSSMAGLYDLGRLIHTEIVKRPLQSSITIQSALLTMYSKFGDSN 394

Query: 107 -----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                F  +K   +V+  ++++GF  N+ +++A+  F       + P++  M ++I  C 
Sbjct: 395 YANSIFSTMKERDVVAWGSVISGFCQNRKYKEALDFFRAMEADLVKPDSDIMASIISACT 454

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            L    L   IHG  IK GL LDV V +S+LDMYS     + A  IF +M  K++++W  
Sbjct: 455 GLEKVDLGCTIHGFVIKSGLQLDVFVASSLLDMYSKFGFPERAGNIFSDMPLKNLVAWNS 514

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++  +        ++ +F ++ ++ +  D+V+  ++++  + +  L +GK +H  +V   
Sbjct: 515 IISCYCRNNLPDLSINLFSQVLRNDLYPDSVSFTSVLAAISSVAALLKGKSVHGYLVRLW 574

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           +  +L++ N++I MY KCG L  ++ +F +I+EK+LV+W ++I GY  +G   +A+  F 
Sbjct: 575 IPFDLQVENTLIDMYIKCGLLKYAQHIFERISEKNLVAWNSMIGGYGSHGECSKAIELFD 634

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQL-HGIAFEAGF-PRYRSVQNCLISSYS 399
           +MR       D +T +S+L++      +E  L L   +  + G  PR     N ++  Y 
Sbjct: 635 EMRSSGIKP-DDVTFLSLLSSCNHSGLIEEGLHLFEMMKMKFGIEPRMEHYVN-IVDLYG 692

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           + G +  AY   + M    D   W +++    ++ + E    + +K+    E    S Y+
Sbjct: 693 RAGCLGDAYSFVKNMPVEPDRSIWLSLLCSCKIHLNLELGEMVANKLLNM-EPSKGSNYV 751

Query: 460 SILNACGHAGL 470
            +LN  G A L
Sbjct: 752 QLLNLYGEAEL 762



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 126/475 (26%), Positives = 244/475 (51%), Gaps = 22/475 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEK-----NVVSWSIVIHGYSINGFHEKSMKA 58
           D Y +S L++ Y K G   +A  +FD++P+      +V  W+ +I GY   G  E+ M  
Sbjct: 87  DQYITSSLINIYVKCGTFTDAVKVFDQLPKSGVSVDDVTIWNSIIDGYFRFGQLEEGMVQ 146

Query: 59  FSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---LFEGLKN-PY 114
           F  M  SG          ++          L  ++     K G  ++   LF+ LK+   
Sbjct: 147 FGRMQSSGYKEGKQIHSYIVRNMLNFDPF-LETALIDTYFKCGRPTEARYLFKKLKDRSN 205

Query: 115 LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC-----VALGSRALC 169
           +V+ N ++ GF  N L++ ++  +   +   +   + +    +  C     V+ G +  C
Sbjct: 206 IVAWNVMIGGFGENGLWENSLEYYLLAKTENVKVVSSSFTCTLSACGQGEFVSFGKQVHC 265

Query: 170 ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDF 229
           +      IK+G   D  V+ S+L MY     +++A ++F E+  K++  W  ++  +V  
Sbjct: 266 D-----AIKVGFEDDPYVHTSLLTMYGKCQMIESAEKVFNEVPDKEIELWNALISAYVGN 320

Query: 230 EYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLS 289
            YA DAL+I+++M+   ++ D+  +LN+++ +++ G    G+ +H ++V   LQS + + 
Sbjct: 321 GYAYDALRIYKQMKLCTVLSDSFTILNVLTSSSMAGLYDLGRLIHTEIVKRPLQSSITIQ 380

Query: 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD 349
           ++++ MYSK GD + + S+F+ + E+ +V+W ++ISG+ QN   +EAL+ F  M  +   
Sbjct: 381 SALLTMYSKFGDSNYANSIFSTMKERDVVAWGSVISGFCQNRKYKEALDFFRAMEADLVK 440

Query: 350 SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYI 409
             DS  + SI++A   L  +++   +HG   ++G      V + L+  YSK G  + A  
Sbjct: 441 P-DSDIMASIISACTGLEKVDLGCTIHGFVIKSGLQLDVFVASSLLDMYSKFGFPERAGN 499

Query: 410 VFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           +F +M  L+++V+WN+II  Y  N   + ++ L+ ++      PDS ++ S+L A
Sbjct: 500 IFSDMP-LKNLVAWNSIISCYCRNNLPDLSINLFSQVLRNDLYPDSVSFTSVLAA 553



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 105/418 (25%), Positives = 196/418 (46%), Gaps = 28/418 (6%)

Query: 65  SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAG 124
           S +    FT   +L A A L NL+  ++IH  ++  GL SD        Y+ S  +++  
Sbjct: 47  SPVYTTRFTYPSLLKACASLSNLQYGKTIHSSIITTGLHSD-------QYITS--SLINI 97

Query: 125 FINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI-----------RGCVALGSRALC---- 169
           ++    F  AV +F+    SG+  + VT+   I            G V  G         
Sbjct: 98  YVKCGTFTDAVKVFDQLPKSGVSVDDVTIWNSIIDGYFRFGQLEEGMVQFGRMQSSGYKE 157

Query: 170 -ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK-DVISWTRMMGLFV 227
            + IH   ++  L  D  +  +++D Y        A  +F++++ + ++++W  M+G F 
Sbjct: 158 GKQIHSYIVRNMLNFDPFLETALIDTYFKCGRPTEARYLFKKLKDRSNIVAWNVMIGGFG 217

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
           +     ++L+ +   +   +   + +    +S       +  GKQ+H   +  G + +  
Sbjct: 218 ENGLWENSLEYYLLAKTENVKVVSSSFTCTLSACGQGEFVSFGKQVHCDAIKVGFEDDPY 277

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
           +  S++ MY KC  ++S+  VFN++ +K +  W A+IS YV NG A +AL  + +M+   
Sbjct: 278 VHTSLLTMYGKCQMIESAEKVFNEVPDKEIELWNALISAYVGNGYAYDALRIYKQMKLCT 337

Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
             S DS T++++LT+S      ++   +H    +       ++Q+ L++ YSK G+ + A
Sbjct: 338 VLS-DSFTILNVLTSSSMAGLYDLGRLIHTEIVKRPLQSSITIQSALLTMYSKFGDSNYA 396

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
             +F  M   RDVV+W ++I G+  N   + AL  +  M      PDS    SI++AC
Sbjct: 397 NSIFSTMK-ERDVVAWGSVISGFCQNRKYKEALDFFRAMEADLVKPDSDIMASIISAC 453



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 85/359 (23%), Positives = 162/359 (45%), Gaps = 28/359 (7%)

Query: 132 QQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSV 191
           +Q +     +  S +     T  ++++ C +L +    + IH   I  GL  D  + +S+
Sbjct: 35  RQYIEALKLYTKSPVYTTRFTYPSLLKACASLSNLQYGKTIHSSIITTGLHSDQYITSSL 94

Query: 192 LDMYSCLMDLDAAIQIFREM-----ECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSR 246
           +++Y        A+++F ++        DV  W  ++  +  F    + +  F  M+ S 
Sbjct: 95  INIYVKCGTFTDAVKVFDQLPKSGVSVDDVTIWNSIIDGYFRFGQLEEGMVQFGRMQSS- 153

Query: 247 IICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSR 306
                                K GKQ+H+ +V   L  +  L  ++I  Y KCG    +R
Sbjct: 154 -------------------GYKEGKQIHSYIVRNMLNFDPFLETALIDTYFKCGRPTEAR 194

Query: 307 SVFNQITEKS-LVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGE 365
            +F ++ ++S +V+W  +I G+ +NG    +L  ++  + E    V S +    L+A G+
Sbjct: 195 YLFKKLKDRSNIVAWNVMIGGFGENGLWENSLEYYLLAKTENVKVVSS-SFTCTLSACGQ 253

Query: 366 LAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNT 425
              +    Q+H  A + GF     V   L++ Y KC  ++ A  VF E+   +++  WN 
Sbjct: 254 GEFVSFGKQVHCDAIKVGFEDDPYVHTSLLTMYGKCQMIESAEKVFNEVPD-KEIELWNA 312

Query: 426 IIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEE 484
           +I  Y  NG+   AL +Y +M     + DS T L++L +   AGL + G +I  ++++ 
Sbjct: 313 LISAYVGNGYAYDALRIYKQMKLCTVLSDSFTILNVLTSSSMAGLYDLGRLIHTEIVKR 371



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 92/180 (51%), Gaps = 22/180 (12%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D + +S LL  Y K G  + A N+F ++P KN+V+W+ +I  Y  N   + S+  FS +
Sbjct: 476 LDVFVASSLLDMYSKFGFPERAGNIFSDMPLKNLVAWNSIISCYCRNNLPDLSINLFSQV 535

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------- 106
           + + L P+S +   VL A + +  L   +S+HG +V+  +  DL                
Sbjct: 536 LRNDLYPDSVSFTSVLAAISSVAALLKGKSVHGYLVRLWIPFDLQVENTLIDMYIKCGLL 595

Query: 107 ------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                 FE +    LV+ N+++ G+ ++    +A+ LF+  R SG+ P+ VT L+++  C
Sbjct: 596 KYAQHIFERISEKNLVAWNSMIGGYGSHGECSKAIELFDEMRSSGIKPDDVTFLSLLSSC 655



 Score = 44.3 bits (103), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 55/131 (41%), Gaps = 8/131 (6%)

Query: 324 ISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG 383
           I   VQ     EAL  + K     T      T  S+L A   L+ L+    +H      G
Sbjct: 28  IKSLVQQRQYIEALKLYTKSPVYTT----RFTYPSLLKACASLSNLQYGKTIHSSIITTG 83

Query: 384 FPRYRSVQNCLISSYSKCGNVDLAYIVFEEMG----FLRDVVSWNTIIYGYGVNGHGETA 439
               + + + LI+ Y KCG    A  VF+++      + DV  WN+II GY   G  E  
Sbjct: 84  LHSDQYITSSLINIYVKCGTFTDAVKVFDQLPKSGVSVDDVTIWNSIIDGYFRFGQLEEG 143

Query: 440 LALYHKMTETG 450
           +  + +M  +G
Sbjct: 144 MVQFGRMQSSG 154


>gi|414867973|tpg|DAA46530.1| TPA: hypothetical protein ZEAMMB73_503614 [Zea mays]
          Length = 923

 Score =  249 bits (636), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 162/545 (29%), Positives = 266/545 (48%), Gaps = 34/545 (6%)

Query: 20  KIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLV 79
           ++++AE LFD + E++ +SW+ +I  YS    + K     S M    + P+  T+  ++ 
Sbjct: 195 RVQDAERLFDRMEERDRISWNAMISMYSHEEVYSKCFIVLSDMRHGEVKPDVTTLCSLVS 254

Query: 80  AAAGLQNLELARSIHGLMVKFGLE----------------------SDLFEGLKNPYLVS 117
             A    + L   IH L V  GL                         LF  +    ++S
Sbjct: 255 VCASSDLVALGSGIHSLCVSSGLHCSVPLINALVNMYSTAGKLDEAESLFRNMSRRDVIS 314

Query: 118 CNAIVAGFI-NNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLT 176
            N +++ ++ +N   +    L    +     PN++T  + +  C +  +      IH + 
Sbjct: 315 WNTMISSYVQSNSCVEALETLGQLLQTDEGPPNSMTFSSALGACSSPEALMNGRTIHAMI 374

Query: 177 IKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDAL 236
           ++  L   + + NS+L MYS    ++   ++F  M C DV+S   + G +   E   +A+
Sbjct: 375 LQRSLQNVLLIGNSLLTMYSKCNSMEDTERVFESMPCYDVVSCNVLTGGYAALEDVANAM 434

Query: 237 KIFREMRKSRIICDTVALLNLISVNAILGDLKR-GKQLHAQVVLGGLQSELRLSNSIIAM 295
           ++F  MR + I  + + ++NL      LGDL   G  LHA V   GL S+  ++NS+I M
Sbjct: 435 RVFSWMRGTGIKPNYITMINLQGTCKSLGDLHSYGMPLHAYVTQTGLLSDEYITNSLITM 494

Query: 296 YSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSIT 355
           Y+ CGDL+SS  +F++I  KS++SW AII+  V++G   EA+  F+   Q   + +D   
Sbjct: 495 YATCGDLESSTGIFSRINNKSVISWNAIIAANVRHGRGEEAIKLFMD-SQHAGNKLDRFC 553

Query: 356 LVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMG 415
           L   L++S  LA+LE  +QLHG++ + G      V N  +  Y KCG +D       +  
Sbjct: 554 LAECLSSSANLASLEEGMQLHGLSVKNGLDCDSHVVNATMDMYGKCGKMDCMLKTLPDPA 613

Query: 416 FLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGL 475
             R    WNT+I GY   G+ + A   +  M   G+ PD  T++++L+AC HAGL + G+
Sbjct: 614 H-RPTQCWNTLISGYARYGYFKEAEDTFKHMVSVGQKPDYVTFVALLSACSHAGLIDKGM 672

Query: 476 VIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMG--PN--IWRALLS 531
             +N M     V P  +H  C+VDLL R G  ++A     K ++ M   PN  IWR+LLS
Sbjct: 673 DYYNSMAPTFGVSPGIKHCVCIVDLLGRLGKFAEAE----KFIDEMPVLPNDLIWRSLLS 728

Query: 532 GCVLH 536
               H
Sbjct: 729 SSRTH 733



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 150/622 (24%), Positives = 274/622 (44%), Gaps = 73/622 (11%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y  + LL  Y   G +  A+ LF E+P++NVVSW+ ++   S NG  E+++ A+  M   
Sbjct: 80  YIGTALLHLYGSRGLVLNAQRLFWEMPQRNVVSWTAIMVALSSNGCMEEALVAYRRMRKE 139

Query: 66  GLLPNSFTMVGVLV-------AAAGLQ------------NLELARSI---HGLMVKFGLE 103
           G++ N+  +  V+          AGLQ            ++ +A S+    G + +    
Sbjct: 140 GVMCNANALATVVSLCGALEDEVAGLQVTAHVVVSGLLTHVSVANSLITMFGNLRRVQDA 199

Query: 104 SDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
             LF+ ++    +S NA+++ + + +++ +  ++ +  R   + P+  T+ +++  C + 
Sbjct: 200 ERLFDRMEERDRISWNAMISMYSHEEVYSKCFIVLSDMRHGEVKPDVTTLCSLVSVCASS 259

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
              AL   IH L +  GL   V + N++++MYS    LD A  +FR M  +DVISW  M+
Sbjct: 260 DLVALGSGIHSLCVSSGLHCSVPLINALVNMYSTAGKLDEAESLFRNMSRRDVISWNTMI 319

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILG------DLKRGKQLHAQV 277
             +V      +AL+   ++ ++          N ++ ++ LG       L  G+ +HA +
Sbjct: 320 SSYVQSNSCVEALETLGQLLQT-----DEGPPNSMTFSSALGACSSPEALMNGRTIHAMI 374

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           +   LQ+ L + NS++ MYSKC  ++ +  VF  +    +VS   +  GY        A+
Sbjct: 375 LQRSLQNVLLIGNSLLTMYSKCNSMEDTERVFESMPCYDVVSCNVLTGGYAALEDVANAM 434

Query: 338 NQFIKMRQE--KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLI 395
             F  MR    K + +  I L     + G+L +    + LH    + G      + N LI
Sbjct: 435 RVFSWMRGTGIKPNYITMINLQGTCKSLGDLHSYG--MPLHAYVTQTGLLSDEYITNSLI 492

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
           + Y+ CG+++ +  +F  +   + V+SWN II     +G GE A+ L+      G   D 
Sbjct: 493 TMYATCGDLESSTGIFSRINN-KSVISWNAIIAANVRHGRGEEAIKLFMDSQHAGNKLDR 551

Query: 456 STYLSILNACGH-----AGLTNDGLVIFNQM-IEENKVKPSQEHYGCVVDLLARAGCLSD 509
                 L++  +      G+   GL + N +  + + V  + + YG    +      L D
Sbjct: 552 FCLAECLSSSANLASLEEGMQLHGLSVKNGLDCDSHVVNATMDMYGKCGKMDCMLKTLPD 611

Query: 510 ASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAE-------------------ALRSGS 550
            +    +         W  L+SG   + G F++AE                   AL S  
Sbjct: 612 PAHRPTQ--------CWNTLISGYARY-GYFKEAEDTFKHMVSVGQKPDYVTFVALLSAC 662

Query: 551 QKKGIIKIPGISFLNSTSRDFG 572
              G+I   G+ + NS +  FG
Sbjct: 663 SHAGLID-KGMDYYNSMAPTFG 683



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 104/370 (28%), Positives = 177/370 (47%), Gaps = 10/370 (2%)

Query: 122 VAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR--ALC-ELIHGLTIK 178
           V+G     L   A  L    R   +  +   + +++  C   G +  A C   IH LT +
Sbjct: 13  VSGCARCGLESTAFTLLRVMRERDVPLSGFALASLVTACEHRGWQEGAACGAAIHALTHR 72

Query: 179 LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKI 238
            GL+ +V +  ++L +Y     +  A ++F EM  ++V+SWT +M          +AL  
Sbjct: 73  AGLMGNVYIGTALLHLYGSRGLVLNAQRLFWEMPQRNVVSWTAIMVALSSNGCMEEALVA 132

Query: 239 FREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSK 298
           +R MRK  ++C+  AL  ++S+   L D   G Q+ A VV+ GL + + ++NS+I M+  
Sbjct: 133 YRRMRKEGVMCNANALATVVSLCGALEDEVAGLQVTAHVVVSGLLTHVSVANSLITMFGN 192

Query: 299 CGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR--QEKTDSVDSITL 356
              +  +  +F+++ E+  +SW A+IS Y       +       MR  + K D     +L
Sbjct: 193 LRRVQDAERLFDRMEERDRISWNAMISMYSHEEVYSKCFIVLSDMRHGEVKPDVTTLCSL 252

Query: 357 VSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGF 416
           VS+  AS +L AL     +H +   +G      + N L++ YS  G +D A  +F  M  
Sbjct: 253 VSV-CASSDLVALGS--GIHSLCVSSGLHCSVPLINALVNMYSTAGKLDEAESLFRNMS- 308

Query: 417 LRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE-VPDSSTYLSILNACGHAGLTNDGL 475
            RDV+SWNT+I  Y  +     AL    ++ +T E  P+S T+ S L AC       +G 
Sbjct: 309 RRDVISWNTMISSYVQSNSCVEALETLGQLLQTDEGPPNSMTFSSALGACSSPEALMNGR 368

Query: 476 VIFNQMIEEN 485
            I   +++ +
Sbjct: 369 TIHAMILQRS 378



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 133/285 (46%), Gaps = 12/285 (4%)

Query: 235 ALKIFREMRKSRIICDTVALLNLISVNAILG---DLKRGKQLHAQVVLGGLQSELRLSNS 291
           A  + R MR+  +     AL +L++     G       G  +HA     GL   + +  +
Sbjct: 25  AFTLLRVMRERDVPLSGFALASLVTACEHRGWQEGAACGAAIHALTHRAGLMGNVYIGTA 84

Query: 292 IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
           ++ +Y   G + +++ +F ++ ++++VSWTAI+     NGC  EAL  + +MR+E     
Sbjct: 85  LLHLYGSRGLVLNAQRLFWEMPQRNVVSWTAIMVALSSNGCMEEALVAYRRMRKEGV-MC 143

Query: 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVF 411
           ++  L ++++  G L      LQ+      +G   + SV N LI+ +     V  A  +F
Sbjct: 144 NANALATVVSLCGALEDEVAGLQVTAHVVVSGLLTHVSVANSLITMFGNLRRVQDAERLF 203

Query: 412 EEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET--GEV-PDSSTYLSILNACGHA 468
           + M   RD +SWN +I  Y    H E     +  +++   GEV PD +T  S+++ C  +
Sbjct: 204 DRMEE-RDRISWNAMISMY---SHEEVYSKCFIVLSDMRHGEVKPDVTTLCSLVSVCASS 259

Query: 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL 513
            L   G  I +  +    +  S      +V++ + AG L +A  L
Sbjct: 260 DLVALGSGIHSLCVSSG-LHCSVPLINALVNMYSTAGKLDEAESL 303



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 82/183 (44%), Gaps = 22/183 (12%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y ++ L++ Y   G ++ +  +F  I  K+V+SW+ +I     +G  E+++K F    
Sbjct: 484 DEYITNSLITMYATCGDLESSTGIFSRINNKSVISWNAIIAANVRHGRGEEAIKLFMDSQ 543

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
            +G   + F +   L ++A L +LE    +HGL VK GL+ D                  
Sbjct: 544 HAGNKLDRFCLAECLSSSANLASLEEGMQLHGLSVKNGLDCDSHVVNATMDMYGKCGKMD 603

Query: 106 -LFEGLKNP--YLVSC-NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
            + + L +P      C N +++G+     F++A   F      G  P+ VT + ++  C 
Sbjct: 604 CMLKTLPDPAHRPTQCWNTLISGYARYGYFKEAEDTFKHMVSVGQKPDYVTFVALLSACS 663

Query: 162 ALG 164
             G
Sbjct: 664 HAG 666


>gi|414867972|tpg|DAA46529.1| TPA: hypothetical protein ZEAMMB73_503614 [Zea mays]
          Length = 993

 Score =  249 bits (635), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 162/545 (29%), Positives = 266/545 (48%), Gaps = 34/545 (6%)

Query: 20  KIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLV 79
           ++++AE LFD + E++ +SW+ +I  YS    + K     S M    + P+  T+  ++ 
Sbjct: 195 RVQDAERLFDRMEERDRISWNAMISMYSHEEVYSKCFIVLSDMRHGEVKPDVTTLCSLVS 254

Query: 80  AAAGLQNLELARSIHGLMVKFGLE----------------------SDLFEGLKNPYLVS 117
             A    + L   IH L V  GL                         LF  +    ++S
Sbjct: 255 VCASSDLVALGSGIHSLCVSSGLHCSVPLINALVNMYSTAGKLDEAESLFRNMSRRDVIS 314

Query: 118 CNAIVAGFI-NNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLT 176
            N +++ ++ +N   +    L    +     PN++T  + +  C +  +      IH + 
Sbjct: 315 WNTMISSYVQSNSCVEALETLGQLLQTDEGPPNSMTFSSALGACSSPEALMNGRTIHAMI 374

Query: 177 IKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDAL 236
           ++  L   + + NS+L MYS    ++   ++F  M C DV+S   + G +   E   +A+
Sbjct: 375 LQRSLQNVLLIGNSLLTMYSKCNSMEDTERVFESMPCYDVVSCNVLTGGYAALEDVANAM 434

Query: 237 KIFREMRKSRIICDTVALLNLISVNAILGDLKR-GKQLHAQVVLGGLQSELRLSNSIIAM 295
           ++F  MR + I  + + ++NL      LGDL   G  LHA V   GL S+  ++NS+I M
Sbjct: 435 RVFSWMRGTGIKPNYITMINLQGTCKSLGDLHSYGMPLHAYVTQTGLLSDEYITNSLITM 494

Query: 296 YSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSIT 355
           Y+ CGDL+SS  +F++I  KS++SW AII+  V++G   EA+  F+   Q   + +D   
Sbjct: 495 YATCGDLESSTGIFSRINNKSVISWNAIIAANVRHGRGEEAIKLFMD-SQHAGNKLDRFC 553

Query: 356 LVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMG 415
           L   L++S  LA+LE  +QLHG++ + G      V N  +  Y KCG +D       +  
Sbjct: 554 LAECLSSSANLASLEEGMQLHGLSVKNGLDCDSHVVNATMDMYGKCGKMDCMLKTLPDPA 613

Query: 416 FLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGL 475
             R    WNT+I GY   G+ + A   +  M   G+ PD  T++++L+AC HAGL + G+
Sbjct: 614 H-RPTQCWNTLISGYARYGYFKEAEDTFKHMVSVGQKPDYVTFVALLSACSHAGLIDKGM 672

Query: 476 VIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMG--PN--IWRALLS 531
             +N M     V P  +H  C+VDLL R G  ++A     K ++ M   PN  IWR+LLS
Sbjct: 673 DYYNSMAPTFGVSPGIKHCVCIVDLLGRLGKFAEAE----KFIDEMPVLPNDLIWRSLLS 728

Query: 532 GCVLH 536
               H
Sbjct: 729 SSRTH 733



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 150/622 (24%), Positives = 274/622 (44%), Gaps = 73/622 (11%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y  + LL  Y   G +  A+ LF E+P++NVVSW+ ++   S NG  E+++ A+  M   
Sbjct: 80  YIGTALLHLYGSRGLVLNAQRLFWEMPQRNVVSWTAIMVALSSNGCMEEALVAYRRMRKE 139

Query: 66  GLLPNSFTMVGVLV-------AAAGLQ------------NLELARSI---HGLMVKFGLE 103
           G++ N+  +  V+          AGLQ            ++ +A S+    G + +    
Sbjct: 140 GVMCNANALATVVSLCGALEDEVAGLQVTAHVVVSGLLTHVSVANSLITMFGNLRRVQDA 199

Query: 104 SDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
             LF+ ++    +S NA+++ + + +++ +  ++ +  R   + P+  T+ +++  C + 
Sbjct: 200 ERLFDRMEERDRISWNAMISMYSHEEVYSKCFIVLSDMRHGEVKPDVTTLCSLVSVCASS 259

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
              AL   IH L +  GL   V + N++++MYS    LD A  +FR M  +DVISW  M+
Sbjct: 260 DLVALGSGIHSLCVSSGLHCSVPLINALVNMYSTAGKLDEAESLFRNMSRRDVISWNTMI 319

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILG------DLKRGKQLHAQV 277
             +V      +AL+   ++ ++          N ++ ++ LG       L  G+ +HA +
Sbjct: 320 SSYVQSNSCVEALETLGQLLQT-----DEGPPNSMTFSSALGACSSPEALMNGRTIHAMI 374

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           +   LQ+ L + NS++ MYSKC  ++ +  VF  +    +VS   +  GY        A+
Sbjct: 375 LQRSLQNVLLIGNSLLTMYSKCNSMEDTERVFESMPCYDVVSCNVLTGGYAALEDVANAM 434

Query: 338 NQFIKMRQE--KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLI 395
             F  MR    K + +  I L     + G+L +    + LH    + G      + N LI
Sbjct: 435 RVFSWMRGTGIKPNYITMINLQGTCKSLGDLHSYG--MPLHAYVTQTGLLSDEYITNSLI 492

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
           + Y+ CG+++ +  +F  +   + V+SWN II     +G GE A+ L+      G   D 
Sbjct: 493 TMYATCGDLESSTGIFSRINN-KSVISWNAIIAANVRHGRGEEAIKLFMDSQHAGNKLDR 551

Query: 456 STYLSILNACGH-----AGLTNDGLVIFNQM-IEENKVKPSQEHYGCVVDLLARAGCLSD 509
                 L++  +      G+   GL + N +  + + V  + + YG    +      L D
Sbjct: 552 FCLAECLSSSANLASLEEGMQLHGLSVKNGLDCDSHVVNATMDMYGKCGKMDCMLKTLPD 611

Query: 510 ASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAE-------------------ALRSGS 550
            +    +         W  L+SG   + G F++AE                   AL S  
Sbjct: 612 PAHRPTQ--------CWNTLISGYARY-GYFKEAEDTFKHMVSVGQKPDYVTFVALLSAC 662

Query: 551 QKKGIIKIPGISFLNSTSRDFG 572
              G+I   G+ + NS +  FG
Sbjct: 663 SHAGLID-KGMDYYNSMAPTFG 683



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 104/370 (28%), Positives = 177/370 (47%), Gaps = 10/370 (2%)

Query: 122 VAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR--ALC-ELIHGLTIK 178
           V+G     L   A  L    R   +  +   + +++  C   G +  A C   IH LT +
Sbjct: 13  VSGCARCGLESTAFTLLRVMRERDVPLSGFALASLVTACEHRGWQEGAACGAAIHALTHR 72

Query: 179 LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKI 238
            GL+ +V +  ++L +Y     +  A ++F EM  ++V+SWT +M          +AL  
Sbjct: 73  AGLMGNVYIGTALLHLYGSRGLVLNAQRLFWEMPQRNVVSWTAIMVALSSNGCMEEALVA 132

Query: 239 FREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSK 298
           +R MRK  ++C+  AL  ++S+   L D   G Q+ A VV+ GL + + ++NS+I M+  
Sbjct: 133 YRRMRKEGVMCNANALATVVSLCGALEDEVAGLQVTAHVVVSGLLTHVSVANSLITMFGN 192

Query: 299 CGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR--QEKTDSVDSITL 356
              +  +  +F+++ E+  +SW A+IS Y       +       MR  + K D     +L
Sbjct: 193 LRRVQDAERLFDRMEERDRISWNAMISMYSHEEVYSKCFIVLSDMRHGEVKPDVTTLCSL 252

Query: 357 VSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGF 416
           VS+  AS +L AL     +H +   +G      + N L++ YS  G +D A  +F  M  
Sbjct: 253 VSV-CASSDLVALGS--GIHSLCVSSGLHCSVPLINALVNMYSTAGKLDEAESLFRNMS- 308

Query: 417 LRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE-VPDSSTYLSILNACGHAGLTNDGL 475
            RDV+SWNT+I  Y  +     AL    ++ +T E  P+S T+ S L AC       +G 
Sbjct: 309 RRDVISWNTMISSYVQSNSCVEALETLGQLLQTDEGPPNSMTFSSALGACSSPEALMNGR 368

Query: 476 VIFNQMIEEN 485
            I   +++ +
Sbjct: 369 TIHAMILQRS 378



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 133/285 (46%), Gaps = 12/285 (4%)

Query: 235 ALKIFREMRKSRIICDTVALLNLISVNAILG---DLKRGKQLHAQVVLGGLQSELRLSNS 291
           A  + R MR+  +     AL +L++     G       G  +HA     GL   + +  +
Sbjct: 25  AFTLLRVMRERDVPLSGFALASLVTACEHRGWQEGAACGAAIHALTHRAGLMGNVYIGTA 84

Query: 292 IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
           ++ +Y   G + +++ +F ++ ++++VSWTAI+     NGC  EAL  + +MR+E     
Sbjct: 85  LLHLYGSRGLVLNAQRLFWEMPQRNVVSWTAIMVALSSNGCMEEALVAYRRMRKEGV-MC 143

Query: 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVF 411
           ++  L ++++  G L      LQ+      +G   + SV N LI+ +     V  A  +F
Sbjct: 144 NANALATVVSLCGALEDEVAGLQVTAHVVVSGLLTHVSVANSLITMFGNLRRVQDAERLF 203

Query: 412 EEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET--GEV-PDSSTYLSILNACGHA 468
           + M   RD +SWN +I  Y    H E     +  +++   GEV PD +T  S+++ C  +
Sbjct: 204 DRMEE-RDRISWNAMISMY---SHEEVYSKCFIVLSDMRHGEVKPDVTTLCSLVSVCASS 259

Query: 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL 513
            L   G  I +  +    +  S      +V++ + AG L +A  L
Sbjct: 260 DLVALGSGIHSLCVSSG-LHCSVPLINALVNMYSTAGKLDEAESL 303



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 82/183 (44%), Gaps = 22/183 (12%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y ++ L++ Y   G ++ +  +F  I  K+V+SW+ +I     +G  E+++K F    
Sbjct: 484 DEYITNSLITMYATCGDLESSTGIFSRINNKSVISWNAIIAANVRHGRGEEAIKLFMDSQ 543

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
            +G   + F +   L ++A L +LE    +HGL VK GL+ D                  
Sbjct: 544 HAGNKLDRFCLAECLSSSANLASLEEGMQLHGLSVKNGLDCDSHVVNATMDMYGKCGKMD 603

Query: 106 -LFEGLKNP--YLVSC-NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
            + + L +P      C N +++G+     F++A   F      G  P+ VT + ++  C 
Sbjct: 604 CMLKTLPDPAHRPTQCWNTLISGYARYGYFKEAEDTFKHMVSVGQKPDYVTFVALLSACS 663

Query: 162 ALG 164
             G
Sbjct: 664 HAG 666


>gi|20146256|dbj|BAB89038.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|125571007|gb|EAZ12522.1| hypothetical protein OsJ_02419 [Oryza sativa Japonica Group]
          Length = 1062

 Score =  249 bits (635), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 165/561 (29%), Positives = 285/561 (50%), Gaps = 37/561 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  S L+S + + G + EA++++  + E+N V+ + +I G       E + + F    
Sbjct: 312 DLYVGSALVSAFARHGMLDEAKDIYLGLKERNAVTLNGLIAGLVKQQHGEAAAEIFMGAR 371

Query: 64  LSGLLPNSFTMVGVLVAAAGL----QNLELARSIHGLMVKFG---LESDLFEGLKNPYL- 115
            S  + N  T V +L A A      Q L   R +H  +++ G    +  +  GL N Y  
Sbjct: 372 DSAAV-NVDTYVVLLSAIAEFSTAEQGLRKGREVHAHVLRAGHIYRKIAVSNGLVNMYAK 430

Query: 116 -------------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTV 156
                              +S N I+     N   + A++ +   R + + P+    ++ 
Sbjct: 431 CGAIDKACRVFQLMEARDRISWNTIITALDQNGYCEAAMMNYCLMRQNSIGPSNFAAISG 490

Query: 157 IRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
           +  C  LG  A  + +H   +K GL LD SV+N+++ MY     +    +IF  M   DV
Sbjct: 491 LSSCAGLGLLAAGQQLHCDAVKWGLYLDTSVSNALVKMYGECGRMSECWEIFNSMSAHDV 550

Query: 217 ISWTRMMGLFVDFEYA-GDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
           +SW  +MG+    +    +++++F  M KS ++ + V  +N ++    L  L+ GKQ+H+
Sbjct: 551 VSWNSIMGVMASSQAPITESVQVFSNMMKSGLVPNKVTFVNFLAALTPLSVLELGKQIHS 610

Query: 276 QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISGYVQNGCAR 334
            ++  G+  +  + N++++ Y+K GD+DS   +F++++  +  +SW ++ISGY+ NG  +
Sbjct: 611 VMLKHGVTEDNAVDNALMSCYAKSGDVDSCERLFSRMSGRRDAISWNSMISGYIYNGHLQ 670

Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
           EA++    M   +   +D  T   +L A   +AALE  +++H     +       V++ L
Sbjct: 671 EAMDCVCLMMHSE-QMMDHCTFSIVLNACASVAALERGMEMHAFGLRSHLESDVVVESAL 729

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           +  YSKCG +D A  VF  M   ++  SWN++I GY  +G G  AL ++ +M E+GE PD
Sbjct: 730 VDMYSKCGRIDYASKVFHSMS-QKNEFSWNSMISGYARHGLGRKALEIFEEMQESGESPD 788

Query: 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLA 514
             T++S+L+AC HAGL   GL  F +++E+  + P  EHY CV+DLL RAG L       
Sbjct: 789 HVTFVSVLSACSHAGLVERGLDYF-ELMEDYGILPRIEHYSCVIDLLGRAGELDKIQEYM 847

Query: 515 GKLLEGMGPN--IWRALLSGC 533
            ++   M PN  IWR +L  C
Sbjct: 848 KRM--PMKPNTLIWRTVLVAC 866



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 149/560 (26%), Positives = 256/560 (45%), Gaps = 58/560 (10%)

Query: 24  AENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSG----LLPNSFTMVGVLV 79
           A+ +FD  P +++++W+ ++  Y+  G    +   F  M        L P   T  G L+
Sbjct: 226 AQRVFDTTPVRDLITWNALMSVYAKRGDAICTFTLFRAMQYDDSGIELRPTEHTF-GSLI 284

Query: 80  AAAGLQN--LELARSIHGLMVKFGLESDLFEG----------------------LKNPYL 115
            A  L +  L L   +   ++K G  SDL+ G                      LK    
Sbjct: 285 TATYLSSCSLGLLDQLFVRVLKSGCSSDLYVGSALVSAFARHGMLDEAKDIYLGLKERNA 344

Query: 116 VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCEL---- 171
           V+ N ++AG +  +  + A  +F   R S  V   V    V+   +A  S A   L    
Sbjct: 345 VTLNGLIAGLVKQQHGEAAAEIFMGARDSAAV--NVDTYVVLLSAIAEFSTAEQGLRKGR 402

Query: 172 -IHGLTIKLGLIL-DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDF 229
            +H   ++ G I   ++V+N +++MY+    +D A ++F+ ME +D ISW  ++      
Sbjct: 403 EVHAHVLRAGHIYRKIAVSNGLVNMYAKCGAIDKACRVFQLMEARDRISWNTIITALDQN 462

Query: 230 EYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLS 289
            Y   A+  +  MR++ I     A ++ +S  A LG L  G+QLH   V  GL  +  +S
Sbjct: 463 GYCEAAMMNYCLMRQNSIGPSNFAAISGLSSCAGLGLLAAGQQLHCDAVKWGLYLDTSVS 522

Query: 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA--REALNQFIKMRQEK 347
           N+++ MY +CG +     +FN ++   +VSW +I+ G + +  A   E++  F  M +  
Sbjct: 523 NALVKMYGECGRMSECWEIFNSMSAHDVVSWNSIM-GVMASSQAPITESVQVFSNMMKSG 581

Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
               + +T V+ L A   L+ LE+  Q+H +  + G     +V N L+S Y+K G+VD  
Sbjct: 582 L-VPNKVTFVNFLAALTPLSVLELGKQIHSVMLKHGVTEDNAVDNALMSCYAKSGDVDSC 640

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
             +F  M   RD +SWN++I GY  NGH + A+     M  + ++ D  T+  +LNAC  
Sbjct: 641 ERLFSRMSGRRDAISWNSMISGYIYNGHLQEAMDCVCLMMHSEQMMDHCTFSIVLNACAS 700

Query: 468 AGLTNDGLVI----FNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
                 G+ +        +E + V  S      +VD+ ++ G +  AS    K+   M  
Sbjct: 701 VAALERGMEMHAFGLRSHLESDVVVES-----ALVDMYSKCGRIDYAS----KVFHSMSQ 751

Query: 524 N---IWRALLSGCVLH-VGR 539
                W +++SG   H +GR
Sbjct: 752 KNEFSWNSMISGYARHGLGR 771



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 145/589 (24%), Positives = 266/589 (45%), Gaps = 64/589 (10%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + ++ L+++Y K  ++  A  +FD +P +N VSW+ +I G+ ++G  E +   F  M+
Sbjct: 99  DLFLANHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHVLSGLPEDAFPLFRAML 158

Query: 64  LS--GLLPNSFTMVGVLVAA--AGLQNLELARSIHGLMVKFGLESD-------------- 105
               G  P SFT   VL A   +G   L  A  +HGL+ K    S+              
Sbjct: 159 REGPGCRPTSFTFGSVLRACQDSGPDRLGFAVQVHGLVSKTEFTSNTTVCNALISMYGSC 218

Query: 106 ----------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFR-------GSGLVP 148
                     +F+      L++ NA+++ +        A+  F  FR       G  L P
Sbjct: 219 SVGPPILAQRVFDTTPVRDLITWNALMSVYAKRG---DAICTFTLFRAMQYDDSGIELRP 275

Query: 149 NAVTMLTVIRGC-VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQI 207
              T  ++I    ++  S  L + +    +K G   D+ V ++++  ++    LD A  I
Sbjct: 276 TEHTFGSLITATYLSSCSLGLLDQLFVRVLKSGCSSDLYVGSALVSAFARHGMLDEAKDI 335

Query: 208 FREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRII-CDT-VALLNLIS-VNAIL 264
           +  ++ ++ ++   ++   V  ++   A +IF   R S  +  DT V LL+ I+  +   
Sbjct: 336 YLGLKERNAVTLNGLIAGLVKQQHGEAAAEIFMGARDSAAVNVDTYVVLLSAIAEFSTAE 395

Query: 265 GDLKRGKQLHAQVVLGG-LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAI 323
             L++G+++HA V+  G +  ++ +SN ++ MY+KCG +D +  VF  +  +  +SW  I
Sbjct: 396 QGLRKGREVHAHVLRAGHIYRKIAVSNGLVNMYAKCGAIDKACRVFQLMEARDRISWNTI 455

Query: 324 ISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG 383
           I+   QNG    A+  +  MRQ       +   +S L++   L  L    QLH  A + G
Sbjct: 456 ITALDQNGYCEAAMMNYCLMRQNSIGP-SNFAAISGLSSCAGLGLLAAGQQLHCDAVKWG 514

Query: 384 FPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALA-- 441
                SV N L+  Y +CG +   + +F  M    DVVSWN+I+   GV    +  +   
Sbjct: 515 LYLDTSVSNALVKMYGECGRMSECWEIFNSMS-AHDVVSWNSIM---GVMASSQAPITES 570

Query: 442 --LYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMI-----EENKVKPSQEHY 494
             ++  M ++G VP+  T+++ L A     +   G  I + M+     E+N V       
Sbjct: 571 VQVFSNMMKSGLVPNKVTFVNFLAALTPLSVLELGKQIHSVMLKHGVTEDNAVD------ 624

Query: 495 GCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDA 543
             ++   A++G +     L  ++        W +++SG + + G  Q+A
Sbjct: 625 NALMSCYAKSGDVDSCERLFSRMSGRRDAISWNSMISGYIYN-GHLQEA 672



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 99/203 (48%), Gaps = 10/203 (4%)

Query: 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
           + LH +VV  GL  +L L+N ++  Y+K   LD++R VF+ +  ++ VSWT +ISG+V +
Sbjct: 85  ESLHLEVVKRGLTHDLFLANHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHVLS 144

Query: 331 GCAREALNQFIKMRQEKTD-SVDSITLVSILTASGELAA--LEICLQLHGIAFEAGFPRY 387
           G   +A   F  M +E       S T  S+L A  +     L   +Q+HG+  +  F   
Sbjct: 145 GLPEDAFPLFRAMLREGPGCRPTSFTFGSVLRACQDSGPDRLGFAVQVHGLVSKTEFTSN 204

Query: 388 RSVQNCLISSYSKC--GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHK 445
            +V N LIS Y  C  G   LA  VF+    +RD+++WN ++  Y   G       L+  
Sbjct: 205 TTVCNALISMYGSCSVGPPILAQRVFDTTP-VRDLITWNALMSVYAKRGDAICTFTLFRA 263

Query: 446 MTETGE----VPDSSTYLSILNA 464
           M          P   T+ S++ A
Sbjct: 264 MQYDDSGIELRPTEHTFGSLITA 286



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 147/325 (45%), Gaps = 18/325 (5%)

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
           G  A  E +H   +K GL  D+ + N +++ Y+    LDAA ++F  M  ++ +SWT ++
Sbjct: 79  GCDASPESLHLEVVKRGLTHDLFLANHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLI 138

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALL--NLISVNAILGDLKRG--KQLHAQVVL 279
              V      DA  +FR M +    C   +    +++      G  + G   Q+H  V  
Sbjct: 139 SGHVLSGLPEDAFPLFRAMLREGPGCRPTSFTFGSVLRACQDSGPDRLGFAVQVHGLVSK 198

Query: 280 GGLQSELRLSNSIIAMYSKC--GDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
               S   + N++I+MY  C  G    ++ VF+    + L++W A++S Y + G A    
Sbjct: 199 TEFTSNTTVCNALISMYGSCSVGPPILAQRVFDTTPVRDLITWNALMSVYAKRGDAICTF 258

Query: 338 NQFIKMRQEKTD---SVDSITLVSILTASG-ELAALEICLQLHGIAFEAGFPRYRSVQNC 393
             F  M+ + +         T  S++TA+     +L +  QL     ++G      V + 
Sbjct: 259 TLFRAMQYDDSGIELRPTEHTFGSLITATYLSSCSLGLLDQLFVRVLKSGCSSDLYVGSA 318

Query: 394 LISSYSKCGNVDLA---YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
           L+S++++ G +D A   Y+  +E    R+ V+ N +I G     HGE A  ++    ++ 
Sbjct: 319 LVSAFARHGMLDEAKDIYLGLKE----RNAVTLNGLIAGLVKQQHGEAAAEIFMGARDSA 374

Query: 451 EVPDSSTYLSILNACGHAGLTNDGL 475
            V +  TY+ +L+A         GL
Sbjct: 375 AV-NVDTYVVLLSAIAEFSTAEQGL 398


>gi|326490736|dbj|BAJ90035.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326511421|dbj|BAJ87724.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 801

 Score =  249 bits (635), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 172/549 (31%), Positives = 286/549 (52%), Gaps = 40/549 (7%)

Query: 17  KSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVG 76
           + G +     LFD +P+KNVVSW+ +   Y   G  +++++ F+ M+  G+ P   + V 
Sbjct: 154 RRGGVDVVRRLFDAMPKKNVVSWNTLFGWYVKTGRPDEALEMFARMLEDGVRPTPVSFVN 213

Query: 77  VLVAAAGLQNLELARSIHGLMVKFGLE--SDLF------------------------EGL 110
           V   AAG  +      ++GL++K G+E  +DLF                         G 
Sbjct: 214 VF-PAAGSGDPSWPFLLYGLLIKHGVEYVNDLFVVSSAIGMFSEISDVQSARMVFDRAGK 272

Query: 111 KNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVP-NAVTMLTVIRGCVALGSRALC 169
           KN  +   N ++ G++ N  F QA+ LF    GS  VP + VT L+ +          L 
Sbjct: 273 KN--IEVWNTMITGYVQNGQFSQAMDLFIQILGSKEVPSDVVTFLSAVTAASQSQDVRLG 330

Query: 170 ELIHGLTIK-LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
           + +HG  +K +   L V + N+++ MYS   ++  A ++F  +  KD++SW  M+  FV 
Sbjct: 331 QQLHGYLMKGMHSTLPVILGNALVVMYSRCGNVQTAFELFDRLPEKDIVSWNTMITAFVQ 390

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
            ++  + L +  +M+KS  I DTV L  ++S  +  GDL+ GKQ H  ++  G++ E  L
Sbjct: 391 NDFDLEGLLLVYQMQKSGFIPDTVTLTAVLSAASNTGDLQIGKQSHGYLIRHGIEGE-GL 449

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQI-TEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
            + +I MYSK G +D ++ VF+    ++  V+W A+I+GY Q+G   +A+ QF  M +  
Sbjct: 450 ESYLIDMYSKSGRIDMAQRVFDGYGNDRDEVTWNAMIAGYTQSGQPEQAVLQFRAMIEAG 509

Query: 348 TDSVDSITLVSILTASGELAALEICL--QLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
            +   S+TL S+L A   +    +C   Q+H  A          V   L+  YSKCG + 
Sbjct: 510 VEPT-SVTLASVLPACDPVGG-GVCAGKQIHSFALRHSLDTNVFVGTALVDMYSKCGEIS 567

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            A  VF  M   +  V++ T+I G G +G GE AL+L++ M + G  PD+ T+L+ ++AC
Sbjct: 568 AAENVFGGMT-EKSTVTYTTMISGLGQHGFGERALSLFYSMRDKGLKPDAVTFLAAISAC 626

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE-GMGPN 524
            ++GL ++GL ++  M E   +  + +H+ C+VDLLA+AG + +A      L E G    
Sbjct: 627 NYSGLVDEGLSLYRSM-ETFGLAATPQHHCCIVDLLAKAGRVDEAYDFVESLGEDGNFIA 685

Query: 525 IWRALLSGC 533
           IW +LL+ C
Sbjct: 686 IWGSLLASC 694



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 120/477 (25%), Positives = 224/477 (46%), Gaps = 43/477 (9%)

Query: 21  IKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNS-FTMVGVLV 79
           ++ A  +FD   +KN+  W+ +I GY  NG   ++M  F  ++ S  +P+   T +  + 
Sbjct: 260 VQSARMVFDRAGKKNIEVWNTMITGYVQNGQFSQAMDLFIQILGSKEVPSDVVTFLSAVT 319

Query: 80  AAAGLQNLELARSIHGLMVKFGLES------------------------DLFEGLKNPYL 115
           AA+  Q++ L + +HG ++K G+ S                        +LF+ L    +
Sbjct: 320 AASQSQDVRLGQQLHGYLMK-GMHSTLPVILGNALVVMYSRCGNVQTAFELFDRLPEKDI 378

Query: 116 VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGL 175
           VS N ++  F+ N    + +LL    + SG +P+ VT+  V+      G   + +  HG 
Sbjct: 379 VSWNTMITAFVQNDFDLEGLLLVYQMQKSGFIPDTVTLTAVLSAASNTGDLQIGKQSHGY 438

Query: 176 TIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM-ECKDVISWTRMMGLFVDFEYAGD 234
            I+ G I    + + ++DMYS    +D A ++F      +D ++W  M+  +        
Sbjct: 439 LIRHG-IEGEGLESYLIDMYSKSGRIDMAQRVFDGYGNDRDEVTWNAMIAGYTQSGQPEQ 497

Query: 235 ALKIFREMRKSRIICDTVALLNLISV-NAILGDLKRGKQLHAQVVLGGLQSELRLSNSII 293
           A+  FR M ++ +   +V L +++   + + G +  GKQ+H+  +   L + + +  +++
Sbjct: 498 AVLQFRAMIEAGVEPTSVTLASVLPACDPVGGGVCAGKQIHSFALRHSLDTNVFVGTALV 557

Query: 294 AMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDS 353
            MYSKCG++ ++ +VF  +TEKS V++T +ISG  Q+G    AL+ F  MR +K    D+
Sbjct: 558 DMYSKCGEISAAENVFGGMTEKSTVTYTTMISGLGQHGFGERALSLFYSMR-DKGLKPDA 616

Query: 354 ITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEE 413
           +T ++ ++A      ++  L L+      G         C++   +K G VD AY   E 
Sbjct: 617 VTFLAAISACNYSGLVDEGLSLYRSMETFGLAATPQHHCCIVDLLAKAGRVDEAYDFVES 676

Query: 414 MGFLRDVVS-WNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAG 469
           +G   + ++ W +++      G  E A     K+            L+I    GHAG
Sbjct: 677 LGEDGNFIAIWGSLLASCKAQGKMELAAWATEKV------------LNIEKQYGHAG 721



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 100/405 (24%), Positives = 189/405 (46%), Gaps = 33/405 (8%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+  Y + G ++ A  LFD +PEK++VSW+ +I  +  N F  + +     M  SG +P+
Sbjct: 353 LVVMYSRCGNVQTAFELFDRLPEKDIVSWNTMITAFVQNDFDLEGLLLVYQMQKSGFIPD 412

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------LFEG 109
           + T+  VL AA+   +L++ +  HG +++ G+E +                     +F+G
Sbjct: 413 TVTLTAVLSAASNTGDLQIGKQSHGYLIRHGIEGEGLESYLIDMYSKSGRIDMAQRVFDG 472

Query: 110 LKNPY-LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
             N    V+ NA++AG+  +   +QAVL F     +G+ P +VT+ +V+  C  +G   +
Sbjct: 473 YGNDRDEVTWNAMIAGYTQSGQPEQAVLQFRAMIEAGVEPTSVTLASVLPACDPVGG-GV 531

Query: 169 C--ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
           C  + IH   ++  L  +V V  +++DMYS   ++ AA  +F  M  K  +++T M+   
Sbjct: 532 CAGKQIHSFALRHSLDTNVFVGTALVDMYSKCGEISAAENVFGGMTEKSTVTYTTMISGL 591

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
               +   AL +F  MR   +  D V  L  IS     G +  G  L+  +   GL +  
Sbjct: 592 GQHGFGERALSLFYSMRDKGLKPDAVTFLAAISACNYSGLVDEGLSLYRSMETFGLAATP 651

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKS--LVSWTAIISGYVQNG---CAREALNQFI 341
           +    I+ + +K G +D +      + E    +  W ++++     G    A  A  + +
Sbjct: 652 QHHCCIVDLLAKAGRVDEAYDFVESLGEDGNFIAIWGSLLASCKAQGKMELAAWATEKVL 711

Query: 342 KMRQEKTDSVDSITLVSILTASGELA---ALEICLQLHGIAFEAG 383
            + ++   +  ++ L  +  A G  +   +L   ++L G+  EAG
Sbjct: 712 NIEKQYGHAGYNVLLSQLFAAEGNWSSADSLRKEMRLRGLRKEAG 756


>gi|255568940|ref|XP_002525440.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223535253|gb|EEF36930.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 878

 Score =  249 bits (635), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 153/505 (30%), Positives = 260/505 (51%), Gaps = 24/505 (4%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           ++ Y  + L++ Y + G    A+ +F +I  K+ VS++ +I G S  G  +++++ F  M
Sbjct: 323 LETYVCNALVTLYSRLGNFISAQQVFSKIKCKDEVSYNSLISGLSQQGCSDRALELFKKM 382

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF-EGLKNPYLVSCNAI 121
            L  L P+  T+  +L A A +++L     +H   +K G+  D+  EG      V C+ I
Sbjct: 383 QLDHLKPDCVTVASLLSACASIKSLSKGEQLHSYAIKAGMCLDIIIEGSLLDLYVKCSDI 442

Query: 122 VAG--FINNKLFQQAVLL----------------FNFFRG---SGLVPNAVTMLTVIRGC 160
                F      +  VL                 F  FR     GL+PN  T  +++R C
Sbjct: 443 TTAHKFFATTQTENVVLWNVMLVAYGQLDNLSKSFCIFRQMQIEGLIPNQFTYPSILRTC 502

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
            + G+  L E IH   IK G   +V V + ++DMY+ L  LD A  I R +  +DV+SWT
Sbjct: 503 TSFGALDLGEQIHSQAIKTGFEFNVYVCSVLIDMYAKLGKLDIARGILRRLNEEDVVSWT 562

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++  +   +   +AL +F EM    I  D +   + IS  A +  L +G+Q+HAQ  + 
Sbjct: 563 ALIAGYTQHDLFTEALNLFDEMLNRGIQSDNIGFSSAISACAGIQALSQGQQIHAQSYIS 622

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           G   +L + N+++++Y++CG +  +   F +I  K  +SW A++SG+ Q+G   EAL  F
Sbjct: 623 GYSEDLSIGNALVSLYARCGRIQEANLAFEKIDAKDSISWNALMSGFAQSGYCEEALKIF 682

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            +M +    +    T  S ++A+  +A ++   Q+H +  + GF     V N LI+ Y+K
Sbjct: 683 AQMTRANIKA-SLFTFGSAVSAAANMANIKQGKQIHAMIMKTGFDSEIEVSNALITLYAK 741

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CG +D A   F E+   ++ +SWN +I GY  +G G  A+ L+ KM + G  P+  T++ 
Sbjct: 742 CGCIDGAKREFFEIP-EKNEISWNAMITGYSQHGCGIEAVNLFQKMKQVGAKPNHVTFVG 800

Query: 461 ILNACGHAGLTNDGLVIFNQMIEEN 485
           +++AC H GL N+GL  F  M +E+
Sbjct: 801 VISACSHVGLVNEGLAYFESMSKEH 825



 Score =  238 bits (607), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 154/548 (28%), Positives = 276/548 (50%), Gaps = 26/548 (4%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+  Y K+G I+ A  +FDE+  K+ VSW  VI  YS NGF E++++ F  M +SGL P 
Sbjct: 230 LIDLYAKNGFIRSARKVFDELCMKDSVSWVAVISSYSQNGFGEEAIRLFCEMHISGLSPT 289

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVK--FGLES--------------------DLFE 108
            +    VL A A ++  ++   +H L+ K  F LE+                     +F 
Sbjct: 290 PYVFSSVLSACAKIELFDIGEQLHALVFKCGFFLETYVCNALVTLYSRLGNFISAQQVFS 349

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            +K    VS N++++G        +A+ LF   +   L P+ VT+ +++  C ++ S + 
Sbjct: 350 KIKCKDEVSYNSLISGLSQQGCSDRALELFKKMQLDHLKPDCVTVASLLSACASIKSLSK 409

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
            E +H   IK G+ LD+ +  S+LD+Y    D+  A + F   + ++V+ W  M+  +  
Sbjct: 410 GEQLHSYAIKAGMCLDIIIEGSLLDLYVKCSDITTAHKFFATTQTENVVLWNVMLVAYGQ 469

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
            +    +  IFR+M+   +I +     +++      G L  G+Q+H+Q +  G +  + +
Sbjct: 470 LDNLSKSFCIFRQMQIEGLIPNQFTYPSILRTCTSFGALDLGEQIHSQAIKTGFEFNVYV 529

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
            + +I MY+K G LD +R +  ++ E+ +VSWTA+I+GY Q+    EALN F +M     
Sbjct: 530 CSVLIDMYAKLGKLDIARGILRRLNEEDVVSWTALIAGYTQHDLFTEALNLFDEMLNRGI 589

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
            S D+I   S ++A   + AL    Q+H  ++ +G+    S+ N L+S Y++CG +  A 
Sbjct: 590 QS-DNIGFSSAISACAGIQALSQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRIQEAN 648

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
           + FE++   +D +SWN ++ G+  +G+ E AL ++ +MT         T+ S ++A  + 
Sbjct: 649 LAFEKID-AKDSISWNALMSGFAQSGYCEEALKIFAQMTRANIKASLFTFGSAVSAAANM 707

Query: 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRA 528
                G  I + MI +       E    ++ L A+ GC+  A     ++ E    + W A
Sbjct: 708 ANIKQGKQI-HAMIMKTGFDSEIEVSNALITLYAKCGCIDGAKREFFEIPEKNEIS-WNA 765

Query: 529 LLSGCVLH 536
           +++G   H
Sbjct: 766 MITGYSQH 773



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 112/383 (29%), Positives = 190/383 (49%), Gaps = 23/383 (6%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C+D      LL  Y K   I  A   F     +NVV W++++  Y       KS   F  
Sbjct: 423 CLDIIIEGSLLDLYVKCSDITTAHKFFATTQTENVVLWNVMLVAYGQLDNLSKSFCIFRQ 482

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF-------------- 107
           M + GL+PN FT   +L        L+L   IH   +K G E +++              
Sbjct: 483 MQIEGLIPNQFTYPSILRTCTSFGALDLGEQIHSQAIKTGFEFNVYVCSVLIDMYAKLGK 542

Query: 108 --------EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                     L    +VS  A++AG+  + LF +A+ LF+     G+  + +   + I  
Sbjct: 543 LDIARGILRRLNEEDVVSWTALIAGYTQHDLFTEALNLFDEMLNRGIQSDNIGFSSAISA 602

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C  + + +  + IH  +   G   D+S+ N+++ +Y+    +  A   F +++ KD ISW
Sbjct: 603 CAGIQALSQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRIQEANLAFEKIDAKDSISW 662

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
             +M  F    Y  +ALKIF +M ++ I        + +S  A + ++K+GKQ+HA ++ 
Sbjct: 663 NALMSGFAQSGYCEEALKIFAQMTRANIKASLFTFGSAVSAAANMANIKQGKQIHAMIMK 722

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G  SE+ +SN++I +Y+KCG +D ++  F +I EK+ +SW A+I+GY Q+GC  EA+N 
Sbjct: 723 TGFDSEIEVSNALITLYAKCGCIDGAKREFFEIPEKNEISWNAMITGYSQHGCGIEAVNL 782

Query: 340 FIKMRQEKTDSVDSITLVSILTA 362
           F KM+Q      + +T V +++A
Sbjct: 783 FQKMKQVGAKP-NHVTFVGVISA 804



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 140/551 (25%), Positives = 258/551 (46%), Gaps = 37/551 (6%)

Query: 10  KLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLP 69
           KL+  YF  G +     +FD++P +++++W+ V+ G   N    + +  F+ M+   + P
Sbjct: 127 KLIEFYFAVGDLNSVVKVFDDMPSRSLMTWNKVLSGLVANKTSNRVLGLFAQMVEENVNP 186

Query: 70  NSFTMVGVLVA-AAGLQNLELARSIHGLMVKFGLES---------DLFEGLKNPYL---- 115
           N  T+  VL A  +G         IH  ++  GL +         DL+   KN ++    
Sbjct: 187 NEVTVASVLRAYGSGNVAFYYVEQIHASIISRGLGTSSIACNPLIDLYA--KNGFIRSAR 244

Query: 116 -----------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
                      VS  A+++ +  N   ++A+ LF     SGL P      +V+  C  + 
Sbjct: 245 KVFDELCMKDSVSWVAVISSYSQNGFGEEAIRLFCEMHISGLSPTPYVFSSVLSACAKIE 304

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
              + E +H L  K G  L+  V N+++ +YS L +  +A Q+F +++CKD +S+  ++ 
Sbjct: 305 LFDIGEQLHALVFKCGFFLETYVCNALVTLYSRLGNFISAQQVFSKIKCKDEVSYNSLIS 364

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
                  +  AL++F++M+   +  D V + +L+S  A +  L +G+QLH+  +  G+  
Sbjct: 365 GLSQQGCSDRALELFKKMQLDHLKPDCVTVASLLSACASIKSLSKGEQLHSYAIKAGMCL 424

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           ++ +  S++ +Y KC D+ ++   F     +++V W  ++  Y Q     ++   F +M+
Sbjct: 425 DIIIEGSLLDLYVKCSDITTAHKFFATTQTENVVLWNVMLVAYGQLDNLSKSFCIFRQMQ 484

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
            E     +  T  SIL       AL++  Q+H  A + GF     V + LI  Y+K G +
Sbjct: 485 IEGLIP-NQFTYPSILRTCTSFGALDLGEQIHSQAIKTGFEFNVYVCSVLIDMYAKLGKL 543

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           D+A  +   +    DVVSW  +I GY  +     AL L+ +M   G   D+  + S ++A
Sbjct: 544 DIARGILRRLN-EEDVVSWTALIAGYTQHDLFTEALNLFDEMLNRGIQSDNIGFSSAISA 602

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYG---CVVDLLARAGCLSDASGLAGKLLEGM 521
           C      + G     Q+  ++ +    E       +V L AR G + +A+ LA + ++  
Sbjct: 603 CAGIQALSQG----QQIHAQSYISGYSEDLSIGNALVSLYARCGRIQEAN-LAFEKIDAK 657

Query: 522 GPNIWRALLSG 532
               W AL+SG
Sbjct: 658 DSISWNALMSG 668



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 124/437 (28%), Positives = 216/437 (49%), Gaps = 15/437 (3%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F+ + +  L++ N +++G + NK   + + LF       + PN VT+ +V+R   A GS
Sbjct: 144 VFDDMPSRSLMTWNKVLSGLVANKTSNRVLGLFAQMVEENVNPNEVTVASVLR---AYGS 200

Query: 166 RALC----ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
             +     E IH   I  GL       N ++D+Y+    + +A ++F E+  KD +SW  
Sbjct: 201 GNVAFYYVEQIHASIISRGLGTSSIACNPLIDLYAKNGFIRSARKVFDELCMKDSVSWVA 260

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++  +    +  +A+++F EM  S +        +++S  A +     G+QLHA V   G
Sbjct: 261 VISSYSQNGFGEEAIRLFCEMHISGLSPTPYVFSSVLSACAKIELFDIGEQLHALVFKCG 320

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
              E  + N+++ +YS+ G+  S++ VF++I  K  VS+ ++ISG  Q GC+  AL  F 
Sbjct: 321 FFLETYVCNALVTLYSRLGNFISAQQVFSKIKCKDEVSYNSLISGLSQQGCSDRALELFK 380

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           KM+ +     D +T+ S+L+A   + +L    QLH  A +AG      ++  L+  Y KC
Sbjct: 381 KMQLDHLKP-DCVTVASLLSACASIKSLSKGEQLHSYAIKAGMCLDIIIEGSLLDLYVKC 439

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
            ++  A+  F       +VV WN ++  YG   +   +  ++ +M   G +P+  TY SI
Sbjct: 440 SDITTAHKFFATTQ-TENVVLWNVMLVAYGQLDNLSKSFCIFRQMQIEGLIPNQFTYPSI 498

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGC--VVDLLARAGCLSDASGLAGKLLE 519
           L  C   G  + G  I +Q I   K       Y C  ++D+ A+ G L  A G+  +L E
Sbjct: 499 LRTCTSFGALDLGEQIHSQAI---KTGFEFNVYVCSVLIDMYAKLGKLDIARGILRRLNE 555

Query: 520 GMGPNIWRALLSGCVLH 536
               + W AL++G   H
Sbjct: 556 EDVVS-WTALIAGYTQH 571



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 90/322 (27%), Positives = 164/322 (50%), Gaps = 15/322 (4%)

Query: 152 TMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM 211
           T L ++  C+   S   C+ +H   +K+G   +  + + +++ Y  + DL++ +++F +M
Sbjct: 89  TYLWLLDFCLNSASFLDCKKLHSKILKIGFDKESVLCDKLIEFYFAVGDLNSVVKVFDDM 148

Query: 212 ECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG- 270
             + +++W +++   V  + +   L +F +M +  +        N ++V ++L     G 
Sbjct: 149 PSRSLMTWNKVLSGLVANKTSNRVLGLFAQMVEENVN------PNEVTVASVLRAYGSGN 202

Query: 271 ------KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAII 324
                 +Q+HA ++  GL +     N +I +Y+K G + S+R VF+++  K  VSW A+I
Sbjct: 203 VAFYYVEQIHASIISRGLGTSSIACNPLIDLYAKNGFIRSARKVFDELCMKDSVSWVAVI 262

Query: 325 SGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGF 384
           S Y QNG   EA+  F +M          +   S+L+A  ++   +I  QLH + F+ GF
Sbjct: 263 SSYSQNGFGEEAIRLFCEMHISGLSPTPYV-FSSVLSACAKIELFDIGEQLHALVFKCGF 321

Query: 385 PRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH 444
                V N L++ YS+ GN   A  VF ++   +D VS+N++I G    G  + AL L+ 
Sbjct: 322 FLETYVCNALVTLYSRLGNFISAQQVFSKIK-CKDEVSYNSLISGLSQQGCSDRALELFK 380

Query: 445 KMTETGEVPDSSTYLSILNACG 466
           KM      PD  T  S+L+AC 
Sbjct: 381 KMQLDHLKPDCVTVASLLSACA 402



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 104/205 (50%), Gaps = 3/205 (1%)

Query: 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
           K+LH++++  G   E  L + +I  Y   GDL+S   VF+ +  +SL++W  ++SG V N
Sbjct: 107 KKLHSKILKIGFDKESVLCDKLIEFYFAVGDLNSVVKVFDDMPSRSLMTWNKVLSGLVAN 166

Query: 331 GCAREALNQFIKMRQEKTDSVDSITLVSILTASGE-LAALEICLQLHGIAFEAGFPRYRS 389
             +   L  F +M +E  +  + +T+ S+L A G    A     Q+H      G      
Sbjct: 167 KTSNRVLGLFAQMVEENVNP-NEVTVASVLRAYGSGNVAFYYVEQIHASIISRGLGTSSI 225

Query: 390 VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
             N LI  Y+K G +  A  VF+E+  ++D VSW  +I  Y  NG GE A+ L+ +M  +
Sbjct: 226 ACNPLIDLYAKNGFIRSARKVFDELC-MKDSVSWVAVISSYSQNGFGEEAIRLFCEMHIS 284

Query: 450 GEVPDSSTYLSILNACGHAGLTNDG 474
           G  P    + S+L+AC    L + G
Sbjct: 285 GLSPTPYVFSSVLSACAKIELFDIG 309



 Score = 47.4 bits (111), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 1/127 (0%)

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           F+ +  E+     S T + +L      A+   C +LH    + GF +   + + LI  Y 
Sbjct: 74  FLHVVDERGSRAKSQTYLWLLDFCLNSASFLDCKKLHSKILKIGFDKESVLCDKLIEFYF 133

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
             G+++    VF++M   R +++WN ++ G   N      L L+ +M E    P+  T  
Sbjct: 134 AVGDLNSVVKVFDDMP-SRSLMTWNKVLSGLVANKTSNRVLGLFAQMVEENVNPNEVTVA 192

Query: 460 SILNACG 466
           S+L A G
Sbjct: 193 SVLRAYG 199


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  249 bits (635), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 160/530 (30%), Positives = 264/530 (49%), Gaps = 64/530 (12%)

Query: 45  GYSINGFHEKSMKAFSHMMLSGLLPNSFT---MVGVLVAAAGLQNLELARSIHGLMVKFG 101
            Y   G H ++ + F  M      PN FT   ++  L  A  L ++E             
Sbjct: 50  AYGKAGRHARARRVFDAMPH----PNLFTYNALLSTLAHARLLSDMEA------------ 93

Query: 102 LESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFF--RGSGLVPNAVTMLTVIRG 159
               LF  +    +VS NA++AGF       QAV ++       S + P+ +TM T++  
Sbjct: 94  ----LFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMVMA 149

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYS----------------------- 196
             ALG RAL +  H   ++LG   +  V + ++DMY+                       
Sbjct: 150 ASALGDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMY 209

Query: 197 ---------CLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRI 247
                    C M ++ A ++F  M  +D I+WT M+  F       +AL+IFR MR   I
Sbjct: 210 NTMITGLLRCKM-VEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGI 268

Query: 248 ICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRS 307
             D     ++++    L  L++GKQ+HA ++       + + ++++ MYSKC  +  + +
Sbjct: 269 AIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAET 328

Query: 308 VFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELA 367
           VF ++T K+++SWTA+I GY QNGC+ EA+  F +M+++  D  D  TL S++++   LA
Sbjct: 329 VFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDP-DDYTLGSVISSCANLA 387

Query: 368 ALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
           +LE   Q H +A  +G   Y +V N L++ Y KCG+++ A+ +F+EM F  D VSW  ++
Sbjct: 388 SLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSF-HDQVSWTALV 446

Query: 428 YGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKV 487
            GY   G  +  + L+ KM   G  PD  T++ +L+AC  AG    G   F+ M +++ +
Sbjct: 447 SGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDHGI 506

Query: 488 KPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI--WRALLSGCVL 535
            P  +HY C++DL +R+G L +A     ++   M P+   W  LLS C L
Sbjct: 507 VPIDDHYTCMIDLYSRSGKLKEAEEFIKQM--PMHPDAIGWGTLLSACRL 554



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 120/493 (24%), Positives = 229/493 (46%), Gaps = 59/493 (11%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P +  YN+  LLS    +  + + E LF  + ++++VS++ VI G+S  G H ++++ + 
Sbjct: 70  PNLFTYNA--LLSTLAHARLLSDMEALFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYL 127

Query: 61  HMML--SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------- 105
            ++   S + P+  TM  +++AA+ L +  L +  H  +++ G  ++             
Sbjct: 128 ALLQADSSVRPSRITMSTMVMAASALGDRALGKQFHCQILRLGFGANAFVGSPLVDMYAK 187

Query: 106 ----------------------------------------LFEGLKNPYLVSCNAIVAGF 125
                                                   LFE + +   ++   +V GF
Sbjct: 188 MSLVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGF 247

Query: 126 INNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDV 185
             N L  +A+ +F   R  G+  +  T  +++  C AL +    + IH   I+     +V
Sbjct: 248 TQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNV 307

Query: 186 SVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKS 245
            V ++++DMYS    +  A  +FR M CK++ISWT ++  +     + +A+++F EM++ 
Sbjct: 308 FVGSALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRD 367

Query: 246 RIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSS 305
            I  D   L ++IS  A L  L+ G Q H   ++ GL   + +SN+++ +Y KCG ++ +
Sbjct: 368 GIDPDDYTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDA 427

Query: 306 RSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGE 365
             +F++++    VSWTA++SGY Q G A+E ++ F KM  +     D +T + +L+A   
Sbjct: 428 HRLFDEMSFHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKP-DGVTFIGVLSACSR 486

Query: 366 LAALEICLQ-LHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWN 424
              +E      H +  + G         C+I  YS+ G +  A    ++M    D + W 
Sbjct: 487 AGFVEKGRSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWG 546

Query: 425 TIIYGYGVNGHGE 437
           T++    + G  E
Sbjct: 547 TLLSACRLRGDME 559


>gi|92429671|gb|ABE77204.1| unknown [Sorghum bicolor]
          Length = 795

 Score =  249 bits (635), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 167/616 (27%), Positives = 297/616 (48%), Gaps = 58/616 (9%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+ ++  +G++ EA + F  +        +++I G++       ++ A+  M+ +G  P+
Sbjct: 60  LILSHVAAGRMDEAADAFAGVTRPGAFLHNVMIRGFADADLPLDALAAYRAMLDAGARPD 119

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------------FE 108
            FT   VL   A    L   R+ H  ++K GL +D+                      F+
Sbjct: 120 RFTFPVVLKCCARAGALGEGRAAHAAVIKLGLGADVYTANSLVALYAKLGLVGDAERVFD 179

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLV-PNAVTMLTVIRGCVALGSRA 167
           G+    +VS N +V G+++N +   A+  F     +  V  ++V ++  +  C    + A
Sbjct: 180 GMPARDIVSWNTMVDGYVSNGMGALALACFREMNDALQVGHDSVGVIAALAACCLESALA 239

Query: 168 LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
           L   IHG  I+ GL  DV V  S++DMY    ++  A  +F +M  + V++W  M+G + 
Sbjct: 240 LGREIHGYAIRHGLEQDVKVGTSLVDMYCKCGNVFFAENVFAKMPLRTVVTWNCMIGGYA 299

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
             E   DA   F +MR      + V  +NL++  A       G+ +HA VV       + 
Sbjct: 300 LNERPVDAFDCFMQMRVDGFQVEVVTAINLLTACAQTESSLFGRSVHAYVVRRHFLPHVV 359

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
           L  +++ MY K G ++SS  +F QIT+K+LVSW  +I+ Y+     +EA+  F+++  + 
Sbjct: 360 LETALLEMYGKVGKVESSEKIFGQITDKTLVSWNNMIAAYMYMEMYQEAIALFLELLNQP 419

Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
               D  T+ +++ A   L ++  C Q+H    + G+     + N ++  Y++CGN+  +
Sbjct: 420 LYP-DYFTMTTVVPAFVLLGSIRQCKQMHSYIVKLGYGDSTLIMNAVMHMYARCGNIVAS 478

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
             +F++M   +DV+SWNTII GY ++G G+ AL ++ +M  +G  P+ ST++S+L AC  
Sbjct: 479 REIFDKMPG-KDVISWNTIIIGYAIHGQGKIALEMFDEMKCSGMEPNESTFVSVLTACSV 537

Query: 468 AGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWR 527
           +GL  +G   FN M +E  + P  EHYGC+ DLL RAG L +       +       IW 
Sbjct: 538 SGLEAEGWKEFNSMQQEYGMIPQIEHYGCMTDLLGRAGELREVLRFIENMPIAPTSRIWG 597

Query: 528 ALL--------------------------SGCVL-------HVGRFQDAEALRSGSQKKG 554
           +LL                          +GC +         GR++D E +RS  ++KG
Sbjct: 598 SLLTASRNKNDIDIAEYAAERIFQLEHNNTGCYVVLSSMYADAGRWEDVERIRSLMKEKG 657

Query: 555 IIKIPGISFLNSTSRD 570
           + +    S +   +++
Sbjct: 658 LRRTEARSLVELNNKE 673



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 99/384 (25%), Positives = 188/384 (48%), Gaps = 28/384 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y ++ L++ Y K G + +AE +FD +P +++VSW+ ++ GY  NG    ++  F  M 
Sbjct: 154 DVYTANSLVALYAKLGLVGDAERVFDGMPARDIVSWNTMVDGYVSNGMGALALACFREM- 212

Query: 64  LSGLLPNSFTMVGVLVAAAGL---QNLELARSIHGLMVKFGLESDL-------------- 106
            +  L      VGV+ A A       L L R IHG  ++ GLE D+              
Sbjct: 213 -NDALQVGHDSVGVIAALAACCLESALALGREIHGYAIRHGLEQDVKVGTSLVDMYCKCG 271

Query: 107 --------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                   F  +    +V+ N ++ G+  N+    A   F   R  G     VT + ++ 
Sbjct: 272 NVFFAENVFAKMPLRTVVTWNCMIGGYALNERPVDAFDCFMQMRVDGFQVEVVTAINLLT 331

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C    S      +H   ++   +  V +  ++L+MY  +  ++++ +IF ++  K ++S
Sbjct: 332 ACAQTESSLFGRSVHAYVVRRHFLPHVVLETALLEMYGKVGKVESSEKIFGQITDKTLVS 391

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           W  M+  ++  E   +A+ +F E+    +  D   +  ++    +LG +++ KQ+H+ +V
Sbjct: 392 WNNMIAAYMYMEMYQEAIALFLELLNQPLYPDYFTMTTVVPAFVLLGSIRQCKQMHSYIV 451

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
             G      + N+++ MY++CG++ +SR +F+++  K ++SW  II GY  +G  + AL 
Sbjct: 452 KLGYGDSTLIMNAVMHMYARCGNIVASREIFDKMPGKDVISWNTIIIGYAIHGQGKIALE 511

Query: 339 QFIKMRQEKTDSVDSITLVSILTA 362
            F +M+    +  +S T VS+LTA
Sbjct: 512 MFDEMKCSGMEPNES-TFVSVLTA 534


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  249 bits (635), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 188/668 (28%), Positives = 304/668 (45%), Gaps = 113/668 (16%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEK--NVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           ++ L+  Y  S     A  L + +P    +V  W+ +I      G        +  M   
Sbjct: 194 ATNLIGTYIASNSTAYAILLLERLPPSPSSVFWWNQLIRRALHLGSPRDVFTLYRQMKSL 253

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF------------------ 107
           G  P+ +T   V  A A L +L L  S+H  + + G  S++F                  
Sbjct: 254 GWTPDHYTFPFVFKACANLSSLSLGASLHATVSRSGFASNVFVCNAVVSMYGKCGALRHA 313

Query: 108 ---------EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLV-PNAVTMLTVI 157
                     G+++  LVS N++V+ ++       A+ LF+      L+ P+ ++++ ++
Sbjct: 314 HNMFDDLCHRGIQD--LVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNIL 371

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
             C +L +      +HG +I+ GL+ DV V N+V+DMY+    ++ A ++F+ M+ KDV+
Sbjct: 372 PACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVV 431

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKS-----------------------------RII 248
           SW  M+  +        AL +F  M +                              R +
Sbjct: 432 SWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQM 491

Query: 249 CD------TVALLNLISVNAILGDLKRGKQLHAQVV-----LGGLQS---ELRLSNSIIA 294
           CD       V L++L+S    +G L  GK+ H   +     L G      +L++ N +I 
Sbjct: 492 CDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLID 551

Query: 295 MYSKCGDLDSSRSVFNQITEKS--LVSWTAIISGYVQNGCAREALNQFIKM-RQEKTDSV 351
           MY+KC   + +R +F+ ++ K   +V+WT +I GY Q+G A  AL  F  M + +K+   
Sbjct: 552 MYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKP 611

Query: 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYR-SVQNCLISSYSKCGNVDLAYIV 410
           +  TL   L A   LAAL    Q+H       +      V NCLI  YSK G+VD A IV
Sbjct: 612 NDFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIV 671

Query: 411 FEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGL 470
           F+ M   R+ VSW +++ GYG++G GE AL ++ +M +   VPD  T+L +L AC H+G+
Sbjct: 672 FDNMP-QRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHSGM 730

Query: 471 TNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALL 530
            + G+  FN+M ++  V P  EHY C+VDL  RAG L +A  L  ++     P +W ALL
Sbjct: 731 VDHGINFFNRMSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVALL 790

Query: 531 SGCVLH---------------------------------VGRFQDAEALRSGSQKKGIIK 557
           S C LH                                   R++D   +R   ++ GI K
Sbjct: 791 SACRLHSNVELGEFAANRLLELESGNDGSYTLLSNIYANARRWKDVARIRYTMKRTGIKK 850

Query: 558 IPGISFLN 565
            PG S++ 
Sbjct: 851 RPGCSWIQ 858



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 118/417 (28%), Positives = 196/417 (47%), Gaps = 24/417 (5%)

Query: 106 LFEGLKNPYLVSCNAIVAGF-INNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
           + + L + Y  S + ++  F I +KL Q        F  + L+  A   +T ++ C +L 
Sbjct: 122 VLQQLHHRYRCSISMLLRCFPIKSKLLQSQ------FTNTRLLSCATIPITALKECNSL- 174

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK--DVISWTRM 222
             A  +L+H  +I  GL+  ++ N  ++  Y        AI +   +      V  W ++
Sbjct: 175 --AHAKLLHQQSIMQGLLFHLATN--LIGTYIASNSTAYAILLLERLPPSPSSVFWWNQL 230

Query: 223 MGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL 282
           +   +      D   ++R+M+      D      +    A L  L  G  LHA V   G 
Sbjct: 231 IRRALHLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFKACANLSSLSLGASLHATVSRSGF 290

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK---SLVSWTAIISGYVQNGCAREALNQ 339
            S + + N++++MY KCG L  + ++F+ +  +    LVSW +++S Y+    A  AL  
Sbjct: 291 ASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALAL 350

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           F KM      S D I+LV+IL A   LAA     Q+HG +  +G      V N ++  Y+
Sbjct: 351 FHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYA 410

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           KCG ++ A  VF+ M F +DVVSWN ++ GY   G  E AL+L+ +MTE     D  T+ 
Sbjct: 411 KCGKMEEANKVFQRMKF-KDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWT 469

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK 516
           +++      G   + L +F QM +      S+ +   +V LL  + C+S  + L GK
Sbjct: 470 AVITGYAQRGQGCEALDVFRQMCDCG----SRPNVVTLVSLL--SACVSVGALLHGK 520



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 132/536 (24%), Positives = 234/536 (43%), Gaps = 102/536 (19%)

Query: 125 FINNKLFQQAVLL------FNFFR---GSGLVPNAVTMLTVIRGCVALGSRALCELIHGL 175
           F  N+L ++A+ L      F  +R     G  P+  T   V + C  L S +L   +H  
Sbjct: 225 FWWNQLIRRALHLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFKACANLSSLSLGASLHAT 284

Query: 176 TIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC----KDVISWTRMMGLFVDFEY 231
             + G   +V V N+V+ MY     L  A  +F ++ C    +D++SW  ++  ++    
Sbjct: 285 VSRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDL-CHRGIQDLVSWNSVVSAYMWASD 343

Query: 232 AGDALKIFREMRKSRIIC-DTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSN 290
           A  AL +F +M    ++  D ++L+N++   A L    RG+Q+H   +  GL  ++ + N
Sbjct: 344 ANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDVFVGN 403

Query: 291 SIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD- 349
           +++ MY+KCG ++ +  VF ++  K +VSW A+++GY Q G    AL+ F +M +E  + 
Sbjct: 404 AVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIEL 463

Query: 350 ---------------------------------SVDSITLVSILTASGELAALEICLQLH 376
                                              + +TLVS+L+A   + AL    + H
Sbjct: 464 DVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGKETH 523

Query: 377 GIAF---------EAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFL-RDVVSWNTI 426
             A          + G    + V N LI  Y+KC + ++A  +F+ +    RDVV+W  +
Sbjct: 524 CYAIKFILNLDGPDPGADDLK-VINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVM 582

Query: 427 IYGYGVNGHGETALALYHKMTETGEV--PDSSTYLSILNACGHAGLTNDGLVIFNQMIEE 484
           I GY  +G    AL L+  M +  +   P+  T    L AC        G  +   ++  
Sbjct: 583 IGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYVL-- 640

Query: 485 NKVKPSQEHYG--------CVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
                 +  YG        C++D+ +++G + D + +    +       W +L++G  +H
Sbjct: 641 ------RNFYGSVMLFVANCLIDMYSKSGDV-DTAQIVFDNMPQRNAVSWTSLMTGYGMH 693

Query: 537 VGRFQDAEALRSGSQKKGIIKIP--------------------GISFLNSTSRDFG 572
            GR +DA  LR   + + +  +P                    GI+F N  S+DFG
Sbjct: 694 -GRGEDA--LRVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGINFFNRMSKDFG 746



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 115/443 (25%), Positives = 200/443 (45%), Gaps = 77/443 (17%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + ++  Y K GK++EA  +F  +  K+VVSW+ ++ GYS  G  E ++  F  M 
Sbjct: 398 DVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMT 457

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVA 123
                                +N+EL                         +V+  A++ 
Sbjct: 458 --------------------EENIELD------------------------VVTWTAVIT 473

Query: 124 GFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLIL 183
           G+       +A+ +F      G  PN VT+++++  CV++G+    +  H   IK  L L
Sbjct: 474 GYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILNL 533

Query: 184 --------DVSVNNSVLDMYSCLMDLDAAIQIFREMECK--DVISWTRMMGLFVDFEYAG 233
                   D+ V N ++DMY+     + A ++F  +  K  DV++WT M+G +     A 
Sbjct: 534 DGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDAN 593

Query: 234 DALKIFREMRK--SRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS-ELRLSN 290
           +AL++F  M K    I  +   L   +   A L  L+ G+Q+HA V+     S  L ++N
Sbjct: 594 NALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVMLFVAN 653

Query: 291 SIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDS 350
            +I MYSK GD+D+++ VF+ + +++ VSWT++++GY  +G   +AL  F +MR+     
Sbjct: 654 CLIDMYSKSGDVDTAQIVFDNMPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVPL-V 712

Query: 351 VDSITLVSILTASGELAALEICLQLHGIAF----------EAGFPRYRSVQNCLISSYSK 400
            D IT + +L A      ++     HGI F          + G   Y     C++  + +
Sbjct: 713 PDGITFLVVLYACSHSGMVD-----HGINFFNRMSKDFGVDPGPEHY----ACMVDLWGR 763

Query: 401 CGNVDLAYIVFEEMGFLRDVVSW 423
            G +  A  +  EM      V W
Sbjct: 764 AGRLGEAMKLINEMPMEPTPVVW 786


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  249 bits (635), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 192/663 (28%), Positives = 314/663 (47%), Gaps = 116/663 (17%)

Query: 15  YFKSGKIKEAENLFDE-IPEKNVVSWSIVIHGYSIN-GFHEKSMKAFSHMMLSGLLPNSF 72
           Y + G   EA +L    IP  + V W   +   S+  G  + ++  +  M   G LP+ +
Sbjct: 69  YIECGASAEAVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHY 128

Query: 73  TMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF-----------------------EG 109
           T   VL A   + +L    S+H ++   GL S++F                       E 
Sbjct: 129 TFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEV 188

Query: 110 LKNPY--LVSCNAIVAGFINNKLFQQAVLLFNFFRGS----GLVPNAVTMLTVIRGCVAL 163
           L+     +VS N+I+A ++     + A L   F  G+     L P+A+T++ ++  C ++
Sbjct: 189 LERKIEDIVSWNSILAAYVQGGQSRTA-LRIAFRMGNHYSLKLRPDAITLVNILPACASV 247

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM- 222
            +    + +HG +++ GL+ DV V N+++ MY+    ++ A ++F  ++ KDV+SW  M 
Sbjct: 248 FALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMV 307

Query: 223 ------------MGLFVDFE----------------------YAGDALKIFREMRKSRII 248
                       + LF   +                      +  +AL +FR+M+   + 
Sbjct: 308 TGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLE 367

Query: 249 CDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL-------QSELRLSNSIIAMYSKCGD 301
            + V L +L+S  A +G L  GKQ HA V+   L       + +L + N +I MY+KC  
Sbjct: 368 PNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKS 427

Query: 302 LDSSRSVFNQI--TEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD-SVDSITLVS 358
              +RS+F+ I   +K++V+WT +I GY Q+G A +AL  F ++ ++KT    ++ TL  
Sbjct: 428 YRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSC 487

Query: 359 ILTASGELAALEICLQLHGIAFE-AGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFL 417
            L A   L  L +  QLH  A           V NCLI  YSK G++D A  VF+ M  L
Sbjct: 488 ALMACARLGELRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMK-L 546

Query: 418 RDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVI 477
           R+VVSW +++ GYG++G GE AL L+ +M + G   D  T+L +L AC H+G+ + G++ 
Sbjct: 547 RNVVSWTSLMTGYGMHGRGEEALHLFDQMQKLGFAVDGITFLVVLYACSHSGMVDQGMIY 606

Query: 478 FNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN--IWRALLSGCVL 535
           F+ M++   + P  EHY C+VDLL RAG L++A  L   +   M P   +W ALLS   +
Sbjct: 607 FHDMVKGFGITPGAEHYACMVDLLGRAGRLNEAMELIKNM--SMEPTAVVWVALLSASRI 664

Query: 536 HVG---------------------------------RFQDAEALRSGSQKKGIIKIPGIS 562
           H                                   R++D   +RS  +  GI K PG S
Sbjct: 665 HANIELGEYAASKLTELGAENDGSYTLLSNLYANARRWKDVARIRSLMKHTGIRKRPGCS 724

Query: 563 FLN 565
           ++ 
Sbjct: 725 WIQ 727



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 149/536 (27%), Positives = 252/536 (47%), Gaps = 88/536 (16%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEK---NVVSWSIVIHGYSINGFHEKSMK-AF---SHMM 63
           +++ Y + G + +A  +FDE+ E+   ++VSW+ ++  Y   G    +++ AF   +H  
Sbjct: 168 IVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYS 227

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
           L  L P++ T+V +L A A +  L+  + +HG  V+ GL  D                  
Sbjct: 228 LK-LRPDAITLVNILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMN 286

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLF----------------------- 138
               +FEG+K   +VS NA+V G+     F  A+ LF                       
Sbjct: 287 EANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYA 346

Query: 139 ---------NFFRG---SGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLIL--- 183
                    + FR     GL PN VT+ +++ GC ++G+    +  H   IK  L L   
Sbjct: 347 QKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWN 406

Query: 184 ----DVSVNNSVLDMYSCLMDLDAAIQIFREMECKD--VISWTRMMGLFVDFEYAGDALK 237
               D+ V N ++DMY+       A  IF  +E KD  V++WT M+G +     A DALK
Sbjct: 407 DKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALK 466

Query: 238 IFREM--RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE-LRLSNSIIA 294
           +F ++  +K+ +  +   L   +   A LG+L+ G+QLHA  +    +SE L + N +I 
Sbjct: 467 LFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRNENESEVLYVGNCLID 526

Query: 295 MYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSI 354
           MYSK GD+D++R+VF+ +  +++VSWT++++GY  +G   EAL+ F +M Q+   +VD I
Sbjct: 527 MYSKSGDIDAARAVFDNMKLRNVVSWTSLMTGYGMHGRGEEALHLFDQM-QKLGFAVDGI 585

Query: 355 TLVSILTASGELAALEICL-----QLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYI 409
           T + +L A      ++  +      + G     G   Y     C++    + G ++ A  
Sbjct: 586 TFLVVLYACSHSGMVDQGMIYFHDMVKGFGITPGAEHYA----CMVDLLGRAGRLNEAME 641

Query: 410 VFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS-TYLSILNA 464
           + + M      V W  ++    ++ + E       K+TE G   D S T LS L A
Sbjct: 642 LIKNMSMEPTAVVWVALLSASRIHANIELGEYAASKLTELGAENDGSYTLLSNLYA 697



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/371 (27%), Positives = 173/371 (46%), Gaps = 22/371 (5%)

Query: 139 NFFRGSGLVPNAVTMLTVIRGCVALGSRALCE---LIHGLTIKLGLILDVSVNNSVLDMY 195
           +F+      P  + +++++R C  L +  L      +HG T      +   +        
Sbjct: 19  HFYSTFTTSPPTIPLISLLRQCKTLINAKLAHQQIFVHGFTEMFSYAVGAYIE------- 71

Query: 196 SCLMDLDAAIQIFREMECKD-VISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVAL 254
            C    +A   + R +     V  W  ++   V      D L  + +M++   + D    
Sbjct: 72  -CGASAEAVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTF 130

Query: 255 LNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE 314
             ++     +  L+ G  +HA V   GL S + + NSI+AMY +CG LD +  +F+++ E
Sbjct: 131 PFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLE 190

Query: 315 KS---LVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV--DSITLVSILTASGELAAL 369
           +    +VSW +I++ YVQ G +R AL    +M    +  +  D+ITLV+IL A   + AL
Sbjct: 191 RKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFAL 250

Query: 370 EICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYG 429
           +   Q+HG +   G      V N L+S Y+KC  ++ A  VFE +   +DVVSWN ++ G
Sbjct: 251 QHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIK-KKDVVSWNAMVTG 309

Query: 430 YGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQM----IEEN 485
           Y   G  ++AL+L+  M E     D  T+ +++      G   + L +F QM    +E N
Sbjct: 310 YSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPN 369

Query: 486 KVKPSQEHYGC 496
            V  +    GC
Sbjct: 370 VVTLASLLSGC 380



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 160/363 (44%), Gaps = 40/363 (11%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKN----VVSWSIVIHGYSINGFHEKSMKAF 59
           D  + + +++ Y + G    A +LF  + E++    V++WS VI GY+  G   +++  F
Sbjct: 299 DVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVF 358

Query: 60  SHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK-------------------- 99
             M L GL PN  T+  +L   A +  L   +  H  ++K                    
Sbjct: 359 RQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGL 418

Query: 100 ---------FGLESDLFEGL--KNPYLVSCNAIVAGFINNKLFQQAVLLFN--FFRGSGL 146
                    + +   +F+ +  K+  +V+   ++ G+  +     A+ LF   F + + L
Sbjct: 419 IDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSL 478

Query: 147 VPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDV-SVNNSVLDMYSCLMDLDAAI 205
            PNA T+   +  C  LG   L   +H   ++     +V  V N ++DMYS   D+DAA 
Sbjct: 479 KPNAFTLSCALMACARLGELRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAAR 538

Query: 206 QIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILG 265
            +F  M+ ++V+SWT +M  +       +AL +F +M+K     D +  L ++   +  G
Sbjct: 539 AVFDNMKLRNVVSWTSLMTGYGMHGRGEEALHLFDQMQKLGFAVDGITFLVVLYACSHSG 598

Query: 266 DLKRGKQLHAQVVLG-GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAI 323
            + +G      +V G G+         ++ +  + G L+ +  +   ++ E + V W A+
Sbjct: 599 MVDQGMIYFHDMVKGFGITPGAEHYACMVDLLGRAGRLNEAMELIKNMSMEPTAVVWVAL 658

Query: 324 ISG 326
           +S 
Sbjct: 659 LSA 661


>gi|297833652|ref|XP_002884708.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330548|gb|EFH60967.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1028

 Score =  249 bits (635), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 172/623 (27%), Positives = 294/623 (47%), Gaps = 63/623 (10%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y  S L+S Y K  K++ A  +F+ + E+N V W+ +I GY+ NG   K M+ F  M  S
Sbjct: 363 YVGSSLVSMYSKCEKMEAAAKVFEALEERNDVLWNAMIRGYAHNGESHKVMELFMDMKSS 422

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPYL-------- 115
           G   + FT   +L   A   +LE+    H +++K  L  +LF G  L + Y         
Sbjct: 423 GYNIDDFTFTSLLSTCAVSHDLEMGSQFHSIIIKKKLTKNLFVGNALVDMYAKCGALEDA 482

Query: 116 ------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
                       VS N I+ G++ ++   +A  LF      G+V +   + + ++ C  +
Sbjct: 483 RQIFEHMCDRDNVSWNTIIGGYVQDENESEAFDLFMRMNSCGIVSDGACLASTLKACTNV 542

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
                 + +H L++K GL   +   +S++DMYS    ++ A ++F  M    V+S   ++
Sbjct: 543 HGLYQGKQVHCLSVKCGLDRVLHTGSSLIDMYSKCGIIEDARKVFSSMPEWSVVSMNALI 602

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
             +       +A+ +F+EM    +    +    ++        L  G Q H Q++  G  
Sbjct: 603 AGYSQNNLE-EAVVLFQEMLTKGVNPSEITFATIVEACHKPESLTLGTQFHGQIIKWGFS 661

Query: 284 SELR-LSNSIIAMYSKCGDLDSSRSVFNQITE-KSLVSWTAIISGYVQNGCAREALNQFI 341
           SE   L  S++ +Y     +  + ++F++++  KS+V WT ++SG+ QNG   EAL  + 
Sbjct: 662 SEGEYLGISLLGLYMNSRRMAEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYK 721

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +MR +     D  T V++L     L++L     +H + F           N LI  Y+KC
Sbjct: 722 EMRHDGALP-DQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKC 780

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G++  +  VF+EM    +VVSWN++I GY  NG+ E AL ++  M ++  +PD  T+L +
Sbjct: 781 GDMKSSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGV 840

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L AC HAG  +DG  IF  MI +  ++   +H  C+VDLL R G L +A        + +
Sbjct: 841 LTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEA--QNL 898

Query: 522 GPN--IWRALLSGCVLH---------------------------------VGRFQDAEAL 546
            P+  +W +LL  C +H                                  GR+++A AL
Sbjct: 899 KPDARLWSSLLGACRIHGDDMRGEIAAERLIELEPQNSSAYVLLSNIYASQGRWEEANAL 958

Query: 547 RSGSQKKGIIKIPGISFLNSTSR 569
           R   + +G+ K+PG S+++   R
Sbjct: 959 RKAMRDRGVKKVPGYSWIDVGQR 981



 Score =  198 bits (504), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 147/547 (26%), Positives = 259/547 (47%), Gaps = 30/547 (5%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           +++ Y   GK+K+A  LF E+P  +VV+W+++I G+   G    +++ F +M  S +   
Sbjct: 267 VINTYISLGKLKDARLLFGEMPSPDVVAWNVMISGHGKRGCEIVAIEYFLNMRKSSVKST 326

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------------FE 108
             T+  VL A   + NL+L   +H   +K GL S++                      FE
Sbjct: 327 RSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFE 386

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            L+    V  NA++ G+ +N    + + LF   + SG   +  T  +++  C       +
Sbjct: 387 ALEERNDVLWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAVSHDLEM 446

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
               H + IK  L  ++ V N+++DMY+    L+ A QIF  M  +D +SW  ++G +V 
Sbjct: 447 GSQFHSIIIKKKLTKNLFVGNALVDMYAKCGALEDARQIFEHMCDRDNVSWNTIIGGYVQ 506

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
            E   +A  +F  M    I+ D   L + +     +  L +GKQ+H   V  GL   L  
Sbjct: 507 DENESEAFDLFMRMNSCGIVSDGACLASTLKACTNVHGLYQGKQVHCLSVKCGLDRVLHT 566

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
            +S+I MYSKCG ++ +R VF+ + E S+VS  A+I+GY QN    EA+  F +M  +  
Sbjct: 567 GSSLIDMYSKCGIIEDARKVFSSMPEWSVVSMNALIAGYSQNNL-EEAVVLFQEMLTKGV 625

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFP---RYRSVQNCLISSYSKCGNVD 405
           +  + IT  +I+ A  +  +L +  Q HG   + GF     Y  +   L+  Y     + 
Sbjct: 626 NPSE-ITFATIVEACHKPESLTLGTQFHGQIIKWGFSSEGEYLGIS--LLGLYMNSRRMA 682

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            A  +F E+   + +V W  ++ G+  NG  E AL  Y +M   G +PD +T++++L  C
Sbjct: 683 EACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGALPDQATFVTVLRVC 742

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI 525
                  +G  I + +I        +     ++D+ A+ G +  +S +  ++        
Sbjct: 743 SVLSSLREGRAI-HSLIFHLAHDLDELTSNTLIDMYAKCGDMKSSSQVFDEMRRRSNVVS 801

Query: 526 WRALLSG 532
           W +L++G
Sbjct: 802 WNSLING 808



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 134/473 (28%), Positives = 221/473 (46%), Gaps = 60/473 (12%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTM 74
           Y K  ++  AE  F+ + EK+V +W+ ++  YS  G   K +++F  +  + + PN FT 
Sbjct: 105 YAKCAQVSYAEKQFNSL-EKDVTAWNSMLSMYSSIGQPGKVLRSFVSLFENLIFPNKFTF 163

Query: 75  VGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFEGLKN 112
             VL  +A   N+E  R IH  M+K GLE +                      +F+G+ +
Sbjct: 164 SIVLSTSARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRLGDAQRVFDGIVD 223

Query: 113 PYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELI 172
           P  V    + +G++   L ++AV++F   RG G  P+ +  +TVI   ++LG        
Sbjct: 224 PNTVCWTCLFSGYVKAGLPEEAVIVFERMRGEGHRPDHLAFVTVINTYISLGK------- 276

Query: 173 HGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYA 232
                                       L  A  +F EM   DV++W  M+         
Sbjct: 277 ----------------------------LKDARLLFGEMPSPDVVAWNVMISGHGKRGCE 308

Query: 233 GDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSI 292
             A++ F  MRKS +      L +++S   I+ +L  G  +HA+ +  GL S + + +S+
Sbjct: 309 IVAIEYFLNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSL 368

Query: 293 IAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVD 352
           ++MYSKC  ++++  VF  + E++ V W A+I GY  NG + + +  F+ M+    + +D
Sbjct: 369 VSMYSKCEKMEAAAKVFEALEERNDVLWNAMIRGYAHNGESHKVMELFMDMKSSGYN-ID 427

Query: 353 SITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFE 412
             T  S+L+       LE+  Q H I  +    +   V N L+  Y+KCG ++ A  +FE
Sbjct: 428 DFTFTSLLSTCAVSHDLEMGSQFHSIIIKKKLTKNLFVGNALVDMYAKCGALEDARQIFE 487

Query: 413 EMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            M   RD VSWNTII GY  + +   A  L+ +M   G V D +   S L AC
Sbjct: 488 HM-CDRDNVSWNTIIGGYVQDENESEAFDLFMRMNSCGIVSDGACLASTLKAC 539



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 143/530 (26%), Positives = 247/530 (46%), Gaps = 18/530 (3%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           + Y    L+  Y K  ++ +A+ +FD I + N V W+ +  GY   G  E+++  F  M 
Sbjct: 194 NSYCGGALVDMYAKCDRLGDAQRVFDGIVDPNTVCWTCLFSGYVKAGLPEEAVIVFERMR 253

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVA 123
             G  P+    V V+     L  L+ AR + G M              +P +V+ N +++
Sbjct: 254 GEGHRPDHLAFVTVINTYISLGKLKDARLLFGEM-------------PSPDVVAWNVMIS 300

Query: 124 GFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLIL 183
           G         A+  F   R S +     T+ +V+     + +  L  ++H   IKLGL  
Sbjct: 301 GHGKRGCEIVAIEYFLNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLAS 360

Query: 184 DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMR 243
           ++ V +S++ MYS    ++AA ++F  +E ++ + W  M+  +     +   +++F +M+
Sbjct: 361 NIYVGSSLVSMYSKCEKMEAAAKVFEALEERNDVLWNAMIRGYAHNGESHKVMELFMDMK 420

Query: 244 KSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLD 303
            S    D     +L+S  A+  DL+ G Q H+ ++   L   L + N+++ MY+KCG L+
Sbjct: 421 SSGYNIDDFTFTSLLSTCAVSHDLEMGSQFHSIIIKKKLTKNLFVGNALVDMYAKCGALE 480

Query: 304 SSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTAS 363
            +R +F  + ++  VSW  II GYVQ+    EA + F++M      S D   L S L A 
Sbjct: 481 DARQIFEHMCDRDNVSWNTIIGGYVQDENESEAFDLFMRMNSCGIVS-DGACLASTLKAC 539

Query: 364 GELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSW 423
             +  L    Q+H ++ + G  R     + LI  YSKCG ++ A  VF  M     VVS 
Sbjct: 540 TNVHGLYQGKQVHCLSVKCGLDRVLHTGSSLIDMYSKCGIIEDARKVFSSMPEW-SVVSM 598

Query: 424 NTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIE 483
           N +I GY  N + E A+ L+ +M   G  P   T+ +I+ AC        G     Q+I+
Sbjct: 599 NALIAGYSQN-NLEEAVVLFQEMLTKGVNPSEITFATIVEACHKPESLTLGTQFHGQIIK 657

Query: 484 ENKVKPSQEHYG-CVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSG 532
                   E+ G  ++ L   +  +++A  L  +L       +W  ++SG
Sbjct: 658 WG-FSSEGEYLGISLLGLYMNSRRMAEACALFSELSSPKSIVLWTGMMSG 706



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 93/403 (23%), Positives = 174/403 (43%), Gaps = 66/403 (16%)

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           +H  ++ LG+  +  + N+++D+Y+    +  A + F  +E KDV +W  M+ ++     
Sbjct: 82  VHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFNSLE-KDVTAWNSMLSMYSSIGQ 140

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
            G  L+ F  + ++ I  +      ++S +A   +++ G+Q+H  ++  GL+       +
Sbjct: 141 PGKVLRSFVSLFENLIFPNKFTFSIVLSTSARETNVEFGRQIHCSMIKMGLERNSYCGGA 200

Query: 292 IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE--KTD 349
           ++ MY+KC  L  ++ VF+ I + + V WT + SGYV+ G   EA+  F +MR E  + D
Sbjct: 201 LVDMYAKCDRLGDAQRVFDGIVDPNTVCWTCLFSGYVKAGLPEEAVIVFERMRGEGHRPD 260

Query: 350 SVDSITLVSILTASGEL---------------AALEICLQLHG------IAFE------- 381
            +  +T+++   + G+L                A  + +  HG      +A E       
Sbjct: 261 HLAFVTVINTYISLGKLKDARLLFGEMPSPDVVAWNVMISGHGKRGCEIVAIEYFLNMRK 320

Query: 382 AGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFL------------------------ 417
           +     RS    ++S+     N+DL  +V  E   L                        
Sbjct: 321 SSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEA 380

Query: 418 ----------RDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
                     R+ V WN +I GY  NG     + L+  M  +G   D  T+ S+L+ C  
Sbjct: 381 AAKVFEALEERNDVLWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAV 440

Query: 468 AGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
           +     G   F+ +I + K+  +      +VD+ A+ G L DA
Sbjct: 441 SHDLEMG-SQFHSIIIKKKLTKNLFVGNALVDMYAKCGALEDA 482



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 103/215 (47%), Gaps = 3/215 (1%)

Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISG 326
           L+ GK +H++ ++ G+ SE RL N+I+ +Y+KC  +  +   FN + EK + +W +++S 
Sbjct: 76  LRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFNSL-EKDVTAWNSMLSM 134

Query: 327 YVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPR 386
           Y   G   + L  F+ +  E     +  T   +L+ S     +E   Q+H    + G  R
Sbjct: 135 YSSIGQPGKVLRSFVSLF-ENLIFPNKFTFSIVLSTSARETNVEFGRQIHCSMIKMGLER 193

Query: 387 YRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM 446
                  L+  Y+KC  +  A  VF+ +    + V W  +  GY   G  E A+ ++ +M
Sbjct: 194 NSYCGGALVDMYAKCDRLGDAQRVFDGI-VDPNTVCWTCLFSGYVKAGLPEEAVIVFERM 252

Query: 447 TETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQM 481
              G  PD   +++++N     G   D  ++F +M
Sbjct: 253 RGEGHRPDHLAFVTVINTYISLGKLKDARLLFGEM 287



 Score = 42.0 bits (97), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 71/172 (41%), Gaps = 14/172 (8%)

Query: 368 ALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
           AL I   +H  +   G      + N ++  Y+KC  V  A   F  +   +DV +WN+++
Sbjct: 75  ALRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFNSLE--KDVTAWNSML 132

Query: 428 YGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKV 487
             Y   G     L  +  + E    P+  T+  +L+          G  I   MI   K+
Sbjct: 133 SMYSSIGQPGKVLRSFVSLFENLIFPNKFTFSIVLSTSARETNVEFGRQIHCSMI---KM 189

Query: 488 KPSQEHY--GCVVDLLARAGCLSDASGLAGKLLEGM-GPNI--WRALLSGCV 534
              +  Y  G +VD+ A+   L DA     ++ +G+  PN   W  L SG V
Sbjct: 190 GLERNSYCGGALVDMYAKCDRLGDAQ----RVFDGIVDPNTVCWTCLFSGYV 237


>gi|302807080|ref|XP_002985271.1| hypothetical protein SELMODRAFT_121697 [Selaginella moellendorffii]
 gi|300147099|gb|EFJ13765.1| hypothetical protein SELMODRAFT_121697 [Selaginella moellendorffii]
          Length = 744

 Score =  249 bits (635), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 151/551 (27%), Positives = 271/551 (49%), Gaps = 33/551 (5%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTM 74
           Y + G +  A   FD +  +NVVSWS +I  Y+  G    +++ F  M   G+  N+ T 
Sbjct: 2   YNRCGSVIHARRAFDAMVVRNVVSWSAMIAAYAQRGHPADALELFVRMDHEGVKANAITF 61

Query: 75  VGVLVAAAGLQNLELARSIHGLMVKFGLESD-----------------------LFEGLK 111
           V VL A A L  + L +SIH  +V  GL  D                       +FE ++
Sbjct: 62  VSVLDACASLGAIALGKSIHERIVADGLLGDDVILGNTIVNMYGKCGEVDLAREVFERME 121

Query: 112 NPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCEL 171
               V+ N ++A    +  +++A  L       GL PN +T+++VI  C  + S +   +
Sbjct: 122 AKNTVTWNTMIAACSRHDRYKEAFALLGEMDLDGLRPNKITLVSVIDACAWMQSISRGRI 181

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           +H +    GL  D +V N+++++Y     L AA      +E +D ISWT ++  +    +
Sbjct: 182 VHEIVAGEGLESDNAVANALVNLYGKCGKLRAARHALEGIETRDKISWTTLLAAYARHGH 241

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
              A+ + + M    +  D+   +NL+     +  L  G+++H ++   G++ +  L  +
Sbjct: 242 GKRAIAVIKRMDHEGVKLDSFTFVNLLESCVAIAALALGEEIHDRLAESGIELDPVLQTA 301

Query: 292 IIAMYSKCGDLDSSRSVFNQITE-KSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDS 350
           ++ MY KCG+ D++R  F+++ + + +  W A+++ YV     +E L  F +M  +   +
Sbjct: 302 LVDMYGKCGNPDAARRAFDRMRDVRDVTVWNALLAAYVLRDQGKETLGIFARMSLQGV-A 360

Query: 351 VDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC------LISSYSKCGNV 404
            D++T +SIL A   LAAL +    H    E G    ++V +       +I+ Y+KCG++
Sbjct: 361 PDAVTFLSILDACASLAALGLGRLTHSRMLERGLFDRQAVASADLLTTSVINMYAKCGSL 420

Query: 405 DLAYIVFEEMGFLR--DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
             A   F +    R  DVV+W+ ++  Y   G  E AL  ++ M + G  PDS +++S +
Sbjct: 421 ADAKAEFAKARRARASDVVAWSAMVAAYSQFGLSEEALRCFYSMQQEGVKPDSVSFVSAI 480

Query: 463 NACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMG 522
             C H+GL  + +  F  +  ++ + P++ H+ C+VDLL+RAG + +A  L  +   G  
Sbjct: 481 AGCSHSGLVREAVAFFTSLRHDHGIAPTEAHFACLVDLLSRAGWIREAEALMRRAPLGAH 540

Query: 523 PNIWRALLSGC 533
            + W  LLS C
Sbjct: 541 HSTWMTLLSAC 551



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 121/456 (26%), Positives = 216/456 (47%), Gaps = 46/456 (10%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           +++ Y K G++  A  +F+ +  KN V+W+ +I   S +  ++++      M L GL PN
Sbjct: 100 IVNMYGKCGEVDLAREVFERMEAKNTVTWNTMIAACSRHDRYKEAFALLGEMDLDGLRPN 159

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFE 108
             T+V V+ A A +Q++   R +H ++   GLESD                        E
Sbjct: 160 KITLVSVIDACAWMQSISRGRIVHEIVAGEGLESDNAVANALVNLYGKCGKLRAARHALE 219

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
           G++    +S   ++A +  +   ++A+ +       G+  ++ T + ++  CVA+ + AL
Sbjct: 220 GIETRDKISWTTLLAAYARHGHGKRAIAVIKRMDHEGVKLDSFTFVNLLESCVAIAALAL 279

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM-ECKDVISWTRMMGLFV 227
            E IH    + G+ LD  +  +++DMY    + DAA + F  M + +DV  W  ++  +V
Sbjct: 280 GEEIHDRLAESGIELDPVLQTALVDMYGKCGNPDAARRAFDRMRDVRDVTVWNALLAAYV 339

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL----- 282
             +   + L IF  M    +  D V  L+++   A L  L  G+  H++++  GL     
Sbjct: 340 LRDQGKETLGIFARMSLQGVAPDAVTFLSILDACASLAALGLGRLTHSRMLERGLFDRQA 399

Query: 283 -QSELRLSNSIIAMYSKCGDLDSSRSVF---NQITEKSLVSWTAIISGYVQNGCAREALN 338
             S   L+ S+I MY+KCG L  +++ F    +     +V+W+A+++ Y Q G + EAL 
Sbjct: 400 VASADLLTTSVINMYAKCGSLADAKAEFAKARRARASDVVAWSAMVAAYSQFGLSEEALR 459

Query: 339 QFIKMRQE--KTDSVDSITLVSILTASG---ELAALEICLQL-HGIA-FEAGFPRYRSVQ 391
            F  M+QE  K DSV  ++ ++  + SG   E  A    L+  HGIA  EA F       
Sbjct: 460 CFYSMQQEGVKPDSVSFVSAIAGCSHSGLVREAVAFFTSLRHDHGIAPTEAHFA------ 513

Query: 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
            CL+   S+ G +  A  +           +W T++
Sbjct: 514 -CLVDLLSRAGWIREAEALMRRAPLGAHHSTWMTLL 548



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 172/345 (49%), Gaps = 9/345 (2%)

Query: 204 AIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAI 263
           A + F  M  ++V+SW+ M+  +    +  DAL++F  M    +  + +  ++++   A 
Sbjct: 11  ARRAFDAMVVRNVVSWSAMIAAYAQRGHPADALELFVRMDHEGVKANAITFVSVLDACAS 70

Query: 264 LGDLKRGKQLHAQVVLGG-LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTA 322
           LG +  GK +H ++V  G L  ++ L N+I+ MY KCG++D +R VF ++  K+ V+W  
Sbjct: 71  LGAIALGKSIHERIVADGLLGDDVILGNTIVNMYGKCGEVDLAREVFERMEAKNTVTWNT 130

Query: 323 IISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEA 382
           +I+   ++   +EA     +M  +     + ITLVS++ A   + ++     +H I    
Sbjct: 131 MIAACSRHDRYKEAFALLGEMDLDGLRP-NKITLVSVIDACAWMQSISRGRIVHEIVAGE 189

Query: 383 GFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALAL 442
           G     +V N L++ Y KCG +  A    E +   RD +SW T++  Y  +GHG+ A+A+
Sbjct: 190 GLESDNAVANALVNLYGKCGKLRAARHALEGIE-TRDKISWTTLLAAYARHGHGKRAIAV 248

Query: 443 YHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEEN-KVKPSQEHYGCVVDLL 501
             +M   G   DS T++++L +C        G  I +++ E   ++ P  +    +VD+ 
Sbjct: 249 IKRMDHEGVKLDSFTFVNLLESCVAIAALALGEEIHDRLAESGIELDPVLQ--TALVDMY 306

Query: 502 ARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEAL 546
            + G    A     ++ +     +W ALL+  VL   R Q  E L
Sbjct: 307 GKCGNPDAARRAFDRMRDVRDVTVWNALLAAYVL---RDQGKETL 348



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 137/272 (50%), Gaps = 7/272 (2%)

Query: 295 MYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSI 354
           MY++CG +  +R  F+ +  +++VSW+A+I+ Y Q G   +AL  F++M  E   + ++I
Sbjct: 1   MYNRCGSVIHARRAFDAMVVRNVVSWSAMIAAYAQRGHPADALELFVRMDHEGVKA-NAI 59

Query: 355 TLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV-QNCLISSYSKCGNVDLAYIVFEE 413
           T VS+L A   L A+ +   +H      G      +  N +++ Y KCG VDLA  VFE 
Sbjct: 60  TFVSVLDACASLGAIALGKSIHERIVADGLLGDDVILGNTIVNMYGKCGEVDLAREVFER 119

Query: 414 MGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTND 473
           M   ++ V+WNT+I     +   + A AL  +M   G  P+  T +S+++AC      + 
Sbjct: 120 ME-AKNTVTWNTMIAACSRHDRYKEAFALLGEMDLDGLRPNKITLVSVIDACAWMQSISR 178

Query: 474 GLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGC 533
           G ++ ++++    ++        +V+L  + G L  A+  A + +E      W  LL+  
Sbjct: 179 GRIV-HEIVAGEGLESDNAVANALVNLYGKCGKLR-AARHALEGIETRDKISWTTLLAAY 236

Query: 534 VLHVGRFQDAEALRSGSQKKGIIKIPGISFLN 565
             H G  + A A+      +G +K+   +F+N
Sbjct: 237 ARH-GHGKRAIAVIKRMDHEG-VKLDSFTFVN 266



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/284 (22%), Positives = 135/284 (47%), Gaps = 32/284 (11%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ L++ Y K GK++ A +  + I  ++ +SW+ ++  Y+ +G  ++++     M   G+
Sbjct: 198 ANALVNLYGKCGKLRAARHALEGIETRDKISWTTLLAAYARHGHGKRAIAVIKRMDHEGV 257

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
             +SFT V +L +   +  L L   IH  + + G+E D                      
Sbjct: 258 KLDSFTFVNLLESCVAIAALALGEEIHDRLAESGIELDPVLQTALVDMYGKCGNPDAARR 317

Query: 106 LFEGLKNPYLVSC-NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
            F+ +++   V+  NA++A ++     ++ + +F      G+ P+AVT L+++  C +L 
Sbjct: 318 AFDRMRDVRDVTVWNALLAAYVLRDQGKETLGIFARMSLQGVAPDAVTFLSILDACASLA 377

Query: 165 SRALCELIHGLTIKLGLILDVSV------NNSVLDMYS---CLMDLDAAIQIFREMECKD 215
           +  L  L H   ++ GL    +V        SV++MY+    L D  A     R     D
Sbjct: 378 ALGLGRLTHSRMLERGLFDRQAVASADLLTTSVINMYAKCGSLADAKAEFAKARRARASD 437

Query: 216 VISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLIS 259
           V++W+ M+  +  F  + +AL+ F  M++  +  D+V+ ++ I+
Sbjct: 438 VVAWSAMVAAYSQFGLSEEALRCFYSMQQEGVKPDSVSFVSAIA 481


>gi|297827565|ref|XP_002881665.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297327504|gb|EFH57924.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 836

 Score =  248 bits (634), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 163/552 (29%), Positives = 290/552 (52%), Gaps = 25/552 (4%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           SS L+  Y K   +  AE +F+E+  K+  SW  ++  Y+ NG  E+ ++ F  M    +
Sbjct: 237 SSGLIDMYCKCADLYAAECVFEEVFSKDESSWGTMMAAYAHNGSFEEVLELFDVMRNYDV 296

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
             N       L AAA + NLE   +IH   V+ G+ SD                      
Sbjct: 297 RMNKVAAASALQAAAYVGNLEKGIAIHEYTVQQGMMSDISVATSLINMYSKCGELELAEQ 356

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           LF  +K+  +VS +A++A F       +A+ LF     +   PNAVT+ +V++GC  + +
Sbjct: 357 LFIKIKDRDVVSWSAMIASFEQAGQHDEALSLFRDMMRTHFKPNAVTLTSVLQGCAGVAA 416

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
             L + IH   IK  +  ++    +V+ MY+        ++ F  +  KD I++  +   
Sbjct: 417 SRLGKSIHCYAIKADVESELETATAVISMYAKCGLFSPTLKAFERLPIKDAIAFNALAQG 476

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +     A  A  +++ M+   +  D+  ++ ++   A+  D  RG  ++ Q++  G  SE
Sbjct: 477 YTQIGDASKAFDVYKNMKLHGVCPDSGTMVGMLQTCALCSDYARGSCVYGQIIKHGFDSE 536

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
             +++++I M++KC  L +++S+F++   EKS VSW  +++GY+ +G A EA+  F +M+
Sbjct: 537 CHVAHALIDMFTKCDALAAAKSLFDKCGFEKSTVSWNIMMNGYLLHGQAEEAIATFRQMK 596

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
            EK    +++T V+I+ A+ ELAAL + + +H    + GF  +  V N L+  Y+KCG +
Sbjct: 597 VEKFQP-NAVTFVNIVRAAAELAALSLGMSVHSSLIQFGFCSHTPVGNSLVDMYAKCGMI 655

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           + +   F E+   +++VSWNT++  Y  +G    A++L+  M E    PDS ++LS+L+A
Sbjct: 656 ESSKKCFIEIRN-KNMVSWNTMLSAYAAHGLANCAVSLFLSMQENELKPDSVSFLSVLSA 714

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C HAGL  +G  IF +M E +K++   EHY C+VDLL ++G   +A  +  ++       
Sbjct: 715 CRHAGLAEEGKRIFKEMEERHKIEAKVEHYACMVDLLGKSGLFDEAVEMVRRMRVKASVG 774

Query: 525 IWRALLSGCVLH 536
           +W ALL+   +H
Sbjct: 775 VWGALLNSSRMH 786



 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 159/588 (27%), Positives = 277/588 (47%), Gaps = 36/588 (6%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           + P+N  +L++ Y    +   +  + D +P   VV W+ +I GY+  G H+++++ F +M
Sbjct: 33  LKPHN--QLINAYSLFQRPDLSRKIVDSVPYPGVVLWNSMIRGYTRAGLHKEALEVFGYM 90

Query: 63  M-LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGL----------- 110
               G+ P+ +T    L A AG  + E    IH L+ + G ESD++ G            
Sbjct: 91  SEAKGIDPDKYTFTFALKACAGSMDFEEGLRIHDLIAEMGFESDVYIGTALVEMYCKAGD 150

Query: 111 ---------KNPY--LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                    K P   +V+ N +V+G   N    +A+ LF     S +  + V++  +I  
Sbjct: 151 LVSARQVFDKMPVKDIVTWNTMVSGLAQNGCSSEALRLFRDMHSSFVDIDHVSLYNLIPA 210

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
              L    +C  +HGL IK G     + ++ ++DMY    DL AA  +F E+  KD  SW
Sbjct: 211 VSKLEKNDVCRCLHGLVIKKGFT--SAFSSGLIDMYCKCADLYAAECVFEEVFSKDESSW 268

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
             MM  +       + L++F  MR   +  + VA  + +   A +G+L++G  +H   V 
Sbjct: 269 GTMMAAYAHNGSFEEVLELFDVMRNYDVRMNKVAAASALQAAAYVGNLEKGIAIHEYTVQ 328

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G+ S++ ++ S+I MYSKCG+L+ +  +F +I ++ +VSW+A+I+ + Q G   EAL+ 
Sbjct: 329 QGMMSDISVATSLINMYSKCGELELAEQLFIKIKDRDVVSWSAMIASFEQAGQHDEALSL 388

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           F  M +      +++TL S+L     +AA  +   +H  A +A           +IS Y+
Sbjct: 389 FRDMMRTHFKP-NAVTLTSVLQGCAGVAASRLGKSIHCYAIKADVESELETATAVISMYA 447

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           KCG        FE +  ++D +++N +  GY   G    A  +Y  M   G  PDS T +
Sbjct: 448 KCGLFSPTLKAFERLP-IKDAIAFNALAQGYTQIGDASKAFDVYKNMKLHGVCPDSGTMV 506

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYG-CVVDLLARAGCLSDASGLAGKLL 518
            +L  C        G  ++ Q+I+      S+ H    ++D+  +   L+ A  L  K  
Sbjct: 507 GMLQTCALCSDYARGSCVYGQIIKHG--FDSECHVAHALIDMFTKCDALAAAKSLFDKCG 564

Query: 519 EGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIP-GISFLN 565
                  W  +++G +LH    Q  EA+ +  Q K     P  ++F+N
Sbjct: 565 FEKSTVSWNIMMNGYLLHG---QAEEAIATFRQMKVEKFQPNAVTFVN 609



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 126/500 (25%), Positives = 254/500 (50%), Gaps = 21/500 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + L+  Y K+G +  A  +FD++P K++V+W+ ++ G + NG   ++++ F  M 
Sbjct: 134 DVYIGTALVEMYCKAGDLVSARQVFDKMPVKDIVTWNTMVSGLAQNGCSSEALRLFRDMH 193

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYL-------- 115
            S +  +  ++  ++ A + L+  ++ R +HGL++K G  S    GL + Y         
Sbjct: 194 SSFVDIDHVSLYNLIPAVSKLEKNDVCRCLHGLVIKKGFTSAFSSGLIDMYCKCADLYAA 253

Query: 116 ------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
                        S   ++A + +N  F++ + LF+  R   +  N V   + ++    +
Sbjct: 254 ECVFEEVFSKDESSWGTMMAAYAHNGSFEEVLELFDVMRNYDVRMNKVAAASALQAAAYV 313

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
           G+      IH  T++ G++ D+SV  S+++MYS   +L+ A Q+F +++ +DV+SW+ M+
Sbjct: 314 GNLEKGIAIHEYTVQQGMMSDISVATSLINMYSKCGELELAEQLFIKIKDRDVVSWSAMI 373

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
             F       +AL +FR+M ++    + V L +++   A +   + GK +H   +   ++
Sbjct: 374 ASFEQAGQHDEALSLFRDMMRTHFKPNAVTLTSVLQGCAGVAASRLGKSIHCYAIKADVE 433

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
           SEL  + ++I+MY+KCG    +   F ++  K  +++ A+  GY Q G A +A + +  M
Sbjct: 434 SELETATAVISMYAKCGLFSPTLKAFERLPIKDAIAFNALAQGYTQIGDASKAFDVYKNM 493

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
           +       DS T+V +L      +       ++G   + GF     V + LI  ++KC  
Sbjct: 494 KLHGV-CPDSGTMVGMLQTCALCSDYARGSCVYGQIIKHGFDSECHVAHALIDMFTKCDA 552

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           +  A  +F++ GF +  VSWN ++ GY ++G  E A+A + +M      P++ T+++I+ 
Sbjct: 553 LAAAKSLFDKCGFEKSTVSWNIMMNGYLLHGQAEEAIATFRQMKVEKFQPNAVTFVNIVR 612

Query: 464 ACGHAGLTNDGLVIFNQMIE 483
           A       + G+ + + +I+
Sbjct: 613 AAAELAALSLGMSVHSSLIQ 632



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 155/303 (51%), Gaps = 15/303 (4%)

Query: 147 VPNA-VTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAI 205
           +PN   T+L ++R C     R L + IHG  I  GL      +N +++ YS     D + 
Sbjct: 1   MPNTCTTLLRMLRECKNF--RLLLQ-IHGSLIVAGL----KPHNQLINAYSLFQRPDLSR 53

Query: 206 QIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILG 265
           +I   +    V+ W  M+  +       +AL++F  M +++ I D        ++ A  G
Sbjct: 54  KIVDSVPYPGVVLWNSMIRGYTRAGLHKEALEVFGYMSEAKGI-DPDKYTFTFALKACAG 112

Query: 266 --DLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAI 323
             D + G ++H  +   G +S++ +  +++ MY K GDL S+R VF+++  K +V+W  +
Sbjct: 113 SMDFEEGLRIHDLIAEMGFESDVYIGTALVEMYCKAGDLVSARQVFDKMPVKDIVTWNTM 172

Query: 324 ISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG 383
           +SG  QNGC+ EAL  F  M     D +D ++L +++ A  +L   ++C  LHG+  + G
Sbjct: 173 VSGLAQNGCSSEALRLFRDMHSSFVD-IDHVSLYNLIPAVSKLEKNDVCRCLHGLVIKKG 231

Query: 384 FPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALY 443
           F    +  + LI  Y KC ++  A  VFEE+ F +D  SW T++  Y  NG  E  L L+
Sbjct: 232 FT--SAFSSGLIDMYCKCADLYAAECVFEEV-FSKDESSWGTMMAAYAHNGSFEEVLELF 288

Query: 444 HKM 446
             M
Sbjct: 289 DVM 291


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  248 bits (634), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 162/552 (29%), Positives = 284/552 (51%), Gaps = 28/552 (5%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML-SGL 67
           +KL   +F  G +     LF+++ + ++  ++++I G+S NG  + S+  ++H+   + L
Sbjct: 50  TKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNL 109

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG------------------ 109
            P++FT    + AA+ L++  +   +H   +  G+ S+LF G                  
Sbjct: 110 RPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARK 169

Query: 110 ----LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
               +     V  N +++GF  N  F+ ++ +F      GL  ++ T+ TV+     L  
Sbjct: 170 VFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQE 229

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYS-CLMDLDAAIQIFREMECKDVISWTRMMG 224
             L   I  L  K GL  DV V   ++ +YS C       I +F +++  D+IS+  M+ 
Sbjct: 230 YRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRI-LFDQIDQPDLISYNAMIS 288

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            +        A+ +FRE+  S    ++  L+ LI V      L+  + +    +  G+  
Sbjct: 289 GYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIIL 348

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           +  +S ++  +Y +  ++  +R +F++  EKSL SW A+ISGY QNG    A++ F +M 
Sbjct: 349 QPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMM 408

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
            +   S + +T+ SIL+A  +L AL I   +HG+           V   L+  Y+KCG++
Sbjct: 409 PQL--SPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSI 466

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
             A  +F+ M   ++VV+WN +I GYG++GHG+ AL L+++M ++G  P   T+LSIL A
Sbjct: 467 VEARQLFDLM-VDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYA 525

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C H+GL ++G  IF+ M      +P  EHY C+VD+L RAG L++A     ++    GP 
Sbjct: 526 CSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPA 585

Query: 525 IWRALLSGCVLH 536
           +W ALL  C++H
Sbjct: 586 VWGALLGACMIH 597



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 165/345 (47%), Gaps = 25/345 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + L+S Y K GK  +   LFD+I + +++S++ +I GY+ N   E ++  F  ++
Sbjct: 248 DVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELL 307

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL--------------------- 102
            SG   NS T+VG++       +L+L+R I  L +K G+                     
Sbjct: 308 ASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQ 367

Query: 103 -ESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               LF+      L S NA+++G+  N L  +A+ LF       L PN VT+ +++  C 
Sbjct: 368 FARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACA 426

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            LG+ ++ + +HGL     L  +V V+ +++DMY+    +  A Q+F  M  K+V++W  
Sbjct: 427 QLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNA 486

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQL-HAQVVLG 280
           M+  +    +  +ALK+F EM +S I    V  L+++   +  G +  G ++ H+     
Sbjct: 487 MITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNY 546

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAII 324
           G Q        ++ +  + G L ++     ++  E     W A++
Sbjct: 547 GFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALL 591



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 110/226 (48%), Gaps = 39/226 (17%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           + P  S+ L + Y +  +++ A  LFDE PEK++ SW+ +I GY+ NG  ++++  F  M
Sbjct: 348 LQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEM 407

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
           M   L PN  T+  +L A A L  L + + +HGL+    LES+                 
Sbjct: 408 M-PQLSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSI 466

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                LF+ + +  +V+ NA++ G+  +   ++A+ LF     SG+ P  VT L+++  C
Sbjct: 467 VEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYAC 526

Query: 161 -----VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDL 201
                V+ G+    E+ H +    G          + + Y+C++D+
Sbjct: 527 SHSGLVSEGN----EIFHSMANNYGF-------QPMSEHYACMVDI 561



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 94/195 (48%), Gaps = 1/195 (0%)

Query: 272 QLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNG 331
           Q+ AQ++L G+  +L     +   +   G +   R +FN++++  L  +  +I G+  NG
Sbjct: 32  QIQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNG 91

Query: 332 CAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ 391
             + ++  +  +R++     D+ T    ++A+  L    + + LH  +   G      V 
Sbjct: 92  LPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVG 151

Query: 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE 451
           + ++  Y K    +LA  VF+ M   RD V WNT+I G+  N + E ++ ++  M + G 
Sbjct: 152 SAIVDLYFKFTRAELARKVFDVMP-ERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGL 210

Query: 452 VPDSSTYLSILNACG 466
             DS+T  ++L A  
Sbjct: 211 SFDSTTLATVLTAVA 225


>gi|15229753|ref|NP_190611.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75202753|sp|Q9SCT2.1|PP277_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g50420
 gi|6561982|emb|CAB62471.1| putative protein [Arabidopsis thaliana]
 gi|332645144|gb|AEE78665.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 794

 Score =  248 bits (634), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 166/572 (29%), Positives = 289/572 (50%), Gaps = 32/572 (5%)

Query: 5   PYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSIN-GFHEKSMKAFSHMM 63
           PY ++ L+S Y + G +++A  +FD++P +NVVS++ +   YS N  F   +    +HM 
Sbjct: 132 PYANNNLISMYVRCGSLEQARKVFDKMPHRNVVSYNALYSAYSRNPDFASYAFPLTTHMA 191

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG--------------------LE 103
              + PNS T   ++   A L+++ +  S++  ++K G                    LE
Sbjct: 192 FEYVKPNSSTFTSLVQVCAVLEDVLMGSSLNSQIIKLGYSDNVVVQTSVLGMYSSCGDLE 251

Query: 104 S--DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
           S   +F+ + N   V+ N ++ G + N   +  ++ F     SG+ P   T   V+ GC 
Sbjct: 252 SARRIFDCVNNRDAVAWNTMIVGSLKNDKIEDGLMFFRNMLMSGVDPTQFTYSIVLNGCS 311

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            LGS +L +LIH   I    + D+ ++N++LDMY    D+  A  +F  +   +++SW  
Sbjct: 312 KLGSYSLGKLIHARIIVSDSLADLPLDNALLDMYCSCGDMREAFYVFGRIHNPNLVSWNS 371

Query: 222 MMGLFVDFEYAGDALKIFREM-RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
           ++    +  +   A+ ++R + R S    D       IS  A       GK LH QV   
Sbjct: 372 IISGCSENGFGEQAMLMYRRLLRMSTPRPDEYTFSAAISATAEPERFVHGKLLHGQVTKL 431

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           G +  + +  ++++MY K  + +S++ VF+ + E+ +V WT +I G+ + G +  A+  F
Sbjct: 432 GYERSVFVGTTLLSMYFKNREAESAQKVFDVMKERDVVLWTEMIVGHSRLGNSELAVQFF 491

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
           I+M +EK  S D  +L S++ A  ++A L      H +A   GF    SV   L+  Y K
Sbjct: 492 IEMYREKNRS-DGFSLSSVIGACSDMAMLRQGEVFHCLAIRTGFDCVMSVCGALVDMYGK 550

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
            G  + A  +F  +    D+  WN+++  Y  +G  E AL+ + ++ E G +PD+ TYLS
Sbjct: 551 NGKYETAETIFS-LASNPDLKCWNSMLGAYSQHGMVEKALSFFEQILENGFMPDAVTYLS 609

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           +L AC H G T  G  ++NQM +E  +K   +HY C+V+L+++AG + +A  L  +   G
Sbjct: 610 LLAACSHRGSTLQGKFLWNQM-KEQGIKAGFKHYSCMVNLVSKAGLVDEALELIEQSPPG 668

Query: 521 MG-PNIWRALLSGCV----LHVGRFQDAEALR 547
                +WR LLS CV    L +G +   + L+
Sbjct: 669 NNQAELWRTLLSACVNTRNLQIGLYAAEQILK 700



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 145/546 (26%), Positives = 247/546 (45%), Gaps = 48/546 (8%)

Query: 5   PYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVS---WSIVIHGYSI-NGFHEKSMKAFS 60
           PY ++ L+S Y +   +++A  +FD++P++N+V+    S V    S+ +  H + +K  S
Sbjct: 22  PYANNNLISMYVRCSSLEQARKVFDKMPQRNIVTLFGLSAVFEYVSMGSSLHSQIIKLGS 81

Query: 61  HMMLSGLLPNSF--TMVGVLVAAAGLQNLELARSIHGLMVKFG----------------- 101
             M+  +  N    ++V +      +  L+ AR IH L++  G                 
Sbjct: 82  FQMIFFMPLNEIASSVVELTRKCVSITVLKRARQIHALVLTAGAGAATESPYANNNLISM 141

Query: 102 ------LES--DLFEGLKNPYLVSCNAIVAGFINNKLFQQ-AVLLFNFFRGSGLVPNAVT 152
                 LE    +F+ + +  +VS NA+ + +  N  F   A  L        + PN+ T
Sbjct: 142 YVRCGSLEQARKVFDKMPHRNVVSYNALYSAYSRNPDFASYAFPLTTHMAFEYVKPNSST 201

Query: 153 MLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME 212
             ++++ C  L    +   ++   IKLG   +V V  SVL MYS   DL++A +IF  + 
Sbjct: 202 FTSLVQVCAVLEDVLMGSSLNSQIIKLGYSDNVVVQTSVLGMYSSCGDLESARRIFDCVN 261

Query: 213 CKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVN--AILGDLKRG 270
            +D ++W  M+   +  +   D L  FR M  S +  D       I +N  + LG    G
Sbjct: 262 NRDAVAWNTMIVGSLKNDKIEDGLMFFRNMLMSGV--DPTQFTYSIVLNGCSKLGSYSLG 319

Query: 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
           K +HA++++    ++L L N+++ MY  CGD+  +  VF +I   +LVSW +IISG  +N
Sbjct: 320 KLIHARIIVSDSLADLPLDNALLDMYCSCGDMREAFYVFGRIHNPNLVSWNSIISGCSEN 379

Query: 331 GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV 390
           G   +A+  + ++ +  T   D  T  + ++A+ E         LHG   + G+ R   V
Sbjct: 380 GFGEQAMLMYRRLLRMSTPRPDEYTFSAAISATAEPERFVHGKLLHGQVTKLGYERSVFV 439

Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
              L+S Y K    + A  VF+ M   RDVV W  +I G+   G+ E A+  + +M    
Sbjct: 440 GTTLLSMYFKNREAESAQKVFDVMK-ERDVVLWTEMIVGHSRLGNSELAVQFFIEMYREK 498

Query: 451 EVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
              D  +  S++ AC    +   G V     I           + CV+ +    G L D 
Sbjct: 499 NRSDGFSLSSVIGACSDMAMLRQGEVFHCLAIRTG--------FDCVMSV---CGALVDM 547

Query: 511 SGLAGK 516
            G  GK
Sbjct: 548 YGKNGK 553


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  248 bits (634), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 145/443 (32%), Positives = 241/443 (54%), Gaps = 5/443 (1%)

Query: 98  VKFGLESDL---FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTML 154
           ++FG   D    F+ +++  + + NA+++G   N    +AV LF      G+  +AVT+ 
Sbjct: 115 LRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVS 174

Query: 155 TVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
           +V+  CV LG RAL   +H   +K GL  ++ V N+++D+Y  L  L+   ++F  M  +
Sbjct: 175 SVLPMCVLLGDRALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSR 234

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
           D+++W  ++           A+++F  MR S +  D + LL+L S  A  GD+  G+ +H
Sbjct: 235 DLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVH 294

Query: 275 AQVVLGGLQ-SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA 333
             +V  G    ++   N+I+ MY+K   +++++ +F+ +  +  VSW  +I+GY+QNG A
Sbjct: 295 CYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLA 354

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC 393
            EA++ +  M++ +       T VS+L A   L AL+   ++H ++ + G      V  C
Sbjct: 355 SEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKTGLNLDVYVGTC 414

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           +I  Y+KCG +D A ++FE+    R    WN +I G GV+GHG  AL+L+ +M + G  P
Sbjct: 415 VIDLYAKCGKLDEAMLLFEQTP-RRSTGPWNAVISGVGVHGHGAKALSLFSQMQQEGISP 473

Query: 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL 513
           D  T++S+L AC HAGL + G   FN M     +KP  +HY C+VD+  RAG L DA   
Sbjct: 474 DHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDF 533

Query: 514 AGKLLEGMGPNIWRALLSGCVLH 536
              +       IW ALL  C +H
Sbjct: 534 IRNMPIKPDSAIWGALLGACRIH 556



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 112/459 (24%), Positives = 220/459 (47%), Gaps = 26/459 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + S  L+  Y + G++++A   FDE+  ++V +W+ ++ G   N    +++  F  M+
Sbjct: 103 DAFASGALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMV 162

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------- 106
           + G+  ++ T+  VL     L +  LA ++H   VK GL+ +L                 
Sbjct: 163 MEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLE 222

Query: 107 -----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                F+G+ +  LV+ N+I++G         AV +F   R SG+ P+ +T+L++     
Sbjct: 223 EVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIA 282

Query: 162 ALGSRALCELIHGLTIKLGL-ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             G       +H   ++ G  + D+   N+++DMY+ L  ++AA ++F  M  +D +SW 
Sbjct: 283 QCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWN 342

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTV-ALLNLISVNAILGDLKRGKQLHAQVVL 279
            ++  ++    A +A+ ++  M+K   +       ++++   + LG L++G ++HA  + 
Sbjct: 343 TLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIK 402

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            GL  ++ +   +I +Y+KCG LD +  +F Q   +S   W A+ISG   +G   +AL+ 
Sbjct: 403 TGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGVGVHGHGAKALSL 462

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEA-GFPRYRSVQNCLISSY 398
           F +M+QE   S D +T VS+L A      ++       +   A G         C++  +
Sbjct: 463 FSQMQQEGI-SPDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKPIAKHYACMVDMF 521

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGE 437
            + G +D A+     M    D   W  ++    ++G+ E
Sbjct: 522 GRAGQLDDAFDFIRNMPIKPDSAIWGALLGACRIHGNVE 560



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 68/339 (20%), Positives = 141/339 (41%), Gaps = 41/339 (12%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D Y  + ++  Y K GK+ EA  LF++ P ++   W+ VI G  ++G   K++  FS M
Sbjct: 407 LDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGVGVHGHGAKALSLFSQM 466

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLM-VKFGLESDLFEGLKNPYLVSCNAI 121
              G+ P+  T V +L A +    ++  R+   +M   +G++         P       +
Sbjct: 467 QQEGISPDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIK---------PIAKHYACM 517

Query: 122 VAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC-----VALGSRALCELIHGLT 176
           V  F        A   F+F R   + P++     ++  C     V +G  A   L     
Sbjct: 518 VDMFGRAGQLDDA---FDFIRNMPIKPDSAIWGALLGACRIHGNVEMGKVASQNLFELDP 574

Query: 177 IKLGLILDVSVNNSVLDMYSCLMDLDAAIQI---FREMECKDVISWTRM-MGLFVDFEYA 232
             +G  + +S      +MY+ +   D   ++    R    +    W+ + +   V+  Y+
Sbjct: 575 KNVGYYVLMS------NMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYS 628

Query: 233 GDALKIFREMRK-SRIICDTVALLN----LISVNAILGDLKRGKQL-----HAQ---VVL 279
           G+ + I  +  +  R + D +A +     +   + +L D++  ++      H++   +  
Sbjct: 629 GNQMNIHPQHEEIQRELLDLLAKIRSLGYVPDYSFVLQDVEEDEKEQILNNHSERLAIAF 688

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLV 318
           G + +  R    I      CGD  ++    ++ITE+ ++
Sbjct: 689 GIINTPPRTPLHIYKNLRVCGDCHNATKYISKITEREII 727


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  248 bits (634), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 164/568 (28%), Positives = 279/568 (49%), Gaps = 33/568 (5%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS-GL 67
           +KL       G I  A ++F  +   +V  +++++ G+S+N     S+  F+H+  S  L
Sbjct: 56  TKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLAVFAHLRKSTDL 115

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL--------------------- 106
            PNS T    + AA+G ++      IHG  +  G +S+L                     
Sbjct: 116 KPNSSTYAFAISAASGFRDDRAGCVIHGQAIVDGCDSELLLGSNIVKMYFKFWRVEDARK 175

Query: 107 -FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLF-NFFRGSGLVPNAVTMLTVIRGCVALG 164
            F+ +     +  N +++G+  N+++ +++ +F +    S    +  T+L ++     L 
Sbjct: 176 VFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQ 235

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
              L   IH L  K G      V    + +YS    +  A  +FRE    D++++  M+ 
Sbjct: 236 ELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIH 295

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            +        +L +F+E+  S     +  L++L+ V+   G L     +H   +     S
Sbjct: 296 GYTSNGETELSLSLFKELMLSGAKLKSSTLVSLVPVS---GHLMLIYAIHGYSLKSNFLS 352

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
              +S ++  +YSK  +++S+R +F++  EKSL SW A+ISGY QNG   +A++ F +M 
Sbjct: 353 HTSVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREM- 411

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
           Q    S + +T+  IL+A  +L AL +   +H +     F     V   LI  Y+KCG++
Sbjct: 412 QNSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSI 471

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
             A  +F+ M   ++ V+WNT+I GYG++GHG+ AL ++ +M  +G  P   T+L +L A
Sbjct: 472 AEARRLFDFMP-KKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFLCVLYA 530

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C HAGL  +G  IFN MI     +PS +HY CVVD+L RAG L  A      +    GP+
Sbjct: 531 CSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACVVDILGRAGHLQRALQFIEAMPIQPGPS 590

Query: 525 IWRALLSGCVLHVGRFQDAEALRSGSQK 552
           +W  LL  C +H    +D    R+ S+K
Sbjct: 591 VWETLLGACRIH----KDTNLARTVSEK 614



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 124/483 (25%), Positives = 227/483 (46%), Gaps = 38/483 (7%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM-LSGL 67
           S ++  YFK  ++++A  +FD +PEK+ + W+ +I GY  N  + +S++ F  ++  S  
Sbjct: 158 SNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCT 217

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG----------------------LESD 105
             ++ T++ +L A A LQ L L   IH L  K G                      + S 
Sbjct: 218 RLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMAST 277

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           LF   + P +V+ NA++ G+ +N   + ++ LF     SG    + T+++++      G 
Sbjct: 278 LFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVSLV---PVSGH 334

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
             L   IHG ++K   +   SV+ ++  +YS L ++++A ++F E   K + SW  M+  
Sbjct: 335 LMLIYAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISG 394

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +       DA+ +FREM+ S    + V +  ++S  A LG L  GK +H  V     +S 
Sbjct: 395 YTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESS 454

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           + +S ++I MY+KCG +  +R +F+ + +K+ V+W  +ISGY  +G  +EAL  F +M  
Sbjct: 455 IYVSTALIGMYAKCGSIAEARRLFDFMPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLN 514

Query: 346 EKTDSVDSITLVSILTASGELAALE-----ICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
               +   +T + +L A      ++         +H   FE     Y     C++    +
Sbjct: 515 SGI-APTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHY----ACVVDILGR 569

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
            G++  A    E M        W T++    ++     A  +  K+ E    PD+  Y  
Sbjct: 570 AGHLQRALQFIEAMPIQPGPSVWETLLGACRIHKDTNLARTVSEKLFELD--PDNVGYHV 627

Query: 461 ILN 463
           +L+
Sbjct: 628 LLS 630



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 107/241 (44%), Gaps = 24/241 (9%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ L + Y K  +I+ A  LFDE PEK++ SW+ +I GY+ NG  E ++  F  M  S  
Sbjct: 357 STALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEF 416

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
            PN  T+  +L A A L  L L + +H L+     ES                       
Sbjct: 417 SPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARR 476

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG- 164
           LF+ +     V+ N +++G+  +   Q+A+ +F+    SG+ P  VT L V+  C   G 
Sbjct: 477 LFDFMPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFLCVLYACSHAGL 536

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS-WTRMM 223
            +   E+ + +  + G    V     V+D+      L  A+Q    M  +   S W  ++
Sbjct: 537 VKEGDEIFNSMIHRYGFEPSVKHYACVVDILGRAGHLQRALQFIEAMPIQPGPSVWETLL 596

Query: 224 G 224
           G
Sbjct: 597 G 597



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 58/102 (56%), Gaps = 1/102 (0%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y S+ L+  Y K G I EA  LFD +P+KN V+W+ +I GY ++G  ++++  FS M+ S
Sbjct: 456 YVSTALIGMYAKCGSIAEARRLFDFMPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNS 515

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMV-KFGLESDL 106
           G+ P   T + VL A +    ++    I   M+ ++G E  +
Sbjct: 516 GIAPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSV 557



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 93/215 (43%), Gaps = 8/215 (3%)

Query: 257 LISVNAILGDLKRGK------QLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFN 310
           LIS N  L   KR        Q HAQ+VL G ++++ L   +    S  G +  +R +F 
Sbjct: 17  LISKNNFLDLFKRSTSISHLAQTHAQIVLHGFRNDISLLTKLTQRLSDLGAIYYARDIFL 76

Query: 311 QITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALE 370
            +    +  +  ++ G+  N     +L  F  +R+      +S T    ++A+       
Sbjct: 77  SVQRPDVFLFNVLMRGFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFRDDR 136

Query: 371 ICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGY 430
               +HG A   G      + + ++  Y K   V+ A  VF+ M   +D + WNT+I GY
Sbjct: 137 AGCVIHGQAIVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMP-EKDTILWNTMISGY 195

Query: 431 GVNGHGETALALYHKM-TETGEVPDSSTYLSILNA 464
             N     ++ ++  +  E+    D++T L IL A
Sbjct: 196 RKNEMYVESIQVFRDLINESCTRLDTTTLLDILPA 230


>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
 gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
          Length = 822

 Score =  248 bits (634), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 161/563 (28%), Positives = 284/563 (50%), Gaps = 43/563 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPE-KNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           D   ++ LL+ Y + G +  A N+FD +   +++VSW+ +    + NG   +S+     M
Sbjct: 83  DAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLARNGAERESLLLIGEM 142

Query: 63  MLSGLLPNSFTMVGVLVA-------------------AAGLQNLELA--RSIHGLMVKFG 101
           + SGLLPN++T+  V  A                     GL   ++A   ++  ++ + G
Sbjct: 143 LESGLLPNAYTLCAVAHACFPHELYCLVGGVVLGLVHKMGLWGTDIAVGSALIDMLARNG 202

Query: 102 ---LESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                  +F+GL    +V    +++ ++  +  ++AV +F  F   G  P+  TM ++I 
Sbjct: 203 DLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIFLDFLEDGFEPDRYTMSSMIS 262

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYS---CLMDLDAAIQIFREMECKD 215
            C  LGS  L   +H L +++G   D  V+  ++DMY+       +D A ++F  M   D
Sbjct: 263 ACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAKSNIEQAMDYANKVFERMRKND 322

Query: 216 VISWTRMMGLFVDFEYAGDALKI-FREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
           VISWT ++  +V      + + + F EM    I  + +   +++   A + D   G+Q+H
Sbjct: 323 VISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHITYSSILKACANISDHDSGRQVH 382

Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
           A V+     +   + N++++MY++ G ++ +R VFNQ+ E+S++S            C  
Sbjct: 383 AHVIKSNQAAAHTVGNALVSMYAESGCMEEARRVFNQLYERSMIS------------CIT 430

Query: 335 EALNQFIKMRQEKTD-SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC 393
           E  +  +  R  + D  + S T  S+++A+  +  L    QLH +  +AGF   R V N 
Sbjct: 431 EGRDAPLDHRIGRMDMGISSSTFASLISAAASVGMLTKGQQLHAMTLKAGFGSDRFVSNS 490

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           L+S YS+CG ++ A   F E+   R+V+SW ++I G   +G+ E AL+L+H M  TG  P
Sbjct: 491 LVSMYSRCGYLEDACRSFNELKD-RNVISWTSMISGLAKHGYAERALSLFHDMILTGVKP 549

Query: 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL 513
           +  TY+++L+AC H GL  +G   F  M  ++ + P  EHY C+VDLLAR+G + +A   
Sbjct: 550 NDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGLVKEALEF 609

Query: 514 AGKLLEGMGPNIWRALLSGCVLH 536
             ++       +W+ LL  C  H
Sbjct: 610 INEMPLKADALVWKTLLGACRSH 632



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 132/298 (44%), Gaps = 53/298 (17%)

Query: 265 GDLKRGKQLHAQVVLGGL-QSELRLSNSIIAMYSKCGDLDSSRSVFNQITE-KSLVSWTA 322
           GDL+ G+ LH +++ G L   +  ++NS++ +YS+CG + S+R+VF+ +   + +VSWTA
Sbjct: 62  GDLRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTA 121

Query: 323 IISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELA-ALEICLQLHGIAFE 381
           + S   +NG  RE                 S+ L+  +  SG L  A  +C   H     
Sbjct: 122 MASCLARNGAERE-----------------SLLLIGEMLESGLLPNAYTLCAVAH----- 159

Query: 382 AGFPRYR----------------------SVQNCLISSYSKCGNVDLAYIVFEEMGFLRD 419
           A FP                         +V + LI   ++ G++  A  VF+ +   + 
Sbjct: 160 ACFPHELYCLVGGVVLGLVHKMGLWGTDIAVGSALIDMLARNGDLASARKVFDGL-IEKT 218

Query: 420 VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFN 479
           VV W  +I  Y      E A+ ++    E G  PD  T  S+++AC   G    GL + +
Sbjct: 219 VVVWTLLISRYVQGECAEEAVEIFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHS 278

Query: 480 QMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN---IWRALLSGCV 534
             +       +    G +VD+ A++  +  A   A K+ E M  N    W AL+SG V
Sbjct: 279 LALRMGFASDACVSCG-LVDMYAKSN-IEQAMDYANKVFERMRKNDVISWTALISGYV 334


>gi|356495733|ref|XP_003516728.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Glycine max]
          Length = 770

 Score =  248 bits (634), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 168/634 (26%), Positives = 305/634 (48%), Gaps = 100/634 (15%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  + ++ + +L+ Y K+  ++ A  LF ++P++N VS + +I      G+  +++  + 
Sbjct: 68  PHKNIFSWNAILAAYCKARNLQYACRLFLQMPQRNTVSLNTLISTMVRCGYERQALDTYD 127

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL-------------- 106
            +ML G++P+  T   V  A   L + +  R  HG+++K GLES++              
Sbjct: 128 SVMLDGVIPSHITFATVFSACGSLLDADCGRRTHGVVIKVGLESNIYVVNALLCMYAKCG 187

Query: 107 --------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI- 157
                   F  +  P  V+   ++ G       ++A  LF      G+  ++V++ +++ 
Sbjct: 188 LNADALRVFRDIPEPNEVTFTTMMGGLAQTNQIKEAAELFRLMLRKGIRVDSVSLSSMLG 247

Query: 158 ---RG------CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIF 208
              +G      C  + + A  + +H L++KLG   D+ + NS+LDMY+ + D+D+A ++F
Sbjct: 248 VCAKGERDVGPCHGISTNAQGKQMHTLSVKLGFERDLHLCNSLLDMYAKIGDMDSAEKVF 307

Query: 209 REMECKDVISWTRMM---GLFVDFEYAGDALKIFR----------------------EMR 243
             +    V+SW  M+   G   + E A + L+  +                      ++R
Sbjct: 308 VNLNRHSVVSWNIMIAGYGNRCNSEKAAEYLQRMQSDGYEPDDVTYINMLTACVKSGDVR 367

Query: 244 KSRIICDTVALLNLISVNAI---------------------------------------- 263
             R I D +   +L S NAI                                        
Sbjct: 368 TGRQIFDCMPCPSLTSWNAILSGYNQNADHREAVELFRKMQFQCQHPDRTTLAVILSSCA 427

Query: 264 -LGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTA 322
            LG L+ GK++HA     G   ++ +++S+I +YSKCG ++ S+ VF+++ E  +V W +
Sbjct: 428 ELGFLEAGKEVHAASQKFGFYDDVYVASSLINVYSKCGKMELSKHVFSKLPELDVVCWNS 487

Query: 323 IISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEA 382
           +++G+  N   ++AL+ F KMRQ      +  +  +++++  +L++L    Q H    + 
Sbjct: 488 MLAGFSINSLGQDALSFFKKMRQLGFFPSE-FSFATVVSSCAKLSSLFQGQQFHAQIVKD 546

Query: 383 GFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALAL 442
           GF     V + LI  Y KCG+V+ A   F+ M   R+ V+WN +I+GY  NG G  AL L
Sbjct: 547 GFLDDIFVGSSLIEMYCKCGDVNGARCFFDVMPG-RNTVTWNEMIHGYAQNGDGHNALCL 605

Query: 443 YHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLA 502
           Y+ M  +GE PD  TY+++L AC H+ L ++GL IFN M+++  V P   HY C++D L+
Sbjct: 606 YNDMISSGEKPDDITYVAVLTACSHSALVDEGLEIFNAMLQKYGVVPKVAHYTCIIDCLS 665

Query: 503 RAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
           RAG  ++   +   +       +W  +LS C +H
Sbjct: 666 RAGRFNEVEVILDAMPCKDDAVVWEVVLSSCRIH 699



 Score =  181 bits (459), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 130/493 (26%), Positives = 230/493 (46%), Gaps = 31/493 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + LL  Y K G +  AE +F  +   +VVSW+I+I GY      EK+ +    M 
Sbjct: 283 DLHLCNSLLDMYAKIGDMDSAEKVFVNLNRHSVVSWNIMIAGYGNRCNSEKAAEYLQRMQ 342

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVA 123
             G  P+  T + +L A     ++   R I             F+ +  P L S NAI++
Sbjct: 343 SDGYEPDDVTYINMLTACVKSGDVRTGRQI-------------FDCMPCPSLTSWNAILS 389

Query: 124 GFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLIL 183
           G+  N   ++AV LF   +     P+  T+  ++  C  LG     + +H  + K G   
Sbjct: 390 GYNQNADHREAVELFRKMQFQCQHPDRTTLAVILSSCAELGFLEAGKEVHAASQKFGFYD 449

Query: 184 DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMR 243
           DV V +S++++YS    ++ +  +F ++   DV+ W  M+  F       DAL  F++MR
Sbjct: 450 DVYVASSLINVYSKCGKMELSKHVFSKLPELDVVCWNSMLAGFSINSLGQDALSFFKKMR 509

Query: 244 KSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLD 303
           +        +   ++S  A L  L +G+Q HAQ+V  G   ++ + +S+I MY KCGD++
Sbjct: 510 QLGFFPSEFSFATVVSSCAKLSSLFQGQQFHAQIVKDGFLDDIFVGSSLIEMYCKCGDVN 569

Query: 304 SSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTAS 363
            +R  F+ +  ++ V+W  +I GY QNG    AL  +  M     +  D IT V++LTA 
Sbjct: 570 GARCFFDVMPGRNTVTWNEMIHGYAQNGDGHNALCLYNDM-ISSGEKPDDITYVAVLTAC 628

Query: 364 GELAALEICLQLHGIAFEAGFPRYRSVQ-----NCLISSYSKCGNVDLAYIVFEEMGFLR 418
              A ++  L++    F A   +Y  V       C+I   S+ G  +   ++ + M    
Sbjct: 629 SHSALVDEGLEI----FNAMLQKYGVVPKVAHYTCIIDCLSRAGRFNEVEVILDAMPCKD 684

Query: 419 DVVSWNTIIYGYGVNGHGETALALYHKMTET---GEVPDSSTYLSILNACGHAGLTNDGL 475
           D V W  ++    ++ +    L+L  +  E     +  +S++Y+ + N     G  +D  
Sbjct: 685 DAVVWEVVLSSCRIHAN----LSLAKRAAEELYRLDPQNSASYVLLANMYSSLGKWDDAH 740

Query: 476 VIFNQMIEENKVK 488
           V+   ++  N+V+
Sbjct: 741 VV-RDLMSHNQVR 752



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 96/377 (25%), Positives = 170/377 (45%), Gaps = 51/377 (13%)

Query: 150 AVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFR 209
           ++ +  +++ C+   +    +++H    +L L  D  ++N  +++YS    + +A  +F 
Sbjct: 6   SLNLANLVQHCITNKAHLSGKVVHARLFRLALFSDTFLSNHFIELYSKCDHIASACHVFD 65

Query: 210 EMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILG---- 265
            +  K++ SW  ++  +        A ++F +M +     +TV+L  LIS     G    
Sbjct: 66  NIPHKNIFSWNAILAAYCKARNLQYACRLFLQMPQR----NTVSLNTLISTMVRCGYERQ 121

Query: 266 -------------------------------DLKRGKQLHAQVVLGGLQSELRLSNSIIA 294
                                          D   G++ H  V+  GL+S + + N+++ 
Sbjct: 122 ALDTYDSVMLDGVIPSHITFATVFSACGSLLDADCGRRTHGVVIKVGLESNIYVVNALLC 181

Query: 295 MYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSI 354
           MY+KCG    +  VF  I E + V++T ++ G  Q    +EA   F ++   K   VDS+
Sbjct: 182 MYAKCGLNADALRVFRDIPEPNEVTFTTMMGGLAQTNQIKEAAELF-RLMLRKGIRVDSV 240

Query: 355 TLVSIL--TASGE--------LAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
           +L S+L   A GE        ++      Q+H ++ + GF R   + N L+  Y+K G++
Sbjct: 241 SLSSMLGVCAKGERDVGPCHGISTNAQGKQMHTLSVKLGFERDLHLCNSLLDMYAKIGDM 300

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           D A  VF  +     VVSWN +I GYG   + E A     +M   G  PD  TY+++L A
Sbjct: 301 DSAEKVFVNLN-RHSVVSWNIMIAGYGNRCNSEKAAEYLQRMQSDGYEPDDVTYINMLTA 359

Query: 465 CGHAGLTNDGLVIFNQM 481
           C  +G    G  IF+ M
Sbjct: 360 CVKSGDVRTGRQIFDCM 376


>gi|225450537|ref|XP_002277327.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570 [Vitis vinifera]
          Length = 607

 Score =  248 bits (634), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 142/438 (32%), Positives = 229/438 (52%), Gaps = 4/438 (0%)

Query: 101 GLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
           G    LF+ +    +V+   ++AG+ +      A ++F       L PNA T+ +V++ C
Sbjct: 60  GEARTLFDEMPERDVVAWTVMIAGYTSCNNHTHAWMVFCEMMNEELDPNAFTISSVLKAC 119

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMY-SCLMDLDAAIQIFREMECKDVISW 219
             +   +   L+HGL IK GL   + V+N+++DMY +C + +D A  +FR +  K+ +SW
Sbjct: 120 KGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATCCVSMDDACMVFRGIHLKNEVSW 179

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           T ++  +   +     L++FR+M    +  +  +    +     +G    G+QLHA V  
Sbjct: 180 TTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRACTSIGSHTFGEQLHAAVTK 239

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G +S L + NSI+ MY +C     +   F ++ ++ L++W  +I+GY ++    E+L  
Sbjct: 240 HGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLITWNTLIAGYERSN-PTESLYV 298

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           F  M  E   S +  T  SI+ A   LA L    Q+HG     G     ++ N LI  YS
Sbjct: 299 FSMMESEGF-SPNCFTFTSIMAACATLAFLNCGQQIHGRIIRRGLDGNLALSNALIDMYS 357

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           KCGN+  ++ VF  M   RD+VSW  ++ GYG +G+GE A+ L+ KM  +G  PD   ++
Sbjct: 358 KCGNIADSHQVFGGMS-RRDLVSWTAMMIGYGTHGYGEEAVELFDKMVRSGIRPDRVVFM 416

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519
           +IL+AC HAGL ++GL  F  M+ +  + P QE YGCVVDLL RAG + +A  L   +  
Sbjct: 417 AILSACSHAGLVDEGLRYFKLMVGDYNISPDQEIYGCVVDLLGRAGKVEEAYELIESMPF 476

Query: 520 GMGPNIWRALLSGCVLHV 537
                +W   L  C  H 
Sbjct: 477 KPDECVWGPFLGACKAHT 494



 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 124/444 (27%), Positives = 211/444 (47%), Gaps = 26/444 (5%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ L+ +YF  G I EA  LFDE+PE++VV+W+++I GY+    H  +   F  MM   L
Sbjct: 46  ATTLIKSYFGKGLIGEARTLFDEMPERDVVAWTVMIAGYTSCNNHTHAWMVFCEMMNEEL 105

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL--------------------- 106
            PN+FT+  VL A  G++ L   R +HGL +K GL+  +                     
Sbjct: 106 DPNAFTISSVLKACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATCCVSMDDAC 165

Query: 107 --FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
             F G+     VS   ++AG+ +       + +F       +  N  +    +R C ++G
Sbjct: 166 MVFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRACTSIG 225

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
           S    E +H    K G   ++ V NS+LDMY        A + F EM  +D+I+W  ++ 
Sbjct: 226 SHTFGEQLHAAVTKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLITWNTLIA 285

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            + +     ++L +F  M       +     ++++  A L  L  G+Q+H +++  GL  
Sbjct: 286 GY-ERSNPTESLYVFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRRGLDG 344

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
            L LSN++I MYSKCG++  S  VF  ++ + LVSWTA++ GY  +G   EA+  F KM 
Sbjct: 345 NLALSNALIDMYSKCGNIADSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVELFDKMV 404

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAF-EAGFPRYRSVQNCLISSYSKCGN 403
           +      D +  ++IL+A      ++  L+   +   +      + +  C++    + G 
Sbjct: 405 RSGIRP-DRVVFMAILSACSHAGLVDEGLRYFKLMVGDYNISPDQEIYGCVVDLLGRAGK 463

Query: 404 VDLAYIVFEEMGFLRDVVSWNTII 427
           V+ AY + E M F  D   W   +
Sbjct: 464 VEEAYELIESMPFKPDECVWGPFL 487



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 112/230 (48%), Gaps = 14/230 (6%)

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
           L+ ++I  Y   G +  +R++F+++ E+ +V+WT +I+GY        A   F +M  E+
Sbjct: 45  LATTLIKSYFGKGLIGEARTLFDEMPERDVVAWTVMIAGYTSCNNHTHAWMVFCEMMNEE 104

Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG-NVDL 406
            D  ++ T+ S+L A   +  L     +HG+A + G   +  V N L+  Y+ C  ++D 
Sbjct: 105 LDP-NAFTISSVLKACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATCCVSMDD 163

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM-TETGEVPDSSTYLSILNAC 465
           A +VF  +  L++ VSW T+I GY     G   L ++ +M  E  E+   S  +++  AC
Sbjct: 164 ACMVFRGI-HLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAV-RAC 221

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEH----YGCVVDLLARAGCLSDAS 511
                T+ G   F + +     K   E        ++D+  R  C S+A+
Sbjct: 222 -----TSIGSHTFGEQLHAAVTKHGFESNLPVMNSILDMYCRCSCFSEAN 266


>gi|357120534|ref|XP_003561982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Brachypodium distachyon]
          Length = 989

 Score =  248 bits (633), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 161/614 (26%), Positives = 299/614 (48%), Gaps = 60/614 (9%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           S L+S Y K G++  A++LFD   EKN + W+ +I GY +N     ++  F  M +  + 
Sbjct: 381 SALVSMYSKLGELDSAKHLFDSCTEKNNLLWNSIISGYLVNNEWNMALDTFCKMQIENVA 440

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------L 106
           P++ T++ V+     +++L +A+SIH   V+   E +                      L
Sbjct: 441 PDATTVIKVIYGCRHIKDLRMAKSIHAYAVRNRFELNQSVMNALLAMYGDCGELSSSYKL 500

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           F+ ++   L+S N I++G+   +  + +V LF   R  GL  + VT++ +I         
Sbjct: 501 FQKMEVRMLISWNTIISGYAEIRDLEASVKLFFQMRQEGLQFDVVTLIGLISSISVAEDT 560

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
            + E +H L +K G  +D+S+ N+++ MYS    ++A  ++F  +  ++ +S+  +M  +
Sbjct: 561 TVGESLHSLAVKSGCNMDISLTNTLITMYSNCGSVEACQRLFDNLSSRNTVSYNVLMTGY 620

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
                + + L +FR+M K+    + + +LNL+ V     + ++GK +H   +      E 
Sbjct: 621 RKNNLSEEILPLFRQMVKNEQEPNHITVLNLLPV---CQNHQQGKSVHCYAIRNFSTLET 677

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
               S I MYS+  ++D S  +FN + E++++ W AI+S  VQ   A  A + F +M   
Sbjct: 678 SFFTSAICMYSRFNNVDYSCKLFNSVGERNIIVWNAILSACVQCKLADTAFDFFRQMHFL 737

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
                D +T++S+++A  +L   ++   +  +  + GF     V N LI  +S+CG++  
Sbjct: 738 NMKP-DEVTMMSLVSACAQLGNSDLGECVTALILQKGFGGTLLVVNALIDMHSRCGSLSF 796

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           A  +F+    ++D V+W+ +I  Y ++G  E+ALA++  M ++G  PD  T++ IL+AC 
Sbjct: 797 ARELFDS-SVVKDSVTWSAMINSYSMHGDCESALAIFSMMIDSGVKPDDITFVIILSACS 855

Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIW 526
           H+G       +F  +  ++ + P  EHY C+VDLL R+G L +A  +   +      ++ 
Sbjct: 856 HSGFVEQARALFKSLQIDHGITPRMEHYACMVDLLGRSGHLDEAYDVVRSMSFRPSESLL 915

Query: 527 RALLSGCVLH---------------------------------VGRFQDAEALRSGSQKK 553
            +LL  C  H                                 VG++ D E LR   + K
Sbjct: 916 ESLLGACRFHGNSKIGEAVGNLLIDSQHGNPRSYVMLSNIYASVGKWNDYEWLRVDMEAK 975

Query: 554 GIIKIPGISFLNST 567
           G+ K  G+S +  T
Sbjct: 976 GLRKDAGVSLVGPT 989



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 132/525 (25%), Positives = 255/525 (48%), Gaps = 28/525 (5%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+S Y     +  +  LFD    K++VS++ +I  Y  +G  ++S   F  M  +GL PN
Sbjct: 282 LISLYAALDDLSSSRVLFDLQHVKDLVSYNSMISAYMQHGKWKESFDVFRQMHCAGLGPN 341

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFE 108
             T++ VL   +    + L  S+HG+++KFGL                         LF+
Sbjct: 342 LVTVISVLPTCSDFFGVNLGDSVHGMVIKFGLAEQISVVSALVSMYSKLGELDSAKHLFD 401

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
                  +  N+I++G++ N  +  A+  F   +   + P+A T++ VI GC  +    +
Sbjct: 402 SCTEKNNLLWNSIISGYLVNNEWNMALDTFCKMQIENVAPDATTVIKVIYGCRHIKDLRM 461

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
            + IH   ++    L+ SV N++L MY    +L ++ ++F++ME + +ISW  ++  + +
Sbjct: 462 AKSIHAYAVRNRFELNQSVMNALLAMYGDCGELSSSYKLFQKMEVRMLISWNTIISGYAE 521

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
                 ++K+F +MR+  +  D V L+ LIS  ++  D   G+ LH+  V  G   ++ L
Sbjct: 522 IRDLEASVKLFFQMRQEGLQFDVVTLIGLISSISVAEDTTVGESLHSLAVKSGCNMDISL 581

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
           +N++I MYS CG +++ + +F+ ++ ++ VS+  +++GY +N  + E L  F +M + + 
Sbjct: 582 TNTLITMYSNCGSVEACQRLFDNLSSRNTVSYNVLMTGYRKNNLSEEILPLFRQMVKNEQ 641

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
           +  + IT++++L         +    +H  A         S     I  YS+  NVD + 
Sbjct: 642 EP-NHITVLNLLPVCQNHQQGK---SVHCYAIRNFSTLETSFFTSAICMYSRFNNVDYSC 697

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
            +F  +G  R+++ WN I+         +TA   + +M      PD  T +S+++AC   
Sbjct: 698 KLFNSVG-ERNIIVWNAILSACVQCKLADTAFDFFRQMHFLNMKPDEVTMMSLVSACAQL 756

Query: 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL 513
           G ++ G  +   +I +     +      ++D+ +R G LS A  L
Sbjct: 757 GNSDLGECV-TALILQKGFGGTLLVVNALIDMHSRCGSLSFAREL 800



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 120/490 (24%), Positives = 244/490 (49%), Gaps = 28/490 (5%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEK--NVVSWSIVIHGYSINGFHEKSMKAFSHMMLSG 66
           + ++  Y   G+   A ++F     +   V S ++ +  +S +GFH + +  +  +   G
Sbjct: 78  TAVVDRYLSFGRPASAASVFAGAYRRRPTVYSLNLAVRCFSDHGFHRELLDLYRTLCTFG 137

Query: 67  LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL-------------------- 106
              ++FT   V+ A A +  L L R +H  +++ G E ++                    
Sbjct: 138 --SDNFTFPPVIKACAAVSCLPLGREMHCRVLRTGHEGNVGVQTALLDMYAKAGWIGASR 195

Query: 107 --FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
             F+ +    L+S NA+++G+  N   ++AV      +  G+  NA T++ +   C A G
Sbjct: 196 TVFDFMGQKDLISWNAMISGYSLNGSLREAVEATQEMQQDGMRANASTLVCIAGACGAAG 255

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
                  +H   +K G++ D S+  +++ +Y+ L DL ++  +F     KD++S+  M+ 
Sbjct: 256 DSDAGGSLHAFALKCGVLGDESLAPALISLYAALDDLSSSRVLFDLQHVKDLVSYNSMIS 315

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            ++      ++  +FR+M  + +  + V +++++   +    +  G  +H  V+  GL  
Sbjct: 316 AYMQHGKWKESFDVFRQMHCAGLGPNLVTVISVLPTCSDFFGVNLGDSVHGMVIKFGLAE 375

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           ++ + +++++MYSK G+LDS++ +F+  TEK+ + W +IISGY+ N     AL+ F KM+
Sbjct: 376 QISVVSALVSMYSKLGELDSAKHLFDSCTEKNNLLWNSIISGYLVNNEWNMALDTFCKMQ 435

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
            E   + D+ T++ ++     +  L +   +H  A    F   +SV N L++ Y  CG +
Sbjct: 436 IENV-APDATTVIKVIYGCRHIKDLRMAKSIHAYAVRNRFELNQSVMNALLAMYGDCGEL 494

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
             +Y +F++M  +R ++SWNTII GY      E ++ L+ +M + G   D  T + ++++
Sbjct: 495 SSSYKLFQKME-VRMLISWNTIISGYAEIRDLEASVKLFFQMRQEGLQFDVVTLIGLISS 553

Query: 465 CGHAGLTNDG 474
              A  T  G
Sbjct: 554 ISVAEDTTVG 563



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 75/332 (22%), Positives = 152/332 (45%), Gaps = 32/332 (9%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ L++ Y   G ++  + LFD +  +N VS+++++ GY  N   E+ +  F  M+ +  
Sbjct: 582 TNTLITMYSNCGSVEACQRLFDNLSSRNTVSYNVLMTGYRKNNLSEEILPLFRQMVKNEQ 641

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVK--FGLESD-------------------- 105
            PN  T++ +L      QN +  +S+H   ++    LE+                     
Sbjct: 642 EPNHITVLNLLPVC---QNHQQGKSVHCYAIRNFSTLETSFFTSAICMYSRFNNVDYSCK 698

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGS---GLVPNAVTMLTVIRGCVA 162
           LF  +    ++  NAI++  +  KL   A   F+FFR      + P+ VTM++++  C  
Sbjct: 699 LFNSVGERNIIVWNAILSACVQCKLADTA---FDFFRQMHFLNMKPDEVTMMSLVSACAQ 755

Query: 163 LGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
           LG+  L E +  L ++ G    + V N+++DM+S    L  A ++F     KD ++W+ M
Sbjct: 756 LGNSDLGECVTALILQKGFGGTLLVVNALIDMHSRCGSLSFARELFDSSVVKDSVTWSAM 815

Query: 223 MGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG-G 281
           +  +        AL IF  M  S +  D +  + ++S  +  G +++ + L   + +  G
Sbjct: 816 INSYSMHGDCESALAIFSMMIDSGVKPDDITFVIILSACSHSGFVEQARALFKSLQIDHG 875

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT 313
           +   +     ++ +  + G LD +  V   ++
Sbjct: 876 ITPRMEHYACMVDLLGRSGHLDEAYDVVRSMS 907


>gi|356567156|ref|XP_003551787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  248 bits (632), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 161/563 (28%), Positives = 268/563 (47%), Gaps = 25/563 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D    S L+  Y K  K+ +A  +F E+PE+N+V WS VI GY  N    + +K F  M+
Sbjct: 172 DVVTGSALVDMYSKCKKLDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDML 231

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
             G+  +  T   V  + AGL   +L   +HG  +K     D                  
Sbjct: 232 KVGMGVSQSTYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMF 291

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +F  L NP   S NAI+ G+       +A+ +F   + + L  + +++   +  C 
Sbjct: 292 DAWKVFNTLPNPPRQSYNAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACS 351

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            +        +HGL +K GL  ++ V N++LDMY     L  A  IF EME +D +SW  
Sbjct: 352 VIKRHLEGIQLHGLAVKCGLGFNICVANTILDMYGKCGALMEACLIFEEMERRDAVSWNA 411

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++      E     L +F  M +S +  D     +++   A    L  G ++H +++  G
Sbjct: 412 IIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGTEIHGRIIKSG 471

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           +  +  + ++++ MY KCG L  +  +  ++ EK+ VSW +IISG+     +  A   F 
Sbjct: 472 MGLDWFVGSALVDMYGKCGMLMEAEKIHARLEEKTTVSWNSIISGFSSQKQSENAQRYFS 531

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +M  E     D+ T  ++L     +A +E+  Q+H    +        + + L+  YSKC
Sbjct: 532 QML-EMGIIPDNYTYATVLDVCANMATIELGKQIHAQILKLQLHSDVYIASTLVDMYSKC 590

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           GN+  + ++FE+    RD V+W+ +I  Y  +G GE A+ L+ +M      P+ + ++S+
Sbjct: 591 GNMQDSRLMFEKAP-KRDYVTWSAMICAYAYHGLGEKAINLFEEMQLLNVKPNHTIFISV 649

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L AC H G  + GL  F +M+    + P  EHY C+VDLL R+G +++A  L   +    
Sbjct: 650 LRACAHMGYVDKGLHYFQKMLSHYGLDPQMEHYSCMVDLLGRSGQVNEALKLIESMPFEA 709

Query: 522 GPNIWRALLSGCVLHVGRFQDAE 544
              IWR LLS C +  G  + AE
Sbjct: 710 DDVIWRTLLSNCKMQ-GNVEVAE 731



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 144/568 (25%), Positives = 264/568 (46%), Gaps = 46/568 (8%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  D  + + L+  Y   G +  A++LFD +PE++VVSW+ ++  Y  NG + KS++ F 
Sbjct: 68  PQRDVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEIFV 127

Query: 61  HMMLSGLLPNSF-TMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-------------- 105
            M  S  +P+ + T   +L A +G+++  L   +H L ++ G E+D              
Sbjct: 128 RMR-SLKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKC 186

Query: 106 --------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
                   +F  +    LV  +A++AG++ N  F + + LF      G+  +  T  +V 
Sbjct: 187 KKLDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVF 246

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
           R C  L +  L   +HG  +K     D  +  + LDMY+    +  A ++F  +      
Sbjct: 247 RSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTLPNPPRQ 306

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           S+  ++  +   +    AL IF+ ++++ +  D ++L   ++  +++     G QLH   
Sbjct: 307 SYNAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEGIQLHGLA 366

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           V  GL   + ++N+I+ MY KCG L  +  +F ++  +  VSW AII+ + QN    + L
Sbjct: 367 VKCGLGFNICVANTILDMYGKCGALMEACLIFEEMERRDAVSWNAIIAAHEQNEEIVKTL 426

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
           + F+ M +   +  D  T  S++ A     AL    ++HG   ++G      V + L+  
Sbjct: 427 SLFVSMLRSTMEP-DDFTYGSVVKACAGQQALNYGTEIHGRIIKSGMGLDWFVGSALVDM 485

Query: 398 YSKCG---NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           Y KCG     +  +   EE    +  VSWN+II G+      E A   + +M E G +PD
Sbjct: 486 YGKCGMLMEAEKIHARLEE----KTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGIIPD 541

Query: 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY--GCVVDLLARAGCLSDASG 512
           + TY ++L+ C +      G  I  Q++   K++   + Y    +VD+ ++ G + D+  
Sbjct: 542 NYTYATVLDVCANMATIELGKQIHAQIL---KLQLHSDVYIASTLVDMYSKCGNMQDS-- 596

Query: 513 LAGKLLEGMGPN----IWRALLSGCVLH 536
              +L+    P      W A++     H
Sbjct: 597 ---RLMFEKAPKRDYVTWSAMICAYAYH 621



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 121/483 (25%), Positives = 229/483 (47%), Gaps = 27/483 (5%)

Query: 12  LSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNS 71
           L  Y K  ++ +A  +F+ +P     S++ +I GY+      K++  F  +  + L  + 
Sbjct: 281 LDMYAKCERMFDAWKVFNTLPNPPRQSYNAIIVGYARQDQGLKALDIFQSLQRNNLGFDE 340

Query: 72  FTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------------FEG 109
            ++ G L A + ++       +HGL VK GL  ++                      FE 
Sbjct: 341 ISLSGALTACSVIKRHLEGIQLHGLAVKCGLGFNICVANTILDMYGKCGALMEACLIFEE 400

Query: 110 LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALC 169
           ++    VS NAI+A    N+   + + LF     S + P+  T  +V++ C    +    
Sbjct: 401 MERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYG 460

Query: 170 ELIHGLTIKLGLILDVSVNNSVLDMY-SCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
             IHG  IK G+ LD  V ++++DMY  C M ++A  +I   +E K  +SW  ++  F  
Sbjct: 461 TEIHGRIIKSGMGLDWFVGSALVDMYGKCGMLMEAE-KIHARLEEKTTVSWNSIISGFSS 519

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
            + + +A + F +M +  II D      ++ V A +  ++ GKQ+HAQ++   L S++ +
Sbjct: 520 QKQSENAQRYFSQMLEMGIIPDNYTYATVLDVCANMATIELGKQIHAQILKLQLHSDVYI 579

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
           +++++ MYSKCG++  SR +F +  ++  V+W+A+I  Y  +G   +A+N F +M+    
Sbjct: 580 ASTLVDMYSKCGNMQDSRLMFEKAPKRDYVTWSAMICAYAYHGLGEKAINLFEEMQLLNV 639

Query: 349 DSVDSITLVSILTASGELAALEICLQ-LHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
               +I  +S+L A   +  ++  L     +    G        +C++    + G V+ A
Sbjct: 640 KPNHTI-FISVLRACAHMGYVDKGLHYFQKMLSHYGLDPQMEHYSCMVDLLGRSGQVNEA 698

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
             + E M F  D V W T++    + G+ E A   ++ + +  +  DSS Y+ + N    
Sbjct: 699 LKLIESMPFEADDVIWRTLLSNCKMQGNVEVAEKAFNSLLQL-DPQDSSAYVLLANVYAI 757

Query: 468 AGL 470
            G+
Sbjct: 758 VGM 760



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 110/239 (46%), Gaps = 35/239 (14%)

Query: 264 LGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAI 323
           L  L  GKQ+H Q+++ G    + ++N ++  Y K   ++ +  VF+++ ++ ++SW  +
Sbjct: 19  LKALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFKVFDRMPQRDVISWNTL 78

Query: 324 ISG-------------------------------YVQNGCAREALNQFIKMRQEKTDSVD 352
           I G                               Y+ NG  R+++  F++MR  K    D
Sbjct: 79  IFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEIFVRMRSLKIPH-D 137

Query: 353 SITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFE 412
             T   IL A   +    + LQ+H +A + GF       + L+  YSKC  +D A+ VF 
Sbjct: 138 YATFAVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDDAFRVFR 197

Query: 413 EMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLT 471
           EM   R++V W+ +I GY  N      L L+  M + G     STY S+  +C  AGL+
Sbjct: 198 EMP-ERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSC--AGLS 253



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 133/301 (44%), Gaps = 53/301 (17%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  S L+  Y K G + EAE +   + EK  VSW+ +I G+S     E + + FS M
Sbjct: 474 LDWFVGSALVDMYGKCGMLMEAEKIHARLEEKTTVSWNSIISGFSSQKQSENAQRYFSQM 533

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
           +  G++P+++T   VL   A +  +EL + IH  ++K  L SD                 
Sbjct: 534 LEMGIIPDNYTYATVLDVCANMATIELGKQIHAQILKLQLHSDVYIASTLVDMYSKCGNM 593

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +FE       V+ +A++  +  + L ++A+ LF   +   + PN    ++V+R C
Sbjct: 594 QDSRLMFEKAPKRDYVTWSAMICAYAYHGLGEKAINLFEEMQLLNVKPNHTIFISVLRAC 653

Query: 161 VALG--SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDL-------DAAIQIFREM 211
             +G   + L      +    GL       +  ++ YSC++DL       + A+++   M
Sbjct: 654 AHMGYVDKGL-HYFQKMLSHYGL-------DPQMEHYSCMVDLLGRSGQVNEALKLIESM 705

Query: 212 --ECKDVISWT-----RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAIL 264
             E  DVI  T     +M G   + E A  A     ++       D+ A + L +V AI+
Sbjct: 706 PFEADDVIWRTLLSNCKMQG---NVEVAEKAFNSLLQLDPQ----DSSAYVLLANVYAIV 758

Query: 265 G 265
           G
Sbjct: 759 G 759



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 5/133 (3%)

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
           +    +T   IL     L AL    Q+H      GF     V NCL+  Y K   ++ A+
Sbjct: 2   NPTKKLTFSHILQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAF 61

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
            VF+ M   RDV+SWNT+I+GY   G+   A +L+  M E     D  ++ S+L+   H 
Sbjct: 62  KVFDRMP-QRDVISWNTLIFGYAGIGNMGFAQSLFDSMPER----DVVSWNSLLSCYLHN 116

Query: 469 GLTNDGLVIFNQM 481
           G+    + IF +M
Sbjct: 117 GVNRKSIEIFVRM 129


>gi|50251760|dbj|BAD27693.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|222623393|gb|EEE57525.1| hypothetical protein OsJ_07836 [Oryza sativa Japonica Group]
          Length = 667

 Score =  248 bits (632), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 174/612 (28%), Positives = 296/612 (48%), Gaps = 65/612 (10%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWS-IVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFT 73
           Y   G+   A NL  ++P+   VS+S  ++  Y+  G H +++  +S M     L   F 
Sbjct: 55  YCACGRPSSAHNLLAQMPQPPPVSFSNSLLRSYTGLGCHREALAVYSAMRAFDHLTFPFA 114

Query: 74  MVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFEGLK 111
                 A AGL+     R++H   +  G   D                      +F  ++
Sbjct: 115 AK----ACAGLRLGRHGRAVHCRALAAGFGGDTYVQNALISMYMSCGDVGAAEAVFGAMR 170

Query: 112 NPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCEL 171
           N  +VS NA++AG + N   ++A+ +F      G+  +  T+++V+  C           
Sbjct: 171 NRTVVSWNAVIAGCVKNGYAERALEVFGEMAADGVGIDRATVVSVLPACAQAKDLNTGRA 230

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC-KDVISWTRMMGLFVDFE 230
           +H L    GL   V+V N+++DMY     L+ A ++F   +  KDV+SWT M+G +V  +
Sbjct: 231 VHRLVEDKGLGDYVAVKNALIDMYGKCRSLEDARRVFDHCKHDKDVVSWTAMIGAYVLND 290

Query: 231 YAGDALKIFREMRKS-RIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLS 289
            A +A+ +  +M  S     + V ++ L+S  A +   K  K  HA  +  GL+S++ + 
Sbjct: 291 RAFEAISLGCQMLMSGAAWPNGVTMVYLLSACASMPSGKHAKCTHALCIRLGLKSDIAVE 350

Query: 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD 349
            ++I  Y++CG +   R    + + ++  +W A +SGY  +G  ++A+  F +M  E   
Sbjct: 351 TALIDAYARCGKMKLMRLTLERGSWRA-ETWNAALSGYTVSGREKKAIELFKRMIAESVR 409

Query: 350 SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYI 409
             DS T+ SIL A  E A L+    +H      GF R   +   LI  YSK G++D A+ 
Sbjct: 410 P-DSATMASILPAYAESADLKEGKNIHCFLLTLGFLRSTEIATGLIDVYSKAGDLDAAWA 468

Query: 410 VFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAG 469
           +F+ +   +DVV+W TII GYG++GH  TA+ LY +M E+G  P++ T  ++L AC HAG
Sbjct: 469 LFQWLP-EKDVVAWTTIIAGYGIHGHARTAILLYDRMVESGGKPNTVTIATLLYACSHAG 527

Query: 470 LTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRAL 529
           + ++G+ +F  M   + + P+ EHY C+VD+L RAG + +A  L   +      ++W AL
Sbjct: 528 MIDEGIKVFKDMRNVHGLMPNGEHYSCLVDMLGRAGRIEEAHRLIQDMPFEPSTSVWGAL 587

Query: 530 LSGCVLH---------------------------------VGRFQDAEALRSGSQKKGII 556
           L  CVLH                                   R++D + +R    ++G++
Sbjct: 588 LGACVLHKNVEFGEVAAKRLFQLDPENTGSYVLLGNIYAAADRWRDVQDVRRMMVERGLL 647

Query: 557 KIPGISFLNSTS 568
           K PG S + + S
Sbjct: 648 KEPGSSLVEARS 659



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 116/482 (24%), Positives = 220/482 (45%), Gaps = 54/482 (11%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + L+S Y   G +  AE +F  +  + VVSW+ VI G   NG+ E++++ F  M 
Sbjct: 142 DTYVQNALISMYMSCGDVGAAEAVFGAMRNRTVVSWNAVIAGCVKNGYAERALEVFGEMA 201

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL--------------------- 102
             G+  +  T+V VL A A  ++L   R++H L+   GL                     
Sbjct: 202 ADGVGIDRATVVSVLPACAQAKDLNTGRAVHRLVEDKGLGDYVAVKNALIDMYGKCRSLE 261

Query: 103 -ESDLFEGLKNPY-LVSCNAIVAGFI-NNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
               +F+  K+   +VS  A++  ++ N++ F+   L           PN VTM+ ++  
Sbjct: 262 DARRVFDHCKHDKDVVSWTAMIGAYVLNDRAFEAISLGCQMLMSGAAWPNGVTMVYLLSA 321

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C ++ S    +  H L I+LGL  D++V  +++D Y+    +   +++  E       +W
Sbjct: 322 CASMPSGKHAKCTHALCIRLGLKSDIAVETALIDAYARCGKMK-LMRLTLERGSWRAETW 380

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
              +  +        A+++F+ M    +  D+  + +++   A   DLK GK +H  ++ 
Sbjct: 381 NAALSGYTVSGREKKAIELFKRMIAESVRPDSATMASILPAYAESADLKEGKNIHCFLLT 440

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G      ++  +I +YSK GDLD++ ++F  + EK +V+WT II+GY  +G AR A+  
Sbjct: 441 LGFLRSTEIATGLIDVYSKAGDLDAAWALFQWLPEKDVVAWTTIIAGYGIHGHARTAILL 500

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ-------- 391
           + +M  E     +++T+ ++L A      ++  +++        F   R+V         
Sbjct: 501 YDRM-VESGGKPNTVTIATLLYACSHAGMIDEGIKV--------FKDMRNVHGLMPNGEH 551

Query: 392 -NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
            +CL+    + G ++ A+ + ++M F      W  ++              + HK  E G
Sbjct: 552 YSCLVDMLGRAGRIEEAHRLIQDMPFEPSTSVWGALL-----------GACVLHKNVEFG 600

Query: 451 EV 452
           EV
Sbjct: 601 EV 602



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 119/263 (45%), Gaps = 11/263 (4%)

Query: 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWT-AIISGYVQNGCAREALNQFIKMRQEKT 348
           + +  +Y  CG   S+ ++  Q+ +   VS++ +++  Y   GC REAL  +  MR    
Sbjct: 49  HPLFMVYCACGRPSSAHNLLAQMPQPPPVSFSNSLLRSYTGLGCHREALAVYSAMR---- 104

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
            + D +T      A   L        +H  A  AGF     VQN LIS Y  CG+V  A 
Sbjct: 105 -AFDHLTFPFAAKACAGLRLGRHGRAVHCRALAAGFGGDTYVQNALISMYMSCGDVGAAE 163

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
            VF  M   R VVSWN +I G   NG+ E AL ++ +M   G   D +T +S+L AC  A
Sbjct: 164 AVFGAMRN-RTVVSWNAVIAGCVKNGYAERALEVFGEMAADGVGIDRATVVSVLPACAQA 222

Query: 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRA 528
              N G  + ++++E+  +         ++D+  +   L DA  +            W A
Sbjct: 223 KDLNTGRAV-HRLVEDKGLGDYVAVKNALIDMYGKCRSLEDARRVFDHCKHDKDVVSWTA 281

Query: 529 LLSGCVLHVGRFQDAEALRSGSQ 551
           ++   VL+   F   EA+  G Q
Sbjct: 282 MIGAYVLNDRAF---EAISLGCQ 301


>gi|255585601|ref|XP_002533488.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526650|gb|EEF28892.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 939

 Score =  248 bits (632), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 162/563 (28%), Positives = 273/563 (48%), Gaps = 25/563 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D    S LL  Y K  ++ ++  +F EIP KN V WS +I G   N  H   ++ F  M 
Sbjct: 210 DVVTGSALLDMYAKCKRLDDSLKIFSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQ 269

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------- 106
             G+  +      V  + AGL  L++   +H   +K    SD+                 
Sbjct: 270 KVGIGVSQSIYASVFRSCAGLSALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLA 329

Query: 107 -----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                F  L    L   NAI+ G + N+   +A+  F     SGL  N +++      C 
Sbjct: 330 DAQRIFNSLPKHSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACA 389

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
           ++        +H L++K  L  ++ V NS+LDMY     L  A  +F EME +D +SW  
Sbjct: 390 SIKGDLDGRQLHSLSVKSTLRSNICVANSILDMYGKCEALSEACCMFDEMERRDAVSWNA 449

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++          + L +F  M + R+  D     +++   +    L  G ++H +++  G
Sbjct: 450 VIAAHEQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIKSG 509

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           L  +  +  ++I MY KCG ++ ++ + ++I ++++VSW AII+G+     + +A + F 
Sbjct: 510 LGLDSFVGGALIDMYCKCGMIEEAKKIHDRIEQQTMVSWNAIIAGFTLLKHSEDAHSFFY 569

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +M +      D+ T   +L A   LA++ +  Q+HG   +        + + L+  YSKC
Sbjct: 570 EMLKMSVKP-DNFTYAIVLDACANLASVGLGKQIHGQIIKLELHSDVYITSTLVDMYSKC 628

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           GN+  + +VFE+    +D V+WN +I GY  +G GE AL  + +M      P+ +T++SI
Sbjct: 629 GNMQDSALVFEKAPN-KDFVTWNAMICGYAQHGLGEEALGYFERMQLENVRPNHATFVSI 687

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L AC H G  + GL  FN M+ E  ++P  EHY C++D++ R+G +S+A  L  ++    
Sbjct: 688 LRACAHMGFIDKGLHYFNAMLTEYGLEPQIEHYSCMIDIIGRSGRISEALKLIQEMPFEA 747

Query: 522 GPNIWRALLSGCVLHVGRFQDAE 544
              IWR LLS C +H G  + AE
Sbjct: 748 DAVIWRTLLSICKIH-GNIEIAE 769



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 156/565 (27%), Positives = 268/565 (47%), Gaps = 51/565 (9%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           YN+  ++S Y  +G++  A   F + P+++VVSW+ ++ G+  NG   KS+  F  M  S
Sbjct: 112 YNT--MISGYADAGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNGECRKSIDVFLDMGRS 169

Query: 66  ---GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG------------- 109
              G    +F +  VL A + L++  L   +HGL+V+ G   D+  G             
Sbjct: 170 EEVGFDQTTFAV--VLKACSVLEDGGLGIQVHGLIVRMGFYKDVVTGSALLDMYAKCKRL 227

Query: 110 -----------LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                      +KN   V  +AI+AG + N      + LF   +  G+  +     +V R
Sbjct: 228 DDSLKIFSEIPVKN--WVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSIYASVFR 285

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C  L +  +   +H   +K     D++V  + LDMY+    L  A +IF  +    +  
Sbjct: 286 SCAGLSALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFNSLPKHSLQC 345

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNA-ILGDLKRGKQLHAQV 277
           +  ++   V  E   +AL+ F+ + KS +  + ++L    S  A I GDL  G+QLH+  
Sbjct: 346 YNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLD-GRQLHSLS 404

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           V   L+S + ++NSI+ MY KC  L  +  +F+++  +  VSW A+I+ + QNG   E L
Sbjct: 405 VKSTLRSNICVANSILDMYGKCEALSEACCMFDEMERRDAVSWNAVIAAHEQNGNEEETL 464

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
           N F  M + + +  D  T  S+L A     AL   +++H    ++G      V   LI  
Sbjct: 465 NLFASMLRLRMEP-DQFTYGSVLKACSSQQALNSGMEIHNRIIKSGLGLDSFVGGALIDM 523

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           Y KCG ++ A  + + +   + +VSWN II G+ +  H E A + +++M +    PD+ T
Sbjct: 524 YCKCGMIEEAKKIHDRIE-QQTMVSWNAIIAGFTLLKHSEDAHSFFYEMLKMSVKPDNFT 582

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY--GCVVDLLARAGCLSDASGLAG 515
           Y  +L+AC +      G  I  Q+I   K++   + Y    +VD+ ++ G + D++    
Sbjct: 583 YAIVLDACANLASVGLGKQIHGQII---KLELHSDVYITSTLVDMYSKCGNMQDSA---- 635

Query: 516 KLLEGMGPN----IWRALLSGCVLH 536
            L+    PN     W A++ G   H
Sbjct: 636 -LVFEKAPNKDFVTWNAMICGYAQH 659



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 130/500 (26%), Positives = 235/500 (47%), Gaps = 26/500 (5%)

Query: 12  LSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNS 71
           L  Y K G + +A+ +F+ +P+ ++  ++ +I G   N    ++++ F  ++ SGL  N 
Sbjct: 319 LDMYAKCGSLADAQRIFNSLPKHSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNE 378

Query: 72  FTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFEG 109
            ++ G   A A ++     R +H L VK  L S+                      +F+ 
Sbjct: 379 ISLSGAFSACASIKGDLDGRQLHSLSVKSTLRSNICVANSILDMYGKCEALSEACCMFDE 438

Query: 110 LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALC 169
           ++    VS NA++A    N   ++ + LF       + P+  T  +V++ C +  +    
Sbjct: 439 MERRDAVSWNAVIAAHEQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQALNSG 498

Query: 170 ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDF 229
             IH   IK GL LD  V  +++DMY     ++ A +I   +E + ++SW  ++  F   
Sbjct: 499 MEIHNRIIKSGLGLDSFVGGALIDMYCKCGMIEEAKKIHDRIEQQTMVSWNAIIAGFTLL 558

Query: 230 EYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLS 289
           +++ DA   F EM K  +  D      ++   A L  +  GKQ+H Q++   L S++ ++
Sbjct: 559 KHSEDAHSFFYEMLKMSVKPDNFTYAIVLDACANLASVGLGKQIHGQIIKLELHSDVYIT 618

Query: 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD 349
           ++++ MYSKCG++  S  VF +   K  V+W A+I GY Q+G   EAL  F +M+ E   
Sbjct: 619 STLVDMYSKCGNMQDSALVFEKAPNKDFVTWNAMICGYAQHGLGEEALGYFERMQLENVR 678

Query: 350 SVDSITLVSILTASGELAALEICLQ-LHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
             +  T VSIL A   +  ++  L   + +  E G        +C+I    + G +  A 
Sbjct: 679 P-NHATFVSILRACAHMGFIDKGLHYFNAMLTEYGLEPQIEHYSCMIDIIGRSGRISEAL 737

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
            + +EM F  D V W T++    ++G+ E A    + + +  E  DSS  + + N    A
Sbjct: 738 KLIQEMPFEADAVIWRTLLSICKIHGNIEIAEKATNAILQL-EPEDSSACILLSNIYADA 796

Query: 469 GLTNDGLVIFNQMIEENKVK 488
           G+    +    +M+  NK+K
Sbjct: 797 GMWGK-VSEMRKMMRYNKLK 815



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 93/360 (25%), Positives = 156/360 (43%), Gaps = 41/360 (11%)

Query: 130 LFQQAVLLFNFFRGSGLVPNAVTMLTVIRG-------CVALGSRALCELIHGLTIKLGLI 182
           L+ + + +F F   S L  N   + T IR        C    S    +  H   I  G I
Sbjct: 16  LYNKTLRIFTFCTISTLQQNQTKLPTKIRTFSHIIQECSDYNSLKPGKQAHARMIVSGFI 75

Query: 183 LDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD-------------- 228
            DV ++N ++ MY     L+ A ++F +M  +DVIS+  M+  + D              
Sbjct: 76  PDVYISNCLMKMYLRCSHLNYAYKVFEKMSQRDVISYNTMISGYADAGEMNLANEFFYDT 135

Query: 229 --------------FEYAGDALK---IFREM-RKSRIICDTVALLNLISVNAILGDLKRG 270
                         F   G+  K   +F +M R   +  D      ++   ++L D   G
Sbjct: 136 PKRDVVSWNSMLSGFLQNGECRKSIDVFLDMGRSEEVGFDQTTFAVVLKACSVLEDGGLG 195

Query: 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
            Q+H  +V  G   ++   ++++ MY+KC  LD S  +F++I  K+ V W+AII+G VQN
Sbjct: 196 IQVHGLIVRMGFYKDVVTGSALLDMYAKCKRLDDSLKIFSEIPVKNWVCWSAIIAGCVQN 255

Query: 331 GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV 390
                 L  F +M++       SI   S+  +   L+AL++  QLH  A +  F    +V
Sbjct: 256 DEHILGLELFKEMQKVGIGVSQSI-YASVFRSCAGLSALKVGTQLHAHALKCDFGSDITV 314

Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
               +  Y+KCG++  A  +F  +     +  +N II G   N  G  AL  +  + ++G
Sbjct: 315 GTATLDMYAKCGSLADAQRIFNSLP-KHSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSG 373



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 144/313 (46%), Gaps = 48/313 (15%)

Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSL--------- 317
           LK GKQ HA++++ G   ++ +SN ++ MY +C  L+ +  VF +++++ +         
Sbjct: 59  LKPGKQAHARMIVSGFIPDVYISNCLMKMYLRCSHLNYAYKVFEKMSQRDVISYNTMISG 118

Query: 318 ----------------------VSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSIT 355
                                 VSW +++SG++QNG  R++++ F+ M + +    D  T
Sbjct: 119 YADAGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNGECRKSIDVFLDMGRSEEVGFDQTT 178

Query: 356 LVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMG 415
              +L A   L    + +Q+HG+    GF +     + L+  Y+KC  +D +  +F E+ 
Sbjct: 179 FAVVLKACSVLEDGGLGIQVHGLIVRMGFYKDVVTGSALLDMYAKCKRLDDSLKIFSEIP 238

Query: 416 FLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGL 475
            +++ V W+ II G   N      L L+ +M + G     S Y S+  +C  AGL+   L
Sbjct: 239 -VKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSIYASVFRSC--AGLS--AL 293

Query: 476 VIFNQMIEENKVKPSQEHYG-------CVVDLLARAGCLSDASGLAGKLLEGMGPNIWRA 528
            +  Q+         +  +G         +D+ A+ G L+DA  +   L +      + A
Sbjct: 294 KVGTQL----HAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFNSLPK-HSLQCYNA 348

Query: 529 LLSGCVLHVGRFQ 541
           ++ GCV +   F+
Sbjct: 349 IIVGCVRNEKGFE 361



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 120/253 (47%), Gaps = 36/253 (14%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +    L+  Y K G I+EA+ + D I ++ +VSW+ +I G+++    E +   F  M
Sbjct: 512 LDSFVGGALIDMYCKCGMIEEAKKIHDRIEQQTMVSWNAIIAGFTLLKHSEDAHSFFYEM 571

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
           +   + P++FT   VL A A L ++ L + IHG ++K  L SD                 
Sbjct: 572 LKMSVKPDNFTYAIVLDACANLASVGLGKQIHGQIIKLELHSDVYITSTLVDMYSKCGNM 631

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +FE   N   V+ NA++ G+  + L ++A+  F   +   + PN  T ++++R C
Sbjct: 632 QDSALVFEKAPNKDFVTWNAMICGYAQHGLGEEALGYFERMQLENVRPNHATFVSILRAC 691

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMD-------LDAAIQIFREMEC 213
             +G      +  GL     ++ +  +   + + YSC++D       +  A+++ +EM  
Sbjct: 692 AHMGF-----IDKGLHYFNAMLTEYGLEPQI-EHYSCMIDIIGRSGRISEALKLIQEMPF 745

Query: 214 K-DVISWTRMMGL 225
           + D + W  ++ +
Sbjct: 746 EADAVIWRTLLSI 758



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 99/229 (43%), Gaps = 44/229 (19%)

Query: 343 MRQEKTDSVDSI-TLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           ++Q +T     I T   I+    +  +L+   Q H     +GF     + NCL+  Y +C
Sbjct: 32  LQQNQTKLPTKIRTFSHIIQECSDYNSLKPGKQAHARMIVSGFIPDVYISNCLMKMYLRC 91

Query: 402 GNVDLAYIVFEEM-------------GFL-----------------RDVVSWNTIIYGYG 431
            +++ AY VFE+M             G+                  RDVVSWN+++ G+ 
Sbjct: 92  SHLNYAYKVFEKMSQRDVISYNTMISGYADAGEMNLANEFFYDTPKRDVVSWNSMLSGFL 151

Query: 432 VNGHGETALALYHKMTETGEVP-DSSTYLSILNAC-----GHAGLTNDGLVIFNQMIEEN 485
            NG    ++ ++  M  + EV  D +T+  +L AC     G  G+   GL++      ++
Sbjct: 152 QNGECRKSIDVFLDMGRSEEVGFDQTTFAVVLKACSVLEDGGLGIQVHGLIV-RMGFYKD 210

Query: 486 KVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCV 534
            V  S      ++D+ A+   L D+  +  + +       W A+++GCV
Sbjct: 211 VVTGS-----ALLDMYAKCKRLDDSLKIFSE-IPVKNWVCWSAIIAGCV 253


>gi|356523677|ref|XP_003530462.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  248 bits (632), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 166/567 (29%), Positives = 267/567 (47%), Gaps = 33/567 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D    S L+  Y K  K+  A  +F E+PE+N+V WS VI GY  N    + +K F  M+
Sbjct: 172 DVVTGSALVDMYSKCKKLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDML 231

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
             G+  +  T   V  + AGL   +L   +HG  +K     D                  
Sbjct: 232 KVGMGVSQSTYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMS 291

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +F  L NP   S NAI+ G+       +A+ +F   + + L  + +++   +  C 
Sbjct: 292 DAWKVFNTLPNPPRQSYNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACS 351

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            +        +HGL +K GL  ++ V N++LDMY     L  A  IF +ME +D +SW  
Sbjct: 352 VIKGHLEGIQLHGLAVKCGLGFNICVANTILDMYGKCGALVEACTIFDDMERRDAVSWNA 411

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++      E     L +F  M +S +  D     +++   A    L  G ++H ++V  G
Sbjct: 412 IIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGMEIHGRIVKSG 471

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           +  +  + ++++ MY KCG L  +  + +++ EK+ VSW +IISG+     +  A   F 
Sbjct: 472 MGLDWFVGSALVDMYGKCGMLMEAEKIHDRLEEKTTVSWNSIISGFSSQKQSENAQRYFS 531

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +M  E     D+ T  ++L     +A +E+  Q+H    +        + + L+  YSKC
Sbjct: 532 QML-EMGVIPDNFTYATVLDVCANMATIELGKQIHAQILKLNLHSDVYIASTLVDMYSKC 590

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           GN+  + ++FE+    RD V+W+ +I  Y  +GHGE A+ L+ +M      P+ + ++S+
Sbjct: 591 GNMQDSRLMFEKTP-KRDYVTWSAMICAYAYHGHGEQAIKLFEEMQLLNVKPNHTIFISV 649

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L AC H G  + GL  F  M     + P  EHY C+VDLL R    SD    A KL+E M
Sbjct: 650 LRACAHMGYVDKGLHYFQIMQSHYGLDPHMEHYSCMVDLLGR----SDQVNEALKLIESM 705

Query: 522 ----GPNIWRALLSGCVLHVGRFQDAE 544
                  IWR LLS C +  G  + AE
Sbjct: 706 HFEADDVIWRTLLSNCKMQ-GNVEVAE 731



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 142/563 (25%), Positives = 267/563 (47%), Gaps = 36/563 (6%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  D  + + ++  Y + G +  A++LFD +PE++VVSW+ ++  Y  NG + KS++ F 
Sbjct: 68  PHRDVISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRKSIEIFV 127

Query: 61  HMMLSGLLPNSF-TMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-------------- 105
            M  S  +P+ + T   VL A +G+++  L   +H L ++ G E+D              
Sbjct: 128 RMR-SLKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKC 186

Query: 106 --------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
                   +F  +    LV  +A++AG++ N  F + + LF      G+  +  T  +V 
Sbjct: 187 KKLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVF 246

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
           R C  L +  L   +HG  +K     D  +  + LDMY+    +  A ++F  +      
Sbjct: 247 RSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLPNPPRQ 306

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           S+  ++  +   +    AL+IF+ ++++ +  D ++L   ++  +++     G QLH   
Sbjct: 307 SYNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEGIQLHGLA 366

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           V  GL   + ++N+I+ MY KCG L  + ++F+ +  +  VSW AII+ + QN    + L
Sbjct: 367 VKCGLGFNICVANTILDMYGKCGALVEACTIFDDMERRDAVSWNAIIAAHEQNEEIVKTL 426

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
           + F+ M +   +  D  T  S++ A     AL   +++HG   ++G      V + L+  
Sbjct: 427 SLFVSMLRSTMEP-DDFTYGSVVKACAGQQALNYGMEIHGRIVKSGMGLDWFVGSALVDM 485

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           Y KCG +  A  + + +   +  VSWN+II G+      E A   + +M E G +PD+ T
Sbjct: 486 YGKCGMLMEAEKIHDRLE-EKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGVIPDNFT 544

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL 517
           Y ++L+ C +      G  I  Q+++ N +         +VD+ ++ G + D+     +L
Sbjct: 545 YATVLDVCANMATIELGKQIHAQILKLN-LHSDVYIASTLVDMYSKCGNMQDS-----RL 598

Query: 518 LEGMGPN----IWRALLSGCVLH 536
           +    P      W A++     H
Sbjct: 599 MFEKTPKRDYVTWSAMICAYAYH 621



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 117/483 (24%), Positives = 229/483 (47%), Gaps = 27/483 (5%)

Query: 12  LSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNS 71
           L  Y K  ++ +A  +F+ +P     S++ +I GY+      K+++ F  +  + L  + 
Sbjct: 281 LDMYAKCDRMSDAWKVFNTLPNPPRQSYNAIIVGYARQDQGLKALEIFQSLQRTYLSFDE 340

Query: 72  FTMVGVLVAAAGLQNLELARSIHGLMVKFGL----------------------ESDLFEG 109
            ++ G L A + ++       +HGL VK GL                         +F+ 
Sbjct: 341 ISLSGALTACSVIKGHLEGIQLHGLAVKCGLGFNICVANTILDMYGKCGALVEACTIFDD 400

Query: 110 LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALC 169
           ++    VS NAI+A    N+   + + LF     S + P+  T  +V++ C    +    
Sbjct: 401 MERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYG 460

Query: 170 ELIHGLTIKLGLILDVSVNNSVLDMY-SCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
             IHG  +K G+ LD  V ++++DMY  C M ++A  +I   +E K  +SW  ++  F  
Sbjct: 461 MEIHGRIVKSGMGLDWFVGSALVDMYGKCGMLMEAE-KIHDRLEEKTTVSWNSIISGFSS 519

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
            + + +A + F +M +  +I D      ++ V A +  ++ GKQ+HAQ++   L S++ +
Sbjct: 520 QKQSENAQRYFSQMLEMGVIPDNFTYATVLDVCANMATIELGKQIHAQILKLNLHSDVYI 579

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
           +++++ MYSKCG++  SR +F +  ++  V+W+A+I  Y  +G   +A+  F +M+    
Sbjct: 580 ASTLVDMYSKCGNMQDSRLMFEKTPKRDYVTWSAMICAYAYHGHGEQAIKLFEEMQLLNV 639

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGI-AFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
               +I  +S+L A   +  ++  L    I     G   +    +C++    +   V+ A
Sbjct: 640 KPNHTI-FISVLRACAHMGYVDKGLHYFQIMQSHYGLDPHMEHYSCMVDLLGRSDQVNEA 698

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
             + E M F  D V W T++    + G+ E A   ++ + +  +  DSS Y+ + N   +
Sbjct: 699 LKLIESMHFEADDVIWRTLLSNCKMQGNVEVAEKAFNSLLQL-DPQDSSAYVLLANVYAN 757

Query: 468 AGL 470
            G+
Sbjct: 758 VGM 760



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 112/239 (46%), Gaps = 35/239 (14%)

Query: 264 LGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKC------------------------ 299
           L  L  GKQ HAQ+++      + ++N ++  Y K                         
Sbjct: 19  LKALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAFKVFDRMPHRDVISWNTM 78

Query: 300 -------GDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVD 352
                  G++  ++S+F+ + E+ +VSW +++S Y+ NG  R+++  F++MR  K    D
Sbjct: 79  IFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRKSIEIFVRMRSLKIPH-D 137

Query: 353 SITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFE 412
             T   +L A   +    + LQ+H +A + GF       + L+  YSKC  +D A+ +F 
Sbjct: 138 YATFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDGAFRIFR 197

Query: 413 EMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLT 471
           EM   R++V W+ +I GY  N      L L+  M + G     STY S+  +C  AGL+
Sbjct: 198 EMP-ERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSC--AGLS 253



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 117/255 (45%), Gaps = 44/255 (17%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  S L+  Y K G + EAE + D + EK  VSW+ +I G+S     E + + FS M
Sbjct: 474 LDWFVGSALVDMYGKCGMLMEAEKIHDRLEEKTTVSWNSIISGFSSQKQSENAQRYFSQM 533

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
           +  G++P++FT   VL   A +  +EL + IH  ++K  L SD                 
Sbjct: 534 LEMGVIPDNFTYATVLDVCANMATIELGKQIHAQILKLNLHSDVYIASTLVDMYSKCGNM 593

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +FE       V+ +A++  +  +   +QA+ LF   +   + PN    ++V+R C
Sbjct: 594 QDSRLMFEKTPKRDYVTWSAMICAYAYHGHGEQAIKLFEEMQLLNVKPNHTIFISVLRAC 653

Query: 161 VALGSRALCELIHGLTI---KLGLILDVSVNNSVLDMYSCLMDL-------DAAIQIFRE 210
             +G   + + +H   I     GL       +  ++ YSC++DL       + A+++   
Sbjct: 654 AHMG--YVDKGLHYFQIMQSHYGL-------DPHMEHYSCMVDLLGRSDQVNEALKLIES 704

Query: 211 M--ECKDVISWTRMM 223
           M  E  DVI W  ++
Sbjct: 705 MHFEADDVI-WRTLL 718



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 62/133 (46%), Gaps = 5/133 (3%)

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
           +     T   IL     L AL    Q H       F     V NCL+  Y K  N++ A+
Sbjct: 2   NPTKKFTFSHILQKCSNLKALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAF 61

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
            VF+ M   RDV+SWNT+I+GY   G+   A +L+  M E     D  ++ S+L+   H 
Sbjct: 62  KVFDRMPH-RDVISWNTMIFGYAEIGNMGFAQSLFDTMPER----DVVSWNSLLSCYLHN 116

Query: 469 GLTNDGLVIFNQM 481
           G+    + IF +M
Sbjct: 117 GVNRKSIEIFVRM 129


>gi|242035545|ref|XP_002465167.1| hypothetical protein SORBIDRAFT_01g033280 [Sorghum bicolor]
 gi|241919021|gb|EER92165.1| hypothetical protein SORBIDRAFT_01g033280 [Sorghum bicolor]
          Length = 564

 Score =  248 bits (632), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 158/498 (31%), Positives = 258/498 (51%), Gaps = 36/498 (7%)

Query: 67  LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL-----------------------E 103
           L P+SFT   ++ AA G  +   A   H   ++ GL                        
Sbjct: 65  LRPDSFTFPPLVRAAPGPAS---AAQFHACALRLGLLHPNVFASGSLVHAYLRFGRVAEA 121

Query: 104 SDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
             +F+ +    + + NA+++G   N     AV LF    G G+  +AVT+ +V+  CV L
Sbjct: 122 YRVFDEMPERDVPAWNAMLSGLCRNARAVDAVALFGRMVGEGVAGDAVTLSSVLPMCVLL 181

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
           G RAL  ++H   +K GL  ++ V N+++D+Y  L  L  A  +F  M  +D+++W  ++
Sbjct: 182 GDRALALVMHVYAVKRGLSGELFVCNALIDVYGKLGMLVEARWVFGGMALRDLVTWNSII 241

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
             +        A+++F  M KS +  D + L++L S  A  GD +  K +H  V   G  
Sbjct: 242 SAYEQGGKVAAAVELFHGMMKSGVSPDVLTLVSLASAVAQCGDERGAKSVHCYVRRRGWD 301

Query: 284 -SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
             ++   N+++ MY+K   +D+++ VF+ + ++ +VSW  +I+GY+QNG + EA+  +  
Sbjct: 302 VGDIIAGNAVVDMYAKLSKIDAAQMVFDNLPDRDVVSWNTLITGYMQNGLSNEAVRIYND 361

Query: 343 MRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
           M+  +       T VSIL A   L AL+  +++H ++ + G      V  CLI  Y+KCG
Sbjct: 362 MQNHEGLKPIQGTFVSILPAYSNLGALQQGMRMHALSIKTGLNLDVYVSTCLIDLYAKCG 421

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
            +  A ++FE M   R    WN II G GV+GHG  AL L+ +M + G  PD+ T++S+L
Sbjct: 422 KLVEAMLLFEHMP-RRSTGPWNAIIAGLGVHGHGAKALNLFSQMQQEGIKPDNVTFVSLL 480

Query: 463 NACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMG 522
            AC HAGL + G   F+ M     + P  +HY C+VD+L RAG L +A     + ++GM 
Sbjct: 481 AACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYACMVDMLGRAGQLDEAF----EFIQGMP 536

Query: 523 --PN--IWRALLSGCVLH 536
             P+  +W ALL  C +H
Sbjct: 537 IKPDSAVWGALLGACRIH 554



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 118/471 (25%), Positives = 225/471 (47%), Gaps = 43/471 (9%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           + S  L+  Y + G++ EA  +FDE+PE++V +W+ ++ G   N     ++  F  M+  
Sbjct: 103 FASGSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRNARAVDAVALFGRMVGE 162

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL------------------- 106
           G+  ++ T+  VL     L +  LA  +H   VK GL  +L                   
Sbjct: 163 GVAGDAVTLSSVLPMCVLLGDRALALVMHVYAVKRGLSGELFVCNALIDVYGKLGMLVEA 222

Query: 107 ---FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
              F G+    LV+ N+I++ +        AV LF+    SG+ P+ +T++++       
Sbjct: 223 RWVFGGMALRDLVTWNSIISAYEQGGKVAAAVELFHGMMKSGVSPDVLTLVSLASAVAQC 282

Query: 164 GSRALCELIHGLTIKLGL-ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
           G     + +H    + G  + D+   N+V+DMY+ L  +DAA  +F  +  +DV+SW  +
Sbjct: 283 GDERGAKSVHCYVRRRGWDVGDIIAGNAVVDMYAKLSKIDAAQMVFDNLPDRDVVSWNTL 342

Query: 223 MGLFVDFEYAGDALKIFREMRKS---RIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           +  ++    + +A++I+ +M+     + I  T   ++++   + LG L++G ++HA  + 
Sbjct: 343 ITGYMQNGLSNEAVRIYNDMQNHEGLKPIQGT--FVSILPAYSNLGALQQGMRMHALSIK 400

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            GL  ++ +S  +I +Y+KCG L  +  +F  +  +S   W AII+G   +G   +ALN 
Sbjct: 401 TGLNLDVYVSTCLIDLYAKCGKLVEAMLLFEHMPRRSTGPWNAIIAGLGVHGHGAKALNL 460

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAAL-------EICLQLHGIAFEAGFPRYRSVQN 392
           F +M+QE     D++T VS+L A      +       ++   ++GI   A          
Sbjct: 461 FSQMQQEGIKP-DNVTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKH------YA 513

Query: 393 CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALY 443
           C++    + G +D A+   + M    D   W  ++    ++G+ E A A+Y
Sbjct: 514 CMVDMLGRAGQLDEAFEFIQGMPIKPDSAVWGALLGACRIHGNVELA-AIY 563



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 52/95 (54%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D Y S+ L+  Y K GK+ EA  LF+ +P ++   W+ +I G  ++G   K++  FS M
Sbjct: 405 LDVYVSTCLIDLYAKCGKLVEAMLLFEHMPRRSTGPWNAIIAGLGVHGHGAKALNLFSQM 464

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLM 97
              G+ P++ T V +L A +    ++  RS   LM
Sbjct: 465 QQEGIKPDNVTFVSLLAACSHAGLVDQGRSFFDLM 499


>gi|30689384|ref|NP_194969.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75147159|sp|Q84MA3.1|PP345_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g32430, mitochondrial; Flags: Precursor
 gi|30102674|gb|AAP21255.1| At4g32430 [Arabidopsis thaliana]
 gi|110742925|dbj|BAE99358.1| hypothetical protein [Arabidopsis thaliana]
 gi|332660658|gb|AEE86058.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 763

 Score =  248 bits (632), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 168/554 (30%), Positives = 273/554 (49%), Gaps = 36/554 (6%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ ++  Y K+G+   A  +F+ + + +VVSW+ ++ G+  N   + ++     M  +G+
Sbjct: 114 SNAVMGMYRKAGRFDNALCIFENLVDPDVVSWNTILSGFDDN---QIALNFVVRMKSAGV 170

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------FEGLKN 112
           + ++FT    L    G +   L   +   +VK GLESDL               F G + 
Sbjct: 171 VFDAFTYSTALSFCVGSEGFLLGLQLQSTVVKTGLESDLVVGNSFITMYSRSGSFRGARR 230

Query: 113 PY-------LVSCNAIVAGFINNKLFQ-QAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
            +       ++S N++++G      F  +AV++F      G+  + V+  +VI  C    
Sbjct: 231 VFDEMSFKDMISWNSLLSGLSQEGTFGFEAVVIFRDMMREGVELDHVSFTSVITTCCHET 290

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
              L   IHGL IK G    + V N ++  YS    L+A   +F +M  ++V+SWT M+ 
Sbjct: 291 DLKLARQIHGLCIKRGYESLLEVGNILMSRYSKCGVLEAVKSVFHQMSERNVVSWTTMIS 350

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
              D     DA+ IF  MR   +  + V  + LI+       +K G ++H   +  G  S
Sbjct: 351 SNKD-----DAVSIFLNMRFDGVYPNEVTFVGLINAVKCNEQIKEGLKIHGLCIKTGFVS 405

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           E  + NS I +Y+K   L+ ++  F  IT + ++SW A+ISG+ QNG + EAL  F+   
Sbjct: 406 EPSVGNSFITLYAKFEALEDAKKAFEDITFREIISWNAMISGFAQNGFSHEALKMFLSAA 465

Query: 345 QEKTDSVDSITLVSILTA--SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
            E     +  T  S+L A    E  +++   + H    + G      V + L+  Y+K G
Sbjct: 466 AETMP--NEYTFGSVLNAIAFAEDISVKQGQRCHAHLLKLGLNSCPVVSSALLDMYAKRG 523

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
           N+D +  VF EM      V W +II  Y  +G  ET + L+HKM +    PD  T+LS+L
Sbjct: 524 NIDESEKVFNEMSQKNQFV-WTSIISAYSSHGDFETVMNLFHKMIKENVAPDLVTFLSVL 582

Query: 463 NACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMG 522
            AC   G+ + G  IFN MIE   ++PS EHY C+VD+L RAG L +A  L  ++  G G
Sbjct: 583 TACNRKGMVDKGYEIFNMMIEVYNLEPSHEHYSCMVDMLGRAGRLKEAEELMSEVPGGPG 642

Query: 523 PNIWRALLSGCVLH 536
            ++ +++L  C LH
Sbjct: 643 ESMLQSMLGSCRLH 656



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 115/393 (29%), Positives = 188/393 (47%), Gaps = 31/393 (7%)

Query: 149 NAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIF 208
           + VT+   ++ C     R  C+ IHG +   G    V V+N+V+ MY      D A+ IF
Sbjct: 77  DEVTLCLALKACRGDLKRG-CQ-IHGFSTTSGFTSFVCVSNAVMGMYRKAGRFDNALCIF 134

Query: 209 REMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLK 268
             +   DV+SW  ++  F D +    AL     M+ + ++ D       +S         
Sbjct: 135 ENLVDPDVVSWNTILSGFDDNQI---ALNFVVRMKSAGVVFDAFTYSTALSFCVGSEGFL 191

Query: 269 RGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYV 328
            G QL + VV  GL+S+L + NS I MYS+ G    +R VF++++ K ++SW +++SG  
Sbjct: 192 LGLQLQSTVVKTGLESDLVVGNSFITMYSRSGSFRGARRVFDEMSFKDMISWNSLLSGLS 251

Query: 329 QNGC-AREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRY 387
           Q G    EA+  F  M +E  + +D ++  S++T       L++  Q+HG+  + G+   
Sbjct: 252 QEGTFGFEAVVIFRDMMREGVE-LDHVSFTSVITTCCHETDLKLARQIHGLCIKRGYESL 310

Query: 388 RSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMT 447
             V N L+S YSKCG ++    VF +M   R+VVSW T+I     + + + A++++  M 
Sbjct: 311 LEVGNILMSRYSKCGVLEAVKSVFHQMS-ERNVVSWTTMI-----SSNKDDAVSIFLNMR 364

Query: 448 ETGEVPDSSTYLSILNA--CGHA---GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLA 502
             G  P+  T++ ++NA  C      GL   GL I    + E  V  S       + L A
Sbjct: 365 FDGVYPNEVTFVGLINAVKCNEQIKEGLKIHGLCIKTGFVSEPSVGNS------FITLYA 418

Query: 503 RAGCLSDASGLAGKLLEGMGPN---IWRALLSG 532
           +   L DA     K  E +       W A++SG
Sbjct: 419 KFEALEDAK----KAFEDITFREIISWNAMISG 447



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/233 (20%), Positives = 103/233 (44%), Gaps = 31/233 (13%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           +P   +  ++ Y K   +++A+  F++I  + ++SW+ +I G++ NGF  +++K F    
Sbjct: 406 EPSVGNSFITLYAKFEALEDAKKAFEDITFREIISWNAMISGFAQNGFSHEALKMFLSAA 465

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLEL--ARSIHGLMVKFGLES----------------- 104
            +  +PN +T   VL A A  +++ +   +  H  ++K GL S                 
Sbjct: 466 -AETMPNEYTFGSVLNAIAFAEDISVKQGQRCHAHLLKLGLNSCPVVSSALLDMYAKRGN 524

Query: 105 -----DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                 +F  +         +I++ + ++  F+  + LF+      + P+ VT L+V+  
Sbjct: 525 IDESEKVFNEMSQKNQFVWTSIISAYSSHGDFETVMNLFHKMIKENVAPDLVTFLSVLTA 584

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME 212
           C   G      +  G  I   ++++V       + YSC++D+       +E E
Sbjct: 585 CNRKGM-----VDKGYEI-FNMMIEVYNLEPSHEHYSCMVDMLGRAGRLKEAE 631


>gi|115436506|ref|NP_001043011.1| Os01g0357800 [Oryza sativa Japonica Group]
 gi|53791613|dbj|BAD52960.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|53792343|dbj|BAD53077.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113532542|dbj|BAF04925.1| Os01g0357800 [Oryza sativa Japonica Group]
          Length = 804

 Score =  247 bits (631), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 165/576 (28%), Positives = 287/576 (49%), Gaps = 31/576 (5%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYS--INGFHEKSMKAFSHMMLSG 66
           S L+  Y K  K  ++  +F+EI  K++V+++ +I GYS  ++     + +  + M+ + 
Sbjct: 185 SSLIGLYSKFSKTNDSRGVFEEIINKDIVAYTSMITGYSETVDSIAWNAFEIATDMLQNN 244

Query: 67  LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK--FGLESDLFE-GLKNPY--------- 114
           L  N  T+V +L  A  L  L+  +S+H   ++   G+  D+ E  + N Y         
Sbjct: 245 LEVNRVTLVSLLQIAGNLGALQEGKSLHCYSIRRAIGVSDDILETSIVNFYTRCGAYQSA 304

Query: 115 ----------LVSCNAIVAGFIN-NKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
                     + S NA+++G     + F     L        + P++VT   V+  C  L
Sbjct: 305 ATVLQNSKGTVASWNALLSGLNRAGQSFNAIQYLPVMLHEHKVTPDSVTFANVLSACAEL 364

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
                   IH   I+  + +DV +  +++++Y+    +  +  +F ++  KDV+S+  M+
Sbjct: 365 CYFCFAASIHAYFIRRFIPMDVVLTTALIEVYTKCTRVMRSKYLFDQLIIKDVVSYNAMI 424

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
             ++  + A +A  +   M    +  D   +L+L++  A   DL RG+ +H   +  G  
Sbjct: 425 YGYLQNDMANEATSLLNYMMAEGVAPDFATVLSLLAAFADQRDLVRGRWIHGFAIRHGFC 484

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
           S++ + N I+ MYS CG + ++R++F+ + +K+LVSWTA++ G + NG A E + Q  ++
Sbjct: 485 SDVDVENQILYMYSACGKIAAARAIFDSLEKKNLVSWTAMMKGCLSNGHADEVV-QLFQV 543

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
            Q+  +  DS++LV+ + A  +L  L    Q+H   + +   + +   N LIS+Y+KCG 
Sbjct: 544 MQKYGEKPDSVSLVTAVQAVSDLGHLNGLKQIHCFVYRSLLEKDKITANSLISAYAKCGK 603

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           +DL+  +F  + + R++ +WN +I  Y ++G     L ++ +M E    PD  T+ ++L 
Sbjct: 604 LDLSAGLFFSLKY-RNLDTWNAMISAYAMHGFHINVLEMFKQMEEENIQPDELTFSTVLT 662

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
           AC HAGL  DG  IFN M     V P +EHYGC+VDLL RAG L D              
Sbjct: 663 ACSHAGLVKDGWRIFNSMTSVYSVLPQEEHYGCMVDLLGRAGHLEDGYKFIKLSTLKDKS 722

Query: 524 NIWRALLSGCVLH----VGRFQDAEALRSGSQKKGI 555
            I+ ALLS C  H    +      E L  G Q  GI
Sbjct: 723 TIFCALLSACRTHGNTRLAHAISKELLEHGPQNPGI 758



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 139/554 (25%), Positives = 238/554 (42%), Gaps = 74/554 (13%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS-GL 67
           + +++ Y + G  + A  +     +  V SW+ ++ G +  G    +++    M+    +
Sbjct: 289 TSIVNFYTRCGAYQSAATVLQN-SKGTVASWNALLSGLNRAGQSFNAIQYLPVMLHEHKV 347

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
            P+S T   VL A A L     A SIH   ++  +  D                      
Sbjct: 348 TPDSVTFANVLSACAELCYFCFAASIHAYFIRRFIPMDVVLTTALIEVYTKCTRVMRSKY 407

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           LF+ L    +VS NA++ G++ N +  +A  L N+    G+ P+  T+L+++        
Sbjct: 408 LFDQLIIKDVVSYNAMIYGYLQNDMANEATSLLNYMMAEGVAPDFATVLSLLAAFADQRD 467

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
                 IHG  I+ G   DV V N +L MYS    + AA  IF  +E K+++SWT MM  
Sbjct: 468 LVRGRWIHGFAIRHGFCSDVDVENQILYMYSACGKIAAARAIFDSLEKKNLVSWTAMMKG 527

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
            +   +A + +++F+ M+K     D+V+L+  +   + LG L   KQ+H  V    L+ +
Sbjct: 528 CLSNGHADEVVQLFQVMQKYGEKPDSVSLVTAVQAVSDLGHLNGLKQIHCFVYRSLLEKD 587

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
              +NS+I+ Y+KCG LD S  +F  +  ++L +W A+IS Y  +G     L  F +M +
Sbjct: 588 KITANSLISAYAKCGKLDLSAGLFFSLKYRNLDTWNAMISAYAMHGFHINVLEMFKQMEE 647

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
           E     D +T  ++LTA             H    + G+     + N + S YS      
Sbjct: 648 ENIQP-DELTFSTVLTACS-----------HAGLVKDGW----RIFNSMTSVYSVLPQE- 690

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST-YLSILNA 464
                 E  G + D++         G  GH E      +K  +   + D ST + ++L+A
Sbjct: 691 ------EHYGCMVDLL---------GRAGHLEDG----YKFIKLSTLKDKSTIFCALLSA 731

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C   G T     I  +++E     P    Y  + ++ A+ G  ++ +             
Sbjct: 732 CRTHGNTRLAHAISKELLEHGPQNPGI--YALISEVYAQEGQWNEVANTKA--------- 780

Query: 525 IWRALLSGCVLHVG 538
             RA LSG   H G
Sbjct: 781 --RADLSGLKKHPG 792



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 132/565 (23%), Positives = 265/565 (46%), Gaps = 39/565 (6%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C D    SK+LS Y   G + E+  +F +I   ++  W+  +  Y   G+ E+ +  +  
Sbjct: 77  CWDVILGSKILSCYANLGALHESRLVFQKIVNDDISLWNSAMVDYFRAGYPEEVIILYKR 136

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIH-------------------GLMVKFGL 102
           + L+ +  N  T+  V+ +   L+NL L + +H                   GL  KF  
Sbjct: 137 LKLNQIGFNGKTITFVMKSCTELKNLYLGKGVHADSLKLALSGNKFVGSSLIGLYSKFSK 196

Query: 103 ESD---LFEGLKNPYLVSCNAIVAGFIN--NKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
            +D   +FE + N  +V+  +++ G+    + +   A  +      + L  N VT+++++
Sbjct: 197 TNDSRGVFEEIINKDIVAYTSMITGYSETVDSIAWNAFEIATDMLQNNLEVNRVTLVSLL 256

Query: 158 RGCVALGSRALCELIHGLTIKLGL-ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
           +    LG+    + +H  +I+  + + D  +  S+++ Y+      +A  + +  +   V
Sbjct: 257 QIAGNLGALQEGKSLHCYSIRRAIGVSDDILETSIVNFYTRCGAYQSAATVLQNSK-GTV 315

Query: 217 ISWTRMMGLFVDFEYAGDALKIFREM-RKSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
            SW  ++        + +A++    M  + ++  D+V   N++S  A L        +HA
Sbjct: 316 ASWNALLSGLNRAGQSFNAIQYLPVMLHEHKVTPDSVTFANVLSACAELCYFCFAASIHA 375

Query: 276 QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
             +   +  ++ L+ ++I +Y+KC  +  S+ +F+Q+  K +VS+ A+I GY+QN  A E
Sbjct: 376 YFIRRFIPMDVVLTTALIEVYTKCTRVMRSKYLFDQLIIKDVVSYNAMIYGYLQNDMANE 435

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLI 395
           A +    M  E   + D  T++S+L A  +   L     +HG A   GF     V+N ++
Sbjct: 436 ATSLLNYMMAEGV-APDFATVLSLLAAFADQRDLVRGRWIHGFAIRHGFCSDVDVENQIL 494

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
             YS CG +  A  +F+ +   +++VSW  ++ G   NGH +  + L+  M + GE PDS
Sbjct: 495 YMYSACGKIAAARAIFDSLE-KKNLVSWTAMMKGCLSNGHADEVVQLFQVMQKYGEKPDS 553

Query: 456 STYLSILNAC---GH-AGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDAS 511
            + ++ + A    GH  GL      ++  ++E++K+  +      ++   A+ G L  ++
Sbjct: 554 VSLVTAVQAVSDLGHLNGLKQIHCFVYRSLLEKDKITANS-----LISAYAKCGKLDLSA 608

Query: 512 GLAGKLLEGMGPNIWRALLSGCVLH 536
           GL    L+    + W A++S   +H
Sbjct: 609 GLFFS-LKYRNLDTWNAMISAYAMH 632



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 147/312 (47%), Gaps = 37/312 (11%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ L+  Y K  ++  ++ LFD++  K+VVS++ +I+GY  N    ++    ++MM  G+
Sbjct: 389 TTALIEVYTKCTRVMRSKYLFDQLIIKDVVSYNAMIYGYLQNDMANEATSLLNYMMAEGV 448

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
            P+  T++ +L A A  ++L   R IHG  ++ G  SD                      
Sbjct: 449 APDFATVLSLLAAFADQRDLVRGRWIHGFAIRHGFCSDVDVENQILYMYSACGKIAAARA 508

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F+ L+   LVS  A++ G ++N    + V LF   +  G  P++V+++T ++    LG 
Sbjct: 509 IFDSLEKKNLVSWTAMMKGCLSNGHADEVVQLFQVMQKYGEKPDSVSLVTAVQAVSDLGH 568

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
               + IH    +  L  D    NS++  Y+    LD +  +F  ++ +++ +W  M+  
Sbjct: 569 LNGLKQIHCFVYRSLLEKDKITANSLISAYAKCGKLDLSAGLFFSLKYRNLDTWNAMISA 628

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +    +  + L++F++M +  I  D +    +++  +  G +K G               
Sbjct: 629 YAMHGFHINVLEMFKQMEEENIQPDELTFSTVLTACSHAGLVKDG--------------- 673

Query: 286 LRLSNSIIAMYS 297
            R+ NS+ ++YS
Sbjct: 674 WRIFNSMTSVYS 685



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 81/185 (43%), Gaps = 22/185 (11%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C D    +++L  Y   GKI  A  +FD + +KN+VSW+ ++ G   NG  ++ ++ F  
Sbjct: 484 CSDVDVENQILYMYSACGKIAAARAIFDSLEKKNLVSWTAMMKGCLSNGHADEVVQLFQV 543

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------- 105
           M   G  P+S ++V  + A + L +L   + IH  + +  LE D                
Sbjct: 544 MQKYGEKPDSVSLVTAVQAVSDLGHLNGLKQIHCFVYRSLLEKDKITANSLISAYAKCGK 603

Query: 106 ------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                 LF  LK   L + NA+++ +  +      + +F       + P+ +T  TV+  
Sbjct: 604 LDLSAGLFFSLKYRNLDTWNAMISAYAMHGFHINVLEMFKQMEEENIQPDELTFSTVLTA 663

Query: 160 CVALG 164
           C   G
Sbjct: 664 CSHAG 668


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  247 bits (631), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 183/684 (26%), Positives = 312/684 (45%), Gaps = 124/684 (18%)

Query: 1   PCIDPYN-SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAF 59
           P I P +  + ++++Y   G    A  + + +     V W+++I  +   G  + ++   
Sbjct: 46  PFISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVS 105

Query: 60  SHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF------------ 107
             M+ +G   + FT+  VL A   L +     + HGL+   G ES++F            
Sbjct: 106 CRMLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRC 165

Query: 108 ---------------EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFF------RGSGL 146
                           G+ +  ++S N+IV+  + +     A+ LF+        + +  
Sbjct: 166 GSLEEASMIFDEITQRGIDD--VISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNE 223

Query: 147 VPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQ 206
             + ++++ ++  C +L +    + +HG  I+ G  LDV V N+++D Y+    ++ A++
Sbjct: 224 RSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVK 283

Query: 207 IFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICD---------------- 250
           +F  ME KDV+SW  M+  +        A ++F+ MRK  I  D                
Sbjct: 284 VFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGC 343

Query: 251 -------------------TVALLNLISVNAILGDLKRGKQLHAQVV----------LGG 281
                               V +++++S  A LG   +G ++HA  +           GG
Sbjct: 344 SHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGG 403

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT--EKSLVSWTAIISGYVQNGCAREALNQ 339
              +L + N++I MYSKC    ++RS+F+ I   E+++V+WT +I G+ Q G + +AL  
Sbjct: 404 EDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKL 463

Query: 340 FIKMRQEKTD-SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS----VQNCL 394
           F++M  E    + ++ T+  IL A   LAA+ I  Q+H  A+     +Y S    V NCL
Sbjct: 464 FVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIH--AYVLRHHQYDSSAYFVANCL 521

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           I+ YSKCG+VD A  VF+ M   +  +SW +++ GYG++G G  AL ++ KM + G VPD
Sbjct: 522 INMYSKCGDVDTARHVFDSMS-QKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPD 580

Query: 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLA 514
             T+L +L AC H G+ + GL  F+ M  +  + P  EHY   +DLLAR G L  A    
Sbjct: 581 DITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTV 640

Query: 515 GKLLEGMGPNIWRALLSGCVLH---------------------------------VGRFQ 541
             +       +W ALLS C +H                                  GR++
Sbjct: 641 KDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWK 700

Query: 542 DAEALRSGSQKKGIIKIPGISFLN 565
           D   +R   +K GI K PG S++ 
Sbjct: 701 DVARIRHLMKKSGIKKRPGCSWVQ 724



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 118/496 (23%), Positives = 216/496 (43%), Gaps = 77/496 (15%)

Query: 152 TMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM 211
           T+  V++ C  L S       HGL    G   +V + N+++ MYS    L+ A  IF E+
Sbjct: 119 TLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEI 178

Query: 212 ECK---DVISWTRMMGLFVDFEYAGDALKIFREM------RKSRIICDTVALLNLISVNA 262
             +   DVISW  ++   V    A  AL +F +M      + +    D ++++N++    
Sbjct: 179 TQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACG 238

Query: 263 ILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTA 322
            L  + + K++H   +  G   ++ + N++I  Y+KCG ++++  VFN +  K +VSW A
Sbjct: 239 SLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNA 298

Query: 323 IISGYVQNGCAREALNQFIKMRQEKT--DSV----------------------------- 351
           +++GY Q+G  + A   F  MR+E    D V                             
Sbjct: 299 MVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSG 358

Query: 352 ---DSITLVSILTASGELAALEICLQLHGIAFE----------AGFPRYRSVQNCLISSY 398
              + +T++S+L+A   L A    +++H  + +           G      V N LI  Y
Sbjct: 359 SLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMY 418

Query: 399 SKCGNVDLAYIVFEEMGF-LRDVVSWNTIIYGYGVNGHGETALALYHKMTET--GEVPDS 455
           SKC +   A  +F+++    R+VV+W  +I G+   G    AL L+ +M     G  P++
Sbjct: 419 SKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNA 478

Query: 456 STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYG-CVVDLLARAGCLSDASGLA 514
            T   IL AC H      G  I   ++  ++   S      C++++ ++ G +  A  + 
Sbjct: 479 YTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVF 538

Query: 515 GKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIK----------------- 557
             + +    + W ++++G  +H GR  +A  +    +K G +                  
Sbjct: 539 DSMSQKSAIS-WTSMMTGYGMH-GRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGM 596

Query: 558 -IPGISFLNSTSRDFG 572
              G+S+ +S S D+G
Sbjct: 597 VDQGLSYFDSMSADYG 612


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  247 bits (631), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 148/550 (26%), Positives = 281/550 (51%), Gaps = 30/550 (5%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+  Y K+G +++   +FDE+ +++VVSW+ ++ GYS N F+++  + F  M + G  P+
Sbjct: 143 LVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQVEGYRPD 202

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFE 108
            +T+  V+ A A    + +   IH L+VK G E++                      +F+
Sbjct: 203 YYTVSTVIAALANQGAVAIGMQIHALVVKLGFETERLVCNSLISMLSKSGMLRDARVVFD 262

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            ++N   VS N+++AG + N    +A   FN  + +G  P   T  +VI+ C +L    L
Sbjct: 263 NMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHATFASVIKSCASLKELGL 322

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME-CKDVISWTRMMGLFV 227
             ++H  T+K GL  + +V  +++   +   ++D A  +F  M   + V+SWT M+  ++
Sbjct: 323 VRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYL 382

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
                  A+ +F  MR+  +  +      +++V   +       ++HA+V+    +    
Sbjct: 383 QNGDTDQAVNLFSLMRREGVKPNHFTYSTILTVQHAVFI----SEIHAEVIKTNYEKSSS 438

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
           +  +++  + K G++  +  VF  I  K +++W+A+++GY Q G   EA   F ++ +E 
Sbjct: 439 VGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQLTREG 498

Query: 348 TDSVDSITLVSILTA-SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
               +  T  SI+ A +   A++E   Q H  A +        V + L++ Y+K GN++ 
Sbjct: 499 IKP-NEFTFCSIINACTAPTASVEQGKQFHAYAIKLRLNNALCVSSSLVTLYAKRGNIES 557

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           A+ +F+     RD+VSWN++I GY  +G  + AL ++ +M +     D+ T++ +++AC 
Sbjct: 558 AHEIFKRQK-ERDLVSWNSMISGYAQHGQAKKALEVFEEMQKRNLEVDAITFIGVISACA 616

Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIW 526
           HAGL   G   FN MI ++ + P+ EHY C++DL +RAG L  A  +   +       +W
Sbjct: 617 HAGLVGKGQNYFNIMINDHHINPTMEHYSCMIDLYSRAGMLGKAMDIINGMPFPPAATVW 676

Query: 527 RALLSGCVLH 536
           R +L+   +H
Sbjct: 677 RIVLAASRVH 686



 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 152/564 (26%), Positives = 268/564 (47%), Gaps = 32/564 (5%)

Query: 24  AENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAG 83
           A+ LFD+ P +++   + ++  YS     ++++  F  +  SGL P+S+TM  VL   AG
Sbjct: 55  AQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCAG 114

Query: 84  LQNLELARSIHGLMVKFGLESDL----------------------FEGLKNPYLVSCNAI 121
             N  +   +H   VK GL   L                      F+ + +  +VS N++
Sbjct: 115 SFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSL 174

Query: 122 VAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGL 181
           + G+  N+   Q   LF   +  G  P+  T+ TVI      G+ A+   IH L +KLG 
Sbjct: 175 LTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGF 234

Query: 182 ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFRE 241
             +  V NS++ M S    L  A  +F  ME KD +SW  M+   V      +A + F  
Sbjct: 235 ETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNN 294

Query: 242 MRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGD 301
           M+ +          ++I   A L +L   + LH + +  GL +   +  +++   +KC +
Sbjct: 295 MQLAGAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKE 354

Query: 302 LDSSRSVFNQIT-EKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSIL 360
           +D + S+F+ +   +S+VSWTA+ISGY+QNG   +A+N F  MR+E     +  T  +IL
Sbjct: 355 IDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKP-NHFTYSTIL 413

Query: 361 TASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDV 420
           T    +   EI    H    +  + +  SV   L+ ++ K GN+  A  VFE +   +DV
Sbjct: 414 TVQHAVFISEI----HAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIE-TKDV 468

Query: 421 VSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQ 480
           ++W+ ++ GY   G  E A  ++H++T  G  P+  T+ SI+NAC     + +    F+ 
Sbjct: 469 IAWSAMLAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQFHA 528

Query: 481 MIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRF 540
              + ++  +      +V L A+ G +  A  +  +  E    + W +++SG   H G+ 
Sbjct: 529 YAIKLRLNNALCVSSSLVTLYAKRGNIESAHEIFKRQKERDLVS-WNSMISGYAQH-GQA 586

Query: 541 QDAEALRSGSQKKGIIKIPGISFL 564
           + A  +    QK+  +++  I+F+
Sbjct: 587 KKALEVFEEMQKRN-LEVDAITFI 609



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 45/75 (60%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           SS L++ Y K G I+ A  +F    E+++VSW+ +I GY+ +G  +K+++ F  M    L
Sbjct: 542 SSSLVTLYAKRGNIESAHEIFKRQKERDLVSWNSMISGYAQHGQAKKALEVFEEMQKRNL 601

Query: 68  LPNSFTMVGVLVAAA 82
             ++ T +GV+ A A
Sbjct: 602 EVDAITFIGVISACA 616


>gi|356528513|ref|XP_003532847.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Glycine max]
          Length = 651

 Score =  247 bits (631), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 163/512 (31%), Positives = 260/512 (50%), Gaps = 26/512 (5%)

Query: 49  NGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF- 107
            G  + ++  F  M  SG+ PN+ T   VL A A L +L  ++ IH  ++K   +S++F 
Sbjct: 31  QGHAQNALILFRQMKQSGITPNNSTFPFVLKACAKLSHLRNSQIIHAHVLKSCFQSNIFV 90

Query: 108 --------------EGLKNPY-------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGL 146
                         E   N +       + S NA++ GF  +    +   L    R SG+
Sbjct: 91  QTATVDMYVKCGRLEDAHNVFVEMPVRDIASWNAMLLGFAQSGFLDRLSCLLRHMRLSGI 150

Query: 147 VPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQ 206
            P+AVT+L +I   + + S      ++   I++G+ +DVSV N+++  YS   +L +A  
Sbjct: 151 RPDAVTVLLLIDSILRVKSLTSLGAVYSFGIRIGVHMDVSVANTLIAAYSKCGNLCSAET 210

Query: 207 IFREMEC--KDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAIL 264
           +F E+    + V+SW  M+  + +FE    A+  ++ M       D   +LNL+S     
Sbjct: 211 LFDEINSGLRSVVSWNSMIAAYANFEKHVKAVNCYKGMLDGGFSPDISTILNLLSSCMQP 270

Query: 265 GDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAII 324
             L  G  +H+  V  G  S++ + N++I MYSKCGD+ S+R +FN +++K+ VSWT +I
Sbjct: 271 KALFHGLLVHSHGVKLGCDSDVCVVNTLICMYSKCGDVHSARFLFNGMSDKTCVSWTVMI 330

Query: 325 SGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGF 384
           S Y + G   EA+  F  M +   +  D +T++++++  G+  ALE+   +   +   G 
Sbjct: 331 SAYAEKGYMSEAMTLFNAM-EAAGEKPDLVTVLALISGCGQTGALELGKWIDNYSINNGL 389

Query: 385 PRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH 444
                V N LI  Y+KCG  + A  +F  M   R VVSW T+I    +NG  + AL L+ 
Sbjct: 390 KDNVVVCNALIDMYAKCGGFNDAKELFYTMAN-RTVVSWTTMITACALNGDVKDALELFF 448

Query: 445 KMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARA 504
            M E G  P+  T+L++L AC H GL   GL  FN M ++  + P  +HY C+VDLL R 
Sbjct: 449 MMLEMGMKPNHITFLAVLQACAHGGLVERGLECFNMMTQKYGINPGIDHYSCMVDLLGRK 508

Query: 505 GCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
           G L +A  +   +       IW ALLS C LH
Sbjct: 509 GHLREALEIIKSMPFEPDSGIWSALLSACKLH 540



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 123/431 (28%), Positives = 209/431 (48%), Gaps = 7/431 (1%)

Query: 115 LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHG 174
           L + N+     +N    Q A++LF   + SG+ PN  T   V++ C  L      ++IH 
Sbjct: 18  LFTWNSNFRHLVNQGHAQNALILFRQMKQSGITPNNSTFPFVLKACAKLSHLRNSQIIHA 77

Query: 175 LTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGD 234
             +K     ++ V  + +DMY     L+ A  +F EM  +D+ SW  M+  F    +   
Sbjct: 78  HVLKSCFQSNIFVQTATVDMYVKCGRLEDAHNVFVEMPVRDIASWNAMLLGFAQSGFLDR 137

Query: 235 ALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIA 294
              + R MR S I  D V +L LI     +  L     +++  +  G+  ++ ++N++IA
Sbjct: 138 LSCLLRHMRLSGIRPDAVTVLLLIDSILRVKSLTSLGAVYSFGIRIGVHMDVSVANTLIA 197

Query: 295 MYSKCGDLDSSRSVFNQITE--KSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVD 352
            YSKCG+L S+ ++F++I    +S+VSW ++I+ Y       +A+N +  M  +   S D
Sbjct: 198 AYSKCGNLCSAETLFDEINSGLRSVVSWNSMIAAYANFEKHVKAVNCYKGML-DGGFSPD 256

Query: 353 SITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFE 412
             T++++L++  +  AL   L +H    + G      V N LI  YSKCG+V  A  +F 
Sbjct: 257 ISTILNLLSSCMQPKALFHGLLVHSHGVKLGCDSDVCVVNTLICMYSKCGDVHSARFLFN 316

Query: 413 EMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTN 472
            M   +  VSW  +I  Y   G+   A+ L++ M   GE PD  T L++++ CG  G   
Sbjct: 317 GMSD-KTCVSWTVMISAYAEKGYMSEAMTLFNAMEAAGEKPDLVTVLALISGCGQTGALE 375

Query: 473 DGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSG 532
            G  I N  I  N +K +      ++D+ A+ G  +DA  L   +      + W  +++ 
Sbjct: 376 LGKWIDNYSI-NNGLKDNVVVCNALIDMYAKCGGFNDAKELFYTMANRTVVS-WTTMITA 433

Query: 533 CVLHVGRFQDA 543
           C L+ G  +DA
Sbjct: 434 CALN-GDVKDA 443



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 117/459 (25%), Positives = 226/459 (49%), Gaps = 48/459 (10%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTM 74
           Y K G++++A N+F E+P +++ SW+ ++ G++ +GF ++      HM LSG+ P++ T+
Sbjct: 98  YVKCGRLEDAHNVFVEMPVRDIASWNAMLLGFAQSGFLDRLSCLLRHMRLSGIRPDAVTV 157

Query: 75  VGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFE---- 108
           + ++ +   +++L    +++   ++ G+  D                      LF+    
Sbjct: 158 LLLIDSILRVKSLTSLGAVYSFGIRIGVHMDVSVANTLIAAYSKCGNLCSAETLFDEINS 217

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRG---SGLVPNAVTMLTVIRGCVALGS 165
           GL++  +VS N+++A + N   F++ V   N ++G    G  P+  T+L ++  C+   +
Sbjct: 218 GLRS--VVSWNSMIAAYAN---FEKHVKAVNCYKGMLDGGFSPDISTILNLLSSCMQPKA 272

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
                L+H   +KLG   DV V N+++ MYS   D+ +A  +F  M  K  +SWT M+  
Sbjct: 273 LFHGLLVHSHGVKLGCDSDVCVVNTLICMYSKCGDVHSARFLFNGMSDKTCVSWTVMISA 332

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           + +  Y  +A+ +F  M  +    D V +L LIS     G L+ GK +    +  GL+  
Sbjct: 333 YAEKGYMSEAMTLFNAMEAAGEKPDLVTVLALISGCGQTGALELGKWIDNYSINNGLKDN 392

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           + + N++I MY+KCG  + ++ +F  +  +++VSWT +I+    NG  ++AL  F  M  
Sbjct: 393 VVVCNALIDMYAKCGGFNDAKELFYTMANRTVVSWTTMITACALNGDVKDALELFF-MML 451

Query: 346 EKTDSVDSITLVSILTASGE-------LAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
           E     + IT +++L A          L    +  Q +GI    G   Y    +C++   
Sbjct: 452 EMGMKPNHITFLAVLQACAHGGLVERGLECFNMMTQKYGI--NPGIDHY----SCMVDLL 505

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGE 437
            + G++  A  + + M F  D   W+ ++    ++G  E
Sbjct: 506 GRKGHLREALEIIKSMPFEPDSGIWSALLSACKLHGKME 544



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 95/215 (44%), Gaps = 32/215 (14%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+  Y K G +  A  LF+ + +K  VSW+++I  Y+  G+  ++M  F+ M  +G  P+
Sbjct: 298 LICMYSKCGDVHSARFLFNGMSDKTCVSWTVMISAYAEKGYMSEAMTLFNAMEAAGEKPD 357

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE----------------------SDLFE 108
             T++ ++        LEL + I    +  GL+                       +LF 
Sbjct: 358 LVTVLALISGCGQTGALELGKWIDNYSINNGLKDNVVVCNALIDMYAKCGGFNDAKELFY 417

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV--ALGSR 166
            + N  +VS   ++     N   + A+ LF      G+ PN +T L V++ C    L  R
Sbjct: 418 TMANRTVVSWTTMITACALNGDVKDALELFFMMLEMGMKPNHITFLAVLQACAHGGLVER 477

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDL 201
            L E  + +T K G+       N  +D YSC++DL
Sbjct: 478 GL-ECFNMMTQKYGI-------NPGIDHYSCMVDL 504



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 73/149 (48%), Gaps = 2/149 (1%)

Query: 316 SLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQL 375
           +L +W +     V  G A+ AL  F +M+Q      +S T   +L A  +L+ L     +
Sbjct: 17  TLFTWNSNFRHLVNQGHAQNALILFRQMKQSGITPNNS-TFPFVLKACAKLSHLRNSQII 75

Query: 376 HGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGH 435
           H    ++ F     VQ   +  Y KCG ++ A+ VF EM  +RD+ SWN ++ G+  +G 
Sbjct: 76  HAHVLKSCFQSNIFVQTATVDMYVKCGRLEDAHNVFVEMP-VRDIASWNAMLLGFAQSGF 134

Query: 436 GETALALYHKMTETGEVPDSSTYLSILNA 464
            +    L   M  +G  PD+ T L ++++
Sbjct: 135 LDRLSCLLRHMRLSGIRPDAVTVLLLIDS 163


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  247 bits (631), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 159/522 (30%), Positives = 260/522 (49%), Gaps = 50/522 (9%)

Query: 49  NGFHEKSMKAFSHMMLSGLL--PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL 106
           N  H K + A  HM+ +GL   P S T +    A +   +L+ A               +
Sbjct: 42  NKKHLKQLHA--HMLRTGLFFDPPSATKLFTACALSSPSSLDYA-------------CKV 86

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLF-NFFRGSGLVPNAVTMLTVIRGCVALGS 165
           F+ +  P L + N ++  F ++    Q +L+F      S   PN+ T   VI+    + S
Sbjct: 87  FDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSS 146

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
               + IHG+ +K     D+ ++NS++  YS L DLD+A  +F ++  KD++SW  M+  
Sbjct: 147 LLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISG 206

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           FV      +AL++F+ M+      + V ++ ++S  A   DL+ G+     +   G+   
Sbjct: 207 FVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDIN 266

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYV----------------- 328
           L LSN+++ MY KCG L+ +R +F+++ EK +VSWT +I GY                  
Sbjct: 267 LILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPR 326

Query: 329 --------------QNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQ 374
                         QNG  +EAL  F +++  K    + +TL S L A  +L A+++   
Sbjct: 327 EDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGW 386

Query: 375 LHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNG 434
           +H    + G      +   LI  YSKCG+++ A  VF  +   RDV  W+ +I G  ++G
Sbjct: 387 IHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVE-RRDVFVWSAMIAGLAMHG 445

Query: 435 HGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY 494
           HG  A+ L+ KM ET   P++ T+ ++L AC H+GL ++G + FNQM     V P  +HY
Sbjct: 446 HGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVYGVVPGSKHY 505

Query: 495 GCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
            C+VD+L RAGCL +A  L  K+      ++W ALL  C ++
Sbjct: 506 ACMVDILGRAGCLEEAVELIEKMPIVPSASVWGALLGACRIY 547



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 130/513 (25%), Positives = 235/513 (45%), Gaps = 77/513 (15%)

Query: 4   DPYNSSKLLSNYFKSGK--IKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           DP +++KL +    S    +  A  +FD+IP  N+ +W+ +I  ++ +    + +  F  
Sbjct: 61  DPPSATKLFTACALSSPSSLDYACKVFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQ 120

Query: 62  MML-SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF------------E 108
           M+  S   PNS+T   V+ AA  + +L   ++IHG+++K    SDLF             
Sbjct: 121 MLHESQRFPNSYTFPFVIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLG 180

Query: 109 GLKNPYL----------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
            L + YL          VS N++++GF+     ++A+ LF   +     PN VTM+ V+ 
Sbjct: 181 DLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLS 240

Query: 159 GCVAL----GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
            C         R  C+ I    I + LIL    +N++LDMY     L+ A ++F +ME K
Sbjct: 241 ACAKRIDLEFGRWACDYIERNGIDINLIL----SNAMLDMYVKCGSLEDARRLFDKMEEK 296

Query: 215 DVISWTRMMGLFV---DFEYA----------------------------GDALKIFREMR 243
           D++SWT M+  +    D++ A                             +AL IFRE++
Sbjct: 297 DIVSWTTMIDGYAKVGDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQ 356

Query: 244 KSR-IICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDL 302
            ++    + V L + ++  A LG +  G  +H  +   G++    ++ S+I MYSKCG L
Sbjct: 357 LNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHL 416

Query: 303 DSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTA 362
           + +  VF  +  + +  W+A+I+G   +G  R A++ F KM++ K    +++T  ++L A
Sbjct: 417 EKALEVFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKP-NAVTFTNLLCA 475

Query: 363 SGELAALEICLQLHG-IAFEAGFPRYRSVQN-----CLISSYSKCGNVDLAYIVFEEMGF 416
                 ++      G + F    P Y  V       C++    + G ++ A  + E+M  
Sbjct: 476 CSHSGLVD-----EGRLFFNQMRPVYGVVPGSKHYACMVDILGRAGCLEEAVELIEKMPI 530

Query: 417 LRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
           +     W  ++    + G+ E A     ++ ET
Sbjct: 531 VPSASVWGALLGACRIYGNVELAEMACSRLLET 563


>gi|413935694|gb|AFW70245.1| hypothetical protein ZEAMMB73_875976 [Zea mays]
          Length = 807

 Score =  247 bits (631), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 178/702 (25%), Positives = 316/702 (45%), Gaps = 133/702 (18%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  + Y+ +  +S   ++G +  A +L   +P++N VSW+ VI   + +G   ++++ + 
Sbjct: 72  PHPNVYSYNAAISAACRAGDLAAARDLLGRMPDRNAVSWNTVIAAVARSGSPGEALEMYQ 131

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--------------- 105
            M+  GL P +FT+  VL A   +  L+  R  HGL VK GL+                 
Sbjct: 132 GMLQEGLAPTNFTLASVLSACGAVAALDDGRRCHGLAVKVGLDGHQFVENGLLGMYTKCG 191

Query: 106 -------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                  LF+G+ +P  VS  A++ G         A+ LF     +G+  + V + +V+ 
Sbjct: 192 SVADAVRLFDGMPSPNEVSFTAMMGGLAQGGAVDDALRLFARMSRTGIRVDPVAVSSVLG 251

Query: 159 GCVALG------SRA--LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFRE 210
            C          +RA  L + IH L ++ G   D  V NS++D+Y+  M +D AI++F  
Sbjct: 252 ACAQACAGDYNVARAIQLAQSIHALVVRKGFGSDQHVGNSLVDLYAKGMKMDEAIKVFES 311

Query: 211 MECKDVISWTRMM---GLFVDFEYAGDALKIF----------------------REMRKS 245
           +    ++SW  ++   G    +E A + L+                        R++  +
Sbjct: 312 LSSVSIVSWNILITGYGQLGCYERAMEVLEFMQESGFEPNEVTYSNMLASCIKARDVPSA 371

Query: 246 RIICDTVALLNLISVNAILG------------DLKRGKQ--------------------- 272
           R + D +   ++ + N +L             DL R  Q                     
Sbjct: 372 RAMFDKIPKPSVTTWNTLLSGYGQEELHQETIDLFRRMQHQNVQPDRTTLAVILSSCSRL 431

Query: 273 --------LHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAII 324
                   +H+  V   L +++ +++ +I +YSKCG +  +  +FN +TE+ +V W ++I
Sbjct: 432 GNFELGKQVHSASVRLLLHNDMFVASGLIDIYSKCGQVGIALIIFNMMTERDVVCWNSMI 491

Query: 325 SGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGF 384
           SG   +  + EA +   +MR+      +S +  S++     L+++    Q+H    + G+
Sbjct: 492 SGLAIHSLSEEAFDFLKQMRENGMFPTES-SYASMINLCARLSSIPQGRQMHAQVLKDGY 550

Query: 385 PRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH 444
            +   V   LI  Y+K GN+D A + F  M  ++++V+WN +I+GY  NG GE A+ L+ 
Sbjct: 551 DQNVYVGCSLIDMYAKSGNMDDARLFFNCM-IVKNLVAWNEMIHGYAQNGFGEKAVELFE 609

Query: 445 KMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARA 504
            M  T + PDS T++++L  C H+GL ++ +  FN M     + P  EHY C++D LARA
Sbjct: 610 YMLTTKQKPDSVTFIAVLTGCSHSGLVDEAVTFFNSMESNYGITPLVEHYTCLIDALARA 669

Query: 505 GCLSDASGLAGKLLEGMGPNIWRALLSGCVLH---------------------------- 536
              ++   + GK+     P +W  LL+ CV+H                            
Sbjct: 670 ARFAEVEAVIGKMPYKDDPILWEVLLAACVVHHNAELGEFSAKHLFRLDPKNPSPYVLLS 729

Query: 537 -----VGRFQDAEALRSGSQKKGIIKIPGISFLNST--SRDF 571
                +GR  DA A+R+    +G++K  G S++N    SR F
Sbjct: 730 NIYATLGRHGDASAVRALMSSRGVVKGRGYSWVNHKDGSRAF 771



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 106/432 (24%), Positives = 188/432 (43%), Gaps = 62/432 (14%)

Query: 46  YSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD 105
           YS++G    +++AF  +      PN ++    + AA    +L  AR             D
Sbjct: 55  YSLSGLPCHALRAFRALPH----PNVYSYNAAISAACRAGDLAAAR-------------D 97

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           L   + +   VS N ++A    +    +A+ ++      GL P   T+ +V+  C A+ +
Sbjct: 98  LLGRMPDRNAVSWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLASVLSACGAVAA 157

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
                  HGL +K+GL     V N +L MY+    +  A+++F  M   + +S+T MMG 
Sbjct: 158 LDDGRRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGMPSPNEVSFTAMMGG 217

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLIS--VNAILGD------LKRGKQLHAQV 277
                   DAL++F  M ++ I  D VA+ +++     A  GD      ++  + +HA V
Sbjct: 218 LAQGGAVDDALRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYNVARAIQLAQSIHALV 277

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           V  G  S+  + NS++ +Y+K   +D +  VF  ++  S+VSW  +I+GY Q GC   A+
Sbjct: 278 VRKGFGSDQHVGNSLVDLYAKGMKMDEAIKVFESLSSVSIVSWNILITGYGQLGCYERAM 337

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
                M+                                    E+GF       + +++S
Sbjct: 338 EVLEFMQ------------------------------------ESGFEPNEVTYSNMLAS 361

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
             K  +V  A  +F+++     V +WNT++ GYG     +  + L+ +M      PD +T
Sbjct: 362 CIKARDVPSARAMFDKIP-KPSVTTWNTLLSGYGQEELHQETIDLFRRMQHQNVQPDRTT 420

Query: 458 YLSILNACGHAG 469
              IL++C   G
Sbjct: 421 LAVILSSCSRLG 432


>gi|302817567|ref|XP_002990459.1| hypothetical protein SELMODRAFT_131642 [Selaginella moellendorffii]
 gi|300141844|gb|EFJ08552.1| hypothetical protein SELMODRAFT_131642 [Selaginella moellendorffii]
          Length = 830

 Score =  247 bits (631), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 159/582 (27%), Positives = 288/582 (49%), Gaps = 41/582 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L+  Y + G +++A  +FD I ++N++ W+ +I GY+     + +++ F  M+
Sbjct: 241 DAFVGNALIKMYRRCGSLEDASLVFDGIADRNLLVWNSMIAGYASLNEAQGTLEFFRKML 300

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELA--RSIHGLMVKFGLESD---------------- 105
           L G   +  T++ VL A A    L+ +  ++IH L V+ GL+SD                
Sbjct: 301 LDGWKGDKHTLLTVLDACAKSSTLQASSLQTIHDLAVESGLDSDTLVGTALVKIKSEQGD 360

Query: 106 ------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                 +F+ L+   L + N + + +  +   + A+ L    +   + P+ VT ++++  
Sbjct: 361 RKSAKMVFDSLRAKDLAAWNCMFSAYAKHGRLRDAMELQEQMKLDQVRPDKVTFVSILSA 420

Query: 160 CVALGSRALCEL---IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
           C A GS    E     H   ++ G  LD  +  +++ MY+    LD A  +F +ME +D+
Sbjct: 421 CTATGSSLGLETGKKTHEEILEQGYRLDAVLGTALVRMYAACGRLDDAKLVFEKMESRDL 480

Query: 217 ISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILG---DLKRGKQL 273
           ISWT M+G +       +A   FR ++      D VAL+      A LG   +L   +  
Sbjct: 481 ISWTTMLGAYTQARLLDEASITFRRIQLEGHTPDRVALI------AALGACTNLSSARDF 534

Query: 274 HAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA 333
           H ++   G + +  ++N+++ +YS CG L+ +   F+ I E S++SW  +I+ + + G  
Sbjct: 535 HERIRQLGWEKDPLVANALLEVYSACGSLEDANETFDGIGEPSVISWNLLIAAHTRLGHP 594

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC 393
             A +  ++  + +  + DS+TL +++ +   L        +H    EAG      V   
Sbjct: 595 DRAFD-LLRAMELQGHNPDSVTLATVINSRASLQLFRKGKIIHDSILEAGMEIDSVVATA 653

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           L++ Y KCG+   A  +F+ +G   +VV+WN+ +  Y  +GH   AL +  +M + G  P
Sbjct: 654 LVNFYGKCGDFATARSIFQGVGAADNVVTWNSTLAAYAQSGHASEALHVLAEMVQQGVAP 713

Query: 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL 513
            + T++S+L+ CGHAG+ + G  +F+ +  +  + P  EHYGC++DLLAR G L +A  L
Sbjct: 714 TAVTFVSVLSVCGHAGVADVGCHLFSSLRWDYDMDPIPEHYGCMIDLLARGGWLEEARQL 773

Query: 514 AGKLLEGMGPNIWRALLSGC----VLHVGRFQDAEALRSGSQ 551
              +        W ALLSGC    V   G F   + L+  +Q
Sbjct: 774 LKTMPTTPDSIKWMALLSGCHGASVDKTGVFMAMQLLQQNTQ 815



 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 134/506 (26%), Positives = 241/506 (47%), Gaps = 43/506 (8%)

Query: 9   SKLLSNYFKSGKIKEAENLFD-EIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           + L+  Y K G + EA  +FD  +  KN+VSW+ ++  Y   G  E+++  F  M+  G+
Sbjct: 148 TALVRMYAKCGSVDEARRVFDNRLLRKNIVSWTTMVSAYVERGCLEQALTLFIEMLQEGV 207

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
            PN  T V VL A     +L+  R +H L+ + GL+SD                      
Sbjct: 208 APNEITYVSVLNAC----DLDAGRKVHRLIEQSGLDSDAFVGNALIKMYRRCGSLEDASL 263

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRG---SGLVPNAVTMLTVIRGCVA 162
           +F+G+ +  L+  N+++AG+ +     +A     FFR     G   +  T+LTV+  C  
Sbjct: 264 VFDGIADRNLLVWNSMIAGYAS---LNEAQGTLEFFRKMLLDGWKGDKHTLLTVLDACAK 320

Query: 163 LGSRALCEL--IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             +     L  IH L ++ GL  D  V  +++ + S   D  +A  +F  +  KD+ +W 
Sbjct: 321 SSTLQASSLQTIHDLAVESGLDSDTLVGTALVKIKSEQGDRKSAKMVFDSLRAKDLAAWN 380

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGD---LKRGKQLHAQV 277
            M   +       DA+++  +M+  ++  D V  ++++S     G    L+ GK+ H ++
Sbjct: 381 CMFSAYAKHGRLRDAMELQEQMKLDQVRPDKVTFVSILSACTATGSSLGLETGKKTHEEI 440

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           +  G + +  L  +++ MY+ CG LD ++ VF ++  + L+SWT ++  Y Q     EA 
Sbjct: 441 LEQGYRLDAVLGTALVRMYAACGRLDDAKLVFEKMESRDLISWTTMLGAYTQARLLDEAS 500

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
             F +++ E   + D + L++ L A   L++       H    + G+ +   V N L+  
Sbjct: 501 ITFRRIQLEG-HTPDRVALIAALGACTNLSSAR---DFHERIRQLGWEKDPLVANALLEV 556

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           YS CG+++ A   F+ +G    V+SWN +I  +   GH + A  L   M   G  PDS T
Sbjct: 557 YSACGSLEDANETFDGIGE-PSVISWNLLIAAHTRLGHPDRAFDLLRAMELQGHNPDSVT 615

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIE 483
             +++N+     L   G +I + ++E
Sbjct: 616 LATVINSRASLQLFRKGKIIHDSILE 641



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 88/296 (29%), Positives = 158/296 (53%), Gaps = 7/296 (2%)

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           +H   +  GL  ++ + N ++ MY     +D A ++F +M  +D   W  MM  +    +
Sbjct: 30  LHAQIVSDGLDKNLHLANGIVHMYLVCKSVDNARKVFDKMASRDAGLWAPMMAAYARVGH 89

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
             +A  +F  M    ++ D V LL +I+  +  G L  G+++H ++     +  + +  +
Sbjct: 90  LQEATGLFHRMLDEGVVPDRVTLLTVINACSESGSLAEGRRVHRRIQGSDFEWSVDVGTA 149

Query: 292 IIAMYSKCGDLDSSRSVF-NQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDS 350
           ++ MY+KCG +D +R VF N++  K++VSWT ++S YV+ GC  +AL  FI+M QE   +
Sbjct: 150 LVRMYAKCGSVDEARRVFDNRLLRKNIVSWTTMVSAYVERGCLEQALTLFIEMLQEGV-A 208

Query: 351 VDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIV 410
            + IT VS+L A      L+   ++H +  ++G      V N LI  Y +CG+++ A +V
Sbjct: 209 PNEITYVSVLNACD----LDAGRKVHRLIEQSGLDSDAFVGNALIKMYRRCGSLEDASLV 264

Query: 411 FEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           F+ +   R+++ WN++I GY      +  L  + KM   G   D  T L++L+AC 
Sbjct: 265 FDGIAD-RNLLVWNSMIAGYASLNEAQGTLEFFRKMLLDGWKGDKHTLLTVLDACA 319



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 116/430 (26%), Positives = 206/430 (47%), Gaps = 33/430 (7%)

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPYLVSCNAI-- 121
            +L  S T+  +  +      L   + +H  +V  GL+ +L    G+ + YLV C ++  
Sbjct: 3   AVLTISTTVTDLAASLRACHTLPKGKELHAQIVSDGLDKNLHLANGIVHMYLV-CKSVDN 61

Query: 122 -------------------VAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA 162
                              +A +      Q+A  LF+     G+VP+ VT+LTVI  C  
Sbjct: 62  ARKVFDKMASRDAGLWAPMMAAYARVGHLQEATGLFHRMLDEGVVPDRVTLLTVINACSE 121

Query: 163 LGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIF-REMECKDVISWTR 221
            GS A    +H           V V  +++ MY+    +D A ++F   +  K+++SWT 
Sbjct: 122 SGSLAEGRRVHRRIQGSDFEWSVDVGTALVRMYAKCGSVDEARRVFDNRLLRKNIVSWTT 181

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+  +V+      AL +F EM +  +  + +  ++++  NA   DL  G+++H  +   G
Sbjct: 182 MVSAYVERGCLEQALTLFIEMLQEGVAPNEITYVSVL--NAC--DLDAGRKVHRLIEQSG 237

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           L S+  + N++I MY +CG L+ +  VF+ I +++L+ W ++I+GY     A+  L  F 
Sbjct: 238 LDSDAFVGNALIKMYRRCGSLEDASLVFDGIADRNLLVWNSMIAGYASLNEAQGTLEFFR 297

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEI-CLQ-LHGIAFEAGFPRYRSVQNCLISSYS 399
           KM  +     D  TL+++L A  + + L+   LQ +H +A E+G      V   L+   S
Sbjct: 298 KMLLDGWKG-DKHTLLTVLDACAKSSTLQASSLQTIHDLAVESGLDSDTLVGTALVKIKS 356

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           + G+   A +VF+ +   +D+ +WN +   Y  +G    A+ L  +M      PD  T++
Sbjct: 357 EQGDRKSAKMVFDSL-RAKDLAAWNCMFSAYAKHGRLRDAMELQEQMKLDQVRPDKVTFV 415

Query: 460 SILNACGHAG 469
           SIL+AC   G
Sbjct: 416 SILSACTATG 425



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/270 (30%), Positives = 140/270 (51%), Gaps = 15/270 (5%)

Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISG 326
           L +GK+LHAQ+V  GL   L L+N I+ MY  C  +D++R VF+++  +    W  +++ 
Sbjct: 24  LPKGKELHAQIVSDGLDKNLHLANGIVHMYLVCKSVDNARKVFDKMASRDAGLWAPMMAA 83

Query: 327 YVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPR 386
           Y + G  +EA   F +M  E     D +TL++++ A  E  +L    ++H     + F  
Sbjct: 84  YARVGHLQEATGLFHRMLDEGV-VPDRVTLLTVINACSESGSLAEGRRVHRRIQGSDFEW 142

Query: 387 YRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM 446
              V   L+  Y+KCG+VD A  VF+     +++VSW T++  Y   G  E AL L+ +M
Sbjct: 143 SVDVGTALVRMYAKCGSVDEARRVFDNRLLRKNIVSWTTMVSAYVERGCLEQALTLFIEM 202

Query: 447 TETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGC 506
            + G  P+  TY+S+LNAC       D     +++IE++ +         ++ +  R G 
Sbjct: 203 LQEGVAPNEITYVSVLNACDL-----DAGRKVHRLIEQSGLDSDAFVGNALIKMYRRCGS 257

Query: 507 LSDAS----GLAGKLLEGMGPNIWRALLSG 532
           L DAS    G+A + L      +W ++++G
Sbjct: 258 LEDASLVFDGIADRNLL-----VWNSMIAG 282


>gi|357167614|ref|XP_003581249.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like
            [Brachypodium distachyon]
          Length = 1430

 Score =  247 bits (630), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 176/628 (28%), Positives = 284/628 (45%), Gaps = 125/628 (19%)

Query: 11   LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
            L+S Y + G++ +A  +FDEIP                                    PN
Sbjct: 801  LVSAYARLGRLPDARRVFDEIPH-----------------------------------PN 825

Query: 71   SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKL 130
            +F+   +L A A L     AR+             LF  + +P   S NA++A    +  
Sbjct: 826  TFSYNALLSAHARLGRPADARA-------------LFHAIPDPDQCSYNAVIAALAQHSR 872

Query: 131  FQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNS 190
               A+L          V NA +  + +  C A         +H L  K     DV + ++
Sbjct: 873  GADALLFLAAMHADDFVLNAYSFASALSACAAEKDSRTGVQVHALVSKSPHAKDVYIGSA 932

Query: 191  VLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICD 250
            +LDMY+     + A ++F  M  ++++SW  ++  +      G+AL +F  M K+  + D
Sbjct: 933  LLDMYAKCEWPEEARRVFEAMPERNIVSWNSLITCYEQNGPVGEALVLFVSMMKAGFVPD 992

Query: 251  TVALLNLISVNAILGDLKRGKQLHAQVVLGG-LQSELRLSNSIIAMYSKCG--------- 300
             V L +++S  A L   + G+Q+HA+VV     + ++ LSN+++ MY+KCG         
Sbjct: 993  EVTLASVMSACAGLAADREGRQVHARVVKSDRFREDMVLSNALVDMYAKCGRTRAARCVF 1052

Query: 301  DLDSSRSV----------------------FNQITEKSLVSWTAIISGYVQNGCAREALN 338
            D  +SRSV                      F+Q+ EK++++W  +I+ Y QNG   EAL 
Sbjct: 1053 DRMASRSVVSETSLITGYARSANVEDAQMVFSQMVEKNVIAWNVLIAAYAQNGEEEEALR 1112

Query: 339  QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLH------GIAFEAGFPRYRSVQN 392
             F+++++E        T  ++L A G +A L++  Q H      G  F+ G      V N
Sbjct: 1113 LFVRLKRESVWPT-HYTYGNVLNACGNVADLQLGQQAHVHVLKEGFRFDFGPESDVFVGN 1171

Query: 393  CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV 452
             L+  Y K G++D    VFE M   RD VSWN +I G+  NG  + AL L+ +M  + E 
Sbjct: 1172 SLVDMYLKTGSIDDGAKVFERMA-ARDNVSWNAMIVGHAQNGRAKDALHLFERMLCSKES 1230

Query: 453  PDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASG 512
            PDS T + +L+ACGH+GL  +G   F  M E++ + PSQ+HY C++DLL RAG L +   
Sbjct: 1231 PDSVTMIGVLSACGHSGLVEEGRRYFRSMTEDHGIIPSQDHYTCMIDLLGRAGHLKEVEE 1290

Query: 513  LAGKLLEGMGPN--IWRALLSGCVLH---------------------------------V 537
            L  ++   M P+  +W +LL  C LH                                 +
Sbjct: 1291 LIKEM--SMEPDAVLWASLLGSCRLHKNVEMGEWAAGKLFELDPRNSGPYVLLSNMYAEL 1348

Query: 538  GRFQDAEALRSGSQKKGIIKIPGISFLN 565
            G++ D   +RS  + +G+ K PG S++ 
Sbjct: 1349 GKWADVFRVRSSMKHRGVSKQPGCSWIE 1376



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 154/609 (25%), Positives = 270/609 (44%), Gaps = 59/609 (9%)

Query: 19  GKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVL 78
           G + +A  LFD +P ++  SW+ +I   S  G   +++  FS+M   G+ P   TM  VL
Sbjct: 99  GSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNSLGIRPKDATMASVL 158

Query: 79  VAAAGLQNLELARSIHGLMVKFGLESDL----------------------FEGLKNPYLV 116
              A   +L  AR +HG + K   +S++                      F+ +  P  +
Sbjct: 159 SCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADARRAFDDILEPNAI 218

Query: 117 SCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLT 176
           S N IV  +    +   AV +F     +G+ P   T+   +  C    +      IH   
Sbjct: 219 SWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDNNALEEGRCIHAFV 278

Query: 177 IKLGLILDVSVNNSVLDMYSCLMDLDA-------------------------------AI 205
           ++ G    V V +SV+DMY+    +DA                               A 
Sbjct: 279 LRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSGLASCGRIADAK 338

Query: 206 QIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILG 265
           ++F  M+ ++++SW  M+  ++       AL +F++MR+     D + L +++S    + 
Sbjct: 339 RVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLGSVLSACTGIL 398

Query: 266 DLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRS--VFNQITEKSLVSWTAI 323
           D+ +G+++HA  +  G  S   L N+++ MYSKCG L S+    +F   +E+   SW ++
Sbjct: 399 DIGKGEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLLLFEMGSERDSYSWNSL 458

Query: 324 ISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG 383
           ISGY ++  +  AL    KM+ E T   +  T  S L A   +  L+  +Q+H      G
Sbjct: 459 ISGYERHSMSEAALYALTKMQSEVTP--NQSTFSSALAACANIFLLKQGMQIHAYMIRKG 516

Query: 384 FPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALY 443
           +     +++ LI  Y KC   D +  +FE     RDV+ WN++I+G   +G GE  L L+
Sbjct: 517 YEIDDILRSVLIDMYCKCRQFDYSIRIFEARPS-RDVILWNSMIFGCAYSGKGEYGLDLF 575

Query: 444 HKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLAR 503
            +M + G   DS T+L  L +C   G    G   F  M++E+ + P  EHY C+++LL +
Sbjct: 576 DEMQKQGIKADSVTFLGALVSCISEGHVRLGRSYFTLMMDES-IIPRIEHYECMIELLGK 634

Query: 504 AGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISF 563
            GC+ +       +       +W  +   C  +  R     A +  +    +  +  ++ 
Sbjct: 635 HGCMVELEDFVEHMPFEPTTAMWLRIFDCCREYGNRKLGERAAKCINDSNPLTPVQFVAT 694

Query: 564 LNSTSRDFG 572
           ++  S D G
Sbjct: 695 VDYESNDGG 703



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 115/512 (22%), Positives = 225/512 (43%), Gaps = 73/512 (14%)

Query: 1    PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
            P  + ++ + LLS + + G+  +A  LF  IP+ +  S++ VI   + +     ++   +
Sbjct: 822  PHPNTFSYNALLSAHARLGRPADARALFHAIPDPDQCSYNAVIAALAQHSRGADALLFLA 881

Query: 61   HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--------------- 105
             M     + N+++    L A A  ++      +H L+ K     D               
Sbjct: 882  AMHADDFVLNAYSFASALSACAAEKDSRTGVQVHALVSKSPHAKDVYIGSALLDMYAKCE 941

Query: 106  -------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                   +FE +    +VS N+++  +  N    +A++LF     +G VP+ VT+ +V+ 
Sbjct: 942  WPEEARRVFEAMPERNIVSWNSLITCYEQNGPVGEALVLFVSMMKAGFVPDEVTLASVMS 1001

Query: 159  GCVALGSRALCELIHGLTIKLGLIL-DVSVNNSVLDMYS---------CLMD-------- 200
             C  L +      +H   +K      D+ ++N+++DMY+         C+ D        
Sbjct: 1002 ACAGLAADREGRQVHARVVKSDRFREDMVLSNALVDMYAKCGRTRAARCVFDRMASRSVV 1061

Query: 201  --------------LDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSR 246
                          ++ A  +F +M  K+VI+W  ++  +       +AL++F  +++  
Sbjct: 1062 SETSLITGYARSANVEDAQMVFSQMVEKNVIAWNVLIAAYAQNGEEEEALRLFVRLKRES 1121

Query: 247  IICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL------QSELRLSNSIIAMYSKCG 300
            +        N+++    + DL+ G+Q H  V+  G       +S++ + NS++ MY K G
Sbjct: 1122 VWPTHYTYGNVLNACGNVADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTG 1181

Query: 301  DLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSIL 360
             +D    VF ++  +  VSW A+I G+ QNG A++AL+ F +M   K +S DS+T++ +L
Sbjct: 1182 SIDDGAKVFERMAARDNVSWNAMIVGHAQNGRAKDALHLFERMLCSK-ESPDSVTMIGVL 1240

Query: 361  TASGELAALEICLQ-LHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRD 419
            +A G    +E   +    +  + G    +    C+I    + G++     + +EM    D
Sbjct: 1241 SACGHSGLVEEGRRYFRSMTEDHGIIPSQDHYTCMIDLLGRAGHLKEVEELIKEMSMEPD 1300

Query: 420  VVSWNTIIYGYGVNGHGETALALYHKMTETGE 451
             V W +++        G   L   HK  E GE
Sbjct: 1301 AVLWASLL--------GSCRL---HKNVEMGE 1321



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 117/252 (46%), Gaps = 31/252 (12%)

Query: 284  SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA------- 336
            +E  L N++++ Y++ G L  +R VF++I   +  S+ A++S + + G   +A       
Sbjct: 793  AETFLLNTLVSAYARLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADARALFHAI 852

Query: 337  -------LNQFIKMRQEKTDSVDSITLVS-------ILTASGELAALEIC---------L 373
                    N  I    + +   D++  ++       +L A    +AL  C         +
Sbjct: 853  PDPDQCSYNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACAAEKDSRTGV 912

Query: 374  QLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVN 433
            Q+H +  ++   +   + + L+  Y+KC   + A  VFE M   R++VSWN++I  Y  N
Sbjct: 913  QVHALVSKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMP-ERNIVSWNSLITCYEQN 971

Query: 434  GHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEH 493
            G    AL L+  M + G VPD  T  S+++AC       +G  +  ++++ ++ +     
Sbjct: 972  GPVGEALVLFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVKSDRFREDMVL 1031

Query: 494  YGCVVDLLARAG 505
               +VD+ A+ G
Sbjct: 1032 SNALVDMYAKCG 1043



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 68/298 (22%), Positives = 125/298 (41%), Gaps = 31/298 (10%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  D   S+ ++S     G+I +A+ +F+ + E+N+VSW+ ++ GY  +     ++  F 
Sbjct: 314 PMKDMVMSTSIVSGLASCGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQ 373

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--------------- 105
            M       ++ T+  VL A  G+ ++     +H   +K G  S                
Sbjct: 374 QMRQETREFDAITLGSVLSACTGILDIGKGEEVHAFAIKCGFFSSPILKNALVRMYSKCG 433

Query: 106 ---------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTV 156
                    LFE        S N++++G+  + + + A+      + S + PN  T  + 
Sbjct: 434 CLRSAERLLLFEMGSERDSYSWNSLISGYERHSMSEAALYALTKMQ-SEVTPNQSTFSSA 492

Query: 157 IRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
           +  C  +        IH   I+ G  +D  + + ++DMY      D +I+IF     +DV
Sbjct: 493 LAACANIFLLKQGMQIHAYMIRKGYEIDDILRSVLIDMYCKCRQFDYSIRIFEARPSRDV 552

Query: 217 ISWTRMMGLFVDFEYAGD---ALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGK 271
           I W  M+       Y+G     L +F EM+K  I  D+V  L  +      G ++ G+
Sbjct: 553 ILWNSMI---FGCAYSGKGEYGLDLFDEMQKQGIKADSVTFLGALVSCISEGHVRLGR 607



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 115/273 (42%), Gaps = 13/273 (4%)

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
           L N  I   + CG +  +R +F+ +  +   SW AII+   + G   EAL+ F  M    
Sbjct: 87  LFNRAIESLAACGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNSLG 146

Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
               D+ T+ S+L+   E   L    QLHG   +  F     +   L+  Y  C  +  A
Sbjct: 147 IRPKDA-TMASVLSCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADA 205

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
              F+++    + +SWN I+  Y + G G+ A+ ++ +M   G  P   T    + AC  
Sbjct: 206 RRAFDDI-LEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRD 264

Query: 468 AGLTNDGLVIFNQMIEENKVKPSQEHY----GCVVDLLARAGCLSDASGLAGKLLEGMGP 523
                +G  I   ++     +   EH+      VVD+ A+ G +  A  L    L  M  
Sbjct: 265 NNALEEGRCIHAFVL-----RHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFN--LAPMKD 317

Query: 524 NIWRALLSGCVLHVGRFQDAEALRSGSQKKGII 556
            +    +   +   GR  DA+ +  G +++ ++
Sbjct: 318 MVMSTSIVSGLASCGRIADAKRVFEGMKERNLV 350


>gi|242064134|ref|XP_002453356.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
 gi|241933187|gb|EES06332.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
          Length = 807

 Score =  247 bits (630), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 163/618 (26%), Positives = 294/618 (47%), Gaps = 100/618 (16%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           LL  Y K G + +A  LFD +   N VS++ ++ G + +G  + +++ F+ M  S +  +
Sbjct: 183 LLGMYTKCGSVADAVRLFDWMSSPNEVSFTAMMGGLAQSGAVDDALRLFARMSRSAIRVD 242

Query: 71  SFTMVGVL----VAAAGLQN----LELARSIHGLMVKFGLESD----------------- 105
              +  VL     A AG  N    + LA+SIH L+V+ G +SD                 
Sbjct: 243 PVAVSSVLGACAQACAGDYNVARAIRLAQSIHALVVRKGFDSDQHVGNSLIDMYAKGMKM 302

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +FE + +  +VS N +V G+     +++A+ + +  + SG  PN VT   ++  C
Sbjct: 303 DEAMKVFESMSSVSIVSWNILVTGYGQLGCYERALEVLDLMQESGFEPNEVTYSNMLASC 362

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
           +                                      D+ +A  +F ++    V +W 
Sbjct: 363 IKA-----------------------------------RDVPSARAMFDKISKPSVTTWN 387

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++  +   E   D +++FR M+   +  D   L  ++S  + LG L+ GKQ+H+  V  
Sbjct: 388 TLLSGYGQEELHQDTIELFRRMQHQNVQPDRTTLAVILSTCSRLGILELGKQVHSASVKL 447

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
            L +++ +++ +I MYSKCG +  ++ +FN +TE+ +V W ++ISG   +    EA + F
Sbjct: 448 LLHNDMFVASGLIDMYSKCGQVGIAQIIFNMMTERDVVCWNSMISGLAIHSLNEEAFDFF 507

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            +MR+      +S +  S++ +   L+++    Q+H    + G+ +   V + LI  Y+K
Sbjct: 508 KQMRENGMFPTES-SYASMINSCARLSSIPQGRQIHAQVLKDGYDQNVYVGSSLIDMYAK 566

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CGN+D A + F  M  ++++V+WN +I+GY  NG GE A+ L+  M  T + PDS T+++
Sbjct: 567 CGNMDDARLFFNCM-IVKNIVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIA 625

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           +L  C H+GL ++ +  FN M     ++P  EHY C++D L RAG  ++   +  K+   
Sbjct: 626 VLTGCSHSGLVDEAIAYFNSMESNYGIRPLVEHYTCLIDALGRAGRFAEVVAVIDKMPYK 685

Query: 521 MGPNIWRALLSGCVLH---------------------------------VGRFQDAEALR 547
               +W  LL+ CV+H                                 +GR  DA A+R
Sbjct: 686 DDAILWEVLLAACVVHHNAELGEFAAKHLFRLDPKNPSPYVLLSNIYATLGRHGDASAVR 745

Query: 548 SGSQKKGIIKIPGISFLN 565
           +    +G++K  G S++N
Sbjct: 746 ALMSSRGVVKGRGYSWVN 763



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 143/543 (26%), Positives = 249/543 (45%), Gaps = 76/543 (13%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P +  YN++  +S   ++G +  A +L   +P++N VSW+ VI   + +    ++++ + 
Sbjct: 74  PNVYSYNAA--ISAACRAGDLAAARDLLGRMPDRNAVSWNTVIAAVARSDSPGEALEMYR 131

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--------------- 105
            M+  GL P +FT+  VL A   +  L+  R  HGL VK GL+ +               
Sbjct: 132 GMLQEGLAPTNFTLASVLSACGAVAALDDGRRCHGLAVKVGLDGNQFVENGLLGMYTKCG 191

Query: 106 -------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                  LF+ + +P  VS  A++ G   +     A+ LF     S +  + V + +V+ 
Sbjct: 192 SVADAVRLFDWMSSPNEVSFTAMMGGLAQSGAVDDALRLFARMSRSAIRVDPVAVSSVLG 251

Query: 159 GC---------VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFR 209
            C         VA   R L + IH L ++ G   D  V NS++DMY+  M +D A+++F 
Sbjct: 252 ACAQACAGDYNVARAIR-LAQSIHALVVRKGFDSDQHVGNSLIDMYAKGMKMDEAMKVFE 310

Query: 210 EMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKR 269
            M    ++SW  ++  +        AL++   M++S                        
Sbjct: 311 SMSSVSIVSWNILVTGYGQLGCYERALEVLDLMQES------------------------ 346

Query: 270 GKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQ 329
                     G   +E+  SN ++A   K  D+ S+R++F++I++ S+ +W  ++SGY Q
Sbjct: 347 ----------GFEPNEVTYSN-MLASCIKARDVPSARAMFDKISKPSVTTWNTLLSGYGQ 395

Query: 330 NGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS 389
               ++ +  F +M+ +     D  TL  IL+    L  LE+  Q+H  + +        
Sbjct: 396 EELHQDTIELFRRMQHQNVQP-DRTTLAVILSTCSRLGILELGKQVHSASVKLLLHNDMF 454

Query: 390 VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
           V + LI  YSKCG V +A I+F  M   RDVV WN++I G  ++   E A   + +M E 
Sbjct: 455 VASGLIDMYSKCGQVGIAQIIFNMMT-ERDVVCWNSMISGLAIHSLNEEAFDFFKQMREN 513

Query: 450 GEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY--GCVVDLLARAGCL 507
           G  P  S+Y S++N+C        G  I  Q++++      Q  Y    ++D+ A+ G +
Sbjct: 514 GMFPTESSYASMINSCARLSSIPQGRQIHAQVLKDGY---DQNVYVGSSLIDMYAKCGNM 570

Query: 508 SDA 510
            DA
Sbjct: 571 DDA 573



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 112/435 (25%), Positives = 211/435 (48%), Gaps = 15/435 (3%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L+  Y K  K+ EA  +F+ +   ++VSW+I++ GY   G +E++++    M 
Sbjct: 285 DQHVGNSLIDMYAKGMKMDEAMKVFESMSSVSIVSWNILVTGYGQLGCYERALEVLDLMQ 344

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVA 123
            SG  PN  T   +L +    +++  AR+             +F+ +  P + + N +++
Sbjct: 345 ESGFEPNEVTYSNMLASCIKARDVPSARA-------------MFDKISKPSVTTWNTLLS 391

Query: 124 GFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLIL 183
           G+   +L Q  + LF   +   + P+  T+  ++  C  LG   L + +H  ++KL L  
Sbjct: 392 GYGQEELHQDTIELFRRMQHQNVQPDRTTLAVILSTCSRLGILELGKQVHSASVKLLLHN 451

Query: 184 DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMR 243
           D+ V + ++DMYS    +  A  IF  M  +DV+ W  M+          +A   F++MR
Sbjct: 452 DMFVASGLIDMYSKCGQVGIAQIIFNMMTERDVVCWNSMISGLAIHSLNEEAFDFFKQMR 511

Query: 244 KSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLD 303
           ++ +     +  ++I+  A L  + +G+Q+HAQV+  G    + + +S+I MY+KCG++D
Sbjct: 512 ENGMFPTESSYASMINSCARLSSIPQGRQIHAQVLKDGYDQNVYVGSSLIDMYAKCGNMD 571

Query: 304 SSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTAS 363
            +R  FN +  K++V+W  +I GY QNG   +A+  F  M   K    DS+T +++LT  
Sbjct: 572 DARLFFNCMIVKNIVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKP-DSVTFIAVLTGC 630

Query: 364 GELAAL-EICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVS 422
                + E     + +    G         CLI +  + G       V ++M +  D + 
Sbjct: 631 SHSGLVDEAIAYFNSMESNYGIRPLVEHYTCLIDALGRAGRFAEVVAVIDKMPYKDDAIL 690

Query: 423 WNTIIYGYGVNGHGE 437
           W  ++    V+ + E
Sbjct: 691 WEVLLAACVVHHNAE 705



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 109/433 (25%), Positives = 189/433 (43%), Gaps = 62/433 (14%)

Query: 46  YSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD 105
           YS++G    +++AF  +      PN ++    + AA    +L  AR             D
Sbjct: 55  YSLSGLPCHALRAFRALPR----PNVYSYNAAISAACRAGDLAAAR-------------D 97

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           L   + +   VS N ++A    +    +A+ ++      GL P   T+ +V+  C A+ +
Sbjct: 98  LLGRMPDRNAVSWNTVIAAVARSDSPGEALEMYRGMLQEGLAPTNFTLASVLSACGAVAA 157

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
                  HGL +K+GL  +  V N +L MY+    +  A+++F  M   + +S+T MMG 
Sbjct: 158 LDDGRRCHGLAVKVGLDGNQFVENGLLGMYTKCGSVADAVRLFDWMSSPNEVSFTAMMGG 217

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLIS--VNAILGD------LKRGKQLHAQV 277
                   DAL++F  M +S I  D VA+ +++     A  GD      ++  + +HA V
Sbjct: 218 LAQSGAVDDALRLFARMSRSAIRVDPVAVSSVLGACAQACAGDYNVARAIRLAQSIHALV 277

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           V  G  S+  + NS+I MY+K   +D +  VF  ++  S+VSW  +++GY Q GC   AL
Sbjct: 278 VRKGFDSDQHVGNSLIDMYAKGMKMDEAMKVFESMSSVSIVSWNILVTGYGQLGCYERAL 337

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
                M+                                    E+GF       + +++S
Sbjct: 338 EVLDLMQ------------------------------------ESGFEPNEVTYSNMLAS 361

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
             K  +V  A  +F+++     V +WNT++ GYG     +  + L+ +M      PD +T
Sbjct: 362 CIKARDVPSARAMFDKIS-KPSVTTWNTLLSGYGQEELHQDTIELFRRMQHQNVQPDRTT 420

Query: 458 YLSILNACGHAGL 470
              IL+ C   G+
Sbjct: 421 LAVILSTCSRLGI 433


>gi|4049345|emb|CAA22570.1| putative protein [Arabidopsis thaliana]
 gi|7270147|emb|CAB79960.1| putative protein [Arabidopsis thaliana]
          Length = 688

 Score =  247 bits (630), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 166/552 (30%), Positives = 271/552 (49%), Gaps = 32/552 (5%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ ++  Y K+G+   A  +F+ + + +VVSW+ ++ G+  N   + ++     M  +G+
Sbjct: 39  SNAVMGMYRKAGRFDNALCIFENLVDPDVVSWNTILSGFDDN---QIALNFVVRMKSAGV 95

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------FEGLKN 112
           + ++FT    L    G +   L   +   +VK GLESDL               F G + 
Sbjct: 96  VFDAFTYSTALSFCVGSEGFLLGLQLQSTVVKTGLESDLVVGNSFITMYSRSGSFRGARR 155

Query: 113 PY-------LVSCNAIVAGFINNKLFQ-QAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
            +       ++S N++++G      F  +AV++F      G+  + V+  +VI  C    
Sbjct: 156 VFDEMSFKDMISWNSLLSGLSQEGTFGFEAVVIFRDMMREGVELDHVSFTSVITTCCHET 215

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
              L   IHGL IK G    + V N ++  YS    L+A   +F +M  ++V+SWT M+ 
Sbjct: 216 DLKLARQIHGLCIKRGYESLLEVGNILMSRYSKCGVLEAVKSVFHQMSERNVVSWTTMIS 275

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
              D     DA+ IF  MR   +  + V  + LI+       +K G ++H   +  G  S
Sbjct: 276 SNKD-----DAVSIFLNMRFDGVYPNEVTFVGLINAVKCNEQIKEGLKIHGLCIKTGFVS 330

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           E  + NS I +Y+K   L+ ++  F  IT + ++SW A+ISG+ QNG + EAL  F+   
Sbjct: 331 EPSVGNSFITLYAKFEALEDAKKAFEDITFREIISWNAMISGFAQNGFSHEALKMFLSAA 390

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
            E   +  +   V    A  E  +++   + H    + G      V + L+  Y+K GN+
Sbjct: 391 AETMPNEYTFGSVLNAIAFAEDISVKQGQRCHAHLLKLGLNSCPVVSSALLDMYAKRGNI 450

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           D +  VF EM      V W +II  Y  +G  ET + L+HKM +    PD  T+LS+L A
Sbjct: 451 DESEKVFNEMSQKNQFV-WTSIISAYSSHGDFETVMNLFHKMIKENVAPDLVTFLSVLTA 509

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C   G+ + G  IFN MIE   ++PS EHY C+VD+L RAG L +A  L  ++  G G +
Sbjct: 510 CNRKGMVDKGYEIFNMMIEVYNLEPSHEHYSCMVDMLGRAGRLKEAEELMSEVPGGPGES 569

Query: 525 IWRALLSGCVLH 536
           + +++L  C LH
Sbjct: 570 MLQSMLGSCRLH 581



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 115/393 (29%), Positives = 188/393 (47%), Gaps = 31/393 (7%)

Query: 149 NAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIF 208
           + VT+   ++ C     R  C+ IHG +   G    V V+N+V+ MY      D A+ IF
Sbjct: 2   DEVTLCLALKACRGDLKRG-CQ-IHGFSTTSGFTSFVCVSNAVMGMYRKAGRFDNALCIF 59

Query: 209 REMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLK 268
             +   DV+SW  ++  F D +    AL     M+ + ++ D       +S         
Sbjct: 60  ENLVDPDVVSWNTILSGFDDNQI---ALNFVVRMKSAGVVFDAFTYSTALSFCVGSEGFL 116

Query: 269 RGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYV 328
            G QL + VV  GL+S+L + NS I MYS+ G    +R VF++++ K ++SW +++SG  
Sbjct: 117 LGLQLQSTVVKTGLESDLVVGNSFITMYSRSGSFRGARRVFDEMSFKDMISWNSLLSGLS 176

Query: 329 QNGC-AREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRY 387
           Q G    EA+  F  M +E  + +D ++  S++T       L++  Q+HG+  + G+   
Sbjct: 177 QEGTFGFEAVVIFRDMMREGVE-LDHVSFTSVITTCCHETDLKLARQIHGLCIKRGYESL 235

Query: 388 RSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMT 447
             V N L+S YSKCG ++    VF +M   R+VVSW T+I     + + + A++++  M 
Sbjct: 236 LEVGNILMSRYSKCGVLEAVKSVFHQMS-ERNVVSWTTMI-----SSNKDDAVSIFLNMR 289

Query: 448 ETGEVPDSSTYLSILNA--CGHA---GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLA 502
             G  P+  T++ ++NA  C      GL   GL I    + E  V  S       + L A
Sbjct: 290 FDGVYPNEVTFVGLINAVKCNEQIKEGLKIHGLCIKTGFVSEPSVGNS------FITLYA 343

Query: 503 RAGCLSDASGLAGKLLEGMGPN---IWRALLSG 532
           +   L DA     K  E +       W A++SG
Sbjct: 344 KFEALEDAK----KAFEDITFREIISWNAMISG 372



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/222 (20%), Positives = 100/222 (45%), Gaps = 31/222 (13%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           +P   +  ++ Y K   +++A+  F++I  + ++SW+ +I G++ NGF  +++K F    
Sbjct: 331 EPSVGNSFITLYAKFEALEDAKKAFEDITFREIISWNAMISGFAQNGFSHEALKMFLSAA 390

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLEL--ARSIHGLMVKFGLES----------------- 104
            +  +PN +T   VL A A  +++ +   +  H  ++K GL S                 
Sbjct: 391 -AETMPNEYTFGSVLNAIAFAEDISVKQGQRCHAHLLKLGLNSCPVVSSALLDMYAKRGN 449

Query: 105 -----DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                 +F  +         +I++ + ++  F+  + LF+      + P+ VT L+V+  
Sbjct: 450 IDESEKVFNEMSQKNQFVWTSIISAYSSHGDFETVMNLFHKMIKENVAPDLVTFLSVLTA 509

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDL 201
           C   G      +  G  I   ++++V       + YSC++D+
Sbjct: 510 CNRKGM-----VDKGYEI-FNMMIEVYNLEPSHEHYSCMVDM 545


>gi|357127001|ref|XP_003565175.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Brachypodium distachyon]
          Length = 849

 Score =  247 bits (630), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 176/572 (30%), Positives = 284/572 (49%), Gaps = 49/572 (8%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           DP+  + L+S Y + G++ +AE +F+ +  +N+VSW+ ++   +      + ++ F   +
Sbjct: 98  DPFVGNSLVSMYGRCGRVDDAEKVFEGMAGRNLVSWNALMAAVADP---RRGLELFRDCL 154

Query: 64  --LSGLL-PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES---------DLFEG-- 109
             L G   P+  T+V VL   A L   E  R++HGL VK G ++         D++    
Sbjct: 155 EDLGGTAAPDEATLVTVLPMCAALAWPETGRAVHGLAVKSGWDAAPRVSNVLVDMYAKCG 214

Query: 110 ---------LKNPY-----LVSCNAIVAGFINNKLFQQAVLLFNFFRG-----SGLVPNA 150
                    L+ P      +VS N ++ G+  N    +A   F   R       G+  + 
Sbjct: 215 EMADAECAFLEAPPGAGRNVVSWNVMLGGYARNG---EAGAAFGLLREMQMEERGVPADE 271

Query: 151 VTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVS-VNNSVLDMYSCLMDLDAAIQIFR 209
           +TML+V+  C  L   A    +H   ++ GL L    V N+++  Y     L  A ++F 
Sbjct: 272 ITMLSVLPVCSGLPELAKLRELHAFVVRRGLHLTGDMVPNALIAAYGRCGCLLHACRVFD 331

Query: 210 EMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIIC----DTVALLNLISVNAILG 265
            +  K V SW  ++G       A  A+++FREM  +   C    D  ++ +L+     L 
Sbjct: 332 GICSKMVSSWNALIGAHAQNGEASAAIELFREMTNA---CGQKPDWFSIGSLLLACGNLK 388

Query: 266 DLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIIS 325
            L  GK  H  ++  GL+ +  +  S++++Y +CG    +R +F+ + EK  VSW  +I+
Sbjct: 389 HLLHGKAAHGFILRNGLEKDSFIRVSLLSVYIQCGRESLARVLFDAVEEKDEVSWNTMIA 448

Query: 326 GYVQNGCAREALNQFIKMRQEKTDSVDSI-TLVSILTASGELAALEICLQLHGIAFEAGF 384
           GY QNG   E+L  F +M+ +K     S+    S L A  EL A+ +  ++H  A +A  
Sbjct: 449 GYSQNGLPGESLQLFREMQSKKGGHWPSLLAATSALVACSELPAVRLGKEMHCFALKADL 508

Query: 385 PRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH 444
                + + +I  YSKCG+VD A + F+ +   +D VSW  +I GY VNG G+ A+ LY 
Sbjct: 509 CEDSFLSSSIIDMYSKCGSVDDARVFFDRLK-AKDAVSWTVMITGYAVNGRGKEAVGLYD 567

Query: 445 KMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARA 504
           KM   G  PD  TYL +L ACGHAG+  DGL  F +M    K++   EHY CV+ +L+RA
Sbjct: 568 KMGREGMEPDGFTYLGLLMACGHAGMLEDGLCFFQEMRNLPKIEAKLEHYACVIGMLSRA 627

Query: 505 GCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
           G  +DA  L   + E     I  ++LS C +H
Sbjct: 628 GRFADAVALMEVMPEEPDAKILSSVLSACHMH 659



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 147/572 (25%), Positives = 258/572 (45%), Gaps = 60/572 (10%)

Query: 35  NVVSWSIVIHGYSINGFHEKSMKAFSHMMLS--GLLPNSFTMVGVLVAAAGLQNLELARS 92
           ++  W+ ++   S  G H  ++     ++ +  G+ P+ FT+   L +  G    +  R 
Sbjct: 29  SLPQWNGLLADLSRAGRHADALAILPRLLAASDGVAPDRFTLPPALKSCRG----DDGRQ 84

Query: 93  IHGLMVKFGLE-----------------------SDLFEGLKNPYLVSCNAIVAGFINNK 129
           +H +  K GL                          +FEG+    LVS NA++A   + +
Sbjct: 85  VHAVAAKLGLADGDPFVGNSLVSMYGRCGRVDDAEKVFEGMAGRNLVSWNALMAAVADPR 144

Query: 130 ----LFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDV 185
               LF+  +       G    P+  T++TV+  C AL        +HGL +K G     
Sbjct: 145 RGLELFRDCLEDL----GGTAAPDEATLVTVLPMCAALAWPETGRAVHGLAVKSGWDAAP 200

Query: 186 SVNNSVLDMYSCLMDLDAAIQIFREMEC---KDVISWTRMMGLFVDFEYAGDALKIFREM 242
            V+N ++DMY+   ++  A   F E      ++V+SW  M+G +     AG A  + REM
Sbjct: 201 RVSNVLVDMYAKCGEMADAECAFLEAPPGAGRNVVSWNVMLGGYARNGEAGAAFGLLREM 260

Query: 243 RKSR--IICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ-SELRLSNSIIAMYSKC 299
           +     +  D + +L+++ V + L +L + ++LHA VV  GL  +   + N++IA Y +C
Sbjct: 261 QMEERGVPADEITMLSVLPVCSGLPELAKLRELHAFVVRRGLHLTGDMVPNALIAAYGRC 320

Query: 300 GDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSI 359
           G L  +  VF+ I  K + SW A+I  + QNG A  A+  F +M        D  ++ S+
Sbjct: 321 GCLLHACRVFDGICSKMVSSWNALIGAHAQNGEASAAIELFREMTNACGQKPDWFSIGSL 380

Query: 360 LTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRD 419
           L A G L  L      HG     G  +   ++  L+S Y +CG   LA ++F+ +   +D
Sbjct: 381 LLACGNLKHLLHGKAAHGFILRNGLEKDSFIRVSLLSVYIQCGRESLARVLFDAVEE-KD 439

Query: 420 VVSWNTIIYGYGVNGHGETALALYHKM--TETGEVPDSSTYLSILNACGHAGLTNDG--- 474
            VSWNT+I GY  NG    +L L+ +M   + G  P      S L AC        G   
Sbjct: 440 EVSWNTMIAGYSQNGLPGESLQLFREMQSKKGGHWPSLLAATSALVACSELPAVRLGKEM 499

Query: 475 --LVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSG 532
               +   + E++ +  S      ++D+ ++ G + DA     + L+      W  +++G
Sbjct: 500 HCFALKADLCEDSFLSSS------IIDMYSKCGSVDDARVFFDR-LKAKDAVSWTVMITG 552

Query: 533 CVLHVGRFQDAEALRSGSQKKGIIKIPGISFL 564
             ++ GR ++A  L     ++G ++  G ++L
Sbjct: 553 YAVN-GRGKEAVGLYDKMGREG-MEPDGFTYL 582



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 139/530 (26%), Positives = 233/530 (43%), Gaps = 86/530 (16%)

Query: 5   PYNSSKLLSNYFKSGKIKEAENLFDEIPE---KNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           P  S+ L+  Y K G++ +AE  F E P    +NVVSW++++ GY+ NG    +      
Sbjct: 200 PRVSNVLVDMYAKCGEMADAECAFLEAPPGAGRNVVSWNVMLGGYARNGEAGAAFGLLRE 259

Query: 62  MMLS--GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE---------------- 103
           M +   G+  +  TM+ VL   +GL  L   R +H  +V+ GL                 
Sbjct: 260 MQMEERGVPADEITMLSVLPVCSGLPELAKLRELHAFVVRRGLHLTGDMVPNALIAAYGR 319

Query: 104 -------SDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLF-NFFRGSGLVPNAVTMLT 155
                    +F+G+ +  + S NA++     N     A+ LF       G  P+  ++ +
Sbjct: 320 CGCLLHACRVFDGICSKMVSSWNALIGAHAQNGEASAAIELFREMTNACGQKPDWFSIGS 379

Query: 156 VIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKD 215
           ++  C  L      +  HG  ++ GL  D  +  S+L +Y        A  +F  +E KD
Sbjct: 380 LLLACGNLKHLLHGKAAHGFILRNGLEKDSFIRVSLLSVYIQCGRESLARVLFDAVEEKD 439

Query: 216 VISWTRMMGLFVDFEYAGDALKIFREMRKSR------IICDTVALLNLISVNAILGDLKR 269
            +SW  M+  +      G++L++FREM+  +      ++  T AL+    + A+    + 
Sbjct: 440 EVSWNTMIAGYSQNGLPGESLQLFREMQSKKGGHWPSLLAATSALVACSELPAV----RL 495

Query: 270 GKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQ 329
           GK++H   +   L  +  LS+SII MYSKCG +D +R  F+++  K  VSWT +I+GY  
Sbjct: 496 GKEMHCFALKADLCEDSFLSSSIIDMYSKCGSVDDARVFFDRLKAKDAVSWTVMITGYAV 555

Query: 330 NGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS 389
           NG  +EA+  + KM +E  +  D  T + +L A G    LE      G+ F         
Sbjct: 556 NGRGKEAVGLYDKMGREGMEP-DGFTYLGLLMACGHAGMLE-----DGLCF--------- 600

Query: 390 VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVS----WNTIIYGYGVNGHGETALALYHK 445
                                F+EM  L  + +    +  +I      G    A+AL   
Sbjct: 601 ---------------------FQEMRNLPKIEAKLEHYACVIGMLSRAGRFADAVALMEV 639

Query: 446 MTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQ-EHY 494
           M E    PD+    S+L+AC   G    G  + ++++E   ++P + EHY
Sbjct: 640 MPEE---PDAKILSSVLSACHMHGEVELGKKVADKLLE---LEPHKAEHY 683



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 51/87 (58%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C D + SS ++  Y K G + +A   FD +  K+ VSW+++I GY++NG  ++++  +  
Sbjct: 509 CEDSFLSSSIIDMYSKCGSVDDARVFFDRLKAKDAVSWTVMITGYAVNGRGKEAVGLYDK 568

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLE 88
           M   G+ P+ FT +G+L+A      LE
Sbjct: 569 MGREGMEPDGFTYLGLLMACGHAGMLE 595


>gi|296089484|emb|CBI39303.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  247 bits (630), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 165/540 (30%), Positives = 278/540 (51%), Gaps = 41/540 (7%)

Query: 31  IPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELA 90
           +P++NVVSW+ +I GY+  GF+ + M  F    +S L  + FT    L       +L L 
Sbjct: 1   MPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLG 60

Query: 91  RSIHGLMVKFGLESDL----------------------FEGLKNPYLVSCNAIVAGFI-- 126
           R IH L+   GL   +                      FE       VS N+++AG++  
Sbjct: 61  RLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRI 120

Query: 127 --NNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA-LGSRALC-ELIHGLTIKLGLI 182
             N+++ +   LL    R  GL  N+  + + ++ C +   S   C +++HG  +KLGL 
Sbjct: 121 GSNDEMLR---LLVKMLR-HGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLD 176

Query: 183 LDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFE-----YAGDALK 237
           LDV V  ++LD Y+ + DL+ A +IF+ M   +V+ +  M+  F+  E     +A +A+ 
Sbjct: 177 LDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMY 236

Query: 238 IFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYS 297
           +F EM+   +        +++   + +   + GKQ+HAQ+    LQS+  + N+++ +YS
Sbjct: 237 LFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYS 296

Query: 298 KCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLV 357
             G ++     F+   +  +VSWT++I G+VQNG     L  F ++        D  T+ 
Sbjct: 297 LSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKP-DEFTIS 355

Query: 358 SILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFL 417
            +L+A   LAA++   Q+H  A + G   +  +QN  I  Y+KCG++D A + F+E    
Sbjct: 356 IMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKN- 414

Query: 418 RDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVI 477
            D+VSW+ +I     +G  + A+ L+  M  +G  P+  T+L +L AC H GL  +GL  
Sbjct: 415 PDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRY 474

Query: 478 FNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA-SGLAGKLLEGMGPNIWRALLSGCVLH 536
           F  M +++ + P+ +H  C+VDLL RAG L++A S +     EG  P +WR+LLS C +H
Sbjct: 475 FEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEG-DPVMWRSLLSACRVH 533



 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 130/511 (25%), Positives = 239/511 (46%), Gaps = 46/511 (9%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ L+  Y K G+I  A  +F+   E + VSW+ +I GY   G +++ ++    M+  GL
Sbjct: 79  TNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGL 138

Query: 68  LPNSFTMVGVLVAAAG--LQNLELARSIHGLMVKFGLESD-------------------- 105
             NS+ +   L A       ++E  + +HG  VK GL+ D                    
Sbjct: 139 NLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDA 198

Query: 106 --LFEGLKNPYLVSCNAIVAGFIN-----NKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
             +F+ + +P +V  NA++AGF+      ++   +A+ LF   +  G+ P+  T  ++++
Sbjct: 199 TKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILK 258

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C  + +    + IH    K  L  D  + N+++++YS    ++  ++ F      DV+S
Sbjct: 259 ACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVS 318

Query: 219 WTRMM-GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           WT ++ G   + ++ G  L +F E+  S    D   +  ++S  A L  +K G+Q+HA  
Sbjct: 319 WTSLIVGHVQNGQFEG-GLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYA 377

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           +  G+ +   + NS I MY+KCGD+DS+   F +     +VSW+ +IS   Q+GCA+EA+
Sbjct: 378 IKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAV 437

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGE-------LAALEICLQLHGIAFEAGFPRYRSV 390
           + F  M+     + + IT + +L A          L   EI  + HGI      P  +  
Sbjct: 438 DLFELMKGSGI-APNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHGIT-----PNVKH- 490

Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
             C++    + G +  A     + GF  D V W +++    V+   +T   +  ++ E  
Sbjct: 491 SACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSACRVHKATDTGKRVAERVIEL- 549

Query: 451 EVPDSSTYLSILNACGHAGLTNDGLVIFNQM 481
           E   +++Y+ + N    AG+      I N M
Sbjct: 550 EPEAAASYVLLYNIYNDAGIQMPATEIRNLM 580



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 84/179 (46%), Gaps = 22/179 (12%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L+  Y  SG I++    F   P+ +VVSW+ +I G+  NG  E  +  F  ++
Sbjct: 284 DEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELL 343

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL--------------------- 102
            SG  P+ FT+  +L A A L  ++    IH   +K G+                     
Sbjct: 344 FSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDID 403

Query: 103 -ESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
             +  F+  KNP +VS + +++    +   ++AV LF   +GSG+ PN +T L V+  C
Sbjct: 404 SANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVAC 462


>gi|125570343|gb|EAZ11858.1| hypothetical protein OsJ_01732 [Oryza sativa Japonica Group]
          Length = 920

 Score =  247 bits (630), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 169/590 (28%), Positives = 293/590 (49%), Gaps = 36/590 (6%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYS--INGFHEKSMKAFSHMMLSG 66
           S L+  Y K  K  ++  +F+EI  K++V+++ +I GYS  ++     + +  + M+ + 
Sbjct: 185 SSLIGLYSKFSKTNDSRGVFEEIINKDIVAYTSMITGYSETVDSIAWNAFEIATDMLQNN 244

Query: 67  LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK--FGLESDLFE-GLKNPY--------- 114
           L  N  T+V +L  A  L  L+  +S+H   ++   G+  D+ E  + N Y         
Sbjct: 245 LEVNRVTLVSLLQIAGNLGALQEGKSLHCYSIRRAIGVSDDILETSIVNFYTRCGAYQSA 304

Query: 115 ----------LVSCNAIVAGFIN-NKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
                     + S NA+++G     + F     L        + P++VT   V+  C  L
Sbjct: 305 ATVLQNSKGTVASWNALLSGLNRAGQSFNAIQYLPVMLHEHKVTPDSVTFANVLSACAEL 364

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
                   IH   I+  + +DV +  +++++Y+    +  +  +F ++  KDV+S+  M+
Sbjct: 365 CYFCFAASIHAYFIRRFIPMDVVLTTALIEVYTKCTRVMRSKYLFDQLIIKDVVSYNAMI 424

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
             ++  + A +A  +   M    +  D   +L+L++  A   DL RG+ +H   +  G  
Sbjct: 425 YGYLQNDMANEATSLLNYMMAEGVAPDFATVLSLLAAFADQRDLVRGRWIHGFAIRHGFC 484

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
           S++ + N I+ MYS CG + ++R++F+ + +K+LVSWTA++ G + NG A E + Q  ++
Sbjct: 485 SDVDVENQILYMYSACGKIAAARAIFDSLEKKNLVSWTAMMKGCLSNGHADEVV-QLFQV 543

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
            Q+  +  DS++LV+ + A  +L  L    Q+H   + +   + +   N LIS+Y+KCG 
Sbjct: 544 MQKYGEKPDSVSLVTAVQAVSDLGHLNGLKQIHCFVYRSLLEKDKITANSLISAYAKCGK 603

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           +DL+  +F  + + R++ +WN +I  Y ++G     L ++ +M E    PD  T+ ++L 
Sbjct: 604 LDLSAGLFFSLKY-RNLDTWNAMISAYAMHGFHINVLEMFKQMEEENIQPDELTFSTVLT 662

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
           AC HAGL  DG  IFN M     V P +EHYGC+VDLL RAG L D              
Sbjct: 663 ACSHAGLVKDGWRIFNSMTSVYSVLPQEEHYGCMVDLLGRAGHLEDGYKFIKLSTLKDKS 722

Query: 524 NIWRALLSGCVLH----VGRFQDAEALRSGSQKKGIIKIPG-ISFLNSTS 568
            I+ ALLS C  H    +      E L  G Q      +PG  S+ N TS
Sbjct: 723 TIFCALLSACRTHGNTRLAHAISKELLEHGPQN----PVPGQTSWQNDTS 768



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 132/565 (23%), Positives = 265/565 (46%), Gaps = 39/565 (6%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C D    SK+LS Y   G + E+  +F +I   ++  W+  +  Y   G+ E+ +  +  
Sbjct: 77  CWDVILGSKILSCYANLGALHESRLVFQKIVNDDISLWNSAMVDYFRAGYPEEVIILYKR 136

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIH-------------------GLMVKFGL 102
           + L+ +  N  T+  V+ +   L+NL L + +H                   GL  KF  
Sbjct: 137 LKLNQIGFNGKTITFVMKSCTELKNLYLGKGVHADSLKLALSGNKFVGSSLIGLYSKFSK 196

Query: 103 ESD---LFEGLKNPYLVSCNAIVAGFIN--NKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
            +D   +FE + N  +V+  +++ G+    + +   A  +      + L  N VT+++++
Sbjct: 197 TNDSRGVFEEIINKDIVAYTSMITGYSETVDSIAWNAFEIATDMLQNNLEVNRVTLVSLL 256

Query: 158 RGCVALGSRALCELIHGLTIKLGL-ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
           +    LG+    + +H  +I+  + + D  +  S+++ Y+      +A  + +  +   V
Sbjct: 257 QIAGNLGALQEGKSLHCYSIRRAIGVSDDILETSIVNFYTRCGAYQSAATVLQNSK-GTV 315

Query: 217 ISWTRMMGLFVDFEYAGDALKIFREM-RKSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
            SW  ++        + +A++    M  + ++  D+V   N++S  A L        +HA
Sbjct: 316 ASWNALLSGLNRAGQSFNAIQYLPVMLHEHKVTPDSVTFANVLSACAELCYFCFAASIHA 375

Query: 276 QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
             +   +  ++ L+ ++I +Y+KC  +  S+ +F+Q+  K +VS+ A+I GY+QN  A E
Sbjct: 376 YFIRRFIPMDVVLTTALIEVYTKCTRVMRSKYLFDQLIIKDVVSYNAMIYGYLQNDMANE 435

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLI 395
           A +    M  E   + D  T++S+L A  +   L     +HG A   GF     V+N ++
Sbjct: 436 ATSLLNYMMAEGV-APDFATVLSLLAAFADQRDLVRGRWIHGFAIRHGFCSDVDVENQIL 494

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
             YS CG +  A  +F+ +   +++VSW  ++ G   NGH +  + L+  M + GE PDS
Sbjct: 495 YMYSACGKIAAARAIFDSLE-KKNLVSWTAMMKGCLSNGHADEVVQLFQVMQKYGEKPDS 553

Query: 456 STYLSILNAC---GH-AGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDAS 511
            + ++ + A    GH  GL      ++  ++E++K+  +      ++   A+ G L  ++
Sbjct: 554 VSLVTAVQAVSDLGHLNGLKQIHCFVYRSLLEKDKITANS-----LISAYAKCGKLDLSA 608

Query: 512 GLAGKLLEGMGPNIWRALLSGCVLH 536
           GL    L+    + W A++S   +H
Sbjct: 609 GLFFS-LKYRNLDTWNAMISAYAMH 632



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 147/312 (47%), Gaps = 37/312 (11%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ L+  Y K  ++  ++ LFD++  K+VVS++ +I+GY  N    ++    ++MM  G+
Sbjct: 389 TTALIEVYTKCTRVMRSKYLFDQLIIKDVVSYNAMIYGYLQNDMANEATSLLNYMMAEGV 448

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
            P+  T++ +L A A  ++L   R IHG  ++ G  SD                      
Sbjct: 449 APDFATVLSLLAAFADQRDLVRGRWIHGFAIRHGFCSDVDVENQILYMYSACGKIAAARA 508

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F+ L+   LVS  A++ G ++N    + V LF   +  G  P++V+++T ++    LG 
Sbjct: 509 IFDSLEKKNLVSWTAMMKGCLSNGHADEVVQLFQVMQKYGEKPDSVSLVTAVQAVSDLGH 568

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
               + IH    +  L  D    NS++  Y+    LD +  +F  ++ +++ +W  M+  
Sbjct: 569 LNGLKQIHCFVYRSLLEKDKITANSLISAYAKCGKLDLSAGLFFSLKYRNLDTWNAMISA 628

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +    +  + L++F++M +  I  D +    +++  +  G +K G               
Sbjct: 629 YAMHGFHINVLEMFKQMEEENIQPDELTFSTVLTACSHAGLVKDG--------------- 673

Query: 286 LRLSNSIIAMYS 297
            R+ NS+ ++YS
Sbjct: 674 WRIFNSMTSVYS 685



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 81/185 (43%), Gaps = 22/185 (11%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C D    +++L  Y   GKI  A  +FD + +KN+VSW+ ++ G   NG  ++ ++ F  
Sbjct: 484 CSDVDVENQILYMYSACGKIAAARAIFDSLEKKNLVSWTAMMKGCLSNGHADEVVQLFQV 543

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------- 105
           M   G  P+S ++V  + A + L +L   + IH  + +  LE D                
Sbjct: 544 MQKYGEKPDSVSLVTAVQAVSDLGHLNGLKQIHCFVYRSLLEKDKITANSLISAYAKCGK 603

Query: 106 ------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                 LF  LK   L + NA+++ +  +      + +F       + P+ +T  TV+  
Sbjct: 604 LDLSAGLFFSLKYRNLDTWNAMISAYAMHGFHINVLEMFKQMEEENIQPDELTFSTVLTA 663

Query: 160 CVALG 164
           C   G
Sbjct: 664 CSHAG 668


>gi|147765322|emb|CAN64903.1| hypothetical protein VITISV_019802 [Vitis vinifera]
          Length = 625

 Score =  247 bits (630), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 149/490 (30%), Positives = 265/490 (54%), Gaps = 21/490 (4%)

Query: 55  SMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPY 114
           + ++ S ++  GL  NSF    ++ A A  Q+   +R +             F+ L++  
Sbjct: 42  TRQSHSRILSLGLSQNSFLATKLIFAYAICQHPYHSRLV-------------FDSLQHKN 88

Query: 115 LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHG 174
           +   N+++ G + N+L+ +A  LFN    S ++P+  T+ T+ +    LG+    + IHG
Sbjct: 89  VFLWNSLINGCVKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHG 148

Query: 175 LTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV---DFEY 231
            +I+ G + D  V NS++ MY    + D + ++F EM  ++  SW  ++  +    +  +
Sbjct: 149 KSIRTGFVSDTVVANSIMSMYCKCGNFDESRKVFDEMTIRNSGSWNVLIAGYAVSGNCNF 208

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISV-NAILGDLKRGKQLHAQVVLG----GLQSEL 286
             +  +  ++M+   +  D   + +L+ + +  +G    G++LH  +V      GL S++
Sbjct: 209 REETWEFVKQMQMDEVRPDAYTISSLLPLCDGDMGKWDYGRELHCYIVKNELVLGLDSDV 268

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            L   +I MYS+   +   R VF+++  +++ SWTA+I+GYV+NG + EAL+ F  M+  
Sbjct: 269 HLGCCLIDMYSRSNKVVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVI 328

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
                + ++LVS+L A    + L    Q+HG A         S+ N LI  YSKCG++D 
Sbjct: 329 DGVEPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDS 388

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           A  VFE+    +D +SW+++I GYG++G G+ A+ LY KM + G  PD  T + IL+ACG
Sbjct: 389 ARRVFEDDSLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSACG 448

Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIW 526
            +GL N+GL I++ +I +  ++P+ E   C+VD+L RAG L  A      +    GP++W
Sbjct: 449 RSGLVNEGLNIYSSVINDYGIEPTLEICACIVDMLGRAGQLDRALDFIKAIPVEPGPSVW 508

Query: 527 RALLSGCVLH 536
            AL+S  ++H
Sbjct: 509 GALVSCSIIH 518



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 125/489 (25%), Positives = 228/489 (46%), Gaps = 35/489 (7%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++KL+  Y        +  +FD +  KNV  W+ +I+G   N  + ++ + F+ M  S +
Sbjct: 61  ATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLINGCVKNRLYNEAFQLFNQMCSSDV 120

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
           LP+ FT+  +   ++ L  L   +SIHG  ++ G  SD                      
Sbjct: 121 LPDDFTLSTLSKVSSELGALFSGKSIHGKSIRTGFVSDTVVANSIMSMYCKCGNFDESRK 180

Query: 106 LFEGLKNPYLVSCNAIVAGFI---NNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA 162
           +F+ +      S N ++AG+    N    ++        +   + P+A T+ +++  C  
Sbjct: 181 VFDEMTIRNSGSWNVLIAGYAVSGNCNFREETWEFVKQMQMDEVRPDAYTISSLLPLCDG 240

Query: 163 -LGSRALCELIHGLTIK----LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
            +G       +H   +K    LGL  DV +   ++DMYS    +    ++F  M+C++V 
Sbjct: 241 DMGKWDYGRELHCYIVKNELVLGLDSDVHLGCCLIDMYSRSNKVVVGRRVFDRMKCRNVF 300

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRK-SRIICDTVALLNLISVNAILGDLKRGKQLHAQ 276
           SWT M+  +V+   + +AL +FR+M+    +  + V+L++++   +    L  G+Q+H  
Sbjct: 301 SWTAMINGYVENGDSDEALSLFRDMQVIDGVEPNRVSLVSVLPACSSFSGLLSGRQIHGF 360

Query: 277 VVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE-KSLVSWTAIISGYVQNGCARE 335
            V   L +E+ L N++I MYSKCG LDS+R VF   +  K  +SW+++ISGY  +G  +E
Sbjct: 361 AVRKELNNEVSLCNALIDMYSKCGSLDSARRVFEDDSLCKDAISWSSMISGYGLHGKGQE 420

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLH-GIAFEAGFPRYRSVQNCL 394
           A+  + KM Q      D IT V IL+A G    +   L ++  +  + G      +  C+
Sbjct: 421 AILLYDKMLQAGIRP-DMITTVGILSACGRSGLVNEGLNIYSSVINDYGIEPTLEICACI 479

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           +    + G +D A    + +        W  ++    ++G  E     Y  + +  E  +
Sbjct: 480 VDMLGRAGQLDRALDFIKAIPVEPGPSVWGALVSCSIIHGDLEMQELAYRFLIQL-EPKN 538

Query: 455 SSTYLSILN 463
            S Y+SI N
Sbjct: 539 PSNYVSISN 547



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 176/362 (48%), Gaps = 34/362 (9%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSING---FHEKSMKAFS 60
           D   ++ ++S Y K G   E+  +FDE+  +N  SW+++I GY+++G   F E++ +   
Sbjct: 158 DTVVANSIMSMYCKCGNFDESRKVFDEMTIRNSGSWNVLIAGYAVSGNCNFREETWEFVK 217

Query: 61  HMMLSGLLPNSFTMVGVLVAAAG-LQNLELARSIHGLMVK----FGLESD---------- 105
            M +  + P+++T+  +L    G +   +  R +H  +VK     GL+SD          
Sbjct: 218 QMQMDEVRPDAYTISSLLPLCDGDMGKWDYGRELHCYIVKNELVLGLDSDVHLGCCLIDM 277

Query: 106 ------------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRG-SGLVPNAVT 152
                       +F+ +K   + S  A++ G++ N    +A+ LF   +   G+ PN V+
Sbjct: 278 YSRSNKVVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGVEPNRVS 337

Query: 153 MLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME 212
           +++V+  C +         IHG  ++  L  +VS+ N+++DMYS    LD+A ++F +  
Sbjct: 338 LVSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVFEDDS 397

Query: 213 -CKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGK 271
            CKD ISW+ M+  +       +A+ ++ +M ++ I  D +  + ++S     G +  G 
Sbjct: 398 LCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSACGRSGLVNEGL 457

Query: 272 QLHAQVVLG-GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQI-TEKSLVSWTAIISGYVQ 329
            +++ V+   G++  L +   I+ M  + G LD +      I  E     W A++S  + 
Sbjct: 458 NIYSSVINDYGIEPTLEICACIVDMLGRAGQLDRALDFIKAIPVEPGPSVWGALVSCSII 517

Query: 330 NG 331
           +G
Sbjct: 518 HG 519



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 126/261 (48%), Gaps = 9/261 (3%)

Query: 251 TVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFN 310
           ++ALL  +  +     LK  +Q H++++  GL     L+  +I  Y+ C     SR VF+
Sbjct: 23  SLALLQSLHFSVTHKSLKLTRQSHSRILSLGLSQNSFLATKLIFAYAICQHPYHSRLVFD 82

Query: 311 QITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALE 370
            +  K++  W ++I+G V+N    EA   F +M        D  TL ++   S EL AL 
Sbjct: 83  SLQHKNVFLWNSLINGCVKNRLYNEAFQLFNQMCSSDV-LPDDFTLSTLSKVSSELGALF 141

Query: 371 ICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGY 430
               +HG +   GF     V N ++S Y KCGN D +  VF+EM  +R+  SWN +I GY
Sbjct: 142 SGKSIHGKSIRTGFVSDTVVANSIMSMYCKCGNFDESRKVFDEMT-IRNSGSWNVLIAGY 200

Query: 431 GVNGH---GETALALYHKMTETGEVPDSSTYLSILNAC-GHAGLTNDGLVIFNQMIEENK 486
            V+G+    E       +M      PD+ T  S+L  C G  G  + G  +   +++   
Sbjct: 201 AVSGNCNFREETWEFVKQMQMDEVRPDAYTISSLLPLCDGDMGKWDYGRELHCYIVKNEL 260

Query: 487 V--KPSQEHYG-CVVDLLARA 504
           V    S  H G C++D+ +R+
Sbjct: 261 VLGLDSDVHLGCCLIDMYSRS 281


>gi|125544467|gb|EAY90606.1| hypothetical protein OsI_12205 [Oryza sativa Indica Group]
          Length = 818

 Score =  247 bits (630), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 170/601 (28%), Positives = 291/601 (48%), Gaps = 44/601 (7%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D + ++ LL+ Y K G +  A  LFD +PE+N+VS+  ++  ++  G  E +   F  +
Sbjct: 94  LDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRL 153

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY-LVSCN 119
              G   N F +  +L  A  +    LA  +H    K G + + F   GL + Y L S  
Sbjct: 154 RWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLV 213

Query: 120 AIVAGFINNKLFQQAVL---LFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLT 176
           +      N  + + AV+   + + +  +    NA       + C  L      + IHG  
Sbjct: 214 SDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENA---FRCAQSCSLLAISCARQGIHGCA 270

Query: 177 IKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDAL 236
           IK     +  V  ++LDMY+   D+  A   F  +   DVI  + M+  +        A 
Sbjct: 271 IKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAF 330

Query: 237 KIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMY 296
           ++F  + +S ++ +  +L +++     +  L  GKQ+H   +  G +S+L + N+++  Y
Sbjct: 331 ELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFY 390

Query: 297 SKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITL 356
           +KC D+DSS  +F+ + + + VSW  I+ G+ Q+G   EAL+ F +M+  +      +T 
Sbjct: 391 AKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCT-QVTY 449

Query: 357 VSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGF 416
            S+L A    A++    Q+H    ++ F     + N LI +Y+KCG +  A  VF+ +  
Sbjct: 450 SSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHL-M 508

Query: 417 LRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLV 476
            RD++SWN II GY ++G    AL L+ +M ++    +  T++++L+ C   GL N GL 
Sbjct: 509 ERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCCSTGLVNHGLS 568

Query: 477 IFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
           +F+ M  ++ +KPS EHY C+V LL RAG L+DA    G +       +WRALLS C++H
Sbjct: 569 LFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIH 628

Query: 537 ----VGRF----------QDAEA-------------------LRSGSQKKGIIKIPGISF 563
               +GRF          QD                      LR   +  G+ K+PG+S+
Sbjct: 629 KNVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSW 688

Query: 564 L 564
           +
Sbjct: 689 V 689



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 146/341 (42%), Gaps = 34/341 (9%)

Query: 157 IRGCVALGSRALCELIHGLTIKLGLI--LDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
           ++GC+A G       +HG  ++ G +  LD+   N +L+MY  L  L +A ++F  M  +
Sbjct: 66  LQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPER 125

Query: 215 DVISWTRMMGLFV---DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGK 271
           +++S+  ++       DFE A     +FR +R      +   L  ++ +   +       
Sbjct: 126 NMVSFVTLVQAHAQRGDFEAAA---ALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAG 182

Query: 272 QLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNG 331
            +H+     G      + + +I  YS C  +  +  VFN I  K  V WTA++S Y +N 
Sbjct: 183 GVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSEND 242

Query: 332 CAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ 391
           C   A                S +L++I  A            +HG A +        V 
Sbjct: 243 CPENAFR-----------CAQSCSLLAISCARQ---------GIHGCAIKTLNDTEPHVG 282

Query: 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE 451
             L+  Y+KCG++  A + FE + +  DV+  + +I  Y  +   E A  L+ ++  +  
Sbjct: 283 GALLDMYAKCGDIKDARLAFEMIPY-DDVILLSFMISRYAQSNQNEQAFELFLRLMRSSV 341

Query: 452 VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQE 492
           +P+  +  S+L AC     TN   + F + I  + +K   E
Sbjct: 342 LPNEYSLSSVLQAC-----TNMVQLDFGKQIHNHAIKIGHE 377


>gi|125563707|gb|EAZ09087.1| hypothetical protein OsI_31353 [Oryza sativa Indica Group]
          Length = 810

 Score =  247 bits (630), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 175/583 (30%), Positives = 292/583 (50%), Gaps = 39/583 (6%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  D +  + L++ Y K G +  A   F  +P +NVVSW+  I G+  +     +M    
Sbjct: 201 PEYDVFVGTSLVNMYAKCGDMGAAMREFWRMPVRNVVSWTTAIAGFVQDDEPVSAMLLLR 260

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--LFEGLKNPYL--- 115
            M+ +G+  N +T   +L+A A +  +  A  IHG+++K  +  D  + E L + Y    
Sbjct: 261 EMVRNGVAINKYTATSILLACAQMSMVREASQIHGMVLKTEMYLDCVVKEALISTYTNFG 320

Query: 116 --------------VSCNAIVAGFI----NNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
                         VS  +I + FI    N+ L +   LL   F   GL PN     +V 
Sbjct: 321 FIELSEKVFEEAGTVSNRSIWSAFISGVSNHSLLRSVQLLRRMFH-QGLRPNDKCYASVF 379

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
               ++ S      +H   IK G I  + V +++  MYS   ++  + ++F EM+ +D +
Sbjct: 380 S---SVNSIEFGGQLHSSAIKEGFIHGILVGSALSTMYSRCDNVQDSYKVFEEMQERDGV 436

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           SWT M+  F    ++ +A   FR M       D V+L  ++S       L +GK++H   
Sbjct: 437 SWTAMVAGFATHGHSVEAFLTFRNMILDGFKPDHVSLTAILSACNRSECLLKGKEVHGHT 496

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           +    ++   +++  I+MYSKC  + ++R +F+    K  V W+++ISGY  NGC  EA+
Sbjct: 497 LRVYGETTF-INDCFISMYSKCQGVQTARRIFDATPCKDQVMWSSMISGYATNGCGEEAI 555

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
           + F ++    +  +DS    SIL+   ++A    C  LHG A +AG    +SV + L+  
Sbjct: 556 SLF-QLMVAASIRIDSYICSSILSLCADIARPFYCKPLHGYAIKAGILSDQSVSSSLVKV 614

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           YS+ GN+D +  VF+E+  + D+V+W TII GY  +G  + ALA++  M + G  PD+  
Sbjct: 615 YSRSGNMDDSRKVFDEIS-VPDLVAWTTIIDGYAQHGSSQNALAMFDLMVQLGVRPDTVV 673

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL 517
            +S+L+AC   GL   G   FN M     V+P  +HY C+VDLL R+G L++A      +
Sbjct: 674 LVSVLSACSRNGLVEQGFNYFNSMRTAYGVEPELQHYCCMVDLLGRSGRLAEAKYFVDSM 733

Query: 518 LEGMGPN--IWRALLSGCVLH----VGRFQDAEALRSGSQKKG 554
              M P+  +W  L++ C +H    +GRF + + +R G+   G
Sbjct: 734 --PMKPDLMVWSTLVAACRVHDDTVLGRFVENK-IREGNYDSG 773



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 124/473 (26%), Positives = 214/473 (45%), Gaps = 30/473 (6%)

Query: 17  KSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVG 76
           KSG++++A  +F +    + V W+  + G   NG    +++ F  M+     PNSFT  G
Sbjct: 116 KSGRLRDALRVFADGDPSSAVCWNAAVSGAVRNGEGGLAVEMFRDMVWGSCEPNSFTYSG 175

Query: 77  VLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPY-------------------- 114
            L A A  + L + R++HGL+++   E D+F G  L N Y                    
Sbjct: 176 ALSACAAGEELSVGRAVHGLVLRRDPEYDVFVGTSLVNMYAKCGDMGAAMREFWRMPVRN 235

Query: 115 LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHG 174
           +VS    +AGF+ +     A+LL      +G+  N  T  +++  C  +        IHG
Sbjct: 236 VVSWTTAIAGFVQDDEPVSAMLLLREMVRNGVAINKYTATSILLACAQMSMVREASQIHG 295

Query: 175 LTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS-WTRMMGLFVDFEYAG 233
           + +K  + LD  V  +++  Y+    ++ + ++F E       S W+  +    +     
Sbjct: 296 MVLKTEMYLDCVVKEALISTYTNFGFIELSEKVFEEAGTVSNRSIWSAFISGVSNHSLLR 355

Query: 234 DALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSII 293
               + R   +     D        SVN+I    + G QLH+  +  G    + + +++ 
Sbjct: 356 SVQLLRRMFHQGLRPNDKCYASVFSSVNSI----EFGGQLHSSAIKEGFIHGILVGSALS 411

Query: 294 AMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDS 353
            MYS+C ++  S  VF ++ E+  VSWTA+++G+  +G + EA   F  M  +     D 
Sbjct: 412 TMYSRCDNVQDSYKVFEEMQERDGVSWTAMVAGFATHGHSVEAFLTFRNMILDGFKP-DH 470

Query: 354 ITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEE 413
           ++L +IL+A      L    ++HG      +     + +C IS YSKC  V  A  +F+ 
Sbjct: 471 VSLTAILSACNRSECLLKGKEVHGHTLRV-YGETTFINDCFISMYSKCQGVQTARRIFDA 529

Query: 414 MGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
               +D V W+++I GY  NG GE A++L+  M       DS    SIL+ C 
Sbjct: 530 TP-CKDQVMWSSMISGYATNGCGEEAISLFQLMVAASIRIDSYICSSILSLCA 581



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 133/514 (25%), Positives = 233/514 (45%), Gaps = 60/514 (11%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPE-KNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLP 69
           L+S Y   G I+ +E +F+E     N   WS  I G S N    +S++    M   GL P
Sbjct: 312 LISTYTNFGFIELSEKVFEEAGTVSNRSIWSAFISGVS-NHSLLRSVQLLRRMFHQGLRP 370

Query: 70  NS------FTMVGVLVAAAGLQNLELARS-IHGLMVKFGLES------------DLFEGL 110
           N       F+ V  +     L +  +    IHG++V   L +             +FE +
Sbjct: 371 NDKCYASVFSSVNSIEFGGQLHSSAIKEGFIHGILVGSALSTMYSRCDNVQDSYKVFEEM 430

Query: 111 KNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCE 170
           +    VS  A+VAGF  +    +A L F      G  P+ V++  ++  C    +R+ C 
Sbjct: 431 QERDGVSWTAMVAGFATHGHSVEAFLTFRNMILDGFKPDHVSLTAILSAC----NRSECL 486

Query: 171 L----IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
           L    +HG T+++       +N+  + MYS    +  A +IF    CKD + W+ M+  +
Sbjct: 487 LKGKEVHGHTLRV-YGETTFINDCFISMYSKCQGVQTARRIFDATPCKDQVMWSSMISGY 545

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
                  +A+ +F+ M  + I  D+    +++S+ A +      K LH   +  G+ S+ 
Sbjct: 546 ATNGCGEEAISLFQLMVAASIRIDSYICSSILSLCADIARPFYCKPLHGYAIKAGILSDQ 605

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            +S+S++ +YS+ G++D SR VF++I+   LV+WT II GY Q+G ++ AL  F  M Q 
Sbjct: 606 SVSSSLVKVYSRSGNMDDSRKVFDEISVPDLVAWTTIIDGYAQHGSSQNALAMFDLMVQL 665

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN------------CL 394
                D++ LVS+L+A             +G+  E GF  + S++             C+
Sbjct: 666 GVRP-DTVVLVSVLSACSR----------NGLV-EQGFNYFNSMRTAYGVEPELQHYCCM 713

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALY--HKMTETGEV 452
           +    + G +  A    + M    D++ W+T++    V  H +T L  +  +K+ E    
Sbjct: 714 VDLLGRSGRLAEAKYFVDSMPMKPDLMVWSTLVAACRV--HDDTVLGRFVENKIREGNY- 770

Query: 453 PDSSTYLSILNACGHAGLTNDGLVIFNQMIEENK 486
            DS ++ ++ N   ++G   +   I   M   NK
Sbjct: 771 -DSGSFATLSNILANSGDWEEVARIRKTMKGVNK 803



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/356 (26%), Positives = 170/356 (47%), Gaps = 11/356 (3%)

Query: 116 VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGL 175
           V  NA V+G + N     AV +F         PN+ T    +  C A    ++   +HGL
Sbjct: 136 VCWNAAVSGAVRNGEGGLAVEMFRDMVWGSCEPNSFTYSGALSACAAGEELSVGRAVHGL 195

Query: 176 TIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDA 235
            ++     DV V  S+++MY+   D+ AA++ F  M  ++V+SWT  +  FV  +    A
Sbjct: 196 VLRRDPEYDVFVGTSLVNMYAKCGDMGAAMREFWRMPVRNVVSWTTAIAGFVQDDEPVSA 255

Query: 236 LKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAM 295
           + + REM ++ +  +     +++   A +  ++   Q+H  V+   +  +  +  ++I+ 
Sbjct: 256 MLLLREMVRNGVAINKYTATSILLACAQMSMVREASQIHGMVLKTEMYLDCVVKEALIST 315

Query: 296 YSKCGDLDSSRSVFNQ---ITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVD 352
           Y+  G ++ S  VF +   ++ +S+  W+A ISG   +   R    Q ++    +    +
Sbjct: 316 YTNFGFIELSEKVFEEAGTVSNRSI--WSAFISGVSNHSLLRSV--QLLRRMFHQGLRPN 371

Query: 353 SITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFE 412
                S+ ++   + ++E   QLH  A + GF     V + L + YS+C NV  +Y VFE
Sbjct: 372 DKCYASVFSS---VNSIEFGGQLHSSAIKEGFIHGILVGSALSTMYSRCDNVQDSYKVFE 428

Query: 413 EMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
           EM   RD VSW  ++ G+  +GH   A   +  M   G  PD  +  +IL+AC  +
Sbjct: 429 EMQ-ERDGVSWTAMVAGFATHGHSVEAFLTFRNMILDGFKPDHVSLTAILSACNRS 483



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 147/298 (49%), Gaps = 8/298 (2%)

Query: 170 ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDF 229
           E ++    K GL  +  V   ++D+ +    L  A+++F + +    + W   +   V  
Sbjct: 89  EQVYCAAWKDGLSGNAYVCTGMVDLLAKSGRLRDALRVFADGDPSSAVCWNAAVSGAVRN 148

Query: 230 EYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLS 289
              G A+++FR+M       ++      +S  A   +L  G+ +H  V+    + ++ + 
Sbjct: 149 GEGGLAVEMFRDMVWGSCEPNSFTYSGALSACAAGEELSVGRAVHGLVLRRDPEYDVFVG 208

Query: 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD 349
            S++ MY+KCGD+ ++   F ++  +++VSWT  I+G+VQ+    E ++  + +R+   +
Sbjct: 209 TSLVNMYAKCGDMGAAMREFWRMPVRNVVSWTTAIAGFVQDD---EPVSAMLLLREMVRN 265

Query: 350 --SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
             +++  T  SIL A  +++ +    Q+HG+  +        V+  LIS+Y+  G ++L+
Sbjct: 266 GVAINKYTATSILLACAQMSMVREASQIHGMVLKTEMYLDCVVKEALISTYTNFGFIELS 325

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHG-ETALALYHKMTETGEVPDSSTYLSILNA 464
             VFEE G + +   W+  I   GV+ H    ++ L  +M   G  P+   Y S+ ++
Sbjct: 326 EKVFEEAGTVSNRSIWSAFI--SGVSNHSLLRSVQLLRRMFHQGLRPNDKCYASVFSS 381



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 117/276 (42%), Gaps = 23/276 (8%)

Query: 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
           +Q++      GL     +   ++ + +K G L  +  VF      S V W A +SG V+N
Sbjct: 89  EQVYCAAWKDGLSGNAYVCTGMVDLLAKSGRLRDALRVFADGDPSSAVCWNAAVSGAVRN 148

Query: 331 GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS- 389
           G    A+  F  M     +  +S T    L+A      L +   +HG+      P Y   
Sbjct: 149 GEGGLAVEMFRDMVWGSCEP-NSFTYSGALSACAAGEELSVGRAVHGLVLRRD-PEYDVF 206

Query: 390 VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
           V   L++ Y+KCG++  A   F  M  +R+VVSW T I G+  +    +A+ L  +M   
Sbjct: 207 VGTSLVNMYAKCGDMGAAMREFWRMP-VRNVVSWTTAIAGFVQDDEPVSAMLLLREMVRN 265

Query: 450 GEVPDSSTYLSILNACGHAGLTND-----GLVIFNQMIEENKVKPSQEHYGCVVDLLARA 504
           G   +  T  SIL AC    +  +     G+V+  +M  +  VK +      ++      
Sbjct: 266 GVAINKYTATSILLACAQMSMVREASQIHGMVLKTEMYLDCVVKEA------LISTYTNF 319

Query: 505 GCLSDASGLAGKLLEGMGP----NIWRALLSGCVLH 536
           G +     L+ K+ E  G     +IW A +SG   H
Sbjct: 320 GFIE----LSEKVFEEAGTVSNRSIWSAFISGVSNH 351


>gi|46403989|gb|AAS93059.1| pentatricopeptide repeat protein [Oryza sativa Japonica Group]
          Length = 810

 Score =  247 bits (630), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 175/583 (30%), Positives = 292/583 (50%), Gaps = 39/583 (6%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  D +  + L++ Y K G +  A   F  +P +NVVSW+  I G+  +     +M    
Sbjct: 201 PEYDVFVGTSLVNMYAKCGDMGAAMREFWRMPVRNVVSWTTAIAGFVQDDEPVSAMLLLR 260

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--LFEGLKNPYL--- 115
            M+ +G+  N +T   +L+A A +  +  A  IHG+++K  +  D  + E L + Y    
Sbjct: 261 EMVRNGVAINKYTATSILLACAQMSMVREASQIHGMVLKTEMYLDCVVKEALISTYTNFG 320

Query: 116 --------------VSCNAIVAGFI----NNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
                         VS  +I + FI    N+ L +   LL   F   GL PN     +V 
Sbjct: 321 FIELSEKVFEEAGTVSNRSIWSAFISGVSNHSLLRSVQLLRRMFH-QGLRPNDKCYASVF 379

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
               ++ S      +H   IK G I  + V +++  MYS   ++  + ++F EM+ +D +
Sbjct: 380 S---SVNSIEFGGQLHSSAIKEGFIHGILVGSALSTMYSRCDNVQDSYKVFEEMQERDGV 436

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           SWT M+  F    ++ +A   FR M       D V+L  ++S       L +GK++H   
Sbjct: 437 SWTAMVAGFATHGHSVEAFLTFRNMILDGFKPDHVSLTAILSACNRSECLLKGKEVHGHT 496

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           +    ++   +++  I+MYSKC  + ++R +F+    K  V W+++ISGY  NGC  EA+
Sbjct: 497 LRVYGETTF-INDCFISMYSKCQGVQTARRIFDATPCKDQVMWSSMISGYATNGCGEEAI 555

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
           + F ++    +  +DS    SIL+   ++A    C  LHG A +AG    +SV + L+  
Sbjct: 556 SLF-QLMVAASIRIDSYICSSILSLCADIARPFYCKPLHGYAIKAGILSDQSVSSSLVKV 614

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           YS+ GN+D +  VF+E+  + D+V+W TII GY  +G  + ALA++  M + G  PD+  
Sbjct: 615 YSRSGNMDDSRKVFDEIS-VPDLVAWTTIIDGYAQHGSSQNALAMFDLMVQLGVRPDTVV 673

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL 517
            +S+L+AC   GL   G   FN M     V+P  +HY C+VDLL R+G L++A      +
Sbjct: 674 LVSVLSACSRNGLVEQGFNYFNSMRTAYGVEPELQHYCCMVDLLGRSGRLAEAKYFVDSM 733

Query: 518 LEGMGPN--IWRALLSGCVLH----VGRFQDAEALRSGSQKKG 554
              M P+  +W  L++ C +H    +GRF + + +R G+   G
Sbjct: 734 --PMKPDLMVWSTLVAACRVHDDTVLGRFVENK-IREGNYDSG 773



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 124/473 (26%), Positives = 214/473 (45%), Gaps = 30/473 (6%)

Query: 17  KSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVG 76
           KSG++++A  +F +    + V W+  + G   NG    +++ F  M+     PNSFT  G
Sbjct: 116 KSGRLRDALRVFADGDPSSAVCWNAAVSGAVRNGEGGLAVEMFRDMVWGSCEPNSFTYSG 175

Query: 77  VLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPY-------------------- 114
            L A A  + L + R++HGL+++   E D+F G  L N Y                    
Sbjct: 176 ALSACAAGEELSVGRAVHGLVLRRDPEYDVFVGTSLVNMYAKCGDMGAAMREFWRMPVRN 235

Query: 115 LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHG 174
           +VS    +AGF+ +     A+LL      +G+  N  T  +++  C  +        IHG
Sbjct: 236 VVSWTTAIAGFVQDDEPVSAMLLLREMVRNGVAINKYTATSILLACAQMSMVREASQIHG 295

Query: 175 LTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS-WTRMMGLFVDFEYAG 233
           + +K  + LD  V  +++  Y+    ++ + ++F E       S W+  +    +     
Sbjct: 296 MVLKTEMYLDCVVKEALISTYTNFGFIELSEKVFEEAGTVSNRSIWSAFISGVSNHSLLR 355

Query: 234 DALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSII 293
               + R   +     D        SVN+I    + G QLH+  +  G    + + +++ 
Sbjct: 356 SVQLLRRMFHQGLRPNDKCYASVFSSVNSI----EFGGQLHSSAIKEGFIHGILVGSALS 411

Query: 294 AMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDS 353
            MYS+C ++  S  VF ++ E+  VSWTA+++G+  +G + EA   F  M  +     D 
Sbjct: 412 TMYSRCDNVQDSYKVFEEMQERDGVSWTAMVAGFATHGHSVEAFLTFRNMILDGFKP-DH 470

Query: 354 ITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEE 413
           ++L +IL+A      L    ++HG      +     + +C IS YSKC  V  A  +F+ 
Sbjct: 471 VSLTAILSACNRSECLLKGKEVHGHTLRV-YGETTFINDCFISMYSKCQGVQTARRIFDA 529

Query: 414 MGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
               +D V W+++I GY  NG GE A++L+  M       DS    SIL+ C 
Sbjct: 530 TP-CKDQVMWSSMISGYATNGCGEEAISLFQLMVAASIRIDSYICSSILSLCA 581



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 133/514 (25%), Positives = 233/514 (45%), Gaps = 60/514 (11%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPE-KNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLP 69
           L+S Y   G I+ +E +F+E     N   WS  I G S N    +S++    M   GL P
Sbjct: 312 LISTYTNFGFIELSEKVFEEAGTVSNRSIWSAFISGVS-NHSLLRSVQLLRRMFHQGLRP 370

Query: 70  NS------FTMVGVLVAAAGLQNLELARS-IHGLMVKFGLES------------DLFEGL 110
           N       F+ V  +     L +  +    IHG++V   L +             +FE +
Sbjct: 371 NDKCYASVFSSVNSIEFGGQLHSSAIKEGFIHGILVGSALSTMYSRCDNVQDSYKVFEEM 430

Query: 111 KNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCE 170
           +    VS  A+VAGF  +    +A L F      G  P+ V++  ++  C    +R+ C 
Sbjct: 431 QERDGVSWTAMVAGFATHGHSVEAFLTFRNMILDGFKPDHVSLTAILSAC----NRSECL 486

Query: 171 L----IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
           L    +HG T+++       +N+  + MYS    +  A +IF    CKD + W+ M+  +
Sbjct: 487 LKGKEVHGHTLRV-YGETTFINDCFISMYSKCQGVQTARRIFDATPCKDQVMWSSMISGY 545

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
                  +A+ +F+ M  + I  D+    +++S+ A +      K LH   +  G+ S+ 
Sbjct: 546 ATNGCGEEAISLFQLMVAASIRIDSYICSSILSLCADIARPFYCKPLHGYAIKAGILSDQ 605

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            +S+S++ +YS+ G++D SR VF++I+   LV+WT II GY Q+G ++ AL  F  M Q 
Sbjct: 606 SVSSSLVKVYSRSGNMDDSRKVFDEISVPDLVAWTTIIDGYAQHGSSQNALAMFDLMVQL 665

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN------------CL 394
                D++ LVS+L+A             +G+  E GF  + S++             C+
Sbjct: 666 GVRP-DTVVLVSVLSACSR----------NGLV-EQGFNYFNSMRTAYGVEPELQHYCCM 713

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALY--HKMTETGEV 452
           +    + G +  A    + M    D++ W+T++    V  H +T L  +  +K+ E    
Sbjct: 714 VDLLGRSGRLAEAKYFVDSMPMKPDLMVWSTLVAACRV--HDDTVLGRFVENKIREGNY- 770

Query: 453 PDSSTYLSILNACGHAGLTNDGLVIFNQMIEENK 486
            DS ++ ++ N   ++G   +   I   M   NK
Sbjct: 771 -DSGSFATLSNILANSGDWEEVARIRKTMKGVNK 803



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/356 (26%), Positives = 170/356 (47%), Gaps = 11/356 (3%)

Query: 116 VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGL 175
           V  NA V+G + N     AV +F         PN+ T    +  C A    ++   +HGL
Sbjct: 136 VCWNAAVSGAVRNGEGGLAVEMFRDMVWGSCEPNSFTYSGALSACAAGEELSVGRAVHGL 195

Query: 176 TIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDA 235
            ++     DV V  S+++MY+   D+ AA++ F  M  ++V+SWT  +  FV  +    A
Sbjct: 196 VLRRDPEYDVFVGTSLVNMYAKCGDMGAAMREFWRMPVRNVVSWTTAIAGFVQDDEPVSA 255

Query: 236 LKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAM 295
           + + REM ++ +  +     +++   A +  ++   Q+H  V+   +  +  +  ++I+ 
Sbjct: 256 MLLLREMVRNGVAINKYTATSILLACAQMSMVREASQIHGMVLKTEMYLDCVVKEALIST 315

Query: 296 YSKCGDLDSSRSVFNQ---ITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVD 352
           Y+  G ++ S  VF +   ++ +S+  W+A ISG   +   R    Q ++    +    +
Sbjct: 316 YTNFGFIELSEKVFEEAGTVSNRSI--WSAFISGVSNHSLLRSV--QLLRRMFHQGLRPN 371

Query: 353 SITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFE 412
                S+ ++   + ++E   QLH  A + GF     V + L + YS+C NV  +Y VFE
Sbjct: 372 DKCYASVFSS---VNSIEFGGQLHSSAIKEGFIHGILVGSALSTMYSRCDNVQDSYKVFE 428

Query: 413 EMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
           EM   RD VSW  ++ G+  +GH   A   +  M   G  PD  +  +IL+AC  +
Sbjct: 429 EMQ-ERDGVSWTAMVAGFATHGHSVEAFLTFRNMILDGFKPDHVSLTAILSACNRS 483



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 147/298 (49%), Gaps = 8/298 (2%)

Query: 170 ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDF 229
           E ++    K GL  +  V   ++D+ +    L  A+++F + +    + W   +   V  
Sbjct: 89  EQVYCAAWKDGLSGNAYVCTGMVDLLAKSGRLRDALRVFADGDPSSAVCWNAAVSGAVRN 148

Query: 230 EYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLS 289
              G A+++FR+M       ++      +S  A   +L  G+ +H  V+    + ++ + 
Sbjct: 149 GEGGLAVEMFRDMVWGSCEPNSFTYSGALSACAAGEELSVGRAVHGLVLRRDPEYDVFVG 208

Query: 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD 349
            S++ MY+KCGD+ ++   F ++  +++VSWT  I+G+VQ+    E ++  + +R+   +
Sbjct: 209 TSLVNMYAKCGDMGAAMREFWRMPVRNVVSWTTAIAGFVQDD---EPVSAMLLLREMVRN 265

Query: 350 --SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
             +++  T  SIL A  +++ +    Q+HG+  +        V+  LIS+Y+  G ++L+
Sbjct: 266 GVAINKYTATSILLACAQMSMVREASQIHGMVLKTEMYLDCVVKEALISTYTNFGFIELS 325

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHG-ETALALYHKMTETGEVPDSSTYLSILNA 464
             VFEE G + +   W+  I   GV+ H    ++ L  +M   G  P+   Y S+ ++
Sbjct: 326 EKVFEEAGTVSNRSIWSAFI--SGVSNHSLLRSVQLLRRMFHQGLRPNDKCYASVFSS 381



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 117/276 (42%), Gaps = 23/276 (8%)

Query: 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
           +Q++      GL     +   ++ + +K G L  +  VF      S V W A +SG V+N
Sbjct: 89  EQVYCAAWKDGLSGNAYVCTGMVDLLAKSGRLRDALRVFADGDPSSAVCWNAAVSGAVRN 148

Query: 331 GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS- 389
           G    A+  F  M     +  +S T    L+A      L +   +HG+      P Y   
Sbjct: 149 GEGGLAVEMFRDMVWGSCEP-NSFTYSGALSACAAGEELSVGRAVHGLVLRRD-PEYDVF 206

Query: 390 VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
           V   L++ Y+KCG++  A   F  M  +R+VVSW T I G+  +    +A+ L  +M   
Sbjct: 207 VGTSLVNMYAKCGDMGAAMREFWRMP-VRNVVSWTTAIAGFVQDDEPVSAMLLLREMVRN 265

Query: 450 GEVPDSSTYLSILNACGHAGLTND-----GLVIFNQMIEENKVKPSQEHYGCVVDLLARA 504
           G   +  T  SIL AC    +  +     G+V+  +M  +  VK +      ++      
Sbjct: 266 GVAINKYTATSILLACAQMSMVREASQIHGMVLKTEMYLDCVVKEA------LISTYTNF 319

Query: 505 GCLSDASGLAGKLLEGMGP----NIWRALLSGCVLH 536
           G +     L+ K+ E  G     +IW A +SG   H
Sbjct: 320 GFIE----LSEKVFEEAGTVSNRSIWSAFISGVSNH 351


>gi|255553021|ref|XP_002517553.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543185|gb|EEF44717.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 653

 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 154/503 (30%), Positives = 260/503 (51%), Gaps = 37/503 (7%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           LLS Y +   +  A N+F  + E+N+ SW++++ GY+  GF ++++  +  M+  G+ P+
Sbjct: 143 LLSMYVRFSDLNNAWNVFGRMGERNLFSWNVLVGGYAKAGFFDEALCLYHRMLWVGIKPD 202

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------------FE 108
            +T   VL +  G  +    + IH  +++FG E+D+                      F+
Sbjct: 203 IYTFPCVLRSCGGANDFIRGKEIHCHVIRFGFETDVSAVNALITMYVKCGCVGSARTVFD 262

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            +     +S NA+++G+  N    + + LF       + P+ +TM +VI  C  LG   L
Sbjct: 263 KMLQRDRISWNAMISGYFENGECVEGLNLFLQMLELSVDPDLMTMTSVISACELLGDDRL 322

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
              IHG  ++ G   DVSV++ ++ MY+ L     A ++F E EC+DV+SWT M+  +  
Sbjct: 323 GREIHGYVVRTGYGNDVSVHSLLIQMYASLGYWKEAEKVFSETECRDVVSWTAMISGYEG 382

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
                 AL+ ++ M  + I+ D + +  ++S  A LG L  G +LH      GL S + +
Sbjct: 383 NLMHDKALETYKNMELAGIVPDEITIACVLSACASLGQLDLGMRLHELANRMGLMSFVIV 442

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
           +NS+I MYSKC  +D +  VF+ I +K+++SWT+II G   N  + EAL+ F KM++   
Sbjct: 443 ANSLIDMYSKCKCIDKALEVFHCIQDKNVISWTSIILGLRINNRSFEALSFFRKMKRNLK 502

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
              +SITL+S+L+A   + AL    ++H  A +        + N ++  Y +CG + LA 
Sbjct: 503 P--NSITLISVLSACARIGALMCGKEIHAHALKTAMVYEGFLPNAILDMYVRCGKLGLAL 560

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
             F    +  DV +WN ++ GY   G G  A+ L+HKM E+   PD  TY+++L AC  +
Sbjct: 561 NQFNL--YKEDVAAWNILMRGYAEQGQGAMAVELFHKMIESKVNPDDVTYIALLCACSRS 618

Query: 469 GLTNDGLVIFNQMIEENKVKPSQ 491
           G           M+EE K  P +
Sbjct: 619 G-----------MVEEAKWTPKK 630



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 96/305 (31%), Positives = 157/305 (51%), Gaps = 10/305 (3%)

Query: 171 LIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFE 230
           L++ L+++LG        N++L MY    DL+ A  +F  M  +++ SW  ++G +    
Sbjct: 131 LVNPLSVRLG--------NALLSMYVRFSDLNNAWNVFGRMGERNLFSWNVLVGGYAKAG 182

Query: 231 YAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSN 290
           +  +AL ++  M    I  D      ++       D  RGK++H  V+  G ++++   N
Sbjct: 183 FFDEALCLYHRMLWVGIKPDIYTFPCVLRSCGGANDFIRGKEIHCHVIRFGFETDVSAVN 242

Query: 291 SIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDS 350
           ++I MY KCG + S+R+VF+++ ++  +SW A+ISGY +NG   E LN F++M +   D 
Sbjct: 243 ALITMYVKCGCVGSARTVFDKMLQRDRISWNAMISGYFENGECVEGLNLFLQMLELSVDP 302

Query: 351 VDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIV 410
            D +T+ S+++A   L    +  ++HG     G+    SV + LI  Y+  G    A  V
Sbjct: 303 -DLMTMTSVISACELLGDDRLGREIHGYVVRTGYGNDVSVHSLLIQMYASLGYWKEAEKV 361

Query: 411 FEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGL 470
           F E    RDVVSW  +I GY  N   + AL  Y  M   G VPD  T   +L+AC   G 
Sbjct: 362 FSETE-CRDVVSWTAMISGYEGNLMHDKALETYKNMELAGIVPDEITIACVLSACASLGQ 420

Query: 471 TNDGL 475
            + G+
Sbjct: 421 LDLGM 425



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 148/294 (50%), Gaps = 30/294 (10%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           S L+  Y   G  KEAE +F E   ++VVSW+ +I GY  N  H+K+++ + +M L+G++
Sbjct: 343 SLLIQMYASLGYWKEAEKVFSETECRDVVSWTAMISGYEGNLMHDKALETYKNMELAGIV 402

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES----------------------DL 106
           P+  T+  VL A A L  L+L   +H L  + GL S                      ++
Sbjct: 403 PDEITIACVLSACASLGQLDLGMRLHELANRMGLMSFVIVANSLIDMYSKCKCIDKALEV 462

Query: 107 FEGLKNPYLVSCNAIVAGF-INNKLFQQAVLLFNFFR--GSGLVPNAVTMLTVIRGCVAL 163
           F  +++  ++S  +I+ G  INN+ F+      +FFR     L PN++T+++V+  C  +
Sbjct: 463 FHCIQDKNVISWTSIILGLRINNRSFEA----LSFFRKMKRNLKPNSITLISVLSACARI 518

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
           G+    + IH   +K  ++ +  + N++LDMY     L  A+  F   + +DV +W  +M
Sbjct: 519 GALMCGKEIHAHALKTAMVYEGFLPNAILDMYVRCGKLGLALNQFNLYK-EDVAAWNILM 577

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
             + +      A+++F +M +S++  D V  + L+   +  G ++  K    +V
Sbjct: 578 RGYAEQGQGAMAVELFHKMIESKVNPDDVTYIALLCACSRSGMVEEAKWTPKKV 631



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 114/236 (48%), Gaps = 11/236 (4%)

Query: 235 ALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS-----ELRLS 289
           A+K    M++ +I+ +    + LI     L + KRG      V    L S      +RL 
Sbjct: 85  AIKHLNSMQELKILVEDETFIALIR----LCENKRGYTEGDYVFKAVLNSLVNPLSVRLG 140

Query: 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD 349
           N++++MY +  DL+++ +VF ++ E++L SW  ++ GY + G   EAL  + +M      
Sbjct: 141 NALLSMYVRFSDLNNAWNVFGRMGERNLFSWNVLVGGYAKAGFFDEALCLYHRMLWVGIK 200

Query: 350 SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYI 409
             D  T   +L + G         ++H      GF    S  N LI+ Y KCG V  A  
Sbjct: 201 P-DIYTFPCVLRSCGGANDFIRGKEIHCHVIRFGFETDVSAVNALITMYVKCGCVGSART 259

Query: 410 VFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
           VF++M   RD +SWN +I GY  NG     L L+ +M E    PD  T  S+++AC
Sbjct: 260 VFDKM-LQRDRISWNAMISGYFENGECVEGLNLFLQMLELSVDPDLMTMTSVISAC 314



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 80/181 (44%), Gaps = 28/181 (15%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ L+  Y K   I +A  +F  I +KNV+SW+ +I G  IN    +++ +F   M   L
Sbjct: 443 ANSLIDMYSKCKCIDKALEVFHCIQDKNVISWTSIILGLRINNRSFEAL-SFFRKMKRNL 501

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG-LKNPYL---VSC----- 118
            PNS T++ VL A A +  L   + IH   +K  +   ++EG L N  L   V C     
Sbjct: 502 KPNSITLISVLSACARIGALMCGKEIHAHALKTAM---VYEGFLPNAILDMYVRCGKLGL 558

Query: 119 ---------------NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
                          N ++ G+        AV LF+    S + P+ VT + ++  C   
Sbjct: 559 ALNQFNLYKEDVAAWNILMRGYAEQGQGAMAVELFHKMIESKVNPDDVTYIALLCACSRS 618

Query: 164 G 164
           G
Sbjct: 619 G 619


>gi|357135382|ref|XP_003569289.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Brachypodium distachyon]
          Length = 1054

 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 169/561 (30%), Positives = 286/561 (50%), Gaps = 37/561 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  S L+S + + G + EA+++F  + E+N V+ + +I G       E+++  F    
Sbjct: 304 DLYVGSALVSAFARHGMLDEAKDIFINLKERNAVTLNGLIVGLVKQHCSEEAVGIFMGTR 363

Query: 64  LSGLLPNSFTMVGVLVAAAGL----QNLELARSIHGLMVKFGL---ESDLFEGLKNPYL- 115
            S ++ N+ T V +L A A        L   R +HG +++ GL   +  L  GL N Y  
Sbjct: 364 DSFVV-NTDTFVVLLSAVAEFSIPEDGLMRGREVHGHILRTGLIDLKIALSNGLVNMYAK 422

Query: 116 -------------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTV 156
                              VS N I++    N   + A++ +   R   + P+    ++ 
Sbjct: 423 CGAIDKASRVFRLLCARDRVSWNTIISVLDQNGFCEGAMMNYCMMRQGCISPSNFAAISG 482

Query: 157 IRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
           +  C +L      + +H   +K GL LD SV+N+++ MY        + +IF  M   D+
Sbjct: 483 LSSCASLRLLTAGQQVHCDAVKWGLDLDTSVSNALVKMYGDCGARSESWEIFNSMAEHDI 542

Query: 217 ISWTRMMGLFVD-FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
           +SW  +MG+ V       +++++F  M +S +  + V  +NL+S  + L  L+ GKQ+HA
Sbjct: 543 VSWNSIMGVMVSSHAPTAESVEVFSNMMRSGLTPNKVTFVNLLSALSPLSVLELGKQVHA 602

Query: 276 QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISGYVQNGCAR 334
            V+  G   +  + N++++ Y+K GD+DS   +F+ ++  +  VSW ++ISGY+ NG  +
Sbjct: 603 VVLKHGAIEDNAVDNALMSCYAKSGDMDSCEQLFSSMSGRRDAVSWNSMISGYIYNGHLQ 662

Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
           E ++  + +       +D  T   +L A   +AALE  +++H     +       V++ L
Sbjct: 663 ETMD-CVWLMMHSNQMLDCCTFSIVLNACASVAALERGMEMHAFGIRSQLESDVVVESAL 721

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           +  YSKCG +D A  VF  M   ++  SWN++I GY  +G GE AL ++ +M   G  PD
Sbjct: 722 LDMYSKCGRIDYASKVFNSMS-QKNEFSWNSMISGYARHGLGEKALEIFEEMQRNGACPD 780

Query: 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLA 514
             T++S+L+AC HAGL + GL  F +M+E++ + P  EHY CV+DLL RAG L       
Sbjct: 781 HVTFVSVLSACSHAGLVDRGLDYF-EMMEDHGILPHIEHYSCVIDLLGRAGKLLKIQEYI 839

Query: 515 GKLLEGMGPN--IWRALLSGC 533
            ++   M PN  IWR +L  C
Sbjct: 840 NRM--PMKPNTLIWRTVLVAC 858



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 140/558 (25%), Positives = 259/558 (46%), Gaps = 59/558 (10%)

Query: 23  EAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSG----LLPNSFTMVGVL 78
           +A+ +FD  P +++++W+ ++  Y+  G+   +   F  M+       L PN  T  G L
Sbjct: 217 QAQQVFDTTPVRDLITWNALMSVYAKKGYVVSTFTLFMAMLHDDSAIELRPNEHTF-GSL 275

Query: 79  VAAAGLQNLE--LARSIHGLMVKFGLESDLFEG----------------------LKNPY 114
           + A  L +    +   +   ++K G  SDL+ G                      LK   
Sbjct: 276 ITATSLSSCSSGVLDQVFARVLKSGSSSDLYVGSALVSAFARHGMLDEAKDIFINLKERN 335

Query: 115 LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCE---- 170
            V+ N ++ G +     ++AV +F   R S +V N  T + ++    A+   ++ E    
Sbjct: 336 AVTLNGLIVGLVKQHCSEEAVGIFMGTRDSFVV-NTDTFVVLLS---AVAEFSIPEDGLM 391

Query: 171 ---LIHGLTIKLGLI-LDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
               +HG  ++ GLI L ++++N +++MY+    +D A ++FR +  +D +SW  ++ + 
Sbjct: 392 RGREVHGHILRTGLIDLKIALSNGLVNMYAKCGAIDKASRVFRLLCARDRVSWNTIISVL 451

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
               +   A+  +  MR+  I     A ++ +S  A L  L  G+Q+H   V  GL  + 
Sbjct: 452 DQNGFCEGAMMNYCMMRQGCISPSNFAAISGLSSCASLRLLTAGQQVHCDAVKWGLDLDT 511

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQ-NGCAREALNQFIKMRQ 345
            +SN+++ MY  CG    S  +FN + E  +VSW +I+   V  +    E++  F  M +
Sbjct: 512 SVSNALVKMYGDCGARSESWEIFNSMAEHDIVSWNSIMGVMVSSHAPTAESVEVFSNMMR 571

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
               + + +T V++L+A   L+ LE+  Q+H +  + G     +V N L+S Y+K G++D
Sbjct: 572 SGL-TPNKVTFVNLLSALSPLSVLELGKQVHAVVLKHGAIEDNAVDNALMSCYAKSGDMD 630

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
               +F  M   RD VSWN++I GY  NGH +  +     M  + ++ D  T+  +LNAC
Sbjct: 631 SCEQLFSSMSGRRDAVSWNSMISGYIYNGHLQETMDCVWLMMHSNQMLDCCTFSIVLNAC 690

Query: 466 GHAGLTNDGLVI----FNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
                   G+ +        +E + V  S      ++D+ ++ G +  AS    K+   M
Sbjct: 691 ASVAALERGMEMHAFGIRSQLESDVVVES-----ALLDMYSKCGRIDYAS----KVFNSM 741

Query: 522 GPN---IWRALLSGCVLH 536
                  W +++SG   H
Sbjct: 742 SQKNEFSWNSMISGYARH 759



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 148/584 (25%), Positives = 265/584 (45%), Gaps = 55/584 (9%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + S+ L++ Y K  ++  A  +FD + E+N VSW+ ++ GY ++G  +++ + F  M+
Sbjct: 90  DLFLSNHLVNLYAKGSRLAAARQVFDGMLERNAVSWTCLVSGYVLSGITDEAFRVFKAML 149

Query: 64  LSG---LLPNSFTMVGVLVAA--AGLQNLELARSIHGLMVK------------------- 99
             G     P  FT   VL A   AG   L  A  +HGL+ K                   
Sbjct: 150 WEGSEFSRPTPFTFGSVLRACQDAGPDLLAFAVQVHGLVSKTIYASNTTVCNALISMYGN 209

Query: 100 --FGLE---SDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSG----LVPNA 150
              GL      +F+      L++ NA+++ +           LF           L PN 
Sbjct: 210 CSVGLPLQAQQVFDTTPVRDLITWNALMSVYAKKGYVVSTFTLFMAMLHDDSAIELRPNE 269

Query: 151 VTMLTVIRGC-VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFR 209
            T  ++I    ++  S  + + +    +K G   D+ V ++++  ++    LD A  IF 
Sbjct: 270 HTFGSLITATSLSSCSSGVLDQVFARVLKSGSSSDLYVGSALVSAFARHGMLDEAKDIFI 329

Query: 210 EMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRII-CDT-VALLNLISVNAILGD- 266
            ++ ++ ++   ++   V    + +A+ IF   R S ++  DT V LL+ ++  +I  D 
Sbjct: 330 NLKERNAVTLNGLIVGLVKQHCSEEAVGIFMGTRDSFVVNTDTFVVLLSAVAEFSIPEDG 389

Query: 267 LKRGKQLHAQVVLGGL-QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIIS 325
           L RG+++H  ++  GL   ++ LSN ++ MY+KCG +D +  VF  +  +  VSW  IIS
Sbjct: 390 LMRGREVHGHILRTGLIDLKIALSNGLVNMYAKCGAIDKASRVFRLLCARDRVSWNTIIS 449

Query: 326 GYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFP 385
              QNG    A+  +  MRQ    S  +   +S L++   L  L    Q+H  A + G  
Sbjct: 450 VLDQNGFCEGAMMNYCMMRQ-GCISPSNFAAISGLSSCASLRLLTAGQQVHCDAVKWGLD 508

Query: 386 RYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETA--LALY 443
              SV N L+  Y  CG    ++ +F  M    D+VSWN+I+ G  V+ H  TA  + ++
Sbjct: 509 LDTSVSNALVKMYGDCGARSESWEIFNSMA-EHDIVSWNSIM-GVMVSSHAPTAESVEVF 566

Query: 444 HKMTETGEVPDSSTYLSILNACG-----HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVV 498
             M  +G  P+  T++++L+A         G     +V+ +  IE+N V         ++
Sbjct: 567 SNMMRSGLTPNKVTFVNLLSALSPLSVLELGKQVHAVVLKHGAIEDNAVD------NALM 620

Query: 499 DLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQD 542
              A++G +     L   +        W +++SG + + G  Q+
Sbjct: 621 SCYAKSGDMDSCEQLFSSMSGRRDAVSWNSMISGYIYN-GHLQE 663



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 105/210 (50%), Gaps = 11/210 (5%)

Query: 265 GDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAII 324
           G+    ++LH ++V  GL  +L LSN ++ +Y+K   L ++R VF+ + E++ VSWT ++
Sbjct: 70  GEEAAPERLHLELVKRGLTHDLFLSNHLVNLYAKGSRLAAARQVFDGMLERNAVSWTCLV 129

Query: 325 SGYVQNGCAREALNQFIKMRQEKTD--SVDSITLVSILTASGELAA--LEICLQLHGIAF 380
           SGYV +G   EA   F  M  E ++       T  S+L A  +     L   +Q+HG+  
Sbjct: 130 SGYVLSGITDEAFRVFKAMLWEGSEFSRPTPFTFGSVLRACQDAGPDLLAFAVQVHGLVS 189

Query: 381 EAGFPRYRSVQNCLISSYSKC--GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGET 438
           +  +    +V N LIS Y  C  G    A  VF+    +RD+++WN ++  Y   G+  +
Sbjct: 190 KTIYASNTTVCNALISMYGNCSVGLPLQAQQVFDTTP-VRDLITWNALMSVYAKKGYVVS 248

Query: 439 ALALYHKMTETGEV----PDSSTYLSILNA 464
              L+  M          P+  T+ S++ A
Sbjct: 249 TFTLFMAMLHDDSAIELRPNEHTFGSLITA 278



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 77/324 (23%), Positives = 148/324 (45%), Gaps = 13/324 (4%)

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
           G  A  E +H   +K GL  D+ ++N ++++Y+    L AA Q+F  M  ++ +SWT ++
Sbjct: 70  GEEAAPERLHLELVKRGLTHDLFLSNHLVNLYAKGSRLAAARQVFDGMLERNAVSWTCLV 129

Query: 224 GLFVDFEYAGDALKIFREM-----RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
             +V      +A ++F+ M       SR    T   +     +A    L    Q+H  V 
Sbjct: 130 SGYVLSGITDEAFRVFKAMLWEGSEFSRPTPFTFGSVLRACQDAGPDLLAFAVQVHGLVS 189

Query: 279 LGGLQSELRLSNSIIAMYSKC--GDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
                S   + N++I+MY  C  G    ++ VF+    + L++W A++S Y + G     
Sbjct: 190 KTIYASNTTVCNALISMYGNCSVGLPLQAQQVFDTTPVRDLITWNALMSVYAKKGYVVST 249

Query: 337 LNQFIKMRQEKTD---SVDSITLVSILTASGELAALEICL-QLHGIAFEAGFPRYRSVQN 392
              F+ M  + +      +  T  S++TA+   +     L Q+     ++G      V +
Sbjct: 250 FTLFMAMLHDDSAIELRPNEHTFGSLITATSLSSCSSGVLDQVFARVLKSGSSSDLYVGS 309

Query: 393 CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV 452
            L+S++++ G +D A  +F  +   R+ V+ N +I G       E A+ ++   T    V
Sbjct: 310 ALVSAFARHGMLDEAKDIFINLK-ERNAVTLNGLIVGLVKQHCSEEAVGIFMG-TRDSFV 367

Query: 453 PDSSTYLSILNACGHAGLTNDGLV 476
            ++ T++ +L+A     +  DGL+
Sbjct: 368 VNTDTFVVLLSAVAEFSIPEDGLM 391


>gi|242066372|ref|XP_002454475.1| hypothetical protein SORBIDRAFT_04g031840 [Sorghum bicolor]
 gi|241934306|gb|EES07451.1| hypothetical protein SORBIDRAFT_04g031840 [Sorghum bicolor]
          Length = 706

 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 176/621 (28%), Positives = 295/621 (47%), Gaps = 94/621 (15%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSG- 66
           ++ LL  Y + G +  A  L D  P ++  +++ +I  +   G    +++AF  M+  G 
Sbjct: 68  TNSLLHAYLQCGLLSRALRLLDGTPRRDAATYASLISAHCRLGAPLDALRAFLDMLDWGC 127

Query: 67  ----LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFE-------------- 108
               + PN FT   VL A    ++  L R +HG +V  G   D F               
Sbjct: 128 SDAAVRPNEFTAAAVLQACGLARDERLGRMVHGYLVAGGFCGDPFVVGSLVNMYAKAGDV 187

Query: 109 --------GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                   GL    +VS  AI++G + N + ++ + +F      G++PN VTML+VI+ C
Sbjct: 188 VSARRLVLGLPCRDVVSWTAIISGCVLNGMLEEGLEVFVMMLEDGVLPNNVTMLSVIQAC 247

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             +G+  L   +H L + L L  D SV NS++ MY+    ++ AI +FR           
Sbjct: 248 SLMGASELFSPVHALVVLLELEHDASVVNSLIMMYAKNGFVEEAIWLFR----------- 296

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVN-AILGDLKRGKQLHAQVVL 279
              G ++                KS  +C    +L  +     I G +K G  +HA  + 
Sbjct: 297 ---GFYL----------------KSGNVCSNEDVLAAVLYGCTISGSVKNGVGVHAHTIK 337

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G    + + NS++ MY++   +D++  VF  +  K +VSW  IIS   ++    EA+  
Sbjct: 338 IGAFPSISIENSLMGMYARFEQIDAAHFVFEGMKVKDIVSWNTIISCLAKSDRVNEAMEL 397

Query: 340 FIKMRQEKTD-SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
           F  +       + D +T++SIL A      L     LHG   ++GF    S+ N LI+ Y
Sbjct: 398 FSVLHAAAGGLAPDFVTVLSILQACSNAGLLHQGQMLHGYIMKSGFVYDVSICNALITMY 457

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG-EVPDSST 457
           +K G +D A ++FE M  ++D+VSWN++I  YG++G G  AL ++H++ + G  VP++ T
Sbjct: 458 AKLGRIDFAEMIFERMD-IKDLVSWNSMINAYGMHGDGHLALRVFHQLKDAGTPVPNAIT 516

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL---- 513
           ++S+++AC H+GL ++G   F  M  ++ ++PS +HY CVVDLL R+G  ++A       
Sbjct: 517 FVSVISACSHSGLISEGYKCFESMGRDHSIEPSMDHYACVVDLLGRSGRFAEAEEFIRDM 576

Query: 514 ---------------------------AGKLLEGMGP--NIWRALLSGCVLHVGRFQDAE 544
                                      A K L  + P  +IWR  LS      GR++DA 
Sbjct: 577 PVHPNSSIWGPLLAACQLHGNVDLAEKAAKELSALEPESDIWRVSLSNTYASAGRWRDAA 636

Query: 545 ALRSGSQKKGIIKIPGISFLN 565
            +R+  ++ G+ K  G SF++
Sbjct: 637 KIRTEMRRVGLRKETGWSFVD 657



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 96/202 (47%), Gaps = 11/202 (5%)

Query: 273 LHAQVVLGGL----QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYV 328
           LHA ++  G     Q+ L  +NS++  Y +CG L  +  + +    +   ++ ++IS + 
Sbjct: 48  LHAALLKSGALRSPQAPLAATNSLLHAYLQCGLLSRALRLLDGTPRRDAATYASLISAHC 107

Query: 329 QNGCAREALNQFIKMRQ----EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGF 384
           + G   +AL  F+ M      +     +  T  ++L A G      +   +HG     GF
Sbjct: 108 RLGAPLDALRAFLDMLDWGCSDAAVRPNEFTAAAVLQACGLARDERLGRMVHGYLVAGGF 167

Query: 385 PRYRSVQNCLISSYSKCGNVDLAYIVFEEMGF-LRDVVSWNTIIYGYGVNGHGETALALY 443
                V   L++ Y+K G+V  A  +   +G   RDVVSW  II G  +NG  E  L ++
Sbjct: 168 CGDPFVVGSLVNMYAKAGDVVSARRLV--LGLPCRDVVSWTAIISGCVLNGMLEEGLEVF 225

Query: 444 HKMTETGEVPDSSTYLSILNAC 465
             M E G +P++ T LS++ AC
Sbjct: 226 VMMLEDGVLPNNVTMLSVIQAC 247


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 173/619 (27%), Positives = 304/619 (49%), Gaps = 66/619 (10%)

Query: 11  LLSNYFKSGKIKEAENLFDE--IPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           L++ Y K G +  A  LFD   + + + VSW+ +I  +   G   +++  F  M   G+ 
Sbjct: 189 LIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVE 248

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------------- 106
            N++T V  L A  G   +++ R IH +++K    +D+                      
Sbjct: 249 SNTYTFVSALQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERV 308

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           F+ +     VS N +++G + N ++  A+  F   + SG  P+ V++L +I       + 
Sbjct: 309 FKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANL 368

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYS---CLMDLDAAIQIFREMECKDVISWTRMM 223
                +H   IK G+  ++ + NS++DMY    C+  + +A   F  M  KD+ISWT ++
Sbjct: 369 LAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSA---FEYMPEKDLISWTTII 425

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
             +   E   DAL + R+++  ++  D + + +++   + L   K  K++H  V+ GGL 
Sbjct: 426 AGYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILLACSGLKSEKLIKEIHGYVLKGGL- 484

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
           +++ + N+I+ +Y +   +D +R VF  I  K +VSWT++I+  V NG A EAL  F  +
Sbjct: 485 ADILIQNAIVNVYGELALVDYARHVFESINSKDIVSWTSMITCCVHNGLAIEALELFNSL 544

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
            +   +  D ITLVS+L A+  L++L+   ++HG     GF     + N L+  Y++CG 
Sbjct: 545 IETNIEP-DLITLVSVLYAAAALSSLKKGKEIHGFLIRKGFFLEGLIANSLVDMYARCGT 603

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           ++ A  +F  +   RD++ W ++I   G++G G+ A+ L+ KMT+   +PD  T+L++L 
Sbjct: 604 MENARNIFNYVK-QRDLILWTSMINANGMHGCGKDAIDLFSKMTDENVLPDHITFLALLY 662

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
           AC H+GL  +G   F  M  E K++P  EHY C+VDLLAR+  L +A      +      
Sbjct: 663 ACSHSGLVVEGKQHFEIMKNEYKLEPWPEHYACLVDLLARSNSLEEAYHFVRNMPIEPSA 722

Query: 524 NIWRALLSGCVLHV---------------------------------GRFQDAEALRSGS 550
            +W ALL  C +H                                  GR+ D E +RS  
Sbjct: 723 EVWCALLGACRIHSNNDLGEVAAKKLLQLNTENSGNYVLVSNTFAADGRWNDVEEVRSIM 782

Query: 551 QKKGIIKIPGISFLNSTSR 569
           +   + K PG S++   ++
Sbjct: 783 KGNKLKKKPGCSWIEVENK 801



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 117/493 (23%), Positives = 238/493 (48%), Gaps = 26/493 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y S+ L++ Y   G++++AE +F  +  K+ VSW+ ++ G   N  +  ++  F  M 
Sbjct: 285 DVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQ 344

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------- 106
            SG  P+  +++ ++ A+    NL     +H   +K G++S++                 
Sbjct: 345 DSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVK 404

Query: 107 -----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                FE +    L+S   I+AG+  N+    A+ L    +   +  + + + +++  C 
Sbjct: 405 YMGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILLACS 464

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            L S  L + IHG  +K GL  D+ + N+++++Y  L  +D A  +F  +  KD++SWT 
Sbjct: 465 GLKSEKLIKEIHGYVLKGGLA-DILIQNAIVNVYGELALVDYARHVFESINSKDIVSWTS 523

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+   V    A +AL++F  + ++ I  D + L++++   A L  LK+GK++H  ++  G
Sbjct: 524 MITCCVHNGLAIEALELFNSLIETNIEPDLITLVSVLYAAAALSSLKKGKEIHGFLIRKG 583

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
              E  ++NS++ MY++CG ++++R++FN + ++ L+ WT++I+    +GC ++A++ F 
Sbjct: 584 FFLEGLIANSLVDMYARCGTMENARNIFNYVKQRDLILWTSMINANGMHGCGKDAIDLFS 643

Query: 342 KMRQEKTDSVDSITLVSILTASGELA-ALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
           KM  E     D IT +++L A       +E       +  E     +     CL+   ++
Sbjct: 644 KMTDENVLP-DHITFLALLYACSHSGLVVEGKQHFEIMKNEYKLEPWPEHYACLVDLLAR 702

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
             +++ AY     M        W  ++    ++ + +       K+ +     +S  Y+ 
Sbjct: 703 SNSLEEAYHFVRNMPIEPSAEVWCALLGACRIHSNNDLGEVAAKKLLQLN-TENSGNYVL 761

Query: 461 ILNACGHAGLTND 473
           + N     G  ND
Sbjct: 762 VSNTFAADGRWND 774



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 154/301 (51%), Gaps = 5/301 (1%)

Query: 172 IHGLTIKLGLILD-VSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFE 230
           +H   +K    LD V ++   + MY        A+++F +M  + + +W  M+G  V   
Sbjct: 68  LHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVKVFDKMSERTIFTWNAMIGACVSAG 127

Query: 231 YAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSN 290
              +A+++++EMR   +  D      ++       + + G ++H   V  G    + + N
Sbjct: 128 RYVEAIELYKEMRVLGVSLDAFTFPCVLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCN 187

Query: 291 SIIAMYSKCGDLDSSRSVFNQ--ITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
           ++IAMY+KCGDL  +R +F+   + +   VSW +IIS +V  G + EAL+ F +M++   
Sbjct: 188 ALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGV 247

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
           +S ++ T VS L A      ++I   +H +  ++       V N LI+ Y+ CG ++ A 
Sbjct: 248 ES-NTYTFVSALQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAE 306

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
            VF+ M F +D VSWNT++ G   N     A+  +  M ++G+ PD  + L+++ A G +
Sbjct: 307 RVFKSMLF-KDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRS 365

Query: 469 G 469
            
Sbjct: 366 A 366


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 158/520 (30%), Positives = 264/520 (50%), Gaps = 64/520 (12%)

Query: 60  SHMMLSGLLPNSFTMVGVLVAAA--GLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVS 117
           + M+ +GL  + F+   +  A+A      L+ AR             +LF+ +  P L +
Sbjct: 46  ARMLRTGLFFDPFSASKLFTASALSSFSTLDYAR-------------NLFDQIPQPNLYT 92

Query: 118 CNAIVAGFINNK-LFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLT 176
            N ++  + ++   FQ  V+  +       +PN  T   VI+    L +  +   +HG+ 
Sbjct: 93  WNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASELKASRVGTAVHGMA 152

Query: 177 IKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDAL 236
           IKL   +D+ + NS++  Y    DL  A ++F+ + CKDV+SW  M+  F       DAL
Sbjct: 153 IKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDAL 212

Query: 237 KIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMY 296
           ++F +M +  ++ ++V ++ ++S  A   DL+ G+ + + +   G++ +L L N+++ MY
Sbjct: 213 ELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMY 272

Query: 297 SKC-------------------------------GDLDSSRSVFNQITEKSLVSWTAIIS 325
           +KC                               GD D++R VFN +  K + +W  +IS
Sbjct: 273 TKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLIS 332

Query: 326 GYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFP 385
            Y QNG  +EAL  F +++  K    D +TLVS L+A  +L A+++   +H      G  
Sbjct: 333 AYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKREGI- 391

Query: 386 RYRSVQNC-LISS----YSKCGNVDLAYIVF---EEMGFLRDVVSWNTIIYGYGVNGHGE 437
               V NC LISS    Y+KCG+++ A  VF   EE    RDV  W+ +I G G++G G+
Sbjct: 392 ----VLNCHLISSLVDMYAKCGSLEKALEVFYSVEE----RDVYVWSAMIAGLGMHGRGK 443

Query: 438 TALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCV 497
            A+ L+ +M E    P+S T+ ++L AC HAGL ++G V F++M     V P  +HY C+
Sbjct: 444 AAIDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVPEMKHYACM 503

Query: 498 VDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHV 537
           VD+L RAG L +A  L  ++      ++W ALL  C LH+
Sbjct: 504 VDILGRAGFLEEAMELINEMSTTPSASVWGALLGACSLHM 543



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 131/524 (25%), Positives = 238/524 (45%), Gaps = 100/524 (19%)

Query: 3   IDPYNSSKLLSNYFKSG--KIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
            DP+++SKL +    S    +  A NLFD+IP+ N+ +W+ +I  Y+ +    +S   F 
Sbjct: 55  FDPFSASKLFTASALSSFSTLDYARNLFDQIPQPNLYTWNTLIRAYASSSDPFQSFVIFL 114

Query: 61  HMM-LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK--FGLE-------------- 103
            ++     LPN FT   V+ AA+ L+   +  ++HG+ +K  FG++              
Sbjct: 115 DLLDKCEDLPNKFTFPFVIKAASELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGAC 174

Query: 104 ------SDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
                   LF+G+    +VS N++++ F      + A+ LF       ++PN+VTM+ V+
Sbjct: 175 GDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVL 234

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
             C           +     + G+ +D+++ N++LDMY+    +D A ++F EM  +DV 
Sbjct: 235 SACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVF 294

Query: 218 SWTRMMGLFV---DFEYA----------------------------GDALKIFREMRKSR 246
           SWT M+  +    D++ A                             +AL IF E++ S+
Sbjct: 295 SWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSK 354

Query: 247 II-CDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSS 305
           I   D V L++ +S  A LG +  G  +H  +   G+     L +S++ MY+KCG L+ +
Sbjct: 355 IAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKREGIVLNCHLISSLVDMYAKCGSLEKA 414

Query: 306 RSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGE 365
             VF  + E+ +  W+A+I+G   +G  + A++ F +M++ K    +S+T  ++L A   
Sbjct: 415 LEVFYSVEERDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKVKP-NSVTFTNVLCAC-- 471

Query: 366 LAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM----GFLRDVV 421
                                            S  G VD   + F EM    G + ++ 
Sbjct: 472 ---------------------------------SHAGLVDEGRVFFHEMEPVYGVVPEMK 498

Query: 422 SWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            +  ++   G  G  E A+ L ++M+ T   P +S + ++L AC
Sbjct: 499 HYACMVDILGRAGFLEEAMELINEMSTT---PSASVWGALLGAC 539


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 158/490 (32%), Positives = 261/490 (53%), Gaps = 32/490 (6%)

Query: 75  VGVLVAAAG-LQNLELARSIHGLM---VKF-----------------GLESD---LFEGL 110
           +GVL+ A G  +++E+ R +H ++    +F                 G  SD   +F+ L
Sbjct: 108 MGVLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKL 167

Query: 111 KNPYLVSCNAIVAGFINNKLFQQAVLLFN-FFRGSGLVPNAVTMLTVIRGCVALGSRALC 169
           +   L   NAIV+ +  N+LF+ A+ +F+     +   P+  T+  VI+ C  L    L 
Sbjct: 168 RRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLG 227

Query: 170 ELIHGLTIKLGLILDVSVNNSVLDMY-SCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
           ++IHG+  K+ L+ DV V N+++ MY  C +  +A  ++F  M+ K V SW  ++  +  
Sbjct: 228 QIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQ 287

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
                 AL ++ +M  S +  D   + +L+   + +  L  G+++H   +  GL  +  +
Sbjct: 288 NSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFI 347

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
             S++++Y  CG   +++ +F+ +  +SLVSW  +I+GY QNG   EA+N F   RQ  +
Sbjct: 348 GISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLF---RQMLS 404

Query: 349 DSVD--SITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
           D +    I ++ +  A  +L+AL +  +LH  A +A       V + +I  Y+K G + L
Sbjct: 405 DGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGL 464

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           +  +F+ +   +DV SWN II GYG++G G+ AL L+ KM   G  PD  T+  IL AC 
Sbjct: 465 SQRIFDRLR-EKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACS 523

Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIW 526
           HAGL  DGL  FNQM+  + ++P  EHY CVVD+L RAG + DA  L  ++       IW
Sbjct: 524 HAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIW 583

Query: 527 RALLSGCVLH 536
            +LLS C +H
Sbjct: 584 SSLLSSCRIH 593



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 144/547 (26%), Positives = 251/547 (45%), Gaps = 75/547 (13%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C D   ++++++ Y   G   ++  +FD++  KN+  W+ ++  Y+ N   E +M  FS 
Sbjct: 138 CNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSE 197

Query: 62  MM-LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG----------- 109
           ++ ++   P++FT+  V+ A AGL +L L + IHG+  K  L SD+F G           
Sbjct: 198 LISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCG 257

Query: 110 ------------LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
                       +    + S NA++ G+  N   ++A+ L+     SGL P+  T+ +++
Sbjct: 258 LVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLL 317

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
             C  + S    E IHG  ++ GL +D  +  S+L +Y C     AA  +F  ME + ++
Sbjct: 318 LACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLV 377

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           SW  M+  +       +A+ +FR+M    I    +A++ +    + L  L+ GK+LH   
Sbjct: 378 SWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFA 437

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           +   L  ++ +S+SII MY+K G +  S+ +F+++ EK + SW  II+GY  +G  +EAL
Sbjct: 438 LKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEAL 497

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQ-------LHGIAFEAGFPRYRSV 390
             F KM +      D  T   IL A      +E  L+       LH I  E     Y   
Sbjct: 498 ELFEKMLRLGLKP-DDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNI--EPKLEHY--- 551

Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
             C++    + G +D A  + EEM                                   G
Sbjct: 552 -TCVVDMLGRAGRIDDALRLIEEM----------------------------------PG 576

Query: 451 EVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
           + PDS  + S+L++C   G    G  + N+++E    KP  E+Y  + +L A +G   D 
Sbjct: 577 D-PDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKP--ENYVLISNLFAGSGKWDDV 633

Query: 511 SGLAGKL 517
             + G++
Sbjct: 634 RRVRGRM 640


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 161/576 (27%), Positives = 297/576 (51%), Gaps = 54/576 (9%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L++ Y K G + +A  +FD I E++ VSW+ +I         E ++KAF  M++ G  P+
Sbjct: 53  LVNMYGKCGGLGDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPS 112

Query: 71  SFTMVGVLVAAAGLQN---LELARSIHG------------------LMVKFGLESD---- 105
           SFT+V + +A + L+    L L + IHG                  +  K G   D    
Sbjct: 113 SFTLVSMALACSNLRKRDGLWLGKQIHGCCFRKGHWRTFSNNALMAMYAKLGRLDDAKSL 172

Query: 106 --LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
             LFE   +  LV+ N++++ F  N+ F +A++        G+ P+ VT  +V+  C  L
Sbjct: 173 LVLFE---DRDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHL 229

Query: 164 GSRALCELIHGLTIKLGLILDVS-VNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
                 + IH   ++   +++ S V ++++DMY     +++   +F  +  + +  W  M
Sbjct: 230 DLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAM 289

Query: 223 MGLFVDFEYAGDALKIFREMRKSR-IICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           +  +   E+   AL +F EM  +  +  +   + +++        + R + +H  V+  G
Sbjct: 290 IAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIKRG 349

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           L++   L N++I MYS+ GD+ +S+ +F+ + ++ +VSW  II+ YV  G + +AL    
Sbjct: 350 LETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDALLLLH 409

Query: 342 KM-RQEKTDSVD--------------SITLVSILTASGELAALEICLQLHGIAFEAGFPR 386
           +M R E+  + D              SITL+++L     L+AL    ++H  A       
Sbjct: 410 EMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSALAKGKEIHAYAIRNLLAS 469

Query: 387 YRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM 446
             +V + L+  Y+KCG ++LA  VF++M  +R+V++WN II  YG++G G+ +L L+  M
Sbjct: 470 QVTVGSALVDMYAKCGCLNLARRVFDQMP-IRNVITWNVIIMAYGMHGKGKESLELFEDM 528

Query: 447 ----TETGEV-PDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLL 501
                + GEV P   T++++  +C H+G+ ++GL +F++M  E+ ++P+ +HY C+VDL+
Sbjct: 529 VAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSLFHKMKNEHGIEPAPDHYACIVDLV 588

Query: 502 ARAGCLSDASGLAGKLLEGMGP-NIWRALLSGCVLH 536
            RAG + +A GL   +  G      W +LL  C ++
Sbjct: 589 GRAGKVEEAYGLVNTMPSGFDKVGAWSSLLGACRIY 624



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 148/559 (26%), Positives = 251/559 (44%), Gaps = 69/559 (12%)

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES----------------- 104
           M+ SG  P++F    VL A AG+Q L L + IH  + KFG  S                 
Sbjct: 1   MIGSGFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKC 60

Query: 105 -------DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
                   +F+ +     VS N+I++     + ++ A+  F      G  P++ T++++ 
Sbjct: 61  GGLGDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMA 120

Query: 158 RGCVALGSRA---LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
             C  L  R    L + IHG   + G     S NN+++ MY+ L  LD A  +    E +
Sbjct: 121 LACSNLRKRDGLWLGKQIHGCCFRKGHWRTFS-NNALMAMYAKLGRLDDAKSLLVLFEDR 179

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
           D+++W  M+  F   E   +AL   R M    +  D V   +++   + L  L+ GK++H
Sbjct: 180 DLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIH 239

Query: 275 AQVVLGGLQSELRLSNS-----IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQ 329
           A      L+++  + NS     ++ MY  CG ++S R VF+ + ++ +  W A+I+GY Q
Sbjct: 240 AY----ALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQ 295

Query: 330 NGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS 389
           +    +AL  FI+M        ++ T+ SI+ A      +     +HG   + G    R 
Sbjct: 296 SEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIKRGLETNRY 355

Query: 390 VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
           +QN LI  YS+ G++  +  +F+ M   RD+VSWNTII  Y + G    AL L H+M   
Sbjct: 356 LQNALIDMYSRMGDIKTSKRIFDSMED-RDIVSWNTIITSYVICGRSSDALLLLHEMQRI 414

Query: 450 GE----------------VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEH 493
            E                 P+S T +++L  C        G  I    I    +  SQ  
Sbjct: 415 EEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSALAKGKEIHAYAI--RNLLASQVT 472

Query: 494 YG-CVVDLLARAGCLSDASGLAGKLLEGMGPN---IWRALLSGCVLHVGRFQDA----EA 545
            G  +VD+ A+ GCL+    LA ++ + M       W  ++    +H G+ +++    E 
Sbjct: 473 VGSALVDMYAKCGCLN----LARRVFDQMPIRNVITWNVIIMAYGMH-GKGKESLELFED 527

Query: 546 LRSGSQKKGIIKIPGISFL 564
           + +   K G +K   ++F+
Sbjct: 528 MVAEGAKGGEVKPTEVTFI 546



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 131/537 (24%), Positives = 256/537 (47%), Gaps = 77/537 (14%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           ++++ L++ Y K G++ +A++L     ++++V+W+ +I  +S N    +++     M+L 
Sbjct: 151 FSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMISSFSQNERFMEALMFLRLMVLE 210

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-------------------- 105
           G+ P+  T   VL A + L  L   + IH     + L +D                    
Sbjct: 211 GVKPDGVTFASVLPACSHLDLLRTGKEIHA----YALRTDDVIENSFVGSALVDMYCNCG 266

Query: 106 -------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLF-NFFRGSGLVPNAVTMLTVI 157
                  +F+ + +  +   NA++AG+  ++  ++A++LF      +GL  NA TM +++
Sbjct: 267 QVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIV 326

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
              V     +  E IHG  IK GL  +  + N+++DMYS + D+  + +IF  ME +D++
Sbjct: 327 PAYVRCEGISRKEGIHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIV 386

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMR----KSRIICD------------TVALLNLISVN 261
           SW  ++  +V    + DAL +  EM+    KS    D            ++ L+ ++   
Sbjct: 387 SWNTIITSYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGC 446

Query: 262 AILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWT 321
           A L  L +GK++HA  +   L S++ + ++++ MY+KCG L+ +R VF+Q+  +++++W 
Sbjct: 447 ASLSALAKGKEIHAYAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIRNVITWN 506

Query: 322 AIISGYVQNGCAREALNQFIKMRQEKTDSVD----SITLVSILTASGELAALEICLQL-H 376
            II  Y  +G  +E+L  F  M  E     +     +T +++  +      ++  L L H
Sbjct: 507 VIIMAYGMHGKGKESLELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSLFH 566

Query: 377 GIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM--GFLRDVVSWNTIIYGYGVNG 434
            +  E G         C++    + G V+ AY +   M  GF + V +W++++       
Sbjct: 567 KMKNEHGIEPAPDHYACIVDLVGRAGKVEEAYGLVNTMPSGFDK-VGAWSSLL------- 618

Query: 435 HGETALALYHKMTETGEV---------PD-SSTYLSILNACGHAGLTNDGLVIFNQM 481
               A  +YH + E GE+         PD +S Y+ + N    AGL +  + +  +M
Sbjct: 619 ---GACRIYHNI-EIGEIAAENLLQLQPDVASHYVLLSNIYSSAGLWDKAMNLRRRM 671


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 145/535 (27%), Positives = 257/535 (48%), Gaps = 71/535 (13%)

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           F+ LK+P +++  +++  F +  LF +A+  F   R SG  P+     +V++ C  +   
Sbjct: 62  FKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDL 121

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMY------------------------------- 195
              E +HG  ++LG+  D+   N++++MY                               
Sbjct: 122 RFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDV 181

Query: 196 ---SCLMD--LDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICD 250
              +C+M   +D+  ++F  M  KDV+S+  ++  +       DAL++ REM  + +  D
Sbjct: 182 KAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPD 241

Query: 251 TVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFN 310
           +  L +++ + +   D+ +GK++H  V+  G+ S++ + +S++ MY+K   ++ S  VF+
Sbjct: 242 SFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFS 301

Query: 311 QITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALE 370
           ++  +  +SW ++++GYVQNG   EAL  F +M   K     ++   S++ A   LA L 
Sbjct: 302 RLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKP-GAVAFSSVIPACAHLATLH 360

Query: 371 ICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGY 430
           +  QLHG     GF     + + L+  YSKCGN+  A  +F+ M  L D VSW  II G+
Sbjct: 361 LGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVL-DEVSWTAIIMGH 419

Query: 431 GVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPS 490
            ++GHG  A++L+ +M   G  P+   ++++L AC H GL ++    FN M +   +   
Sbjct: 420 ALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQE 479

Query: 491 QEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHV------------- 537
            EHY  V DLL RAG L +A     K+      ++W  LLS C +H              
Sbjct: 480 LEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIF 539

Query: 538 --------------------GRFQDAEALRSGSQKKGIIKIPGISFLNSTSRDFG 572
                               GR+++   LR   +KKG+ K P  S++   ++  G
Sbjct: 540 TVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHG 594



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 190/359 (52%), Gaps = 16/359 (4%)

Query: 97  MVKFGLES--DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTML 154
           ++ FG++S   +FE +    +VS N I+AG+  + +++ A+ +      + L P++ T+ 
Sbjct: 187 IMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLS 246

Query: 155 TVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
           +V+            + IHG  I+ G+  DV + +S++DMY+    ++ + ++F  + C+
Sbjct: 247 SVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCR 306

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
           D ISW  ++  +V      +AL++FR+M  +++    VA  ++I   A L  L  GKQLH
Sbjct: 307 DGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLH 366

Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
             V+ GG  S + ++++++ MYSKCG++ ++R +F+++     VSWTAII G+  +G   
Sbjct: 367 GYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGH 426

Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEIC-------LQLHGIAFEAGFPRY 387
           EA++ F +M+++     + +  V++LTA   +  ++          +++G+  E     Y
Sbjct: 427 EAVSLFEEMKRQGVKP-NQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQE--LEHY 483

Query: 388 RSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM 446
            +V + L     + G ++ AY    +M        W+T++    V+ + E A  +  K+
Sbjct: 484 AAVADLL----GRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKI 538



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 89/391 (22%), Positives = 193/391 (49%), Gaps = 38/391 (9%)

Query: 21  IKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVA 80
           I     +F+ +P K+VVS++ +I GY+ +G +E +++    M  + L P+SFT+  VL  
Sbjct: 192 IDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPI 251

Query: 81  AAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPYL--------------------VSC 118
            +   ++   + IHG +++ G++SD++ G  L + Y                     +S 
Sbjct: 252 FSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISW 311

Query: 119 NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIK 178
           N++VAG++ N  + +A+ LF     + + P AV   +VI  C  L +  L + +HG  ++
Sbjct: 312 NSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLR 371

Query: 179 LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKI 238
            G   ++ + ++++DMYS   ++ AA +IF  M   D +SWT ++       +  +A+ +
Sbjct: 372 GGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSL 431

Query: 239 FREMRKSRIICDTVALLNLISVNAILGDLKRG-KQLHAQVVLGGLQSELRLSNSIIAMYS 297
           F EM++  +  + VA + +++  + +G +       ++   + GL  EL    ++  +  
Sbjct: 432 FEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLG 491

Query: 298 KCGDLDSSRSVFNQI-TEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDS--- 353
           + G L+ + +  +++  E +   W+ ++S      C+     +  +   EK  +VDS   
Sbjct: 492 RAGKLEEAYNFISKMCVEPTGSVWSTLLS-----SCSVHKNLELAEKVAEKIFTVDSENM 546

Query: 354 ---ITLVSILTASG---ELAALEICLQLHGI 378
              + + ++  ++G   E+A L + ++  G+
Sbjct: 547 GAYVLMCNMYASNGRWKEMAKLRLRMRKKGL 577



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 105/442 (23%), Positives = 194/442 (43%), Gaps = 52/442 (11%)

Query: 155 TVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
           T+I+    + S++  + +H   I+   +   S +  V+ +Y+ L  L  A+ +F+ ++  
Sbjct: 10  TLIKNPTRIKSKSQAKQLHAQFIRTQSLSHTSAS-IVISIYTNLKLLHEALLLFKTLKSP 68

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
            V++W  ++  F D      AL  F EMR S    D     +++    ++ DL+ G+ +H
Sbjct: 69  PVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVH 128

Query: 275 AQVVLGGLQSELRLSNSIIAMYSK-----------------------CGD---------- 301
             +V  G+  +L   N+++ MY+K                        GD          
Sbjct: 129 GFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIM 188

Query: 302 ---LDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD-SVDSITLV 357
              +DS R VF  +  K +VS+  II+GY Q+G   +AL    +M    TD   DS TL 
Sbjct: 189 PFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREM--GTTDLKPDSFTLS 246

Query: 358 SILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFL 417
           S+L    E   +    ++HG     G      + + L+  Y+K   ++ +  VF  + + 
Sbjct: 247 SVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRL-YC 305

Query: 418 RDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVI 477
           RD +SWN+++ GY  NG    AL L+ +M      P +  + S++ AC H    + G  +
Sbjct: 306 RDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQL 365

Query: 478 FNQMIE----ENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGC 533
              ++      N    S      +VD+ ++ G +  A  +  + +  +    W A++ G 
Sbjct: 366 HGYVLRGGFGSNIFIAS-----ALVDMYSKCGNIKAARKIFDR-MNVLDEVSWTAIIMGH 419

Query: 534 VLHVGRFQDAEALRSGSQKKGI 555
            LH G   +A +L    +++G+
Sbjct: 420 ALH-GHGHEAVSLFEEMKRQGV 440



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 87/183 (47%), Gaps = 22/183 (12%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  S L+  Y KS +I+++E +F  +  ++ +SW+ ++ GY  NG + ++++ F  M+
Sbjct: 276 DVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMV 335

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPYL------ 115
            + + P +     V+ A A L  L L + +HG +++ G  S++F    L + Y       
Sbjct: 336 TAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIK 395

Query: 116 --------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                         VS  AI+ G   +    +AV LF   +  G+ PN V  + V+  C 
Sbjct: 396 AARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACS 455

Query: 162 ALG 164
            +G
Sbjct: 456 HVG 458



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 52/100 (52%), Gaps = 1/100 (1%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           +S L+  Y K G IK A  +FD +   + VSW+ +I G++++G   +++  F  M   G+
Sbjct: 381 ASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGV 440

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVK-FGLESDL 106
            PN    V VL A + +  ++ A      M K +GL  +L
Sbjct: 441 KPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQEL 480


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 161/541 (29%), Positives = 263/541 (48%), Gaps = 58/541 (10%)

Query: 81  AAGLQNLELARSIHGLMVKFGLESD----------------------LFEGLKNPYLVSC 118
           A GL++L  A+  H L+++ GL  D                      +F    +P +   
Sbjct: 10  AWGLKSLHQAKQCHCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQTPHPNIFLY 69

Query: 119 NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCEL-IHGLTI 177
           N ++ G ++N  F+ AV ++   R  G  P+  T   V++ C  L       L +H L I
Sbjct: 70  NTLIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVI 129

Query: 178 KLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALK 237
           K G   DV V   ++ +YS    L  A ++F E+  K+V+SWT ++  +++    G+AL 
Sbjct: 130 KTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALG 189

Query: 238 IFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYS 297
           +FR + +  +  D+  L+ ++   + +GDL  G+ +   +   G    + ++ S++ MY+
Sbjct: 190 LFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMYA 249

Query: 298 KCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLV 357
           KCG ++ +R VF+ + EK +V W+A+I GY  NG  +EAL+ F +M++E     D   +V
Sbjct: 250 KCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRP-DCYAMV 308

Query: 358 SILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFL 417
            + +A   L ALE+     G+     F     +   LI  Y+KCG+V  A  VF+ M   
Sbjct: 309 GVFSACSRLGALELGNWARGLMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGMR-R 367

Query: 418 RDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVI 477
           +D V +N +I G  + GH   A  ++ +M + G  PD +T++ +L  C HAGL +DG   
Sbjct: 368 KDCVVFNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLCGCTHAGLVDDGHRY 427

Query: 478 FNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHV 537
           F+ M     V P+ EHYGC+VDL ARAG L +A  L   +       +W ALL GC LH 
Sbjct: 428 FSGMSSVFSVTPTIEHYGCMVDLQARAGLLVEAQDLIRSMPMEANSIVWGALLGGCRLHK 487

Query: 538 G---------------------------------RFQDAEALRSGSQKKGIIKIPGISFL 564
                                             R+ +AE +RS   +KG+ K+PG S++
Sbjct: 488 DTQLAEHVLKQLIELEPWNSGHYVLLSNIYSASHRWDEAEKIRSSLNQKGMQKLPGCSWV 547

Query: 565 N 565
            
Sbjct: 548 E 548



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 90/392 (22%), Positives = 178/392 (45%), Gaps = 39/392 (9%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L+  Y K+G + +A  +FDEIPEKNVVSW+ +I GY  +G   +++  F  ++
Sbjct: 136 DVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLFRGLL 195

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
             GL P+SFT+V +L A + + +L   R I G M + G   +                  
Sbjct: 196 EMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMYAKCGSME 255

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +F+G+    +V  +A++ G+ +N + ++A+ +F   +   + P+   M+ V   C 
Sbjct: 256 EARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSACS 315

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            LG+  L     GL      + +  +  +++D Y+    +  A ++F+ M  KD + +  
Sbjct: 316 RLGALELGNWARGLMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGMRRKDCVVFNA 375

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++       + G A  +F +M K  +  D    + L+      G +  G +        G
Sbjct: 376 VISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLCGCTHAGLVDDGHRY-----FSG 430

Query: 282 LQSELRLSNSI------IAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISG---YVQNG 331
           + S   ++ +I      + + ++ G L  ++ +   +  E + + W A++ G   +    
Sbjct: 431 MSSVFSVTPTIEHYGCMVDLQARAGLLVEAQDLIRSMPMEANSIVWGALLGGCRLHKDTQ 490

Query: 332 CAREALNQFIKMRQEKTDSVDSITLVSILTAS 363
            A   L Q I++  E  +S   + L +I +AS
Sbjct: 491 LAEHVLKQLIEL--EPWNSGHYVLLSNIYSAS 520


>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
           [Vitis vinifera]
          Length = 788

 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 170/627 (27%), Positives = 288/627 (45%), Gaps = 124/627 (19%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM- 62
           +P   + +++ Y K+ +  EA  LFD +P K++VSW+ ++ GY+ NG     ++ F  M 
Sbjct: 139 NPVCCNAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMA 198

Query: 63  ---------MLSGLL-----------------PNSFTMVGVLVAAAGLQNLELARSIHGL 96
                    M+ G +                 PN+ + V +L   A    +  AR     
Sbjct: 199 ERDVVSWNLMVDGFVEVGDLNSSWEFFEKIPNPNTVSWVTMLCGFARFGKIAEARR---- 254

Query: 97  MVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTV 156
                    LF+ +    +V+ NA++A ++ N    +A+ LF          N+++  TV
Sbjct: 255 ---------LFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEMPEK----NSISWTTV 301

Query: 157 IRGCVALGS-RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKD 215
           I G V +G      +L++ +  +     +V+   +++  Y     +D A QIF ++  +D
Sbjct: 302 INGYVRMGKLDEARQLLNQMPYR-----NVAAQTAMISGYVQNKRMDDARQIFNQISIRD 356

Query: 216 VISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
           V+ W  M+  +       +AL +F++M K  I+                           
Sbjct: 357 VVCWNTMIAGYSQCGRMDEALHLFKQMVKKDIVS-------------------------- 390

Query: 276 QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
                         N+++A Y++ G +D++  +F ++ EK++VSW ++ISG  QNG   +
Sbjct: 391 -------------WNTMVASYAQVGQMDAAIKIFEEMKEKNIVSWNSLISGLTQNGSYLD 437

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLI 395
           AL  F+ M  E     D  T    L++   LAAL++  QLH +  ++G+     V N LI
Sbjct: 438 ALKSFMLMGHEGQKP-DQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALI 496

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
           + Y+KCG++  A ++F+++    DVVSWN++I  Y +NG+G  AL L+HKM   G  PD 
Sbjct: 497 TMYAKCGSISSAELLFKDIDHF-DVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDE 555

Query: 456 STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAG 515
            T++ IL+AC H GL + GL +F  M++   ++P  EHY C+VDLL RAG L +A  L  
Sbjct: 556 VTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLAEHYACMVDLLGRAGRLEEAFQLVR 615

Query: 516 KLLEGMGPNIWRALLSGCVLH---------------------------------VGRFQD 542
            +       IW ALL  C +H                                  GR+ +
Sbjct: 616 GMKINANAGIWGALLGACRIHGNLELAKFAAEKLLEFEPHKTSNYVLLSNMQAEAGRWDE 675

Query: 543 AEALRSGSQKKGIIKIPGISFLNSTSR 569
              +R   ++KG  K PG S++   +R
Sbjct: 676 VARVRRLMKEKGAEKQPGWSWIELQNR 702



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 132/547 (24%), Positives = 233/547 (42%), Gaps = 82/547 (14%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  D  + + +L+ Y ++G+++     F+E+ E++VVSW++++ G+   G    S + F 
Sbjct: 167 PAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEVGDLNSSWEFFE 226

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNA 120
            +      PN+ + V +L   A    +  AR              LF+ +    +V+ NA
Sbjct: 227 KI----PNPNTVSWVTMLCGFARFGKIAEARR-------------LFDQMPIRNVVAWNA 269

Query: 121 IVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS--------------- 165
           ++A ++ N    +A+ LF          N+++  TVI G V +G                
Sbjct: 270 MIAAYVQNCHVDEAISLFMEMPEK----NSISWTTVINGYVRMGKLDEARQLLNQMPYRN 325

Query: 166 -RALCELIHGLTIKLGL-----------ILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC 213
             A   +I G      +           I DV   N+++  YS    +D A+ +F++M  
Sbjct: 326 VAAQTAMISGYVQNKRMDDARQIFNQISIRDVVCWNTMIAGYSQCGRMDEALHLFKQMVK 385

Query: 214 KDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIIC------------------------ 249
           KD++SW  M+  +        A+KIF EM++  I+                         
Sbjct: 386 KDIVSWNTMVASYAQVGQMDAAIKIFEEMKEKNIVSWNSLISGLTQNGSYLDALKSFMLM 445

Query: 250 -------DTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDL 302
                  D       +S  A L  L+ GKQLH  V+  G  ++L +SN++I MY+KCG +
Sbjct: 446 GHEGQKPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSI 505

Query: 303 DSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTA 362
            S+  +F  I    +VSW ++I+ Y  NG  REAL  F KM  E   + D +T V IL+A
Sbjct: 506 SSAELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGV-APDEVTFVGILSA 564

Query: 363 SGELAALEICLQLHGIAFEA-GFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVV 421
              +  ++  L+L     +A           C++    + G ++ A+ +   M    +  
Sbjct: 565 CSHVGLIDQGLKLFKCMVQAYNIEPLAEHYACMVDLLGRAGRLEEAFQLVRGMKINANAG 624

Query: 422 SWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQM 481
            W  ++    ++G+ E A     K+ E  E   +S Y+ + N    AG  ++   +   M
Sbjct: 625 IWGALLGACRIHGNLELAKFAAEKLLEF-EPHKTSNYVLLSNMQAEAGRWDEVARVRRLM 683

Query: 482 IEENKVK 488
            E+   K
Sbjct: 684 KEKGAEK 690


>gi|222632692|gb|EEE64824.1| hypothetical protein OsJ_19680 [Oryza sativa Japonica Group]
          Length = 688

 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 167/537 (31%), Positives = 269/537 (50%), Gaps = 15/537 (2%)

Query: 12  LSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSG--LLP 69
           L    +S ++ +A  LFD +P ++ V+++ ++ G++  G    +M  FS +  S   L P
Sbjct: 32  LKQLARSSRLADAHRLFDGMPRRDEVAYATLLAGHAAAGDFPGAMALFSRLRASSPPLAP 91

Query: 70  -NSFTMVGVL---VAAAGLQNLELARSIHGLMVK-FGLESDLFEGLKNPYLVSCNAIVAG 124
            + F +  V     AAA  + L  A S+H       GL   +F+ + +  +VS   +VA 
Sbjct: 92  ADPFVLSLVFKSCAAAADARFLPHAASLHAFAAGCLGLALKVFDEMPHKNVVSWTTLVAS 151

Query: 125 FINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILD 184
                   +A+  F+  R SG+  ++      +  C   G  +    +H    KLGL   
Sbjct: 152 LTRAGRRHEALRRFSEMRASGVHCDSYAYAAALTACADAGLLSRGREVHAFCAKLGLDST 211

Query: 185 VSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIF-REMR 243
             V N++  +Y+   D+D A+     M  +DV +WT ++  +V    A +A++ F R +R
Sbjct: 212 PYVANTLATLYARCSDVDRALAAVSRMGTRDVAAWTTVISAYVQTGRAKEAIEAFVRMLR 271

Query: 244 KSRIICDTVALLNLISVNAILGDLKR---GKQLHAQVVLGGLQSELRLSNSIIAMYSKC- 299
           +   +  +       +V A   D+     G+QLHAQ    G      ++NS++ +Y++  
Sbjct: 272 EESSVAASPNEYTYAAVIAACADIAWVCLGEQLHAQAARKGFACARSVANSLVTLYTRAA 331

Query: 300 GDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK-TDSVDSITLVS 358
           G L ++ +VF +   K +VSW+AIISGY Q G A +A   F +MR        +  TL S
Sbjct: 332 GCLSAADAVFRESVVKDVVSWSAIISGYAQEGLAEDAFALFREMRHHSGCPRPNEFTLAS 391

Query: 359 ILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLR 418
           +L+     A+L+   QLH +A  AG   +  +++ LI  Y K G++  A IVF       
Sbjct: 392 LLSVCATAASLDAGRQLHTLAVAAGLEHHAMIRSALIDMYGKSGSMLDADIVFSHR-VKD 450

Query: 419 DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIF 478
           DVVSW  +I GY  +GH + AL L+ +M   G  PD  T++ +LNAC HAG    GL   
Sbjct: 451 DVVSWTAMIVGYAEHGHSKKALELFQEMCHVGLKPDHVTFIGVLNACCHAGEVELGLRYL 510

Query: 479 NQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN-IWRALLSGCV 534
           N+M +   + P++EHYGCVVDLL RAG +++A  L GK+        +W +LL  C 
Sbjct: 511 NEMNQIYGLYPAKEHYGCVVDLLGRAGRINEAEELIGKIAANERDGVVWTSLLRACA 567



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 77/362 (21%), Positives = 153/362 (42%), Gaps = 38/362 (10%)

Query: 5   PYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML 64
           PY ++ L + Y +   +  A      +  ++V +W+ VI  Y   G  +++++AF  M+ 
Sbjct: 212 PYVANTLATLYARCSDVDRALAAVSRMGTRDVAAWTTVISAYVQTGRAKEAIEAFVRMLR 271

Query: 65  S----GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK--FGLESDLFEGLKNPY---- 114
                   PN +T   V+ A A +  + L   +H    +  F     +   L   Y    
Sbjct: 272 EESSVAASPNEYTYAAVIAACADIAWVCLGEQLHAQAARKGFACARSVANSLVTLYTRAA 331

Query: 115 -----------------LVSCNAIVAGFINNKLFQQAVLLFNFFR-GSGLV-PNAVTMLT 155
                            +VS +AI++G+    L + A  LF   R  SG   PN  T+ +
Sbjct: 332 GCLSAADAVFRESVVKDVVSWSAIISGYAQEGLAEDAFALFREMRHHSGCPRPNEFTLAS 391

Query: 156 VIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMY---SCLMDLDAAIQIFREME 212
           ++  C    S      +H L +  GL     + ++++DMY     ++D D    +F    
Sbjct: 392 LLSVCATAASLDAGRQLHTLAVAAGLEHHAMIRSALIDMYGKSGSMLDADI---VFSHRV 448

Query: 213 CKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG-K 271
             DV+SWT M+  + +  ++  AL++F+EM    +  D V  + +++     G+++ G +
Sbjct: 449 KDDVVSWTAMIVGYAEHGHSKKALELFQEMCHVGLKPDHVTFIGVLNACCHAGEVELGLR 508

Query: 272 QLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT--EKSLVSWTAIISGYVQ 329
            L+    + GL         ++ +  + G ++ +  +  +I   E+  V WT+++     
Sbjct: 509 YLNEMNQIYGLYPAKEHYGCVVDLLGRAGRINEAEELIGKIAANERDGVVWTSLLRACAA 568

Query: 330 NG 331
            G
Sbjct: 569 RG 570


>gi|414867301|tpg|DAA45858.1| TPA: hypothetical protein ZEAMMB73_727333 [Zea mays]
          Length = 805

 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 174/626 (27%), Positives = 304/626 (48%), Gaps = 63/626 (10%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAF---S 60
           D +  S L+  Y K  ++ +++  F+EI +K++VS++ +I GYS N     S  AF   S
Sbjct: 178 DKFVGSSLVGLYSKLARMDDSQKAFEEILDKDIVSYTSMITGYSEN-MDSTSWNAFKIVS 236

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK--FGLESDLFEG--------- 109
            M  S L  N  T+V +L  A  L  +   +S+H   ++   G+  ++ E          
Sbjct: 237 DMSWSNLEVNRVTLVSLLQVAGNLGAIREGKSVHCYSIRRDIGISDEVLETSLVHMYMQC 296

Query: 110 ---------LKNPY--LVSCNAIVAGFINNKLFQQAV-LLFNFFRGSGLVPNAVTMLTVI 157
                    LKN    + S NA++AG +       A+  L+       +VP++VT   VI
Sbjct: 297 GACQLASAVLKNSAQSVASWNAMLAGLVRTGQSGNAIHYLYIMLYEHKVVPDSVTYANVI 356

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
             C  L +      +H   I+  + LDV +  +++ +Y     +  + ++F ++  KD +
Sbjct: 357 SACAELCNSGYAASVHAYIIRRSIPLDVVLATALIKVYLKCTRITISKRLFNQLVVKDTV 416

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           S+  M+  ++      +A+ + +EM    +  + V +L+L++  A   D  RG+ +H   
Sbjct: 417 SYNAMIYGYLQNGMVNEAIALLKEMVTECVAPNFVTILSLLAAIADHKDFARGRWIHGFS 476

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           +  G  S + ++N II MYS CG + S+R VF     K+L+SWT ++ G +  G   + +
Sbjct: 477 IRHGFCSNVDIANQIIRMYSGCGKIASARIVFASFENKNLISWTTMMMGCLFCGHGGQTV 536

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
             F  + Q+  +  DSI +++ + A  E   L+   Q+H   + A   +     N LI++
Sbjct: 537 ELFQLLMQQHDNKPDSIAVMTAIQAVSEFGHLKGVKQVHCFVYRALLEKDTKTMNSLITA 596

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           Y+KCG +DL+  +F  +   RD+ SWN++I  YG++G     L ++  M E    PD  T
Sbjct: 597 YAKCGRLDLSVSLFLSLEH-RDLDSWNSMISAYGMHGFYTKVLEMFKLMEEGNINPDGLT 655

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAG------------ 505
           + S+L+AC HAGL  +GL IF  M     V+P +EHYGC VDL++RAG            
Sbjct: 656 FSSVLSACSHAGLIKEGLHIFQSMTSMYSVRPQEEHYGCFVDLMSRAGHLEEGYKFIKLS 715

Query: 506 CLSDASG--------------------LAGKLLE--GMGPNIWRALLSGCVLHVGRFQDA 543
            L+D S                     ++ +LLE     P  + AL+S      G++  +
Sbjct: 716 TLNDKSSVLCALLSACRTYGNTMLGQVISNELLEVGQQNPGTY-ALISEVFAQKGQWNKS 774

Query: 544 EALRSGSQKKGIIKIPGISFLNSTSR 569
            ++R+ +++ G+ K+PG S + S  +
Sbjct: 775 ASIRNRAKENGLRKLPGSSLIESVEQ 800



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 98/362 (27%), Positives = 182/362 (50%), Gaps = 7/362 (1%)

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           F+G  N  L   N+++         ++A+LL+   +   +  +  T+   ++ C+ L + 
Sbjct: 101 FQGFLNNDLAEWNSVMVDIFRAGYPEEAILLYRGLKLRQIDLDEKTVTFGLKSCIELRNL 160

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
            L + +H  ++KLGL  D  V +S++ +YS L  +D + + F E+  KD++S+T M+  +
Sbjct: 161 LLGKGMHADSVKLGLSRDKFVGSSLVGLYSKLARMDDSQKAFEEILDKDIVSYTSMITGY 220

Query: 227 VDF--EYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG--GL 282
            +     + +A KI  +M  S +  + V L++L+ V   LG ++ GK +H   +    G+
Sbjct: 221 SENMDSTSWNAFKIVSDMSWSNLEVNRVTLVSLLQVAGNLGAIREGKSVHCYSIRRDIGI 280

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
             E+ L  S++ MY +CG    + +V    + +S+ SW A+++G V+ G +  A++    
Sbjct: 281 SDEV-LETSLVHMYMQCGACQLASAVLKN-SAQSVASWNAMLAGLVRTGQSGNAIHYLYI 338

Query: 343 MRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
           M  E     DS+T  ++++A  EL        +H        P    +   LI  Y KC 
Sbjct: 339 MLYEHKVVPDSVTYANVISACAELCNSGYAASVHAYIIRRSIPLDVVLATALIKVYLKCT 398

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
            + ++  +F ++  ++D VS+N +IYGY  NG    A+AL  +M      P+  T LS+L
Sbjct: 399 RITISKRLFNQL-VVKDTVSYNAMIYGYLQNGMVNEAIALLKEMVTECVAPNFVTILSLL 457

Query: 463 NA 464
            A
Sbjct: 458 AA 459



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 115/488 (23%), Positives = 220/488 (45%), Gaps = 30/488 (6%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           S++L  Y   G + +    F      ++  W+ V+      G+ E+++  +  + L  + 
Sbjct: 82  SEILICYASLGVLCKTRLCFQGFLNNDLAEWNSVMVDIFRAGYPEEAILLYRGLKLRQID 141

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------L 106
            +  T+   L +   L+NL L + +H   VK GL  D                       
Sbjct: 142 LDEKTVTFGLKSCIELRNLLLGKGMHADSVKLGLSRDKFVGSSLVGLYSKLARMDDSQKA 201

Query: 107 FEGLKNPYLVSCNAIVAGFINN--KLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
           FE + +  +VS  +++ G+  N       A  + +    S L  N VT++++++    LG
Sbjct: 202 FEEILDKDIVSYTSMITGYSENMDSTSWNAFKIVSDMSWSNLEVNRVTLVSLLQVAGNLG 261

Query: 165 SRALCELIHGLTIKLGL-ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
           +    + +H  +I+  + I D  +  S++ MY        A  + +    + V SW  M+
Sbjct: 262 AIREGKSVHCYSIRRDIGISDEVLETSLVHMYMQCGACQLASAVLKN-SAQSVASWNAML 320

Query: 224 GLFVDFEYAGDALK-IFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL 282
              V    +G+A+  ++  + + +++ D+V   N+IS  A L +      +HA ++   +
Sbjct: 321 AGLVRTGQSGNAIHYLYIMLYEHKVVPDSVTYANVISACAELCNSGYAASVHAYIIRRSI 380

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
             ++ L+ ++I +Y KC  +  S+ +FNQ+  K  VS+ A+I GY+QNG   EA+    +
Sbjct: 381 PLDVVLATALIKVYLKCTRITISKRLFNQLVVKDTVSYNAMIYGYLQNGMVNEAIALLKE 440

Query: 343 MRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
           M  E   + + +T++S+L A  +         +HG +   GF     + N +I  YS CG
Sbjct: 441 MVTECV-APNFVTILSLLAAIADHKDFARGRWIHGFSIRHGFCSNVDIANQIIRMYSGCG 499

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH-KMTETGEVPDSSTYLSI 461
            +  A IVF      ++++SW T++ G    GHG   + L+   M +    PDS   ++ 
Sbjct: 500 KIASARIVFASFEN-KNLISWTTMMMGCLFCGHGGQTVELFQLLMQQHDNKPDSIAVMTA 558

Query: 462 LNACGHAG 469
           + A    G
Sbjct: 559 IQAVSEFG 566



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 150/309 (48%), Gaps = 13/309 (4%)

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           +H   + LGL  DV + + +L  Y+ L  L      F+     D+  W  +M       Y
Sbjct: 65  LHARVLTLGLGRDVILGSEILICYASLGVLCKTRLCFQGFLNNDLAEWNSVMVDIFRAGY 124

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
             +A+ ++R ++  +I  D   +   +     L +L  GK +HA  V  GL  +  + +S
Sbjct: 125 PEEAILLYRGLKLRQIDLDEKTVTFGLKSCIELRNLLLGKGMHADSVKLGLSRDKFVGSS 184

Query: 292 IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDS- 350
           ++ +YSK   +D S+  F +I +K +VS+T++I+GY +N     + N F K+  + + S 
Sbjct: 185 LVGLYSKLARMDDSQKAFEEILDKDIVSYTSMITGYSEN-MDSTSWNAF-KIVSDMSWSN 242

Query: 351 --VDSITLVSILTASGELAALEICLQLH--GIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
             V+ +TLVS+L  +G L A+     +H   I  + G      ++  L+  Y +CG   L
Sbjct: 243 LEVNRVTLVSLLQVAGNLGAIREGKSVHCYSIRRDIGISD-EVLETSLVHMYMQCGACQL 301

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALA-LYHKMTETGEVPDSSTYLSILNAC 465
           A  V +     + V SWN ++ G    G    A+  LY  + E   VPDS TY ++++AC
Sbjct: 302 ASAVLKNSA--QSVASWNAMLAGLVRTGQSGNAIHYLYIMLYEHKVVPDSVTYANVISAC 359

Query: 466 GHAGLTNDG 474
             A L N G
Sbjct: 360 --AELCNSG 366



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/291 (21%), Positives = 130/291 (44%), Gaps = 23/291 (7%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D   ++ L+  Y K  +I  ++ LF+++  K+ VS++ +I+GY  NG   +++     M
Sbjct: 382 LDVVLATALIKVYLKCTRITISKRLFNQLVVKDTVSYNAMIYGYLQNGMVNEAIALLKEM 441

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
           +   + PN  T++ +L A A  ++    R IHG  ++ G  S+                 
Sbjct: 442 VTECVAPNFVTILSLLAAIADHKDFARGRWIHGFSIRHGFCSNVDIANQIIRMYSGCGKI 501

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFF-RGSGLVPNAVTMLTVIRG 159
                +F   +N  L+S   ++ G +      Q V LF    +     P+++ ++T I+ 
Sbjct: 502 ASARIVFASFENKNLISWTTMMMGCLFCGHGGQTVELFQLLMQQHDNKPDSIAVMTAIQA 561

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
               G     + +H    +  L  D    NS++  Y+    LD ++ +F  +E +D+ SW
Sbjct: 562 VSEFGHLKGVKQVHCFVYRALLEKDTKTMNSLITAYAKCGRLDLSVSLFLSLEHRDLDSW 621

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG 270
             M+  +    +    L++F+ M +  I  D +   +++S  +  G +K G
Sbjct: 622 NSMISAYGMHGFYTKVLEMFKLMEEGNINPDGLTFSSVLSACSHAGLIKEG 672



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 125/273 (45%), Gaps = 10/273 (3%)

Query: 266 DLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIIS 325
           D++  K+LHA+V+  GL  ++ L + I+  Y+  G L  +R  F       L  W +++ 
Sbjct: 58  DVRSLKKLHARVLTLGLGRDVILGSEILICYASLGVLCKTRLCFQGFLNNDLAEWNSVMV 117

Query: 326 GYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFP 385
              + G   EA+  +  ++  + D +D  T+   L +  EL  L +   +H  + + G  
Sbjct: 118 DIFRAGYPEEAILLYRGLKLRQID-LDEKTVTFGLKSCIELRNLLLGKGMHADSVKLGLS 176

Query: 386 RYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGET--ALALY 443
           R + V + L+  YSK   +D +   FEE+   +D+VS+ ++I GY  N    +  A  + 
Sbjct: 177 RDKFVGSSLVGLYSKLARMDDSQKAFEEI-LDKDIVSYTSMITGYSENMDSTSWNAFKIV 235

Query: 444 HKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLAR 503
             M+ +    +  T +S+L   G+ G   +G  +    I  +     +     +V +  +
Sbjct: 236 SDMSWSNLEVNRVTLVSLLQVAGNLGAIREGKSVHCYSIRRDIGISDEVLETSLVHMYMQ 295

Query: 504 AGCLSDASGLAGKLLEGMGPNI--WRALLSGCV 534
            G    A  LA  +L+    ++  W A+L+G V
Sbjct: 296 CG----ACQLASAVLKNSAQSVASWNAMLAGLV 324


>gi|15223562|ref|NP_176050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173051|sp|Q9FXA9.1|PPR83_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g56570
 gi|9954755|gb|AAG09106.1|AC009323_17 Hypothetical protein [Arabidopsis thaliana]
 gi|332195289|gb|AEE33410.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 611

 Score =  246 bits (628), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 139/435 (31%), Positives = 241/435 (55%), Gaps = 9/435 (2%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           LF+ + +  +V+  A++ G+ ++    +A   F+     G  PN  T+ +V++ C  +  
Sbjct: 67  LFDEMPDRDVVAWTAMITGYASSNYNARAWECFHEMVKQGTSPNEFTLSSVLKSCRNMKV 126

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMY-SCLMDLDAAIQIFREMECKDVISWTRMMG 224
            A   L+HG+ +KLG+   + V+N++++MY +C + ++AA  IFR+++ K+ ++WT    
Sbjct: 127 LAYGALVHGVVVKLGMEGSLYVDNAMMNMYATCSVTMEAACLIFRDIKVKNDVTWTT--- 183

Query: 225 LFVDFEYAGDA---LKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           L   F + GD    LK++++M           +   +  +A +  +  GKQ+HA V+  G
Sbjct: 184 LITGFTHLGDGIGGLKMYKQMLLENAEVTPYCITIAVRASASIDSVTTGKQIHASVIKRG 243

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
            QS L + NSI+ +Y +CG L  ++  F+++ +K L++W  +IS  ++   + EAL  F 
Sbjct: 244 FQSNLPVMNSILDLYCRCGYLSEAKHYFHEMEDKDLITWNTLISE-LERSDSSEALLMFQ 302

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +  + +    +  T  S++ A   +AAL    QLHG  F  GF +   + N LI  Y+KC
Sbjct: 303 RF-ESQGFVPNCYTFTSLVAACANIAALNCGQQLHGRIFRRGFNKNVELANALIDMYAKC 361

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           GN+  +  VF E+   R++VSW +++ GYG +G+G  A+ L+ KM  +G  PD   ++++
Sbjct: 362 GNIPDSQRVFGEIVDRRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMAV 421

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L+AC HAGL   GL  FN M  E  + P ++ Y CVVDLL RAG + +A  L  ++    
Sbjct: 422 LSACRHAGLVEKGLKYFNVMESEYGINPDRDIYNCVVDLLGRAGKIGEAYELVERMPFKP 481

Query: 522 GPNIWRALLSGCVLH 536
             + W A+L  C  H
Sbjct: 482 DESTWGAILGACKAH 496



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 126/462 (27%), Positives = 227/462 (49%), Gaps = 48/462 (10%)

Query: 5   PYNSSK-------LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMK 57
           PY   K       L+ +YF+ G ++EA +LFDE+P+++VV+W+ +I GY+ + ++ ++ +
Sbjct: 38  PYKPKKHHILATNLIVSYFEKGLVEEARSLFDEMPDRDVVAWTAMITGYASSNYNARAWE 97

Query: 58  AFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------- 106
            F  M+  G  PN FT+  VL +   ++ L     +HG++VK G+E  L           
Sbjct: 98  CFHEMVKQGTSPNEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNAMMNMYA 157

Query: 107 ------------FEGLKNPYLVSCNAIVAGFIN-------NKLFQQAVLLFNFFRGSGLV 147
                       F  +K    V+   ++ GF +        K+++Q +L       + + 
Sbjct: 158 TCSVTMEAACLIFRDIKVKNDVTWTTLITGFTHLGDGIGGLKMYKQMLL-----ENAEVT 212

Query: 148 PNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQI 207
           P  +T+   +R   ++ S    + IH   IK G   ++ V NS+LD+Y     L  A   
Sbjct: 213 PYCITI--AVRASASIDSVTTGKQIHASVIKRGFQSNLPVMNSILDLYCRCGYLSEAKHY 270

Query: 208 FREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDL 267
           F EME KD+I+W  ++   ++   + +AL +F+       + +     +L++  A +  L
Sbjct: 271 FHEMEDKDLITWNTLISE-LERSDSSEALLMFQRFESQGFVPNCYTFTSLVAACANIAAL 329

Query: 268 KRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE-KSLVSWTAIISG 326
             G+QLH ++   G    + L+N++I MY+KCG++  S+ VF +I + ++LVSWT+++ G
Sbjct: 330 NCGQQLHGRIFRRGFNKNVELANALIDMYAKCGNIPDSQRVFGEIVDRRNLVSWTSMMIG 389

Query: 327 YVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGI-AFEAGFP 385
           Y  +G   EA+  F KM        D I  +++L+A      +E  L+   +   E G  
Sbjct: 390 YGSHGYGAEAVELFDKMVSSGIRP-DRIVFMAVLSACRHAGLVEKGLKYFNVMESEYGIN 448

Query: 386 RYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
             R + NC++    + G +  AY + E M F  D  +W  I+
Sbjct: 449 PDRDIYNCVVDLLGRAGKIGEAYELVERMPFKPDESTWGAIL 490



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 126/261 (48%), Gaps = 11/261 (4%)

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
           L+ ++I  Y + G ++ +RS+F+++ ++ +V+WTA+I+GY  +     A   F +M ++ 
Sbjct: 47  LATNLIVSYFEKGLVEEARSLFDEMPDRDVVAWTAMITGYASSNYNARAWECFHEMVKQG 106

Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG-NVDL 406
           T S +  TL S+L +   +  L     +HG+  + G      V N +++ Y+ C   ++ 
Sbjct: 107 T-SPNEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNAMMNMYATCSVTMEA 165

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM-TETGEVPDSSTYLSILNAC 465
           A ++F ++    D V+W T+I G+   G G   L +Y +M  E  EV      +++  + 
Sbjct: 166 ACLIFRDIKVKND-VTWTTLITGFTHLGDGIGGLKMYKQMLLENAEVTPYCITIAVRASA 224

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI 525
               +T  G  I   +I+    + +      ++DL  R G LS+A     + +E      
Sbjct: 225 SIDSVTT-GKQIHASVIKRG-FQSNLPVMNSILDLYCRCGYLSEAKHYFHE-MEDKDLIT 281

Query: 526 WRALLSGCVLHVGRFQDAEAL 546
           W  L+S     + R   +EAL
Sbjct: 282 WNTLIS----ELERSDSSEAL 298


>gi|255562850|ref|XP_002522430.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538315|gb|EEF39922.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 556

 Score =  246 bits (628), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 154/489 (31%), Positives = 253/489 (51%), Gaps = 27/489 (5%)

Query: 17  KSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHE-KSMKAFSHM-MLSGLLPNSFTM 74
           K+G +++A  +FDE+P ++ +SW+ +I GY +N     +++  FS M ++ GL  + F +
Sbjct: 60  KTGCLQDARQMFDEMPHRDEISWTTIISGY-VNAIDTTEALTLFSKMWVVPGLRMDPFIL 118

Query: 75  VGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPYL----------------- 115
              L       N     S+HG  VK      +F G  L + Y+                 
Sbjct: 119 SLALKICGLSLNESYGESLHGYSVKSDFVDSVFVGSALVDMYMKFDKIQQGCQIFHAMPI 178

Query: 116 ---VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELI 172
              VS  AI+ GF++    ++ ++ F+    S +V ++ T    ++ C  LG+      I
Sbjct: 179 RNVVSWTAIITGFVHAGYSKEGLVYFSQMWRSKVVCDSYTFAIALKACANLGALDHGRQI 238

Query: 173 HGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYA 232
           H   +K  L     V N++  MY+    LD   ++F +M  ++V+SWT ++  +      
Sbjct: 239 HCQALKRSLEASSFVANTLATMYNKCGKLDYGSRLFEKMTIRNVVSWTMIITTYTQSGQE 298

Query: 233 GDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSI 292
            +AL+ F  M++  +  +      +IS  A LG  + G+QLH  ++  GL + L ++NS+
Sbjct: 299 ENALRAFIRMQEIGVSPNDFTFAAVISGCANLGKTEWGEQLHGHMLCLGLMTFLSVANSV 358

Query: 293 IAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVD 352
           I +YSKCG L S+  VF ++T + +VSW+ II+GY Q GCA EA     +MR+E     +
Sbjct: 359 ITLYSKCGQLKSASMVFKELTRRDVVSWSTIIAGYSQGGCAEEAFEYLSRMRREGPKP-N 417

Query: 353 SITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFE 412
            +TL S+L+  G +A LE   QLH  A   G  +   +Q+ LI+ YSKCG++  A  +F+
Sbjct: 418 ELTLASVLSVCGNMAILEQGKQLHAHALHVGLEQTAMIQSALINMYSKCGSIKEASKIFD 477

Query: 413 EMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTN 472
           E     D+VSW  +I GY  +G  + A+ L+ K+   G  PD  T++ +L AC HAGL +
Sbjct: 478 EAEN-NDIVSWTAMINGYAEHGCRQEAIDLFEKIPRIGLKPDPVTFIGVLTACSHAGLVD 536

Query: 473 DGLVIFNQM 481
            G   FN M
Sbjct: 537 LGFHYFNSM 545



 Score =  202 bits (513), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 137/474 (28%), Positives = 242/474 (51%), Gaps = 14/474 (2%)

Query: 97  MVKFGLESD---LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFN-FFRGSGLVPNAVT 152
           +VK G   D   +F+ + +   +S   I++G++N     +A+ LF+  +   GL  +   
Sbjct: 58  LVKTGCLQDARQMFDEMPHRDEISWTTIISGYVNAIDTTEALTLFSKMWVVPGLRMDPFI 117

Query: 153 MLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME 212
           +   ++ C    + +  E +HG ++K   +  V V ++++DMY     +    QIF  M 
Sbjct: 118 LSLALKICGLSLNESYGESLHGYSVKSDFVDSVFVGSALVDMYMKFDKIQQGCQIFHAMP 177

Query: 213 CKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQ 272
            ++V+SWT ++  FV   Y+ + L  F +M +S+++CD+      +   A LG L  G+Q
Sbjct: 178 IRNVVSWTAIITGFVHAGYSKEGLVYFSQMWRSKVVCDSYTFAIALKACANLGALDHGRQ 237

Query: 273 LHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC 332
           +H Q +   L++   ++N++  MY+KCG LD    +F ++T +++VSWT II+ Y Q+G 
Sbjct: 238 IHCQALKRSLEASSFVANTLATMYNKCGKLDYGSRLFEKMTIRNVVSWTMIITTYTQSGQ 297

Query: 333 AREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN 392
              AL  FI+M QE   S +  T  ++++    L   E   QLHG     G   + SV N
Sbjct: 298 EENALRAFIRM-QEIGVSPNDFTFAAVISGCANLGKTEWGEQLHGHMLCLGLMTFLSVAN 356

Query: 393 CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV 452
            +I+ YSKCG +  A +VF+E+   RDVVSW+TII GY   G  E A     +M   G  
Sbjct: 357 SVITLYSKCGQLKSASMVFKELT-RRDVVSWSTIIAGYSQGGCAEEAFEYLSRMRREGPK 415

Query: 453 PDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASG 512
           P+  T  S+L+ CG+  +   G  +    +    ++ +      ++++ ++ G + +AS 
Sbjct: 416 PNELTLASVLSVCGNMAILEQGKQLHAHALHVG-LEQTAMIQSALINMYSKCGSIKEASK 474

Query: 513 LAGKLLEGMGPNI--WRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFL 564
           +     E    +I  W A+++G   H  R Q+A  L     + G+   P ++F+
Sbjct: 475 I---FDEAENNDIVSWTAMINGYAEHGCR-QEAIDLFEKIPRIGLKPDP-VTFI 523



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 116/376 (30%), Positives = 195/376 (51%), Gaps = 23/376 (6%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           S L+  Y K  KI++   +F  +P +NVVSW+ +I G+   G+ ++ +  FS M  S ++
Sbjct: 154 SALVDMYMKFDKIQQGCQIFHAMPIRNVVSWTAIITGFVHAGYSKEGLVYFSQMWRSKVV 213

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE----------------------SDL 106
            +S+T    L A A L  L+  R IH   +K  LE                      S L
Sbjct: 214 CDSYTFAIALKACANLGALDHGRQIHCQALKRSLEASSFVANTLATMYNKCGKLDYGSRL 273

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           FE +    +VS   I+  +  +   + A+  F   +  G+ PN  T   VI GC  LG  
Sbjct: 274 FEKMTIRNVVSWTMIITTYTQSGQEENALRAFIRMQEIGVSPNDFTFAAVISGCANLGKT 333

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
              E +HG  + LGL+  +SV NSV+ +YS    L +A  +F+E+  +DV+SW+ ++  +
Sbjct: 334 EWGEQLHGHMLCLGLMTFLSVANSVITLYSKCGQLKSASMVFKELTRRDVVSWSTIIAGY 393

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
                A +A +    MR+     + + L +++SV   +  L++GKQLHA  +  GL+   
Sbjct: 394 SQGGCAEEAFEYLSRMRREGPKPNELTLASVLSVCGNMAILEQGKQLHAHALHVGLEQTA 453

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            + +++I MYSKCG +  +  +F++     +VSWTA+I+GY ++GC +EA++ F K+ + 
Sbjct: 454 MIQSALINMYSKCGSIKEASKIFDEAENNDIVSWTAMINGYAEHGCRQEAIDLFEKIPRI 513

Query: 347 KTDSVDSITLVSILTA 362
                D +T + +LTA
Sbjct: 514 GLKP-DPVTFIGVLTA 528



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 131/274 (47%), Gaps = 22/274 (8%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ L + Y K GK+     LF+++  +NVVSW+++I  Y+ +G  E +++AF  M   G+
Sbjct: 254 ANTLATMYNKCGKLDYGSRLFEKMTIRNVVSWTMIITTYTQSGQEENALRAFIRMQEIGV 313

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL----------------------ESD 105
            PN FT   V+   A L   E    +HG M+  GL                       S 
Sbjct: 314 SPNDFTFAAVISGCANLGKTEWGEQLHGHMLCLGLMTFLSVANSVITLYSKCGQLKSASM 373

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F+ L    +VS + I+AG+      ++A    +  R  G  PN +T+ +V+  C  +  
Sbjct: 374 VFKELTRRDVVSWSTIIAGYSQGGCAEEAFEYLSRMRREGPKPNELTLASVLSVCGNMAI 433

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
               + +H   + +GL     + +++++MYS    +  A +IF E E  D++SWT M+  
Sbjct: 434 LEQGKQLHAHALHVGLEQTAMIQSALINMYSKCGSIKEASKIFDEAENNDIVSWTAMING 493

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLIS 259
           + +     +A+ +F ++ +  +  D V  + +++
Sbjct: 494 YAEHGCRQEAIDLFEKIPRIGLKPDPVTFIGVLT 527



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 88/196 (44%), Gaps = 1/196 (0%)

Query: 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD 349
           NS +    K G L  +R +F+++  +  +SWT IISGYV      EAL  F KM      
Sbjct: 52  NSKLKALVKTGCLQDARQMFDEMPHRDEISWTTIISGYVNAIDTTEALTLFSKMWVVPGL 111

Query: 350 SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYI 409
            +D   L   L   G          LHG + ++ F     V + L+  Y K   +     
Sbjct: 112 RMDPFILSLALKICGLSLNESYGESLHGYSVKSDFVDSVFVGSALVDMYMKFDKIQQGCQ 171

Query: 410 VFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAG 469
           +F  M  +R+VVSW  II G+   G+ +  L  + +M  +  V DS T+   L AC + G
Sbjct: 172 IFHAMP-IRNVVSWTAIITGFVHAGYSKEGLVYFSQMWRSKVVCDSYTFAIALKACANLG 230

Query: 470 LTNDGLVIFNQMIEEN 485
             + G  I  Q ++ +
Sbjct: 231 ALDHGRQIHCQALKRS 246


>gi|242035425|ref|XP_002465107.1| hypothetical protein SORBIDRAFT_01g032140 [Sorghum bicolor]
 gi|241918961|gb|EER92105.1| hypothetical protein SORBIDRAFT_01g032140 [Sorghum bicolor]
          Length = 805

 Score =  246 bits (627), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 172/581 (29%), Positives = 292/581 (50%), Gaps = 32/581 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAF---S 60
           D +  S L+  Y K  ++ +++  F+EI +K++VS++ +I GYS N     S  AF   S
Sbjct: 178 DKFVGSSLVGLYSKLARMGDSQKAFEEILDKDIVSYTSMITGYSEN-MDSTSWNAFEIAS 236

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE-SDLFEG---------- 109
            M  S L  N  T+V +L  A  L  +   +S+H    + G+  SD   G          
Sbjct: 237 DMSQSNLEVNRVTLVSLLQVAGNLGAIREGKSVHCYSTRRGIGVSDEVLGTSLVHMYMQC 296

Query: 110 ---------LKN--PYLVSCNAIVAGFINNKLFQQAVLLFN-FFRGSGLVPNAVTMLTVI 157
                    LKN    + S NA++AG +       A+  F+       +VP++VT   +I
Sbjct: 297 GAYQLASASLKNLVQSVASWNAMLAGLVRTGQSGNAIHHFSVMLHEHKVVPDSVTYANLI 356

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
             C  L +      +H   I+  + LDV +  +++++Y     + ++  +F ++  KD++
Sbjct: 357 SACAELCNSGYAASVHAYLIRRSIPLDVVLATALIEVYMKCTRIMSSKHLFDQLVVKDLV 416

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           S+  M+  ++      +A+ + +EM    +  + V +L+L++  A   D  RG+ +H   
Sbjct: 417 SYNTMIYGYLQNGMVNEAIALLKEMVAECVAPNFVTILSLLAAIADHKDFVRGRWIHGFS 476

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           +  G  S + ++N II MYS CG + S+R++F  + +K+L+SWT ++ G +  G   E +
Sbjct: 477 IRHGFFSNVDIANQIIRMYSGCGKITSARTIFASLEKKNLISWTVMMMGCLFCGHGGETV 536

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
             F  + Q+  +  DS+T+++ + A  EL  L+   Q+H   + A   +     N LI++
Sbjct: 537 ELFQLLMQQHGNKPDSVTVMTAIQAVSELGHLKGVKQIHCFVYRALLEKDTKTINSLITA 596

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           Y+KCG +DL+  +F  +   RD+ SWN++I  YG++G     L ++  M E    PD  T
Sbjct: 597 YAKCGRLDLSVGLFLSLEH-RDLDSWNSMISAYGMHGFYTKVLEMFKLMEEGNINPDGLT 655

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL 517
           + S+L+AC HAGL  +GL IF  M     V P +EHYGC+VDLL+RAG L +   L    
Sbjct: 656 FSSVLSACSHAGLIKEGLHIFQSMTSIYSVLPQEEHYGCIVDLLSRAGHLEEGYKLIKLS 715

Query: 518 LEGMGPNIWRALLSGCVLH----VGRFQDAEALRSGSQKKG 554
                 ++  ALLS C  +    +G+    E L  G Q  G
Sbjct: 716 TLNDKSSVLCALLSACRTYGNTMLGQVISNELLELGQQNPG 756



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/361 (26%), Positives = 181/361 (50%), Gaps = 5/361 (1%)

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           F G  N  L   N+++         ++A+LL+   +   +  +  T+   ++ C  L + 
Sbjct: 101 FHGFLNDDLAQWNSVIVDIFRAGYPEEAILLYRGLKLRQIGLDEKTVTFGLKSCTELRNL 160

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
            L + +H  ++KLGL  D  V +S++ +YS L  +  + + F E+  KD++S+T M+  +
Sbjct: 161 LLGKGMHADSLKLGLNRDKFVGSSLVGLYSKLARMGDSQKAFEEILDKDIVSYTSMITGY 220

Query: 227 VDF--EYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ- 283
            +     + +A +I  +M +S +  + V L++L+ V   LG ++ GK +H      G+  
Sbjct: 221 SENMDSTSWNAFEIASDMSQSNLEVNRVTLVSLLQVAGNLGAIREGKSVHCYSTRRGIGV 280

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
           S+  L  S++ MY +CG    + +    + + S+ SW A+++G V+ G +  A++ F  M
Sbjct: 281 SDEVLGTSLVHMYMQCGAYQLASASLKNLVQ-SVASWNAMLAGLVRTGQSGNAIHHFSVM 339

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
             E     DS+T  ++++A  EL        +H        P    +   LI  Y KC  
Sbjct: 340 LHEHKVVPDSVTYANLISACAELCNSGYAASVHAYLIRRSIPLDVVLATALIEVYMKCTR 399

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           +  +  +F+++  ++D+VS+NT+IYGY  NG    A+AL  +M      P+  T LS+L 
Sbjct: 400 IMSSKHLFDQL-VVKDLVSYNTMIYGYLQNGMVNEAIALLKEMVAECVAPNFVTILSLLA 458

Query: 464 A 464
           A
Sbjct: 459 A 459



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 129/559 (23%), Positives = 251/559 (44%), Gaps = 40/559 (7%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           S++L  Y   G + +    F      ++  W+ VI      G+ E+++  +  + L  + 
Sbjct: 82  SEILICYASLGVLCKTRLCFHGFLNDDLAQWNSVIVDIFRAGYPEEAILLYRGLKLRQIG 141

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------L 106
            +  T+   L +   L+NL L + +H   +K GL  D                       
Sbjct: 142 LDEKTVTFGLKSCTELRNLLLGKGMHADSLKLGLNRDKFVGSSLVGLYSKLARMGDSQKA 201

Query: 107 FEGLKNPYLVSCNAIVAGFINN--KLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
           FE + +  +VS  +++ G+  N       A  + +    S L  N VT++++++    LG
Sbjct: 202 FEEILDKDIVSYTSMITGYSENMDSTSWNAFEIASDMSQSNLEVNRVTLVSLLQVAGNLG 261

Query: 165 SRALCELIHGLTIKLGL-ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
           +    + +H  + + G+ + D  +  S++ MY        A    + +  + V SW  M+
Sbjct: 262 AIREGKSVHCYSTRRGIGVSDEVLGTSLVHMYMQCGAYQLASASLKNL-VQSVASWNAML 320

Query: 224 GLFVDFEYAGDALKIFREM-RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL 282
              V    +G+A+  F  M  + +++ D+V   NLIS  A L +      +HA ++   +
Sbjct: 321 AGLVRTGQSGNAIHHFSVMLHEHKVVPDSVTYANLISACAELCNSGYAASVHAYLIRRSI 380

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
             ++ L+ ++I +Y KC  + SS+ +F+Q+  K LVS+  +I GY+QNG   EA+    +
Sbjct: 381 PLDVVLATALIEVYMKCTRIMSSKHLFDQLVVKDLVSYNTMIYGYLQNGMVNEAIALLKE 440

Query: 343 MRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
           M  E   + + +T++S+L A  +         +HG +   GF     + N +I  YS CG
Sbjct: 441 MVAECV-APNFVTILSLLAAIADHKDFVRGRWIHGFSIRHGFFSNVDIANQIIRMYSGCG 499

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH-KMTETGEVPDSSTYLSI 461
            +  A  +F  +   ++++SW  ++ G    GHG   + L+   M + G  PDS T ++ 
Sbjct: 500 KITSARTIFASLE-KKNLISWTVMMMGCLFCGHGGETVELFQLLMQQHGNKPDSVTVMTA 558

Query: 462 LNAC---GH-AGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL 517
           + A    GH  G+      ++  ++E++      +    ++   A+ G L  + GL    
Sbjct: 559 IQAVSELGHLKGVKQIHCFVYRALLEKDT-----KTINSLITAYAKCGRLDLSVGLFLS- 612

Query: 518 LEGMGPNIWRALLSGCVLH 536
           LE    + W +++S   +H
Sbjct: 613 LEHRDLDSWNSMISAYGMH 631



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 143/307 (46%), Gaps = 9/307 (2%)

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           +H   + LGL  DV + + +L  Y+ L  L      F      D+  W  ++       Y
Sbjct: 65  LHARVLTLGLGRDVILGSEILICYASLGVLCKTRLCFHGFLNDDLAQWNSVIVDIFRAGY 124

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
             +A+ ++R ++  +I  D   +   +     L +L  GK +HA  +  GL  +  + +S
Sbjct: 125 PEEAILLYRGLKLRQIGLDEKTVTFGLKSCTELRNLLLGKGMHADSLKLGLNRDKFVGSS 184

Query: 292 IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN--GCAREALNQFIKMRQEKTD 349
           ++ +YSK   +  S+  F +I +K +VS+T++I+GY +N    +  A      M Q   +
Sbjct: 185 LVGLYSKLARMGDSQKAFEEILDKDIVSYTSMITGYSENMDSTSWNAFEIASDMSQSNLE 244

Query: 350 SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV-QNCLISSYSKCGNVDLAY 408
            V+ +TLVS+L  +G L A+     +H  +   G      V    L+  Y +CG   LA 
Sbjct: 245 -VNRVTLVSLLQVAGNLGAIREGKSVHCYSTRRGIGVSDEVLGTSLVHMYMQCGAYQLAS 303

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM-TETGEVPDSSTYLSILNACGH 467
              + +  ++ V SWN ++ G    G    A+  +  M  E   VPDS TY ++++AC  
Sbjct: 304 ASLKNL--VQSVASWNAMLAGLVRTGQSGNAIHHFSVMLHEHKVVPDSVTYANLISAC-- 359

Query: 468 AGLTNDG 474
           A L N G
Sbjct: 360 AELCNSG 366



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 135/291 (46%), Gaps = 23/291 (7%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D   ++ L+  Y K  +I  +++LFD++  K++VS++ +I+GY  NG   +++     M
Sbjct: 382 LDVVLATALIEVYMKCTRIMSSKHLFDQLVVKDLVSYNTMIYGYLQNGMVNEAIALLKEM 441

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
           +   + PN  T++ +L A A  ++    R IHG  ++ G  S+                 
Sbjct: 442 VAECVAPNFVTILSLLAAIADHKDFVRGRWIHGFSIRHGFFSNVDIANQIIRMYSGCGKI 501

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFF-RGSGLVPNAVTMLTVIRG 159
                +F  L+   L+S   ++ G +      + V LF    +  G  P++VT++T I+ 
Sbjct: 502 TSARTIFASLEKKNLISWTVMMMGCLFCGHGGETVELFQLLMQQHGNKPDSVTVMTAIQA 561

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
              LG     + IH    +  L  D    NS++  Y+    LD ++ +F  +E +D+ SW
Sbjct: 562 VSELGHLKGVKQIHCFVYRALLEKDTKTINSLITAYAKCGRLDLSVGLFLSLEHRDLDSW 621

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG 270
             M+  +    +    L++F+ M +  I  D +   +++S  +  G +K G
Sbjct: 622 NSMISAYGMHGFYTKVLEMFKLMEEGNINPDGLTFSSVLSACSHAGLIKEG 672



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 126/274 (45%), Gaps = 12/274 (4%)

Query: 266 DLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIIS 325
           D++  K+LHA+V+  GL  ++ L + I+  Y+  G L  +R  F+      L  W ++I 
Sbjct: 58  DVRSLKKLHARVLTLGLGRDVILGSEILICYASLGVLCKTRLCFHGFLNDDLAQWNSVIV 117

Query: 326 GYVQNGCAREA--LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG 383
              + G   EA  L + +K+RQ     +D  T+   L +  EL  L +   +H  + + G
Sbjct: 118 DIFRAGYPEEAILLYRGLKLRQ---IGLDEKTVTFGLKSCTELRNLLLGKGMHADSLKLG 174

Query: 384 FPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGET--ALA 441
             R + V + L+  YSK   +  +   FEE+   +D+VS+ ++I GY  N    +  A  
Sbjct: 175 LNRDKFVGSSLVGLYSKLARMGDSQKAFEEI-LDKDIVSYTSMITGYSENMDSTSWNAFE 233

Query: 442 LYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGC-VVDL 500
           +   M+++    +  T +S+L   G+ G   +G  +         +  S E  G  +V +
Sbjct: 234 IASDMSQSNLEVNRVTLVSLLQVAGNLGAIREGKSVHCYSTRRG-IGVSDEVLGTSLVHM 292

Query: 501 LARAGCLSDASGLAGKLLEGMGPNIWRALLSGCV 534
             + G    AS     L++ +    W A+L+G V
Sbjct: 293 YMQCGAYQLASASLKNLVQSVAS--WNAMLAGLV 324


>gi|326504484|dbj|BAJ91074.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 823

 Score =  246 bits (627), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 157/565 (27%), Positives = 291/565 (51%), Gaps = 47/565 (8%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPE-KNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           D   ++ LL+ Y K G ++ A  +FD +   +++VSW+ +    + NG  ++++     M
Sbjct: 78  DALVANSLLTMYSKCGHVRAARRVFDGMRGLRDLVSWTAMAFCLTRNGAEQEALVLLGEM 137

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES--------------DLFE 108
           + SGL PN+FT+     AA      EL RS  G ++ F +++              D+F 
Sbjct: 138 LESGLRPNAFTLCA---AAHACFPGELFRSSGGTVLGFAIKTGFWGTDVSVGCALIDMFA 194

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRG---------------SGLVPNAVTM 153
             +N  LV+   +  G +   +    +++  + +G                G  P+  TM
Sbjct: 195 --RNGDLVAARKVFNGLVERTVVVWTLMITRYVQGGCAGKAVELFLGMLEDGFEPDGYTM 252

Query: 154 LTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLM---DLDAAIQIFRE 210
            +++  C   GS  L + +H L ++LGL+ D  V+  ++DMY+ L     ++ A ++F+ 
Sbjct: 253 SSMVSACAEQGSAGLGQQLHSLVLRLGLVSDTCVSCGLVDMYTKLQMEQSMECARKVFKR 312

Query: 211 MECKDVISWTRMMGLFVDFE-YAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKR 269
           M   +V+SWT ++  +V       +A+++  EM    I  + +   +L+   A L D   
Sbjct: 313 MPTHNVMSWTALISGYVQCGGQENNAVELLCEMLNESIEPNHLTYSSLLKACANLSDQDS 372

Query: 270 GKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQ 329
           G+Q+HA+V+   + +   + N++++MY++ G ++ +R  F+Q+ E++L+S ++ I    +
Sbjct: 373 GRQIHARVMKTSIGNVNVVGNALVSMYAESGCMEEARKAFDQLYERNLLSTSSDIG---E 429

Query: 330 NGCAREALNQFIKMRQEKTD-SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYR 388
            G +  + +  I    E  D  V + T  S+L+A+  +       QLH ++ + GF   +
Sbjct: 430 TGRSNASWSSQI----ESMDVGVSTFTFASLLSAAATVGLPTKGQQLHALSIKTGFESDK 485

Query: 389 SVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTE 448
            + N L+S YS+CG +D A   F+EM    +V+SW +II     +GH E AL+L+H M  
Sbjct: 486 GISNSLVSMYSRCGYLDDACRAFDEMEDDHNVISWTSIISALAKHGHAERALSLFHDMIL 545

Query: 449 TGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLS 508
           +G  P+  TY+++L+AC H GL  +G   F  M +++++ P  EHY C+VDLLAR+G + 
Sbjct: 546 SGVKPNDVTYIAVLSACSHVGLVKEGKEYFRSMQKDHRLIPRMEHYACMVDLLARSGLVQ 605

Query: 509 DASGLAGKLLEGMGPNIWRALLSGC 533
           +A     ++       +W+ LL  C
Sbjct: 606 EALEFINEMPCKADALVWKTLLGAC 630



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 128/486 (26%), Positives = 223/486 (45%), Gaps = 54/486 (11%)

Query: 89  LARSIH-GLMVKFGLESD----------------------LFEGLKN-PYLVSCNAIVAG 124
           L R++H  L+    L++D                      +F+G++    LVS  A+   
Sbjct: 61  LGRALHRRLLGTEVLDADALVANSLLTMYSKCGHVRAARRVFDGMRGLRDLVSWTAMAFC 120

Query: 125 FINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS--RALCELIHGLTIKLGLI 182
              N   Q+A++L      SGL PNA T+      C   G   R+    + G  IK G  
Sbjct: 121 LTRNGAEQEALVLLGEMLESGLRPNAFTLCAAAHACFP-GELFRSSGGTVLGFAIKTGFW 179

Query: 183 -LDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFRE 241
             DVSV  +++DM++   DL AA ++F  +  + V+ WT M+  +V    AG A+++F  
Sbjct: 180 GTDVSVGCALIDMFARNGDLVAARKVFNGLVERTVVVWTLMITRYVQGGCAGKAVELFLG 239

Query: 242 MRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKC-- 299
           M +     D   + +++S  A  G    G+QLH+ V+  GL S+  +S  ++ MY+K   
Sbjct: 240 MLEDGFEPDGYTMSSMVSACAEQGSAGLGQQLHSLVLRLGLVSDTCVSCGLVDMYTKLQM 299

Query: 300 -GDLDSSRSVFNQITEKSLVSWTAIISGYVQ-NGCAREALNQFIKMRQEKTDSVDSITLV 357
              ++ +R VF ++   +++SWTA+ISGYVQ  G    A+    +M  E  +  + +T  
Sbjct: 300 EQSMECARKVFKRMPTHNVMSWTALISGYVQCGGQENNAVELLCEMLNESIEP-NHLTYS 358

Query: 358 SILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFL 417
           S+L A   L+  +   Q+H    +        V N L+S Y++ G ++ A   F+++ + 
Sbjct: 359 SLLKACANLSDQDSGRQIHARVMKTSIGNVNVVGNALVSMYAESGCMEEARKAFDQL-YE 417

Query: 418 RDVVSWNTIIYGYGVNGHGETAL--ALYHKMTETGEVPDSS-TYLSILNACGHAGLTNDG 474
           R+++S ++ I        GET    A +    E+ +V  S+ T+ S+L+A    GL   G
Sbjct: 418 RNLLSTSSDI--------GETGRSNASWSSQIESMDVGVSTFTFASLLSAAATVGLPTKG 469

Query: 475 LVIFNQMIEENKVKPSQEH----YGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALL 530
                Q +    +K   E        +V + +R G L DA     ++ +      W +++
Sbjct: 470 -----QQLHALSIKTGFESDKGISNSLVSMYSRCGYLDDACRAFDEMEDDHNVISWTSII 524

Query: 531 SGCVLH 536
           S    H
Sbjct: 525 SALAKH 530


>gi|49387750|dbj|BAD26238.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190136|gb|EEC72563.1| hypothetical protein OsI_05996 [Oryza sativa Indica Group]
          Length = 803

 Score =  246 bits (627), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 161/618 (26%), Positives = 289/618 (46%), Gaps = 100/618 (16%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           LL  Y K G + +A  LF  +   N VS++ ++ G +  G  + +++ F+ M  SG+  +
Sbjct: 182 LLGMYTKCGSVGDAVRLFYGMARPNEVSFTAMMGGLAQTGSIDDALRLFARMCRSGVPVD 241

Query: 71  SFTMVGVLVAAAGL--------QNLELARSIHGLMVKFGLESD----------------- 105
             ++  VL A A          +   L ++IH L+V+ G  SD                 
Sbjct: 242 PVSVSSVLGACAQACATDYSVARAFRLGQAIHALVVRKGFGSDQHVGNSLIDMYTKCVEM 301

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +FE L +  +VS N ++ GF       +AV + +  + +G  PN VT   ++  C
Sbjct: 302 DEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTYSNLLASC 361

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
           +                                      D+ +A  +F ++    V +W 
Sbjct: 362 IKA-----------------------------------RDVHSARAMFDKISRPSVTTWN 386

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++  +   E   D +++FR M+   +  D   L  ++S  + LG L  G+Q+H+  V  
Sbjct: 387 TLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRF 446

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
            L +++ +++ ++ MYSKCG +  +RS+FN++TE+ +V W +IISG   +   +EA + F
Sbjct: 447 LLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFF 506

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            +MR+      +S +  S++ +   L+++    Q+H    + G+ +   V + LI  Y+K
Sbjct: 507 KQMRENGIMPTES-SYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAK 565

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CGN+D A + F+ M  ++++V+WN +I+GY  NG G+ A+ L+  M  T + PD+ T+++
Sbjct: 566 CGNMDDARLFFDTM-MMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIA 624

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           +L  C H+GL +  +  FN M     + P  EHY C++D L RAG   +   L  K+   
Sbjct: 625 VLTGCSHSGLVDKAMAFFNSMENSYGIIPLAEHYTCLIDALGRAGRFVEVEALIHKMPCK 684

Query: 521 MGPNIWRALLSGCVLH---------------------------------VGRFQDAEALR 547
             P IW  LL+ CV+H                                 +GR  DA A+R
Sbjct: 685 DDPIIWEVLLAACVVHHNAELGKCAAEHLFRIDPKNPSPYVLLSNIYASLGRHGDASAVR 744

Query: 548 SGSQKKGIIKIPGISFLN 565
           +    +G++K  G S+++
Sbjct: 745 ALMSNRGVVKGRGYSWID 762



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 101/435 (23%), Positives = 206/435 (47%), Gaps = 15/435 (3%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L+  Y K  ++ EA  +F+ +P   +VSW+I+I G+   G   K+++  S M 
Sbjct: 284 DQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQ 343

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVA 123
            +G  PN  T   +L +    +++  AR+             +F+ +  P + + N +++
Sbjct: 344 EAGFEPNEVTYSNLLASCIKARDVHSARA-------------MFDKISRPSVTTWNTLLS 390

Query: 124 GFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLIL 183
           G+   +  Q  + LF   +   + P+  T+  ++  C  LG       +H  +++  L  
Sbjct: 391 GYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLLHN 450

Query: 184 DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMR 243
           D+ V + ++DMYS    +  A  IF +M  +DV+ W  ++          +A   F++MR
Sbjct: 451 DMFVASGLVDMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMR 510

Query: 244 KSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLD 303
           ++ I+    +  ++I+  + L  +  G+Q+HAQV+  G    + + +++I MY+KCG++D
Sbjct: 511 ENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMD 570

Query: 304 SSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTAS 363
            +R  F+ +  K++V+W  +I GY QNG   +A+  F  M   +    D++T +++LT  
Sbjct: 571 DARLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKP-DAVTFIAVLTGC 629

Query: 364 GELAALEICLQ-LHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVS 422
                ++  +   + +    G         CLI +  + G       +  +M    D + 
Sbjct: 630 SHSGLVDKAMAFFNSMENSYGIIPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKDDPII 689

Query: 423 WNTIIYGYGVNGHGE 437
           W  ++    V+ + E
Sbjct: 690 WEVLLAACVVHHNAE 704



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 121/504 (24%), Positives = 223/504 (44%), Gaps = 73/504 (14%)

Query: 46  YSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD 105
           YS  G    ++ AF  +      PN ++    L AA    +L+ AR             D
Sbjct: 53  YSRAGLPRHALLAFRALPS----PNDYSYNAALSAACRAGDLDAAR-------------D 95

Query: 106 LFEGLKNPYLVSCNAIVAGFINNK-LFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
           L  G+     VS N +++    +     +AV ++   R  GL+P   T+ +V+  C  L 
Sbjct: 96  LLGGMPRRNAVSWNTVISALARSPGDGGEAVEMYGRMRAEGLLPTHFTLASVLSACGGLA 155

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
           +       HG+ +K+GL  +  V N++L MY+    +  A+++F  M   + +S+T MMG
Sbjct: 156 ALGDGRRCHGVAVKVGLDANQFVENALLGMYTKCGSVGDAVRLFYGMARPNEVSFTAMMG 215

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNA--------ILGDLKRGKQLHAQ 276
                    DAL++F  M +S +  D V++ +++   A        +    + G+ +HA 
Sbjct: 216 GLAQTGSIDDALRLFARMCRSGVPVDPVSVSSVLGACAQACATDYSVARAFRLGQAIHAL 275

Query: 277 VVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNG-CARE 335
           VV  G  S+  + NS+I MY+KC ++D +  VF  +   ++VSW  +I+G+ Q G CA+ 
Sbjct: 276 VVRKGFGSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAK- 334

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLI 395
                         +V+ ++L+                       EAGF       + L+
Sbjct: 335 --------------AVEVLSLMQ----------------------EAGFEPNEVTYSNLL 358

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
           +S  K  +V  A  +F+++     V +WNT++ GY      +  + L+ +M      PD 
Sbjct: 359 ASCIKARDVHSARAMFDKIS-RPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDR 417

Query: 456 STYLSILNACGHAGLTNDGLVIFNQMIE---ENKVKPSQEHYGCVVDLLARAGCLSDASG 512
           +T   IL++C   G+ + G  + +  +     N +  +      +VD+ ++ G +  A  
Sbjct: 418 TTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASG----LVDMYSKCGQIGIARS 473

Query: 513 LAGKLLEGMGPNIWRALLSGCVLH 536
           +  K+ E      W +++SG  +H
Sbjct: 474 IFNKMTE-RDVVCWNSIISGLTIH 496


>gi|356550971|ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 703

 Score =  246 bits (627), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 143/433 (33%), Positives = 238/433 (54%), Gaps = 4/433 (0%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLF-NFFRGSGLVPNAVTMLTVIRGCVALG 164
           LF+ +    +VS +A++ G+++     + + LF N        PN      V+  C   G
Sbjct: 83  LFDRMLQRNVVSWSALMMGYLHKGEVLEVLGLFRNLVSLDSAYPNEYIFTIVLSCCADSG 142

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
                +  HG  +K GL+L   V N+++ MYS    +D+A+QI   +   DV S+  ++ 
Sbjct: 143 RVKEGKQCHGYLLKSGLLLHQYVKNALIHMYSRCFHVDSAMQILDTVPGDDVFSYNSILS 202

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
             V+    G+A ++ + M    +I D+V  ++++ + A + DL+ G Q+HAQ++  GL  
Sbjct: 203 ALVESGCRGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIRDLQLGLQIHAQLLKTGLVF 262

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           ++ +S+++I  Y KCG++ ++R  F+ + ++++V+WTA+++ Y+QNG   E LN F KM 
Sbjct: 263 DVFVSSTLIDTYGKCGEVLNARKQFDGLRDRNVVAWTAVLTAYLQNGHFEETLNLFTKME 322

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
            E T   +  T   +L A   L AL     LHG    +GF  +  V N LI+ YSK GN+
Sbjct: 323 LEDTRP-NEFTFAVLLNACASLVALAYGDLLHGRIVMSGFKNHLIVGNALINMYSKSGNI 381

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           D +Y VF  M   RDV++WN +I GY  +G G+ AL ++  M   GE P+  T++ +L+A
Sbjct: 382 DSSYNVFSNM-MNRDVITWNAMICGYSHHGLGKQALLVFQDMMSAGECPNYVTFIGVLSA 440

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C H  L  +G   F+Q++++  V+P  EHY C+V LL RAG L +A        +     
Sbjct: 441 CVHLALVQEGFYYFDQIMKKFDVEPGLEHYTCMVALLGRAGLLDEAENFMKTTTQVKWDV 500

Query: 525 I-WRALLSGCVLH 536
           + WR LL+ C +H
Sbjct: 501 VAWRTLLNACHIH 513



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 125/513 (24%), Positives = 239/513 (46%), Gaps = 48/513 (9%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM-LSGLLP 69
           L++ Y K G+ K A  LFD + ++NVVSWS ++ GY   G   + +  F +++ L    P
Sbjct: 67  LINLYSKCGQSKCARKLFDRMLQRNVVSWSALMMGYLHKGEVLEVLGLFRNLVSLDSAYP 126

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYL-------------- 115
           N +    VL   A    ++  +  HG ++K GL   L + +KN  +              
Sbjct: 127 NEYIFTIVLSCCADSGRVKEGKQCHGYLLKSGLL--LHQYVKNALIHMYSRCFHVDSAMQ 184

Query: 116 ----------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
                      S N+I++  + +    +A  +        ++ ++VT ++V+  C  +  
Sbjct: 185 ILDTVPGDDVFSYNSILSALVESGCRGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIRD 244

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
             L   IH   +K GL+ DV V+++++D Y    ++  A + F  +  ++V++WT ++  
Sbjct: 245 LQLGLQIHAQLLKTGLVFDVFVSSTLIDTYGKCGEVLNARKQFDGLRDRNVVAWTAVLTA 304

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           ++   +  + L +F +M       +      L++  A L  L  G  LH ++V+ G ++ 
Sbjct: 305 YLQNGHFEETLNLFTKMELEDTRPNEFTFAVLLNACASLVALAYGDLLHGRIVMSGFKNH 364

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           L + N++I MYSK G++DSS +VF+ +  + +++W A+I GY  +G  ++AL  F  M  
Sbjct: 365 LIVGNALINMYSKSGNIDSSYNVFSNMMNRDVITWNAMICGYSHHGLGKQALLVFQDM-M 423

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQ-----LHGIAFEAGFPRYRSVQNCLISSYSK 400
              +  + +T + +L+A   LA ++         +     E G   Y     C+++   +
Sbjct: 424 SAGECPNYVTFIGVLSACVHLALVQEGFYYFDQIMKKFDVEPGLEHY----TCMVALLGR 479

Query: 401 CGNVDLAYIVFEEMGFLR-DVVSWNTIIYGYGVNGHGETALALYHKMTET---GEVPDSS 456
            G +D A    +    ++ DVV+W T++       H      L  ++TET    +  D  
Sbjct: 480 AGLLDEAENFMKTTTQVKWDVVAWRTLLNA----CHIHRNYNLGKQITETVIQMDPHDVG 535

Query: 457 TYLSILNACGHAGLTN-DGLVIFNQMIEENKVK 488
           TY  + N   HA     DG+V   ++++E  +K
Sbjct: 536 TYTLLSNM--HAKARKWDGVVKIRKLMKERNIK 566



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 145/284 (51%), Gaps = 3/284 (1%)

Query: 184 DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMR 243
           D++  NS++++YS       A ++F  M  ++V+SW+ +M  ++      + L +FR + 
Sbjct: 60  DITQINSLINLYSKCGQSKCARKLFDRMLQRNVVSWSALMMGYLHKGEVLEVLGLFRNLV 119

Query: 244 KSRIICDTVALLNLI-SVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDL 302
                     +  ++ S  A  G +K GKQ H  ++  GL     + N++I MYS+C  +
Sbjct: 120 SLDSAYPNEYIFTIVLSCCADSGRVKEGKQCHGYLLKSGLLLHQYVKNALIHMYSRCFHV 179

Query: 303 DSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTA 362
           DS+  + + +    + S+ +I+S  V++GC  EA  Q +K   ++    DS+T VS+L  
Sbjct: 180 DSAMQILDTVPGDDVFSYNSILSALVESGCRGEAA-QVLKRMVDECVIWDSVTYVSVLGL 238

Query: 363 SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVS 422
             ++  L++ LQ+H    + G      V + LI +Y KCG V  A   F+ +   R+VV+
Sbjct: 239 CAQIRDLQLGLQIHAQLLKTGLVFDVFVSSTLIDTYGKCGEVLNARKQFDGLRD-RNVVA 297

Query: 423 WNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           W  ++  Y  NGH E  L L+ KM      P+  T+  +LNAC 
Sbjct: 298 WTAVLTAYLQNGHFEETLNLFTKMELEDTRPNEFTFAVLLNACA 341



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 148/308 (48%), Gaps = 27/308 (8%)

Query: 249 CDTVALLNLISVNAILGDLKRGKQLHAQVVL---GGLQSELRLSNSIIAMYSKCGDLDSS 305
           C    ++NL+  +A    L+ GK +HAQ+V+       S++   NS+I +YSKCG    +
Sbjct: 21  CSLKEVVNLLKFSATAKSLRFGKTIHAQLVVRNQTSKDSDITQINSLINLYSKCGQSKCA 80

Query: 306 RSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGE 365
           R +F+++ ++++VSW+A++ GY+  G   E L  F  +    +   +      +L+   +
Sbjct: 81  RKLFDRMLQRNVVSWSALMMGYLHKGEVLEVLGLFRNLVSLDSAYPNEYIFTIVLSCCAD 140

Query: 366 LAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNT 425
              ++   Q HG   ++G   ++ V+N LI  YS+C +VD A  + + +    DV S+N+
Sbjct: 141 SGRVKEGKQCHGYLLKSGLLLHQYVKNALIHMYSRCFHVDSAMQILDTVPG-DDVFSYNS 199

Query: 426 IIYGYGVNG-HGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEE 484
           I+     +G  GE A  L  +M +   + DS TY+S+L  C        GL I  Q+++ 
Sbjct: 200 ILSALVESGCRGEAAQVL-KRMVDECVIWDSVTYVSVLGLCAQIRDLQLGLQIHAQLLKT 258

Query: 485 NKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP-------NI--WRALLSGCVL 535
                     G V D+   +  L D  G  G++L            N+  W A+L+   L
Sbjct: 259 ----------GLVFDVFV-SSTLIDTYGKCGEVLNARKQFDGLRDRNVVAWTAVLTA-YL 306

Query: 536 HVGRFQDA 543
             G F++ 
Sbjct: 307 QNGHFEET 314



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 75/353 (21%), Positives = 158/353 (44%), Gaps = 26/353 (7%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +  Y  + L+  Y +   +  A  + D +P  +V S++ ++     +G   ++ +    M
Sbjct: 161 LHQYVKNALIHMYSRCFHVDSAMQILDTVPGDDVFSYNSILSALVESGCRGEAAQVLKRM 220

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------- 106
           +   ++ +S T V VL   A +++L+L   IH  ++K GL  D+                
Sbjct: 221 VDECVIWDSVTYVSVLGLCAQIRDLQLGLQIHAQLLKTGLVFDVFVSSTLIDTYGKCGEV 280

Query: 107 ------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                 F+GL++  +V+  A++  ++ N  F++ + LF         PN  T   ++  C
Sbjct: 281 LNARKQFDGLRDRNVVAWTAVLTAYLQNGHFEETLNLFTKMELEDTRPNEFTFAVLLNAC 340

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
            +L + A  +L+HG  +  G    + V N++++MYS   ++D++  +F  M  +DVI+W 
Sbjct: 341 ASLVALAYGDLLHGRIVMSGFKNHLIVGNALINMYSKSGNIDSSYNVFSNMMNRDVITWN 400

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+  +        AL +F++M  +    + V  + ++S    L  ++ G     Q++  
Sbjct: 401 AMICGYSHHGLGKQALLVFQDMMSAGECPNYVTFIGVLSACVHLALVQEGFYYFDQIMKK 460

Query: 281 -GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC 332
             ++  L     ++A+  + G LD + +     T+   V W  +    + N C
Sbjct: 461 FDVEPGLEHYTCMVALLGRAGLLDEAENFMKTTTQ---VKWDVVAWRTLLNAC 510


>gi|125551253|gb|EAY96962.1| hypothetical protein OsI_18881 [Oryza sativa Indica Group]
          Length = 822

 Score =  246 bits (627), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 164/563 (29%), Positives = 285/563 (50%), Gaps = 43/563 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPE-KNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           D   ++ LL+ Y + G +  A N+FD +   +++VSW+ +    + NG    S+     M
Sbjct: 83  DAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLARNGAERGSLLLIGEM 142

Query: 63  MLSGLLPNSFTMVGVLVA-------------------AAGLQNLELA--RSIHGLMVKFG 101
           + SGLLPN++T+     A                     GL   ++A   ++  ++ + G
Sbjct: 143 LESGLLPNAYTLCAAAHACFPHELYCLVGGVVLGLVHKMGLWGTDVAVGSALIDMLARNG 202

Query: 102 -LES--DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
            L S   +F+GL    +V    +++ ++  +  ++AV LF  F   G  P+  TM ++I 
Sbjct: 203 DLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELFLDFLEDGFEPDRYTMSSMIS 262

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCL---MDLDAAIQIFREMECKD 215
            C  LGS  L   +H L +++GL  D  V+  ++DMY+       +D A ++F  M   D
Sbjct: 263 ACTELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYAKSNIGQAMDYANKVFERMPKND 322

Query: 216 VISWTRMMGLFVDFEYAGD-ALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
           VISWT ++  +V      +  + +F EM    I  + +   +++   A + D   G+Q+H
Sbjct: 323 VISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHITYSSILKSCASISDHDSGRQVH 382

Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
           A V+     S   + N++++MY++ G ++ +R VFNQ+ E+S++             C  
Sbjct: 383 AHVIKSNQASAHTVGNALVSMYAESGCMEEARRVFNQLYERSMIP------------CIT 430

Query: 335 EALNQFIKMRQEKTD-SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC 393
           E  +  +  R  + D  + S T  S+++A+  +  L    QLH ++ +AGF   R V N 
Sbjct: 431 EGRDFPLDHRIVRMDVGISSSTFASLISAAASVGMLTKGQQLHAMSLKAGFGSDRFVSNS 490

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           L+S YS+CG ++ A   F E+   R+V+SW ++I G   +G+ E AL+L+H M  TG  P
Sbjct: 491 LVSMYSRCGYLEDACRSFNELKD-RNVISWTSMISGLAKHGYAERALSLFHDMILTGVKP 549

Query: 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL 513
           +  TY+++L+AC H GL  +G   F  M  ++ + P  EHY C+VDLLAR+G + +A   
Sbjct: 550 NDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGIVKEALEF 609

Query: 514 AGKLLEGMGPNIWRALLSGCVLH 536
             ++       +W+ LL  C  H
Sbjct: 610 INEMPLKADALVWKTLLGACRSH 632



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 131/298 (43%), Gaps = 53/298 (17%)

Query: 265 GDLKRGKQLHAQVVLGGL-QSELRLSNSIIAMYSKCGDLDSSRSVFNQITE-KSLVSWTA 322
           GDL+ G+ LH +++ G L   +  ++NS++ +YS+CG + S+R+VF+ +   + +VSWTA
Sbjct: 62  GDLRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTA 121

Query: 323 IISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELA-ALEICLQLHGIAFE 381
           + S   +NG  R                  S+ L+  +  SG L  A  +C   H     
Sbjct: 122 MASCLARNGAER-----------------GSLLLIGEMLESGLLPNAYTLCAAAH----- 159

Query: 382 AGFPRYR----------------------SVQNCLISSYSKCGNVDLAYIVFEEMGFLRD 419
           A FP                         +V + LI   ++ G++  A  VF+ +   + 
Sbjct: 160 ACFPHELYCLVGGVVLGLVHKMGLWGTDVAVGSALIDMLARNGDLASARKVFDGL-IEKT 218

Query: 420 VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFN 479
           VV W  +I  Y      E A+ L+    E G  PD  T  S+++AC   G    GL + +
Sbjct: 219 VVVWTLLISRYVQGECAEEAVELFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHS 278

Query: 480 QMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN---IWRALLSGCV 534
             +       +    G +VD+ A++  +  A   A K+ E M  N    W AL+SG V
Sbjct: 279 LALRMGLASDACVSCG-LVDMYAKSN-IGQAMDYANKVFERMPKNDVISWTALISGYV 334


>gi|297819724|ref|XP_002877745.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297323583|gb|EFH54004.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 764

 Score =  246 bits (627), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 167/574 (29%), Positives = 283/574 (49%), Gaps = 34/574 (5%)

Query: 5   PYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSIN-GFHEKSMKAFSHMM 63
           PY ++ L+S Y + G +++A  LFD++PE+NVVS++ +   YS N  +   +    + M 
Sbjct: 45  PYKNNNLISMYVRCGSLEQARKLFDKMPERNVVSYNALYSAYSRNLDYASYAFSLINQMA 104

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG--------------------LE 103
              L PNS T   ++     L+++ +   +H  ++K G                    LE
Sbjct: 105 SESLKPNSSTFTSLVQVCTVLEDVLMGSLLHSQIIKLGYSDNVVVQTSVLGMYSSCGDLE 164

Query: 104 S--DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
           S   +FE +     V+ N ++ G   N   +  ++LF     SG+ P   T   V+  C 
Sbjct: 165 SARRIFECVNGGDAVAWNTMIVGIFRNDKIEDGLMLFRSMLMSGVDPTQFTYSMVLNACS 224

Query: 162 ALGSR--ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
            LGS   ++ +LIH   I   ++ D+ V N++LDMY    D+  A  +F ++   +++SW
Sbjct: 225 KLGSYRYSVGKLIHARMIVSDILADLPVENALLDMYCSCGDMKEAFYVFGKIHNPNLVSW 284

Query: 220 TRMMGLFVDFEYAGDALKIFREM-RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
             ++    +  +   A+ ++R + R S    D       I   A       GK LH QV 
Sbjct: 285 NSIISGCSENGFGEQAILMYRRLLRISTPRPDEYTFSAAIPATAEPEKFIHGKLLHGQVT 344

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
             G +  + +  ++++MY K G+ +S++ VF  ITE+ +V WT +I G  + G +  A+ 
Sbjct: 345 KLGYERSVFVGTTLLSMYFKNGEAESAQKVFGVITERDVVLWTEMIVGESRVGNSECAVQ 404

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
            FI+M +EK +  D  +L S+L A  ++A L      H +A + GF    SV   L+  Y
Sbjct: 405 LFIEMYREK-NRTDGFSLSSVLGACSDMAMLRQGQVFHSLAIKTGFDNVMSVSGALVDMY 463

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
            K G  + A  +F  +    D+  WN+++  Y  +G  E A + + ++ E G  PD+ TY
Sbjct: 464 GKNGKYETAESIFSLVSN-PDLKCWNSMLGAYSQHGMVEKAQSFFEQILENGFTPDAVTY 522

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK-L 517
           LS+L AC H G T +G  ++NQM +E  +    +HY C+V L+++AG L +A  L  +  
Sbjct: 523 LSLLAACSHKGSTQEGKFLWNQM-KEQGITAGFKHYSCMVSLVSKAGLLGEALELIKQSP 581

Query: 518 LEGMGPNIWRALLSGCV----LHVGRFQDAEALR 547
            E     +WR LLS CV    L +G +   + L+
Sbjct: 582 PENNQAELWRTLLSACVNARNLQIGLYAADQILK 615



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 156/326 (47%), Gaps = 11/326 (3%)

Query: 150 AVTMLTVIRGCVALGS-RALCELIHGLTIKLGL---ILDVSVNNSVLDMYSCLMDLDAAI 205
           A +++ + R CV++ + +  C+L H + +  G          NN+++ MY     L+ A 
Sbjct: 7   ASSVVELTRKCVSITALKRACQL-HAIILTAGAGSASESPYKNNNLISMYVRCGSLEQAR 65

Query: 206 QIFREMECKDVISWTRMMGLFV-DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAIL 264
           ++F +M  ++V+S+  +   +  + +YA  A  +  +M    +  ++    +L+ V  +L
Sbjct: 66  KLFDKMPERNVVSYNALYSAYSRNLDYASYAFSLINQMASESLKPNSSTFTSLVQVCTVL 125

Query: 265 GDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAII 324
            D+  G  LH+Q++  G    + +  S++ MYS CGDL+S+R +F  +     V+W  +I
Sbjct: 126 EDVLMGSLLHSQIIKLGYSDNVVVQTSVLGMYSSCGDLESARRIFECVNGGDAVAWNTMI 185

Query: 325 SGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQ--LHGIAFEA 382
            G  +N    + L  F  M     D     T   +L A  +L +    +   +H     +
Sbjct: 186 VGIFRNDKIEDGLMLFRSMLMSGVDPTQ-FTYSMVLNACSKLGSYRYSVGKLIHARMIVS 244

Query: 383 GFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALAL 442
                  V+N L+  Y  CG++  A+ VF ++    ++VSWN+II G   NG GE A+ +
Sbjct: 245 DILADLPVENALLDMYCSCGDMKEAFYVFGKI-HNPNLVSWNSIISGCSENGFGEQAILM 303

Query: 443 YHKMTE-TGEVPDSSTYLSILNACGH 467
           Y ++   +   PD  T+ + + A   
Sbjct: 304 YRRLLRISTPRPDEYTFSAAIPATAE 329


>gi|147790104|emb|CAN67593.1| hypothetical protein VITISV_000699 [Vitis vinifera]
          Length = 825

 Score =  246 bits (627), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 164/543 (30%), Positives = 269/543 (49%), Gaps = 32/543 (5%)

Query: 27  LFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQN 86
           +FD + ++NVV+W+ +I  Y       ++ K F  MM  G+ P   + V V  A   + +
Sbjct: 174 VFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAVWRMND 233

Query: 87  LELARSIHGLMVKFG------------------------LESDLFEGLKNPYLVSCNAIV 122
            + A  ++GL+VK G                           ++F+          N ++
Sbjct: 234 YDNANVLYGLVVKLGSDYVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWNTMI 293

Query: 123 AGFINNKLFQQAVLLF-NFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGL 181
            G++ N    +A+ LF           + VT L+ +     L    L   +H   +K   
Sbjct: 294 GGYVQNNCPIEAIDLFVQVMESEQFXLDDVTFLSALTAISQLQWLDLGRQLHAYILKSST 353

Query: 182 ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFRE 241
           IL V + N+++ MYS    +  + ++F  M  +DV++W  M+  FV      + L +  E
Sbjct: 354 ILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFE 413

Query: 242 MRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGD 301
           M+K   + D+V L  L+S+ + L   + GKQ HA ++  G+Q E  +   +I MY+K G 
Sbjct: 414 MQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFE-GMDGYLIDMYAKSGL 472

Query: 302 LDSSRSVF--NQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSI 359
           + +++ +F  N   ++   +W A+I+GY QNG + E    F KM ++     +++TL SI
Sbjct: 473 ITTAQQLFEKNSXYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRP-NAVTLASI 531

Query: 360 LTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRD 419
           L A   +  + +  Q+HG A      +   V   L+  YSK G +  A  VF E    ++
Sbjct: 532 LPACNPMGTIGLGKQIHGFAIRCFLNQNVFVGTALLDMYSKSGAITYAENVFAET-LEKN 590

Query: 420 VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFN 479
            V++ T+I  YG +G GE AL+L+H M  +G  PDS T+++IL+AC +AGL ++GL IF 
Sbjct: 591 SVTYTTMILSYGQHGMGERALSLFHAMLGSGIKPDSVTFVAILSACSYAGLVDEGLRIFQ 650

Query: 480 QMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL-LEGMGPNIWRALLSGCVLHVG 538
            M  E K++PS EHY CV D+L R G + +A      L  EG    IW +LL  C +H G
Sbjct: 651 SMEREYKIQPSSEHYCCVADMLGRVGRVXEAYEFVKGLGEEGNTFRIWGSLLGACRIH-G 709

Query: 539 RFQ 541
            F+
Sbjct: 710 EFE 712



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 136/498 (27%), Positives = 237/498 (47%), Gaps = 42/498 (8%)

Query: 12  LSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLP-N 70
           LS+  + G   +A +LFD IP    V W+ +I G+  N     ++  ++ M  S     +
Sbjct: 44  LSHLCRQGHPHQALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFD 103

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVK--FGLESDLFEGLKN---------PYL---- 115
           S+T    L A A  ++L+L +++H  +++  FG    ++  L N         PYL    
Sbjct: 104 SYTFSSTLKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAY 163

Query: 116 --------------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLT 155
                               V+ N +++ ++  +   +A  +F      G+ P  V+ + 
Sbjct: 164 DFNNCDLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVN 223

Query: 156 VIRGCVALGSRALCELIHGLTIKLG--LILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC 213
           V      +       +++GL +KLG   + D  V +S + MY+ L  +D A +IF     
Sbjct: 224 VFPAVWRMNDYDNANVLYGLVVKLGSDYVDDFFVVSSAIFMYAELGCVDFAREIFDCCLE 283

Query: 214 KDVISWTRMMGLFVDFEYAGDALKIFRE-MRKSRIICDTVALLNLISVNAILGDLKRGKQ 272
           ++   W  M+G +V      +A+ +F + M   +   D V  L+ ++  + L  L  G+Q
Sbjct: 284 RNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFXLDDVTFLSALTAISQLQWLDLGRQ 343

Query: 273 LHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC 332
           LHA ++      ++ + N+II MYS+CG + +S  VF+ + E+ +V+W  ++S +VQNG 
Sbjct: 344 LHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGL 403

Query: 333 AREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN 392
             E L    +M Q++   VDS+TL ++L+ +  L + EI  Q H      G  ++  +  
Sbjct: 404 DDEGLMLVFEM-QKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGI-QFEGMDG 461

Query: 393 CLISSYSKCGNVDLAYIVFEEMG-FLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE 451
            LI  Y+K G +  A  +FE+   + RD  +WN +I GY  NG  E   A++ KM E   
Sbjct: 462 YLIDMYAKSGLITTAQQLFEKNSXYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNV 521

Query: 452 VPDSSTYLSILNACGHAG 469
            P++ T  SIL AC   G
Sbjct: 522 RPNAVTLASILPACNPMG 539



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 118/444 (26%), Positives = 211/444 (47%), Gaps = 20/444 (4%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVP-NAVTMLTVIRGCVALG 164
           LF+ +  P  V  N I+ GFI N +   A+L +   R S     ++ T  + ++ C    
Sbjct: 59  LFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYTFSSTLKACAQAR 118

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYS-CLMDL------------DAAIQIFREM 211
           S  L + +H   ++        V NS+L+MYS CL ++            D   ++F  M
Sbjct: 119 SLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCDLVRRVFDTM 178

Query: 212 ECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGK 271
             ++V++W  M+  +V  E   +A K+FR M +  I    V+ +N+      + D     
Sbjct: 179 RKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAVWRMNDYDNAN 238

Query: 272 QLHAQVVLGGLQ--SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQ 329
            L+  VV  G     +  + +S I MY++ G +D +R +F+   E++   W  +I GYVQ
Sbjct: 239 VLYGLVVKLGSDYVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWNTMIGGYVQ 298

Query: 330 NGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS 389
           N C  EA++ F+++ + +   +D +T +S LTA  +L  L++  QLH    ++       
Sbjct: 299 NNCPIEAIDLFVQVMESEQFXLDDVTFLSALTAISQLQWLDLGRQLHAYILKSSTILQVV 358

Query: 390 VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
           + N +I  YS+CG++  ++ VF  M   RDVV+WNT++  +  NG  +  L L  +M + 
Sbjct: 359 ILNAIIVMYSRCGSIGTSFKVFSNM-LERDVVTWNTMVSAFVQNGLDDEGLMLVFEMQKQ 417

Query: 450 GEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSD 509
           G + DS T  ++L+   +      G      +I         + Y  ++D+ A++G ++ 
Sbjct: 418 GFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFEGMDGY--LIDMYAKSGLITT 475

Query: 510 ASGLAGK-LLEGMGPNIWRALLSG 532
           A  L  K          W A+++G
Sbjct: 476 AQQLFEKNSXYDRDEATWNAMIAG 499



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 172/373 (46%), Gaps = 27/373 (7%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS-GLLPNSFT 73
           Y + G +  A  +FD   E+N   W+ +I GY  N    +++  F  +M S     +  T
Sbjct: 265 YAELGCVDFAREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFXLDDVT 324

Query: 74  MVGVLVAAAGLQNLELARSIHGLMVK----------------------FGLESDLFEGLK 111
            +  L A + LQ L+L R +H  ++K                       G    +F  + 
Sbjct: 325 FLSALTAISQLQWLDLGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNML 384

Query: 112 NPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCEL 171
              +V+ N +V+ F+ N L  + ++L    +  G + ++VT+  ++     L S+ + + 
Sbjct: 385 ERDVVTWNTMVSAFVQNGLDDEGLMLVFEMQKQGFMVDSVTLTALLSLASNLRSQEIGKQ 444

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC--KDVISWTRMMGLFVDF 229
            H   I+ G+  +  ++  ++DMY+    +  A Q+F +     +D  +W  M+  +   
Sbjct: 445 AHAYLIRHGIQFE-GMDGYLIDMYAKSGLITTAQQLFEKNSXYDRDEATWNAMIAGYTQN 503

Query: 230 EYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLS 289
             + +   +FR+M +  +  + V L +++     +G +  GKQ+H   +   L   + + 
Sbjct: 504 GLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQIHGFAIRCFLNQNVFVG 563

Query: 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD 349
            +++ MYSK G +  + +VF +  EK+ V++T +I  Y Q+G    AL+ F  M      
Sbjct: 564 TALLDMYSKSGAITYAENVFAETLEKNSVTYTTMILSYGQHGMGERALSLFHAMLGSGIK 623

Query: 350 SVDSITLVSILTA 362
             DS+T V+IL+A
Sbjct: 624 P-DSVTFVAILSA 635



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 136/286 (47%), Gaps = 31/286 (10%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTM 74
           Y + G I  +  +F  + E++VV+W+ ++  +  NG  ++ +     M   G + +S T+
Sbjct: 367 YSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFEMQKQGFMVDSVTL 426

Query: 75  VGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLV------------------ 116
             +L  A+ L++ E+ +  H  +++ G++   FEG+ + YL+                  
Sbjct: 427 TALLSLASNLRSQEIGKQAHAYLIRHGIQ---FEGM-DGYLIDMYAKSGLITTAQQLFEK 482

Query: 117 ---------SCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRA 167
                    + NA++AG+  N L ++   +F       + PNAVT+ +++  C  +G+  
Sbjct: 483 NSXYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIG 542

Query: 168 LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
           L + IHG  I+  L  +V V  ++LDMYS    +  A  +F E   K+ +++T M+  + 
Sbjct: 543 LGKQIHGFAIRCFLNQNVFVGTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMILSYG 602

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQL 273
                  AL +F  M  S I  D+V  + ++S  +  G +  G ++
Sbjct: 603 QHGMGERALSLFHAMLGSGIKPDSVTFVAILSACSYAGLVDEGLRI 648



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 45/74 (60%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + LL  Y KSG I  AEN+F E  EKN V+++ +I  Y  +G  E+++  F  M+ SG+ 
Sbjct: 564 TALLDMYSKSGAITYAENVFAETLEKNSVTYTTMILSYGQHGMGERALSLFHAMLGSGIK 623

Query: 69  PNSFTMVGVLVAAA 82
           P+S T V +L A +
Sbjct: 624 PDSVTFVAILSACS 637


>gi|125525878|gb|EAY73992.1| hypothetical protein OsI_01877 [Oryza sativa Indica Group]
          Length = 870

 Score =  245 bits (626), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 168/590 (28%), Positives = 293/590 (49%), Gaps = 36/590 (6%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYS--INGFHEKSMKAFSHMMLSG 66
           S L+  Y K  K  ++  +F+EI  K++V+++ +I GYS  ++     + +  + M+ + 
Sbjct: 143 SSLIGLYSKFSKTNDSRGVFEEIINKDIVAYTSMITGYSETVDSIAWNAFEIATDMLQNN 202

Query: 67  LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK--FGLESDLFE-GLKNPY--------- 114
           L  N  T+V +L  A  L  L+  +S+H   ++   G+  D+ E  + N Y         
Sbjct: 203 LEINRVTLVSLLQIAGNLGALQEGKSLHCYSIRRAIGVSDDILETSIVNFYTRCGAYQSA 262

Query: 115 ----------LVSCNAIVAGFIN-NKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
                     + S NA+++G     + F     L        + P++VT   V+  C  L
Sbjct: 263 ATVLQNSKGTVASWNALLSGLNRAGQSFNAIQYLPVMLHEHKVTPDSVTFANVLSACAEL 322

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
                   IH   I+  + +DV +  +++++Y+    +  +  +F ++  KDV+S+  M+
Sbjct: 323 CYFCFAASIHAYFIRRFIPMDVVLTTALIEVYTKCTRVMRSKYLFDQLIIKDVVSYNAMI 382

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
             ++  + A +A  +   M    +  D   +L+L++  A   DL RG+ +H   +  G  
Sbjct: 383 YGYLQNDMANEATSLLNYMMAEGVAPDFATVLSLLAAFADQRDLVRGRWIHGFAIRHGFC 442

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
           S++ + N I+ MYS CG + ++R++F+ + +K+LVSWTA++ G + NG A E + Q  ++
Sbjct: 443 SDVDVENQILYMYSACGKIAAARAIFDSLEKKNLVSWTAMMKGCLSNGHADEVV-QLFQV 501

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
            Q+  +  DS++LV+ + A  +L  L    Q+H   + +   + +   N LIS+Y+KCG 
Sbjct: 502 MQKYGEKPDSVSLVTAVQAVSDLGHLNGLKQIHCFVYRSLLEKDKITANSLISAYAKCGK 561

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           +DL+  +F  + + R++ +WN +I  Y ++G     L ++ +M E    PD  T+ ++L 
Sbjct: 562 LDLSAGLFFSLKY-RNLDTWNAMISAYAMHGFHINVLEMFKQMEEENIQPDELTFSTVLT 620

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
           AC HAGL  DG  IFN M     V P +EHYGC+VDLL RAG L D              
Sbjct: 621 ACSHAGLVKDGWRIFNSMTSVYSVLPQEEHYGCMVDLLGRAGHLEDGYKFIKLSTLKDKS 680

Query: 524 NIWRALLSGCVLH----VGRFQDAEALRSGSQKKGIIKIPG-ISFLNSTS 568
            I+ ALLS C  H    +      E L  G Q      +PG  S+ N T+
Sbjct: 681 TIFCALLSACRTHGNTRLAHAISKELLEHGPQN----PVPGQTSWQNDTA 726



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 131/546 (23%), Positives = 255/546 (46%), Gaps = 43/546 (7%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C D    SK+LS Y   G + E+  +F +I   ++  W+  +  Y   G H  S+K    
Sbjct: 77  CWDVILGSKILSCYANLGALHESRLVFQKIVNDDISLWNSAMVDYFRAGVHADSLK---- 132

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---LFEGLKNPYLVSC 118
           + LSG   N F                +  S+ GL  KF   +D   +FE + N  +V+ 
Sbjct: 133 LALSG---NKF----------------VGSSLIGLYSKFSKTNDSRGVFEEIINKDIVAY 173

Query: 119 NAIVAGFIN--NKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLT 176
            +++ G+    + +   A  +      + L  N VT++++++    LG+    + +H  +
Sbjct: 174 TSMITGYSETVDSIAWNAFEIATDMLQNNLEINRVTLVSLLQIAGNLGALQEGKSLHCYS 233

Query: 177 IKLGL-ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDA 235
           I+  + + D  +  S+++ Y+      +A  + +  +   V SW  ++        + +A
Sbjct: 234 IRRAIGVSDDILETSIVNFYTRCGAYQSAATVLQNSK-GTVASWNALLSGLNRAGQSFNA 292

Query: 236 LKIFREM-RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIA 294
           ++    M  + ++  D+V   N++S  A L        +HA  +   +  ++ L+ ++I 
Sbjct: 293 IQYLPVMLHEHKVTPDSVTFANVLSACAELCYFCFAASIHAYFIRRFIPMDVVLTTALIE 352

Query: 295 MYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSI 354
           +Y+KC  +  S+ +F+Q+  K +VS+ A+I GY+QN  A EA +    M  E   + D  
Sbjct: 353 VYTKCTRVMRSKYLFDQLIIKDVVSYNAMIYGYLQNDMANEATSLLNYMMAEGV-APDFA 411

Query: 355 TLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM 414
           T++S+L A  +   L     +HG A   GF     V+N ++  YS CG +  A  +F+ +
Sbjct: 412 TVLSLLAAFADQRDLVRGRWIHGFAIRHGFCSDVDVENQILYMYSACGKIAAARAIFDSL 471

Query: 415 GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC---GH-AGL 470
              +++VSW  ++ G   NGH +  + L+  M + GE PDS + ++ + A    GH  GL
Sbjct: 472 E-KKNLVSWTAMMKGCLSNGHADEVVQLFQVMQKYGEKPDSVSLVTAVQAVSDLGHLNGL 530

Query: 471 TNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALL 530
                 ++  ++E++K+  +      ++   A+ G L  ++GL    L+    + W A++
Sbjct: 531 KQIHCFVYRSLLEKDKITANS-----LISAYAKCGKLDLSAGLFFS-LKYRNLDTWNAMI 584

Query: 531 SGCVLH 536
           S   +H
Sbjct: 585 SAYAMH 590



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 147/312 (47%), Gaps = 37/312 (11%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ L+  Y K  ++  ++ LFD++  K+VVS++ +I+GY  N    ++    ++MM  G+
Sbjct: 347 TTALIEVYTKCTRVMRSKYLFDQLIIKDVVSYNAMIYGYLQNDMANEATSLLNYMMAEGV 406

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
            P+  T++ +L A A  ++L   R IHG  ++ G  SD                      
Sbjct: 407 APDFATVLSLLAAFADQRDLVRGRWIHGFAIRHGFCSDVDVENQILYMYSACGKIAAARA 466

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F+ L+   LVS  A++ G ++N    + V LF   +  G  P++V+++T ++    LG 
Sbjct: 467 IFDSLEKKNLVSWTAMMKGCLSNGHADEVVQLFQVMQKYGEKPDSVSLVTAVQAVSDLGH 526

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
               + IH    +  L  D    NS++  Y+    LD +  +F  ++ +++ +W  M+  
Sbjct: 527 LNGLKQIHCFVYRSLLEKDKITANSLISAYAKCGKLDLSAGLFFSLKYRNLDTWNAMISA 586

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +    +  + L++F++M +  I  D +    +++  +  G +K G               
Sbjct: 587 YAMHGFHINVLEMFKQMEEENIQPDELTFSTVLTACSHAGLVKDG--------------- 631

Query: 286 LRLSNSIIAMYS 297
            R+ NS+ ++YS
Sbjct: 632 WRIFNSMTSVYS 643



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 126/264 (47%), Gaps = 18/264 (6%)

Query: 207 IFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGD 266
           +F    C DVI  ++++  + +     ++  +F+     +I+ D ++L N    +A++  
Sbjct: 71  VFTHGLCWDVILGSKILSCYANLGALHESRLVFQ-----KIVNDDISLWN----SAMVDY 121

Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISG 326
            + G  +HA  +   L     + +S+I +YSK    + SR VF +I  K +V++T++I+G
Sbjct: 122 FRAG--VHADSLKLALSGNKFVGSSLIGLYSKFSKTNDSRGVFEEIINKDIVAYTSMITG 179

Query: 327 YVQ--NGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGF 384
           Y +  +  A  A      M Q   + ++ +TLVS+L  +G L AL+    LH  +     
Sbjct: 180 YSETVDSIAWNAFEIATDMLQNNLE-INRVTLVSLLQIAGNLGALQEGKSLHCYSIRRAI 238

Query: 385 PRYRSV-QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALY 443
                + +  +++ Y++CG    A  V +       V SWN ++ G    G    A+   
Sbjct: 239 GVSDDILETSIVNFYTRCGAYQSAATVLQNSK--GTVASWNALLSGLNRAGQSFNAIQYL 296

Query: 444 HKMTETGEV-PDSSTYLSILNACG 466
             M    +V PDS T+ ++L+AC 
Sbjct: 297 PVMLHEHKVTPDSVTFANVLSACA 320



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 81/185 (43%), Gaps = 22/185 (11%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C D    +++L  Y   GKI  A  +FD + +KN+VSW+ ++ G   NG  ++ ++ F  
Sbjct: 442 CSDVDVENQILYMYSACGKIAAARAIFDSLEKKNLVSWTAMMKGCLSNGHADEVVQLFQV 501

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------- 105
           M   G  P+S ++V  + A + L +L   + IH  + +  LE D                
Sbjct: 502 MQKYGEKPDSVSLVTAVQAVSDLGHLNGLKQIHCFVYRSLLEKDKITANSLISAYAKCGK 561

Query: 106 ------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                 LF  LK   L + NA+++ +  +      + +F       + P+ +T  TV+  
Sbjct: 562 LDLSAGLFFSLKYRNLDTWNAMISAYAMHGFHINVLEMFKQMEEENIQPDELTFSTVLTA 621

Query: 160 CVALG 164
           C   G
Sbjct: 622 CSHAG 626


>gi|357465513|ref|XP_003603041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492089|gb|AES73292.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 729

 Score =  245 bits (626), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 164/552 (29%), Positives = 272/552 (49%), Gaps = 34/552 (6%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + L+  Y K G    A N+FD++  ++VVSW+++I GYS NG+   +++ F  M+     
Sbjct: 95  TSLIDLYMKLGFTSHARNMFDQMSYRDVVSWNVLICGYSQNGYLYHAIQLFVDMLRENFK 154

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVK--FGLESDL-------------------- 106
           PN  T+V +L +    + +   RSIHG  +K  FGL+S L                    
Sbjct: 155 PNQTTIVSLLPSCGCFELIFQGRSIHGFGIKAGFGLDSHLNNALMSMYAKCDDLEASQLL 214

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           F+ +    +VS N ++  +  N LF +A+L F      G  P++VT++ ++       + 
Sbjct: 215 FDEMDEKSVVSWNTMIGVYGQNGLFDKAILYFKEMLKEGFHPSSVTIMNLV------SAN 268

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
           A  E +H   +K G   D SV  S++ +Y+     + A Q+++    KD+I+ T ++  +
Sbjct: 269 AFPENVHCYVVKCGFTNDASVVTSLVCLYAKQGFTNTAKQLYKYYPTKDLITLTAIISSY 328

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
            +      A++ F +  +  I  D VAL+ ++           G   H   V  GL ++ 
Sbjct: 329 SEKGDIESAVECFIQTIQLDIKPDAVALIGVLHGITNPSHFAIGCTFHGYGVKSGLSNDC 388

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            ++N +I++YS+  +++++ S+F  + EK L++W ++ISG VQ G + +A+  F +M   
Sbjct: 389 LVANGLISLYSRFDEIEAALSLFYDMREKPLITWNSMISGCVQAGKSSDAMELFSEMSMC 448

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
                D+IT+ S+L+   +L  L I   LH             +   LI  YSKCG +D 
Sbjct: 449 GKKP-DAITIASLLSGCCQLGNLRIGETLHSYILRNNVRVEDFIGTALIDMYSKCGRLDY 507

Query: 407 AYIVFEEMGFLRD--VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           A  VF     ++D  + +WN II GY + G   TA   Y K+ E G  PD  T+L +L A
Sbjct: 508 AEKVFYN---IKDPCLATWNAIISGYSLYGLEHTAFGCYSKLQEQGLKPDKITFLGVLAA 564

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C H GL   GL  FN M +E  + PS +HY C+V LL + G   +A     K+       
Sbjct: 565 CTHGGLVYLGLEYFNIMTKEYGLMPSLQHYACIVALLGKEGLFKEAIEFINKMEIQPDSA 624

Query: 525 IWRALLSGCVLH 536
           +W ALL+ C + 
Sbjct: 625 VWGALLNACCIQ 636



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 130/485 (26%), Positives = 224/485 (46%), Gaps = 63/485 (12%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D + ++ L+S Y K   ++ ++ LFDE+ EK+VVSW+ +I  Y  NG  +K++  F  M
Sbjct: 190 LDSHLNNALMSMYAKCDDLEASQLLFDEMDEKSVVSWNTMIGVYGQNGLFDKAILYFKEM 249

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
           +  G  P+S T++ ++ A A  +N      +H  +VK G  +D                 
Sbjct: 250 LKEGFHPSSVTIMNLVSANAFPEN------VHCYVVKCGFTNDASVVTSLVCLYAKQGFT 303

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                L++      L++  AI++ +      + AV  F       + P+AV ++ V+ G 
Sbjct: 304 NTAKQLYKYYPTKDLITLTAIISSYSEKGDIESAVECFIQTIQLDIKPDAVALIGVLHGI 363

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
                 A+    HG  +K GL  D  V N ++ +YS   +++AA+ +F +M  K +I+W 
Sbjct: 364 TNPSHFAIGCTFHGYGVKSGLSNDCLVANGLISLYSRFDEIEAALSLFYDMREKPLITWN 423

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+   V    + DA+++F EM       D + + +L+S    LG+L+ G+ LH+ ++  
Sbjct: 424 SMISGCVQAGKSSDAMELFSEMSMCGKKPDAITIASLLSGCCQLGNLRIGETLHSYILRN 483

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
            ++ E  +  ++I MYSKCG LD +  VF  I +  L +W AIISGY   G    A   +
Sbjct: 484 NVRVEDFIGTALIDMYSKCGRLDYAEKVFYNIKDPCLATWNAIISGYSLYGLEHTAFGCY 543

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            K+ QE+    D IT + +L A             HG     G   +             
Sbjct: 544 SKL-QEQGLKPDKITFLGVLAAC-----------THGGLVYLGLEYFN------------ 579

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
                   I+ +E G +  +  +  I+   G  G  + A+   +KM      PDS+ + +
Sbjct: 580 --------IMTKEYGLMPSLQHYACIVALLGKEGLFKEAIEFINKMEIQ---PDSAVWGA 628

Query: 461 ILNAC 465
           +LNAC
Sbjct: 629 LLNAC 633



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 108/441 (24%), Positives = 202/441 (45%), Gaps = 39/441 (8%)

Query: 128 NKLFQQA----VLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALC--------ELIHGL 175
           + LFQ A    +++F     + + PN  T   +I+  ++  S   C          I   
Sbjct: 22  HSLFQNATSPALVIFRQILQANVNPNEFTFSLLIKAYLSSPSFTHCPSTAALQARQIQTQ 81

Query: 176 TIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDA 235
            +K G+   + V+ S++D+Y  L     A  +F +M  +DV+SW  ++  +    Y   A
Sbjct: 82  CLKRGVNQFIHVHTSLIDLYMKLGFTSHARNMFDQMSYRDVVSWNVLICGYSQNGYLYHA 141

Query: 236 LKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAM 295
           +++F +M +     +   +++L+        + +G+ +H   +  G   +  L+N++++M
Sbjct: 142 IQLFVDMLRENFKPNQTTIVSLLPSCGCFELIFQGRSIHGFGIKAGFGLDSHLNNALMSM 201

Query: 296 YSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSIT 355
           Y+KC DL++S+ +F+++ EKS+VSW  +I  Y QNG   +A+  F +M +E      S+T
Sbjct: 202 YAKCDDLEASQLLFDEMDEKSVVSWNTMIGVYGQNGLFDKAILYFKEMLKEGFHP-SSVT 260

Query: 356 LVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMG 415
           ++++++A+           +H    + GF    SV   L+  Y+K G  + A  +++   
Sbjct: 261 IMNLVSANA------FPENVHCYVVKCGFTNDASVVTSLVCLYAKQGFTNTAKQLYKYYP 314

Query: 416 FLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGL 475
             +D+++   II  Y   G  E+A+  + +  +    PD+   + +L+     G+TN   
Sbjct: 315 -TKDLITLTAIISSYSEKGDIESAVECFIQTIQLDIKPDAVALIGVLH-----GITNPSH 368

Query: 476 VIFNQMIEENKVKPSQEHYGCVVDLLARAGCLS-----DASGLAGKLLEGM--GPNI-WR 527
                      VK      G   D L   G +S     D    A  L   M   P I W 
Sbjct: 369 FAIGCTFHGYGVKS-----GLSNDCLVANGLISLYSRFDEIEAALSLFYDMREKPLITWN 423

Query: 528 ALLSGCVLHVGRFQDAEALRS 548
           +++SGCV   G+  DA  L S
Sbjct: 424 SMISGCV-QAGKSSDAMELFS 443


>gi|297798412|ref|XP_002867090.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312926|gb|EFH43349.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 803

 Score =  245 bits (626), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 154/552 (27%), Positives = 286/552 (51%), Gaps = 30/552 (5%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           ++ L  +  SG +++A  LFDE+ + +   W+++I G++  G + ++++ +  M+ SG+ 
Sbjct: 64  TRALRGFADSGLMEDALQLFDEMNKADTFVWNVMIKGFTSCGLYFEALQLYCRMVFSGVK 123

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------------- 106
            +SFT   V+ +  G+ +LE  + IH +++K    SD+                      
Sbjct: 124 ADSFTYPFVIKSVTGISSLEEGKKIHAMVIKLRFVSDVYVCNSLISLYMKLGCSWDAEKV 183

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           FE +    +VS N++++G++  +   ++++LF      G  P+  + ++ +  C  + S 
Sbjct: 184 FEEMPERDIVSWNSMISGYLALEDGFRSLMLFKEMLKFGFKPDRFSTMSALGACSHVYSP 243

Query: 167 ALCELIHGLTIKLGLIL-DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
            + + +H   ++  +   DV V  S+LDMYS   ++  A +IF+ +  +++++W  ++G 
Sbjct: 244 NMGKELHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFKCIIQRNIVAWNVLIGC 303

Query: 226 FVDFEYAGDALKIFREMRKSR-IICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
           +       DA   F++M +   +  D + L+NL+   AIL     G+ +H   +  G   
Sbjct: 304 YARNSRVTDAFLCFQKMSEQNGLQPDVITLINLLPACAIL----EGRTIHGYAMRRGFLP 359

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
            + L  ++I MY + G L S+  +F++I EK+L+SW +II+ YVQNG    AL  F K+ 
Sbjct: 360 HIVLDTALIDMYGEWGQLKSAEVIFDRIAEKNLISWNSIIAAYVQNGKNYSALELFQKL- 418

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
            + +   DS T+ SIL A  E  +L    Q+H    ++ +     + N L+  Y+ CG++
Sbjct: 419 WDSSLLPDSTTIASILPAYAESLSLSEGRQIHAYIVKSRYGSNTIILNSLVHMYAMCGDL 478

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           + A   F  +  L+DVVSWN+II  Y V+G G  ++ L+ +M  +   P+ ST+ S+L A
Sbjct: 479 EDARKCFNHV-LLKDVVSWNSIIMAYAVHGFGRISVCLFSEMIASKVDPNKSTFASLLAA 537

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C  +G+ ++G   F  M  E  + P  EHYG ++DL+ R G  S A     ++       
Sbjct: 538 CSISGMVDEGWEYFESMKREYGIDPGIEHYGYMLDLIGRTGNFSSAKRFIREMPFLPTAR 597

Query: 525 IWRALLSGCVLH 536
           IW +LL+    H
Sbjct: 598 IWGSLLNASRNH 609



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 119/457 (26%), Positives = 216/457 (47%), Gaps = 46/457 (10%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSI--NGFHEKSMKAFSH 61
           D Y  + L+S Y K G   +AE +F+E+PE+++VSW+ +I GY    +GF  +S+  F  
Sbjct: 160 DVYVCNSLISLYMKLGCSWDAEKVFEEMPERDIVSWNSMISGYLALEDGF--RSLMLFKE 217

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES----------------- 104
           M+  G  P+ F+ +  L A + + +  + + +H   V+  +E+                 
Sbjct: 218 MLKFGFKPDRFSTMSALGACSHVYSPNMGKELHCHAVRSRIETGDVMVMTSILDMYSKYG 277

Query: 105 ------DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFN-FFRGSGLVPNAVTMLTVI 157
                  +F+ +    +V+ N ++  +  N     A L F      +GL P+ +T++ ++
Sbjct: 278 EVSYAERIFKCIIQRNIVAWNVLIGCYARNSRVTDAFLCFQKMSEQNGLQPDVITLINLL 337

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
             C  L  R     IHG  ++ G +  + ++ +++DMY     L +A  IF  +  K++I
Sbjct: 338 PACAILEGRT----IHGYAMRRGFLPHIVLDTALIDMYGEWGQLKSAEVIFDRIAEKNLI 393

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           SW  ++  +V       AL++F+++  S ++ D+  + +++   A    L  G+Q+HA +
Sbjct: 394 SWNSIIAAYVQNGKNYSALELFQKLWDSSLLPDSTTIASILPAYAESLSLSEGRQIHAYI 453

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           V     S   + NS++ MY+ CGDL+ +R  FN +  K +VSW +II  Y  +G  R ++
Sbjct: 454 VKSRYGSNTIILNSLVHMYAMCGDLEDARKCFNHVLLKDVVSWNSIIMAYAVHGFGRISV 513

Query: 338 NQFIKMRQEKTDSVDSITLVSILTA---SGEL----AALEICLQLHGIAFEAGFPRYRSV 390
             F +M   K D   S T  S+L A   SG +       E   + +GI  + G   Y   
Sbjct: 514 CLFSEMIASKVDPNKS-TFASLLAACSISGMVDEGWEYFESMKREYGI--DPGIEHY--- 567

Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
              ++    + GN   A     EM FL     W +++
Sbjct: 568 -GYMLDLIGRTGNFSSAKRFIREMPFLPTARIWGSLL 603


>gi|356497951|ref|XP_003517819.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial-like [Glycine max]
          Length = 828

 Score =  245 bits (626), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 157/551 (28%), Positives = 283/551 (51%), Gaps = 27/551 (4%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + LL  Y + G + +A  +FDEI  +++VSWS V+  Y  NG   + ++    M+  G+ 
Sbjct: 141 TSLLGMYGELGCLSDARKVFDEIRVRDLVSWSSVVACYVENGRPREGLEMLRWMVSEGVG 200

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------L 106
           P+S TM+ V  A   +  L LA+S+HG +++  +  D                      +
Sbjct: 201 PDSVTMLSVAEACGKVGCLRLAKSVHGYVIRKEMAGDASLRNSLIVMYGQCSYLRGAKGM 260

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           FE + +P      ++++    N  F++A+  F   + S +  NAVTM++V+  C  LG  
Sbjct: 261 FESVSDPSTACWTSMISSCNQNGCFEEAIDAFKKMQESEVEVNAVTMISVLCCCARLGWL 320

Query: 167 ALCELIHGLTIKLGLI-LDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
              + +H   ++  +   D+ +  +++D Y+    + +  ++   +    V+SW  ++ +
Sbjct: 321 KEGKSVHCFILRREMDGADLDLGPALMDFYAACWKISSCEKLLCLIGNSSVVSWNTLISI 380

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +       +A+ +F  M +  ++ D+ +L + IS  A    ++ G+Q+H  V   G   E
Sbjct: 381 YAREGLNEEAMVLFVCMLEKGLMPDSFSLASSISACAGASSVRFGQQIHGHVTKRGFADE 440

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
             + NS++ MYSKCG +D + ++F++I EKS+V+W  +I G+ QNG + EAL  F +M  
Sbjct: 441 F-VQNSLMDMYSKCGFVDLAYTIFDKIWEKSIVTWNCMICGFSQNGISVEALKLFDEMCF 499

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
              D ++ +T +S + A      L     +H     +G  +   +   L+  Y+KCG++ 
Sbjct: 500 NCMD-INEVTFLSAIQACSNSGYLLKGKWIHHKLVVSGVQKDLYIDTALVDMYAKCGDLK 558

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            A  VF  M   + VVSW+ +I  YG++G    A  L+ KM E+   P+  T+++IL+AC
Sbjct: 559 TAQGVFNSMP-EKSVVSWSAMIAAYGIHGQITAATTLFTKMVESHIKPNEVTFMNILSAC 617

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI 525
            HAG   +G   FN M  +  + P+ EH+  +VDLL+RAG +  A  +     + +  +I
Sbjct: 618 RHAGSVEEGKFYFNSM-RDYGIVPNAEHFASIVDLLSRAGDIDGAYEIIKSTCQHIDASI 676

Query: 526 WRALLSGCVLH 536
           W ALL+GC +H
Sbjct: 677 WGALLNGCRIH 687



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 156/588 (26%), Positives = 287/588 (48%), Gaps = 33/588 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           DP  S+KLL +Y + G +  +  +F+  P  +   + ++I  Y  +   ++ +  + H +
Sbjct: 32  DPLASTKLLESYARMGSLHSSRLVFETHPSPDSFMFGVLIKCYLWHHLFDQVVSLYHHHI 91

Query: 64  LSG--LLPN-SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--------------- 105
             G  L  N +F    V+ A + +  L + R +HG +VK GL +D               
Sbjct: 92  QKGSRLTQNCTFLYPSVIKAISVVGGLVVGRKVHGRIVKTGLGTDHVIGTSLLGMYGELG 151

Query: 106 -------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                  +F+ ++   LVS +++VA ++ N   ++ + +  +    G+ P++VTML+V  
Sbjct: 152 CLSDARKVFDEIRVRDLVSWSSVVACYVENGRPREGLEMLRWMVSEGVGPDSVTMLSVAE 211

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C  +G   L + +HG  I+  +  D S+ NS++ MY     L  A  +F  +       
Sbjct: 212 ACGKVGCLRLAKSVHGYVIRKEMAGDASLRNSLIVMYGQCSYLRGAKGMFESVSDPSTAC 271

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           WT M+          +A+  F++M++S +  + V +++++   A LG LK GK +H  ++
Sbjct: 272 WTSMISSCNQNGCFEEAIDAFKKMQESEVEVNAVTMISVLCCCARLGWLKEGKSVHCFIL 331

Query: 279 LGGLQ-SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
              +  ++L L  +++  Y+ C  + S   +   I   S+VSW  +IS Y + G   EA+
Sbjct: 332 RREMDGADLDLGPALMDFYAACWKISSCEKLLCLIGNSSVVSWNTLISIYAREGLNEEAM 391

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
             F+ M  EK    DS +L S ++A    +++    Q+HG   + GF     VQN L+  
Sbjct: 392 VLFVCM-LEKGLMPDSFSLASSISACAGASSVRFGQQIHGHVTKRGFAD-EFVQNSLMDM 449

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           YSKCG VDLAY +F+++ + + +V+WN +I G+  NG    AL L+ +M       +  T
Sbjct: 450 YSKCGFVDLAYTIFDKI-WEKSIVTWNCMICGFSQNGISVEALKLFDEMCFNCMDINEVT 508

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL 517
           +LS + AC ++G    G  I ++++    V+        +VD+ A+ G L  A G+   +
Sbjct: 509 FLSAIQACSNSGYLLKGKWIHHKLVVSG-VQKDLYIDTALVDMYAKCGDLKTAQGVFNSM 567

Query: 518 LEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFLN 565
            E    + W A+++   +H G+   A  L +    +  IK   ++F+N
Sbjct: 568 PEKSVVS-WSAMIAAYGIH-GQITAATTLFT-KMVESHIKPNEVTFMN 612



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 127/487 (26%), Positives = 235/487 (48%), Gaps = 36/487 (7%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+  Y +   ++ A+ +F+ + + +   W+ +I   + NG  E+++ AF  M  S +  N
Sbjct: 244 LIVMYGQCSYLRGAKGMFESVSDPSTACWTSMISSCNQNGCFEEAIDAFKKMQESEVEVN 303

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKF---GLESDLFEGLKNPY------------- 114
           + TM+ VL   A L  L+  +S+H  +++    G + DL   L + Y             
Sbjct: 304 AVTMISVLCCCARLGWLKEGKSVHCFILRREMDGADLDLGPALMDFYAACWKISSCEKLL 363

Query: 115 -------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRA 167
                  +VS N +++ +    L ++A++LF      GL+P++ ++ + I  C    S  
Sbjct: 364 CLIGNSSVVSWNTLISIYAREGLNEEAMVLFVCMLEKGLMPDSFSLASSISACAGASSVR 423

Query: 168 LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
             + IHG   K G   D  V NS++DMYS    +D A  IF ++  K +++W  M+  F 
Sbjct: 424 FGQQIHGHVTKRGFA-DEFVQNSLMDMYSKCGFVDLAYTIFDKIWEKSIVTWNCMICGFS 482

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
               + +ALK+F EM  + +  + V  L+ I   +  G L +GK +H ++V+ G+Q +L 
Sbjct: 483 QNGISVEALKLFDEMCFNCMDINEVTFLSAIQACSNSGYLLKGKWIHHKLVVSGVQKDLY 542

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
           +  +++ MY+KCGDL +++ VFN + EKS+VSW+A+I+ Y  +G    A   F KM +  
Sbjct: 543 IDTALVDMYAKCGDLKTAQGVFNSMPEKSVVSWSAMIAAYGIHGQITAATTLFTKMVESH 602

Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC-----LISSYSKCG 402
               + +T ++IL+A     ++E      G  +      Y  V N      ++   S+ G
Sbjct: 603 IKP-NEVTFMNILSACRHAGSVE-----EGKFYFNSMRDYGIVPNAEHFASIVDLLSRAG 656

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
           ++D AY + +      D   W  ++ G  ++G  +    ++ ++ E     D+  Y  + 
Sbjct: 657 DIDGAYEIIKSTCQHIDASIWGALLNGCRIHGRMDLIHNIHKELREI-RTNDTGYYTLLS 715

Query: 463 NACGHAG 469
           N     G
Sbjct: 716 NIYAEGG 722



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 116/433 (26%), Positives = 207/433 (47%), Gaps = 24/433 (5%)

Query: 60  SHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCN 119
           +H++++GL  +      +L + A + +L  +R +             FE   +P      
Sbjct: 22  AHLVVTGLHSDPLASTKLLESYARMGSLHSSRLV-------------FETHPSPDSFMFG 68

Query: 120 AIVAGFINNKLFQQAVLLFNFF--RGSGLVPNAVTML-TVIRGCVALGSRALCELIHGLT 176
            ++  ++ + LF Q V L++    +GS L  N   +  +VI+    +G   +   +HG  
Sbjct: 69  VLIKCYLWHHLFDQVVSLYHHHIQKGSRLTQNCTFLYPSVIKAISVVGGLVVGRKVHGRI 128

Query: 177 IKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDAL 236
           +K GL  D  +  S+L MY  L  L  A ++F E+  +D++SW+ ++  +V+     + L
Sbjct: 129 VKTGLGTDHVIGTSLLGMYGELGCLSDARKVFDEIRVRDLVSWSSVVACYVENGRPREGL 188

Query: 237 KIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMY 296
           ++ R M    +  D+V +L++      +G L+  K +H  V+   +  +  L NS+I MY
Sbjct: 189 EMLRWMVSEGVGPDSVTMLSVAEACGKVGCLRLAKSVHGYVIRKEMAGDASLRNSLIVMY 248

Query: 297 SKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITL 356
            +C  L  ++ +F  +++ S   WT++IS   QNGC  EA++ F KM QE    V+++T+
Sbjct: 249 GQCSYLRGAKGMFESVSDPSTACWTSMISSCNQNGCFEEAIDAFKKM-QESEVEVNAVTM 307

Query: 357 VSILTASGELAALEICLQLHGIAFEAGFPRYR-SVQNCLISSYSKCGNVDLAYIVFEEMG 415
           +S+L     L  L+    +H              +   L+  Y+ C  +     +   +G
Sbjct: 308 ISVLCCCARLGWLKEGKSVHCFILRREMDGADLDLGPALMDFYAACWKISSCEKLLCLIG 367

Query: 416 FLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGL 475
               VVSWNT+I  Y   G  E A+ L+  M E G +PDS +  S ++AC  AG ++   
Sbjct: 368 N-SSVVSWNTLISIYAREGLNEEAMVLFVCMLEKGLMPDSFSLASSISAC--AGASS--- 421

Query: 476 VIFNQMIEENKVK 488
           V F Q I  +  K
Sbjct: 422 VRFGQQIHGHVTK 434



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 126/286 (44%), Gaps = 20/286 (6%)

Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISG 326
           L+   QLHA +V+ GL S+   S  ++  Y++ G L SSR VF          +  +I  
Sbjct: 14  LRSLSQLHAHLVVTGLHSDPLASTKLLESYARMGSLHSSRLVFETHPSPDSFMFGVLIKC 73

Query: 327 YVQNGCAREALNQFIKMRQEKTDSVDSITLV--SILTASGELAALEICLQLHGIAFEAGF 384
           Y+ +    + ++ +    Q+ +    + T +  S++ A   +  L +  ++HG   + G 
Sbjct: 74  YLWHHLFDQVVSLYHHHIQKGSRLTQNCTFLYPSVIKAISVVGGLVVGRKVHGRIVKTGL 133

Query: 385 PRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH 444
                +   L+  Y + G +  A  VF+E+  +RD+VSW++++  Y  NG     L +  
Sbjct: 134 GTDHVIGTSLLGMYGELGCLSDARKVFDEIR-VRDLVSWSSVVACYVENGRPREGLEMLR 192

Query: 445 KMTETGEVPDSSTYLSILNACGHAGLTN-----DGLVIFNQMIEENKVKPSQEHYGCVVD 499
            M   G  PDS T LS+  ACG  G         G VI  +M  +  ++ S         
Sbjct: 193 WMVSEGVGPDSVTMLSVAEACGKVGCLRLAKSVHGYVIRKEMAGDASLRNS--------- 243

Query: 500 LLARAGCLSDASGLAGKLLEGMGPNI--WRALLSGCVLHVGRFQDA 543
           L+   G  S   G  G       P+   W +++S C  + G F++A
Sbjct: 244 LIVMYGQCSYLRGAKGMFESVSDPSTACWTSMISSCNQN-GCFEEA 288



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 100/228 (43%), Gaps = 22/228 (9%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L+  Y K G +  A  +FD+I EK++V+W+ +I G+S NG   +++K F  M 
Sbjct: 439 DEFVQNSLMDMYSKCGFVDLAYTIFDKIWEKSIVTWNCMICGFSQNGISVEALKLFDEMC 498

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------- 106
            + +  N  T +  + A +    L   + IH  +V  G++ DL                 
Sbjct: 499 FNCMDINEVTFLSAIQACSNSGYLLKGKWIHHKLVVSGVQKDLYIDTALVDMYAKCGDLK 558

Query: 107 -----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                F  +    +VS +A++A +  +     A  LF     S + PN VT + ++  C 
Sbjct: 559 TAQGVFNSMPEKSVVSWSAMIAAYGIHGQITAATTLFTKMVESHIKPNEVTFMNILSACR 618

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFR 209
             GS    +         G++ +     S++D+ S   D+D A +I +
Sbjct: 619 HAGSVEEGKFYFNSMRDYGIVPNAEHFASIVDLLSRAGDIDGAYEIIK 666


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  245 bits (626), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 153/551 (27%), Positives = 284/551 (51%), Gaps = 33/551 (5%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTM 74
           Y K G + +A  +F  I   N VSW++++  ++ NG + +++  +  M+L GL P+    
Sbjct: 2   YGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMF 61

Query: 75  VGVLVAAAGLQNLELARSIHGLMVKFGL-ESDL----------------------FEGLK 111
           V  +   +  ++L+  + +H ++++  L E D+                      F+ + 
Sbjct: 62  VVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMG 121

Query: 112 NPYLVSCNAIVAGFINNKLFQQAVLLFNFF---RGSGLVPNAVTMLTVIRGCVALGSRAL 168
              LV+ NA++AG+  N   + A+ ++         G+ P+A+T  + +  C  +G  + 
Sbjct: 122 KKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQ 181

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
              I   T+  G   D  V N++++MYS    L++A ++F  ++ +DVI+W  M+  +  
Sbjct: 182 GREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAK 241

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
              A  AL++F+ M  +    + V  + L++    L DL++G+ +H +V   G +S+L +
Sbjct: 242 QGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVI 301

Query: 289 SNSIIAMYSKCGD-LDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
            N ++ MY+KC   L+ +R VF ++  + +++W  +I  YVQ G A++AL+ F +M+ E 
Sbjct: 302 GNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLEN 361

Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
             + + ITL ++L+A   L A      +H +           ++N L++ Y++CG++D  
Sbjct: 362 V-APNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDT 420

Query: 408 YIVFEEMGFLRD--VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
             VF     +RD  +VSW+T+I  Y  +GH  T L  + ++ + G   D  T +S L+AC
Sbjct: 421 VGVF---AAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSAC 477

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI 525
            H G+  +G+  F  M+ ++ + P   H+ C+VDLL+RAG L  A  L   +        
Sbjct: 478 SHGGMLKEGVQTFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVA 537

Query: 526 WRALLSGCVLH 536
           W +LLSGC LH
Sbjct: 538 WTSLLSGCKLH 548



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 143/498 (28%), Positives = 249/498 (50%), Gaps = 40/498 (8%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM---LS 65
           + L++ Y +   ++ A   FDE+ +K +V+W+ +I GYS NG H  ++K +  M+     
Sbjct: 98  TALITMYARCRDLELARKTFDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPE 157

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-------------------- 105
           G+ P++ T    L A   + ++   R I    V  G  SD                    
Sbjct: 158 GMKPDAITFSSALYACTVVGDISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESA 217

Query: 106 --LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
             +F+ LKN  +++ N +++G+       QA+ LF     +   PN VT + ++  C  L
Sbjct: 218 RKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNL 277

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYS-CLMDLDAAIQIFREMECKDVISWTRM 222
                   IH    + G   D+ + N +L+MY+ C   L+ A Q+F  M  +DVI+W  +
Sbjct: 278 EDLEQGRAIHRKVREDGYESDLVIGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNIL 337

Query: 223 MGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL 282
           +  +V +  A DAL IF++M+   +  + + L N++S  A+LG  ++GK +HA +  G  
Sbjct: 338 IVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRC 397

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
           ++++ L NS++ MY++CG LD +  VF  I +KSLVSW+ +I+ Y Q+G +R  L  F +
Sbjct: 398 KADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWE 457

Query: 343 MRQEKTDSVDSITLVSILTASGELAALEICLQL-------HGIAFEAGFPRYRSVQNCLI 395
           + QE   + D +T+VS L+A      L+  +Q        HG+A     P YR    C++
Sbjct: 458 LLQEGL-AADDVTMVSTLSACSHGGMLKEGVQTFLSMVGDHGLA-----PDYRHFL-CMV 510

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
              S+ G ++ A  +  +M FL D V+W +++ G  ++   + A  +  K+ E     + 
Sbjct: 511 DLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELESEDEH 570

Query: 456 STYLSILNACGHAGLTND 473
           ST   + N    AG  +D
Sbjct: 571 STVTLLSNVYAEAGRWDD 588



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/294 (30%), Positives = 155/294 (52%), Gaps = 4/294 (1%)

Query: 194 MYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVA 253
           MY     +  A+ +F  +E  + +SWT ++  F    +  +AL  +R M    +  D   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 254 LLNLISVNAILGDLKRGKQLHAQVVLGG-LQSELRLSNSIIAMYSKCGDLDSSRSVFNQI 312
            +  I V +   DLK+G+ LHA ++    L+ ++ L  ++I MY++C DL+ +R  F+++
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 313 TEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV--DSITLVSILTASGELAALE 370
            +K+LV+W A+I+GY +NG  R AL  +  M  +  + +  D+IT  S L A   +  + 
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDIS 180

Query: 371 ICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGY 430
              ++      +G+     VQN LI+ YSKCG+++ A  VF+ +   RDV++WNT+I GY
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKN-RDVIAWNTMISGY 239

Query: 431 GVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEE 484
              G    AL L+ +M      P+  T++ +L AC +      G  I  ++ E+
Sbjct: 240 AKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVRED 293



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 120/244 (49%), Gaps = 12/244 (4%)

Query: 295 MYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE--KTDSVD 352
           MY KCG +  + +VF+ I   + VSWT I++ + +NG  REAL  + +M  E  + D   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 353 SITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV-QNCLISSYSKCGNVDLAYIVF 411
            +  + + ++S +L   ++   LH +  E     +  +    LI+ Y++C +++LA   F
Sbjct: 61  FVVAIGVCSSSKDLKQGQL---LHAMILETRLLEFDIILGTALITMYARCRDLELARKTF 117

Query: 412 EEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM---TETGEVPDSSTYLSILNACGHA 468
           +EMG  + +V+WN +I GY  NG    AL +Y  M   +  G  PD+ T+ S L AC   
Sbjct: 118 DEMG-KKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVV 176

Query: 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRA 528
           G  + G  I  + +       S      ++++ ++ G L  A  +  + L+      W  
Sbjct: 177 GDISQGREIEARTVASGYASDSIVQ-NALINMYSKCGSLESARKVFDR-LKNRDVIAWNT 234

Query: 529 LLSG 532
           ++SG
Sbjct: 235 MISG 238


>gi|225464746|ref|XP_002265138.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic [Vitis vinifera]
          Length = 825

 Score =  245 bits (626), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 165/543 (30%), Positives = 270/543 (49%), Gaps = 32/543 (5%)

Query: 27  LFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQN 86
           +FD + ++NVV+W+ +I  Y       ++ K F  MM  G+ P   + V V  A   + +
Sbjct: 174 VFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAVWRMSD 233

Query: 87  LELARSIHGLMVKFG------------------------LESDLFEGLKNPYLVSCNAIV 122
            + A  ++GL+VK G                           ++F+          N ++
Sbjct: 234 YDNANVLYGLVVKLGSDFVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWNTMI 293

Query: 123 AGFINNKLFQQAVLLF-NFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGL 181
            G++ N    +A+ LF         V + VT L+ +     L    L   +H   +K   
Sbjct: 294 GGYVQNNCPIEAIDLFVQVMESEQFVLDDVTFLSALTAISQLQWLELGRQLHAYILKSST 353

Query: 182 ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFRE 241
           IL V + N+++ MYS    +  + ++F  M  +DV++W  M+  FV      + L +   
Sbjct: 354 ILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFA 413

Query: 242 MRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGD 301
           M+K   + D+V L  L+S+ + L   + GKQ HA ++  G+Q E  + + +I MY+K G 
Sbjct: 414 MQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFE-GMDSYLIDMYAKSGL 472

Query: 302 LDSSRSVF--NQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSI 359
           + +++ +F  N   ++   +W A+I+GY QNG + E    F KM ++     +++TL SI
Sbjct: 473 ITTAQQLFEKNSDYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRP-NAVTLASI 531

Query: 360 LTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRD 419
           L A   +  + +  Q+HG A      R   V   L+  YSK G +  A  VF E    ++
Sbjct: 532 LPACNPMGTIGLGKQIHGFAIRCFLNRNVFVGTALLDMYSKSGAITYAENVFAET-LEKN 590

Query: 420 VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFN 479
            V++ T+I  YG +G GE AL+L+H M  +G  PDS T+++IL+AC +AGL ++GL IF 
Sbjct: 591 SVTYTTMISSYGQHGMGERALSLFHAMLGSGIKPDSVTFVAILSACSYAGLVDEGLRIFQ 650

Query: 480 QMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL-LEGMGPNIWRALLSGCVLHVG 538
            M  E K++PS EHY CV D+L R G + +A      L  EG    IW +LL  C +H G
Sbjct: 651 SMEREYKIQPSAEHYCCVADMLGRVGRVVEAYEFVKGLGEEGNTFGIWGSLLGACRIH-G 709

Query: 539 RFQ 541
            F+
Sbjct: 710 EFE 712



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 136/498 (27%), Positives = 239/498 (47%), Gaps = 42/498 (8%)

Query: 12  LSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLP-N 70
           LS+  + G   +A +LFD IP    V W+ +I G+  N     ++  ++ M  S     +
Sbjct: 44  LSHLCRQGHPHQALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFD 103

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVK--FGLESDLFEGLKN---------PYL---- 115
           S+T    L A A  ++L+L +++H  +++  FG    ++  L N         PYL    
Sbjct: 104 SYTFSSTLKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAY 163

Query: 116 --------------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLT 155
                               V+ N +++ ++  +   +A  +F      G+ P  V+ + 
Sbjct: 164 DFNNCDLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVN 223

Query: 156 VIRGCVALGSRALCELIHGLTIKLG--LILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC 213
           V      +       +++GL +KLG   + D  V +S + MY+ L  +D A +IF     
Sbjct: 224 VFPAVWRMSDYDNANVLYGLVVKLGSDFVDDFFVVSSAIFMYAELGCVDFAREIFDCCLE 283

Query: 214 KDVISWTRMMGLFVDFEYAGDALKIFRE-MRKSRIICDTVALLNLISVNAILGDLKRGKQ 272
           ++   W  M+G +V      +A+ +F + M   + + D V  L+ ++  + L  L+ G+Q
Sbjct: 284 RNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFVLDDVTFLSALTAISQLQWLELGRQ 343

Query: 273 LHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC 332
           LHA ++      ++ + N+II MYS+CG + +S  VF+ + E+ +V+W  ++S +VQNG 
Sbjct: 344 LHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGL 403

Query: 333 AREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN 392
             E L     M Q++   VDS+TL ++L+ +  L + EI  Q H      G  ++  + +
Sbjct: 404 DDEGLMLVFAM-QKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGI-QFEGMDS 461

Query: 393 CLISSYSKCGNVDLAYIVFEEMG-FLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE 451
            LI  Y+K G +  A  +FE+   + RD  +WN +I GY  NG  E   A++ KM E   
Sbjct: 462 YLIDMYAKSGLITTAQQLFEKNSDYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNV 521

Query: 452 VPDSSTYLSILNACGHAG 469
            P++ T  SIL AC   G
Sbjct: 522 RPNAVTLASILPACNPMG 539



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 119/444 (26%), Positives = 211/444 (47%), Gaps = 20/444 (4%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVP-NAVTMLTVIRGCVALG 164
           LF+ +  P  V  N I+ GFI N +   A+L +   R S     ++ T  + ++ C    
Sbjct: 59  LFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYTFSSTLKACAQAR 118

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYS-CLMDL------------DAAIQIFREM 211
           S  L + +H   ++        V NS+L+MYS CL ++            D   ++F  M
Sbjct: 119 SLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCDLVRRVFDTM 178

Query: 212 ECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGK 271
             ++V++W  M+  +V  E   +A K+FR M +  I    V+ +N+      + D     
Sbjct: 179 RKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAVWRMSDYDNAN 238

Query: 272 QLHAQVVLGG--LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQ 329
            L+  VV  G     +  + +S I MY++ G +D +R +F+   E++   W  +I GYVQ
Sbjct: 239 VLYGLVVKLGSDFVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWNTMIGGYVQ 298

Query: 330 NGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS 389
           N C  EA++ F+++ + +   +D +T +S LTA  +L  LE+  QLH    ++       
Sbjct: 299 NNCPIEAIDLFVQVMESEQFVLDDVTFLSALTAISQLQWLELGRQLHAYILKSSTILQVV 358

Query: 390 VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
           + N +I  YS+CG++  ++ VF  M   RDVV+WNT++  +  NG  +  L L   M + 
Sbjct: 359 ILNAIIVMYSRCGSIGTSFKVFSNM-LERDVVTWNTMVSAFVQNGLDDEGLMLVFAMQKQ 417

Query: 450 GEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSD 509
           G + DS T  ++L+   +      G      +I         + Y  ++D+ A++G ++ 
Sbjct: 418 GFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFEGMDSY--LIDMYAKSGLITT 475

Query: 510 ASGLAGKLLE-GMGPNIWRALLSG 532
           A  L  K  +       W A+++G
Sbjct: 476 AQQLFEKNSDYDRDEATWNAMIAG 499



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 175/373 (46%), Gaps = 27/373 (7%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS-GLLPNSFT 73
           Y + G +  A  +FD   E+N   W+ +I GY  N    +++  F  +M S   + +  T
Sbjct: 265 YAELGCVDFAREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFVLDDVT 324

Query: 74  MVGVLVAAAGLQNLELARSIHGLMVK----------------------FGLESDLFEGLK 111
            +  L A + LQ LEL R +H  ++K                       G    +F  + 
Sbjct: 325 FLSALTAISQLQWLELGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNML 384

Query: 112 NPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCEL 171
              +V+ N +V+ F+ N L  + ++L    +  G + ++VT+  ++     L S+ + + 
Sbjct: 385 ERDVVTWNTMVSAFVQNGLDDEGLMLVFAMQKQGFMVDSVTLTALLSLASNLRSQEIGKQ 444

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME--CKDVISWTRMMGLFVDF 229
            H   I+ G+  +  +++ ++DMY+    +  A Q+F +     +D  +W  M+  +   
Sbjct: 445 AHAYLIRHGIQFE-GMDSYLIDMYAKSGLITTAQQLFEKNSDYDRDEATWNAMIAGYTQN 503

Query: 230 EYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLS 289
             + +   +FR+M +  +  + V L +++     +G +  GKQ+H   +   L   + + 
Sbjct: 504 GLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQIHGFAIRCFLNRNVFVG 563

Query: 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD 349
            +++ MYSK G +  + +VF +  EK+ V++T +IS Y Q+G    AL+ F  M      
Sbjct: 564 TALLDMYSKSGAITYAENVFAETLEKNSVTYTTMISSYGQHGMGERALSLFHAMLGSGIK 623

Query: 350 SVDSITLVSILTA 362
             DS+T V+IL+A
Sbjct: 624 P-DSVTFVAILSA 635



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 136/286 (47%), Gaps = 31/286 (10%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTM 74
           Y + G I  +  +F  + E++VV+W+ ++  +  NG  ++ +     M   G + +S T+
Sbjct: 367 YSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFAMQKQGFMVDSVTL 426

Query: 75  VGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLV------------------ 116
             +L  A+ L++ E+ +  H  +++ G++   FEG+ + YL+                  
Sbjct: 427 TALLSLASNLRSQEIGKQAHAYLIRHGIQ---FEGM-DSYLIDMYAKSGLITTAQQLFEK 482

Query: 117 ---------SCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRA 167
                    + NA++AG+  N L ++   +F       + PNAVT+ +++  C  +G+  
Sbjct: 483 NSDYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIG 542

Query: 168 LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
           L + IHG  I+  L  +V V  ++LDMYS    +  A  +F E   K+ +++T M+  + 
Sbjct: 543 LGKQIHGFAIRCFLNRNVFVGTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMISSYG 602

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQL 273
                  AL +F  M  S I  D+V  + ++S  +  G +  G ++
Sbjct: 603 QHGMGERALSLFHAMLGSGIKPDSVTFVAILSACSYAGLVDEGLRI 648



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 45/74 (60%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + LL  Y KSG I  AEN+F E  EKN V+++ +I  Y  +G  E+++  F  M+ SG+ 
Sbjct: 564 TALLDMYSKSGAITYAENVFAETLEKNSVTYTTMISSYGQHGMGERALSLFHAMLGSGIK 623

Query: 69  PNSFTMVGVLVAAA 82
           P+S T V +L A +
Sbjct: 624 PDSVTFVAILSACS 637


>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
          Length = 748

 Score =  245 bits (626), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 155/469 (33%), Positives = 239/469 (50%), Gaps = 46/469 (9%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRG---SGLVPNAVTMLTVIRGCVA 162
           LFE ++ P     N ++ G   N L    V   +F+      G+ PN+ T   +++ C  
Sbjct: 88  LFESIEQPNQFIWNTMIRG---NSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAK 144

Query: 163 LGSRALCELIHGLTIKLGLILDVSVNNSVLDMY---------------SCLMD------- 200
           +G+    + IHG  +KLGL  D  V+ S+++MY               S L D       
Sbjct: 145 VGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTAL 204

Query: 201 ---------LDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDT 251
                    LD A ++F E+  +D +SW  M+  +       +AL  F+EM+++ +  + 
Sbjct: 205 ITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNE 264

Query: 252 VALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQ 311
             ++ ++S  A  G L+ G  + + +   GL S LRL N++I MYSKCGDLD +R +F  
Sbjct: 265 STMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEG 324

Query: 312 ITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEI 371
           I EK ++SW  +I GY      +EAL  F KM+Q   +  D +T VSIL A   L AL++
Sbjct: 325 ICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPND-VTFVSILPACAYLGALDL 383

Query: 372 CLQLHGIAFEA--GFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYG 429
              +H    +   G     S+   LI  Y+KCGN++ A  VF  M   + + SWN +I G
Sbjct: 384 GKWIHAYIDKKFLGLTN-TSLWTSLIDMYAKCGNIEAAKQVFAGMK-PKSLGSWNAMISG 441

Query: 430 YGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKP 489
             ++GH   AL L+ +M + G  PD  T++ +L+AC HAGL   G   F+ M+E+  + P
Sbjct: 442 LAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISP 501

Query: 490 SQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN--IWRALLSGCVLH 536
             +HYGC++DLL RAG   +A  L   +   M P+  IW +LL  C +H
Sbjct: 502 KLQHYGCMIDLLGRAGLFDEAEALMKNM--EMKPDGAIWGSLLGACRVH 548



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 151/554 (27%), Positives = 250/554 (45%), Gaps = 66/554 (11%)

Query: 19  GKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVL 78
           G +  A  LF+ I + N   W+ +I G S++     ++  +  M+L G+ PNS+T   +L
Sbjct: 80  GNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLL 139

Query: 79  VAAAGLQNLELARSIHGLMVKFGLESD--------------------------------- 105
            + A +   +  + IHG ++K GLESD                                 
Sbjct: 140 KSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAV 199

Query: 106 --------------------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSG 145
                               LFE +     VS NA++AG+  +  F++A+  F   + + 
Sbjct: 200 SFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRAN 259

Query: 146 LVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAI 205
           + PN  TM+TV+  C   GS  L   +       GL  ++ + N+++DMYS   DLD A 
Sbjct: 260 VAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKAR 319

Query: 206 QIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILG 265
            +F  +  KD+ISW  M+G +       +AL +FR+M++S +  + V  ++++   A LG
Sbjct: 320 DLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLG 379

Query: 266 DLKRGKQLHAQVVLGGLQ-SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAII 324
            L  GK +HA +    L  +   L  S+I MY+KCG++++++ VF  +  KSL SW A+I
Sbjct: 380 ALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMI 439

Query: 325 SGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGF 384
           SG   +G A  AL  F +MR E  +  D IT V +L+A      +E+  Q      E  +
Sbjct: 440 SGLAMHGHANMALELFRQMRDEGFEP-DDITFVGVLSACSHAGLVELGRQCFSSMVE-DY 497

Query: 385 PRYRSVQN--CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETA-LA 441
                +Q+  C+I    + G  D A  + + M    D   W +++    V+G+ E    A
Sbjct: 498 DISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFA 557

Query: 442 LYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLL 501
             H      E P +   LS  N    AG  +D   I  ++  +  +K  Q+ Y  + ++ 
Sbjct: 558 AKHLFELEPENPGAYVLLS--NIYATAGRWDDVARIRTKL-NDKGMKKXQDIYKMLDEID 614

Query: 502 A----RAGCLSDAS 511
                R G + D S
Sbjct: 615 QSFGERPGXVPDTS 628



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 169/337 (50%), Gaps = 26/337 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D  + + L++ Y   G + +A  LF+EIP ++ VSW+ +I GY+ +G  E+++  F  M 
Sbjct: 197 DAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMK 256

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES------------------- 104
            + + PN  TMV VL A A   +LEL   +   +   GL S                   
Sbjct: 257 RANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLD 316

Query: 105 ---DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
              DLFEG+    ++S N ++ G+ +   +++A+ LF   + S + PN VT ++++  C 
Sbjct: 317 KARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACA 376

Query: 162 ALGSRALCELIHGLTIK--LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
            LG+  L + IH    K  LGL  + S+  S++DMY+   +++AA Q+F  M+ K + SW
Sbjct: 377 YLGALDLGKWIHAYIDKKFLGLT-NTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSW 435

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
             M+       +A  AL++FR+MR      D +  + ++S  +  G ++ G+Q  + +V 
Sbjct: 436 NAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVE 495

Query: 280 G-GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK 315
              +  +L+    +I +  + G  D + ++   +  K
Sbjct: 496 DYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMK 532



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 110/420 (26%), Positives = 197/420 (46%), Gaps = 47/420 (11%)

Query: 154 LTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDM--YSCLMDLDAAIQIFREM 211
           LT++  C +  +    + IH   IK GL       + +++    S   +L  A+ +F  +
Sbjct: 36  LTLLSTCKSFQN---LKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESI 92

Query: 212 ECKDVISWTRMM-GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG 270
           E  +   W  M+ G  +     G A+  +  M    +  ++     L+   A +G  + G
Sbjct: 93  EQPNQFIWNTMIRGNSLSSSPVG-AIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEG 151

Query: 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
           KQ+H  V+  GL+S+  +  S+I MY++ G+L  +  VF++ + +  VS+TA+I+GY   
Sbjct: 152 KQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLR 211

Query: 331 GC---AR----------------------------EALNQFIKMRQEKTDSVDSITLVSI 359
           GC   AR                            EAL  F +M++      +S T+V++
Sbjct: 212 GCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNES-TMVTV 270

Query: 360 LTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRD 419
           L+A  +  +LE+   +     + G      + N LI  YSKCG++D A  +FE +   +D
Sbjct: 271 LSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGI-CEKD 329

Query: 420 VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFN 479
           ++SWN +I GY      + ALAL+ KM ++   P+  T++SIL AC + G  + G  I  
Sbjct: 330 IISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHA 389

Query: 480 QMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN---IWRALLSGCVLH 536
            + ++     +   +  ++D+ A+ G +  A     ++  GM P     W A++SG  +H
Sbjct: 390 YIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAK----QVFAGMKPKSLGSWNAMISGLAMH 445


>gi|297813827|ref|XP_002874797.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297320634|gb|EFH51056.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 748

 Score =  245 bits (625), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 155/522 (29%), Positives = 259/522 (49%), Gaps = 26/522 (4%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L++ Y K G +  A  +FDE+ +++VV W+ +I  YS  G   ++      M   G+ P+
Sbjct: 87  LVNLYAKFGLLGHARKVFDEMRDRDVVHWTAMIGCYSRAGIFGEACSLVKEMRFQGIKPS 146

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFE 108
             T + +L   +G+  +   + +H   + +G E D                      LF+
Sbjct: 147 PVTFLEML---SGISEITQLQCLHAFALVYGFECDIAVMNSMLNLYCKCDRVGDAKELFD 203

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            ++   +VS N +++GF       + + L    R  GL P+  T    +     +    +
Sbjct: 204 QMEQRDMVSWNTMISGFAFVANMSEILKLLYRMRDDGLRPDQQTFGASLSVSGTMCDLEM 263

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
             ++H   +  G   D+ +  +++ MY    + +A+ ++   +  KDV+ WT M+   + 
Sbjct: 264 GRMLHCQIVGTGFDGDMHLRTALITMYLKCGEEEASYRVLETIPDKDVVCWTVMISGLMR 323

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
              A  AL +F EM  S     + A+ ++++  A LG    G  +H  V+  G   +   
Sbjct: 324 LGRAEKALIVFSEMLHSGSDLSSEAIASVVASCAQLGSFDLGASVHGYVLRQGYTLDTPA 383

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
            NS I MY+KCG LD S  +F ++ E+ LVSW AIISG+ Q+G   +AL  F +M+ +  
Sbjct: 384 LNSFITMYAKCGHLDKSLILFERMNERDLVSWNAIISGHAQHGDLCKALLLFEEMKFKTV 443

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
             VDS+T+VS+L A     AL +   +H I   +       V   L+  YSKCG ++ A 
Sbjct: 444 QQVDSLTVVSLLQACSSAGALPVGRMIHCIVIRSFIRPCTLVDTALVDMYSKCGYLEAAQ 503

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
             F  + + +DVVSW T+I GYG +G G+ AL +Y +    G  P+   +L++L++C H 
Sbjct: 504 RCFNSITW-KDVVSWGTLIAGYGFHGKGDIALEIYSEFLHFGMKPNHVIFLAVLSSCSHN 562

Query: 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
           G+   GL IF+ M+ +  V+P+ EH  CVVDLL RA  + DA
Sbjct: 563 GMVQQGLKIFSSMVRDFGVEPNHEHLACVVDLLCRAKRVEDA 604



 Score =  208 bits (530), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 165/587 (28%), Positives = 272/587 (46%), Gaps = 81/587 (13%)

Query: 43  IHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIH-------- 94
           I+  S +G H++ +  FS M+ + LLP++FT   +L A   LQ L    SIH        
Sbjct: 18  INHLSSHGDHKQVLSTFSSMLANKLLPDTFTFPSLLKACTSLQLLSFGLSIHQKVLVNGF 77

Query: 95  -----------GLMVKFGL---ESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNF 140
                       L  KFGL      +F+ +++  +V   A++  +    +F +A  L   
Sbjct: 78  SSDSYISSSLVNLYAKFGLLGHARKVFDEMRDRDVVHWTAMIGCYSRAGIFGEACSLVKE 137

Query: 141 FRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMD 200
            R  G+ P+ VT L ++ G   +      + +H   +  G   D++V NS+L++Y     
Sbjct: 138 MRFQGIKPSPVTFLEMLSG---ISEITQLQCLHAFALVYGFECDIAVMNSMLNLYCKCDR 194

Query: 201 LDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISV 260
           +  A ++F +ME +D++SW  M+  F       + LK+   MR   +  D       +SV
Sbjct: 195 VGDAKELFDQMEQRDMVSWNTMISGFAFVANMSEILKLLYRMRDDGLRPDQQTFGASLSV 254

Query: 261 NAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSW 320
           +  + DL+ G+ LH Q+V  G   ++ L  ++I MY KCG+ ++S  V   I +K +V W
Sbjct: 255 SGTMCDLEMGRMLHCQIVGTGFDGDMHLRTALITMYLKCGEEEASYRVLETIPDKDVVCW 314

Query: 321 TAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAF 380
           T +ISG ++ G A +AL  F +M    +D + S  + S++ +  +L + ++   +HG   
Sbjct: 315 TVMISGLMRLGRAEKALIVFSEMLHSGSD-LSSEAIASVVASCAQLGSFDLGASVHGYVL 373

Query: 381 EAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETAL 440
             G+       N  I+ Y+KCG++D + I+FE M   RD+VSWN II G+  +G    AL
Sbjct: 374 RQGYTLDTPALNSFITMYAKCGHLDKSLILFERMN-ERDLVSWNAIISGHAQHGDLCKAL 432

Query: 441 ALYHKMT-ETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVD 499
            L+ +M  +T +  DS T +S+L AC  AG    G +I + ++  + ++P       +VD
Sbjct: 433 LLFEEMKFKTVQQVDSLTVVSLLQACSSAGALPVGRMI-HCIVIRSFIRPCTLVDTALVD 491

Query: 500 LLARAGCLSDAS---------------------GLAGK-----------LLEGMGPN--I 525
           + ++ G L  A                      G  GK           L  GM PN  I
Sbjct: 492 MYSKCGYLEAAQRCFNSITWKDVVSWGTLIAGYGFHGKGDIALEIYSEFLHFGMKPNHVI 551

Query: 526 WRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFLNSTSRDFG 572
           + A+LS C  H G  Q                  G+   +S  RDFG
Sbjct: 552 FLAVLSSCS-HNGMVQQ-----------------GLKIFSSMVRDFG 580


>gi|224087027|ref|XP_002308034.1| predicted protein [Populus trichocarpa]
 gi|222854010|gb|EEE91557.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  245 bits (625), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 157/488 (32%), Positives = 249/488 (51%), Gaps = 27/488 (5%)

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPYL------------ 115
           N  T V +L A + + ++ L   IHG ++K G E ++F G  L + Y             
Sbjct: 9   NEHTCVVILQACSDIGDVVLGEQIHGFVIKSGFEENVFVGTSLISMYSRSGNFDEAEKVF 68

Query: 116 --VSC------NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRA 167
             V C      N ++  +      ++A+ +F +    GL PN  T   +I  C     + 
Sbjct: 69  NGVGCKDLRCLNCMILEYGKAGYEKRAIGVFIYLISVGLDPNDYTFTNIISTCNVEEGKQ 128

Query: 168 LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
           L    HGL +K G++L  SV N+V+ MY     ++ A ++F  M  K++ISWT ++  + 
Sbjct: 129 L----HGLAVKYGVLLQTSVGNAVITMYGKNGMVEEAARMFSVMNKKNLISWTALISGYT 184

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
              Y   A+  F E+R   + CD+  L  ++   +   +L  G Q+H  V+  G   ++ 
Sbjct: 185 RNGYGEKAVDGFLELRGCGVECDSGLLATILDGCSECKNLDLGTQIHGLVIKLGYPCDIN 244

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
           +  ++I +Y+KC +  S+R+VFN ++ +S  S+ AI+ G+++N    E    F+   +  
Sbjct: 245 IGTALIDLYAKCKNFQSARTVFNGLSPRSTASFNAILVGFIENDSNEEDPMVFLSQLRLA 304

Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
               DS++   +L+ S   A+L     LH  + + GF  + SV N LI+ Y+KCG V+ A
Sbjct: 305 GIKPDSVSFSRLLSLSANRASLVKGRGLHAYSIKTGFAGHISVSNALITMYAKCGIVEDA 364

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
           Y  F  M    D +SWN II  Y ++G GE AL LY +M E G  PD  T L IL AC +
Sbjct: 365 YQAFNSMS-ANDCISWNAIISAYSLHGQGEKALLLYQEMEEKGFTPDEITILVILQACTY 423

Query: 468 AGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWR 527
           +GL+ DGL +FN M  +  ++P  EHY C+VDLL RAG LS A  +  +        +WR
Sbjct: 424 SGLSEDGLHLFNTMESKYGIQPLLEHYACMVDLLGRAGYLSQAMDIINRSPFSESTLLWR 483

Query: 528 ALLSGCVL 535
            L++ C L
Sbjct: 484 TLVNVCKL 491



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 111/443 (25%), Positives = 215/443 (48%), Gaps = 29/443 (6%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + L+S Y +SG   EAE +F+ +  K++   + +I  Y   G+ ++++  F +++  GL 
Sbjct: 49  TSLISMYSRSGNFDEAEKVFNGVGCKDLRCLNCMILEYGKAGYEKRAIGVFIYLISVGLD 108

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL----------------------ESDL 106
           PN +T   ++       N+E  + +HGL VK+G+                       + +
Sbjct: 109 PNDYTFTNIISTC----NVEEGKQLHGLAVKYGVLLQTSVGNAVITMYGKNGMVEEAARM 164

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           F  +    L+S  A+++G+  N   ++AV  F   RG G+  ++  + T++ GC    + 
Sbjct: 165 FSVMNKKNLISWTALISGYTRNGYGEKAVDGFLELRGCGVECDSGLLATILDGCSECKNL 224

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
            L   IHGL IKLG   D+++  +++D+Y+   +  +A  +F  +  +   S+  ++  F
Sbjct: 225 DLGTQIHGLVIKLGYPCDINIGTALIDLYAKCKNFQSARTVFNGLSPRSTASFNAILVGF 284

Query: 227 VDFEY-AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           ++ +    D +    ++R + I  D+V+   L+S++A    L +G+ LHA  +  G    
Sbjct: 285 IENDSNEEDPMVFLSQLRLAGIKPDSVSFSRLLSLSANRASLVKGRGLHAYSIKTGFAGH 344

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           + +SN++I MY+KCG ++ +   FN ++    +SW AIIS Y  +G   +AL  + +M +
Sbjct: 345 ISVSNALITMYAKCGIVEDAYQAFNSMSANDCISWNAIISAYSLHGQGEKALLLYQEM-E 403

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQL-HGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
           EK  + D IT++ IL A       E  L L + +  + G         C++    + G +
Sbjct: 404 EKGFTPDEITILVILQACTYSGLSEDGLHLFNTMESKYGIQPLLEHYACMVDLLGRAGYL 463

Query: 405 DLAYIVFEEMGFLRDVVSWNTII 427
             A  +     F    + W T++
Sbjct: 464 SQAMDIINRSPFSESTLLWRTLV 486



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 83/341 (24%), Positives = 161/341 (47%), Gaps = 27/341 (7%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           +++ Y K+G ++EA  +F  + +KN++SW+ +I GY+ NG+ EK++  F  +   G+  +
Sbjct: 148 VITMYGKNGMVEEAARMFSVMNKKNLISWTALISGYTRNGYGEKAVDGFLELRGCGVECD 207

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------------FE 108
           S  +  +L   +  +NL+L   IHGL++K G   D+                      F 
Sbjct: 208 SGLLATILDGCSECKNLDLGTQIHGLVIKLGYPCDINIGTALIDLYAKCKNFQSARTVFN 267

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLF-NFFRGSGLVPNAVTMLTVIRGCVALGSRA 167
           GL      S NAI+ GFI N   ++  ++F +  R +G+ P++V+   ++       S  
Sbjct: 268 GLSPRSTASFNAILVGFIENDSNEEDPMVFLSQLRLAGIKPDSVSFSRLLSLSANRASLV 327

Query: 168 LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
               +H  +IK G    +SV+N+++ MY+    ++ A Q F  M   D ISW  ++  + 
Sbjct: 328 KGRGLHAYSIKTGFAGHISVSNALITMYAKCGIVEDAYQAFNSMSANDCISWNAIISAYS 387

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG-GLQSEL 286
                  AL +++EM +     D + +L ++      G  + G  L   +    G+Q  L
Sbjct: 388 LHGQGEKALLLYQEMEEKGFTPDEITILVILQACTYSGLSEDGLHLFNTMESKYGIQPLL 447

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQ--ITEKSLVSWTAIIS 325
                ++ +  + G L  +  + N+   +E +L+ W  +++
Sbjct: 448 EHYACMVDLLGRAGYLSQAMDIINRSPFSESTLL-WRTLVN 487



 Score = 47.0 bits (110), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 42/73 (57%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ L++ Y K G +++A   F+ +   + +SW+ +I  YS++G  EK++  +  M   G 
Sbjct: 348 SNALITMYAKCGIVEDAYQAFNSMSANDCISWNAIISAYSLHGQGEKALLLYQEMEEKGF 407

Query: 68  LPNSFTMVGVLVA 80
            P+  T++ +L A
Sbjct: 408 TPDEITILVILQA 420


>gi|357148978|ref|XP_003574958.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 598

 Score =  245 bits (625), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 170/591 (28%), Positives = 290/591 (49%), Gaps = 64/591 (10%)

Query: 32  PEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELAR 91
           P   +  W+ +I   + +G + + ++ +  ++ +GL  ++ T   +  + A L+   L  
Sbjct: 6   PTSTLRHWNRLIQLAAASGSYSRCLRHYVPLLAAGLHGDASTFPSLAKSCAALRLPRLGC 65

Query: 92  SIHGLMVKFGLESD----------------------LFEGLKNPYLVSCNAIVAGFINNK 129
           S+H   +  G  SD                      LF+ + +P L+S N +V  +  + 
Sbjct: 66  SVHAHALLVGAASDVFVLTSLLDMYAKCACLPDARRLFDEMPSPTLISWNCMVTAYSKSS 125

Query: 130 LFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV-ALGSRALCELIHGLTIKLGLILDVSVN 188
              +AV +FN  RG G+ P+  T++ ++ G V +L +R     ++G ++K GL  D+ V 
Sbjct: 126 CVTEAVAMFNTMRGVGVRPSGATLVGLLSGRVDSLSTRNPGLCLYGYSMKSGLDTDLPVL 185

Query: 189 NSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIF---REMRKS 245
           NSVL M      L  A  +F  M  K V++W+ M+  F+     GD +K+F     M+ +
Sbjct: 186 NSVLTMLVRAGQLYDACLLFDSMHEKSVVTWSAMVSGFLQ---TGDYMKVFGLFNHMQTA 242

Query: 246 RIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSS 305
               D+VAL+NLIS   +LG+L   K +HA ++  G +SE  L +S++ +Y+KCGDL+++
Sbjct: 243 GYKFDSVALVNLISAAVLLGNLLVAKGVHALLIKSGFESEQDLMSSLVNLYAKCGDLEAA 302

Query: 306 RSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGE 365
           + VF+ +  K++V WT++ISGY + G   +AL  F  M     +  +  T+ S+L+A   
Sbjct: 303 QEVFDAVHRKNVVLWTSMISGYAEGGHPDKALKMFDSMLCTDVEP-NEATVSSVLSACAN 361

Query: 366 LAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFL-RDVVSWN 424
           L +     ++       G  +   V   LI +Y KCGNV LA  +F+ +    RD+  W+
Sbjct: 362 LGSANQAKKVEDHVVAIGLQKDLRVATGLIDTYCKCGNVTLAREIFDGVTTTNRDLAIWS 421

Query: 425 TIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEE 484
            +I GY   G G  AL L+++M   G  PD+  +  +L AC ++GL ++GL  F  +  E
Sbjct: 422 AMINGYACIGEGSEALVLFNEMQNQGVQPDAIVFTHLLTACNYSGLVDEGLQCFRSLTVE 481

Query: 485 NKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSG------------ 532
             ++PS EHY C +DLL +AG LS A     K+   +   +   +L+             
Sbjct: 482 YGIEPSIEHYMCTIDLLCKAGHLSAAKEFFRKIPIQLQNQVLAPILTAYSAHCADSSIEL 541

Query: 533 ---------------CVLH------VGRFQDAEALRSGSQKKGIIKIPGIS 562
                          CVL       +G+++ A   R    K+G++K PG S
Sbjct: 542 VSEELLNLEPHNSDHCVLMANMLNCLGKWKKATDYRRLITKQGLVKEPGRS 592



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 114/437 (26%), Positives = 214/437 (48%), Gaps = 27/437 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + LL  Y K   + +A  LFDE+P   ++SW+ ++  YS +    +++  F+ M 
Sbjct: 79  DVFVLTSLLDMYAKCACLPDARRLFDEMPSPTLISWNCMVTAYSKSSCVTEAVAMFNTMR 138

Query: 64  LSGLLPNSFTMVGVLVAAA-GLQNLELARSIHGLMVKFGLESD----------------- 105
             G+ P+  T+VG+L      L        ++G  +K GL++D                 
Sbjct: 139 GVGVRPSGATLVGLLSGRVDSLSTRNPGLCLYGYSMKSGLDTDLPVLNSVLTMLVRAGQL 198

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                LF+ +    +V+ +A+V+GF+    + +   LFN  + +G   ++V ++ +I   
Sbjct: 199 YDACLLFDSMHEKSVVTWSAMVSGFLQTGDYMKVFGLFNHMQTAGYKFDSVALVNLISAA 258

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
           V LG+  + + +H L IK G   +  + +S++++Y+   DL+AA ++F  +  K+V+ WT
Sbjct: 259 VLLGNLLVAKGVHALLIKSGFESEQDLMSSLVNLYAKCGDLEAAQEVFDAVHRKNVVLWT 318

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+  + +  +   ALK+F  M  + +  +   + +++S  A LG   + K++   VV  
Sbjct: 319 SMISGYAEGGHPDKALKMFDSMLCTDVEPNEATVSSVLSACANLGSANQAKKVEDHVVAI 378

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQI--TEKSLVSWTAIISGYVQNGCAREALN 338
           GLQ +LR++  +I  Y KCG++  +R +F+ +  T + L  W+A+I+GY   G   EAL 
Sbjct: 379 GLQKDLRVATGLIDTYCKCGNVTLAREIFDGVTTTNRDLAIWSAMINGYACIGEGSEALV 438

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQ-LHGIAFEAGFPRYRSVQNCLISS 397
            F +M+ +     D+I    +LTA      ++  LQ    +  E G         C I  
Sbjct: 439 LFNEMQNQGVQP-DAIVFTHLLTACNYSGLVDEGLQCFRSLTVEYGIEPSIEHYMCTIDL 497

Query: 398 YSKCGNVDLAYIVFEEM 414
             K G++  A   F ++
Sbjct: 498 LCKAGHLSAAKEFFRKI 514


>gi|225463424|ref|XP_002272240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Vitis vinifera]
          Length = 629

 Score =  245 bits (625), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 163/557 (29%), Positives = 266/557 (47%), Gaps = 67/557 (12%)

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFG-LESDL-FEGLKNPY------------- 114
           N  T +  L A+A  +NL   + IH  M+  G L S L    L N Y             
Sbjct: 36  NLTTCIASLQASAHHKNLSKGKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALSIF 95

Query: 115 --------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
                   + + NAI++GFI N   ++    +   R  G++P+  T    I+ C+ +   
Sbjct: 96  SDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDVLE- 154

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
              + IHGL  K GL LDV + +++++ Y     ++ A   F E+  +DV+ W  M+  +
Sbjct: 155 --IKKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGY 212

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
                    L+ FR M    ++     +  ++SV A++GDL  G+ +H   +  G  S +
Sbjct: 213 AQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGV 272

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            +SNS+I MY KC  ++ +  +F  + EK + SW +I+S + Q G     L    +M   
Sbjct: 273 AVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGA 332

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS------VQNCLISSYSK 400
                D +T+ ++L A   LAAL    ++HG    +G  +         ++N +I  Y+K
Sbjct: 333 GIQP-DLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAK 391

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CG++  A++VFE M   +DV SWN +I GYG++G+G  AL ++ +M E    PD  T++ 
Sbjct: 392 CGSMRDAHLVFERMSN-KDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVG 450

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           +L+AC HAG  + G     QM  +  V P+ EHY CV+D+L RAG L +A  LA  +   
Sbjct: 451 VLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIE 510

Query: 521 MGPNIWRALLSGCVLH---------------------------------VGRFQDAEALR 547
             P +WRALL+ C LH                                 VGR+++   +R
Sbjct: 511 ANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVR 570

Query: 548 SGSQKKGIIKIPGISFL 564
              +++ + K PG S++
Sbjct: 571 HTMRQQNVRKTPGCSWI 587



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 135/518 (26%), Positives = 243/518 (46%), Gaps = 43/518 (8%)

Query: 5   PYNSSKLLSNYFKSGKIKEAENLF-DEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           P + + L++ Y K  ++  A ++F D   E NV +++ +I G+  NGF E+  + +  M 
Sbjct: 72  PLSITSLINMYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMR 131

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPYL------ 115
             G++P+ FT    + A   L  LE+ + IHGL+ KFGLE D+F G  L N YL      
Sbjct: 132 NEGVIPDKFTFPCAIKAC--LDVLEI-KKIHGLLFKFGLELDVFIGSALVNCYLKFGLME 188

Query: 116 --------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                         V  NA+V G+     F+  +  F       +VP+  T+  V+    
Sbjct: 189 HAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFA 248

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            +G      +IHG  +K+G    V+V+NS++DMY     ++ A++IF  M  KD+ SW  
Sbjct: 249 VMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNS 308

Query: 222 MMGLFVDFEYAGD---ALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           ++ +    E  GD    L++   M  + I  D V +  ++   + L  L  G+++H  ++
Sbjct: 309 IVSV---HEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMI 365

Query: 279 LGGLQ------SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC 332
           + GL        ++ L N++I MY+KCG +  +  VF +++ K + SW  +I GY  +G 
Sbjct: 366 VSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGY 425

Query: 333 AREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN 392
             EAL  F +M + +    D +T V +L+A      +        +  ++ +    ++++
Sbjct: 426 GNEALEMFSRMCEVQLKP-DEVTFVGVLSACSHAGFVSQGRNFL-VQMKSKYDVAPTIEH 483

Query: 393 --CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
             C+I    + G +D AY +   M    + V W  ++    ++ H   A     ++ E  
Sbjct: 484 YTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFEL- 542

Query: 451 EVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVK 488
           E     +Y+ + N  G  G   + L + + M ++N  K
Sbjct: 543 EPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRK 580



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 95/359 (26%), Positives = 170/359 (47%), Gaps = 40/359 (11%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  S L++ Y K G ++ A+  F+E+P ++VV W+ +++GY+  G  E  ++ F  M
Sbjct: 169 LDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRM 228

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES------------------ 104
               ++P+ FT+ GVL   A + +L   R IHG  +K G +S                  
Sbjct: 229 NDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCI 288

Query: 105 ----DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
               ++FE ++   + S N+IV+           + L +   G+G+ P+ VT+ TV+  C
Sbjct: 289 EDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPAC 348

Query: 161 VALGSRALCELIHGLTIKLGL------ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
             L +      IHG  I  GL      I DV + N+V+DMY+    +  A  +F  M  K
Sbjct: 349 SHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNK 408

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
           DV SW  M+  +    Y  +AL++F  M + ++  D V  + ++S  +  G + +G+   
Sbjct: 409 DVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFL 468

Query: 275 AQVVLGGLQSELRLSNSI------IAMYSKCGDLDSSRSV-FNQITEKSLVSWTAIISG 326
            Q     ++S+  ++ +I      I M  + G LD +  +      E + V W A+++ 
Sbjct: 469 VQ-----MKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAA 522


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  245 bits (625), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 152/504 (30%), Positives = 262/504 (51%), Gaps = 45/504 (8%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F+ +    LV+   ++  F      + A+ LF     SG VP+  T  +V+  C  LG 
Sbjct: 12  VFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGL 71

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYS-CLMD--LDAAIQIFREMECKDVISWTRM 222
            AL + +H   I+LGL LDV V  S++DMY+ C  D  +D + ++F +M   +V+SWT +
Sbjct: 72  LALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAI 131

Query: 223 MGLFVDF-EYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           +  +    E   +A+++F +M    I  +  +  +++     L D   G+Q+++  V  G
Sbjct: 132 ITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLG 191

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           + S   + NS+I+MY++ G ++ +R  F+ + EK+LVS+ AI+ GY +N  + EA   F 
Sbjct: 192 IASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLF- 250

Query: 342 KMRQEKTDS---VDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
               E  D+   + + T  S+L+ +  + A+    Q+HG   + G+   + + N LIS Y
Sbjct: 251 ---NEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMY 307

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
           S+CGN++ A+ VF EM   R+V+SW ++I G+  +G    AL ++HKM ETG  P+  TY
Sbjct: 308 SRCGNIEAAFQVFNEMED-RNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITY 366

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
           +++L+AC H G+ ++G   FN M +E+ + P  EHY C+VDLL R+G L +A      + 
Sbjct: 367 VAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMP 426

Query: 519 EGMGPNIWRALLSGCVLH---------------------------------VGRFQDAEA 545
                 +WR LL  C +H                                  G+++D   
Sbjct: 427 LMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVK 486

Query: 546 LRSGSQKKGIIKIPGISFLNSTSR 569
           +R   +++ +IK  G S++   +R
Sbjct: 487 IRKSMKERNLIKEAGCSWIEVENR 510



 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 126/496 (25%), Positives = 244/496 (49%), Gaps = 33/496 (6%)

Query: 24  AENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAG 83
           A  +FD++PE+N+V+W+++I  ++  G    ++  F  M LSG +P+ FT   VL A   
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68

Query: 84  LQNLELARSIHGLMVKFGLESDL-------------------------FEGLKNPYLVSC 118
           L  L L + +H  +++ GL  D+                         FE +    ++S 
Sbjct: 69  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 128

Query: 119 NAIVAGFINN-KLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTI 177
            AI+  +  + +  ++A+ LF       + PN  +  +V++ C  L      E ++   +
Sbjct: 129 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAV 188

Query: 178 KLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALK 237
           KLG+     V NS++ MY+    ++ A + F  +  K+++S+  ++  +     + +A  
Sbjct: 189 KLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFL 248

Query: 238 IFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYS 297
           +F E+  + I        +L+S  A +G + +G+Q+H +++ GG +S   + N++I+MYS
Sbjct: 249 LFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYS 308

Query: 298 KCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLV 357
           +CG+++++  VFN++ +++++SWT++I+G+ ++G A  AL  F KM +  T   + IT V
Sbjct: 309 RCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKP-NEITYV 367

Query: 358 SILTASGELAAL-EICLQLHGIAFEAGF-PRYRSVQNCLISSYSKCGNVDLAYIVFEEMG 415
           ++L+A   +  + E     + +  E G  PR      C++    + G +  A      M 
Sbjct: 368 AVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYA-CMVDLLGRSGLLVEAMEFINSMP 426

Query: 416 FLRDVVSWNTIIYGYGVNGHGETALALY-HKMTETGEVPDSSTYLSILNACGHAGLTNDG 474
            + D + W T++    V  HG T L  +  +M    E  D + Y+ + N    AG   D 
Sbjct: 427 LMADALVWRTLLGACRV--HGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDV 484

Query: 475 LVIFNQMIEENKVKPS 490
           + I   M E N +K +
Sbjct: 485 VKIRKSMKERNLIKEA 500



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 143/277 (51%), Gaps = 23/277 (8%)

Query: 19  GKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEK-SMKAFSHMMLSGLLPNSFTMVGV 77
           G + ++  +F+++PE NV+SW+ +I  Y+ +G  +K +++ F  M+   + PN F+   V
Sbjct: 108 GSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSV 167

Query: 78  LVAAAGLQNLELARSIHGLMVKFGLES----------------------DLFEGLKNPYL 115
           L A   L +      ++   VK G+ S                        F+ L    L
Sbjct: 168 LKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNL 227

Query: 116 VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGL 175
           VS NAIV G+  N   ++A LLFN    +G+  +A T  +++ G  ++G+    E IHG 
Sbjct: 228 VSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGR 287

Query: 176 TIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDA 235
            +K G   +  + N+++ MYS   +++AA Q+F EME ++VISWT M+  F    +A  A
Sbjct: 288 LLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRA 347

Query: 236 LKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQ 272
           L++F +M ++    + +  + ++S  + +G +  G++
Sbjct: 348 LEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQK 384



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 90/176 (51%), Gaps = 22/176 (12%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+S Y +SG++++A   FD + EKN+VS++ ++ GY+ N   E++   F+ +  +G+  +
Sbjct: 202 LISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGIS 261

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFE 108
           +FT   +L  AA +  +     IHG ++K G +S+                      +F 
Sbjct: 262 AFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFN 321

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
            +++  ++S  +++ GF  +    +A+ +F+    +G  PN +T + V+  C  +G
Sbjct: 322 EMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVG 377


>gi|334185093|ref|NP_187175.2| mitochondrial editing factor 19 [Arabidopsis thaliana]
 gi|218546759|sp|Q9MA95.2|PP214_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g05240
 gi|332640689|gb|AEE74210.1| mitochondrial editing factor 19 [Arabidopsis thaliana]
          Length = 565

 Score =  245 bits (625), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 142/462 (30%), Positives = 247/462 (53%), Gaps = 28/462 (6%)

Query: 86  NLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSG 145
           NL  ARS+             FE +  P +   N+++ G+ N+    +A++ +      G
Sbjct: 56  NLSYARSV-------------FESIDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKG 102

Query: 146 LVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAI 205
             P+  T   V++ C  L        +HG  +K G  +++ V+  +L MY C  +++  +
Sbjct: 103 YSPDYFTFPYVLKACSGLRDIQFGSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGL 162

Query: 206 QIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILG 265
           ++F ++   +V++W  ++  FV+     DA++ FREM+ + +  +   +++L+       
Sbjct: 163 RVFEDIPQWNVVAWGSLISGFVNNNRFSDAIEAFREMQSNGVKANETIMVDLLVACGRCK 222

Query: 266 DLKRGKQLHAQVVLGGL------QSELR----LSNSIIAMYSKCGDLDSSRSVFNQITEK 315
           D+  GK  H    L GL      QS++     L+ S+I MY+KCGDL ++R +F+ + E+
Sbjct: 223 DIVTGKWFHG--FLQGLGFDPYFQSKVGFNVILATSLIDMYAKCGDLRTARYLFDGMPER 280

Query: 316 SLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQL 375
           +LVSW +II+GY QNG A EAL  F+ M      + D +T +S++ AS      ++   +
Sbjct: 281 TLVSWNSIITGYSQNGDAEEALCMFLDMLDLGI-APDKVTFLSVIRASMIQGCSQLGQSI 339

Query: 376 HGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGH 435
           H    + GF +  ++   L++ Y+K G+ + A   FE++   +D ++W  +I G   +GH
Sbjct: 340 HAYVSKTGFVKDAAIVCALVNMYAKTGDAESAKKAFEDLE-KKDTIAWTVVIIGLASHGH 398

Query: 436 GETALALYHKMTETGE-VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY 494
           G  AL+++ +M E G   PD  TYL +L AC H GL  +G   F +M + + ++P+ EHY
Sbjct: 399 GNEALSIFQRMQEKGNATPDGITYLGVLYACSHIGLVEEGQRYFAEMRDLHGLEPTVEHY 458

Query: 495 GCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
           GC+VD+L+RAG   +A  L   +      NIW ALL+GC +H
Sbjct: 459 GCMVDILSRAGRFEEAERLVKTMPVKPNVNIWGALLNGCDIH 500



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 121/495 (24%), Positives = 225/495 (45%), Gaps = 44/495 (8%)

Query: 24  AENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAG 83
           A ++F+ I   +V  W+ +I GYS +   +K++  +  M+  G  P+ FT   VL A +G
Sbjct: 60  ARSVFESIDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSG 119

Query: 84  LQNLELARSIHGLMVKFGLESDL----------------------FEGLKNPYLVSCNAI 121
           L++++    +HG +VK G E ++                      FE +    +V+  ++
Sbjct: 120 LRDIQFGSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSL 179

Query: 122 VAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGL 181
           ++GF+NN  F  A+  F   + +G+  N   M+ ++  C         +  HG    LG 
Sbjct: 180 ISGFVNNNRFSDAIEAFREMQSNGVKANETIMVDLLVACGRCKDIVTGKWFHGFLQGLGF 239

Query: 182 I--------LDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAG 233
                     +V +  S++DMY+   DL  A  +F  M  + ++SW  ++  +     A 
Sbjct: 240 DPYFQSKVGFNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAE 299

Query: 234 DALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSII 293
           +AL +F +M    I  D V  L++I  + I G  + G+ +HA V   G   +  +  +++
Sbjct: 300 EALCMFLDMLDLGIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCALV 359

Query: 294 AMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDS 353
            MY+K GD +S++  F  + +K  ++WT +I G   +G   EAL+ F +M+++   + D 
Sbjct: 360 NMYAKTGDAESAKKAFEDLEKKDTIAWTVVIIGLASHGHGNEALSIFQRMQEKGNATPDG 419

Query: 354 ITLVSILTASGELAALEICLQ-------LHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
           IT + +L A   +  +E   +       LHG+  E     Y     C++   S+ G  + 
Sbjct: 420 ITYLGVLYACSHIGLVEEGQRYFAEMRDLHGL--EPTVEHY----GCMVDILSRAGRFEE 473

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           A  + + M    +V  W  ++ G  ++ + E    +   + E  E+  S  Y+ + N   
Sbjct: 474 AERLVKTMPVKPNVNIWGALLNGCDIHENLELTDRIRSMVAEPEEL-GSGIYVLLSNIYA 532

Query: 467 HAGLTNDGLVIFNQM 481
            AG   D  +I   M
Sbjct: 533 KAGRWADVKLIRESM 547



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 114/412 (27%), Positives = 200/412 (48%), Gaps = 18/412 (4%)

Query: 166 RALCEL--IHGLTIKLGLILDVSVNNSVLDMYSC---LMDLDAAIQIFREMECKDVISWT 220
           R+L EL  +HGL IK  +I +V   + ++D  +     M+L  A  +F  ++C  V  W 
Sbjct: 17  RSLVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDCPSVYIWN 76

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+  + +      AL  ++EM +     D      ++   + L D++ G  +H  VV  
Sbjct: 77  SMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSCVHGFVVKT 136

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           G +  + +S  ++ MY  CG+++    VF  I + ++V+W ++ISG+V N    +A+  F
Sbjct: 137 GFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNNRFSDAIEAF 196

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGF-PRYRS-------VQN 392
            +M+     + ++I +V +L A G    +      HG     GF P ++S       +  
Sbjct: 197 REMQSNGVKANETI-MVDLLVACGRCKDIVTGKWFHGFLQGLGFDPYFQSKVGFNVILAT 255

Query: 393 CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV 452
            LI  Y+KCG++  A  +F+ M   R +VSWN+II GY  NG  E AL ++  M + G  
Sbjct: 256 SLIDMYAKCGDLRTARYLFDGMP-ERTLVSWNSIITGYSQNGDAEEALCMFLDMLDLGIA 314

Query: 453 PDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASG 512
           PD  T+LS++ A    G +  G  I   + +   VK +      +V++ A+ G  ++++ 
Sbjct: 315 PDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAA-IVCALVNMYAKTG-DAESAK 372

Query: 513 LAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFL 564
            A + LE      W  ++ G   H G   +A ++    Q+KG     GI++L
Sbjct: 373 KAFEDLEKKDTIAWTVVIIGLASH-GHGNEALSIFQRMQEKGNATPDGITYL 423



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 171/357 (47%), Gaps = 33/357 (9%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           ++ Y S+ LL  Y   G++     +F++IP+ NVV+W  +I G+  N     +++AF  M
Sbjct: 140 VNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNNRFSDAIEAFREM 199

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES------------------ 104
             +G+  N   MV +LVA    +++   +  HG +   G +                   
Sbjct: 200 QSNGVKANETIMVDLLVACGRCKDIVTGKWFHGFLQGLGFDPYFQSKVGFNVILATSLID 259

Query: 105 ------------DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVT 152
                        LF+G+    LVS N+I+ G+  N   ++A+ +F      G+ P+ VT
Sbjct: 260 MYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMFLDMLDLGIAPDKVT 319

Query: 153 MLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME 212
            L+VIR  +  G   L + IH    K G + D ++  ++++MY+   D ++A + F ++E
Sbjct: 320 FLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCALVNMYAKTGDAESAKKAFEDLE 379

Query: 213 CKDVISWTRMMGLFVDFEYAGDALKIFREMR-KSRIICDTVALLNLISVNAILGDLKRGK 271
            KD I+WT ++       +  +AL IF+ M+ K     D +  L ++   + +G ++ G+
Sbjct: 380 KKDTIAWTVVIIGLASHGHGNEALSIFQRMQEKGNATPDGITYLGVLYACSHIGLVEEGQ 439

Query: 272 QLHAQVV-LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVS-WTAIISG 326
           +  A++  L GL+  +     ++ + S+ G  + +  +   +  K  V+ W A+++G
Sbjct: 440 RYFAEMRDLHGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMPVKPNVNIWGALLNG 496


>gi|18409250|ref|NP_564961.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75168871|sp|Q9C507.1|PP111_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial; Flags: Precursor
 gi|12325094|gb|AAG52503.1|AC018364_21 hypothetical protein; 27026-24663 [Arabidopsis thaliana]
 gi|12597785|gb|AAG60097.1|AC073178_8 PPR-repeat protein, putative [Arabidopsis thaliana]
 gi|332196793|gb|AEE34914.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 787

 Score =  245 bits (625), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 156/556 (28%), Positives = 295/556 (53%), Gaps = 28/556 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D    + LL  Y ++G + +AE +FD +P +++V+WS ++     NG   K+++ F  M+
Sbjct: 135 DAVIETSLLCMYGQTGNLSDAEKVFDGMPVRDLVAWSTLVSSCLENGEVVKALRMFKCMV 194

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK--FGLESDL--------------- 106
             G+ P++ TM+ V+   A L  L +ARS+HG + +  F L+  L               
Sbjct: 195 DDGVEPDAVTMISVVEGCAELGCLRIARSVHGQITRKMFDLDETLCNSLLTMYSKCGDLL 254

Query: 107 -----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                FE +     VS  A+++ +   +  ++A+  F+    SG+ PN VT+ +V+  C 
Sbjct: 255 SSERIFEKIAKKNAVSWTAMISSYNRGEFSEKALRSFSEMIKSGIEPNLVTLYSVLSSCG 314

Query: 162 ALGSRALCELIHGLTIKLGLILDV-SVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
            +G     + +HG  ++  L  +  S++ +++++Y+    L     + R +  +++++W 
Sbjct: 315 LIGLIREGKSVHGFAVRRELDPNYESLSLALVELYAECGKLSDCETVLRVVSDRNIVAWN 374

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++ L+        AL +FR+M   RI  D   L + IS     G +  GKQ+H  V+  
Sbjct: 375 SLISLYAHRGMVIQALGLFRQMVTQRIKPDAFTLASSISACENAGLVPLGKQIHGHVIRT 434

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
            +  E  + NS+I MYSK G +DS+ +VFNQI  +S+V+W +++ G+ QNG + EA++ F
Sbjct: 435 DVSDEF-VQNSLIDMYSKSGSVDSASTVFNQIKHRSVVTWNSMLCGFSQNGNSVEAISLF 493

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
             M     + ++ +T ++++ A   + +LE    +H     +G     +    LI  Y+K
Sbjct: 494 DYMYHSYLE-MNEVTFLAVIQACSSIGSLEKGKWVHHKLIISGLKDLFT-DTALIDMYAK 551

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CG+++ A  VF  M     V   +++I  YG++G   +A++ +++M E+G  P+   +++
Sbjct: 552 CGDLNAAETVFRAMSSRSIVSW-SSMINAYGMHGRIGSAISTFNQMVESGTKPNEVVFMN 610

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           +L+ACGH+G   +G   FN M +   V P+ EH+ C +DLL+R+G L +A     ++   
Sbjct: 611 VLSACGHSGSVEEGKYYFNLM-KSFGVSPNSEHFACFIDLLSRSGDLKEAYRTIKEMPFL 669

Query: 521 MGPNIWRALLSGCVLH 536
              ++W +L++GC +H
Sbjct: 670 ADASVWGSLVNGCRIH 685



 Score =  195 bits (496), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 138/507 (27%), Positives = 251/507 (49%), Gaps = 35/507 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           DP   +KL+ +Y   G    +  +F+  P  +   + ++I         + ++  +  ++
Sbjct: 33  DPLPVTKLIESYAFMGSPDSSRLVFEAFPYPDSFMYGVLIKCNVWCHLLDAAIDLYHRLV 92

Query: 64  LSGLLPNSFTMVGVLVAAAG-LQNLELARSIHGLMVKFGLESD----------------- 105
                 + F    VL A AG  ++L +   +HG ++K G++ D                 
Sbjct: 93  SETTQISKFVFPSVLRACAGSREHLSVGGKVHGRIIKGGVDDDAVIETSLLCMYGQTGNL 152

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +F+G+    LV+ + +V+  + N    +A+ +F      G+ P+AVTM++V+ GC
Sbjct: 153 SDAEKVFDGMPVRDLVAWSTLVSSCLENGEVVKALRMFKCMVDDGVEPDAVTMISVVEGC 212

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             LG   +   +HG   +    LD ++ NS+L MYS   DL ++ +IF ++  K+ +SWT
Sbjct: 213 AELGCLRIARSVHGQITRKMFDLDETLCNSLLTMYSKCGDLLSSERIFEKIAKKNAVSWT 272

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+  +   E++  AL+ F EM KS I  + V L +++S   ++G ++ GK +H   V  
Sbjct: 273 AMISSYNRGEFSEKALRSFSEMIKSGIEPNLVTLYSVLSSCGLIGLIREGKSVHGFAVRR 332

Query: 281 GLQSELR-LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            L      LS +++ +Y++CG L    +V   ++++++V+W ++IS Y   G   +AL  
Sbjct: 333 ELDPNYESLSLALVELYAECGKLSDCETVLRVVSDRNIVAWNSLISLYAHRGMVIQALGL 392

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           F +M  ++    D+ TL S ++A      + +  Q+HG            VQN LI  YS
Sbjct: 393 FRQMVTQRIKP-DAFTLASSISACENAGLVPLGKQIHGHVIRTDVSD-EFVQNSLIDMYS 450

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALAL----YHKMTETGEVPDS 455
           K G+VD A  VF ++   R VV+WN+++ G+  NG+   A++L    YH   E  EV   
Sbjct: 451 KSGSVDSASTVFNQIKH-RSVVTWNSMLCGFSQNGNSVEAISLFDYMYHSYLEMNEV--- 506

Query: 456 STYLSILNACGHAGLTNDGLVIFNQMI 482
            T+L+++ AC   G    G  + +++I
Sbjct: 507 -TFLAVIQACSSIGSLEKGKWVHHKLI 532



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 127/485 (26%), Positives = 251/485 (51%), Gaps = 30/485 (6%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D    + LL+ Y K G +  +E +F++I +KN VSW+ +I  Y+   F EK++++FS M
Sbjct: 235 LDETLCNSLLTMYSKCGDLLSSERIFEKIAKKNAVSWTAMISSYNRGEFSEKALRSFSEM 294

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGL------------ 110
           + SG+ PN  T+  VL +   +  +   +S+HG  V+  L+ + +E L            
Sbjct: 295 IKSGIEPNLVTLYSVLSSCGLIGLIREGKSVHGFAVRRELDPN-YESLSLALVELYAECG 353

Query: 111 ------------KNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                        +  +V+ N++++ + +  +  QA+ LF       + P+A T+ + I 
Sbjct: 354 KLSDCETVLRVVSDRNIVAWNSLISLYAHRGMVIQALGLFRQMVTQRIKPDAFTLASSIS 413

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C   G   L + IHG  I+   + D  V NS++DMYS    +D+A  +F +++ + V++
Sbjct: 414 ACENAGLVPLGKQIHGHVIRTD-VSDEFVQNSLIDMYSKSGSVDSASTVFNQIKHRSVVT 472

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           W  M+  F     + +A+ +F  M  S +  + V  L +I   + +G L++GK +H +++
Sbjct: 473 WNSMLCGFSQNGNSVEAISLFDYMYHSYLEMNEVTFLAVIQACSSIGSLEKGKWVHHKLI 532

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
           + GL+ +L    ++I MY+KCGDL+++ +VF  ++ +S+VSW+++I+ Y  +G    A++
Sbjct: 533 ISGLK-DLFTDTALIDMYAKCGDLNAAETVFRAMSSRSIVSWSSMINAYGMHGRIGSAIS 591

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
            F +M +  T   + +  +++L+A G   ++E       +    G         C I   
Sbjct: 592 TFNQMVESGTKP-NEVVFMNVLSACGHSGSVEEGKYYFNLMKSFGVSPNSEHFACFIDLL 650

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
           S+ G++  AY   +EM FL D   W +++ G  ++   +   A+ + +++   V D + Y
Sbjct: 651 SRSGDLKEAYRTIKEMPFLADASVWGSLVNGCRIHQKMDIIKAIKNDLSDI--VTDDTGY 708

Query: 459 LSILN 463
            ++L+
Sbjct: 709 YTLLS 713



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 119/438 (27%), Positives = 211/438 (48%), Gaps = 25/438 (5%)

Query: 106 LFEGLKNP------YLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
           +FE    P       L+ CN          L   A+ L++         +     +V+R 
Sbjct: 56  VFEAFPYPDSFMYGVLIKCNVWC------HLLDAAIDLYHRLVSETTQISKFVFPSVLRA 109

Query: 160 CVALGSRALCEL---IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
           C   GSR    +   +HG  IK G+  D  +  S+L MY    +L  A ++F  M  +D+
Sbjct: 110 CA--GSREHLSVGGKVHGRIIKGGVDDDAVIETSLLCMYGQTGNLSDAEKVFDGMPVRDL 167

Query: 217 ISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQ 276
           ++W+ ++   ++      AL++F+ M    +  D V +++++   A LG L+  + +H Q
Sbjct: 168 VAWSTLVSSCLENGEVVKALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARSVHGQ 227

Query: 277 VVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
           +       +  L NS++ MYSKCGDL SS  +F +I +K+ VSWTA+IS Y +   + +A
Sbjct: 228 ITRKMFDLDETLCNSLLTMYSKCGDLLSSERIFEKIAKKNAVSWTAMISSYNRGEFSEKA 287

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGF-PRYRSVQNCLI 395
           L  F +M +   +  + +TL S+L++ G +  +     +HG A      P Y S+   L+
Sbjct: 288 LRSFSEMIKSGIEP-NLVTLYSVLSSCGLIGLIREGKSVHGFAVRRELDPNYESLSLALV 346

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
             Y++CG +     V   +   R++V+WN++I  Y   G    AL L+ +M      PD+
Sbjct: 347 ELYAECGKLSDCETVLRVVSD-RNIVAWNSLISLYAHRGMVIQALGLFRQMVTQRIKPDA 405

Query: 456 STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEH-YGCVVDLLARAGCLSDASGLA 514
            T  S ++AC +AGL   G  I   +I   +   S E     ++D+ +++G +  AS + 
Sbjct: 406 FTLASSISACENAGLVPLGKQIHGHVI---RTDVSDEFVQNSLIDMYSKSGSVDSASTVF 462

Query: 515 GKLLEGMGPNIWRALLSG 532
            + ++      W ++L G
Sbjct: 463 NQ-IKHRSVVTWNSMLCG 479


>gi|225464633|ref|XP_002274427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
           chloroplastic [Vitis vinifera]
 gi|302143764|emb|CBI22625.3| unnamed protein product [Vitis vinifera]
          Length = 880

 Score =  245 bits (625), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 155/556 (27%), Positives = 285/556 (51%), Gaps = 26/556 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           +P   S L+  Y K G  +EA  +F+ +   ++VSW++++  +   G   ++++ +  M+
Sbjct: 150 NPVLGSALIDFYSKCGCTQEAYRVFEYMNNGDIVSWTMMVSSFVEAGSWSQALQLYHRMI 209

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF------------EGLK 111
            +G+ PN FT V +L AA+    L   + +H  ++ + +E +L             + ++
Sbjct: 210 QTGVAPNEFTFVKLL-AASSFLGLNYGKLVHAHLMMWRIELNLVLKTALVDMYCKCQSIE 268

Query: 112 NPYLVS----------CNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
           +   VS            AI++GF  +  F++A+  F+    SG+VPN  T   ++  C 
Sbjct: 269 DAVKVSKLTLEYDVFLWTAIISGFTQSLKFREAITAFHEMETSGVVPNNFTYSGILNACS 328

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMY-SCLMDLDAAIQIFREMECKDVISWT 220
           ++ +  L + IH   +  GL  DVSV NS++DMY  C   ++ A++ FR +   +VISWT
Sbjct: 329 SILALDLGKQIHSRVVMAGLENDVSVGNSLVDMYMKCSNMIEDAVRAFRGIASPNVISWT 388

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++  F +     +++K+F  M+   +  ++  L  ++     +  L + ++LH  ++  
Sbjct: 389 SLIAGFSEHGLEEESIKVFGAMQGVGVRPNSFTLSTILGACGTIKSLTQTRKLHGYIIKN 448

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
              +++ + N+++  Y+  G +D +  V + +  + ++++T++ +   Q G    ALN  
Sbjct: 449 NADNDVVVGNALVDAYAGLGMVDDAWHVTSMMKHRDVITYTSLATRINQTGNHEMALNII 508

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
             M ++    +D  +L S L+A+  +  +E   QLH  + ++G   + SV N L+  Y K
Sbjct: 509 THMNKDDV-RMDGFSLASFLSAAAGIPIMETGKQLHCYSVKSGLGSWISVSNGLVDLYGK 567

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CG +  A+  F E+    D VSWN +I+G   NGH  +AL+ +  M   G  PD  T L 
Sbjct: 568 CGCIHDAHRSFLEIT-EPDAVSWNGLIFGLASNGHVSSALSAFEDMRLAGVEPDQITCLL 626

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           +L AC H GL + GL  F  M E++ ++P  +HY C+VDLL RAG L +A  +   +   
Sbjct: 627 VLYACSHGGLVDMGLDYFQSMREKHGIRPQLDHYVCLVDLLGRAGRLEEAMNVIETMPFK 686

Query: 521 MGPNIWRALLSGCVLH 536
               I++ LL  C LH
Sbjct: 687 PDALIYKTLLGACKLH 702



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 147/559 (26%), Positives = 267/559 (47%), Gaps = 42/559 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + S+ LLS Y K   + EA  LFDE+P ++V SW++++  Y   G HE++++ F  M+
Sbjct: 49  DMFLSNNLLSLYGKCFGVAEARQLFDEMPCRDVASWTMLMSAYGKIGNHEEALELFDSML 108

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
           +SG  PN FT+   L + + L+          L+ K G +S+                  
Sbjct: 109 ISGEYPNEFTLSTALRSCSALREFNHGTRFQALVTKSGFDSNPVLGSALIDFYSKCGCTQ 168

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +FE + N  +VS   +V+ F+    + QA+ L++    +G+ PN  T + ++    
Sbjct: 169 EAYRVFEYMNNGDIVSWTMMVSSFVEAGSWSQALQLYHRMIQTGVAPNEFTFVKLLAASS 228

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            LG     +L+H   +   + L++ +  +++DMY     ++ A+++ +     DV  WT 
Sbjct: 229 FLGLN-YGKLVHAHLMMWRIELNLVLKTALVDMYCKCQSIEDAVKVSKLTLEYDVFLWTA 287

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++  F       +A+  F EM  S ++ +      +++  + +  L  GKQ+H++VV+ G
Sbjct: 288 IISGFTQSLKFREAITAFHEMETSGVVPNNFTYSGILNACSSILALDLGKQIHSRVVMAG 347

Query: 282 LQSELRLSNSIIAMYSKCGDL--DSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
           L++++ + NS++ MY KC ++  D+ R+ F  I   +++SWT++I+G+ ++G   E++  
Sbjct: 348 LENDVSVGNSLVDMYMKCSNMIEDAVRA-FRGIASPNVISWTSLIAGFSEHGLEEESIKV 406

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           F  M Q      +S TL +IL A G + +L    +LHG   +        V N L+ +Y+
Sbjct: 407 FGAM-QGVGVRPNSFTLSTILGACGTIKSLTQTRKLHGYIIKNNADNDVVVGNALVDAYA 465

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
             G VD A+ V   M   RDV+++ ++       G+ E AL +   M +     D  +  
Sbjct: 466 GLGMVDDAWHVTSMMKH-RDVITYTSLATRINQTGNHEMALNIITHMNKDDVRMDGFSLA 524

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCV----VDLLARAGCLSDASGLAG 515
           S L+A     +   G     + +    VK     +  V    VDL  + GC+ DA     
Sbjct: 525 SFLSAAAGIPIMETG-----KQLHCYSVKSGLGSWISVSNGLVDLYGKCGCIHDAH---R 576

Query: 516 KLLEGMGPNI--WRALLSG 532
             LE   P+   W  L+ G
Sbjct: 577 SFLEITEPDAVSWNGLIFG 595



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 139/294 (47%), Gaps = 3/294 (1%)

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           IH   IK+G   D+ ++N++L +Y     +  A Q+F EM C+DV SWT +M  +     
Sbjct: 37  IHSPIIKMGFQEDMFLSNNLLSLYGKCFGVAEARQLFDEMPCRDVASWTMLMSAYGKIGN 96

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
             +AL++F  M  S    +   L   +   + L +   G +  A V   G  S   L ++
Sbjct: 97  HEEALELFDSMLISGEYPNEFTLSTALRSCSALREFNHGTRFQALVTKSGFDSNPVLGSA 156

Query: 292 IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
           +I  YSKCG    +  VF  +    +VSWT ++S +V+ G   +AL  + +M Q    + 
Sbjct: 157 LIDFYSKCGCTQEAYRVFEYMNNGDIVSWTMMVSSFVEAGSWSQALQLYHRMIQTGV-AP 215

Query: 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVF 411
           +  T V +L AS  L  L     +H             ++  L+  Y KC +++ A  V 
Sbjct: 216 NEFTFVKLLAASSFL-GLNYGKLVHAHLMMWRIELNLVLKTALVDMYCKCQSIEDAVKV- 273

Query: 412 EEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            ++    DV  W  II G+  +     A+  +H+M  +G VP++ TY  ILNAC
Sbjct: 274 SKLTLEYDVFLWTAIISGFTQSLKFREAITAFHEMETSGVVPNNFTYSGILNAC 327



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/269 (28%), Positives = 133/269 (49%), Gaps = 11/269 (4%)

Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISG 326
           ++ G  +H+ ++  G Q ++ LSN+++++Y KC  +  +R +F+++  + + SWT ++S 
Sbjct: 31  VRDGICIHSPIIKMGFQEDMFLSNNLLSLYGKCFGVAEARQLFDEMPCRDVASWTMLMSA 90

Query: 327 YVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPR 386
           Y + G   EAL  F  M     +  +  TL + L +   L       +   +  ++GF  
Sbjct: 91  YGKIGNHEEALELFDSMLISG-EYPNEFTLSTALRSCSALREFNHGTRFQALVTKSGFDS 149

Query: 387 YRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM 446
              + + LI  YSKCG    AY VFE M    D+VSW  ++  +   G    AL LYH+M
Sbjct: 150 NPVLGSALIDFYSKCGCTQEAYRVFEYMNN-GDIVSWTMMVSSFVEAGSWSQALQLYHRM 208

Query: 447 TETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQM---IEENKVKPSQEHYGCVVDLLAR 503
            +TG  P+  T++ +L A    GL    LV  + M   IE N V  +      +VD+  +
Sbjct: 209 IQTGVAPNEFTFVKLLAASSFLGLNYGKLVHAHLMMWRIELNLVLKT-----ALVDMYCK 263

Query: 504 AGCLSDASGLAGKLLEGMGPNIWRALLSG 532
              + DA  ++   LE     +W A++SG
Sbjct: 264 CQSIEDAVKVSKLTLE-YDVFLWTAIISG 291


>gi|357167761|ref|XP_003581320.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
           mitochondrial-like [Brachypodium distachyon]
          Length = 773

 Score =  245 bits (625), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 175/562 (31%), Positives = 280/562 (49%), Gaps = 40/562 (7%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML--- 64
           SS L+  Y + G + +A  LFDE+ E++VV+W+ V+ G   NG   K +     M+    
Sbjct: 154 SSSLVYMYARCGSLGDAVKLFDEMVERDVVAWTAVVSGCVRNGECGKGICYLVQMIRLAG 213

Query: 65  -SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
            SG  PNS TM   L A   L  L   R +HG  VK G+                     
Sbjct: 214 DSGARPNSRTMESGLEACGVLGELSAGRCLHGYAVKEGIRDCALVVSALFSMYSKCDMTE 273

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               LF  L    +VS   ++  +    L ++AV LF     SGL P+ V +  V+ G  
Sbjct: 274 DACILFPELTEKDVVSWTGLIGAYCRRGLAREAVELFQEMEQSGLQPDEVLVSCVLSG-- 331

Query: 162 ALGSRA---LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            LGS A     +  H + I+      V + NS++ MY     +D A  +F  +  +D  S
Sbjct: 332 -LGSSANVNRGKAFHAVIIRRNFGDSVLIANSLISMYGKFELVDVAGTVFGMLHQRDDES 390

Query: 219 WTRMMGLFVDFEYAGDALKIFREMR---KSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
           W+ M+  +         L+++R+M+       +CD  +L++ IS  + LG L+ G+ +H 
Sbjct: 391 WSLMVAGYCKAGLDVKCLELYRQMQCRDHDEFLCDITSLVSAISSCSRLGRLRLGQSVHC 450

Query: 276 QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISGYVQNGCAR 334
             +   L  E  ++NS+I MY +CG+ + +  +F      + +V+W A+IS Y   G + 
Sbjct: 451 YSI-KCLLDENSITNSLIGMYGRCGNFELACKIFAVAKLRRDVVTWNALISSYSHVGRSN 509

Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
           +AL+ + +M  E     +S TL+++++A   LAALE    LH      G     S+   L
Sbjct: 510 DALSLYGQMLTEDVKP-NSSTLITVISACANLAALEHGELLHSYVKNMGLESDVSISTAL 568

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           +  Y+KCG +  A  +F+ M   RDVV+WN +I GYG++G    AL L+ +M      P+
Sbjct: 569 VDMYTKCGQLGTARGIFDSM-LQRDVVTWNVMISGYGMHGEANQALKLFSEMEAGSIKPN 627

Query: 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLA 514
           S T+L+IL+AC HAGL ++G  +F +M    +++P+ +HY C+VDLL ++G L +A  L 
Sbjct: 628 SLTFLAILSACCHAGLVDEGRKLFIRM-GGYRLEPNLKHYACMVDLLGKSGLLQEAEDLV 686

Query: 515 GKLLEGMGPNIWRALLSGCVLH 536
             +       +W  LLS C +H
Sbjct: 687 LAMPIKPDGGVWGTLLSACKVH 708



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 164/595 (27%), Positives = 276/595 (46%), Gaps = 44/595 (7%)

Query: 5   PYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML 64
           P  ++KL+S Y  SG    A   F   P  +   W+ ++  +      + ++ A   M  
Sbjct: 47  PDFAAKLVSAYSSSGLPGFATLAFSASPCPDTFLWNSLLRSHHCASDFDSALSAHRRMRA 106

Query: 65  SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES-------------------- 104
           SG  P+ FT      AAA L  L +  S+H   VKFGL +                    
Sbjct: 107 SGARPSRFTAPLAASAAAELAALPVGTSVHSYSVKFGLLAGDGSVAVSSSLVYMYARCGS 166

Query: 105 -----DLFEGLKNPYLVSCNAIVAGFINN----KLFQQAVLLFNFFRGSGLVPNAVTMLT 155
                 LF+ +    +V+  A+V+G + N    K     V +      SG  PN+ TM +
Sbjct: 167 LGDAVKLFDEMVERDVVAWTAVVSGCVRNGECGKGICYLVQMIRLAGDSGARPNSRTMES 226

Query: 156 VIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYS-CLMDLDAAIQIFREMECK 214
            +  C  LG  +    +HG  +K G+     V +++  MYS C M  DA I +F E+  K
Sbjct: 227 GLEACGVLGELSAGRCLHGYAVKEGIRDCALVVSALFSMYSKCDMTEDACI-LFPELTEK 285

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
           DV+SWT ++G +     A +A+++F+EM +S +  D V +  ++S      ++ RGK  H
Sbjct: 286 DVVSWTGLIGAYCRRGLAREAVELFQEMEQSGLQPDEVLVSCVLSGLGSSANVNRGKAFH 345

Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
           A ++       + ++NS+I+MY K   +D + +VF  + ++   SW+ +++GY + G   
Sbjct: 346 AVIIRRNFGDSVLIANSLISMYGKFELVDVAGTVFGMLHQRDDESWSLMVAGYCKAGLDV 405

Query: 335 EALNQFIKMRQEKTDS--VDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN 392
           + L  + +M+    D    D  +LVS +++   L  L +   +H  + +       S+ N
Sbjct: 406 KCLELYRQMQCRDHDEFLCDITSLVSAISSCSRLGRLRLGQSVHCYSIKCLLDE-NSITN 464

Query: 393 CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV 452
            LI  Y +CGN +LA  +F      RDVV+WN +I  Y   G    AL+LY +M      
Sbjct: 465 SLIGMYGRCGNFELACKIFAVAKLRRDVVTWNALISSYSHVGRSNDALSLYGQMLTEDVK 524

Query: 453 PDSSTYLSILNACGHAGLTNDGLVIFN---QMIEENKVKPSQEHYGCVVDLLARAGCLSD 509
           P+SST +++++AC +      G ++ +    M  E+ V  S      +VD+  + G L  
Sbjct: 525 PNSSTLITVISACANLAALEHGELLHSYVKNMGLESDVSISTA----LVDMYTKCGQLGT 580

Query: 510 ASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFL 564
           A G+   +L+      W  ++SG  +H G    A  L S   + G IK   ++FL
Sbjct: 581 ARGIFDSMLQ-RDVVTWNVMISGYGMH-GEANQALKLFS-EMEAGSIKPNSLTFL 632



 Score = 47.4 bits (111), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 94/220 (42%), Gaps = 9/220 (4%)

Query: 272 QLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNG 331
           +LHA     GL S    +  +++ YS  G    +   F+         W +++  +    
Sbjct: 33  RLHALASTSGLSSRPDFAAKLVSAYSSSGLPGFATLAFSASPCPDTFLWNSLLRSHHCAS 92

Query: 332 CAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGF---PRYR 388
               AL+   +MR          T     +A+ ELAAL +   +H  + + G        
Sbjct: 93  DFDSALSAHRRMRASGARP-SRFTAPLAASAAAELAALPVGTSVHSYSVKFGLLAGDGSV 151

Query: 389 SVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMT- 447
           +V + L+  Y++CG++  A  +F+EM   RDVV+W  ++ G   NG     +    +M  
Sbjct: 152 AVSSSLVYMYARCGSLGDAVKLFDEM-VERDVVAWTAVVSGCVRNGECGKGICYLVQMIR 210

Query: 448 ---ETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEE 484
              ++G  P+S T  S L ACG  G  + G  +    ++E
Sbjct: 211 LAGDSGARPNSRTMESGLEACGVLGELSAGRCLHGYAVKE 250



 Score = 40.0 bits (92), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 81/209 (38%), Gaps = 30/209 (14%)

Query: 373 LQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGV 432
           L+LH +A  +G          L+S+YS  G    A + F       D   WN+++  +  
Sbjct: 32  LRLHALASTSGLSSRPDFAAKLVSAYSSSGLPGFATLAFSA-SPCPDTFLWNSLLRSHHC 90

Query: 433 NGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGL------VIFNQMIEENK 486
               ++AL+ + +M  +G  P   T     +A         G       V F  +  +  
Sbjct: 91  ASDFDSALSAHRRMRASGARPSRFTAPLAASAAAELAALPVGTSVHSYSVKFGLLAGDGS 150

Query: 487 VKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEAL 546
           V  S      +V + AR G L DA  L  +++E      W A++SGCV            
Sbjct: 151 VAVSSS----LVYMYARCGSLGDAVKLFDEMVE-RDVVAWTAVVSGCV------------ 193

Query: 547 RSGSQKKGI------IKIPGISFLNSTSR 569
           R+G   KGI      I++ G S     SR
Sbjct: 194 RNGECGKGICYLVQMIRLAGDSGARPNSR 222


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  245 bits (625), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 152/504 (30%), Positives = 262/504 (51%), Gaps = 45/504 (8%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F+ +    LV+   ++  F      + A+ LF     SG VP+  T  +V+  C  LG 
Sbjct: 7   VFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGL 66

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYS-CLMD--LDAAIQIFREMECKDVISWTRM 222
            AL + +H   I+LGL LDV V  S++DMY+ C  D  +D + ++F +M   +V+SWT +
Sbjct: 67  LALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAI 126

Query: 223 MGLFVDF-EYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           +  +    E   +A+++F +M    I  +  +  +++     L D   G+Q+++  V  G
Sbjct: 127 ITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLG 186

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           + S   + NS+I+MY++ G ++ +R  F+ + EK+LVS+ AI+ GY +N  + EA   F 
Sbjct: 187 IASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLF- 245

Query: 342 KMRQEKTDS---VDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
               E  D+   + + T  S+L+ +  + A+    Q+HG   + G+   + + N LIS Y
Sbjct: 246 ---NEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMY 302

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
           S+CGN++ A+ VF EM   R+V+SW ++I G+  +G    AL ++HKM ETG  P+  TY
Sbjct: 303 SRCGNIEAAFQVFNEME-DRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITY 361

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
           +++L+AC H G+ ++G   FN M +E+ + P  EHY C+VDLL R+G L +A      + 
Sbjct: 362 VAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMP 421

Query: 519 EGMGPNIWRALLSGCVLH---------------------------------VGRFQDAEA 545
                 +WR LL  C +H                                  G+++D   
Sbjct: 422 LMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVK 481

Query: 546 LRSGSQKKGIIKIPGISFLNSTSR 569
           +R   +++ +IK  G S++   +R
Sbjct: 482 IRKSMKERNLIKEAGCSWIEVENR 505



 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 126/496 (25%), Positives = 244/496 (49%), Gaps = 33/496 (6%)

Query: 24  AENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAG 83
           A  +FD++PE+N+V+W+++I  ++  G    ++  F  M LSG +P+ FT   VL A   
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63

Query: 84  LQNLELARSIHGLMVKFGLESDL-------------------------FEGLKNPYLVSC 118
           L  L L + +H  +++ GL  D+                         FE +    ++S 
Sbjct: 64  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 123

Query: 119 NAIVAGFINN-KLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTI 177
            AI+  +  + +  ++A+ LF       + PN  +  +V++ C  L      E ++   +
Sbjct: 124 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAV 183

Query: 178 KLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALK 237
           KLG+     V NS++ MY+    ++ A + F  +  K+++S+  ++  +     + +A  
Sbjct: 184 KLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFL 243

Query: 238 IFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYS 297
           +F E+  + I        +L+S  A +G + +G+Q+H +++ GG +S   + N++I+MYS
Sbjct: 244 LFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYS 303

Query: 298 KCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLV 357
           +CG+++++  VFN++ +++++SWT++I+G+ ++G A  AL  F KM +  T   + IT V
Sbjct: 304 RCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKP-NEITYV 362

Query: 358 SILTASGELAAL-EICLQLHGIAFEAGF-PRYRSVQNCLISSYSKCGNVDLAYIVFEEMG 415
           ++L+A   +  + E     + +  E G  PR      C++    + G +  A      M 
Sbjct: 363 AVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYA-CMVDLLGRSGLLVEAMEFINSMP 421

Query: 416 FLRDVVSWNTIIYGYGVNGHGETALALY-HKMTETGEVPDSSTYLSILNACGHAGLTNDG 474
            + D + W T++    V  HG T L  +  +M    E  D + Y+ + N    AG   D 
Sbjct: 422 LMADALVWRTLLGACRV--HGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDV 479

Query: 475 LVIFNQMIEENKVKPS 490
           + I   M E N +K +
Sbjct: 480 VKIRKSMKERNLIKEA 495



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 143/277 (51%), Gaps = 23/277 (8%)

Query: 19  GKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEK-SMKAFSHMMLSGLLPNSFTMVGV 77
           G + ++  +F+++PE NV+SW+ +I  Y+ +G  +K +++ F  M+   + PN F+   V
Sbjct: 103 GSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSV 162

Query: 78  LVAAAGLQNLELARSIHGLMVKFGLES----------------------DLFEGLKNPYL 115
           L A   L +      ++   VK G+ S                        F+ L    L
Sbjct: 163 LKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNL 222

Query: 116 VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGL 175
           VS NAIV G+  N   ++A LLFN    +G+  +A T  +++ G  ++G+    E IHG 
Sbjct: 223 VSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGR 282

Query: 176 TIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDA 235
            +K G   +  + N+++ MYS   +++AA Q+F EME ++VISWT M+  F    +A  A
Sbjct: 283 LLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRA 342

Query: 236 LKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQ 272
           L++F +M ++    + +  + ++S  + +G +  G++
Sbjct: 343 LEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQK 379



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 90/176 (51%), Gaps = 22/176 (12%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+S Y +SG++++A   FD + EKN+VS++ ++ GY+ N   E++   F+ +  +G+  +
Sbjct: 197 LISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGIS 256

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFE 108
           +FT   +L  AA +  +     IHG ++K G +S+                      +F 
Sbjct: 257 AFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFN 316

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
            +++  ++S  +++ GF  +    +A+ +F+    +G  PN +T + V+  C  +G
Sbjct: 317 EMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVG 372


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  245 bits (625), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 145/490 (29%), Positives = 253/490 (51%), Gaps = 24/490 (4%)

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-------------------- 105
           GL+ +SF  V VL      ++L  A+ +H  ++K  +E +                    
Sbjct: 23  GLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEA 82

Query: 106 --LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
             +F+ L      S NA++AG++ +K  + A+ LF      G+ PNA T + +++ C +L
Sbjct: 83  RCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASL 142

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
            +    + +H      GL  DV V  ++L MY     ++ A +IF  +   D+ISWT M+
Sbjct: 143 SALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMI 202

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
           G +       +A ++  +M +     + +  +++++  A  G LK  K++H   +  GL+
Sbjct: 203 GAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLE 262

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
            ++R+  +++ MY+K G +D +R VF+++  + +VSW  +I  + ++G   EA + F++M
Sbjct: 263 LDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQM 322

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
           + E     D+I  +SIL A     ALE   ++H  A ++G      V   L+  YSK G+
Sbjct: 323 QTEGCKP-DAIMFLSILNACASAGALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGS 381

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           +D A +VF+ M  +R+VVSWN +I G   +G G+ AL ++ +MT  G  PD  T++++L+
Sbjct: 382 IDDARVVFDRMK-VRNVVSWNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLS 440

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
           AC HAGL ++G   +  M +   ++P   H  C+VDLL RAG L +A      +      
Sbjct: 441 ACSHAGLVDEGRSQYLAMTQVYGIEPDVSHCNCMVDLLGRAGRLMEAKLFIDNMAVDPDE 500

Query: 524 NIWRALLSGC 533
             W ALL  C
Sbjct: 501 ATWGALLGSC 510



 Score =  191 bits (485), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 126/488 (25%), Positives = 236/488 (48%), Gaps = 37/488 (7%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           LL  Y + G+++EA  +FD + +K+  SW+ +I GY  +   E +M+ F  M   G+ PN
Sbjct: 69  LLHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPN 128

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFE 108
           + T + +L A A L  L+  + +H  +   GLESD                      +F+
Sbjct: 129 AGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFD 188

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            L N  ++S   ++  +  +   ++A  L       G  PNA+T ++++  C + G+   
Sbjct: 189 NLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKW 248

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
            + +H   +  GL LDV V  +++ MY+    +D A  +F  M+ +DV+SW  M+G F +
Sbjct: 249 VKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAE 308

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
                +A  +F +M+      D +  L++++  A  G L+  K++H   +  GL+ ++R+
Sbjct: 309 HGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALDSGLEVDVRV 368

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
             +++ MYSK G +D +R VF+++  +++VSW A+ISG  Q+G  ++AL  F +M     
Sbjct: 369 GTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLAQHGLGQDALEVFRRMTAHGV 428

Query: 349 DSVDSITLVSILTASGELAALE-------ICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
              D +T V++L+A      ++          Q++GI  +       S  NC++    + 
Sbjct: 429 KP-DRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDV------SHCNCMVDLLGRA 481

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G +  A +  + M    D  +W  ++      G+ E    L  K     +  +++TY+ +
Sbjct: 482 GRLMEAKLFIDNMAVDPDEATWGALLGSCRTYGNVELG-ELVAKERLKLDPKNAATYVLL 540

Query: 462 LNACGHAG 469
            N    AG
Sbjct: 541 SNIYAEAG 548



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 127/419 (30%), Positives = 217/419 (51%), Gaps = 12/419 (2%)

Query: 128 NKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSV 187
           N L +  V+L N  +  GL+ ++   + V++ C+        + +H   IK  +  +  V
Sbjct: 7   NTLSEAIVVLMNRLQ-RGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHV 65

Query: 188 NNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRI 247
            N++L +Y     L  A  +F  +  K   SW  M+  +V+ ++A DA+++FREM    +
Sbjct: 66  MNNLLHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGV 125

Query: 248 ICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRS 307
             +    + ++   A L  LK GK++HA +  GGL+S++R+  +++ MY KCG ++ +R 
Sbjct: 126 QPNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARR 185

Query: 308 VFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELA 367
           +F+ +    ++SWT +I  Y Q+G  +EA    ++M QE     ++IT VSIL A     
Sbjct: 186 IFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKP-NAITYVSILNACASEG 244

Query: 368 ALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
           AL+   ++H  A +AG      V   L+  Y+K G++D A +VF+ M  +RDVVSWN +I
Sbjct: 245 ALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMK-VRDVVSWNVMI 303

Query: 428 YGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIE---E 484
             +  +G G  A  L+ +M   G  PD+  +LSILNAC  AG       I    ++   E
Sbjct: 304 GAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALDSGLE 363

Query: 485 NKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDA 543
             V+        +V + +++G + DA  +  + ++      W A++SG   H G  QDA
Sbjct: 364 VDVRVGT----ALVHMYSKSGSIDDARVVFDR-MKVRNVVSWNAMISGLAQH-GLGQDA 416



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 99/216 (45%), Gaps = 25/216 (11%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D    + L+  Y KSG I +A  +FD +  ++VVSW+++I  ++ +G   ++   F  M
Sbjct: 263 LDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQM 322

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
              G  P++   + +L A A    LE  + IH   +  GLE D                 
Sbjct: 323 QTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSI 382

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +F+ +K   +VS NA+++G   + L Q A+ +F      G+ P+ VT + V+  C
Sbjct: 383 DDARVVFDRMKVRNVVSWNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSAC 442

Query: 161 VALG--SRALCELIHGLTIKLGLILDVSVNNSVLDM 194
              G       + +  +T   G+  DVS  N ++D+
Sbjct: 443 SHAGLVDEGRSQYL-AMTQVYGIEPDVSHCNCMVDL 477


>gi|297740651|emb|CBI30833.3| unnamed protein product [Vitis vinifera]
          Length = 709

 Score =  245 bits (625), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 163/557 (29%), Positives = 266/557 (47%), Gaps = 67/557 (12%)

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFG-LESDL-FEGLKNPY------------- 114
           N  T +  L A+A  +NL   + IH  M+  G L S L    L N Y             
Sbjct: 36  NLTTCIASLQASAHHKNLSKGKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALSIF 95

Query: 115 --------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
                   + + NAI++GFI N   ++    +   R  G++P+  T    I+ C+ +   
Sbjct: 96  SDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDVLE- 154

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
              + IHGL  K GL LDV + +++++ Y     ++ A   F E+  +DV+ W  M+  +
Sbjct: 155 --IKKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGY 212

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
                    L+ FR M    ++     +  ++SV A++GDL  G+ +H   +  G  S +
Sbjct: 213 AQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGV 272

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            +SNS+I MY KC  ++ +  +F  + EK + SW +I+S + Q G     L    +M   
Sbjct: 273 AVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGA 332

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS------VQNCLISSYSK 400
                D +T+ ++L A   LAAL    ++HG    +G  +         ++N +I  Y+K
Sbjct: 333 GIQP-DLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAK 391

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CG++  A++VFE M   +DV SWN +I GYG++G+G  AL ++ +M E    PD  T++ 
Sbjct: 392 CGSMRDAHLVFERMS-NKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVG 450

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           +L+AC HAG  + G     QM  +  V P+ EHY CV+D+L RAG L +A  LA  +   
Sbjct: 451 VLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIE 510

Query: 521 MGPNIWRALLSGCVLH---------------------------------VGRFQDAEALR 547
             P +WRALL+ C LH                                 VGR+++   +R
Sbjct: 511 ANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVR 570

Query: 548 SGSQKKGIIKIPGISFL 564
              +++ + K PG S++
Sbjct: 571 HTMRQQNVRKTPGCSWI 587



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 135/518 (26%), Positives = 243/518 (46%), Gaps = 43/518 (8%)

Query: 5   PYNSSKLLSNYFKSGKIKEAENLF-DEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           P + + L++ Y K  ++  A ++F D   E NV +++ +I G+  NGF E+  + +  M 
Sbjct: 72  PLSITSLINMYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMR 131

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPYL------ 115
             G++P+ FT    + A   L  LE+ + IHGL+ KFGLE D+F G  L N YL      
Sbjct: 132 NEGVIPDKFTFPCAIKAC--LDVLEI-KKIHGLLFKFGLELDVFIGSALVNCYLKFGLME 188

Query: 116 --------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                         V  NA+V G+     F+  +  F       +VP+  T+  V+    
Sbjct: 189 HAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFA 248

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            +G      +IHG  +K+G    V+V+NS++DMY     ++ A++IF  M  KD+ SW  
Sbjct: 249 VMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNS 308

Query: 222 MMGLFVDFEYAGD---ALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           ++ +    E  GD    L++   M  + I  D V +  ++   + L  L  G+++H  ++
Sbjct: 309 IVSV---HEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMI 365

Query: 279 LGGLQS------ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC 332
           + GL        ++ L N++I MY+KCG +  +  VF +++ K + SW  +I GY  +G 
Sbjct: 366 VSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGY 425

Query: 333 AREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN 392
             EAL  F +M + +    D +T V +L+A      +        +  ++ +    ++++
Sbjct: 426 GNEALEMFSRMCEVQLKP-DEVTFVGVLSACSHAGFVSQGRNF-LVQMKSKYDVAPTIEH 483

Query: 393 --CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
             C+I    + G +D AY +   M    + V W  ++    ++ H   A     ++ E  
Sbjct: 484 YTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFEL- 542

Query: 451 EVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVK 488
           E     +Y+ + N  G  G   + L + + M ++N  K
Sbjct: 543 EPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRK 580



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 93/354 (26%), Positives = 166/354 (46%), Gaps = 30/354 (8%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  S L++ Y K G ++ A+  F+E+P ++VV W+ +++GY+  G  E  ++ F  M
Sbjct: 169 LDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRM 228

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES------------------ 104
               ++P+ FT+ GVL   A + +L   R IHG  +K G +S                  
Sbjct: 229 NDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCI 288

Query: 105 ----DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
               ++FE ++   + S N+IV+           + L +   G+G+ P+ VT+ TV+  C
Sbjct: 289 EDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPAC 348

Query: 161 VALGSRALCELIHGLTIKLGL------ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
             L +      IHG  I  GL      I DV + N+V+DMY+    +  A  +F  M  K
Sbjct: 349 SHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNK 408

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
           DV SW  M+  +    Y  +AL++F  M + ++  D V  + ++S  +  G + +G+   
Sbjct: 409 DVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFL 468

Query: 275 AQVVLG-GLQSELRLSNSIIAMYSKCGDLDSSRSV-FNQITEKSLVSWTAIISG 326
            Q+     +   +     +I M  + G LD +  +      E + V W A+++ 
Sbjct: 469 VQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAA 522


>gi|218191314|gb|EEC73741.1| hypothetical protein OsI_08374 [Oryza sativa Indica Group]
          Length = 667

 Score =  244 bits (624), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 173/612 (28%), Positives = 295/612 (48%), Gaps = 65/612 (10%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWS-IVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFT 73
           Y   G+   A NL  ++P+   VS+S  ++  Y+  G H +++  +S M     L   F 
Sbjct: 55  YCACGRPSSAHNLLAQMPQPPPVSFSNSLLRSYTGLGCHREALAVYSAMRAFDHLTFPFA 114

Query: 74  MVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFEGLK 111
                 A AGL+     R++H   +  G   D                      +F  ++
Sbjct: 115 AK----ACAGLRLGRHGRAVHCRALAAGFGGDTYVQNALISMYMSCGDVGAAEAVFGAMR 170

Query: 112 NPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCEL 171
           N  +VS NA++AG + N   ++A+ +F      G+  +  T+++V+  C           
Sbjct: 171 NRTVVSWNAVIAGCVKNGYAERALEVFGEMAADGVGIDRATVVSVLPACAQAKDLNTGRA 230

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC-KDVISWTRMMGLFVDFE 230
           +H L    GL   V+V N+++DMY     L+ A ++F   +  KDV+SWT M+G +V  +
Sbjct: 231 VHRLVEDKGLGDYVAVKNALIDMYGKCRSLEDARRVFDHCKHDKDVVSWTAMIGAYVLND 290

Query: 231 YAGDALKIFREMRKS-RIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLS 289
            A +A+ +  +M  S     + V ++ L+S  A +   K  K  HA  +  GL+S++ + 
Sbjct: 291 RAFEAISLGCQMLMSGAAWPNGVTMVYLLSACASMPSGKHAKCTHALCIRLGLKSDIAVE 350

Query: 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD 349
            ++I  Y++CG +   R    + + ++  +W A +SGY  +G  ++A+  F +M  E   
Sbjct: 351 TALIDAYARCGKMKLMRLTLERGSWRA-ETWNAALSGYTVSGREKKAIELFKRMIAESVR 409

Query: 350 SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYI 409
             DS T+ SIL A  E A L+    +H      GF R   +   LI  YSK G++D A+ 
Sbjct: 410 P-DSATMASILPAYAESADLKEGKNIHCFLLTLGFLRSTEIATGLIDVYSKAGDLDAAWA 468

Query: 410 VFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAG 469
           +F+ +   +DVV+W TII GY ++GH  TA+ LY +M E+G  P++ T  ++L AC HAG
Sbjct: 469 LFQWLP-EKDVVAWTTIIAGYSIHGHARTAILLYDRMVESGGKPNTVTIATLLYACSHAG 527

Query: 470 LTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRAL 529
           + ++G+ +F  M   + + P+ EHY C+VD+L RAG + +A  L   +      ++W AL
Sbjct: 528 MIDEGIKVFKDMRNVHGLMPNGEHYSCLVDMLGRAGRIEEAHRLIQDMPFEPSTSVWGAL 587

Query: 530 LSGCVLH---------------------------------VGRFQDAEALRSGSQKKGII 556
           L  CVLH                                   R++D + +R    ++G++
Sbjct: 588 LGACVLHKNVEFGEVAAKRLFQLDPENTGSYVLLGNIYAAADRWRDVQDVRRMMVERGLL 647

Query: 557 KIPGISFLNSTS 568
           K PG S + + S
Sbjct: 648 KEPGSSLVEARS 659



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 116/482 (24%), Positives = 220/482 (45%), Gaps = 54/482 (11%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + L+S Y   G +  AE +F  +  + VVSW+ VI G   NG+ E++++ F  M 
Sbjct: 142 DTYVQNALISMYMSCGDVGAAEAVFGAMRNRTVVSWNAVIAGCVKNGYAERALEVFGEMA 201

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL--------------------- 102
             G+  +  T+V VL A A  ++L   R++H L+   GL                     
Sbjct: 202 ADGVGIDRATVVSVLPACAQAKDLNTGRAVHRLVEDKGLGDYVAVKNALIDMYGKCRSLE 261

Query: 103 -ESDLFEGLKNPY-LVSCNAIVAGFI-NNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
               +F+  K+   +VS  A++  ++ N++ F+   L           PN VTM+ ++  
Sbjct: 262 DARRVFDHCKHDKDVVSWTAMIGAYVLNDRAFEAISLGCQMLMSGAAWPNGVTMVYLLSA 321

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C ++ S    +  H L I+LGL  D++V  +++D Y+    +   +++  E       +W
Sbjct: 322 CASMPSGKHAKCTHALCIRLGLKSDIAVETALIDAYARCGKMK-LMRLTLERGSWRAETW 380

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
              +  +        A+++F+ M    +  D+  + +++   A   DLK GK +H  ++ 
Sbjct: 381 NAALSGYTVSGREKKAIELFKRMIAESVRPDSATMASILPAYAESADLKEGKNIHCFLLT 440

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G      ++  +I +YSK GDLD++ ++F  + EK +V+WT II+GY  +G AR A+  
Sbjct: 441 LGFLRSTEIATGLIDVYSKAGDLDAAWALFQWLPEKDVVAWTTIIAGYSIHGHARTAILL 500

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ-------- 391
           + +M  E     +++T+ ++L A      ++  +++        F   R+V         
Sbjct: 501 YDRM-VESGGKPNTVTIATLLYACSHAGMIDEGIKV--------FKDMRNVHGLMPNGEH 551

Query: 392 -NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
            +CL+    + G ++ A+ + ++M F      W  ++              + HK  E G
Sbjct: 552 YSCLVDMLGRAGRIEEAHRLIQDMPFEPSTSVWGALL-----------GACVLHKNVEFG 600

Query: 451 EV 452
           EV
Sbjct: 601 EV 602



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 119/263 (45%), Gaps = 11/263 (4%)

Query: 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWT-AIISGYVQNGCAREALNQFIKMRQEKT 348
           + +  +Y  CG   S+ ++  Q+ +   VS++ +++  Y   GC REAL  +  MR    
Sbjct: 49  HPLFMVYCACGRPSSAHNLLAQMPQPPPVSFSNSLLRSYTGLGCHREALAVYSAMR---- 104

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
            + D +T      A   L        +H  A  AGF     VQN LIS Y  CG+V  A 
Sbjct: 105 -AFDHLTFPFAAKACAGLRLGRHGRAVHCRALAAGFGGDTYVQNALISMYMSCGDVGAAE 163

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
            VF  M   R VVSWN +I G   NG+ E AL ++ +M   G   D +T +S+L AC  A
Sbjct: 164 AVFGAMRN-RTVVSWNAVIAGCVKNGYAERALEVFGEMAADGVGIDRATVVSVLPACAQA 222

Query: 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRA 528
              N G  + ++++E+  +         ++D+  +   L DA  +            W A
Sbjct: 223 KDLNTGRAV-HRLVEDKGLGDYVAVKNALIDMYGKCRSLEDARRVFDHCKHDKDVVSWTA 281

Query: 529 LLSGCVLHVGRFQDAEALRSGSQ 551
           ++   VL+   F   EA+  G Q
Sbjct: 282 MIGAYVLNDRAF---EAISLGCQ 301


>gi|255561305|ref|XP_002521663.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539054|gb|EEF40650.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 578

 Score =  244 bits (624), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 161/525 (30%), Positives = 278/525 (52%), Gaps = 33/525 (6%)

Query: 49  NGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--- 105
            G + + +K +  +  S +  N++ +  V+ A +          ++ +++K GL+SD   
Sbjct: 4   KGLNHQILKFYKELHSSDIYANAYIIPSVIKACSFSNCHHFGIQLYSIVLKSGLDSDFVI 63

Query: 106 -------------------LFEG--LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGS 144
                              +F+   LK+P  +S N I+ G+  N  F Q  ++F      
Sbjct: 64  CNSFISFYAKSSCTESALKVFDTMPLKDP--ISWNCIINGYFQNGYFTQGFIMFKEMYEC 121

Query: 145 GLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLIL-DVSVNNSVLDMYSCLMDLDA 203
           G+VP    + +V+  CV LG   L   IH L +  G I  ++ V  S++D Y    D   
Sbjct: 122 GIVPKPELVASVVSVCVRLGDMKLGRAIHALVLIDGRIAKEIFVLTSLVDWYFKSGDSLM 181

Query: 204 AIQIFREMECKDVISWTRMM-GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNA 262
           A+++F ++E K+V+SWT ++ G   + +Y   AL  FR M+ + +  + V L+ ++   A
Sbjct: 182 ALRVFDQIEVKNVVSWTALVSGCSANLDY-NMALDCFRAMQINGVRPNRVTLIAILPAFA 240

Query: 263 ILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGD-LDSSRSVFNQITEKSLVSWT 321
            LG  K GK++H      G   +    +S+I +Y +  + L  ++  F +   K +V W+
Sbjct: 241 ELGCAKTGKEIHGYAFRHGFDLDHHFLSSLIHIYCRSREGLQLAKLTFERSNVKDVVMWS 300

Query: 322 AIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFE 381
           +II  Y ++  + EAL  F  MR + T+  +S+TL++++TA   L +L+     HG   +
Sbjct: 301 SIIGSYCRSADSIEALKLFRWMRADGTEP-NSVTLLAVITACTTLTSLKNGYGTHGYIVK 359

Query: 382 AGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALA 441
            G      + N LI+ YSKCG V  ++ +F+EM  ++D VSW+T+I  YG++GHG+ AL 
Sbjct: 360 CGLNFDTYIGNALINMYSKCGCVVASHQIFKEM-HIKDSVSWSTLITAYGLHGHGKEALC 418

Query: 442 LYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLL 501
           L+H+M   G  PD+ T+L++L+AC H+GL  +G  IF+ + ++ KV  + EHY C+VDLL
Sbjct: 419 LFHEMQLQGVEPDAMTFLAVLSACNHSGLVKEGQQIFDNVKKDGKVSLTVEHYACLVDLL 478

Query: 502 ARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEAL 546
            ++G + DA  +   +       IW +L+S C +H GR + AE L
Sbjct: 479 GKSGKVDDAFDILRAMPMKPSTTIWSSLVSACKIH-GRLEIAERL 522



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 122/465 (26%), Positives = 224/465 (48%), Gaps = 28/465 (6%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
            +S Y KS   + A  +FD +P K+ +SW+ +I+GY  NG+  +    F  M   G++P 
Sbjct: 67  FISFYAKSSCTESALKVFDTMPLKDPISWNCIINGYFQNGYFTQGFIMFKEMYECGIVPK 126

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGL----------------MVKFGLES-------DLF 107
              +  V+     L +++L R+IH L                +V +  +S        +F
Sbjct: 127 PELVASVVSVCVRLGDMKLGRAIHALVLIDGRIAKEIFVLTSLVDWYFKSGDSLMALRVF 186

Query: 108 EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRA 167
           + ++   +VS  A+V+G   N  +  A+  F   + +G+ PN VT++ ++     LG   
Sbjct: 187 DQIEVKNVVSWTALVSGCSANLDYNMALDCFRAMQINGVRPNRVTLIAILPAFAELGCAK 246

Query: 168 LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMD-LDAAIQIFREMECKDVISWTRMMGLF 226
             + IHG   + G  LD    +S++ +Y    + L  A   F     KDV+ W+ ++G +
Sbjct: 247 TGKEIHGYAFRHGFDLDHHFLSSLIHIYCRSREGLQLAKLTFERSNVKDVVMWSSIIGSY 306

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
                + +ALK+FR MR      ++V LL +I+    L  LK G   H  +V  GL  + 
Sbjct: 307 CRSADSIEALKLFRWMRADGTEPNSVTLLAVITACTTLTSLKNGYGTHGYIVKCGLNFDT 366

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            + N++I MYSKCG + +S  +F ++  K  VSW+ +I+ Y  +G  +EAL  F +M+ +
Sbjct: 367 YIGNALINMYSKCGCVVASHQIFKEMHIKDSVSWSTLITAYGLHGHGKEALCLFHEMQLQ 426

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN--CLISSYSKCGNV 404
             +  D++T +++L+A      ++   Q+     + G     +V++  CL+    K G V
Sbjct: 427 GVEP-DAMTFLAVLSACNHSGLVKEGQQIFDNVKKDG-KVSLTVEHYACLVDLLGKSGKV 484

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
           D A+ +   M        W++++    ++G  E A  L  ++ ++
Sbjct: 485 DDAFDILRAMPMKPSTTIWSSLVSACKIHGRLEIAERLAQELIKS 529



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 100/342 (29%), Positives = 170/342 (49%), Gaps = 4/342 (1%)

Query: 126 INNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDV 185
           ++  L  Q +  +     S +  NA  + +VI+ C           ++ + +K GL  D 
Sbjct: 2   VSKGLNHQILKFYKELHSSDIYANAYIIPSVIKACSFSNCHHFGIQLYSIVLKSGLDSDF 61

Query: 186 SVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKS 245
            + NS +  Y+     ++A+++F  M  KD ISW  ++  +    Y      +F+EM + 
Sbjct: 62  VICNSFISFYAKSSCTESALKVFDTMPLKDPISWNCIINGYFQNGYFTQGFIMFKEMYEC 121

Query: 246 RIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG-LQSELRLSNSIIAMYSKCGDLDS 304
            I+     + +++SV   LGD+K G+ +HA V++ G +  E+ +  S++  Y K GD   
Sbjct: 122 GIVPKPELVASVVSVCVRLGDMKLGRAIHALVLIDGRIAKEIFVLTSLVDWYFKSGDSLM 181

Query: 305 SRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASG 364
           +  VF+QI  K++VSWTA++SG   N     AL+ F  M+       + +TL++IL A  
Sbjct: 182 ALRVFDQIEVKNVVSWTALVSGCSANLDYNMALDCFRAMQINGVRP-NRVTLIAILPAFA 240

Query: 365 ELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN-VDLAYIVFEEMGFLRDVVSW 423
           EL   +   ++HG AF  GF       + LI  Y +    + LA + FE    ++DVV W
Sbjct: 241 ELGCAKTGKEIHGYAFRHGFDLDHHFLSSLIHIYCRSREGLQLAKLTFERSN-VKDVVMW 299

Query: 424 NTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
           ++II  Y  +     AL L+  M   G  P+S T L+++ AC
Sbjct: 300 SSIIGSYCRSADSIEALKLFRWMRADGTEPNSVTLLAVITAC 341



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 108/390 (27%), Positives = 183/390 (46%), Gaps = 30/390 (7%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + L+  YFKSG    A  +FD+I  KNVVSW+ ++ G S N  +  ++  F  M ++G+ 
Sbjct: 167 TSLVDWYFKSGDSLMALRVFDQIEVKNVVSWTALVSGCSANLDYNMALDCFRAMQINGVR 226

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF-------------EGLKNPYL 115
           PN  T++ +L A A L   +  + IHG   + G + D               EGL+   L
Sbjct: 227 PNRVTLIAILPAFAELGCAKTGKEIHGYAFRHGFDLDHHFLSSLIHIYCRSREGLQLAKL 286

Query: 116 ----------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
                     V  ++I+  +  +    +A+ LF + R  G  PN+VT+L VI  C  L S
Sbjct: 287 TFERSNVKDVVMWSSIIGSYCRSADSIEALKLFRWMRADGTEPNSVTLLAVITACTTLTS 346

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
                  HG  +K GL  D  + N++++MYS    + A+ QIF+EM  KD +SW+ ++  
Sbjct: 347 LKNGYGTHGYIVKCGLNFDTYIGNALINMYSKCGCVVASHQIFKEMHIKDSVSWSTLITA 406

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS- 284
           +    +  +AL +F EM+   +  D +  L ++S     G +K G+Q+   V   G  S 
Sbjct: 407 YGLHGHGKEALCLFHEMQLQGVEPDAMTFLAVLSACNHSGLVKEGQQIFDNVKKDGKVSL 466

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEK-SLVSWTAIISGYVQNG---CAREALNQF 340
            +     ++ +  K G +D +  +   +  K S   W++++S    +G    A     + 
Sbjct: 467 TVEHYACLVDLLGKSGKVDDAFDILRAMPMKPSTTIWSSLVSACKIHGRLEIAERLAQEL 526

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALE 370
           IK   E +++ +   L  I   SG   A+E
Sbjct: 527 IK--SEPSNAANHTLLSMIYAESGNWFAVE 554



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 44/77 (57%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + L++ Y K G +  +  +F E+  K+ VSWS +I  Y ++G  ++++  F  M 
Sbjct: 365 DTYIGNALINMYSKCGCVVASHQIFKEMHIKDSVSWSTLITAYGLHGHGKEALCLFHEMQ 424

Query: 64  LSGLLPNSFTMVGVLVA 80
           L G+ P++ T + VL A
Sbjct: 425 LQGVEPDAMTFLAVLSA 441


>gi|15226737|ref|NP_181604.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75276036|sp|Q7XJN6.1|PP197_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g40720
 gi|330254774|gb|AEC09868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 860

 Score =  244 bits (624), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 172/564 (30%), Positives = 288/564 (51%), Gaps = 39/564 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEK-NVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           D +  + L+  YFK G   +A  +F EI +K NVV W+++I G+  +G  E S+  +   
Sbjct: 204 DSFLKTALIDMYFKFGLSIDAWRVFVEIEDKSNVVLWNVMIVGFGGSGICESSLDLY--- 260

Query: 63  MLSG-----LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------ 105
           ML+      L+  SFT  G L A +  +N    R IH  +VK GL +D            
Sbjct: 261 MLAKNNSVKLVSTSFT--GALGACSQSENSGFGRQIHCDVVKMGLHNDPYVCTSLLSMYS 318

Query: 106 ----------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLT 155
                     +F  + +  L   NA+VA +  N     A+ LF F R   ++P++ T+  
Sbjct: 319 KCGMVGEAETVFSCVVDKRLEIWNAMVAAYAENDYGYSALDLFGFMRQKSVLPDSFTLSN 378

Query: 156 VIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYS-CLMDLDAAIQIFREMECK 214
           VI  C  LG     + +H    K  +    ++ +++L +YS C  D DA + +F+ ME K
Sbjct: 379 VISCCSVLGLYNYGKSVHAELFKRPIQSTSTIESALLTLYSKCGCDPDAYL-VFKSMEEK 437

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKS--RIICDTVALLNLISVNAILGDLKRGKQ 272
           D+++W  ++          +ALK+F +M+     +  D+  + ++ +  A L  L+ G Q
Sbjct: 438 DMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVTNACAGLEALRFGLQ 497

Query: 273 LHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC 332
           +H  ++  GL   + + +S+I +YSKCG  + +  VF  ++ +++V+W ++IS Y +N  
Sbjct: 498 VHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEMALKVFTSMSTENMVAWNSMISCYSRNNL 557

Query: 333 AREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN 392
              +++ F  M  +     DS+++ S+L A    A+L     LHG     G P    ++N
Sbjct: 558 PELSIDLFNLMLSQGIFP-DSVSITSVLVAISSTASLLKGKSLHGYTLRLGIPSDTHLKN 616

Query: 393 CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV 452
            LI  Y KCG    A  +F++M   + +++WN +IYGYG +G   TAL+L+ +M + GE 
Sbjct: 617 ALIDMYVKCGFSKYAENIFKKMQH-KSLITWNLMIYGYGSHGDCITALSLFDEMKKAGES 675

Query: 453 PDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASG 512
           PD  T+LS+++AC H+G   +G  IF  M ++  ++P+ EHY  +VDLL RAG L +A  
Sbjct: 676 PDDVTFLSLISACNHSGFVEEGKNIFEFMKQDYGIEPNMEHYANMVDLLGRAGLLEEAYS 735

Query: 513 LAGKLLEGMGPNIWRALLSGCVLH 536
               +      +IW  LLS    H
Sbjct: 736 FIKAMPIEADSSIWLCLLSASRTH 759



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 136/496 (27%), Positives = 240/496 (48%), Gaps = 38/496 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDE-------IPEKNVVSWSIVIHGYSINGFHEKSM 56
           DP+ ++ L++ Y K G +  A  +FD        +  ++V  W+ +I GY      ++ +
Sbjct: 94  DPFIATSLVNMYVKCGFLDYAVQVFDGWSQSQSGVSARDVTVWNSMIDGYFKFRRFKEGV 153

Query: 57  KAFSHMMLSGLLPNSFTM---VGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLK 111
             F  M++ G+ P++F++   V V+      +  E  + IHG M++  L++D F    L 
Sbjct: 154 GCFRRMLVFGVRPDAFSLSIVVSVMCKEGNFRREE-GKQIHGFMLRNSLDTDSFLKTALI 212

Query: 112 NPY---------------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNA 150
           + Y                     +V  N ++ GF  + + + ++ L+   + + +   +
Sbjct: 213 DMYFKFGLSIDAWRVFVEIEDKSNVVLWNVMIVGFGGSGICESSLDLYMLAKNNSVKLVS 272

Query: 151 VTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFRE 210
            +    +  C    +      IH   +K+GL  D  V  S+L MYS    +  A  +F  
Sbjct: 273 TSFTGALGACSQSENSGFGRQIHCDVVKMGLHNDPYVCTSLLSMYSKCGMVGEAETVFSC 332

Query: 211 MECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG 270
           +  K +  W  M+  + + +Y   AL +F  MR+  ++ D+  L N+IS  ++LG    G
Sbjct: 333 VVDKRLEIWNAMVAAYAENDYGYSALDLFGFMRQKSVLPDSFTLSNVISCCSVLGLYNYG 392

Query: 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
           K +HA++    +QS   + ++++ +YSKCG    +  VF  + EK +V+W ++ISG  +N
Sbjct: 393 KSVHAELFKRPIQSTSTIESALLTLYSKCGCDPDAYLVFKSMEEKDMVAWGSLISGLCKN 452

Query: 331 GCAREALNQFIKMRQEKTDSV--DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYR 388
           G  +EAL  F  M+ +  DS+  DS  + S+  A   L AL   LQ+HG   + G     
Sbjct: 453 GKFKEALKVFGDMKDDD-DSLKPDSDIMTSVTNACAGLEALRFGLQVHGSMIKTGLVLNV 511

Query: 389 SVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTE 448
            V + LI  YSKCG  ++A  VF  M    ++V+WN++I  Y  N   E ++ L++ M  
Sbjct: 512 FVGSSLIDLYSKCGLPEMALKVFTSMS-TENMVAWNSMISCYSRNNLPELSIDLFNLMLS 570

Query: 449 TGEVPDSSTYLSILNA 464
            G  PDS +  S+L A
Sbjct: 571 QGIFPDSVSITSVLVA 586



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 127/511 (24%), Positives = 240/511 (46%), Gaps = 37/511 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           DPY  + LLS Y K G + EAE +F  + +K +  W+ ++  Y+ N +   ++  F  M 
Sbjct: 306 DPYVCTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYAENDYGYSALDLFGFMR 365

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
              +LP+SFT+  V+   + L      +S+H  + K  ++S                   
Sbjct: 366 QKSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKRPIQSTSTIESALLTLYSKCGCDP 425

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGS--GLVPNAVTMLTVIRG 159
               +F+ ++   +V+  ++++G   N  F++A+ +F   +     L P++  M +V   
Sbjct: 426 DAYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVTNA 485

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C  L +      +HG  IK GL+L+V V +S++D+YS     + A+++F  M  +++++W
Sbjct: 486 CAGLEALRFGLQVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEMALKVFTSMSTENMVAW 545

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
             M+  +        ++ +F  M    I  D+V++ +++   +    L +GK LH   + 
Sbjct: 546 NSMISCYSRNNLPELSIDLFNLMLSQGIFPDSVSITSVLVAISSTASLLKGKSLHGYTLR 605

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G+ S+  L N++I MY KCG    + ++F ++  KSL++W  +I GY  +G    AL+ 
Sbjct: 606 LGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHKSLITWNLMIYGYGSHGDCITALSL 665

Query: 340 FIKMRQ--EKTDSVDSITLVSILTASGELAA----LEICLQLHGIAFEAGFPRYRSVQNC 393
           F +M++  E  D V  ++L+S    SG +       E   Q +GI  E     Y ++ + 
Sbjct: 666 FDEMKKAGESPDDVTFLSLISACNHSGFVEEGKNIFEFMKQDYGI--EPNMEHYANMVDL 723

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           L     + G ++ AY   + M    D   W  ++     + + E  +    K+    E  
Sbjct: 724 L----GRAGLLEEAYSFIKAMPIEADSSIWLCLLSASRTHHNVELGILSAEKLLRM-EPE 778

Query: 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIEE 484
             STY+ ++N    AGL N+   +   M E+
Sbjct: 779 RGSTYVQLINLYMEAGLKNEAAKLLGLMKEK 809



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 118/439 (26%), Positives = 207/439 (47%), Gaps = 18/439 (4%)

Query: 117 SCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAV-TMLTVIRGCVALGSRALCELIHGL 175
           S N+ +   I    + QA+ L++   GS     +V T  ++++ C AL + +  + IHG 
Sbjct: 26  SINSGIRALIQKGEYLQALHLYSKHDGSSPFWTSVFTFPSLLKACSALTNLSYGKTIHGS 85

Query: 176 TIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIF-------REMECKDVISWTRMMGLFVD 228
            + LG   D  +  S+++MY     LD A+Q+F         +  +DV  W  M+  +  
Sbjct: 86  VVVLGWRYDPFIATSLVNMYVKCGFLDYAVQVFDGWSQSQSGVSARDVTVWNSMIDGYFK 145

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKR--GKQLHAQVVLGGLQSEL 286
           F    + +  FR M    +  D  +L  ++SV    G+ +R  GKQ+H  ++   L ++ 
Sbjct: 146 FRRFKEGVGCFRRMLVFGVRPDAFSLSIVVSVMCKEGNFRREEGKQIHGFMLRNSLDTDS 205

Query: 287 RLSNSIIAMYSKCG-DLDSSRSVFNQITEKS-LVSWTAIISGYVQNGCAREALNQFIKMR 344
            L  ++I MY K G  +D+ R VF +I +KS +V W  +I G+  +G    +L+ ++  +
Sbjct: 206 FLKTALIDMYFKFGLSIDAWR-VFVEIEDKSNVVLWNVMIVGFGGSGICESSLDLYMLAK 264

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
                 V S +    L A  +        Q+H    + G      V   L+S YSKCG V
Sbjct: 265 NNSVKLV-STSFTGALGACSQSENSGFGRQIHCDVVKMGLHNDPYVCTSLLSMYSKCGMV 323

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
             A  VF  +   R  + WN ++  Y  N +G +AL L+  M +   +PDS T  ++++ 
Sbjct: 324 GEAETVFSCVVDKRLEI-WNAMVAAYAENDYGYSALDLFGFMRQKSVLPDSFTLSNVISC 382

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C   GL N G  +  ++ +   ++ +      ++ L ++ GC  DA  L  K +E     
Sbjct: 383 CSVLGLYNYGKSVHAELFKR-PIQSTSTIESALLTLYSKCGCDPDAY-LVFKSMEEKDMV 440

Query: 525 IWRALLSGCVLHVGRFQDA 543
            W +L+SG +   G+F++A
Sbjct: 441 AWGSLISG-LCKNGKFKEA 458


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  244 bits (624), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 164/591 (27%), Positives = 288/591 (48%), Gaps = 76/591 (12%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           ++S Y ++G+ + A  LFDE+PE+++VSW+++I GY  N    K+ + F       ++P 
Sbjct: 101 MISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFE------IMPE 154

Query: 71  SFTMVGVLVAAAGLQN--LELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINN 128
                   + +   QN  ++ ARS+             F+ +     VS NA+++ ++ N
Sbjct: 155 RDVCSWNTMLSGYAQNGCVDDARSV-------------FDRMPEKNDVSWNALLSAYVQN 201

Query: 129 KLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVN 188
              ++A +LF       LV     +   ++    + +R   + ++        + DV   
Sbjct: 202 SKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMN--------VRDVVSW 253

Query: 189 NSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRII 248
           N+++  Y+    +D A Q+F E   +DV +WT M+  ++      +A ++F         
Sbjct: 254 NTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELF--------- 304

Query: 249 CDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLS--NSIIAMYSKCGDLDSSR 306
            D +   N +S NA+L    +G+++     L  +     +S  N++I  Y++CG +  ++
Sbjct: 305 -DKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAK 363

Query: 307 SVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGEL 366
           ++F+++ ++  VSW A+I+GY Q+G + EAL  F++M +E    ++  +  S L+   ++
Sbjct: 364 NLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMERE-GGRLNRSSFSSALSTCADV 422

Query: 367 AALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTI 426
            ALE+  QLHG   + G+     V N L+  Y KCG+++ A  +F+EM   +D+VSWNT+
Sbjct: 423 VALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAG-KDIVSWNTM 481

Query: 427 IYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENK 486
           I GY  +G GE AL  +  M   G  PD +T +++L+AC H GL + G   F  M ++  
Sbjct: 482 IAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYG 541

Query: 487 VKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH---------- 536
           V P+ +HY C+VDLL RAG L DA  L   +       IW  LL    +H          
Sbjct: 542 VMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAA 601

Query: 537 -----------------------VGRFQDAEALRSGSQKKGIIKIPGISFL 564
                                   GR+ D   LR   + KG+ K+PG S++
Sbjct: 602 DKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWI 652



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 92/186 (49%), Gaps = 22/186 (11%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           PC +    + +++ Y + GKI EA+NLFD++P+++ VSW+ +I GYS +G   ++++ F 
Sbjct: 339 PCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFV 398

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES---------------- 104
            M   G   N  +    L   A +  LEL + +HG +VK G E+                
Sbjct: 399 QMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCG 458

Query: 105 ------DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                 DLF+ +    +VS N ++AG+  +   + A+  F   +  GL P+  TM+ V+ 
Sbjct: 459 SIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLS 518

Query: 159 GCVALG 164
            C   G
Sbjct: 519 ACSHTG 524



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 105/229 (45%), Gaps = 45/229 (19%)

Query: 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYV--------------------- 328
           N +I+ Y + G+ + +R +F+++ E+ LVSW  +I GYV                     
Sbjct: 99  NGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVC 158

Query: 329 ----------QNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGI 378
                     QNGC  +A + F +M  EK D    ++  ++L+A  + + +E    L   
Sbjct: 159 SWNTMLSGYAQNGCVDDARSVFDRM-PEKND----VSWNALLSAYVQNSKMEEACML--- 210

Query: 379 AFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGET 438
            F++         NCL+  + K   +  A   F+ M  +RDVVSWNTII GY  +G  + 
Sbjct: 211 -FKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMN-VRDVVSWNTIITGYAQSGKIDE 268

Query: 439 ALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKV 487
           A  L+    +   V D  T+ ++++      +  +   +F++M E N+V
Sbjct: 269 ARQLF----DESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEV 313



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 97/250 (38%), Gaps = 65/250 (26%)

Query: 241 EMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ--SELRLSNSIIAMYSK 298
           E+ K R +      L+  S+N +    +R    H       L+  ++ ++  S      K
Sbjct: 2   EINKFRALSRRAQQLHYTSLNGLK---RRCNNAHGAANFHSLKRATQTQIQKSQTKPLLK 58

Query: 299 CGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVS 358
           CGD D             +  W   IS Y++ G   EAL  F +M               
Sbjct: 59  CGDSD-------------IKEWNVAISSYMRTGRCNEALRVFKRM--------------- 90

Query: 359 ILTASGELAALEICLQLHGIAFEAGFPRYRSVQ-NCLISSYSKCGNVDLAYIVFEEMGFL 417
                                     PR+ SV  N +IS Y + G  +LA  +F+EM   
Sbjct: 91  --------------------------PRWSSVSYNGMISGYLRNGEFELARKLFDEMP-E 123

Query: 418 RDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVI 477
           RD+VSWN +I GY  N +   A  L+  M E     D  ++ ++L+     G  +D   +
Sbjct: 124 RDLVSWNVMIKGYVRNRNLGKARELFEIMPER----DVCSWNTMLSGYAQNGCVDDARSV 179

Query: 478 FNQMIEENKV 487
           F++M E+N V
Sbjct: 180 FDRMPEKNDV 189


>gi|224122888|ref|XP_002318941.1| predicted protein [Populus trichocarpa]
 gi|222857317|gb|EEE94864.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score =  244 bits (624), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 143/438 (32%), Positives = 244/438 (55%), Gaps = 12/438 (2%)

Query: 105 DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLF-NFFRGSGLVPNAVTMLTVIRGCVAL 163
           +LF+ +    +V+   +++G+ +   + QA  +F +  +     PNA T+ +V++ C  +
Sbjct: 65  NLFDEMPERDVVAWTTMISGYTHCNEYTQAWSVFVDMVKNGNDPPNAFTISSVLKACKGM 124

Query: 164 GSRALC-ELIHGLTIKLGLILD-VSVNNSVLDMY-SCLMDLDAAIQIFREMECKDVISWT 220
             R  C  L+HGL IK   +   + V+N+++DMY SC + +  A  +F +++ K+V+SWT
Sbjct: 125 -KRVFCGRLVHGLAIKRRFMEGFIYVDNALMDMYASCGVGMRDACVVFHDIKEKNVVSWT 183

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++  +        AL+IFREM    +  +  ++   +   A +G    G+Q+H  V+  
Sbjct: 184 TLIAGYTHRGNGNRALQIFREMLLDGVALNPHSISIAVRACASIGSQNFGRQIHTAVIKH 243

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           G +S+L ++NSI+ MY +CG L  +   FN +TEK L++W  +I+GY ++    +++  F
Sbjct: 244 GFESDLPVTNSILDMYCRCGCLSEANKYFNDMTEKDLITWNTLIAGYERS----DSIEPF 299

Query: 341 IKMRQEKTD--SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
               Q +++  S +  T  S++ A    AAL+   Q+HG  F  G      + N LI  Y
Sbjct: 300 FIFSQMESEGFSPNCFTFTSLVAACANAAALQCGQQVHGGIFRRGLDGNLELANALIDMY 359

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
           +KCGN+  +   F EM    ++VSW +++ GYG +G+G+ A+ L+ +M  +G  PD   +
Sbjct: 360 AKCGNIIDSQKNFSEMS-CTNLVSWTSMMIGYGTHGYGKEAVELFDEMVRSGIRPDQVVF 418

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
           +++L+AC HAGL + GL   N MI +  +KP+QE YGCVVDLL R G + DA  L   + 
Sbjct: 419 MAVLHACSHAGLVDQGLRYINCMINDYHIKPNQEIYGCVVDLLGRPGRVEDAYQLIRSMP 478

Query: 519 EGMGPNIWRALLSGCVLH 536
                ++W ALL  C  H
Sbjct: 479 FMADESVWGALLGACKAH 496



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 118/446 (26%), Positives = 222/446 (49%), Gaps = 28/446 (6%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSG- 66
           ++ LL +YF+ G   +A NLFDE+PE++VV+W+ +I GY+    + ++   F  M+ +G 
Sbjct: 47  ATDLLKSYFERGLTSQARNLFDEMPERDVVAWTTMISGYTHCNEYTQAWSVFVDMVKNGN 106

Query: 67  LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK----------------------FGLES 104
             PN+FT+  VL A  G++ +   R +HGL +K                       G+  
Sbjct: 107 DPPNAFTISSVLKACKGMKRVFCGRLVHGLAIKRRFMEGFIYVDNALMDMYASCGVGMRD 166

Query: 105 D--LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA 162
              +F  +K   +VS   ++AG+ +     +A+ +F      G+  N  ++   +R C +
Sbjct: 167 ACVVFHDIKEKNVVSWTTLIAGYTHRGNGNRALQIFREMLLDGVALNPHSISIAVRACAS 226

Query: 163 LGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
           +GS+     IH   IK G   D+ V NS+LDMY     L  A + F +M  KD+I+W  +
Sbjct: 227 IGSQNFGRQIHTAVIKHGFESDLPVTNSILDMYCRCGCLSEANKYFNDMTEKDLITWNTL 286

Query: 223 MGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL 282
           +  + +   + +   IF +M       +     +L++  A    L+ G+Q+H  +   GL
Sbjct: 287 IAGY-ERSDSIEPFFIFSQMESEGFSPNCFTFTSLVAACANAAALQCGQQVHGGIFRRGL 345

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
              L L+N++I MY+KCG++  S+  F++++  +LVSWT+++ GY  +G  +EA+  F +
Sbjct: 346 DGNLELANALIDMYAKCGNIIDSQKNFSEMSCTNLVSWTSMMIGYGTHGYGKEAVELFDE 405

Query: 343 MRQEKTDSVDSITLVSILTASGELAALEICLQ-LHGIAFEAGFPRYRSVQNCLISSYSKC 401
           M +      D +  +++L A      ++  L+ ++ +  +      + +  C++    + 
Sbjct: 406 MVRSGIRP-DQVVFMAVLHACSHAGLVDQGLRYINCMINDYHIKPNQEIYGCVVDLLGRP 464

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTII 427
           G V+ AY +   M F+ D   W  ++
Sbjct: 465 GRVEDAYQLIRSMPFMADESVWGALL 490



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 139/288 (48%), Gaps = 24/288 (8%)

Query: 6   YNSSKLLSNYFKSG-KIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML 64
           Y  + L+  Y   G  +++A  +F +I EKNVVSW+ +I GY+  G   ++++ F  M+L
Sbjct: 148 YVDNALMDMYASCGVGMRDACVVFHDIKEKNVVSWTTLIAGYTHRGNGNRALQIFREMLL 207

Query: 65  SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL------------------ 106
            G+  N  ++   + A A + +    R IH  ++K G ESDL                  
Sbjct: 208 DGVALNPHSISIAVRACASIGSQNFGRQIHTAVIKHGFESDLPVTNSILDMYCRCGCLSE 267

Query: 107 ----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA 162
               F  +    L++ N ++AG+  +    +   +F+     G  PN  T  +++  C  
Sbjct: 268 ANKYFNDMTEKDLITWNTLIAGYERSDSI-EPFFIFSQMESEGFSPNCFTFTSLVAACAN 326

Query: 163 LGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
             +    + +HG   + GL  ++ + N+++DMY+   ++  + + F EM C +++SWT M
Sbjct: 327 AAALQCGQQVHGGIFRRGLDGNLELANALIDMYAKCGNIIDSQKNFSEMSCTNLVSWTSM 386

Query: 223 MGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG 270
           M  +    Y  +A+++F EM +S I  D V  + ++   +  G + +G
Sbjct: 387 MIGYGTHGYGKEAVELFDEMVRSGIRPDQVVFMAVLHACSHAGLVDQG 434



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 121/247 (48%), Gaps = 5/247 (2%)

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
           L+  ++  Y + G    +R++F+++ E+ +V+WT +ISGY       +A + F+ M +  
Sbjct: 46  LATDLLKSYFERGLTSQARNLFDEMPERDVVAWTTMISGYTHCNEYTQAWSVFVDMVKNG 105

Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPR-YRSVQNCLISSYSKCG-NVD 405
            D  ++ T+ S+L A   +  +     +HG+A +  F   +  V N L+  Y+ CG  + 
Sbjct: 106 NDPPNAFTISSVLKACKGMKRVFCGRLVHGLAIKRRFMEGFIYVDNALMDMYASCGVGMR 165

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            A +VF ++   ++VVSW T+I GY   G+G  AL ++ +M   G   +  +    + AC
Sbjct: 166 DACVVFHDIK-EKNVVSWTTLIAGYTHRGNGNRALQIFREMLLDGVALNPHSISIAVRAC 224

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI 525
              G  N G  I   +I+    +        ++D+  R GCLS+A+     + E      
Sbjct: 225 ASIGSQNFGRQIHTAVIKHG-FESDLPVTNSILDMYCRCGCLSEANKYFNDMTE-KDLIT 282

Query: 526 WRALLSG 532
           W  L++G
Sbjct: 283 WNTLIAG 289



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 137/291 (47%), Gaps = 27/291 (9%)

Query: 204 AIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAI 263
           A  +F EM  +DV++WT M+  +        A  +F +M K     +     N  +++++
Sbjct: 63  ARNLFDEMPERDVVAWTTMISGYTHCNEYTQAWSVFVDMVK-----NGNDPPNAFTISSV 117

Query: 264 LGDLKRGKQLHAQVVLGGLQSELR-------LSNSIIAMYSKCG-DLDSSRSVFNQITEK 315
           L   K  K++    ++ GL  + R       + N+++ MY+ CG  +  +  VF+ I EK
Sbjct: 118 LKACKGMKRVFCGRLVHGLAIKRRFMEGFIYVDNALMDMYASCGVGMRDACVVFHDIKEK 177

Query: 316 SLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQL 375
           ++VSWT +I+GY   G    AL  F +M  +   +++  ++   + A   + +     Q+
Sbjct: 178 NVVSWTTLIAGYTHRGNGNRALQIFREMLLDGV-ALNPHSISIAVRACASIGSQNFGRQI 236

Query: 376 HGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGH 435
           H    + GF     V N ++  Y +CG +  A   F +M   +D+++WNT+I GY  +  
Sbjct: 237 HTAVIKHGFESDLPVTNSILDMYCRCGCLSEANKYFNDMT-EKDLITWNTLIAGYERSDS 295

Query: 436 GETALALYHKMTETGEVPDSSTYLSILNA--------CG---HAGLTNDGL 475
            E    ++ +M   G  P+  T+ S++ A        CG   H G+   GL
Sbjct: 296 IE-PFFIFSQMESEGFSPNCFTFTSLVAACANAAALQCGQQVHGGIFRRGL 345


>gi|356502497|ref|XP_003520055.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 852

 Score =  244 bits (624), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 171/621 (27%), Positives = 295/621 (47%), Gaps = 65/621 (10%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYS-----------INGF--- 51
           ++S++LL+   KSG+I +A  LFD++ +++  +W+ ++ GY+            NGF   
Sbjct: 116 FHSNQLLNGLSKSGQIDDARELFDKMLQRDEYTWNTMVSGYANVGRLVEARELFNGFSSR 175

Query: 52  -----------------HEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIH 94
                              ++   F  M L G  P+ +T+  +L   + L  ++    IH
Sbjct: 176 SSITWSSLISGYCRFGRQAEAFDLFKRMRLEGQKPSQYTLGSILRGCSALGLIQKGEMIH 235

Query: 95  GLMVKFGLESDLF--EGLKNPYL----------------------VSCNAIVAGFINNKL 130
           G +VK G ES+++   GL + Y                       V   A+V G+  N  
Sbjct: 236 GYVVKNGFESNVYVVAGLVDMYAKCRHISEAEILFKGLAFNKGNHVLWTAMVTGYAQNGD 295

Query: 131 FQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNS 190
             +A+  F +    G+  N  T  +++  C ++ +    E +HG  ++ G   +  V ++
Sbjct: 296 DHKAIEFFRYMHTEGVESNQFTFPSILTACSSVSAHCFGEQVHGCIVRNGFGCNAYVQSA 355

Query: 191 VLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICD 250
           ++DMY+   DL +A ++   ME  DV+SW  M+   V   +  +A+ +F++M    +  D
Sbjct: 356 LVDMYAKCGDLGSAKRVLENMEDDDVVSWNSMIVGCVRHGFEEEAILLFKKMHARNMKID 415

Query: 251 TVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFN 310
                ++++   I+G +  GK +H  V+  G ++   +SN+++ MY+K  DL+ + +VF 
Sbjct: 416 HYTFPSVLNC-CIVGRID-GKSVHCLVIKTGFENYKLVSNALVDMYAKTEDLNCAYAVFE 473

Query: 311 QITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALE 370
           ++ EK ++SWT++++GY QNG   E+L  F  MR     S D   + SIL+A  EL  LE
Sbjct: 474 KMFEKDVISWTSLVTGYTQNGSHEESLKTFCDMRISGV-SPDQFIVASILSACAELTLLE 532

Query: 371 ICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGY 430
              Q+H    + G     SV N L++ Y+KCG +D A  +F  M  +RDV++W  +I GY
Sbjct: 533 FGKQVHSDFIKLGLRSSLSVNNSLVTMYAKCGCLDDADAIFVSM-HVRDVITWTALIVGY 591

Query: 431 GVNGHGETALALYHKMTET-GEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKP 489
             NG G  +L  + +M +  G  P    Y  +++  G  G  ++   I NQM     VKP
Sbjct: 592 ARNGKGRDSLKYFQQMKKIYGIEPGPEHYACMIDLFGRLGKLDEAKEILNQM----DVKP 647

Query: 490 SQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN-IWRALLSGCVLHVGRFQDAEALRS 548
               +  ++      G L      A  L E    N +   +LS   L   ++ DA  +R 
Sbjct: 648 DATVWKALLAACRVHGNLELGERAATNLFELEPMNAMPYVMLSNMYLAARKWDDAAKIRR 707

Query: 549 GSQKKGIIKIPGISFLNSTSR 569
             + KGI K PG S++   SR
Sbjct: 708 LMKSKGITKEPGCSWIEMNSR 728


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  244 bits (623), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 169/580 (29%), Positives = 285/580 (49%), Gaps = 35/580 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIP-EKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           D + ++ L++ Y   G + EA  +FDE   E+N VSW+ ++  Y  N     ++K F  M
Sbjct: 134 DIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDRCSHAVKVFGEM 193

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY------ 114
           +  G+ PN F    V+ A  G ++LE  R +H ++++ G + D+F    L + Y      
Sbjct: 194 VWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLGDI 253

Query: 115 --------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                         +VS NA ++G + +   Q A+ L    + SGLVPN  T+ ++++ C
Sbjct: 254 RMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKAC 313

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
              G+  L   IHG  +K     D  +   ++DMY+    LD A ++F  +  +D++ W 
Sbjct: 314 AGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWN 373

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++          +AL +F  MRK     +   L  ++   A L  +   +Q+HA     
Sbjct: 374 ALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISDTRQVHALAEKL 433

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           G  S+  + N +I  Y KC  L+ +  VF +     ++++T++I+   Q     +A+  F
Sbjct: 434 GFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMITALSQCDHGEDAIKLF 493

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
           ++M ++  D  D   L S+L A   L+A E   Q+H    +  F       N L+ +Y+K
Sbjct: 494 MEMLRKGLDP-DPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDVFAGNALVYTYAK 552

Query: 401 CGNV---DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           CG++   DLA+    E G    VVSW+ +I G   +GHG+ AL ++H+M +    P+  T
Sbjct: 553 CGSIEDADLAFSGLPEKG----VVSWSAMIGGLAQHGHGKRALDVFHRMVDEHISPNHIT 608

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL 517
             S+L AC HAGL ++    FN M E   ++ ++EHY C++DLL RAG L DA  L   +
Sbjct: 609 MTSVLCACNHAGLVDEAKRYFNSMKEMFGIERTEEHYACMIDLLGRAGKLDDAMELVNSM 668

Query: 518 LEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIK 557
                  +W ALL+   +H    +D E  R  ++K  I++
Sbjct: 669 PFQTNAAVWGALLAASRVH----RDPELGRLAAEKLFILE 704



 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 162/554 (29%), Positives = 255/554 (46%), Gaps = 36/554 (6%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + LLS Y K      A  +FDEIP+   VSWS ++  YS N     ++ AF  M    + 
Sbjct: 41  NHLLSFYSKCRLPGSARRVFDEIPDPCHVSWSSLVTAYSNNAMPRDALGAFRSMRSCSVR 100

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--------------------- 107
            N F +  VL  A    +      +H L +  GL  D+F                     
Sbjct: 101 CNEFVLPVVLKCAP---DAGFGTQLHALAMATGLGGDIFVANALVAMYGGFGFVDEARMV 157

Query: 108 --EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
             E       VS N +++ ++ N     AV +F      G+ PN      V+  C   GS
Sbjct: 158 FDEAGCERNTVSWNGLMSAYVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACT--GS 215

Query: 166 RAL--CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
           R L     +H + I+ G   DV   N+++DMYS L D+  A  +F ++   DV+SW   +
Sbjct: 216 RDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFI 275

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
              V   +   AL++  +M+ S ++ +   L +++   A  G    G+Q+H  +V     
Sbjct: 276 SGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANAD 335

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
           S+  ++  ++ MY+K G LD ++ VF+ I ++ LV W A+ISG        EAL+ F +M
Sbjct: 336 SDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRM 395

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
           R+E  D V+  TL ++L ++  L A+    Q+H +A + GF     V N LI SY KC  
Sbjct: 396 RKEGFD-VNRTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDC 454

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           ++ AY VFE+ G   D++++ ++I       HGE A+ L+ +M   G  PD     S+LN
Sbjct: 455 LNYAYRVFEKHGSY-DIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLN 513

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYG-CVVDLLARAGCLSDASGLAGKLLEGMG 522
           AC        G  +   +I+   +  S    G  +V   A+ G + DA  LA   L   G
Sbjct: 514 ACASLSAYEQGKQVHAHLIKRQFM--SDVFAGNALVYTYAKCGSIEDAD-LAFSGLPEKG 570

Query: 523 PNIWRALLSGCVLH 536
              W A++ G   H
Sbjct: 571 VVSWSAMIGGLAQH 584



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 139/508 (27%), Positives = 245/508 (48%), Gaps = 26/508 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + ++ L+  Y K G I+ A  +F ++PE +VVSW+  I G  ++G  + +++    M 
Sbjct: 236 DVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMK 295

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
            SGL+PN FT+  +L A AG     L R IHG MVK   +SD                  
Sbjct: 296 SSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLD 355

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +F+ +    LV  NA+++G  +     +A+ LF   R  G   N  T+  V++   
Sbjct: 356 DAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTA 415

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
           +L + +    +H L  KLG + D  V N ++D Y     L+ A ++F +    D+I++T 
Sbjct: 416 SLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTS 475

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+      ++  DA+K+F EM +  +  D   L +L++  A L   ++GKQ+HA ++   
Sbjct: 476 MITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQ 535

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
             S++   N+++  Y+KCG ++ +   F+ + EK +VSW+A+I G  Q+G  + AL+ F 
Sbjct: 536 FMSDVFAGNALVYTYAKCGSIEDADLAFSGLPEKGVVSWSAMIGGLAQHGHGKRALDVFH 595

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEA-GFPRYRSVQNCLISSYSK 400
           +M  E   S + IT+ S+L A      ++   +      E  G  R      C+I    +
Sbjct: 596 RMVDEHI-SPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIERTEEHYACMIDLLGR 654

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
            G +D A  +   M F  +   W  ++    V+   E       K+    E   S T++ 
Sbjct: 655 AGKLDDAMELVNSMPFQTNAAVWGALLAASRVHRDPELGRLAAEKLF-ILEPEKSGTHVL 713

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVK 488
           + N    AG+ +D +    ++++++KVK
Sbjct: 714 LANTYASAGMWDD-VAKVRKLMKDSKVK 740



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 114/388 (29%), Positives = 188/388 (48%), Gaps = 17/388 (4%)

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           IH   +K GL       N +L  YS      +A ++F E+     +SW+ ++  + +   
Sbjct: 26  IHAHLLKSGLF--AVFRNHLLSFYSKCRLPGSARRVFDEIPDPCHVSWSSLVTAYSNNAM 83

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
             DAL  FR MR   + C+   L  ++       D   G QLHA  +  GL  ++ ++N+
Sbjct: 84  PRDALGAFRSMRSCSVRCNEFVLPVVLKCAP---DAGFGTQLHALAMATGLGGDIFVANA 140

Query: 292 IIAMYSKCGDLDSSRSVFNQI-TEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDS 350
           ++AMY   G +D +R VF++   E++ VSW  ++S YV+N     A+  F +M       
Sbjct: 141 LVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDRCSHAVKVFGEMVWGGVQP 200

Query: 351 VDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIV 410
            +      ++ A      LE   ++H +    G+ +     N L+  YSK G++ +A +V
Sbjct: 201 -NEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVV 259

Query: 411 FEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGL 470
           F ++    DVVSWN  I G  ++GH + AL L  +M  +G VP+  T  SIL AC  +G 
Sbjct: 260 FGKVP-ETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGA 318

Query: 471 TNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN---IWR 527
            N G  I   M++ N    +   +G +VD+ A+ G L DA     K+ + +      +W 
Sbjct: 319 FNLGRQIHGFMVKANADSDNYIAFG-LVDMYAKHGLLDDAK----KVFDWIPQRDLVLWN 373

Query: 528 ALLSGCVLHVGRFQDAEALRSGSQKKGI 555
           AL+SGC  H  +  +A +L    +K+G 
Sbjct: 374 ALISGCS-HGAQHAEALSLFCRMRKEGF 400



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 144/310 (46%), Gaps = 11/310 (3%)

Query: 257 LISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKS 316
           L++  A    L +G  +HA ++  GL +  R  N +++ YSKC    S+R VF++I +  
Sbjct: 10  LLTRYAATQSLLQGAHIHAHLLKSGLFAVFR--NHLLSFYSKCRLPGSARRVFDEIPDPC 67

Query: 317 LVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLH 376
            VSW+++++ Y  N   R+AL  F  MR       +   L  +L  + +        QLH
Sbjct: 68  HVSWSSLVTAYSNNAMPRDALGAFRSMRSCSV-RCNEFVLPVVLKCAPDAG---FGTQLH 123

Query: 377 GIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHG 436
            +A   G      V N L++ Y   G VD A +VF+E G  R+ VSWN ++  Y  N   
Sbjct: 124 ALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDRC 183

Query: 437 ETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGC 496
             A+ ++ +M   G  P+   +  ++NAC  +     G  +   +I     K        
Sbjct: 184 SHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFT-ANA 242

Query: 497 VVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGII 556
           +VD+ ++ G +  A+ + GK+ E      W A +SGCVLH     D  AL    Q K   
Sbjct: 243 LVDMYSKLGDIRMAAVVFGKVPE-TDVVSWNAFISGCVLHG---HDQHALELLLQMKSSG 298

Query: 557 KIPGISFLNS 566
            +P +  L+S
Sbjct: 299 LVPNVFTLSS 308


>gi|357483943|ref|XP_003612258.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513593|gb|AES95216.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 907

 Score =  244 bits (623), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 169/624 (27%), Positives = 300/624 (48%), Gaps = 96/624 (15%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEK-NVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           D ++ + +++ Y + G +++A  LF+ +P+K +   W+ +I GY+  G  + + K F  M
Sbjct: 109 DNFSWALMITCYTRKGMLEKARELFELVPDKLDTACWNAMIAGYAKKGRFDDAEKVFEKM 168

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIV 122
            +  L+  +  + G        QN ++     GL +KF      FE +    +VS N +V
Sbjct: 169 PVKDLVSYNSMLAGYT------QNGKM-----GLAMKF------FERMAERNVVSWNLMV 211

Query: 123 AGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLI 182
           AGF+NN     A  LF         PNAV+ +T++ G             HG  ++   +
Sbjct: 212 AGFVNNCDLGSAWELFEKIPD----PNAVSWVTMLCGFAR----------HGKIVEARKL 257

Query: 183 LD------VSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDAL 236
            D      V   N+++  Y   + +D A+++F+E   KD +SWT M+  +V      +A 
Sbjct: 258 FDRMPCKNVVSWNAMIAAYVQDLQIDEAVKLFKETPYKDCVSWTTMINGYVRVGKLDEAR 317

Query: 237 KIFREMRKSRIICDTVALLNLIS------VNAILGDLKRGKQLHAQVVLGGLQSELRLS- 289
           +++ +M    +   T  +  LI        + +   L +   +    ++ G     R+S 
Sbjct: 318 EVYNQMPYKDVAAKTALMSGLIQNGRIDEASQVFSQLNKRDAICWNSMIAGYCQSGRMSE 377

Query: 290 ----------------NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA 333
                           N++I+ Y++ G++D +  +F  +  ++++SW ++I+G++QNG  
Sbjct: 378 ALNLFRQMPVKNAVSWNTMISGYAQAGEMDRATEIFEAMGVRNVISWNSLITGFLQNGLY 437

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC 393
            +AL   + M QE     D  T    L++   LAAL++  QLH +  ++G+     V N 
Sbjct: 438 LDALKSLVLMGQEGKKP-DQSTFACSLSSCANLAALQVGKQLHELILKSGYINDLFVSNA 496

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           LI+ Y+KCG V  A  VF+++  + D++SWN++I GY +NG+   A   + +M+  G VP
Sbjct: 497 LIAMYAKCGGVQSAEKVFKDIEGV-DLISWNSLISGYALNGYANEAFWAFEQMSSEGTVP 555

Query: 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL 513
           D  T++ +L+AC HAGLTN G+ +F  MIE   ++P  EHY C+VDLL R G L +A  +
Sbjct: 556 DEVTFIGMLSACSHAGLTNQGVDLFKCMIEGFAIEPLAEHYSCLVDLLGRMGRLEEAFNI 615

Query: 514 AGKLLEGMGPNIWRALLSGCVLH---------------------------------VGRF 540
              +       +W +LL+ C +H                                  GR+
Sbjct: 616 VRGMKVKANAGLWGSLLAACRVHKNMELGKIAALRLLELEPHNASNYITLSNMHAEAGRW 675

Query: 541 QDAEALRSGSQKKGIIKIPGISFL 564
           +D E LR   +++   K+PG S++
Sbjct: 676 EDVERLRVLMRERRAGKLPGCSWI 699



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 134/537 (24%), Positives = 231/537 (43%), Gaps = 92/537 (17%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  D  + + +L+ Y ++GK+  A   F+ + E+NVVSW++++ G+  N     + + F 
Sbjct: 169 PVKDLVSYNSMLAGYTQNGKMGLAMKFFERMAERNVVSWNLMVAGFVNNCDLGSAWELFE 228

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNA 120
            +      PN+ + V +L   A           HG +V+      LF+ +    +VS NA
Sbjct: 229 KIP----DPNAVSWVTMLCGFAR----------HGKIVE---ARKLFDRMPCKNVVSWNA 271

Query: 121 IVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS--------------- 165
           ++A ++ +    +AV LF          + V+  T+I G V +G                
Sbjct: 272 MIAAYVQDLQIDEAVKLFK----ETPYKDCVSWTTMINGYVRVGKLDEAREVYNQMPYKD 327

Query: 166 ------------------------------RALC--ELIHG------LTIKLGLILDVSV 187
                                          A+C   +I G      ++  L L   + V
Sbjct: 328 VAAKTALMSGLIQNGRIDEASQVFSQLNKRDAICWNSMIAGYCQSGRMSEALNLFRQMPV 387

Query: 188 NNSV-----LDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREM 242
            N+V     +  Y+   ++D A +IF  M  ++VISW  ++  F+      DALK    M
Sbjct: 388 KNAVSWNTMISGYAQAGEMDRATEIFEAMGVRNVISWNSLITGFLQNGLYLDALKSLVLM 447

Query: 243 RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDL 302
            +     D       +S  A L  L+ GKQLH  ++  G  ++L +SN++IAMY+KCG +
Sbjct: 448 GQEGKKPDQSTFACSLSSCANLAALQVGKQLHELILKSGYINDLFVSNALIAMYAKCGGV 507

Query: 303 DSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTA 362
            S+  VF  I    L+SW ++ISGY  NG A EA   F +M  E T   D +T + +L+A
Sbjct: 508 QSAEKVFKDIEGVDLISWNSLISGYALNGYANEAFWAFEQMSSEGT-VPDEVTFIGMLSA 566

Query: 363 ------SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGF 416
                 + +   L  C+ + G A E     Y    +CL+    + G ++ A+ +   M  
Sbjct: 567 CSHAGLTNQGVDLFKCM-IEGFAIEPLAEHY----SCLVDLLGRMGRLEEAFNIVRGMKV 621

Query: 417 LRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTND 473
             +   W +++    V+ + E       ++ E  E  ++S Y+++ N    AG   D
Sbjct: 622 KANAGLWGSLLAACRVHKNMELGKIAALRLLEL-EPHNASNYITLSNMHAEAGRWED 677



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 98/199 (49%), Gaps = 10/199 (5%)

Query: 268 KRGKQLHAQVVLGG-LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISG 326
           K+GK   A+ V    +       NS++ +++K G +  +R +F+++++++LVSW  +I+G
Sbjct: 29  KQGKIDEAKRVFSNVIHKNHATYNSMVTVFAKNGRVSDARQLFDKMSQRNLVSWNTMIAG 88

Query: 327 YVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPR 386
           Y+ N    EA   F  M +   D+     +++  T  G L       +L     +     
Sbjct: 89  YLHNNMVEEAHKLFDLMAER--DNFSWALMITCYTRKGMLEKARELFELVPDKLDT---- 142

Query: 387 YRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM 446
             +  N +I+ Y+K G  D A  VFE+M  ++D+VS+N+++ GY  NG    A+  + +M
Sbjct: 143 --ACWNAMIAGYAKKGRFDDAEKVFEKMP-VKDLVSYNSMLAGYTQNGKMGLAMKFFERM 199

Query: 447 TETGEVPDSSTYLSILNAC 465
            E   V  +      +N C
Sbjct: 200 AERNVVSWNLMVAGFVNNC 218


>gi|296089801|emb|CBI39620.3| unnamed protein product [Vitis vinifera]
          Length = 591

 Score =  244 bits (623), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 138/418 (33%), Positives = 221/418 (52%), Gaps = 4/418 (0%)

Query: 121 IVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLG 180
           ++AG+ +      A ++F       L PNA T+ +V++ C  +   +   L+HGL IK G
Sbjct: 64  MIAGYTSCNNHTHAWMVFCEMMNEELDPNAFTISSVLKACKGMKCLSYGRLVHGLAIKHG 123

Query: 181 LILDVSVNNSVLDMY-SCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIF 239
           L   + V+N+++DMY +C + +D A  +FR +  K+ +SWT ++  +   +     L++F
Sbjct: 124 LDGFIYVDNALMDMYATCCVSMDDACMVFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVF 183

Query: 240 REMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKC 299
           R+M    +  +  +    +     +G    G+QLHA V   G +S L + NSI+ MY +C
Sbjct: 184 RQMLLEEVELNPFSFSIAVRACTSIGSHTFGEQLHAAVTKHGFESNLPVMNSILDMYCRC 243

Query: 300 GDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSI 359
                +   F ++ ++ L++W  +I+GY ++    E+L  F  M  E   S +  T  SI
Sbjct: 244 SCFSEANRYFYEMNQRDLITWNTLIAGYERSN-PTESLYVFSMMESEGF-SPNCFTFTSI 301

Query: 360 LTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRD 419
           + A   LA L    Q+HG     G     ++ N LI  YSKCGN+  ++ VF  M   RD
Sbjct: 302 MAACATLAFLNCGQQIHGRIIRRGLDGNLALSNALIDMYSKCGNIADSHQVFGGMS-RRD 360

Query: 420 VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFN 479
           +VSW  ++ GYG +G+GE A+ L+ KM  +G  PD   +++IL+AC HAGL ++GL  F 
Sbjct: 361 LVSWTAMMIGYGTHGYGEEAVELFDKMVRSGIRPDRVVFMAILSACSHAGLVDEGLRYFK 420

Query: 480 QMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHV 537
            M+ +  + P QE YGCVVDLL RAG + +A  L   +       +W   L  C  H 
Sbjct: 421 LMVGDYNISPDQEIYGCVVDLLGRAGKVEEAYELIESMPFKPDECVWGPFLGACKAHT 478



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 115/444 (25%), Positives = 197/444 (44%), Gaps = 42/444 (9%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ L+ +YF  G I EA                ++I GY+    H  +   F  MM   L
Sbjct: 46  ATTLIKSYFGKGLIGEA----------------LMIAGYTSCNNHTHAWMVFCEMMNEEL 89

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL--------------------- 106
            PN+FT+  VL A  G++ L   R +HGL +K GL+  +                     
Sbjct: 90  DPNAFTISSVLKACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATCCVSMDDAC 149

Query: 107 --FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
             F G+     VS   ++AG+ +       + +F       +  N  +    +R C ++G
Sbjct: 150 MVFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRACTSIG 209

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
           S    E +H    K G   ++ V NS+LDMY        A + F EM  +D+I+W  ++ 
Sbjct: 210 SHTFGEQLHAAVTKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLITWNTLIA 269

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            + +     ++L +F  M       +     ++++  A L  L  G+Q+H +++  GL  
Sbjct: 270 GY-ERSNPTESLYVFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRRGLDG 328

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
            L LSN++I MYSKCG++  S  VF  ++ + LVSWTA++ GY  +G   EA+  F KM 
Sbjct: 329 NLALSNALIDMYSKCGNIADSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVELFDKMV 388

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAF-EAGFPRYRSVQNCLISSYSKCGN 403
           +      D +  ++IL+A      ++  L+   +   +      + +  C++    + G 
Sbjct: 389 RSGIRP-DRVVFMAILSACSHAGLVDEGLRYFKLMVGDYNISPDQEIYGCVVDLLGRAGK 447

Query: 404 VDLAYIVFEEMGFLRDVVSWNTII 427
           V+ AY + E M F  D   W   +
Sbjct: 448 VEEAYELIESMPFKPDECVWGPFL 471



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 109/246 (44%), Gaps = 37/246 (15%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + +L  Y +     EA   F E+ ++++++W+ +I GY  +   E S+  FS M   G  
Sbjct: 234 NSILDMYCRCSCFSEANRYFYEMNQRDLITWNTLIAGYERSNPTE-SLYVFSMMESEGFS 292

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------------- 106
           PN FT   ++ A A L  L   + IHG +++ GL+ +L                      
Sbjct: 293 PNCFTFTSIMAACATLAFLNCGQQIHGRIIRRGLDGNLALSNALIDMYSKCGNIADSHQV 352

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           F G+    LVS  A++ G+  +   ++AV LF+    SG+ P+ V  + ++  C   G  
Sbjct: 353 FGGMSRRDLVSWTAMMIGYGTHGYGEEAVELFDKMVRSGIRPDRVVFMAILSACSHAGL- 411

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDL-------DAAIQIFREMECK-DVIS 218
               +  GL     ++ D +++    ++Y C++DL       + A ++   M  K D   
Sbjct: 412 ----VDEGLRYFKLMVGDYNISPD-QEIYGCVVDLLGRAGKVEEAYELIESMPFKPDECV 466

Query: 219 WTRMMG 224
           W   +G
Sbjct: 467 WGPFLG 472


>gi|449465795|ref|XP_004150613.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
          Length = 603

 Score =  244 bits (623), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 167/573 (29%), Positives = 270/573 (47%), Gaps = 81/573 (14%)

Query: 63  MLSG--LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--------------- 105
           MLS   +L N    V  L + A  QNL   + +H LM+ +G                   
Sbjct: 1   MLSAIQMLNNVTKCVAFLQSCADHQNLNKGKQLHSLMITYGFSPSPPSITSLINMYSKCG 60

Query: 106 --------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
                    ++      + + NAI++GF++N L  +    +   R  G++P+  T   V+
Sbjct: 61  QMGEAILVFYDPCHERNVFAYNAIISGFVSNGLASKGFQFYKKMRLEGVMPDKYTFPCVV 120

Query: 158 RGCVALGSRALCEL-----IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME 212
           R C        CE+     IHG  +K+GL LDV V +++++ Y     ++ A ++F E+ 
Sbjct: 121 RTC--------CEVMEVKKIHGCLLKMGLELDVFVGSALVNTYLKNGSMEDAQKVFGELS 172

Query: 213 CKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQ 272
            +DV+ W  M+  +       +AL++FR M    +      +  ++SV A  GDL  GK 
Sbjct: 173 IRDVVLWNAMINGYAKIGCLDEALEVFRRMHVKGVAPSRFTITGILSVFASRGDLDNGKT 232

Query: 273 LHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC 332
           +H  V+  G  S + +SN++I MY KC  +  +  +F  I EK + SW +IIS + Q G 
Sbjct: 233 VHGIVMKMGYDSGVSVSNALIDMYGKCKHIGDALIIFEMINEKDIFSWNSIISVHEQCGD 292

Query: 333 AREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYR---S 389
               L  F KM        D +T+ ++L A   LAAL    ++HG     G  +     +
Sbjct: 293 HDGTLRLFDKMLGSGILP-DLVTITTVLPACSHLAALMHGREIHGYMIINGLGKDDENGA 351

Query: 390 VQNCLISS-----YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH 444
           V N L+S+     Y+KCG+++ A  +F+ M   +DV SWN +I GYG++G+   AL ++ 
Sbjct: 352 VDNLLVSNAVMDMYAKCGSMNNALKIFDSMS-KKDVASWNIMIMGYGMHGYALEALGMFS 410

Query: 445 KMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARA 504
           +M E    P+  T + +L+AC HAG  + G +   QM     V P+ EHY CV+D+L RA
Sbjct: 411 QMCEAEFKPNEVTLVGVLSACNHAGFVSHGRLFLAQMESTFGVIPTIEHYTCVIDMLGRA 470

Query: 505 GCLSDASGLAGKLLEGMGPNIWRALLSGCVLH---------------------------- 536
           G L DA  +  K+     P +WRALL  C LH                            
Sbjct: 471 GHLEDAYEIVQKMPIQANPVVWRALLGACRLHGNAELAEIAARQVLQLEPEHCGSYVLMS 530

Query: 537 -----VGRFQDAEALRSGSQKKGIIKIPGISFL 564
                +GR+++   +R   +++ + K PG S++
Sbjct: 531 NVYGVIGRYEEVLEVRKTMKEQNVKKTPGCSWI 563



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 134/524 (25%), Positives = 256/524 (48%), Gaps = 53/524 (10%)

Query: 5   PYNSSKLLSNYFKSGKIKEAENLF-DEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           P + + L++ Y K G++ EA  +F D   E+NV +++ +I G+  NG   K  + +  M 
Sbjct: 46  PPSITSLINMYSKCGQMGEAILVFYDPCHERNVFAYNAIISGFVSNGLASKGFQFYKKMR 105

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPYL------ 115
           L G++P+ +T   V+     +  +   + IHG ++K GLE D+F G  L N YL      
Sbjct: 106 LEGVMPDKYTFPCVVRTCCEVMEV---KKIHGCLLKMGLELDVFVGSALVNTYLKNGSME 162

Query: 116 --------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                         V  NA++ G+       +A+ +F      G+ P+  T+  ++    
Sbjct: 163 DAQKVFGELSIRDVVLWNAMINGYAKIGCLDEALEVFRRMHVKGVAPSRFTITGILSVFA 222

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
           + G     + +HG+ +K+G    VSV+N+++DMY     +  A+ IF  +  KD+ SW  
Sbjct: 223 SRGDLDNGKTVHGIVMKMGYDSGVSVSNALIDMYGKCKHIGDALIIFEMINEKDIFSWNS 282

Query: 222 MMGLFVDFEYAGD---ALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           ++ +    E  GD    L++F +M  S I+ D V +  ++   + L  L  G+++H  ++
Sbjct: 283 IISV---HEQCGDHDGTLRLFDKMLGSGILPDLVTITTVLPACSHLAALMHGREIHGYMI 339

Query: 279 LGGLQSE--------LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
           + GL  +        L +SN+++ MY+KCG ++++  +F+ +++K + SW  +I GY  +
Sbjct: 340 INGLGKDDENGAVDNLLVSNAVMDMYAKCGSMNNALKIFDSMSKKDVASWNIMIMGYGMH 399

Query: 331 GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAF----EAGFPR 386
           G A EAL  F +M + +    + +TLV +L+A      +      HG  F    E+ F  
Sbjct: 400 GYALEALGMFSQMCEAEFKP-NEVTLVGVLSACNHAGFVS-----HGRLFLAQMESTFGV 453

Query: 387 YRSVQN--CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH 444
             ++++  C+I    + G+++ AY + ++M    + V W  ++    ++G+ E A     
Sbjct: 454 IPTIEHYTCVIDMLGRAGHLEDAYEIVQKMPIQANPVVWRALLGACRLHGNAELAEIAAR 513

Query: 445 KMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVK 488
           ++ +  E     +Y+ + N  G  G   + L +   M E+N  K
Sbjct: 514 QVLQL-EPEHCGSYVLMSNVYGVIGRYEEVLEVRKTMKEQNVKK 556



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 97/383 (25%), Positives = 189/383 (49%), Gaps = 35/383 (9%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  S L++ Y K+G +++A+ +F E+  ++VV W+ +I+GY+  G  +++++ F  M
Sbjct: 143 LDVFVGSALVNTYLKNGSMEDAQKVFGELSIRDVVLWNAMINGYAKIGCLDEALEVFRRM 202

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
            + G+ P+ FT+ G+L   A   +L+  +++HG+++K G +S                  
Sbjct: 203 HVKGVAPSRFTITGILSVFASRGDLDNGKTVHGIVMKMGYDSGVSVSNALIDMYGKCKHI 262

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +FE +    + S N+I++           + LF+   GSG++P+ VT+ TV+  C
Sbjct: 263 GDALIIFEMINEKDIFSWNSIISVHEQCGDHDGTLRLFDKMLGSGILPDLVTITTVLPAC 322

Query: 161 VALGSRALCELIHGLTIKLGL--------ILDVSVNNSVLDMYSCLMDLDAAIQIFREME 212
             L +      IHG  I  GL        + ++ V+N+V+DMY+    ++ A++IF  M 
Sbjct: 323 SHLAALMHGREIHGYMIINGLGKDDENGAVDNLLVSNAVMDMYAKCGSMNNALKIFDSMS 382

Query: 213 CKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQ 272
            KDV SW  M+  +    YA +AL +F +M ++    + V L+ ++S     G +  G+ 
Sbjct: 383 KKDVASWNIMIMGYGMHGYALEALGMFSQMCEAEFKPNEVTLVGVLSACNHAGFVSHGRL 442

Query: 273 LHAQV-VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISGYVQN 330
             AQ+    G+   +     +I M  + G L+ +  +  ++  + + V W A++     +
Sbjct: 443 FLAQMESTFGVIPTIEHYTCVIDMLGRAGHLEDAYEIVQKMPIQANPVVWRALLGACRLH 502

Query: 331 G---CAREALNQFIKMRQEKTDS 350
           G    A  A  Q +++  E   S
Sbjct: 503 GNAELAEIAARQVLQLEPEHCGS 525


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  244 bits (623), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 153/559 (27%), Positives = 279/559 (49%), Gaps = 44/559 (7%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + L+  Y K    K+  N+FDE+ E+NVV+W+ +I GY+ N  +E+ +  F  M   G  
Sbjct: 136 TSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQ 195

Query: 69  PNSFTMVGVL-------VAAAGLQNLELARSIHGLMVKFGLESD---------------- 105
           PNSFT    L       V   GLQ       +H ++VK GL+                  
Sbjct: 196 PNSFTFAAALGVLAEEGVGGRGLQ-------VHTVVVKNGLDKTIPVSNSLINLYLKCGN 248

Query: 106 ------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                 LF+  +   +V+ N++++G+  N L  +A+ +F   R + +  +  +  ++I+ 
Sbjct: 249 VRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNHVRLSESSFASIIKL 308

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME-CKDVIS 218
           C  L      E +H   +K G + D ++  +++  YS  M +  A+++F+E     +V+S
Sbjct: 309 CANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMAMLDALRLFKETGFLGNVVS 368

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           WT M+  F+  +   +A+ +F EM++  +  +      +++   ++       ++HAQVV
Sbjct: 369 WTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTALPVISP----SEVHAQVV 424

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
               +    +  +++  Y K G +D +  VF+ I  K +V+W+A+++GY Q G    A+ 
Sbjct: 425 KTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQAGETEAAIK 484

Query: 339 QFIKMRQEKTDSVDSITLVSILTA-SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
            F ++ +      +  T  SIL   +   A++    Q HG A ++       V + L++ 
Sbjct: 485 IFSELTKGGVKP-NEFTFSSILNVCAATTASMGQGKQFHGFAIKSRLDSSLCVSSALLTM 543

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           Y+K G+++ A  VF+     +D+VSWN++I GY  +G    AL ++ +M +     DS T
Sbjct: 544 YAKKGHIESAEEVFKRQR-EKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDSVT 602

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL 517
           ++ +  AC HAGL  +G   F+ M+ + K+ P++EH  C+VDL +RAG L  A  +   +
Sbjct: 603 FIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIDNM 662

Query: 518 LEGMGPNIWRALLSGCVLH 536
               G  IWR +L+ C +H
Sbjct: 663 PNLAGSTIWRTILAACRVH 681



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 131/509 (25%), Positives = 242/509 (47%), Gaps = 34/509 (6%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ L++ Y K G +++A  LFD+   K+VV+W+ +I GY+ NG   +++  F  M L+ +
Sbjct: 236 SNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNHV 295

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG--LESDLFEGLKNPY----------- 114
             +  +   ++   A L+ L     +H  +VK+G   + ++   L   Y           
Sbjct: 296 RLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMAMLDALR 355

Query: 115 ----------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
                     +VS  A+++GF+ N   ++AV LF+  +  G+ PN  T   ++     + 
Sbjct: 356 LFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTALPVIS 415

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
                  +H   +K       +V  ++LD Y  L  +D A ++F  ++ KD+++W+ M+ 
Sbjct: 416 PSE----VHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLA 471

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISV-NAILGDLKRGKQLHAQVVLGGLQ 283
            +        A+KIF E+ K  +  +     ++++V  A    + +GKQ H   +   L 
Sbjct: 472 GYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAATTASMGQGKQFHGFAIKSRLD 531

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
           S L +S++++ MY+K G ++S+  VF +  EK LVSW ++ISGY Q+G A +AL+ F +M
Sbjct: 532 SSLCVSSALLTMYAKKGHIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEM 591

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAF-EAGFPRYRSVQNCLISSYSKCG 402
           ++ K   +DS+T + +  A      +E   +   I   +      +   +C++  YS+ G
Sbjct: 592 KKRKV-KMDSVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAG 650

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSI 461
            ++ A  V + M  L     W TI+    V  H +T L           +P DS+ Y+ +
Sbjct: 651 QLEKAMKVIDNMPNLAGSTIWRTILAACRV--HKKTELGRLAAEKIIAMIPEDSAAYVLL 708

Query: 462 LNACGHAGLTNDGLVIFNQMIEEN-KVKP 489
            N    +G   +   +   M E N K +P
Sbjct: 709 SNMYAESGDWQERAKVRKLMNERNVKKEP 737



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 138/573 (24%), Positives = 276/573 (48%), Gaps = 38/573 (6%)

Query: 18  SGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGV 77
           S ++  A NLFD+ P+++  S++ ++ G+S +G  +++ + F ++   G+  +      V
Sbjct: 44  SSRLYYAHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFSSV 103

Query: 78  LVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFEGLKNPYL 115
           L  +A L +    R +H   +KFG   D                      +F+ +K   +
Sbjct: 104 LKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNV 163

Query: 116 VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA---LGSRALCELI 172
           V+   +++G+  N L ++ + LF   +  G  PN+ T    + G +A   +G R L   +
Sbjct: 164 VTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAAL-GVLAEEGVGGRGL--QV 220

Query: 173 HGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYA 232
           H + +K GL   + V+NS++++Y    ++  A  +F + E K V++W  M+  +      
Sbjct: 221 HTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLD 280

Query: 233 GDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSI 292
            +AL +F  MR + +     +  ++I + A L +L+  +QLH  VV  G   +  +  ++
Sbjct: 281 LEALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTAL 340

Query: 293 IAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
           +  YSKC  +  +  +F +     ++VSWTA+ISG++QN    EA+  F +M++ K    
Sbjct: 341 MVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKR-KGVRP 399

Query: 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVF 411
           +  T   ILTA   ++  E+    H    +  + R  +V   L+ +Y K G VD A  VF
Sbjct: 400 NEFTYSVILTALPVISPSEV----HAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVF 455

Query: 412 EEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLT 471
             +   +D+V+W+ ++ GY   G  E A+ ++ ++T+ G  P+  T+ SILN C     +
Sbjct: 456 SGIDN-KDIVAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAATTAS 514

Query: 472 NDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLS 531
                 F+    ++++  S      ++ + A+ G +  A  +  +  E    + W +++S
Sbjct: 515 MGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGHIESAEEVFKRQREKDLVS-WNSMIS 573

Query: 532 GCVLHVGRFQDAEALRSGSQKKGIIKIPGISFL 564
           G   H    +  +  +   ++K  +K+  ++F+
Sbjct: 574 GYAQHGQAMKALDVFKEMKKRK--VKMDSVTFI 604


>gi|212275047|ref|NP_001130303.1| uncharacterized protein LOC100191397 [Zea mays]
 gi|194688792|gb|ACF78480.1| unknown [Zea mays]
          Length = 706

 Score =  244 bits (623), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 165/626 (26%), Positives = 294/626 (46%), Gaps = 102/626 (16%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           LL  Y K G + +A  LFD +P  N VS++ ++ G +  G  + +++ F+ M  +G+  +
Sbjct: 82  LLGMYTKCGSVADAVRLFDGMPSPNEVSFTAMMGGLAQGGAVDDALRLFARMSRTGIRVD 141

Query: 71  SFTMVGVL----VAAAGLQN----LELARSIHGLMVKFGLESD----------------- 105
              +  VL     A AG  N    ++LA+SIH L+V+ G  SD                 
Sbjct: 142 PVAVSSVLGACAQACAGDYNVARAIQLAQSIHALVVRKGFGSDQHVGNSLVDLYAKGMKM 201

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +FE L +  +VS N ++ G+     +++A+ +  F + SG  PN VT   ++  C
Sbjct: 202 DEAIKVFESLSSVSIVSWNILITGYGQLGCYERAMEVLEFMQESGFEPNEVTYSNMLASC 261

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
           +                                      D+ +A  +F ++    V +W 
Sbjct: 262 IKA-----------------------------------RDVPSARAMFDKIPKPSVTTWN 286

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++  +   E   + + +FR M+   +  D   L  ++S  + LG+ + GKQ+H+  V  
Sbjct: 287 TLLSGYGQEELHQETIDLFRRMQHQNVQPDRTTLAVILSSCSRLGNFELGKQVHSASVRL 346

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
            L +++ +++ +I +YSKCG +  +  +FN +TE+ +V W ++ISG   +  + EA +  
Sbjct: 347 LLHNDMFVASGLIDIYSKCGQVGIALIIFNMMTERDVVCWNSMISGLAIHSLSEEAFDFL 406

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            +MR+      +S +  S++     L+++    Q+H    + G+ +   V   LI  Y+K
Sbjct: 407 KQMRENGMFPTES-SYASMINLCARLSSIPQGRQMHAQVLKDGYDQNVYVGCSLIDMYAK 465

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
            GN+D A + F  M  ++++V+WN +I+GY  NG GE A+ L+  M  T + PDS T+++
Sbjct: 466 SGNMDDARLFFNCM-IVKNLVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIA 524

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           +L  C H+GL ++ +  FN M     + P  EHY C++D LARA   ++   + GK+   
Sbjct: 525 VLTGCSHSGLVDEAVTFFNSMESNYGITPLVEHYTCLIDALARAARFAEVEAVIGKMPYK 584

Query: 521 MGPNIWRALLSGCVLH---------------------------------VGRFQDAEALR 547
             P +W  LL+ CV+H                                 +GR  DA A+R
Sbjct: 585 DDPILWEVLLAACVVHHNAELGEFSAKHLFRLDPKNPSPYVLLSNIYATLGRHGDASAVR 644

Query: 548 SGSQKKGIIKIPGISFLNST--SRDF 571
           +    +G++K  G S++N    SR F
Sbjct: 645 ALMSSRGVVKGRGYSWVNHKDGSRAF 670



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 110/436 (25%), Positives = 217/436 (49%), Gaps = 17/436 (3%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L+  Y K  K+ EA  +F+ +   ++VSW+I+I GY   G +E++M+    M 
Sbjct: 184 DQHVGNSLVDLYAKGMKMDEAIKVFESLSSVSIVSWNILITGYGQLGCYERAMEVLEFMQ 243

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVA 123
            SG  PN  T   +L +    +++  AR+             +F+ +  P + + N +++
Sbjct: 244 ESGFEPNEVTYSNMLASCIKARDVPSARA-------------MFDKIPKPSVTTWNTLLS 290

Query: 124 GFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLIL 183
           G+   +L Q+ + LF   +   + P+  T+  ++  C  LG+  L + +H  +++L L  
Sbjct: 291 GYGQEELHQETIDLFRRMQHQNVQPDRTTLAVILSSCSRLGNFELGKQVHSASVRLLLHN 350

Query: 184 DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMR 243
           D+ V + ++D+YS    +  A+ IF  M  +DV+ W  M+        + +A    ++MR
Sbjct: 351 DMFVASGLIDIYSKCGQVGIALIIFNMMTERDVVCWNSMISGLAIHSLSEEAFDFLKQMR 410

Query: 244 KSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLD 303
           ++ +     +  ++I++ A L  + +G+Q+HAQV+  G    + +  S+I MY+K G++D
Sbjct: 411 ENGMFPTESSYASMINLCARLSSIPQGRQMHAQVLKDGYDQNVYVGCSLIDMYAKSGNMD 470

Query: 304 SSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTAS 363
            +R  FN +  K+LV+W  +I GY QNG   +A+  F  M   K    DS+T +++LT  
Sbjct: 471 DARLFFNCMIVKNLVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKP-DSVTFIAVLTGC 529

Query: 364 GELAALEICLQLHGIAFEAGFPRYRSVQN--CLISSYSKCGNVDLAYIVFEEMGFLRDVV 421
                ++  +     + E+ +     V++  CLI + ++         V  +M +  D +
Sbjct: 530 SHSGLVDEAVTFFN-SMESNYGITPLVEHYTCLIDALARAARFAEVEAVIGKMPYKDDPI 588

Query: 422 SWNTIIYGYGVNGHGE 437
            W  ++    V+ + E
Sbjct: 589 LWEVLLAACVVHHNAE 604



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 162/362 (44%), Gaps = 45/362 (12%)

Query: 116 VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGL 175
           VS N ++A    +    +A+ ++      GL P   T+ +V+  C A+ +       HGL
Sbjct: 7   VSWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLASVLSACGAVAALDDGRRCHGL 66

Query: 176 TIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDA 235
            +K+GL     V N +L MY+    +  A+++F  M   + +S+T MMG         DA
Sbjct: 67  AVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGMPSPNEVSFTAMMGGLAQGGAVDDA 126

Query: 236 LKIFREMRKSRIICDTVALLNLIS--VNAILGD------LKRGKQLHAQVVLGGLQSELR 287
           L++F  M ++ I  D VA+ +++     A  GD      ++  + +HA VV  G  S+  
Sbjct: 127 LRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYNVARAIQLAQSIHALVVRKGFGSDQH 186

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
           + NS++ +Y+K   +D +  VF  ++  S+VSW  +I+GY Q GC   A+     M+   
Sbjct: 187 VGNSLVDLYAKGMKMDEAIKVFESLSSVSIVSWNILITGYGQLGCYERAMEVLEFMQ--- 243

Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
                                            E+GF       + +++S  K  +V  A
Sbjct: 244 ---------------------------------ESGFEPNEVTYSNMLASCIKARDVPSA 270

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
             +F+++     V +WNT++ GYG     +  + L+ +M      PD +T   IL++C  
Sbjct: 271 RAMFDKIP-KPSVTTWNTLLSGYGQEELHQETIDLFRRMQHQNVQPDRTTLAVILSSCSR 329

Query: 468 AG 469
            G
Sbjct: 330 LG 331



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 138/288 (47%), Gaps = 15/288 (5%)

Query: 211 MECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG 270
           M  ++ +SW  ++         G+AL++++ M +  +      L +++S    +  L  G
Sbjct: 1   MPDRNAVSWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLASVLSACGAVAALDDG 60

Query: 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
           ++ H   V  GL     + N ++ MY+KCG +  +  +F+ +   + VS+TA++ G  Q 
Sbjct: 61  RRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGMPSPNEVSFTAMMGGLAQG 120

Query: 331 GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELA--------ALEICLQLHGIAFEA 382
           G   +AL  F +M +     VD + + S+L A  +          A+++   +H +    
Sbjct: 121 GAVDDALRLFARMSRTGI-RVDPVAVSSVLGACAQACAGDYNVARAIQLAQSIHALVVRK 179

Query: 383 GFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALAL 442
           GF   + V N L+  Y+K   +D A  VFE +  +  +VSWN +I GYG  G  E A+ +
Sbjct: 180 GFGSDQHVGNSLVDLYAKGMKMDEAIKVFESLSSV-SIVSWNILITGYGQLGCYERAMEV 238

Query: 443 YHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPS 490
              M E+G  P+  TY ++L +C  A        +F+++      KPS
Sbjct: 239 LEFMQESGFEPNEVTYSNMLASCIKARDVPSARAMFDKI-----PKPS 281


>gi|357449183|ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355483916|gb|AES65119.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 874

 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 171/623 (27%), Positives = 307/623 (49%), Gaps = 68/623 (10%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + L++ Y K G I  A  +FDEI  ++ VSW+ +I+        E ++  F  M+L  + 
Sbjct: 124 NSLVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLMLLENVG 183

Query: 69  PNSFTMVGVLVAAAGLQN-LELARSIHGLMVKFG---------------------LESDL 106
           P SFT+V V  A + L N L L + +H  +++ G                         L
Sbjct: 184 PTSFTLVSVAHACSNLINGLLLGKQVHAFVLRNGDWRTFTNNALVTMYAKLGRVYEAKTL 243

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           F+   +  LVS N I++    N  F++A+L  +    SG+ PN VT+ +V+  C  L   
Sbjct: 244 FDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEML 303

Query: 167 ALCELIHGLTI-KLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
              + IH   +    LI +  V  +++DMY      +    +F  M  + +  W  M+  
Sbjct: 304 GCGKEIHAFVLMNNDLIENSFVGCALVDMYCNCKQPEKGRLVFDGMFRRTIAVWNAMIAG 363

Query: 226 FVDFEYAGDALKIFREMR-KSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
           +V  E+  +A+++F EM  +  +  ++V L +++            + +H+ VV  G + 
Sbjct: 364 YVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRCESFLDKEGIHSCVVKWGFEK 423

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           +  + N+++ MYS+ G ++ +RS+F  +  K +VSW  +I+GYV  G   +ALN    M+
Sbjct: 424 DKYVQNALMDMYSRMGRIEIARSIFGSMNRKDIVSWNTMITGYVVCGRHDDALNLLHDMQ 483

Query: 345 QEKTD-----------------SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRY 387
           + + +                   +S+TL+++L     LAAL    ++H  A +    + 
Sbjct: 484 RGQAEHRINTFDDYEDNKNFPLKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQMLSKD 543

Query: 388 RSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMT 447
            +V + L+  Y+KCG ++L+  VFE+M  +R+V++WN +I  YG++G GE AL L+ +M 
Sbjct: 544 VAVGSALVDMYAKCGCLNLSRTVFEQMS-VRNVITWNVLIMAYGMHGKGEEALKLFRRMV 602

Query: 448 ETGE-----VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLA 502
           E G+      P+  TY++I  +  H+G+ ++GL +F  M  ++ ++P+ +HY C+VDLL 
Sbjct: 603 EEGDNNREIRPNEVTYIAIFASLSHSGMVDEGLNLFYTMKAKHGIEPTSDHYACLVDLLG 662

Query: 503 RAGCLSDASGLAGKLLEGMGP-NIWRALLSGCVLH----VGRFQ-------DAEALRSGS 550
           R+G + +A  L   +   M   + W +LL  C +H    +G          D   L  G+
Sbjct: 663 RSGQIEEAYNLIKTMPSNMKKVDAWSSLLGACKIHQNLEIGEIAAKNLFVLDPNVLDYGT 722

Query: 551 QK---------KGIIKIPGISFL 564
           ++         KG+ K PG S++
Sbjct: 723 KQSMLGRKMKEKGVRKEPGCSWI 745



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 123/473 (26%), Positives = 234/473 (49%), Gaps = 54/473 (11%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           + ++ L++ Y K G++ EA+ LFD   +K++VSW+ +I   S N   E+++     M+ S
Sbjct: 222 FTNNALVTMYAKLGRVYEAKTLFDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQS 281

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL------------------- 106
           G+ PN  T+  VL A + L+ L   + IH  ++   + +DL                   
Sbjct: 282 GVRPNGVTLASVLPACSHLEMLGCGKEIHAFVL---MNNDLIENSFVGCALVDMYCNCKQ 338

Query: 107 -------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLF-NFFRGSGLVPNAVTMLTVIR 158
                  F+G+    +   NA++AG++ N+   +A+ LF       GL PN+VT+ +V+ 
Sbjct: 339 PEKGRLVFDGMFRRTIAVWNAMIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLP 398

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            CV   S    E IH   +K G   D  V N+++DMYS +  ++ A  IF  M  KD++S
Sbjct: 399 ACVRCESFLDKEGIHSCVVKWGFEKDKYVQNALMDMYSRMGRIEIARSIFGSMNRKDIVS 458

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSR------------------IICDTVALLNLISV 260
           W  M+  +V      DAL +  +M++ +                  +  ++V L+ ++  
Sbjct: 459 WNTMITGYVVCGRHDDALNLLHDMQRGQAEHRINTFDDYEDNKNFPLKPNSVTLMTVLPG 518

Query: 261 NAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSW 320
            A L  L +GK++HA  V   L  ++ + ++++ MY+KCG L+ SR+VF Q++ +++++W
Sbjct: 519 CAALAALGKGKEIHAYAVKQMLSKDVAVGSALVDMYAKCGCLNLSRTVFEQMSVRNVITW 578

Query: 321 TAIISGYVQNGCAREALNQFIKMRQEKTDS----VDSITLVSILTASGELAALEICLQL- 375
             +I  Y  +G   EAL  F +M +E  ++     + +T ++I  +      ++  L L 
Sbjct: 579 NVLIMAYGMHGKGEEALKLFRRMVEEGDNNREIRPNEVTYIAIFASLSHSGMVDEGLNLF 638

Query: 376 HGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFLRDVVSWNTII 427
           + +  + G         CL+    + G ++ AY + + M   ++ V +W++++
Sbjct: 639 YTMKAKHGIEPTSDHYACLVDLLGRSGQIEEAYNLIKTMPSNMKKVDAWSSLL 691



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 132/509 (25%), Positives = 239/509 (46%), Gaps = 56/509 (11%)

Query: 47  SINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG----- 101
           S + FH+ ++  +++M+ +G+ P++F    VL A AG+Q+L L + +H  + KFG     
Sbjct: 62  SSSTFHQ-AISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQALPT 120

Query: 102 -----------------LESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGS 144
                                +F+ + N   VS N+++      + ++ AV LF      
Sbjct: 121 AVPNSLVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLMLLE 180

Query: 145 GLVPNAVTMLTVIRGCVAL-GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDA 203
            + P + T+++V   C  L     L + +H   ++ G     + NN+++ MY+ L  +  
Sbjct: 181 NVGPTSFTLVSVAHACSNLINGLLLGKQVHAFVLRNGDWRTFT-NNALVTMYAKLGRVYE 239

Query: 204 AIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAI 263
           A  +F   + KD++SW  ++      +   +AL     M +S +  + V L +++   + 
Sbjct: 240 AKTLFDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPACSH 299

Query: 264 LGDLKRGKQLHAQVVLGG-LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTA 322
           L  L  GK++HA V++   L     +  +++ MY  C   +  R VF+ +  +++  W A
Sbjct: 300 LEMLGCGKEIHAFVLMNNDLIENSFVGCALVDMYCNCKQPEKGRLVFDGMFRRTIAVWNA 359

Query: 323 IISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEA 382
           +I+GYV+N    EA+  F++M  E   S +S+TL S+L A     +      +H    + 
Sbjct: 360 MIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRCESFLDKEGIHSCVVKW 419

Query: 383 GFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALAL 442
           GF + + VQN L+  YS+ G +++A  +F  M   +D+VSWNT+I GY V G  + AL L
Sbjct: 420 GFEKDKYVQNALMDMYSRMGRIEIARSIFGSMN-RKDIVSWNTMITGYVVCGRHDDALNL 478

Query: 443 YHKMTETGEV-------------------PDSSTYLSILNACGHAGLTNDGLVIF----N 479
            H M + G+                    P+S T +++L  C        G  I      
Sbjct: 479 LHDM-QRGQAEHRINTFDDYEDNKNFPLKPNSVTLMTVLPGCAALAALGKGKEIHAYAVK 537

Query: 480 QMIEENKVKPSQEHYGCVVDLLARAGCLS 508
           QM+ ++    S      +VD+ A+ GCL+
Sbjct: 538 QMLSKDVAVGS-----ALVDMYAKCGCLN 561



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 116/429 (27%), Positives = 197/429 (45%), Gaps = 17/429 (3%)

Query: 131 FQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNS 190
           F QA+  +     +G+ P+      V++    +    L + +H    K G  L  +V NS
Sbjct: 66  FHQAISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQALPTAVPNS 125

Query: 191 VLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICD 250
           +++MY    D+DAA ++F E+  +D +SW  M+     FE    A+ +FR M    +   
Sbjct: 126 LVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLMLLENVGPT 185

Query: 251 TVALLNLI-SVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVF 309
           +  L+++  + + ++  L  GKQ+HA V+  G       +N+++ MY+K G +  ++++F
Sbjct: 186 SFTLVSVAHACSNLINGLLLGKQVHAFVLRNGDWRTF-TNNALVTMYAKLGRVYEAKTLF 244

Query: 310 NQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAAL 369
           +   +K LVSW  IIS   QN    EAL     M Q      + +TL S+L A   L  L
Sbjct: 245 DVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRP-NGVTLASVLPACSHLEML 303

Query: 370 EICLQLHGIAFEAGFPRYRSVQNC-LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIY 428
               ++H            S   C L+  Y  C   +   +VF+ M F R +  WN +I 
Sbjct: 304 GCGKEIHAFVLMNNDLIENSFVGCALVDMYCNCKQPEKGRLVFDGM-FRRTIAVWNAMIA 362

Query: 429 GYGVNGHGETALALYHKMT-ETGEVPDSSTYLSILNAC--GHAGLTNDGL--VIFNQMIE 483
           GY  N     A+ L+ +M  E G  P+S T  S+L AC    + L  +G+   +     E
Sbjct: 363 GYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRCESFLDKEGIHSCVVKWGFE 422

Query: 484 ENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDA 543
           ++K   +      ++D+ +R G +  A  + G  +       W  +++G V+  GR  DA
Sbjct: 423 KDKYVQN-----ALMDMYSRMGRIEIARSIFGS-MNRKDIVSWNTMITGYVV-CGRHDDA 475

Query: 544 EALRSGSQK 552
             L    Q+
Sbjct: 476 LNLLHDMQR 484



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/280 (22%), Positives = 112/280 (40%), Gaps = 70/280 (25%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + L+  Y + G+I+ A ++F  +  K++VSW+ +I GY + G H+ ++    H M
Sbjct: 424 DKYVQNALMDMYSRMGRIEIARSIFGSMNRKDIVSWNTMITGYVVCGRHDDALNLL-HDM 482

Query: 64  LSG-------------------LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES 104
             G                   L PNS T++ VL   A L  L   + IH   VK  L  
Sbjct: 483 QRGQAEHRINTFDDYEDNKNFPLKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQMLSK 542

Query: 105 D----------------------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFR 142
           D                      +FE +    +++ N ++  +  +   ++A+ LF    
Sbjct: 543 DVAVGSALVDMYAKCGCLNLSRTVFEQMSVRNVITWNVLIMAYGMHGKGEEALKLFRRMV 602

Query: 143 GSG-----LVPNAVTMLTVIRGCVALGSRALCE----LIHGLTIKLGLILDVSVNNSVLD 193
             G     + PN VT + +     +L    + +    L + +  K G+           D
Sbjct: 603 EEGDNNREIRPNEVTYIAIF---ASLSHSGMVDEGLNLFYTMKAKHGI-------EPTSD 652

Query: 194 MYSCLMDL-------DAAIQIFREMEC--KDVISWTRMMG 224
            Y+CL+DL       + A  + + M    K V +W+ ++G
Sbjct: 653 HYACLVDLLGRSGQIEEAYNLIKTMPSNMKKVDAWSSLLG 692


>gi|296087156|emb|CBI33530.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 155/446 (34%), Positives = 239/446 (53%), Gaps = 7/446 (1%)

Query: 96  LMVKFGL---ESDLFEGLKNPYLVSCNAIVAGFI-NNKLFQQAVLLFNFFRGSGLVPNAV 151
           L +KFG       LF+ +    +VS N +++  + NN      V L++  +   + PN +
Sbjct: 103 LYLKFGHIHHAHQLFDTMPRRDVVSFNTMISASVRNNYDALDLVGLYSKMKKEDVKPNHI 162

Query: 152 TMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM 211
           T   +I  C  L +  L  + H  T++ GL  +  V +S++D Y+  M L+ AI+ F E+
Sbjct: 163 TFAGLIGACDGLIALRLRGIFHAHTVRCGLSSNEFVGSSLVDGYAKQMKLEDAIKAFNEI 222

Query: 212 ECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGK 271
              D++SW  M+           A+++F +M K  +  D   L ++I   +  GDLK G 
Sbjct: 223 MELDLVSWNIMIDGCARNNSKEHAVRMFSQMLKGNVRVDGFTLTSIIKTCSKPGDLKHGM 282

Query: 272 QLHAQVVLGGLQSELRLSNSIIAMYSKCGD-LDSSRSVFNQITEKSLVSWTAIISGYVQN 330
           Q H   +  GL  E  + N++I MYSKC   + S   +F  I+E +++SWTA+ISG++QN
Sbjct: 283 QFHGSAIKLGLAHETPIYNALITMYSKCEKGVASPVKIFGSISEPNIISWTAMISGFMQN 342

Query: 331 GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV 390
               EA+  F +M +      D  +  SIL   G LA LE   Q+H    ++ F    SV
Sbjct: 343 EQNEEAIGLFKEMLRLGVREND-FSFSSILPVYGNLANLEQGKQIHARIIKSWFGLDLSV 401

Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
            N LI  YSKCG+++ A++VF +MG   DVVS  T+I  YG +G G+ AL +  +M   G
Sbjct: 402 NNALIDMYSKCGSLEDAHLVFMKMG-KHDVVSCTTMIMSYGQHGKGKEALEILAEMKSEG 460

Query: 451 EVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
            VPD  T+L  L AC H GL  +G+ +F  MIE++ +KP +EH+ CVVD+L RAG L++A
Sbjct: 461 LVPDGVTFLGCLYACSHGGLVEEGVRVFKIMIEDHNLKPKREHFACVVDMLGRAGRLNEA 520

Query: 511 SGLAGKLLEGMGPNIWRALLSGCVLH 536
                ++       +W  LL  C +H
Sbjct: 521 ENFIDEMGIESDVLVWETLLGACRVH 546



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 131/458 (28%), Positives = 221/458 (48%), Gaps = 28/458 (6%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKA-FSHMMLSGL 67
           +KLLS Y K G I  A  LFD +P ++VVS++ +I     N +    +   +S M    +
Sbjct: 98  NKLLSLYLKFGHIHHAHQLFDTMPRRDVVSFNTMISASVRNNYDALDLVGLYSKMKKEDV 157

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPY----------- 114
            PN  T  G++ A  GL  L L    H   V+ GL S+ F G  L + Y           
Sbjct: 158 KPNHITFAGLIGACDGLIALRLRGIFHAHTVRCGLSSNEFVGSSLVDGYAKQMKLEDAIK 217

Query: 115 ---------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
                    LVS N ++ G   N   + AV +F+      +  +  T+ ++I+ C   G 
Sbjct: 218 AFNEIMELDLVSWNIMIDGCARNNSKEHAVRMFSQMLKGNVRVDGFTLTSIIKTCSKPGD 277

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYS-CLMDLDAAIQIFREMECKDVISWTRMMG 224
                  HG  IKLGL  +  + N+++ MYS C   + + ++IF  +   ++ISWT M+ 
Sbjct: 278 LKHGMQFHGSAIKLGLAHETPIYNALITMYSKCEKGVASPVKIFGSISEPNIISWTAMIS 337

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            F+  E   +A+ +F+EM +  +  +  +  +++ V   L +L++GKQ+HA+++      
Sbjct: 338 GFMQNEQNEEAIGLFKEMLRLGVRENDFSFSSILPVYGNLANLEQGKQIHARIIKSWFGL 397

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           +L ++N++I MYSKCG L+ +  VF ++ +  +VS T +I  Y Q+G  +EAL    +M+
Sbjct: 398 DLSVNNALIDMYSKCGSLEDAHLVFMKMGKHDVVSCTTMIMSYGQHGKGKEALEILAEMK 457

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFE-AGFPRYRSVQNCLISSYSKCGN 403
            E     D +T +  L A      +E  +++  I  E       R    C++    + G 
Sbjct: 458 SEGL-VPDGVTFLGCLYACSHGGLVEEGVRVFKIMIEDHNLKPKREHFACVVDMLGRAGR 516

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALA 441
           ++ A    +EMG   DV+ W T++    V  HGE  L 
Sbjct: 517 LNEAENFIDEMGIESDVLVWETLLGACRV--HGEMVLG 552



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 161/357 (45%), Gaps = 5/357 (1%)

Query: 156 VIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKD 215
           +++ C   G       +H   +KL +   + + N +L +Y     +  A Q+F  M  +D
Sbjct: 65  ILQECTDAGDLRTGMSVHTYLVKLNINGFILIWNKLLSLYLKFGHIHHAHQLFDTMPRRD 124

Query: 216 VISWTRMMGLFVDFEY-AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
           V+S+  M+   V   Y A D + ++ +M+K  +  + +    LI     L  L+     H
Sbjct: 125 VVSFNTMISASVRNNYDALDLVGLYSKMKKEDVKPNHITFAGLIGACDGLIALRLRGIFH 184

Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
           A  V  GL S   + +S++  Y+K   L+ +   FN+I E  LVSW  +I G  +N    
Sbjct: 185 AHTVRCGLSSNEFVGSSLVDGYAKQMKLEDAIKAFNEIMELDLVSWNIMIDGCARNNSKE 244

Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
            A+  F +M +     VD  TL SI+    +   L+  +Q HG A + G      + N L
Sbjct: 245 HAVRMFSQMLKGNV-RVDGFTLTSIIKTCSKPGDLKHGMQFHGSAIKLGLAHETPIYNAL 303

Query: 395 ISSYSKCGN-VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           I+ YSKC   V     +F  +    +++SW  +I G+  N   E A+ L+ +M   G   
Sbjct: 304 ITMYSKCEKGVASPVKIFGSIS-EPNIISWTAMISGFMQNEQNEEAIGLFKEMLRLGVRE 362

Query: 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
           +  ++ SIL   G+      G  I  ++I ++           ++D+ ++ G L DA
Sbjct: 363 NDFSFSSILPVYGNLANLEQGKQIHARII-KSWFGLDLSVNNALIDMYSKCGSLEDA 418



 Score = 38.5 bits (88), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 46/80 (57%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D   ++ L+  Y K G +++A  +F ++ + +VVS + +I  Y  +G  +++++  + M
Sbjct: 397 LDLSVNNALIDMYSKCGSLEDAHLVFMKMGKHDVVSCTTMIMSYGQHGKGKEALEILAEM 456

Query: 63  MLSGLLPNSFTMVGVLVAAA 82
              GL+P+  T +G L A +
Sbjct: 457 KSEGLVPDGVTFLGCLYACS 476


>gi|15232006|ref|NP_187516.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207468|sp|Q9SS83.1|PP220_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g09040, mitochondrial; Flags: Precursor
 gi|5923669|gb|AAD56320.1|AC009326_7 hypothetical protein [Arabidopsis thaliana]
 gi|332641192|gb|AEE74713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1028

 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 171/623 (27%), Positives = 290/623 (46%), Gaps = 63/623 (10%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y  S L+S Y K  K++ A  +F+ + EKN V W+ +I GY+ NG   K M+ F  M  S
Sbjct: 363 YVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSS 422

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPYL-------- 115
           G   + FT   +L   A   +LE+    H +++K  L  +LF G  L + Y         
Sbjct: 423 GYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDA 482

Query: 116 ------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
                       V+ N I+  ++ ++   +A  LF      G+V +   + + ++ C  +
Sbjct: 483 RQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHV 542

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
                 + +H L++K GL  D+   +S++DMYS    +  A ++F  +    V+S   ++
Sbjct: 543 HGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALI 602

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
             +       +A+ +F+EM    +    +    ++        L  G Q H Q+   G  
Sbjct: 603 AGYSQNNLE-EAVVLFQEMLTRGVNPSEITFATIVEACHKPESLTLGTQFHGQITKRGFS 661

Query: 284 SELR-LSNSIIAMYSKCGDLDSSRSVFNQITE-KSLVSWTAIISGYVQNGCAREALNQFI 341
           SE   L  S++ MY     +  + ++F++++  KS+V WT ++SG+ QNG   EAL  + 
Sbjct: 662 SEGEYLGISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYK 721

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +MR +     D  T V++L     L++L     +H + F           N LI  Y+KC
Sbjct: 722 EMRHDGV-LPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKC 780

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G++  +  VF+EM    +VVSWN++I GY  NG+ E AL ++  M ++  +PD  T+L +
Sbjct: 781 GDMKGSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGV 840

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L AC HAG  +DG  IF  MI +  ++   +H  C+VDLL R G L +A        + +
Sbjct: 841 LTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEA--QNL 898

Query: 522 GPN--IWRALLSGCVLH---------------------------------VGRFQDAEAL 546
            P+  +W +LL  C +H                                  G ++ A AL
Sbjct: 899 KPDARLWSSLLGACRIHGDDIRGEISAEKLIELEPQNSSAYVLLSNIYASQGCWEKANAL 958

Query: 547 RSGSQKKGIIKIPGISFLNSTSR 569
           R   + +G+ K+PG S+++   R
Sbjct: 959 RKVMRDRGVKKVPGYSWIDVEQR 981



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 146/547 (26%), Positives = 260/547 (47%), Gaps = 30/547 (5%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           +++ Y + GK+K+A  LF E+   +VV+W+++I G+   G    +++ F +M  S +   
Sbjct: 267 VINTYIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKST 326

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------------FE 108
             T+  VL A   + NL+L   +H   +K GL S++                      FE
Sbjct: 327 RSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFE 386

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            L+    V  NA++ G+ +N    + + LF   + SG   +  T  +++  C A     +
Sbjct: 387 ALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEM 446

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
               H + IK  L  ++ V N+++DMY+    L+ A QIF  M  +D ++W  ++G +V 
Sbjct: 447 GSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQ 506

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
            E   +A  +F+ M    I+ D   L + +     +  L +GKQ+H   V  GL  +L  
Sbjct: 507 DENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVKCGLDRDLHT 566

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
            +S+I MYSKCG +  +R VF+ + E S+VS  A+I+GY QN    EA+  F +M     
Sbjct: 567 GSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGYSQNNL-EEAVVLFQEMLTRGV 625

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFP---RYRSVQNCLISSYSKCGNVD 405
           +  + IT  +I+ A  +  +L +  Q HG   + GF     Y  +   L+  Y     + 
Sbjct: 626 NPSE-ITFATIVEACHKPESLTLGTQFHGQITKRGFSSEGEYLGIS--LLGMYMNSRGMT 682

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            A  +F E+   + +V W  ++ G+  NG  E AL  Y +M   G +PD +T++++L  C
Sbjct: 683 EACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVC 742

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI 525
                  +G  I + +I        +     ++D+ A+ G +  +S +  ++        
Sbjct: 743 SVLSSLREGRAI-HSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSNVVS 801

Query: 526 WRALLSG 532
           W +L++G
Sbjct: 802 WNSLING 808



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 135/475 (28%), Positives = 217/475 (45%), Gaps = 60/475 (12%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTM 74
           Y K  ++  AE  FD + EK+V +W+ ++  YS  G   K +++F  +  + + PN FT 
Sbjct: 105 YAKCAQVSYAEKQFDFL-EKDVTAWNSMLSMYSSIGKPGKVLRSFVSLFENQIFPNKFTF 163

Query: 75  VGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFEGLKN 112
             VL   A   N+E  R IH  M+K GLE +                      +FE + +
Sbjct: 164 SIVLSTCARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRISDARRVFEWIVD 223

Query: 113 PYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELI 172
           P  V    + +G++   L ++AVL+F   R  G  P+ +  +TVI   + LG        
Sbjct: 224 PNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRPDHLAFVTVINTYIRLGK------- 276

Query: 173 HGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYA 232
                                       L  A  +F EM   DV++W  M+         
Sbjct: 277 ----------------------------LKDARLLFGEMSSPDVVAWNVMISGHGKRGCE 308

Query: 233 GDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSI 292
             A++ F  MRKS +      L +++S   I+ +L  G  +HA+ +  GL S + + +S+
Sbjct: 309 TVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSL 368

Query: 293 IAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVD 352
           ++MYSKC  ++++  VF  + EK+ V W A+I GY  NG + + +  F+ M+    + +D
Sbjct: 369 VSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYN-ID 427

Query: 353 SITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFE 412
             T  S+L+       LE+  Q H I  +    +   V N L+  Y+KCG ++ A  +FE
Sbjct: 428 DFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFE 487

Query: 413 EMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
            M   RD V+WNTII  Y  + +   A  L+ +M   G V D +   S L AC H
Sbjct: 488 RM-CDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTH 541



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 140/530 (26%), Positives = 243/530 (45%), Gaps = 18/530 (3%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           + Y    L+  Y K  +I +A  +F+ I + N V W+ +  GY   G  E+++  F  M 
Sbjct: 194 NSYCGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMR 253

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVA 123
             G  P+    V V+     L  L+ AR + G M              +P +V+ N +++
Sbjct: 254 DEGHRPDHLAFVTVINTYIRLGKLKDARLLFGEM-------------SSPDVVAWNVMIS 300

Query: 124 GFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLIL 183
           G         A+  F   R S +     T+ +V+     + +  L  ++H   IKLGL  
Sbjct: 301 GHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLAS 360

Query: 184 DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMR 243
           ++ V +S++ MYS    ++AA ++F  +E K+ + W  M+  +     +   +++F +M+
Sbjct: 361 NIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMK 420

Query: 244 KSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLD 303
            S    D     +L+S  A   DL+ G Q H+ ++   L   L + N+++ MY+KCG L+
Sbjct: 421 SSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALE 480

Query: 304 SSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTAS 363
            +R +F ++ ++  V+W  II  YVQ+    EA + F +M      S D   L S L A 
Sbjct: 481 DARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVS-DGACLASTLKAC 539

Query: 364 GELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSW 423
             +  L    Q+H ++ + G  R     + LI  YSKCG +  A  VF  +     VVS 
Sbjct: 540 THVHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEW-SVVSM 598

Query: 424 NTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIE 483
           N +I GY  N + E A+ L+ +M   G  P   T+ +I+ AC        G   F+  I 
Sbjct: 599 NALIAGYSQN-NLEEAVVLFQEMLTRGVNPSEITFATIVEACHKPESLTLG-TQFHGQIT 656

Query: 484 ENKVKPSQEHYG-CVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSG 532
           +       E+ G  ++ +   +  +++A  L  +L       +W  ++SG
Sbjct: 657 KRGFSSEGEYLGISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSG 706



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 89/312 (28%), Positives = 155/312 (49%), Gaps = 27/312 (8%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  S L+  Y K G IK+A  +F  +PE +VVS + +I GYS N   E+++  F  M+
Sbjct: 563 DLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGYSQNNL-EEAVVLFQEML 621

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
             G+ P+  T   ++ A    ++L L    HG + K G  S+                  
Sbjct: 622 TRGVNPSEITFATIVEACHKPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGM 681

Query: 106 -----LFEGLKNPY-LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                LF  L +P  +V    +++G   N  +++A+  +   R  G++P+  T +TV+R 
Sbjct: 682 TEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRV 741

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK-DVIS 218
           C  L S      IH L   L   LD   +N+++DMY+   D+  + Q+F EM  + +V+S
Sbjct: 742 CSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSNVVS 801

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           W  ++  +    YA DALKIF  MR+S I+ D +  L +++  +  G +  G+++  +++
Sbjct: 802 WNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKIF-EMM 860

Query: 279 LGGLQSELRLSN 290
           +G    E R+ +
Sbjct: 861 IGQYGIEARVDH 872



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 93/403 (23%), Positives = 173/403 (42%), Gaps = 66/403 (16%)

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           +H  ++ LG+  +  + N+++D+Y+    +  A + F  +E KDV +W  M+ ++     
Sbjct: 82  VHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFDFLE-KDVTAWNSMLSMYSSIGK 140

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
            G  L+ F  + +++I  +      ++S  A   +++ G+Q+H  ++  GL+       +
Sbjct: 141 PGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLERNSYCGGA 200

Query: 292 IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE--KTD 349
           ++ MY+KC  +  +R VF  I + + V WT + SGYV+ G   EA+  F +MR E  + D
Sbjct: 201 LVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRPD 260

Query: 350 SVDSITLVSILTASGEL---------------AALEICLQLHG------IAFEAGF---- 384
            +  +T+++     G+L                A  + +  HG      +A E  F    
Sbjct: 261 HLAFVTVINTYIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRK 320

Query: 385 ---PRYRSVQNCLISSYSKCGNVDLAYIVFEE---MGFLRDV------------------ 420
                 RS    ++S+     N+DL  +V  E   +G   ++                  
Sbjct: 321 SSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEA 380

Query: 421 -------------VSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
                        V WN +I GY  NG     + L+  M  +G   D  T+ S+L+ C  
Sbjct: 381 AAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAA 440

Query: 468 AGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
           +     G   F+ +I + K+  +      +VD+ A+ G L DA
Sbjct: 441 SHDLEMG-SQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDA 482



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 103/215 (47%), Gaps = 3/215 (1%)

Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISG 326
           L+ GK +H++ ++ G+ SE RL N+I+ +Y+KC  +  +   F+   EK + +W +++S 
Sbjct: 76  LRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFD-FLEKDVTAWNSMLSM 134

Query: 327 YVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPR 386
           Y   G   + L  F+ + + +    +  T   +L+       +E   Q+H    + G  R
Sbjct: 135 YSSIGKPGKVLRSFVSLFENQIFP-NKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLER 193

Query: 387 YRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM 446
                  L+  Y+KC  +  A  VFE +    + V W  +  GY   G  E A+ ++ +M
Sbjct: 194 NSYCGGALVDMYAKCDRISDARRVFEWI-VDPNTVCWTCLFSGYVKAGLPEEAVLVFERM 252

Query: 447 TETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQM 481
            + G  PD   +++++N     G   D  ++F +M
Sbjct: 253 RDEGHRPDHLAFVTVINTYIRLGKLKDARLLFGEM 287



 Score = 46.6 bits (109), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 74/172 (43%), Gaps = 14/172 (8%)

Query: 368 ALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFL-RDVVSWNTI 426
           AL I   +H  +   G      + N ++  Y+KC  V  A   F+   FL +DV +WN++
Sbjct: 75  ALRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFD---FLEKDVTAWNSM 131

Query: 427 IYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENK 486
           +  Y   G     L  +  + E    P+  T+  +L+ C        G  I   MI   K
Sbjct: 132 LSMYSSIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQIHCSMI---K 188

Query: 487 VKPSQEHY--GCVVDLLARAGCLSDASGLAGKLLEGMGPNI--WRALLSGCV 534
           +   +  Y  G +VD+ A+   +SDA  +   +++   PN   W  L SG V
Sbjct: 189 MGLERNSYCGGALVDMYAKCDRISDARRVFEWIVD---PNTVCWTCLFSGYV 237


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 153/551 (27%), Positives = 284/551 (51%), Gaps = 33/551 (5%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTM 74
           Y K G + +A  +F  I   N VSW++++  ++ NG + +++  +  M+L GL P+    
Sbjct: 2   YGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMF 61

Query: 75  VGVLVAAAGLQNLELARSIHGLMVKFGL-ESDL----------------------FEGLK 111
           V  +   +  ++L+  + +H ++++  L E D+                      F+ + 
Sbjct: 62  VVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMG 121

Query: 112 NPYLVSCNAIVAGFINNKLFQQAVLLFNFF---RGSGLVPNAVTMLTVIRGCVALGSRAL 168
              LV+ NA++AG+  N   + A+ ++         G+ P+A+T  + +  C  +G  + 
Sbjct: 122 KKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQ 181

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
              I   T+  G   D  V N++++MYS    L++A ++F  ++ +DVI+W  M+  +  
Sbjct: 182 GREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAK 241

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
              A  AL++F+ M  +    + V  + L++    L DL++G+ +H +V   G +S+L +
Sbjct: 242 QGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVI 301

Query: 289 SNSIIAMYSKCGD-LDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
            N ++ MY+KC   L+ +R VF ++  + +++W  +I  YVQ G A++AL+ F +M+ E 
Sbjct: 302 GNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLEN 361

Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
             + + ITL ++L+A   L A      +H +           ++N L++ Y++CG++D  
Sbjct: 362 V-APNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDT 420

Query: 408 YIVFEEMGFLRD--VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
             VF     +RD  +VSW+T+I  Y  +GH  T L  + ++ + G   D  T +S L+AC
Sbjct: 421 VGVF---AAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSAC 477

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI 525
            H G+  +G+  F  M+ ++ + P   H+ C+VDLL+RAG L  A  L   +        
Sbjct: 478 SHGGMLKEGVQSFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVA 537

Query: 526 WRALLSGCVLH 536
           W +LLSGC LH
Sbjct: 538 WTSLLSGCKLH 548



 Score =  222 bits (566), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 142/498 (28%), Positives = 250/498 (50%), Gaps = 40/498 (8%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM---LS 65
           + L++ Y +   ++ A   FDE+ +K +V+W+ +I GYS NG H  ++K +  M+     
Sbjct: 98  TALITMYARCRDLELARKTFDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPE 157

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-------------------- 105
           G+ P++ T    L A + + ++   R I    V  G  SD                    
Sbjct: 158 GMKPDAITFSSALYACSVVGDISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESA 217

Query: 106 --LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
             +F+ LKN  +++ N +++G+       QA+ LF     +   PN VT + ++  C  L
Sbjct: 218 RKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNL 277

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYS-CLMDLDAAIQIFREMECKDVISWTRM 222
                   IH    + G   D+ + N +L+MY+ C   L+ A Q+F  +  +DVI+W  +
Sbjct: 278 EDLEQGRAIHRKVKEHGYESDLVIGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNIL 337

Query: 223 MGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL 282
           +  +V +  A DAL IF++M+   +  + + L N++S  A+LG  ++GK +HA +  G  
Sbjct: 338 IVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRC 397

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
           ++++ L NS++ MY++CG LD +  VF  I +KSLVSW+ +I+ Y Q+G +R  L  F +
Sbjct: 398 KADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWE 457

Query: 343 MRQEKTDSVDSITLVSILTASGELAALEICLQL-------HGIAFEAGFPRYRSVQNCLI 395
           + QE   + D +T+VS L+A      L+  +Q        HG+A     P YR    C++
Sbjct: 458 LLQEGL-AADDVTMVSTLSACSHGGMLKEGVQSFLSMVGDHGLA-----PDYRHFL-CMV 510

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
              S+ G ++ A  +  +M FL D V+W +++ G  ++   + A  +  K+ E     + 
Sbjct: 511 DLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELESEDEH 570

Query: 456 STYLSILNACGHAGLTND 473
           ST   + N    AG  +D
Sbjct: 571 STVTLLSNVYAEAGRWDD 588



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/293 (30%), Positives = 154/293 (52%), Gaps = 4/293 (1%)

Query: 194 MYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVA 253
           MY     +  A+ +F  +E  + +SWT ++  F    +  +AL  +R M    +  D   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 254 LLNLISVNAILGDLKRGKQLHAQVVLGG-LQSELRLSNSIIAMYSKCGDLDSSRSVFNQI 312
            +  I V +   DLK+G+ LHA ++    L+ ++ L  ++I MY++C DL+ +R  F+++
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 313 TEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV--DSITLVSILTASGELAALE 370
            +K+LV+W A+I+GY +NG  R AL  +  M  +  + +  D+IT  S L A   +  + 
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDIS 180

Query: 371 ICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGY 430
              ++      +G+     VQN LI+ YSKCG+++ A  VF+ +   RDV++WNT+I GY
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKN-RDVIAWNTMISGY 239

Query: 431 GVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIE 483
              G    AL L+ +M      P+  T++ +L AC +      G  I  ++ E
Sbjct: 240 AKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKE 292



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 120/244 (49%), Gaps = 12/244 (4%)

Query: 295 MYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE--KTDSVD 352
           MY KCG +  + +VF+ I   + VSWT I++ + +NG  REAL  + +M  E  + D   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 353 SITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV-QNCLISSYSKCGNVDLAYIVF 411
            +  + + ++S +L   ++   LH +  E     +  +    LI+ Y++C +++LA   F
Sbjct: 61  FVVAIGVCSSSKDLKQGQL---LHAMILETQLLEFDIILGTALITMYARCRDLELARKTF 117

Query: 412 EEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM---TETGEVPDSSTYLSILNACGHA 468
           +EMG  + +V+WN +I GY  NG    AL +Y  M   +  G  PD+ T+ S L AC   
Sbjct: 118 DEMG-KKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVV 176

Query: 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRA 528
           G  + G  I  + +       S      ++++ ++ G L  A  +  + L+      W  
Sbjct: 177 GDISQGREIEARTVASGYASDSIVQ-NALINMYSKCGSLESARKVFDR-LKNRDVIAWNT 234

Query: 529 LLSG 532
           ++SG
Sbjct: 235 MISG 238


>gi|297802780|ref|XP_002869274.1| hypothetical protein ARALYDRAFT_491483 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315110|gb|EFH45533.1| hypothetical protein ARALYDRAFT_491483 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 686

 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 163/552 (29%), Positives = 273/552 (49%), Gaps = 32/552 (5%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ ++  Y K+G+   A  +F+ + + +VVSW+ ++ G+  N   + ++     M  +G+
Sbjct: 39  SNAVMGMYRKAGRFDNALYIFENLVDPDVVSWNTILSGFDDN---QIALNFVVRMKSAGV 95

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------FEGLKN 112
           + ++FT    L    G +   L   +   +VK GLESDL               F G + 
Sbjct: 96  VFDAFTYSTALSFCVGSEGFRLGLQLQSTVVKSGLESDLVVGNSFITMYSRSGSFRGARR 155

Query: 113 -----PY--LVSCNAIVAGFINNKLFQ-QAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
                P+  ++S N++++G      F  +AVL+F      G+  + V+  +VI  C    
Sbjct: 156 VFDEMPFKDMISWNSLLSGLSQEGTFGFEAVLIFRDMMREGVELDHVSFTSVITTCCHET 215

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
              L   IHGL IK G    + V N ++  YS    L+A   +F +M  ++V+SWT M+ 
Sbjct: 216 DLKLARQIHGLCIKRGYESLLEVGNILMSRYSKCGVLEAVKSVFYQMSERNVVSWTTMIS 275

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
              D     DA+ IF  MR   +  + V  + L++       +K G ++H   +  G  S
Sbjct: 276 SNRD-----DAVSIFLNMRLDGVYPNEVTFVGLLNAVKCNEQIKEGLKIHGLCIKTGFVS 330

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           E  + NS I MY+K   L+ ++  F+ IT + ++SW A+ISG+ QNG + EAL  F+   
Sbjct: 331 EPSVGNSFITMYAKFEALEDAKKAFDDITFREIISWNAMISGFAQNGFSHEALKMFLSAT 390

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
            E   +  +   V    A  E  +++   + H    + G      V + L+  Y+K GN+
Sbjct: 391 AETMPNEYTFGSVLNAIAFAEDISVKHGQRCHAHLLKLGLNSCPVVSSALLDMYAKRGNI 450

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           + +  VF EM   R+   W +II  Y  +G   + + L+H+M +    PD  T+LS+L A
Sbjct: 451 NESEKVFNEMS-QRNQFVWTSIISAYSSHGDFNSVMNLFHEMIKENVAPDLVTFLSVLTA 509

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C   G+ + G  I N MIE+  ++PS EHY C+VD+L RAG L +A  L  ++  G G +
Sbjct: 510 CNRKGMVDKGHEILNMMIEDYNLEPSHEHYSCMVDMLGRAGRLKEAEELMSEVPGGPGES 569

Query: 525 IWRALLSGCVLH 536
           + +++L  C LH
Sbjct: 570 MLQSMLGSCRLH 581



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 109/368 (29%), Positives = 179/368 (48%), Gaps = 24/368 (6%)

Query: 149 NAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIF 208
           + VT+   ++ C     R  C+ IHG +   G    V V+N+V+ MY      D A+ IF
Sbjct: 2   DEVTLCLALKACRGDLKRG-CQ-IHGFSTTCGFTSFVCVSNAVMGMYRKAGRFDNALYIF 59

Query: 209 REMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLK 268
             +   DV+SW  ++  F D +    AL     M+ + ++ D       +S        +
Sbjct: 60  ENLVDPDVVSWNTILSGFDDNQI---ALNFVVRMKSAGVVFDAFTYSTALSFCVGSEGFR 116

Query: 269 RGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYV 328
            G QL + VV  GL+S+L + NS I MYS+ G    +R VF+++  K ++SW +++SG  
Sbjct: 117 LGLQLQSTVVKSGLESDLVVGNSFITMYSRSGSFRGARRVFDEMPFKDMISWNSLLSGLS 176

Query: 329 QNGC-AREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRY 387
           Q G    EA+  F  M +E  + +D ++  S++T       L++  Q+HG+  + G+   
Sbjct: 177 QEGTFGFEAVLIFRDMMREGVE-LDHVSFTSVITTCCHETDLKLARQIHGLCIKRGYESL 235

Query: 388 RSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMT 447
             V N L+S YSKCG ++    VF +M   R+VVSW T+I     + + + A++++  M 
Sbjct: 236 LEVGNILMSRYSKCGVLEAVKSVFYQMS-ERNVVSWTTMI-----SSNRDDAVSIFLNMR 289

Query: 448 ETGEVPDSSTYLSILNA--CGHA---GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLA 502
             G  P+  T++ +LNA  C      GL   GL I    + E  V  S       + + A
Sbjct: 290 LDGVYPNEVTFVGLLNAVKCNEQIKEGLKIHGLCIKTGFVSEPSVGNS------FITMYA 343

Query: 503 RAGCLSDA 510
           +   L DA
Sbjct: 344 KFEALEDA 351



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/233 (21%), Positives = 103/233 (44%), Gaps = 31/233 (13%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           +P   +  ++ Y K   +++A+  FD+I  + ++SW+ +I G++ NGF  +++K F    
Sbjct: 331 EPSVGNSFITMYAKFEALEDAKKAFDDITFREIISWNAMISGFAQNGFSHEALKMFLSAT 390

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLEL--ARSIHGLMVKFGLES----------------- 104
            +  +PN +T   VL A A  +++ +   +  H  ++K GL S                 
Sbjct: 391 -AETMPNEYTFGSVLNAIAFAEDISVKHGQRCHAHLLKLGLNSCPVVSSALLDMYAKRGN 449

Query: 105 -----DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                 +F  +         +I++ + ++  F   + LF+      + P+ VT L+V+  
Sbjct: 450 INESEKVFNEMSQRNQFVWTSIISAYSSHGDFNSVMNLFHEMIKENVAPDLVTFLSVLTA 509

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME 212
           C   G      +  G  I   +I D ++  S  + YSC++D+       +E E
Sbjct: 510 CNRKGM-----VDKGHEILNMMIEDYNLEPS-HEHYSCMVDMLGRAGRLKEAE 556


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 156/530 (29%), Positives = 259/530 (48%), Gaps = 81/530 (15%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           LF+ ++NP  V  N ++ G  +++    A+  +     SG  PN  T  ++ + C  +  
Sbjct: 84  LFKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRG 143

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMY---------------SCLMD---------- 200
               + +H   +KLGL  +  V+ S+++MY               S + D          
Sbjct: 144 AHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITG 203

Query: 201 ------LDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVAL 254
                 LD A ++F E+  +DV+SW  M+  +       +A+  F EMR++++  +   +
Sbjct: 204 YASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTM 263

Query: 255 LNLISVNAILGD-LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT 313
           L+++S  A  G  L+ G  + + +   GL S +RL N +I MY KCGDL+ + ++F +I 
Sbjct: 264 LSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQ 323

Query: 314 EKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICL 373
           +K++VSW  +I GY    C +EAL  F +M Q   D  D +T +SIL A   L AL++  
Sbjct: 324 DKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPND-VTFLSILPACANLGALDLGK 382

Query: 374 QLHGIAFEAGFPRYRSVQNC------LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
            +H    +      +S++N       LI  Y+KCG++ +A  +F+ M   + + +WN +I
Sbjct: 383 WVHAYVDK----NMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMN-TKSLATWNAMI 437

Query: 428 YGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKV 487
            G+ ++GH +TAL L+ +MT  G VPD  T++ +L AC HAGL + G   F+ MI++ KV
Sbjct: 438 SGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKV 497

Query: 488 KPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN--IWRALLSGCVLH--------- 536
            P   HYGC++DL  RAG   +A  L   +   M P+  IW +LL  C +H         
Sbjct: 498 SPKLPHYGCMIDLFGRAGLFDEAETLVKNM--EMKPDGAIWCSLLGACRIHRRIELAESV 555

Query: 537 ------------------------VGRFQDAEALRSGSQKKGIIKIPGIS 562
                                    GR++D   +R+      + K+PG S
Sbjct: 556 AKHLFELEPENPSAYVLLSNIYAGAGRWEDVAKIRTRLNDNRMKKVPGCS 605



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 137/531 (25%), Positives = 232/531 (43%), Gaps = 68/531 (12%)

Query: 19  GKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVL 78
           G +  A +LF  I   N V W+ +I G S +     +++ + HM+ SG  PN +T   + 
Sbjct: 76  GDLSYALSLFKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIF 135

Query: 79  VAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY--------------------LV 116
            +   ++     + +H  ++K GLE + F    L N Y                     V
Sbjct: 136 KSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAV 195

Query: 117 SCNAIVAGFINNKLFQQAVLLFN----------------------------FF---RGSG 145
           S  A++ G+ +     +A  LF+                            FF   R + 
Sbjct: 196 SFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAK 255

Query: 146 LVPNAVTMLTVIRGCVALGSR-ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAA 204
           + PN  TML+V+  C   GS   L   +       GL  ++ + N ++DMY    DL+ A
Sbjct: 256 VTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEA 315

Query: 205 IQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAIL 264
             +F +++ K+V+SW  M+G +       +AL +FR M +S I  + V  L+++   A L
Sbjct: 316 SNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANL 375

Query: 265 GDLKRGKQLHAQVV--LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTA 322
           G L  GK +HA V   +  +++ + L  S+I MY+KCGDL  ++ +F+ +  KSL +W A
Sbjct: 376 GALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNA 435

Query: 323 IISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQ-----LHG 377
           +ISG+  +G    AL  F +M  E     D IT V +LTA      L +  +     +  
Sbjct: 436 MISGFAMHGHTDTALGLFSRMTSEGF-VPDDITFVGVLTACKHAGLLSLGRRYFSSMIQD 494

Query: 378 IAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGE 437
                  P Y     C+I  + + G  D A  + + M    D   W +++    ++   E
Sbjct: 495 YKVSPKLPHY----GCMIDLFGRAGLFDEAETLVKNMEMKPDGAIWCSLLGACRIHRRIE 550

Query: 438 TALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVK 488
            A ++   + E  E  + S Y+ + N    AG   D   I  ++  +N++K
Sbjct: 551 LAESVAKHLFEL-EPENPSAYVLLSNIYAGAGRWEDVAKIRTRL-NDNRMK 599



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 164/338 (48%), Gaps = 26/338 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D  + + L++ Y   G + EA  LFDEIP ++VVSW+ +I GY+ +G  E++M  F  M 
Sbjct: 193 DAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMR 252

Query: 64  LSGLLPNSFTMVGVLVAAA----GLQ----------------NLELARSIHGLMVKFG-L 102
            + + PN  TM+ VL A A     LQ                N+ L   +  + VK G L
Sbjct: 253 RAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDL 312

Query: 103 E--SDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
           E  S+LFE +++  +VS N ++ G+ +   +++A+ LF     S + PN VT L+++  C
Sbjct: 313 EEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPAC 372

Query: 161 VALGSRALCELIHGLTIK--LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
             LG+  L + +H    K    +   V++  S++DMY+   DL  A +IF  M  K + +
Sbjct: 373 ANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLAT 432

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           W  M+  F    +   AL +F  M     + D +  + +++     G L  G++  + ++
Sbjct: 433 WNAMISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMI 492

Query: 279 LG-GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK 315
               +  +L     +I ++ + G  D + ++   +  K
Sbjct: 493 QDYKVSPKLPHYGCMIDLFGRAGLFDEAETLVKNMEMK 530



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 100/394 (25%), Positives = 187/394 (47%), Gaps = 45/394 (11%)

Query: 200 DLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLIS 259
           DL  A+ +F+ +   + + W  M+      E    AL+ +  M  S    +     ++  
Sbjct: 77  DLSYALSLFKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFK 136

Query: 260 VNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVS 319
               +     GKQ+HA V+  GL+    +  S+I MY++ G+L ++R VF++ + +  VS
Sbjct: 137 SCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVS 196

Query: 320 WTAI-------------------------------ISGYVQNGCAREALNQFIKMRQEKT 348
           +TA+                               ISGY Q+G   EA+  F +MR+ K 
Sbjct: 197 FTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKV 256

Query: 349 DSVDSITLVSILTASGEL-AALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
            + +  T++S+L+A  +  ++L++   +     + G      + N LI  Y KCG+++ A
Sbjct: 257 -TPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEA 315

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
             +FE++   ++VVSWN +I GY      + AL L+ +M ++   P+  T+LSIL AC +
Sbjct: 316 SNLFEKIQD-KNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACAN 374

Query: 468 AGLTNDGLVIFNQMIEEN--KVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN- 524
            G  + G  + +  +++N   +K +   +  ++D+ A+ G L+    +A ++ + M    
Sbjct: 375 LGALDLGKWV-HAYVDKNMKSMKNTVALWTSLIDMYAKCGDLA----VAKRIFDCMNTKS 429

Query: 525 --IWRALLSGCVLHVGRFQDAEALRSGSQKKGII 556
              W A++SG  +H G    A  L S    +G +
Sbjct: 430 LATWNAMISGFAMH-GHTDTALGLFSRMTSEGFV 462



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 114/251 (45%), Gaps = 48/251 (19%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+  Y K G ++EA NLF++I +KNVVSW+++I GY+    +++++  F  MM S + PN
Sbjct: 302 LIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPN 361

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVK------------------------FGLESDL 106
             T + +L A A L  L+L + +H  + K                          +   +
Sbjct: 362 DVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRI 421

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC-----V 161
           F+ +    L + NA+++GF  +     A+ LF+     G VP+ +T + V+  C     +
Sbjct: 422 FDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTACKHAGLL 481

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDL-------DAAIQIFREMECK 214
           +LG R    +I    +           +  L  Y C++DL       D A  + + ME K
Sbjct: 482 SLGRRYFSSMIQDYKV-----------SPKLPHYGCMIDLFGRAGLFDEAETLVKNMEMK 530

Query: 215 -DVISWTRMMG 224
            D   W  ++G
Sbjct: 531 PDGAIWCSLLG 541


>gi|357129947|ref|XP_003566620.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Brachypodium distachyon]
          Length = 902

 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 169/620 (27%), Positives = 298/620 (48%), Gaps = 61/620 (9%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           S L++ Y K G I +A  +FD   EKNVV W+ +++G   N +  ++++ F +M   GL 
Sbjct: 239 SSLINLYAKCGCIGDAILVFDCSGEKNVVMWNAMLNGLVRNEYQVEAIQMFLYMKRLGLE 298

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVK-------------------FGLESD---L 106
            + FT V VL A A L +  L R +  + +K                   FG   D   L
Sbjct: 299 ADEFTYVSVLGACAHLDSHCLGRQVQCVTIKNCMDASLFVANATLDMHSKFGAIDDAKTL 358

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           F  +     VS NA++ G  +N+  ++A+ +       G+ P+ V+  TVI  C  + + 
Sbjct: 359 FNLITYKDTVSWNALLVGLTHNEEDEEAIHMLKGMNLDGVTPDEVSFATVINACSNIRAT 418

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
              + IH L +K  +  + +V +S++D YS   D+++  ++  +++   ++    ++   
Sbjct: 419 ETGKQIHCLAMKHSICSNHAVGSSLIDFYSKHGDVESCRKVLAQVDASSIVPRNVLIAGL 478

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG-LQSE 285
           V      +A+ +F+++ +  +   +    +++S    L     GKQ+H   +  G L  +
Sbjct: 479 VQNNREDEAIDLFQQVLRDGLKPSSFTFSSILSGCTGLLSSIIGKQVHCYTLKSGFLNDD 538

Query: 286 LRLSNSIIAMYSKCG-DLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
             +  S++  Y K     D+++ +      K+LV WTAI+SGY QNG + ++L  F +MR
Sbjct: 539 TSVGVSLVGTYLKARMPEDANKLLIEMPDHKNLVEWTAIVSGYAQNGYSYQSLLSFWRMR 598

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
                  D +T  SIL A  E+ AL    ++HG+  ++GF  Y++  + +I  YSKCG++
Sbjct: 599 SYDVHP-DEVTFASILKACSEMTALSDGKEIHGLIIKSGFGSYKTATSAIIDMYSKCGDI 657

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
             ++  F+E+   +D+  WN++I G+  NG+ + AL L+ KM ++    D  T+L +L A
Sbjct: 658 ISSFEAFKELKSKQDITLWNSMILGFAKNGYADEALLLFQKMQDSQIKSDEVTFLGVLIA 717

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C HAGL ++G   F+ M +   + P  +HY C +DLL R G L +A  +  +L       
Sbjct: 718 CAHAGLISEGRHYFDSMSKVYGIMPRVDHYACFIDLLGRGGHLQEAQEVINELPFRPDGV 777

Query: 525 IWRALLSGCVLH---------------------------------VGRFQDAEALRSGSQ 551
           IW   L+ C +H                                  G + +A+  R   +
Sbjct: 778 IWATYLAACRMHKDEERGEIAAKELVELEPQNSSTYVLLSNMYAAAGNWVEAKMAREAMR 837

Query: 552 KKGIIKIPGISFL---NSTS 568
           +KG  K PG S++   N TS
Sbjct: 838 EKGATKFPGCSWITVGNKTS 857



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 115/462 (24%), Positives = 219/462 (47%), Gaps = 17/462 (3%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           + ++ L++ Y + G++ +A  +F  I   + V W+ +I GY   G  ++++  F+ M   
Sbjct: 67  FCAAALVNMYARCGRVGDARRVFGGISLPDTVCWASMISGYHRAGRFQEAVCLFTRMEKM 126

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPY-LVSCNAIVAG 124
           G  P+  T V V+ A   L  LE AR+             L   +  P   V+ NA+++G
Sbjct: 127 GSSPDRVTCVAVVCALTALGRLEDART-------------LLHRMPAPSSTVAWNAVISG 173

Query: 125 FINNKLFQQAVL-LFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLIL 183
           +      +  V  L+   R  GL P   T  +++       +      +H   ++ GL  
Sbjct: 174 YAQQSGIEHEVFGLYKDMRCWGLWPTRSTFASMLSAAANATAFIEGRQVHAAAVRHGLDA 233

Query: 184 DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMR 243
           +V V +S++++Y+    +  AI +F     K+V+ W  M+   V  EY  +A+++F  M+
Sbjct: 234 NVFVGSSLINLYAKCGCIGDAILVFDCSGEKNVVMWNAMLNGLVRNEYQVEAIQMFLYMK 293

Query: 244 KSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLD 303
           +  +  D    ++++   A L     G+Q+    +   + + L ++N+ + M+SK G +D
Sbjct: 294 RLGLEADEFTYVSVLGACAHLDSHCLGRQVQCVTIKNCMDASLFVANATLDMHSKFGAID 353

Query: 304 SSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTAS 363
            ++++FN IT K  VSW A++ G   N    EA++    M  +   + D ++  +++ A 
Sbjct: 354 DAKTLFNLITYKDTVSWNALLVGLTHNEEDEEAIHMLKGMNLDGV-TPDEVSFATVINAC 412

Query: 364 GELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSW 423
             + A E   Q+H +A +       +V + LI  YSK G+V+    V  ++     +V  
Sbjct: 413 SNIRATETGKQIHCLAMKHSICSNHAVGSSLIDFYSKHGDVESCRKVLAQVD-ASSIVPR 471

Query: 424 NTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
           N +I G   N   + A+ L+ ++   G  P S T+ SIL+ C
Sbjct: 472 NVLIAGLVQNNREDEAIDLFQQVLRDGLKPSSFTFSSILSGC 513



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/337 (23%), Positives = 155/337 (45%), Gaps = 26/337 (7%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C +    S L+  Y K G ++    +  ++   ++V  +++I G   N   ++++  F  
Sbjct: 434 CSNHAVGSSLIDFYSKHGDVESCRKVLAQVDASSIVPRNVLIAGLVQNNREDEAIDLFQQ 493

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------- 105
           ++  GL P+SFT   +L    GL +  + + +H   +K G  +D                
Sbjct: 494 VLRDGLKPSSFTFSSILSGCTGLLSSIIGKQVHCYTLKSGFLNDDTSVGVSLVGTYLKAR 553

Query: 106 --------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
                   L E   +  LV   AIV+G+  N    Q++L F   R   + P+ VT  +++
Sbjct: 554 MPEDANKLLIEMPDHKNLVEWTAIVSGYAQNGYSYQSLLSFWRMRSYDVHPDEVTFASIL 613

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK-DV 216
           + C  + + +  + IHGL IK G     +  ++++DMYS   D+ ++ + F+E++ K D+
Sbjct: 614 KACSEMTALSDGKEIHGLIIKSGFGSYKTATSAIIDMYSKCGDIISSFEAFKELKSKQDI 673

Query: 217 ISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQ-LHA 275
             W  M+  F    YA +AL +F++M+ S+I  D V  L ++   A  G +  G+    +
Sbjct: 674 TLWNSMILGFAKNGYADEALLLFQKMQDSQIKSDEVTFLGVLIACAHAGLISEGRHYFDS 733

Query: 276 QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQI 312
              + G+   +      I +  + G L  ++ V N++
Sbjct: 734 MSKVYGIMPRVDHYACFIDLLGRGGHLQEAQEVINEL 770



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 134/327 (40%), Gaps = 39/327 (11%)

Query: 143 GSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLD 202
           G G+ P+   +   +  C  LG+    +  H    K GL        ++++MY+    + 
Sbjct: 24  GGGVRPDQFDLAATLSACSRLGALVSGKQAHCDAEKRGLGSGAFCAAALVNMYARCGRVG 83

Query: 203 AAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNA 262
            A ++F  +   D + W  M+  +       +A+ +F  M K     D V  +       
Sbjct: 84  DARRVFGGISLPDTVCWASMISGYHRAGRFQEAVCLFTRMEKMGSSPDRVTCV------- 136

Query: 263 ILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQI-TEKSLVSWT 321
                                       +++   +  G L+ +R++ +++    S V+W 
Sbjct: 137 ----------------------------AVVCALTALGRLEDARTLLHRMPAPSSTVAWN 168

Query: 322 AIISGYV-QNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAF 380
           A+ISGY  Q+G   E    +  MR        S T  S+L+A+    A     Q+H  A 
Sbjct: 169 AVISGYAQQSGIEHEVFGLYKDMRCWGLWPTRS-TFASMLSAAANATAFIEGRQVHAAAV 227

Query: 381 EAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETAL 440
             G      V + LI+ Y+KCG +  A +VF+  G  ++VV WN ++ G   N +   A+
Sbjct: 228 RHGLDANVFVGSSLINLYAKCGCIGDAILVFDCSG-EKNVVMWNAMLNGLVRNEYQVEAI 286

Query: 441 ALYHKMTETGEVPDSSTYLSILNACGH 467
            ++  M   G   D  TY+S+L AC H
Sbjct: 287 QMFLYMKRLGLEADEFTYVSVLGACAH 313



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 112/271 (41%), Gaps = 56/271 (20%)

Query: 250 DTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVF 309
           D   L   +S  + LG L  GKQ H      GL S    + +++ MY++CG +  +R VF
Sbjct: 30  DQFDLAATLSACSRLGALVSGKQAHCDAEKRGLGSGAFCAAALVNMYARCGRVGDARRVF 89

Query: 310 NQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAAL 369
             I+    V W ++ISGY + G  +EA+  F +M ++   S D +T V+++ A   L AL
Sbjct: 90  GGISLPDTVCWASMISGYHRAGRFQEAVCLFTRM-EKMGSSPDRVTCVAVVCA---LTAL 145

Query: 370 EICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYG 429
                                           G ++ A  +   M      V+WN +I G
Sbjct: 146 --------------------------------GRLEDARTLLHRMPAPSSTVAWNAVISG 173

Query: 430 YG-VNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVK 488
           Y   +G       LY  M   G  P  ST+ S+L+A  +A             IE  +V 
Sbjct: 174 YAQQSGIEHEVFGLYKDMRCWGLWPTRSTFASMLSAAANA----------TAFIEGRQVH 223

Query: 489 PSQEHYG---------CVVDLLARAGCLSDA 510
            +   +G          +++L A+ GC+ DA
Sbjct: 224 AAAVRHGLDANVFVGSSLINLYAKCGCIGDA 254


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 158/555 (28%), Positives = 268/555 (48%), Gaps = 60/555 (10%)

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------L 106
           P   T   +L   A   +L   R++H  +   GL S+                      +
Sbjct: 14  PVLRTFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRV 73

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGS--GLVPNAVTMLTVIRGCVALG 164
           F+ + +   V+ NA+VAG+  N L   A+      +G   G  P++VT+++V+  C    
Sbjct: 74  FDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADAR 133

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
           +   C  +H   ++ GL   V+V+ +VLD Y     ++AA  +F  M  ++ +SW  M+ 
Sbjct: 134 ALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMID 193

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            + D   A +A+ +F  M +  +     ++L  +     LG L   +++H  +V  GL S
Sbjct: 194 GYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVRVGLSS 253

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQI-TEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
            + ++N++I  Y+KC   D +  VFN++  +K+ +SW A+I G+ QN C  +A   F +M
Sbjct: 254 NVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFARM 313

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
           + E     DS TLVS++ A  +++       +HG +      +   V   LI  YSKCG 
Sbjct: 314 QLENVRP-DSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDVYVLTALIDMYSKCGR 372

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           V +A  +F+     R V++WN +I+GYG +G G+ A+ L+ +M  TG +P+ +T+LS+L 
Sbjct: 373 VSIARRLFDS-ARDRHVITWNAMIHGYGSHGFGQAAVELFEEMKGTGSLPNETTFLSVLA 431

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
           AC HAGL ++G   F  M ++  ++P  EHYG +VDLL RAG L +A      +    G 
Sbjct: 432 ACSHAGLVDEGQKYFASMKKDYGLEPGMEHYGTMVDLLGRAGKLDEAWSFIKNMPIEPGI 491

Query: 524 NIWRALLSGCVLH---------------------------------VGRFQDAEALRSGS 550
           +++ A+L  C LH                                    ++D   +R+  
Sbjct: 492 SVYGAMLGACKLHKNVELAEESAQIIFELGPEEGVYHVLLANIYANASMWKDVARVRTAM 551

Query: 551 QKKGIIKIPGISFLN 565
           +KKG+ K PG S + 
Sbjct: 552 EKKGLQKTPGWSIIQ 566



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 104/381 (27%), Positives = 188/381 (49%), Gaps = 28/381 (7%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM--LS 65
           S+ L + YFK  +  +A  +FD +P ++ V+W+ V+ GY+ NG    +M+A   M     
Sbjct: 54  STALANMYFKCRRPADARRVFDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEG 113

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES--------------------- 104
           G  P+S T+V VL A A  + L   R +H   ++ GL+                      
Sbjct: 114 GERPDSVTLVSVLPACADARALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAA 173

Query: 105 -DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
             +F+ +     VS NA++ G+ +N    +A+ LF      G+     ++L  ++ C  L
Sbjct: 174 RAVFDCMPVRNSVSWNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGEL 233

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV-ISWTRM 222
           G       +H L +++GL  +VSV N+++  Y+     D A Q+F E+  K   ISW  M
Sbjct: 234 GYLDEVRRVHELLVRVGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAM 293

Query: 223 MGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL 282
           +  F   E   DA ++F  M+   +  D+  L+++I   A + D  + + +H   +   L
Sbjct: 294 ILGFTQNECPEDAERLFARMQLENVRPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQL 353

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
             ++ +  ++I MYSKCG +  +R +F+   ++ +++W A+I GY  +G  + A+  F +
Sbjct: 354 DQDVYVLTALIDMYSKCGRVSIARRLFDSARDRHVITWNAMIHGYGSHGFGQAAVELFEE 413

Query: 343 MRQEKTDSV-DSITLVSILTA 362
           M+   T S+ +  T +S+L A
Sbjct: 414 MK--GTGSLPNETTFLSVLAA 432



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 155/329 (47%), Gaps = 24/329 (7%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ +L  Y K G ++ A  +FD +P +N VSW+ +I GY+ NG   ++M  F  M+  G+
Sbjct: 157 STAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYADNGNATEAMALFWRMVQEGV 216

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
                +++  L A   L  L+  R +H L+V+ GL S+                      
Sbjct: 217 DVTDASVLAALQACGELGYLDEVRRVHELLVRVGLSSNVSVTNALITTYAKCKRADLAAQ 276

Query: 106 LFEGLKNPYL-VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
           +F  L N    +S NA++ GF  N+  + A  LF   +   + P++ T+++VI     + 
Sbjct: 277 VFNELGNKKTRISWNAMILGFTQNECPEDAERLFARMQLENVRPDSFTLVSVIPAVADIS 336

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
                  IHG +I+  L  DV V  +++DMYS    +  A ++F     + VI+W  M+ 
Sbjct: 337 DPLQARWIHGYSIRHQLDQDVYVLTALIDMYSKCGRVSIARRLFDSARDRHVITWNAMIH 396

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG-GLQ 283
            +    +   A+++F EM+ +  + +    L++++  +  G +  G++  A +    GL+
Sbjct: 397 GYGSHGFGQAAVELFEEMKGTGSLPNETTFLSVLAACSHAGLVDEGQKYFASMKKDYGLE 456

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQI 312
             +    +++ +  + G LD + S    +
Sbjct: 457 PGMEHYGTMVDLLGRAGKLDEAWSFIKNM 485



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 57/102 (55%), Gaps = 3/102 (2%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + L+  Y K G++  A  LFD   +++V++W+ +IHGY  +GF + +++ F  M 
Sbjct: 356 DVYVLTALIDMYSKCGRVSIARRLFDSARDRHVITWNAMIHGYGSHGFGQAAVELFEEMK 415

Query: 64  LSGLLPNSFTMVGVLVAA--AGLQNLELARSIHGLMVKFGLE 103
            +G LPN  T + VL A   AGL + E  +    +   +GLE
Sbjct: 416 GTGSLPNETTFLSVLAACSHAGLVD-EGQKYFASMKKDYGLE 456


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 162/568 (28%), Positives = 279/568 (49%), Gaps = 33/568 (5%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS-GL 67
           +KL       G I  A ++F  +   +V  +++++ G+S+N     S+  F+H+  S  L
Sbjct: 56  TKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDL 115

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL--------------------- 106
            PNS T    + AA+G ++    R IHG  V  G +S+L                     
Sbjct: 116 KPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARK 175

Query: 107 -FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLF-NFFRGSGLVPNAVTMLTVIRGCVALG 164
            F+ +     +  N +++G+  N+++ +++ +F +    S    +  T+L ++     L 
Sbjct: 176 VFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQ 235

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
              L   IH L  K G      V    + +YS    +     +FRE    D++++  M+ 
Sbjct: 236 ELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIH 295

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            +        +L +F+E+  S     +  L++L+ V+   G L     +H   +     S
Sbjct: 296 GYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVS---GHLMLIYAIHGYCLKSNFLS 352

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
              +S ++  +YSK  +++S+R +F++  EKSL SW A+ISGY QNG   +A++ F +M 
Sbjct: 353 HASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREM- 411

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
           Q+   S + +T+  IL+A  +L AL +   +H +     F     V   LI  Y+KCG++
Sbjct: 412 QKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSI 471

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
             A  +F+ M   ++ V+WNT+I GYG++G G+ AL ++++M  +G  P   T+L +L A
Sbjct: 472 AEARRLFDLMT-KKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYA 530

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C HAGL  +G  IFN MI     +PS +HY C+VD+L RAG L  A      +    G +
Sbjct: 531 CSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSS 590

Query: 525 IWRALLSGCVLHVGRFQDAEALRSGSQK 552
           +W  LL  C +H    +D    R+ S+K
Sbjct: 591 VWETLLGACRIH----KDTNLARTVSEK 614



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 127/483 (26%), Positives = 228/483 (47%), Gaps = 38/483 (7%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM-LSGL 67
           S ++  YFK  ++++A  +FD +PEK+ + W+ +I GY  N  + +S++ F  ++  S  
Sbjct: 158 SNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCT 217

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG----------------------LESD 105
             ++ T++ +L A A LQ L L   IH L  K G                      + S 
Sbjct: 218 RLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSA 277

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           LF   + P +V+ NA++ G+ +N   + ++ LF     SG    + T+++++      G 
Sbjct: 278 LFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLV---PVSGH 334

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
             L   IHG  +K   +   SV+ ++  +YS L ++++A ++F E   K + SW  M+  
Sbjct: 335 LMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISG 394

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +       DA+ +FREM+KS    + V +  ++S  A LG L  GK +H  V     +S 
Sbjct: 395 YTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESS 454

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           + +S ++I MY+KCG +  +R +F+ +T+K+ V+W  +ISGY  +G  +EALN F +M  
Sbjct: 455 IYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLN 514

Query: 346 EKTDSVDSITLVSILTASGELAALE-----ICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
                   +T + +L A      ++         +H   FE     Y     C++    +
Sbjct: 515 SGITPT-PVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHY----ACMVDILGR 569

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
            G++  A    E M        W T++    ++     A  +  K+ E    PD+  Y  
Sbjct: 570 AGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELD--PDNVGYHV 627

Query: 461 ILN 463
           +L+
Sbjct: 628 LLS 630



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 111/248 (44%), Gaps = 38/248 (15%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ L + Y K  +I+ A  LFDE PEK++ SW+ +I GY+ NG  E ++  F  M  S  
Sbjct: 357 STALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEF 416

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
            PN  T+  +L A A L  L L + +H L+     ES                       
Sbjct: 417 SPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARR 476

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG- 164
           LF+ +     V+ N +++G+  +   Q+A+ +F     SG+ P  VT L V+  C   G 
Sbjct: 477 LFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGL 536

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMD-------LDAAIQIFREMECKDVI 217
            +   E+ + +  + G   + SV +     Y+C++D       L  A+Q    M  +   
Sbjct: 537 VKEGDEIFNSMIHRYG--FEPSVKH-----YACMVDILGRAGHLQRALQFIEAMSIEPGS 589

Query: 218 S-WTRMMG 224
           S W  ++G
Sbjct: 590 SVWETLLG 597



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 94/215 (43%), Gaps = 8/215 (3%)

Query: 257 LISVNAILGDLKRGK------QLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFN 310
           LIS N  L   KR        Q HAQ++L G ++++ L   +    S  G +  +R +F 
Sbjct: 17  LISKNTYLDFFKRSTSISHLAQTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFL 76

Query: 311 QITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALE 370
            +    +  +  ++ G+  N     +L+ F  +R+      +S T    ++A+       
Sbjct: 77  SVQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDR 136

Query: 371 ICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGY 430
               +HG A   G      + + ++  Y K   V+ A  VF+ M   +D + WNT+I GY
Sbjct: 137 AGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMP-EKDTILWNTMISGY 195

Query: 431 GVNGHGETALALYHKM-TETGEVPDSSTYLSILNA 464
             N     ++ ++  +  E+    D++T L IL A
Sbjct: 196 RKNEMYVESIQVFRDLINESCTRLDTTTLLDILPA 230



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 1/99 (1%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y S+ L+  Y K G I EA  LFD + +KN V+W+ +I GY ++G  ++++  F  M+ S
Sbjct: 456 YVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNS 515

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMV-KFGLE 103
           G+ P   T + VL A +    ++    I   M+ ++G E
Sbjct: 516 GITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFE 554


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  243 bits (621), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 161/552 (29%), Positives = 269/552 (48%), Gaps = 58/552 (10%)

Query: 70   NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------------F 107
            ++ T++ VL A AG  +LEL + +HG+ VK GL+SD+                      F
Sbjct: 903  DAVTLLVVLAAVAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVF 962

Query: 108  EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL-GSR 166
              +K+  L+S N++++    + L +++V LF      GL P+  T+ +V+R C +L    
Sbjct: 963  NDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGL 1022

Query: 167  ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
             +   IH   +K G I D  V  +++D+YS    ++ A  +F+  +  D+  W  MM  +
Sbjct: 1023 NISRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGY 1082

Query: 227  VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
            +       AL++F  + KS    D + L         L  L +GKQ+HA  +  G  S+L
Sbjct: 1083 IIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDL 1142

Query: 287  RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
             +++ I+ MY KCGD+ ++  VFN I+    V+WT++ISG V NG   +AL  + +MRQ 
Sbjct: 1143 HVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQS 1202

Query: 347  KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
            +    D  T  +++ AS  + ALE   QLH    +        V   L+  Y+KCGN++ 
Sbjct: 1203 RV-MPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIED 1261

Query: 407  AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
            AY +F++M  +R++  WN ++ G   +G+ E A+ L+  M   G  PD  +++ IL+AC 
Sbjct: 1262 AYRLFKKMN-VRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACS 1320

Query: 467  HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIW 526
            HAGLT++     + M  +  ++P  EHY C+VD L RAG + +A  +   +      +I 
Sbjct: 1321 HAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASIN 1380

Query: 527  RALLSGCVLH---------------------------------VGRFQDAEALRSGSQKK 553
            RALL  C +                                    R+ D    R   ++K
Sbjct: 1381 RALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRK 1440

Query: 554  GIIKIPGISFLN 565
             + K PG S+++
Sbjct: 1441 NVKKDPGFSWID 1452



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 149/557 (26%), Positives = 272/557 (48%), Gaps = 17/557 (3%)

Query: 4    DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
            D + S  L++ Y K G++++A  LFD + E++VV W++++ GY   G  +++ + FS   
Sbjct: 761  DVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFH 820

Query: 64   LSGLLPNSFTMVGVLVAAAGLQNLE---LARSIHGLMVKFGLESDLFEGLKNPYLVSCNA 120
             SGL P+ F++  +L   + +   E   LA  +     K  L  D      NP +   N 
Sbjct: 821  RSGLRPDEFSVQLILNGVSEVNWDEGKWLADQVQAYAAKLSLSDD------NPDVFCWNK 874

Query: 121  IVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLG 180
             ++  +       A+  F    G  +  +AVT+L V+          L + +HG+ +K G
Sbjct: 875  KLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQVHGIAVKSG 934

Query: 181  LILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFR 240
            L  DVSV NS+++MYS +     A ++F +M+  D+ISW  M+          +++ +F 
Sbjct: 935  LDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFI 994

Query: 241  EMRKSRIICDTVALLNLI-SVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKC 299
            ++    +  D   L +++ + ++++  L   +Q+H   +  G  ++  ++ ++I +YSK 
Sbjct: 995  DLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIADSFVATTLIDVYSKS 1054

Query: 300  GDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSI 359
            G ++ +  +F    +  L  W A++ GY+     ++AL  F  + +    S D ITL + 
Sbjct: 1055 GKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKS-DQITLATA 1113

Query: 360  LTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRD 419
              A G L  L+   Q+H  A +AGF     V + ++  Y KCG++  A IVF  +    D
Sbjct: 1114 AKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYIS-APD 1172

Query: 420  VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFN 479
             V+W ++I G   NG+ + AL +YH+M ++  +PD  T+ +++ A         G  +  
Sbjct: 1173 DVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHA 1232

Query: 480  QMIEENKVKPSQEHYGC-VVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVG 538
             +I+ + V  S    G  +VD+ A+ G + DA  L  K +      +W A+L G   H G
Sbjct: 1233 NVIKLDCV--SDPFVGTSLVDMYAKCGNIEDAYRLFKK-MNVRNIALWNAMLVGLAQH-G 1288

Query: 539  RFQDAEALRSGSQKKGI 555
              ++A  L    +  GI
Sbjct: 1289 NAEEAVNLFKSMKSHGI 1305



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 151/565 (26%), Positives = 249/565 (44%), Gaps = 69/565 (12%)

Query: 4    DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGY-----SINGFHEKSMKA 58
            D + S+ LL+ Y K G +  A  +FD  PE+++V+W+ ++  Y     S +G  ++ +  
Sbjct: 655  DHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDSNDGNAQEGLHL 714

Query: 59   FSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------- 105
            F  +  S       T+  VL        L  A  +HG  +K GLE D             
Sbjct: 715  FRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSK 774

Query: 106  ---------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTV 156
                     LF+ ++   +V  N ++ G++   L ++A  LF+ F  SGL P+  ++  +
Sbjct: 775  CGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLI 834

Query: 157  IRGCVALG---SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC 213
            + G   +     + L + +     KL L  D                             
Sbjct: 835  LNGVSEVNWDEGKWLADQVQAYAAKLSLSDD----------------------------N 866

Query: 214  KDVISWTRMMGLFVDFEYAGD---ALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG 270
             DV  W + +   +   +AGD   A++ F  M    I  D V LL +++  A   DL+ G
Sbjct: 867  PDVFCWNKKLSECL---WAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELG 923

Query: 271  KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
            KQ+H   V  GL S++ ++NS++ MYSK G    +R VFN +    L+SW ++IS   Q+
Sbjct: 924  KQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQS 983

Query: 331  GCAREALNQFIKMRQEKTDSVDSITLVSILTASGEL-AALEICLQLHGIAFEAGFPRYRS 389
                E++N FI +  E     D  TL S+L A   L   L I  Q+H  A + G      
Sbjct: 984  SLEEESVNLFIDLLHEGLKP-DHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIADSF 1042

Query: 390  VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
            V   LI  YSK G ++ A  +F+    L D+  WN +++GY +   G+ AL L+  + ++
Sbjct: 1043 VATTLIDVYSKSGKMEEAEFLFQNKDDL-DLACWNAMMFGYIIGNDGKKALELFSLIHKS 1101

Query: 450  GEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSD 509
            GE  D  T  +   ACG   L + G  I    I+         + G ++D+  + G + +
Sbjct: 1102 GEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSG-ILDMYIKCGDMVN 1160

Query: 510  ASGLAGKLLEGMGPNIWRALLSGCV 534
            A G+    +       W +++SGCV
Sbjct: 1161 A-GIVFNYISAPDDVAWTSMISGCV 1184



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 118/433 (27%), Positives = 210/433 (48%), Gaps = 25/433 (5%)

Query: 8    SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
            ++ L++ Y K G    A  +F+++   +++SW+ +I   + +   E+S+  F  ++  GL
Sbjct: 942  ANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGL 1001

Query: 68   LPNSFTMVGVLVAAAGL-QNLELARSIHGLMVKFGLESD--------------------- 105
             P+ FT+  VL A + L   L ++R IH   +K G  +D                     
Sbjct: 1002 KPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAE 1061

Query: 106  -LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
             LF+   +  L   NA++ G+I     ++A+ LF+    SG   + +T+ T  + C  L 
Sbjct: 1062 FLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLV 1121

Query: 165  SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
                 + IH   IK G   D+ VN+ +LDMY    D+  A  +F  +   D ++WT M+ 
Sbjct: 1122 LLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMIS 1181

Query: 225  LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
              VD      AL+I+  MR+SR++ D      LI  ++ +  L++G+QLHA V+     S
Sbjct: 1182 GCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVS 1241

Query: 285  ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
            +  +  S++ MY+KCG+++ +  +F ++  +++  W A++ G  Q+G A EA+N F  M+
Sbjct: 1242 DPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMK 1301

Query: 345  QEKTDSVDSITLVSILTASGELA-ALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
                +  D ++ + IL+A        E    LH +  + G        +CL+ +  + G 
Sbjct: 1302 SHGIEP-DRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGL 1360

Query: 404  VDLAYIVFEEMGF 416
            V  A  V E M F
Sbjct: 1361 VQEADKVIETMPF 1373



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 77/339 (22%), Positives = 158/339 (46%), Gaps = 23/339 (6%)

Query: 4    DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
            D + ++ L+  Y KSGK++EAE LF    + ++  W+ ++ GY I    +K+++ FS + 
Sbjct: 1040 DSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIH 1099

Query: 64   LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------- 106
             SG   +  T+     A   L  L+  + IH   +K G +SDL                 
Sbjct: 1100 KSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMV 1159

Query: 107  -----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                 F  +  P  V+  ++++G ++N    QA+ +++  R S ++P+  T  T+I+   
Sbjct: 1160 NAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASS 1219

Query: 162  ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
             + +      +H   IKL  + D  V  S++DMY+   +++ A ++F++M  +++  W  
Sbjct: 1220 CVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNA 1279

Query: 222  MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQ-LHAQVVLG 280
            M+        A +A+ +F+ M+   I  D V+ + ++S  +  G      + LH+     
Sbjct: 1280 MLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDY 1339

Query: 281  GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVS 319
            G++ E+   + ++    + G +  +  V   +  K+  S
Sbjct: 1340 GIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASAS 1378



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/199 (34%), Positives = 103/199 (51%), Gaps = 7/199 (3%)

Query: 270 GKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYV- 328
           GK  HA++V+ G   +  LSN+++ MYSKCG L S+R VF+   E+ LV+W AI+  Y  
Sbjct: 640 GKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAA 699

Query: 329 ----QNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGF 384
                +G A+E L+ F ++ +    S   +TL  +L        L     +HG A + G 
Sbjct: 700 SVDSNDGNAQEGLHLF-RLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGL 758

Query: 385 PRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH 444
                V   L++ YSKCG +  A ++F+ M   RDVV WN ++ GY   G  + A  L+ 
Sbjct: 759 EWDVFVSGALVNIYSKCGRMRDARLLFDWMR-ERDVVLWNMMLKGYVQLGLEKEAFQLFS 817

Query: 445 KMTETGEVPDSSTYLSILN 463
           +   +G  PD  +   ILN
Sbjct: 818 EFHRSGLRPDEFSVQLILN 836



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 100/195 (51%), Gaps = 5/195 (2%)

Query: 156 VIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKD 215
           ++R  ++  +  L +  H   +  G   D  ++N++L MYS    L +A Q+F     +D
Sbjct: 627 LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERD 686

Query: 216 VISWTRMMGLF---VDFE--YAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG 270
           +++W  ++G +   VD     A + L +FR +R S      + L  ++ +    G L   
Sbjct: 687 LVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAA 746

Query: 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
           + +H   +  GL+ ++ +S +++ +YSKCG +  +R +F+ + E+ +V W  ++ GYVQ 
Sbjct: 747 EGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQL 806

Query: 331 GCAREALNQFIKMRQ 345
           G  +EA   F +  +
Sbjct: 807 GLEKEAFQLFSEFHR 821


>gi|449526313|ref|XP_004170158.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 706

 Score =  243 bits (621), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 175/626 (27%), Positives = 291/626 (46%), Gaps = 91/626 (14%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           +P  SSKL+  Y   G +  +  +F  + + N+  ++ ++   +  G  E+++  +  M+
Sbjct: 58  NPTLSSKLIDCYANLGLLNHSLQVFCSVIDPNLTLFNAILRNLTRYGESERTLLVYQQMV 117

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVA 123
              + P+  T   VL + +   N+   R+IHG +VK G   DLF+       V   A+  
Sbjct: 118 AKSMHPDEETYPFVLRSCSSFSNVGFGRTIHGYLVKLGF--DLFD-------VVATALAE 168

Query: 124 GFINNKLFQQAVLLFN-------------------------FFRGSG------LVPNAVT 152
            +     F+ A  LF+                          FR  G      LVP++ T
Sbjct: 169 MYEECIEFENAHQLFDKRSVKDLGWPSSLTTEGPQNDNGEGIFRVFGRMIAEQLVPDSFT 228

Query: 153 MLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME 212
              ++R    L S  L +++H + I   L  D+ VN +VL +YS L  L  A ++F +M 
Sbjct: 229 FFNLLRFIAGLNSIQLAKIVHCIAIVSKLSGDLLVNTAVLSLYSKLRSLVDARKLFDKMP 288

Query: 213 CKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQ 272
            KD + W  M+  +       + L++F+ M +S I  D    L +IS  A L  +  GKQ
Sbjct: 289 EKDRVVWNIMIAAYAREGKPTECLELFKSMARSGIRSDLFTALPVISSIAQLKCVDWGKQ 348

Query: 273 LHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC 332
            HA ++  G  S++ + NS+I MY +C  LDS+  +FN +T+KS ++             
Sbjct: 349 THAHILRNGSDSQVSVHNSLIDMYCECKILDSACKIFNWMTDKSSLT------------- 395

Query: 333 AREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN 392
              AL+ F KM+ +   + D + +++IL A   + ALE    LHG + + G     S+  
Sbjct: 396 ---ALSLFSKMKSDGIQA-DFVIMINILPAFVHIGALENVKYLHGYSMKLGLTSLPSLNT 451

Query: 393 CLISSYSKCGNVDLAYIVFEEMGF-LRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE 451
            L+ +Y+KCG++++A  +FEE     +D++ WN++I  +  +G       LY++M  +  
Sbjct: 452 ALLITYAKCGSIEMAQRLFEEEKIDDKDLIMWNSMISAHANHGDWSQCFKLYNRMKCSNS 511

Query: 452 VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDAS 511
            PD  T+L +L AC ++GL   G   F +M E    +PSQEHY C+V+LL RAG +S+A 
Sbjct: 512 KPDQVTFLGLLTACVNSGLVEKGKEFFKEMTESYGCQPSQEHYACMVNLLGRAGLISEAG 571

Query: 512 GLAGKLLEGMGPNIWRALLSGCVLH---------------------------------VG 538
            L   +       +W  LLS C +H                                  G
Sbjct: 572 ELVKNMPIKPDARVWGPLLSACKMHPGSKLAEFAAEKLINMEPRNAGNYILLSNIYAAAG 631

Query: 539 RFQDAEALRSGSQKKGIIKIPGISFL 564
           ++     +RS  + KG+ KIPG S+L
Sbjct: 632 KWDGVAKMRSFLRNKGLKKIPGCSWL 657



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 81/408 (19%), Positives = 173/408 (42%), Gaps = 20/408 (4%)

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           IH   I  G   + ++++ ++D Y+ L  L+ ++Q+F  +   ++  +  ++     +  
Sbjct: 46  IHARFILHGFHQNPTLSSKLIDCYANLGLLNHSLQVFCSVIDPNLTLFNAILRNLTRYGE 105

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
           +   L ++++M    +  D      ++   +   ++  G+ +H  +V  G      ++ +
Sbjct: 106 SERTLLVYQQMVAKSMHPDEETYPFVLRSCSSFSNVGFGRTIHGYLVKLGFDLFDVVATA 165

Query: 292 IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
           +  MY +C + +++  +F++ + K L   +++ +   QN         F +M  E+    
Sbjct: 166 LAEMYEECIEFENAHQLFDKRSVKDLGWPSSLTTEGPQNDNGEGIFRVFGRMIAEQL-VP 224

Query: 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVF 411
           DS T  ++L     L ++++   +H IA  +       V   ++S YSK  ++  A  +F
Sbjct: 225 DSFTFFNLLRFIAGLNSIQLAKIVHCIAIVSKLSGDLLVNTAVLSLYSKLRSLVDARKLF 284

Query: 412 EEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA-----CG 466
           ++M   +D V WN +I  Y   G     L L+  M  +G   D  T L ++++     C 
Sbjct: 285 DKMP-EKDRVVWNIMIAAYAREGKPTECLELFKSMARSGIRSDLFTALPVISSIAQLKCV 343

Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARA----GCLSDASGLAG-KLLEGM 521
             G      ++ N    +  V  S     C   +L  A      ++D S L    L   M
Sbjct: 344 DWGKQTHAHILRNGSDSQVSVHNSLIDMYCECKILDSACKIFNWMTDKSSLTALSLFSKM 403

Query: 522 GPNIWRA-------LLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGIS 562
             +  +A       +L   V H+G  ++ + L   S K G+  +P ++
Sbjct: 404 KSDGIQADFVIMINILPAFV-HIGALENVKYLHGYSMKLGLTSLPSLN 450


>gi|357165628|ref|XP_003580444.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic-like [Brachypodium distachyon]
          Length = 779

 Score =  243 bits (621), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 164/547 (29%), Positives = 281/547 (51%), Gaps = 34/547 (6%)

Query: 16  FKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMV 75
           ++ G +     LFD  P++NVVSW+ ++  Y   G   ++++ F  M+  G+ P   + V
Sbjct: 153 YRHGGVDVVRRLFDATPKRNVVSWNTLVGWYVKTGRPYEALEMFMRMLEDGIRPTPVSFV 212

Query: 76  GVLVAAAGLQNLELARSIHGLMVKFGLE--SDLF----------------------EGLK 111
            V  AAA   +      ++G+++K G+E  SDLF                      +   
Sbjct: 213 NVFPAAAS-DDPSWPFFLYGMLIKHGVEYVSDLFVVSSAIAMFSEIGDVQSARMVFDHAA 271

Query: 112 NPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVP-NAVTMLTVIRGCVALGSRALCE 170
              +   N ++ G++ N  F +A+ LF    GS  VP + VT L+ I          L +
Sbjct: 272 KKNIEVWNTMITGYVQNGQFSEAMDLFIQIMGSKGVPLDVVTFLSAITAASQSQDGKLGQ 331

Query: 171 LIHGLTIK-LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDF 229
            +HG  +K +   L V + N+++ MYS   ++ AA  +F ++  KD++SW  M+  FV  
Sbjct: 332 QLHGYLMKGMRSTLPVILGNALVVMYSRCGNVHAAFDLFDQLPEKDIVSWNTMVTAFVQN 391

Query: 230 EYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLS 289
           ++  + L +  +M KS  + D V L  ++S  +  GDL+ GKQ H  ++  G++ E  L 
Sbjct: 392 DFDFEGLLLVYQMHKSGFVADAVTLTAVLSAASNTGDLQIGKQSHGYLIRHGIEGE-GLE 450

Query: 290 NSIIAMYSKCGDLDSSRSVFNQI-TEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
           + +I MYSK G +D ++ VF+    ++  V+W A+I+GY Q+G   +A+  F  M +   
Sbjct: 451 SYLINMYSKSGHIDMAQRVFDGYGNDRDEVTWNAMIAGYTQSGQPEQAVLAFRAMVEAGV 510

Query: 349 DSVDSITLVSILTASGELA-ALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
           +   S+TL S+L A   +   ++   Q+H  A          V   L+  YSKCG +  A
Sbjct: 511 EPT-SVTLASVLPACEPVGEGVQAGKQIHSFALRHSLDTNIFVGTALVDMYSKCGEITAA 569

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
             VF+ M   +  V++ T+I G G +G G+ AL L++ M + G  PD+ T+L+ ++AC +
Sbjct: 570 ENVFDRMT-EKSTVTYTTMISGLGQHGFGDRALFLFYSMQDNGLKPDAVTFLAAISACNY 628

Query: 468 AGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE-GMGPNIW 526
           +GL ++GL ++  M E   +  + +H+ C+VDLLA+AG + +A      L E G    IW
Sbjct: 629 SGLVDEGLSLYRSM-ETFGLSATPQHHCCIVDLLAKAGRVEEAYDFVESLGEDGNFIAIW 687

Query: 527 RALLSGC 533
            +LL+ C
Sbjct: 688 GSLLASC 694



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 113/439 (25%), Positives = 213/439 (48%), Gaps = 30/439 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  S  ++ + + G ++ A  +FD   +KN+  W+ +I GY  NG   ++M  F  +M
Sbjct: 243 DLFVVSSAIAMFSEIGDVQSARMVFDHAAKKNIEVWNTMITGYVQNGQFSEAMDLFIQIM 302

Query: 64  LSGLLP-NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES------------------ 104
            S  +P +  T +  + AA+  Q+ +L + +HG ++K G+ S                  
Sbjct: 303 GSKGVPLDVVTFLSAITAASQSQDGKLGQQLHGYLMK-GMRSTLPVILGNALVVMYSRCG 361

Query: 105 ------DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                 DLF+ L    +VS N +V  F+ N    + +LL      SG V +AVT+  V+ 
Sbjct: 362 NVHAAFDLFDQLPEKDIVSWNTMVTAFVQNDFDFEGLLLVYQMHKSGFVADAVTLTAVLS 421

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM-ECKDVI 217
                G   + +  HG  I+ G I    + + +++MYS    +D A ++F      +D +
Sbjct: 422 AASNTGDLQIGKQSHGYLIRHG-IEGEGLESYLINMYSKSGHIDMAQRVFDGYGNDRDEV 480

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGD-LKRGKQLHAQ 276
           +W  M+  +        A+  FR M ++ +   +V L +++     +G+ ++ GKQ+H+ 
Sbjct: 481 TWNAMIAGYTQSGQPEQAVLAFRAMVEAGVEPTSVTLASVLPACEPVGEGVQAGKQIHSF 540

Query: 277 VVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
            +   L + + +  +++ MYSKCG++ ++ +VF+++TEKS V++T +ISG  Q+G    A
Sbjct: 541 ALRHSLDTNIFVGTALVDMYSKCGEITAAENVFDRMTEKSTVTYTTMISGLGQHGFGDRA 600

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
           L  F  M Q+     D++T ++ ++A      ++  L L+      G         C++ 
Sbjct: 601 LFLFYSM-QDNGLKPDAVTFLAAISACNYSGLVDEGLSLYRSMETFGLSATPQHHCCIVD 659

Query: 397 SYSKCGNVDLAYIVFEEMG 415
             +K G V+ AY   E +G
Sbjct: 660 LLAKAGRVEEAYDFVESLG 678



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 114/443 (25%), Positives = 218/443 (49%), Gaps = 33/443 (7%)

Query: 111 KNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVP---NAVTMLTVIRGCVALGSRA 167
           + P  + CN ++  ++   L   A+ L+     +   P   +  T    +  C       
Sbjct: 58  RPPPTLLCNVLLIAYVAGALPDHALGLYGVLNHAARPPPRSDHYTYSCALTACARSRRLR 117

Query: 168 LCELIHGLTIKLGLIL-DVSV-NNSVLDMY-SCLM----DLDAAIQIFREMECKDVISWT 220
           L   +H   ++    L D +V  NS+L++Y SC       +D   ++F     ++V+SW 
Sbjct: 118 LGRSVHAHLLRRARSLPDTAVLRNSLLNLYASCARYRHGGVDVVRRLFDATPKRNVVSWN 177

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++G +V      +AL++F  M +  I    V+ +N+    A   D      L+  ++  
Sbjct: 178 TLVGWYVKTGRPYEALEMFMRMLEDGIRPTPVSFVNVFPA-AASDDPSWPFFLYGMLIKH 236

Query: 281 GLQ--SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
           G++  S+L + +S IAM+S+ GD+ S+R VF+   +K++  W  +I+GYVQNG   EA++
Sbjct: 237 GVEYVSDLFVVSSAIAMFSEIGDVQSARMVFDHAAKKNIEVWNTMITGYVQNGQFSEAMD 296

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS-----VQNC 393
            FI++   K   +D +T +S +TA+ +    ++  QLHG   +      RS     + N 
Sbjct: 297 LFIQIMGSKGVPLDVVTFLSAITAASQSQDGKLGQQLHGYLMKG----MRSTLPVILGNA 352

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           L+  YS+CGNV  A+ +F+++   +D+VSWNT++  +  N      L L ++M ++G V 
Sbjct: 353 LVVMYSRCGNVHAAFDLFDQLP-EKDIVSWNTMVTAFVQNDFDFEGLLLVYQMHKSGFVA 411

Query: 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL 513
           D+ T  ++L+A  + G    G      +I         E Y  ++++ +++G +     +
Sbjct: 412 DAVTLTAVLSAASNTGDLQIGKQSHGYLIRHGIEGEGLESY--LINMYSKSGHID----M 465

Query: 514 AGKLLEGMGPN----IWRALLSG 532
           A ++ +G G +     W A+++G
Sbjct: 466 AQRVFDGYGNDRDEVTWNAMIAG 488



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 85/356 (23%), Positives = 168/356 (47%), Gaps = 27/356 (7%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+  Y + G +  A +LFD++PEK++VSW+ ++  +  N F  + +     M  SG + +
Sbjct: 353 LVVMYSRCGNVHAAFDLFDQLPEKDIVSWNTMVTAFVQNDFDFEGLLLVYQMHKSGFVAD 412

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------LFEG 109
           + T+  VL AA+   +L++ +  HG +++ G+E +                     +F+G
Sbjct: 413 AVTLTAVLSAASNTGDLQIGKQSHGYLIRHGIEGEGLESYLINMYSKSGHIDMAQRVFDG 472

Query: 110 LKNPY-LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
             N    V+ NA++AG+  +   +QAVL F     +G+ P +VT+ +V+  C  +G    
Sbjct: 473 YGNDRDEVTWNAMIAGYTQSGQPEQAVLAFRAMVEAGVEPTSVTLASVLPACEPVGEGVQ 532

Query: 169 C-ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
             + IH   ++  L  ++ V  +++DMYS   ++ AA  +F  M  K  +++T M+    
Sbjct: 533 AGKQIHSFALRHSLDTNIFVGTALVDMYSKCGEITAAENVFDRMTEKSTVTYTTMISGLG 592

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
              +   AL +F  M+ + +  D V  L  IS     G +  G  L+  +   GL +  +
Sbjct: 593 QHGFGDRALFLFYSMQDNGLKPDAVTFLAAISACNYSGLVDEGLSLYRSMETFGLSATPQ 652

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKS--LVSWTAIISGYVQNGCAREALNQFI 341
               I+ + +K G ++ +      + E    +  W ++++     G  ++ L  F+
Sbjct: 653 HHCCIVDLLAKAGRVEEAYDFVESLGEDGNFIAIWGSLLASCKAQG--KQELTAFV 706


>gi|222613253|gb|EEE51385.1| hypothetical protein OsJ_32436 [Oryza sativa Japonica Group]
          Length = 863

 Score =  243 bits (621), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 162/564 (28%), Positives = 270/564 (47%), Gaps = 28/564 (4%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           ID    S L+  Y K   + +A   F  +PE+N VSW   I G   N  + + ++ F  M
Sbjct: 182 IDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEM 241

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
              GL  +  +      + A +  L   R +H   +K    SD                 
Sbjct: 242 QRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSL 301

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                 F GL N  + + NA++ G +   L  +A+ LF F   S +  + V++  V   C
Sbjct: 302 TDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSAC 361

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
                    + +H L IK G  +D+ VNN+VLD+Y     L  A  IF+ M+ KD +SW 
Sbjct: 362 AETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWN 421

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++       +  D +  F EM +  +  D     +++   A L  L+ G  +H +V+  
Sbjct: 422 AIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKS 481

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           GL S+  ++++++ MY KCG +D ++ + ++I  + +VSW AI+SG+  N  + EA   F
Sbjct: 482 GLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFF 541

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            +M        D  T  ++L     LA +E+  Q+HG   +        + + L+  Y+K
Sbjct: 542 SEMLDMGLKP-DHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAK 600

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CG++  + +VFE++   RD VSWN +I GY ++G G  AL ++ +M +   VP+ +T+++
Sbjct: 601 CGDMPDSLLVFEKVE-KRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVA 659

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           +L AC H GL +DG   F+ M    K++P  EH+ C+VD+L R+    +A      +   
Sbjct: 660 VLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQ 719

Query: 521 MGPNIWRALLSGCVLHVGRFQDAE 544
               IW+ LLS C +     QD E
Sbjct: 720 ADAVIWKTLLSICKIR----QDVE 739



 Score =  198 bits (504), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 151/560 (26%), Positives = 259/560 (46%), Gaps = 30/560 (5%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  D  + + +L+ Y  +G I  A  LFD +P+ +VVSW+ ++ GY   G  ++S+  F 
Sbjct: 79  PRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFV 138

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL-------------- 106
            M   G+ P+  T   +L + + L+ L L   +H L VK GLE D+              
Sbjct: 139 EMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCR 198

Query: 107 --------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                   F G+     VS  A +AG + N+ + + + LF   +  GL  +  +  +  R
Sbjct: 199 SLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFR 258

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C A+        +H   IK     D  V  +++D+Y+    L  A + F  +    V +
Sbjct: 259 SCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVET 318

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
              MM   V      +A+ +F+ M +S I  D V+L  + S  A      +G+Q+H   +
Sbjct: 319 SNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAI 378

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
             G   ++ ++N+++ +Y KC  L  +  +F  + +K  VSW AII+   QNG   + + 
Sbjct: 379 KSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTIL 438

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
            F +M +      D  T  S+L A   L +LE  L +H    ++G      V + ++  Y
Sbjct: 439 HFNEMLRFGMKP-DDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMY 497

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
            KCG +D A  + + +G  + VVSWN I+ G+ +N   E A   + +M + G  PD  T+
Sbjct: 498 CKCGIIDEAQKLHDRIGG-QQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTF 556

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY--GCVVDLLARAGCLSDASGLAGK 516
            ++L+ C +      G  I  Q+I++  +    + Y    +VD+ A+ G + D S L  +
Sbjct: 557 ATVLDTCANLATIELGKQIHGQIIKQEML---DDEYISSTLVDMYAKCGDMPD-SLLVFE 612

Query: 517 LLEGMGPNIWRALLSGCVLH 536
            +E      W A++ G  LH
Sbjct: 613 KVEKRDFVSWNAMICGYALH 632



 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 132/489 (26%), Positives = 228/489 (46%), Gaps = 22/489 (4%)

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES----------------- 104
           M++SG +PN+F    +L   A       AR +   M +    S                 
Sbjct: 43  MVVSGFVPNAFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTA 102

Query: 105 -DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
             LF+G+ +P +VS NA+V+G+    +FQ++V LF      G+ P+  T   +++ C AL
Sbjct: 103 VALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSAL 162

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
              +L   +H L +K GL +DV   ++++DMY     LD A+  F  M  ++ +SW   +
Sbjct: 163 EELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAI 222

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
              V  E     L++F EM++  +     +  +     A +  L  G+QLHA  +     
Sbjct: 223 AGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFS 282

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
           S+  +  +I+ +Y+K   L  +R  F  +   ++ +  A++ G V+ G   EA+  F  M
Sbjct: 283 SDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFM 342

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
            +      D ++L  + +A  E        Q+H +A ++GF     V N ++  Y KC  
Sbjct: 343 IRSSI-RFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKA 401

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           +  AY++F+ M   +D VSWN II     NGH +  +  +++M   G  PD  TY S+L 
Sbjct: 402 LMEAYLIFQGMK-QKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLK 460

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
           AC        GL++ +++I+   +         VVD+  + G + +A  L  + + G   
Sbjct: 461 ACAALRSLEYGLMVHDKVIKSG-LGSDAFVASTVVDMYCKCGIIDEAQKLHDR-IGGQQV 518

Query: 524 NIWRALLSG 532
             W A+LSG
Sbjct: 519 VSWNAILSG 527



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 143/359 (39%), Gaps = 43/359 (11%)

Query: 146 LVPNAVTMLTVIRGCVALGSRALCELIHGLT--IKLGLILDVSVNNSVLDMYSCLMDLDA 203
           + P  VT   V + C   G  AL          +  G + +  V+N +L MY+       
Sbjct: 11  VAPARVTFSRVFQSCAQAGREALAAGRAAHARMVVSGFVPNAFVSNCLLQMYARCAGAAC 70

Query: 204 AIQIFREMECKDVISWTRMMGLFVDFEYAGD----------------------------- 234
           A ++F  M  +D +SW  M+     + +AGD                             
Sbjct: 71  ARRVFDAMPRRDTVSWNTML---TAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQR 127

Query: 235 -----ALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLS 289
                ++ +F EM +  +  D      L+   + L +L  G Q+HA  V  GL+ ++R  
Sbjct: 128 GMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTG 187

Query: 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD 349
           ++++ MY KC  LD +   F  + E++ VSW A I+G VQN      L  FI+M Q    
Sbjct: 188 SALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEM-QRLGL 246

Query: 350 SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYI 409
            V   +  S   +   ++ L    QLH  A +  F   R V   ++  Y+K  ++  A  
Sbjct: 247 GVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARR 306

Query: 410 VFEEMGFLRDVV-SWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
            F   G     V + N ++ G    G G  A+ L+  M  +    D  +   + +AC  
Sbjct: 307 AF--FGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAE 363



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 113/266 (42%), Gaps = 34/266 (12%)

Query: 276 QVVLGGLQSELRLSNSIIAM-------------------------------YSKCGDLDS 304
           ++V+ G      +SN ++ M                               YS  GD+ +
Sbjct: 42  RMVVSGFVPNAFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDIST 101

Query: 305 SRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASG 364
           + ++F+ + +  +VSW A++SGY Q G  +E+++ F++M +    S D  T   +L +  
Sbjct: 102 AVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGV-SPDRTTFAVLLKSCS 160

Query: 365 ELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWN 424
            L  L + +Q+H +A + G        + L+  Y KC ++D A   F  M   R+ VSW 
Sbjct: 161 ALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMP-ERNWVSWG 219

Query: 425 TIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEE 484
             I G   N      L L+ +M   G      +Y S   +C      N G  +    I +
Sbjct: 220 AAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAI-K 278

Query: 485 NKVKPSQEHYGCVVDLLARAGCLSDA 510
           NK    +     +VD+ A+A  L+DA
Sbjct: 279 NKFSSDRVVGTAIVDVYAKANSLTDA 304


>gi|14165320|gb|AAK55452.1|AC069300_7 putative PPR repeat protein [Oryza sativa Japonica Group]
 gi|31433484|gb|AAP54989.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 905

 Score =  243 bits (621), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 162/564 (28%), Positives = 270/564 (47%), Gaps = 28/564 (4%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           ID    S L+  Y K   + +A   F  +PE+N VSW   I G   N  + + ++ F  M
Sbjct: 224 IDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEM 283

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
              GL  +  +      + A +  L   R +H   +K    SD                 
Sbjct: 284 QRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSL 343

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                 F GL N  + + NA++ G +   L  +A+ LF F   S +  + V++  V   C
Sbjct: 344 TDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSAC 403

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
                    + +H L IK G  +D+ VNN+VLD+Y     L  A  IF+ M+ KD +SW 
Sbjct: 404 AETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWN 463

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++       +  D +  F EM +  +  D     +++   A L  L+ G  +H +V+  
Sbjct: 464 AIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKS 523

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           GL S+  ++++++ MY KCG +D ++ + ++I  + +VSW AI+SG+  N  + EA   F
Sbjct: 524 GLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFF 583

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            +M        D  T  ++L     LA +E+  Q+HG   +        + + L+  Y+K
Sbjct: 584 SEMLDMGLKP-DHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAK 642

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CG++  + +VFE++   RD VSWN +I GY ++G G  AL ++ +M +   VP+ +T+++
Sbjct: 643 CGDMPDSLLVFEKVE-KRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVA 701

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           +L AC H GL +DG   F+ M    K++P  EH+ C+VD+L R+    +A      +   
Sbjct: 702 VLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQ 761

Query: 521 MGPNIWRALLSGCVLHVGRFQDAE 544
               IW+ LLS C +     QD E
Sbjct: 762 ADAVIWKTLLSICKIR----QDVE 781



 Score =  198 bits (504), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 151/560 (26%), Positives = 259/560 (46%), Gaps = 30/560 (5%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  D  + + +L+ Y  +G I  A  LFD +P+ +VVSW+ ++ GY   G  ++S+  F 
Sbjct: 121 PRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFV 180

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL-------------- 106
            M   G+ P+  T   +L + + L+ L L   +H L VK GLE D+              
Sbjct: 181 EMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCR 240

Query: 107 --------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                   F G+     VS  A +AG + N+ + + + LF   +  GL  +  +  +  R
Sbjct: 241 SLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFR 300

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C A+        +H   IK     D  V  +++D+Y+    L  A + F  +    V +
Sbjct: 301 SCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVET 360

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
              MM   V      +A+ +F+ M +S I  D V+L  + S  A      +G+Q+H   +
Sbjct: 361 SNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAI 420

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
             G   ++ ++N+++ +Y KC  L  +  +F  + +K  VSW AII+   QNG   + + 
Sbjct: 421 KSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTIL 480

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
            F +M +      D  T  S+L A   L +LE  L +H    ++G      V + ++  Y
Sbjct: 481 HFNEMLRFGMKP-DDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMY 539

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
            KCG +D A  + + +G  + VVSWN I+ G+ +N   E A   + +M + G  PD  T+
Sbjct: 540 CKCGIIDEAQKLHDRIGG-QQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTF 598

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY--GCVVDLLARAGCLSDASGLAGK 516
            ++L+ C +      G  I  Q+I++  +    + Y    +VD+ A+ G + D S L  +
Sbjct: 599 ATVLDTCANLATIELGKQIHGQIIKQEML---DDEYISSTLVDMYAKCGDMPD-SLLVFE 654

Query: 517 LLEGMGPNIWRALLSGCVLH 536
            +E      W A++ G  LH
Sbjct: 655 KVEKRDFVSWNAMICGYALH 674



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 87/358 (24%), Positives = 142/358 (39%), Gaps = 43/358 (12%)

Query: 146 LVPNAVTMLTVIRGCVALGSRALCELIHGLT--IKLGLILDVSVNNSVLDMYSCLMDLDA 203
           + P  VT   V + C   G  AL          +  G +    V+N +L MY+       
Sbjct: 53  VAPARVTFSRVFQSCAQAGREALAAGRAAHARMVVSGFVPTAFVSNCLLQMYARCAGAAC 112

Query: 204 AIQIFREMECKDVISWTRMMGLFVDFEYAGD----------------------------- 234
           A ++F  M  +D +SW  M+     + +AGD                             
Sbjct: 113 ARRVFDAMPRRDTVSWNTML---TAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQR 169

Query: 235 -----ALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLS 289
                ++ +F EM +  +  D      L+   + L +L  G Q+HA  V  GL+ ++R  
Sbjct: 170 GMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTG 229

Query: 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD 349
           ++++ MY KC  LD +   F  + E++ VSW A I+G VQN      L  FI+M Q    
Sbjct: 230 SALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEM-QRLGL 288

Query: 350 SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYI 409
            V   +  S   +   ++ L    QLH  A +  F   R V   ++  Y+K  ++  A  
Sbjct: 289 GVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARR 348

Query: 410 VFEEMGFLRDVV-SWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
            F   G     V + N ++ G    G G  A+ L+  M  +    D  +   + +AC 
Sbjct: 349 AF--FGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACA 404



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 113/266 (42%), Gaps = 34/266 (12%)

Query: 276 QVVLGGLQSELRLSNSIIAM-------------------------------YSKCGDLDS 304
           ++V+ G      +SN ++ M                               YS  GD+ +
Sbjct: 84  RMVVSGFVPTAFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDIST 143

Query: 305 SRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASG 364
           + ++F+ + +  +VSW A++SGY Q G  +E+++ F++M +    S D  T   +L +  
Sbjct: 144 AVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGV-SPDRTTFAVLLKSCS 202

Query: 365 ELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWN 424
            L  L + +Q+H +A + G        + L+  Y KC ++D A   F  M   R+ VSW 
Sbjct: 203 ALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMP-ERNWVSWG 261

Query: 425 TIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEE 484
             I G   N      L L+ +M   G      +Y S   +C      N G  +    I +
Sbjct: 262 AAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAI-K 320

Query: 485 NKVKPSQEHYGCVVDLLARAGCLSDA 510
           NK    +     +VD+ A+A  L+DA
Sbjct: 321 NKFSSDRVVGTAIVDVYAKANSLTDA 346


>gi|297610920|ref|NP_001065364.2| Os10g0558600 [Oryza sativa Japonica Group]
 gi|255679629|dbj|BAF27201.2| Os10g0558600 [Oryza sativa Japonica Group]
          Length = 863

 Score =  243 bits (621), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 162/564 (28%), Positives = 270/564 (47%), Gaps = 28/564 (4%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           ID    S L+  Y K   + +A   F  +PE+N VSW   I G   N  + + ++ F  M
Sbjct: 182 IDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEM 241

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
              GL  +  +      + A +  L   R +H   +K    SD                 
Sbjct: 242 QRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSL 301

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                 F GL N  + + NA++ G +   L  +A+ LF F   S +  + V++  V   C
Sbjct: 302 TDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSAC 361

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
                    + +H L IK G  +D+ VNN+VLD+Y     L  A  IF+ M+ KD +SW 
Sbjct: 362 AETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWN 421

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++       +  D +  F EM +  +  D     +++   A L  L+ G  +H +V+  
Sbjct: 422 AIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKS 481

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           GL S+  ++++++ MY KCG +D ++ + ++I  + +VSW AI+SG+  N  + EA   F
Sbjct: 482 GLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFF 541

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            +M        D  T  ++L     LA +E+  Q+HG   +        + + L+  Y+K
Sbjct: 542 SEMLDMGLKP-DHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAK 600

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CG++  + +VFE++   RD VSWN +I GY ++G G  AL ++ +M +   VP+ +T+++
Sbjct: 601 CGDMPDSLLVFEKVE-KRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVA 659

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           +L AC H GL +DG   F+ M    K++P  EH+ C+VD+L R+    +A      +   
Sbjct: 660 VLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQ 719

Query: 521 MGPNIWRALLSGCVLHVGRFQDAE 544
               IW+ LLS C +     QD E
Sbjct: 720 ADAVIWKTLLSICKIR----QDVE 739



 Score =  198 bits (504), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 151/560 (26%), Positives = 259/560 (46%), Gaps = 30/560 (5%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  D  + + +L+ Y  +G I  A  LFD +P+ +VVSW+ ++ GY   G  ++S+  F 
Sbjct: 79  PRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFV 138

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL-------------- 106
            M   G+ P+  T   +L + + L+ L L   +H L VK GLE D+              
Sbjct: 139 EMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCR 198

Query: 107 --------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                   F G+     VS  A +AG + N+ + + + LF   +  GL  +  +  +  R
Sbjct: 199 SLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFR 258

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C A+        +H   IK     D  V  +++D+Y+    L  A + F  +    V +
Sbjct: 259 SCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVET 318

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
              MM   V      +A+ +F+ M +S I  D V+L  + S  A      +G+Q+H   +
Sbjct: 319 SNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAI 378

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
             G   ++ ++N+++ +Y KC  L  +  +F  + +K  VSW AII+   QNG   + + 
Sbjct: 379 KSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTIL 438

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
            F +M +      D  T  S+L A   L +LE  L +H    ++G      V + ++  Y
Sbjct: 439 HFNEMLRFGMKP-DDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMY 497

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
            KCG +D A  + + +G  + VVSWN I+ G+ +N   E A   + +M + G  PD  T+
Sbjct: 498 CKCGIIDEAQKLHDRIGG-QQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTF 556

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY--GCVVDLLARAGCLSDASGLAGK 516
            ++L+ C +      G  I  Q+I++  +    + Y    +VD+ A+ G + D S L  +
Sbjct: 557 ATVLDTCANLATIELGKQIHGQIIKQEML---DDEYISSTLVDMYAKCGDMPD-SLLVFE 612

Query: 517 LLEGMGPNIWRALLSGCVLH 536
            +E      W A++ G  LH
Sbjct: 613 KVEKRDFVSWNAMICGYALH 632



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 142/359 (39%), Gaps = 43/359 (11%)

Query: 146 LVPNAVTMLTVIRGCVALGSRALCELIHGLT--IKLGLILDVSVNNSVLDMYSCLMDLDA 203
           + P  VT   V + C   G  AL          +  G +    V+N +L MY+       
Sbjct: 11  VAPARVTFSRVFQSCAQAGREALAAGRAAHARMVVSGFVPTAFVSNCLLQMYARCAGAAC 70

Query: 204 AIQIFREMECKDVISWTRMMGLFVDFEYAGD----------------------------- 234
           A ++F  M  +D +SW  M+     + +AGD                             
Sbjct: 71  ARRVFDAMPRRDTVSWNTML---TAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQR 127

Query: 235 -----ALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLS 289
                ++ +F EM +  +  D      L+   + L +L  G Q+HA  V  GL+ ++R  
Sbjct: 128 GMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTG 187

Query: 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD 349
           ++++ MY KC  LD +   F  + E++ VSW A I+G VQN      L  FI+M Q    
Sbjct: 188 SALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEM-QRLGL 246

Query: 350 SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYI 409
            V   +  S   +   ++ L    QLH  A +  F   R V   ++  Y+K  ++  A  
Sbjct: 247 GVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARR 306

Query: 410 VFEEMGFLRDVV-SWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
            F   G     V + N ++ G    G G  A+ L+  M  +    D  +   + +AC  
Sbjct: 307 AF--FGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAE 363



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 113/266 (42%), Gaps = 34/266 (12%)

Query: 276 QVVLGGLQSELRLSNSIIAM-------------------------------YSKCGDLDS 304
           ++V+ G      +SN ++ M                               YS  GD+ +
Sbjct: 42  RMVVSGFVPTAFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDIST 101

Query: 305 SRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASG 364
           + ++F+ + +  +VSW A++SGY Q G  +E+++ F++M +    S D  T   +L +  
Sbjct: 102 AVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGV-SPDRTTFAVLLKSCS 160

Query: 365 ELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWN 424
            L  L + +Q+H +A + G        + L+  Y KC ++D A   F  M   R+ VSW 
Sbjct: 161 ALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMP-ERNWVSWG 219

Query: 425 TIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEE 484
             I G   N      L L+ +M   G      +Y S   +C      N G  +    I +
Sbjct: 220 AAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAI-K 278

Query: 485 NKVKPSQEHYGCVVDLLARAGCLSDA 510
           NK    +     +VD+ A+A  L+DA
Sbjct: 279 NKFSSDRVVGTAIVDVYAKANSLTDA 304


>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
 gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
          Length = 688

 Score =  243 bits (621), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 167/570 (29%), Positives = 272/570 (47%), Gaps = 98/570 (17%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+S Y + G++++A  +FDEIP                                   L N
Sbjct: 58  LVSTYARLGRLRDARRVFDEIP-----------------------------------LRN 82

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKL 130
           +F+   +L A A L   + AR+             LFE + +P   S NA+VA    +  
Sbjct: 83  TFSYNALLSAYARLGRPDEARA-------------LFEAIPDPDQCSYNAVVAALARHGR 129

Query: 131 FQ--QAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVN 188
                A+           V NA +  + +  C A       E +HGL  +     DV + 
Sbjct: 130 GHAADALRFLAAMHADDFVLNAYSFASALSACAAEKDSRTGEQVHGLVARSPHADDVHIR 189

Query: 189 NSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRII 248
           ++++DMY+     + A ++F  M  ++V+SW  ++  +      G+AL +F EM  +   
Sbjct: 190 SALVDMYAKCERPEDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFS 249

Query: 249 CDTVALLNLISVNAILGDLKRGKQLHAQVV-LGGLQSELRLSNSIIAMYSKCG------- 300
            D V L +++S  A L   + G+Q+HA +V    L+ ++ L+N+++ MY+KCG       
Sbjct: 250 PDEVTLSSVMSACAGLAADREGRQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARC 309

Query: 301 ------------------------DLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
                                   +++ ++ VF+Q+ EK++++W  +I+ Y QNG   EA
Sbjct: 310 IFDSMPSRSIVSETSILTGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEA 369

Query: 337 LNQFIKMRQEKTDSV--DSITLVSILTASGELAALEICLQLH------GIAFEAGFPRYR 388
           +  F+++   K DS+     T  ++L A G +A L++  Q H      G  F+ G     
Sbjct: 370 IRLFVQL---KRDSIWPTHYTYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGPESDV 426

Query: 389 SVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTE 448
            V N L+  Y K G++D    VFE M   RD VSWN +I GY  NG  + AL L+ +M  
Sbjct: 427 FVGNSLVDMYLKTGSIDDGAKVFERMA-ARDNVSWNAMIVGYAQNGRAKDALHLFERMLC 485

Query: 449 TGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLS 508
           + E PDS T + +L+ACGH+GL ++G   F+ M E++ + PS++HY C+VDLL RAG L 
Sbjct: 486 SNENPDSVTMIGVLSACGHSGLVDEGRRYFHSMTEDHGITPSRDHYTCMVDLLGRAGHLK 545

Query: 509 DASGLAGKLLEGMGPN--IWRALLSGCVLH 536
           +A  L   +   M P+  +W +LL  C LH
Sbjct: 546 EAEELINDM--PMEPDSVLWASLLGACRLH 573



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 111/493 (22%), Positives = 222/493 (45%), Gaps = 70/493 (14%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVI-----HGYSINGFHEKS 55
           P  + ++ + LLS Y + G+  EA  LF+ IP+ +  S++ V+     HG    G    +
Sbjct: 79  PLRNTFSYNALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHG---RGHAADA 135

Query: 56  MKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------- 105
           ++  + M     + N+++    L A A  ++      +HGL+ +     D          
Sbjct: 136 LRFLAAMHADDFVLNAYSFASALSACAAEKDSRTGEQVHGLVARSPHADDVHIRSALVDM 195

Query: 106 ------------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTM 153
                       +F+ +    +VS N+++  +  N    +A++LF     +G  P+ VT+
Sbjct: 196 YAKCERPEDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTL 255

Query: 154 LTVIRGCVALGSRALCELIHGLTIKLGLILDVSV-NNSVLDMYS---------CLMD--- 200
            +V+  C  L +      +H   +K   + D  V NN+++DMY+         C+ D   
Sbjct: 256 SSVMSACAGLAADREGRQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMP 315

Query: 201 -------------------LDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFRE 241
                              ++ A  +F +M  K+VI+W  ++  +       +A+++F +
Sbjct: 316 SRSIVSETSILTGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQ 375

Query: 242 MRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL------QSELRLSNSIIAM 295
           +++  I        N+++    + DL+ G+Q H  V+  G       +S++ + NS++ M
Sbjct: 376 LKRDSIWPTHYTYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDM 435

Query: 296 YSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSIT 355
           Y K G +D    VF ++  +  VSW A+I GY QNG A++AL+ F +M     ++ DS+T
Sbjct: 436 YLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLC-SNENPDSVT 494

Query: 356 LVSILTASGELAALEICLQ-LHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM 414
           ++ +L+A G    ++   +  H +  + G    R    C++    + G++  A  +  +M
Sbjct: 495 MIGVLSACGHSGLVDEGRRYFHSMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELINDM 554

Query: 415 GFLRDVVSWNTII 427
               D V W +++
Sbjct: 555 PMEPDSVLWASLL 567



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 119/259 (45%), Gaps = 52/259 (20%)

Query: 7   NSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSG 66
           + + +L+ Y KS  +++A+ +F ++ EKNV++W+++I  Y+ NG  E++++ F  +    
Sbjct: 321 SETSILTGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDS 380

Query: 67  LLPNSFTMVGVLVAAAGLQNLELARSIH------GLMVKFGLESDLFEG--LKNPYL--- 115
           + P  +T   VL A   + +L+L +  H      G    FG ESD+F G  L + YL   
Sbjct: 381 IWPTHYTYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTG 440

Query: 116 -----------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                            VS NA++ G+  N   + A+ LF     S   P++VTM+ V+ 
Sbjct: 441 SIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLS 500

Query: 159 GC-----VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMD-------LDAAIQ 206
            C     V  G R      H +T   G+           D Y+C++D       L  A +
Sbjct: 501 ACGHSGLVDEGRR----YFHSMTEDHGI-------TPSRDHYTCMVDLLGRAGHLKEAEE 549

Query: 207 IFREMECK-DVISWTRMMG 224
           +  +M  + D + W  ++G
Sbjct: 550 LINDMPMEPDSVLWASLLG 568



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 125/272 (45%), Gaps = 33/272 (12%)

Query: 266 DLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIIS 325
           +L   +  HA+++   +  E  L N++++ Y++ G L  +R VF++I  ++  S+ A++S
Sbjct: 32  NLSGARAAHARILKSPVAGETFLLNTLVSTYARLGRLRDARRVFDEIPLRNTFSYNALLS 91

Query: 326 GYVQNGCAREALNQFIKM----------------RQEKTDSVDSITLVS-------ILTA 362
            Y + G   EA   F  +                R  +  + D++  ++       +L A
Sbjct: 92  AYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAADALRFLAAMHADDFVLNA 151

Query: 363 SGELAALEICL---------QLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEE 413
               +AL  C          Q+HG+   +       +++ L+  Y+KC   + A  VF+ 
Sbjct: 152 YSFASALSACAAEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKCERPEDARRVFDA 211

Query: 414 MGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTND 473
           M   R+VVSWN++I  Y  NG    AL L+ +M   G  PD  T  S+++AC       +
Sbjct: 212 MP-ERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSACAGLAADRE 270

Query: 474 GLVIFNQMIEENKVKPSQEHYGCVVDLLARAG 505
           G  +   M++ ++++        +VD+ A+ G
Sbjct: 271 GRQVHAHMVKCDRLRDDMVLNNALVDMYAKCG 302


>gi|357520433|ref|XP_003630505.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524527|gb|AET04981.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 998

 Score =  243 bits (621), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 161/552 (29%), Positives = 269/552 (48%), Gaps = 25/552 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + L+  Y K   I +A  LFD +  K   +W+ +I GYS  G  + S+K F  M 
Sbjct: 175 DVYVCTSLIDFYTKHACIDDARLLFDGLQVKTSFTWTTIIAGYSKQGRSQVSLKLFDQMK 234

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
              + P+ + +  VL A   L+ LE  + IH  +++ G+  D                  
Sbjct: 235 EGHVCPDKYVLSSVLSACLMLKFLEGGKQIHCYVLRSGIVMDVSMVNGFIDFYFKCHKVQ 294

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               LF+ + +  +VS   ++AG + N   + A+ LF      G  P+A    +V+  C 
Sbjct: 295 LGRKLFDRMVDKNVVSWTTVIAGCMQNSFHRDALDLFVEMARMGWNPDAFGCTSVLNSCG 354

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
           +L +      +H   IK+ +  D  V N ++DMY+    L  A ++F  M   D++S+  
Sbjct: 355 SLVALEKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTDARKVFNLMAAIDLVSYNA 414

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+  +   +   +AL +FREMR S      +  ++L+ V+A L  L+   Q+H  ++  G
Sbjct: 415 MIEGYSRQDKLCEALDLFREMRLSLSSPTLLIFVSLLGVSASLYHLELSNQIHGLIIKYG 474

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           +  +    +++I +YSKC  +  +R VF +I +K +V WTA+ SGY Q     E+L  + 
Sbjct: 475 VSLDEFAGSALIDVYSKCSRVGDARLVFEEIQDKDIVVWTAMFSGYTQQSENEESLKLY- 533

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           K  Q      +  T  +++TA+  +A+L    Q H    + GF     V N L+  Y+K 
Sbjct: 534 KCLQMSRLKPNEFTFAAVITAASNIASLRHGQQFHNQVIKMGFDDDPFVANTLVDMYAKS 593

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G+++ A+  F    + +D   WN++I  Y  +G  E AL ++  M   G  P+  T++ +
Sbjct: 594 GSIEEAHKAFISTNW-KDTACWNSMIATYAQHGEAEKALQVFEDMIMEGLKPNYVTFVGV 652

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L+AC H GL + G   F+ M  +  ++P  EHY C+V LL RAG L +A     K+    
Sbjct: 653 LSACSHTGLLDLGFDHFDSM-SQFGIEPGIEHYVCMVSLLGRAGKLYEAKEFIEKMPIKQ 711

Query: 522 GPNIWRALLSGC 533
              +WR+LLS C
Sbjct: 712 AAVVWRSLLSAC 723



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 147/528 (27%), Positives = 249/528 (47%), Gaps = 36/528 (6%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS-GLLP 69
           LL  Y K   +  A  LFD +  KN+V+WS ++  Y+ +    +++  F   M S    P
Sbjct: 80  LLHAYSKLNLVNHANKLFDTMSHKNLVTWSSMVSMYTHHSHCLEALMLFVQFMRSCNEKP 139

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LF 107
           N + +  V+ A      L  A  IHGL+VK G   D                      LF
Sbjct: 140 NEYILASVVRACTQFGGLNPALQIHGLVVKGGYVQDVYVCTSLIDFYTKHACIDDARLLF 199

Query: 108 EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRA 167
           +GL+     +   I+AG+      Q ++ LF+  +   + P+   + +V+  C+ L    
Sbjct: 200 DGLQVKTSFTWTTIIAGYSKQGRSQVSLKLFDQMKEGHVCPDKYVLSSVLSACLMLKFLE 259

Query: 168 LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
             + IH   ++ G+++DVS+ N  +D Y     +    ++F  M  K+V+SWT ++   +
Sbjct: 260 GGKQIHCYVLRSGIVMDVSMVNGFIDFYFKCHKVQLGRKLFDRMVDKNVVSWTTVIAGCM 319

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
              +  DAL +F EM +     D     ++++    L  L++G+Q+HA  +   + ++  
Sbjct: 320 QNSFHRDALDLFVEMARMGWNPDAFGCTSVLNSCGSLVALEKGRQVHAYAIKVNIDNDDF 379

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
           + N +I MY+KC  L  +R VFN +    LVS+ A+I GY +     EAL+ F +MR   
Sbjct: 380 VKNGLIDMYAKCDSLTDARKVFNLMAAIDLVSYNAMIEGYSRQDKLCEALDLFREMRL-- 437

Query: 348 TDSVDSITL---VSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
             S+ S TL   VS+L  S  L  LE+  Q+HG+  + G        + LI  YSKC  V
Sbjct: 438 --SLSSPTLLIFVSLLGVSASLYHLELSNQIHGLIIKYGVSLDEFAGSALIDVYSKCSRV 495

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
             A +VFEE+   +D+V W  +  GY      E +L LY  +  +   P+  T+ +++ A
Sbjct: 496 GDARLVFEEIQD-KDIVVWTAMFSGYTQQSENEESLKLYKCLQMSRLKPNEFTFAAVITA 554

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHY--GCVVDLLARAGCLSDA 510
             +      G    NQ+I   K+    + +    +VD+ A++G + +A
Sbjct: 555 ASNIASLRHGQQFHNQVI---KMGFDDDPFVANTLVDMYAKSGSIEEA 599



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 128/483 (26%), Positives = 223/483 (46%), Gaps = 34/483 (7%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTM 74
           YFK  K++    LFD + +KNVVSW+ VI G   N FH  ++  F  M   G  P++F  
Sbjct: 287 YFKCHKVQLGRKLFDRMVDKNVVSWTTVIAGCMQNSFHRDALDLFVEMARMGWNPDAFGC 346

Query: 75  VGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY------------------ 114
             VL +   L  LE  R +H   +K  +++D F   GL + Y                  
Sbjct: 347 TSVLNSCGSLVALEKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTDARKVFNLMAA 406

Query: 115 --LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELI 172
             LVS NA++ G+       +A+ LF   R S   P  +  ++++    +L    L   I
Sbjct: 407 IDLVSYNAMIEGYSRQDKLCEALDLFREMRLSLSSPTLLIFVSLLGVSASLYHLELSNQI 466

Query: 173 HGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYA 232
           HGL IK G+ LD    ++++D+YS    +  A  +F E++ KD++ WT M   +      
Sbjct: 467 HGLIIKYGVSLDEFAGSALIDVYSKCSRVGDARLVFEEIQDKDIVVWTAMFSGYTQQSEN 526

Query: 233 GDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSI 292
            ++LK+++ ++ SR+  +      +I+  + +  L+ G+Q H QV+  G   +  ++N++
Sbjct: 527 EESLKLYKCLQMSRLKPNEFTFAAVITAASNIASLRHGQQFHNQVIKMGFDDDPFVANTL 586

Query: 293 IAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVD 352
           + MY+K G ++ +   F     K    W ++I+ Y Q+G A +AL  F  M  E     +
Sbjct: 587 VDMYAKSGSIEEAHKAFISTNWKDTACWNSMIATYAQHGEAEKALQVFEDMIMEGLKP-N 645

Query: 353 SITLVSILTASGELAALEICLQ----LHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
            +T V +L+A      L++       +     E G   Y     C++S   + G +  A 
Sbjct: 646 YVTFVGVLSACSHTGLLDLGFDHFDSMSQFGIEPGIEHYV----CMVSLLGRAGKLYEAK 701

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALY-HKMTETGEVPDSSTYLSILNACGH 467
              E+M   +  V W +++    V+G+ E  L  Y  +M  +    DS +Y+ + N    
Sbjct: 702 EFIEKMPIKQAAVVWRSLLSACRVSGNVE--LGTYAAEMAISCNPADSGSYVLLSNIFAS 759

Query: 468 AGL 470
            G+
Sbjct: 760 KGM 762



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 124/450 (27%), Positives = 229/450 (50%), Gaps = 22/450 (4%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLF-NFFRGSGLVPNAVTMLTVIRGCVALG 164
           LF+ + +  LV+ +++V+ + ++    +A++LF  F R     PN   + +V+R C   G
Sbjct: 96  LFDTMSHKNLVTWSSMVSMYTHHSHCLEALMLFVQFMRSCNEKPNEYILASVVRACTQFG 155

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
                  IHGL +K G + DV V  S++D Y+    +D A  +F  ++ K   +WT ++ 
Sbjct: 156 GLNPALQIHGLVVKGGYVQDVYVCTSLIDFYTKHACIDDARLLFDGLQVKTSFTWTTIIA 215

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            +     +  +LK+F +M++  +  D   L +++S   +L  L+ GKQ+H  V+  G+  
Sbjct: 216 GYSKQGRSQVSLKLFDQMKEGHVCPDKYVLSSVLSACLMLKFLEGGKQIHCYVLRSGIVM 275

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           ++ + N  I  Y KC  +   R +F+++ +K++VSWT +I+G +QN   R+AL+ F++M 
Sbjct: 276 DVSMVNGFIDFYFKCHKVQLGRKLFDRMVDKNVVSWTTVIAGCMQNSFHRDALDLFVEMA 335

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
           +   +  D+    S+L + G L ALE   Q+H  A +        V+N LI  Y+KC ++
Sbjct: 336 RMGWNP-DAFGCTSVLNSCGSLVALEKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSL 394

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
             A  VF  M  + D+VS+N +I GY        AL L+ +M  +   P    ++S+L  
Sbjct: 395 TDARKVFNLMAAI-DLVSYNAMIEGYSRQDKLCEALDLFREMRLSLSSPTLLIFVSLLGV 453

Query: 465 CG---HAGLTND--GLVIFNQMIEENKVKPSQEHYG--CVVDLLARAGCLSDASGLAGKL 517
                H  L+N   GL+I        K   S + +    ++D+ ++   + DA  L  + 
Sbjct: 454 SASLYHLELSNQIHGLII--------KYGVSLDEFAGSALIDVYSKCSRVGDAR-LVFEE 504

Query: 518 LEGMGPNIWRALLSGCVLHVGRFQDAEALR 547
           ++     +W A+ SG   +  + ++ E+L+
Sbjct: 505 IQDKDIVVWTAMFSG---YTQQSENEESLK 531



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 108/196 (55%), Gaps = 2/196 (1%)

Query: 271 KQLHAQVVLGGL-QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQ 329
           K++H+++V+ G  + ++ L N+++  YSK   ++ +  +F+ ++ K+LV+W++++S Y  
Sbjct: 58  KKIHSKIVVFGFHKHDIFLVNTLLHAYSKLNLVNHANKLFDTMSHKNLVTWSSMVSMYTH 117

Query: 330 NGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS 389
           +    EAL  F++  +   +  +   L S++ A  +   L   LQ+HG+  + G+ +   
Sbjct: 118 HSHCLEALMLFVQFMRSCNEKPNEYILASVVRACTQFGGLNPALQIHGLVVKGGYVQDVY 177

Query: 390 VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
           V   LI  Y+K   +D A ++F+ +  ++   +W TII GY   G  + +L L+ +M E 
Sbjct: 178 VCTSLIDFYTKHACIDDARLLFDGLQ-VKTSFTWTTIIAGYSKQGRSQVSLKLFDQMKEG 236

Query: 450 GEVPDSSTYLSILNAC 465
              PD     S+L+AC
Sbjct: 237 HVCPDKYVLSSVLSAC 252



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 89/184 (48%), Gaps = 22/184 (11%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  S L+  Y K  ++ +A  +F+EI +K++V W+ +  GY+    +E+S+K +  +
Sbjct: 477 LDEFAGSALIDVYSKCSRVGDARLVFEEIQDKDIVVWTAMFSGYTQQSENEESLKLYKCL 536

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--------------- 107
            +S L PN FT   V+ AA+ + +L   +  H  ++K G + D F               
Sbjct: 537 QMSRLKPNEFTFAAVITAASNIASLRHGQQFHNQVIKMGFDDDPFVANTLVDMYAKSGSI 596

Query: 108 -EGLK-----NPYLVSC-NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
            E  K     N    +C N+++A +  +   ++A+ +F      GL PN VT + V+  C
Sbjct: 597 EEAHKAFISTNWKDTACWNSMIATYAQHGEAEKALQVFEDMIMEGLKPNYVTFVGVLSAC 656

Query: 161 VALG 164
              G
Sbjct: 657 SHTG 660


>gi|326495056|dbj|BAJ85624.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 673

 Score =  243 bits (621), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 170/612 (27%), Positives = 296/612 (48%), Gaps = 62/612 (10%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           +KLLS Y   G +  A  + DE P  +  ++ + +  ++  G H  ++    H  +    
Sbjct: 59  TKLLSCYAALGDLASARRVLDETPRPDPYTYRVALGWHAAAGRHADALAL--HRGMRRRC 116

Query: 69  PNSFTMVGVLV----AAAGLQNLELARSIHGLMVKFG-------------------LES- 104
           P +   V +L     A+    +    R +H   VK G                   LE+ 
Sbjct: 117 PEAHDDVVLLSLALKASVRSADFRYGRRLHCNAVKAGGADGFVMNCLVDMYAKAGDLENA 176

Query: 105 -DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
             +F+ +    +VS  ++++G + N   ++ + LFN  R   ++P+  TM +V+  C  L
Sbjct: 177 RKVFDRILGRNVVSWTSMLSGCLQNGFAEEGLALFNEMREERVLPSEYTMASVLMACTML 236

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
           GS      +HG  IK G++ +  +  +VLDMY    +++ A ++F E+   D++ WT M+
Sbjct: 237 GSLHQGRWVHGSVIKHGMVFNPFITAAVLDMYVKCGEVEDARRLFDELGFVDLVLWTTMI 296

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
             +       DAL +F + +   I+ ++V +  ++S +A L +L  G+ +HA  V   + 
Sbjct: 297 VGYTQNGSPLDALLLFSDKKFVHIVPNSVTIATVLSASAQLRNLSLGRLIHAMSVKLLVI 356

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
               + N+++ MY+KC  L  +  +F +I+ K +V+W ++I+GYV+N    EAL  F +M
Sbjct: 357 ENDVVMNALVDMYAKCKALSEANGIFGRISNKDVVTWNSLIAGYVENDMGNEALMLFSQM 416

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
           R + + S D+I++V+ L+A   L  L I    H  A +  F     V   L++ Y+KC +
Sbjct: 417 RVQGS-SPDAISIVNALSACVCLGDLLIGKCFHTYAVKRAFLSNVYVNTALLNLYNKCAD 475

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           +  A  VF EM   R+ V+W  +I GYG+ G    ++ L +KM +    P+   + SIL+
Sbjct: 476 LPSAQRVFSEMSE-RNSVTWGAMIGGYGMQGDSAGSIDLLNKMLKDNIQPNEVVFTSILS 534

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
            C H G+ + G + F+ M +   + PS +HY C+VD+LARAG L +A     K+      
Sbjct: 535 TCSHTGMVSVGKMCFDSMAQYFNITPSMKHYACMVDVLARAGNLEEALEFIQKMPMPADI 594

Query: 524 NIWRALLSGCVLH---------------------------------VGRFQDAEALRSGS 550
           +IW A L GC LH                                  GR+  + A+R   
Sbjct: 595 SIWGAFLHGCKLHSRLEFGEEAINRMMVLHPDKPDFYVLMSNLYTSYGRWDKSLAIRRLM 654

Query: 551 QKKGIIKIPGIS 562
           Q++G++K+PG S
Sbjct: 655 QERGLVKLPGCS 666



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 117/389 (30%), Positives = 195/389 (50%), Gaps = 26/389 (6%)

Query: 156 VIRGCVALGS-RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
           ++  C  L S RAL    H   +  GL+  +     +L  Y+ L DL +A ++  E    
Sbjct: 29  LLPACATLPSLRAL----HARLLAHGLLRALRARTKLLSCYAALGDLASARRVLDETPRP 84

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIIC----DTVALLNL-ISVNAILGDLKR 269
           D  ++   +G         DAL + R MR+    C    D V LL+L +  +    D + 
Sbjct: 85  DPYTYRVALGWHAAAGRHADALALHRGMRRR---CPEAHDDVVLLSLALKASVRSADFRY 141

Query: 270 GKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQ 329
           G++LH   V  G  ++  + N ++ MY+K GDL+++R VF++I  +++VSWT+++SG +Q
Sbjct: 142 GRRLHCNAVKAG-GADGFVMNCLVDMYAKAGDLENARKVFDRILGRNVVSWTSMLSGCLQ 200

Query: 330 NGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS 389
           NG A E L  F +MR+E+    +  T+ S+L A   L +L     +HG   + G      
Sbjct: 201 NGFAEEGLALFNEMREERVLPSE-YTMASVLMACTMLGSLHQGRWVHGSVIKHGMVFNPF 259

Query: 390 VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
           +   ++  Y KCG V+ A  +F+E+GF+ D+V W T+I GY  NG    AL L+      
Sbjct: 260 ITAAVLDMYVKCGEVEDARRLFDELGFV-DLVLWTTMIVGYTQNGSPLDALLLFSDKKFV 318

Query: 450 GEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIE----ENKVKPSQEHYGCVVDLLARAG 505
             VP+S T  ++L+A       + G +I    ++    EN V         +VD+ A+  
Sbjct: 319 HIVPNSVTIATVLSASAQLRNLSLGRLIHAMSVKLLVIENDVV-----MNALVDMYAKCK 373

Query: 506 CLSDASGLAGKLLEGMGPNIWRALLSGCV 534
            LS+A+G+ G+ +       W +L++G V
Sbjct: 374 ALSEANGIFGR-ISNKDVVTWNSLIAGYV 401


>gi|356558692|ref|XP_003547637.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g17630-like [Glycine max]
          Length = 696

 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 163/561 (29%), Positives = 266/561 (47%), Gaps = 113/561 (20%)

Query: 114 YLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIH 173
           +L+  N+I+   +++   Q A+ L+   R  G +P+  T+  VIR C +LGS  LC ++H
Sbjct: 96  HLLLWNSIIRANVSHGYHQHALELYVEMRKLGFLPDGFTLPLVIRACSSLGSSYLCRIVH 155

Query: 174 GLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG--------- 224
              +++G    + V N ++ MY  L  ++ A Q+F  M  + ++SW  M+          
Sbjct: 156 CHALQMGFRNHLHVVNELVGMYGKLGRMEDARQLFDGMFVRSIVSWNTMVSGYALNRDSL 215

Query: 225 ----LFVDFEYAG----------------------DALKIFREMRKSRIICDTVALLNLI 258
               +F   E  G                      + L++F+ MR   I     AL  ++
Sbjct: 216 GASRVFKRMELEGLQPNSVTWTSLLSSHARCGLYDETLELFKVMRTRGIEIGAEALAVVL 275

Query: 259 SVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLV 318
           SV A + ++  GK++H  VV GG +  L + N++I  Y K   +  +  VF +I  K+LV
Sbjct: 276 SVCADMAEVDWGKEIHGYVVKGGYEDYLFVKNALIGTYGKHQHMGDAHKVFLEIKNKNLV 335

Query: 319 SWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDS------------------------- 353
           SW A+IS Y ++G   EA   F+ M  EK+DS D                          
Sbjct: 336 SWNALISSYAESGLCDEAYAAFLHM--EKSDSDDHSLVRPNVISWSAVISGFAYKGRGEK 393

Query: 354 -----------------ITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
                            +T+ S+L+   ELAAL +  +LHG A          V N LI+
Sbjct: 394 SLELFRQMQLAKVMANCVTISSVLSVCAELAALNLGRELHGYAIRNMMSDNILVGNGLIN 453

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
            Y KCG+    ++VF+ +   RD++SWN++I GYG++G GE AL  +++M      PD+ 
Sbjct: 454 MYMKCGDFKEGHLVFDNIEG-RDLISWNSLIGGYGMHGLGENALRTFNEMIRARMKPDNI 512

Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK 516
           T+++IL+AC HAGL   G  +F+QM+ E +++P+ EHY C+VDLL RAG L +A+ +   
Sbjct: 513 TFVAILSACSHAGLVAAGRNLFDQMVTEFRIEPNVEHYACMVDLLGRAGLLKEATDIVRN 572

Query: 517 LLEGMGPNIWRALLSGCVLHV---------------------------------GRFQDA 543
           +       +W ALL+ C ++                                  GR+ D+
Sbjct: 573 MPIEPNEYVWGALLNSCRMYKDMDIVEETASQILTLKSKITGSFMLLSNIYAANGRWDDS 632

Query: 544 EALRSGSQKKGIIKIPGISFL 564
             +R  ++ KG+ KIPG S++
Sbjct: 633 ARVRVSARTKGLKKIPGQSWI 653



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 109/460 (23%), Positives = 204/460 (44%), Gaps = 104/460 (22%)

Query: 5   PYNSSKLLSNYFKSGKIKEAENLFDEIPEK---NVVSWSIVIHGYSINGFHEKSMKAFSH 61
           P+ +++L++ Y +   +  A  +FD IP +   +++ W+ +I     +G+H+ +++ +  
Sbjct: 63  PFLAARLIAVYARFAFLSHARKVFDAIPLESLHHLLLWNSIIRANVSHGYHQHALELYVE 122

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIH-------------------GLMVKFGL 102
           M   G LP+ FT+  V+ A + L +  L R +H                   G+  K G 
Sbjct: 123 MRKLGFLPDGFTLPLVIRACSSLGSSYLCRIVHCHALQMGFRNHLHVVNELVGMYGKLGR 182

Query: 103 ESD---LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI-- 157
             D   LF+G+    +VS N +V+G+  N+    A  +F      GL PN+VT  +++  
Sbjct: 183 MEDARQLFDGMFVRSIVSWNTMVSGYALNRDSLGASRVFKRMELEGLQPNSVTWTSLLSS 242

Query: 158 -------------------RGCVALGSRALC---------------ELIHGLTIKLGLIL 183
                              RG + +G+ AL                + IHG  +K G   
Sbjct: 243 HARCGLYDETLELFKVMRTRG-IEIGAEALAVVLSVCADMAEVDWGKEIHGYVVKGGYED 301

Query: 184 DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD--------------- 228
            + V N+++  Y     +  A ++F E++ K+++SW  ++  + +               
Sbjct: 302 YLFVKNALIGTYGKHQHMGDAHKVFLEIKNKNLVSWNALISSYAESGLCDEAYAAFLHME 361

Query: 229 -----------------------FEYAG---DALKIFREMRKSRIICDTVALLNLISVNA 262
                                  F Y G    +L++FR+M+ ++++ + V + +++SV A
Sbjct: 362 KSDSDDHSLVRPNVISWSAVISGFAYKGRGEKSLELFRQMQLAKVMANCVTISSVLSVCA 421

Query: 263 ILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTA 322
            L  L  G++LH   +   +   + + N +I MY KCGD      VF+ I  + L+SW +
Sbjct: 422 ELAALNLGRELHGYAIRNMMSDNILVGNGLINMYMKCGDFKEGHLVFDNIEGRDLISWNS 481

Query: 323 IISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTA 362
           +I GY  +G    AL  F +M + +    D+IT V+IL+A
Sbjct: 482 LIGGYGMHGLGENALRTFNEMIRARMKP-DNITFVAILSA 520



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 118/218 (54%), Gaps = 5/218 (2%)

Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSL---VSWTAI 323
           L++ +QLH+Q+VL        L+  +IA+Y++   L  +R VF+ I  +SL   + W +I
Sbjct: 44  LQQARQLHSQLVLTTAHRLPFLAARLIAVYARFAFLSHARKVFDAIPLESLHHLLLWNSI 103

Query: 324 ISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG 383
           I   V +G  + AL  +++MR+      D  TL  ++ A   L +  +C  +H  A + G
Sbjct: 104 IRANVSHGYHQHALELYVEMRKLGFLP-DGFTLPLVIRACSSLGSSYLCRIVHCHALQMG 162

Query: 384 FPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALY 443
           F  +  V N L+  Y K G ++ A  +F+ M F+R +VSWNT++ GY +N     A  ++
Sbjct: 163 FRNHLHVVNELVGMYGKLGRMEDARQLFDGM-FVRSIVSWNTMVSGYALNRDSLGASRVF 221

Query: 444 HKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQM 481
            +M   G  P+S T+ S+L++    GL ++ L +F  M
Sbjct: 222 KRMELEGLQPNSVTWTSLLSSHARCGLYDETLELFKVM 259



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 83/365 (22%), Positives = 164/365 (44%), Gaps = 55/365 (15%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+  Y K   + +A  +F EI  KN+VSW+ +I  Y+ +G  +++  AF HM  S     
Sbjct: 309 LIGTYGKHQHMGDAHKVFLEIKNKNLVSWNALISSYAESGLCDEAYAAFLHMEKS----- 363

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKL 130
                                           +SD    L  P ++S +A+++GF     
Sbjct: 364 --------------------------------DSD-DHSLVRPNVISWSAVISGFAYKGR 390

Query: 131 FQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNS 190
            ++++ LF   + + ++ N VT+ +V+  C  L +  L   +HG  I+  +  ++ V N 
Sbjct: 391 GEKSLELFRQMQLAKVMANCVTISSVLSVCAELAALNLGRELHGYAIRNMMSDNILVGNG 450

Query: 191 VLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICD 250
           +++MY    D      +F  +E +D+ISW  ++G +       +AL+ F EM ++R+  D
Sbjct: 451 LINMYMKCGDFKEGHLVFDNIEGRDLISWNSLIGGYGMHGLGENALRTFNEMIRARMKPD 510

Query: 251 TVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSI------IAMYSKCGDL-D 303
            +  + ++S  +  G +  G+ L  Q+V     +E R+  ++      + +  + G L +
Sbjct: 511 NITFVAILSACSHAGLVAAGRNLFDQMV-----TEFRIEPNVEHYACMVDLLGRAGLLKE 565

Query: 304 SSRSVFNQITEKSLVSWTAIISG---YVQNGCAREALNQFIKMRQEKTDSVDSITLVSIL 360
           ++  V N   E +   W A+++    Y       E  +Q + ++ + T S   + L +I 
Sbjct: 566 ATDIVRNMPIEPNEYVWGALLNSCRMYKDMDIVEETASQILTLKSKITGSF--MLLSNIY 623

Query: 361 TASGE 365
            A+G 
Sbjct: 624 AANGR 628


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 173/625 (27%), Positives = 297/625 (47%), Gaps = 83/625 (13%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           +L  + K G++  A   F+EI  K+V  W+I++ GY+  G  +K++K  S M LSG+ P+
Sbjct: 231 ILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPD 290

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKN--PYLVSCNAIVAGFINN 128
             T   ++   A     E A        K+ LE     GLK+  P +VS  A++AG   N
Sbjct: 291 QVTWNAIISGYAQSGQFEEAS-------KYFLE---MGGLKDFKPNVVSWTALIAGSEQN 340

Query: 129 KLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLG-LILDVSV 187
               +A+ +F      G+ PN++T+ + +  C  L        IHG  IK+  L  D+ V
Sbjct: 341 GYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLV 400

Query: 188 NNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM------------------------ 223
            NS++D Y+    ++ A + F  ++  D++SW  M+                        
Sbjct: 401 GNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGI 460

Query: 224 --------GLFVDFEYAGD---ALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQ 272
                   GL   F   GD   AL+ F+ M    +  +T  +   ++    + +LK GK+
Sbjct: 461 EPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKE 520

Query: 273 LHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC 332
           +H  V+   ++    + +++I+MYS C  L+ + SVF++++ + +V W +IIS   Q+G 
Sbjct: 521 IHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGR 580

Query: 333 AREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN 392
           +  AL+   +M     + V+++T+VS L A  +LAAL    ++H      G      + N
Sbjct: 581 SVNALDLLREMNLSNVE-VNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILN 639

Query: 393 CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV 452
            LI  Y +CG++  +  +F+ M   RD+VSWN +I  YG++G G  A+ L+ +    G  
Sbjct: 640 SLIDMYGRCGSIQKSRRIFDLMP-QRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLK 698

Query: 453 PDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASG 512
           P+  T+ ++L+AC H+GL  +G   F  M  E  + P+ E Y C+VDLL+RAG  ++   
Sbjct: 699 PNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLE 758

Query: 513 LAGKLLEGMGPNIWRALLSGCVLH---------------------------------VGR 539
              K+       +W +LL  C +H                                  GR
Sbjct: 759 FIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGR 818

Query: 540 FQDAEALRSGSQKKGIIKIPGISFL 564
           ++DA  +R   +++G+ K PG S++
Sbjct: 819 WEDAAKIRCLMKERGVTKPPGCSWI 843



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 136/554 (24%), Positives = 239/554 (43%), Gaps = 74/554 (13%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIP-----EKNVVSWSIVIHGYSINGFHEKSMKA 58
           D    + ++S Y +SG+ +EA   F E+      + NVVSW+ +I G   NG+  +++  
Sbjct: 290 DQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSV 349

Query: 59  FSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKF-GLESDLFEG-------- 109
           F  M+L G+ PNS T+   + A   L  L   R IHG  +K   L+SDL  G        
Sbjct: 350 FRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYA 409

Query: 110 --------------LKNPYLVSCNAIVAGFINNKLFQQAVLL------------------ 137
                         +K   LVS NA++AG+      ++A+ L                  
Sbjct: 410 KCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNG 469

Query: 138 -----------------FNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLG 180
                            F      G+ PN  T+   +  C  + +  L + IHG  ++  
Sbjct: 470 LVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNH 529

Query: 181 LILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFR 240
           + L   V ++++ MYS    L+ A  +F E+  +DV+ W  ++        + +AL + R
Sbjct: 530 IELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLR 589

Query: 241 EMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCG 300
           EM  S +  +TV +++ +   + L  L++GK++H  ++  GL +   + NS+I MY +CG
Sbjct: 590 EMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCG 649

Query: 301 DLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSIL 360
            +  SR +F+ + ++ LVSW  +IS Y  +G   +A+N F + R       + IT  ++L
Sbjct: 650 SIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKP-NHITFTNLL 708

Query: 361 TASGELAALEICLQLHGI-----AFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMG 415
           +A      +E   +   +     A +    +Y     C++   S+ G  +      E+M 
Sbjct: 709 SACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYA----CMVDLLSRAGQFNETLEFIEKMP 764

Query: 416 FLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGL 475
           F  +   W +++    ++ + + A      + E  E   S  Y+ + N    AG   D  
Sbjct: 765 FEPNAAVWGSLLGACRIHCNPDLAEYAARYLFEL-EPQSSGNYVLMANIYSAAGRWEDAA 823

Query: 476 VIFNQMIEENKVKP 489
            I   M E    KP
Sbjct: 824 KIRCLMKERGVTKP 837



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 127/533 (23%), Positives = 230/533 (43%), Gaps = 90/533 (16%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           S+LL  Y ++G +++A  +FD++ E+NV SW+ ++  Y   G +E+++K F  M+  G+ 
Sbjct: 128 SRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVR 187

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------L 106
           P+ F    V  A + L+N  + + ++  M+  G E +                       
Sbjct: 188 PDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRF 247

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           FE ++   +   N +V+G+ +   F++A+   +  + SG+ P+ VT   +I G    G  
Sbjct: 248 FEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQ- 306

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
              E      +++G + D   N                           V+SWT ++   
Sbjct: 307 --FEEASKYFLEMGGLKDFKPN---------------------------VVSWTALIAGS 337

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV-LGGLQSE 285
               Y  +AL +FR+M    +  +++ + + +S    L  L+ G+++H   + +  L S+
Sbjct: 338 EQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSD 397

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGY------------------ 327
           L + NS++  Y+KC  ++ +R  F  I +  LVSW A+++GY                  
Sbjct: 398 LLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKF 457

Query: 328 -----------------VQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALE 370
                             Q G  + AL  F +M     D  ++ T+   L A G++  L+
Sbjct: 458 QGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDP-NTTTISGALAACGQVRNLK 516

Query: 371 ICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGY 430
           +  ++HG            V + LIS YS C ++++A  VF E+   RDVV WN+II   
Sbjct: 517 LGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELS-TRDVVVWNSIISAC 575

Query: 431 GVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIE 483
             +G    AL L  +M  +    ++ T +S L AC        G  I   +I 
Sbjct: 576 AQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIR 628



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 95/405 (23%), Positives = 176/405 (43%), Gaps = 42/405 (10%)

Query: 155 TVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
           ++++ C  L +  L   +H   +  G+ +   + + +L++Y     ++ A ++F +M  +
Sbjct: 94  SILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSER 153

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
           +V SWT +M ++       + +K+F  M    +  D      +    + L + + GK ++
Sbjct: 154 NVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVY 213

Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
             ++  G +    +  SI+ M+ KCG +D +R  F +I  K +  W  ++SGY   G  +
Sbjct: 214 DYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFK 273

Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
           +AL     M+                              L G+  +      +   N +
Sbjct: 274 KALKCISDMK------------------------------LSGVKPD------QVTWNAI 297

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRD----VVSWNTIIYGYGVNGHGETALALYHKMTETG 450
           IS Y++ G  + A   F EMG L+D    VVSW  +I G   NG+   AL+++ KM   G
Sbjct: 298 ISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEG 357

Query: 451 EVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
             P+S T  S ++AC +  L   G  I    I+  ++         +VD  A+   +  A
Sbjct: 358 VKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVA 417

Query: 511 SGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGI 555
               G +++      W A+L+G  L  G  ++A  L S  + +GI
Sbjct: 418 RRKFG-MIKQTDLVSWNAMLAGYALR-GSHEEAIELLSEMKFQGI 460


>gi|302759917|ref|XP_002963381.1| hypothetical protein SELMODRAFT_80412 [Selaginella moellendorffii]
 gi|300168649|gb|EFJ35252.1| hypothetical protein SELMODRAFT_80412 [Selaginella moellendorffii]
          Length = 860

 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 161/564 (28%), Positives = 269/564 (47%), Gaps = 54/564 (9%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           +LS + + G +     +FD +P + VV+W+ +I  Y+  G+   SM+A        + P+
Sbjct: 276 ILSLHARCGSLVGTREMFDRMPHRTVVTWTTMIAAYNQRGY---SMEALELYHCMDIEPD 332

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------------FE 108
              +  VL A + L+NLE  R++H  +     E  L                      F+
Sbjct: 333 DIALSNVLQACSRLKNLEQGRAVHSRIASRDFEPSLMVQTLLVDMYVKCGDLAEARRTFD 392

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
           G K   ++S  +++  + +    ++A+ +F+     G+ PN++T  TVI  C  L S   
Sbjct: 393 GFKARDVISWTSLITAYSHENFGREALEVFHSMELEGVEPNSITFCTVIDACSRLSSLLP 452

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
              +H   +  G I D  V N+++ MYS    +D A  +F  +  K   SW  M+     
Sbjct: 453 GRALHSRVVATGHISDEFVGNALVSMYSKFGRVDFARMVFDSIPVKRYPSWRVMLVALTQ 512

Query: 229 FEYAGDALKIFREMRKSRIICD------TVALLNLISVNAILGDLKRGKQLHAQVVLGGL 282
             ++ +AL+++     SRI  +       +    L+S  A L D+ R + +H  +     
Sbjct: 513 NGHSHEALEMY-----SRIHLEGFRPGSPIFSAALVSCTA-LEDVSRARAIHGVIKSSDF 566

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
             +L LSN ++ +Y+KCG+L+ +R VF+Q+TEK+ VSWT +I GY QNG   EAL  +  
Sbjct: 567 YPDLVLSNVLMNVYAKCGELEKARLVFDQMTEKNEVSWTTMIGGYAQNGRPAEALELYKA 626

Query: 343 MRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
           M  +     + I  V ++++  +L AL    ++H    +AG      +   L++ Y+KCG
Sbjct: 627 MDVQP----NFIAFVPVISSCADLGALVEGQRVHARLSDAGLQNNEVIVTALVNMYAKCG 682

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
            + LA   F+   +  D  +WN++   Y   GHG   L LY +M   G  P+  T LS+L
Sbjct: 683 KLGLAREFFDST-YCPDAGAWNSMATAYAQFGHGSQVLELYREMCLQGVQPNGITLLSVL 741

Query: 463 NACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSD-------ASGLAG 515
            AC H G+  +    F  M+ ++ + P+ EHY C+ DLL R+G L +       ASG +G
Sbjct: 742 VACSHMGMLEECEHRFECMVADHGIAPTSEHYSCMTDLLGRSGRLEEAEKVVKMASGESG 801

Query: 516 KLLEGMGP---NIWRALLSGCVLH 536
              E   P   + W + L  C  H
Sbjct: 802 S--EAASPVAVSAWMSFLGACKTH 823



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 128/497 (25%), Positives = 238/497 (47%), Gaps = 34/497 (6%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL-P 69
           L++ Y K G +++AE +F  I  KN  SW+ +I  Y+ NG+  ++++ F  MM  G + P
Sbjct: 171 LVTMYGKCGSLEDAERVFHGIRRKNAFSWTAMITAYAQNGYERRAIEVFGDMMSEGRVEP 230

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVK---FGLESD--------------------- 105
           +  T  GVL A + L +LE    IH L+ +    GLE D                     
Sbjct: 231 DPITYAGVLTACSTLGDLETGMRIHALIHRIYTLGLEYDDVLQDGILSLHARCGSLVGTR 290

Query: 106 -LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
            +F+ + +  +V+   ++A +       +A+ L++      + P+ + +  V++ C  L 
Sbjct: 291 EMFDRMPHRTVVTWTTMIAAYNQRGYSMEALELYHCM---DIEPDDIALSNVLQACSRLK 347

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
           +      +H           + V   ++DMY    DL  A + F   + +DVISWT ++ 
Sbjct: 348 NLEQGRAVHSRIASRDFEPSLMVQTLLVDMYVKCGDLAEARRTFDGFKARDVISWTSLIT 407

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            +    +  +AL++F  M    +  +++    +I   + L  L  G+ LH++VV  G  S
Sbjct: 408 AYSHENFGREALEVFHSMELEGVEPNSITFCTVIDACSRLSSLLPGRALHSRVVATGHIS 467

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           +  + N++++MYSK G +D +R VF+ I  K   SW  ++    QNG + EAL  + ++ 
Sbjct: 468 DEFVGNALVSMYSKFGRVDFARMVFDSIPVKRYPSWRVMLVALTQNGHSHEALEMYSRIH 527

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
            E       I   ++++ +  L  +     +HG+   + F     + N L++ Y+KCG +
Sbjct: 528 LEGFRPGSPIFSAALVSCTA-LEDVSRARAIHGVIKSSDFYPDLVLSNVLMNVYAKCGEL 586

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           + A +VF++M   ++ VSW T+I GY  NG    AL LY  M      P+   ++ ++++
Sbjct: 587 EKARLVFDQMT-EKNEVSWTTMIGGYAQNGRPAEALELYKAMDVQ---PNFIAFVPVISS 642

Query: 465 CGHAGLTNDGLVIFNQM 481
           C   G   +G  +  ++
Sbjct: 643 CADLGALVEGQRVHARL 659



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 131/491 (26%), Positives = 231/491 (47%), Gaps = 36/491 (7%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D    + LL+ Y K G ++E+  +F+ +  + V +W+ +I  Y  + F +++++AF  M
Sbjct: 63  VDTVLQNALLNLYAKCGDLEESRRIFEAMERRTVATWNTMITAYVQHDFFQEALEAFRRM 122

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIH------------------GLMVKFG--- 101
                 P+S T   VL A     +LE  ++IH                   L+  +G   
Sbjct: 123 ---DAPPSSITFTSVLGACCSPDDLETGKAIHRQIGGSSPQIQADEILQNSLVTMYGKCG 179

Query: 102 -LE--SDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLV-PNAVTMLTVI 157
            LE    +F G++     S  A++  +  N   ++A+ +F      G V P+ +T   V+
Sbjct: 180 SLEDAERVFHGIRRKNAFSWTAMITAYAQNGYERRAIEVFGDMMSEGRVEPDPITYAGVL 239

Query: 158 RGCVALGSRALCELIHGLTIK---LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
             C  LG       IH L  +   LGL  D  + + +L +++    L    ++F  M  +
Sbjct: 240 TACSTLGDLETGMRIHALIHRIYTLGLEYDDVLQDGILSLHARCGSLVGTREMFDRMPHR 299

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
            V++WT M+  +    Y+ +AL+++  M    I  D +AL N++   + L +L++G+ +H
Sbjct: 300 TVVTWTTMIAAYNQRGYSMEALELYHCM---DIEPDDIALSNVLQACSRLKNLEQGRAVH 356

Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
           +++     +  L +   ++ MY KCGDL  +R  F+    + ++SWT++I+ Y      R
Sbjct: 357 SRIASRDFEPSLMVQTLLVDMYVKCGDLAEARRTFDGFKARDVISWTSLITAYSHENFGR 416

Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
           EAL  F  M  E  +  +SIT  +++ A   L++L     LH      G      V N L
Sbjct: 417 EALEVFHSMELEGVEP-NSITFCTVIDACSRLSSLLPGRALHSRVVATGHISDEFVGNAL 475

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           +S YSK G VD A +VF+ +   R   SW  ++     NGH   AL +Y ++   G  P 
Sbjct: 476 VSMYSKFGRVDFARMVFDSIPVKR-YPSWRVMLVALTQNGHSHEALEMYSRIHLEGFRPG 534

Query: 455 SSTYLSILNAC 465
           S  + + L +C
Sbjct: 535 SPIFSAALVSC 545



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 123/455 (27%), Positives = 226/455 (49%), Gaps = 42/455 (9%)

Query: 42  VIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIH------- 94
           +I  Y+  G+H ++++ +  M   G+ PN  T   VL A AGL+++E  + +H       
Sbjct: 1   MISAYAQKGYHREALELYEEMDERGVDPNDKTFACVLSACAGLKDMERGKKVHRRIRESV 60

Query: 95  ------------GLMVKFG-LESD--LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFN 139
                        L  K G LE    +FE ++   + + N ++  ++ +  FQ+A+    
Sbjct: 61  ARVDTVLQNALLNLYAKCGDLEESRRIFEAMERRTVATWNTMITAYVQHDFFQEAL---E 117

Query: 140 FFRGSGLVPNAVTMLTVIRGCVALGS----RALCELIHGLTIKLGLILDVSVNNSVLDMY 195
            FR     P+++T  +V+  C +       +A+   I G + ++    D  + NS++ MY
Sbjct: 118 AFRRMDAPPSSITFTSVLGACCSPDDLETGKAIHRQIGGSSPQIQ--ADEILQNSLVTMY 175

Query: 196 SCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFRE-MRKSRIICDTVAL 254
                L+ A ++F  +  K+  SWT M+  +    Y   A+++F + M + R+  D +  
Sbjct: 176 GKCGSLEDAERVFHGIRRKNAFSWTAMITAYAQNGYERRAIEVFGDMMSEGRVEPDPITY 235

Query: 255 LNLISVNAILGDLKRGKQLHA---QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQ 311
             +++  + LGDL+ G ++HA   ++   GL+ +  L + I++++++CG L  +R +F++
Sbjct: 236 AGVLTACSTLGDLETGMRIHALIHRIYTLGLEYDDVLQDGILSLHARCGSLVGTREMFDR 295

Query: 312 ITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEI 371
           +  +++V+WT +I+ Y Q G + EAL  +  M  E     D I L ++L A   L  LE 
Sbjct: 296 MPHRTVVTWTTMIAAYNQRGYSMEALELYHCMDIEP----DDIALSNVLQACSRLKNLEQ 351

Query: 372 CLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGF-LRDVVSWNTIIYGY 430
              +H       F     VQ  L+  Y KCG++  A   F+  GF  RDV+SW ++I  Y
Sbjct: 352 GRAVHSRIASRDFEPSLMVQTLLVDMYVKCGDLAEARRTFD--GFKARDVISWTSLITAY 409

Query: 431 GVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
                G  AL ++H M   G  P+S T+ ++++AC
Sbjct: 410 SHENFGREALEVFHSMELEGVEPNSITFCTVIDAC 444



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 114/403 (28%), Positives = 195/403 (48%), Gaps = 29/403 (7%)

Query: 121 IVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLG 180
           +++ +      ++A+ L+      G+ PN  T   V+  C  L      + +H    +  
Sbjct: 1   MISAYAQKGYHREALELYEEMDERGVDPNDKTFACVLSACAGLKDMERGKKVHRRIRESV 60

Query: 181 LILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFR 240
             +D  + N++L++Y+   DL+ + +IF  ME + V +W  M+  +V  ++  +AL+ FR
Sbjct: 61  ARVDTVLQNALLNLYAKCGDLEESRRIFEAMERRTVATWNTMITAYVQHDFFQEALEAFR 120

Query: 241 EMRKSRIICDTVALLNLISVNAILG------DLKRGKQLHAQVVLGG----LQSELRLSN 290
            M          A  + I+  ++LG      DL+ GK +H Q+  GG    +Q++  L N
Sbjct: 121 RMD---------APPSSITFTSVLGACCSPDDLETGKAIHRQI--GGSSPQIQADEILQN 169

Query: 291 SIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDS 350
           S++ MY KCG L+ +  VF+ I  K+  SWTA+I+ Y QNG  R A+  F  M  E    
Sbjct: 170 SLVTMYGKCGSLEDAERVFHGIRRKNAFSWTAMITAYAQNGYERRAIEVFGDMMSEGRVE 229

Query: 351 VDSITLVSILTASGELAALEICLQLHGI---AFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
            D IT   +LTA   L  LE  +++H +    +  G      +Q+ ++S +++CG++   
Sbjct: 230 PDPITYAGVLTACSTLGDLETGMRIHALIHRIYTLGLEYDDVLQDGILSLHARCGSLVGT 289

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
             +F+ M   R VV+W T+I  Y   G+   AL LYH M      PD     ++L AC  
Sbjct: 290 REMFDRMPH-RTVVTWTTMIAAYNQRGYSMEALELYHCMDIE---PDDIALSNVLQACSR 345

Query: 468 AGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
                 G  + ++ I     +PS      +VD+  + G L++A
Sbjct: 346 LKNLEQGRAVHSR-IASRDFEPSLMVQTLLVDMYVKCGDLAEA 387


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 154/560 (27%), Positives = 281/560 (50%), Gaps = 46/560 (8%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + L+  Y K    K+   +FDE+ E+NVV+W+ +I GY+ N  +++ +  F  M   G  
Sbjct: 132 TSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQ 191

Query: 69  PNSFTMVGVL-------VAAAGLQNLELARSIHGLMVKFGLESD---------------- 105
           PNSFT    L       V   GLQ       +H ++VK GL+                  
Sbjct: 192 PNSFTFAAALGVLAEEGVGGRGLQ-------VHTVVVKNGLDKTIPVSNSLINLYLKCGN 244

Query: 106 ------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                 LF+  +   +V+ N++++G+  N L  +A+ +F   R + +  +  +  +VI+ 
Sbjct: 245 VRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKL 304

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYS-CLMDLDAAIQIFREMEC-KDVI 217
           C  L      E +H   +K G + D ++  +++  YS C   LDA +++F+E+ C  +V+
Sbjct: 305 CANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDA-LRLFKEIGCVGNVV 363

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           SWT M+  F+  +   +A+ +F EM++  +  +      +++   ++       ++HAQV
Sbjct: 364 SWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISP----SEVHAQV 419

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           V    +    +  +++  Y K G ++ +  VF+ I +K +V+W+A+++GY Q G    A+
Sbjct: 420 VKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAI 479

Query: 338 NQFIKMRQEKTDSVDSITLVSILTA-SGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
             F ++ +      +  T  SIL   +   A++    Q HG A ++       V + L++
Sbjct: 480 KMFGELTKGGIKP-NEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLT 538

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
            Y+K GN++ A  VF+     +D+VSWN++I GY  +G    AL ++ +M +     D  
Sbjct: 539 MYAKKGNIESAEEVFKRQR-EKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGV 597

Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK 516
           T++ +  AC HAGL  +G   F+ M+ + K+ P++EH  C+VDL +RAG L  A  +   
Sbjct: 598 TFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIEN 657

Query: 517 LLEGMGPNIWRALLSGCVLH 536
           +    G  IWR +L+ C +H
Sbjct: 658 MPNPAGSTIWRTILAACRVH 677



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 133/521 (25%), Positives = 243/521 (46%), Gaps = 58/521 (11%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ L++ Y K G +++A  LFD+   K+VV+W+ +I GY+ NG   +++  F  M L+ +
Sbjct: 232 SNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYV 291

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG--LESDLFEGLKNPY----------- 114
             +  +   V+   A L+ L     +H  +VK+G   + ++   L   Y           
Sbjct: 292 RLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALR 351

Query: 115 ----------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
                     +VS  A+++GF+ N   ++AV LF+  +  G+ PN  T   ++     + 
Sbjct: 352 LFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVIS 411

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
                  +H   +K       +V  ++LD Y  L  ++ A ++F  ++ KD+++W+ M+ 
Sbjct: 412 PSE----VHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLA 467

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISV----NAILGDLKRGKQLHAQVVLG 280
            +        A+K+F E+ K  I  +     ++++V    NA +G   +GKQ H   +  
Sbjct: 468 GYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMG---QGKQFHGFAIKS 524

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
            L S L +S++++ MY+K G+++S+  VF +  EK LVSW ++ISGY Q+G A +AL+ F
Sbjct: 525 RLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVF 584

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAF-EAGFPRYRSVQNCLISSYS 399
            +M++ K   +D +T + +  A      +E   +   I   +      +   +C++  YS
Sbjct: 585 KEMKKRKV-KMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYS 643

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP------ 453
           + G ++ A  V E M        W TI+           A    HK TE G +       
Sbjct: 644 RAGQLEKAMKVIENMPNPAGSTIWRTIL-----------AACRVHKKTELGRLAAEKIIA 692

Query: 454 ----DSSTYLSILNACGHAGLTNDGLVIFNQMIEEN-KVKP 489
               DS+ Y+ + N    +G   +   +   M E N K +P
Sbjct: 693 MKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEP 733



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 138/573 (24%), Positives = 276/573 (48%), Gaps = 38/573 (6%)

Query: 18  SGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGV 77
           S ++  A NLFD+ P ++  S+  ++ G+S +G  +++ + F ++   G+  +      V
Sbjct: 40  SSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSV 99

Query: 78  LVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFEGLKNPYL 115
           L  +A L +    R +H   +KFG   D                      +F+ +K   +
Sbjct: 100 LKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNV 159

Query: 116 VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA---LGSRALCELI 172
           V+   +++G+  N +  + + LF   +  G  PN+ T    + G +A   +G R L   +
Sbjct: 160 VTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAAL-GVLAEEGVGGRGL--QV 216

Query: 173 HGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYA 232
           H + +K GL   + V+NS++++Y    ++  A  +F + E K V++W  M+  +      
Sbjct: 217 HTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLD 276

Query: 233 GDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSI 292
            +AL +F  MR + +     +  ++I + A L +L+  +QLH  VV  G   +  +  ++
Sbjct: 277 LEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTAL 336

Query: 293 IAMYSKCGDLDSSRSVFNQI-TEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
           +  YSKC  +  +  +F +I    ++VSWTA+ISG++QN    EA++ F +M++ K    
Sbjct: 337 MVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKR-KGVRP 395

Query: 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVF 411
           +  T   ILTA   ++  E+    H    +  + R  +V   L+ +Y K G V+ A  VF
Sbjct: 396 NEFTYSVILTALPVISPSEV----HAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVF 451

Query: 412 EEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLT 471
             +   +D+V+W+ ++ GY   G  E A+ ++ ++T+ G  P+  T+ SILN C     +
Sbjct: 452 SGID-DKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNAS 510

Query: 472 NDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLS 531
                 F+    ++++  S      ++ + A+ G +  A  +  +  E    + W +++S
Sbjct: 511 MGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVS-WNSMIS 569

Query: 532 GCVLHVGRFQDAEALRSGSQKKGIIKIPGISFL 564
           G   H    +  +  +   ++K  +K+ G++F+
Sbjct: 570 GYAQHGQAMKALDVFKEMKKRK--VKMDGVTFI 600


>gi|296090396|emb|CBI40215.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 164/538 (30%), Positives = 279/538 (51%), Gaps = 34/538 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D  + + +++ Y ++GK+ EA  LFD    KN+ +W+I++ GY+  G  E++ + F  M 
Sbjct: 69  DVVSWNSMINGYSQNGKVDEARLLFDAFVGKNIRTWTILLTGYAKEGRIEEAREVFESMT 128

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVA 123
              ++  +  M+   V    L+N   AR              LF+ +    + S N++V 
Sbjct: 129 ERNVVSWN-AMISGYVQNGDLKN---ARK-------------LFDEMPEKNVASWNSVVT 171

Query: 124 GFINNKLFQQAVLLFNFFRGSGLVP--NAVTMLTVIRGCVALGSRALCELIHGLTIKLGL 181
           G+ +     +A  LF+       +P  N+V+ + +I G V +           + +K+  
Sbjct: 172 GYCHCYRMSEARELFD------QMPERNSVSWMVMISGYVHISDYWEA---WDVFVKMCR 222

Query: 182 ILDVSVNNSVLDMYSCLMDLDAAIQIF-REMECKDVISWTRMMGLFVDFEYAGDALKIFR 240
             +     +++  ++    LD AIQ++ R  E  +  SW  M+  FV  E + +AL++  
Sbjct: 223 TRNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTNSASWAAMIAGFVQNEESREALELLI 282

Query: 241 EMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCG 300
           E+ +S  +    +  + +S  A +GD++ G+ +H+  +  G Q    + N +I+MY+KCG
Sbjct: 283 ELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCG 342

Query: 301 DLDSSRSVFNQI--TEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVS 358
           +++    VF  I   ++ +VSWTAIIS YVQ G    AL+ F+ M        + +T+ S
Sbjct: 343 NVEDGSHVFRTIRMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKP-NQLTVTS 401

Query: 359 ILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLR 418
           +L+A G L A+++  Q H + F+ GF  +  V N LI+ Y KCG  D  + VFEEM    
Sbjct: 402 LLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCGYED-GFCVFEEMP-EH 459

Query: 419 DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIF 478
           D+++WN ++ G   NG G+ A+ ++ +M   G +PD  ++L +L AC HAGL ++G   F
Sbjct: 460 DLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHF 519

Query: 479 NQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
           N M ++  + P   HY C+VDLL RAG LS+A  L   +       IW ALL  C +H
Sbjct: 520 NSMTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEALLGACRIH 577



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 121/453 (26%), Positives = 211/453 (46%), Gaps = 24/453 (5%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM-------- 62
           ++S Y ++G +K A  LFDE+PEKNV SW+ V+ GY       ++ + F  M        
Sbjct: 138 MISGYVQNGDLKNARKLFDEMPEKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSW 197

Query: 63  --MLSGL--LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---LFEGL-KNPY 114
             M+SG   + + +    V V     +N     ++     + G   D   L+E + +   
Sbjct: 198 MVMISGYVHISDYWEAWDVFVKMCRTRNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTN 257

Query: 115 LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHG 174
             S  A++AGF+ N+  ++A+ L      SG VP+  +  + +  C  +G   +  +IH 
Sbjct: 258 SASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHS 317

Query: 175 LTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFR--EMECKDVISWTRMMGLFVDFEYA 232
           L IK G   +  V N ++ MY+   +++    +FR   M  +DV+SWT ++  +V   + 
Sbjct: 318 LAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRMPKRDVVSWTAIISAYVQAGHG 377

Query: 233 GDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSI 292
             AL +F +M    I  + + + +L+S    LG +K G+Q HA +   G  + L + NS+
Sbjct: 378 EVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSL 437

Query: 293 IAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVD 352
           I MY KCG  D    VF ++ E  L++W A++ G  QNG  +EA+  F +M  E     D
Sbjct: 438 ITMYFKCGYEDGF-CVFEEMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILP-D 495

Query: 353 SITLVSILTASGELAAL-EICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVF 411
            ++ + +L A      + E     + +  + G         C++    + G +  A  + 
Sbjct: 496 QMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALI 555

Query: 412 EEMGFLRDVVSWNTIIYGYGVNGHGETALALYH 444
           E M    D V W  ++    ++ + E    LYH
Sbjct: 556 ENMPVKPDSVIWEALLGACRIHRNNEL---LYH 585



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 125/272 (45%), Gaps = 22/272 (8%)

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
           Q+ L   N+ I    + G ++ +R VFN++ ++ +VSW ++I+GY QNG   EA   F  
Sbjct: 36  QTHLFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDA 95

Query: 343 MRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
              +        T   +LT   +   +E   ++    FE+   R     N +IS Y + G
Sbjct: 96  FVGKNIR-----TWTILLTGYAKEGRIEEAREV----FESMTERNVVSWNAMISGYVQNG 146

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
           ++  A  +F+EM   ++V SWN+++ GY        A  L+ +M E     +S +++ ++
Sbjct: 147 DLKNARKLFDEMP-EKNVASWNSVVTGYCHCYRMSEARELFDQMPER----NSVSWMVMI 201

Query: 463 NACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMG 522
           +   H     +   +F +M        ++  +  ++   A+ G L DA  L  ++ E   
Sbjct: 202 SGYVHISDYWEAWDVFVKMCRTR----NEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTN 257

Query: 523 PNIWRALLSGCVLHVGRFQDAEAL----RSGS 550
              W A+++G V +    +  E L    RSGS
Sbjct: 258 SASWAAMIAGFVQNEESREALELLIELHRSGS 289


>gi|302796685|ref|XP_002980104.1| hypothetical protein SELMODRAFT_111910 [Selaginella moellendorffii]
 gi|300152331|gb|EFJ18974.1| hypothetical protein SELMODRAFT_111910 [Selaginella moellendorffii]
          Length = 623

 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 156/560 (27%), Positives = 273/560 (48%), Gaps = 27/560 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + L+  Y + G + +A   F  I ++NV SW+I+I     NG   + ++    M 
Sbjct: 36  DTYLGNLLVQMYGRCGSLDDARAAFRGIHQRNVFSWTILISLLVQNGEASEGLELLKFMD 95

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPY------- 114
           L G   N  T + +L A +   +L L + IH  +   GLE+D+  G  L N Y       
Sbjct: 96  LEGTEANKITFISLLGACSVTGDLSLGKKIHERVRAKGLETDIITGNALLNMYTTCDSLD 155

Query: 115 -------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                        +VS   I++ + +     +A+ L+         P+AVT+++V+  C 
Sbjct: 156 EARLVFERMVFRDVVSWTIIISAYAHAGYPLEALQLYRRMEQEFSRPDAVTLISVLEACA 215

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
           +L +    + IH   +  G+  DV V  +V+  Y     +D A Q+F  +  KD++ W  
Sbjct: 216 SLRTLVEGKTIHERIVASGVETDVFVGTAVVSFYGKCEAVDDARQVFDRIMDKDIVCWNA 275

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+G +        A  ++ EM ++++  + V L+ L+   +    ++RG  LH +    G
Sbjct: 276 MIGAYAQNHCEEKAFALYLEMVENQMRPNDVTLITLLDSCSSTCKMERGSSLHREAAARG 335

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKS--LVSWTAIISGYVQNGCAREALNQ 339
             S   + N++I MY+KCG L+++  VF + T ++  +++W  +I    Q     EAL  
Sbjct: 336 YLSHTSVVNALINMYAKCGSLENATRVFIEATNRTTNVITWNTMIVANAQEDLNLEALQI 395

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           + +M QE   + D +T  ++L             ++H  +   G      VQN LI  Y 
Sbjct: 396 YHRMNQEGIKASD-VTYGTVLAVCANFGDFTTGREVHSRSLATGCCS-DVVQNSLICLYG 453

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
            CGN++ A   FE +   ++VVSW++I+  Y  NG  + A  L+  M + G +P+  T+ 
Sbjct: 454 GCGNLEAAQTAFESVAS-KNVVSWSSIVAAYARNGEEDRARNLFWTMNQDGVLPNIVTFT 512

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519
           S+L+AC HAGL ++G   F  M  ++ ++P+ EHYGC+V+LLA++G +  A+     +  
Sbjct: 513 SVLHACSHAGLADEGWSYFLSMQGDHHLEPTPEHYGCMVNLLAKSGRVKQAASFMSAMPV 572

Query: 520 GMGPNIWRALLSGCVLHVGR 539
               + WR+LL  C +H  +
Sbjct: 573 QPDASAWRSLLGACEVHTDK 592



 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 111/408 (27%), Positives = 200/408 (49%), Gaps = 24/408 (5%)

Query: 85  QNLELARSIHGLMVKFGLESDL----------------------FEGLKNPYLVSCNAIV 122
           ++L   R +H  M+  GL+ D                       F G+    + S   ++
Sbjct: 16  KSLADGRRVHSQMISNGLDGDTYLGNLLVQMYGRCGSLDDARAAFRGIHQRNVFSWTILI 75

Query: 123 AGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLI 182
           +  + N    + + L  F    G   N +T ++++  C   G  +L + IH      GL 
Sbjct: 76  SLLVQNGEASEGLELLKFMDLEGTEANKITFISLLGACSVTGDLSLGKKIHERVRAKGLE 135

Query: 183 LDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREM 242
            D+   N++L+MY+    LD A  +F  M  +DV+SWT ++  +    Y  +AL+++R M
Sbjct: 136 TDIITGNALLNMYTTCDSLDEARLVFERMVFRDVVSWTIIISAYAHAGYPLEALQLYRRM 195

Query: 243 RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDL 302
            +     D V L++++   A L  L  GK +H ++V  G+++++ +  ++++ Y KC  +
Sbjct: 196 EQEFSRPDAVTLISVLEACASLRTLVEGKTIHERIVASGVETDVFVGTAVVSFYGKCEAV 255

Query: 303 DSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTA 362
           D +R VF++I +K +V W A+I  Y QN C  +A   +++M + +    D +TL+++L +
Sbjct: 256 DDARQVFDRIMDKDIVCWNAMIGAYAQNHCEEKAFALYLEMVENQMRPND-VTLITLLDS 314

Query: 363 SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVF-EEMGFLRDVV 421
                 +E    LH  A   G+  + SV N LI+ Y+KCG+++ A  VF E      +V+
Sbjct: 315 CSSTCKMERGSSLHREAAARGYLSHTSVVNALINMYAKCGSLENATRVFIEATNRTTNVI 374

Query: 422 SWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAG 469
           +WNT+I           AL +YH+M + G      TY ++L  C + G
Sbjct: 375 TWNTMIVANAQEDLNLEALQIYHRMNQEGIKASDVTYGTVLAVCANFG 422



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 3/87 (3%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C D   +S L+  Y   G ++ A+  F+ +  KNVVSWS ++  Y+ NG  +++   F  
Sbjct: 440 CSDVVQNS-LICLYGGCGNLEAAQTAFESVASKNVVSWSSIVAAYARNGEEDRARNLFWT 498

Query: 62  MMLSGLLPNSFTMVGVLVAA--AGLQN 86
           M   G+LPN  T   VL A   AGL +
Sbjct: 499 MNQDGVLPNIVTFTSVLHACSHAGLAD 525


>gi|147804706|emb|CAN64870.1| hypothetical protein VITISV_041329 [Vitis vinifera]
          Length = 629

 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 146/485 (30%), Positives = 241/485 (49%), Gaps = 44/485 (9%)

Query: 119 NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIK 178
           NAI++GFI N   ++    +   R  G++P+  T    I+ C+ +      + IHGL  K
Sbjct: 108 NAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFPCAIKACLDVLE---IKKIHGLLFK 164

Query: 179 LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKI 238
            GL LDV + +++++ Y     ++ A   F E+  +DV+ W  M+  +         L+ 
Sbjct: 165 FGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLET 224

Query: 239 FREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSK 298
           FR M    ++     +   +SV A++GDL  G+ +H   +  G  S + +SNS+I MY K
Sbjct: 225 FRRMNDESVVPSRFTVTGXLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGK 284

Query: 299 CGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVS 358
           C  ++ +  +F  + EK + SW +I+S + Q G     L    +M        D +T+ +
Sbjct: 285 CKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQP-DLVTVTT 343

Query: 359 ILTASGELAALEICLQLHGIAFEAGFPRYRS------VQNCLISSYSKCGNVDLAYIVFE 412
           +L A   LAAL    ++HG    +G  +         ++N +I  Y+KCG++  A++VFE
Sbjct: 344 VLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFE 403

Query: 413 EMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTN 472
            M   +DV SWN +I GYG++G+G  AL ++ +M E    PD  T++ +L+AC HAG  +
Sbjct: 404 RMSN-KDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVS 462

Query: 473 DGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSG 532
            G     QM  +  V P+ EHY CV+D+L RAG L +A  LA  +     P +WRALL+ 
Sbjct: 463 QGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAA 522

Query: 533 CVLH---------------------------------VGRFQDAEALRSGSQKKGIIKIP 559
           C LH                                 VGR+++   +R   +++ + K P
Sbjct: 523 CRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKTP 582

Query: 560 GISFL 564
           G S++
Sbjct: 583 GCSWI 587



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 132/506 (26%), Positives = 233/506 (46%), Gaps = 44/506 (8%)

Query: 16  FKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMV 75
             S  +K  EN  D   E NV +++ +I G+  NGF E+  + +  M   G++P+ FT  
Sbjct: 86  LPSNTLKAGEN--DPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFP 143

Query: 76  GVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPYL------------------ 115
             + A   L  LE+ + IHGL+ KFGLE D+F G  L N YL                  
Sbjct: 144 CAIKAC--LDVLEI-KKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIR 200

Query: 116 --VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIH 173
             V  NA+V G+     F+  +  F       +VP+  T+   +     +G      +IH
Sbjct: 201 DVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGXLSVFAVMGDLNNGRIIH 260

Query: 174 GLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAG 233
           G  +K+G    V+V+NS++DMY     ++ A++IF  M  KD+ SW  ++ +    E  G
Sbjct: 261 GFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSV---HEQCG 317

Query: 234 D---ALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR--- 287
           D    L++   M  + I  D V +  ++   + L  L  G+++H  +++ GL  + +   
Sbjct: 318 DHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDID 377

Query: 288 ---LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
              L N++I MY+KCG +  +  VF +++ K + SW  +I GY  +G   EAL  F +M 
Sbjct: 378 DVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMC 437

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN--CLISSYSKCG 402
           + +    D +T V +L+A      +        +  ++ +    ++++  C+I    + G
Sbjct: 438 EVQLKP-DEVTFVGVLSACSHAGFVSQGRNFL-VQMKSKYDVAPTIEHYTCVIDMLGRAG 495

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
            +D AY +   M    + V W  ++    ++ H   A     ++ E  E     +Y+ + 
Sbjct: 496 QLDEAYELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFEL-EPEHCGSYVLMS 554

Query: 463 NACGHAGLTNDGLVIFNQMIEENKVK 488
           N  G  G   + L + + M ++N  K
Sbjct: 555 NVYGAVGRYEEVLEVRHTMRQQNVRK 580



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 169/359 (47%), Gaps = 40/359 (11%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  S L++ Y K G ++ A+  F+E+P ++VV W+ +++GY+  G  E  ++ F  M
Sbjct: 169 LDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRM 228

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES------------------ 104
               ++P+ FT+ G L   A + +L   R IHG  +K G +S                  
Sbjct: 229 NDESVVPSRFTVTGXLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCI 288

Query: 105 ----DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
               ++FE ++   + S N+IV+           + L +   G+G+ P+ VT+ TV+  C
Sbjct: 289 EDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPAC 348

Query: 161 VALGSRALCELIHGLTIKLGL------ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
             L +      IHG  I  GL      I DV + N+V+DMY+    +  A  +F  M  K
Sbjct: 349 SHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNK 408

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
           DV SW  M+  +    Y  +AL++F  M + ++  D V  + ++S  +  G + +G+   
Sbjct: 409 DVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFL 468

Query: 275 AQVVLGGLQSELRLSNSI------IAMYSKCGDLDSSRSV-FNQITEKSLVSWTAIISG 326
            Q     ++S+  ++ +I      I M  + G LD +  +      E + V W A+++ 
Sbjct: 469 VQ-----MKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAA 522


>gi|297838697|ref|XP_002887230.1| hypothetical protein ARALYDRAFT_476061 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297333071|gb|EFH63489.1| hypothetical protein ARALYDRAFT_476061 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1347

 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 152/551 (27%), Positives = 295/551 (53%), Gaps = 28/551 (5%)

Query: 9    SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
            + LL  Y ++G + +AE +FD +P +++V+WS ++     N    K+++ F  M+  G+ 
Sbjct: 698  TSLLCMYGQTGNLSDAEKVFDGMPVRDLVAWSTLVSSCLENCEVLKALRMFKCMVDDGVE 757

Query: 69   PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------L 106
            P++ TM+ V+   A L  L +ARS+HG + +   + D                      +
Sbjct: 758  PDAVTMISVVEGCAELGCLRIARSVHGQITRKMFDFDETLCNSLLTMYSKCGDLLSSEKI 817

Query: 107  FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
            FE +     VS  A+++ +   +  ++A+  F+    SG+ PN VT+ +++  C   G  
Sbjct: 818  FEKIAKKNAVSWTAMISSYNRGEFSEKALRSFSEMLKSGIEPNLVTLYSILSSCGLNGLI 877

Query: 167  ALCELIHGLTIKLGLILDV-SVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
               + +HG  I+  L  +  S++ +++++Y+    L     I   +  ++++ W   + L
Sbjct: 878  REGKSVHGFAIRRELDPNYESLSPALVELYAECGRLGDCETILHVVGDRNIVLWNSHISL 937

Query: 226  FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
            +       +AL +FR+M   RI  D+  L ++IS     G ++ GKQ+H  V+   +  E
Sbjct: 938  YAHRGMVIEALCLFRQMVTWRIKPDSFTLASIISACENTGLVRLGKQIHGHVIRTDVSDE 997

Query: 286  LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
              + NS+I MYSK G ++ + +VF+QI  +S+V+W +++ G+ QNG + EA+N F  M  
Sbjct: 998  F-VQNSVIDMYSKSGFVNLACTVFDQIKHRSIVTWNSMLCGFSQNGNSLEAINLFDYMYH 1056

Query: 346  EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
               + ++ +T ++++ A   + +LE    +H      G  +       LI  Y+KCG+++
Sbjct: 1057 SCLE-INKVTFLAVIQACSSIGSLEKGRWVHHKLIVCGI-KDLFTDTALIDMYAKCGDLN 1114

Query: 406  LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
             A  VF  M   R +VSW+++I  YG++G   +A++ +++M E+G  P+   ++++L+AC
Sbjct: 1115 TAETVFRAMSN-RSIVSWSSMINAYGMHGRIGSAISTFNQMVESGTKPNEVVFMNVLSAC 1173

Query: 466  GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI 525
            GH+G   +G   FN +++   V P+ EH+ C +DLL+R+G L +A     ++      ++
Sbjct: 1174 GHSGSVEEGKYYFN-LMKLFGVSPNSEHFACFIDLLSRSGDLKEAYRTIKEMPFLADASV 1232

Query: 526  WRALLSGCVLH 536
            W +L++GC +H
Sbjct: 1233 WGSLVNGCRIH 1243



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 133/503 (26%), Positives = 247/503 (49%), Gaps = 27/503 (5%)

Query: 4    DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
            DP   +KL+ +Y   G    +  +F+  P  +   + ++I         + ++  +  ++
Sbjct: 591  DPLPVTKLIESYAFMGSPDSSRLVFEAFPYPDSFMYGVLIKCNVWCHLLDAAIDLYHRLV 650

Query: 64   LSGLLPNSFTMVGVLVAAAG-LQNLELARSIHGLMVKFGLESD----------------- 105
                  + F    VL A AG  ++L + R +HG ++K G++ D                 
Sbjct: 651  SEKTQISKFVFPSVLRACAGSREHLSVGRKVHGRIIKSGVDDDAVIETSLLCMYGQTGNL 710

Query: 106  -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                 +F+G+    LV+ + +V+  + N    +A+ +F      G+ P+AVTM++V+ GC
Sbjct: 711  SDAEKVFDGMPVRDLVAWSTLVSSCLENCEVLKALRMFKCMVDDGVEPDAVTMISVVEGC 770

Query: 161  VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
              LG   +   +HG   +     D ++ NS+L MYS   DL ++ +IF ++  K+ +SWT
Sbjct: 771  AELGCLRIARSVHGQITRKMFDFDETLCNSLLTMYSKCGDLLSSEKIFEKIAKKNAVSWT 830

Query: 221  RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
             M+  +   E++  AL+ F EM KS I  + V L +++S   + G ++ GK +H   +  
Sbjct: 831  AMISSYNRGEFSEKALRSFSEMLKSGIEPNLVTLYSILSSCGLNGLIREGKSVHGFAIRR 890

Query: 281  GLQSELR-LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
             L      LS +++ +Y++CG L    ++ + + ++++V W + IS Y   G   EAL  
Sbjct: 891  ELDPNYESLSPALVELYAECGRLGDCETILHVVGDRNIVLWNSHISLYAHRGMVIEALCL 950

Query: 340  FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
            F +M   +    DS TL SI++A      + +  Q+HG            VQN +I  YS
Sbjct: 951  FRQMVTWRIKP-DSFTLASIISACENTGLVRLGKQIHGHVIRTDVSD-EFVQNSVIDMYS 1008

Query: 400  KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
            K G V+LA  VF+++   R +V+WN+++ G+  NG+   A+ L+  M  +    +  T+L
Sbjct: 1009 KSGFVNLACTVFDQIKH-RSIVTWNSMLCGFSQNGNSLEAINLFDYMYHSCLEINKVTFL 1067

Query: 460  SILNACGHAGLTNDGLVIFNQMI 482
            +++ AC   G    G  + +++I
Sbjct: 1068 AVIQACSSIGSLEKGRWVHHKLI 1090



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 117/411 (28%), Positives = 198/411 (48%), Gaps = 24/411 (5%)

Query: 106  LFEGLKNP------YLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
            +FE    P       L+ CN          L   A+ L++         +     +V+R 
Sbjct: 614  VFEAFPYPDSFMYGVLIKCNVWC------HLLDAAIDLYHRLVSEKTQISKFVFPSVLRA 667

Query: 160  CVALGSR---ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
            C   GSR   ++   +HG  IK G+  D  +  S+L MY    +L  A ++F  M  +D+
Sbjct: 668  CA--GSREHLSVGRKVHGRIIKSGVDDDAVIETSLLCMYGQTGNLSDAEKVFDGMPVRDL 725

Query: 217  ISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQ 276
            ++W+ ++   ++      AL++F+ M    +  D V +++++   A LG L+  + +H Q
Sbjct: 726  VAWSTLVSSCLENCEVLKALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARSVHGQ 785

Query: 277  VVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
            +       +  L NS++ MYSKCGDL SS  +F +I +K+ VSWTA+IS Y +   + +A
Sbjct: 786  ITRKMFDFDETLCNSLLTMYSKCGDLLSSEKIFEKIAKKNAVSWTAMISSYNRGEFSEKA 845

Query: 337  LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGF-PRYRSVQNCLI 395
            L  F +M +   +  + +TL SIL++ G    +     +HG A      P Y S+   L+
Sbjct: 846  LRSFSEMLKSGIEP-NLVTLYSILSSCGLNGLIREGKSVHGFAIRRELDPNYESLSPALV 904

Query: 396  SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
              Y++CG +     +   +G  R++V WN+ I  Y   G    AL L+ +M      PDS
Sbjct: 905  ELYAECGRLGDCETILHVVGD-RNIVLWNSHISLYAHRGMVIEALCLFRQMVTWRIKPDS 963

Query: 456  STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEH-YGCVVDLLARAG 505
             T  SI++AC + GL   G  I   +I   +   S E     V+D+ +++G
Sbjct: 964  FTLASIISACENTGLVRLGKQIHGHVI---RTDVSDEFVQNSVIDMYSKSG 1011


>gi|255565124|ref|XP_002523554.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223537116|gb|EEF38749.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 611

 Score =  243 bits (619), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 166/622 (26%), Positives = 293/622 (47%), Gaps = 100/622 (16%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           DP+  +KL+  Y     +  A+ LFD++P+ NV +W+ +   Y  +G ++K ++ +  M 
Sbjct: 29  DPFMLTKLIQMYADCDHLFSAQRLFDKMPQPNVYAWTAIFGFYLRHGMYDKCVQNYGFMK 88

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------- 106
            S +LP+++    VL A   L   E    IH  ++  G ES+L                 
Sbjct: 89  YSDVLPDNYVFPKVLRACTQLLWFEGGIWIHKDVIVCGCESNLQVCNSLIDMYVKCGNAR 148

Query: 107 -----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                FE ++   L S N++++G+++N L   AV L N  R  G  P+ VT         
Sbjct: 149 SARLVFEEMEERDLFSWNSMISGYVSNGLADLAVELLNCMRLDGFEPDVVTW-------- 200

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
                                      N+++D Y  +   D A ++ +++E  ++ISWT 
Sbjct: 201 ---------------------------NTLMDAYCQMGRFDEAWEVLKQIEQPNIISWTT 233

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIIC-DTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
           ++  +        +L++F++M    ++  D   L +++     +G L+ GK++H      
Sbjct: 234 LISSYSKIGEHDMSLRVFQDMIIREVVSPDLDCLCSVLVSCRHIGALRSGKEIHGYGTKM 293

Query: 281 GLQSELRLSN--SIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
              +    S   +++ MY+KCG +  + +VF  + +  +V+W A+I G+V+    ++A+ 
Sbjct: 294 ETNTVFYSSAGAALLTMYAKCGRIQDAINVFELMDKSDIVTWNAMILGFVELDLGKQAIE 353

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEA-GFPRYRSVQNCLISS 397
            F +M++    + D  T+ +IL     +  L+    +H    ++       +V N +I  
Sbjct: 354 CFREMQRMDIKN-DQTTISTILP----VCDLQYGNPIHAYVRKSITLSSVVTVWNAVIHM 408

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           Y KCG V  AY +F  M   +DVVSWNT+I G+G++GHG+ AL L  +M  +G  P+S+T
Sbjct: 409 YCKCGCVRSAYTIFCSMPN-KDVVSWNTMIGGFGMHGHGQAALKLLKEMILSGIFPNSTT 467

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL 517
           + S+L+AC H+GL ++G  +F  M E+  + P  EHY C+VD+LARAG  +DA     K+
Sbjct: 468 FTSVLSACSHSGLVDEGFRLFRSMTEDYSITPRMEHYSCIVDMLARAGQFADAVTFIHKM 527

Query: 518 LEGMGPNIWRALLSGCVLH---------------------------------VGRFQDAE 544
                 +IW ALL+ C  +                                  GR+ DA 
Sbjct: 528 PLEPDKSIWGALLAACRAYQNLDFGRLAAEQLIRMEPKCAGHYVTLSNIYARAGRWDDAG 587

Query: 545 ALRSGSQKKGIIKIPGISFLNS 566
            +R   + KG++K  G S + +
Sbjct: 588 RVRKEIEGKGLVKPSGQSLIET 609



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 102/392 (26%), Positives = 175/392 (44%), Gaps = 44/392 (11%)

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C  L S    + IH      G   D  +   ++ MY+    L +A ++F +M   +V +W
Sbjct: 5   CSNLKSLHAGKQIHQQITVSGWGKDPFMLTKLIQMYADCDHLFSAQRLFDKMPQPNVYAW 64

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           T + G ++        ++ +  M+ S ++ D      ++     L   + G  +H  V++
Sbjct: 65  TAIFGFYLRHGMYDKCVQNYGFMKYSDVLPDNYVFPKVLRACTQLLWFEGGIWIHKDVIV 124

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G +S L++ NS+I MY KCG+  S+R VF ++ E+ L SW ++ISGYV NG A  A   
Sbjct: 125 CGCESNLQVCNSLIDMYVKCGNARSARLVFEEMEERDLFSWNSMISGYVSNGLADLA--- 181

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
                            V +L           C++L G  FE     +    N L+ +Y 
Sbjct: 182 -----------------VELLN----------CMRLDG--FEPDVVTW----NTLMDAYC 208

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV-PDSSTY 458
           + G  D A+ V +++    +++SW T+I  Y   G  + +L ++  M     V PD    
Sbjct: 209 QMGRFDEAWEVLKQIE-QPNIISWTTLISSYSKIGEHDMSLRVFQDMIIREVVSPDLDCL 267

Query: 459 LSILNACGHAGLTNDGLVI--FNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK 516
            S+L +C H G    G  I  +   +E N V  S      ++ + A+ G + DA  +  +
Sbjct: 268 CSVLVSCRHIGALRSGKEIHGYGTKMETNTVFYSSAG-AALLTMYAKCGRIQDAINVF-E 325

Query: 517 LLEGMGPNIWRALLSGCV-LHVGRFQDAEALR 547
           L++      W A++ G V L +G+ Q  E  R
Sbjct: 326 LMDKSDIVTWNAMILGFVELDLGK-QAIECFR 356


>gi|302801528|ref|XP_002982520.1| hypothetical protein SELMODRAFT_116755 [Selaginella moellendorffii]
 gi|300149619|gb|EFJ16273.1| hypothetical protein SELMODRAFT_116755 [Selaginella moellendorffii]
          Length = 694

 Score =  243 bits (619), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 168/591 (28%), Positives = 282/591 (47%), Gaps = 64/591 (10%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ ++  Y K  +   A  +F E+ E++++SW+  I   + +G +  ++     M L G+
Sbjct: 49  ANAVMGMYRKCERADLAMAVFSEMRERDLISWNNAIAANAESGDYTFTLALLKSMQLEGM 108

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
            P+  T V  L A  G ++L   R IH L+++ G+E D                      
Sbjct: 109 APDKVTFVSALNACIGSRSLSNGRLIHALVLERGMEGDVVLGTALVTMYGRCGCLESARE 168

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLV-PNAVTMLTVIRGCVALG 164
           +F  +    +VS NA+VA    N  F +A+ LF       +V P  V+ +TV+       
Sbjct: 169 IFHRMPERNVVSWNAMVASCTLNAHFAEAIELFKRMVAVAMVEPTRVSFITVLNAVTTRE 228

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
           + A    IH +  +  L+  + V N+++ MY     +  A ++F  ME +D++SW  M+ 
Sbjct: 229 ALAEGRRIHEMIQERQLLSQIEVANALVTMYGRCGGVGDAERVFSAMERRDLVSWNAMIS 288

Query: 225 LFVD----------------------------------FEYAGD---ALKIFREMRKSRI 247
            +                                    +  AGD   AL IF+ M    I
Sbjct: 289 AYAQSGLACEVVNLFHRMRAERSMAARDVISWNTMITGYVQAGDPFSALSIFKRMLLEGI 348

Query: 248 ICDTVALLNLISVNAILGDLKRGKQLHAQVV--LGGLQSELRLSNSIIAMYSKCGDLDSS 305
             + V  ++L+SV      L++G+ +H  V+     L S+  ++ +I+ MY KCG+LD++
Sbjct: 349 RGNQVTFMSLLSVCDSRALLRQGETIHRCVIDQTPELSSDPIVAAAIVNMYGKCGELDTA 408

Query: 306 RSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGE 365
           R +F   + ++L SW ++IS Y  +G A +A +   +MR+E     D +T +++L A   
Sbjct: 409 RHLFEDTSHRNLASWNSMISAYALHGRAEQAFDLSERMRREGVLP-DRVTFITLLNACVA 467

Query: 366 LAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNT 425
             A+     +H    ++G  +   V N L++ YSKCGN+D A  +F  + + RDVVSWN 
Sbjct: 468 GGAVRQGKMIHARIIDSGLEKDTVVANALVNFYSKCGNLDTATSLFGALDY-RDVVSWNG 526

Query: 426 IIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEEN 485
           II G+  NGH   AL     M + G  PD+ T+L+IL+A  HAG    G   F  M  ++
Sbjct: 527 IIAGFAHNGHAREALKSMWLMQQDGVRPDAITFLTILSASSHAGFLRQGGDDFVSMAVDH 586

Query: 486 KVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
           +++   EHYGC++DLL RAG + +A      + +      W  LLS C +H
Sbjct: 587 ELERGVEHYGCMIDLLGRAGRIGEAEYFVSAMRDEDKEVSWMTLLSACEVH 637



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 149/573 (26%), Positives = 266/573 (46%), Gaps = 81/573 (14%)

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL-ESDL-------------- 106
           M  S L PN  T + +L A    + LE  + IH  +    L ESD+              
Sbjct: 1   MAGSSLDPNRVTFLALLEACDSPEFLEDGKQIHARVSALQLLESDVPVANAVMGMYRKCE 60

Query: 107 --------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                   F  ++   L+S N  +A    +  +   + L    +  G+ P+ VT ++ + 
Sbjct: 61  RADLAMAVFSEMRERDLISWNNAIAANAESGDYTFTLALLKSMQLEGMAPDKVTFVSALN 120

Query: 159 GCVALGSRALC--ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
            C+  GSR+L    LIH L ++ G+  DV +  +++ MY     L++A +IF  M  ++V
Sbjct: 121 ACI--GSRSLSNGRLIHALVLERGMEGDVVLGTALVTMYGRCGCLESAREIFHRMPERNV 178

Query: 217 ISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDT----VALLNLISVNAILGDLKRGKQ 272
           +SW  M+       +  +A+++F+ M    ++  T    + +LN ++    L +   G++
Sbjct: 179 VSWNAMVASCTLNAHFAEAIELFKRMVAVAMVEPTRVSFITVLNAVTTREALAE---GRR 235

Query: 273 LHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC 332
           +H  +    L S++ ++N+++ MY +CG +  +  VF+ +  + LVSW A+IS Y Q+G 
Sbjct: 236 IHEMIQERQLLSQIEVANALVTMYGRCGGVGDAERVFSAMERRDLVSWNAMISAYAQSGL 295

Query: 333 AREALNQFIKMRQEKTDSV-DSITLVSILT----ASGELAALEIC--LQLHGIA------ 379
           A E +N F +MR E++ +  D I+  +++T    A    +AL I   + L GI       
Sbjct: 296 ACEVVNLFHRMRAERSMAARDVISWNTMITGYVQAGDPFSALSIFKRMLLEGIRGNQVTF 355

Query: 380 --------FEAGFPRYRSVQNCLISS-----------------YSKCGNVDLAYIVFEEM 414
                     A   +  ++  C+I                   Y KCG +D A  +FE+ 
Sbjct: 356 MSLLSVCDSRALLRQGETIHRCVIDQTPELSSDPIVAAAIVNMYGKCGELDTARHLFEDT 415

Query: 415 GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDG 474
              R++ SWN++I  Y ++G  E A  L  +M   G +PD  T++++LNAC   G    G
Sbjct: 416 SH-RNLASWNSMISAYALHGRAEQAFDLSERMRREGVLPDRVTFITLLNACVAGGAVRQG 474

Query: 475 LVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCV 534
            +I  ++I+    K +      +V+  ++ G L  A+ L G  L+      W  +++G  
Sbjct: 475 KMIHARIIDSGLEKDTVV-ANALVNFYSKCGNLDTATSLFGA-LDYRDVVSWNGIIAG-F 531

Query: 535 LHVGRFQDAEALRSG--SQKKGIIKIPGISFLN 565
            H G  +  EAL+S    Q+ G ++   I+FL 
Sbjct: 532 AHNGHAR--EALKSMWLMQQDG-VRPDAITFLT 561



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 130/527 (24%), Positives = 234/527 (44%), Gaps = 74/527 (14%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + L++ Y + G ++ A  +F  +PE+NVVSW+ ++   ++N    ++++ F  M+   ++
Sbjct: 151 TALVTMYGRCGCLESAREIFHRMPERNVVSWNAMVASCTLNAHFAEAIELFKRMVAVAMV 210

Query: 69  -PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL--------------------- 106
            P   + + VL A    + L   R IH ++ +  L S +                     
Sbjct: 211 EPTRVSFITVLNAVTTREALAEGRRIHEMIQERQLLSQIEVANALVTMYGRCGGVGDAER 270

Query: 107 -FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGS--------------------- 144
            F  ++   LVS NA+++ +  + L  + V LF+  R                       
Sbjct: 271 VFSAMERRDLVSWNAMISAYAQSGLACEVVNLFHRMRAERSMAARDVISWNTMITGYVQA 330

Query: 145 ----------------GLVPNAVTMLTVIRGCVALGSRALC---ELIHGLTIKLG--LIL 183
                           G+  N VT ++++  C    SRAL    E IH   I     L  
Sbjct: 331 GDPFSALSIFKRMLLEGIRGNQVTFMSLLSVC---DSRALLRQGETIHRCVIDQTPELSS 387

Query: 184 DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMR 243
           D  V  ++++MY    +LD A  +F +   +++ SW  M+  +     A  A  +   MR
Sbjct: 388 DPIVAAAIVNMYGKCGELDTARHLFEDTSHRNLASWNSMISAYALHGRAEQAFDLSERMR 447

Query: 244 KSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLD 303
           +  ++ D V  + L++     G +++GK +HA+++  GL+ +  ++N+++  YSKCG+LD
Sbjct: 448 REGVLPDRVTFITLLNACVAGGAVRQGKMIHARIIDSGLEKDTVVANALVNFYSKCGNLD 507

Query: 304 SSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTAS 363
           ++ S+F  +  + +VSW  II+G+  NG AREAL     M+Q+     D+IT ++IL+AS
Sbjct: 508 TATSLFGALDYRDVVSWNGIIAGFAHNGHAREALKSMWLMQQDGVRP-DAITFLTILSAS 566

Query: 364 GELAAL-EICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVS 422
                L +       +A +    R      C+I    + G +  A      M      VS
Sbjct: 567 SHAGFLRQGGDDFVSMAVDHELERGVEHYGCMIDLLGRAGRIGEAEYFVSAMRDEDKEVS 626

Query: 423 WNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN---ACG 466
           W T++    V+G  E A  +   + E      SS Y+++ N    CG
Sbjct: 627 WMTLLSACEVHGDEERAKRVAGSIVEMNP-QHSSAYVALSNLYATCG 672



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 122/471 (25%), Positives = 215/471 (45%), Gaps = 56/471 (11%)

Query: 143 GSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLI-LDVSVNNSVLDMYSCLMDL 201
           GS L PN VT L ++  C +       + IH     L L+  DV V N+V+ MY      
Sbjct: 3   GSSLDPNRVTFLALLEACDSPEFLEDGKQIHARVSALQLLESDVPVANAVMGMYRKCERA 62

Query: 202 DAAIQIFREMECKDVISWTRMMGLFVDFEYAGD---ALKIFREMRKSRIICDTVALLNLI 258
           D A+ +F EM  +D+ISW   +    +   +GD    L + + M+   +  D V  ++  
Sbjct: 63  DLAMAVFSEMRERDLISWNNAIAANAE---SGDYTFTLALLKSMQLEGMAPDKVTFVS-- 117

Query: 259 SVNAILGD--LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKS 316
           ++NA +G   L  G+ +HA V+  G++ ++ L  +++ MY +CG L+S+R +F+++ E++
Sbjct: 118 ALNACIGSRSLSNGRLIHALVLERGMEGDVVLGTALVTMYGRCGCLESAREIFHRMPERN 177

Query: 317 LVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLH 376
           +VSW A+++    N    EA+  F +M          ++ +++L A     AL    ++H
Sbjct: 178 VVSWNAMVASCTLNAHFAEAIELFKRMVAVAMVEPTRVSFITVLNAVTTREALAEGRRIH 237

Query: 377 GIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMG--------------------- 415
            +  E        V N L++ Y +CG V  A  VF  M                      
Sbjct: 238 EMIQERQLLSQIEVANALVTMYGRCGGVGDAERVFSAMERRDLVSWNAMISAYAQSGLAC 297

Query: 416 ---------------FLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
                            RDV+SWNT+I GY   G   +AL+++ +M   G   +  T++S
Sbjct: 298 EVVNLFHRMRAERSMAARDVISWNTMITGYVQAGDPFSALSIFKRMLLEGIRGNQVTFMS 357

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY-GCVVDLLARAGCLSDASGLAGKLLE 519
           +L+ C    L   G  I   +I++     S       +V++  + G L  A  L     +
Sbjct: 358 LLSVCDSRALLRQGETIHRCVIDQTPELSSDPIVAAAIVNMYGKCGELDTARHL---FED 414

Query: 520 GMGPNI--WRALLSGCVLHVGRFQDAEALRSGSQKKGII--KIPGISFLNS 566
               N+  W +++S   LH GR + A  L    +++G++  ++  I+ LN+
Sbjct: 415 TSHRNLASWNSMISAYALH-GRAEQAFDLSERMRREGVLPDRVTFITLLNA 464



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/323 (23%), Positives = 138/323 (42%), Gaps = 62/323 (19%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           DP  ++ +++ Y K G++  A +LF++   +N+ SW+ +I  Y+++G  E++      M 
Sbjct: 388 DPIVAAAIVNMYGKCGELDTARHLFEDTSHRNLASWNSMISAYALHGRAEQAFDLSERMR 447

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
             G+LP+  T + +L A      +   + IH  ++  GLE D                  
Sbjct: 448 REGVLPDRVTFITLLNACVAGGAVRQGKMIHARIIDSGLEKDTVVANALVNFYSKCGNLD 507

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               LF  L    +VS N I+AGF +N   ++A+      +  G+ P+A+T LT++    
Sbjct: 508 TATSLFGALDYRDVVSWNGIIAGFAHNGHAREALKSMWLMQQDGVRPDAITFLTILSASS 567

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
             G      L  G    + + +D  +   V + Y C++DL                    
Sbjct: 568 HAGF-----LRQGGDDFVSMAVDHELERGV-EHYGCMIDLLG------------------ 603

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
             G   + EY   A+   R+  K       V+ + L+S   + GD +R K++   +V   
Sbjct: 604 RAGRIGEAEYFVSAM---RDEDKE------VSWMTLLSACEVHGDEERAKRVAGSIVEMN 654

Query: 282 LQ---SELRLSNSIIAMYSKCGD 301
            Q   + + LSN    +Y+ CGD
Sbjct: 655 PQHSSAYVALSN----LYATCGD 673


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  243 bits (619), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 139/450 (30%), Positives = 233/450 (51%), Gaps = 36/450 (8%)

Query: 153 MLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME 212
           M+++++ C   G  +L   +HG  +K  +    +  N++LDMY+    LD AI +F  M 
Sbjct: 1   MVSILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMS 60

Query: 213 CKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQ 272
            + V++WT ++  +     + +A+++F EM +  +  D   +  ++   A  G L+ GK 
Sbjct: 61  VRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKD 120

Query: 273 LHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC 332
           +H  +    +QS + + N+++ MY+KCG ++ + SVF ++  K ++SW  +I GY +N  
Sbjct: 121 VHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSL 180

Query: 333 AREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN 392
             EAL+ F  M  E     D  TL  IL A   LA+L+   ++HG     GF   + V N
Sbjct: 181 PNEALSLFGDMVLEMKP--DGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVAN 238

Query: 393 CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV 452
            L+  Y KCG   LA ++F +M   +D+++W  +I GYG++G G  A+  +++M + G  
Sbjct: 239 ALVDMYVKCGVPVLARLLF-DMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIE 297

Query: 453 PDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASG 512
           PD  +++SIL AC H+GL ++G   FN M +E  VKP  EHY C+VDLLAR+G L+ A  
Sbjct: 298 PDEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYK 357

Query: 513 LAGKLLEGMGPNIWRALLSGCVLH---------------------------------VGR 539
               +       IW ALLSGC +H                                   +
Sbjct: 358 FIKSMPIEPDATIWGALLSGCRIHHDVKLAEKVAEHVFELEPENTGYYVLLANTYAEAEK 417

Query: 540 FQDAEALRSGSQKKGIIKIPGISFLNSTSR 569
           +++ + LR    ++G+ K PG S++   S+
Sbjct: 418 WEEVKKLRQKIGRRGLKKNPGCSWIEVKSK 447



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 98/391 (25%), Positives = 181/391 (46%), Gaps = 27/391 (6%)

Query: 74  MVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFEGLK 111
           MV +L A A   ++ L R++HG  VK  +                         +F+ + 
Sbjct: 1   MVSILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMS 60

Query: 112 NPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCEL 171
              +V+  +++A +    L  +A+ LF+     G+ P+  T+ TV+  C   GS    + 
Sbjct: 61  VRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKD 120

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           +H    +  +  ++ V N+++DMY+    ++ A  +F EM  KD+ISW  M+G +     
Sbjct: 121 VHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSL 180

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
             +AL +F +M    +  D   L  ++   A L  L RGK++H  ++  G  S+ +++N+
Sbjct: 181 PNEALSLFGDM-VLEMKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVANA 239

Query: 292 IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
           ++ MY KCG    +R +F+ I  K L++WT +I+GY  +G    A+  F +MRQ   +  
Sbjct: 240 LVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEP- 298

Query: 352 DSITLVSILTASGELAALEICLQLHGI-AFEAGFPRYRSVQNCLISSYSKCGNVDLAYIV 410
           D ++ +SIL A      L+   +   +   E           C++   ++ G + +AY  
Sbjct: 299 DEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKF 358

Query: 411 FEEMGFLRDVVSWNTIIYGYGVNGHGETALA 441
            + M    D   W  ++ G  +  H +  LA
Sbjct: 359 IKSMPIEPDATIWGALLSGCRI--HHDVKLA 387



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 161/341 (47%), Gaps = 27/341 (7%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           LL  Y K G +  A  +FD +  + VV+W+ +I  Y+  G  +++++ F  M   G+ P+
Sbjct: 39  LLDMYAKCGVLDGAILVFDLMSVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPD 98

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY-------------- 114
            FT+  VL A A   +LE  + +H  + +  ++S++F    L + Y              
Sbjct: 99  IFTITTVLHACACNGSLENGKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFL 158

Query: 115 ------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
                 ++S N ++ G+  N L  +A+ LF       + P+  T+  ++  C +L S   
Sbjct: 159 EMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMVLE-MKPDGTTLACILPACASLASLDR 217

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMY-SCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
            + +HG  ++ G   D  V N+++DMY  C + + A + +F  +  KD+I+WT M+  + 
Sbjct: 218 GKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARL-LFDMIPTKDLITWTVMIAGYG 276

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG-KQLHAQVVLGGLQSEL 286
              +  +A+  F EMR++ I  D V+ ++++   +  G L  G +  +       ++ +L
Sbjct: 277 MHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKL 336

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISG 326
                I+ + ++ G L  +      +  E     W A++SG
Sbjct: 337 EHYACIVDLLARSGKLAMAYKFIKSMPIEPDATIWGALLSG 377



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 46/79 (58%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D   ++ L+  Y K G    A  LFD IP K++++W+++I GY ++GF   ++  F+ M 
Sbjct: 233 DQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMR 292

Query: 64  LSGLLPNSFTMVGVLVAAA 82
            +G+ P+  + + +L A +
Sbjct: 293 QAGIEPDEVSFISILYACS 311


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  243 bits (619), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 164/556 (29%), Positives = 276/556 (49%), Gaps = 38/556 (6%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + L+  Y K   + +   +F+ +P++NVV+W+ ++ GY  +G     M+ F  M   G+ 
Sbjct: 143 TSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVW 202

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFE-------------------- 108
           PNS T   VL   A    ++L R +H   VKFG  S +F                     
Sbjct: 203 PNSVTFASVLSVVASQGMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVV 262

Query: 109 --GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
             G++   +VS N ++AG + N    +A+ LF+  R S  +    T  TVI+ C  +   
Sbjct: 263 FCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIKLCANIKQL 322

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME-CKDVISWTRMMGL 225
            L   +H   +K G     +V  +++D YS    L  A+ IF  M   ++V+SWT M+  
Sbjct: 323 GLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMING 382

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
            +       A  +F  MR+  +  +      +++  A +  L    Q+HAQV+    +  
Sbjct: 383 CIQNGDVPLAAALFSRMREDGVAPNDFTYSTILT--ASVASLP--PQIHAQVIKTNYECT 438

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
             +  +++A YSK  + + + S+F  I +K +VSW+A+++ Y Q G +  A N FIKM  
Sbjct: 439 SIVGTALLASYSKLCNTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDSDGATNIFIKMTM 498

Query: 346 EKTDSVDSITLVSILTA-SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
                 +  T+ S++ A +   A +++  Q H I+ +        V + L+S Y++ G++
Sbjct: 499 HGLKP-NEFTISSVIDACASPTAGVDLGRQFHAISIKHRCHDALCVSSALVSMYARKGSI 557

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           + A  +FE     RD+VSWN+++ GY  +G+ + AL ++ +M   G   D  T+LS++  
Sbjct: 558 ESAQCIFERQTD-RDLVSWNSMLSGYAQHGYSQKALDVFRQMEAEGIEMDGVTFLSVIMG 616

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM--- 521
           C HAGL  +G   F+ M  +  + P+ EHY C+VDL +RAG L +A      L+EGM   
Sbjct: 617 CAHAGLVEEGQRYFDSMARDYGITPTMEHYACMVDLYSRAGKLDEAM----SLIEGMSFP 672

Query: 522 -GPNIWRALLSGCVLH 536
            GP +WR LL  C +H
Sbjct: 673 AGPMVWRTLLGACKVH 688



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 153/596 (25%), Positives = 274/596 (45%), Gaps = 43/596 (7%)

Query: 1   PCIDPYNSSKL-----LSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKS 55
           P + P + S L     L N         A   FDEIP +N +  ++  H     G   ++
Sbjct: 29  PELAPKSQSTLACSVPLENQTNLNDATGARQAFDEIPHRNTLDHALFDHAR--RGSVHQA 86

Query: 56  MKAF--SHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE---------- 103
           +  F   H    G +     +VGVL     + +  L + +HGL ++ G +          
Sbjct: 87  LDHFLDVHRCHGGRVGGG-ALVGVLKVCGSVPDRVLGKQLHGLCIRCGHDRGDVGVGTSL 145

Query: 104 -------------SDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNA 150
                          +FE +    +V+  +++ G+I +      + LF   R  G+ PN+
Sbjct: 146 VDMYMKWHSVVDGRKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVWPNS 205

Query: 151 VTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFRE 210
           VT  +V+    + G   L   +H  ++K G    V V NS+++MY+    ++ A  +F  
Sbjct: 206 VTFASVLSVVASQGMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCG 265

Query: 211 MECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG 270
           ME +D++SW  +M   V   +  +AL++F + R S  +        +I + A +  L   
Sbjct: 266 METRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIKLCANIKQLGLA 325

Query: 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISGYVQ 329
           +QLH+ V+  G  S   +  +++  YSK G L ++  +F  ++  +++VSWTA+I+G +Q
Sbjct: 326 RQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQ 385

Query: 330 NGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS 389
           NG    A   F +MR++     D  T  +ILTAS  +A+L    Q+H    +  +     
Sbjct: 386 NGDVPLAAALFSRMREDGVAPND-FTYSTILTAS--VASLPP--QIHAQVIKTNYECTSI 440

Query: 390 VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
           V   L++SYSK  N + A  +F +M   +DVVSW+ ++  Y   G  + A  ++ KMT  
Sbjct: 441 VGTALLASYSKLCNTEEALSIF-KMIDQKDVVSWSAMLTCYAQAGDSDGATNIFIKMTMH 499

Query: 450 GEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSD 509
           G  P+  T  S+++AC       D    F+ +  +++   +      +V + AR G +  
Sbjct: 500 GLKPNEFTISSVIDACASPTAGVDLGRQFHAISIKHRCHDALCVSSALVSMYARKGSIES 559

Query: 510 ASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFLN 565
           A  +  +  +      W ++LSG   H G  Q A  +    + +G I++ G++FL+
Sbjct: 560 AQCIFERQTD-RDLVSWNSMLSGYAQH-GYSQKALDVFRQMEAEG-IEMDGVTFLS 612



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 128/512 (25%), Positives = 242/512 (47%), Gaps = 32/512 (6%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C   +  + L++ Y K G ++EA  +F  +  +++VSW+ ++ G  +NG   ++++ F  
Sbjct: 237 CSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHD 296

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES--DLFEGLKNPY----- 114
              S  +    T   V+   A ++ L LAR +H  ++K G  S  ++   L + Y     
Sbjct: 297 SRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQ 356

Query: 115 ----------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                           +VS  A++ G I N     A  LF+  R  G+ PN  T  T++ 
Sbjct: 357 LGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILT 416

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
             VA    +L   IH   IK        V  ++L  YS L + + A+ IF+ ++ KDV+S
Sbjct: 417 ASVA----SLPPQIHAQVIKTNYECTSIVGTALLASYSKLCNTEEALSIFKMIDQKDVVS 472

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNA-ILGDLKRGKQLHAQV 277
           W+ M+  +     +  A  IF +M    +  +   + ++I   A     +  G+Q HA  
Sbjct: 473 WSAMLTCYAQAGDSDGATNIFIKMTMHGLKPNEFTISSVIDACASPTAGVDLGRQFHAIS 532

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           +       L +S+++++MY++ G ++S++ +F + T++ LVSW +++SGY Q+G +++AL
Sbjct: 533 IKHRCHDALCVSSALVSMYARKGSIESAQCIFERQTDRDLVSWNSMLSGYAQHGYSQKAL 592

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQ-LHGIAFEAGFPRYRSVQNCLIS 396
           + F +M  E  + +D +T +S++        +E   +    +A + G         C++ 
Sbjct: 593 DVFRQMEAEGIE-MDGVTFLSVIMGCAHAGLVEEGQRYFDSMARDYGITPTMEHYACMVD 651

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
            YS+ G +D A  + E M F    + W T++    V+ + E       K+    E  DS+
Sbjct: 652 LYSRAGKLDEAMSLIEGMSFPAGPMVWRTLLGACKVHKNVELGKLAAEKLLSL-EPFDSA 710

Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVK 488
           TY+ + N    AG   +   +  ++++  KVK
Sbjct: 711 TYVLLSNIYSAAGKWKEKDEV-RKLMDTKKVK 741


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  243 bits (619), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 170/677 (25%), Positives = 305/677 (45%), Gaps = 119/677 (17%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSG-LLP 69
           +L+ Y K G++ +A  LF  +P ++V SW+ ++ GY  +  +  S+++F  M  SG   P
Sbjct: 77  MLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMHRSGDSSP 136

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LF 107
           N+FT    + +   L    LA  + G++ KFG + D                      LF
Sbjct: 137 NAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLF 196

Query: 108 EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFF-------------------------- 141
             +K P +   N+++ G++       A+ LF+                            
Sbjct: 197 VRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALD 256

Query: 142 -----RGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYS 196
                +  G+  ++ T  + +  C  L S    + +H   I+    +D  V ++++++Y+
Sbjct: 257 MVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYA 316

Query: 197 CLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLN 256
                  A  +F  +  ++ ++WT ++  F+      +++++F +MR   +  D  AL  
Sbjct: 317 KCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALAT 376

Query: 257 LISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKS 316
           LIS      DL  G+QLH+  +  G    + +SNS+I+MY+KC +L S+ S+F  + EK 
Sbjct: 377 LISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKD 436

Query: 317 LVSWTAIISG-------------------------------YVQNGCAREALNQFIKMRQ 345
           +VSWT++I+                                Y+Q+G   + L  +  M  
Sbjct: 437 IVSWTSMITAHSQVGNIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLS 496

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
           EK    D +T V++     +L A ++  Q+ G   + G     SV N +I+ YSKCG + 
Sbjct: 497 EKDVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLILDTSVANAVITMYSKCGRIL 556

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            A  VF+ +  ++D+VSWN +I GY  +G G+ A+ ++  + + G  PD  +Y+++L+ C
Sbjct: 557 EARKVFDFLN-VKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGC 615

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI 525
            H+GL  +G   F+ M   + + P  EH+ C+VDLL RAG L++A  L  ++       +
Sbjct: 616 SHSGLVQEGKSYFDMMKRVHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDEMPMKPTAEV 675

Query: 526 WRALLSGCVLH---------------------------------VGRFQDAEALRSGSQK 552
           W ALLS C +H                                  G+  D+  +R   + 
Sbjct: 676 WGALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRD 735

Query: 553 KGIIKIPGISFLNSTSR 569
           KGI K PG S++   ++
Sbjct: 736 KGIKKNPGYSWMEVNNK 752



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 139/544 (25%), Positives = 246/544 (45%), Gaps = 69/544 (12%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P I   NS  +L  Y K+  +  A  LFD +PE++VVSW++++   S +G   +++    
Sbjct: 202 PTIFCRNS--MLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVV 259

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK--------------------- 99
            M   G+  +S T    L A A L +L   + +H  +++                     
Sbjct: 260 DMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCG 319

Query: 100 -FGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
            F     +F  L +   V+   ++AGF+ +  F ++V LFN  R   +  +   + T+I 
Sbjct: 320 CFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLIS 379

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
           GC +     L   +H L +K G I  V V+NS++ MY+   +L +A  IFR M  KD++S
Sbjct: 380 GCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVS 439

Query: 219 WTR-------------------------------MMGLFVDFEYAGDALKIFREMRKSR- 246
           WT                                M+G ++      D L+++  M   + 
Sbjct: 440 WTSMITAHSQVGNIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKD 499

Query: 247 IICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSR 306
           +  D V  + L    A LG  K G Q+  + V  GL  +  ++N++I MYSKCG +  +R
Sbjct: 500 VRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLILDTSVANAVITMYSKCGRILEAR 559

Query: 307 SVFNQITEKSLVSWTAIISGYVQNGCAREALNQF--IKMRQEKTDSVDSITLVSILTASG 364
            VF+ +  K +VSW A+I+GY Q+G  ++A+  F  I  R  K D +  + ++S  + SG
Sbjct: 560 KVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSG 619

Query: 365 EL----AALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDV 420
            +    +  ++  ++H I+   G   +    +C++    + G++  A  + +EM      
Sbjct: 620 LVQEGKSYFDMMKRVHNIS--PGLEHF----SCMVDLLGRAGHLTEAKDLIDEMPMKPTA 673

Query: 421 VSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQ 480
             W  ++    ++G+ E A  L  K     + PDS +Y+ +      AG ++D   I   
Sbjct: 674 EVWGALLSACKIHGNNELA-ELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKL 732

Query: 481 MIEE 484
           M ++
Sbjct: 733 MRDK 736



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 124/308 (40%), Gaps = 48/308 (15%)

Query: 273 LHAQVVLGGLQSELRL------------SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSW 320
           LHA +  G L    RL             N ++  Y K G L  +  +F ++  + + SW
Sbjct: 46  LHAYLSCGALPDARRLLLTDIAHPNVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASW 105

Query: 321 TAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAF 380
             ++SGY Q+     +L  F+ M +    S ++ T    + + G L    + LQL G+  
Sbjct: 106 NTLMSGYFQSQQYLASLESFVSMHRSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQ 165

Query: 381 EAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-------------GFL---------- 417
           + G      V   L+  + +CG VDLA  +F  +             G++          
Sbjct: 166 KFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALE 225

Query: 418 -------RDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGL 470
                  RDVVSWN ++     +G    AL +   M   G   DS+TY S L AC     
Sbjct: 226 LFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSS 285

Query: 471 TNDGLVIFNQMIEENKVKPSQEHY--GCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRA 528
              G  +  Q+I      P  + Y    +V+L A+ GC  +A G+   L +      W  
Sbjct: 286 LRWGKQLHAQVIRN---LPCIDPYVASALVELYAKCGCFKEAKGVFNSLHD-RNNVAWTV 341

Query: 529 LLSGCVLH 536
           L++G + H
Sbjct: 342 LIAGFLQH 349



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 137/315 (43%), Gaps = 36/315 (11%)

Query: 184 DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW-TRMMGLFVDFEYAGDALKIFREM 242
           +V  +N +L+ Y  L  L  A+++F  M  +DV SW T M G F   +Y   +L+ F  M
Sbjct: 70  NVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLA-SLESFVSM 128

Query: 243 RKS-RIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGD 301
            +S     +       +     LG+     QL   V   G Q +  ++ +++ M+ +CG 
Sbjct: 129 HRSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGT 188

Query: 302 LD-SSR------------------------------SVFNQITEKSLVSWTAIISGYVQN 330
           +D +SR                               +F+ + E+ +VSW  ++S   Q+
Sbjct: 189 VDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQS 248

Query: 331 GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV 390
           G  REAL+  + M Q K   +DS T  S LTA   L++L    QLH             V
Sbjct: 249 GRVREALDMVVDM-QSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYV 307

Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
            + L+  Y+KCG    A  VF  +   R+ V+W  +I G+  +G    ++ L+++M    
Sbjct: 308 ASALVELYAKCGCFKEAKGVFNSL-HDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAEL 366

Query: 451 EVPDSSTYLSILNAC 465
              D     ++++ C
Sbjct: 367 MTLDQFALATLISGC 381


>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
          Length = 684

 Score =  243 bits (619), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 173/632 (27%), Positives = 288/632 (45%), Gaps = 122/632 (19%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           ++L+  Y K   + +A  LFD +P++N  +W+ +I   + +GF +++ +           
Sbjct: 54  NRLIDVYGKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAAR----------- 102

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINN 128
                                                LF  +  P   S N++V+GF  +
Sbjct: 103 -------------------------------------LFGSMPEPDQCSWNSMVSGFAQH 125

Query: 129 KLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVN 188
             F++++  F        + N  +  + +  C  L    +   +H L  K     DV + 
Sbjct: 126 DRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMG 185

Query: 189 NSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRII 248
           ++++DMYS    +  A ++F  M  +++++W  ++  +     A +AL++F  M  S + 
Sbjct: 186 SALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLE 245

Query: 249 CDTVALLNLISVNAILGDLKRGKQLHAQVV-LGGLQSELRLSNSIIAMYSKCGDLDSSRS 307
            D V L +++S  A L  LK G Q+HA+VV     + +L L N+++ MY+KC  ++ +R 
Sbjct: 246 PDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARR 305

Query: 308 VFN-------------------------------QITEKSLVSWTAIISGYVQNGCAREA 336
           VF+                               ++T++++VSW A+I+GY QNG   EA
Sbjct: 306 VFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEA 365

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLH------GIAFEAGFPRYRSV 390
           L  F  +++E        T  ++L+A   LA L +  Q H      G  F++G      V
Sbjct: 366 LRLFRLLKRESIWPT-HYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFV 424

Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
            N LI  Y KCG+++    VFE+M   RD VSWN II GY  NG+G  AL ++ KM   G
Sbjct: 425 GNSLIDMYMKCGSIEDGSRVFEKMK-ERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCG 483

Query: 451 EVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
           E PD  T + +L AC HAGL  +G   F  M EE+ + P ++HY C+VDLL RAGCL++A
Sbjct: 484 EKPDHVTMIGVLCACSHAGLVEEGRHYFFSM-EEHGLIPLKDHYTCMVDLLGRAGCLNEA 542

Query: 511 SGLAGKLLEGMGPNIWRALLSGCVLH---------------------------------V 537
             L   +       +W +LL+ C +H                                 +
Sbjct: 543 KNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSNMYAEL 602

Query: 538 GRFQDAEALRSGSQKKGIIKIPGISFLNSTSR 569
           GR+ D   +R   +++G+ K PG S++   SR
Sbjct: 603 GRWGDVVRVRKLMRQQGVTKQPGCSWIEVESR 634



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/385 (26%), Positives = 173/385 (44%), Gaps = 67/385 (17%)

Query: 147 VPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMY---SCLMD--- 200
           +PN+     ++  C+   S     L+H   +     +++ + N ++D+Y    CL D   
Sbjct: 12  LPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARK 71

Query: 201 -------------------------LDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDA 235
                                    LD A ++F  M   D  SW  M+  F   +   ++
Sbjct: 72  LFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEES 131

Query: 236 LKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAM 295
           L+ F +M +   + +  +  + +S  A L DL  G Q+HA V      +++ + +++I M
Sbjct: 132 LEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDM 191

Query: 296 YSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSIT 355
           YSKCG +  +  VF+ + E++LV+W ++I+ Y QNG A EAL  F++M     +  D +T
Sbjct: 192 YSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEP-DEVT 250

Query: 356 LVSILTASGELAALEICLQLHGIAFEAGFPRYRS---VQNCLISSYSKCGNVDLAYIVFE 412
           L S+++A   L AL+  LQ+H    +    ++R    + N L+  Y+KC  V+ A  VF+
Sbjct: 251 LASVVSACASLCALKEGLQIHARVVKTN--KFRDDLVLGNALVDMYAKCSKVNEARRVFD 308

Query: 413 EMGFL------------------------------RDVVSWNTIIYGYGVNGHGETALAL 442
            M                                 R+VVSWN +I GY  NG  E AL L
Sbjct: 309 RMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRL 368

Query: 443 YHKMTETGEVPDSSTYLSILNACGH 467
           +  +      P   T+ ++L+AC +
Sbjct: 369 FRLLKRESIWPTHYTFGNLLSACAN 393



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 137/274 (50%), Gaps = 34/274 (12%)

Query: 269 RGKQL-HAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK------SLV--- 318
           RG +L HA++++     E+ + N +I +Y KC  LD +R +F+++ ++      SL+   
Sbjct: 32  RGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRMPQRNTFTWNSLISVL 91

Query: 319 ----------------------SWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITL 356
                                 SW +++SG+ Q+    E+L  F+KM +E    ++  + 
Sbjct: 92  TKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDF-LLNEYSF 150

Query: 357 VSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGF 416
            S L+A   L  L +  Q+H +  ++ +     + + LI  YSKCG+V  A  VF  M  
Sbjct: 151 GSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGM-I 209

Query: 417 LRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLV 476
            R++V+WN++I  Y  NG    AL ++ +M ++G  PD  T  S+++AC       +GL 
Sbjct: 210 ERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQ 269

Query: 477 IFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
           I  ++++ NK +        +VD+ A+   +++A
Sbjct: 270 IHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEA 303



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 141/333 (42%), Gaps = 68/333 (20%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  S L+  Y K G +  AE +F  + E+N+V+W+ +I  Y  NG   ++++ F  MM
Sbjct: 181 DVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMM 240

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
            SGL P+  T+  V+ A A L  L+    IH  +VK     D                  
Sbjct: 241 DSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKV 300

Query: 106 -----LFEGLKNPYLVSCNAIVAG-----------FINNKLFQ----------------- 132
                +F+ +    +VS  ++V+G           F+ +K+ Q                 
Sbjct: 301 NEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNG 360

Query: 133 ---QAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLIL------ 183
              +A+ LF   +   + P   T   ++  C  L    L    H   +K G         
Sbjct: 361 ENEEALRLFRLLKRESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAES 420

Query: 184 DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMR 243
           D+ V NS++DMY     ++   ++F +M+ +D +SW  ++  +    Y  +AL+IFR+M 
Sbjct: 421 DIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKM- 479

Query: 244 KSRIIC----DTVALLNLISVNAILGDLKRGKQ 272
              ++C    D V ++ ++   +  G ++ G+ 
Sbjct: 480 ---LVCGEKPDHVTMIGVLCACSHAGLVEEGRH 509



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 102/227 (44%), Gaps = 43/227 (18%)

Query: 7   NSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSG 66
           + + ++S Y ++  +K A  +F ++ ++NVVSW+ +I GY+ NG +E++++ F  +    
Sbjct: 317 SETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRES 376

Query: 67  LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE----------------------- 103
           + P  +T   +L A A L +L L R  H  ++K G E                       
Sbjct: 377 IWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCG 436

Query: 104 -----SDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                S +FE +K    VS NAI+ G+  N    +A+ +F      G  P+ VTM+ V  
Sbjct: 437 SIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGV-- 494

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVL----DMYSCLMDL 201
                    LC   H   ++ G     S+    L    D Y+C++DL
Sbjct: 495 ---------LCACSHAGLVEEGRHYFFSMEEHGLIPLKDHYTCMVDL 532



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 57/99 (57%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L+  Y K G I++   +F+++ E++ VSW+ +I GY+ NG+  ++++ F  M+
Sbjct: 421 DIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKML 480

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL 102
           + G  P+  TM+GVL A +    +E  R     M + GL
Sbjct: 481 VCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEEHGL 519


>gi|225433310|ref|XP_002282466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Vitis vinifera]
          Length = 625

 Score =  243 bits (619), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 137/439 (31%), Positives = 246/439 (56%), Gaps = 8/439 (1%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F+ L++  +   N+++ G+  N+L+ +A  LFN    S ++P+  T+ T+ +    LG+
Sbjct: 80  VFDSLQHKNVFLWNSLINGYAKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGA 139

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
               + IHG +I++G + D  V NS++ MY    + + + ++F EM  ++  SW  ++  
Sbjct: 140 LFSGKSIHGKSIRIGFVSDTVVANSIMSMYCKCGNFEESRKVFDEMTIRNSGSWNVLIAG 199

Query: 226 FV---DFEYAGDALKIFREMRKSRIICDTVALLNLISV-NAILGDLKRGKQLHAQVVLG- 280
           +    +  +  +  +  ++M+   +  D   + +L+ + +   G    G++LH  +V   
Sbjct: 200 YAVSGNCNFREETWEFVKQMQMDEVRPDAYTISSLLPLCDGDKGKWDYGRELHCYIVKNE 259

Query: 281 ---GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
              GL S++ L   +I MYS+   +   R VF+++  +++ SWTA+I+GYV+NG + EAL
Sbjct: 260 LVLGLDSDVHLGCCLIDMYSRSNKVVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEAL 319

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
           + F  M+       + ++LVS+L A    + L    Q+HG A         S+ N LI  
Sbjct: 320 SLFRDMQVIDGIEPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNALIDM 379

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           YSKCG++D A  VFE+    +D +SW+++I GYG++G G+ A+ LY KM + G  PD  T
Sbjct: 380 YSKCGSLDSARRVFEDDSLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMIT 439

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL 517
            + IL+AC  +GL N+GL I++ +I +  ++P+ E + C+VD+L RAG L  A      +
Sbjct: 440 TVGILSACSRSGLVNEGLNIYSSVINDYGIEPTLEIFACIVDMLGRAGQLDPALDFIKAM 499

Query: 518 LEGMGPNIWRALLSGCVLH 536
               GP++W AL+S  ++H
Sbjct: 500 PVEPGPSVWGALVSCSIIH 518



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 126/490 (25%), Positives = 229/490 (46%), Gaps = 37/490 (7%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++KL+  Y        +  +FD +  KNV  W+ +I+GY+ N  + ++ + F+ M  S +
Sbjct: 61  ATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLINGYAKNRLYNEAFQLFNQMCSSDV 120

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
           LP+ FT+  +   ++ L  L   +SIHG  ++ G  SD                      
Sbjct: 121 LPDDFTLSTLSKVSSELGALFSGKSIHGKSIRIGFVSDTVVANSIMSMYCKCGNFEESRK 180

Query: 106 LFEGLKNPYLVSCNAIVAGFI---NNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI----- 157
           +F+ +      S N ++AG+    N    ++        +   + P+A T+ +++     
Sbjct: 181 VFDEMTIRNSGSWNVLIAGYAVSGNCNFREETWEFVKQMQMDEVRPDAYTISSLLPLCDG 240

Query: 158 -RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
            +G    G    C ++    + LGL  DV +   ++DMYS    +    ++F  M+C++V
Sbjct: 241 DKGKWDYGRELHCYIVKNELV-LGLDSDVHLGCCLIDMYSRSNKVVVGRRVFDRMKCRNV 299

Query: 217 ISWTRMMGLFVDFEYAGDALKIFREMRK-SRIICDTVALLNLISVNAILGDLKRGKQLHA 275
            SWT M+  +V+   + +AL +FR+M+    I  + V+L++++   +    L  G+Q+H 
Sbjct: 300 FSWTAMINGYVENGDSDEALSLFRDMQVIDGIEPNRVSLVSVLPACSSFSGLLSGRQIHG 359

Query: 276 QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE-KSLVSWTAIISGYVQNGCAR 334
             V   L +E+ L N++I MYSKCG LDS+R VF   +  K  +SW+++ISGY  +G  +
Sbjct: 360 FAVRKELNNEVSLCNALIDMYSKCGSLDSARRVFEDDSLCKDAISWSSMISGYGLHGKGQ 419

Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLH-GIAFEAGFPRYRSVQNC 393
           EA+  + KM Q      D IT V IL+A      +   L ++  +  + G      +  C
Sbjct: 420 EAILLYDKMLQAGIRP-DMITTVGILSACSRSGLVNEGLNIYSSVINDYGIEPTLEIFAC 478

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           ++    + G +D A    + M        W  ++    ++G  E     Y  + +  E  
Sbjct: 479 IVDMLGRAGQLDPALDFIKAMPVEPGPSVWGALVSCSIIHGDLEMQELAYRFLIQL-EPE 537

Query: 454 DSSTYLSILN 463
           + S Y+SI N
Sbjct: 538 NPSNYVSISN 547



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/362 (24%), Positives = 178/362 (49%), Gaps = 34/362 (9%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSING---FHEKSMKAFS 60
           D   ++ ++S Y K G  +E+  +FDE+  +N  SW+++I GY+++G   F E++ +   
Sbjct: 158 DTVVANSIMSMYCKCGNFEESRKVFDEMTIRNSGSWNVLIAGYAVSGNCNFREETWEFVK 217

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQ-NLELARSIHGLMVK----FGLESD---------- 105
            M +  + P+++T+  +L    G +   +  R +H  +VK     GL+SD          
Sbjct: 218 QMQMDEVRPDAYTISSLLPLCDGDKGKWDYGRELHCYIVKNELVLGLDSDVHLGCCLIDM 277

Query: 106 ------------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRG-SGLVPNAVT 152
                       +F+ +K   + S  A++ G++ N    +A+ LF   +   G+ PN V+
Sbjct: 278 YSRSNKVVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGIEPNRVS 337

Query: 153 MLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME 212
           +++V+  C +         IHG  ++  L  +VS+ N+++DMYS    LD+A ++F +  
Sbjct: 338 LVSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVFEDDS 397

Query: 213 -CKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGK 271
            CKD ISW+ M+  +       +A+ ++ +M ++ I  D +  + ++S  +  G +  G 
Sbjct: 398 LCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSACSRSGLVNEGL 457

Query: 272 QLHAQVVLG-GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQI-TEKSLVSWTAIISGYVQ 329
            +++ V+   G++  L +   I+ M  + G LD +      +  E     W A++S  + 
Sbjct: 458 NIYSSVINDYGIEPTLEIFACIVDMLGRAGQLDPALDFIKAMPVEPGPSVWGALVSCSII 517

Query: 330 NG 331
           +G
Sbjct: 518 HG 519



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/261 (29%), Positives = 126/261 (48%), Gaps = 9/261 (3%)

Query: 251 TVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFN 310
           ++ALL  +  +     LK  +Q H++++  GL     L+  +I  Y+ C     SR VF+
Sbjct: 23  SLALLQSLHFSVTHKSLKLTRQSHSRILSLGLSQNSLLATKLIFAYAICQHPYHSRLVFD 82

Query: 311 QITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALE 370
            +  K++  W ++I+GY +N    EA   F +M        D  TL ++   S EL AL 
Sbjct: 83  SLQHKNVFLWNSLINGYAKNRLYNEAFQLFNQMCSSDV-LPDDFTLSTLSKVSSELGALF 141

Query: 371 ICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGY 430
               +HG +   GF     V N ++S Y KCGN + +  VF+EM  +R+  SWN +I GY
Sbjct: 142 SGKSIHGKSIRIGFVSDTVVANSIMSMYCKCGNFEESRKVFDEMT-IRNSGSWNVLIAGY 200

Query: 431 GVNGH---GETALALYHKMTETGEVPDSSTYLSILNAC-GHAGLTNDGLVIFNQMIEENK 486
            V+G+    E       +M      PD+ T  S+L  C G  G  + G  +   +++   
Sbjct: 201 AVSGNCNFREETWEFVKQMQMDEVRPDAYTISSLLPLCDGDKGKWDYGRELHCYIVKNEL 260

Query: 487 V--KPSQEHYG-CVVDLLARA 504
           V    S  H G C++D+ +R+
Sbjct: 261 VLGLDSDVHLGCCLIDMYSRS 281


>gi|147853412|emb|CAN82303.1| hypothetical protein VITISV_013933 [Vitis vinifera]
          Length = 549

 Score =  243 bits (619), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 146/485 (30%), Positives = 241/485 (49%), Gaps = 44/485 (9%)

Query: 119 NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIK 178
           NAI++GFI N   ++    +   R  G++P+  T    I+ C+ +      + IHGL  K
Sbjct: 28  NAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFPCAIKACLDVLE---IKKIHGLLFK 84

Query: 179 LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKI 238
            GL LDV + +++++ Y     ++ A   F E+  +DV+ W  M+  +         L+ 
Sbjct: 85  FGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLET 144

Query: 239 FREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSK 298
           FR M    ++     +  ++SV A++GDL  G+ +H   +  G  S + +SNS+I MY K
Sbjct: 145 FRRMNDESVVPSRFTVTGILSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGK 204

Query: 299 CGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVS 358
           C  ++ +  +F  + EK + SW +I S + Q G     L    +M        D +T+ +
Sbjct: 205 CKCIEDALEIFEMMREKDIFSWNSIXSVHEQCGDHDGTLRLLDRMLGAGIQP-DLVTVTT 263

Query: 359 ILTASGELAALEICLQLHGIAFEAGFPRYRS------VQNCLISSYSKCGNVDLAYIVFE 412
           +L A   LAAL    ++HG    +G  +         ++N +I  Y+KCG++  A++VFE
Sbjct: 264 VLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFE 323

Query: 413 EMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTN 472
            M   +DV SWN +I GYG++G+G  AL ++ +M E    PD  T++ +L+AC HAG  +
Sbjct: 324 RMXN-KDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVS 382

Query: 473 DGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSG 532
            G     QM  +  V P+ EHY CV+D+L RAG L +A  LA  +     P +WRALL+ 
Sbjct: 383 QGRNFLAQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAA 442

Query: 533 CVLH---------------------------------VGRFQDAEALRSGSQKKGIIKIP 559
           C LH                                 VGR+++   +R   +++ + K P
Sbjct: 443 CRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKTP 502

Query: 560 GISFL 564
           G S++
Sbjct: 503 GCSWI 507



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 136/512 (26%), Positives = 231/512 (45%), Gaps = 51/512 (9%)

Query: 15  YFKSGKIKEAENLF-DEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFT 73
           Y K  ++  A ++F D   E NV +++ +I G+  NGF E+  + +  M   G++P+ FT
Sbjct: 2   YSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFT 61

Query: 74  MVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPYL---------------- 115
               + A   L  LE+ + IHGL+ KFGLE D+F G  L N YL                
Sbjct: 62  FPCAIKAC--LDVLEI-KKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELP 118

Query: 116 ----VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCEL 171
               V  NA+V G+     F+  +  F       +VP+  T+  ++     +G      +
Sbjct: 119 IRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGILSVFAVMGDLNNGRI 178

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           IHG  +K+G    V+V+NS++DMY     ++ A++IF  M  KD+ SW  +  +    E 
Sbjct: 179 IHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIXSV---HEQ 235

Query: 232 AGD---ALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR- 287
            GD    L++   M  + I  D V +  ++   + L  L  G+++H  +++ GL  + + 
Sbjct: 236 CGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKD 295

Query: 288 -----LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
                L N++I MY+KCG +  +  VF ++  K + SW  +I GY  +G   EAL  F +
Sbjct: 296 IDDVLLKNAVIDMYAKCGSMRDAHLVFERMXNKDVASWNIMIMGYGMHGYGNEALEMFSR 355

Query: 343 MRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ------NCLIS 396
           M + +    D +T V +L+A      +       G  F A       V        C+I 
Sbjct: 356 MCEVQLKP-DEVTFVGVLSACSHAGFVS-----QGRNFLAQMKSKYDVAPTIEHYTCVID 409

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
              + G +D AY +   M    + V W  ++    ++ H   A     ++ E  E     
Sbjct: 410 MLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFEL-EPEHCG 468

Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVK 488
           +Y+ + N  G  G   + L + + M ++N  K
Sbjct: 469 SYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRK 500



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 170/359 (47%), Gaps = 40/359 (11%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  S L++ Y K G ++ A+  F+E+P ++VV W+ +++GY+  G  E  ++ F  M
Sbjct: 89  LDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRM 148

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES------------------ 104
               ++P+ FT+ G+L   A + +L   R IHG  +K G +S                  
Sbjct: 149 NDESVVPSRFTVTGILSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCI 208

Query: 105 ----DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
               ++FE ++   + S N+I +           + L +   G+G+ P+ VT+ TV+  C
Sbjct: 209 EDALEIFEMMREKDIFSWNSIXSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPAC 268

Query: 161 VALGSRALCELIHGLTIKLGL------ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
             L +      IHG  I  GL      I DV + N+V+DMY+    +  A  +F  M  K
Sbjct: 269 SHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMXNK 328

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
           DV SW  M+  +    Y  +AL++F  M + ++  D V  + ++S  +  G + +G+   
Sbjct: 329 DVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFL 388

Query: 275 AQVVLGGLQSELRLSNSI------IAMYSKCGDLDSSRSV-FNQITEKSLVSWTAIISG 326
           AQ     ++S+  ++ +I      I M  + G LD +  +      E + V W A+++ 
Sbjct: 389 AQ-----MKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAA 442



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 110/220 (50%), Gaps = 13/220 (5%)

Query: 295 MYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDS 353
           MYSKC  ++ + S+F+  T E ++ ++ AIISG++ NG   E    + KMR E     D 
Sbjct: 1   MYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGV-MPDK 59

Query: 354 ITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEE 413
            T    + A   L  LEI  ++HG+ F+ G      + + L++ Y K G ++ A + FEE
Sbjct: 60  FTFPCAIKAC--LDVLEI-KKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEE 116

Query: 414 MGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTND 473
           +  +RDVV WN ++ GY   G  E  L  + +M +   VP   T   IL+     G  N+
Sbjct: 117 LP-IRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGILSVFAVMGDLNN 175

Query: 474 GLVIFN---QMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
           G +I     +M  ++ V  S      ++D+  +  C+ DA
Sbjct: 176 GRIIHGFAMKMGYDSGVAVSNS----LIDMYGKCKCIEDA 211


>gi|242082744|ref|XP_002441797.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
 gi|241942490|gb|EES15635.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
          Length = 839

 Score =  242 bits (618), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 160/570 (28%), Positives = 268/570 (47%), Gaps = 28/570 (4%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D    S L+  Y K   +++A   F  + E+N VSW   I G   N  + + ++ F  M
Sbjct: 169 MDVRAGSALVDMYGKCRSLEDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGLELFVQM 228

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
              GL  +      V  + A +  L  AR +H   +K    +D                 
Sbjct: 229 QRLGLGVSQPAYASVFRSCAAITCLSTARQLHAHAIKNKFSADRVVGTAIVDVYAKADSL 288

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                 F  L N  + +CNA++ G +   L  +A+ LF F   SG+  + V++  V   C
Sbjct: 289 VDARRAFFSLPNHTVQACNAMMVGLVRTGLGAEALQLFQFMTRSGIGFDVVSLSGVFSAC 348

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             +        +H L IK G  +DV V N++LD+Y     L  A  +F+EME +D +SW 
Sbjct: 349 AEVKGYLQGLQVHCLAIKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWN 408

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++      E   D +    EM +  +  D     +++   A L  L+ G  +H + +  
Sbjct: 409 AIIAALEQNECYEDTIAYLNEMLRYGMEPDDFTYGSVLKACAGLQSLEYGSVVHGKAIKS 468

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           GL  +  +S++++ MY KCG +  ++ + ++I  + LVSW +IISG+  N  + EA   F
Sbjct: 469 GLGLDAFVSSTVVDMYCKCGMITEAQKLHDRIGGQELVSWNSIISGFSLNKQSEEAQKFF 528

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            +M        D  T  ++L     LA +E+  Q+HG   +        + + L+  Y+K
Sbjct: 529 SEMLDIGVKP-DHFTYATVLDTCANLATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAK 587

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CGN+  + ++FE+   L D VSWN +I GY ++G G  AL ++ +M +   VP+ +T+++
Sbjct: 588 CGNMPDSLLMFEKAQKL-DFVSWNAMICGYALHGQGFEALEMFERMQQANVVPNHATFVA 646

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           +L AC H GL +DG   F  M    K++P  EH+ C+VD+L R+    +A      +   
Sbjct: 647 VLRACSHVGLLDDGCRYFYLMTSRYKLEPQLEHFACMVDILGRSKGPQEALKFIRSMPLE 706

Query: 521 MGPNIWRALLSGCVLHVGRFQDAEALRSGS 550
               IW+ LLS C +     QD E   + +
Sbjct: 707 ADAVIWKTLLSICKIR----QDVEVAETAA 732



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 157/578 (27%), Positives = 266/578 (46%), Gaps = 36/578 (6%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  D  + + +L+ Y  +G    A +LF  +P+ +VVSW+ ++ GY   G    S+    
Sbjct: 66  PHRDTVSWNTMLTAYAHAGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDSVGLSV 125

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL-------------- 106
            M   G+ P+  T+  +L A  GL++L L   IH + VK GLE D+              
Sbjct: 126 EMARRGVAPDRTTLAVLLKACGGLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYGKCR 185

Query: 107 --------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                   F G+     VS  A +AG + N+ + + + LF   +  GL  +     +V R
Sbjct: 186 SLEDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPAYASVFR 245

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C A+   +    +H   IK     D  V  +++D+Y+    L  A + F  +    V +
Sbjct: 246 SCAAITCLSTARQLHAHAIKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLPNHTVQA 305

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
              MM   V      +AL++F+ M +S I  D V+L  + S  A +    +G Q+H   +
Sbjct: 306 CNAMMVGLVRTGLGAEALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQVHCLAI 365

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA-- 336
             G   ++ + N+I+ +Y KC  L  +  VF ++ ++  VSW AII+   QN C  +   
Sbjct: 366 KSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIA 425

Query: 337 -LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLI 395
            LN+ ++   E     D  T  S+L A   L +LE    +HG A ++G      V + ++
Sbjct: 426 YLNEMLRYGMEP----DDFTYGSVLKACAGLQSLEYGSVVHGKAIKSGLGLDAFVSSTVV 481

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
             Y KCG +  A  + + +G  +++VSWN+II G+ +N   E A   + +M + G  PD 
Sbjct: 482 DMYCKCGMITEAQKLHDRIGG-QELVSWNSIISGFSLNKQSEEAQKFFSEMLDIGVKPDH 540

Query: 456 STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY--GCVVDLLARAGCLSDASGL 513
            TY ++L+ C +      G  I  Q+I++  +    + Y    +VD+ A+ G + D S L
Sbjct: 541 FTYATVLDTCANLATIELGKQIHGQIIKQEMLG---DEYISSTLVDMYAKCGNMPD-SLL 596

Query: 514 AGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQ 551
             +  + +    W A++ G  LH   F+  E      Q
Sbjct: 597 MFEKAQKLDFVSWNAMICGYALHGQGFEALEMFERMQQ 634



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 133/527 (25%), Positives = 236/527 (44%), Gaps = 52/527 (9%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           + S+ LL  Y + G    A  +FD +P ++ VSW+ +             + A++H    
Sbjct: 40  FVSNCLLQMYARCGGAAHARGVFDVMPHRDTVSWNTM-------------LTAYAH---- 82

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGF 125
                           AG                 G  + LF  + +P +VS NA+++G+
Sbjct: 83  ----------------AG---------------DTGAAASLFGAMPDPDVVSWNALLSGY 111

Query: 126 INNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDV 185
               +F+ +V L       G+ P+  T+  +++ C  L   AL   IH + +K GL +DV
Sbjct: 112 CQRGMFRDSVGLSVEMARRGVAPDRTTLAVLLKACGGLEDLALGVQIHAVAVKTGLEMDV 171

Query: 186 SVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKS 245
              ++++DMY     L+ A++ F  M  ++ +SW   +   V  E     L++F +M++ 
Sbjct: 172 RAGSALVDMYGKCRSLEDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGLELFVQMQRL 231

Query: 246 RIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSS 305
            +     A  ++    A +  L   +QLHA  +     ++  +  +I+ +Y+K   L  +
Sbjct: 232 GLGVSQPAYASVFRSCAAITCLSTARQLHAHAIKNKFSADRVVGTAIVDVYAKADSLVDA 291

Query: 306 RSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGE 365
           R  F  +   ++ +  A++ G V+ G   EAL  F  M +      D ++L  + +A  E
Sbjct: 292 RRAFFSLPNHTVQACNAMMVGLVRTGLGAEALQLFQFMTRSGI-GFDVVSLSGVFSACAE 350

Query: 366 LAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNT 425
           +      LQ+H +A ++GF     V+N ++  Y KC  +  AY+VF+EM   RD VSWN 
Sbjct: 351 VKGYLQGLQVHCLAIKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEME-QRDSVSWNA 409

Query: 426 IIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEEN 485
           II     N   E  +A  ++M   G  PD  TY S+L AC        G V+  + I+  
Sbjct: 410 IIAALEQNECYEDTIAYLNEMLRYGMEPDDFTYGSVLKACAGLQSLEYGSVVHGKAIKSG 469

Query: 486 KVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSG 532
            +         VVD+  + G +++A  L  + + G     W +++SG
Sbjct: 470 -LGLDAFVSSTVVDMYCKCGMITEAQKLHDR-IGGQELVSWNSIISG 514



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 117/275 (42%), Gaps = 34/275 (12%)

Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKC--------------------------- 299
           L  G+  HA++++ G      +SN ++ MY++C                           
Sbjct: 20  LATGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGAAHARGVFDVMPHRDTVSWNTMLTA 79

Query: 300 ----GDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSIT 355
               GD  ++ S+F  + +  +VSW A++SGY Q G  R+++   ++M +    + D  T
Sbjct: 80  YAHAGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDSVGLSVEMARRGV-APDRTT 138

Query: 356 LVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMG 415
           L  +L A G L  L + +Q+H +A + G        + L+  Y KC +++ A   F  MG
Sbjct: 139 LAVLLKACGGLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYGKCRSLEDALRFFHGMG 198

Query: 416 FLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGL 475
             R+ VSW   I G   N      L L+ +M   G       Y S+  +C      +   
Sbjct: 199 -ERNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPAYASVFRSCAAITCLSTAR 257

Query: 476 VIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
            +    I +NK    +     +VD+ A+A  L DA
Sbjct: 258 QLHAHAI-KNKFSADRVVGTAIVDVYAKADSLVDA 291



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 80/210 (38%), Gaps = 42/210 (20%)

Query: 360 LTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRD 419
           L A    +AL      H     +GF     V NCL+  Y++CG    A  VF+ M   RD
Sbjct: 11  LCAGAGRSALATGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGAAHARGVFDVMPH-RD 69

Query: 420 VVSWNTIIYGYGVNGHGETALALYH-------------------------------KMTE 448
            VSWNT++  Y   G    A +L+                                +M  
Sbjct: 70  TVSWNTMLTAYAHAGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDSVGLSVEMAR 129

Query: 449 TGEVPDSSTYLSILNACGHAGLTNDGL-VIFNQMIEENKVKPSQEHYGCVVDLLARAGCL 507
            G  PD +T   +L ACG  GL +  L V  + +  +  ++        +VD+  +   L
Sbjct: 130 RGVAPDRTTLAVLLKACG--GLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYGKCRSL 187

Query: 508 SDASGLAGKLLEGMGPN---IWRALLSGCV 534
            DA     +   GMG      W A ++GCV
Sbjct: 188 EDAL----RFFHGMGERNSVSWGAAIAGCV 213


>gi|242092246|ref|XP_002436613.1| hypothetical protein SORBIDRAFT_10g005800 [Sorghum bicolor]
 gi|241914836|gb|EER87980.1| hypothetical protein SORBIDRAFT_10g005800 [Sorghum bicolor]
          Length = 683

 Score =  242 bits (618), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 171/611 (27%), Positives = 287/611 (46%), Gaps = 59/611 (9%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           +KLLS Y   G +  A  +FD  P  +  S+ +++        H +++     M      
Sbjct: 68  TKLLSCYAALGDLASARMVFDGTPRPDAYSYGVMLWCLVQAERHAEAVALHQDMRRRRPC 127

Query: 69  P---NSFTMVGVLVAAAGLQNLELARSIHGLMVKFG-------------------LE--S 104
           P   + F +   L A     +      +H   VK G                   LE   
Sbjct: 128 PEAQDDFVLSLALKACIRSADYGYGTRLHCDAVKVGGADGFVMNSLVDMYAKAGDLECAR 187

Query: 105 DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
            +FE +    +VS  ++++G + N      +LLFN  R   + P+  T+ TVI  C AL 
Sbjct: 188 KVFERIPGRNVVSWTSMLSGCVQNGFAADGLLLFNKMRQDNVPPSEYTIATVITACSALI 247

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
                  +HG  IK GL+ +  ++ ++LDMY    +L+ A  +F E+   D++ WT M+ 
Sbjct: 248 GLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGELEDAQCVFDELSYIDLVLWTTMIV 307

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            +       DAL++F + + + I+ ++V +  ++S +A L DL  G+ +H   V  GL  
Sbjct: 308 GYTQNGNPLDALRLFLDKKFANIVPNSVTIATVLSASAQLRDLSLGRSIHGIAVKLGLVE 367

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
              + N+++ MY+KC  +  +  +F  I+ K +V+W +++SGY +N    +AL  F +M 
Sbjct: 368 YTVVVNALVDMYAKCQAVSEANRIFGSISNKDVVAWNSMLSGYAENNMCNDALMLFKQM- 426

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
             K  S D+I++V  L+AS  L  L I    HG A +  F     V   L++ Y+KCG++
Sbjct: 427 SLKGPSPDAISVVHALSASVCLGDLLIGKSFHGYAVKHAFLSNIYVSTALLNLYNKCGDL 486

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
             A  VF+EM   R+ V+W  +I GYG+ G    ++ L+ +M + G  P+   + SIL+ 
Sbjct: 487 PSARRVFDEMND-RNSVTWCAMIGGYGMQGDSAGSIDLFGEMLKDGVHPNDVAFTSILST 545

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C H G+       F+ M +   + PS +HY C+VD+LARAG L +A      +      +
Sbjct: 546 CSHTGMVTAAKRYFDSMAQHFNITPSMKHYACMVDVLARAGNLEEALEFIDNMPMQADTS 605

Query: 525 IWRALLSGCVLHV---------------------------------GRFQDAEALRSGSQ 551
           +W A L GC LH                                  G ++ ++A+R   Q
Sbjct: 606 VWGAFLHGCELHSRLQFGEEAIKRMMVLHPERPDLYVLISNLYTSNGMWEKSQAIRRWMQ 665

Query: 552 KKGIIKIPGIS 562
           +KG++K+PG S
Sbjct: 666 EKGLVKLPGYS 676



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 137/512 (26%), Positives = 246/512 (48%), Gaps = 33/512 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L+  Y K+G ++ A  +F+ IP +NVVSW+ ++ G   NGF    +  F+ M 
Sbjct: 166 DGFVMNSLVDMYAKAGDLECARKVFERIPGRNVVSWTSMLSGCVQNGFAADGLLLFNKMR 225

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
              + P+ +T+  V+ A + L  L   R +HG ++K GL S+                  
Sbjct: 226 QDNVPPSEYTIATVITACSALIGLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGELE 285

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +F+ L    LV    ++ G+  N     A+ LF   + + +VPN+VT+ TV+    
Sbjct: 286 DAQCVFDELSYIDLVLWTTMIVGYTQNGNPLDALRLFLDKKFANIVPNSVTIATVLSASA 345

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            L   +L   IHG+ +KLGL+    V N+++DMY+    +  A +IF  +  KDV++W  
Sbjct: 346 QLRDLSLGRSIHGIAVKLGLVEYTVVVNALVDMYAKCQAVSEANRIFGSISNKDVVAWNS 405

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+  + +     DAL +F++M       D +++++ +S +  LGDL  GK  H   V   
Sbjct: 406 MLSGYAENNMCNDALMLFKQMSLKGPSPDAISVVHALSASVCLGDLLIGKSFHGYAVKHA 465

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
             S + +S +++ +Y+KCGDL S+R VF+++ +++ V+W A+I GY   G +  +++ F 
Sbjct: 466 FLSNIYVSTALLNLYNKCGDLPSARRVFDEMNDRNSVTWCAMIGGYGMQGDSAGSIDLFG 525

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN--CLISSYS 399
           +M ++     D +   SIL+       +    + +  +    F    S+++  C++   +
Sbjct: 526 EMLKDGVHPND-VAFTSILSTCSH-TGMVTAAKRYFDSMAQHFNITPSMKHYACMVDVLA 583

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGH---GETALALYHKMTETGEVPDSS 456
           + GN++ A    + M    D   W   ++G  ++     GE A+     M    E PD  
Sbjct: 584 RAGNLEEALEFIDNMPMQADTSVWGAFLHGCELHSRLQFGEEAIK--RMMVLHPERPD-- 639

Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVK 488
            Y+ I N     G+      I   M E+  VK
Sbjct: 640 LYVLISNLYTSNGMWEKSQAIRRWMQEKGLVK 671



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 116/256 (45%), Gaps = 18/256 (7%)

Query: 265 GDLKRGKQLHAQVVL---GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWT 321
           G L   + LHA+++    G L   LR    +++ Y+  GDL S+R VF+        S+ 
Sbjct: 40  GTLPSLRVLHARLLTHTQGLLLGSLRARTKLLSCYAALGDLASARMVFDGTPRPDAYSYG 99

Query: 322 AIISGYVQNGCARE--ALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIA 379
            ++   VQ     E  AL+Q ++ R+   ++ D   L   L A    A      +LH  A
Sbjct: 100 VMLWCLVQAERHAEAVALHQDMRRRRPCPEAQDDFVLSLALKACIRSADYGYGTRLHCDA 159

Query: 380 FEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETA 439
            + G      V N L+  Y+K G+++ A  VFE +   R+VVSW +++ G   NG     
Sbjct: 160 VKVGGAD-GFVMNSLVDMYAKAGDLECARKVFERIPG-RNVVSWTSMLSGCVQNGFAADG 217

Query: 440 LALYHKMTETGEVPDSSTYLSILNACG-----HAGLTNDGLVIFNQMIEENKVKPSQEHY 494
           L L++KM +    P   T  +++ AC      H G    G VI   ++  + +  +    
Sbjct: 218 LLLFNKMRQDNVPPSEYTIATVITACSALIGLHQGRWMHGSVIKQGLMSNSFISAA---- 273

Query: 495 GCVVDLLARAGCLSDA 510
             ++D+  + G L DA
Sbjct: 274 --LLDMYVKCGELEDA 287


>gi|225460139|ref|XP_002275897.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71460,
           chloroplastic-like [Vitis vinifera]
          Length = 725

 Score =  242 bits (618), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 148/527 (28%), Positives = 267/527 (50%), Gaps = 27/527 (5%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSING--FHEKSMKAFSHMMLSG 66
           +KL+  Y   G +++A  +FD +  K+V +W+ ++ G  I+G   + +++  +S M   G
Sbjct: 190 TKLVHMYTSCGSLEDARGVFDGVSSKSVYTWNALLRGNVISGRRHYREALSTYSEMRELG 249

Query: 67  LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--------------------- 105
           +  N ++   ++ + AG          H L++K GL                        
Sbjct: 250 VELNVYSFSCMIKSFAGATAFRQGLKAHALLIKNGLVDSSILRTSLIDMYFKCGKIKLAR 309

Query: 106 -LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
            +FE +    +V   A++AGF +N+L ++A+    + R  G+ PN+V M T++     +G
Sbjct: 310 LMFEEIVERDVVVWGAMIAGFGHNRLQREALEYLRWMRREGICPNSVIMTTILPVIGEVG 369

Query: 165 SRALCELIHGLTIKL-GLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
           +  L   +H   +K       V + ++++DMY    D+ +  Q+F     ++ +SWT +M
Sbjct: 370 AWKLGREVHAYVVKTKSYSKQVFIQSALIDMYCKCGDMASGRQVFYASTERNAVSWTALM 429

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
             +V       AL+    M++     D V +  ++ V A L  L++GK++H+  V  G  
Sbjct: 430 SGYVSNGRLDQALRSIAWMQQEGFRPDVVTVATVLPVCAELRALRQGKEIHSYAVKNGFL 489

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
             + ++ S++ MYSKCG+LD S  +F+ +  ++++SWTA+I  YV+NGC  EA+  F  M
Sbjct: 490 PNVSIATSLMVMYSKCGNLDYSFKLFDGMDARNVISWTAMIDSYVENGCLHEAVGVFRSM 549

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
           +  K    DS+ +  IL+  GEL  L++  ++HG   +  F     V   +I  Y K G 
Sbjct: 550 QLSK-HRPDSVAMARILSICGELRVLKLGKEIHGQILKKDFESIPFVSAEIIKMYGKFGA 608

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           +  A + F+ +   +  ++W  II  YG N   + A+ L+H+M   G +P+  T+ ++L+
Sbjct: 609 ISKAKLAFKAIP-AKGSMAWTAIIEAYGYNDLYQDAINLFHQMQSDGFIPNHYTFKAVLS 667

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
            C  A L +D  +IFN M    ++K S EHY  +++LL R G   DA
Sbjct: 668 ICERAELADDACLIFNLMSRRYRIKASNEHYSSIIELLNRVGRTEDA 714



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 117/452 (25%), Positives = 207/452 (45%), Gaps = 33/452 (7%)

Query: 111 KNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCE 170
           KNP+ +  +  +  F      ++A+ + ++    G+  N  T  +++R CV   S     
Sbjct: 114 KNPHAIFSD--IQRFARQGKLKEALTILDYCDQQGIPVNPTTFSSLLRACVESKS----- 166

Query: 171 LIHGLTIKLGLILDVSVNNSVL-----DMYSCLMDLDAAIQIFREMECKDVISWTRMM-- 223
           L HG  I + + ++   NN  L      MY+    L+ A  +F  +  K V +W  ++  
Sbjct: 167 LTHGKQIHVHIRINGLENNEFLRTKLVHMYTSCGSLEDARGVFDGVSSKSVYTWNALLRG 226

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
            +     +  +AL  + EMR+  +  +  +   +I   A     ++G + HA ++  GL 
Sbjct: 227 NVISGRRHYREALSTYSEMRELGVELNVYSFSCMIKSFAGATAFRQGLKAHALLIKNGLV 286

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
               L  S+I MY KCG +  +R +F +I E+ +V W A+I+G+  N   REAL     M
Sbjct: 287 DSSILRTSLIDMYFKCGKIKLARLMFEEIVERDVVVWGAMIAGFGHNRLQREALEYLRWM 346

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEA-GFPRYRSVQNCLISSYSKCG 402
           R+E     +S+ + +IL   GE+ A ++  ++H    +   + +   +Q+ LI  Y KCG
Sbjct: 347 RREGI-CPNSVIMTTILPVIGEVGAWKLGREVHAYVVKTKSYSKQVFIQSALIDMYCKCG 405

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
           ++     VF      R+ VSW  ++ GY  NG  + AL     M + G  PD  T  ++L
Sbjct: 406 DMASGRQVFYA-STERNAVSWTALMSGYVSNGRLDQALRSIAWMQQEGFRPDVVTVATVL 464

Query: 463 NACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM- 521
             C        G  I +  + +N   P+      ++ + ++ G L      + KL +GM 
Sbjct: 465 PVCAELRALRQGKEIHSYAV-KNGFLPNVSIATSLMVMYSKCGNLD----YSFKLFDGMD 519

Query: 522 GPNI--WRALL-----SGCVLH--VGRFQDAE 544
             N+  W A++     +GC LH  VG F+  +
Sbjct: 520 ARNVISWTAMIDSYVENGC-LHEAVGVFRSMQ 550



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 136/284 (47%), Gaps = 8/284 (2%)

Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISG 326
           L  GKQ+H  + + GL++   L   ++ MY+ CG L+ +R VF+ ++ KS+ +W A++ G
Sbjct: 167 LTHGKQIHVHIRINGLENNEFLRTKLVHMYTSCGSLEDARGVFDGVSSKSVYTWNALLRG 226

Query: 327 YVQNGCA--REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGF 384
            V +G    REAL+ + +MR+   + ++  +   ++ +     A    L+ H +  + G 
Sbjct: 227 NVISGRRHYREALSTYSEMRELGVE-LNVYSFSCMIKSFAGATAFRQGLKAHALLIKNGL 285

Query: 385 PRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH 444
                ++  LI  Y KCG + LA ++FEE+   RDVV W  +I G+G N     AL    
Sbjct: 286 VDSSILRTSLIDMYFKCGKIKLARLMFEEI-VERDVVVWGAMIAGFGHNRLQREALEYLR 344

Query: 445 KMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARA 504
            M   G  P+S    +IL   G  G    G  +   +++             ++D+  + 
Sbjct: 345 WMRREGICPNSVIMTTILPVIGEVGAWKLGREVHAYVVKTKSYSKQVFIQSALIDMYCKC 404

Query: 505 GCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRS 548
           G ++    +     E    + W AL+SG V + GR    +ALRS
Sbjct: 405 GDMASGRQVFYASTERNAVS-WTALMSGYVSN-GRLD--QALRS 444



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 79/175 (45%), Gaps = 22/175 (12%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ L+  Y K G +  +  LFD +  +NV+SW+ +I  Y  NG   +++  F  M LS  
Sbjct: 495 ATSLMVMYSKCGNLDYSFKLFDGMDARNVISWTAMIDSYVENGCLHEAVGVFRSMQLSKH 554

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
            P+S  M  +L     L+ L+L + IHG ++K   ES                       
Sbjct: 555 RPDSVAMARILSICGELRVLKLGKEIHGQILKKDFESIPFVSAEIIKMYGKFGAISKAKL 614

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
            F+ +     ++  AI+  +  N L+Q A+ LF+  +  G +PN  T   V+  C
Sbjct: 615 AFKAIPAKGSMAWTAIIEAYGYNDLYQDAINLFHQMQSDGFIPNHYTFKAVLSIC 669



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 40/74 (54%)

Query: 5   PYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML 64
           P+ S++++  Y K G I +A+  F  IP K  ++W+ +I  Y  N  ++ ++  F  M  
Sbjct: 593 PFVSAEIIKMYGKFGAISKAKLAFKAIPAKGSMAWTAIIEAYGYNDLYQDAINLFHQMQS 652

Query: 65  SGLLPNSFTMVGVL 78
            G +PN +T   VL
Sbjct: 653 DGFIPNHYTFKAVL 666


>gi|242037017|ref|XP_002465903.1| hypothetical protein SORBIDRAFT_01g047870 [Sorghum bicolor]
 gi|241919757|gb|EER92901.1| hypothetical protein SORBIDRAFT_01g047870 [Sorghum bicolor]
          Length = 656

 Score =  242 bits (618), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 150/517 (29%), Positives = 264/517 (51%), Gaps = 25/517 (4%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+ ++  +G++ EA + F  +        +++I G++       ++ A+  M+ +G  P+
Sbjct: 60  LILSHVAAGRMDEAADAFAGVTRPGAFLHNVMIRGFADADLPLDALAAYRAMLDAGARPD 119

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------------FE 108
            FT   VL   A    L   R+ H  ++K GL +D+                      F+
Sbjct: 120 RFTFPVVLKCCARAGALGEGRAAHAAVIKLGLGADVYTANSLVALYAKLGLVGDAERVFD 179

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLV-PNAVTMLTVIRGCVALGSRA 167
           G+    +VS N +V G+++N +   A+  F     +  V  ++V ++  +  C    + A
Sbjct: 180 GMPARDIVSWNTMVDGYVSNGMGALALACFREMNDALQVGHDSVGVIAALAACCLESALA 239

Query: 168 LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
           L   IHG  I+ GL  DV V  S++DMY    ++  A  +F +M  + V++W  M+G + 
Sbjct: 240 LGREIHGYAIRHGLEQDVKVGTSLVDMYCKCGNVFFAENVFAKMPLRTVVTWNCMIGGYA 299

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
             E   DA   F +MR      + V  +NL++  A       G+ +HA VV       + 
Sbjct: 300 LNERPVDAFDCFMQMRVDGFQVEVVTAINLLTACAQTESSLFGRSVHAYVVRRHFLPHVV 359

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
           L  +++ MY K G ++SS  +F QIT+K+LVSW  +I+ Y+     +EA+  F+++  + 
Sbjct: 360 LETALLEMYGKVGKVESSEKIFGQITDKTLVSWNNMIAAYMYMEMYQEAIALFLELLNQP 419

Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
               D  T+ +++ A   L ++  C Q+H    + G+     + N ++  Y++CGN+  +
Sbjct: 420 LYP-DYFTMTTVVPAFVLLGSIRQCKQMHSYIVKLGYGDSTLIMNAVMHMYARCGNIVAS 478

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
             +F++M   +DV+SWNTII GY ++G G+ AL ++ +M  +G  P+ ST++S+L AC  
Sbjct: 479 REIFDKMPG-KDVISWNTIIIGYAIHGQGKIALEMFDEMKCSGMEPNESTFVSVLTACSV 537

Query: 468 AGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARA 504
           +GL  +G   FN M +E  + P  EHYGC+ DLL RA
Sbjct: 538 SGLEAEGWKEFNSMQQEYGMIPQIEHYGCMTDLLGRA 574



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 99/384 (25%), Positives = 188/384 (48%), Gaps = 28/384 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y ++ L++ Y K G + +AE +FD +P +++VSW+ ++ GY  NG    ++  F  M 
Sbjct: 154 DVYTANSLVALYAKLGLVGDAERVFDGMPARDIVSWNTMVDGYVSNGMGALALACFREM- 212

Query: 64  LSGLLPNSFTMVGVLVAAAGL---QNLELARSIHGLMVKFGLESDL-------------- 106
            +  L      VGV+ A A       L L R IHG  ++ GLE D+              
Sbjct: 213 -NDALQVGHDSVGVIAALAACCLESALALGREIHGYAIRHGLEQDVKVGTSLVDMYCKCG 271

Query: 107 --------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                   F  +    +V+ N ++ G+  N+    A   F   R  G     VT + ++ 
Sbjct: 272 NVFFAENVFAKMPLRTVVTWNCMIGGYALNERPVDAFDCFMQMRVDGFQVEVVTAINLLT 331

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C    S      +H   ++   +  V +  ++L+MY  +  ++++ +IF ++  K ++S
Sbjct: 332 ACAQTESSLFGRSVHAYVVRRHFLPHVVLETALLEMYGKVGKVESSEKIFGQITDKTLVS 391

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           W  M+  ++  E   +A+ +F E+    +  D   +  ++    +LG +++ KQ+H+ +V
Sbjct: 392 WNNMIAAYMYMEMYQEAIALFLELLNQPLYPDYFTMTTVVPAFVLLGSIRQCKQMHSYIV 451

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
             G      + N+++ MY++CG++ +SR +F+++  K ++SW  II GY  +G  + AL 
Sbjct: 452 KLGYGDSTLIMNAVMHMYARCGNIVASREIFDKMPGKDVISWNTIIIGYAIHGQGKIALE 511

Query: 339 QFIKMRQEKTDSVDSITLVSILTA 362
            F +M+    +  +S T VS+LTA
Sbjct: 512 MFDEMKCSGMEPNES-TFVSVLTA 534


>gi|356495279|ref|XP_003516506.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19220,
           mitochondrial-like [Glycine max]
          Length = 944

 Score =  242 bits (618), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 180/619 (29%), Positives = 290/619 (46%), Gaps = 69/619 (11%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ L+S Y +   IK AE LF EI  K++VSW+ ++ G++ NG  ++       M   G 
Sbjct: 331 ANSLISLYSQCEDIKAAETLFREIALKDIVSWNAMMEGFASNGKIKEVFDLLVQMQKVGF 390

Query: 68  L-PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--------------------- 105
             P+  T++ +L   A L      R+IHG  ++  + SD                     
Sbjct: 391 FQPDIVTLITLLPLCAELMLSREGRTIHGYAIRRQMISDHVMLLNSLIGMYSKCNLVEKA 450

Query: 106 --LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
             LF        VS NA+++G+ +N+  ++A  LF      G   ++ T+  ++  C +L
Sbjct: 451 ELLFNSTAEKDTVSWNAMISGYSHNRYSEEAQNLFTEMLRWGPNCSSSTVFAILSSCNSL 510

Query: 164 G--SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC-KDVISWT 220
              S    + +H   +K G +  + + N ++ MY    DL A+  I  E     D+ SW 
Sbjct: 511 NINSIHFGKSVHCWQLKSGFLNHILLINILMHMYINCGDLTASFSILHENSALADIASWN 570

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRII-CDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
            ++   V  ++  +AL+ F  MR+   +  D++ L++ +S  A L     GK LH   V 
Sbjct: 571 TLIVGCVRCDHFREALETFNLMRQEPPLNYDSITLVSALSACANLELFNLGKSLHGLTVK 630

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
             L S+ R+ NS+I MY +C D++S++ VF   +  +L SW  +IS    N  +REAL  
Sbjct: 631 SPLGSDTRVQNSLITMYDRCRDINSAKVVFKFFSTPNLCSWNCMISALSHNRESREALEL 690

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           F+ ++ E  +    IT++ +L+A  ++  L    Q+H   F         +   LI  YS
Sbjct: 691 FLNLQFEPNE----ITIIGVLSACTQIGVLRHGKQVHAHVFRTCIQDNSFISAALIDLYS 746

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
            CG +D A  VF      +   +WN++I  YG +G GE A+ L+H+M E+G     ST++
Sbjct: 747 NCGRLDTALQVFRHAK-EKSESAWNSMISAYGYHGKGEKAIKLFHEMCESGARVSKSTFV 805

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519
           S+L+AC H+GL N GL  +  M+E   V+P  EH   VVD+L R+G L +A   A K  +
Sbjct: 806 SLLSACSHSGLVNQGLWFYECMLERYGVQPETEHQVYVVDMLGRSGRLDEAYEFA-KGCD 864

Query: 520 GMGPNIWRALLSGCVLH---------------------------------VGRFQDAEAL 546
             G  +W ALLS C  H                                  G ++DA  L
Sbjct: 865 SSG--VWGALLSACNYHGELKLGKKIAQYLFQLEPQNVGHYISLSNMYVAAGSWKDATEL 922

Query: 547 RSGSQKKGIIKIPGISFLN 565
           R   Q  G+ K  G S ++
Sbjct: 923 RQSIQDLGLRKTAGYSLVD 941



 Score =  195 bits (495), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 144/496 (29%), Positives = 247/496 (49%), Gaps = 32/496 (6%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ LL+ Y K+G    ++ LFDEI  ++ ++W+ ++     N  +  +M  F  M+ +  
Sbjct: 129 STSLLTIYSKAGDFTSSKGLFDEIQNRDAIAWNAIVAASLENKCYRIAMDFFDKMIKAQT 188

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
             +S T++ ++ A+  ++N +  R+IH + +K G+  D                      
Sbjct: 189 GFDSTTLLLIVSASLHMKNFDQGRAIHCVSIKSGMLVDISLGNALVDMYAKCGDLSSSEC 248

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           L+E ++    VS N+I+ G + N+  ++A+  F     S    + V++   I    +LG 
Sbjct: 249 LYEEIECKDAVSWNSIMRGSLYNRHPEKALCYFKRMSFSEETADNVSLCCAISASSSLGE 308

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
            +  + +HGL IKLG    VSV NS++ +YS   D+ AA  +FRE+  KD++SW  MM  
Sbjct: 309 LSFGQSVHGLGIKLGYKSHVSVANSLISLYSQCEDIKAAETLFREIALKDIVSWNAMMEG 368

Query: 226 FVDFEYAGDALKIFREMRKSRII-CDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
           F       +   +  +M+K      D V L+ L+ + A L   + G+ +H   +   + S
Sbjct: 369 FASNGKIKEVFDLLVQMQKVGFFQPDIVTLITLLPLCAELMLSREGRTIHGYAIRRQMIS 428

Query: 285 E-LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
           + + L NS+I MYSKC  ++ +  +FN   EK  VSW A+ISGY  N  + EA N F +M
Sbjct: 429 DHVMLLNSLIGMYSKCNLVEKAELLFNSTAEKDTVSWNAMISGYSHNRYSEEAQNLFTEM 488

Query: 344 RQEKTDSVDSITLVSILTASGEL--AALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
            +   +   S T+ +IL++   L   ++     +H    ++GF  +  + N L+  Y  C
Sbjct: 489 LRWGPNCSSS-TVFAILSSCNSLNINSIHFGKSVHCWQLKSGFLNHILLINILMHMYINC 547

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP---DSSTY 458
           G++  ++ +  E   L D+ SWNT+I G     H   AL  ++ M +  E P   DS T 
Sbjct: 548 GDLTASFSILHENSALADIASWNTLIVGCVRCDHFREALETFNLMRQ--EPPLNYDSITL 605

Query: 459 LSILNACGHAGLTNDG 474
           +S L+AC +  L N G
Sbjct: 606 VSALSACANLELFNLG 621



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 129/447 (28%), Positives = 229/447 (51%), Gaps = 21/447 (4%)

Query: 26  NLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAA---A 82
            LFDE+P++        IHG  I+       +   ++ L    P   T      AA    
Sbjct: 75  QLFDEMPQR-------YIHGREIH------FELVDYIKLCLKKPKIVTATVAHCAALKIG 121

Query: 83  GLQNLELARSIHGLMVK---FGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFN 139
            L +L  + S+  +  K   F     LF+ ++N   ++ NAIVA  + NK ++ A+  F+
Sbjct: 122 ALAHLPTSTSLLTIYSKAGDFTSSKGLFDEIQNRDAIAWNAIVAASLENKCYRIAMDFFD 181

Query: 140 FFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLM 199
               +    ++ T+L ++   + + +      IH ++IK G+++D+S+ N+++DMY+   
Sbjct: 182 KMIKAQTGFDSTTLLLIVSASLHMKNFDQGRAIHCVSIKSGMLVDISLGNALVDMYAKCG 241

Query: 200 DLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLIS 259
           DL ++  ++ E+ECKD +SW  +M   +   +   AL  F+ M  S    D V+L   IS
Sbjct: 242 DLSSSECLYEEIECKDAVSWNSIMRGSLYNRHPEKALCYFKRMSFSEETADNVSLCCAIS 301

Query: 260 VNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVS 319
            ++ LG+L  G+ +H   +  G +S + ++NS+I++YS+C D+ ++ ++F +I  K +VS
Sbjct: 302 ASSSLGELSFGQSVHGLGIKLGYKSHVSVANSLISLYSQCEDIKAAETLFREIALKDIVS 361

Query: 320 WTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIA 379
           W A++ G+  NG  +E  +  ++M++      D +TL+++L    EL        +HG A
Sbjct: 362 WNAMMEGFASNGKIKEVFDLLVQMQKVGFFQPDIVTLITLLPLCAELMLSREGRTIHGYA 421

Query: 380 FEAGF-PRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGET 438
                   +  + N LI  YSKC  V+ A ++F      +D VSWN +I GY  N + E 
Sbjct: 422 IRRQMISDHVMLLNSLIGMYSKCNLVEKAELLFNSTA-EKDTVSWNAMISGYSHNRYSEE 480

Query: 439 ALALYHKMTETGEVPDSSTYLSILNAC 465
           A  L+ +M   G    SST  +IL++C
Sbjct: 481 AQNLFTEMLRWGPNCSSSTVFAILSSC 507



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 147/531 (27%), Positives = 249/531 (46%), Gaps = 40/531 (7%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+  Y K G +  +E L++EI  K+ VSW+ ++ G   N   EK++  F  M  S    +
Sbjct: 233 LVDMYAKCGDLSSSECLYEEIECKDAVSWNSIMRGSLYNRHPEKALCYFKRMSFSEETAD 292

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFE 108
           + ++   + A++ L  L   +S+HGL +K G +S                       LF 
Sbjct: 293 NVSLCCAISASSSLGELSFGQSVHGLGIKLGYKSHVSVANSLISLYSQCEDIKAAETLFR 352

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLV-PNAVTMLTVIRGCVALGSRA 167
            +    +VS NA++ GF +N   ++   L    +  G   P+ VT++T++  C  L    
Sbjct: 353 EIALKDIVSWNAMMEGFASNGKIKEVFDLLVQMQKVGFFQPDIVTLITLLPLCAELMLSR 412

Query: 168 LCELIHGLTIKLGLILD-VSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
               IHG  I+  +I D V + NS++ MYS    ++ A  +F     KD +SW  M+  +
Sbjct: 413 EGRTIHGYAIRRQMISDHVMLLNSLIGMYSKCNLVEKAELLFNSTAEKDTVSWNAMISGY 472

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLI-SVNAI-LGDLKRGKQLHAQVVLGGLQS 284
               Y+ +A  +F EM +    C +  +  ++ S N++ +  +  GK +H   +  G  +
Sbjct: 473 SHNRYSEEAQNLFTEMLRWGPNCSSSTVFAILSSCNSLNINSIHFGKSVHCWQLKSGFLN 532

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITE-KSLVSWTAIISGYVQNGCAREALNQFIKM 343
            + L N ++ MY  CGDL +S S+ ++ +    + SW  +I G V+    REAL  F  M
Sbjct: 533 HILLINILMHMYINCGDLTASFSILHENSALADIASWNTLIVGCVRCDHFREALETFNLM 592

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
           RQE   + DSITLVS L+A   L    +   LHG+  ++       VQN LI+ Y +C +
Sbjct: 593 RQEPPLNYDSITLVSALSACANLELFNLGKSLHGLTVKSPLGSDTRVQNSLITMYDRCRD 652

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           ++ A +VF+      ++ SWN +I     N     AL L+  +      P+  T + +L+
Sbjct: 653 INSAKVVFKFFS-TPNLCSWNCMISALSHNRESREALELFLNLQFE---PNEITIIGVLS 708

Query: 464 ACGHAGLTNDG----LVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
           AC   G+   G      +F   I++N    +      ++DL +  G L  A
Sbjct: 709 ACTQIGVLRHGKQVHAHVFRTCIQDNSFISAA-----LIDLYSNCGRLDTA 754


>gi|297740128|emb|CBI30310.3| unnamed protein product [Vitis vinifera]
          Length = 543

 Score =  242 bits (618), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 152/447 (34%), Positives = 235/447 (52%), Gaps = 10/447 (2%)

Query: 116 VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGL 175
            S NA +      + FQ+A+ L+     SG  PNA T     + C +L        +HG 
Sbjct: 22  ASWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLHGH 81

Query: 176 TIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKD--VISWTRMMGLFVDFEYAG 233
            IK G   +  V  S++ MY     + +A ++F E        + +  ++  +       
Sbjct: 82  VIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFS 141

Query: 234 DALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSII 293
           DA+ +FR+MRK  +  + V +L LI V A    L  G  LHA  V  GL  +L + N ++
Sbjct: 142 DAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLSVGNCLL 201

Query: 294 AMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV-D 352
            MY +CG +D +R +F+ + EK L++W A+ISGY QNG A   L+ + KM  E T  V D
Sbjct: 202 TMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKM--EFTGIVPD 259

Query: 353 SITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFE 412
            +TLV +L++   L A     ++      +GF     ++N LI+ Y++CGN+  A  +F+
Sbjct: 260 PVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKARAIFD 319

Query: 413 EMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTN 472
            M   ++V+SW  II GYG++G GE A+ L+ +M  + E+PD + ++S+L+AC HAGLT 
Sbjct: 320 GMT-EKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAGLTE 378

Query: 473 DGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSG 532
            GL  F  M  +  ++P  EHY CVVDLL RAG L +A  L G +       +W ALL  
Sbjct: 379 KGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAVWGALLGA 438

Query: 533 CVLHVGRFQDAEALRSGSQKKGIIKIP 559
           C +H    ++ E      +K+ + K P
Sbjct: 439 CKIH----RNVELAELAFEKRKLKKEP 461



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 125/454 (27%), Positives = 211/454 (46%), Gaps = 39/454 (8%)

Query: 33  EKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARS 92
           +    SW+  +   +     ++++  +  M+ SG  PN+FT      + A L +L LA S
Sbjct: 18  QNTTASWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASL-SLPLAGS 76

Query: 93  -IHGLMVKFGLESDLF-----------------------EGLKNPYLVSC-NAIVAGFIN 127
            +HG ++K G E + F                       E   +  L  C NA++AG+  
Sbjct: 77  QLHGHVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSL 136

Query: 128 NKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSV 187
           N  F  AVLLF   R  G+  NAVTML +I  C           +H  +++ GL  D+SV
Sbjct: 137 NSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLSV 196

Query: 188 NNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRI 247
            N +L MY     +D A ++F  M  K +I+W  M+  +     AG  L ++R+M  + I
Sbjct: 197 GNCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGI 256

Query: 248 ICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRS 307
           + D V L+ ++S  A LG    G+++  ++ L G      L N++I MY++CG+L  +R+
Sbjct: 257 VPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKARA 316

Query: 308 VFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELA 367
           +F+ +TEK+++SWTAII+GY  +G    A+  F +M     +  D    VS+L+A     
Sbjct: 317 IFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSD-ELPDGAAFVSVLSACSHAG 375

Query: 368 ALEICLQLHGIAFEAGFPRYRSVQ------NCLISSYSKCGNVDLAYIVFEEMGFLRDVV 421
             E      G+ +     R   +Q      +C++    + G ++ A  +   M    D  
Sbjct: 376 LTE-----KGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGA 430

Query: 422 SWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
            W  ++    ++ + E A   + K     E P+S
Sbjct: 431 VWGALLGACKIHRNVELAELAFEKRKLKKE-PES 463



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 161/347 (46%), Gaps = 26/347 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKN--VVSWSIVIHGYSINGFHEKSMKAFSH 61
           +P+  + L+S Y K   I  A  +FDE        V ++ +I GYS+N     ++  F  
Sbjct: 90  EPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFSDAVLLFRQ 149

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------- 105
           M   G+  N+ TM+G++   AG  +L    S+H   V+FGL+ D                
Sbjct: 150 MRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLSVGNCLLTMYVRCGS 209

Query: 106 ------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                 LF+G+    L++ NA+++G+  N L    + L+     +G+VP+ VT++ V+  
Sbjct: 210 VDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSS 269

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C  LG+ A    +       G   +  + N++++MY+   +L  A  IF  M  K+VISW
Sbjct: 270 CAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKARAIFDGMTEKNVISW 329

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG-KQLHAQVV 278
           T ++  +        A+++F EM  S  + D  A ++++S  +  G  ++G     A   
Sbjct: 330 TAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAGLTEKGLYYFTAMER 389

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAII 324
             GLQ      + ++ +  + G L+ +R +   ++ E     W A++
Sbjct: 390 DYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAVWGALL 436



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 83/354 (23%), Positives = 151/354 (42%), Gaps = 51/354 (14%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           LL+ Y + G +  A  LFD +PEK +++W+ +I GY+ NG     +  +  M  +G++P+
Sbjct: 200 LLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPD 259

Query: 71  SFTMVGVLVAAAGL----------QNLELARSIHGLMVKFGL------------ESDLFE 108
             T+VGVL + A L          Q +EL+       +K  L               +F+
Sbjct: 260 PVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKARAIFD 319

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
           G+    ++S  AI+AG+  +   + AV LF+    S  +P+    ++V+  C   G   L
Sbjct: 320 GMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAG---L 376

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMD-------LDAAIQIFREMECK-DVISWT 220
            E   GL     +  D  +     + YSC++D       L+ A ++   M  + D   W 
Sbjct: 377 TE--KGLYYFTAMERDYGLQPGP-EHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAVWG 433

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQ---V 277
            ++G          A KI R +  + +  +   L       +   +L  G  +H++   +
Sbjct: 434 ALLG----------ACKIHRNVELAELAFEKRKLKK--EPESRNEELITGMGVHSEKLAI 481

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNG 331
             G + +E     ++I     CGD      + ++I ++ LV   A    + +NG
Sbjct: 482 AFGLINTEPGTEITVIKNLRVCGDCHLFLKLVSEIVDRQLVVRDATRFHHFKNG 535


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  242 bits (618), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 176/609 (28%), Positives = 283/609 (46%), Gaps = 93/609 (15%)

Query: 42  VIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG 101
           +I GYS  G   +++  +  M++ G+ PN +T   VL     +        +HG +VK G
Sbjct: 102 LIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVKMG 161

Query: 102 LESDLF----------------------EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFN 139
           LE D+F                      EG+    +VS  +++ G+      ++AV LF 
Sbjct: 162 LEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFF 221

Query: 140 FFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLM 199
               +G+ P++VTM+ VI  C  L    + E +     +LGL L+  + N+++DMY    
Sbjct: 222 EMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDMYMKCG 281

Query: 200 DLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLIS 259
            +DAA ++F E   ++++ +  ++  +     A +AL I  EM +     D V +L+ IS
Sbjct: 282 AIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAIS 341

Query: 260 VNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKC-------------------- 299
            +A L DL  GK  H  V+  GL+    + N II MY KC                    
Sbjct: 342 ASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVS 401

Query: 300 -----------GDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
                      GD++S+  VFNQI E++ V W  +ISG VQ     +A+  F +M+ E  
Sbjct: 402 WNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGI 461

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
            + D +T++ I +A G L A E+   +H    + G P    +   L+  +++CG+   A 
Sbjct: 462 KA-DRVTMMGIASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAM 520

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
            VF +M   RDV +W   I    + G+GE A  L+++M   G  PD   ++ +L AC H 
Sbjct: 521 QVFNKMT-ERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHG 579

Query: 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN--IW 526
           G    GL IF+ ++E++ + P  EHYGC+VDLL RAG L +A  L   +   M PN  +W
Sbjct: 580 GQVEQGLHIFS-LMEDHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSM--PMEPNDVVW 636

Query: 527 RALLSGCVLH---------------------------------VGRFQDAEALRSGSQKK 553
            +LL+ C +H                                  G++ D   +R   ++K
Sbjct: 637 GSLLAACRVHKNVEMATYAAERINELAPQRAGVHVLLSNIYASAGKWTDVARVRLNLREK 696

Query: 554 GIIKIPGIS 562
           G+ K+PG S
Sbjct: 697 GVRKVPGSS 705



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 134/485 (27%), Positives = 233/485 (48%), Gaps = 45/485 (9%)

Query: 68  LPNSFT-MVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFI 126
           +P++ T +V      A  ++L+ AR    L  K  + SD         L   N+++ G+ 
Sbjct: 56  IPSTLTKLVNAGAEIASPESLDYARKAFELF-KEDVRSD-------DALFMLNSLIRGYS 107

Query: 127 NNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCE--LIHGLTIKLGLILD 184
           +  L ++A+LL+      G+ PN  T   V+ GC  +   A CE   +HG  +K+GL  D
Sbjct: 108 SAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIA--AFCEGIQVHGSVVKMGLEED 165

Query: 185 VSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRK 244
           V + N ++  Y+    +D   ++F  M  ++V+SWT ++  +   +   +A+ +F EM +
Sbjct: 166 VFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEMVE 225

Query: 245 SRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDS 304
           + I   +V ++ +IS  A L DL  G+++ A +   GL+    + N+++ MY KCG +D+
Sbjct: 226 AGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDA 285

Query: 305 SRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASG 364
           ++ +F++  +++LV +  I+S Y + G AREAL    +M Q+     D +T++S ++AS 
Sbjct: 286 AKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRP-DRVTMLSAISASA 344

Query: 365 ELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM---------- 414
           +L  L      HG     G   + S+ N +I  Y KCG  ++A  VF+ M          
Sbjct: 345 QLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNS 404

Query: 415 ---GFL-----------------RDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
              GF+                 R+ V WNT+I G       E A+ L+ +M   G   D
Sbjct: 405 LTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKAD 464

Query: 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLA 514
             T + I +ACG+ G       + +  IE+N +         +VD+ AR G    A  + 
Sbjct: 465 RVTMMGIASACGYLGAPELAKWV-HTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVF 523

Query: 515 GKLLE 519
            K+ E
Sbjct: 524 NKMTE 528



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 119/498 (23%), Positives = 221/498 (44%), Gaps = 54/498 (10%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L+  Y + G +     +F+ + E+NVVSW+ +I GY+     ++++  F  M+
Sbjct: 165 DVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEMV 224

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE-------------------- 103
            +G+ P+S TMV V+ A A L++L++   +   + + GL+                    
Sbjct: 225 EAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDMYMKCGAID 284

Query: 104 --SDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               LF+   +  LV  N I++ +    L ++A+ + +     G  P+ VTML+ I    
Sbjct: 285 AAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASA 344

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            L      ++ HG  I+ GL    S+ N ++DMY      + A ++F  M  K V+SW  
Sbjct: 345 QLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNS 404

Query: 222 MMGLFV---DFEYA----------------------------GDALKIFREMRKSRIICD 250
           +   F+   D E A                             DA+++FREM+   I  D
Sbjct: 405 LTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKAD 464

Query: 251 TVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFN 310
            V ++ + S    LG  +  K +H  +   G+  ++RL+ +++ M+++CGD  S+  VFN
Sbjct: 465 RVTMMGIASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFN 524

Query: 311 QITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALE 370
           ++TE+ + +WTA I      G    A   F +M  +     D +  V +LTA      +E
Sbjct: 525 KMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKP-DVVLFVQVLTACSHGGQVE 583

Query: 371 ICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGY 430
             L +  +  + G         C++    + G +  A+ + + M    + V W +++   
Sbjct: 584 QGLHIFSLMEDHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLAAC 643

Query: 431 GVNGHGETALALYHKMTE 448
            V+ + E A     ++ E
Sbjct: 644 RVHKNVEMATYAAERINE 661


>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 687

 Score =  242 bits (618), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 166/574 (28%), Positives = 274/574 (47%), Gaps = 94/574 (16%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           + +  ++L+  Y K G +  A  LFD + E+N+ SW+ +I  ++ +GF            
Sbjct: 53  ETFIQNRLIDVYGKCGCVDVARKLFDRMLERNIFSWNSIICAFTKSGF------------ 100

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVA 123
                                    L  ++H           +FE +      S N++++
Sbjct: 101 -------------------------LDDAVH-----------IFEKMPQVDQCSWNSMIS 124

Query: 124 GFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLIL 183
           GF  +  F +A++ F    G G + N  +  + +  C  L    L   IH L  +   + 
Sbjct: 125 GFEQHGRFDEALVYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLS 184

Query: 184 DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMR 243
           DV + ++++DMYS    ++ A  +F EM  +  +SW  ++  +       +ALKIF EM 
Sbjct: 185 DVYMGSALVDMYSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMI 244

Query: 244 KSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV-LGGLQSELRLSNSIIAMYSKCGDL 302
           K  +  D V L +++S  A +  +K G+Q+HA+VV     +++L L N+++ MY+KC  +
Sbjct: 245 KCGVEPDEVTLASVVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRI 304

Query: 303 DSSRSVFNQITEKSLVS-------------------------------WTAIISGYVQNG 331
           + +R +F+ +  +S+VS                               W A+I+G  QNG
Sbjct: 305 NEARIIFDMMPIRSVVSETSMVSGYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNG 364

Query: 332 CAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS-- 389
              EAL  F  +++E        T  ++L A   LA L++  Q H    + GF R++   
Sbjct: 365 ENEEALILFRLLKRESVWPT-HYTFGNLLNACANLADLQLGRQAHSHVLKHGF-RFQYGE 422

Query: 390 -----VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH 444
                V N LI  Y KCG+V+    VF+ M   +D VSWN +I GY  NG G  AL ++ 
Sbjct: 423 DSDVFVGNSLIDMYMKCGSVENGCRVFQHM-LEKDCVSWNAMIVGYAQNGFGNKALEVFC 481

Query: 445 KMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARA 504
           KM E+GE PD  T + +L AC HAGL ++G   F  M  ++ + P ++HY C+VDLL RA
Sbjct: 482 KMLESGEAPDHVTMIGVLCACSHAGLLDEGRYYFRSMTAQHGLMPLKDHYTCMVDLLGRA 541

Query: 505 GCLSDASGLAGKLLEGMGPN--IWRALLSGCVLH 536
           G L +A  L  ++   M P+  +W +LL+ C +H
Sbjct: 542 GYLEEAKNLIEEM--SMQPDAIVWGSLLAACKVH 573



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 148/309 (47%), Gaps = 33/309 (10%)

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
           AG+ L   + ++   +  D+     L++  A     +   ++HA ++     SE  + N 
Sbjct: 2   AGNGL--VKHLKGDLLFLDSSPFSKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNR 59

Query: 292 IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDS- 350
           +I +Y KCG +D +R +F+++ E+++ SW +II  + ++G   +A++ F KM Q    S 
Sbjct: 60  LIDVYGKCGCVDVARKLFDRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSW 119

Query: 351 -----------------------------VDSITLVSILTASGELAALEICLQLHGIAFE 381
                                        V+  +  S L+A   L  L++  Q+H + + 
Sbjct: 120 NSMISGFEQHGRFDEALVYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYR 179

Query: 382 AGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALA 441
           + +     + + L+  YSKCG V+ A  VF+EM  +R  VSWN++I  Y  NG  + AL 
Sbjct: 180 SNYLSDVYMGSALVDMYSKCGRVEYAQSVFDEMT-VRSRVSWNSLITCYEQNGPVDEALK 238

Query: 442 LYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLL 501
           ++ +M + G  PD  T  S+++AC       +G  I  ++++ ++ +        ++D+ 
Sbjct: 239 IFVEMIKCGVEPDEVTLASVVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMY 298

Query: 502 ARAGCLSDA 510
           A+   +++A
Sbjct: 299 AKCNRINEA 307


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  242 bits (617), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 164/577 (28%), Positives = 281/577 (48%), Gaps = 29/577 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEI-PEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           D + ++ L++ Y   G + +A  +FDE   E+N VSW+ ++  Y  N     +++ F  M
Sbjct: 134 DVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEM 193

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
           + SG+ P  F    V+ A  G +N++  R +H ++V+ G E D                 
Sbjct: 194 VWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRV 253

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +FE + +  +VS NA+++G + N    +A+ L    + SGLVPN   + ++++ C
Sbjct: 254 DIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKAC 313

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
              G+  L   IHG  IK     D  +   ++DMY+    LD A+++F  M  +D+I W 
Sbjct: 314 AGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWN 373

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++          +A  IF  +RK  +  +   L  ++   A L      +Q+HA     
Sbjct: 374 ALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKI 433

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           G   +  + N +I  Y KC  L  +  VF + +   +++ T++I+   Q      A+  F
Sbjct: 434 GFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLF 493

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
           ++M ++  +  D   L S+L A   L+A E   Q+H    +  F       N L+ +Y+K
Sbjct: 494 MEMLRKGLEP-DPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAK 552

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CG+++ A + F  +   R VVSW+ +I G   +GHG+ AL L+ +M + G  P+  T  S
Sbjct: 553 CGSIEDAELAFSSLP-ERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTS 611

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           +L AC HAGL ++    FN M E   +  ++EHY C++DLL RAG L DA  L   +   
Sbjct: 612 VLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQ 671

Query: 521 MGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIK 557
              ++W ALL    +H    +D E  +  ++K  I++
Sbjct: 672 ANASVWGALLGASRVH----KDPELGKLAAEKLFILE 704



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 137/514 (26%), Positives = 246/514 (47%), Gaps = 32/514 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + ++ L+  Y K G++  A  +F+++P+ +VVSW+ +I G  +NG   ++++    M 
Sbjct: 236 DVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMK 295

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
            SGL+PN F +  +L A AG    +L R IHG M+K   +SD                  
Sbjct: 296 SSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLD 355

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +F+ + +  L+  NA+++G  +     +A  +F   R  GL  N  T+  V++   
Sbjct: 356 DAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTA 415

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMY---SCLMDLDAAIQIFREMECKDVIS 218
           +L + +    +H L  K+G I D  V N ++D Y   SCL D   AI++F E    D+I+
Sbjct: 416 SLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSD---AIRVFEECSSGDIIA 472

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
            T M+      ++   A+K+F EM +  +  D   L +L++  A L   ++GKQ+HA ++
Sbjct: 473 VTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLI 532

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
                S+    N+++  Y+KCG ++ +   F+ + E+ +VSW+A+I G  Q+G  + AL 
Sbjct: 533 KRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALE 592

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEA-GFPRYRSVQNCLISS 397
            F +M  E  +  + IT+ S+L A      ++   +      E  G  R     +C+I  
Sbjct: 593 LFGRMVDEGINP-NHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDL 651

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
             + G +D A  +   M F  +   W  ++    V+   E       K+    E   S T
Sbjct: 652 LGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPELGKLAAEKLF-ILEPEKSGT 710

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEEN-KVKPS 490
           ++ + N    +G+ N+   +   M + N K +P+
Sbjct: 711 HVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPA 744



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 151/554 (27%), Positives = 252/554 (45%), Gaps = 36/554 (6%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + L+S Y K  +   A  +FDEIP+   VSWS ++  YS NG    +++AF  M   G+ 
Sbjct: 41  NHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVC 100

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--------------------- 107
            N F +  VL     + + +L   +H + +  G  SD+F                     
Sbjct: 101 CNEFALPVVLKC---VPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRV 157

Query: 108 --EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
             E       VS N +++ ++ N     A+ +F     SG+ P       V+  C   GS
Sbjct: 158 FDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACT--GS 215

Query: 166 RAL--CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
           R +     +H + +++G   DV   N+++DMY  +  +D A  IF +M   DV+SW  ++
Sbjct: 216 RNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALI 275

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
              V   +   A+++  +M+ S ++ +   L +++   A  G    G+Q+H  ++     
Sbjct: 276 SGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANAD 335

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
           S+  +   ++ MY+K   LD +  VF+ ++ + L+ W A+ISG    G   EA + F  +
Sbjct: 336 SDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGL 395

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
           R+E    V+  TL ++L ++  L A     Q+H +A + GF     V N LI SY KC  
Sbjct: 396 RKEGL-GVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSC 454

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           +  A  VFEE     D+++  ++I       HGE A+ L+ +M   G  PD     S+LN
Sbjct: 455 LSDAIRVFEECS-SGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLN 513

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYG-CVVDLLARAGCLSDASGLAGKLLEGMG 522
           AC        G  +   +I+   +  S    G  +V   A+ G + DA  LA   L   G
Sbjct: 514 ACASLSAYEQGKQVHAHLIKRQFM--SDAFAGNALVYTYAKCGSIEDAE-LAFSSLPERG 570

Query: 523 PNIWRALLSGCVLH 536
              W A++ G   H
Sbjct: 571 VVSWSAMIGGLAQH 584



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 113/389 (29%), Positives = 195/389 (50%), Gaps = 19/389 (4%)

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           +H   +K G +   S+ N ++  YS       A ++F E+     +SW+ ++  + +   
Sbjct: 26  LHANLLKSGFL--ASLRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGL 83

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
              A++ F  MR   + C+  AL  ++     + D + G Q+HA  +  G  S++ ++N+
Sbjct: 84  PRSAIQAFHGMRAEGVCCNEFALPVVLKC---VPDAQLGAQVHAMAMATGFGSDVFVANA 140

Query: 292 IIAMYSKCGDLDSSRSVFNQI-TEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDS 350
           ++AMY   G +D +R VF++  +E++ VSW  ++S YV+N    +A+  F +M       
Sbjct: 141 LVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQP 200

Query: 351 VDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIV 410
            +      ++ A      ++   Q+H +    G+ +     N L+  Y K G VD+A ++
Sbjct: 201 TE-FGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVI 259

Query: 411 FEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGL 470
           FE+M    DVVSWN +I G  +NGH   A+ L  +M  +G VP+     SIL AC  AG 
Sbjct: 260 FEKMPD-SDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGA 318

Query: 471 TNDGLVIFNQMIEENKVKPSQEHYGC-VVDLLARAGCLSDASGLAGKLLEGMGPN---IW 526
            + G  I   MI+ N    S ++ G  +VD+ A+   L DA     K+ + M      +W
Sbjct: 319 FDLGRQIHGFMIKAN--ADSDDYIGVGLVDMYAKNHFLDDAM----KVFDWMSHRDLILW 372

Query: 527 RALLSGCVLHVGRFQDAEALRSGSQKKGI 555
            AL+SGC  H GR  +A ++  G +K+G+
Sbjct: 373 NALISGCS-HGGRHDEAFSIFYGLRKEGL 400



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 141/297 (47%), Gaps = 11/297 (3%)

Query: 270 GKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQ 329
           G  LHA ++  G  + LR  N +I+ YSKC     +R VF++I +   VSW+++++ Y  
Sbjct: 23  GAHLHANLLKSGFLASLR--NHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSN 80

Query: 330 NGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS 389
           NG  R A+  F  MR E     +   L  +L     +   ++  Q+H +A   GF     
Sbjct: 81  NGLPRSAIQAFHGMRAEGV-CCNEFALPVVLKC---VPDAQLGAQVHAMAMATGFGSDVF 136

Query: 390 VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
           V N L++ Y   G +D A  VF+E G  R+ VSWN ++  Y  N     A+ ++ +M  +
Sbjct: 137 VANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWS 196

Query: 450 GEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSD 509
           G  P    +  ++NAC  +   + G  + + M+     +        +VD+  + G +  
Sbjct: 197 GIQPTEFGFSCVVNACTGSRNIDAGRQV-HAMVVRMGYEKDVFTANALVDMYVKMGRVDI 255

Query: 510 ASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFLNS 566
           AS +  K+ +    + W AL+SGCVL+     D  A+    Q K    +P +  L+S
Sbjct: 256 ASVIFEKMPDSDVVS-WNALISGCVLN---GHDHRAIELLLQMKSSGLVPNVFMLSS 308


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  242 bits (617), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 166/624 (26%), Positives = 284/624 (45%), Gaps = 125/624 (20%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+S Y K  +I  A  +FD++P++N+ SW+ ++  YS                    LP 
Sbjct: 50  LVSAYAKFDRITYARRVFDQMPQRNLYSWNTLLSSYS----------------KLACLP- 92

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKL 130
                            E+ R  H +  +               +VS N++++ +     
Sbjct: 93  -----------------EMERVFHAMPTR--------------DMVSWNSLISAYAGRGF 121

Query: 131 FQQAVLLFNFFRGSG------LVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILD 184
             Q+V  +N    +G      +  + + +L   +GCV LG +     +HG  +K G    
Sbjct: 122 LLQSVKAYNLMLYNGPFNLNRIALSTMLILASKQGCVHLGLQ-----VHGHVVKFGFQSY 176

Query: 185 VSVNNSVLDMYS------CLMD-------------------------LDAAIQIFREMEC 213
           V V + ++DMYS      C                            ++ + Q+F +M+ 
Sbjct: 177 VFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQE 236

Query: 214 KDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQL 273
           KD ISWT M+  F       +A+ +FREMR   +  D     ++++    +  L+ GKQ+
Sbjct: 237 KDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQV 296

Query: 274 HAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA 333
           HA ++    Q  + + ++++ MY KC  + S+ +VF ++  K++VSWTA++ GY QNG +
Sbjct: 297 HAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYS 356

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC 393
            EA+  F  M+    +  D  TL S++++   LA+LE   Q H  A  +G   + +V N 
Sbjct: 357 EEAVKIFCDMQNNGIEP-DDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNA 415

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           L++ Y KCG+++ ++ +F EM ++ D VSW  ++ GY   G     L L+  M   G  P
Sbjct: 416 LVTLYGKCGSIEDSHRLFSEMSYV-DEVSWTALVSGYAQFGKANETLRLFESMLAHGFKP 474

Query: 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL 513
           D  T++ +L+AC  AGL   G  IF  MI+E+++ P ++HY C++DL +RAG L +A   
Sbjct: 475 DKVTFIGVLSACSRAGLVQKGNQIFESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKF 534

Query: 514 AGKLLEGMGPNIWRALLSGCVLH---------------------------------VGRF 540
             K+        W +LLS C  H                                  G++
Sbjct: 535 INKMPFSPDAIGWASLLSSCRFHRNMEIGKWAAESLLKLEPHNTASYILLSSIYAAKGKW 594

Query: 541 QDAEALRSGSQKKGIIKIPGISFL 564
           ++   LR G + KG+ K PG S++
Sbjct: 595 EEVANLRKGMRDKGLRKEPGCSWI 618



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 132/486 (27%), Positives = 235/486 (48%), Gaps = 64/486 (13%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  + Y+ + LLS+Y K   + E E +F  +P +++VSW+ +I  Y+  GF  +S+KA++
Sbjct: 71  PQRNLYSWNTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYN 130

Query: 61  HMMLSGLLP-NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPY--- 114
            M+ +G    N   +  +L+ A+    + L   +HG +VKFG +S +F G  L + Y   
Sbjct: 131 LMLYNGPFNLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKT 190

Query: 115 -LVSC-----------------------------------------------NAIVAGFI 126
            LV C                                                A++AGF 
Sbjct: 191 GLVFCARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFT 250

Query: 127 NNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVS 186
            N L ++A+ LF   R   L  +  T  +V+  C  + +    + +H   I+     ++ 
Sbjct: 251 QNGLDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIF 310

Query: 187 VNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSR 246
           V ++++DMY     + +A  +FR+M CK+V+SWT M+  +    Y+ +A+KIF +M+ + 
Sbjct: 311 VGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNG 370

Query: 247 IICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSR 306
           I  D   L ++IS  A L  L+ G Q H + ++ GL S + +SN+++ +Y KCG ++ S 
Sbjct: 371 IEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSH 430

Query: 307 SVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGEL 366
            +F++++    VSWTA++SGY Q G A E L  F  M        D +T + +L+A    
Sbjct: 431 RLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKP-DKVTFIGVLSACSRA 489

Query: 367 AALEICLQLHGIAFEAGFPRYRSVQ-----NCLISSYSKCGNVDLAYIVFEEMGFLRDVV 421
             ++   Q+    FE+    +R +       C+I  +S+ G ++ A     +M F  D +
Sbjct: 490 GLVQKGNQI----FESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKMPFSPDAI 545

Query: 422 SWNTII 427
            W +++
Sbjct: 546 GWASLL 551



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 96/413 (23%), Positives = 192/413 (46%), Gaps = 44/413 (10%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           YN+  L++   +  +I+++  LF ++ EK+ +SW+ +I G++ NG   +++  F  M L 
Sbjct: 211 YNT--LIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLE 268

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPY--------- 114
            L  + +T   VL A  G+  L+  + +H  +++   + ++F G  L + Y         
Sbjct: 269 NLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSA 328

Query: 115 -----------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
                      +VS  A++ G+  N   ++AV +F   + +G+ P+  T+ +VI  C  L
Sbjct: 329 ETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANL 388

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
            S       H   +  GLI  ++V+N+++ +Y     ++ + ++F EM   D +SWT ++
Sbjct: 389 ASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALV 448

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
             +  F  A + L++F  M       D V  + ++S  +  G +++G Q+   ++     
Sbjct: 449 SGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFESMI----- 503

Query: 284 SELRL------SNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISG---YVQNGCA 333
            E R+         +I ++S+ G L+ +R   N++      + W +++S    +      
Sbjct: 504 KEHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASLLSSCRFHRNMEIG 563

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASG---ELAALEICLQLHGIAFEAG 383
           + A    +K+    T S   I L SI  A G   E+A L   ++  G+  E G
Sbjct: 564 KWAAESLLKLEPHNTASY--ILLSSIYAAKGKWEEVANLRKGMRDKGLRKEPG 614



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 119/245 (48%), Gaps = 10/245 (4%)

Query: 254 LLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT 313
           L NL+S  A    +   +++  Q+     Q  L   N++++ YSK   L     VF+ + 
Sbjct: 47  LNNLVSAYAKFDRITYARRVFDQMP----QRNLYSWNTLLSSYSKLACLPEMERVFHAMP 102

Query: 314 EKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICL 373
            + +VSW ++IS Y   G   +++  +  M      +++ I L ++L  + +   + + L
Sbjct: 103 TRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALSTMLILASKQGCVHLGL 162

Query: 374 QLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVN 433
           Q+HG   + GF  Y  V + L+  YSK G V  A   F+EM   ++VV +NT+I G    
Sbjct: 163 QVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMP-EKNVVMYNTLIAGLMRC 221

Query: 434 GHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEH 493
              E +  L++ M E     DS ++ +++      GL  + + +F +M  EN ++  Q  
Sbjct: 222 SRIEDSRQLFYDMQEK----DSISWTAMIAGFTQNGLDREAIDLFREMRLEN-LEMDQYT 276

Query: 494 YGCVV 498
           +G V+
Sbjct: 277 FGSVL 281


>gi|297612086|ref|NP_001068171.2| Os11g0587100 [Oryza sativa Japonica Group]
 gi|77551664|gb|ABA94461.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|125577745|gb|EAZ18967.1| hypothetical protein OsJ_34502 [Oryza sativa Japonica Group]
 gi|255680217|dbj|BAF28534.2| Os11g0587100 [Oryza sativa Japonica Group]
          Length = 677

 Score =  242 bits (617), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 163/542 (30%), Positives = 270/542 (49%), Gaps = 37/542 (6%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEI-----PEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           Y +S L+S YF+ G    A N+FD       P+K ++ ++ ++ GY   G    ++  F 
Sbjct: 50  YVASLLVSRYFRLGDAGAARNVFDAAATAAAPQKALL-YNAMLRGYLAGGLPRMAVGIFG 108

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL-------------- 106
            M  +  LP+  T    + A A     E+   I       G  SDL              
Sbjct: 109 EMAAAACLPDRHTYHLAVAACARASEFEVGWRIGAEAAAKGFASDLLVATALIGMYAEAG 168

Query: 107 --------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLV-PNAVTMLTVI 157
                   F+G+     V+ NA++AG+      ++ V LF   R   +V P   T++T++
Sbjct: 169 DMGAARKVFDGMPQRDAVAWNAVIAGYARGGHLREVVELFMRMRSVDVVLPTEATLVTLV 228

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
            G    GS     ++H + IKLG  L++ V+N++LD+Y     L  A+ +FR+M  KD +
Sbjct: 229 SGYAGFGSWEGRGMMHTIVIKLGFQLNLFVSNALLDLYVEFGCLREAVMLFRQMAVKDSV 288

Query: 218 SWTRMMGLFVDFEYAGDALKIFREM-RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQ 276
           +W+ M+G  V       ALK+FR M   S ++     LLN+I   A LG+ + GK +   
Sbjct: 289 TWSAMIGGLVRNGRPDSALKLFRWMVTNSTVLVTRSILLNVIMACAELGEWREGKWVEEN 348

Query: 277 VVLGG---LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE--KSLVSWTAIISGYVQNG 331
            V       + +  +  ++I MY+KCG LDSS S+   + E    + +W A+I G  + G
Sbjct: 349 YVCCNGFEFKRDPSVVTALIYMYAKCGMLDSSVSLLYGVAEVRDDVFAWNAMIKGCGELG 408

Query: 332 CAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ 391
              +A+   ++M++   D  D+IT + IL     + +L+  ++ H      GF   R++ 
Sbjct: 409 LVEKAVGFVVEMQKIGVDP-DAITYLEILPMISSIPSLKTGMEAHAQIVRRGFLNERAIA 467

Query: 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE 451
           N L+S Y +CG++  +  VF  +  ++DV+SW +++  Y  NGH    + LY  M +T  
Sbjct: 468 NSLVSMYGRCGSLRHSIEVFSRI-VVKDVISWTSMMQVYAWNGHVNEVVKLYEVMKKTET 526

Query: 452 VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDAS 511
            P+  T+L++L+AC + GL  +G+ +   M E+  +KP  EH  CVVD+L RAG L+DA 
Sbjct: 527 EPNHYTFLAVLSACKNTGLVEEGMELIKYMQEKCGLKPEIEHISCVVDMLCRAGRLTDAY 586

Query: 512 GL 513
            L
Sbjct: 587 HL 588



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 172/374 (45%), Gaps = 19/374 (5%)

Query: 173 HGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC----KDVISWTRMMGLFVD 228
           H L +  GL  +  V + ++  Y  L D  AA  +F         +  + +  M+  ++ 
Sbjct: 37  HALAVVAGLASNGYVASLLVSRYFRLGDAGAARNVFDAAATAAAPQKALLYNAMLRGYLA 96

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
                 A+ IF EM  +  + D       ++  A   + + G ++ A+    G  S+L +
Sbjct: 97  GGLPRMAVGIFGEMAAAACLPDRHTYHLAVAACARASEFEVGWRIGAEAAAKGFASDLLV 156

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
           + ++I MY++ GD+ ++R VF+ + ++  V+W A+I+GY + G  RE +  F++MR    
Sbjct: 157 ATALIGMYAEAGDMGAARKVFDGMPQRDAVAWNAVIAGYARGGHLREVVELFMRMRSVDV 216

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
                 TLV++++      + E    +H I  + GF     V N L+  Y + G +  A 
Sbjct: 217 VLPTEATLVTLVSGYAGFGSWEGRGMMHTIVIKLGFQLNLFVSNALLDLYVEFGCLREAV 276

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM-TETGEVPDSSTYLSILNACGH 467
           ++F +M  ++D V+W+ +I G   NG  ++AL L+  M T +  +   S  L+++ AC  
Sbjct: 277 MLFRQMA-VKDSVTWSAMIGGLVRNGRPDSALKLFRWMVTNSTVLVTRSILLNVIMACAE 335

Query: 468 AGLTNDGLVIFNQMIEENKV-------KPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
            G   +G     + +EEN V       K        ++ + A+ G L  +  L   + E 
Sbjct: 336 LGEWREG-----KWVEENYVCCNGFEFKRDPSVVTALIYMYAKCGMLDSSVSLLYGVAEV 390

Query: 521 MGPNI-WRALLSGC 533
                 W A++ GC
Sbjct: 391 RDDVFAWNAMIKGC 404


>gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
          Length = 929

 Score =  242 bits (617), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 173/625 (27%), Positives = 296/625 (47%), Gaps = 83/625 (13%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           +L  + K G++  A   F+EI  K+V  W+I++ GY+  G  +K++K  S M LSG+ P+
Sbjct: 231 ILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPD 290

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKN--PYLVSCNAIVAGFINN 128
             T   ++   A     E A        K+ LE     GLK+  P +VS  A++AG   N
Sbjct: 291 QVTWNAIISGYAQSGQFEEAS-------KYFLE---MGGLKDFKPNVVSWTALIAGSEQN 340

Query: 129 KLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLG-LILDVSV 187
               +A+ +F      G+ PN++T+ + +  C  L        IHG  IK+  L  D+ V
Sbjct: 341 GYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLV 400

Query: 188 NNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM------------------------ 223
            NS++D Y+    ++ A + F  ++  D++SW  M+                        
Sbjct: 401 GNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGI 460

Query: 224 --------GLFVDFEYAGD---ALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQ 272
                   GL   F   GD   AL+ F+ M    +  +T  +   ++    + +LK GK+
Sbjct: 461 EPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKE 520

Query: 273 LHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC 332
           +H  V+   ++    + +++I+MYS C  L+ + SVF++++ + +V W +IIS   Q+G 
Sbjct: 521 IHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGR 580

Query: 333 AREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN 392
           +  AL+   +M     + V+++T+VS L A  +LAAL    ++H      G      + N
Sbjct: 581 SVNALDLLREMNLSNVE-VNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILN 639

Query: 393 CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV 452
            LI  Y +CG++  +  +F+ M   RD+VSWN +I  YG++G G  A+ L+      G  
Sbjct: 640 SLIDMYGRCGSIQKSRRIFDLMP-QRDLVSWNVMISVYGMHGFGMDAVNLFQXFRTMGLK 698

Query: 453 PDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASG 512
           P+  T+ ++L+AC H+GL  +G   F  M  E  + P+ E Y C+VDLL+RAG  ++   
Sbjct: 699 PNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLE 758

Query: 513 LAGKLLEGMGPNIWRALLSGCVLH---------------------------------VGR 539
              K+       +W +LL  C +H                                  GR
Sbjct: 759 FIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGR 818

Query: 540 FQDAEALRSGSQKKGIIKIPGISFL 564
           ++DA  +R   +++G+ K PG S++
Sbjct: 819 WEDAAKIRCLMKERGVTKPPGCSWI 843



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 136/554 (24%), Positives = 238/554 (42%), Gaps = 74/554 (13%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIP-----EKNVVSWSIVIHGYSINGFHEKSMKA 58
           D    + ++S Y +SG+ +EA   F E+      + NVVSW+ +I G   NG+  +++  
Sbjct: 290 DQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSV 349

Query: 59  FSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKF-GLESDLFEG-------- 109
           F  M+L G+ PNS T+   + A   L  L   R IHG  +K   L+SDL  G        
Sbjct: 350 FRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYA 409

Query: 110 --------------LKNPYLVSCNAIVAGFINNKLFQQAVLL------------------ 137
                         +K   LVS NA++AG+      ++A+ L                  
Sbjct: 410 KCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNG 469

Query: 138 -----------------FNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLG 180
                            F      G+ PN  T+   +  C  + +  L + IHG  ++  
Sbjct: 470 LVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNH 529

Query: 181 LILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFR 240
           + L   V ++++ MYS    L+ A  +F E+  +DV+ W  ++        + +AL + R
Sbjct: 530 IELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLR 589

Query: 241 EMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCG 300
           EM  S +  +TV +++ +   + L  L++GK++H  ++  GL +   + NS+I MY +CG
Sbjct: 590 EMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCG 649

Query: 301 DLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSIL 360
            +  SR +F+ + ++ LVSW  +IS Y  +G   +A+N F   R       + IT  ++L
Sbjct: 650 SIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQXFRTMGLKP-NHITFTNLL 708

Query: 361 TASGELAALEICLQLHGI-----AFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMG 415
           +A      +E   +   +     A +    +Y     C++   S+ G  +      E+M 
Sbjct: 709 SACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYA----CMVDLLSRAGQFNETLEFIEKMP 764

Query: 416 FLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGL 475
           F  +   W +++    ++ + + A      + E  E   S  Y+ + N    AG   D  
Sbjct: 765 FEPNAAVWGSLLGACRIHCNPDLAEYAARYLFEL-EPQSSGNYVLMANIYSAAGRWEDAA 823

Query: 476 VIFNQMIEENKVKP 489
            I   M E    KP
Sbjct: 824 KIRCLMKERGVTKP 837



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 127/533 (23%), Positives = 230/533 (43%), Gaps = 90/533 (16%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           S+LL  Y ++G +++A  +FD++ E+NV SW+ ++  Y   G +E+++K F  M+  G+ 
Sbjct: 128 SRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVR 187

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------L 106
           P+ F    V  A + L+N  + + ++  M+  G E +                       
Sbjct: 188 PDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRF 247

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           FE ++   +   N +V+G+ +   F++A+   +  + SG+ P+ VT   +I G    G  
Sbjct: 248 FEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQ- 306

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
              E      +++G + D   N                           V+SWT ++   
Sbjct: 307 --FEEASKYFLEMGGLKDFKPN---------------------------VVSWTALIAGS 337

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV-LGGLQSE 285
               Y  +AL +FR+M    +  +++ + + +S    L  L+ G+++H   + +  L S+
Sbjct: 338 EQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSD 397

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGY------------------ 327
           L + NS++  Y+KC  ++ +R  F  I +  LVSW A+++GY                  
Sbjct: 398 LLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKF 457

Query: 328 -----------------VQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALE 370
                             Q G  + AL  F +M     D  ++ T+   L A G++  L+
Sbjct: 458 QGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDP-NTTTISGALAACGQVRNLK 516

Query: 371 ICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGY 430
           +  ++HG            V + LIS YS C ++++A  VF E+   RDVV WN+II   
Sbjct: 517 LGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELS-TRDVVVWNSIISAC 575

Query: 431 GVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIE 483
             +G    AL L  +M  +    ++ T +S L AC        G  I   +I 
Sbjct: 576 AQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIR 628



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 95/405 (23%), Positives = 176/405 (43%), Gaps = 42/405 (10%)

Query: 155 TVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
           ++++ C  L +  L   +H   +  G+ +   + + +L++Y     ++ A ++F +M  +
Sbjct: 94  SILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSER 153

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
           +V SWT +M ++       + +K+F  M    +  D      +    + L + + GK ++
Sbjct: 154 NVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVY 213

Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
             ++  G +    +  SI+ M+ KCG +D +R  F +I  K +  W  ++SGY   G  +
Sbjct: 214 DYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFK 273

Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
           +AL     M+                              L G+  +      +   N +
Sbjct: 274 KALKCISDMK------------------------------LSGVKPD------QVTWNAI 297

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRD----VVSWNTIIYGYGVNGHGETALALYHKMTETG 450
           IS Y++ G  + A   F EMG L+D    VVSW  +I G   NG+   AL+++ KM   G
Sbjct: 298 ISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEG 357

Query: 451 EVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
             P+S T  S ++AC +  L   G  I    I+  ++         +VD  A+   +  A
Sbjct: 358 VKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVA 417

Query: 511 SGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGI 555
               G +++      W A+L+G  L  G  ++A  L S  + +GI
Sbjct: 418 RRKFG-MIKQTDLVSWNAMLAGYALR-GSHEEAIELLSEMKFQGI 460


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  242 bits (617), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 157/531 (29%), Positives = 273/531 (51%), Gaps = 31/531 (5%)

Query: 35   NVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIH 94
            +V+ W+  +  +   G   +++  F  M+ S +  +  T V +L   AGL  LEL + IH
Sbjct: 899  DVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIH 958

Query: 95   GLMVKFGLES----------------------DLFEGLKNPYLVSCNAIVAGFINNKLFQ 132
            G++++ GL+                        +F  +    L+S N +++G   + L +
Sbjct: 959  GIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEE 1018

Query: 133  QAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL-GSRALCELIHGLTIKLGLILDVSVNNSV 191
             +V +F       L+P+  T+ +V+R C +L G   L   IH   +K G++LD  V+ ++
Sbjct: 1019 CSVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTAL 1078

Query: 192  LDMYSCLMDLDAAIQIFREMECKDVISWTRMM-GLFVDFEYAGDALKIFREMRKSRIICD 250
            +D+YS    ++ A  +F   +  D+ SW  +M G  V  ++   AL+++  M++S    D
Sbjct: 1079 IDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFP-KALRLYILMQESGERSD 1137

Query: 251  TVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFN 310
             + L+N       L  LK+GKQ+HA VV  G   +L +++ ++ MY KCG+++S+R VF+
Sbjct: 1138 QITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFS 1197

Query: 311  QITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALE 370
            +I     V+WT +ISG V+NG    AL  + +MR  K    D  T  +++ A   L ALE
Sbjct: 1198 EIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQP-DEYTFATLVKACSLLTALE 1256

Query: 371  ICLQLHG--IAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIY 428
               Q+H   +     F  +  V   L+  Y+KCGN++ A  +F+     R + SWN +I 
Sbjct: 1257 QGRQIHANIVKLNCAFDPF--VMTSLVDMYAKCGNIEDARGLFKRTN-TRRIASWNAMIV 1313

Query: 429  GYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVK 488
            G   +G+ + AL  +  M   G +PD  T++ +L+AC H+GL ++    F  M +   ++
Sbjct: 1314 GLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIE 1373

Query: 489  PSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGR 539
            P  EHY C+VD L+RAG + +A  +   +      +++R LL+ C + V R
Sbjct: 1374 PEIEHYSCLVDALSRAGRIEEAEKVISSMPFEASASMYRTLLNACRVQVDR 1424



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 129/477 (27%), Positives = 234/477 (49%), Gaps = 26/477 (5%)

Query: 11   LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
            L++ Y K+G +  A ++F ++ E +++SW+ +I G +++G  E S+  F H++   LLP+
Sbjct: 976  LINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPD 1035

Query: 71   SFTMVGVLVAAAGLQN-LELARSIHGLMVKFGLESDLF--EGLKNPY------------- 114
             FT+  VL A + L+    LA  IH   +K G+  D F    L + Y             
Sbjct: 1036 QFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAEFLF 1095

Query: 115  -------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRA 167
                   L S NAI+ G+I +  F +A+ L+   + SG   + +T++   +    L    
Sbjct: 1096 VNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKAAGGLVGLK 1155

Query: 168  LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
              + IH + +K G  LD+ V + VLDMY    ++++A ++F E+   D ++WT M+   V
Sbjct: 1156 QGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGCV 1215

Query: 228  DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
            +      AL  + +MR S++  D      L+   ++L  L++G+Q+HA +V      +  
Sbjct: 1216 ENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFDPF 1275

Query: 288  LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
            +  S++ MY+KCG+++ +R +F +   + + SW A+I G  Q+G A+EAL QF K  + +
Sbjct: 1276 VMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKEAL-QFFKYMKSR 1334

Query: 348  TDSVDSITLVSILTASGELAAL-EICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
                D +T + +L+A      + E     + +    G        +CL+ + S+ G ++ 
Sbjct: 1335 GVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDALSRAGRIEE 1394

Query: 407  AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
            A  V   M F      + T++    V    ET   +  K+    E  DS+ Y+ + N
Sbjct: 1395 AEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLAL-EPSDSAAYVLLSN 1450



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 161/573 (28%), Positives = 256/573 (44%), Gaps = 89/573 (15%)

Query: 4    DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKN--VVSWSIVIHGY------SINGFHEKS 55
            D + ++ L++ Y K G +  A  LFD  P+ N  +V+W+ ++         S +GFH   
Sbjct: 690  DRFVTNNLITMYAKCGSLSSARKLFDTTPDTNRDLVTWNAILSALAAHADKSHDGFH--- 746

Query: 56   MKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------- 105
               F  +  S +     T+  V        +   + S+HG  VK GL+ D          
Sbjct: 747  --LFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASESLHGYAVKIGLQWDVFVAGALVNI 804

Query: 106  ------------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTM 153
                        LF+G+    +V  N ++  +++  L  +A+LLF+ F  +G  P+ VT+
Sbjct: 805  YAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRTGFRPDDVTL 864

Query: 154  LTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC 213
             T+ R  V    + + EL         L            MY    D D +         
Sbjct: 865  RTLSR--VVKCKKNILELKQFKAYATKLF-----------MY----DDDGS--------- 898

Query: 214  KDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQL 273
             DVI W + +  F+    A +A+  F +M  SR+ CD +  + +++V A L  L+ GKQ+
Sbjct: 899  -DVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQI 957

Query: 274  HAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA 333
            H  V+  GL   + + N +I MY K G +  +RSVF Q+ E  L+SW  +ISG   +G  
Sbjct: 958  HGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLE 1017

Query: 334  REALNQFIKMRQEKTDSV--DSITLVSILTASGEL-AALEICLQLHGIAFEAGFPRYRSV 390
              ++  F+ + +   DS+  D  T+ S+L A   L     +  Q+H  A +AG      V
Sbjct: 1018 ECSVGMFVHLLR---DSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFV 1074

Query: 391  QNCLISSYSKCGNVDLAYIVF-EEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
               LI  YSK G ++ A  +F  + GF  D+ SWN I++GY V+G    AL LY  M E+
Sbjct: 1075 STALIDVYSKRGKMEEAEFLFVNQDGF--DLASWNAIMHGYIVSGDFPKALRLYILMQES 1132

Query: 450  GEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLS- 508
            GE  D    ++++NA   AG    GLV   Q  + + V   +   G  +DL   +G L  
Sbjct: 1133 GERSDQ---ITLVNAAKAAG----GLVGLKQGKQIHAVVVKR---GFNLDLFVTSGVLDM 1182

Query: 509  -----DASGLAGKLLEGMGPN--IWRALLSGCV 534
                 +         E   P+   W  ++SGCV
Sbjct: 1183 YLKCGEMESARRVFSEIPSPDDVAWTTMISGCV 1215



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 158/333 (47%), Gaps = 23/333 (6%)

Query: 3    IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
            +D + S+ L+  Y K GK++EAE LF      ++ SW+ ++HGY ++G   K+++ +  M
Sbjct: 1070 LDSFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILM 1129

Query: 63   MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPYL----- 115
              SG   +  T+V    AA GL  L+  + IH ++VK G   DLF   G+ + YL     
Sbjct: 1130 QESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEM 1189

Query: 116  ---------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                           V+   +++G + N   + A+  ++  R S + P+  T  T+++ C
Sbjct: 1190 ESARRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKAC 1249

Query: 161  VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
              L +      IH   +KL    D  V  S++DMY+   +++ A  +F+    + + SW 
Sbjct: 1250 SLLTALEQGRQIHANIVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWN 1309

Query: 221  RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG-KQLHAQVVL 279
             M+        A +AL+ F+ M+   ++ D V  + ++S  +  G +    +  ++    
Sbjct: 1310 AMIVGLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKN 1369

Query: 280  GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQI 312
             G++ E+   + ++   S+ G ++ +  V + +
Sbjct: 1370 YGIEPEIEHYSCLVDALSRAGRIEEAEKVISSM 1402



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 92/194 (47%), Gaps = 3/194 (1%)

Query: 266 DLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQI--TEKSLVSWTAI 323
           DL  GK+ HA+++  G   +  ++N++I MY+KCG L S+R +F+    T + LV+W AI
Sbjct: 671 DLSLGKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDTNRDLVTWNAI 730

Query: 324 ISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG 383
           +S    +           ++ +    S    TL  +       A+      LHG A + G
Sbjct: 731 LSALAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASESLHGYAVKIG 790

Query: 384 FPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALY 443
                 V   L++ Y+K G +  A ++F+ M  +RDVV WN ++  Y        A+ L+
Sbjct: 791 LQWDVFVAGALVNIYAKFGLIREARVLFDGMA-VRDVVLWNVMMKAYVDTCLEYEAMLLF 849

Query: 444 HKMTETGEVPDSST 457
            +   TG  PD  T
Sbjct: 850 SEFHRTGFRPDDVT 863


>gi|356521639|ref|XP_003529461.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial-like [Glycine max]
          Length = 699

 Score =  242 bits (617), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 168/557 (30%), Positives = 288/557 (51%), Gaps = 35/557 (6%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS-GLLPNSFT 73
           Y   G+++ A  +F+ +P +++  + ++I  Y +N      +  +  M LS    P+ + 
Sbjct: 75  YASFGQLRHARKIFNHLPTRDLYCFKVMIRAYFLNDTPSGVVSLYRLMRLSLHPTPHDYV 134

Query: 74  MVGVLV-AAAGLQNLELARSIHGLMVKFGLESDLF-----------------------EG 109
           +  ++  + A  ++ +     H   VK  L SD F                       E 
Sbjct: 135 LFSIVFKSCAESRDFQTLTITHCHFVK-SLPSDSFVLTCLVDAYAKFARVDEATRAFDEI 193

Query: 110 LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALC 169
            +N  +VS  +++  ++ N   ++ + LFN  R + +  N  T+ +++  C  L      
Sbjct: 194 HENDDVVSWTSMIVAYVQNDCAREGLTLFNRMREAFVDGNEFTVGSLVSACTKLNWLHQG 253

Query: 170 ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC----KDVISWTRMMGL 225
           + +HG  IK G+ ++  +  S+L+MY    ++  A ++F E       +D++SWT M+  
Sbjct: 254 KWVHGFVIKNGICVNSYLTTSLLNMYVKCGNIQDACKVFDESSSSSYDRDLVSWTAMIVG 313

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +    Y   AL++F++ + S I+ ++V + +L+S  A LG+   GK LH   V  GL   
Sbjct: 314 YSQRGYPHLALELFKDKKWSGILPNSVTVSSLLSSCAQLGNSVMGKLLHGLAVKCGLDDH 373

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
             + N+++ MY+KCG +  +R VF  + EK +VSW +IISG+VQ+G A EALN F +M  
Sbjct: 374 -PVRNALVDMYAKCGVVSDARCVFEAMLEKDVVSWNSIISGFVQSGEAYEALNLFRRMGL 432

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYR-SVQNCLISSYSKCGNV 404
           E   S D++T+V IL+A   L  L +   +HG+A + G       V   L++ Y+KCG+ 
Sbjct: 433 ELF-SPDAVTVVGILSACASLGMLHLGCSVHGLALKDGLVVSSIYVGTALLNFYAKCGDA 491

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
             A +VF+ MG  ++ V+W  +I GYG+ G G  +L L+  M E    P+   + +IL A
Sbjct: 492 RAARMVFDSMG-EKNAVTWGAMIGGYGMQGDGNGSLTLFRDMLEELVEPNEVVFTTILAA 550

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C H+G+  +G  +FN M  E    PS +HY C+VD+LARAG L +A     ++      +
Sbjct: 551 CSHSGMVGEGSRLFNLMCGELNFVPSMKHYACMVDMLARAGNLEEALDFIERMPVQPSVS 610

Query: 525 IWRALLSGCVLHVGRFQ 541
           ++ A L GC LH  RF+
Sbjct: 611 VFGAFLHGCGLH-SRFE 626



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 138/490 (28%), Positives = 231/490 (47%), Gaps = 35/490 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKN-VVSWSIVIHGYSINGFHEKSMKAFSHM 62
           D +  + L+  Y K  ++ EA   FDEI E + VVSW+ +I  Y  N    + +  F+ M
Sbjct: 166 DSFVLTCLVDAYAKFARVDEATRAFDEIHENDDVVSWTSMIVAYVQNDCAREGLTLFNRM 225

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL--ESDLFEGLKNPY------ 114
             + +  N FT+  ++ A   L  L   + +HG ++K G+   S L   L N Y      
Sbjct: 226 REAFVDGNEFTVGSLVSACTKLNWLHQGKWVHGFVIKNGICVNSYLTTSLLNMYVKCGNI 285

Query: 115 ------------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTV 156
                             LVS  A++ G+        A+ LF   + SG++PN+VT+ ++
Sbjct: 286 QDACKVFDESSSSSYDRDLVSWTAMIVGYSQRGYPHLALELFKDKKWSGILPNSVTVSSL 345

Query: 157 IRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
           +  C  LG+  + +L+HGL +K GL  D  V N+++DMY+    +  A  +F  M  KDV
Sbjct: 346 LSSCAQLGNSVMGKLLHGLAVKCGLD-DHPVRNALVDMYAKCGVVSDARCVFEAMLEKDV 404

Query: 217 ISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQ 276
           +SW  ++  FV    A +AL +FR M       D V ++ ++S  A LG L  G  +H  
Sbjct: 405 VSWNSIISGFVQSGEAYEALNLFRRMGLELFSPDAVTVVGILSACASLGMLHLGCSVHGL 464

Query: 277 VVLGGLQ-SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
            +  GL  S + +  +++  Y+KCGD  ++R VF+ + EK+ V+W A+I GY   G    
Sbjct: 465 ALKDGLVVSSIYVGTALLNFYAKCGDARAARMVFDSMGEKNAVTWGAMIGGYGMQGDGNG 524

Query: 336 ALNQFIKMRQE--KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC 393
           +L  F  M +E  + + V   T+++  + SG +        L  +  E  F        C
Sbjct: 525 SLTLFRDMLEELVEPNEVVFTTILAACSHSGMVGEGSRLFNL--MCGELNFVPSMKHYAC 582

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           ++   ++ GN++ A    E M     V  +   ++G G++   E   A   KM E    P
Sbjct: 583 MVDMLARAGNLEEALDFIERMPVQPSVSVFGAFLHGCGLHSRFELGGAAIKKMLELH--P 640

Query: 454 DSSTYLSILN 463
           D + Y  +++
Sbjct: 641 DEACYYVLVS 650



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 110/401 (27%), Positives = 197/401 (49%), Gaps = 50/401 (12%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIP----EKNVVSWSIVIHGYSINGFHEKSMK 57
           C++ Y ++ LL+ Y K G I++A  +FDE      ++++VSW+ +I GYS  G+   +++
Sbjct: 266 CVNSYLTTSLLNMYVKCGNIQDACKVFDESSSSSYDRDLVSWTAMIVGYSQRGYPHLALE 325

Query: 58  AFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE-------------- 103
            F     SG+LPNS T+  +L + A L N  + + +HGL VK GL+              
Sbjct: 326 LFKDKKWSGILPNSVTVSSLLSSCAQLGNSVMGKLLHGLAVKCGLDDHPVRNALVDMYAK 385

Query: 104 ----SD---LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGL---VPNAVTM 153
               SD   +FE +    +VS N+I++GF+ +    +A    N FR  GL    P+AVT+
Sbjct: 386 CGVVSDARCVFEAMLEKDVVSWNSIISGFVQSG---EAYEALNLFRRMGLELFSPDAVTV 442

Query: 154 LTVIRGCVALGSRALCELIHGLTIKLGLIL-DVSVNNSVLDMYSCLMDLDAAIQIFREME 212
           + ++  C +LG   L   +HGL +K GL++  + V  ++L+ Y+   D  AA  +F  M 
Sbjct: 443 VGILSACASLGMLHLGCSVHGLALKDGLVVSSIYVGTALLNFYAKCGDARAARMVFDSMG 502

Query: 213 CKDVISWTRMMGLFVDFEYAGD---ALKIFREMRKSRIICDTVALLNLISVNAILGDLKR 269
            K+ ++W  M+G    +   GD   +L +FR+M +  +  + V    +++  +  G +  
Sbjct: 503 EKNAVTWGAMIG---GYGMQGDGNGSLTLFRDMLEELVEPNEVVFTTILAACSHSGMVGE 559

Query: 270 GKQLHAQVVLGGLQ--SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGY 327
           G +L   ++ G L     ++    ++ M ++ G+L+ +     ++  +  VS    + G 
Sbjct: 560 GSRLF-NLMCGELNFVPSMKHYACMVDMLARAGNLEEALDFIERMPVQPSVS----VFGA 614

Query: 328 VQNGCAREALNQF-----IKMRQEKTDSVDSITLVSILTAS 363
             +GC   +  +       KM +   D      LVS L AS
Sbjct: 615 FLHGCGLHSRFELGGAAIKKMLELHPDEACYYVLVSNLYAS 655



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 98/219 (44%), Gaps = 5/219 (2%)

Query: 266 DLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIIS 325
           +L   K LHA  ++ GL ++L LS  ++++Y+  G L  +R +FN +  + L  +  +I 
Sbjct: 45  NLPSLKTLHASFLIHGLTNDLLLSTKLLSLYASFGQLRHARKIFNHLPTRDLYCFKVMIR 104

Query: 326 GYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFP 385
            Y  N      ++ +  MR     +     L SI+  S   +     L +    F    P
Sbjct: 105 AYFLNDTPSGVVSLYRLMRLSLHPTPHDYVLFSIVFKSCAESRDFQTLTITHCHFVKSLP 164

Query: 386 RYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHK 445
               V  CL+ +Y+K   VD A   F+E+    DVVSW ++I  Y  N      L L+++
Sbjct: 165 SDSFVLTCLVDAYAKFARVDEATRAFDEIHENDDVVSWTSMIVAYVQNDCAREGLTLFNR 224

Query: 446 MTETGEVPDSSTYLSILNACG-----HAGLTNDGLVIFN 479
           M E     +  T  S+++AC      H G    G VI N
Sbjct: 225 MREAFVDGNEFTVGSLVSACTKLNWLHQGKWVHGFVIKN 263


>gi|224107543|ref|XP_002314516.1| predicted protein [Populus trichocarpa]
 gi|222863556|gb|EEF00687.1| predicted protein [Populus trichocarpa]
          Length = 632

 Score =  242 bits (617), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 148/463 (31%), Positives = 250/463 (53%), Gaps = 11/463 (2%)

Query: 85  QNLELARSIHGLMVKFG---LESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFF 141
           QN  LA  +      FG   L   +F+ L    +   N+++ GF+ N+ + +A   F   
Sbjct: 60  QNPFLATKLISAYAIFGVPALSRLVFDSLHFKSVYLWNSLINGFVKNRAYNEAFGWFYQM 119

Query: 142 RGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDL 201
              G++ +  T+ T+ + C  +G     +LIHG ++K G +LDV V NS++ MYS     
Sbjct: 120 CCRGVLLDDYTLATMSKVCHEIGDLNAGKLIHGKSLKTGFVLDVIVANSLMSMYSKCGGF 179

Query: 202 DAAIQIFREMECKDVISWTRMMGLFVD---FEYAGDALKIFREMRKSRIICDTVALLNLI 258
              +++F EM  ++V SW  ++  + D     +  +     ++M+   +  D   + +L+
Sbjct: 180 GECLKLFDEMPERNVGSWNVILSGYADSGDRNFDKEVSGFVKDMQIEGLKPDAFTVSSLL 239

Query: 259 SV-NAILGDLKRGKQLHAQVV----LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT 313
           ++ N  +G    G++LH  +V      G  +E+ L   +I MYS+   +D  R VF+++ 
Sbjct: 240 TLCNGHMGKRDHGRELHGFIVRIELAVGSGTEVHLGCCLIDMYSRSNRVDVGRRVFDRME 299

Query: 314 EKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICL 373
            +++ +WTA+I+G+VQNG   E L  F +M+       + ++LVS+L A   +A L    
Sbjct: 300 CRNVYAWTAMINGHVQNGALEEGLVLFHEMQVRDGVEPNKVSLVSVLPACSAVAGLTGVK 359

Query: 374 QLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVN 433
           Q+HG A    F    S+ N LI  YSKCG++D A  VFE   F RD +SW+++I GYG++
Sbjct: 360 QIHGYAIRKQFNNDVSLCNALIDMYSKCGSLDHAKQVFEFGSFRRDPISWSSMISGYGLH 419

Query: 434 GHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEH 493
           G GE A+ +Y+KM + G  PD  T + +L+AC  AGL ++GL I+   I + ++KP+ E 
Sbjct: 420 GKGEEAVFVYNKMLQLGNKPDMITIVGVLSACSRAGLVDEGLCIYKSAINKYRIKPTVEI 479

Query: 494 YGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
             CVVD+L R+G L  A      +     P++W A++S  ++H
Sbjct: 480 CACVVDMLGRSGQLGQALDYIKTMPMEPSPSVWGAVVSASIIH 522



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 118/499 (23%), Positives = 235/499 (47%), Gaps = 47/499 (9%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           +P+ ++KL+S Y   G    +  +FD +  K+V  W+ +I+G+  N  + ++   F  M 
Sbjct: 61  NPFLATKLISAYAIFGVPALSRLVFDSLHFKSVYLWNSLINGFVKNRAYNEAFGWFYQMC 120

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
             G+L + +T+  +      + +L   + IHG  +K G   D                  
Sbjct: 121 CRGVLLDDYTLATMSKVCHEIGDLNAGKLIHGKSLKTGFVLDVIVANSLMSMYSKCGGFG 180

Query: 106 ----LFEGLKNPYLVSCNAIVAGFIN--NKLFQQAVLLF-NFFRGSGLVPNAVTMLTVIR 158
               LF+ +    + S N I++G+ +  ++ F + V  F    +  GL P+A T+ +++ 
Sbjct: 181 ECLKLFDEMPERNVGSWNVILSGYADSGDRNFDKEVSGFVKDMQIEGLKPDAFTVSSLLT 240

Query: 159 GCVA-LGSRALCELIHGLTIKLGLIL----DVSVNNSVLDMYSCLMDLDAAIQIFREMEC 213
            C   +G R     +HG  +++ L +    +V +   ++DMYS    +D   ++F  MEC
Sbjct: 241 LCNGHMGKRDHGRELHGFIVRIELAVGSGTEVHLGCCLIDMYSRSNRVDVGRRVFDRMEC 300

Query: 214 KDVISWTRMMGLFVDFEYAGDALKIFREMR-KSRIICDTVALLNLISVNAILGDLKRGKQ 272
           ++V +WT M+   V      + L +F EM+ +  +  + V+L++++   + +  L   KQ
Sbjct: 301 RNVYAWTAMINGHVQNGALEEGLVLFHEMQVRDGVEPNKVSLVSVLPACSAVAGLTGVKQ 360

Query: 273 LHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISGYVQNG 331
           +H   +     +++ L N++I MYSKCG LD ++ VF   +  +  +SW+++ISGY  +G
Sbjct: 361 IHGYAIRKQFNNDVSLCNALIDMYSKCGSLDHAKQVFEFGSFRRDPISWSSMISGYGLHG 420

Query: 332 CAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALE--ICLQLHGIAFEAGFPRYR- 388
              EA+  + KM Q   +  D IT+V +L+A      ++  +C+      +++   +YR 
Sbjct: 421 KGEEAVFVYNKMLQ-LGNKPDMITIVGVLSACSRAGLVDEGLCI------YKSAINKYRI 473

Query: 389 ----SVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH 444
                +  C++    + G +  A    + M        W  ++    ++G+ E     Y 
Sbjct: 474 KPTVEICACVVDMLGRSGQLGQALDYIKTMPMEPSPSVWGAVVSASIIHGNSEMQDLAYR 533

Query: 445 KMTETGEVPDSSTYLSILN 463
            + +  E  + S Y+S+ N
Sbjct: 534 FLVQL-EPENPSNYVSLSN 551



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 172/363 (47%), Gaps = 34/363 (9%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFH--EKSMKAF- 59
           +D   ++ L+S Y K G   E   LFDE+PE+NV SW++++ GY+ +G    +K +  F 
Sbjct: 161 LDVIVANSLMSMYSKCGGFGECLKLFDEMPERNVGSWNVILSGYADSGDRNFDKEVSGFV 220

Query: 60  SHMMLSGLLPNSFTMVGVLVAAAG-LQNLELARSIHGLMVKF------GLESDL------ 106
             M + GL P++FT+  +L    G +   +  R +HG +V+       G E  L      
Sbjct: 221 KDMQIEGLKPDAFTVSSLLTLCNGHMGKRDHGRELHGFIVRIELAVGSGTEVHLGCCLID 280

Query: 107 --------------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFR-GSGLVPNAV 151
                         F+ ++   + +  A++ G + N   ++ ++LF+  +   G+ PN V
Sbjct: 281 MYSRSNRVDVGRRVFDRMECRNVYAWTAMINGHVQNGALEEGLVLFHEMQVRDGVEPNKV 340

Query: 152 TMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM 211
           ++++V+  C A+      + IHG  I+     DVS+ N+++DMYS    LD A Q+F   
Sbjct: 341 SLVSVLPACSAVAGLTGVKQIHGYAIRKQFNNDVSLCNALIDMYSKCGSLDHAKQVFEFG 400

Query: 212 EC-KDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG 270
              +D ISW+ M+  +       +A+ ++ +M +     D + ++ ++S  +  G +  G
Sbjct: 401 SFRRDPISWSSMISGYGLHGKGEEAVFVYNKMLQLGNKPDMITIVGVLSACSRAGLVDEG 460

Query: 271 KQLHAQVVLG-GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISGYV 328
             ++   +    ++  + +   ++ M  + G L  +      +  E S   W A++S  +
Sbjct: 461 LCIYKSAINKYRIKPTVEICACVVDMLGRSGQLGQALDYIKTMPMEPSPSVWGAVVSASI 520

Query: 329 QNG 331
            +G
Sbjct: 521 IHG 523



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/275 (29%), Positives = 128/275 (46%), Gaps = 10/275 (3%)

Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISG 326
           LK  +Q HA+++  G      L+  +I+ Y+  G    SR VF+ +  KS+  W ++I+G
Sbjct: 43  LKLTQQCHARILSLGFTQNPFLATKLISAYAIFGVPALSRLVFDSLHFKSVYLWNSLING 102

Query: 327 YVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPR 386
           +V+N    EA   F +M       +D  TL ++     E+  L     +HG + + GF  
Sbjct: 103 FVKNRAYNEAFGWFYQMCCRGV-LLDDYTLATMSKVCHEIGDLNAGKLIHGKSLKTGFVL 161

Query: 387 YRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGH---GETALALY 443
              V N L+S YSKCG       +F+EM   R+V SWN I+ GY  +G     +      
Sbjct: 162 DVIVANSLMSMYSKCGGFGECLKLFDEMP-ERNVGSWNVILSGYADSGDRNFDKEVSGFV 220

Query: 444 HKMTETGEVPDSSTYLSILNAC-GHAGLTNDGLVI--FNQMIEENKVKPSQEHYG-CVVD 499
             M   G  PD+ T  S+L  C GH G  + G  +  F   IE      ++ H G C++D
Sbjct: 221 KDMQIEGLKPDAFTVSSLLTLCNGHMGKRDHGRELHGFIVRIELAVGSGTEVHLGCCLID 280

Query: 500 LLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCV 534
           + +R+  + D        +E      W A+++G V
Sbjct: 281 MYSRSNRV-DVGRRVFDRMECRNVYAWTAMINGHV 314


>gi|302762388|ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
 gi|300168345|gb|EFJ34949.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
          Length = 795

 Score =  242 bits (617), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 158/553 (28%), Positives = 267/553 (48%), Gaps = 34/553 (6%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           ++++  Y K G +  A   FD I  KN  SW  ++  Y+ NG +  ++  +  M    L 
Sbjct: 62  NEIVRAYGKCGSVASARAAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRM---DLQ 118

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIH-------GLMVKFGLESDL--------------- 106
           PN      VL A A ++ LE  ++IH       GL +   LE+ L               
Sbjct: 119 PNPVVYTTVLGACASIKALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKR 178

Query: 107 -FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
            FE +    + S NA++A +  +  F++A+ L+       + P+  T  +V+  C  LG 
Sbjct: 179 LFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDM---DVEPSVRTFTSVLSACSNLGL 235

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
                 IH L    G  LD+S+ N++L MY+    LD A +IF+ +  +DV+SW+ M+  
Sbjct: 236 LDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAA 295

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           F + +   +A++ + +M+   +  +     +++   A +GDL+ G+ +H Q++  G +  
Sbjct: 296 FAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKIT 355

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           L    +++ +Y+  G LD +RS+F+QI  +    WT +I GY + G     L  + +M+ 
Sbjct: 356 LVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKN 415

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
                   I    +++A   L A     Q H      G      +   L++ YS+ GN++
Sbjct: 416 TTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFVLATSLVNMYSRWGNLE 475

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            A  VF++M   RD ++W T+I GY  +G    AL LY +M   G  P   T++ +L AC
Sbjct: 476 SARQVFDKMSS-RDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYAC 534

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN- 524
            HAGL   G  +F  +  +  + P+  HY C++DLL+RAG LSDA  L   +   + PN 
Sbjct: 535 SHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAM--PVEPND 592

Query: 525 -IWRALLSGCVLH 536
             W +LL    +H
Sbjct: 593 VTWSSLLGASRIH 605



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 117/478 (24%), Positives = 239/478 (50%), Gaps = 31/478 (6%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           LL+ Y K G +++A+ LF+ +  ++V SW+ +I  Y+ +G  E++++ +  M +    P+
Sbjct: 163 LLTMYAKCGSLEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDMDVE---PS 219

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------------FE 108
             T   VL A + L  L+  R IH L+   G E DL                      F+
Sbjct: 220 VRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQ 279

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            L    +VS +A++A F    LF +A+  ++  +  G+ PN  T  +V+  C ++G    
Sbjct: 280 RLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRA 339

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
              +H   +  G  + +    +++D+Y+    LD A  +F ++E +D   WT ++G +  
Sbjct: 340 GRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSK 399

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLN-LISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
             +    L+++REM+ +  +  T  + + +IS  A LG     +Q H+ +   G+ S+  
Sbjct: 400 QGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFV 459

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
           L+ S++ MYS+ G+L+S+R VF++++ +  ++WT +I+GY ++G    AL  + +M  E 
Sbjct: 460 LATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEG 519

Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN--CLISSYSKCGNVD 405
            +  + +T + +L A       E   QL  I+ ++ +  + ++ +  C+I   S+ G + 
Sbjct: 520 AEPSE-LTFMVVLYACSHAGLQEQGKQLF-ISIQSDYAMHPNIAHYSCIIDLLSRAGRLS 577

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
            A  +   M    + V+W++++    ++   + A     ++T+   V D ++Y+ + N
Sbjct: 578 DAEELINAMPVEPNDVTWSSLLGASRIHKDVKRATHAAGQITKLDPV-DPASYVLLSN 634



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/253 (30%), Positives = 131/253 (51%), Gaps = 11/253 (4%)

Query: 266 DLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIIS 325
           DL+  +Q+H ++  G   + + L N I+  Y KCG + S+R+ F+ I  K+  SW ++++
Sbjct: 39  DLESVRQIHDRIS-GAASANVFLGNEIVRAYGKCGSVASARAAFDAIARKNDYSWGSMLT 97

Query: 326 GYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHG-IAFEAGF 384
            Y QNG  R AL+ + +M  +     + +   ++L A   + ALE    +H  I+   G 
Sbjct: 98  AYAQNGHYRAALDLYKRMDLQP----NPVVYTTVLGACASIKALEEGKAIHSRISGTKGL 153

Query: 385 PRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH 444
                ++N L++ Y+KCG+++ A  +FE M   R V SWN +I  Y  +GH E A+ LY 
Sbjct: 154 KLDVILENSLLTMYAKCGSLEDAKRLFERMSG-RSVSSWNAMIAAYAQSGHFEEAIRLYE 212

Query: 445 KMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARA 504
            M      P   T+ S+L+AC + GL + G  I + +I     +        ++ + AR 
Sbjct: 213 DMDVE---PSVRTFTSVLSACSNLGLLDQGRKI-HALISSRGTELDLSLQNALLTMYARC 268

Query: 505 GCLSDASGLAGKL 517
            CL DA+ +  +L
Sbjct: 269 KCLDDAAKIFQRL 281



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 2/81 (2%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ L++ Y + G ++ A  +FD++  ++ ++W+ +I GY+ +G H  ++  +  M L G 
Sbjct: 461 ATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGA 520

Query: 68  LPNSFTMVGVLVAA--AGLQN 86
            P+  T + VL A   AGLQ 
Sbjct: 521 EPSELTFMVVLYACSHAGLQE 541


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  242 bits (617), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 164/577 (28%), Positives = 281/577 (48%), Gaps = 29/577 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEI-PEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           D + ++ L++ Y   G + +A  +FDE   E+N VSW+ ++  Y  N     +++ F  M
Sbjct: 41  DVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEM 100

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
           + SG+ P  F    V+ A  G +N++  R +H ++V+ G E D                 
Sbjct: 101 VWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRV 160

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +FE + +  +VS NA+++G + N    +A+ L    + SGLVPN   + ++++ C
Sbjct: 161 DIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKAC 220

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
              G+  L   IHG  IK     D  +   ++DMY+    LD A+++F  M  +D+I W 
Sbjct: 221 AGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWN 280

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++          +A  IF  +RK  +  +   L  ++   A L      +Q+HA     
Sbjct: 281 ALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKI 340

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           G   +  + N +I  Y KC  L  +  VF + +   +++ T++I+   Q      A+  F
Sbjct: 341 GFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLF 400

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
           ++M ++  +  D   L S+L A   L+A E   Q+H    +  F       N L+ +Y+K
Sbjct: 401 MEMLRKGLEP-DPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAK 459

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CG+++ A + F  +   R VVSW+ +I G   +GHG+ AL L+ +M + G  P+  T  S
Sbjct: 460 CGSIEDAELAFSSLP-ERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTS 518

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           +L AC HAGL ++    FN M E   +  ++EHY C++DLL RAG L DA  L   +   
Sbjct: 519 VLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQ 578

Query: 521 MGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIK 557
              ++W ALL    +H    +D E  +  ++K  I++
Sbjct: 579 ANASVWGALLGASRVH----KDPELGKLAAEKLFILE 611



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 137/514 (26%), Positives = 246/514 (47%), Gaps = 32/514 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + ++ L+  Y K G++  A  +F+++P+ +VVSW+ +I G  +NG   ++++    M 
Sbjct: 143 DVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMK 202

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
            SGL+PN F +  +L A AG    +L R IHG M+K   +SD                  
Sbjct: 203 SSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLD 262

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +F+ + +  L+  NA+++G  +     +A  +F   R  GL  N  T+  V++   
Sbjct: 263 DAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTA 322

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMY---SCLMDLDAAIQIFREMECKDVIS 218
           +L + +    +H L  K+G I D  V N ++D Y   SCL D   AI++F E    D+I+
Sbjct: 323 SLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSD---AIRVFEECSSGDIIA 379

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
            T M+      ++   A+K+F EM +  +  D   L +L++  A L   ++GKQ+HA ++
Sbjct: 380 VTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLI 439

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
                S+    N+++  Y+KCG ++ +   F+ + E+ +VSW+A+I G  Q+G  + AL 
Sbjct: 440 KRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALE 499

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEA-GFPRYRSVQNCLISS 397
            F +M  E  +  + IT+ S+L A      ++   +      E  G  R     +C+I  
Sbjct: 500 LFGRMVDEGINP-NHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDL 558

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
             + G +D A  +   M F  +   W  ++    V+   E       K+    E   S T
Sbjct: 559 LGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPELGKLAAEKLF-ILEPEKSGT 617

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEEN-KVKPS 490
           ++ + N    +G+ N+   +   M + N K +P+
Sbjct: 618 HVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPA 651



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 131/501 (26%), Positives = 222/501 (44%), Gaps = 36/501 (7%)

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF-------------- 107
           M   G+  N F +  VL     + + +L   +H + +  G  SD+F              
Sbjct: 1   MRAEGVCCNEFALPVVLKC---VPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGF 57

Query: 108 ---------EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                    E       VS N +++ ++ N     A+ +F     SG+ P       V+ 
Sbjct: 58  MDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVN 117

Query: 159 GCVALGSRAL--CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
            C   GSR +     +H + +++G   DV   N+++DMY  +  +D A  IF +M   DV
Sbjct: 118 ACT--GSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDV 175

Query: 217 ISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQ 276
           +SW  ++   V   +   A+++  +M+ S ++ +   L +++   A  G    G+Q+H  
Sbjct: 176 VSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGF 235

Query: 277 VVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
           ++     S+  +   ++ MY+K   LD +  VF+ ++ + L+ W A+ISG    G   EA
Sbjct: 236 MIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEA 295

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
            + F  +R+E    V+  TL ++L ++  L A     Q+H +A + GF     V N LI 
Sbjct: 296 FSIFYGLRKEGL-GVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLID 354

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
           SY KC  +  A  VFEE     D+++  ++I       HGE A+ L+ +M   G  PD  
Sbjct: 355 SYWKCSCLSDAIRVFEECS-SGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPF 413

Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYG-CVVDLLARAGCLSDASGLAG 515
              S+LNAC        G  +   +I+   +  S    G  +V   A+ G + DA  LA 
Sbjct: 414 VLSSLLNACASLSAYEQGKQVHAHLIKRQFM--SDAFAGNALVYTYAKCGSIEDAE-LAF 470

Query: 516 KLLEGMGPNIWRALLSGCVLH 536
             L   G   W A++ G   H
Sbjct: 471 SSLPERGVVSWSAMIGGLAQH 491


>gi|357495605|ref|XP_003618091.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519426|gb|AET01050.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  241 bits (616), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 169/575 (29%), Positives = 299/575 (52%), Gaps = 47/575 (8%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           YNS   L N + S + + A N+FD +  +NVV+W+ +I  +     + ++++AF++M+  
Sbjct: 159 YNS---LLNMYASCQHEYALNVFDVMRRRNVVAWNTLILSFVKMNRYPQAVEAFANMINQ 215

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG---------------LESDL---- 106
            ++P+  T V +  A + L +    +  +G M KFG               + SD+    
Sbjct: 216 SVMPSPVTFVNLFPALSKLGDSRTVKMFYGFMRKFGDQYVSDVFVVSSAILMFSDVGCMD 275

Query: 107 -----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLF-NFFRGSGLVPNAVTMLTVIRGC 160
                F+   N      N ++  ++ N    +A+ +F         V + VT+L+V+   
Sbjct: 276 YARMVFDRCLNKNTEIWNTMIVAYVQNNCPVEAIDVFIQALESEEGVCDDVTLLSVLTAV 335

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             L    L E  H   IK      + + N+V+ MYS    +D ++++F +M  +D +SW 
Sbjct: 336 SQLQQIKLAEQFHAFVIKSLPGSLIIILNAVMVMYSRCNHVDTSLKVFDKMLERDAVSWN 395

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++  FV   +  +AL +  EM+K + + D+V    L+S  + L +L  GKQ HA ++  
Sbjct: 396 TIISAFVQNGFDEEALMLVCEMQKQKFLIDSVTATALLSAASNLRNLYVGKQTHAYLIRR 455

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQ--ITEKSLVSWTAIISGYVQNGCAREALN 338
           G+Q E  + + +I MY+K G + ++  +F Q   +++   +W AII+GY QNG   +A+ 
Sbjct: 456 GIQFE-GMESYLIDMYAKSGSIRTAELLFEQNCSSDRDQATWNAIIAGYTQNGLNEKAI- 513

Query: 339 QFIKMRQEKTDSV--DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
             + ++Q    +V  +++TL SIL A   + ++ +  QLHG +      +   V   L  
Sbjct: 514 --LLLKQMLVQNVIPNAVTLASILPACSSMGSMGLARQLHGFSIRRFLEKNVYVGTSLTD 571

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
           +YSKCG +  A  VF      ++ V++ T++  YG +G G+ AL LY  M  +G  PD+ 
Sbjct: 572 TYSKCGAISYAENVFLRTP-EKNSVTYTTMMMCYGQHGMGKRALTLYDSMLRSGIRPDAV 630

Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK 516
           T+++IL+AC ++GL ++GL IF  M + +K+KPS EHY CV D+L R G + +A     +
Sbjct: 631 TFVAILSACNYSGLVDEGLQIFESMEKVHKIKPSIEHYCCVADMLGRVGRVVEAY----E 686

Query: 517 LLEGMGPN-----IWRALLSGCVLHVGRFQDAEAL 546
            ++G+G +     IW +LL  C  H G F+  +A+
Sbjct: 687 FVKGLGEDANTMEIWGSLLGSCRNH-GHFELGKAV 720



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 120/437 (27%), Positives = 206/437 (47%), Gaps = 15/437 (3%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVP--NAVTMLTVIRGCVAL 163
           L + L  P  V  N+++ GFI N L  QA+LL+   R +      +  T  + ++ C   
Sbjct: 71  LLDSLPRPSTVVWNSVIIGFICNNLPHQALLLYAKMRSNSSCSTFDPYTFSSTLKACALT 130

Query: 164 GSRALCELIHGLTIKLGLILDVS----VNNSVLDMY-SCLMDLDAAIQIFREMECKDVIS 218
                 + IH   ++     +      V NS+L+MY SC    + A+ +F  M  ++V++
Sbjct: 131 KDILTGKAIHSHFLRSHSNTNTGPSRIVYNSLLNMYASC--QHEYALNVFDVMRRRNVVA 188

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           W  ++  FV       A++ F  M    ++   V  +NL    + LGD +  K  +  + 
Sbjct: 189 WNTLILSFVKMNRYPQAVEAFANMINQSVMPSPVTFVNLFPALSKLGDSRTVKMFYGFMR 248

Query: 279 LGGLQ--SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
             G Q  S++ + +S I M+S  G +D +R VF++   K+   W  +I  YVQN C  EA
Sbjct: 249 KFGDQYVSDVFVVSSAILMFSDVGCMDYARMVFDRCLNKNTEIWNTMIVAYVQNNCPVEA 308

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
           ++ FI+  + +    D +TL+S+LTA  +L  +++  Q H    ++       + N ++ 
Sbjct: 309 IDVFIQALESEEGVCDDVTLLSVLTAVSQLQQIKLAEQFHAFVIKSLPGSLIIILNAVMV 368

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
            YS+C +VD +  VF++M   RD VSWNTII  +  NG  E AL L  +M +   + DS 
Sbjct: 369 MYSRCNHVDTSLKVFDKM-LERDAVSWNTIISAFVQNGFDEEALMLVCEMQKQKFLIDSV 427

Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL-AG 515
           T  ++L+A  +      G      +I         E Y  ++D+ A++G +  A  L   
Sbjct: 428 TATALLSAASNLRNLYVGKQTHAYLIRRGIQFEGMESY--LIDMYAKSGSIRTAELLFEQ 485

Query: 516 KLLEGMGPNIWRALLSG 532
                     W A+++G
Sbjct: 486 NCSSDRDQATWNAIIAG 502


>gi|302774170|ref|XP_002970502.1| hypothetical protein SELMODRAFT_93612 [Selaginella moellendorffii]
 gi|300162018|gb|EFJ28632.1| hypothetical protein SELMODRAFT_93612 [Selaginella moellendorffii]
          Length = 825

 Score =  241 bits (616), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 153/552 (27%), Positives = 280/552 (50%), Gaps = 31/552 (5%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L++ Y + G++++A  +F  + E+++++W+ +I  Y  +G  E+++  +  M+  G  P+
Sbjct: 242 LITMYGRCGRLEDARAIFSSMVERDIIAWNALITEYGQHGHVEEAVLLYQLMLQEGCKPD 301

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFE 108
             T V +L  + G + L   + +H  +V+ G+  +                      LFE
Sbjct: 302 KVTFVALLTMSNGPEALTDVKLVHSHIVESGVSINIALGTALVAMYSKCESLEDTRWLFE 361

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            +    ++S N +V  +  + L ++AV +  + +  G+ P+ VT + ++  C       L
Sbjct: 362 KMPQRNVISWNVMVTAYAKHGLGRKAVQITEYMQLDGVKPDNVTCVGLLNVCTGSADLKL 421

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
              +HG   +     D+ + NS+L+MY    +++ A  +F  +  ++VISWT M+  +  
Sbjct: 422 GRKVHGWIAEGRCEADLILWNSLLNMYGRCGEVEQAEMVFDGILQRNVISWTAMLTAYSR 481

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
                 AL +F  +  S +    +  L  +        L +G+ +H+  V  G  +++ L
Sbjct: 482 QNRQDMALLLFHAIHLSGVKPTCITFLEALDACVGAEALGKGRLVHSCAVQSGNDTDVSL 541

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQI-TEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
            ++++AMY +CG +  +++ F+     K+ V+W+A+I+ +VQ+G  RE L     M+Q+ 
Sbjct: 542 GSALVAMYGRCGSIRDAKACFDDTEVRKNHVTWSAMIAAFVQHGQDREGLQHLRFMQQQG 601

Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGF-PRYRSVQNCLISSYSKCGNVDL 406
            D +   T  S L+A   LA L    ++H    E  F     +V N L++ Y KCG++D 
Sbjct: 602 LD-MSPATFASTLSACSNLADLREGKRIHSYVRERRFDTEAATVTNSLVTMYGKCGSLDC 660

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           A  VFE     +D++ WN II GY  +G    A+ L+H+M + G  PD  T++ IL+ C 
Sbjct: 661 AREVFE-TSRRQDIICWNAIISGYAQHGQTRDAVELFHRMQQEGVTPDPVTFVCILSVCS 719

Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI- 525
           H GL ++G+  +  M+E   ++P+Q++Y CV+DLL RAG L +A      L  G  P I 
Sbjct: 720 HGGLLDEGVYAYASMVELG-LEPTQDNYACVIDLLGRAGKLQEAEEFIQSL--GTRPAIE 776

Query: 526 -WRALLSGCVLH 536
              +LLS C  H
Sbjct: 777 TLTSLLSSCKSH 788



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 134/578 (23%), Positives = 272/578 (47%), Gaps = 39/578 (6%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+  Y K   + +A   F+ +  KNV +W+ +I   + +  H  ++     M+L G+ P+
Sbjct: 41  LIHTYGKCHSLDDAWETFERMSYKNVYTWTAIIGVCAHHHCHSLAIILLRQMLLEGVKPD 100

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------------FE 108
           + T++  L +    Q L   + IHGL+ + G + DL                      F+
Sbjct: 101 NITLLAALTSCETSQALPAGKLIHGLIAQSGHQCDLILENALVSMYGSCGSVDDAKRVFD 160

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            +    +++  A++       L +QA  +F      G   N VT +T+++ C       +
Sbjct: 161 AMPARNVITWTAMIGAHAETSL-EQAFKVFRLMELEGFKSNFVTYVTLVQACSKPEFLEV 219

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
             ++H  +++    ++  + N+++ MY     L+ A  IF  M  +D+I+W  ++  +  
Sbjct: 220 GIILHMRSVESSSAMETPLCNALITMYGRCGRLEDARAIFSSMVERDIIAWNALITEYGQ 279

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
             +  +A+ +++ M +     D V  + L++++     L   K +H+ +V  G+   + L
Sbjct: 280 HGHVEEAVLLYQLMLQEGCKPDKVTFVALLTMSNGPEALTDVKLVHSHIVESGVSINIAL 339

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA--LNQFIKMRQE 346
             +++AMYSKC  L+ +R +F ++ +++++SW  +++ Y ++G  R+A  + +++++   
Sbjct: 340 GTALVAMYSKCESLEDTRWLFEKMPQRNVISWNVMVTAYAKHGLGRKAVQITEYMQLDGV 399

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
           K D+V  + L+++ T S   A L++  ++HG   E        + N L++ Y +CG V+ 
Sbjct: 400 KPDNVTCVGLLNVCTGS---ADLKLGRKVHGWIAEGRCEADLILWNSLLNMYGRCGEVEQ 456

Query: 407 AYIVFEEMGFL-RDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
           A +VF+  G L R+V+SW  ++  Y      + AL L+H +  +G  P   T+L  L+AC
Sbjct: 457 AEMVFD--GILQRNVISWTAMLTAYSRQNRQDMALLLFHAIHLSGVKPTCITFLEALDAC 514

Query: 466 GHAGLTNDGLVIFNQMIEE-NKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
             A     G ++ +  ++  N    S      +V +  R G + DA              
Sbjct: 515 VGAEALGKGRLVHSCAVQSGNDTDVSLG--SALVAMYGRCGSIRDAKACFDDTEVRKNHV 572

Query: 525 IWRALLSGCVLHVGRFQDAEALRSGS--QKKGIIKIPG 560
            W A+++  V H    QD E L+     Q++G+   P 
Sbjct: 573 TWSAMIAAFVQH---GQDREGLQHLRFMQQQGLDMSPA 607



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 136/573 (23%), Positives = 269/573 (46%), Gaps = 30/573 (5%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+S Y   G + +A+ +FD +P +NV++W+ +I  ++     E++ K F  M L G   N
Sbjct: 142 LVSMYGSCGSVDDAKRVFDAMPARNVITWTAMIGAHAETSL-EQAFKVFRLMELEGFKSN 200

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKF--GLESDLFEGLKNPY-------------- 114
             T V ++ A +  + LE+   +H   V+    +E+ L   L   Y              
Sbjct: 201 FVTYVTLVQACSKPEFLEVGIILHMRSVESSSAMETPLCNALITMYGRCGRLEDARAIFS 260

Query: 115 ------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
                 +++ NA++  +  +   ++AVLL+      G  P+ VT + ++   ++ G  AL
Sbjct: 261 SMVERDIIAWNALITEYGQHGHVEEAVLLYQLMLQEGCKPDKVTFVALLT--MSNGPEAL 318

Query: 169 CE--LIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
            +  L+H   ++ G+ +++++  +++ MYS    L+    +F +M  ++VISW  M+  +
Sbjct: 319 TDVKLVHSHIVESGVSINIALGTALVAMYSKCESLEDTRWLFEKMPQRNVISWNVMVTAY 378

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
                   A++I   M+   +  D V  + L++V     DLK G+++H  +  G  +++L
Sbjct: 379 AKHGLGRKAVQITEYMQLDGVKPDNVTCVGLLNVCTGSADLKLGRKVHGWIAEGRCEADL 438

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            L NS++ MY +CG+++ +  VF+ I +++++SWTA+++ Y +      AL  F  +   
Sbjct: 439 ILWNSLLNMYGRCGEVEQAEMVFDGILQRNVISWTAMLTAYSRQNRQDMALLLFHAIHLS 498

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
                  IT +  L A     AL     +H  A ++G     S+ + L++ Y +CG++  
Sbjct: 499 GVKPT-CITFLEALDACVGAEALGKGRLVHSCAVQSGNDTDVSLGSALVAMYGRCGSIRD 557

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           A   F++    ++ V+W+ +I  +  +G     L     M + G     +T+ S L+AC 
Sbjct: 558 AKACFDDTEVRKNHVTWSAMIAAFVQHGQDREGLQHLRFMQQQGLDMSPATFASTLSACS 617

Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIW 526
           +     +G  I + + E      +      +V +  + G L D +    +         W
Sbjct: 618 NLADLREGKRIHSYVRERRFDTEAATVTNSLVTMYGKCGSL-DCAREVFETSRRQDIICW 676

Query: 527 RALLSGCVLHVGRFQDAEALRSGSQKKGIIKIP 559
            A++SG   H G+ +DA  L    Q++G+   P
Sbjct: 677 NAIISGYAQH-GQTRDAVELFHRMQQEGVTPDP 708



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 115/415 (27%), Positives = 201/415 (48%), Gaps = 29/415 (6%)

Query: 75  VGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG------------------------L 110
           V +L A   L+ L++AR +H  +V+  L++ +F G                         
Sbjct: 4   VRLLQACPKLKALDIARRLHSQIVRASLDNRVFLGNHLIHTYGKCHSLDDAWETFERMSY 63

Query: 111 KNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCE 170
           KN Y  +  AI+    ++     A++L       G+ P+ +T+L  +  C    +    +
Sbjct: 64  KNVY--TWTAIIGVCAHHHCHSLAIILLRQMLLEGVKPDNITLLAALTSCETSQALPAGK 121

Query: 171 LIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFE 230
           LIHGL  + G   D+ + N+++ MY     +D A ++F  M  ++VI+WT M+G   +  
Sbjct: 122 LIHGLIAQSGHQCDLILENALVSMYGSCGSVDDAKRVFDAMPARNVITWTAMIGAHAETS 181

Query: 231 YAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSN 290
               A K+FR M       + V  + L+   +    L+ G  LH + V      E  L N
Sbjct: 182 LE-QAFKVFRLMELEGFKSNFVTYVTLVQACSKPEFLEVGIILHMRSVESSSAMETPLCN 240

Query: 291 SIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDS 350
           ++I MY +CG L+ +R++F+ + E+ +++W A+I+ Y Q+G   EA+  +  M QE    
Sbjct: 241 ALITMYGRCGRLEDARAIFSSMVERDIIAWNALITEYGQHGHVEEAVLLYQLMLQEGCKP 300

Query: 351 VDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIV 410
            D +T V++LT S    AL     +H    E+G     ++   L++ YSKC +++    +
Sbjct: 301 -DKVTFVALLTMSNGPEALTDVKLVHSHIVESGVSINIALGTALVAMYSKCESLEDTRWL 359

Query: 411 FEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
           FE+M   R+V+SWN ++  Y  +G G  A+ +   M   G  PD+ T + +LN C
Sbjct: 360 FEKMP-QRNVISWNVMVTAYAKHGLGRKAVQITEYMQLDGVKPDNVTCVGLLNVC 413



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 165/333 (49%), Gaps = 3/333 (0%)

Query: 151 VTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFRE 210
           V  + +++ C  L +  +   +H   ++  L   V + N ++  Y     LD A + F  
Sbjct: 1   VEYVRLLQACPKLKALDIARRLHSQIVRASLDNRVFLGNHLIHTYGKCHSLDDAWETFER 60

Query: 211 MECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG 270
           M  K+V +WT ++G+         A+ + R+M    +  D + LL  ++       L  G
Sbjct: 61  MSYKNVYTWTAIIGVCAHHHCHSLAIILLRQMLLEGVKPDNITLLAALTSCETSQALPAG 120

Query: 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
           K +H  +   G Q +L L N++++MY  CG +D ++ VF+ +  +++++WTA+I  + + 
Sbjct: 121 KLIHGLIAQSGHQCDLILENALVSMYGSCGSVDDAKRVFDAMPARNVITWTAMIGAHAET 180

Query: 331 GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV 390
               +A   F  M  E   S + +T V+++ A  +   LE+ + LH  + E+       +
Sbjct: 181 S-LEQAFKVFRLMELEGFKS-NFVTYVTLVQACSKPEFLEVGIILHMRSVESSSAMETPL 238

Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
            N LI+ Y +CG ++ A  +F  M   RD+++WN +I  YG +GH E A+ LY  M + G
Sbjct: 239 CNALITMYGRCGRLEDARAIFSSM-VERDIIAWNALITEYGQHGHVEEAVLLYQLMLQEG 297

Query: 451 EVPDSSTYLSILNACGHAGLTNDGLVIFNQMIE 483
             PD  T++++L          D  ++ + ++E
Sbjct: 298 CKPDKVTFVALLTMSNGPEALTDVKLVHSHIVE 330



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 93/392 (23%), Positives = 174/392 (44%), Gaps = 40/392 (10%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           +NS  LL+ Y + G++++AE +FD I ++NV+SW+ ++  YS     + ++  F  + LS
Sbjct: 441 WNS--LLNMYGRCGEVEQAEMVFDGILQRNVISWTAMLTAYSRQNRQDMALLLFHAIHLS 498

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL------------------- 106
           G+ P   T +  L A  G + L   R +H   V+ G ++D+                   
Sbjct: 499 GVKPTCITFLEALDACVGAEALGKGRLVHSCAVQSGNDTDVSLGSALVAMYGRCGSIRDA 558

Query: 107 ------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                  E  KN   V+ +A++A F+ +   ++ +    F +  GL  +  T  + +  C
Sbjct: 559 KACFDDTEVRKNH--VTWSAMIAAFVQHGQDREGLQHLRFMQQQGLDMSPATFASTLSAC 616

Query: 161 VALGSRALCELIHGLTIKLGLILD-VSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
             L      + IH    +     +  +V NS++ MY     LD A ++F     +D+I W
Sbjct: 617 SNLADLREGKRIHSYVRERRFDTEAATVTNSLVTMYGKCGSLDCAREVFETSRRQDIICW 676

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
             ++  +       DA+++F  M++  +  D V  + ++SV +  G L  G   +A +V 
Sbjct: 677 NAIISGYAQHGQTRDAVELFHRMQQEGVTPDPVTFVCILSVCSHGGLLDEGVYAYASMVE 736

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQI-TEKSLVSWTAIIS-----GYVQNGCA 333
            GL+        +I +  + G L  +      + T  ++ + T+++S     G VQ G  
Sbjct: 737 LGLEPTQDNYACVIDLLGRAGKLQEAEEFIQSLGTRPAIETLTSLLSSCKSHGDVQRG-- 794

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGE 365
           R A    ++M  +   S   + L SI +A  E
Sbjct: 795 RRAAEGIMEM--DPRSSSAHVVLSSIYSADPE 824


>gi|224066769|ref|XP_002302206.1| predicted protein [Populus trichocarpa]
 gi|222843932|gb|EEE81479.1| predicted protein [Populus trichocarpa]
          Length = 681

 Score =  241 bits (616), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 171/595 (28%), Positives = 277/595 (46%), Gaps = 86/595 (14%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           +++LL  Y + G + +A  LFDE+P +N  SW+ +I GY  +G  E+S++ F   M+S  
Sbjct: 44  ANRLLQMYTRCGSMTDAHKLFDEMPHRNCFSWNTMIEGYMKSGNKERSIRLFD--MMSNK 101

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFIN 127
              S+ +V    A AG   +E+AR              LF  + N   V  N+++  +  
Sbjct: 102 NDYSWNVVFSGFAKAG--EMEIARR-------------LFNEMPNRNGVVWNSMIHSYAR 146

Query: 128 NKLFQQAVLLFNFFRGSGL---VPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILD 184
           N   ++AV LF       L     +   + TVI  C  LG     + IH   +   + LD
Sbjct: 147 NGSPREAVRLFKELNLDPLDKSCCDTFVLATVIGACTDLGEIQCGKQIHARILIDNMELD 206

Query: 185 VSVNNSVLDMYSCLMDLDAAIQIFREMECKD----------------------------- 215
             + +S++++Y    DLD+A  +   ME  D                             
Sbjct: 207 SVLTSSLINLYGKCGDLDSAHCVLNTMEEPDDFSLSALITGYANHGRMNDARRAFYRKSN 266

Query: 216 --VISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQL 273
             V+ W  ++  +V      +A  +F +M+K  +  D   L  ++S  + L + + GKQ+
Sbjct: 267 SCVVVWNSLISGYVTNNEEIEAFLLFNDMQKKGLKVDFSTLATILSACSSLCNSQHGKQM 326

Query: 274 HAQVVLGGLQ--------------------------SELR-----LSNSIIAMYSKCGDL 302
           HA     GL                           SEL+     L NS+I +YS  G +
Sbjct: 327 HAYACKVGLICDNVVASAFIDAYSKCGSLNDACKLFSELKTYDTILLNSMITVYSNSGKI 386

Query: 303 DSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD-SVDSITLVSILT 361
           + ++ +FN +  KSL+SW ++I G  QNGC  EAL+ F  M   K D  ++   L S+++
Sbjct: 387 EDAKQIFNTMPSKSLISWNSMIVGLSQNGCPVEALDLFCMMN--KLDLRMNRFNLTSVIS 444

Query: 362 ASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVV 421
           A   +++LE+  Q+   A   G      +   L+  Y KCG +++   +F+ M    D +
Sbjct: 445 ACASISSLELGEQIFARATVVGLDSDEVISTSLVDFYCKCGFIEIGRKLFDTM-MKSDEI 503

Query: 422 SWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQM 481
           SWN+++ GY  NGHG  AL L+++M   G  P   T+  +L+AC H GL  +G   FN M
Sbjct: 504 SWNSMLMGYATNGHGLEALTLFNEMRHAGVRPTEITFTGVLSACDHCGLVKEGWRWFNIM 563

Query: 482 IEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
             +  + P  EHY C+VDL ARAGCL +A  L  ++      ++W ++L GC+ H
Sbjct: 564 QYDYHIDPGIEHYSCMVDLFARAGCLEEAMNLIKRMPFEADASMWSSVLRGCMAH 618



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 123/529 (23%), Positives = 228/529 (43%), Gaps = 99/529 (18%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           + Y+ + + S + K+G+++ A  LF+E+P +N V W+ +IH Y+ NG   ++++ F  + 
Sbjct: 102 NDYSWNVVFSGFAKAGEMEIARRLFNEMPNRNGVVWNSMIHSYARNGSPREAVRLFKELN 161

Query: 64  LSGL---LPNSFTMVGVLVAAAGLQNLELARSIHG--LMVKFGLESDLFEGLKNPY---- 114
           L  L     ++F +  V+ A   L  ++  + IH   L+    L+S L   L N Y    
Sbjct: 162 LDPLDKSCCDTFVLATVIGACTDLGEIQCGKQIHARILIDNMELDSVLTSSLINLYGKCG 221

Query: 115 -----------------------------------------------LVSCNAIVAGFIN 127
                                                          +V  N++++G++ 
Sbjct: 222 DLDSAHCVLNTMEEPDDFSLSALITGYANHGRMNDARRAFYRKSNSCVVVWNSLISGYVT 281

Query: 128 NKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSV 187
           N    +A LLFN  +  GL  +  T+ T++  C +L +    + +H    K+GLI D  V
Sbjct: 282 NNEEIEAFLLFNDMQKKGLKVDFSTLATILSACSSLCNSQHGKQMHAYACKVGLICDNVV 341

Query: 188 NNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRI 247
            ++ +D YS    L+ A ++F E++  D I    M+ ++ +     DA +IF  M    +
Sbjct: 342 ASAFIDAYSKCGSLNDACKLFSELKTYDTILLNSMITVYSNSGKIEDAKQIFNTMPSKSL 401

Query: 248 I-------------CDTVAL------------------LNLISVNAILGDLKRGKQLHAQ 276
           I             C   AL                   ++IS  A +  L+ G+Q+ A+
Sbjct: 402 ISWNSMIVGLSQNGCPVEALDLFCMMNKLDLRMNRFNLTSVISACASISSLELGEQIFAR 461

Query: 277 VVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
             + GL S+  +S S++  Y KCG ++  R +F+ + +   +SW +++ GY  NG   EA
Sbjct: 462 ATVVGLDSDEVISTSLVDFYCKCGFIEIGRKLFDTMMKSDEISWNSMLMGYATNGHGLEA 521

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIA-----FEAGFPRYRSVQ 391
           L  F +MR       + IT   +L+A      ++   +   I       + G   Y    
Sbjct: 522 LTLFNEMRHAGVRPTE-ITFTGVLSACDHCGLVKEGWRWFNIMQYDYHIDPGIEHY---- 576

Query: 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETAL 440
           +C++  +++ G ++ A  + + M F  D   W++++   G   HGE  L
Sbjct: 577 SCMVDLFARAGCLEEAMNLIKRMPFEADASMWSSVL--RGCMAHGEKDL 623



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 96/372 (25%), Positives = 153/372 (41%), Gaps = 99/372 (26%)

Query: 172 IHGLTIKLGLILD-VSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG------ 224
           +H L  K GLI   +S+ N +L MY+    +  A ++F EM  ++  SW  M+       
Sbjct: 27  LHILFFKKGLIQSTLSLANRLLQMYTRCGSMTDAHKLFDEMPHRNCFSWNTMIEGYMKSG 86

Query: 225 ----------------------LFVDFEYAGD---ALKIFREMRK--------------- 244
                                 +F  F  AG+   A ++F EM                 
Sbjct: 87  NKERSIRLFDMMSNKNDYSWNVVFSGFAKAGEMEIARRLFNEMPNRNGVVWNSMIHSYAR 146

Query: 245 -------------------SRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
                               +  CDT  L  +I     LG+++ GKQ+HA++++  ++ +
Sbjct: 147 NGSPREAVRLFKELNLDPLDKSCCDTFVLATVIGACTDLGEIQCGKQIHARILIDNMELD 206

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKS----------------------------- 316
             L++S+I +Y KCGDLDS+  V N + E                               
Sbjct: 207 SVLTSSLINLYGKCGDLDSAHCVLNTMEEPDDFSLSALITGYANHGRMNDARRAFYRKSN 266

Query: 317 --LVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQ 374
             +V W ++ISGYV N    EA   F  M Q+K   VD  TL +IL+A   L   +   Q
Sbjct: 267 SCVVVWNSLISGYVTNNEEIEAFLLFNDM-QKKGLKVDFSTLATILSACSSLCNSQHGKQ 325

Query: 375 LHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNG 434
           +H  A + G      V +  I +YSKCG+++ A  +F E+    D +  N++I  Y  +G
Sbjct: 326 MHAYACKVGLICDNVVASAFIDAYSKCGSLNDACKLFSELK-TYDTILLNSMITVYSNSG 384

Query: 435 HGETALALYHKM 446
             E A  +++ M
Sbjct: 385 KIEDAKQIFNTM 396



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 121/282 (42%), Gaps = 48/282 (17%)

Query: 267 LKRGKQLHAQVVLGGL-QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIIS 325
           + +GKQLH      GL QS L L+N ++ MY++CG +  +  +F+++  ++  SW  +I 
Sbjct: 21  IHQGKQLHILFFKKGLIQSTLSLANRLLQMYTRCGSMTDAHKLFDEMPHRNCFSWNTMIE 80

Query: 326 GYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFP 385
           GY+++G    ++  F  M  +   S                                   
Sbjct: 81  GYMKSGNKERSIRLFDMMSNKNDYS----------------------------------- 105

Query: 386 RYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHK 445
                 N + S ++K G +++A  +F EM   R+ V WN++I+ Y  NG    A+ L+ +
Sbjct: 106 -----WNVVFSGFAKAGEMEIARRLFNEMPN-RNGVVWNSMIHSYARNGSPREAVRLFKE 159

Query: 446 MT---ETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLA 502
           +          D+    +++ AC   G    G  I  +++ +N ++        +++L  
Sbjct: 160 LNLDPLDKSCCDTFVLATVIGACTDLGEIQCGKQIHARILIDN-MELDSVLTSSLINLYG 218

Query: 503 RAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAE 544
           + G L  A  +   + E    ++  AL++G   H GR  DA 
Sbjct: 219 KCGDLDSAHCVLNTMEEPDDFSL-SALITGYANH-GRMNDAR 258



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 21/181 (11%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D   S+ L+  Y K G I+    LFD + + + +SW+ ++ GY+ NG   +++  F+ M 
Sbjct: 470 DEVISTSLVDFYCKCGFIEIGRKLFDTMMKSDEISWNSMLMGYATNGHGLEALTLFNEMR 529

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLK-----NPYLVSC 118
            +G+ P   T  GVL A             H  +VK G     F  ++     +P +   
Sbjct: 530 HAGVRPTEITFTGVLSACD-----------HCGLVKEGWR--WFNIMQYDYHIDPGIEHY 576

Query: 119 NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIK 178
           + +V  F      ++A+   N  +      +A    +V+RGC+A G + L E +    I+
Sbjct: 577 SCMVDLFARAGCLEEAM---NLIKRMPFEADASMWSSVLRGCMAHGEKDLGEKVAQQIIE 633

Query: 179 L 179
           L
Sbjct: 634 L 634


>gi|449508637|ref|XP_004163369.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Cucumis sativus]
          Length = 594

 Score =  241 bits (616), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 142/431 (32%), Positives = 231/431 (53%), Gaps = 6/431 (1%)

Query: 105 DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
           +LF  +    +V+  A++ GF +   + QA  +F+    S + PNA TM +V++ C  + 
Sbjct: 64  NLFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEMLRSEVQPNAFTMSSVLKACKGMK 123

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMY--SCLMDLDAAIQIFREMECKDVISWTRM 222
           + +   L H L  K G+   V V N++LDMY  SC   +D A+ +F ++  K  +SWT +
Sbjct: 124 ALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCAT-MDDALSVFNDIPLKTAVSWTTL 182

Query: 223 MGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL 282
           +  F         L  FR+M    +  ++ +        A +     GKQ+HA V   GL
Sbjct: 183 IAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGL 242

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
             +  + NSI+ MY +C  L  ++  F ++TEK+L++W  +I+GY ++  + E+L+ F +
Sbjct: 243 HCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTLIAGYERSD-SSESLSLFFQ 301

Query: 343 MRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
           M  E     +  T  SI  A   LA L    Q+HG     GF +  ++ N LI  Y+KCG
Sbjct: 302 MGSEGYKP-NCFTFTSITAACANLAVLSCGQQVHGGIVRRGFDKNVALINSLIDMYAKCG 360

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
           ++  ++ +F +M   RD+VSW T++ GYG +G+G+ A+ L+ +M ++G  PD   ++ +L
Sbjct: 361 SISDSHKLFCDMPG-RDLVSWTTMMIGYGAHGYGKEAVKLFDEMVQSGIQPDRIVFMGVL 419

Query: 463 NACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMG 522
             C HAGL + GL  F  M+E+  + P QE Y CVVDLL RAG + +A  L   +     
Sbjct: 420 CGCSHAGLVDKGLKYFRSMLEDYNINPDQEIYRCVVDLLGRAGRVEEAFQLVENMPFEPD 479

Query: 523 PNIWRALLSGC 533
            ++W ALL  C
Sbjct: 480 ESVWGALLGAC 490



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 120/448 (26%), Positives = 208/448 (46%), Gaps = 34/448 (7%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ L+ +YF  G  +EA NLF+EIPE++VV+W+ +I G++    + ++   FS M+ S +
Sbjct: 46  ATNLIKSYFDKGLTREACNLFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEMLRSEV 105

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPYLVSC------- 118
            PN+FTM  VL A  G++ L      H L  K G++  ++    L + Y  SC       
Sbjct: 106 QPNAFTMSSVLKACKGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDAL 165

Query: 119 --------------NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
                           ++AGF +       +L F       + PN+ +     R C ++ 
Sbjct: 166 SVFNDIPLKTAVSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARACASIS 225

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
           S +  + IH    K GL  D  V NS+LDMY     L  A + F E+  K++I+W  ++ 
Sbjct: 226 SYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTLIA 285

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            + +   + ++L +F +M       +     ++ +  A L  L  G+Q+H  +V  G   
Sbjct: 286 GY-ERSDSSESLSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRRGFDK 344

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
            + L NS+I MY+KCG +  S  +F  +  + LVSWT ++ GY  +G  +EA+  F +M 
Sbjct: 345 NVALINSLIDMYAKCGSISDSHKLFCDMPGRDLVSWTTMMIGYGAHGYGKEAVKLFDEMV 404

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRY-----RSVQNCLISSYS 399
           Q      D I  + +L        ++  L+     F +    Y     + +  C++    
Sbjct: 405 QSGIQP-DRIVFMGVLCGCSHAGLVDKGLKY----FRSMLEDYNINPDQEIYRCVVDLLG 459

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTII 427
           + G V+ A+ + E M F  D   W  ++
Sbjct: 460 RAGRVEEAFQLVENMPFEPDESVWGALL 487


>gi|297604972|ref|NP_001056430.2| Os05g0581300 [Oryza sativa Japonica Group]
 gi|255676606|dbj|BAF18344.2| Os05g0581300 [Oryza sativa Japonica Group]
          Length = 704

 Score =  241 bits (616), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 168/558 (30%), Positives = 271/558 (48%), Gaps = 36/558 (6%)

Query: 12  LSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSG--LLP 69
           L    +S ++ +A  LFD +P ++ V+++ ++ G++  G    +M  FS +  S   L P
Sbjct: 8   LKQLARSSRLADAHRLFDGMPRRDEVAYATLLAGHAAAGDFPGAMALFSRLRASSPPLAP 67

Query: 70  -NSFTMVGVL---VAAAGLQNLELARSIHGLMVK----------------------FGLE 103
            + F +  V     AAA  + L  A S+H   V+                       GL 
Sbjct: 68  ADPFVLSLVFKSCAAAADARFLPHAASLHAFAVRSSAVSSVFVATALADVYAKAGCLGLA 127

Query: 104 SDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
             +F+ + +  +VS   +VA         +A+  F+  R SG+  ++      +  C   
Sbjct: 128 LKVFDEMPHKNVVSWTTLVASLTRAGRRHEALRRFSEMRASGVHCDSYAYAAALTACADA 187

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
           G  +    +H    KLGL     V N++  +Y+   D+D A+     M  +DV +WT ++
Sbjct: 188 GLLSRGREVHAFCAKLGLDSTPYVANTLATLYARCSDVDRALAAVSRMGTRDVAAWTTVI 247

Query: 224 GLFVDFEYAGDALKIF-REMRKSRIICDTVALLNLISVNAILGDLKR---GKQLHAQVVL 279
             +V    A +A++ F R +R+   +  +       +V A   D+     G+QLHAQ   
Sbjct: 248 SAYVQTGRAKEAIEAFVRMLREESSVAASPNEYTYAAVIAACADIAWVCLGEQLHAQAAR 307

Query: 280 GGLQSELRLSNSIIAMYSKC-GDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
            G      ++NS++ +Y++  G L ++ +VF +   K +VSW+AIISGY Q G A +A  
Sbjct: 308 KGFACARSVANSLVTLYTRAAGCLSAADAVFRESVVKDVVSWSAIISGYAQEGLAEDAFA 367

Query: 339 QFIKMRQEK-TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
            F +MR        +  TL S+L+     A+L+   QLH +A  AG   +  +++ LI  
Sbjct: 368 LFREMRHHSGCPRPNEFTLASLLSVCATAASLDAGRQLHTLAVAAGLEHHAMIRSALIDM 427

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           Y K G++  A IVF       DVVSW  +I GY  +GH + AL L+ +M   G  PD  T
Sbjct: 428 YGKSGSMLDADIVFSHR-VKDDVVSWTAMIVGYAEHGHSKKALELFQEMCHVGLKPDHVT 486

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL 517
           ++ +LNAC HAG    GL   N+M +   + P++EHYGCVVDLL RAG +++A  L GK+
Sbjct: 487 FIGVLNACCHAGEVELGLRYLNEMNQIYGLYPAKEHYGCVVDLLGRAGRINEAEELIGKI 546

Query: 518 LEGMGPN-IWRALLSGCV 534
                   +W +LL  C 
Sbjct: 547 AANERDGVVWTSLLRACA 564



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 125/473 (26%), Positives = 212/473 (44%), Gaps = 50/473 (10%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           + ++ L   Y K+G +  A  +FDE+P KNVVSW+ ++   +  G   ++++ FS M  S
Sbjct: 109 FVATALADVYAKAGCLGLALKVFDEMPHKNVVSWTTLVASLTRAGRRHEALRRFSEMRAS 168

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY--------- 114
           G+  +S+     L A A    L   R +H    K GL+S  +    L   Y         
Sbjct: 169 GVHCDSYAYAAALTACADAGLLSRGREVHAFCAKLGLDSTPYVANTLATLYARCSDVDRA 228

Query: 115 -----------LVSCNAIVAGFINNKLFQQAVLLF-NFFRGSGLV---PNAVTMLTVIRG 159
                      + +   +++ ++     ++A+  F    R    V   PN  T   VI  
Sbjct: 229 LAAVSRMGTRDVAAWTTVISAYVQTGRAKEAIEAFVRMLREESSVAASPNEYTYAAVIAA 288

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYS----CLMDLDAAIQIFREMECKD 215
           C  +    L E +H    + G     SV NS++ +Y+    CL   DA   +FRE   KD
Sbjct: 289 CADIAWVCLGEQLHAQAARKGFACARSVANSLVTLYTRAAGCLSAADA---VFRESVVKD 345

Query: 216 VISWTRMMGLFVDFEYAGDALKIFREMRKSR--IICDTVALLNLISVNAILGDLKRGKQL 273
           V+SW+ ++  +     A DA  +FREMR        +   L +L+SV A    L  G+QL
Sbjct: 346 VVSWSAIISGYAQEGLAEDAFALFREMRHHSGCPRPNEFTLASLLSVCATAASLDAGRQL 405

Query: 274 HAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA 333
           H   V  GL+    + +++I MY K G +  +  VF+   +  +VSWTA+I GY ++G +
Sbjct: 406 HTLAVAAGLEHHAMIRSALIDMYGKSGSMLDADIVFSHRVKDDVVSWTAMIVGYAEHGHS 465

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICL-------QLHGIAFEAGFPR 386
           ++AL  F +M        D +T + +L A      +E+ L       Q++G+     +P 
Sbjct: 466 KKALELFQEMCHVGLKP-DHVTFIGVLNACCHAGEVELGLRYLNEMNQIYGL-----YP- 518

Query: 387 YRSVQNCLISSYSKCGNVDLAYIVFEEMGF-LRDVVSWNTIIYGYGVNGHGET 438
            +    C++    + G ++ A  +  ++    RD V W +++      G  ET
Sbjct: 519 AKEHYGCVVDLLGRAGRINEAEELIGKIAANERDGVVWTSLLRACAARGEEET 571



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 77/362 (21%), Positives = 153/362 (42%), Gaps = 38/362 (10%)

Query: 5   PYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML 64
           PY ++ L + Y +   +  A      +  ++V +W+ VI  Y   G  +++++AF  M+ 
Sbjct: 209 PYVANTLATLYARCSDVDRALAAVSRMGTRDVAAWTTVISAYVQTGRAKEAIEAFVRMLR 268

Query: 65  S----GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK--FGLESDLFEGLKNPY---- 114
                   PN +T   V+ A A +  + L   +H    +  F     +   L   Y    
Sbjct: 269 EESSVAASPNEYTYAAVIAACADIAWVCLGEQLHAQAARKGFACARSVANSLVTLYTRAA 328

Query: 115 -----------------LVSCNAIVAGFINNKLFQQAVLLFNFFR-GSGLV-PNAVTMLT 155
                            +VS +AI++G+    L + A  LF   R  SG   PN  T+ +
Sbjct: 329 GCLSAADAVFRESVVKDVVSWSAIISGYAQEGLAEDAFALFREMRHHSGCPRPNEFTLAS 388

Query: 156 VIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMY---SCLMDLDAAIQIFREME 212
           ++  C    S      +H L +  GL     + ++++DMY     ++D D    +F    
Sbjct: 389 LLSVCATAASLDAGRQLHTLAVAAGLEHHAMIRSALIDMYGKSGSMLDADI---VFSHRV 445

Query: 213 CKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG-K 271
             DV+SWT M+  + +  ++  AL++F+EM    +  D V  + +++     G+++ G +
Sbjct: 446 KDDVVSWTAMIVGYAEHGHSKKALELFQEMCHVGLKPDHVTFIGVLNACCHAGEVELGLR 505

Query: 272 QLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT--EKSLVSWTAIISGYVQ 329
            L+    + GL         ++ +  + G ++ +  +  +I   E+  V WT+++     
Sbjct: 506 YLNEMNQIYGLYPAKEHYGCVVDLLGRAGRINEAEELIGKIAANERDGVVWTSLLRACAA 565

Query: 330 NG 331
            G
Sbjct: 566 RG 567


>gi|449435950|ref|XP_004135757.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Cucumis sativus]
          Length = 606

 Score =  241 bits (616), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 142/431 (32%), Positives = 231/431 (53%), Gaps = 6/431 (1%)

Query: 105 DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
           +LF  +    +V+  A++ GF +   + QA  +F+    S + PNA TM +V++ C  + 
Sbjct: 64  NLFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEMLRSEVQPNAFTMSSVLKACKGMK 123

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMY--SCLMDLDAAIQIFREMECKDVISWTRM 222
           + +   L H L  K G+   V V N++LDMY  SC   +D A+ +F ++  K  +SWT +
Sbjct: 124 ALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCAT-MDDALSVFNDIPLKTAVSWTTL 182

Query: 223 MGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL 282
           +  F         L  FR+M    +  ++ +        A +     GKQ+HA V   GL
Sbjct: 183 IAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGL 242

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
             +  + NSI+ MY +C  L  ++  F ++TEK+L++W  +I+GY ++  + E+L+ F +
Sbjct: 243 HCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTLIAGYERSD-SSESLSLFFQ 301

Query: 343 MRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
           M  E     +  T  SI  A   LA L    Q+HG     GF +  ++ N LI  Y+KCG
Sbjct: 302 MGSEGYKP-NCFTFTSITAACANLAVLSCGQQVHGGIVRRGFDKNVALINSLIDMYAKCG 360

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
           ++  ++ +F +M   RD+VSW T++ GYG +G+G+ A+ L+ +M ++G  PD   ++ +L
Sbjct: 361 SISDSHKLFCDMPG-RDLVSWTTMMIGYGAHGYGKEAVKLFDEMVQSGIQPDRIVFMGVL 419

Query: 463 NACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMG 522
             C HAGL + GL  F  M+E+  + P QE Y CVVDLL RAG + +A  L   +     
Sbjct: 420 CGCSHAGLVDKGLKYFRSMLEDYNINPDQEIYRCVVDLLGRAGRVEEAFQLVENMPFEPD 479

Query: 523 PNIWRALLSGC 533
            ++W ALL  C
Sbjct: 480 ESVWGALLGAC 490



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 120/448 (26%), Positives = 208/448 (46%), Gaps = 34/448 (7%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ L+ +YF  G  +EA NLF+EIPE++VV+W+ +I G++    + ++   FS M+ S +
Sbjct: 46  ATNLIKSYFDKGLTREACNLFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEMLRSEV 105

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPYLVSC------- 118
            PN+FTM  VL A  G++ L      H L  K G++  ++    L + Y  SC       
Sbjct: 106 QPNAFTMSSVLKACKGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDAL 165

Query: 119 --------------NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
                           ++AGF +       +L F       + PN+ +     R C ++ 
Sbjct: 166 SVFNDIPLKTAVSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARACASIS 225

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
           S +  + IH    K GL  D  V NS+LDMY     L  A + F E+  K++I+W  ++ 
Sbjct: 226 SYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTLIA 285

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            + +   + ++L +F +M       +     ++ +  A L  L  G+Q+H  +V  G   
Sbjct: 286 GY-ERSDSSESLSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRRGFDK 344

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
            + L NS+I MY+KCG +  S  +F  +  + LVSWT ++ GY  +G  +EA+  F +M 
Sbjct: 345 NVALINSLIDMYAKCGSISDSHKLFCDMPGRDLVSWTTMMIGYGAHGYGKEAVKLFDEMV 404

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRY-----RSVQNCLISSYS 399
           Q      D I  + +L        ++  L+     F +    Y     + +  C++    
Sbjct: 405 QSGIQP-DRIVFMGVLCGCSHAGLVDKGLKY----FRSMLEDYNINPDQEIYRCVVDLLG 459

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTII 427
           + G V+ A+ + E M F  D   W  ++
Sbjct: 460 RAGRVEEAFQLVENMPFEPDESVWGALL 487


>gi|302785790|ref|XP_002974666.1| hypothetical protein SELMODRAFT_101 [Selaginella moellendorffii]
 gi|300157561|gb|EFJ24186.1| hypothetical protein SELMODRAFT_101 [Selaginella moellendorffii]
          Length = 921

 Score =  241 bits (616), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 161/564 (28%), Positives = 269/564 (47%), Gaps = 54/564 (9%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           +LS + + G +     +FD +P + VV+W+ +I  Y+  G+   SM+A        + P+
Sbjct: 342 ILSLHARCGSLVGTREMFDRMPHRTVVTWTTMIAAYNQRGY---SMEALELYHCMDIEPD 398

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------------FE 108
              +  VL A + L+NLE  R++H  +     E  L                      F+
Sbjct: 399 DIALSNVLQACSRLKNLEQGRAVHSRIASRDFEPSLMVQTLLVDMYVKCGDLAEARRTFD 458

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
           G K   ++S  +++  + +    ++A+ +F+     G+ PN++T  TVI  C  L S   
Sbjct: 459 GFKARDVISWTSLITAYSHENFGREALEVFHSMELEGVEPNSITFCTVIDACSRLSSLLP 518

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
              +H   +  G I D  V N+++ MYS    +D A  +F  +  K   SW  M+     
Sbjct: 519 GRALHSRVVATGHISDEFVGNALVSMYSKFGRVDFARVVFDSIPVKRYPSWRVMLVALTQ 578

Query: 229 FEYAGDALKIFREMRKSRIICD------TVALLNLISVNAILGDLKRGKQLHAQVVLGGL 282
             ++ +AL+++     SRI  +       +    L+S  A L D+ R + +H  +     
Sbjct: 579 NGHSHEALEMY-----SRIHLEGFRPGSPIFSAALVSCTA-LEDVSRARAIHGVIKSSDF 632

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
             +L LSN ++ +Y+KCG+L+ +R VF+Q+TEK+ VSWT +I GY QNG   EAL  +  
Sbjct: 633 YPDLVLSNVLMNVYAKCGELEEARLVFDQMTEKNEVSWTTMIGGYAQNGRPAEALELYKA 692

Query: 343 MRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
           M  +     + I  V ++++  +L AL    ++H    +AG      +   L++ Y+KCG
Sbjct: 693 MDVQP----NFIAFVPVISSCADLGALVEGQRVHARLSDAGLQNNEVIVTALVNMYAKCG 748

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
            + LA   F+   +  D  +WN++   Y   GHG   L LY +M   G  P+  T LS+L
Sbjct: 749 KLGLAREFFDST-YCPDAGAWNSMATAYAQFGHGSQVLELYREMCLQGVQPNGITLLSVL 807

Query: 463 NACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSD-------ASGLAG 515
            AC H G+  +    F  M+ ++ + P+ EHY C+ DLL R+G L +       ASG +G
Sbjct: 808 VACSHMGMLEECEHRFECMVADHGIAPTSEHYSCMTDLLGRSGRLEEAEKVVKMASGESG 867

Query: 516 KLLEGMGP---NIWRALLSGCVLH 536
              E   P   + W + L  C  H
Sbjct: 868 S--EAASPVAVSAWMSFLGACKTH 889



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 131/489 (26%), Positives = 235/489 (48%), Gaps = 36/489 (7%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D    + LL+ Y K G ++E+  +F+ +  + V +W+ +I  Y  + F +++++AF  M
Sbjct: 32  VDTVLQNALLNLYAKCGDLEESRRIFEAMERRTVATWNTMITAYVQHDFFQEALEAFRRM 91

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIH------------------GLMVKFG--- 101
                 P+S T   VL A     +LE  ++IH                   L+  +G   
Sbjct: 92  ---DAPPSSITFTSVLGACCSPDDLETGKAIHRQIGASSPQIQADEILQNSLVTMYGKCG 148

Query: 102 -LE--SDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLV-PNAVTMLTVI 157
            LE    +F G++     S  A++  +  N   ++A+ +F      G V P+ +T   V+
Sbjct: 149 SLEDAERVFHGIRRKNAFSWTAMITAYAQNGYERRAIEVFGDMMSEGRVEPDPITYAGVL 208

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
             C  LG       IH L    G +    V+  ++D+Y      + A+Q+F  +  +DV+
Sbjct: 209 TACSTLGDLETGMRIHALIRSKG-VESAMVSTGLIDLYGKWGFFEDALQVFESVRDRDVV 267

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
            WT  +   V    +G AL++FR+M    +  + V    +++  + L D + GK +  ++
Sbjct: 268 IWTAFIAACVYHGQSGFALELFRKMEAEGLQANNVTFSKILAACSNLEDFETGKTIEDRI 327

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
              GL+ +  L + I++++++CG L  +R +F+++  +++V+WT +I+ Y Q G + EAL
Sbjct: 328 YTLGLEYDDVLQDGILSLHARCGSLVGTREMFDRMPHRTVVTWTTMIAAYNQRGYSMEAL 387

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
             +  M  E     D I L ++L A   L  LE    +H       F     VQ  L+  
Sbjct: 388 ELYHCMDIEP----DDIALSNVLQACSRLKNLEQGRAVHSRIASRDFEPSLMVQTLLVDM 443

Query: 398 YSKCGNVDLAYIVFEEMGF-LRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
           Y KCG++  A   F+  GF  RDV+SW ++I  Y     G  AL ++H M   G  P+S 
Sbjct: 444 YVKCGDLAEARRTFD--GFKARDVISWTSLITAYSHENFGREALEVFHSMELEGVEPNSI 501

Query: 457 TYLSILNAC 465
           T+ ++++AC
Sbjct: 502 TFCTVIDAC 510



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 119/489 (24%), Positives = 229/489 (46%), Gaps = 30/489 (6%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ L+  Y K G  ++A  +F+ + +++VV W+  I     +G    +++ F  M   GL
Sbjct: 238 STGLIDLYGKWGFFEDALQVFESVRDRDVVIWTAFIAACVYHGQSGFALELFRKMEAEGL 297

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
             N+ T   +L A + L++ E  ++I   +   GLE D                      
Sbjct: 298 QANNVTFSKILAACSNLEDFETGKTIEDRIYTLGLEYDDVLQDGILSLHARCGSLVGTRE 357

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F+ + +  +V+   ++A +       +A+ L++      + P+ + +  V++ C  L +
Sbjct: 358 MFDRMPHRTVVTWTTMIAAYNQRGYSMEALELYHCM---DIEPDDIALSNVLQACSRLKN 414

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
                 +H           + V   ++DMY    DL  A + F   + +DVISWT ++  
Sbjct: 415 LEQGRAVHSRIASRDFEPSLMVQTLLVDMYVKCGDLAEARRTFDGFKARDVISWTSLITA 474

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +    +  +AL++F  M    +  +++    +I   + L  L  G+ LH++VV  G  S+
Sbjct: 475 YSHENFGREALEVFHSMELEGVEPNSITFCTVIDACSRLSSLLPGRALHSRVVATGHISD 534

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
             + N++++MYSK G +D +R VF+ I  K   SW  ++    QNG + EAL  + ++  
Sbjct: 535 EFVGNALVSMYSKFGRVDFARVVFDSIPVKRYPSWRVMLVALTQNGHSHEALEMYSRIHL 594

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
           E       I   ++++ +  L  +     +HG+   + F     + N L++ Y+KCG ++
Sbjct: 595 EGFRPGSPIFSAALVSCTA-LEDVSRARAIHGVIKSSDFYPDLVLSNVLMNVYAKCGELE 653

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            A +VF++M   ++ VSW T+I GY  NG    AL LY  M      P+   ++ ++++C
Sbjct: 654 EARLVFDQMT-EKNEVSWTTMIGGYAQNGRPAEALELYKAMDVQ---PNFIAFVPVISSC 709

Query: 466 GHAGLTNDG 474
              G   +G
Sbjct: 710 ADLGALVEG 718



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 118/466 (25%), Positives = 216/466 (46%), Gaps = 41/466 (8%)

Query: 73  TMVGVLVAAAGLQNLELARSIH-------------------GLMVKFG-LESD--LFEGL 110
           T   VL A AGL+++E  + +H                    L  K G LE    +FE +
Sbjct: 1   TFACVLSACAGLKDMERGKKVHRRIRESVARVDTVLQNALLNLYAKCGDLEESRRIFEAM 60

Query: 111 KNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCE 170
           +   + + N ++  ++ +  FQ+A+     FR     P+++T  +V+  C +       +
Sbjct: 61  ERRTVATWNTMITAYVQHDFFQEAL---EAFRRMDAPPSSITFTSVLGACCSPDDLETGK 117

Query: 171 LIHGLTIKLG-----LILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
            IH    ++G     +  D  + NS++ MY     L+ A ++F  +  K+  SWT M+  
Sbjct: 118 AIHR---QIGASSPQIQADEILQNSLVTMYGKCGSLEDAERVFHGIRRKNAFSWTAMITA 174

Query: 226 FVDFEYAGDALKIFRE-MRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
           +    Y   A+++F + M + R+  D +    +++  + LGDL+ G ++HA +   G++S
Sbjct: 175 YAQNGYERRAIEVFGDMMSEGRVEPDPITYAGVLTACSTLGDLETGMRIHALIRSKGVES 234

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
            + +S  +I +Y K G  + +  VF  + ++ +V WTA I+  V +G +  AL  F KM 
Sbjct: 235 AM-VSTGLIDLYGKWGFFEDALQVFESVRDRDVVIWTAFIAACVYHGQSGFALELFRKME 293

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
            E   + +++T   IL A   L   E    +    +  G      +Q+ ++S +++CG++
Sbjct: 294 AEGLQA-NNVTFSKILAACSNLEDFETGKTIEDRIYTLGLEYDDVLQDGILSLHARCGSL 352

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
                +F+ M   R VV+W T+I  Y   G+   AL LYH M      PD     ++L A
Sbjct: 353 VGTREMFDRMPH-RTVVTWTTMIAAYNQRGYSMEALELYHCMDIE---PDDIALSNVLQA 408

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
           C        G  + ++ I     +PS      +VD+  + G L++A
Sbjct: 409 CSRLKNLEQGRAVHSR-IASRDFEPSLMVQTLLVDMYVKCGDLAEA 453



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 87/288 (30%), Positives = 146/288 (50%), Gaps = 21/288 (7%)

Query: 257 LISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKS 316
           ++S  A L D++RGK++H ++     + +  L N+++ +Y+KCGDL+ SR +F  +  ++
Sbjct: 5   VLSACAGLKDMERGKKVHRRIRESVARVDTVLQNALLNLYAKCGDLEESRRIFEAMERRT 64

Query: 317 LVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLH 376
           + +W  +I+ YVQ+   +EAL  F +M    +    SIT  S+L A      LE    +H
Sbjct: 65  VATWNTMITAYVQHDFFQEALEAFRRMDAPPS----SITFTSVLGACCSPDDLETGKAIH 120

Query: 377 GIAFEAGFPRYRS---VQNCLISSYSKCGNVDLAYIVFEEMGFLR-DVVSWNTIIYGYGV 432
                A  P+ ++   +QN L++ Y KCG+++ A  VF   G  R +  SW  +I  Y  
Sbjct: 121 R-QIGASSPQIQADEILQNSLVTMYGKCGSLEDAERVFH--GIRRKNAFSWTAMITAYAQ 177

Query: 433 NGHGETALALYHKMTETGEV-PDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQ 491
           NG+   A+ ++  M   G V PD  TY  +L AC   G    G+ I + +I    V+ + 
Sbjct: 178 NGYERRAIEVFGDMMSEGRVEPDPITYAGVLTACSTLGDLETGMRI-HALIRSKGVESAM 236

Query: 492 EHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN---IWRALLSGCVLH 536
              G ++DL  + G   DA     ++ E +      IW A ++ CV H
Sbjct: 237 VSTG-LIDLYGKWGFFEDAL----QVFESVRDRDVVIWTAFIAACVYH 279



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 127/287 (44%), Gaps = 25/287 (8%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L+S Y K G++  A  +FD IP K   SW +++   + NG   ++++ +S + 
Sbjct: 534 DEFVGNALVSMYSKFGRVDFARVVFDSIPVKRYPSWRVMLVALTQNGHSHEALEMYSRIH 593

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------- 106
           L G  P S      LV+   L+++  AR+IHG++       DL                 
Sbjct: 594 LEGFRPGSPIFSAALVSCTALEDVSRARAIHGVIKSSDFYPDLVLSNVLMNVYAKCGELE 653

Query: 107 -----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                F+ +     VS   ++ G+  N    +A+ L   ++   + PN +  + VI  C 
Sbjct: 654 EARLVFDQMTEKNEVSWTTMIGGYAQNGRPAEALEL---YKAMDVQPNFIAFVPVISSCA 710

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            LG+    + +H      GL  +  +  ++++MY+    L  A + F    C D  +W  
Sbjct: 711 DLGALVEGQRVHARLSDAGLQNNEVIVTALVNMYAKCGKLGLAREFFDSTYCPDAGAWNS 770

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLK 268
           M   +  F +    L+++REM    +  + + LL+++   + +G L+
Sbjct: 771 MATAYAQFGHGSQVLELYREMCLQGVQPNGITLLSVLVACSHMGMLE 817


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  241 bits (616), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 182/655 (27%), Positives = 306/655 (46%), Gaps = 98/655 (14%)

Query: 2   CIDPY-NSSKLLSNYFKSGKIKE---AENLF--DEIPEKNVVSWSIVIHGYSINGFHEKS 55
           C  P  N +KL+++  + G ++    A N F  D+    ++  ++ +I GY+  G  +++
Sbjct: 55  CHKPASNLNKLIASSVQIGTLESLDYARNAFGDDDGNMASLFMYNCLIRGYASAGLGDQA 114

Query: 56  MKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------- 105
           +  +  M++ G++P+ +T   +L A + +  L     +HG ++K GLE D          
Sbjct: 115 ILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQVHGAVLKMGLEGDIFVSNSLIHF 174

Query: 106 ------------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTM 153
                       LF+G+    +VS  +++ G+    L ++AV LF     +G+ PN VTM
Sbjct: 175 YAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTM 234

Query: 154 LTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC 213
           + VI  C  L    L + +     +LG+ L   + N+++DMY    D+ AA QIF E   
Sbjct: 235 VCVISACAKLKDLELGKKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECAN 294

Query: 214 KDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQL 273
           K+++ +  +M  +V  E+A D L I  EM +     D V +L+ I+  A LGDL  GK  
Sbjct: 295 KNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSS 354

Query: 274 HAQVVLGGLQSELRLSNSIIAMYSKC-------------------------------GDL 302
           HA V+  GL+    +SN+II MY KC                               GD+
Sbjct: 355 HAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDM 414

Query: 303 DSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTA 362
           + +  +F+++ E+ LVSW  +I   VQ     EA+  F +M+ +     D +T+V I +A
Sbjct: 415 ELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIPG-DRVTMVGIASA 473

Query: 363 SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVS 422
            G L AL++   +     +        +   L+  +S+CG+   A  VF+ M   RDV +
Sbjct: 474 CGYLGALDLAKWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRME-KRDVSA 532

Query: 423 WNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMI 482
           W   I    + G+ E A+ L+++M E    PD   ++++L AC H G  + G  +F  M 
Sbjct: 533 WTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVFVALLTACSHGGSVDQGRQLFWSME 592

Query: 483 EENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN--IWRALLSGCVLH---- 536
           + + ++P   HYGC+VDLL RAG L +A  L   +   + PN  +W +LL+ C  H    
Sbjct: 593 KAHGIRPHIVHYGCMVDLLGRAGLLEEAVDLIQSM--PIEPNDVVWGSLLAACRKHKNVE 650

Query: 537 -----------------------------VGRFQDAEALRSGSQKKGIIKIPGIS 562
                                         G++ D   +R   ++KG+ K+PG S
Sbjct: 651 LAHYAAEKLTQLAPERVGIHVLLSNIYASAGKWTDVARVRLQMKEKGVQKVPGSS 705


>gi|302795736|ref|XP_002979631.1| hypothetical protein SELMODRAFT_110838 [Selaginella moellendorffii]
 gi|300152879|gb|EFJ19520.1| hypothetical protein SELMODRAFT_110838 [Selaginella moellendorffii]
          Length = 879

 Score =  241 bits (616), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 155/534 (29%), Positives = 273/534 (51%), Gaps = 31/534 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y S+ LL  Y K   +++A  +FD I  K VV W+ +I  Y+    HE++++ F  M+
Sbjct: 134 DHYVSTTLLHMYGKCSSVEDARKVFDGIRHKRVVEWNAMITAYAQQDHHEQAIQVFYAML 193

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIH------------------GLMVKFGLESD 105
           L G+     T +GVL A + L++LE+A+ +                    L+  +G   D
Sbjct: 194 LEGVKAERITFIGVLDACSKLKDLEVAKLVKLCVEEREHDHLHDSSFATALVNFYGSCGD 253

Query: 106 LFEGLK-----NPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
           L +  +        L+   A++  +   + + +A+ LF      G+  + +  + V+  C
Sbjct: 254 LEQAFRAFSRHRLELILATAMITQYTQRERWDEALELFKVMLLEGVKLDRIACMAVLNAC 313

Query: 161 VALGSRALCE--LIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
              G R L E  +IHG   ++     V+  N++++MY     L+ A+++FR M+ +DVIS
Sbjct: 314 S--GPRGLEEGRMIHGFMREIRFDRHVNAGNALINMYGKCGSLEEAVEVFRSMQHRDVIS 371

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           W  ++          +AL +   M+   +  D ++ +N + + A    L +G+ +H+ +V
Sbjct: 372 WNTIIAAHGQHSQHPEALHLLHLMQLDGVKADKISFVNALPLCAASEALAKGRMIHSWIV 431

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGY-VQNGCAREAL 337
             G+++++ L N+I+ MY  C   D +  VF  +  +  VSW A+I+ Y  Q   + EAL
Sbjct: 432 ESGIKADVMLDNAILDMYGSCKSTDDASRVFRAMKARDQVSWNAMITAYAAQPRLSSEAL 491

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
             F +M Q      D I+ V+ L+A    A+L     LH    E G     +V N +++ 
Sbjct: 492 LLFQQM-QLHGFMPDVISFVAALSACAAQASLAEGKLLHDRIRETGLESNMTVANAVLNM 550

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           Y+K G++ LA  +F +M  L DV+SWN +I  +  +GH +  L  + +M   G++P+  T
Sbjct: 551 YAKSGSLVLARKMFGKMP-LPDVISWNGMISAFAQHGHADQVLRFFRRMNHEGKLPNDVT 609

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEE-NKVKPSQEHYGCVVDLLARAGCLSDA 510
           ++S+++AC H GL  DG+ +F  ++ +   + P  EHY C+VDL+ARAG L  A
Sbjct: 610 FVSVVSACSHGGLVKDGVQLFVSLLHDFPTISPRAEHYYCMVDLIARAGKLDAA 663



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 136/567 (23%), Positives = 258/567 (45%), Gaps = 49/567 (8%)

Query: 5   PYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML 64
           P+    L+  Y   G + +A+  FD +P ++ ++W+ +I  +   G  E+++  F  M L
Sbjct: 33  PFMGDLLVRMYVDCGSLIDAKACFDRMPVQDALTWARLIRAHGQIGDSEQALHLFRSMQL 92

Query: 65  SGLLPNSFTMVGVLVA-AAGLQNLELARSIHGLMVKFGLESD------------------ 105
            G+ P +   V VL A +A  + LE  R IHG++    +ESD                  
Sbjct: 93  EGVAPVNRNFVAVLGACSADPELLEEGRRIHGVLRGTAMESDHYVSTTLLHMYGKCSSVE 152

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +F+G+++  +V  NA++  +      +QA+ +F      G+    +T + V+  C 
Sbjct: 153 DARKVFDGIRHKRVVEWNAMITAYAQQDHHEQAIQVFYAMLLEGVKAERITFIGVLDACS 212

Query: 162 ALGSRALCELIHGLTI---KLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            L    + +L+  L +   +   + D S   ++++ Y    DL+ A + F     + +++
Sbjct: 213 KLKDLEVAKLV-KLCVEEREHDHLHDSSFATALVNFYGSCGDLEQAFRAFSRHRLELILA 271

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
            T M+  +   E   +AL++F+ M    +  D +A + +++  +    L+ G+ +H    
Sbjct: 272 -TAMITQYTQRERWDEALELFKVMLLEGVKLDRIACMAVLNACSGPRGLEEGRMIH---- 326

Query: 279 LGGLQSELRLS------NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC 332
             G   E+R        N++I MY KCG L+ +  VF  +  + ++SW  II+ + Q+  
Sbjct: 327 --GFMREIRFDRHVNAGNALINMYGKCGSLEEAVEVFRSMQHRDVISWNTIIAAHGQHSQ 384

Query: 333 AREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN 392
             EAL+  + + Q      D I+ V+ L       AL     +H    E+G      + N
Sbjct: 385 HPEALH-LLHLMQLDGVKADKISFVNALPLCAASEALAKGRMIHSWIVESGIKADVMLDN 443

Query: 393 CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGH-GETALALYHKMTETGE 451
            ++  Y  C + D A  VF  M   RD VSWN +I  Y         AL L+ +M   G 
Sbjct: 444 AILDMYGSCKSTDDASRVFRAMK-ARDQVSWNAMITAYAAQPRLSSEALLLFQQMQLHGF 502

Query: 452 VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDAS 511
           +PD  ++++ L+AC       +G ++ ++ I E  ++ +      V+++ A++G L  A 
Sbjct: 503 MPDVISFVAALSACAAQASLAEGKLLHDR-IRETGLESNMTVANAVLNMYAKSGSLVLAR 561

Query: 512 GLAGKLLEGMGPNI--WRALLSGCVLH 536
            + GK+     P++  W  ++S    H
Sbjct: 562 KMFGKMPL---PDVISWNGMISAFAQH 585



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 105/211 (49%), Gaps = 3/211 (1%)

Query: 256 NLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK 315
           +L+ V A    L  GK++HA++    +     + + ++ MY  CG L  +++ F+++  +
Sbjct: 3   DLLDVVADSRSLDLGKEVHARICKSAMDRGPFMGDLLVRMYVDCGSLIDAKACFDRMPVQ 62

Query: 316 SLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTA-SGELAALEICLQ 374
             ++W  +I  + Q G + +AL+ F  M+ E    V+    V++L A S +   LE   +
Sbjct: 63  DALTWARLIRAHGQIGDSEQALHLFRSMQLEGVAPVNR-NFVAVLGACSADPELLEEGRR 121

Query: 375 LHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNG 434
           +HG+           V   L+  Y KC +V+ A  VF+ +   R VV WN +I  Y    
Sbjct: 122 IHGVLRGTAMESDHYVSTTLLHMYGKCSSVEDARKVFDGIRHKR-VVEWNAMITAYAQQD 180

Query: 435 HGETALALYHKMTETGEVPDSSTYLSILNAC 465
           H E A+ +++ M   G   +  T++ +L+AC
Sbjct: 181 HHEQAIQVFYAMLLEGVKAERITFIGVLDAC 211


>gi|296085026|emb|CBI28441.3| unnamed protein product [Vitis vinifera]
          Length = 913

 Score =  241 bits (616), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 177/598 (29%), Positives = 287/598 (47%), Gaps = 75/598 (12%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ L++ Y + G +  A+ LFDE+  +N+V+W+ +I GY+ NG  +++   F  M+ +G 
Sbjct: 137 SNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGF 196

Query: 68  LPNSFTMVGVLVAA--AGLQNLELARSIHGLMVKFGLESDL------------------- 106
           +PN +     L A   +G    +L   IHGL+ K    SD+                   
Sbjct: 197 IPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSAND 256

Query: 107 ----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGL----VPN-AVTMLTVI 157
               F+G+     +S N+I++ +        A  LF+  +  GL     PN A +  +V+
Sbjct: 257 ARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNDAFSEFSVL 316

Query: 158 RGCVALGSRALCELIHGLTIKLGLILD-VSVNNSVLDMY--------------------- 195
                 G R   E +H   I+ GL  + V++ N +++MY                     
Sbjct: 317 EE----GRRKGRE-VHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDS 371

Query: 196 ----SCLMDLDA------AIQIFREMECKDVISWTRMMGLFVDFEYA-GDALKIFREMRK 244
               S +  LD       A ++F  M   D +SW  ++G   D E +   A+K F +M +
Sbjct: 372 VSWNSLISGLDQNECSEDAAEMFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMR 431

Query: 245 SRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDS 304
                  V  +N++S  + L   +   Q+HA V+   L  +  + N++++ Y KCG+++ 
Sbjct: 432 GGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNE 491

Query: 305 SRSVFNQITE-KSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTAS 363
              +F +++E +  VSW ++ISGY+ N    +A++    M Q K   +DS T  +IL+A 
Sbjct: 492 CEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQ-KGQRLDSFTFATILSAC 550

Query: 364 GELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSW 423
             +A LE  +++H     A       V + L+  YSKCG +D A   FE M  LR+V SW
Sbjct: 551 ASVATLERGMEVHACGIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMP-LRNVYSW 609

Query: 424 NTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIE 483
           N++I GY  +GHGE AL L+ +M   G+ PD  T++ +L+AC H G   +G   F  M E
Sbjct: 610 NSMISGYARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLSACSHVGFVEEGFEHFKSMSE 669

Query: 484 ENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN--IWRALLSGCVLHVGR 539
             ++ P  EH+ C+VDLL RAG L +       +   M PN  IWR +L  C    GR
Sbjct: 670 VYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSM--PMKPNVLIWRTVLGACCRANGR 725



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 128/494 (25%), Positives = 221/494 (44%), Gaps = 50/494 (10%)

Query: 86  NLELARSIHGLMVK---FGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFR 142
           NL L+ ++  + V+    G    LF+ + N  LV+   +++G+  N    +A   F    
Sbjct: 133 NLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMV 192

Query: 143 GSGLVPNAVTMLTVIRGCVALGSRALCEL---IHGLTIKLGLILDVSVNNSVLDMY-SCL 198
            +G +PN     + +R C   G    C+L   IHGL  K     DV V N ++ MY SCL
Sbjct: 193 RAGFIPNHYAFGSALRACQESGPSG-CKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCL 251

Query: 199 MDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLI 258
              + A  +F  +  ++ ISW  ++ ++     A  A  +F  M+K  +           
Sbjct: 252 DSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNDAFS 311

Query: 259 SVNAILGDLKRGKQLHAQVVLGGL-QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSL 317
             + +    ++G+++HA V+  GL  +++ + N ++ MY+K G +  + SVF  + EK  
Sbjct: 312 EFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDS 371

Query: 318 VSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDS------------------------ 353
           VSW ++ISG  QN C+ +A   F  M +    S +S                        
Sbjct: 372 VSWNSLISGLDQNECSEDAAEMFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMR 431

Query: 354 -------ITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
                  +T ++IL+A   L+  E+  Q+H +  +       ++ N L+S Y KCG ++ 
Sbjct: 432 GGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNE 491

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
              +F  M   RD VSWN++I GY  N     A+ L   M + G+  DS T+ +IL+AC 
Sbjct: 492 CEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACA 551

Query: 467 HAGLTNDGLVI----FNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMG 522
                  G+ +        +E + V  S      +VD+ ++ G +  AS    +L+    
Sbjct: 552 SVATLERGMEVHACGIRACLESDVVVGS-----ALVDMYSKCGRIDYASRFF-ELMPLRN 605

Query: 523 PNIWRALLSGCVLH 536
              W +++SG   H
Sbjct: 606 VYSWNSMISGYARH 619



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 144/289 (49%), Gaps = 14/289 (4%)

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           +H  +IK G + ++ ++N+++++Y  + DL +A ++F EM  +++++W  ++  +     
Sbjct: 121 LHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGK 180

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGD--LKRGKQLHAQVVLGGLQSELRLS 289
             +A   FR+M ++  I +  A  + +      G    K G Q+H  +      S++ + 
Sbjct: 181 PDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVC 240

Query: 290 NSIIAMYSKCGD-LDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE-- 346
           N +I+MY  C D  + +RSVF+ I  ++ +SW +IIS Y + G A  A + F  M++E  
Sbjct: 241 NVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGL 300

Query: 347 --KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYR-SVQNCLISSYSKCGN 403
                  D+ +  S+L   G     E+    H      G    + ++ N L++ Y+K G 
Sbjct: 301 GFSFKPNDAFSEFSVLE-EGRRKGREV----HAHVIRTGLNDNKVAIGNGLVNMYAKSGA 355

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV 452
           +  A  VFE M   +D VSWN++I G   N   E A  ++  M E  +V
Sbjct: 356 IADACSVFELM-VEKDSVSWNSLISGLDQNECSEDAAEMFSLMPEYDQV 403



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 138/273 (50%), Gaps = 16/273 (5%)

Query: 268 KRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGY 327
           +  ++LH Q +  G    L LSN++I +Y + GDL S++ +F++++ ++LV+W  +ISGY
Sbjct: 116 EEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGY 175

Query: 328 VQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGE--LAALEICLQLHGIAFEAGFP 385
            QNG   EA  +F  M +      +     S L A  E   +  ++ +Q+HG+  +  + 
Sbjct: 176 TQNGKPDEACARFRDMVRAGFIP-NHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYG 234

Query: 386 RYRSVQNCLISSYSKC-GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH 444
               V N LIS Y  C  + + A  VF+ +G +R+ +SWN+II  Y   G   +A  L+ 
Sbjct: 235 SDVVVCNVLISMYGSCLDSANDARSVFDGIG-IRNSISWNSIISVYSRRGDAVSAYDLFS 293

Query: 445 KMTETG-----EVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVD 499
            M + G     +  D+ +  S+L      G      VI    + +NKV         +V+
Sbjct: 294 SMQKEGLGFSFKPNDAFSEFSVLEEGRRKGREVHAHVI-RTGLNDNKVAIGNG----LVN 348

Query: 500 LLARAGCLSDASGLAGKLLEGMGPNIWRALLSG 532
           + A++G ++DA  +   ++E    + W +L+SG
Sbjct: 349 MYAKSGAIADACSVFELMVEKDSVS-WNSLISG 380



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 92/399 (23%), Positives = 178/399 (44%), Gaps = 42/399 (10%)

Query: 22  KEAENLFDEIPEKNVVSWSIVIHGYSINGFH-EKSMKAFSHMMLSGLLPNSFTMVGVLVA 80
           ++A  +F  +PE + VSW+ VI   S +     +++K F  MM  G   +  T + +L A
Sbjct: 388 EDAAEMFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSA 447

Query: 81  AAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYL------------------------- 115
            + L   E++  IH L++K+ L  D    + N  L                         
Sbjct: 448 VSSLSLHEVSHQIHALVLKYCLSDDT--AIGNALLSCYGKCGEMNECEKIFARMSETRDE 505

Query: 116 VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGL 175
           VS N++++G+I+N+L  +A+ L  F    G   ++ T  T++  C ++ +      +H  
Sbjct: 506 VSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATLERGMEVHAC 565

Query: 176 TIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDA 235
            I+  L  DV V ++++DMYS    +D A + F  M  ++V SW  M+  +    +   A
Sbjct: 566 GIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKA 625

Query: 236 LKIFREMRKSRIICDTVALLNLISVNAILGDLKRG-KQLHAQVVLGGLQSELRLSNSIIA 294
           LK+F  M       D V  + ++S  + +G ++ G +   +   +  L   +   + ++ 
Sbjct: 626 LKLFTRMMLDGQPPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVD 685

Query: 295 MYSKCGDLDSSRSVFNQITEK-SLVSWTAIISGYVQ-NG----CAREALNQFIKMRQEKT 348
           +  + G LD      N +  K +++ W  ++    + NG      R A    +++  E  
Sbjct: 686 LLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELGRRAAEMLLEL--EPQ 743

Query: 349 DSVDSITLVSILTASGE----LAALEICLQLHGIAFEAG 383
           ++V+ + L + + ASGE    +A     ++   +  EAG
Sbjct: 744 NAVNYVLLAN-MYASGEKWEDVAKARTAMKEAAVKKEAG 781



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 93/198 (46%), Gaps = 13/198 (6%)

Query: 370 EICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYG 429
           E   +LH  + + GF     + N LI+ Y + G++  A  +F+EM   R++V+W  +I G
Sbjct: 116 EEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSN-RNLVTWACLISG 174

Query: 430 YGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGL-VIFNQMIEENKVK 488
           Y  NG  + A A +  M   G +P+   + S L AC  +G +   L V  + +I  +K +
Sbjct: 175 YTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLI--SKTR 232

Query: 489 PSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN---IWRALLSGCVLHVGRFQDAEA 545
              +   C V +     CL D++  A  + +G+G      W +++S      G    A  
Sbjct: 233 YGSDVVVCNVLISMYGSCL-DSANDARSVFDGIGIRNSISWNSIIS-VYSRRGDAVSAYD 290

Query: 546 LRSGSQKKGIIKIPGISF 563
           L S  QK+G+    G SF
Sbjct: 291 LFSSMQKEGL----GFSF 304


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  241 bits (616), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 148/424 (34%), Positives = 226/424 (53%), Gaps = 6/424 (1%)

Query: 116 VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGL 175
            S NA +      + FQ+A+ L+     SG  PNA T     + C +L        +HG 
Sbjct: 22  ASWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLHGH 81

Query: 176 TIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKD--VISWTRMMGLFVDFEYAG 233
            IK G   +  V  S++ MY     + +A ++F E        + +  ++  +       
Sbjct: 82  VIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFS 141

Query: 234 DALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSII 293
           DA+ +FR+MRK  +  + V +L LI V A    L  G  LHA  V  GL  +L + N ++
Sbjct: 142 DAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLSVGNCLL 201

Query: 294 AMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV-D 352
            MY +CG +D +R +F+ + EK L++W A+ISGY QNG A   L+ + KM  E T  V D
Sbjct: 202 TMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKM--EFTGIVPD 259

Query: 353 SITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFE 412
            +TLV +L++   L A     ++      +GF     ++N LI+ Y++CGN+  A  +F+
Sbjct: 260 PVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKARAIFD 319

Query: 413 EMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTN 472
            M   ++V+SW  II GYG++G GE A+ L+ +M  + E+PD + ++S+L+AC HAGLT 
Sbjct: 320 GMT-EKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAGLTE 378

Query: 473 DGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSG 532
            GL  F  M  +  ++P  EHY CVVDLL RAG L +A  L G +       +W ALL  
Sbjct: 379 KGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAVWGALLGA 438

Query: 533 CVLH 536
           C +H
Sbjct: 439 CKIH 442



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 133/487 (27%), Positives = 227/487 (46%), Gaps = 40/487 (8%)

Query: 33  EKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARS 92
           +    SW+  +   +     ++++  +  M+ SG  PN+FT      + A L +L LA S
Sbjct: 18  QNTTASWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASL-SLPLAGS 76

Query: 93  -IHGLMVKFGLESDLF-----------------------EGLKNPYLVSC-NAIVAGFIN 127
            +HG ++K G E + F                       E   +  L  C NA++AG+  
Sbjct: 77  QLHGHVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSL 136

Query: 128 NKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSV 187
           N  F  AVLLF   R  G+  NAVTML +I  C           +H  +++ GL  D+SV
Sbjct: 137 NSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLSV 196

Query: 188 NNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRI 247
            N +L MY     +D A ++F  M  K +I+W  M+  +     AG  L ++R+M  + I
Sbjct: 197 GNCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGI 256

Query: 248 ICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRS 307
           + D V L+ ++S  A LG    G+++  ++ L G      L N++I MY++CG+L  +R+
Sbjct: 257 VPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKARA 316

Query: 308 VFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELA 367
           +F+ +TEK+++SWTAII+GY  +G    A+  F +M     +  D    VS+L+A     
Sbjct: 317 IFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEM-ISSDELPDGAAFVSVLSACSHAG 375

Query: 368 ALEICLQLHGIAFEAGFPRYRSVQ------NCLISSYSKCGNVDLAYIVFEEMGFLRDVV 421
             E      G+ +     R   +Q      +C++    + G ++ A  +   M    D  
Sbjct: 376 LTE-----KGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGA 430

Query: 422 SWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQM 481
            W  ++    ++ + E A   + K+ E  E  +   Y+ + N    AG   +G++    M
Sbjct: 431 VWGALLGACKIHRNVELAELAFEKVIEF-EPTNIGYYVLLSNIFSEAG-NMEGILRVRVM 488

Query: 482 IEENKVK 488
           + E K+K
Sbjct: 489 MRERKLK 495



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 161/347 (46%), Gaps = 26/347 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKN--VVSWSIVIHGYSINGFHEKSMKAFSH 61
           +P+  + L+S Y K   I  A  +FDE        V ++ +I GYS+N     ++  F  
Sbjct: 90  EPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFSDAVLLFRQ 149

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------- 105
           M   G+  N+ TM+G++   AG  +L    S+H   V+FGL+ D                
Sbjct: 150 MRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLSVGNCLLTMYVRCGS 209

Query: 106 ------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                 LF+G+    L++ NA+++G+  N L    + L+     +G+VP+ VT++ V+  
Sbjct: 210 VDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSS 269

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C  LG+ A    +       G   +  + N++++MY+   +L  A  IF  M  K+VISW
Sbjct: 270 CAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKARAIFDGMTEKNVISW 329

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG-KQLHAQVV 278
           T ++  +        A+++F EM  S  + D  A ++++S  +  G  ++G     A   
Sbjct: 330 TAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAGLTEKGLYYFTAMER 389

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAII 324
             GLQ      + ++ +  + G L+ +R +   ++ E     W A++
Sbjct: 390 DYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAVWGALL 436


>gi|147765658|emb|CAN78103.1| hypothetical protein VITISV_043511 [Vitis vinifera]
          Length = 1849

 Score =  241 bits (616), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 172/590 (29%), Positives = 286/590 (48%), Gaps = 67/590 (11%)

Query: 11   LLSNYFKSGKI-KEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLP 69
            L+S Y K G +  +A   F+ I  K+VVSW+ VI G+S N F E++ K F  M+   + P
Sbjct: 1114 LISMYAKCGLVCSDAYAAFNRIEFKDVVSWNAVIAGFSENKFTEEAFKLFHAMLKGPIQP 1173

Query: 70   NSFTMVGVLVAAAGLQN---LELARSIH-GLMVKFGLESD-------------------- 105
            N  T+  +L   A L+        + +H  ++ +  L  D                    
Sbjct: 1174 NYATIASILPVCASLEENAGYRYGKEVHCHVLRRMELVEDVSVINSLMSFYLRIXQMEKA 1233

Query: 106  --LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFN-FFRGSGLVPNAVTMLTVIRGCVA 162
              LF  +K+  LVS NAI+AG+ +N  + +A+ LF+ F     + P++VT+++V+  C  
Sbjct: 1234 EFLFRNMKSRDLVSWNAIIAGYASNGEWLKALELFSEFISLETIKPDSVTLVSVLPACAH 1293

Query: 163  LGSRALCELIHGLTIK-LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            + +  + + IHG  I+  GL  D SV N++L  Y+      AA+Q F  +  KD+ISW  
Sbjct: 1294 VHNLQVAKGIHGYIIRHPGLREDTSVGNALLSFYAKCNYTQAALQTFLMISRKDLISWNA 1353

Query: 222  MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
            ++  F +       + +   M +  I  D++ +L +I   A +  +K+ K+ H+  +  G
Sbjct: 1354 ILDAFTESGCETHLVNLLHWMLREGIRPDSITILTIIQYYAAVSRVKKVKETHSYSIRFG 1413

Query: 282  L---QSELRLSNSIIAMYSKCGDL--------------------------------DSSR 306
            L    +   L N ++  Y+KCG++                                D + 
Sbjct: 1414 LLQGDAXPTLGNGMLDAYAKCGNMKYAVNIFGSLSEKRNVVTCNSMISGYVTSSSHDDAY 1473

Query: 307  SVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGEL 366
            ++FN ++E  L +W  ++  Y +N    +AL+ F ++ Q +    D +T++SIL A   +
Sbjct: 1474 AIFNTMSETDLTTWNLMVRVYAENDFPDQALSLFHEL-QGQGMKPDIVTIMSILPACAHM 1532

Query: 367  AALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTI 426
            A++ +  Q HG    A F   R +    I  YSKCG+V  AY +F      +D+V +  +
Sbjct: 1533 ASVHMLRQCHGYVIRACFNDVR-LNGAFIDMYSKCGSVFGAYKLFLSSP-QKDLVMFTAM 1590

Query: 427  IYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENK 486
            + G+ ++G GE AL ++  M E G  PD     ++L AC HAGL ++G  IFN + + + 
Sbjct: 1591 VGGFAMHGMGEEALRIFSYMLELGVKPDHVIITAVLFACSHAGLVDEGWKIFNSIEKVHG 1650

Query: 487  VKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
             +P+ E Y CVVDLLAR G + DA     ++      NIW  LL  C  H
Sbjct: 1651 FQPTMEQYACVVDLLARGGRIKDAYTFVTRMPIEANANIWGTLLGACRTH 1700



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 139/523 (26%), Positives = 251/523 (47%), Gaps = 69/523 (13%)

Query: 11   LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKS-MKAFSHM-MLSGLL 68
            LL+ Y KSG +     LF E+ +++ V W+IV+ G +    HE   M+ F  M M++   
Sbjct: 1012 LLNLYAKSGALDYCNKLFGEMDQRDPVIWNIVLSGLAGFQSHEAEVMRLFRAMHMVNEAK 1071

Query: 69   PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG------------------- 109
            PNS T+  VL   A L+  +  +S+H  ++K GLES    G                   
Sbjct: 1072 PNSVTIAIVLPVCARLRE-DAGKSVHSYVIKSGLESHTLAGNALISMYAKCGLVCSDAYA 1130

Query: 110  ----LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL-- 163
                ++   +VS NA++AGF  NK  ++A  LF+      + PN  T+ +++  C +L  
Sbjct: 1131 AFNRIEFKDVVSWNAVIAGFSENKFTEEAFKLFHAMLKGPIQPNYATIASILPVCASLEE 1190

Query: 164  --GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
              G R   E+   +  ++ L+ DVSV NS++  Y  +  ++ A  +FR M+ +D++SW  
Sbjct: 1191 NAGYRYGKEVHCHVLRRMELVEDVSVINSLMSFYLRIXQMEKAEFLFRNMKSRDLVSWNA 1250

Query: 222  MMGLFVDFEYAGDALKIFRE-MRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL- 279
            ++  +        AL++F E +    I  D+V L++++   A + +L+  K +H  ++  
Sbjct: 1251 IIAGYASNGEWLKALELFSEFISLETIKPDSVTLVSVLPACAHVHNLQVAKGIHGYIIRH 1310

Query: 280  GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
             GL+ +  + N++++ Y+KC    ++   F  I+ K L+SW AI+  + ++GC    +N 
Sbjct: 1311 PGLREDTSVGNALLSFYAKCNYTQAALQTFLMISRKDLISWNAILDAFTESGCETHLVNL 1370

Query: 340  FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPR---YRSVQNCLIS 396
               M +E     DSIT+++I+     ++ ++   + H  +   G  +     ++ N ++ 
Sbjct: 1371 LHWMLREGIRP-DSITILTIIQYYAAVSRVKKVKETHSYSIRFGLLQGDAXPTLGNGMLD 1429

Query: 397  SYSKCGNV--------------------------------DLAYIVFEEMGFLRDVVSWN 424
            +Y+KCGN+                                D AY +F  M    D+ +WN
Sbjct: 1430 AYAKCGNMKYAVNIFGSLSEKRNVVTCNSMISGYVTSSSHDDAYAIFNTMSET-DLTTWN 1488

Query: 425  TIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
             ++  Y  N   + AL+L+H++   G  PD  T +SIL AC H
Sbjct: 1489 LMVRVYAENDFPDQALSLFHELQGQGMKPDIVTIMSILPACAH 1531



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 121/441 (27%), Positives = 198/441 (44%), Gaps = 58/441 (13%)

Query: 66   GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGF 125
            G  PN   +  +L +      +     +HG  +K G              VSC ++  G 
Sbjct: 966  GYKPNGQILAALLKSCVAXSAIRFGSVLHGYALKLGH-------------VSCQSLCKGL 1012

Query: 126  IN-----------NKLF----QQAVLLFN------------------FFRGSGLV----P 148
            +N           NKLF    Q+  +++N                   FR   +V    P
Sbjct: 1013 LNLYAKSGALDYCNKLFGEMDQRDPVIWNIVLSGLAGFQSHEAEVMRLFRAMHMVNEAKP 1072

Query: 149  NAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYS-CLMDLDAAIQI 207
            N+VT+  V+  C  L   A  + +H   IK GL       N+++ MY+ C +    A   
Sbjct: 1073 NSVTIAIVLPVCARLREDA-GKSVHSYVIKSGLESHTLAGNALISMYAKCGLVCSDAYAA 1131

Query: 208  FREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGD- 266
            F  +E KDV+SW  ++  F + ++  +A K+F  M K  I  +   + +++ V A L + 
Sbjct: 1132 FNRIEFKDVVSWNAVIAGFSENKFTEEAFKLFHAMLKGPIQPNYATIASILPVCASLEEN 1191

Query: 267  --LKRGKQLHAQVVLG-GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAI 323
               + GK++H  V+    L  ++ + NS+++ Y +   ++ +  +F  +  + LVSW AI
Sbjct: 1192 AGYRYGKEVHCHVLRRMELVEDVSVINSLMSFYLRIXQMEKAEFLFRNMKSRDLVSWNAI 1251

Query: 324  ISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHG-IAFEA 382
            I+GY  NG   +AL  F +    +T   DS+TLVS+L A   +  L++   +HG I    
Sbjct: 1252 IAGYASNGEWLKALELFSEFISLETIKPDSVTLVSVLPACAHVHNLQVAKGIHGYIIRHP 1311

Query: 383  GFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALAL 442
            G     SV N L+S Y+KC     A   F  M   +D++SWN I+  +  +G     + L
Sbjct: 1312 GLREDTSVGNALLSFYAKCNYTQAALQTF-LMISRKDLISWNAILDAFTESGCETHLVNL 1370

Query: 443  YHKMTETGEVPDSSTYLSILN 463
             H M   G  PDS T L+I+ 
Sbjct: 1371 LHWMLREGIRPDSITILTIIQ 1391


>gi|297848206|ref|XP_002891984.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297337826|gb|EFH68243.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 611

 Score =  241 bits (616), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 138/435 (31%), Positives = 238/435 (54%), Gaps = 9/435 (2%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           LF+ +    +V+  A++ G+ ++     A   F+     G  PN  T+ +V++ C  +  
Sbjct: 67  LFDEMPERDVVAWTAMITGYASSNYNSCAWECFHEMFKQGRSPNEFTLSSVLKSCRNMKV 126

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMY-SCLMDLDAAIQIFREMECKDVISWTRMMG 224
            A   L+HG+ +KLG+   + V+N++++MY +C + ++AA  IFR+++ K+ ++WT    
Sbjct: 127 LAYGALVHGVVVKLGMEGSLYVDNALMNMYATCSVTMEAAFLIFRDIKVKNDVTWTT--- 183

Query: 225 LFVDFEYAGDA---LKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           L   F + GD    LK++++M           +   +  +A +  +  GKQ+HA VV  G
Sbjct: 184 LITGFTHLGDGIGGLKMYKQMLLENADVTPYCITIAVRASASIDSVTTGKQIHASVVKRG 243

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
            QS L + NSI+  Y +CG L  ++  F+++ +K L++W  +IS  ++   + EAL  F 
Sbjct: 244 FQSNLPVMNSILDFYCRCGYLSEAKRYFHEMEDKDLITWNTLISE-LERSDSSEALLMFQ 302

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +  + +    +  T  S++ A   +AAL    QLHG  +  GF +   + N LI  Y+KC
Sbjct: 303 RF-ESQGFVPNCYTFTSLVAACANIAALNCGQQLHGRIYRRGFNKNVELANALIDMYAKC 361

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G++  +  VF E+   R++VSW +++ GYG +G+G  A+ L+ KM  +G  PD   ++++
Sbjct: 362 GDIPDSERVFGEIEERRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMAV 421

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L+AC HAGL   GL  FN M  E  + P ++ Y CVVDLL RAG + +A  L  ++    
Sbjct: 422 LSACRHAGLVEKGLKYFNVMESEYGINPDRDIYNCVVDLLGRAGKIGEAYELVERMPFKP 481

Query: 522 GPNIWRALLSGCVLH 536
             + W A+L  C  H
Sbjct: 482 DESTWGAILGACKAH 496



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 130/470 (27%), Positives = 227/470 (48%), Gaps = 48/470 (10%)

Query: 5   PYNSSK-------LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMK 57
           PY   K       L+ +YF+ G ++EA +LFDE+PE++VV+W+ +I GY+ + ++  + +
Sbjct: 38  PYKPKKHHILATNLIVSYFEKGLVEEARSLFDEMPERDVVAWTAMITGYASSNYNSCAWE 97

Query: 58  AFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPYL 115
            F  M   G  PN FT+  VL +   ++ L     +HG++VK G+E  L+    L N Y 
Sbjct: 98  CFHEMFKQGRSPNEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNALMNMYA 157

Query: 116 ---------------------VSCNAIVAGFIN-------NKLFQQAVLLFNFFRGSGLV 147
                                V+   ++ GF +        K+++Q +L       + + 
Sbjct: 158 TCSVTMEAAFLIFRDIKVKNDVTWTTLITGFTHLGDGIGGLKMYKQMLL-----ENADVT 212

Query: 148 PNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQI 207
           P  +T+   +R   ++ S    + IH   +K G   ++ V NS+LD Y     L  A + 
Sbjct: 213 PYCITI--AVRASASIDSVTTGKQIHASVVKRGFQSNLPVMNSILDFYCRCGYLSEAKRY 270

Query: 208 FREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDL 267
           F EME KD+I+W  ++   ++   + +AL +F+       + +     +L++  A +  L
Sbjct: 271 FHEMEDKDLITWNTLISE-LERSDSSEALLMFQRFESQGFVPNCYTFTSLVAACANIAAL 329

Query: 268 KRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE-KSLVSWTAIISG 326
             G+QLH ++   G    + L+N++I MY+KCGD+  S  VF +I E ++LVSWT+++ G
Sbjct: 330 NCGQQLHGRIYRRGFNKNVELANALIDMYAKCGDIPDSERVFGEIEERRNLVSWTSMMIG 389

Query: 327 YVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGI-AFEAGFP 385
           Y  +G   EA+  F KM        D I  +++L+A      +E  L+   +   E G  
Sbjct: 390 YGSHGYGAEAVELFDKMVSSGIRP-DRIVFMAVLSACRHAGLVEKGLKYFNVMESEYGIN 448

Query: 386 RYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGH 435
             R + NC++    + G +  AY + E M F  D  +W  I+     + H
Sbjct: 449 PDRDIYNCVVDLLGRAGKIGEAYELVERMPFKPDESTWGAILGACKAHKH 498



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 88/163 (53%), Gaps = 9/163 (5%)

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQ---NGCAREALNQFIKMR 344
           L+ ++I  Y + G ++ +RS+F+++ E+ +V+WTA+I+GY     N CA E  ++  K  
Sbjct: 47  LATNLIVSYFEKGLVEEARSLFDEMPERDVVAWTAMITGYASSNYNSCAWECFHEMFK-- 104

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG-N 403
             +  S +  TL S+L +   +  L     +HG+  + G      V N L++ Y+ C   
Sbjct: 105 --QGRSPNEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNALMNMYATCSVT 162

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM 446
           ++ A+++F ++    D V+W T+I G+   G G   L +Y +M
Sbjct: 163 MEAAFLIFRDIKVKND-VTWTTLITGFTHLGDGIGGLKMYKQM 204


>gi|302765581|ref|XP_002966211.1| hypothetical protein SELMODRAFT_85415 [Selaginella moellendorffii]
 gi|300165631|gb|EFJ32238.1| hypothetical protein SELMODRAFT_85415 [Selaginella moellendorffii]
          Length = 969

 Score =  241 bits (616), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 154/573 (26%), Positives = 277/573 (48%), Gaps = 36/573 (6%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFH-EKSMKAFSHMMLSG 66
           ++ LL  Y +    +++ +LFD +  ++ VSWS +I   S    H   ++  +  M+  G
Sbjct: 354 ANSLLGMYSRCRSWEDSRSLFDRMSVRDSVSWSTIIMACSREDSHCRDALPLYRSMLHEG 413

Query: 67  LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL-------------------- 106
           ++P +  +  VL A   L  L+  + +H  +++ GLE DL                    
Sbjct: 414 VMPKTLALSMVLEACGSLAELKGGKLVHAHVIESGLEGDLVGISLVNMYAKCGTVGEARK 473

Query: 107 -FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
            F+ + N   +  N+++  +   K   +A+ LF   +  G+ P+ +T +TV+  CV    
Sbjct: 474 VFDRINNRSRILWNSMITAY-QEKDPHEALHLFREMQPEGVSPDRITFMTVLNACVNAAD 532

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
                 IH   +  G   DV V  ++ +MY+    L  A  +F  M  +DV+SW  M+  
Sbjct: 533 LENGRTIHTRIVDSGFAADVRVATALFNMYAKCGSLGEARGVFDSMVFRDVVSWNNMIAA 592

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +V       A+ +   M+   +  D     +L++  +    L  G+Q+H+ +    L+++
Sbjct: 593 YVQGRDGEGAISLCWAMQLEGMRPDKATFTSLLNACSDPNRLVDGRQIHSWIAESRLEND 652

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQI------TEKSLVSWTAIISGYVQNGCAREALNQ 339
           + +   +I MY+ CG L+++R +F+ I        + L  WT++I+ Y Q+G  R+AL  
Sbjct: 653 IVMVTGLITMYANCGSLNNAREIFDNIFSNSRQHHRDLFLWTSMITAYEQHGEYRKALEL 712

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           + +M   + ++ D +T +S+L A   L+ L     +H      G     +V N ++  Y 
Sbjct: 713 YEQMHSRQVEA-DRVTFISVLNACAHLSDLRQGQAIHARVMRRGLATDVAVANSIVFMYG 771

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           KCG+ D A IVFE+    +D+  W  +I  Y  +GHGE AL ++ ++ + G    + T++
Sbjct: 772 KCGSFDEASIVFEKTKH-KDISLWTALIASYARHGHGEQALWIFRRLRQDGIELSNLTFV 830

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519
           ++L+AC H GL  +G   F  M E   ++P+ EH+ C+VDLLARAG L  A     ++  
Sbjct: 831 AMLSACSHVGLIEEGCEFFASMAELG-IEPNMEHHSCLVDLLARAGHLHTAEEFLSRMPV 889

Query: 520 GMGPNIWRALLSGCVLHVGRFQDAEALRSGSQK 552
                +  ALL+ C +H     D E  R  ++K
Sbjct: 890 AANTIVLTALLAACRVH----GDVERARRVAEK 918



 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 154/525 (29%), Positives = 258/525 (49%), Gaps = 31/525 (5%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTM 74
           Y K G +  A   F  +  ++VVSW+++I  YS +G    S++ F  M+L G  PNS T 
Sbjct: 55  YVKCGCLDGAVQTFARMKRRDVVSWTVMIGAYSQDGKFSLSLQLFREMLLEGTAPNSVTF 114

Query: 75  VGVLVAAAGLQNLELARSIHGLMVKFGLESDL-----------------------FEGLK 111
           V +L        LE  R IH L+V+  LES +                       F  +K
Sbjct: 115 VSILSGCEAPSLLEQGRQIHALVVESSLESHVVVANSLLGMYSRCRSWEDSRMQTFARMK 174

Query: 112 NPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCEL 171
              +VS   ++  +  +  F  ++ LF      G  PN+VT ++++ GC A         
Sbjct: 175 RRDVVSWTVMIGAYSQDGKFSLSIQLFREMLLEGTAPNSVTFVSILSGCEAPSLLEQGRQ 234

Query: 172 IHGLTIKLGL--ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDF 229
           IH L ++  L   LD+ V N  ++MY     LD A+Q F  M+ +DV+SWT M+G +   
Sbjct: 235 IHALVVESSLESHLDIGVLNLTINMYVKCGCLDGAVQTFARMKRRDVVSWTVMIGAYSQD 294

Query: 230 EYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLS 289
                +L++FREM       ++V  ++++S       L++G+Q+HA VV   L+S + ++
Sbjct: 295 GKFSLSLQLFREMLLEGTAPNSVTFVSILSGCEAPSLLEQGRQIHALVVESSLESHVVVA 354

Query: 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISG-YVQNGCAREALNQFIKMRQEKT 348
           NS++ MYS+C   + SRS+F++++ +  VSW+ II     ++   R+AL  +  M  E  
Sbjct: 355 NSLLGMYSRCRSWEDSRSLFDRMSVRDSVSWSTIIMACSREDSHCRDALPLYRSMLHEGV 414

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
               ++ L  +L A G LA L+    +H    E+G      V   L++ Y+KCG V  A 
Sbjct: 415 -MPKTLALSMVLEACGSLAELKGGKLVHAHVIESGL-EGDLVGISLVNMYAKCGTVGEAR 472

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
            VF+ +   R  + WN++I  Y      E AL L+ +M   G  PD  T++++LNAC +A
Sbjct: 473 KVFDRINN-RSRILWNSMITAYQEKDPHE-ALHLFREMQPEGVSPDRITFMTVLNACVNA 530

Query: 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL 513
               +G  I  ++++       +     + ++ A+ G L +A G+
Sbjct: 531 ADLENGRTIHTRIVDSGFAADVRVATA-LFNMYAKCGSLGEARGV 574



 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 112/344 (32%), Positives = 181/344 (52%), Gaps = 5/344 (1%)

Query: 145 GLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAA 204
           G+ P+ V + T++  C  LG+    +LI        L LD+ V N  ++MY     LD A
Sbjct: 5   GIPPDRVMIKTLLTACTKLGALEEGKLIQDRLAGTQLELDIGVRNLTINMYVKCGCLDGA 64

Query: 205 IQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAIL 264
           +Q F  M+ +DV+SWT M+G +        +L++FREM       ++V  ++++S     
Sbjct: 65  VQTFARMKRRDVVSWTVMIGAYSQDGKFSLSLQLFREMLLEGTAPNSVTFVSILSGCEAP 124

Query: 265 GDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSR-SVFNQITEKSLVSWTAI 323
             L++G+Q+HA VV   L+S + ++NS++ MYS+C   + SR   F ++  + +VSWT +
Sbjct: 125 SLLEQGRQIHALVVESSLESHVVVANSLLGMYSRCRSWEDSRMQTFARMKRRDVVSWTVM 184

Query: 324 ISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG 383
           I  Y Q+G    ++  F +M  E T + +S+T VSIL+     + LE   Q+H +  E+ 
Sbjct: 185 IGAYSQDGKFSLSIQLFREMLLEGT-APNSVTFVSILSGCEAPSLLEQGRQIHALVVESS 243

Query: 384 FPRYRS--VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALA 441
              +    V N  I+ Y KCG +D A   F  M   RDVVSW  +I  Y  +G    +L 
Sbjct: 244 LESHLDIGVLNLTINMYVKCGCLDGAVQTFARMK-RRDVVSWTVMIGAYSQDGKFSLSLQ 302

Query: 442 LYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEEN 485
           L+ +M   G  P+S T++SIL+ C    L   G  I   ++E +
Sbjct: 303 LFREMLLEGTAPNSVTFVSILSGCEAPSLLEQGRQIHALVVESS 346



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 113/481 (23%), Positives = 223/481 (46%), Gaps = 31/481 (6%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L++ Y K G + EA  +FD I  ++ + W+ +I  Y     HE ++  F  M   G+ P+
Sbjct: 458 LVNMYAKCGTVGEARKVFDRINNRSRILWNSMITAYQEKDPHE-ALHLFREMQPEGVSPD 516

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------------FE 108
             T + VL A     +LE  R+IH  +V  G  +D+                      F+
Sbjct: 517 RITFMTVLNACVNAADLENGRTIHTRIVDSGFAADVRVATALFNMYAKCGSLGEARGVFD 576

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            +    +VS N ++A ++  +  + A+ L    +  G+ P+  T  +++  C        
Sbjct: 577 SMVFRDVVSWNNMIAAYVQGRDGEGAISLCWAMQLEGMRPDKATFTSLLNACSDPNRLVD 636

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM------ECKDVISWTRM 222
              IH    +  L  D+ +   ++ MY+    L+ A +IF  +        +D+  WT M
Sbjct: 637 GRQIHSWIAESRLENDIVMVTGLITMYANCGSLNNAREIFDNIFSNSRQHHRDLFLWTSM 696

Query: 223 MGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL 282
           +  +        AL+++ +M   ++  D V  +++++  A L DL++G+ +HA+V+  GL
Sbjct: 697 ITAYEQHGEYRKALELYEQMHSRQVEADRVTFISVLNACAHLSDLRQGQAIHARVMRRGL 756

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
            +++ ++NSI+ MY KCG  D +  VF +   K +  WTA+I+ Y ++G   +AL  F +
Sbjct: 757 ATDVAVANSIVFMYGKCGSFDEASIVFEKTKHKDISLWTALIASYARHGHGEQALWIFRR 816

Query: 343 MRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
           +RQ+  + + ++T V++L+A   +  +E   +      E G        +CL+   ++ G
Sbjct: 817 LRQDGIE-LSNLTFVAMLSACSHVGLIEEGCEFFASMAELGIEPNMEHHSCLVDLLARAG 875

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
           ++  A      M    + +    ++    V+G  E A  +  K+ E  +    + Y+++ 
Sbjct: 876 HLHTAEEFLSRMPVAANTIVLTALLAACRVHGDVERARRVAEKL-EALDPESEAPYVTLS 934

Query: 463 N 463
           N
Sbjct: 935 N 935


>gi|225463207|ref|XP_002267970.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08490-like [Vitis vinifera]
          Length = 868

 Score =  241 bits (616), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 173/590 (29%), Positives = 287/590 (48%), Gaps = 67/590 (11%)

Query: 11  LLSNYFKSGKI-KEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLP 69
           L+S Y K G +  +A   F+ I  K+VVSW+ VI G+S N F E++ K F  M+   + P
Sbjct: 182 LISMYAKCGLVCSDAYAAFNRIEFKDVVSWNAVIAGFSENKFTEEAFKLFHAMLKGPIQP 241

Query: 70  NSFTMVGVLVAAAGLQN---LELARSIH-GLMVKFGLESD-------------------- 105
           N  T+  +L   A L+        + +H  ++ +  L  D                    
Sbjct: 242 NYATIASILPVCASLEENAGYRYGKEVHCHVLRRMELVEDVSVINSLMSFYLRIGQMEKA 301

Query: 106 --LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFN-FFRGSGLVPNAVTMLTVIRGCVA 162
             LF  +K+  LVS NAI+AG+ +N  + +A+ LF+ F     + P++VT+++V+  C  
Sbjct: 302 EFLFRNMKSRDLVSWNAIIAGYASNGEWLKALELFSEFISLETIKPDSVTLVSVLPACAH 361

Query: 163 LGSRALCELIHGLTIK-LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
           + +  + + IHG  I+  GL  D SV N++L  Y+      AA+Q F  +  KD+ISW  
Sbjct: 362 VHNLQVAKGIHGYIIRHPGLREDTSVGNALLSFYAKCNYTQAALQTFLMISRKDLISWNA 421

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA-QVVLG 280
           ++  F +       + +   M +  I  D++ +L +I   A +  +K+ K+ H+  +  G
Sbjct: 422 ILDAFTESGCETHLVNLLHWMLREGIRPDSITILTIIQYYAAVSRVKKVKETHSYSIRFG 481

Query: 281 GLQSEL--RLSNSIIAMYSKCGDL--------------------------------DSSR 306
            LQ +    L N ++  Y+KCG++                                D + 
Sbjct: 482 LLQGDAGPTLGNGMLDAYAKCGNMKYAVNIFGSLSEKRNVVTCNSMISGYVNSSSHDDAY 541

Query: 307 SVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGEL 366
           ++FN ++E  L +W  ++  Y +N    +AL+ F ++ Q +    D +T++SIL A   +
Sbjct: 542 AIFNTMSETDLTTWNLMVRVYAENDFPDQALSLFHEL-QGQGMKPDIVTIMSILPACAHM 600

Query: 367 AALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTI 426
           A++ +  Q HG    A F   R +    I  YSKCG+V  AY +F      +D+V +  +
Sbjct: 601 ASVHMLRQCHGYVIRACFNDVR-LNGAFIDMYSKCGSVFGAYKLFLSSP-QKDLVMFTAM 658

Query: 427 IYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENK 486
           + G+ ++G GE AL ++  M E G  PD     ++L AC HAGL ++G  IFN + + + 
Sbjct: 659 VGGFAMHGMGEEALRIFSYMLELGVKPDHVIITAVLFACSHAGLVDEGWKIFNSIEKVHG 718

Query: 487 VKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
            +P+ E Y CVVDLLAR G + DA     ++      NIW  LL  C  H
Sbjct: 719 FQPTMEQYACVVDLLARGGRIKDAYTFVTRMPIEANANIWGTLLGACRTH 768



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 139/523 (26%), Positives = 251/523 (47%), Gaps = 69/523 (13%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKS-MKAFSHM-MLSGLL 68
           LL+ Y KSG +     LF E+ +++ V W+IV+ G +    HE   M+ F  M M++   
Sbjct: 80  LLNLYAKSGALDYCNKLFGEMDQRDPVIWNIVLSGLAGFQSHEAEVMRLFRAMHMVNEAK 139

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG------------------- 109
           PNS T+  VL   A L+  +  +S+H  ++K GLES    G                   
Sbjct: 140 PNSVTIAIVLPVCARLRE-DAGKSVHSYVIKSGLESHTLAGNALISMYAKCGLVCSDAYA 198

Query: 110 ----LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL-- 163
               ++   +VS NA++AGF  NK  ++A  LF+      + PN  T+ +++  C +L  
Sbjct: 199 AFNRIEFKDVVSWNAVIAGFSENKFTEEAFKLFHAMLKGPIQPNYATIASILPVCASLEE 258

Query: 164 --GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
             G R   E+   +  ++ L+ DVSV NS++  Y  +  ++ A  +FR M+ +D++SW  
Sbjct: 259 NAGYRYGKEVHCHVLRRMELVEDVSVINSLMSFYLRIGQMEKAEFLFRNMKSRDLVSWNA 318

Query: 222 MMGLFVDFEYAGDALKIFRE-MRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL- 279
           ++  +        AL++F E +    I  D+V L++++   A + +L+  K +H  ++  
Sbjct: 319 IIAGYASNGEWLKALELFSEFISLETIKPDSVTLVSVLPACAHVHNLQVAKGIHGYIIRH 378

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            GL+ +  + N++++ Y+KC    ++   F  I+ K L+SW AI+  + ++GC    +N 
Sbjct: 379 PGLREDTSVGNALLSFYAKCNYTQAALQTFLMISRKDLISWNAILDAFTESGCETHLVNL 438

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPR---YRSVQNCLIS 396
              M +E     DSIT+++I+     ++ ++   + H  +   G  +     ++ N ++ 
Sbjct: 439 LHWMLREGIRP-DSITILTIIQYYAAVSRVKKVKETHSYSIRFGLLQGDAGPTLGNGMLD 497

Query: 397 SYSKCGNV--------------------------------DLAYIVFEEMGFLRDVVSWN 424
           +Y+KCGN+                                D AY +F  M    D+ +WN
Sbjct: 498 AYAKCGNMKYAVNIFGSLSEKRNVVTCNSMISGYVNSSSHDDAYAIFNTMS-ETDLTTWN 556

Query: 425 TIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
            ++  Y  N   + AL+L+H++   G  PD  T +SIL AC H
Sbjct: 557 LMVRVYAENDFPDQALSLFHELQGQGMKPDIVTIMSILPACAH 599



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 122/441 (27%), Positives = 200/441 (45%), Gaps = 58/441 (13%)

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGF 125
           G  PN   +  +L +   +  +     +HG  +K G              VSC ++  G 
Sbjct: 34  GYKPNGQILAALLKSCVAISAIRFGSVLHGYALKLGH-------------VSCQSLCKGL 80

Query: 126 IN-----------NKLF----QQAVLLFN------------------FFRGSGLV----P 148
           +N           NKLF    Q+  +++N                   FR   +V    P
Sbjct: 81  LNLYAKSGALDYCNKLFGEMDQRDPVIWNIVLSGLAGFQSHEAEVMRLFRAMHMVNEAKP 140

Query: 149 NAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYS-CLMDLDAAIQI 207
           N+VT+  V+  C  L   A  + +H   IK GL       N+++ MY+ C +    A   
Sbjct: 141 NSVTIAIVLPVCARLREDA-GKSVHSYVIKSGLESHTLAGNALISMYAKCGLVCSDAYAA 199

Query: 208 FREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGD- 266
           F  +E KDV+SW  ++  F + ++  +A K+F  M K  I  +   + +++ V A L + 
Sbjct: 200 FNRIEFKDVVSWNAVIAGFSENKFTEEAFKLFHAMLKGPIQPNYATIASILPVCASLEEN 259

Query: 267 --LKRGKQLHAQVVLG-GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAI 323
              + GK++H  V+    L  ++ + NS+++ Y + G ++ +  +F  +  + LVSW AI
Sbjct: 260 AGYRYGKEVHCHVLRRMELVEDVSVINSLMSFYLRIGQMEKAEFLFRNMKSRDLVSWNAI 319

Query: 324 ISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHG-IAFEA 382
           I+GY  NG   +AL  F +    +T   DS+TLVS+L A   +  L++   +HG I    
Sbjct: 320 IAGYASNGEWLKALELFSEFISLETIKPDSVTLVSVLPACAHVHNLQVAKGIHGYIIRHP 379

Query: 383 GFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALAL 442
           G     SV N L+S Y+KC     A   F  M   +D++SWN I+  +  +G     + L
Sbjct: 380 GLREDTSVGNALLSFYAKCNYTQAALQTF-LMISRKDLISWNAILDAFTESGCETHLVNL 438

Query: 443 YHKMTETGEVPDSSTYLSILN 463
            H M   G  PDS T L+I+ 
Sbjct: 439 LHWMLREGIRPDSITILTIIQ 459



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 114/479 (23%), Positives = 219/479 (45%), Gaps = 62/479 (12%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM-LSGL 67
           + L+S Y + G++++AE LF  +  +++VSW+ +I GY+ NG   K+++ FS  + L  +
Sbjct: 286 NSLMSFYLRIGQMEKAEFLFRNMKSRDLVSWNAIIAGYASNGEWLKALELFSEFISLETI 345

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKF-GLESD--------------------- 105
            P+S T+V VL A A + NL++A+ IHG +++  GL  D                     
Sbjct: 346 KPDSVTLVSVLPACAHVHNLQVAKGIHGYIIRHPGLREDTSVGNALLSFYAKCNYTQAAL 405

Query: 106 -LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
             F  +    L+S NAI+  F  +      V L ++    G+ P+++T+LT+I+   A+ 
Sbjct: 406 QTFLMISRKDLISWNAILDAFTESGCETHLVNLLHWMLREGIRPDSITILTIIQYYAAVS 465

Query: 165 SRALCELIHGLTIKLGLI---LDVSVNNSVLDMYSCLMDL-------------------- 201
                +  H  +I+ GL+      ++ N +LD Y+   ++                    
Sbjct: 466 RVKKVKETHSYSIRFGLLQGDAGPTLGNGMLDAYAKCGNMKYAVNIFGSLSEKRNVVTCN 525

Query: 202 ------------DAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIIC 249
                       D A  IF  M   D+ +W  M+ ++ + ++   AL +F E++   +  
Sbjct: 526 SMISGYVNSSSHDDAYAIFNTMSETDLTTWNLMVRVYAENDFPDQALSLFHELQGQGMKP 585

Query: 250 DTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVF 309
           D V +++++   A +  +   +Q H  V+     +++RL+ + I MYSKCG +  +  +F
Sbjct: 586 DIVTIMSILPACAHMASVHMLRQCHGYVIRACF-NDVRLNGAFIDMYSKCGSVFGAYKLF 644

Query: 310 NQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAAL 369
               +K LV +TA++ G+  +G   EAL  F  M +      D + + ++L A      +
Sbjct: 645 LSSPQKDLVMFTAMVGGFAMHGMGEEALRIFSYMLELGVKP-DHVIITAVLFACSHAGLV 703

Query: 370 EICLQL-HGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
           +   ++ + I    GF        C++   ++ G +  AY     M    +   W T++
Sbjct: 704 DEGWKIFNSIEKVHGFQPTMEQYACVVDLLARGGRIKDAYTFVTRMPIEANANIWGTLL 762



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/267 (20%), Positives = 115/267 (43%), Gaps = 37/267 (13%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + ++S Y  S    +A  +F+ + E ++ +W++++  Y+ N F ++++  F  +   G+ 
Sbjct: 525 NSMISGYVNSSSHDDAYAIFNTMSETDLTTWNLMVRVYAENDFPDQALSLFHELQGQGMK 584

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVK----------------------FGLESDL 106
           P+  T++ +L A A + ++ + R  HG +++                      FG    L
Sbjct: 585 PDIVTIMSILPACAHMASVHMLRQCHGYVIRACFNDVRLNGAFIDMYSKCGSVFG-AYKL 643

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           F       LV   A+V GF  + + ++A+ +F++    G+ P+ V +  V+  C   G  
Sbjct: 644 FLSSPQKDLVMFTAMVGGFAMHGMGEEALRIFSYMLELGVKPDHVIITAVLFACSHAGL- 702

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
               +  G  I    I  V      ++ Y+C++DL A     R    KD  ++   M + 
Sbjct: 703 ----VDEGWKI-FNSIEKVHGFQPTMEQYACVVDLLA-----RGGRIKDAYTFVTRMPIE 752

Query: 227 VDFEYAGD---ALKIFREMRKSRIICD 250
            +    G    A +   E+   R++ D
Sbjct: 753 ANANIWGTLLGACRTHHEVELGRVVAD 779


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  241 bits (616), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 157/564 (27%), Positives = 287/564 (50%), Gaps = 27/564 (4%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           +KL    F  G  + A  LF  +P+ ++  ++++I G+S +     S+  ++H++ +  L
Sbjct: 44  TKLTQKLFDVGATRHARALFFSVPKPDIFLFNVLIKGFSFSP-DASSISFYTHLLKNTTL 102

Query: 69  -PNSFTMVGVLVAAA----GL------------QNLELARSIHGLMVKF---GLESDLFE 108
            P++FT    + A+     G+             NL +A ++  L  KF        +F+
Sbjct: 103 SPDNFTYAFAISASPDDNLGMCLHAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFD 162

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            + +   V  N ++ G + N  +  +V +F      G+  ++ T+ TV+     +    +
Sbjct: 163 KMPDRDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKV 222

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
              I  L +KLG   D  V   ++ ++S   D+D A  +F  +   D++S+  ++  F  
Sbjct: 223 GMGIQCLALKLGFHFDDYVLTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSC 282

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
                 A+K FRE+  S     +  ++ LI V++  G L     +    V  G   +  +
Sbjct: 283 NGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSV 342

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
           S ++  +YS+  ++D +R +F++ +EK++ +W A+ISGY Q+G    A++ F +M   + 
Sbjct: 343 STALTTIYSRLNEIDLARQLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEF 402

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
            + + +T+ SIL+A  +L AL     +H +       +   V   LI  Y+KCGN+  A 
Sbjct: 403 -TPNPVTITSILSACAQLGALSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEAS 461

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
            +F+ +   ++ V+WNT+I+GYG++G+G+ AL L+++M   G  P S T+LS+L AC HA
Sbjct: 462 QLFD-LTSEKNTVTWNTMIFGYGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYACSHA 520

Query: 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRA 528
           GL  +G  IF+ M+ + +++P  EHY C+VD+L RAG L  A     K+    GP +W  
Sbjct: 521 GLVREGDEIFHAMVNKYRIEPLAEHYACMVDILGRAGQLEKALEFIRKMPVEPGPAVWGT 580

Query: 529 LLSGCVLHVGRFQDAEALRSGSQK 552
           LL  C++H    +D    R  S++
Sbjct: 581 LLGACMIH----KDTNLARVASER 600



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 124/463 (26%), Positives = 216/463 (46%), Gaps = 34/463 (7%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           + +S L+  Y K  ++  A  +FD++P+++ V W+ +I G   N  ++ S++ F  M+  
Sbjct: 139 FVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQ 198

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-------------------- 105
           G+  +S T+  VL A A +Q +++   I  L +K G   D                    
Sbjct: 199 GVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVLTGLISVFSKCEDVDTA 258

Query: 106 --LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
             LF  ++ P LVS NA+++GF  N   + AV  F     SG   ++ TM+ +I      
Sbjct: 259 RLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSPF 318

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
           G   L   I G  +K G IL  SV+ ++  +YS L ++D A Q+F E   K V +W  M+
Sbjct: 319 GHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQLFDESSEKTVAAWNAMI 378

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
             +        A+ +F+EM  +    + V + +++S  A LG L  GK +H  +    L+
Sbjct: 379 SGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGALSFGKSVHQLIKSKNLE 438

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
             + +S ++I MY+KCG++  +  +F+  +EK+ V+W  +I GY  +G   EAL  F +M
Sbjct: 439 QNIYVSTALIDMYAKCGNISEASQLFDLTSEKNTVTWNTMIFGYGLHGYGDEALKLFNEM 498

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYR-----SVQNCLISSY 398
                    S+T +S+L A      +    ++    F A   +YR         C++   
Sbjct: 499 LHLGFQP-SSVTFLSVLYACSHAGLVREGDEI----FHAMVNKYRIEPLAEHYACMVDIL 553

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALA 441
            + G ++ A     +M        W T++    +  H +T LA
Sbjct: 554 GRAGQLEKALEFIRKMPVEPGPAVWGTLLGACMI--HKDTNLA 594



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 145/297 (48%), Gaps = 23/297 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + L+S + K   +  A  LF  I + ++VS++ +I G+S NG  E ++K F  ++
Sbjct: 238 DDYVLTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELL 297

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG---------------------- 101
           +SG   +S TMVG++  ++   +L LA  I G  VK G                      
Sbjct: 298 VSGQRVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEID 357

Query: 102 LESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
           L   LF+      + + NA+++G+  + L + A+ LF     +   PN VT+ +++  C 
Sbjct: 358 LARQLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACA 417

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            LG+ +  + +H L     L  ++ V+ +++DMY+   ++  A Q+F     K+ ++W  
Sbjct: 418 QLGALSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEKNTVTWNT 477

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQL-HAQV 277
           M+  +    Y  +ALK+F EM        +V  L+++   +  G ++ G ++ HA V
Sbjct: 478 MIFGYGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYACSHAGLVREGDEIFHAMV 534



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 112/253 (44%), Gaps = 38/253 (15%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           + P  S+ L + Y +  +I  A  LFDE  EK V +W+ +I GY+ +G  E ++  F  M
Sbjct: 338 LQPSVSTALTTIYSRLNEIDLARQLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEM 397

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE------------------- 103
           M +   PN  T+  +L A A L  L   +S+H L+    LE                   
Sbjct: 398 MTTEFTPNPVTITSILSACAQLGALSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNI 457

Query: 104 ---SDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
              S LF+       V+ N ++ G+  +    +A+ LFN     G  P++VT L+V+  C
Sbjct: 458 SEASQLFDLTSEKNTVTWNTMIFGYGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYAC 517

Query: 161 VALG-SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMD-------LDAAIQIFREME 212
              G  R   E+ H +  K  +         + + Y+C++D       L+ A++  R+M 
Sbjct: 518 SHAGLVREGDEIFHAMVNKYRI-------EPLAEHYACMVDILGRAGQLEKALEFIRKMP 570

Query: 213 CKDVIS-WTRMMG 224
            +   + W  ++G
Sbjct: 571 VEPGPAVWGTLLG 583


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  241 bits (616), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 165/596 (27%), Positives = 289/596 (48%), Gaps = 78/596 (13%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           YN+  ++S Y ++G+ + A  LFDE+PE+++VSW+++I GY  N    K+ + F  M   
Sbjct: 93  YNA--MISGYLRNGEFELARMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERM--- 147

Query: 66  GLLPNSFTMVGVLVAAAGLQN--LELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVA 123
              P         + +   QN  ++ AR +             F+ +     VS NA+++
Sbjct: 148 ---PERDVCSWNTILSGYAQNGCVDDARRV-------------FDRMPEKNDVSWNALLS 191

Query: 124 GFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLIL 183
            ++ N   ++A +LF       LV     +   ++    + +R   + +         + 
Sbjct: 192 AYVQNSKLEEACVLFGSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMK--------VR 243

Query: 184 DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMR 243
           DV   N+++  Y+   ++D A Q+F E    DV +WT M+  ++      +A ++F    
Sbjct: 244 DVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVEEARELF---- 299

Query: 244 KSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLS--NSIIAMYSKCGD 301
                 D +   N +S NA+L    +G+++     L  +     +S  N++I  Y++CG 
Sbjct: 300 ------DRMPERNEVSWNAMLAGYVQGERVEMAKELFDVMPCRNVSTWNTMITGYAQCGK 353

Query: 302 LDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILT 361
           +  ++++F+++ ++  VSW A+I+GY Q+G + EAL  F+ M +E    ++  +  S L+
Sbjct: 354 ISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMERE-GGRLNRSSFSSALS 412

Query: 362 ASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVV 421
              ++ ALE+  QLHG   + G+     V N L+  Y KCG+++ A  +F+EM   +D+V
Sbjct: 413 TCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAG-KDIV 471

Query: 422 SWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQM 481
           SWNT+I GY  +G GE AL  +  M   G  PD +T +++L+AC H GL + G   F+ M
Sbjct: 472 SWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTM 531

Query: 482 IEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH----- 536
            ++  V+P+ +HY C+VDLL RAG L +A  L   +       IW  LL    +H     
Sbjct: 532 TQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGNTEL 591

Query: 537 ----------------------------VGRFQDAEALRSGSQKKGIIKIPGISFL 564
                                        GR+ D   LR   + KG+ K+PG S++
Sbjct: 592 AETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWI 647



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 88/409 (21%), Positives = 178/409 (43%), Gaps = 35/409 (8%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           +++ Y ++G+I EA  LFDE P  +V +W+ ++ GY  N   E++ + F  M       N
Sbjct: 251 IITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVEEARELFDRMPER----N 306

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMV------------------KFGLESDLFEGLKN 112
             +   +L      + +E+A+ +  +M                   K     +LF+ +  
Sbjct: 307 EVSWNAMLAGYVQGERVEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPK 366

Query: 113 PYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELI 172
              VS  A++AG+  +    +A+ LF      G   N  +  + +  C  + +  L + +
Sbjct: 367 RDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALELGKQL 426

Query: 173 HGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYA 232
           HG  +K G      V N++L MY     ++ A  +F+EM  KD++SW  M+  +    + 
Sbjct: 427 HGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFG 486

Query: 233 GDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQ-LHAQVVLGGLQSELRLSNS 291
            +AL+ F  M++  +  D   ++ ++S  +  G + +G+Q  H      G++   +    
Sbjct: 487 EEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYAC 546

Query: 292 IIAMYSKCGDLDSSRSVF-NQITEKSLVSWTAIISGYVQNG---CAREALNQFIKMRQEK 347
           ++ +  + G L+ + ++  N   E     W  ++     +G    A  A ++   M  E 
Sbjct: 547 MVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPEN 606

Query: 348 TDSVDSITLVSILTAS----GELAALEICLQLHGIAFEAGFPRYRSVQN 392
           +       L+S L AS    G++  L + ++  G+    G+  +  +QN
Sbjct: 607 S---GMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYS-WIEIQN 651



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 108/224 (48%), Gaps = 30/224 (13%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           PC +    + +++ Y + GKI EA+NLFD++P+++ VSW+ +I GYS +G   ++++ F 
Sbjct: 334 PCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFV 393

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES---------------- 104
            M   G   N  +    L   A +  LEL + +HG +VK G E+                
Sbjct: 394 LMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCG 453

Query: 105 ------DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                 DLF+ +    +VS N ++AG+  +   ++A+  F   +  GL P+  TM+ V+ 
Sbjct: 454 SIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLS 513

Query: 159 GCVALG-SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDL 201
            C   G      +  H +T   G    V  N+     Y+C++DL
Sbjct: 514 ACSHTGLVDKGRQYFHTMTQDYG----VRPNSQ---HYACMVDL 550



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 74/175 (42%), Gaps = 47/175 (26%)

Query: 314 EKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICL 373
           +  +  W   IS Y++ G   EAL  F +M                              
Sbjct: 56  DSDIKEWNVAISSYMRTGRCSEALRVFKRM------------------------------ 85

Query: 374 QLHGIAFEAGFPRYRSVQ-NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGV 432
                      PR+ SV  N +IS Y + G  +LA ++F+EM   RD+VSWN +I GY  
Sbjct: 86  -----------PRWSSVSYNAMISGYLRNGEFELARMLFDEMP-ERDLVSWNVMIKGYVR 133

Query: 433 NGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKV 487
           N +   A  L+ +M E     D  ++ +IL+     G  +D   +F++M E+N V
Sbjct: 134 NRNLGKARELFERMPER----DVCSWNTILSGYAQNGCVDDARRVFDRMPEKNDV 184



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 108/259 (41%), Gaps = 62/259 (23%)

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNG---CAREALNQ- 339
           S+++  N  I+ Y + G    +  VF ++   S VS+ A+ISGY++NG    AR   ++ 
Sbjct: 57  SDIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDEM 116

Query: 340 --------------FIKMRQ--------EKTDSVDSITLVSILTASGELAALEICLQL-- 375
                         +++ R         E+    D  +  +IL+   +   ++   ++  
Sbjct: 117 PERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQNGCVDDARRVFD 176

Query: 376 -----HGIAFEAGFPRYRSVQN----------------------CLISSYSKCGNVDLAY 408
                + +++ A    Y  VQN                      CL+  + K   +  A 
Sbjct: 177 RMPEKNDVSWNALLSAY--VQNSKLEEACVLFGSRENWALVSWNCLLGGFVKKKKIVEAR 234

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
             F+ M  +RDVVSWNTII GY  NG  + A  L+    +   V D  T+ ++++     
Sbjct: 235 QFFDSMK-VRDVVSWNTIITGYAQNGEIDEARQLF----DESPVHDVFTWTAMVSGYIQN 289

Query: 469 GLTNDGLVIFNQMIEENKV 487
            +  +   +F++M E N+V
Sbjct: 290 RMVEEARELFDRMPERNEV 308


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  241 bits (615), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 160/572 (27%), Positives = 287/572 (50%), Gaps = 31/572 (5%)

Query: 11  LLSNYFKSGKIKEAENLFDEI--PEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           L++ Y K G +  A  LFD I   +++ VSW+ +I  +   G   +++  F  M   G+ 
Sbjct: 186 LIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVA 245

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------------- 106
            N++T V  L        ++L   IHG ++K    +D+                      
Sbjct: 246 SNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRV 305

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           FE +     VS N +++G + N+L+  A+  F   + SG  P+ V++L +I      G+ 
Sbjct: 306 FESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNL 365

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
              + +H   I+ GL  ++ + N+++DMY+    +      F  M  KD+ISWT ++  +
Sbjct: 366 LKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGY 425

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
              E+  +A+ +FR+++   +  D + + +++   + L      +++H  V    L +++
Sbjct: 426 AQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDL-ADI 484

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            L N+I+ +Y + G +D +R  F  I  K +VSWT++I+  V NG   EAL  F  ++Q 
Sbjct: 485 MLQNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQT 544

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
                DSI ++S L+A+  L++L+   ++HG     GF     + + L+  Y+ CG V+ 
Sbjct: 545 NIQP-DSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVEN 603

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           +  +F  +   RD++ W ++I   G++G G  A+AL+ KMT+   +PD  T+L++L AC 
Sbjct: 604 SRKMFHSVK-QRDLILWTSMINANGMHGCGNKAIALFKKMTDQNVIPDHITFLALLYACS 662

Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIW 526
           H+GL  +G   F  M    +++P  EHY C+VDLL+R+  L +A      +       IW
Sbjct: 663 HSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYHFVRNMPIKPSSEIW 722

Query: 527 RALLSGCVLH----VGRFQDAEALRSGSQKKG 554
            ALL  C +H    +G     E L+S ++  G
Sbjct: 723 CALLGACHIHSNKELGELAAKELLQSDTENSG 754



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 142/481 (29%), Positives = 247/481 (51%), Gaps = 27/481 (5%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++KL+  Y K G +++A  +FDE+ E+ + SW+ ++  +  +G + ++++ +  M + G+
Sbjct: 82  ATKLVLMYGKCGSLRDAVKVFDEMSERTIFSWNALMGAFVSSGKYLEAIELYKDMRVLGV 141

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVK----------------FGLESDL----- 106
             ++ T   VL A   L    L   IHG+ VK                +G   DL     
Sbjct: 142 AIDACTFPSVLKACGALGESRLGAEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARV 201

Query: 107 -FEG--LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
            F+G  ++    VS N+I++  +      +A+ LF   +  G+  N  T +  ++G    
Sbjct: 202 LFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDP 261

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
               L   IHG  +K     DV V N+++ MY+    ++ A ++F  M C+D +SW  ++
Sbjct: 262 SFVKLGMGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLL 321

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
              V  E   DAL  FR+M+ S    D V++LNLI+ +   G+L +GK++HA  +  GL 
Sbjct: 322 SGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLD 381

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
           S +++ N+++ MY+KC  +      F  + EK L+SWT II+GY QN    EA+N F K+
Sbjct: 382 SNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKV 441

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
           + +  D VD + + S+L A   L +     ++HG  F+        +QN +++ Y + G+
Sbjct: 442 QVKGMD-VDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLADIM-LQNAIVNVYGEVGH 499

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           +D A   FE +   +D+VSW ++I     NG    AL L++ + +T   PDS   +S L+
Sbjct: 500 IDYARRAFESIRS-KDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALS 558

Query: 464 A 464
           A
Sbjct: 559 A 559



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 119/496 (23%), Positives = 245/496 (49%), Gaps = 32/496 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y ++ L++ Y K G++++A  +F+ +  ++ VSW+ ++ G   N  +  ++  F  M 
Sbjct: 282 DVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQ 341

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------- 106
            SG  P+  +++ ++ A+    NL   + +H   ++ GL+S++                 
Sbjct: 342 NSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVK 401

Query: 107 -----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                FE +    L+S   I+AG+  N+   +A+ LF   +  G+  + + + +V+R C 
Sbjct: 402 YMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACS 461

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            L SR     IHG   K  L  D+ + N+++++Y  +  +D A + F  +  KD++SWT 
Sbjct: 462 GLKSRNFIREIHGYVFKRDLA-DIMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTS 520

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+   V      +AL++F  ++++ I  D++A+++ +S  A L  LK+GK++H  ++  G
Sbjct: 521 MITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKG 580

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
              E  +++S++ MY+ CG +++SR +F+ + ++ L+ WT++I+    +GC  +A+  F 
Sbjct: 581 FFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNKAIALFK 640

Query: 342 KMRQEKTDSVDSITLVSILTA---SGELAALEICLQLHGIAFE-AGFPRYRSVQNCLISS 397
           KM  +     D IT +++L A   SG +   +   ++    ++   +P + +   C++  
Sbjct: 641 KMTDQNVIP-DHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYA---CMVDL 696

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
            S+  +++ AY     M        W  ++    ++ + E    L  K     +  +S  
Sbjct: 697 LSRSNSLEEAYHFVRNMPIKPSSEIWCALLGACHIHSNKELG-ELAAKELLQSDTENSGK 755

Query: 458 YLSILNACGHAGLTND 473
           Y  I N     G  ND
Sbjct: 756 YALISNIFAADGRWND 771


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  241 bits (615), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 169/635 (26%), Positives = 288/635 (45%), Gaps = 130/635 (20%)

Query: 5   PYNSSKLLSN----YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           PY  + LL+N    Y K G I  A  +FD++P  N+ SW+ +             + A+S
Sbjct: 40  PYPETFLLNNLISSYAKLGSIPYACKVFDQMPHPNLYSWNTI-------------LSAYS 86

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNA 120
            +                     +  +E                 LF+ +     VS N+
Sbjct: 87  KL-------------------GRVSEMEY----------------LFDAMPRRDGVSWNS 111

Query: 121 IVAGFINNKLFQQAVLLFNF-------FRGSGLVPNAVTMLTVIRGCVALGSRALCELIH 173
           +++G+    L  Q+V  +N        F  + +  + + +L   RGCV LG +     IH
Sbjct: 112 LISGYAGCGLIYQSVKAYNLMLKNDGSFNLNRITFSTLLILASKRGCVKLGRQ-----IH 166

Query: 174 GLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFRE----------------MEC---- 213
           G  +K G +  V V + ++DMYS +  +  A ++F E                M C    
Sbjct: 167 GHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVE 226

Query: 214 -----------KDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNA 262
                      +D ISWT M+  F       DA+ IFREM+   +  D     ++++   
Sbjct: 227 DSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACG 286

Query: 263 ILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTA 322
            +  L+ GKQ+HA ++    +  + ++++++ MY KC ++ S+ +VF ++T K++VSWTA
Sbjct: 287 GVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTA 346

Query: 323 IISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEA 382
           ++ GY QNG + EA+  F  M++   +  D  TL S++++   LA+LE   Q H  A  +
Sbjct: 347 MLVGYGQNGYSEEAVKTFSDMQKYGIEP-DDFTLGSVISSCANLASLEEGAQFHARALTS 405

Query: 383 GFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALAL 442
           G   + +V N L++ Y KCG+++ ++ +F E+ F +D V+W  ++ GY   G     + L
Sbjct: 406 GLISFITVSNALVTLYGKCGSIEDSHRLFNEISF-KDEVTWTALVSGYAQFGKANETIGL 464

Query: 443 YHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLA 502
           +  M   G  PD  T++ +L+AC  AGL   G  IF  MI E+ + P Q+HY C++DL +
Sbjct: 465 FESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQDHYTCMIDLFS 524

Query: 503 RAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH-------------------------- 536
           RAG + +A     K+        W  LLS C  +                          
Sbjct: 525 RAGRIEEARNFINKMPFSPDAISWATLLSSCRFYGNMDIGKWAAEFLMELDPHNTASYVL 584

Query: 537 -------VGRFQDAEALRSGSQKKGIIKIPGISFL 564
                   G++++   LR   + KG+ K PG S++
Sbjct: 585 LSSVYAAKGKWEEVARLRKDMRDKGLRKEPGCSWI 619



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 122/265 (46%), Gaps = 38/265 (14%)

Query: 266 DLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIIS 325
           +  + K LH+ ++      E  L N++I+ Y+K G +  +  VF+Q+   +L SW  I+S
Sbjct: 24  NFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHPNLYSWNTILS 83

Query: 326 GYVQNGCARE--------------ALNQFIK------------------MRQEKTDSVDS 353
            Y + G   E              + N  I                   ++ + + +++ 
Sbjct: 84  AYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDGSFNLNR 143

Query: 354 ITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEE 413
           IT  ++L  + +   +++  Q+HG   + GF  Y  V + L+  YSK G +  A  VF+E
Sbjct: 144 ITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDE 203

Query: 414 MGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTND 473
           +   ++VV +NT+I G    G  E +  L+ +M E     DS ++ S++      GL  D
Sbjct: 204 LP-EKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRER----DSISWTSMITGFTQNGLDRD 258

Query: 474 GLVIFNQMIEENKVKPSQEHYGCVV 498
            + IF +M  EN ++  Q  +G V+
Sbjct: 259 AIDIFREMKLEN-LQMDQYTFGSVL 282


>gi|296084817|emb|CBI27699.3| unnamed protein product [Vitis vinifera]
          Length = 807

 Score =  241 bits (615), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 172/590 (29%), Positives = 287/590 (48%), Gaps = 67/590 (11%)

Query: 11  LLSNYFKSGKI-KEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLP 69
           L+S Y K G +  +A   F+ I  K+VVSW+ VI G+S N F E++ K F  M+   + P
Sbjct: 121 LISMYAKCGLVCSDAYAAFNRIEFKDVVSWNAVIAGFSENKFTEEAFKLFHAMLKGPIQP 180

Query: 70  NSFTMVGVLVAAAGLQN---LELARSIH-GLMVKFGLESD-------------------- 105
           N  T+  +L   A L+        + +H  ++ +  L  D                    
Sbjct: 181 NYATIASILPVCASLEENAGYRYGKEVHCHVLRRMELVEDVSVINSLMSFYLRIGQMEKA 240

Query: 106 --LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFN-FFRGSGLVPNAVTMLTVIRGCVA 162
             LF  +K+  LVS NAI+AG+ +N  + +A+ LF+ F     + P++VT+++V+  C  
Sbjct: 241 EFLFRNMKSRDLVSWNAIIAGYASNGEWLKALELFSEFISLETIKPDSVTLVSVLPACAH 300

Query: 163 LGSRALCELIHGLTIK-LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
           + +  + + IHG  I+  GL  D SV N++L  Y+      AA+Q F  +  KD+ISW  
Sbjct: 301 VHNLQVAKGIHGYIIRHPGLREDTSVGNALLSFYAKCNYTQAALQTFLMISRKDLISWNA 360

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA-QVVLG 280
           ++  F +       + +   M +  I  D++ +L +I   A +  +K+ K+ H+  +  G
Sbjct: 361 ILDAFTESGCETHLVNLLHWMLREGIRPDSITILTIIQYYAAVSRVKKVKETHSYSIRFG 420

Query: 281 GLQSEL--RLSNSIIAMYSKCGDL--------------------------------DSSR 306
            LQ +    L N ++  Y+KCG++                                D + 
Sbjct: 421 LLQGDAGPTLGNGMLDAYAKCGNMKYAVNIFGSLSEKRNVVTCNSMISGYVNSSSHDDAY 480

Query: 307 SVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGEL 366
           ++FN ++E  L +W  ++  Y +N    +AL+ F +++ +     D +T++SIL A   +
Sbjct: 481 AIFNTMSETDLTTWNLMVRVYAENDFPDQALSLFHELQGQGMKP-DIVTIMSILPACAHM 539

Query: 367 AALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTI 426
           A++ +  Q HG    A F   R +    I  YSKCG+V  AY +F      +D+V +  +
Sbjct: 540 ASVHMLRQCHGYVIRACFNDVR-LNGAFIDMYSKCGSVFGAYKLFLSSP-QKDLVMFTAM 597

Query: 427 IYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENK 486
           + G+ ++G GE AL ++  M E G  PD     ++L AC HAGL ++G  IFN + + + 
Sbjct: 598 VGGFAMHGMGEEALRIFSYMLELGVKPDHVIITAVLFACSHAGLVDEGWKIFNSIEKVHG 657

Query: 487 VKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
            +P+ E Y CVVDLLAR G + DA     ++      NIW  LL  C  H
Sbjct: 658 FQPTMEQYACVVDLLARGGRIKDAYTFVTRMPIEANANIWGTLLGACRTH 707



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 139/523 (26%), Positives = 251/523 (47%), Gaps = 69/523 (13%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKS-MKAFSHM-MLSGLL 68
           LL+ Y KSG +     LF E+ +++ V W+IV+ G +    HE   M+ F  M M++   
Sbjct: 19  LLNLYAKSGALDYCNKLFGEMDQRDPVIWNIVLSGLAGFQSHEAEVMRLFRAMHMVNEAK 78

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG------------------- 109
           PNS T+  VL   A L+  +  +S+H  ++K GLES    G                   
Sbjct: 79  PNSVTIAIVLPVCARLRE-DAGKSVHSYVIKSGLESHTLAGNALISMYAKCGLVCSDAYA 137

Query: 110 ----LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL-- 163
               ++   +VS NA++AGF  NK  ++A  LF+      + PN  T+ +++  C +L  
Sbjct: 138 AFNRIEFKDVVSWNAVIAGFSENKFTEEAFKLFHAMLKGPIQPNYATIASILPVCASLEE 197

Query: 164 --GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
             G R   E+   +  ++ L+ DVSV NS++  Y  +  ++ A  +FR M+ +D++SW  
Sbjct: 198 NAGYRYGKEVHCHVLRRMELVEDVSVINSLMSFYLRIGQMEKAEFLFRNMKSRDLVSWNA 257

Query: 222 MMGLFVDFEYAGDALKIFRE-MRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL- 279
           ++  +        AL++F E +    I  D+V L++++   A + +L+  K +H  ++  
Sbjct: 258 IIAGYASNGEWLKALELFSEFISLETIKPDSVTLVSVLPACAHVHNLQVAKGIHGYIIRH 317

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            GL+ +  + N++++ Y+KC    ++   F  I+ K L+SW AI+  + ++GC    +N 
Sbjct: 318 PGLREDTSVGNALLSFYAKCNYTQAALQTFLMISRKDLISWNAILDAFTESGCETHLVNL 377

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPR---YRSVQNCLIS 396
              M +E     DSIT+++I+     ++ ++   + H  +   G  +     ++ N ++ 
Sbjct: 378 LHWMLREGIRP-DSITILTIIQYYAAVSRVKKVKETHSYSIRFGLLQGDAGPTLGNGMLD 436

Query: 397 SYSKCGNV--------------------------------DLAYIVFEEMGFLRDVVSWN 424
           +Y+KCGN+                                D AY +F  M    D+ +WN
Sbjct: 437 AYAKCGNMKYAVNIFGSLSEKRNVVTCNSMISGYVNSSSHDDAYAIFNTMS-ETDLTTWN 495

Query: 425 TIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
            ++  Y  N   + AL+L+H++   G  PD  T +SIL AC H
Sbjct: 496 LMVRVYAENDFPDQALSLFHELQGQGMKPDIVTIMSILPACAH 538



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 114/479 (23%), Positives = 219/479 (45%), Gaps = 62/479 (12%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM-LSGL 67
           + L+S Y + G++++AE LF  +  +++VSW+ +I GY+ NG   K+++ FS  + L  +
Sbjct: 225 NSLMSFYLRIGQMEKAEFLFRNMKSRDLVSWNAIIAGYASNGEWLKALELFSEFISLETI 284

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKF-GLESD--------------------- 105
            P+S T+V VL A A + NL++A+ IHG +++  GL  D                     
Sbjct: 285 KPDSVTLVSVLPACAHVHNLQVAKGIHGYIIRHPGLREDTSVGNALLSFYAKCNYTQAAL 344

Query: 106 -LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
             F  +    L+S NAI+  F  +      V L ++    G+ P+++T+LT+I+   A+ 
Sbjct: 345 QTFLMISRKDLISWNAILDAFTESGCETHLVNLLHWMLREGIRPDSITILTIIQYYAAVS 404

Query: 165 SRALCELIHGLTIKLGLI---LDVSVNNSVLDMYSCLMDL-------------------- 201
                +  H  +I+ GL+      ++ N +LD Y+   ++                    
Sbjct: 405 RVKKVKETHSYSIRFGLLQGDAGPTLGNGMLDAYAKCGNMKYAVNIFGSLSEKRNVVTCN 464

Query: 202 ------------DAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIIC 249
                       D A  IF  M   D+ +W  M+ ++ + ++   AL +F E++   +  
Sbjct: 465 SMISGYVNSSSHDDAYAIFNTMSETDLTTWNLMVRVYAENDFPDQALSLFHELQGQGMKP 524

Query: 250 DTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVF 309
           D V +++++   A +  +   +Q H  V+     +++RL+ + I MYSKCG +  +  +F
Sbjct: 525 DIVTIMSILPACAHMASVHMLRQCHGYVIRACF-NDVRLNGAFIDMYSKCGSVFGAYKLF 583

Query: 310 NQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAAL 369
               +K LV +TA++ G+  +G   EAL  F  M +      D + + ++L A      +
Sbjct: 584 LSSPQKDLVMFTAMVGGFAMHGMGEEALRIFSYMLELGVKP-DHVIITAVLFACSHAGLV 642

Query: 370 EICLQL-HGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
           +   ++ + I    GF        C++   ++ G +  AY     M    +   W T++
Sbjct: 643 DEGWKIFNSIEKVHGFQPTMEQYACVVDLLARGGRIKDAYTFVTRMPIEANANIWGTLL 701



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 89/290 (30%), Positives = 148/290 (51%), Gaps = 11/290 (3%)

Query: 186 SVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFE-YAGDALKIFREMRK 244
           S+   +L++Y+    LD   ++F EM+ +D + W  ++     F+ +  + +++FR M  
Sbjct: 14  SLCKGLLNLYAKSGALDYCNKLFGEMDQRDPVIWNIVLSGLAGFQSHEAEVMRLFRAMHM 73

Query: 245 -SRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLD 303
            +    ++V +  ++ V A L +   GK +H+ V+  GL+S     N++I+MY+KCG + 
Sbjct: 74  VNEAKPNSVTIAIVLPVCARLRE-DAGKSVHSYVIKSGLESHTLAGNALISMYAKCGLVC 132

Query: 304 S-SRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTA 362
           S + + FN+I  K +VSW A+I+G+ +N    EA   F  M +      +  T+ SIL  
Sbjct: 133 SDAYAAFNRIEFKDVVSWNAVIAGFSENKFTEEAFKLFHAMLKGPIQP-NYATIASILPV 191

Query: 363 SGEL---AALEICLQLH-GIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLR 418
              L   A      ++H  +          SV N L+S Y + G ++ A  +F  M   R
Sbjct: 192 CASLEENAGYRYGKEVHCHVLRRMELVEDVSVINSLMSFYLRIGQMEKAEFLFRNMK-SR 250

Query: 419 DVVSWNTIIYGYGVNGHGETALALYHKMTETGEV-PDSSTYLSILNACGH 467
           D+VSWN II GY  NG    AL L+ +      + PDS T +S+L AC H
Sbjct: 251 DLVSWNAIIAGYASNGEWLKALELFSEFISLETIKPDSVTLVSVLPACAH 300



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/267 (20%), Positives = 115/267 (43%), Gaps = 37/267 (13%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + ++S Y  S    +A  +F+ + E ++ +W++++  Y+ N F ++++  F  +   G+ 
Sbjct: 464 NSMISGYVNSSSHDDAYAIFNTMSETDLTTWNLMVRVYAENDFPDQALSLFHELQGQGMK 523

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVK----------------------FGLESDL 106
           P+  T++ +L A A + ++ + R  HG +++                      FG    L
Sbjct: 524 PDIVTIMSILPACAHMASVHMLRQCHGYVIRACFNDVRLNGAFIDMYSKCGSVFG-AYKL 582

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           F       LV   A+V GF  + + ++A+ +F++    G+ P+ V +  V+  C   G  
Sbjct: 583 FLSSPQKDLVMFTAMVGGFAMHGMGEEALRIFSYMLELGVKPDHVIITAVLFACSHAGL- 641

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
               +  G  I    I  V      ++ Y+C++DL A     R    KD  ++   M + 
Sbjct: 642 ----VDEGWKI-FNSIEKVHGFQPTMEQYACVVDLLA-----RGGRIKDAYTFVTRMPIE 691

Query: 227 VDFEYAGD---ALKIFREMRKSRIICD 250
            +    G    A +   E+   R++ D
Sbjct: 692 ANANIWGTLLGACRTHHEVELGRVVAD 718


>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2261; Flags: Precursor
 gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  241 bits (615), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 170/563 (30%), Positives = 280/563 (49%), Gaps = 38/563 (6%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIP---EKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           YNS  L+S Y KSG   +AE++F+ +    +++VVSWS ++  Y  NG    ++K F   
Sbjct: 100 YNS--LISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEF 157

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG-LESDLFEG------------ 109
           +  GL+PN +    V+ A +    + + R   G ++K G  ESD+  G            
Sbjct: 158 LELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGEN 217

Query: 110 -LKNPYLV-----SCNAIVAGFINNKLFQ-----QAVLLFNFFRGSGLVPNAVTMLTVIR 158
             +N Y V       N +    +  +  Q     +A+  F     SG   +  T+ +V  
Sbjct: 218 SFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFS 277

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYS-CLMD--LDAAIQIFREMECKD 215
            C  L + +L + +H   I+ GL+ DV    S++DMY+ C  D  +D   ++F  ME   
Sbjct: 278 ACAELENLSLGKQLHSWAIRSGLVDDVEC--SLVDMYAKCSADGSVDDCRKVFDRMEDHS 335

Query: 216 VISWTRMM-GLFVDFEYAGDALKIFREM-RKSRIICDTVALLNLISVNAILGDLKRGKQL 273
           V+SWT ++ G   +   A +A+ +F EM  +  +  +     +       L D + GKQ+
Sbjct: 336 VMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQV 395

Query: 274 HAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA 333
             Q    GL S   ++NS+I+M+ K   ++ ++  F  ++EK+LVS+   + G  +N   
Sbjct: 396 LGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNF 455

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC 393
            +A  + +    E+   V + T  S+L+    + ++    Q+H    + G    + V N 
Sbjct: 456 EQAF-KLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNA 514

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           LIS YSKCG++D A  VF  M   R+V+SW ++I G+  +G     L  +++M E G  P
Sbjct: 515 LISMYSKCGSIDTASRVFNFMEN-RNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKP 573

Query: 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL 513
           +  TY++IL+AC H GL ++G   FN M E++K+KP  EHY C+VDLL RAG L+DA   
Sbjct: 574 NEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEF 633

Query: 514 AGKLLEGMGPNIWRALLSGCVLH 536
              +       +WR  L  C +H
Sbjct: 634 INTMPFQADVLVWRTFLGACRVH 656



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 128/498 (25%), Positives = 241/498 (48%), Gaps = 36/498 (7%)

Query: 21  IKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVA 80
            + A  +FD++ E NVV+W+++I      GF  ++++ F  M+LSG   + FT+  V  A
Sbjct: 219 FENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSA 278

Query: 81  AAGLQNLELARSIHGLMVKFGLESDL-----------------------FEGLKNPYLVS 117
            A L+NL L + +H   ++ GL  D+                       F+ +++  ++S
Sbjct: 279 CAELENLSLGKQLHSWAIRSGLVDDVECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMS 338

Query: 118 CNAIVAGFINN-KLFQQAVLLFNFFRGSGLV-PNAVTMLTVIRGCVALGSRALCELIHGL 175
             A++ G++ N  L  +A+ LF+     G V PN  T  +  + C  L    + + + G 
Sbjct: 339 WTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQ 398

Query: 176 TIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG---LFVDFEYA 232
             K GL  + SV NSV+ M+     ++ A + F  +  K+++S+   +      ++FE  
Sbjct: 399 AFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFE-- 456

Query: 233 GDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSI 292
             A K+  E+ +  +        +L+S  A +G +++G+Q+H+QVV  GL     + N++
Sbjct: 457 -QAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNAL 515

Query: 293 IAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVD 352
           I+MYSKCG +D++  VFN +  ++++SWT++I+G+ ++G A   L  F +M +E     +
Sbjct: 516 ISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKP-N 574

Query: 353 SITLVSILTASGELAALEICLQLHGIAFEAGF--PRYRSVQNCLISSYSKCGNVDLAYIV 410
            +T V+IL+A   +  +    +     +E     P+      C++    + G +  A+  
Sbjct: 575 EVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYA-CMVDLLCRAGLLTDAFEF 633

Query: 411 FEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGL 470
              M F  DV+ W T +    V+ + E       K+ E  +  + + Y+ + N    AG 
Sbjct: 634 INTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILEL-DPNEPAAYIQLSNIYACAGK 692

Query: 471 TNDGLVIFNQMIEENKVK 488
             +   +  +M E N VK
Sbjct: 693 WEESTEMRRKMKERNLVK 710



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 98/345 (28%), Positives = 173/345 (50%), Gaps = 15/345 (4%)

Query: 134 AVLLFNFFRGSGLVP-NAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVL 192
           AV   +     G+ P ++VT  ++++ C+      L +L+H   I+  +  D  + NS++
Sbjct: 45  AVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLI 104

Query: 193 DMYSCLMDLDAAIQIFREME---CKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIIC 249
            +YS   D   A  +F  M     +DV+SW+ MM  + +     DA+K+F E  +  ++ 
Sbjct: 105 SLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVP 164

Query: 250 DTVALLNLISVNAILGDLKRGK-QLHAQVVLGGLQSELRLSNSIIAMYSKCGD-LDSSRS 307
           +      +I   +    +  G+  L   +  G  +S++ +  S+I M+ K  +  +++  
Sbjct: 165 NDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYK 224

Query: 308 VFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELA 367
           VF++++E ++V+WT +I+  +Q G  REA+  F+ M     +S D  TL S+ +A  EL 
Sbjct: 225 VFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFES-DKFTLSSVFSACAELE 283

Query: 368 ALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC---GNVDLAYIVFEEMGFLRDVVSWN 424
            L +  QLH  A  +G      V+  L+  Y+KC   G+VD    VF+ M     V+SW 
Sbjct: 284 NLSLGKQLHSWAIRSGL--VDDVECSLVDMYAKCSADGSVDDCRKVFDRME-DHSVMSWT 340

Query: 425 TIIYGYGVNGHGET-ALALYHKMTETGEV-PDSSTYLSILNACGH 467
            +I GY  N +  T A+ L+ +M   G V P+  T+ S   ACG+
Sbjct: 341 ALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGN 385


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  241 bits (615), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 162/532 (30%), Positives = 274/532 (51%), Gaps = 33/532 (6%)

Query: 35   NVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIH 94
            +V++W+  +  +   G   +++  F  M+ S +  +  T V +L   AGL  LEL + IH
Sbjct: 870  DVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIH 929

Query: 95   GLMVKFGLES----------------------DLFEGLKNPYLVSCNAIVAGFINNKLFQ 132
            G++V+ GL+                        +F  +    LVS N +++G   + L +
Sbjct: 930  GIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEE 989

Query: 133  QAVLLF-NFFRGSGLVPNAVTMLTVIRGCVALGSRA-LCELIHGLTIKLGLILDVSVNNS 190
             +V +F +  RG GL+P+  T+ +V+R C +LG    L   IH   +K G++LD  V+ +
Sbjct: 990  CSVGMFVDLLRG-GLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVSTT 1048

Query: 191  VLDMYSCLMDLDAAIQIFREMECKDVISWTRMM-GLFVDFEYAGDALKIFREMRKSRIIC 249
            ++D+YS    ++ A  +F   +  D+ SW  MM G  V  ++   AL+++  M++S    
Sbjct: 1049 LIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFP-KALRLYILMQESGERA 1107

Query: 250  DTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVF 309
            + + L N       L  LK+GKQ+ A VV  G   +L + + ++ MY KCG+++S+R +F
Sbjct: 1108 NQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIF 1167

Query: 310  NQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAAL 369
            N+I     V+WT +ISG V+NG    AL  +  MR  K    D  T  +++ A   L AL
Sbjct: 1168 NEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQP-DEYTFATLVKACSLLTAL 1226

Query: 370  EICLQLHG--IAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
            E   Q+H   +     F  +  V   L+  Y+KCGN++ A  +F+     R + SWN +I
Sbjct: 1227 EQGRQIHANTVKLNCAFDPF--VMTSLVDMYAKCGNIEDARGLFKRTNTSR-IASWNAMI 1283

Query: 428  YGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKV 487
             G   +G+ E AL  + +M   G  PD  T++ +L+AC H+GL ++    F  M +   +
Sbjct: 1284 VGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYGI 1343

Query: 488  KPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGR 539
            +P  EHY C+VD L+RAG + +A  +   +      +++R LL+ C + V R
Sbjct: 1344 EPEIEHYSCLVDALSRAGRIREAEKVISSMPFEASASMYRTLLNACRVQVDR 1395



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 139/506 (27%), Positives = 238/506 (47%), Gaps = 34/506 (6%)

Query: 11   LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
            L++ Y K+G +  A  +F ++ E ++VSW+ +I G +++G  E S+  F  ++  GLLP+
Sbjct: 947  LINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRGGLLPD 1006

Query: 71   SFTMVGVLVAAAGLQN-LELARSIHGLMVKFGLESDLF--EGLKNPY------------- 114
             FT+  VL A + L     LA  IH   +K G+  D F    L + Y             
Sbjct: 1007 QFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVSTTLIDVYSKSGKMEEAEFLF 1066

Query: 115  -------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRA 167
                   L S NA++ G+I +  F +A+ L+   + SG   N +T+    +    L    
Sbjct: 1067 VNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQITLANAAKAAGGLVGLK 1126

Query: 168  LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
              + I  + +K G  LD+ V + VLDMY    ++++A +IF E+   D ++WT M+   V
Sbjct: 1127 QGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISGCV 1186

Query: 228  DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
            +      AL  +  MR S++  D      L+   ++L  L++G+Q+HA  V      +  
Sbjct: 1187 ENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANTVKLNCAFDPF 1246

Query: 288  LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
            +  S++ MY+KCG+++ +R +F +     + SW A+I G  Q+G A EAL QF +  + +
Sbjct: 1247 VMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIVGLAQHGNAEEAL-QFFEEMKSR 1305

Query: 348  TDSVDSITLVSILTA---SGELA-ALEICLQLHGI-AFEAGFPRYRSVQNCLISSYSKCG 402
              + D +T + +L+A   SG ++ A E    +  I   E     Y    +CL+ + S+ G
Sbjct: 1306 GVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYGIEPEIEHY----SCLVDALSRAG 1361

Query: 403  NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
             +  A  V   M F      + T++    V    ET   +  K+    E  DS+ Y+ + 
Sbjct: 1362 RIREAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLAL-EPSDSAAYVLLS 1420

Query: 463  NACGHAGLTNDGLVIFNQMIEENKVK 488
            N    A    +     N M + N  K
Sbjct: 1421 NVYAAANQWENVASARNMMRKANVKK 1446



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 149/554 (26%), Positives = 255/554 (46%), Gaps = 46/554 (8%)

Query: 4    DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
            D + +  L++ Y K G+I+EA  LFD +  ++VV W++++  Y   G   +++  FS   
Sbjct: 761  DVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSEFN 820

Query: 64   LSGLLPNSFTMVGVLVAAAGLQN-LELA-RSIHGLMVKFGLESDLFEGLKNPYLVSCNAI 121
             +GL P+  T+  +       QN LE   + +     K  +  D  +G     +++ N  
Sbjct: 821  RTGLRPDDVTLCTLARVVKSKQNVLEWQLKQLKAYGTKLFMYDDDDDGSD---VIAWNKT 877

Query: 122  VAGFINNKLFQQAVLLFNFFRGSGLVPNAVT---MLTVIRG--CVALGSRALCELIHGLT 176
            ++ F+      +AV  F     S +  + +T   ML+V+ G  C+ LG +     IHG+ 
Sbjct: 878  LSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQ-----IHGIV 932

Query: 177  IKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM------------- 223
            ++ GL   VSV N +++MY     +  A  +F +M   D++SW  M+             
Sbjct: 933  VRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECSV 992

Query: 224  GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
            G+FVD    G     F           TVA + L + +++ G      Q+HA  +  G+ 
Sbjct: 993  GMFVDLLRGGLLPDQF-----------TVASV-LRACSSLGGGCHLATQIHACAMKAGVV 1040

Query: 284  SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
             +  +S ++I +YSK G ++ +  +F       L SW A++ GY+ +G   +AL  +I M
Sbjct: 1041 LDSFVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILM 1100

Query: 344  RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
             QE  +  + ITL +   A+G L  L+   Q+  +  + GF     V + ++  Y KCG 
Sbjct: 1101 -QESGERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGE 1159

Query: 404  VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
            ++ A  +F E+    D V+W T+I G   NG  E AL  YH M  +   PD  T+ +++ 
Sbjct: 1160 MESARRIFNEIPSPDD-VAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVK 1218

Query: 464  ACGHAGLTNDGLVIFNQMIEEN-KVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMG 522
            AC        G  I    ++ N    P       +VD+ A+ G + DA GL  +      
Sbjct: 1219 ACSLLTALEQGRQIHANTVKLNCAFDPFV--MTSLVDMYAKCGNIEDARGLFKRTNTSRI 1276

Query: 523  PNIWRALLSGCVLH 536
             + W A++ G   H
Sbjct: 1277 AS-WNAMIVGLAQH 1289



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 111/413 (26%), Positives = 187/413 (45%), Gaps = 38/413 (9%)

Query: 57   KAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLV 116
            +A + ++ SG  P+ F    ++   +   +L  AR +      F    D    L     V
Sbjct: 647  RAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKL------FDTTPDTSRDL-----V 695

Query: 117  SCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLT 176
            + NAI++   +    +    LF   R S +     T+  V + C+   S +  E +HG  
Sbjct: 696  TWNAILSAHADKA--RDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAESLHGYA 753

Query: 177  IKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDAL 236
            +K+GL  DV V  +++++Y+    +  A  +F  M  +DV+ W  MM  +VD     +AL
Sbjct: 754  VKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEAL 813

Query: 237  KIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMY 296
             +F E  ++ +  D V L  L  V               Q VL     +L+   + + MY
Sbjct: 814  LLFSEFNRTGLRPDDVTLCTLARVVK-----------SKQNVLEWQLKQLKAYGTKLFMY 862

Query: 297  SKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITL 356
                                +++W   +S ++Q G   EA++ F+ M   +  + D +T 
Sbjct: 863  DD------------DDDGSDVIAWNKTLSWFLQRGETWEAVDCFVDMINSRV-ACDGLTF 909

Query: 357  VSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGF 416
            V +L+    L  LE+  Q+HGI   +G  +  SV NCLI+ Y K G+V  A  VF +M  
Sbjct: 910  VVMLSVVAGLNCLELGKQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNE 969

Query: 417  LRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAG 469
            + D+VSWNT+I G  ++G  E ++ ++  +   G +PD  T  S+L AC   G
Sbjct: 970  V-DLVSWNTMISGCALSGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLG 1021



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 154/333 (46%), Gaps = 23/333 (6%)

Query: 3    IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
            +D + S+ L+  Y KSGK++EAE LF      ++ SW+ ++HGY ++G   K+++ +  M
Sbjct: 1041 LDSFVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILM 1100

Query: 63   MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------- 106
              SG   N  T+     AA GL  L+  + I  ++VK G   DL                
Sbjct: 1101 QESGERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEM 1160

Query: 107  ------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                  F  + +P  V+   +++G + N   + A+  ++  R S + P+  T  T+++ C
Sbjct: 1161 ESARRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKAC 1220

Query: 161  VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
              L +      IH  T+KL    D  V  S++DMY+   +++ A  +F+      + SW 
Sbjct: 1221 SLLTALEQGRQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWN 1280

Query: 221  RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG-KQLHAQVVL 279
             M+        A +AL+ F EM+   +  D V  + ++S  +  G +    +  ++   +
Sbjct: 1281 AMIVGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKI 1340

Query: 280  GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQI 312
             G++ E+   + ++   S+ G +  +  V + +
Sbjct: 1341 YGIEPEIEHYSCLVDALSRAGRIREAEKVISSM 1373



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 66/194 (34%), Positives = 99/194 (51%), Gaps = 6/194 (3%)

Query: 266 DLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQI--TEKSLVSWTAI 323
           DL  GK+ HA+++  G   +  L+N++I MYSKCG L S+R +F+    T + LV+W AI
Sbjct: 641 DLPLGKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDTSRDLVTWNAI 700

Query: 324 ISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG 383
           +S +     AR+  + F  +R+    S    TL  +       A+      LHG A + G
Sbjct: 701 LSAHADK--ARDGFHLFRLLRRSFV-SATRHTLAPVFKMCLLSASPSAAESLHGYAVKIG 757

Query: 384 FPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALY 443
                 V   L++ Y+K G +  A ++F+ MG LRDVV WN ++  Y   G    AL L+
Sbjct: 758 LQWDVFVAGALVNIYAKFGRIREARVLFDGMG-LRDVVLWNVMMKAYVDTGLEYEALLLF 816

Query: 444 HKMTETGEVPDSST 457
            +   TG  PD  T
Sbjct: 817 SEFNRTGLRPDDVT 830


>gi|225450995|ref|XP_002284834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240 [Vitis vinifera]
          Length = 565

 Score =  241 bits (615), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 133/439 (30%), Positives = 237/439 (53%), Gaps = 10/439 (2%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F  +  P L   N+++ G+  ++   +A+ ++   R  G  P+  T   V++ C  +  
Sbjct: 61  VFNQIDRPSLYIWNSMIKGYSISESPDEALTMYREMRQKGYAPDHFTFPFVLKACSLVNG 120

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
             L + +H   +K G  +DV    ++L MY+   D++AA+++F ++   +V++WT ++  
Sbjct: 121 YNLGQCVHNCIVKTGFEVDVYAATALLQMYAACGDMEAALKVFDDIPKWNVVAWTSLIAG 180

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH---AQVVLGGL 282
            +  +   +A++++++M    +  + + ++N++   A   DL  G+ +H    Q+ L   
Sbjct: 181 CISNDCPSEAVRVYKDMELWSVAPNEITMVNVLVACARSRDLNAGRWVHDRTGQMGLDPF 240

Query: 283 QSE----LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
           QS     + L+ +I+ MY+KCG L ++R +FN++  ++LV+W ++I  Y Q G A EAL+
Sbjct: 241 QSNSNFNVILATAIVDMYAKCGSLKTARDLFNKMPHRNLVAWNSMIGAYNQYGQANEALD 300

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
            F  MR    D  D  T + ++ A   L AL     LH    +       ++   L+  Y
Sbjct: 301 LFSDMRIAGFDP-DKATFLCVIGACAHLGALVSGQALHAYVSKTNLTDDTAIGTALVDMY 359

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTE-TGEVPDSST 457
           +K G+ + A  VF E+   +DV +W ++I G  ++GHGE AL  + KM E T  +PD  T
Sbjct: 360 AKSGDAERAQQVFSELQ-KKDVTAWTSLIIGLAMHGHGEEALTFFKKMQEDTALIPDEIT 418

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL 517
           Y+ +L+AC H G   DG   F  M   + ++P+ +HYGC+VDLL+RAG L +A  L  K+
Sbjct: 419 YIGVLSACSHVGKVEDGKNHFISMKNVHGIEPTTQHYGCMVDLLSRAGRLGEAERLVEKM 478

Query: 518 LEGMGPNIWRALLSGCVLH 536
                  IW ALL+GC ++
Sbjct: 479 PVEPNTAIWSALLNGCKIY 497



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 129/525 (24%), Positives = 251/525 (47%), Gaps = 46/525 (8%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTM 74
           Y  SG +  A+++F++I   ++  W+ +I GYSI+   ++++  +  M   G  P+ FT 
Sbjct: 49  YSDSGNLNYAKSVFNQIDRPSLYIWNSMIKGYSISESPDEALTMYREMRQKGYAPDHFTF 108

Query: 75  VGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------------FEGLKN 112
             VL A + +    L + +H  +VK G E D+                      F+ +  
Sbjct: 109 PFVLKACSLVNGYNLGQCVHNCIVKTGFEVDVYAATALLQMYAACGDMEAALKVFDDIPK 168

Query: 113 PYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELI 172
             +V+  +++AG I+N    +AV ++       + PN +TM+ V+  C           +
Sbjct: 169 WNVVAWTSLIAGCISNDCPSEAVRVYKDMELWSVAPNEITMVNVLVACARSRDLNAGRWV 228

Query: 173 HGLTIKLGLI-------LDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
           H  T ++GL         +V +  +++DMY+    L  A  +F +M  +++++W  M+G 
Sbjct: 229 HDRTGQMGLDPFQSNSNFNVILATAIVDMYAKCGSLKTARDLFNKMPHRNLVAWNSMIGA 288

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +  +  A +AL +F +MR +    D    L +I   A LG L  G+ LHA V    L  +
Sbjct: 289 YNQYGQANEALDLFSDMRIAGFDPDKATFLCVIGACAHLGALVSGQALHAYVSKTNLTDD 348

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
             +  +++ MY+K GD + ++ VF+++ +K + +WT++I G   +G   EAL  F KM++
Sbjct: 349 TAIGTALVDMYAKSGDAERAQQVFSELQKKDVTAWTSLIIGLAMHGHGEEALTFFKKMQE 408

Query: 346 EKTDSVDSITLVSILTASGELAALE------ICLQ-LHGIAFEAGFPRYRSVQNCLISSY 398
           +     D IT + +L+A   +  +E      I ++ +HGI  E     Y     C++   
Sbjct: 409 DTALIPDEITYIGVLSACSHVGKVEDGKNHFISMKNVHGI--EPTTQHY----GCMVDLL 462

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
           S+ G +  A  + E+M    +   W+ ++ G  +  + + A  +  ++ E  EV  S  Y
Sbjct: 463 SRAGRLGEAERLVEKMPVEPNTAIWSALLNGCKIYQNIDVADRVRRRVREL-EVDGSGVY 521

Query: 459 LSILNACGHAGLTN-DGLVIFNQMIEENKVKPSQEHYGCVVDLLA 502
           + + N   +AG    + + +  ++++E K++ S  H    + +LA
Sbjct: 522 VLLSNI--YAGACRWEEVKMARELMKERKIQKSLGHSSVEMKMLA 564



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 91/356 (25%), Positives = 173/356 (48%), Gaps = 32/356 (8%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D Y ++ LL  Y   G ++ A  +FD+IP+ NVV+W+ +I G   N    ++++ +  M
Sbjct: 138 VDVYAATALLQMYAACGDMEAALKVFDDIPKWNVVAWTSLIAGCISNDCPSEAVRVYKDM 197

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES------------------ 104
            L  + PN  TMV VLVA A  ++L   R +H    + GL+                   
Sbjct: 198 ELWSVAPNEITMVNVLVACARSRDLNAGRWVHDRTGQMGLDPFQSNSNFNVILATAIVDM 257

Query: 105 -----------DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTM 153
                      DLF  + +  LV+ N+++  +       +A+ LF+  R +G  P+  T 
Sbjct: 258 YAKCGSLKTARDLFNKMPHRNLVAWNSMIGAYNQYGQANEALDLFSDMRIAGFDPDKATF 317

Query: 154 LTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC 213
           L VI  C  LG+    + +H    K  L  D ++  +++DMY+   D + A Q+F E++ 
Sbjct: 318 LCVIGACAHLGALVSGQALHAYVSKTNLTDDTAIGTALVDMYAKSGDAERAQQVFSELQK 377

Query: 214 KDVISWTRMMGLFVDFEYAGDALKIFREMRK-SRIICDTVALLNLISVNAILGDLKRGK- 271
           KDV +WT ++       +  +AL  F++M++ + +I D +  + ++S  + +G ++ GK 
Sbjct: 378 KDVTAWTSLIIGLAMHGHGEEALTFFKKMQEDTALIPDEITYIGVLSACSHVGKVEDGKN 437

Query: 272 QLHAQVVLGGLQSELRLSNSIIAMYSKCGDL-DSSRSVFNQITEKSLVSWTAIISG 326
              +   + G++   +    ++ + S+ G L ++ R V     E +   W+A+++G
Sbjct: 438 HFISMKNVHGIEPTTQHYGCMVDLLSRAGRLGEAERLVEKMPVEPNTAIWSALLNG 493


>gi|302793382|ref|XP_002978456.1| hypothetical protein SELMODRAFT_108616 [Selaginella moellendorffii]
 gi|300153805|gb|EFJ20442.1| hypothetical protein SELMODRAFT_108616 [Selaginella moellendorffii]
          Length = 899

 Score =  241 bits (615), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 159/549 (28%), Positives = 272/549 (49%), Gaps = 36/549 (6%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSG-LLPNSFT 73
           Y K G++ EA+ +F+ +PE+N+VSW+ +I   + NG  + +M+ F  M L G + PN  T
Sbjct: 171 YGKCGRVHEAKAVFERLPERNLVSWNALIAANAQNGHCKDAMQVFHLMDLDGSVRPNDAT 230

Query: 74  MVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPY----------------- 114
            V V+ A + L +L   +S H  +++ G +S LF G  L N Y                 
Sbjct: 231 FVSVVDACSNLLDLPRGKSTHERIIRTGFDSYLFVGNSLVNMYGKCGSVDRARLVFEKMS 290

Query: 115 ---LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCEL 171
              +VS   ++  +      + A   F+ ++     PNAVT + V+  C+        E 
Sbjct: 291 SRNVVSWTVMIWAYAQQGFIRAA---FDLYKRMDCEPNAVTFMAVMDSCLRPEDLPRAEQ 347

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK--DVISWTRMMGLFVDF 229
           IH   +  G   D  +   ++ MY     +D+A  IF  ++ +  + ++W  M+      
Sbjct: 348 IHAHMVASGFDSDAVLQVCLVTMYGKCGSVDSAWSIFENLKERSNNAVTWNAMISGLAQH 407

Query: 230 EYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLS 289
             +  AL+ F +M    +  ++V  L  +   + L DL RG+QLHA+++L  +  E  LS
Sbjct: 408 GESKQALECFWKMELEGVRPNSVTYLASLEACSSLNDLTRGRQLHARILLENIH-EANLS 466

Query: 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD 349
           N++I MY KCG LD +   F ++ E+ +VSW  +I+ Y Q+G  R+AL  F +M  E   
Sbjct: 467 NAVINMYGKCGSLDEAMDEFAKMPERDVVSWNTMIATYAQHGSGRQALEFFKQMDLEGW- 525

Query: 350 SVDSITLVSILTASGELAALEICLQLHGIAFEAG--FPRYRSVQNCLISSYSKCGNVDLA 407
           + D  T +  + A G + +L +   +H I   A     +   V   L++ Y++CG++  A
Sbjct: 526 TTDRATYLGAIDACGSVPSLALGKTIHSIVATAAPCLEQDPGVATALVTMYARCGSLHDA 585

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
             VF      R++V+W+ +I     +G    AL L+ +M   G  PD+ T+ +++ AC  
Sbjct: 586 KSVFWR-SHSRNLVTWSNLIAACAQHGRENEALDLFREMQLQGTKPDALTFSTLVAACSR 644

Query: 468 AGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWR 527
            G+  DG+  F  M+E+  +  S++H+G +VDLL RAG L +A  +  K    +   +  
Sbjct: 645 RGVVKDGVFYFVSMVEDYSIPASEDHFGGMVDLLGRAGWLEEAEQVMRKNPCALAHAV-- 702

Query: 528 ALLSGCVLH 536
            LL  C +H
Sbjct: 703 -LLGACHVH 710



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 168/573 (29%), Positives = 269/573 (46%), Gaps = 47/573 (8%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           ++ Y  + L+  Y K G +++A  +F+ +P  NV SW+ +I  Y+  G   + +  F  M
Sbjct: 59  VNRYIQNHLIFMYAKCGCLEDALEVFELLPNPNVFSWTALITAYAKEGHLREVLGLFRKM 118

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
            L G  P++F    VL A +    L   ++IH   V  G+E+                  
Sbjct: 119 QLDGTKPDAFVFSTVLTACSSAGALNEGKAIHDCAVLAGMETQVVGNAIVNLYGKCGRVH 178

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLV-PNAVTMLTVIRGC 160
               +FE L    LVS NA++A    N   + A+ +F+     G V PN  T ++V+  C
Sbjct: 179 EAKAVFERLPERNLVSWNALIAANAQNGHCKDAMQVFHLMDLDGSVRPNDATFVSVVDAC 238

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             L      +  H   I+ G    + V NS+++MY     +D A  +F +M  ++V+SWT
Sbjct: 239 SNLLDLPRGKSTHERIIRTGFDSYLFVGNSLVNMYGKCGSVDRARLVFEKMSSRNVVSWT 298

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAIL--GDLKRGKQLHAQVV 278
            M+  +    +   A  +++     R+ C+  A+  +  +++ L   DL R +Q+HA +V
Sbjct: 299 VMIWAYAQQGFIRAAFDLYK-----RMDCEPNAVTFMAVMDSCLRPEDLPRAEQIHAHMV 353

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKS--LVSWTAIISGYVQNGCAREA 336
             G  S+  L   ++ MY KCG +DS+ S+F  + E+S   V+W A+ISG  Q+G +++A
Sbjct: 354 ASGFDSDAVLQVCLVTMYGKCGSVDSAWSIFENLKERSNNAVTWNAMISGLAQHGESKQA 413

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
           L  F KM  E     +S+T ++ L A   L  L    QLH            ++ N +I+
Sbjct: 414 LECFWKMELEGVRP-NSVTYLASLEACSSLNDLTRGRQLHARILLENIHEA-NLSNAVIN 471

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
            Y KCG++D A   F +M   RDVVSWNT+I  Y  +G G  AL  + +M   G   D +
Sbjct: 472 MYGKCGSLDEAMDEFAKMP-ERDVVSWNTMIATYAQHGSGRQALEFFKQMDLEGWTTDRA 530

Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEH----YGCVVDLLARAGCLSDASG 512
           TYL  ++ACG       G  I + +       P  E        +V + AR G L DA  
Sbjct: 531 TYLGAIDACGSVPSLALGKTIHSIVA---TAAPCLEQDPGVATALVTMYARCGSLHDAKS 587

Query: 513 LAGKLLEGMGPNI--WRALLSGCVLHVGRFQDA 543
           +          N+  W  L++ C  H GR  +A
Sbjct: 588 V---FWRSHSRNLVTWSNLIAACAQH-GRENEA 616



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 102/383 (26%), Positives = 189/383 (49%), Gaps = 7/383 (1%)

Query: 155 TVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
           ++++ C    S A  +L+H   +  G  ++  + N ++ MY+    L+ A+++F  +   
Sbjct: 31  SLLQKCTEQKSAAAGKLVHQHILSSGCGVNRYIQNHLIFMYAKCGCLEDALEVFELLPNP 90

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
           +V SWT ++  +    +  + L +FR+M+      D      +++  +  G L  GK +H
Sbjct: 91  NVFSWTALITAYAKEGHLREVLGLFRKMQLDGTKPDAFVFSTVLTACSSAGALNEGKAIH 150

Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
              VL G+++++ + N+I+ +Y KCG +  +++VF ++ E++LVSW A+I+   QNG  +
Sbjct: 151 DCAVLAGMETQV-VGNAIVNLYGKCGRVHEAKAVFERLPERNLVSWNALIAANAQNGHCK 209

Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
           +A+  F  M  + +   +  T VS++ A   L  L      H      GF  Y  V N L
Sbjct: 210 DAMQVFHLMDLDGSVRPNDATFVSVVDACSNLLDLPRGKSTHERIIRTGFDSYLFVGNSL 269

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           ++ Y KCG+VD A +VFE+M   R+VVSW  +I+ Y   G    A  LY +M      P+
Sbjct: 270 VNMYGKCGSVDRARLVFEKMSS-RNVVSWTVMIWAYAQQGFIRAAFDLYKRMDCE---PN 325

Query: 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLA 514
           + T+++++++C           I   M+       +     C+V +  + G +  A  + 
Sbjct: 326 AVTFMAVMDSCLRPEDLPRAEQIHAHMVASGFDSDAVLQV-CLVTMYGKCGSVDSAWSIF 384

Query: 515 GKLLEGMGPNI-WRALLSGCVLH 536
             L E     + W A++SG   H
Sbjct: 385 ENLKERSNNAVTWNAMISGLAQH 407



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 67/144 (46%), Gaps = 1/144 (0%)

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLI 395
           +L   I   ++ ++S+      S+L    E  +      +H     +G    R +QN LI
Sbjct: 9   SLQTHINQLKKSSESLQPARYASLLQKCTEQKSAAAGKLVHQHILSSGCGVNRYIQNHLI 68

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
             Y+KCG ++ A  VFE +    +V SW  +I  Y   GH    L L+ KM   G  PD+
Sbjct: 69  FMYAKCGCLEDALEVFELLPN-PNVFSWTALITAYAKEGHLREVLGLFRKMQLDGTKPDA 127

Query: 456 STYLSILNACGHAGLTNDGLVIFN 479
             + ++L AC  AG  N+G  I +
Sbjct: 128 FVFSTVLTACSSAGALNEGKAIHD 151



 Score = 47.0 bits (110), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 3/83 (3%)

Query: 1   PCI--DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKA 58
           PC+  DP  ++ L++ Y + G + +A+++F     +N+V+WS +I   + +G   +++  
Sbjct: 560 PCLEQDPGVATALVTMYARCGSLHDAKSVFWRSHSRNLVTWSNLIAACAQHGRENEALDL 619

Query: 59  FSHMMLSGLLPNSFTMVGVLVAA 81
           F  M L G  P++ T    LVAA
Sbjct: 620 FREMQLQGTKPDALTF-STLVAA 641


>gi|302791754|ref|XP_002977643.1| hypothetical protein SELMODRAFT_107700 [Selaginella moellendorffii]
 gi|300154346|gb|EFJ20981.1| hypothetical protein SELMODRAFT_107700 [Selaginella moellendorffii]
          Length = 879

 Score =  241 bits (614), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 155/534 (29%), Positives = 272/534 (50%), Gaps = 31/534 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y S+ LL  Y K   +++A  +FD I  K VV W+ +I  Y+    HE++++ F  M+
Sbjct: 134 DHYVSTTLLHMYGKCSSVEDARKVFDGIRHKRVVEWNAMITAYAQQDHHEQAIQVFYAML 193

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIH------------------GLMVKFGLESD 105
           L G+     T +GVL A + L++LE+A+ +                    L+  +G   D
Sbjct: 194 LEGVKAERITFIGVLDACSKLKDLEVAKLVKLCVEEREHDHLHDSSFATALVNFYGSCGD 253

Query: 106 LFEGLK-----NPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
           L +  +        L+   A++  +   + + +A+ LF      G+  + +  + V+  C
Sbjct: 254 LEQAFRAFSRHRLELILATAMITQYTQRERWDEALELFKVMLLEGVKLDRIACMAVLNAC 313

Query: 161 VALGSRALCE--LIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
              G R L E  +IHG   ++     V+  N++++MY     L+ A+++FR M+ +DVIS
Sbjct: 314 S--GPRGLEEGRIIHGFMREIRFDRHVNAGNALINMYGKCGSLEEAVEVFRSMQHRDVIS 371

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           W  ++          +AL +   M+   +  D ++ +N + + A    L +G+ +H+ +V
Sbjct: 372 WNTIIAAHGQHSQHPEALHLLHLMQLDGVKADKISFVNALPLCATSEALAKGRMIHSWIV 431

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGY-VQNGCAREAL 337
             G+++++ L N+I+ MY  C   D +  VF  +  +  VSW A+I+ Y  Q   + EAL
Sbjct: 432 ESGIKADVMLDNAILDMYGSCKSTDDASRVFRAMKVRDQVSWNAMITAYAAQPRLSSEAL 491

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
             F +M Q      D I+ V+ L+A    A+L     LH    E G     +V N +++ 
Sbjct: 492 LLFQQM-QLHGFMPDVISFVAALSACAAQASLAEGKLLHDRIRETGLESNMTVANAVLNM 550

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           Y+K G + LA  +F +M  L DV+SWN +I  +  +GH +  L  + +M   G++P+  T
Sbjct: 551 YAKSGTLVLARKMFGKMP-LPDVISWNGMISAFAQHGHADQVLRFFRRMNHEGKLPNDVT 609

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEE-NKVKPSQEHYGCVVDLLARAGCLSDA 510
           ++S+++AC H GL  DG+ +F  ++ +   + P  EHY C+VDL+ARAG L  A
Sbjct: 610 FVSVVSACSHGGLVKDGVQLFVSLLHDFPTISPRAEHYYCMVDLIARAGKLDAA 663



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 136/567 (23%), Positives = 259/567 (45%), Gaps = 49/567 (8%)

Query: 5   PYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML 64
           P+    L+  Y   G + +A+  FD +P ++ ++W+ +I  +   G  E+++  F  M L
Sbjct: 33  PFMGDLLVRMYVDCGSLIDAKACFDRMPVQDALTWARLIRAHGQIGDSEQALHLFRSMQL 92

Query: 65  SGLLPNSFTMVGVLVA-AAGLQNLELARSIHGLMVKFGLESD------------------ 105
            G+ P +   V VL A +A  + LE  R IHG++    +ESD                  
Sbjct: 93  EGVAPVNRNFVAVLGACSADPELLEEGRRIHGVLRGTAMESDHYVSTTLLHMYGKCSSVE 152

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +F+G+++  +V  NA++  +      +QA+ +F      G+    +T + V+  C 
Sbjct: 153 DARKVFDGIRHKRVVEWNAMITAYAQQDHHEQAIQVFYAMLLEGVKAERITFIGVLDACS 212

Query: 162 ALGSRALCELIHGLTI---KLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            L    + +L+  L +   +   + D S   ++++ Y    DL+ A + F     + +++
Sbjct: 213 KLKDLEVAKLV-KLCVEEREHDHLHDSSFATALVNFYGSCGDLEQAFRAFSRHRLELILA 271

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
            T M+  +   E   +AL++F+ M    +  D +A + +++  +    L+ G+ +H    
Sbjct: 272 -TAMITQYTQRERWDEALELFKVMLLEGVKLDRIACMAVLNACSGPRGLEEGRIIH---- 326

Query: 279 LGGLQSELRLS------NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC 332
             G   E+R        N++I MY KCG L+ +  VF  +  + ++SW  II+ + Q+  
Sbjct: 327 --GFMREIRFDRHVNAGNALINMYGKCGSLEEAVEVFRSMQHRDVISWNTIIAAHGQHSQ 384

Query: 333 AREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN 392
             EAL+  + + Q      D I+ V+ L       AL     +H    E+G      + N
Sbjct: 385 HPEALH-LLHLMQLDGVKADKISFVNALPLCATSEALAKGRMIHSWIVESGIKADVMLDN 443

Query: 393 CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGH-GETALALYHKMTETGE 451
            ++  Y  C + D A  VF  M  +RD VSWN +I  Y         AL L+ +M   G 
Sbjct: 444 AILDMYGSCKSTDDASRVFRAMK-VRDQVSWNAMITAYAAQPRLSSEALLLFQQMQLHGF 502

Query: 452 VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDAS 511
           +PD  ++++ L+AC       +G ++ ++ I E  ++ +      V+++ A++G L  A 
Sbjct: 503 MPDVISFVAALSACAAQASLAEGKLLHDR-IRETGLESNMTVANAVLNMYAKSGTLVLAR 561

Query: 512 GLAGKLLEGMGPNI--WRALLSGCVLH 536
            + GK+     P++  W  ++S    H
Sbjct: 562 KMFGKMPL---PDVISWNGMISAFAQH 585



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 105/211 (49%), Gaps = 3/211 (1%)

Query: 256 NLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK 315
           +L+ V A    L  GK++HA++    +     + + ++ MY  CG L  +++ F+++  +
Sbjct: 3   DLLDVVADSRSLDLGKEVHARICKSAMDRGPFMGDLLVRMYVDCGSLIDAKACFDRMPVQ 62

Query: 316 SLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTA-SGELAALEICLQ 374
             ++W  +I  + Q G + +AL+ F  M+ E    V+    V++L A S +   LE   +
Sbjct: 63  DALTWARLIRAHGQIGDSEQALHLFRSMQLEGVAPVNR-NFVAVLGACSADPELLEEGRR 121

Query: 375 LHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNG 434
           +HG+           V   L+  Y KC +V+ A  VF+ +   R VV WN +I  Y    
Sbjct: 122 IHGVLRGTAMESDHYVSTTLLHMYGKCSSVEDARKVFDGIRHKR-VVEWNAMITAYAQQD 180

Query: 435 HGETALALYHKMTETGEVPDSSTYLSILNAC 465
           H E A+ +++ M   G   +  T++ +L+AC
Sbjct: 181 HHEQAIQVFYAMLLEGVKAERITFIGVLDAC 211


>gi|242066256|ref|XP_002454417.1| hypothetical protein SORBIDRAFT_04g030430 [Sorghum bicolor]
 gi|241934248|gb|EES07393.1| hypothetical protein SORBIDRAFT_04g030430 [Sorghum bicolor]
          Length = 703

 Score =  241 bits (614), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 166/580 (28%), Positives = 293/580 (50%), Gaps = 61/580 (10%)

Query: 5   PYNSSKLLSNYFKSGKIKE----------------AENLFDEIPEKNVVSWSIVIHGYSI 48
           P  ++ L +N  +SG +                  A +LFDE P       + ++     
Sbjct: 18  PLAAAHLHANLLRSGLLHSSHHLTAHVLAWYPPGLARDLFDEFPSPTPRLANALLRA--- 74

Query: 49  NGFHEKSMKAFSHMMLSGLLP---NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES- 104
              H ++ +  + ++L   L    + FT   +L A A L +L   R++H + ++    S 
Sbjct: 75  ---HIRARQWRAAILLGPRLRVRLDGFTFSLLLRACAALPSLAHGRAVHAVAIRSCTASE 131

Query: 105 DLFEG----------------------LKNPYLVSCNAIVAGFINNKLFQQAVLLF-NFF 141
           D F                        L+ P +V   ++V G+  N + ++A+  F    
Sbjct: 132 DAFVATAIVQMYARCGDMVGAINAYGVLEKPDIVLRTSVVTGYEQNGMAEEALEFFARNV 191

Query: 142 RGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDL 201
            G G++   VT+++ +     LG     +  H   ++  L  D+++ N+VL  Y  + D 
Sbjct: 192 VGQGVMLTPVTLVSAMSAAAQLGHVRKGQACHAYVVRNSLGYDLALVNTVLSFYVKIGDF 251

Query: 202 DAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVN 261
            A++++F  M  +DVI+W+ M+  +V    A + L+++REM K+R+  ++V L++++   
Sbjct: 252 QASMRLFEGMTDRDVITWSCMIKGYVQHGDAHEGLRMYREMVKARVQPNSVTLVSVLQAC 311

Query: 262 AILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWT 321
           A++ D + GK++H   V  G + E+ ++ +++ MY KC   + +  +F+++ +K +V+W 
Sbjct: 312 ALVVDAEEGKRVHRVAVSIGCELEVGVATALVDMYMKCSCHEEAMCLFHRMPKKDVVAWA 371

Query: 322 AIISGYVQNGCAREALNQFIKMRQEKTDSV-DSITLVSILTASGELAALEICLQLHGIAF 380
           A+I G  QN    E+L+ F  M  +  D V D+IT+V +L A  E     + + LHG   
Sbjct: 372 AVIGGLTQNELPGESLHVFKCMLLD--DHVPDAITMVKVLAACSEFGGTRLAICLHGYLV 429

Query: 381 EAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETAL 440
             GF     V   L+  YSKCG++D A  VFE     +D+V W ++I GYG +G G+ A+
Sbjct: 430 RNGFNNNAFVAAALLDLYSKCGDIDSAVRVFEGTTE-KDIVVWGSMIAGYGAHGLGQEAV 488

Query: 441 ALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDL 500
           ALY +M  +   P+S T++S+L+AC H+GL  +G+ IF+ M +   V P+ EH   +VDL
Sbjct: 489 ALYQRMIASSIQPNSVTFVSVLSACSHSGLVQEGIQIFDSMTQVFGVVPNAEHQSAMVDL 548

Query: 501 LARAGCLSDA----SGLAGKLLEGMGPNIWRALLSGCVLH 536
           L RAG L +A     G+ G+ +     + W ALL+ C  H
Sbjct: 549 LGRAGELQEAIRFIRGMDGRAV----AHTWCALLAACREH 584



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 122/451 (27%), Positives = 218/451 (48%), Gaps = 16/451 (3%)

Query: 101 GLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
           GL  DLF+   +P     NA++   I  + ++ A+LL    R   +  +  T   ++R C
Sbjct: 51  GLARDLFDEFPSPTPRLANALLRAHIRARQWRAAILLGPRLR---VRLDGFTFSLLLRAC 107

Query: 161 VALGSRALCELIHGLTIK-LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
            AL S A    +H + I+      D  V  +++ MY+   D+  AI  +  +E  D++  
Sbjct: 108 AALPSLAHGRAVHAVAIRSCTASEDAFVATAIVQMYARCGDMVGAINAYGVLEKPDIVLR 167

Query: 220 TRMMGLFVDFEYAGDALKIF-REMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           T ++  +     A +AL+ F R +    ++   V L++ +S  A LG +++G+  HA VV
Sbjct: 168 TSVVTGYEQNGMAEEALEFFARNVVGQGVMLTPVTLVSAMSAAAQLGHVRKGQACHAYVV 227

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
              L  +L L N++++ Y K GD  +S  +F  +T++ +++W+ +I GYVQ+G A E L 
Sbjct: 228 RNSLGYDLALVNTVLSFYVKIGDFQASMRLFEGMTDRDVITWSCMIKGYVQHGDAHEGLR 287

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
            + +M + +    +S+TLVS+L A   +   E   ++H +A   G      V   L+  Y
Sbjct: 288 MYREMVKARVQP-NSVTLVSVLQACALVVDAEEGKRVHRVAVSIGCELEVGVATALVDMY 346

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
            KC   + A  +F  M   +DVV+W  +I G   N     +L ++  M     VPD+ T 
Sbjct: 347 MKCSCHEEAMCLFHRMP-KKDVVAWAAVIGGLTQNELPGESLHVFKCMLLDDHVPDAITM 405

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
           + +L AC   G T   + +   ++  N    +      ++DL ++ G +  A     ++ 
Sbjct: 406 VKVLAACSEFGGTRLAICLHGYLV-RNGFNNNAFVAAALLDLYSKCGDIDSAV----RVF 460

Query: 519 EGMGPN---IWRALLSGCVLHVGRFQDAEAL 546
           EG       +W ++++G   H G  Q+A AL
Sbjct: 461 EGTTEKDIVVWGSMIAGYGAH-GLGQEAVAL 490



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 90/382 (23%), Positives = 197/382 (51%), Gaps = 24/382 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + ++ ++  Y + G +  A N +  + + ++V  + V+ GY  NG  E++++ F+  +
Sbjct: 132 DAFVATAIVQMYARCGDMVGAINAYGVLEKPDIVLRTSVVTGYEQNGMAEEALEFFARNV 191

Query: 64  L-SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------- 106
           +  G++    T+V  + AAA L ++   ++ H  +V+  L  DL                
Sbjct: 192 VGQGVMLTPVTLVSAMSAAAQLGHVRKGQACHAYVVRNSLGYDLALVNTVLSFYVKIGDF 251

Query: 107 ------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                 FEG+ +  +++ + ++ G++ +    + + ++     + + PN+VT+++V++ C
Sbjct: 252 QASMRLFEGMTDRDVITWSCMIKGYVQHGDAHEGLRMYREMVKARVQPNSVTLVSVLQAC 311

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             +      + +H + + +G  L+V V  +++DMY      + A+ +F  M  KDV++W 
Sbjct: 312 ALVVDAEEGKRVHRVAVSIGCELEVGVATALVDMYMKCSCHEEAMCLFHRMPKKDVVAWA 371

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++G     E  G++L +F+ M     + D + ++ +++  +  G  +    LH  +V  
Sbjct: 372 AVIGGLTQNELPGESLHVFKCMLLDDHVPDAITMVKVLAACSEFGGTRLAICLHGYLVRN 431

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           G  +   ++ +++ +YSKCGD+DS+  VF   TEK +V W ++I+GY  +G  +EA+  +
Sbjct: 432 GFNNNAFVAAALLDLYSKCGDIDSAVRVFEGTTEKDIVVWGSMIAGYGAHGLGQEAVALY 491

Query: 341 IKMRQEKTDSVDSITLVSILTA 362
            +M        +S+T VS+L+A
Sbjct: 492 QRMIASSIQP-NSVTFVSVLSA 512


>gi|6723387|emb|CAB66396.1| putative protein [Arabidopsis thaliana]
          Length = 1113

 Score =  241 bits (614), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 170/563 (30%), Positives = 280/563 (49%), Gaps = 38/563 (6%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIP---EKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           YNS  L+S Y KSG   +AE++F+ +    +++VVSWS ++  Y  NG    ++K F   
Sbjct: 100 YNS--LISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEF 157

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG-LESDLFEG------------ 109
           +  GL+PN +    V+ A +    + + R   G ++K G  ESD+  G            
Sbjct: 158 LELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGEN 217

Query: 110 -LKNPYLV-----SCNAIVAGFINNKLFQ-----QAVLLFNFFRGSGLVPNAVTMLTVIR 158
             +N Y V       N +    +  +  Q     +A+  F     SG   +  T+ +V  
Sbjct: 218 SFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFS 277

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYS-CLMD--LDAAIQIFREMECKD 215
            C  L + +L + +H   I+ GL+ DV    S++DMY+ C  D  +D   ++F  ME   
Sbjct: 278 ACAELENLSLGKQLHSWAIRSGLVDDVEC--SLVDMYAKCSADGSVDDCRKVFDRMEDHS 335

Query: 216 VISWTRMM-GLFVDFEYAGDALKIFREM-RKSRIICDTVALLNLISVNAILGDLKRGKQL 273
           V+SWT ++ G   +   A +A+ +F EM  +  +  +     +       L D + GKQ+
Sbjct: 336 VMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQV 395

Query: 274 HAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA 333
             Q    GL S   ++NS+I+M+ K   ++ ++  F  ++EK+LVS+   + G  +N   
Sbjct: 396 LGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNF 455

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC 393
            +A  + +    E+   V + T  S+L+    + ++    Q+H    + G    + V N 
Sbjct: 456 EQAF-KLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNA 514

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           LIS YSKCG++D A  VF  M   R+V+SW ++I G+  +G     L  +++M E G  P
Sbjct: 515 LISMYSKCGSIDTASRVFNFMEN-RNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKP 573

Query: 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL 513
           +  TY++IL+AC H GL ++G   FN M E++K+KP  EHY C+VDLL RAG L+DA   
Sbjct: 574 NEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEF 633

Query: 514 AGKLLEGMGPNIWRALLSGCVLH 536
              +       +WR  L  C +H
Sbjct: 634 INTMPFQADVLVWRTFLGACRVH 656



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 128/498 (25%), Positives = 241/498 (48%), Gaps = 36/498 (7%)

Query: 21  IKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVA 80
            + A  +FD++ E NVV+W+++I      GF  ++++ F  M+LSG   + FT+  V  A
Sbjct: 219 FENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSA 278

Query: 81  AAGLQNLELARSIHGLMVKFGLESDL-----------------------FEGLKNPYLVS 117
            A L+NL L + +H   ++ GL  D+                       F+ +++  ++S
Sbjct: 279 CAELENLSLGKQLHSWAIRSGLVDDVECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMS 338

Query: 118 CNAIVAGFINN-KLFQQAVLLFNFFRGSGLV-PNAVTMLTVIRGCVALGSRALCELIHGL 175
             A++ G++ N  L  +A+ LF+     G V PN  T  +  + C  L    + + + G 
Sbjct: 339 WTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQ 398

Query: 176 TIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG---LFVDFEYA 232
             K GL  + SV NSV+ M+     ++ A + F  +  K+++S+   +      ++FE  
Sbjct: 399 AFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFE-- 456

Query: 233 GDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSI 292
             A K+  E+ +  +        +L+S  A +G +++G+Q+H+QVV  GL     + N++
Sbjct: 457 -QAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNAL 515

Query: 293 IAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVD 352
           I+MYSKCG +D++  VFN +  ++++SWT++I+G+ ++G A   L  F +M +E     +
Sbjct: 516 ISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKP-N 574

Query: 353 SITLVSILTASGELAALEICLQLHGIAFEAGF--PRYRSVQNCLISSYSKCGNVDLAYIV 410
            +T V+IL+A   +  +    +     +E     P+      C++    + G +  A+  
Sbjct: 575 EVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYA-CMVDLLCRAGLLTDAFEF 633

Query: 411 FEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGL 470
              M F  DV+ W T +    V+ + E       K+ E  +  + + Y+ + N    AG 
Sbjct: 634 INTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILEL-DPNEPAAYIQLSNIYACAGK 692

Query: 471 TNDGLVIFNQMIEENKVK 488
             +   +  +M E N VK
Sbjct: 693 WEESTEMRRKMKERNLVK 710



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 98/345 (28%), Positives = 173/345 (50%), Gaps = 15/345 (4%)

Query: 134 AVLLFNFFRGSGLVP-NAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVL 192
           AV   +     G+ P ++VT  ++++ C+      L +L+H   I+  +  D  + NS++
Sbjct: 45  AVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLI 104

Query: 193 DMYSCLMDLDAAIQIFREME---CKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIIC 249
            +YS   D   A  +F  M     +DV+SW+ MM  + +     DA+K+F E  +  ++ 
Sbjct: 105 SLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVP 164

Query: 250 DTVALLNLISVNAILGDLKRGK-QLHAQVVLGGLQSELRLSNSIIAMYSKCGD-LDSSRS 307
           +      +I   +    +  G+  L   +  G  +S++ +  S+I M+ K  +  +++  
Sbjct: 165 NDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYK 224

Query: 308 VFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELA 367
           VF++++E ++V+WT +I+  +Q G  REA+  F+ M     +S D  TL S+ +A  EL 
Sbjct: 225 VFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFES-DKFTLSSVFSACAELE 283

Query: 368 ALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC---GNVDLAYIVFEEMGFLRDVVSWN 424
            L +  QLH  A  +G      V+  L+  Y+KC   G+VD    VF+ M     V+SW 
Sbjct: 284 NLSLGKQLHSWAIRSGL--VDDVECSLVDMYAKCSADGSVDDCRKVFDRME-DHSVMSWT 340

Query: 425 TIIYGYGVNGHGET-ALALYHKMTETGEV-PDSSTYLSILNACGH 467
            +I GY  N +  T A+ L+ +M   G V P+  T+ S   ACG+
Sbjct: 341 ALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGN 385


>gi|115460348|ref|NP_001053774.1| Os04g0602600 [Oryza sativa Japonica Group]
 gi|38344148|emb|CAE01824.2| OSJNBa0041A02.15 [Oryza sativa Japonica Group]
 gi|113565345|dbj|BAF15688.1| Os04g0602600 [Oryza sativa Japonica Group]
 gi|125549608|gb|EAY95430.1| hypothetical protein OsI_17272 [Oryza sativa Indica Group]
          Length = 804

 Score =  241 bits (614), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 163/554 (29%), Positives = 285/554 (51%), Gaps = 47/554 (8%)

Query: 16  FKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMV 75
           ++  ++     LFD +P++NVVSW+ +   Y   G  +++++ F  M+  G  P   + V
Sbjct: 158 YREARVDVVRRLFDAMPKRNVVSWNTLFGWYVKTGRPQEALELFVRMLEDGFRPTPVSFV 217

Query: 76  GVLVAAAGLQNLELARSIHGLMVKFGLE--SDLF------------------------EG 109
            +  AA    +      ++GL+VK+G+E  +DLF                          
Sbjct: 218 NIFPAAVA-DDPSWPFQLYGLLVKYGVEYINDLFVVSSAIDMFSEFGDVQSARRVFDRAA 276

Query: 110 LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVP-NAVTMLTVIRGCVALGSRAL 168
            KN  +   N ++ G++ N  F +A+ LF+   GS  VP + VT L+ +         +L
Sbjct: 277 KKNTEV--WNTMITGYVQNGQFSEAIDLFSKILGSREVPLDVVTFLSALTAASQSQDVSL 334

Query: 169 CELIHGLTIK-LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
            + +HG  IK +   L V + N+++ MYS   ++  A  +F  +  KD+++W  M+  F+
Sbjct: 335 GQQLHGYLIKGMHRTLPVILGNALVVMYSRCGNVQTAFDLFDRLPEKDIVTWNTMVTAFI 394

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
             ++  + L +  EM+KS    D+V L  ++S ++  GDL+ GKQ H  ++  G++ E  
Sbjct: 395 QNDFDLEGLLLVYEMQKSGFAADSVTLTAVLSASSNTGDLQIGKQAHGYLIRHGIEGE-G 453

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQI--TEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           L + +I MY+K G ++ ++ VF+     ++  V+W A+I+GY Q+G   +A+  F  M +
Sbjct: 454 LESYLIDMYAKSGRVEMAQRVFDSFKNAKRDEVTWNAMIAGYTQSGQPEKAILVFRAMLE 513

Query: 346 EKTDSVDSITLVSILTASGELAA-LEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
              +   S+TL S+L A   +   +    Q+H  A          V   LI  YSKCG +
Sbjct: 514 AGLEPT-SVTLASVLPACDPVGGGVYSGKQIHCFAVRRCLDTNVFVGTALIDMYSKCGEI 572

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
             A  VF  M   +  V++ T+I G G +G G+ ALAL++ M E G  PD+ T+LS ++A
Sbjct: 573 TTAENVFGGMTG-KSTVTYTTMISGLGQHGFGKKALALFNSMQEKGLKPDAVTFLSAISA 631

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C ++GL ++GL ++  M +   +  + +H+ CV DLLA+AG + +A     + +EG+G  
Sbjct: 632 CNYSGLVDEGLALYRSM-DSFGISATPQHHCCVADLLAKAGRVEEAY----EFIEGLGEE 686

Query: 525 -----IWRALLSGC 533
                IW +LL+ C
Sbjct: 687 GNFVAIWGSLLASC 700



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 123/482 (25%), Positives = 224/482 (46%), Gaps = 44/482 (9%)

Query: 19  GKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLP-NSFTMVGV 77
           G ++ A  +FD   +KN   W+ +I GY  NG   +++  FS ++ S  +P +  T +  
Sbjct: 263 GDVQSARRVFDRAAKKNTEVWNTMITGYVQNGQFSEAIDLFSKILGSREVPLDVVTFLSA 322

Query: 78  LVAAAGLQNLELARSIHGLMVKFGLES------------------------DLFEGLKNP 113
           L AA+  Q++ L + +HG ++K G+                          DLF+ L   
Sbjct: 323 LTAASQSQDVSLGQQLHGYLIK-GMHRTLPVILGNALVVMYSRCGNVQTAFDLFDRLPEK 381

Query: 114 YLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIH 173
            +V+ N +V  FI N    + +LL    + SG   ++VT+  V+      G   + +  H
Sbjct: 382 DIVTWNTMVTAFIQNDFDLEGLLLVYEMQKSGFAADSVTLTAVLSASSNTGDLQIGKQAH 441

Query: 174 GLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME--CKDVISWTRMMGLFVDFEY 231
           G  I+ G I    + + ++DMY+    ++ A ++F   +   +D ++W  M+  +     
Sbjct: 442 GYLIRHG-IEGEGLESYLIDMYAKSGRVEMAQRVFDSFKNAKRDEVTWNAMIAGYTQSGQ 500

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISV-NAILGDLKRGKQLHAQVVLGGLQSELRLSN 290
              A+ +FR M ++ +   +V L +++   + + G +  GKQ+H   V   L + + +  
Sbjct: 501 PEKAILVFRAMLEAGLEPTSVTLASVLPACDPVGGGVYSGKQIHCFAVRRCLDTNVFVGT 560

Query: 291 SIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDS 350
           ++I MYSKCG++ ++ +VF  +T KS V++T +ISG  Q+G  ++AL  F  M QEK   
Sbjct: 561 ALIDMYSKCGEITTAENVFGGMTGKSTVTYTTMISGLGQHGFGKKALALFNSM-QEKGLK 619

Query: 351 VDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIV 410
            D++T +S ++A      ++  L L+      G         C+    +K G V+ AY  
Sbjct: 620 PDAVTFLSAISACNYSGLVDEGLALYRSMDSFGISATPQHHCCVADLLAKAGRVEEAYEF 679

Query: 411 FEEMGFLRDVVS-WNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAG 469
            E +G   + V+ W +++      G  E A  +  K+            L I    GHAG
Sbjct: 680 IEGLGEEGNFVAIWGSLLASCKAQGKQELAKLVTKKL------------LDIEKQYGHAG 727

Query: 470 LT 471
            +
Sbjct: 728 YS 729



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 116/443 (26%), Positives = 215/443 (48%), Gaps = 21/443 (4%)

Query: 106 LFEGL-KNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVP---NAVTMLTVIRGCV 161
           L E L + P  + CNA++  +    L ++A+ L+     +   P   +  T    +  C 
Sbjct: 57  LLEALPRPPPTLLCNALLIAYAARALPEEALRLYALLNHAARPPVRSDHYTYSAALTACA 116

Query: 162 ALGSRALCELIHGLTIKLGLIL-DVSV-NNSVLDMYSCLMD-----LDAAIQIFREMECK 214
                 L   +H   ++    L D +V  NS+L++Y+  +      +D   ++F  M  +
Sbjct: 117 RSRRLRLGRSVHAHMLRRARSLPDTAVLRNSLLNLYASSVRYREARVDVVRRLFDAMPKR 176

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
           +V+SW  + G +V      +AL++F  M +       V+ +N+    A+  D     QL+
Sbjct: 177 NVVSWNTLFGWYVKTGRPQEALELFVRMLEDGFRPTPVSFVNIFPA-AVADDPSWPFQLY 235

Query: 275 AQVVLGGLQ--SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC 332
             +V  G++  ++L + +S I M+S+ GD+ S+R VF++  +K+   W  +I+GYVQNG 
Sbjct: 236 GLLVKYGVEYINDLFVVSSAIDMFSEFGDVQSARRVFDRAAKKNTEVWNTMITGYVQNGQ 295

Query: 333 AREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV-- 390
             EA++ F K+   +   +D +T +S LTA+ +   + +  QLHG   + G  R   V  
Sbjct: 296 FSEAIDLFSKILGSREVPLDVVTFLSALTAASQSQDVSLGQQLHGYLIK-GMHRTLPVIL 354

Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
            N L+  YS+CGNV  A+ +F+ +   +D+V+WNT++  +  N      L L ++M ++G
Sbjct: 355 GNALVVMYSRCGNVQTAFDLFDRLP-EKDIVTWNTMVTAFIQNDFDLEGLLLVYEMQKSG 413

Query: 451 EVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
              DS T  ++L+A  + G    G      +I         E Y  ++D+ A++G +  A
Sbjct: 414 FAADSVTLTAVLSASSNTGDLQIGKQAHGYLIRHGIEGEGLESY--LIDMYAKSGRVEMA 471

Query: 511 SGLAGKLLEGMGPNI-WRALLSG 532
             +           + W A+++G
Sbjct: 472 QRVFDSFKNAKRDEVTWNAMIAG 494



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 97/436 (22%), Positives = 197/436 (45%), Gaps = 35/436 (8%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+  Y + G ++ A +LFD +PEK++V+W+ ++  +  N F  + +     M  SG   +
Sbjct: 358 LVVMYSRCGNVQTAFDLFDRLPEKDIVTWNTMVTAFIQNDFDLEGLLLVYEMQKSGFAAD 417

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------LFEG 109
           S T+  VL A++   +L++ +  HG +++ G+E +                     +F+ 
Sbjct: 418 SVTLTAVLSASSNTGDLQIGKQAHGYLIRHGIEGEGLESYLIDMYAKSGRVEMAQRVFDS 477

Query: 110 LKNPYL--VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRA 167
            KN     V+ NA++AG+  +   ++A+L+F     +GL P +VT+ +V+  C  +G   
Sbjct: 478 FKNAKRDEVTWNAMIAGYTQSGQPEKAILVFRAMLEAGLEPTSVTLASVLPACDPVGGGV 537

Query: 168 LC-ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
              + IH   ++  L  +V V  +++DMYS   ++  A  +F  M  K  +++T M+   
Sbjct: 538 YSGKQIHCFAVRRCLDTNVFVGTALIDMYSKCGEITTAENVFGGMTGKSTVTYTTMISGL 597

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
               +   AL +F  M++  +  D V  L+ IS     G +  G  L+  +   G+ +  
Sbjct: 598 GQHGFGKKALALFNSMQEKGLKPDAVTFLSAISACNYSGLVDEGLALYRSMDSFGISATP 657

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKS--LVSWTAIISGYVQNG---CAREALNQFI 341
           +    +  + +K G ++ +      + E+   +  W ++++     G    A+    + +
Sbjct: 658 QHHCCVADLLAKAGRVEEAYEFIEGLGEEGNFVAIWGSLLASCKAQGKQELAKLVTKKLL 717

Query: 342 KMRQEKTDSVDSITLVSILTASGEL---AALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
            + ++   +  S+ L  +L A        +L   ++  G+  EAG   +  VQN  +   
Sbjct: 718 DIEKQYGHAGYSVLLSQVLAAESNWNSADSLRKEMRARGLKKEAG-SSWIKVQNAALE-- 774

Query: 399 SKCGNVDLAYIVFEEM 414
            K    D  Y+  E M
Sbjct: 775 HKFIEKDQNYVENEHM 790


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  241 bits (614), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 171/634 (26%), Positives = 290/634 (45%), Gaps = 127/634 (20%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           YN+  L++ Y K G +K A N+FD IP+ N+ SW+ ++  YS  G+              
Sbjct: 43  YNN--LINTYGKLGDLKNARNVFDHIPQPNLFSWNTLLSAYSKLGY-------------- 86

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGF 125
                             LQ+++                 +F+ + N  +VS N++++G+
Sbjct: 87  ------------------LQDMQ----------------RVFDSMPNHDVVSWNSLLSGY 112

Query: 126 INNKLFQQAVLLFNFFRGSGLVP-NAVTMLTVI-----RGCVALGSRALCELIHGLTIKL 179
             N L  ++V ++N     G V  N +T  T++     RG V LG +     IHG   K 
Sbjct: 113 AGNGLISESVRVYNMMLKDGSVNLNRITFSTMLILSSNRGFVDLGRQ-----IHGQIFKF 167

Query: 180 GLILDVSVNNSVLDMYSCLMDLDAAIQIFRE----------------------------- 210
           G    + V + ++DMY+    ++ A +IF E                             
Sbjct: 168 GYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLF 227

Query: 211 --MECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLK 268
             M  KD ISWT ++          +A+  F+EM       D     ++++       L 
Sbjct: 228 DNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALD 287

Query: 269 RGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYV 328
            GKQ+HA ++    Q  + + ++++ MY KC ++  + +VF ++  K+++SWTA++ GY 
Sbjct: 288 EGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYG 347

Query: 329 QNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYR 388
           QNG + EA+  F  M++ +    D  TL S++++   LA+LE   Q HG A  +G   + 
Sbjct: 348 QNGYSEEAVRIFCDMQRNEIHP-DDFTLGSVISSCANLASLEEGAQFHGQALASGLICFV 406

Query: 389 SVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTE 448
           +V N LI+ Y KCG+++ A+ +F EM  +RD VSW  ++ GY   G     ++L+  M  
Sbjct: 407 TVSNALITLYGKCGSLEHAHQLFHEMK-IRDEVSWTALVSGYAQFGKANETISLFETMLA 465

Query: 449 TGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLS 508
            G VPD  T++ +L+AC  AGL   G   F  M++E+++ P  +HY C++DLL+RAG L 
Sbjct: 466 HGIVPDGVTFVGVLSACSRAGLVEKGYHYFECMVKEHRITPIPDHYTCMIDLLSRAGRLE 525

Query: 509 DASGLAGKLLEGMGPNIWRALLSGCVLH-------------------------------- 536
           +A     ++        W  LLS C L+                                
Sbjct: 526 EAKNFINQMPFSPDAIGWATLLSSCRLNGNLEIGKWAAESLHKLEPQNPASYILLSSIYA 585

Query: 537 -VGRFQDAEALRSGSQKKGIIKIPGISFLNSTSR 569
             G++ D   LR G ++ G+ K PG S++   ++
Sbjct: 586 AKGKWDDVAKLRKGMREMGVKKEPGHSWIKYKNK 619



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 139/526 (26%), Positives = 239/526 (45%), Gaps = 69/526 (13%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  + ++ + LLS Y K G +++ + +FD +P  +VVSW+ ++ GY+ NG   +S++ ++
Sbjct: 67  PQPNLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYN 126

Query: 61  HMMLSGLLP-NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES--------------- 104
            M+  G +  N  T   +L+ ++    ++L R IHG + KFG +S               
Sbjct: 127 MMLKDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKT 186

Query: 105 --------------------------------------DLFEGLKNPYLVSCNAIVAGFI 126
                                                  LF+ +     +S   I+ G  
Sbjct: 187 GFINDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLT 246

Query: 127 NNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVS 186
            N LF++AV  F      G   +  T  +V+  C    +    + IH   I+     ++ 
Sbjct: 247 QNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIF 306

Query: 187 VNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSR 246
           V +++LDMY    ++  A  +FR+M  K+VISWT M+  +    Y+ +A++IF +M+++ 
Sbjct: 307 VGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNE 366

Query: 247 IICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSR 306
           I  D   L ++IS  A L  L+ G Q H Q +  GL   + +SN++I +Y KCG L+ + 
Sbjct: 367 IHPDDFTLGSVISSCANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEHAH 426

Query: 307 SVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGEL 366
            +F+++  +  VSWTA++SGY Q G A E ++ F  M        D +T V +L+A    
Sbjct: 427 QLFHEMKIRDEVSWTALVSGYAQFGKANETISLFETMLAHGI-VPDGVTFVGVLSACSRA 485

Query: 367 AALEICLQLHGIAFEAGFPRYRSVQ-----NCLISSYSKCGNVDLAYIVFEEMGFLRDVV 421
             +E         FE     +R         C+I   S+ G ++ A     +M F  D +
Sbjct: 486 GLVEKGYHY----FECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMPFSPDAI 541

Query: 422 SWNTIIYGYGVNGH---GETALALYHKMTETGEVPDSSTYLSILNA 464
            W T++    +NG+   G+ A    HK+      P S   LS + A
Sbjct: 542 GWATLLSSCRLNGNLEIGKWAAESLHKLEPQN--PASYILLSSIYA 585



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 95/389 (24%), Positives = 167/389 (42%), Gaps = 65/389 (16%)

Query: 157 IRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
           ++ C    +RA  + +H   I+     +  + N++++ Y  L DL  A  +F  +   ++
Sbjct: 12  LKFCCEARNRAQVKKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIPQPNL 71

Query: 217 ISWTRMMGLFVDFEYAGDALKIFREMRKSRIIC--------------------------D 250
            SW  ++  +    Y  D  ++F  M    ++                           D
Sbjct: 72  FSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKD 131

Query: 251 TVALLNLISVNAIL------GDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDS 304
               LN I+ + +L      G +  G+Q+H Q+   G QS L + + ++ MY+K G ++ 
Sbjct: 132 GSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFIND 191

Query: 305 SRSVFNQITEKSLV-------------------------------SWTAIISGYVQNGCA 333
           +  +F +I EK++V                               SWT II+G  QNG  
Sbjct: 192 ANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLF 251

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC 393
           +EA+++F +M  E    +D  T  S+LTA G   AL+   Q+H       +     V + 
Sbjct: 252 KEAVDKFKEMGIEGF-CMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSA 310

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           L+  Y KC NV  A  VF +M   ++V+SW  ++ GYG NG+ E A+ ++  M      P
Sbjct: 311 LLDMYCKCRNVKYAEAVFRKMRH-KNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHP 369

Query: 454 DSSTYLSILNACGHAGLTNDGLVIFNQMI 482
           D  T  S++++C +     +G     Q +
Sbjct: 370 DDFTLGSVISSCANLASLEEGAQFHGQAL 398


>gi|125591533|gb|EAZ31883.1| hypothetical protein OsJ_16048 [Oryza sativa Japonica Group]
          Length = 674

 Score =  241 bits (614), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 163/554 (29%), Positives = 285/554 (51%), Gaps = 47/554 (8%)

Query: 16  FKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMV 75
           ++  ++     LFD +P++NVVSW+ +   Y   G  +++++ F  M+  G  P   + V
Sbjct: 28  YREARVDVVRRLFDAMPKRNVVSWNTLFGWYVKTGRPQEALELFVRMLEDGFRPTPVSFV 87

Query: 76  GVLVAAAGLQNLELARSIHGLMVKFGLE--SDLF------------------------EG 109
            +  AA    +      ++GL+VK+G+E  +DLF                          
Sbjct: 88  NIFPAAVA-DDPSWPFQLYGLLVKYGVEYINDLFVVSSAIDMFSEFGDVQSARRVFDRAA 146

Query: 110 LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVP-NAVTMLTVIRGCVALGSRAL 168
            KN  +   N ++ G++ N  F +A+ LF+   GS  VP + VT L+ +         +L
Sbjct: 147 KKNTEV--WNTMITGYVQNGQFSEAIDLFSKILGSREVPLDVVTFLSALTAASQSQDVSL 204

Query: 169 CELIHGLTIK-LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
            + +HG  IK +   L V + N+++ MYS   ++  A  +F  +  KD+++W  M+  F+
Sbjct: 205 GQQLHGYLIKGMHRTLPVILGNALVVMYSRCGNVQTAFDLFDRLPEKDIVTWNTMVTAFI 264

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
             ++  + L +  EM+KS    D+V L  ++S ++  GDL+ GKQ H  ++  G++ E  
Sbjct: 265 QNDFDLEGLLLVYEMQKSGFAADSVTLTAVLSASSNTGDLQIGKQAHGYLIRHGIEGE-G 323

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQI--TEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           L + +I MY+K G ++ ++ VF+     ++  V+W A+I+GY Q+G   +A+  F  M +
Sbjct: 324 LESYLIDMYAKSGRVEMAQRVFDSFKNAKRDEVTWNAMIAGYTQSGQPEKAILVFRAMLE 383

Query: 346 EKTDSVDSITLVSILTASGEL-AALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
              +   S+TL S+L A   +   +    Q+H  A          V   LI  YSKCG +
Sbjct: 384 AGLEPT-SVTLASVLPACDPVGGGVYSGKQIHCFAVRRCLDTNVFVGTALIDMYSKCGEI 442

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
             A  VF  M   +  V++ T+I G G +G G+ ALAL++ M E G  PD+ T+LS ++A
Sbjct: 443 TTAENVFGGMTG-KSTVTYTTMISGLGQHGFGKKALALFNSMQEKGLKPDAVTFLSAISA 501

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C ++GL ++GL ++  M +   +  + +H+ CV DLLA+AG + +A     + +EG+G  
Sbjct: 502 CNYSGLVDEGLALYRSM-DSFGISATPQHHCCVADLLAKAGRVEEAY----EFIEGLGEE 556

Query: 525 -----IWRALLSGC 533
                IW +LL+ C
Sbjct: 557 GNFVAIWGSLLASC 570



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 125/497 (25%), Positives = 230/497 (46%), Gaps = 44/497 (8%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  S  +  + + G ++ A  +FD   +KN   W+ +I GY  NG   +++  FS ++
Sbjct: 118 DLFVVSSAIDMFSEFGDVQSARRVFDRAAKKNTEVWNTMITGYVQNGQFSEAIDLFSKIL 177

Query: 64  LSGLLP-NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES------------------ 104
            S  +P +  T +  L AA+  Q++ L + +HG ++K G+                    
Sbjct: 178 GSREVPLDVVTFLSALTAASQSQDVSLGQQLHGYLIK-GMHRTLPVILGNALVVMYSRCG 236

Query: 105 ------DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                 DLF+ L    +V+ N +V  FI N    + +LL    + SG   ++VT+  V+ 
Sbjct: 237 NVQTAFDLFDRLPEKDIVTWNTMVTAFIQNDFDLEGLLLVYEMQKSGFAADSVTLTAVLS 296

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC--KDV 216
                G   + +  HG  I+ G I    + + ++DMY+    ++ A ++F   +   +D 
Sbjct: 297 ASSNTGDLQIGKQAHGYLIRHG-IEGEGLESYLIDMYAKSGRVEMAQRVFDSFKNAKRDE 355

Query: 217 ISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISV-NAILGDLKRGKQLHA 275
           ++W  M+  +        A+ +FR M ++ +   +V L +++   + + G +  GKQ+H 
Sbjct: 356 VTWNAMIAGYTQSGQPEKAILVFRAMLEAGLEPTSVTLASVLPACDPVGGGVYSGKQIHC 415

Query: 276 QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
             V   L + + +  ++I MYSKCG++ ++ +VF  +T KS V++T +ISG  Q+G  ++
Sbjct: 416 FAVRRCLDTNVFVGTALIDMYSKCGEITTAENVFGGMTGKSTVTYTTMISGLGQHGFGKK 475

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLI 395
           AL  F  M QEK    D++T +S ++A      ++  L L+      G         C+ 
Sbjct: 476 ALALFNSM-QEKGLKPDAVTFLSAISACNYSGLVDEGLALYRSMDSFGISATPQHHCCVA 534

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVS-WNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
              +K G V+ AY   E +G   + V+ W +++      G  E A  +  K+        
Sbjct: 535 DLLAKAGRVEEAYEFIEGLGEEGNFVAIWGSLLASCKAQGKQELAKLVTKKL-------- 586

Query: 455 SSTYLSILNACGHAGLT 471
               L I    GHAG +
Sbjct: 587 ----LDIEKQYGHAGYS 599



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/356 (27%), Positives = 182/356 (51%), Gaps = 15/356 (4%)

Query: 187 VNNSVLDMYSCLMD-----LDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFRE 241
           + NS+L++Y+  +      +D   ++F  M  ++V+SW  + G +V      +AL++F  
Sbjct: 14  LRNSLLNLYASSVRYREARVDVVRRLFDAMPKRNVVSWNTLFGWYVKTGRPQEALELFVR 73

Query: 242 MRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ--SELRLSNSIIAMYSKC 299
           M +       V+ +N+    A+  D     QL+  +V  G++  ++L + +S I M+S+ 
Sbjct: 74  MLEDGFRPTPVSFVNIFPA-AVADDPSWPFQLYGLLVKYGVEYINDLFVVSSAIDMFSEF 132

Query: 300 GDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSI 359
           GD+ S+R VF++  +K+   W  +I+GYVQNG   EA++ F K+   +   +D +T +S 
Sbjct: 133 GDVQSARRVFDRAAKKNTEVWNTMITGYVQNGQFSEAIDLFSKILGSREVPLDVVTFLSA 192

Query: 360 LTASGELAALEICLQLHGIAFEAGFPRYRSV--QNCLISSYSKCGNVDLAYIVFEEMGFL 417
           LTA+ +   + +  QLHG   + G  R   V   N L+  YS+CGNV  A+ +F+ +   
Sbjct: 193 LTAASQSQDVSLGQQLHGYLIK-GMHRTLPVILGNALVVMYSRCGNVQTAFDLFDRLP-E 250

Query: 418 RDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVI 477
           +D+V+WNT++  +  N      L L ++M ++G   DS T  ++L+A  + G    G   
Sbjct: 251 KDIVTWNTMVTAFIQNDFDLEGLLLVYEMQKSGFAADSVTLTAVLSASSNTGDLQIGKQA 310

Query: 478 FNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI-WRALLSG 532
              +I         E Y  ++D+ A++G +  A  +           + W A+++G
Sbjct: 311 HGYLIRHGIEGEGLESY--LIDMYAKSGRVEMAQRVFDSFKNAKRDEVTWNAMIAG 364


>gi|108706064|gb|ABF93859.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|125584837|gb|EAZ25501.1| hypothetical protein OsJ_09324 [Oryza sativa Japonica Group]
          Length = 781

 Score =  241 bits (614), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 167/624 (26%), Positives = 297/624 (47%), Gaps = 60/624 (9%)

Query: 7   NSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSG 66
           +S  L+ +    G++ EA      +   +    +++I G++  G    ++ A+  M+  G
Sbjct: 43  SSKSLVVSLAAEGRMDEAVEALAAVRGPDAFLHNVMIRGFADAGLPAGALAAYRGMLEDG 102

Query: 67  LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL-------------------- 106
             P+ FT   V+   A L  L+  R+ HG+++K GLE D+                    
Sbjct: 103 ARPDRFTFPVVVKCCARLGGLDEGRAAHGMVIKLGLEHDVYTCNSLVAFYAKLGLVEDAE 162

Query: 107 --FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVP-NAVTMLTVIRGCVAL 163
             F+G+    +V+ N +V G+++N L   A+  F     +  V  ++V ++  +  C   
Sbjct: 163 RVFDGMPVRDIVTWNTMVDGYVSNGLGSLALACFQEMHDALEVQHDSVGIIAALAACCLE 222

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
            S    + IHG  I+ GL  D+ V  S+LDMY    ++  A  +F  M  + V++W  M+
Sbjct: 223 VSSMQGKEIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAYARSVFATMPLRTVVTWNCMI 282

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
           G +   E   +A   F +MR   +  + V  +NL++  A       G+ +H  VV     
Sbjct: 283 GGYALNERPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTESSLYGRSVHGYVVRRQFL 342

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
             + L  +++ MY K G ++SS  +F +I  K+LVSW  +I+ Y+      EA+  F+++
Sbjct: 343 PHVVLETALLEMYGKVGKVESSEKIFGKIANKTLVSWNNMIAAYMYKEMYTEAITLFLEL 402

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
             +     D  T+ +++ A   L +L  C Q+H      G+     + N ++  Y++ G+
Sbjct: 403 LNQPLYP-DYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAENTLIMNAVLHMYARSGD 461

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           V  +  +F++M   +DV+SWNT+I GY ++G G+TAL ++ +M   G  P+ ST++S+L 
Sbjct: 462 VVASREIFDKM-VSKDVISWNTMIMGYAIHGQGKTALEMFDEMKYNGLQPNESTFVSVLT 520

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
           AC  +GL ++G + FN M++E  + P  EHYGC+ DLL R G L +       +      
Sbjct: 521 ACSVSGLVDEGWMHFNLMLQEYGMIPQIEHYGCMTDLLGREGDLREVLQFIESMPIDPTS 580

Query: 524 NIWRALL--------------------------SGCVL-------HVGRFQDAEALRSGS 550
            +W +LL                          +GC +         GR++D E +R   
Sbjct: 581 RVWGSLLTASRNQNDIDIAEYAAERIFQLEHDNTGCYIVLSSMYADAGRWEDVERVRLLM 640

Query: 551 QKKGIIKIPGISF--LNSTSRDFG 572
           ++KG+ +   IS   L+ST+  F 
Sbjct: 641 KEKGLRRTEPISLVELHSTACSFA 664



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 96/385 (24%), Positives = 190/385 (49%), Gaps = 30/385 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + L++ Y K G +++AE +FD +P +++V+W+ ++ GY  NG    ++  F  M 
Sbjct: 141 DVYTCNSLVAFYAKLGLVEDAERVFDGMPVRDIVTWNTMVDGYVSNGLGSLALACFQEM- 199

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELA----RSIHGLMVKFGLESDL------------- 106
               L      VG++ A A    LE++    + IHG +++ GLE D+             
Sbjct: 200 -HDALEVQHDSVGIIAALAAC-CLEVSSMQGKEIHGYVIRHGLEQDIKVGTSLLDMYCKC 257

Query: 107 ---------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
                    F  +    +V+ N ++ G+  N+   +A   F   R  GL    VT + ++
Sbjct: 258 GEVAYARSVFATMPLRTVVTWNCMIGGYALNERPDEAFDCFMQMRAEGLQVEVVTAINLL 317

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
             C    S      +HG  ++   +  V +  ++L+MY  +  ++++ +IF ++  K ++
Sbjct: 318 AACAQTESSLYGRSVHGYVVRRQFLPHVVLETALLEMYGKVGKVESSEKIFGKIANKTLV 377

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           SW  M+  ++  E   +A+ +F E+    +  D   +  ++    +LG L+  +Q+H+ +
Sbjct: 378 SWNNMIAAYMYKEMYTEAITLFLELLNQPLYPDYFTMSTVVPAFVLLGSLRHCRQIHSYI 437

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           +  G      + N+++ MY++ GD+ +SR +F+++  K ++SW  +I GY  +G  + AL
Sbjct: 438 IGLGYAENTLIMNAVLHMYARSGDVVASREIFDKMVSKDVISWNTMIMGYAIHGQGKTAL 497

Query: 338 NQFIKMRQEKTDSVDSITLVSILTA 362
             F +M+       +S T VS+LTA
Sbjct: 498 EMFDEMKYNGLQPNES-TFVSVLTA 521


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  240 bits (613), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 139/434 (32%), Positives = 236/434 (54%), Gaps = 7/434 (1%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           LF+ +    LVS  A+++G   N  F +A+  F   R  G VP      + IR C +LGS
Sbjct: 62  LFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGS 121

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
             + + +H L +K G+  ++ V +++ DMYS    +  A ++F EM CKD +SWT M+  
Sbjct: 122 IEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDG 181

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +       +AL  F++M    +  D   L + +     L   K G+ +H+ VV  G +S+
Sbjct: 182 YSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESD 241

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITE-KSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           + + N++  MYSK GD++S+ +VF   +E +++VS+T +I GYV+     + L+ F+++R
Sbjct: 242 IFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELR 301

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
           ++  +  +  T  S++ A    AALE   QLH    +  F     V + L+  Y KCG +
Sbjct: 302 RQGIEP-NEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLL 360

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           + A   F+E+G   + ++WN+++  +G +G G+ A+ ++ +M + G  P++ T++S+L  
Sbjct: 361 EQAIQAFDEIGDPTE-IAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTG 419

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C HAGL  +GL  F  M +   V P +EHY CV+DLL RAG L +A     ++     PN
Sbjct: 420 CSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRM--PFEPN 477

Query: 525 I--WRALLSGCVLH 536
              W + L  C +H
Sbjct: 478 AFGWCSFLGACRIH 491



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 120/461 (26%), Positives = 228/461 (49%), Gaps = 27/461 (5%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           PC   + ++ L++ Y K G++  A  LFD +P++N+VSW+ +I G S N    ++++ F 
Sbjct: 38  PCT--FLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFC 95

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPYL--- 115
            M + G +P  F     + A A L ++E+ + +H L +KFG+ S+LF G  L++ Y    
Sbjct: 96  GMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCG 155

Query: 116 -----------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                            VS  A++ G+     F++A+L F       +  +   + + + 
Sbjct: 156 AMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLG 215

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFR-EMECKDVI 217
            C AL +      +H   +KLG   D+ V N++ DMYS   D+++A  +F  + EC++V+
Sbjct: 216 ACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVV 275

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           S+T ++  +V+ E     L +F E+R+  I  +     +LI   A    L++G QLHAQV
Sbjct: 276 SYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQV 335

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           +      +  +S+ ++ MY KCG L+ +   F++I + + ++W +++S + Q+G  ++A+
Sbjct: 336 MKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAI 395

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQ-LHGIAFEAGFPRYRSVQNCLIS 396
             F +M  ++    ++IT +S+LT       +E  L   + +    G        +C+I 
Sbjct: 396 KIFERM-VDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVID 454

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGE 437
              + G +  A      M F  +   W + +    ++G  E
Sbjct: 455 LLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKE 495



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 103/341 (30%), Positives = 169/341 (49%), Gaps = 6/341 (1%)

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           +H L I  G      + N +++MYS   +LD A+++F  M  ++++SWT M+        
Sbjct: 27  LHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQNSK 86

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
             +A++ F  MR    +    A  + I   A LG ++ GKQ+H   +  G+ SEL + ++
Sbjct: 87  FSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSN 146

Query: 292 IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
           +  MYSKCG +  +  VF ++  K  VSWTA+I GY + G   EAL  F KM  E+  ++
Sbjct: 147 LEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEV-TI 205

Query: 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVF 411
           D   L S L A G L A +    +H    + GF     V N L   YSK G+++ A  VF
Sbjct: 206 DQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVF 265

Query: 412 EEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLT 471
                 R+VVS+  +I GY      E  L+++ ++   G  P+  T+ S++ AC +    
Sbjct: 266 GIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAAL 325

Query: 472 NDGLVIFNQMIEENKVKPSQEHY--GCVVDLLARAGCLSDA 510
             G  +  Q++   K+   ++ +    +VD+  + G L  A
Sbjct: 326 EQGTQLHAQVM---KINFDEDPFVSSILVDMYGKCGLLEQA 363



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/217 (37%), Positives = 114/217 (52%), Gaps = 2/217 (0%)

Query: 250 DTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVF 309
           DT AL ++I   A    L+RGKQLHA ++  G      L+N ++ MYSKCG+LD +  +F
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 310 NQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAAL 369
           + + +++LVSWTA+ISG  QN    EA+  F  MR    +        S + A   L ++
Sbjct: 64  DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRI-CGEVPTQFAFSSAIRACASLGSI 122

Query: 370 EICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYG 429
           E+  Q+H +A + G      V + L   YSKCG +  A  VFEEM   +D VSW  +I G
Sbjct: 123 EMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMP-CKDEVSWTAMIDG 181

Query: 430 YGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           Y   G  E AL  + KM +     D     S L ACG
Sbjct: 182 YSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACG 218


>gi|222622013|gb|EEE56145.1| hypothetical protein OsJ_05030 [Oryza sativa Japonica Group]
          Length = 742

 Score =  240 bits (613), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 161/577 (27%), Positives = 269/577 (46%), Gaps = 86/577 (14%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           LL+ Y KSG++  A  +FDE+P+                                   PN
Sbjct: 54  LLTAYAKSGRLARARRVFDEMPD-----------------------------------PN 78

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKL 130
            FT   +L A A           H  +V   +E  LF  +     VS NA++ GF +   
Sbjct: 79  LFTRNALLSALA-----------HSRLVP-DMER-LFASMPERDAVSYNALITGFSSTGS 125

Query: 131 FQQAVLLFN-FFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNN 189
             ++V L+    R   + P  +T+  +I    AL  RAL   +H   ++LG      V +
Sbjct: 126 PARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGS 185

Query: 190 SVLDMYSCLMDLDAAIQIFREMECK-------------------------------DVIS 218
            ++DMY+ +  +  A ++F+EME K                               D I+
Sbjct: 186 PLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSIT 245

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           WT M+          +AL +FR MR   +  D     ++++    L  L+ GKQ+HA + 
Sbjct: 246 WTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYIT 305

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
               +  + + ++++ MYSKC  +  + +VF ++T ++++SWTA+I GY QN C+ EA+ 
Sbjct: 306 RTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVR 365

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
            F +M+ +     D  TL S++++   LA+LE   Q H +A  +G  RY +V N L++ Y
Sbjct: 366 AFSEMQMDGIKP-DDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLY 424

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
            KCG+++ A+ +F+EM F  D VSW  ++ GY   G  +  + L+ KM   G  PD  T+
Sbjct: 425 GKCGSIEDAHRLFDEMSF-HDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTF 483

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
           + +L+AC  AGL   G   F+ M +++ + P  +HY C++DL +R+G   +A     ++ 
Sbjct: 484 IGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMP 543

Query: 519 EGMGPNIWRALLSGCVLH----VGRFQDAEALRSGSQ 551
                  W  LLS C L     +G++     L +  Q
Sbjct: 544 HSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQ 580



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 126/519 (24%), Positives = 232/519 (44%), Gaps = 59/519 (11%)

Query: 4   DP--YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           DP  +  + LLS    S  + + E LF  +PE++ VS++ +I G+S  G   +S++ +  
Sbjct: 76  DPNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRA 135

Query: 62  MML-SGLLPNSFTMVGVLVAAAGLQNLELARSIH-------------------GLMVKFG 101
           ++    + P   T+  +++ A+ L +  L  S+H                    +  K G
Sbjct: 136 LLREESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMG 195

Query: 102 LESD---LFEGLKNPYLVSCNAIVAGFINNK-------LFQ------------------- 132
           L  D   +F+ ++   +V  N ++ G +  K       LFQ                   
Sbjct: 196 LIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQ 255

Query: 133 -----QAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSV 187
                +A+ +F   R  G+  +  T  +++  C AL +    + IH    +     +V V
Sbjct: 256 NGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFV 315

Query: 188 NNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRI 247
            ++++DMYS    +  A  +FR M C+++ISWT M+  +     + +A++ F EM+   I
Sbjct: 316 GSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGI 375

Query: 248 ICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRS 307
             D   L ++IS  A L  L+ G Q H   ++ GL   + +SN+++ +Y KCG ++ +  
Sbjct: 376 KPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHR 435

Query: 308 VFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELA 367
           +F++++    VSWTA+++GY Q G A+E ++ F KM        D +T + +L+A     
Sbjct: 436 LFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKP-DGVTFIGVLSACSRAG 494

Query: 368 ALEI-CLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTI 426
            +E  C     +  + G         C+I  YS+ G    A    ++M    D   W T+
Sbjct: 495 LVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATL 554

Query: 427 IYGYGVNGHGETALALYHKMTETG-EVPDSSTYLSILNA 464
           +    + G+ E        + ET  + P S   L  ++A
Sbjct: 555 LSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHA 593



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 108/257 (42%), Gaps = 34/257 (13%)

Query: 251 TVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFN 310
           T  L +L++  A  G L R +++  ++        L   N++++  +    +     +F 
Sbjct: 48  TFLLNHLLTAYAKSGRLARARRVFDEMP----DPNLFTRNALLSALAHSRLVPDMERLFA 103

Query: 311 QITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALE 370
            + E+  VS+ A+I+G+   G    ++  +  + +E++     ITL +++  +  L+   
Sbjct: 104 SMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRA 163

Query: 371 ICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-------------GFL 417
           +   +H      GF  Y  V + L+  Y+K G +  A  VF+EM             G L
Sbjct: 164 LGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLL 223

Query: 418 -----------------RDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
                            RD ++W T++ G   NG    AL ++ +M   G   D  T+ S
Sbjct: 224 RCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGS 283

Query: 461 ILNACGHAGLTNDGLVI 477
           IL ACG      +G  I
Sbjct: 284 ILTACGALAALEEGKQI 300


>gi|116310930|emb|CAH67868.1| B0403H10-OSIGBa0105A11.20 [Oryza sativa Indica Group]
          Length = 804

 Score =  240 bits (613), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 163/554 (29%), Positives = 285/554 (51%), Gaps = 47/554 (8%)

Query: 16  FKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMV 75
           ++  ++     LFD +P++NVVSW+ +   Y   G  +++++ F  M+  G  P   + V
Sbjct: 158 YREARVDVVRRLFDAMPKRNVVSWNTLFGWYVKTGRPQEALELFVRMLEDGFRPTPVSFV 217

Query: 76  GVLVAAAGLQNLELARSIHGLMVKFGLE--SDLF------------------------EG 109
            +  AA    +      ++GL+VK+G+E  +DLF                          
Sbjct: 218 NIFPAAVA-DDPSWPFQLYGLLVKYGVEYINDLFVVSSAIDMFSEFGDVQSARRVFDRAA 276

Query: 110 LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVP-NAVTMLTVIRGCVALGSRAL 168
            KN  +   N ++ G++ N  F +A+ LF+   GS  VP + VT L+ +         +L
Sbjct: 277 KKNTEV--WNTMITGYVQNGQFSEAIDLFSKILGSREVPLDVVTFLSALTAASQSQDVSL 334

Query: 169 CELIHGLTIK-LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
            + +HG  IK +   L V + N+++ MYS   ++  A  +F  +  KD+++W  M+  F+
Sbjct: 335 GQQLHGYLIKGMHRTLPVILGNALVVMYSRCGNVQTAFDLFDRLPEKDIVTWNTMVTAFI 394

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
             ++  + L +  EM+KS    D+V L  ++S ++  GDL+ GKQ H  ++  G++ E  
Sbjct: 395 QNDFDLEGLLLVYEMQKSGFAADSVTLTAVLSASSNTGDLQIGKQAHGYLIRHGIEGE-G 453

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQI--TEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           L + +I MY+K G ++ ++ VF+     ++  V+W A+I+GY Q+G   +A+  F  M +
Sbjct: 454 LESYLIDMYAKSGRVEMAQRVFDSFKNAKRDEVTWNAMIAGYTQSGQPEKAILVFRAMLE 513

Query: 346 EKTDSVDSITLVSILTASGELAA-LEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
              +   S+TL S+L A   +   +    Q+H  A          V   LI  YSKCG +
Sbjct: 514 AGLEPT-SVTLASVLPACDPVGGGVYSGKQIHCFAVRRCLDTNVFVGTALIDMYSKCGEI 572

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
             A  VF  M   +  V++ T+I G G +G G+ ALAL++ M E G  PD+ T+LS ++A
Sbjct: 573 TTAENVFGGMTG-KSTVTYTTMISGLGQHGFGKKALALFNSMQEKGLKPDAVTFLSAISA 631

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C ++GL ++GL ++  M +   +  + +H+ CV DLLA+AG + +A     + +EG+G  
Sbjct: 632 CNYSGLVDEGLALYRSM-DSFGISATPQHHCCVADLLAKAGRVEEAY----EFIEGLGEE 686

Query: 525 -----IWRALLSGC 533
                IW +LL+ C
Sbjct: 687 GNFVAIWGSLLASC 700



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 123/482 (25%), Positives = 224/482 (46%), Gaps = 44/482 (9%)

Query: 19  GKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLP-NSFTMVGV 77
           G ++ A  +FD   +KN   W+ +I GY  NG   +++  FS ++ S  +P +  T +  
Sbjct: 263 GDVQSARRVFDRAAKKNTEVWNTMITGYVQNGQFSEAIDLFSKILGSREVPLDVVTFLSA 322

Query: 78  LVAAAGLQNLELARSIHGLMVKFGLES------------------------DLFEGLKNP 113
           L AA+  Q++ L + +HG ++K G+                          DLF+ L   
Sbjct: 323 LTAASQSQDVSLGQQLHGYLIK-GMHRTLPVILGNALVVMYSRCGNVQTAFDLFDRLPEK 381

Query: 114 YLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIH 173
            +V+ N +V  FI N    + +LL    + SG   ++VT+  V+      G   + +  H
Sbjct: 382 DIVTWNTMVTAFIQNDFDLEGLLLVYEMQKSGFAADSVTLTAVLSASSNTGDLQIGKQAH 441

Query: 174 GLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME--CKDVISWTRMMGLFVDFEY 231
           G  I+ G I    + + ++DMY+    ++ A ++F   +   +D ++W  M+  +     
Sbjct: 442 GYLIRHG-IEGEGLESYLIDMYAKSGRVEMAQRVFDSFKNAKRDEVTWNAMIAGYTQSGQ 500

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISV-NAILGDLKRGKQLHAQVVLGGLQSELRLSN 290
              A+ +FR M ++ +   +V L +++   + + G +  GKQ+H   V   L + + +  
Sbjct: 501 PEKAILVFRAMLEAGLEPTSVTLASVLPACDPVGGGVYSGKQIHCFAVRRCLDTNVFVGT 560

Query: 291 SIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDS 350
           ++I MYSKCG++ ++ +VF  +T KS V++T +ISG  Q+G  ++AL  F  M QEK   
Sbjct: 561 ALIDMYSKCGEITTAENVFGGMTGKSTVTYTTMISGLGQHGFGKKALALFNSM-QEKGLK 619

Query: 351 VDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIV 410
            D++T +S ++A      ++  L L+      G         C+    +K G V+ AY  
Sbjct: 620 PDAVTFLSAISACNYSGLVDEGLALYRSMDSFGISATPQHHCCVADLLAKAGRVEEAYEF 679

Query: 411 FEEMGFLRDVVS-WNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAG 469
            E +G   + V+ W +++      G  E A  +  K+            L I    GHAG
Sbjct: 680 IEGLGEEGNFVAIWGSLLASCKAQGKQELAKLVTKKL------------LDIEKQYGHAG 727

Query: 470 LT 471
            +
Sbjct: 728 YS 729



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 116/443 (26%), Positives = 215/443 (48%), Gaps = 21/443 (4%)

Query: 106 LFEGL-KNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVP---NAVTMLTVIRGCV 161
           L E L + P  + CNA++  + +  L ++A+ L      +   P   +  T    +  C 
Sbjct: 57  LLEALPRPPPTLLCNALLIAYADRALQEEALRLNALLNHAARPPVRSDHYTYSAALTACA 116

Query: 162 ALGSRALCELIHGLTIKLGLIL-DVSV-NNSVLDMYSCLMD-----LDAAIQIFREMECK 214
                 L   +H   ++    L D +V  NS+L++Y+  +      +D   ++F  M  +
Sbjct: 117 RSRRLRLGRSVHAHMLRRARSLPDTAVLRNSLLNLYASSVRYREARVDVVRRLFDAMPKR 176

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
           +V+SW  + G +V      +AL++F  M +       V+ +N+    A+  D     QL+
Sbjct: 177 NVVSWNTLFGWYVKTGRPQEALELFVRMLEDGFRPTPVSFVNIFPA-AVADDPSWPFQLY 235

Query: 275 AQVVLGGLQ--SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC 332
             +V  G++  ++L + +S I M+S+ GD+ S+R VF++  +K+   W  +I+GYVQNG 
Sbjct: 236 GLLVKYGVEYINDLFVVSSAIDMFSEFGDVQSARRVFDRAAKKNTEVWNTMITGYVQNGQ 295

Query: 333 AREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV-- 390
             EA++ F K+   +   +D +T +S LTA+ +   + +  QLHG   + G  R   V  
Sbjct: 296 FSEAIDLFSKILGSREVPLDVVTFLSALTAASQSQDVSLGQQLHGYLIK-GMHRTLPVIL 354

Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
            N L+  YS+CGNV  A+ +F+ +   +D+V+WNT++  +  N      L L ++M ++G
Sbjct: 355 GNALVVMYSRCGNVQTAFDLFDRLP-EKDIVTWNTMVTAFIQNDFDLEGLLLVYEMQKSG 413

Query: 451 EVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
              DS T  ++L+A  + G    G      +I         E Y  ++D+ A++G +  A
Sbjct: 414 FAADSVTLTAVLSASSNTGDLQIGKQAHGYLIRHGIEGEGLESY--LIDMYAKSGRVEMA 471

Query: 511 SGLAGKLLEGMGPNI-WRALLSG 532
             +           + W A+++G
Sbjct: 472 QRVFDSFKNAKRDEVTWNAMIAG 494



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 96/432 (22%), Positives = 195/432 (45%), Gaps = 35/432 (8%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTM 74
           Y + G ++ A +LFD +PEK++V+W+ ++  +  N F  + +     M  SG   +S T+
Sbjct: 362 YSRCGNVQTAFDLFDRLPEKDIVTWNTMVTAFIQNDFDLEGLLLVYEMQKSGFAADSVTL 421

Query: 75  VGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------LFEGLKNP 113
             VL A++   +L++ +  HG +++ G+E +                     +F+  KN 
Sbjct: 422 TAVLSASSNTGDLQIGKQAHGYLIRHGIEGEGLESYLIDMYAKSGRVEMAQRVFDSFKNA 481

Query: 114 YL--VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALC-E 170
               V+ NA++AG+  +   ++A+L+F     +GL P +VT+ +V+  C  +G      +
Sbjct: 482 KRDEVTWNAMIAGYTQSGQPEKAILVFRAMLEAGLEPTSVTLASVLPACDPVGGGVYSGK 541

Query: 171 LIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFE 230
            IH   ++  L  +V V  +++DMYS   ++  A  +F  M  K  +++T M+       
Sbjct: 542 QIHCFAVRRCLDTNVFVGTALIDMYSKCGEITTAENVFGGMTGKSTVTYTTMISGLGQHG 601

Query: 231 YAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSN 290
           +   AL +F  M++  +  D V  L+ IS     G +  G  L+  +   G+ +  +   
Sbjct: 602 FGKKALALFNSMQEKGLKPDAVTFLSAISACNYSGLVDEGLALYRSMDSFGISATPQHHC 661

Query: 291 SIIAMYSKCGDLDSSRSVFNQITEKS--LVSWTAIISGYVQNG---CAREALNQFIKMRQ 345
            +  + +K G ++ +      + E+   +  W ++++     G    A+    + + + +
Sbjct: 662 CVADLLAKAGRVEEAYEFIEGLGEEGNFVAIWGSLLASCKAQGKQELAKLVTKKLLDIEK 721

Query: 346 EKTDSVDSITLVSILTASGEL---AALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
           +   +  S+ L  +L A        +L   ++  G+  EAG   +  VQN  +    K  
Sbjct: 722 QYGHAGYSVLLSQVLAAESNWNSADSLRKEMRARGLKKEAG-SSWIKVQNAALE--HKFI 778

Query: 403 NVDLAYIVFEEM 414
             D  Y+  E M
Sbjct: 779 EKDQNYVENEHM 790


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  240 bits (613), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 161/577 (27%), Positives = 269/577 (46%), Gaps = 86/577 (14%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           LL+ Y KSG++  A  +FDE+P+                                   PN
Sbjct: 54  LLTAYAKSGRLARARRVFDEMPD-----------------------------------PN 78

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKL 130
            FT   +L A A           H  +V   +E  LF  +     VS NA++ GF +   
Sbjct: 79  LFTRNALLSALA-----------HSRLVP-DMER-LFASMPERDAVSYNALITGFSSTGS 125

Query: 131 FQQAVLLFN-FFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNN 189
             ++V L+    R   + P  +T+  +I    AL  RAL   +H   ++LG      V +
Sbjct: 126 PARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGS 185

Query: 190 SVLDMYSCLMDLDAAIQIFREMECK-------------------------------DVIS 218
            ++DMY+ +  +  A ++F+EME K                               D I+
Sbjct: 186 PLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSIT 245

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           WT M+          +AL +FR MR   +  D     ++++    L  L+ GKQ+HA + 
Sbjct: 246 WTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYIT 305

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
               +  + + ++++ MYSKC  +  + +VF ++T ++++SWTA+I GY QN C+ EA+ 
Sbjct: 306 RTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVR 365

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
            F +M+ +     D  TL S++++   LA+LE   Q H +A  +G  RY +V N L++ Y
Sbjct: 366 AFSEMQMDGIKP-DDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLY 424

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
            KCG+++ A+ +F+EM F  D VSW  ++ GY   G  +  + L+ KM   G  PD  T+
Sbjct: 425 GKCGSIEDAHRLFDEMSF-HDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTF 483

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
           + +L+AC  AGL   G   F+ M +++ + P  +HY C++DL +R+G   +A     ++ 
Sbjct: 484 IGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMP 543

Query: 519 EGMGPNIWRALLSGCVLH----VGRFQDAEALRSGSQ 551
                  W  LLS C L     +G++     L +  Q
Sbjct: 544 HSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQ 580



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 126/519 (24%), Positives = 232/519 (44%), Gaps = 59/519 (11%)

Query: 4   DP--YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           DP  +  + LLS    S  + + E LF  +PE++ VS++ +I G+S  G   +S++ +  
Sbjct: 76  DPNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRA 135

Query: 62  MML-SGLLPNSFTMVGVLVAAAGLQNLELARSIH-------------------GLMVKFG 101
           ++    + P   T+  +++ A+ L +  L  S+H                    +  K G
Sbjct: 136 LLREESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMG 195

Query: 102 LESD---LFEGLKNPYLVSCNAIVAGFINNK-------LFQ------------------- 132
           L  D   +F+ ++   +V  N ++ G +  K       LFQ                   
Sbjct: 196 LIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQ 255

Query: 133 -----QAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSV 187
                +A+ +F   R  G+  +  T  +++  C AL +    + IH    +     +V V
Sbjct: 256 NGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFV 315

Query: 188 NNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRI 247
            ++++DMYS    +  A  +FR M C+++ISWT M+  +     + +A++ F EM+   I
Sbjct: 316 GSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGI 375

Query: 248 ICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRS 307
             D   L ++IS  A L  L+ G Q H   ++ GL   + +SN+++ +Y KCG ++ +  
Sbjct: 376 KPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHR 435

Query: 308 VFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELA 367
           +F++++    VSWTA+++GY Q G A+E ++ F KM        D +T + +L+A     
Sbjct: 436 LFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKP-DGVTFIGVLSACSRAG 494

Query: 368 ALEI-CLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTI 426
            +E  C     +  + G         C+I  YS+ G    A    ++M    D   W T+
Sbjct: 495 LVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATL 554

Query: 427 IYGYGVNGHGETALALYHKMTETG-EVPDSSTYLSILNA 464
           +    + G+ E        + ET  + P S   L  ++A
Sbjct: 555 LSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHA 593



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 108/257 (42%), Gaps = 34/257 (13%)

Query: 251 TVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFN 310
           T  L +L++  A  G L R +++  ++        L   N++++  +    +     +F 
Sbjct: 48  TFLLNHLLTAYAKSGRLARARRVFDEMP----DPNLFTRNALLSALAHSRLVPDMERLFA 103

Query: 311 QITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALE 370
            + E+  VS+ A+I+G+   G    ++  +  + +E++     ITL +++  +  L+   
Sbjct: 104 SMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRA 163

Query: 371 ICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-------------GFL 417
           +   +H      GF  Y  V + L+  Y+K G +  A  VF+EM             G L
Sbjct: 164 LGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLL 223

Query: 418 -----------------RDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
                            RD ++W T++ G   NG    AL ++ +M   G   D  T+ S
Sbjct: 224 RCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGS 283

Query: 461 ILNACGHAGLTNDGLVI 477
           IL ACG      +G  I
Sbjct: 284 ILTACGALAALEEGKQI 300


>gi|356509887|ref|XP_003523674.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
           mitochondrial-like [Glycine max]
          Length = 750

 Score =  240 bits (613), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 165/557 (29%), Positives = 287/557 (51%), Gaps = 33/557 (5%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           ++S+  +S Y + G+++ A  +FDEIP+++VV+W+ +I G+  NG  EK ++   H  + 
Sbjct: 139 HSSASFVSLYSRCGRMELARKVFDEIPKRDVVAWTALIIGHVHNGEPEKGLRCLRH--VH 196

Query: 66  GLL-----PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES-------DLFEGLKNP 113
           G++     PN+ T  G  +A   L  +     +HG++VK G+ S       D++     P
Sbjct: 197 GVVEDDEKPNAKTWEGGFLACGNLGAVSEGSCLHGVVVKNGVASFIQSSVLDMYSKCGVP 256

Query: 114 Y-------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                         L+   +++  +    +  + + LF   + + + P+ V +  V+ G 
Sbjct: 257 REAYRSFCEVIHKDLLCWTSVIGVYARIGMMGECLRLFREMQENEIRPDGVVVGCVLSGF 316

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
                    +  HG+ I+   + D  VN+S+L MY     L  A +IF   +      W 
Sbjct: 317 GNSMDVFQGKAFHGVIIRRYYVDDEKVNDSLLFMYCKFGMLSLAERIFPLCQGSG-DGWN 375

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+  +         +++FREM+   I  +T+ + + I+  A LG +  G+ +H  V+ G
Sbjct: 376 FMVFGYGKVGENVKCVELFREMQWLGIHSETIGIASAIASCAQLGAVNLGRSIHCNVIKG 435

Query: 281 GLQSE-LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            L  + + ++NS++ MY KCG +  +  +FN  +E  +VSW  +IS +V      EA+N 
Sbjct: 436 FLDGKNISVTNSLVEMYGKCGKMTFAWRIFNT-SETDVVSWNTLISSHVHIKQHEEAVNL 494

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           F KM +E     ++ TLV +L+A   LA+LE   ++H    E+GF     +   LI  Y+
Sbjct: 495 FSKMVREDQKP-NTATLVVVLSACSHLASLEKGERVHCYINESGFTLNLPLGTALIDMYA 553

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           KCG +  + +VF+ M   +DV+ WN +I GYG+NG+ E+AL ++  M E+  +P+  T+L
Sbjct: 554 KCGQLQKSRMVFDSM-MEKDVICWNAMISGYGMNGYAESALEIFQHMEESNVMPNGITFL 612

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519
           S+L+AC HAGL  +G  +F +M +   V P+ +HY C+VDLL R G + +A  +   +  
Sbjct: 613 SLLSACAHAGLVEEGKYMFARM-KSYSVNPNLKHYTCMVDLLGRYGNVQEAEAMVLSMPI 671

Query: 520 GMGPNIWRALLSGCVLH 536
                +W ALL  C  H
Sbjct: 672 SPDGGVWGALLGHCKTH 688



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 140/552 (25%), Positives = 253/552 (45%), Gaps = 34/552 (6%)

Query: 6   YNSSKLLSNYFK-SGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML 64
           + +SKL+S Y   +        LF  +P K+   ++  +          + +  FSHM  
Sbjct: 40  FMASKLISLYDSLNNDPSSCSTLFHSLPSKDTFLYNSFLKSLFSRSLFPRVLSLFSHMRA 99

Query: 65  SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG-------------------LESD 105
           S L PN FT+  V+ AAA L  L    S+H L  K G                   L   
Sbjct: 100 SNLSPNHFTLPIVVSAAAHLTLLPHGASLHALASKTGLFHSSASFVSLYSRCGRMELARK 159

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRG---SGLVPNAVTMLTVIRGCVA 162
           +F+ +    +V+  A++ G ++N   ++ +       G       PNA T       C  
Sbjct: 160 VFDEIPKRDVVAWTALIIGHVHNGEPEKGLRCLRHVHGVVEDDEKPNAKTWEGGFLACGN 219

Query: 163 LGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
           LG+ +    +HG+ +K G+     + +SVLDMYS       A + F E+  KD++ WT +
Sbjct: 220 LGAVSEGSCLHGVVVKNGVA--SFIQSSVLDMYSKCGVPREAYRSFCEVIHKDLLCWTSV 277

Query: 223 MGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL 282
           +G++      G+ L++FREM+++ I  D V +  ++S      D+ +GK  H  ++    
Sbjct: 278 IGVYARIGMMGECLRLFREMQENEIRPDGVVVGCVLSGFGNSMDVFQGKAFHGVIIRRYY 337

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
             + ++++S++ MY K G L  +  +F  + + S   W  ++ GY + G   + +  F +
Sbjct: 338 VDDEKVNDSLLFMYCKFGMLSLAERIF-PLCQGSGDGWNFMVFGYGKVGENVKCVELFRE 396

Query: 343 MRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGF--PRYRSVQNCLISSYSK 400
           M+     S ++I + S + +  +L A+ +   +H    + GF   +  SV N L+  Y K
Sbjct: 397 MQWLGIHS-ETIGIASAIASCAQLGAVNLGRSIHCNVIK-GFLDGKNISVTNSLVEMYGK 454

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CG +  A+ +F       DVVSWNT+I  +      E A+ L+ KM    + P+++T + 
Sbjct: 455 CGKMTFAWRIFNTSE--TDVVSWNTLISSHVHIKQHEEAVNLFSKMVREDQKPNTATLVV 512

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           +L+AC H      G  + +  I E+    +      ++D+ A+ G L  +  +   ++E 
Sbjct: 513 VLSACSHLASLEKGERV-HCYINESGFTLNLPLGTALIDMYAKCGQLQKSRMVFDSMME- 570

Query: 521 MGPNIWRALLSG 532
                W A++SG
Sbjct: 571 KDVICWNAMISG 582



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 121/473 (25%), Positives = 209/473 (44%), Gaps = 53/473 (11%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           S +L  Y K G  +EA   F E+  K+++ W+ VI  Y+  G   + ++ F  M  + + 
Sbjct: 244 SSVLDMYSKCGVPREAYRSFCEVIHKDLLCWTSVIGVYARIGMMGECLRLFREMQENEIR 303

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMV-------------------KFGLES----- 104
           P+   +  VL       ++   ++ HG+++                   KFG+ S     
Sbjct: 304 PDGVVVGCVLSGFGNSMDVFQGKAFHGVIIRRYYVDDEKVNDSLLFMYCKFGMLSLAERI 363

Query: 105 -DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
             L +G  + +    N +V G+       + V LF   +  G+    + + + I  C  L
Sbjct: 364 FPLCQGSGDGW----NFMVFGYGKVGENVKCVELFREMQWLGIHSETIGIASAIASCAQL 419

Query: 164 GSRALCELIHGLTIKLGLI--LDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
           G+  L   IH   IK G +   ++SV NS+++MY     +  A +IF   E  DV+SW  
Sbjct: 420 GAVNLGRSIHCNVIK-GFLDGKNISVTNSLVEMYGKCGKMTFAWRIFNTSE-TDVVSWNT 477

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++   V  +   +A+ +F +M +     +T  L+ ++S  + L  L++G+++H  +   G
Sbjct: 478 LISSHVHIKQHEEAVNLFSKMVREDQKPNTATLVVVLSACSHLASLEKGERVHCYINESG 537

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
               L L  ++I MY+KCG L  SR VF+ + EK ++ W A+ISGY  NG A  AL  F 
Sbjct: 538 FTLNLPLGTALIDMYAKCGQLQKSRMVFDSMMEKDVICWNAMISGYGMNGYAESALEIFQ 597

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALE----ICLQLHGIAFEAGFPRYRSVQNCLISS 397
            M +E     + IT +S+L+A      +E    +  ++   +       Y     C++  
Sbjct: 598 HM-EESNVMPNGITFLSLLSACAHAGLVEEGKYMFARMKSYSVNPNLKHY----TCMVDL 652

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
             + GNV  A  +   M    D   W  ++      GH +T     H   E G
Sbjct: 653 LGRYGNVQEAEAMVLSMPISPDGGVWGALL------GHCKT-----HNQIEMG 694


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  240 bits (613), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 139/434 (32%), Positives = 235/434 (54%), Gaps = 7/434 (1%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           LF+ +    LVS  A+++G   N  F +A+  F   R  G VP      + IR C +LGS
Sbjct: 62  LFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGS 121

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
             + + +H L +K G+  ++ V +++ DMYS    +  A ++F EM CKD +SWT M+  
Sbjct: 122 IEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDG 181

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +       +AL  F++M    +  D   L + +     L   K G+ +H+ VV  G +S+
Sbjct: 182 YSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESD 241

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITE-KSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           + + N++  MYSK GD++S+ +VF   +E +++VS+T +I GYV+     + L+ F+++R
Sbjct: 242 IFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELR 301

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
           ++  +  +  T  S++ A    AALE   QLH    +  F     V + L+  Y KCG +
Sbjct: 302 RQGIEP-NEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLL 360

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           + A   F+E+G   + ++WN+++  +G +G G+ A+  + +M + G  P++ T++S+L  
Sbjct: 361 EHAIQAFDEIGDPTE-IAWNSLVSVFGQHGLGKDAIKFFERMVDRGVKPNAITFISLLTG 419

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C HAGL  +GL  F  M +   V P +EHY CV+DLL RAG L +A     ++     PN
Sbjct: 420 CSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRM--PFEPN 477

Query: 525 I--WRALLSGCVLH 536
              W + L  C +H
Sbjct: 478 AFGWCSFLGACRIH 491



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 120/461 (26%), Positives = 228/461 (49%), Gaps = 27/461 (5%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           PC   + ++ L++ Y K G++  A  LFD +P++N+VSW+ +I G S N    ++++ F 
Sbjct: 38  PCT--FLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFC 95

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPY---- 114
            M + G +P  F     + A A L ++E+ + +H L +KFG+ S+LF G  L++ Y    
Sbjct: 96  GMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCG 155

Query: 115 ----------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                            VS  A++ G+     F++A+L F       +  +   + + + 
Sbjct: 156 AMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLG 215

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFR-EMECKDVI 217
            C AL +      +H   +KLG   D+ V N++ DMYS   D+++A  +F  + EC++V+
Sbjct: 216 ACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVV 275

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           S+T ++  +V+ E     L +F E+R+  I  +     +LI   A    L++G QLHAQV
Sbjct: 276 SYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQV 335

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           +      +  +S+ ++ MY KCG L+ +   F++I + + ++W +++S + Q+G  ++A+
Sbjct: 336 MKINFDEDPFVSSILVDMYGKCGLLEHAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAI 395

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQ-LHGIAFEAGFPRYRSVQNCLIS 396
             F +M  ++    ++IT +S+LT       +E  L   + +    G        +C+I 
Sbjct: 396 KFFERM-VDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVID 454

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGE 437
              + G +  A      M F  +   W + +    ++G  E
Sbjct: 455 LLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKE 495



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 103/341 (30%), Positives = 169/341 (49%), Gaps = 6/341 (1%)

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           +H L I  G      + N +++MYS   +LD A+++F  M  ++++SWT M+        
Sbjct: 27  LHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQNSK 86

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
             +A++ F  MR    +    A  + I   A LG ++ GKQ+H   +  G+ SEL + ++
Sbjct: 87  FSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSN 146

Query: 292 IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
           +  MYSKCG +  +  VF ++  K  VSWTA+I GY + G   EAL  F KM  E+  ++
Sbjct: 147 LEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEV-TI 205

Query: 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVF 411
           D   L S L A G L A +    +H    + GF     V N L   YSK G+++ A  VF
Sbjct: 206 DQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVF 265

Query: 412 EEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLT 471
                 R+VVS+  +I GY      E  L+++ ++   G  P+  T+ S++ AC +    
Sbjct: 266 GIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAAL 325

Query: 472 NDGLVIFNQMIEENKVKPSQEHY--GCVVDLLARAGCLSDA 510
             G  +  Q++   K+   ++ +    +VD+  + G L  A
Sbjct: 326 EQGTQLHAQVM---KINFDEDPFVSSILVDMYGKCGLLEHA 363



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 82/217 (37%), Positives = 114/217 (52%), Gaps = 2/217 (0%)

Query: 250 DTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVF 309
           DT AL ++I   A    L+RGKQLHA ++  G      L+N ++ MYSKCG+LD +  +F
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 310 NQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAAL 369
           + + +++LVSWTA+ISG  QN    EA+  F  MR    +        S + A   L ++
Sbjct: 64  DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRI-CGEVPTQFAFSSAIRACASLGSI 122

Query: 370 EICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYG 429
           E+  Q+H +A + G      V + L   YSKCG +  A  VFEEM   +D VSW  +I G
Sbjct: 123 EMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMP-CKDEVSWTAMIDG 181

Query: 430 YGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           Y   G  E AL  + KM +     D     S L ACG
Sbjct: 182 YSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACG 218


>gi|147805932|emb|CAN74403.1| hypothetical protein VITISV_043633 [Vitis vinifera]
          Length = 841

 Score =  240 bits (612), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 162/619 (26%), Positives = 297/619 (47%), Gaps = 82/619 (13%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           +P+ ++ L+  Y +   ++    LFD +  +N+VSW+ +I GY   G + K+++ F  M+
Sbjct: 196 NPHVATALIGFYLRF-DMRVLPLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQML 254

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------- 106
           +  +  +  TM+  + A A L +L+L + IH L +KF    DL                 
Sbjct: 255 VDEVKFDCVTMLVAVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLE 314

Query: 107 -----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                FE + N      N++++ +      ++A+ LF   +  G+  +  T++ ++  C 
Sbjct: 315 SSHQLFESVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCE 374

Query: 162 ALGSRALC-ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
            L S  L  + +H   IK G+ +D S+ N++L MY+ L  +++  +IF  M+  D+ISW 
Sbjct: 375 ELASGLLKGKSLHAHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWN 434

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+           A ++F  MR+S I  ++  ++++++    +  L  G+ +H  V+  
Sbjct: 435 TMILALARNTLRAQACELFERMRESEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMKH 494

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
            ++    L  ++  MY  CGD  ++R +F    ++ L+SW A+I     N          
Sbjct: 495 SIEINQPLRTALADMYMNCGDEATARDLFEGCPDRDLISWNAMIXKAEPN---------- 544

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPR--YRSVQNCLISSY 398
                       S+T++++L++   LA L     LH      GF      S+ N  I+ Y
Sbjct: 545 ------------SVTIINVLSSFTHLATLPQGQSLHAYVTRRGFSLGLDLSLANAFITMY 592

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
           ++CG++  A  +F+ +   R+++SWN +I GYG+NG G  A+  + +M E G  P+  T+
Sbjct: 593 ARCGSLQSAENIFKTLP-KRNIISWNAMIAGYGMNGRGSDAMLAFSQMLEDGFRPNGVTF 651

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
           +S+L+AC H+G    GL +F+ M+++  V P   HY C+VDLLAR GC+ +A      + 
Sbjct: 652 VSVLSACSHSGFIEMGLQLFHSMVQDFNVTPELVHYSCIVDLLARGGCIDEAREFIDSMP 711

Query: 519 EGMGPNIWRALLSGCVLH---------------------------------VGRFQDAEA 545
                ++WRALLS C  +                                  G + +   
Sbjct: 712 IEPDASVWRALLSSCRAYSDAKQAKTIFEKLDKLEPMNAGNYVLLSNVYATAGLWLEVRR 771

Query: 546 LRSGSQKKGIIKIPGISFL 564
           +R+  ++KG+ K PGIS++
Sbjct: 772 IRTWLKEKGLRKPPGISWI 790



 Score =  181 bits (459), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 146/576 (25%), Positives = 269/576 (46%), Gaps = 52/576 (9%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTM 74
           Y K G +++A  +FD + +++VV W+ +++GY   G +E++M     M    L PNS TM
Sbjct: 105 YCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVGWGCYEEAMLLVREMGRENLRPNSRTM 164

Query: 75  VGVLVAAAGLQNLELARSIHGL----------------MVKFGLESD------LFEGLKN 112
           V +L+A  G   L L R +HG                 ++ F L  D      LF+ +  
Sbjct: 165 VALLLACEGASELRLGRGVHGYCLRNGMFDSNPHVATALIGFYLRFDMRVLPLLFDLMVV 224

Query: 113 PYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELI 172
             +VS NA+++G+ +   + +A+ LF       +  + VTML  ++ C  LGS  L + I
Sbjct: 225 RNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELGSLKLGKQI 284

Query: 173 HGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYA 232
           H L IK   + D+ + N++L+MYS    L+++ Q+F  +  +D   W  M+  +  F   
Sbjct: 285 HQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVPNRDAPLWNSMISAYAAFGCH 344

Query: 233 GDALKIFREMRKSRIICDTVALLNLISV-NAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
            +A+ +F  M+   +  D   ++ ++S+   +   L +GK LHA V+  G++ +  L N+
Sbjct: 345 EEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKSLHAHVIKSGMRIDASLGNA 404

Query: 292 IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
           +++MY++   ++S + +F+++    ++SW  +I    +N    +A   F +MR+ +    
Sbjct: 405 LLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRAQACELFERMRESEIKP- 463

Query: 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVF 411
           +S T++SIL A  ++  L+    +HG   +      + ++  L   Y  CG+   A  +F
Sbjct: 464 NSYTIISILAACEDVTCLDFGRSIHGYVMKHSIEINQPLRTALADMYMNCGDEATARDLF 523

Query: 412 EEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLT 471
           E     RD++SWN +I     N    T + +    T    +P   +         HA +T
Sbjct: 524 EGCPD-RDLISWNAMIXKAEPN--SVTIINVLSSFTHLATLPQGQSL--------HAYVT 572

Query: 472 NDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLS 531
             G  +   +   N            + + AR G L  A  +  K L       W A+++
Sbjct: 573 RRGFSLGLDLSLAN----------AFITMYARCGSLQSAENIF-KTLPKRNIISWNAMIA 621

Query: 532 GCVLHVGRFQDA-----EALRSGSQKKGIIKIPGIS 562
           G  ++ GR  DA     + L  G +  G+  +  +S
Sbjct: 622 GYGMN-GRGSDAMLAFSQMLEDGFRPNGVTFVSVLS 656



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 126/459 (27%), Positives = 214/459 (46%), Gaps = 25/459 (5%)

Query: 30  EIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLEL 89
           +I  K+   W+ VI   +     +  + A++ M   G+LPN+ T+  VL A A    +E 
Sbjct: 19  KIQIKDPKHWNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVER 78

Query: 90  ARSIH-------------------GLMVKFGLESD---LFEGLKNPYLVSCNAIVAGFIN 127
            +SIH                       K G   D   +F+ + +  +V  NA+V G++ 
Sbjct: 79  GKSIHRSIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVG 138

Query: 128 NKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSV 187
              +++A+LL        L PN+ TM+ ++  C       L   +HG  ++ G+      
Sbjct: 139 WGCYEEAMLLVREMGRENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPH 198

Query: 188 NNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRI 247
             + L  +    D+     +F  M  ++++SW  M+  + D      AL++F +M    +
Sbjct: 199 VATALIGFYLRFDMRVLPLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEV 258

Query: 248 ICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRS 307
             D V +L  +   A LG LK GKQ+H   +      +L + N+++ MYS  G L+SS  
Sbjct: 259 KFDCVTMLVAVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQ 318

Query: 308 VFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELA 367
           +F  +  +    W ++IS Y   GC  EA++ FI+M+ E     D  T+V +L+   ELA
Sbjct: 319 LFESVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKK-DERTVVIMLSMCEELA 377

Query: 368 A-LEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTI 426
           + L     LH    ++G     S+ N L+S Y++   V+    +F+ M  + D++SWNT+
Sbjct: 378 SGLLKGKSLHAHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFDRMKGV-DIISWNTM 436

Query: 427 IYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
           I     N     A  L+ +M E+   P+S T +SIL AC
Sbjct: 437 ILALARNTLRAQACELFERMRESEIKPNSYTIISILAAC 475



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 91/390 (23%), Positives = 176/390 (45%), Gaps = 47/390 (12%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           ID    + LLS Y +   ++  + +FD +   +++SW+ +I   + N    ++ + F  M
Sbjct: 397 IDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRAQACELFERM 456

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE------------------- 103
             S + PNS+T++ +L A   +  L+  RSIHG ++K  +E                   
Sbjct: 457 RESEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMKHSIEINQPLRTALADMYMNCGDE 516

Query: 104 ---SDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
               DLFEG  +  L+S NA++                         PN+VT++ V+   
Sbjct: 517 ATARDLFEGCPDRDLISWNAMIX---------------------KAEPNSVTIINVLSSF 555

Query: 161 VALGSRALCELIHGLTIKLG--LILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
             L +    + +H    + G  L LD+S+ N+ + MY+    L +A  IF+ +  +++IS
Sbjct: 556 THLATLPQGQSLHAYVTRRGFSLGLDLSLANAFITMYARCGSLQSAENIFKTLPKRNIIS 615

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQL-HAQV 277
           W  M+  +       DA+  F +M +     + V  ++++S  +  G ++ G QL H+ V
Sbjct: 616 WNAMIAGYGMNGRGSDAMLAFSQMLEDGFRPNGVTFVSVLSACSHSGFIEMGLQLFHSMV 675

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISGYVQNGCAREA 336
               +  EL   + I+ + ++ G +D +R   + +  E     W A++S       A++A
Sbjct: 676 QDFNVTPELVHYSCIVDLLARGGCIDEAREFIDSMPIEPDASVWRALLSSCRAYSDAKQA 735

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGEL 366
              F K+ + +  +  +  L+S + A+  L
Sbjct: 736 KTIFEKLDKLEPMNAGNYVLLSNVYATAGL 765



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 126/261 (48%), Gaps = 4/261 (1%)

Query: 210 EMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKR 269
           +++ KD   W  ++    + +     L  + +M    ++ +   L  ++   A    ++R
Sbjct: 19  KIQIKDPKHWNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVER 78

Query: 270 GKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQ 329
           GK +H  +    L  ++R+  +++  Y KCG ++ +R VF+ ++++ +V W A++ GYV 
Sbjct: 79  GKSIHRSIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVG 138

Query: 330 NGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG-FPRYR 388
            GC  EA+    +M +E     +S T+V++L A    + L +   +HG     G F    
Sbjct: 139 WGCYEEAMLLVREMGRENLRP-NSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNP 197

Query: 389 SVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTE 448
            V   LI  Y +  ++ +  ++F+ M  +R++VSWN +I GY   G    AL L+ +M  
Sbjct: 198 HVATALIGFYLRF-DMRVLPLLFDLM-VVRNIVSWNAMISGYYDVGDYFKALELFVQMLV 255

Query: 449 TGEVPDSSTYLSILNACGHAG 469
                D  T L  + AC   G
Sbjct: 256 DEVKFDCVTMLVAVQACAELG 276


>gi|356507622|ref|XP_003522563.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g26540-like [Glycine max]
          Length = 698

 Score =  240 bits (612), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 163/550 (29%), Positives = 260/550 (47%), Gaps = 58/550 (10%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           ++ +  Y K   +++A  LFDE+P+ +  SW+ +I  YS  GF  ++   F  M  SG  
Sbjct: 101 NRAIEAYAKCHCLRDARELFDEMPQPDGGSWNALITAYSQLGFPNETFSLFLCMTRSGFF 160

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL----------------------ESDL 106
           P   T   VL + A    L L++ +HGL+ KFG                          +
Sbjct: 161 PTEVTFASVLASCAASSELLLSKQVHGLVTKFGFCGNVILGSSLVDVYGKCGVMADARRM 220

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFN-FFRGSGLVPNAVTMLTVIRGCVALGS 165
           F  +  P  V+ N IV  +++    ++AV +F+  F  S + P   T    +  C ++ +
Sbjct: 221 FHEIPQPNAVTWNVIVRRYLDAGDAKEAVFMFSRMFSTSAVRPMNFTFSNALVACSSVSA 280

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
                 IHG+ +KLGL  D  V++S+++MY     L+   Q+F ++  +D++ WT ++  
Sbjct: 281 LREGVQIHGVVVKLGLREDNVVSSSLVNMYVKCGRLEDGFQVFDQLGFRDLVCWTSIVSG 340

Query: 226 FVDFEYAGDALKIFREMRKSRII-------------------------------CDTVAL 254
           +       +A + F EM +  +I                                D V L
Sbjct: 341 YAMSGKTLEAREFFDEMPERNVISWNAMLAGYTQCSEWSKALDFVYLMLDVIKDVDHVTL 400

Query: 255 LNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE 314
             L++V+A + D + GKQ+H  +   G  S+LRLSN+++ MY KCG+L+S+R  FNQ+++
Sbjct: 401 GLLLNVSAGISDHEMGKQVHGYIYRHGFHSDLRLSNALLDMYGKCGNLNSTRVWFNQMSD 460

Query: 315 K-SLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICL 373
           +   VSW A+++ Y Q+  + +AL  F KM+ E   +    T V++L A      L +  
Sbjct: 461 RRDRVSWNALLASYGQHQLSEQALTMFSKMQWETKPT--QYTFVTLLLACANTFTLCLGK 518

Query: 374 QLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVN 433
           Q+HG     GF      +  L+  Y KC  ++ A  V +     RDV+ WNTII G   N
Sbjct: 519 QIHGFMIRHGFHIDTVTRTALVYMYCKCRCLEYAIEVLKR-AVSRDVIIWNTIIMGCVHN 577

Query: 434 GHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEH 493
             G+ AL L+  M   G  PD  T+  IL AC   GL   G   F  M  E  V P  EH
Sbjct: 578 HKGKEALELFVIMEAEGIKPDHVTFKGILLACIEEGLVEFGTGCFKSMSSEFHVLPRMEH 637

Query: 494 YGCVVDLLAR 503
           Y C+++L +R
Sbjct: 638 YDCMIELYSR 647



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 129/493 (26%), Positives = 223/493 (45%), Gaps = 58/493 (11%)

Query: 14  NYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHE---KSMKAFSHMMLSGLLPN 70
            Y K+G+I++A ++    P+     +S+    + +   H    ++ K  SH++     P 
Sbjct: 39  TYLKAGRIRKATSILFAFPKP--FPFSLYALFFRLCSSHRAVVEARKVESHLLTFSPNPP 96

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKL 130
           +F +   + A A    L  AR             +LF+ +  P   S NA++  +     
Sbjct: 97  TFLLNRAIEAYAKCHCLRDAR-------------ELFDEMPQPDGGSWNALITAYSQLGF 143

Query: 131 FQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNS 190
             +   LF     SG  P  VT  +V+  C A     L + +HGL  K G   +V + +S
Sbjct: 144 PNETFSLFLCMTRSGFFPTEVTFASVLASCAASSELLLSKQVHGLVTKFGFCGNVILGSS 203

Query: 191 VLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICD 250
           ++D+Y     +  A ++F E+   + ++W  ++  ++D   A +A+ +F  M  +     
Sbjct: 204 LVDVYGKCGVMADARRMFHEIPQPNAVTWNVIVRRYLDAGDAKEAVFMFSRMFST----S 259

Query: 251 TVALLNLISVNAILG-----DLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSS 305
            V  +N    NA++       L+ G Q+H  VV  GL+ +  +S+S++ MY KCG L+  
Sbjct: 260 AVRPMNFTFSNALVACSSVSALREGVQIHGVVVKLGLREDNVVSSSLVNMYVKCGRLEDG 319

Query: 306 RSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDS--------------- 350
             VF+Q+  + LV WT+I+SGY  +G   EA   F +M +    S               
Sbjct: 320 FQVFDQLGFRDLVCWTSIVSGYAMSGKTLEAREFFDEMPERNVISWNAMLAGYTQCSEWS 379

Query: 351 ---------------VDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLI 395
                          VD +TL  +L  S  ++  E+  Q+HG  +  GF     + N L+
Sbjct: 380 KALDFVYLMLDVIKDVDHVTLGLLLNVSAGISDHEMGKQVHGYIYRHGFHSDLRLSNALL 439

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
             Y KCGN++   + F +M   RD VSWN ++  YG +   E AL ++ KM    + P  
Sbjct: 440 DMYGKCGNLNSTRVWFNQMSDRRDRVSWNALLASYGQHQLSEQALTMFSKMQWETK-PTQ 498

Query: 456 STYLSILNACGHA 468
            T++++L AC + 
Sbjct: 499 YTFVTLLLACANT 511



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 88/402 (21%), Positives = 169/402 (42%), Gaps = 77/402 (19%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM----- 62
           SS L++ Y K G++++   +FD++  +++V W+ ++ GY+++G   ++ + F  M     
Sbjct: 303 SSSLVNMYVKCGRLEDGFQVFDQLGFRDLVCWTSIVSGYAMSGKTLEAREFFDEMPERNV 362

Query: 63  -----MLSGLLPNS---------FTMVGV------------LVAAAGLQNLELARSIHGL 96
                ML+G    S         + M+ V            L  +AG+ + E+ + +HG 
Sbjct: 363 ISWNAMLAGYTQCSEWSKALDFVYLMLDVIKDVDHVTLGLLLNVSAGISDHEMGKQVHGY 422

Query: 97  MVKFGLESDLFEGLKNPYL-------------------------VSCNAIVAGFINNKLF 131
           + + G  SDL   L N  L                         VS NA++A +  ++L 
Sbjct: 423 IYRHGFHSDL--RLSNALLDMYGKCGNLNSTRVWFNQMSDRRDRVSWNALLASYGQHQLS 480

Query: 132 QQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSV 191
           +QA+ +F+  +     P   T +T++  C    +  L + IHG  I+ G  +D     ++
Sbjct: 481 EQALTMFSKMQWET-KPTQYTFVTLLLACANTFTLCLGKQIHGFMIRHGFHIDTVTRTAL 539

Query: 192 LDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDT 251
           + MY     L+ AI++ +    +DVI W  ++   V      +AL++F  M    I  D 
Sbjct: 540 VYMYCKCRCLEYAIEVLKRAVSRDVIIWNTIIMGCVHNHKGKEALELFVIMEAEGIKPDH 599

Query: 252 VALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL------SNSIIAMYSKCGDLDSS 305
           V    +     +L  ++ G           + SE  +       + +I +YS+   +D  
Sbjct: 600 VTFKGI-----LLACIEEGLVEFGTGCFKSMSSEFHVLPRMEHYDCMIELYSRHRYMDEL 654

Query: 306 RSVFNQIT-EKSLVSWTAIISGYVQNGCAR------EALNQF 340
            +    +T E +L     ++    +N C R      E +N+F
Sbjct: 655 ENFMRTMTMEPTLPMLKRVLDVCQKNECPRLGEWIAEKINEF 696



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 108/228 (47%), Gaps = 14/228 (6%)

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
           L N  I  Y+KC  L  +R +F+++ +    SW A+I+ Y Q G   E  + F+ M +  
Sbjct: 99  LLNRAIEAYAKCHCLRDARELFDEMPQPDGGSWNALITAYSQLGFPNETFSLFLCMTRSG 158

Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
               + +T  S+L +    + L +  Q+HG+  + GF     + + L+  Y KCG +  A
Sbjct: 159 FFPTE-VTFASVLASCAASSELLLSKQVHGLVTKFGFCGNVILGSSLVDVYGKCGVMADA 217

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV-PDSSTYLSILNACG 466
             +F E+    + V+WN I+  Y   G  + A+ ++ +M  T  V P + T+ + L AC 
Sbjct: 218 RRMFHEIP-QPNAVTWNVIVRRYLDAGDAKEAVFMFSRMFSTSAVRPMNFTFSNALVACS 276

Query: 467 HAGLTNDGLVIFNQMI-----EENKVKPSQEHYGCVVDLLARAGCLSD 509
                 +G+ I   ++     E+N V  S      +V++  + G L D
Sbjct: 277 SVSALREGVQIHGVVVKLGLREDNVVSSS------LVNMYVKCGRLED 318


>gi|255565109|ref|XP_002523547.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223537254|gb|EEF38886.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 555

 Score =  240 bits (612), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 154/494 (31%), Positives = 261/494 (52%), Gaps = 26/494 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + LL  Y  +G + +A+ +FDE+ E++VVSW+ ++  +S+NGF+ K++  F  M 
Sbjct: 44  DVFVGNTLLLFYGNTGYLSDAKKVFDEMLERDVVSWNTLLGAFSVNGFYLKALDLFYEMN 103

Query: 64  L-SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------- 106
           L SG  PN  T+V VL   A L++  +A  IH  +VK GL+S +                
Sbjct: 104 LRSGFRPNMVTVVSVLPVCAALEDEVVASEIHCYVVKIGLDSQVTLCNALVDVYGKCGNL 163

Query: 107 ------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                 F+ +     VS NAI+      +  + A+  F       + PN+VT+ +++   
Sbjct: 164 KSSRRVFDEMMERNEVSWNAIITSLAYMEHNKDALEAFRLMINEEVKPNSVTIASILPVL 223

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
           V L    L + IHG +++ G+  DV ++NS++DMY+       A  +F  M  K+V+SW 
Sbjct: 224 VELEHFDLGKEIHGFSLRFGIESDVFISNSLIDMYAKSGHSTQASVVFHLMTEKNVVSWN 283

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+  F    +   A+++ R+M+    I + V   N +   A +G L+ GK++HA+    
Sbjct: 284 AMVANFAQNRFELAAIELVRQMQTDGAIPNPVTFTNALPACARMGFLRPGKEIHARAFRM 343

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           G   +  +SN++  MY+KCG L+ +R+VFN I+ +  VS+  +I GY Q   + E+L+ F
Sbjct: 344 GCYFDQFVSNALTDMYAKCGFLNLARNVFN-ISLRDEVSYNILIVGYSQTTNSSESLSLF 402

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
           ++M     +  D ++ + ++ A   L AL+   ++H +        +  + N L+  Y+K
Sbjct: 403 LEMGLVGMER-DVVSYMGVIAACASLVALKQGEEIHALVVRKNLHMHIFIANSLLDFYTK 461

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CG +DLA  +F  +   +D  SWNTII G G+ G  E A+ L+  M E G   DS +Y++
Sbjct: 462 CGKIDLACKIFYRIS-EKDAASWNTIILGVGMLGELEAAINLFEAMREDGVEYDSVSYIA 520

Query: 461 ILNACGHAGLTNDG 474
           +L+AC H GL   G
Sbjct: 521 VLSACSHGGLVEKG 534



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 125/430 (29%), Positives = 216/430 (50%), Gaps = 30/430 (6%)

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG------------ 109
           M+ +G+ P+  T   VL A A   N++    IHG + K G + D+F G            
Sbjct: 1   MVRNGIRPDDHTFPFVLKACADNLNVQKGMEIHGCVFKLGFDFDVFVGNTLLLFYGNTGY 60

Query: 110 ----------LKNPYLVSCNAIVAGFINNKLFQQAV-LLFNFFRGSGLVPNAVTMLTVIR 158
                     +    +VS N ++  F  N  + +A+ L +     SG  PN VT+++V+ 
Sbjct: 61  LSDAKKVFDEMLERDVVSWNTLLGAFSVNGFYLKALDLFYEMNLRSGFRPNMVTVVSVLP 120

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C AL    +   IH   +K+GL   V++ N+++D+Y    +L ++ ++F EM  ++ +S
Sbjct: 121 VCAALEDEVVASEIHCYVVKIGLDSQVTLCNALVDVYGKCGNLKSSRRVFDEMMERNEVS 180

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           W  ++      E+  DAL+ FR M    +  ++V + +++ V   L     GK++H   +
Sbjct: 181 WNAIITSLAYMEHNKDALEAFRLMINEEVKPNSVTIASILPVLVELEHFDLGKEIHGFSL 240

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
             G++S++ +SNS+I MY+K G    +  VF+ +TEK++VSW A+++ + QN   R  L 
Sbjct: 241 RFGIESDVFISNSLIDMYAKSGHSTQASVVFHLMTEKNVVSWNAMVANFAQN---RFELA 297

Query: 339 QFIKMRQEKTDSV--DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
               +RQ +TD    + +T  + L A   +  L    ++H  AF  G    + V N L  
Sbjct: 298 AIELVRQMQTDGAIPNPVTFTNALPACARMGFLRPGKEIHARAFRMGCYFDQFVSNALTD 357

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
            Y+KCG ++LA  VF     LRD VS+N +I GY    +   +L+L+ +M   G   D  
Sbjct: 358 MYAKCGFLNLARNVFNIS--LRDEVSYNILIVGYSQTTNSSESLSLFLEMGLVGMERDVV 415

Query: 457 TYLSILNACG 466
           +Y+ ++ AC 
Sbjct: 416 SYMGVIAACA 425



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 146/312 (46%), Gaps = 28/312 (8%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + S+ L+  Y KSG   +A  +F  + EKNVVSW+ ++  ++ N F   +++    M 
Sbjct: 247 DVFISNSLIDMYAKSGHSTQASVVFHLMTEKNVVSWNAMVANFAQNRFELAAIELVRQMQ 306

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPYL------ 115
             G +PN  T    L A A +  L   + IH    + G   D F    L + Y       
Sbjct: 307 TDGAIPNPVTFTNALPACARMGFLRPGKEIHARAFRMGCYFDQFVSNALTDMYAKCGFLN 366

Query: 116 -------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA 162
                        VS N ++ G+       +++ LF      G+  + V+ + VI  C +
Sbjct: 367 LARNVFNISLRDEVSYNILIVGYSQTTNSSESLSLFLEMGLVGMERDVVSYMGVIAACAS 426

Query: 163 LGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
           L +    E IH L ++  L + + + NS+LD Y+    +D A +IF  +  KD  SW  +
Sbjct: 427 LVALKQGEEIHALVVRKNLHMHIFIANSLLDFYTKCGKIDLACKIFYRISEKDAASWNTI 486

Query: 223 M---GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA-QVV 278
           +   G+  + E    A+ +F  MR+  +  D+V+ + ++S  +  G +++GK+  A +++
Sbjct: 487 ILGVGMLGELE---AAINLFEAMREDGVEYDSVSYIAVLSACSHGGLVEKGKKYSACRIM 543

Query: 279 LGGLQSELRLSN 290
           +  L++ ++  +
Sbjct: 544 IKLLETAIQFED 555


>gi|125542314|gb|EAY88453.1| hypothetical protein OsI_09918 [Oryza sativa Indica Group]
          Length = 781

 Score =  240 bits (612), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 167/624 (26%), Positives = 297/624 (47%), Gaps = 60/624 (9%)

Query: 7   NSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSG 66
           +S  L+ +    G++ EA      +   +    +++I G++  G    ++ A+  M+  G
Sbjct: 43  SSKSLVVSLAAEGRMDEAVEALAAVRGPDAFLHNVMIRGFADAGLPAGALAAYRGMLEDG 102

Query: 67  LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL-------------------- 106
             P+ FT   V+   A L  L+  R+ HG+++K GLE D+                    
Sbjct: 103 ARPDRFTFPVVVKCCARLGGLDEGRAAHGMVIKLGLEHDVYTCNSLVAFYAKLGLVEDAE 162

Query: 107 --FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVP-NAVTMLTVIRGCVAL 163
             F+G+    +V+ N +V G+++N L   A+  F     +  V  ++V ++  +  C   
Sbjct: 163 RVFDGMPVRDIVTWNIMVDGYVSNGLGSLALACFQEMHDALEVQHDSVGIIAALAACCLE 222

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
            S    + IHG  I+ GL  D+ V  S+LDMY    ++  A  +F  M  + V++W  M+
Sbjct: 223 FSSMQGKEIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAYARSVFATMPLRTVVTWNCMI 282

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
           G +   E   +A   F +MR   +  + V  +NL++  A       G+ +H  VV     
Sbjct: 283 GGYALNERPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTESSLYGRSVHGYVVRRQFL 342

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
             + L  +++ MY K G ++SS  +F +I  K+LVSW  +I+ Y+      EA+  F+++
Sbjct: 343 PHVVLETALLEMYGKVGKVESSEKIFGKIANKTLVSWNNMIAAYMYKEMYTEAITLFLEL 402

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
             +     D  T+ +++ A   L +L  C Q+H      G+     + N ++  Y++ G+
Sbjct: 403 LNQPLYP-DYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAENTLIMNAVLHMYARSGD 461

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           V  +  +F++M   +DV+SWNT+I GY ++G G+TAL ++ +M   G  P+ ST++S+L 
Sbjct: 462 VVASREIFDKM-VSKDVISWNTMIMGYAIHGQGKTALEMFDEMKYNGLQPNESTFVSVLT 520

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
           AC  +GL ++G + FN M++E  + P  EHYGC+ DLL R G L +       +      
Sbjct: 521 ACSVSGLVDEGWMHFNLMLQEYGMIPQIEHYGCMTDLLGREGDLREVLQFIESMPIDPTS 580

Query: 524 NIWRALL--------------------------SGCVL-------HVGRFQDAEALRSGS 550
            +W +LL                          +GC +         GR++D E +R   
Sbjct: 581 RVWGSLLTASRNQNDIDIAEYAAERIFQLEHDNTGCYIVLSSMYADAGRWEDVERVRLLM 640

Query: 551 QKKGIIKIPGISF--LNSTSRDFG 572
           ++KG+ +   IS   L+ST+  F 
Sbjct: 641 KEKGLRRTEPISLVELHSTACSFA 664



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 97/385 (25%), Positives = 190/385 (49%), Gaps = 30/385 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + L++ Y K G +++AE +FD +P +++V+W+I++ GY  NG    ++  F  M 
Sbjct: 141 DVYTCNSLVAFYAKLGLVEDAERVFDGMPVRDIVTWNIMVDGYVSNGLGSLALACFQEM- 199

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELA----RSIHGLMVKFGLESDL------------- 106
               L      VG++ A A    LE +    + IHG +++ GLE D+             
Sbjct: 200 -HDALEVQHDSVGIIAALAAC-CLEFSSMQGKEIHGYVIRHGLEQDIKVGTSLLDMYCKC 257

Query: 107 ---------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
                    F  +    +V+ N ++ G+  N+   +A   F   R  GL    VT + ++
Sbjct: 258 GEVAYARSVFATMPLRTVVTWNCMIGGYALNERPDEAFDCFMQMRAEGLQVEVVTAINLL 317

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
             C    S      +HG  ++   +  V +  ++L+MY  +  ++++ +IF ++  K ++
Sbjct: 318 AACAQTESSLYGRSVHGYVVRRQFLPHVVLETALLEMYGKVGKVESSEKIFGKIANKTLV 377

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           SW  M+  ++  E   +A+ +F E+    +  D   +  ++    +LG L+  +Q+H+ +
Sbjct: 378 SWNNMIAAYMYKEMYTEAITLFLELLNQPLYPDYFTMSTVVPAFVLLGSLRHCRQIHSYI 437

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           +  G      + N+++ MY++ GD+ +SR +F+++  K ++SW  +I GY  +G  + AL
Sbjct: 438 IGLGYAENTLIMNAVLHMYARSGDVVASREIFDKMVSKDVISWNTMIMGYAIHGQGKTAL 497

Query: 338 NQFIKMRQEKTDSVDSITLVSILTA 362
             F +M+       +S T VS+LTA
Sbjct: 498 EMFDEMKYNGLQPNES-TFVSVLTA 521


>gi|302758642|ref|XP_002962744.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
 gi|300169605|gb|EFJ36207.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
          Length = 935

 Score =  240 bits (612), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 160/566 (28%), Positives = 275/566 (48%), Gaps = 48/566 (8%)

Query: 11  LLSNYFKSGKIKEAENLFDEIP---EKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           L+S Y K G + +A+  FD +P   +++VV+W+ +I  +  NG   ++++ F  M   G 
Sbjct: 182 LISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDRDGA 241

Query: 68  LP-NSFTMVGVL--VAAAGLQNLELARSIHGLMVKFGLESDLF----------------- 107
            P NS T V VL     AGL +LE  R+IHG +V  G+E + F                 
Sbjct: 242 PPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDD 301

Query: 108 -------EGLKNPY--LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                  +G + P   LV+C+A+++    N   Q+++ LF      G  P+ VT+++V+ 
Sbjct: 302 AWEVFLRKGDEEPSTSLVTCSAMISACWQNGWPQESLRLFFAMNLEGTKPSGVTLVSVLN 361

Query: 159 GCVAL--GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
            C  L  GS     L   + + +    D  +  ++L  Y+   DL  A   F  ++  DV
Sbjct: 362 ACSMLQVGSATAFVLEQAMEV-VSATRDNVLGTTLLTTYARSNDLPRARATFDAIQSPDV 420

Query: 217 ISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKR---GKQL 273
           +SW  M   ++    + +AL +F  M    +       +  ++  A          GK++
Sbjct: 421 VSWNAMAAAYLQHHRSREALVLFERMLLEGVRPSVATFITALTACAAYPPQTASAIGKRI 480

Query: 274 HAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT--EKSLVSWTAIISGYVQNG 331
            + +   GL+ +  ++N+ + MY+KCG L  +R+VF +I+   +  ++W ++++ Y  +G
Sbjct: 481 QSLLEEAGLEGDTAVANATLNMYAKCGSLADARAVFERISPARRDCITWNSMLAAYGHHG 540

Query: 332 CAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ 391
             +EA   F  M  EK    + +T V++L AS    ++    ++H      GF     +Q
Sbjct: 541 LGKEAFELFQAMEAEKLVKPNKVTFVAVLDASTSRTSIAQGREIHARVVSNGFESDTVIQ 600

Query: 392 NCLISSYSKCGNVDLAYIVFEEMGF-LRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
           N L++ Y+KCG++D A  +F++      DV++W ++I GY   G  E AL L+  M + G
Sbjct: 601 NALLNMYAKCGSLDDAQAIFDKSSSNQEDVIAWTSLIAGYAQYGQAERALKLFWTMQQQG 660

Query: 451 EVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
             P+  T++S L AC H G    G  + + M  ++ + P+ +H+ C+VDLL R G L +A
Sbjct: 661 VRPNHVTFISALTACNHGGKLEQGCELLSGMTPDHGILPASKHFSCIVDLLGRCGRLDEA 720

Query: 511 SGLAGKLLEGMGPN---IWRALLSGC 533
                KLLE         W ALL  C
Sbjct: 721 E----KLLERTSQADVITWMALLDAC 742



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 85/276 (30%), Positives = 147/276 (53%), Gaps = 11/276 (3%)

Query: 216 VISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
           V S T M+  +++      A+++F  M + R  C   AL+ L++  + LG+L  G+++H+
Sbjct: 109 VYSCTAMIRAWMEHGRPDKAMELFDRM-EVRPNCH--ALIALVNACSCLGNLAAGRRIHS 165

Query: 276 QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQI---TEKSLVSWTAIISGYVQNGC 332
           Q+     +    L N++I+MYSKCG L  ++  F+++   +++ +V+W A+IS +++NG 
Sbjct: 166 QISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAMISAFLRNGS 225

Query: 333 AREALNQFIKMRQEKTDSVDSITLVSILTASGE--LAALEICLQLHGIAFEAGFPRYRSV 390
           AREAL  F  M ++     +S+T VS+L +  E  L +LE    +HG    AG  R   V
Sbjct: 226 AREALQLFRDMDRDGAPPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVGAGIEREAFV 285

Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGFLR---DVVSWNTIIYGYGVNGHGETALALYHKMT 447
           +  L+ SY K G++D A+ VF   G       +V+ + +I     NG  + +L L+  M 
Sbjct: 286 RTALVDSYGKLGSLDDAWEVFLRKGDEEPSTSLVTCSAMISACWQNGWPQESLRLFFAMN 345

Query: 448 ETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIE 483
             G  P   T +S+LNAC    + +    +  Q +E
Sbjct: 346 LEGTKPSGVTLVSVLNACSMLQVGSATAFVLEQAME 381



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 115/471 (24%), Positives = 215/471 (45%), Gaps = 24/471 (5%)

Query: 117 SCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLT 176
           SC A++  ++ +    +A+ LF+      + PN   ++ ++  C  LG+ A    IH   
Sbjct: 111 SCTAMIRAWMEHGRPDKAMELFDRME---VRPNCHALIALVNACSCLGNLAAGRRIHSQI 167

Query: 177 IKLGLILDVSVNNSVLDMYS---CLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAG 233
                  +  + N+++ MYS    L+D   A         +DV++W  M+  F+    A 
Sbjct: 168 SDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAMISAFLRNGSAR 227

Query: 234 DALKIFREM-RKSRIICDTVALLNLIS--VNAILGDLKRGKQLHAQVVLGGLQSELRLSN 290
           +AL++FR+M R      ++V  ++++   V A L  L+  + +H ++V  G++ E  +  
Sbjct: 228 EALQLFRDMDRDGAPPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVGAGIEREAFVRT 287

Query: 291 SIIAMYSKCGDLDSSRSVF----NQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
           +++  Y K G LD +  VF    ++    SLV+ +A+IS   QNG  +E+L  F  M  E
Sbjct: 288 ALVDSYGKLGSLDDAWEVFLRKGDEEPSTSLVTCSAMISACWQNGWPQESLRLFFAMNLE 347

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFE-AGFPRYRSVQNCLISSYSKCGNVD 405
            T     +TLVS+L A   L        +   A E     R   +   L+++Y++  ++ 
Sbjct: 348 GTKP-SGVTLVSVLNACSMLQVGSATAFVLEQAMEVVSATRDNVLGTTLLTTYARSNDLP 406

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            A   F+ +    DVVSWN +   Y  +     AL L+ +M   G  P  +T+++ L AC
Sbjct: 407 RARATFDAIQS-PDVVSWNAMAAAYLQHHRSREALVLFERMLLEGVRPSVATFITALTAC 465

Query: 466 GHAGLTNDGLV--IFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
                     +      ++EE  ++         +++ A+ G L+DA  +  ++      
Sbjct: 466 AAYPPQTASAIGKRIQSLLEEAGLEGDTAVANATLNMYAKCGSLADARAVFERISPARRD 525

Query: 524 NI-WRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFL----NSTSR 569
            I W ++L+    H G  ++A  L    + + ++K   ++F+     STSR
Sbjct: 526 CITWNSMLAA-YGHHGLGKEAFELFQAMEAEKLVKPNKVTFVAVLDASTSR 575



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/212 (31%), Positives = 116/212 (54%), Gaps = 11/212 (5%)

Query: 264 LGDLKRGKQLHAQVVLG--GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWT 321
           L  LK+G++LHA ++     L +   L++ +I M++KCG+L  + ++ ++    S+ S T
Sbjct: 56  LRALKQGQRLHAHILSRRIDLHNHSFLASDLIVMHAKCGNLAEAEALADRFA--SVYSCT 113

Query: 322 AIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFE 381
           A+I  ++++G   +A+  F +M + + +    I LV+  +  G LAA     ++H    +
Sbjct: 114 AMIRAWMEHGRPDKAMELFDRM-EVRPNCHALIALVNACSCLGNLAAGR---RIHSQISD 169

Query: 382 AGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM--GFLRDVVSWNTIIYGYGVNGHGETA 439
             F     + N LIS YSKCG++  A   F+ +     RDVV+WN +I  +  NG    A
Sbjct: 170 RDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAMISAFLRNGSAREA 229

Query: 440 LALYHKMTETG-EVPDSSTYLSILNACGHAGL 470
           L L+  M   G   P+S T++S+L++C  AGL
Sbjct: 230 LQLFRDMDRDGAPPPNSVTFVSVLDSCVEAGL 261


>gi|449489376|ref|XP_004158293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g69350, mitochondrial-like
           [Cucumis sativus]
          Length = 804

 Score =  240 bits (612), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 164/557 (29%), Positives = 292/557 (52%), Gaps = 27/557 (4%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +DP  ++ LLS Y + G +  A  +F E+P +++VSWS +I     NG   + + AF  M
Sbjct: 132 MDPVVNTALLSVYGELGYLDSARKVFGEMPLRDLVSWSSIISSVVENGEINEGLDAFRCM 191

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
           +  G  P+S  ++ V+ A   L  L LA+S HG ++K G+E+D                 
Sbjct: 192 VSEGGTPDSVLVLTVVEACGELGVLRLAKSAHGYILKRGIENDRFVDSSLIFMYAKCGSL 251

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +FE +      +  A+++ +      ++A+ LF   + + + PN+VTM  ++R C
Sbjct: 252 RSAEIVFENVTYRSTSTWTAMISSYNLGGYLKEALALFVSMQKTEVEPNSVTMRIILRSC 311

Query: 161 VALGSRALCELIHGLTIKLGLILDVS-VNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
             L      + +H + IK  L  ++  +  ++L++Y+     D   +I  E+  + +  W
Sbjct: 312 TNLSLLREGKSVHCVVIKNDLDANLDCLGPTLLELYAATAKHDLCEKILHEIGGRGIAVW 371

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
             ++ ++       + + +F  M+K   + D+ +L + +S +   G+L+ G Q+H  V+ 
Sbjct: 372 NTLISVYAQKGLLKETVDLFVRMQKQGFMPDSFSLASSLSASGNEGELQLGLQIHGHVIK 431

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
                E  + NS+I MYSKCG +D +  +F+Q+  K +V+W ++ISG  QNG + +A++ 
Sbjct: 432 RPFMDEY-VFNSLINMYSKCGYVDLAYMIFDQMEPKGVVTWNSMISGLSQNGYSTKAISL 490

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           F  M       +  +  VS++ A   L  LE    +H      G  +   ++  L+  Y+
Sbjct: 491 FDLMYV-TCPEIGEVAFVSVIQACSHLGFLEKGKWIHHKLITCGVRKCIFIETALVDMYA 549

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           KCG++  A  VF+ M   R VVSW+++I  YGV+G     + L+ KM E+G  P+  T +
Sbjct: 550 KCGDLQTAQRVFDNMS-ERSVVSWSSLISSYGVHGQISEVIFLFSKMLESGIKPNDVTVM 608

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519
           ++L+AC HAG   +G++ FN M  +  ++P +EH+ C+VDLL+RAG L +A  +   +  
Sbjct: 609 NVLSACSHAGCVKEGMLFFNSM-RDFGIEPKREHFVCIVDLLSRAGDLDEAYEIIKLMPF 667

Query: 520 GMGPNIWRALLSGCVLH 536
             G +IW ALL+GC +H
Sbjct: 668 PPGASIWGALLNGCRIH 684



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 165/618 (26%), Positives = 301/618 (48%), Gaps = 64/618 (10%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           DP  S+KL+ +Y + G ++ + ++F      +   W +++  +  NG +++++  +  M+
Sbjct: 32  DPLPSTKLIESYSQLGDLQSSTSVFRTFHSPDSFMWGVLLKSHVWNGCYQEAISLYHQML 91

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVA 123
              +  NS+T   VL A +G  +L + + +HG ++K G + D    + N  L+S    + 
Sbjct: 92  SQQIQANSYTFPSVLRACSGFGDLGVGQRVHGRIIKSGFDMD---PVVNTALLSVYGEL- 147

Query: 124 GFINN--KLFQQAVLL---------------------FNFFR---GSGLVPNAVTMLTVI 157
           G++++  K+F +  L                       + FR     G  P++V +LTV+
Sbjct: 148 GYLDSARKVFGEMPLRDLVSWSSIISSVVENGEINEGLDAFRCMVSEGGTPDSVLVLTVV 207

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
             C  LG   L +  HG  +K G+  D  V++S++ MY+    L +A  +F  +  +   
Sbjct: 208 EACGELGVLRLAKSAHGYILKRGIENDRFVDSSLIFMYAKCGSLRSAEIVFENVTYRSTS 267

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           +WT M+  +    Y  +AL +F  M+K+ +  ++V +  ++     L  L+ GK +H  V
Sbjct: 268 TWTAMISSYNLGGYLKEALALFVSMQKTEVEPNSVTMRIILRSCTNLSLLREGKSVHCVV 327

Query: 278 VLGGLQSELR-LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
           +   L + L  L  +++ +Y+     D    + ++I  + +  W  +IS Y Q G  +E 
Sbjct: 328 IKNDLDANLDCLGPTLLELYAATAKHDLCEKILHEIGGRGIAVWNTLISVYAQKGLLKET 387

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
           ++ F++M Q++    DS +L S L+ASG    L++ LQ+HG   +  F     V N LI+
Sbjct: 388 VDLFVRM-QKQGFMPDSFSLASSLSASGNEGELQLGLQIHGHVIKRPFMD-EYVFNSLIN 445

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM----TETGEV 452
            YSKCG VDLAY++F++M   + VV+WN++I G   NG+   A++L+  M     E GEV
Sbjct: 446 MYSKCGYVDLAYMIFDQME-PKGVVTWNSMISGLSQNGYSTKAISLFDLMYVTCPEIGEV 504

Query: 453 PDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASG 512
                ++S++ AC H G    G  I +++I    V+        +VD+ A+ G L  A  
Sbjct: 505 ----AFVSVIQACSHLGFLEKGKWIHHKLITCG-VRKCIFIETALVDMYAKCGDLQTAQR 559

Query: 513 LAGKLLEGMGPNIWRALLSGCVLHVGRFQD-----AEALRSGSQKKGIIKI--------- 558
           +   + E    + W +L+S   +H G+  +     ++ L SG +   +  +         
Sbjct: 560 VFDNMSERSVVS-WSSLISSYGVH-GQISEVIFLFSKMLESGIKPNDVTVMNVLSACSHA 617

Query: 559 ----PGISFLNSTSRDFG 572
                G+ F NS  RDFG
Sbjct: 618 GCVKEGMLFFNSM-RDFG 634



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/204 (33%), Positives = 106/204 (51%), Gaps = 2/204 (0%)

Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISG 326
           L++  QLHA +++  L ++   S  +I  YS+ GDL SS SVF          W  ++  
Sbjct: 14  LRQLAQLHAHIIVTALHNDPLPSTKLIESYSQLGDLQSSTSVFRTFHSPDSFMWGVLLKS 73

Query: 327 YVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPR 386
           +V NGC +EA++ + +M  ++  + +S T  S+L A      L +  ++HG   ++GF  
Sbjct: 74  HVWNGCYQEAISLYHQMLSQQIQA-NSYTFPSVLRACSGFGDLGVGQRVHGRIIKSGFDM 132

Query: 387 YRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM 446
              V   L+S Y + G +D A  VF EM  LRD+VSW++II     NG     L  +  M
Sbjct: 133 DPVVNTALLSVYGELGYLDSARKVFGEMP-LRDLVSWSSIISSVVENGEINEGLDAFRCM 191

Query: 447 TETGEVPDSSTYLSILNACGHAGL 470
              G  PDS   L+++ ACG  G+
Sbjct: 192 VSEGGTPDSVLVLTVVEACGELGV 215



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 101/233 (43%), Gaps = 22/233 (9%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P +D Y  + L++ Y K G +  A  +FD++  K VV+W+ +I G S NG+  K++  F 
Sbjct: 433 PFMDEYVFNSLINMYSKCGYVDLAYMIFDQMEPKGVVTWNSMISGLSQNGYSTKAISLFD 492

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE----------------- 103
            M ++         V V+ A + L  LE  + IH  ++  G+                  
Sbjct: 493 LMYVTCPEIGEVAFVSVIQACSHLGFLEKGKWIHHKLITCGVRKCIFIETALVDMYAKCG 552

Query: 104 -----SDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                  +F+ +    +VS +++++ +  +    + + LF+    SG+ PN VT++ V+ 
Sbjct: 553 DLQTAQRVFDNMSERSVVSWSSLISSYGVHGQISEVIFLFSKMLESGIKPNDVTVMNVLS 612

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM 211
            C   G      L        G+         ++D+ S   DLD A +I + M
Sbjct: 613 ACSHAGCVKEGMLFFNSMRDFGIEPKREHFVCIVDLLSRAGDLDEAYEIIKLM 665


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  240 bits (612), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 166/577 (28%), Positives = 283/577 (49%), Gaps = 29/577 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEI-PEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           D + ++ L++ Y   G + +A  +F+E   E+N VSW+ ++  Y  N     +++ F  M
Sbjct: 134 DVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEM 193

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
           + SG+ P  F    V+ A  G +N+E  R +H ++V+ G + D                 
Sbjct: 194 VWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRV 253

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +FE + +  +VS NA+++G + N    +A+ L    + SGLVPN  T+ ++++ C
Sbjct: 254 DIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKAC 313

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
              G+  L   IHG  IK     D  +   ++DMY+    LD A ++F  M  +D+I   
Sbjct: 314 SGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCN 373

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++          +AL +F E+RK  +  +   L  ++   A L      +Q+HA  V  
Sbjct: 374 ALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKI 433

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           G   +  + N +I  Y KC  L  +  VF + +   +++ T++I+   Q      A+  F
Sbjct: 434 GFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLF 493

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
           ++M ++  +  D   L S+L A   L+A E   Q+H    +  F       N L+ +Y+K
Sbjct: 494 MEMLRKGLEP-DPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAK 552

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CG+++ A + F  +   R VVSW+ +I G   +GHG+ AL L+ +M + G  P+  T  S
Sbjct: 553 CGSIEDAELAFSSLP-ERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTS 611

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           +L AC HAGL ++    FN M E   +  ++EHY C++DLL RAG L DA  L   +   
Sbjct: 612 VLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQ 671

Query: 521 MGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIK 557
              +IW ALL    +H    +D E  +  ++K  I++
Sbjct: 672 ANASIWGALLGASRVH----KDPELGKLAAEKLFILE 704



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 141/514 (27%), Positives = 250/514 (48%), Gaps = 32/514 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + ++ L+  Y K G++  A  +F+++P+ +VVSW+ +I G  +NG   ++++    M 
Sbjct: 236 DVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMK 295

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGL-------KNPYL- 115
            SGL+PN FT+  +L A +G    +L R IHG M+K   +SD + G+       KN +L 
Sbjct: 296 YSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLD 355

Query: 116 --------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                         + CNA+++G  +     +A+ LF   R  GL  N  T+  V++   
Sbjct: 356 DARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTA 415

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMY---SCLMDLDAAIQIFREMECKDVIS 218
           +L + +    +H L +K+G I D  V N ++D Y   SCL D   A ++F E    D+I+
Sbjct: 416 SLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSD---ANRVFEECSSGDIIA 472

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
            T M+      ++   A+K+F EM +  +  D   L +L++  A L   ++GKQ+HA ++
Sbjct: 473 CTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLI 532

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
                S+    N+++  Y+KCG ++ +   F+ + E+ +VSW+A+I G  Q+G  + AL 
Sbjct: 533 KRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALE 592

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEA-GFPRYRSVQNCLISS 397
            F +M  E  +  + IT+ S+L A      ++   +      E  G  R     +C+I  
Sbjct: 593 LFGRMVDEGINP-NHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDL 651

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
             + G +D A  +   M F  +   W  ++    V+   E       K+    E   S T
Sbjct: 652 LGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLF-ILEPEKSGT 710

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEEN-KVKPS 490
           ++ + N    AG+ N+   +   M + N K +P+
Sbjct: 711 HVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPA 744



 Score =  188 bits (478), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 148/550 (26%), Positives = 248/550 (45%), Gaps = 32/550 (5%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+S Y K  +   A  +FDEIP+   VSWS ++  YS NG    +++AF  M   G+  N
Sbjct: 43  LISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCN 102

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF----------------------- 107
            F +  VL     + +  L   +H + +  G  SD+F                       
Sbjct: 103 EFALPVVLKC---VPDARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFN 159

Query: 108 EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRA 167
           E       VS N +++ ++ N     A+ +F     SG+ P       V+  C    +  
Sbjct: 160 EADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIE 219

Query: 168 LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
               +H + +++G   DV   N+++DMY  +  +D A  IF +M   DV+SW  ++   V
Sbjct: 220 AGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCV 279

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
              +   A+++  +M+ S ++ +   L +++   +  G    G+Q+H  ++     S+  
Sbjct: 280 LNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDY 339

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
           +   ++ MY+K   LD +R VF+ +  + L+   A+ISG    G   EAL+ F ++R+E 
Sbjct: 340 IGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEG 399

Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
              V+  TL ++L ++  L A     Q+H +A + GF     V N LI SY KC  +  A
Sbjct: 400 L-GVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDA 458

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
             VFEE     D+++  ++I       HGE A+ L+ +M   G  PD     S+LNAC  
Sbjct: 459 NRVFEECS-SGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACAS 517

Query: 468 AGLTNDGLVIFNQMIEENKVKPSQEHYG-CVVDLLARAGCLSDASGLAGKLLEGMGPNIW 526
                 G  +   +I+   +  S    G  +V   A+ G + DA  LA   L   G   W
Sbjct: 518 LSAYEQGKQVHAHLIKRQFM--SDAFAGNALVYTYAKCGSIEDAE-LAFSSLPERGVVSW 574

Query: 527 RALLSGCVLH 536
            A++ G   H
Sbjct: 575 SAMIGGLAQH 584



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 115/389 (29%), Positives = 193/389 (49%), Gaps = 19/389 (4%)

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           +H   +K G +   S  N ++  YS       A ++F E+     +SW+ ++  + +   
Sbjct: 26  LHASLLKSGSL--ASFRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGL 83

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
              A++ F  MR   + C+  AL  ++     + D + G Q+HA  +  G  S++ ++N+
Sbjct: 84  PRSAIQAFHGMRAEGVCCNEFALPVVLKC---VPDARLGAQVHAMAMATGFGSDVFVANA 140

Query: 292 IIAMYSKCGDLDSSRSVFNQI-TEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDS 350
           ++AMY   G +D +R VFN+  +E++ VSW  ++S YV+N    +A+  F +M       
Sbjct: 141 LVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQP 200

Query: 351 VDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIV 410
            +      ++ A      +E   Q+H +    G+ +     N L+  Y K G VD+A ++
Sbjct: 201 TE-FGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVI 259

Query: 411 FEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGL 470
           FE+M    DVVSWN +I G  +NGH   A+ L  +M  +G VP+  T  SIL AC  AG 
Sbjct: 260 FEKMPD-SDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGA 318

Query: 471 TNDGLVIFNQMIEENKVKPSQEHYGC-VVDLLARAGCLSDASGLAGKLLEGMGPN---IW 526
            + G  I   MI+ N    S ++ G  +VD+ A+   L DA     K+ + M      + 
Sbjct: 319 FDLGRQIHGFMIKAN--ADSDDYIGVGLVDMYAKNHFLDDAR----KVFDWMFHRDLILC 372

Query: 527 RALLSGCVLHVGRFQDAEALRSGSQKKGI 555
            AL+SGC  H GR  +A +L    +K+G+
Sbjct: 373 NALISGCS-HGGRHDEALSLFYELRKEGL 400



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 127/271 (46%), Gaps = 18/271 (6%)

Query: 270 GKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQ 329
           G  LHA ++  G  +  R  N +I+ YSKC     +R VF++I +   VSW+++++ Y  
Sbjct: 23  GAHLHASLLKSGSLASFR--NHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSN 80

Query: 330 NGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS 389
           NG  R A+  F  MR E     +   L  +L     +    +  Q+H +A   GF     
Sbjct: 81  NGLPRSAIQAFHGMRAEGV-CCNEFALPVVLKC---VPDARLGAQVHAMAMATGFGSDVF 136

Query: 390 VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
           V N L++ Y   G +D A  VF E    R+ VSWN ++  Y  N     A+ ++ +M  +
Sbjct: 137 VANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWS 196

Query: 450 GEVPDSSTYLSILNACG-----HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARA 504
           G  P    +  ++NAC       AG     +V+  +M  +  V  +      +VD+  + 
Sbjct: 197 GIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVV--RMGYDKDVFTAN----ALVDMYMKM 250

Query: 505 GCLSDASGLAGKLLEGMGPNIWRALLSGCVL 535
           G +  AS +  K+ +    + W AL+SGCVL
Sbjct: 251 GRVDIASVIFEKMPDSDVVS-WNALISGCVL 280


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  240 bits (612), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 155/526 (29%), Positives = 258/526 (49%), Gaps = 56/526 (10%)

Query: 45  GYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES 104
            Y   G H ++ + F     +   PN FT   +L   A  + L+   S            
Sbjct: 50  AYGKAGRHARARRVFD----ATPHPNLFTYNALLSTLAHARLLDDMDS------------ 93

Query: 105 DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFF--RGSGLVPNAVTMLTVIRGCVA 162
            LF  +     VS NA++AGF       +AV L++     GS + P+ +TM  ++    A
Sbjct: 94  -LFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAASA 152

Query: 163 LGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME---------- 212
           LG RAL    H   ++LG  ++  V + ++ MY+ +  +  A ++F EM+          
Sbjct: 153 LGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTM 212

Query: 213 ------CK---------------DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDT 251
                 CK               D I+WT M+  F        AL  FR MR   I  D 
Sbjct: 213 ITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQ 272

Query: 252 VALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQ 311
               ++++    L  L++GKQ+HA ++       + + ++++ MYSKC  +  + + F +
Sbjct: 273 YTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRR 332

Query: 312 ITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEI 371
           ++ K+++SWTA+I GY QNGC+ EA+  F +M+++  D  D  TL S++++   LA+LE 
Sbjct: 333 MSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDP-DDFTLGSVISSCANLASLEE 391

Query: 372 CLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYG 431
             Q H +A  +G   Y +V N L++ Y KCG+++ A+ +F+EM F  D VSW  ++ GY 
Sbjct: 392 GAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLF-HDQVSWTALVTGYA 450

Query: 432 VNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQ 491
             G  +  + L+ KM      PD  T++ +L+AC  AG    G   F+ M +++ + P  
Sbjct: 451 QFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPID 510

Query: 492 EHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI--WRALLSGCVL 535
           +HY C++DL +R+G L +A     ++   M P+   W  LLS C L
Sbjct: 511 DHYTCMIDLYSRSGRLKEAEEFIKQM--PMHPDAIGWGTLLSACRL 554



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 125/493 (25%), Positives = 228/493 (46%), Gaps = 59/493 (11%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P +  YN+  LLS    +  + + ++LF  + +++ VS++ VI G+S  G H ++++ + 
Sbjct: 70  PNLFTYNA--LLSTLAHARLLDDMDSLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYH 127

Query: 61  HMMLSG--LLPNSFTMVGVLVAAAGLQNLELARSIH-------------------GLMVK 99
            ++ +G  + P+  TM  +++AA+ L +  L R  H                   G+  K
Sbjct: 128 TLLRAGSSVRPSRITMSAMVMAASALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAK 187

Query: 100 FGLESD----------------------------------LFEGLKNPYLVSCNAIVAGF 125
            GL  D                                  LFE + +   ++   +V GF
Sbjct: 188 MGLIGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGF 247

Query: 126 INNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDV 185
             N L  QA+  F   R  G+  +  T  +++  C AL +    + IH   I+     +V
Sbjct: 248 TQNGLESQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNV 307

Query: 186 SVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKS 245
            V ++++DMYS    +  A   FR M CK++ISWT ++  +     + +A+++F EM++ 
Sbjct: 308 FVGSALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRD 367

Query: 246 RIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSS 305
            I  D   L ++IS  A L  L+ G Q H   ++ GL   + +SN+++ +Y KCG ++ +
Sbjct: 368 GIDPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDA 427

Query: 306 RSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGE 365
             +F+++     VSWTA+++GY Q G A+E ++ F KM  +     D +T + +L+A   
Sbjct: 428 HRLFDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKP-DGVTFIGVLSACSR 486

Query: 366 LAALEI-CLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWN 424
              +E  C   H +  + G         C+I  YS+ G +  A    ++M    D + W 
Sbjct: 487 AGFVEKGCSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQMPMHPDAIGWG 546

Query: 425 TIIYGYGVNGHGE 437
           T++    + G  E
Sbjct: 547 TLLSACRLRGDME 559


>gi|449453035|ref|XP_004144264.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial-like [Cucumis sativus]
          Length = 804

 Score =  240 bits (612), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 164/557 (29%), Positives = 292/557 (52%), Gaps = 27/557 (4%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +DP  ++ LLS Y + G +  A  +F E+P +++VSWS +I     NG   + + AF  M
Sbjct: 132 MDPVVNTALLSVYGELGYLDSARKVFGEMPLRDLVSWSSIISSVVENGEINEGLDAFRCM 191

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
           +  G  P+S  ++ V+ A   L  L LA+S HG ++K G+E+D                 
Sbjct: 192 VSEGGTPDSVLVLTVVEACGELGVLRLAKSAHGYILKRGIENDRFVDSSLIFMYAKCGSL 251

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +FE +      +  A+++ +      ++A+ LF   + + + PN+VTM  ++R C
Sbjct: 252 RSAEIVFENVTYRSTSTWTAMISSYNLGGYLKEALALFVSMQKTEVEPNSVTMRIILRSC 311

Query: 161 VALGSRALCELIHGLTIKLGLILDVS-VNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
             L      + +H + IK  L  ++  +  ++L++Y+     D   +I  E+  + +  W
Sbjct: 312 TNLSLLREGKSVHCVVIKNDLDANLDCLGPTLLELYAATAKHDLCEKILHEIGGRGIAVW 371

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
             ++ ++       + + +F  M+K   + D+ +L + +S +   G+L+ G Q+H  V+ 
Sbjct: 372 NTLISVYAQKGLLKETVDLFVRMQKQGFMPDSFSLASSLSASGNEGELQLGLQIHGHVIK 431

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
                E  + NS+I MYSKCG +D +  +F+Q+  K +V+W ++ISG  QNG + +A++ 
Sbjct: 432 RPFMDEY-VFNSLINMYSKCGYVDLAYMIFDQMEPKGVVTWNSMISGLSQNGYSTKAISL 490

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           F  M       +  +  VS++ A   L  LE    +H      G  +   ++  L+  Y+
Sbjct: 491 FDLMYV-TCPEIGEVAFVSVIQACSHLGFLEKGKWIHHKLITCGVRKCIFIETALVDMYA 549

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           KCG++  A  VF+ M   R VVSW+++I  YGV+G     + L+ KM E+G  P+  T +
Sbjct: 550 KCGDLQTAQRVFDNMS-ERSVVSWSSLISSYGVHGQISEVIFLFSKMLESGIKPNDVTVM 608

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519
           ++L+AC HAG   +G++ FN M  +  ++P +EH+ C+VDLL+RAG L +A  +   +  
Sbjct: 609 NVLSACSHAGCVKEGMLFFNSM-RDFGIEPKREHFVCIVDLLSRAGDLDEAYEIIKLMPF 667

Query: 520 GMGPNIWRALLSGCVLH 536
             G +IW ALL+GC +H
Sbjct: 668 PPGASIWGALLNGCRIH 684



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 165/618 (26%), Positives = 301/618 (48%), Gaps = 64/618 (10%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           DP  S+KL+ +Y + G ++ + ++F      +   W +++  +  NG +++++  +  M+
Sbjct: 32  DPLPSTKLIESYSQLGDLQSSTSVFRTFHSPDSFMWGVLLKSHVWNGCYQEAISLYHQML 91

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVA 123
              +  NS+T   VL A +G  +L + + +HG ++K G + D    + N  L+S    + 
Sbjct: 92  SQQIQANSYTFPSVLRACSGFGDLGVGQRVHGRIIKSGFDMD---PVVNTALLSVYGEL- 147

Query: 124 GFINN--KLFQQAVLL---------------------FNFFR---GSGLVPNAVTMLTVI 157
           G++++  K+F +  L                       + FR     G  P++V +LTV+
Sbjct: 148 GYLDSARKVFGEMPLRDLVSWSSIISSVVENGEINEGLDAFRCMVSEGGTPDSVLVLTVV 207

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
             C  LG   L +  HG  +K G+  D  V++S++ MY+    L +A  +F  +  +   
Sbjct: 208 EACGELGVLRLAKSAHGYILKRGIENDRFVDSSLIFMYAKCGSLRSAEIVFENVTYRSTS 267

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           +WT M+  +    Y  +AL +F  M+K+ +  ++V +  ++     L  L+ GK +H  V
Sbjct: 268 TWTAMISSYNLGGYLKEALALFVSMQKTEVEPNSVTMRIILRSCTNLSLLREGKSVHCVV 327

Query: 278 VLGGLQSELR-LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
           +   L + L  L  +++ +Y+     D    + ++I  + +  W  +IS Y Q G  +E 
Sbjct: 328 IKNDLDANLDCLGPTLLELYAATAKHDLCEKILHEIGGRGIAVWNTLISVYAQKGLLKET 387

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
           ++ F++M Q++    DS +L S L+ASG    L++ LQ+HG   +  F     V N LI+
Sbjct: 388 VDLFVRM-QKQGFMPDSFSLASSLSASGNEGELQLGLQIHGHVIKRPFMD-EYVFNSLIN 445

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM----TETGEV 452
            YSKCG VDLAY++F++M   + VV+WN++I G   NG+   A++L+  M     E GEV
Sbjct: 446 MYSKCGYVDLAYMIFDQME-PKGVVTWNSMISGLSQNGYSTKAISLFDLMYVTCPEIGEV 504

Query: 453 PDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASG 512
                ++S++ AC H G    G  I +++I    V+        +VD+ A+ G L  A  
Sbjct: 505 ----AFVSVIQACSHLGFLEKGKWIHHKLITCG-VRKCIFIETALVDMYAKCGDLQTAQR 559

Query: 513 LAGKLLEGMGPNIWRALLSGCVLHVGRFQD-----AEALRSGSQKKGIIKI--------- 558
           +   + E    + W +L+S   +H G+  +     ++ L SG +   +  +         
Sbjct: 560 VFDNMSERSVVS-WSSLISSYGVH-GQISEVIFLFSKMLESGIKPNDVTVMNVLSACSHA 617

Query: 559 ----PGISFLNSTSRDFG 572
                G+ F NS  RDFG
Sbjct: 618 GCVKEGMLFFNSM-RDFG 634



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/204 (33%), Positives = 105/204 (51%), Gaps = 2/204 (0%)

Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISG 326
           L+   QLHA +++  L ++   S  +I  YS+ GDL SS SVF          W  ++  
Sbjct: 14  LRTLAQLHAHIIVTALHNDPLPSTKLIESYSQLGDLQSSTSVFRTFHSPDSFMWGVLLKS 73

Query: 327 YVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPR 386
           +V NGC +EA++ + +M  ++  + +S T  S+L A      L +  ++HG   ++GF  
Sbjct: 74  HVWNGCYQEAISLYHQMLSQQIQA-NSYTFPSVLRACSGFGDLGVGQRVHGRIIKSGFDM 132

Query: 387 YRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM 446
              V   L+S Y + G +D A  VF EM  LRD+VSW++II     NG     L  +  M
Sbjct: 133 DPVVNTALLSVYGELGYLDSARKVFGEMP-LRDLVSWSSIISSVVENGEINEGLDAFRCM 191

Query: 447 TETGEVPDSSTYLSILNACGHAGL 470
              G  PDS   L+++ ACG  G+
Sbjct: 192 VSEGGTPDSVLVLTVVEACGELGV 215



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 101/233 (43%), Gaps = 22/233 (9%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P +D Y  + L++ Y K G +  A  +FD++  K VV+W+ +I G S NG+  K++  F 
Sbjct: 433 PFMDEYVFNSLINMYSKCGYVDLAYMIFDQMEPKGVVTWNSMISGLSQNGYSTKAISLFD 492

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE----------------- 103
            M ++         V V+ A + L  LE  + IH  ++  G+                  
Sbjct: 493 LMYVTCPEIGEVAFVSVIQACSHLGFLEKGKWIHHKLITCGVRKCIFIETALVDMYAKCG 552

Query: 104 -----SDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                  +F+ +    +VS +++++ +  +    + + LF+    SG+ PN VT++ V+ 
Sbjct: 553 DLQTAQRVFDNMSERSVVSWSSLISSYGVHGQISEVIFLFSKMLESGIKPNDVTVMNVLS 612

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM 211
            C   G      L        G+         ++D+ S   DLD A +I + M
Sbjct: 613 ACSHAGCVKEGMLFFNSMRDFGIEPKREHFVCIVDLLSRAGDLDEAYEIIKLM 665


>gi|449453244|ref|XP_004144368.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49740-like [Cucumis sativus]
          Length = 735

 Score =  240 bits (612), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 154/558 (27%), Positives = 283/558 (50%), Gaps = 34/558 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y+ + LLS   K G I+ A  +FD +P+ NV  W+ +I G + +G    +M  F  M 
Sbjct: 125 DVYSWTTLLSACTKMGHIEYASEMFDIMPKGNVACWNAMITGSAESGLDWVAMNTFYEMH 184

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK-----------------FGLES-- 104
             G+ P++++   +L +    +  +L R +H  ++K                 F +E+  
Sbjct: 185 KMGVKPDNYSFACIL-SLCTKEIEDLGRQVHSSVIKAGYLRKTSVVNALITMYFSIENLE 243

Query: 105 ---DLFEGLKNPYL--VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
              ++FEG ++     ++ N ++ G +  +  ++A+++F   + + L P  +T ++++  
Sbjct: 244 DAYEVFEGTESEVRDQITYNVMIDGLVCVRRNEEALIMFKDMKRACLSPTELTFVSIMSS 303

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C  +    + + +H   IKLG      V NS + MY+   +  AA  +F+ +  KD+ISW
Sbjct: 304 CSII---QVAQQVHSQAIKLGFESFTLVGNSTITMYTSCGEFQAANAVFQMLIEKDLISW 360

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
             ++  +V   +   A+  F +M+++ I  D     +L+ V+  +  ++    +HA V  
Sbjct: 361 NAIISSYVQGNFGKSAVLAFLQMQRTGIGPDEFTFGSLLGVSEFIEIVE---MVHAYVYK 417

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            GL   + + N++++ Y+KC  +  S  VF++I  K+++SW  +I G++ NG   +AL  
Sbjct: 418 NGLILIIEILNALVSAYAKCRKVKQSLQVFSEINSKNIISWNTVIYGFLLNGLPLQALEH 477

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           F K+   K     + TL  +L+    ++ L+I  Q+HG    +G     S+ N LI+ YS
Sbjct: 478 FSKLIMSKLKP-STFTLSIVLSICANISTLDIGKQIHGYILRSGNSSETSLCNGLITMYS 536

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV-PDSSTY 458
           KCG +  +   F  M   RD+VSWN+II  Y  +G G+ A+  +  M +   + PD +T+
Sbjct: 537 KCGLLGWSLRTFNVM-IERDIVSWNSIISAYAQHGQGKEAVDCFKAMQDMPSIMPDQATF 595

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
            +IL+AC HAGL  +   I + M+ + +  PS +   C+VDL+ R+G +  A  +     
Sbjct: 596 TTILSACSHAGLVEEACQILDIMLIDYRAVPSVDQLSCIVDLIGRSGYIDQAESVIESAQ 655

Query: 519 EGMGPNIWRALLSGCVLH 536
            G   ++W AL S C  H
Sbjct: 656 YGEHTHVWWALFSACAAH 673



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 103/416 (24%), Positives = 185/416 (44%), Gaps = 58/416 (13%)

Query: 115 LVSCNAIVAGFINNKLFQQAVLLFNFFRGS---GLVPNAVTMLTVIRGCVALGSRALCEL 171
           L+  N ++A    +  +  ++ LF     S    + P+   + T +  C      A    
Sbjct: 22  LLEYNRLLAELKRSSRYIDSLQLFTQIHSSHCFNIKPDHYNLSTTLAVCANFRDIAFGSQ 81

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDF-- 229
           +HG  I+ GL     V N+VL +Y+ + D  +  + F+E+E  DV SWT ++        
Sbjct: 82  LHGYAIRSGLKFYPHVANTVLSLYAKIEDFVSLKRGFQEIEKPDVYSWTTLLSACTKMGH 141

Query: 230 -EYAGD----------------------------ALKIFREMRKSRIICDTVALLNLISV 260
            EYA +                            A+  F EM K  +  D  +   ++S+
Sbjct: 142 IEYASEMFDIMPKGNVACWNAMITGSAESGLDWVAMNTFYEMHKMGVKPDNYSFACILSL 201

Query: 261 -NAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVF--NQITEKSL 317
               + DL  G+Q+H+ V+  G   +  + N++I MY    +L+ +  VF   +   +  
Sbjct: 202 CTKEIEDL--GRQVHSSVIKAGYLRKTSVVNALITMYFSIENLEDAYEVFEGTESEVRDQ 259

Query: 318 VSWTAIISGYVQNGCAR---EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQ 374
           +++  +I G V   C R   EAL  F  M++      + +T VSI+++    + +++  Q
Sbjct: 260 ITYNVMIDGLV---CVRRNEEALIMFKDMKRACLSPTE-LTFVSIMSSC---SIIQVAQQ 312

Query: 375 LHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNG 434
           +H  A + GF  +  V N  I+ Y+ CG    A  VF +M   +D++SWN II  Y    
Sbjct: 313 VHSQAIKLGFESFTLVGNSTITMYTSCGEFQAANAVF-QMLIEKDLISWNAIISSYVQGN 371

Query: 435 HGETALALYHKMTETGEVPDSSTYLSILNACG--------HAGLTNDGLVIFNQMI 482
            G++A+  + +M  TG  PD  T+ S+L            HA +  +GL++  +++
Sbjct: 372 FGKSAVLAFLQMQRTGIGPDEFTFGSLLGVSEFIEIVEMVHAYVYKNGLILIIEIL 427



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 135/300 (45%), Gaps = 41/300 (13%)

Query: 204 AIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSR---IICDTVALLNLISV 260
           +++   E   +D++ + R++          D+L++F ++  S    I  D   L   ++V
Sbjct: 10  SLKTIAESASQDLLEYNRLLAELKRSSRYIDSLQLFTQIHSSHCFNIKPDHYNLSTTLAV 69

Query: 261 NAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSW 320
            A   D+  G QLH   +  GL+    ++N+++++Y+K  D  S +  F +I +  + SW
Sbjct: 70  CANFRDIAFGSQLHGYAIRSGLKFYPHVANTVLSLYAKIEDFVSLKRGFQEIEKPDVYSW 129

Query: 321 T-------------------------------AIISGYVQNGCAREALNQFIKMRQE--K 347
           T                               A+I+G  ++G    A+N F +M +   K
Sbjct: 130 TTLLSACTKMGHIEYASEMFDIMPKGNVACWNAMITGSAESGLDWVAMNTFYEMHKMGVK 189

Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
            D+     ++S+ T   E    ++  Q+H    +AG+ R  SV N LI+ Y    N++ A
Sbjct: 190 PDNYSFACILSLCTKEIE----DLGRQVHSSVIKAGYLRKTSVVNALITMYFSIENLEDA 245

Query: 408 YIVFE-EMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           Y VFE     +RD +++N +I G       E AL ++  M      P   T++SI+++C 
Sbjct: 246 YEVFEGTESEVRDQITYNVMIDGLVCVRRNEEALIMFKDMKRACLSPTELTFVSIMSSCS 305


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  240 bits (612), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 166/577 (28%), Positives = 283/577 (49%), Gaps = 29/577 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEI-PEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           D + ++ L++ Y   G + +A  +F+E   E+N VSW+ ++  Y  N     +++ F  M
Sbjct: 134 DVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEM 193

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
           + SG+ P  F    V+ A  G +N+E  R +H ++V+ G + D                 
Sbjct: 194 VWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRV 253

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +FE + +  +VS NA+++G + N    +A+ L    + SGLVPN  T+ ++++ C
Sbjct: 254 DIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKAC 313

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
              G+  L   IHG  IK     D  +   ++DMY+    LD A ++F  M  +D+I   
Sbjct: 314 SGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCN 373

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++          +AL +F E+RK  +  +   L  ++   A L      +Q+HA  V  
Sbjct: 374 ALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKI 433

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           G   +  + N +I  Y KC  L  +  VF + +   +++ T++I+   Q      A+  F
Sbjct: 434 GFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLF 493

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
           ++M ++  +  D   L S+L A   L+A E   Q+H    +  F       N L+ +Y+K
Sbjct: 494 MEMLRKGLEP-DPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAK 552

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CG+++ A + F  +   R VVSW+ +I G   +GHG+ AL L+ +M + G  P+  T  S
Sbjct: 553 CGSIEDAELAFSSLP-ERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTS 611

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           +L AC HAGL ++    FN M E   +  ++EHY C++DLL RAG L DA  L   +   
Sbjct: 612 VLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQ 671

Query: 521 MGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIK 557
              +IW ALL    +H    +D E  +  ++K  I++
Sbjct: 672 ANASIWGALLGASRVH----KDPELGKLAAEKLFILE 704



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 141/514 (27%), Positives = 250/514 (48%), Gaps = 32/514 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + ++ L+  Y K G++  A  +F+++P+ +VVSW+ +I G  +NG   ++++    M 
Sbjct: 236 DVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMK 295

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGL-------KNPYL- 115
            SGL+PN FT+  +L A +G    +L R IHG M+K   +SD + G+       KN +L 
Sbjct: 296 YSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLD 355

Query: 116 --------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                         + CNA+++G  +     +A+ LF   R  GL  N  T+  V++   
Sbjct: 356 DARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTA 415

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMY---SCLMDLDAAIQIFREMECKDVIS 218
           +L + +    +H L +K+G I D  V N ++D Y   SCL D   A ++F E    D+I+
Sbjct: 416 SLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSD---ANRVFEECSSGDIIA 472

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
            T M+      ++   A+K+F EM +  +  D   L +L++  A L   ++GKQ+HA ++
Sbjct: 473 CTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLI 532

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
                S+    N+++  Y+KCG ++ +   F+ + E+ +VSW+A+I G  Q+G  + AL 
Sbjct: 533 KRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALE 592

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEA-GFPRYRSVQNCLISS 397
            F +M  E  +  + IT+ S+L A      ++   +      E  G  R     +C+I  
Sbjct: 593 LFGRMVDEGINP-NHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDL 651

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
             + G +D A  +   M F  +   W  ++    V+   E       K+    E   S T
Sbjct: 652 LGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLF-ILEPEKSGT 710

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEEN-KVKPS 490
           ++ + N    AG+ N+   +   M + N K +P+
Sbjct: 711 HVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPA 744



 Score =  188 bits (478), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 148/550 (26%), Positives = 247/550 (44%), Gaps = 32/550 (5%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+S Y K  +   A   FDEIP+   VSWS ++  YS NG    +++AF  M   G+  N
Sbjct: 43  LISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCN 102

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF----------------------- 107
            F +  VL     + +  L   +H + +  G  SD+F                       
Sbjct: 103 EFALPVVLKC---VPDARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFN 159

Query: 108 EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRA 167
           E       VS N +++ ++ N     A+ +F     SG+ P       V+  C    +  
Sbjct: 160 EADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIE 219

Query: 168 LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
               +H + +++G   DV   N+++DMY  +  +D A  IF +M   DV+SW  ++   V
Sbjct: 220 AGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCV 279

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
              +   A+++  +M+ S ++ +   L +++   +  G    G+Q+H  ++     S+  
Sbjct: 280 LNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDY 339

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
           +   ++ MY+K   LD +R VF+ +  + L+   A+ISG    G   EAL+ F ++R+E 
Sbjct: 340 IGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEG 399

Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
              V+  TL ++L ++  L A     Q+H +A + GF     V N LI SY KC  +  A
Sbjct: 400 L-GVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDA 458

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
             VFEE     D+++  ++I       HGE A+ L+ +M   G  PD     S+LNAC  
Sbjct: 459 NRVFEECS-SGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACAS 517

Query: 468 AGLTNDGLVIFNQMIEENKVKPSQEHYG-CVVDLLARAGCLSDASGLAGKLLEGMGPNIW 526
                 G  +   +I+   +  S    G  +V   A+ G + DA  LA   L   G   W
Sbjct: 518 LSAYEQGKQVHAHLIKRQFM--SDAFAGNALVYTYAKCGSIEDAE-LAFSSLPERGVVSW 574

Query: 527 RALLSGCVLH 536
            A++ G   H
Sbjct: 575 SAMIGGLAQH 584



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 115/389 (29%), Positives = 192/389 (49%), Gaps = 19/389 (4%)

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           +H   +K G +   S  N ++  YS       A + F E+     +SW+ ++  + +   
Sbjct: 26  LHASLLKSGSL--ASFRNHLISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVTAYSNNGL 83

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
              A++ F  MR   + C+  AL  ++     + D + G Q+HA  +  G  S++ ++N+
Sbjct: 84  PRSAIQAFHGMRAEGVCCNEFALPVVLKC---VPDARLGAQVHAMAMATGFGSDVFVANA 140

Query: 292 IIAMYSKCGDLDSSRSVFNQI-TEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDS 350
           ++AMY   G +D +R VFN+  +E++ VSW  ++S YV+N    +A+  F +M       
Sbjct: 141 LVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQP 200

Query: 351 VDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIV 410
            +      ++ A      +E   Q+H +    G+ +     N L+  Y K G VD+A ++
Sbjct: 201 TE-FGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVI 259

Query: 411 FEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGL 470
           FE+M    DVVSWN +I G  +NGH   A+ L  +M  +G VP+  T  SIL AC  AG 
Sbjct: 260 FEKMP-DSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGA 318

Query: 471 TNDGLVIFNQMIEENKVKPSQEHYGC-VVDLLARAGCLSDASGLAGKLLEGMGPN---IW 526
            + G  I   MI+ N    S ++ G  +VD+ A+   L DA     K+ + M      + 
Sbjct: 319 FDLGRQIHGFMIKAN--ADSDDYIGVGLVDMYAKNHFLDDAR----KVFDWMFHRDLILC 372

Query: 527 RALLSGCVLHVGRFQDAEALRSGSQKKGI 555
            AL+SGC  H GR  +A +L    +K+G+
Sbjct: 373 NALISGCS-HGGRHDEALSLFYELRKEGL 400



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 126/271 (46%), Gaps = 18/271 (6%)

Query: 270 GKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQ 329
           G  LHA ++  G  +  R  N +I+ YSKC     +R  F++I +   VSW+++++ Y  
Sbjct: 23  GAHLHASLLKSGSLASFR--NHLISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVTAYSN 80

Query: 330 NGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS 389
           NG  R A+  F  MR E     +   L  +L     +    +  Q+H +A   GF     
Sbjct: 81  NGLPRSAIQAFHGMRAEGV-CCNEFALPVVLKC---VPDARLGAQVHAMAMATGFGSDVF 136

Query: 390 VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
           V N L++ Y   G +D A  VF E    R+ VSWN ++  Y  N     A+ ++ +M  +
Sbjct: 137 VANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWS 196

Query: 450 GEVPDSSTYLSILNACG-----HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARA 504
           G  P    +  ++NAC       AG     +V+  +M  +  V  +      +VD+  + 
Sbjct: 197 GIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVV--RMGYDKDVFTAN----ALVDMYMKM 250

Query: 505 GCLSDASGLAGKLLEGMGPNIWRALLSGCVL 535
           G +  AS +  K+ +    + W AL+SGCVL
Sbjct: 251 GRVDIASVIFEKMPDSDVVS-WNALISGCVL 280


>gi|302797174|ref|XP_002980348.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
 gi|300151964|gb|EFJ18608.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
          Length = 801

 Score =  239 bits (611), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 159/566 (28%), Positives = 274/566 (48%), Gaps = 48/566 (8%)

Query: 11  LLSNYFKSGKIKEAENLFDEIP---EKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           L+S Y K G + +A+  FD +P   +++VV+W+ +I  +  NG   ++++ F  M   G 
Sbjct: 48  LISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDHDGA 107

Query: 68  LP-NSFTMVGVL--VAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY-------- 114
            P NS T V VL     AGL +LE  R+IHG +V  G+E + F    L + Y        
Sbjct: 108 PPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDD 167

Query: 115 ----------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                           LV+C+A+++    N   Q+++ LF      G  P+ VT+++V+ 
Sbjct: 168 AWEVFLRKSDEEPSTSLVTCSAMISACWQNGWPQESLRLFYAMNLEGTKPSGVTLVSVLN 227

Query: 159 GC--VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
            C  + +GS     L   + + +    D  +  ++L  Y+   DL  A   F  ++  DV
Sbjct: 228 ACSMLPVGSATAFVLEQAMEV-VSATRDNVLGTTLLTTYARSNDLSRARATFDAIQSPDV 286

Query: 217 ISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKR---GKQL 273
           +SW  M   ++      +AL +F  M    +       +  ++  A          GK++
Sbjct: 287 VSWNAMAAAYLQHHRPREALVLFERMLLEGVRPSVATFITALTACAAYPPQTASAIGKRI 346

Query: 274 HAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQI--TEKSLVSWTAIISGYVQNG 331
            + +   GL+ +  ++N+ + MY+KCG L  +R+VF +I  T +  ++W ++++ Y  +G
Sbjct: 347 QSLLEEAGLEGDTAVANATLNMYAKCGSLADARAVFERISPTRRDCITWNSMLAAYGHHG 406

Query: 332 CAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ 391
             +EA   F  M  EK    + +T V++L AS    ++    ++H      GF     +Q
Sbjct: 407 LGKEAFELFQAMEAEKLVKPNKVTFVAVLDASTSRTSIAQGREIHARVVSNGFESDTVIQ 466

Query: 392 NCLISSYSKCGNVDLAYIVFEEMGF-LRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
           N L++ Y+KCG++D A  +F++      DV++W +++ GY   G  E AL L+  M + G
Sbjct: 467 NALLNMYAKCGSLDDAQAIFDKSSSNQEDVIAWTSLVAGYAQYGQAERALKLFWTMQQQG 526

Query: 451 EVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
             P+  T++S L AC H G    G  + + M  ++ + P+ +H+ C+VDLL R G L +A
Sbjct: 527 VRPNHITFISALTACNHGGKLEQGCELLSGMTPDHGIVPASKHFSCIVDLLGRCGRLDEA 586

Query: 511 SGLAGKLLEGMGPN---IWRALLSGC 533
                KLLE         W ALL  C
Sbjct: 587 E----KLLERTSQADVITWMALLDAC 608



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 131/241 (54%), Gaps = 12/241 (4%)

Query: 253 ALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQI 312
           AL+ L++  + LG+L  G+++H+Q+     +    L N++I+MYSKCG L  ++  F+++
Sbjct: 9   ALIALVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRL 68

Query: 313 ---TEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGE--LA 367
              +++ +V+W A+IS +++NG AREAL  F  M  +     +S+T VS+L +  E  L 
Sbjct: 69  PRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDHDGAPPPNSVTFVSVLDSCVEAGLL 128

Query: 368 ALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVF-----EEMGFLRDVVS 422
           +LE    +HG    AG  R   V+  L+ SY K G++D A+ VF     EE      +V+
Sbjct: 129 SLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKSDEEPS--TSLVT 186

Query: 423 WNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMI 482
            + +I     NG  + +L L++ M   G  P   T +S+LNAC    + +    +  Q +
Sbjct: 187 CSAMISACWQNGWPQESLRLFYAMNLEGTKPSGVTLVSVLNACSMLPVGSATAFVLEQAM 246

Query: 483 E 483
           E
Sbjct: 247 E 247



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 109/444 (24%), Positives = 199/444 (44%), Gaps = 29/444 (6%)

Query: 148 PNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYS---CLMDLDAA 204
           PN   ++ ++  C  LG+ A    IH          +  + N+++ MYS    L+D   A
Sbjct: 5   PNCHALIALVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQA 64

Query: 205 IQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREM-RKSRIICDTVALLNLIS--VN 261
                    +DV++W  M+  F+    A +AL++FR+M        ++V  ++++   V 
Sbjct: 65  FDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDHDGAPPPNSVTFVSVLDSCVE 124

Query: 262 AILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVF----NQITEKSL 317
           A L  L+  + +H ++V  G++ E  +  +++  Y K G LD +  VF    ++    SL
Sbjct: 125 AGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKSDEEPSTSL 184

Query: 318 VSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHG 377
           V+ +A+IS   QNG  +E+L  F  M  E T     +TLVS+L A   L        +  
Sbjct: 185 VTCSAMISACWQNGWPQESLRLFYAMNLEGTKP-SGVTLVSVLNACSMLPVGSATAFVLE 243

Query: 378 IAFE-AGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHG 436
            A E     R   +   L+++Y++  ++  A   F+ +    DVVSWN +   Y  +   
Sbjct: 244 QAMEVVSATRDNVLGTTLLTTYARSNDLSRARATFDAIQS-PDVVSWNAMAAAYLQHHRP 302

Query: 437 ETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLV--IFNQMIEENKVKPSQEHY 494
             AL L+ +M   G  P  +T+++ L AC          +      ++EE  ++      
Sbjct: 303 REALVLFERMLLEGVRPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVA 362

Query: 495 GCVVDLLARAGCLSDASGLAGKLLEGMGPN-----IWRALLSGCVLHVGRFQDAEALRSG 549
              +++ A+ G L+DA      + E + P       W ++L+    H G  ++A  L   
Sbjct: 363 NATLNMYAKCGSLADARA----VFERISPTRRDCITWNSMLAA-YGHHGLGKEAFELFQA 417

Query: 550 SQKKGIIKIPGISFL----NSTSR 569
            + + ++K   ++F+     STSR
Sbjct: 418 MEAEKLVKPNKVTFVAVLDASTSR 441


>gi|297824009|ref|XP_002879887.1| hypothetical protein ARALYDRAFT_903365 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297325726|gb|EFH56146.1| hypothetical protein ARALYDRAFT_903365 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1359

 Score =  239 bits (611), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 168/564 (29%), Positives = 284/564 (50%), Gaps = 39/564 (6%)

Query: 4    DPYNSSKLLSNYFKSGKIKEAENLFDEIPEK-NVVSWSIVIHGYSINGFHEKSMKAFSHM 62
            D +  + L+  YFK G   +A  +F EI +K NVV W+++I G+  +   E S++ +   
Sbjct: 703  DSFLKTALIDMYFKFGLSTDAWRVFVEIEDKSNVVLWNVMIVGFGGSEICESSLELY--- 759

Query: 63   MLSG-----LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------ 105
            ML+      L+  SFT  G L A +  +N    R IH  +VK GL++D            
Sbjct: 760  MLAKSNSVKLVSTSFT--GALGACSQSENSAFGRQIHCDVVKMGLDNDPYVSTSLLSMYS 817

Query: 106  ----------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLT 155
                      +F  + +  L   NA+VA ++ N     A+ LF F R   ++P++ T+  
Sbjct: 818  KCGMVGEAETVFSCVVDKRLEIWNAMVAAYVENDNGYSALELFGFMRQKSVLPDSFTLSN 877

Query: 156  VIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYS-CLMDLDAAIQIFREMECK 214
            VI  C   G     + +H    K  +    ++ +++L +YS C  D DA + +F+ ME K
Sbjct: 878  VISCCSMFGLYDYGKSVHAELFKRPIQSTPAIESALLTLYSKCGCDTDAYL-VFKSMEEK 936

Query: 215  DVISWTRMMGLFVDFEYAGDALKIFREMRKS--RIICDTVALLNLISVNAILGDLKRGKQ 272
            D+++W  ++          +ALK+F +M+     +  D+  + ++I+  A L  L  G Q
Sbjct: 937  DMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVINACAGLEALSFGLQ 996

Query: 273  LHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC 332
            +H  ++  G    + + +S+I +YSKCG  + +  VF  +  +++V+W ++IS Y +N  
Sbjct: 997  VHGSMIKTGQVLNVFVGSSLIDLYSKCGLPEMALKVFTSMRPENIVAWNSMISCYSRNNL 1056

Query: 333  AREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN 392
               ++  F  M  +     DS+++ S+L A    A+L     LHG     G P    ++N
Sbjct: 1057 PELSIELFNLMLSQGIFP-DSVSITSVLVAISSTASLLKGKSLHGYTLRLGIPSDTHLKN 1115

Query: 393  CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV 452
             LI  Y KCG    A  +F++M   + +++WN +IYGYG +G   TAL+L+ ++ + GE 
Sbjct: 1116 ALIDMYVKCGFSKYAENIFKKMQH-KSLITWNLMIYGYGSHGDCRTALSLFDELKKAGET 1174

Query: 453  PDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASG 512
            PD  T+LS+++AC H+G   +G   F  M ++  ++P  EHY  +VDLL RAG L +A  
Sbjct: 1175 PDDVTFLSLISACNHSGFVEEGKNFFEIMKQDYGIEPKMEHYANMVDLLGRAGRLEEAYS 1234

Query: 513  LAGKLLEGMGPNIWRALLSGCVLH 536
                +      +IW  LLS    H
Sbjct: 1235 FIKAMPTEADSSIWLCLLSASRTH 1258



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 132/523 (25%), Positives = 249/523 (47%), Gaps = 41/523 (7%)

Query: 4    DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
            DPY S+ LLS Y K G + EAE +F  + +K +  W+ ++  Y  N     +++ F  M 
Sbjct: 805  DPYVSTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYVENDNGYSALELFGFMR 864

Query: 64   LSGLLPNSFTMVGVLVAAAGLQNLELARSIHG-------------------LMVKFGLES 104
               +LP+SFT+  V+   +     +  +S+H                    L  K G ++
Sbjct: 865  QKSVLPDSFTLSNVISCCSMFGLYDYGKSVHAELFKRPIQSTPAIESALLTLYSKCGCDT 924

Query: 105  D---LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGS--GLVPNAVTMLTVIRG 159
            D   +F+ ++   +V+  ++++G   N  F++A+ +F   +     L P++  M +VI  
Sbjct: 925  DAYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVINA 984

Query: 160  CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
            C  L + +    +HG  IK G +L+V V +S++D+YS     + A+++F  M  +++++W
Sbjct: 985  CAGLEALSFGLQVHGSMIKTGQVLNVFVGSSLIDLYSKCGLPEMALKVFTSMRPENIVAW 1044

Query: 220  TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
              M+  +        ++++F  M    I  D+V++ +++   +    L +GK LH   + 
Sbjct: 1045 NSMISCYSRNNLPELSIELFNLMLSQGIFPDSVSITSVLVAISSTASLLKGKSLHGYTLR 1104

Query: 280  GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
             G+ S+  L N++I MY KCG    + ++F ++  KSL++W  +I GY  +G  R AL+ 
Sbjct: 1105 LGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHKSLITWNLMIYGYGSHGDCRTALSL 1164

Query: 340  FIKMRQ--EKTDSVDSITLVSILTASGELAA----LEICLQLHGIAFEAGFPRYRSVQNC 393
            F ++++  E  D V  ++L+S    SG +       EI  Q +GI      P+     N 
Sbjct: 1165 FDELKKAGETPDDVTFLSLISACNHSGFVEEGKNFFEIMKQDYGIE-----PKMEHYAN- 1218

Query: 394  LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
            ++    + G ++ AY   + M    D   W  ++     + + E  +    K+    E  
Sbjct: 1219 MVDLLGRAGRLEEAYSFIKAMPTEADSSIWLCLLSASRTHHNVELGILSAEKLLRM-EPE 1277

Query: 454  DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGC 496
              STY+ ++N    AGL N+   +  +M E    +  Q+  GC
Sbjct: 1278 RGSTYVQLINLYMEAGLKNEAAKLLGEMKE----RGLQKQPGC 1316



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 136/494 (27%), Positives = 242/494 (48%), Gaps = 36/494 (7%)

Query: 4    DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHE-----KSMKA 58
            DP+ ++ L++ Y K G +  A  +FD   +  V +  + +    I+G+ +     + +  
Sbjct: 595  DPFIATSLVNMYVKCGFLDYAVQVFDGWSQSGVSARDVTVCNSMIDGYFKFRRFKEGVGC 654

Query: 59   FSHMMLSGLLPNSFTM---VGVLVAAAGLQNLELARSIHGLMV----------------- 98
            F  M++ G+ P++F++   V VL      +  E  + IHG M+                 
Sbjct: 655  FRRMLVLGVRPDAFSLSIVVSVLCKEGNFRR-EDGKQIHGYMLRNSLDGDSFLKTALIDM 713

Query: 99   --KFGLESDLF----EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVT 152
              KFGL +D +    E      +V  N ++ GF  +++ + ++ L+   + + +   + +
Sbjct: 714  YFKFGLSTDAWRVFVEIEDKSNVVLWNVMIVGFGGSEICESSLELYMLAKSNSVKLVSTS 773

Query: 153  MLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME 212
                +  C    + A    IH   +K+GL  D  V+ S+L MYS    +  A  +F  + 
Sbjct: 774  FTGALGACSQSENSAFGRQIHCDVVKMGLDNDPYVSTSLLSMYSKCGMVGEAETVFSCVV 833

Query: 213  CKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQ 272
             K +  W  M+  +V+ +    AL++F  MR+  ++ D+  L N+IS  ++ G    GK 
Sbjct: 834  DKRLEIWNAMVAAYVENDNGYSALELFGFMRQKSVLPDSFTLSNVISCCSMFGLYDYGKS 893

Query: 273  LHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC 332
            +HA++    +QS   + ++++ +YSKCG    +  VF  + EK +V+W ++ISG  +NG 
Sbjct: 894  VHAELFKRPIQSTPAIESALLTLYSKCGCDTDAYLVFKSMEEKDMVAWGSLISGLCKNGK 953

Query: 333  AREALNQFIKMRQEKTDSV--DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV 390
             +EAL  F  M+ +  DS+  DS  + S++ A   L AL   LQ+HG   + G      V
Sbjct: 954  FKEALKVFGDMKDDD-DSLKPDSDIMTSVINACAGLEALSFGLQVHGSMIKTGQVLNVFV 1012

Query: 391  QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
             + LI  YSKCG  ++A  VF  M    ++V+WN++I  Y  N   E ++ L++ M   G
Sbjct: 1013 GSSLIDLYSKCGLPEMALKVFTSMR-PENIVAWNSMISCYSRNNLPELSIELFNLMLSQG 1071

Query: 451  EVPDSSTYLSILNA 464
              PDS +  S+L A
Sbjct: 1072 IFPDSVSITSVLVA 1085



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 119/455 (26%), Positives = 215/455 (47%), Gaps = 34/455 (7%)

Query: 65   SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY-------- 114
            S L  + FT   +L A + L NL   ++IHG ++  G   D F    L N Y        
Sbjct: 555  SPLWTSVFTFPSLLKACSSLTNLSSGKTIHGSIIVLGWRYDPFIATSLVNMYVKCGFLDY 614

Query: 115  -----------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
                             +  CN+++ G+   + F++ V  F      G+ P+A ++  V+
Sbjct: 615  AVQVFDGWSQSGVSARDVTVCNSMIDGYFKFRRFKEGVGCFRRMLVLGVRPDAFSLSIVV 674

Query: 158  RGCVALGS--RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK- 214
                  G+  R   + IHG  ++  L  D  +  +++DMY        A ++F E+E K 
Sbjct: 675  SVLCKEGNFRREDGKQIHGYMLRNSLDGDSFLKTALIDMYFKFGLSTDAWRVFVEIEDKS 734

Query: 215  DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
            +V+ W  M+  F   E    +L+++   + + +   + +    +   +   +   G+Q+H
Sbjct: 735  NVVLWNVMIVGFGGSEICESSLELYMLAKSNSVKLVSTSFTGALGACSQSENSAFGRQIH 794

Query: 275  AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
              VV  GL ++  +S S+++MYSKCG +  + +VF+ + +K L  W A+++ YV+N    
Sbjct: 795  CDVVKMGLDNDPYVSTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYVENDNGY 854

Query: 335  EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
             AL  F  MRQ K+   DS TL ++++        +    +H   F+       ++++ L
Sbjct: 855  SALELFGFMRQ-KSVLPDSFTLSNVISCCSMFGLYDYGKSVHAELFKRPIQSTPAIESAL 913

Query: 395  ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV-- 452
            ++ YSKCG    AY+VF+ M   +D+V+W ++I G   NG  + AL ++  M +  +   
Sbjct: 914  LTLYSKCGCDTDAYLVFKSME-EKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLK 972

Query: 453  PDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKV 487
            PDS    S++NAC      + GL +   MI+  +V
Sbjct: 973  PDSDIMTSVINACAGLEALSFGLQVHGSMIKTGQV 1007



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 113/436 (25%), Positives = 201/436 (46%), Gaps = 14/436 (3%)

Query: 117 SCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAV-TMLTVIRGCVALGSRALCELIHGL 175
           S N+ +   I    + QA+ L+    GS  +  +V T  ++++ C +L + +  + IHG 
Sbjct: 527 SVNSGIRALIQKGEYLQALHLYTKHDGSSPLWTSVFTFPSLLKACSSLTNLSSGKTIHGS 586

Query: 176 TIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIF-----REMECKDVISWTRMMGLFVDFE 230
            I LG   D  +  S+++MY     LD A+Q+F       +  +DV     M+  +  F 
Sbjct: 587 IIVLGWRYDPFIATSLVNMYVKCGFLDYAVQVFDGWSQSGVSARDVTVCNSMIDGYFKFR 646

Query: 231 YAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKR--GKQLHAQVVLGGLQSELRL 288
              + +  FR M    +  D  +L  ++SV    G+ +R  GKQ+H  ++   L  +  L
Sbjct: 647 RFKEGVGCFRRMLVLGVRPDAFSLSIVVSVLCKEGNFRREDGKQIHGYMLRNSLDGDSFL 706

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKS-LVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
             ++I MY K G    +  VF +I +KS +V W  +I G+  +     +L  ++  +   
Sbjct: 707 KTALIDMYFKFGLSTDAWRVFVEIEDKSNVVLWNVMIVGFGGSEICESSLELYMLAKSNS 766

Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
              V S +    L A  +        Q+H    + G      V   L+S YSKCG V  A
Sbjct: 767 VKLV-STSFTGALGACSQSENSAFGRQIHCDVVKMGLDNDPYVSTSLLSMYSKCGMVGEA 825

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
             VF  +   R  + WN ++  Y  N +G +AL L+  M +   +PDS T  ++++ C  
Sbjct: 826 ETVFSCVVDKRLEI-WNAMVAAYVENDNGYSALELFGFMRQKSVLPDSFTLSNVISCCSM 884

Query: 468 AGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWR 527
            GL + G  +  ++ +   ++ +      ++ L ++ GC +DA  L  K +E      W 
Sbjct: 885 FGLYDYGKSVHAELFKR-PIQSTPAIESALLTLYSKCGCDTDAY-LVFKSMEEKDMVAWG 942

Query: 528 ALLSGCVLHVGRFQDA 543
           +L+SG +   G+F++A
Sbjct: 943 SLISG-LCKNGKFKEA 957


>gi|357494773|ref|XP_003617675.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519010|gb|AET00634.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 758

 Score =  239 bits (611), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 168/564 (29%), Positives = 286/564 (50%), Gaps = 41/564 (7%)

Query: 5   PYNS---SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           P NS   S  +S Y +  ++ +A  +FDEIP ++VV+W+ ++ GY  NG  E  ++  S 
Sbjct: 142 PENSAVGSSFVSLYSRCDEMNDAVKVFDEIPVRDVVAWTALVIGYVQNGESEMGLECISE 201

Query: 62  MMLSG---LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL------------ 106
           M   G     PN+ T+ G  +A   L +L   R +HGL+VK G+   L            
Sbjct: 202 MYRVGDDSQKPNARTLEGGFLACGNLGDLVSGRCLHGLVVKNGIGCLLDIQSSVLSMYCK 261

Query: 107 ----------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTV 156
                     F  + N  L+S  +++  +    +    V  F     + + P+ + +  +
Sbjct: 262 CGVPREAYQSFSEVINKDLLSWTSMIRVYARFGMMSDCVRFFWEMLENQVCPDGMVIGCI 321

Query: 157 IRG----CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME 212
           + G        G +A     HGL I+     D  V+NS+L MY     L  A ++F+  +
Sbjct: 322 LSGFGNSVDVYGGKAF----HGLIIRRHYAPDEMVDNSLLSMYCKFGMLSFAERLFQRSQ 377

Query: 213 CKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQ 272
              +  W  M+  +         +++FREM+   I  ++V +++ I+    LG++  G+ 
Sbjct: 378 -GSIEYWNFMIVGYGRIGKNVKCIQLFREMQYLGIRSESVGIVSAIASCGQLGEINLGRS 436

Query: 273 LHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC 332
           +H  V+ G +   + ++NS+I MY KC  ++ S  +FN+ +E+ ++ W A+IS ++    
Sbjct: 437 IHCNVIKGFVDETISVTNSLIEMYGKCDKMNVSWRIFNR-SERDVILWNALISAHIHVKH 495

Query: 333 AREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN 392
             EA++ F  M  E  +  ++ TLV +L+A   LA LE   +LH    E GF     +  
Sbjct: 496 YEEAISLFDIMIMEDQNP-NTATLVVVLSACSHLAFLEKGERLHRYINEKGFKLNLPLGT 554

Query: 393 CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV 452
            L+  Y+KCG ++ +  VF+ M   +DV+ WN +I GYG+NG+ E+A+ +++ M E+   
Sbjct: 555 ALVDMYAKCGQLEKSREVFDSM-MEKDVICWNAMISGYGMNGYAESAIEIFNLMEESNVK 613

Query: 453 PDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASG 512
           P+  T+LS+L+AC HAGL  +G  +F +M +   VKP+ +HY C+VDLL R+  L +A  
Sbjct: 614 PNEITFLSLLSACAHAGLVEEGKNVFAKM-QSYSVKPNLKHYTCMVDLLGRSCNLEEAEE 672

Query: 513 LAGKLLEGMGPNIWRALLSGCVLH 536
           L   +       +W ALLS C  H
Sbjct: 673 LVLSMPIPPDGGVWGALLSACKTH 696



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 132/555 (23%), Positives = 248/555 (44%), Gaps = 32/555 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           +P+ ++KL+S Y        +  LF  +P K+   W+  +        + + +  +S M 
Sbjct: 42  NPFIAAKLISLYDTLNHPTSSSTLFHSLPFKDTFLWNSFLKTLFSRSLYPQFLSFYSLMR 101

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
              +LPN FT   V  + A    +    ++H L  K G   +                  
Sbjct: 102 SENVLPNHFTFPMVASSYAHFMMIRSGMNLHALACKVGFFPENSAVGSSFVSLYSRCDEM 161

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAV-LLFNFFR--GSGLVPNAVTMLTVI 157
                +F+ +    +V+  A+V G++ N   +  +  +   +R       PNA T+    
Sbjct: 162 NDAVKVFDEIPVRDVVAWTALVIGYVQNGESEMGLECISEMYRVGDDSQKPNARTLEGGF 221

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
             C  LG       +HGL +K G+   + + +SVL MY        A Q F E+  KD++
Sbjct: 222 LACGNLGDLVSGRCLHGLVVKNGIGCLLDIQSSVLSMYCKCGVPREAYQSFSEVINKDLL 281

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           SWT M+ ++  F    D ++ F EM ++++  D + +  ++S      D+  GK  H  +
Sbjct: 282 SWTSMIRVYARFGMMSDCVRFFWEMLENQVCPDGMVIGCILSGFGNSVDVYGGKAFHGLI 341

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           +      +  + NS+++MY K G L  +  +F Q ++ S+  W  +I GY + G   + +
Sbjct: 342 IRRHYAPDEMVDNSLLSMYCKFGMLSFAERLF-QRSQGSIEYWNFMIVGYGRIGKNVKCI 400

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
             F +M+     S +S+ +VS + + G+L  + +   +H    +       SV N LI  
Sbjct: 401 QLFREMQYLGIRS-ESVGIVSAIASCGQLGEINLGRSIHCNVIKGFVDETISVTNSLIEM 459

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           Y KC  +++++ +F      RDV+ WN +I  +    H E A++L+  M    + P+++T
Sbjct: 460 YGKCDKMNVSWRIFNRSE--RDVILWNALISAHIHVKHYEEAISLFDIMIMEDQNPNTAT 517

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL 517
            + +L+AC H      G  + ++ I E   K +      +VD+ A+ G L  +  +   +
Sbjct: 518 LVVVLSACSHLAFLEKGERL-HRYINEKGFKLNLPLGTALVDMYAKCGQLEKSREVFDSM 576

Query: 518 LEGMGPNIWRALLSG 532
           +E      W A++SG
Sbjct: 577 MEK-DVICWNAMISG 590



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 98/217 (45%), Gaps = 6/217 (2%)

Query: 257 LISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKS 316
           LIS++  +  L+     HA  V  G  +   ++  +I++Y       SS ++F+ +  K 
Sbjct: 14  LISLSKRITTLQSLLPFHAVTVTTGNSTNPFIAAKLISLYDTLNHPTSSSTLFHSLPFKD 73

Query: 317 LVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLH 376
              W + +          + L+ +  MR E     +  T   + ++      +   + LH
Sbjct: 74  TFLWNSFLKTLFSRSLYPQFLSFYSLMRSENVLP-NHFTFPMVASSYAHFMMIRSGMNLH 132

Query: 377 GIAFEAG-FPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGH 435
            +A + G FP   +V +  +S YS+C  ++ A  VF+E+  +RDVV+W  ++ GY  NG 
Sbjct: 133 ALACKVGFFPENSAVGSSFVSLYSRCDEMNDAVKVFDEIP-VRDVVAWTALVIGYVQNGE 191

Query: 436 GETALALYHKMTETG---EVPDSSTYLSILNACGHAG 469
            E  L    +M   G   + P++ T      ACG+ G
Sbjct: 192 SEMGLECISEMYRVGDDSQKPNARTLEGGFLACGNLG 228


>gi|302805298|ref|XP_002984400.1| hypothetical protein SELMODRAFT_120073 [Selaginella moellendorffii]
 gi|300147788|gb|EFJ14450.1| hypothetical protein SELMODRAFT_120073 [Selaginella moellendorffii]
          Length = 660

 Score =  239 bits (611), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 160/558 (28%), Positives = 269/558 (48%), Gaps = 46/558 (8%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL-P 69
           L++ +  S +  EA  +FD    KN+VSW+ ++  YS NG  E+++  F  M  +  + P
Sbjct: 80  LINMFGGSSQACEARRVFDATHNKNIVSWNAMLSAYSQNGHFEETIALFKQMASTKTVKP 139

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE----------------------SDLF 107
           +  T   VL + A L+NL   +  H   V+ GLE                       D+F
Sbjct: 140 DKLTFASVLSSCANLENLREGKLAHAAAVEAGLEFAVPVAATLIQMYSKCHCLEEARDIF 199

Query: 108 EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRA 167
               +  +V+   +++ +  N   Q+A+ LF  FR + + P+ V   T +  C +  +  
Sbjct: 200 SRSPSSDVVAWTVMISAYAQNGRPQEAIALF--FRMT-VPPDGVAFATALGACASAENLE 256

Query: 168 LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
              ++    ++LGL  + +V N+VLD+Y    ++    +IF  M  +D +SW  M+  + 
Sbjct: 257 AGRVVRAQIVELGLDAERAVANAVLDLYGKCAEIVETAEIFGRMRQRDRVSWNTMVAAYA 316

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLN----LISVNAILGDLKRGKQLHAQVVLGGLQ 283
              +   +L  FR M+   +    V+L++    ++S  A L +L+ GK  HA  V  GL+
Sbjct: 317 RAGHTAGSLWCFRAMQLEGVCPSEVSLVSSFTSVLSSCANLENLREGKLAHAAAVEAGLE 376

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
             + ++ ++I MYSKC  L+ +R +F++     +V+WT +IS Y QNG  +EA+  F ++
Sbjct: 377 FAVPVAATLIQMYSKCHCLEEARDIFSRSPSSDVVAWTVMISAYAQNGRPQEAIALFFRI 436

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
               T   D +   + L A      LE  +    I  E G    R+V + ++  Y KC  
Sbjct: 437 ----TVPPDGVGFATALEACARAENLEAGVVRAKI-VELGLDAERAVADAVLDLYGKCAE 491

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           +     +F+ M   RD VSWNT++  Y   GH   +L  +  M   G  P   + +S+L+
Sbjct: 492 IVETAEIFDRMR-QRDRVSWNTMVAAYARAGHTAGSLWCFRAMQLEGVCPSEVSLVSVLS 550

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
              HAGL   G   F  +  +  + PS+E  GCVVDLL RAG     S +A  L+  + P
Sbjct: 551 TYSHAGLVEQGCQCFASIASDYGMVPSREQQGCVVDLLGRAG-----SWIAEDLIRVVAP 605

Query: 524 N-----IWRALLSGCVLH 536
           +     +W+A+LS C +H
Sbjct: 606 STSSSELWKAVLSSCRIH 623



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 122/469 (26%), Positives = 214/469 (45%), Gaps = 34/469 (7%)

Query: 33  EKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAA---AGLQNLEL 89
           + NVV+W+  I   + +     +++ F  ++L GL+P++ T +     A      + LE 
Sbjct: 4   KTNVVTWNAFIRALASSRDASGALQTFRSLLLQGLVPDTVTFINASQGAKTPPEAKYLET 63

Query: 90  ARSIHGLMVKFGLESDL----------------FEGLKNPYLVSCNAIVAGFINNKLFQQ 133
            R   G+ +   L + L                F+   N  +VS NA+++ +  N  F++
Sbjct: 64  CRQESGVQLDIALGNALINMFGGSSQACEARRVFDATHNKNIVSWNAMLSAYSQNGHFEE 123

Query: 134 AVLLFNFFRGSGLV-PNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVL 192
            + LF     +  V P+ +T  +V+  C  L +    +L H   ++ GL   V V  +++
Sbjct: 124 TIALFKQMASTKTVKPDKLTFASVLSSCANLENLREGKLAHAAAVEAGLEFAVPVAATLI 183

Query: 193 DMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTV 252
            MYS    L+ A  IF      DV++WT M+  +       +A+ +F  M    +  D V
Sbjct: 184 QMYSKCHCLEEARDIFSRSPSSDVVAWTVMISAYAQNGRPQEAIALFFRM---TVPPDGV 240

Query: 253 ALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQI 312
           A    +   A   +L+ G+ + AQ+V  GL +E  ++N+++ +Y KC ++  +  +F ++
Sbjct: 241 AFATALGACASAENLEAGRVVRAQIVELGLDAERAVANAVLDLYGKCAEIVETAEIFGRM 300

Query: 313 TEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE-----KTDSVDSITLVSILTASGELA 367
            ++  VSW  +++ Y + G    +L  F  M+ E     +   V S T  S+L++   L 
Sbjct: 301 RQRDRVSWNTMVAAYARAGHTAGSLWCFRAMQLEGVCPSEVSLVSSFT--SVLSSCANLE 358

Query: 368 ALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
            L      H  A EAG      V   LI  YSKC  ++ A  +F       DVV+W  +I
Sbjct: 359 NLREGKLAHAAAVEAGLEFAVPVAATLIQMYSKCHCLEEARDIFSRSPS-SDVVAWTVMI 417

Query: 428 YGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLV 476
             Y  NG  + A+AL+ ++T     PD   + + L AC  A     G+V
Sbjct: 418 SAYAQNGRPQEAIALFFRITVP---PDGVGFATALEACARAENLEAGVV 463



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/269 (29%), Positives = 122/269 (45%), Gaps = 7/269 (2%)

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
           +V++W   +        A  AL+ FR +    ++ DTV  +N    +         K L 
Sbjct: 6   NVVTWNAFIRALASSRDASGALQTFRSLLLQGLVPDTVTFIN---ASQGAKTPPEAKYLE 62

Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
                 G+Q ++ L N++I M+        +R VF+    K++VSW A++S Y QNG   
Sbjct: 63  TCRQESGVQLDIALGNALINMFGGSSQACEARRVFDATHNKNIVSWNAMLSAYSQNGHFE 122

Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
           E +  F +M   KT   D +T  S+L++   L  L      H  A EAG      V   L
Sbjct: 123 ETIALFKQMASTKTVKPDKLTFASVLSSCANLENLREGKLAHAAAVEAGLEFAVPVAATL 182

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           I  YSKC  ++ A  +F       DVV+W  +I  Y  NG  + A+AL+ +MT     PD
Sbjct: 183 IQMYSKCHCLEEARDIFSRSPS-SDVVAWTVMISAYAQNGRPQEAIALFFRMTVP---PD 238

Query: 455 SSTYLSILNACGHAGLTNDGLVIFNQMIE 483
              + + L AC  A     G V+  Q++E
Sbjct: 239 GVAFATALGACASAENLEAGRVVRAQIVE 267


>gi|125561353|gb|EAZ06801.1| hypothetical protein OsI_29045 [Oryza sativa Indica Group]
          Length = 696

 Score =  239 bits (611), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 173/626 (27%), Positives = 293/626 (46%), Gaps = 74/626 (11%)

Query: 5   PYNSSKLLSNYFKSGK--IKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           P+N  +LL+ Y +S    +  A  +FDE+P ++ VSW+ ++  ++ +G H ++ +    M
Sbjct: 27  PWN--QLLTAYSRSSPDGLAAARRVFDEVPRRDEVSWNALLAAHAASGAHPEAWRLLRAM 84

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--------------- 107
              GL  N+F +   L +AA  +   +   +  L +K GL +++F               
Sbjct: 85  HAQGLASNTFALGSALRSAAVARRPAIGAQLQSLALKSGLANNVFAASALLDVYAKCGRV 144

Query: 108 -------EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVT---MLTVI 157
                  +G+     VS NA++AG+  +     A+ LF      GLVP+  T   +LT +
Sbjct: 145 RDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLVPDEATFASLLTAV 204

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM-ECKDV 216
            G        L   +HG  +K G  L ++V N+ +  YS    L  + +IF  + + +D+
Sbjct: 205 EGPSCF----LMHQLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRIFDGIGDIRDL 260

Query: 217 ISWTRMMGLFVDFEYAGDALKIF-REMRKSRIICDTVALLNLISVNAILG-DLKRGKQLH 274
           ISW  M+G +       +A+K F R M++S +  D  +  ++IS  +  G D  +G+ +H
Sbjct: 261 ISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHGHDDHQGRVIH 320

Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGD---LDSSRSVFNQITEKSLVSWTAIISGYVQNG 331
             V+   L+    + N++IAMY++  +   ++ +   FN +  K  VSW ++++GY Q+G
Sbjct: 321 GLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSLVLKDTVSWNSMLTGYSQHG 380

Query: 332 CAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ 391
            + +AL  F  M  E   + D     + L +S ELA L++  Q+HG+   +GF     V 
Sbjct: 381 LSADALKFFRCMCSENVRT-DEYAFSAALRSSSELAVLQLGKQIHGLVIHSGFASNDFVS 439

Query: 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE 451
           + LI  YSK G +D A   FEE       V WN +I+GY  +G  E    L+++M +   
Sbjct: 440 SSLIFMYSKSGIIDDARKSFEEAD-KSSSVPWNAMIFGYAQHGQAENVDILFNEMLQRKA 498

Query: 452 VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDAS 511
             D  T++ ++ +C HAGL ++G  I N M  +  V    EHY C VDL  RAG L  A 
Sbjct: 499 PLDHITFVGLITSCSHAGLVDEGSEILNTMETKYGVPLRMEHYACGVDLYGRAGQLDKAK 558

Query: 512 GLAGKLLEGMGPNIWRALLSGCVLH---------------------------------VG 538
            L   +       +W  LL  C +H                                 +G
Sbjct: 559 KLIDSMPFEPDAMVWMTLLGACRIHGNVELASDVASHLFVAEPRQHSTYVLLSSMYSGLG 618

Query: 539 RFQDAEALRSGSQKKGIIKIPGISFL 564
            + D   ++   +K+G+ K+PG S +
Sbjct: 619 MWSDRATVQRVMKKRGLSKVPGWSLI 644


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  239 bits (611), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 166/622 (26%), Positives = 286/622 (45%), Gaps = 74/622 (11%)

Query: 7   NSSKLLSNYFKSGKIKEAENLFDEIP-------EKNVVSWSIVIHGYSINGFHEKSMKAF 59
           N ++ L  +F    IK + N    +P         N    S +I  Y  N     + K +
Sbjct: 57  NETQQLHGHF----IKTSSNCSYRVPLAALESYSSNAAIHSFLITSYIKNNCPADAAKIY 112

Query: 60  SHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-------------- 105
           ++M  +    ++F +  VL A   + +  L + +HG +VK G   D              
Sbjct: 113 AYMRGTDTEVDNFVIPSVLKACCLIPSFLLGQEVHGFVVKNGFHGDVFVCNALIMMYSEV 172

Query: 106 --------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
                   LF+ ++N  +VS + ++  +  + L  +A+ L        + P+ + M+++ 
Sbjct: 173 GSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLRDMHVMRVKPSEIGMISIT 232

Query: 158 RGCVALGSRALCELIHGLTIKLGLI--LDVSVNNSVLDMYSCLMDLDAAIQIFREMECKD 215
                L    L + +H   ++ G      V +  +++DMY    +L  A ++F  +    
Sbjct: 233 HVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKAS 292

Query: 216 VISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
           +ISWT M+  ++      + +++F +M    +  + + +L+L+      G L+ GK LHA
Sbjct: 293 IISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELGKLLHA 352

Query: 276 QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
             +  G    L L+ + I MY KCGD+ S+RSVF+    K L+ W+A+IS Y QN C  E
Sbjct: 353 FTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDE 412

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLI 395
           A + F+ M        +  T+VS+L    +  +LE+   +H    + G      ++   +
Sbjct: 413 AFDIFVHMTGCGIRP-NERTMVSLLMICAKAGSLEMGKWIHSYIDKQGIKGDMILKTSFV 471

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
             Y+ CG++D A+ +F E    RD+  WN +I G+ ++GHGE AL L+ +M   G  P+ 
Sbjct: 472 DMYANCGDIDTAHRLFAE-ATDRDISMWNAMISGFAMHGHGEAALELFEEMEALGVTPND 530

Query: 456 STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAG 515
            T++  L+AC H+GL  +G  +F++M+ E    P  EHYGC+VDLL RAG L +A  L  
Sbjct: 531 ITFIGALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAGLLDEAHELIK 590

Query: 516 KLLEGMGPNI--WRALLSGCVLH---------------------------------VGRF 540
            +   M PNI  + + L+ C LH                                   R+
Sbjct: 591 SM--PMRPNIAVFGSFLAACKLHKNIKLGEWAAKQFLSLEPHKSGYNVLMSNIYASANRW 648

Query: 541 QDAEALRSGSQKKGIIKIPGIS 562
            D   +R   + +GI+K PG+S
Sbjct: 649 GDVAYIRRAMKDEGIVKEPGVS 670



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 111/449 (24%), Positives = 215/449 (47%), Gaps = 26/449 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L+  Y + G +  A  LFD+I  K+VVSWS +I  Y  +G  ++++     M 
Sbjct: 158 DVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLRDMH 217

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG---------------------- 101
           +  + P+   M+ +    A L +L+L +++H  +++ G                      
Sbjct: 218 VMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCEN 277

Query: 102 --LESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                 +F+GL    ++S  A++A +I+     + V LF    G G+ PN +TML++++ 
Sbjct: 278 LAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKE 337

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C   G+  L +L+H  T++ G  L + +  + +DMY    D+ +A  +F   + KD++ W
Sbjct: 338 CGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMW 397

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           + M+  +       +A  IF  M    I  +   +++L+ + A  G L+ GK +H+ +  
Sbjct: 398 SAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDK 457

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G++ ++ L  S + MY+ CGD+D++  +F + T++ +  W A+ISG+  +G    AL  
Sbjct: 458 QGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDISMWNAMISGFAMHGHGEAALEL 517

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQL-HGIAFEAGFPRYRSVQNCLISSY 398
           F +M        D IT +  L A      L+   +L H +  E GF        C++   
Sbjct: 518 FEEMEALGVTPND-ITFIGALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLL 576

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
            + G +D A+ + + M    ++  + + +
Sbjct: 577 GRAGLLDEAHELIKSMPMRPNIAVFGSFL 605


>gi|225447243|ref|XP_002272819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Vitis vinifera]
          Length = 633

 Score =  239 bits (610), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 158/553 (28%), Positives = 270/553 (48%), Gaps = 70/553 (12%)

Query: 73  TMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-----------------------LFEG 109
           T   VL    GLQ       IH  ++K GLE D                       +F+G
Sbjct: 68  TCTKVLAFNHGLQ-------IHAHVIKSGLEFDRFVGNSLLTLYFKLGTDFPETRKVFDG 120

Query: 110 LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALC 169
           L    ++S  ++++G++       ++ LF      G+ PNA T+  VI+ C  LG   L 
Sbjct: 121 LFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKACSELGDLKLG 180

Query: 170 ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDF 229
            + HG+ +  G   +  + ++++DM+     LD A Q+F E+   D I WT ++      
Sbjct: 181 RIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDELLEPDAICWTSIISALTRN 240

Query: 230 EYAGDALKIFREMRKSRIIC-DTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
           ++  +AL+ F  M++   +C D      +++    LG LK+GK++HA+V+  G    + +
Sbjct: 241 DFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVVV 300

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
            +S++ MY KCG +  S+ +F+++  K+ VSW+A++ GY QNG  +  +  F KM     
Sbjct: 301 ESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKM----- 355

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
           + VD     +IL     LAA+    ++H      G  R   V++ L+  Y+KCG ++ A 
Sbjct: 356 EKVDLYCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVESALVDLYAKCGCIEYAQ 415

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
            +F++M  +R++++WN++I G+  NG GE AL ++++M + G  PD  +++ IL AC H 
Sbjct: 416 TIFDQMP-VRNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFACSHR 474

Query: 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRA 528
           GL ++G   F  M ++  +K   EHY C+VDLL RAG L +A  L          ++W A
Sbjct: 475 GLVDEGREYFISMTKDYGIKVGIEHYSCMVDLLGRAGLLEEAEILIETSDFRDDSSLWAA 534

Query: 529 LLSGCVL---------------------------------HVGRFQDAEALRSGSQKKGI 555
           LL  C                                    VGR+ DA  +R   + +G+
Sbjct: 535 LLGACTTCTNYEIAERIAKRVMELEPDYHLSYVLLANVYKAVGRWNDALRIRRLMKDRGV 594

Query: 556 IKIPGISFLNSTS 568
            K+PG S++ + +
Sbjct: 595 NKMPGKSWIETKN 607



 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 130/509 (25%), Positives = 239/509 (46%), Gaps = 41/509 (8%)

Query: 3   IDPYNSSKLLSNYFKSG-KIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
            D +  + LL+ YFK G    E   +FD +  K+V+SW+ +I GY   G    S++ F  
Sbjct: 92  FDRFVGNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWK 151

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------- 105
           M+  G+ PN+FT+  V+ A + L +L+L R  HG+++  G +S+                
Sbjct: 152 MLAYGVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCA 211

Query: 106 ------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLF-NFFRGSGLVPNAVTMLTVIR 158
                 LF+ L  P  +   +I++    N  F +A+  F +  R  G+ P+  T  TV+ 
Sbjct: 212 LDDARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLT 271

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C  LG     + +H   I  G   +V V +S++DMY     +  + +IF  M  K+ +S
Sbjct: 272 ACGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVS 331

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           W+ ++G +         ++IFR+M K  + C       ++   A L  +++GK++H Q +
Sbjct: 332 WSALLGGYCQNGDFKSVIQIFRKMEKVDLYC----FGTILRTCAGLAAVRQGKEVHCQYI 387

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
             G   ++ + ++++ +Y+KCG ++ ++++F+Q+  ++L++W ++I G+ QNG   EAL 
Sbjct: 388 RKGGWRDVIVESALVDLYAKCGCIEYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALR 447

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALE-----ICLQLHGIAFEAGFPRYRSVQNC 393
            F +M +E     D I+ + IL A      ++               + G   Y    +C
Sbjct: 448 IFNQMVKEGIKP-DYISFIGILFACSHRGLVDEGREYFISMTKDYGIKVGIEHY----SC 502

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           ++    + G ++ A I+ E   F  D   W  ++       + E A  +  ++ E    P
Sbjct: 503 MVDLLGRAGLLEEAEILIETSDFRDDSSLWAALLGACTTCTNYEIAERIAKRVMELE--P 560

Query: 454 DSS-TYLSILNACGHAGLTNDGLVIFNQM 481
           D   +Y+ + N     G  ND L I   M
Sbjct: 561 DYHLSYVLLANVYKAVGRWNDALRIRRLM 589



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 145/304 (47%), Gaps = 14/304 (4%)

Query: 235 ALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIA 294
           AL++ + +    I    V   +L+     +     G Q+HA V+  GL+ +  + NS++ 
Sbjct: 43  ALQLLKSIDPGEISAKPVLYASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRFVGNSLLT 102

Query: 295 MYSKCG-DLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDS 353
           +Y K G D   +R VF+ +  K ++SWT++ISGYV+ G    +L  F KM     +  ++
Sbjct: 103 LYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEP-NA 161

Query: 354 ITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEE 413
            TL +++ A  EL  L++    HG+    GF     + + LI  + +   +D A  +F+E
Sbjct: 162 FTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDE 221

Query: 414 MGFLRDVVSWNTIIYGYGVNGHGETALALYHKMT-ETGEVPDSSTYLSILNACGHAGLTN 472
           +    D + W +II     N   + AL  ++ M  + G  PD  T+ ++L ACG+ G   
Sbjct: 222 L-LEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLK 280

Query: 473 DGLVIFNQMIEE----NKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRA 528
            G  +  ++I      N V  S      +VD+  + G + ++  +  ++      + W A
Sbjct: 281 QGKEVHAKVITTGFCGNVVVESS-----LVDMYGKCGSVGESQRIFDRMPIKNSVS-WSA 334

Query: 529 LLSG 532
           LL G
Sbjct: 335 LLGG 338


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  239 bits (610), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 172/572 (30%), Positives = 278/572 (48%), Gaps = 70/572 (12%)

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY----- 114
           M+   + PN++T    L A + L +    R+IH   +  GL++DLF    L + Y     
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 115 ---------------LVSCNAIVAGFINNKLFQQAV--LLFNFFRGSGLVPNAVTMLTVI 157
                          LV+ NA++AG+ ++ ++  AV  LL    +   L PNA T++ ++
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALL 120

Query: 158 RGCVALGSRALCELIHGLTI----------KLGLILDVSVNNSVLDMYSCLMDLDAAIQI 207
                 G+ A    +H   I          K  L   V +  ++LDMY+    L  A ++
Sbjct: 121 PLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRV 180

Query: 208 FREMECKDVISWTRMMGLFVDFEYAGDALKIFREM-RKSRIICDTVALLNLISVNAILGD 266
           F  M  ++ ++W+ ++G FV       A  +F+ M  +        ++ + +   A L  
Sbjct: 181 FDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDH 240

Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISG 326
           L+ G+QLHA +   G+ ++L   NS+++MY+K G +D + ++F+++  K  VS++A++SG
Sbjct: 241 LRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSG 300

Query: 327 YVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPR 386
           YVQNG A EA   F KM+    +  D+ T+VS++ A   LAAL+     HG     G   
Sbjct: 301 YVQNGRAEEAFLVFKKMQACNVEP-DAATMVSLIPACSHLAALQHGRCSHGSVIIRGLAS 359

Query: 387 YRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM 446
             S+ N LI  Y+KCG +DL+  VF  M   RD+VSWNT+I GYG++G G+ A AL+ +M
Sbjct: 360 ETSICNALIDMYAKCGRIDLSRQVFNMMPS-RDIVSWNTMIAGYGIHGLGKEATALFLEM 418

Query: 447 TETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGC 506
              G  PD  T++ +L+AC H+GL  +G   F+ M     + P  EHY C+VDLL+R G 
Sbjct: 419 NNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGF 478

Query: 507 LSDASGLAGKLLEGMGPNIWRALLSGCVLH------------------------------ 536
           L +A      +       +W ALL  C ++                              
Sbjct: 479 LDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNI 538

Query: 537 ---VGRFQDAEALRSGSQKKGIIKIPGISFLN 565
               GRF +A  +R   + +G  K PG S++ 
Sbjct: 539 YSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIE 570



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/362 (25%), Positives = 163/362 (45%), Gaps = 41/362 (11%)

Query: 2   CIDPYNSSK------------LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSIN 49
           C+ P  +SK            LL  Y K G +  A  +FD +P +N V+WS +I G+ + 
Sbjct: 143 CLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLC 202

Query: 50  GFHEKSMKAFSHMMLSGLLPNSFTMVG-VLVAAAGLQNLELARSIHGLMVKFGLESD--- 105
               ++   F  M+  GL   S T +   L A A L +L +   +H L+ K G+ +D   
Sbjct: 203 SRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTA 262

Query: 106 -------------------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGL 146
                              LF+ +     VS +A+V+G++ N   ++A L+F   +   +
Sbjct: 263 GNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNV 322

Query: 147 VPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQ 206
            P+A TM+++I  C  L +       HG  I  GL  + S+ N+++DMY+    +D + Q
Sbjct: 323 EPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQ 382

Query: 207 IFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGD 266
           +F  M  +D++SW  M+  +       +A  +F EM       D V  + L+S  +  G 
Sbjct: 383 VFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGL 442

Query: 267 LKRGKQLHAQVVLG---GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVS-WTA 322
           +  GK  H   V+G   GL   +     ++ + S+ G LD +      +  ++ V  W A
Sbjct: 443 VIEGK--HWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVA 500

Query: 323 II 324
           ++
Sbjct: 501 LL 502



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 111/251 (44%), Gaps = 46/251 (18%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + LLS Y K+G I +A  LFDE+  K+ VS+S ++ GY  NG  E++   F  M    + 
Sbjct: 264 NSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVE 323

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------L 106
           P++ TMV ++ A + L  L+  R  HG ++  GL S+                      +
Sbjct: 324 PDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQV 383

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC-----V 161
           F  + +  +VS N ++AG+  + L ++A  LF      G  P+ VT + ++  C     V
Sbjct: 384 FNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLV 443

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMD-------LDAAIQIFREMECK 214
             G      + HG  +              ++ Y C++D       LD A +  + M  +
Sbjct: 444 IEGKHWFHVMGHGYGL-----------TPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLR 492

Query: 215 -DVISWTRMMG 224
            DV  W  ++G
Sbjct: 493 ADVRVWVALLG 503


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  239 bits (610), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 172/572 (30%), Positives = 278/572 (48%), Gaps = 70/572 (12%)

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY----- 114
           M+   + PN++T    L A + L +    R+IH   +  GL++DLF    L + Y     
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 115 ---------------LVSCNAIVAGFINNKLFQQAV--LLFNFFRGSGLVPNAVTMLTVI 157
                          LV+ NA++AG+ ++ ++  AV  LL    +   L PNA T++ ++
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALL 120

Query: 158 RGCVALGSRALCELIHGLTI----------KLGLILDVSVNNSVLDMYSCLMDLDAAIQI 207
                 G+ A    +H   I          K  L   V +  ++LDMY+    L  A ++
Sbjct: 121 PLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRV 180

Query: 208 FREMECKDVISWTRMMGLFVDFEYAGDALKIFREM-RKSRIICDTVALLNLISVNAILGD 266
           F  M  ++ ++W+ ++G FV       A  +F+ M  +        ++ + +   A L  
Sbjct: 181 FDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDH 240

Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISG 326
           L+ G+QLHA +   G+ ++L   NS+++MY+K G +D + ++F+++  K  VS++A++SG
Sbjct: 241 LRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSG 300

Query: 327 YVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPR 386
           YVQNG A EA   F KM+    +  D+ T+VS++ A   LAAL+     HG     G   
Sbjct: 301 YVQNGRAEEAFLVFKKMQACNVEP-DAATMVSLIPACSHLAALQHGRCSHGSVIIRGLAS 359

Query: 387 YRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM 446
             S+ N LI  Y+KCG +DL+  VF  M   RD+VSWNT+I GYG++G G+ A AL+ +M
Sbjct: 360 ETSICNALIDMYAKCGRIDLSRQVFNMMPS-RDIVSWNTMIAGYGIHGLGKEATALFLEM 418

Query: 447 TETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGC 506
              G  PD  T++ +L+AC H+GL  +G   F+ M     + P  EHY C+VDLL+R G 
Sbjct: 419 NNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGF 478

Query: 507 LSDASGLAGKLLEGMGPNIWRALLSGCVLH------------------------------ 536
           L +A      +       +W ALL  C ++                              
Sbjct: 479 LDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNI 538

Query: 537 ---VGRFQDAEALRSGSQKKGIIKIPGISFLN 565
               GRF +A  +R   + +G  K PG S++ 
Sbjct: 539 YSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIE 570



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/362 (25%), Positives = 163/362 (45%), Gaps = 41/362 (11%)

Query: 2   CIDPYNSSK------------LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSIN 49
           C+ P  +SK            LL  Y K G +  A  +FD +P +N V+WS +I G+ + 
Sbjct: 143 CLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLC 202

Query: 50  GFHEKSMKAFSHMMLSGLLPNSFTMVG-VLVAAAGLQNLELARSIHGLMVKFGLESD--- 105
               ++   F  M+  GL   S T +   L A A L +L +   +H L+ K G+ +D   
Sbjct: 203 SRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTA 262

Query: 106 -------------------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGL 146
                              LF+ +     VS +A+V+G++ N   ++A L+F   +   +
Sbjct: 263 GNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNV 322

Query: 147 VPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQ 206
            P+A TM+++I  C  L +       HG  I  GL  + S+ N+++DMY+    +D + Q
Sbjct: 323 EPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQ 382

Query: 207 IFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGD 266
           +F  M  +D++SW  M+  +       +A  +F EM       D V  + L+S  +  G 
Sbjct: 383 VFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGL 442

Query: 267 LKRGKQLHAQVVLG---GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVS-WTA 322
           +  GK  H   V+G   GL   +     ++ + S+ G LD +      +  ++ V  W A
Sbjct: 443 VIEGK--HWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVA 500

Query: 323 II 324
           ++
Sbjct: 501 LL 502



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 111/251 (44%), Gaps = 46/251 (18%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + LLS Y K+G I +A  LFDE+  K+ VS+S ++ GY  NG  E++   F  M    + 
Sbjct: 264 NSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVE 323

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------L 106
           P++ TMV ++ A + L  L+  R  HG ++  GL S+                      +
Sbjct: 324 PDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQV 383

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC-----V 161
           F  + +  +VS N ++AG+  + L ++A  LF      G  P+ VT + ++  C     V
Sbjct: 384 FNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLV 443

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMD-------LDAAIQIFREMECK 214
             G      + HG  +              ++ Y C++D       LD A +  + M  +
Sbjct: 444 IEGKHWFHVMGHGYGL-----------TPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLR 492

Query: 215 -DVISWTRMMG 224
            DV  W  ++G
Sbjct: 493 ADVRVWVALLG 503


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  239 bits (610), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 157/529 (29%), Positives = 260/529 (49%), Gaps = 37/529 (6%)

Query: 35   NVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIH 94
            N+ +W+  +  +   G    ++  F  ++ S +  +S T+V +L AA G  +L+L   IH
Sbjct: 858  NIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIH 917

Query: 95   GLMVK--FGLESDLFEGLKNPY--------------------LVSCNAIVAGFINNKLFQ 132
             L++K  F     +   L N Y                    L+S N +++ +  N L  
Sbjct: 918  ALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEM 977

Query: 133  QAVLLFNFFRGSGLVPNAVTMLTVIRGC--------VALGSRALCELIHGLTIKLGLILD 184
            +A+  F      GL P+  T+ +V+R C          LGS+     +H   IK G+I D
Sbjct: 978  EAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQ-----VHVYAIKCGIIND 1032

Query: 185  VSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRK 244
              V+ +++D+YS    +D A  +       D+ SW  +M  ++    +  AL+ F  M +
Sbjct: 1033 SFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHE 1092

Query: 245  SRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDS 304
              I  D + L   I  +  L +LK+GKQ+ A  +  G  ++L +S+ ++ MY KCGD+ +
Sbjct: 1093 MGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPN 1152

Query: 305  SRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASG 364
            +  +F +I+    V+WT +ISGY++NG    AL+ +  MR       D  T  +++ AS 
Sbjct: 1153 ALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQP-DEYTFATLIKASS 1211

Query: 365  ELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWN 424
             L ALE   Q+H    +  +     V   L+  Y KCG+V  AY VF +M  +R VV WN
Sbjct: 1212 CLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMD-VRKVVFWN 1270

Query: 425  TIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEE 484
             ++ G   +GH + AL L+  M   G  PD  T++ +L+AC H+GL ++    F+ M + 
Sbjct: 1271 AMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKT 1330

Query: 485  NKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGC 533
              + P  EHY C+VD L RAG + +A  +   +      +++RALL  C
Sbjct: 1331 YGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGAC 1379



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 151/559 (27%), Positives = 268/559 (47%), Gaps = 17/559 (3%)

Query: 3    IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
            +D + S  L++ Y K G + +A  LFD++PE++ V W++++  Y  N F +++++ FS  
Sbjct: 750  LDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAF 809

Query: 63   MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIV 122
              SG  P+ F+ +  ++      ++   R  H   VK      +F   +   + + N  +
Sbjct: 810  HRSGFXPD-FSNLHCVIGGVN-SDVSNNRKRHAEQVK-AYAMKMFPFDQGSNIFAWNKKL 866

Query: 123  AGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLI 182
              F++      A+  F     S +  ++VT++ ++   V      L E IH L IK    
Sbjct: 867  TEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFA 926

Query: 183  LDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREM 242
              V V+NS+++MYS    + AA + F      D+ISW  M+  +       +A+  FR++
Sbjct: 927  PVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDL 986

Query: 243  RKSRIICDTVALLNLISVNAILGD----LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSK 298
             +  +  D   L +++   +  GD       G Q+H   +  G+ ++  +S ++I +YSK
Sbjct: 987  LRDGLKPDQFTLASVLRACST-GDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSK 1045

Query: 299  CGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVS 358
             G +D +  + +   +  L SW AI+ GY+++  +R+AL  F  M  E    +D ITL +
Sbjct: 1046 GGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLM-HEMGIPIDEITLAT 1104

Query: 359  ILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLR 418
             + ASG L  L+   Q+   A + GF     V + ++  Y KCG++  A  +F E+    
Sbjct: 1105 AIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEIS-RP 1163

Query: 419  DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIF 478
            D V+W T+I GY  NG  + AL++YH M  +G  PD  T+ +++ A         G  I 
Sbjct: 1164 DEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIH 1223

Query: 479  NQMIEENKVKPSQEHY--GCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
              ++   K+  S +H+    +VD+  + G + DA  +  K ++      W A+L G   H
Sbjct: 1224 ANVV---KLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRK-MDVRKVVFWNAMLLGLAQH 1279

Query: 537  VGRFQDAEALRSGSQKKGI 555
             G   +A  L    Q  GI
Sbjct: 1280 -GHVDEALNLFRTMQSNGI 1297



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 129/486 (26%), Positives = 221/486 (45%), Gaps = 36/486 (7%)

Query: 8    SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
            S+ L++ Y K+G +  AE  F   PE +++SW+ +I  Y+ N    +++  F  ++  GL
Sbjct: 932  SNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGL 991

Query: 68   LPNSFTMVGVLVAAAGLQNLE---LARSIHGLMVKFGLESDLF----------------- 107
             P+ FT+  VL A +     E   L   +H   +K G+ +D F                 
Sbjct: 992  KPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDE 1051

Query: 108  -----EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA 162
                  G  +  L S NAI+ G+I +   ++A+  F+     G+  + +T+ T I+    
Sbjct: 1052 AEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGC 1111

Query: 163  LGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
            L +    + I    IKLG   D+ V++ VLDMY    D+  A+++F E+   D ++WT M
Sbjct: 1112 LINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTM 1171

Query: 223  MGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL 282
            +  +++      AL ++  MR S +  D      LI  ++ L  L++GKQ+HA VV    
Sbjct: 1172 ISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDY 1231

Query: 283  QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
              +  +  S++ MY KCG +  +  VF ++  + +V W A++ G  Q+G   EALN F  
Sbjct: 1232 SLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRT 1291

Query: 343  MRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ-----NCLISS 397
            M Q      D +T + +L+A           +     F+A F  Y         +CL+ +
Sbjct: 1292 M-QSNGIQPDKVTFIGVLSACSHSGLFSEAYKY----FDAMFKTYGITPEIEHYSCLVDA 1346

Query: 398  YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
              + G +  A  V   M F      +  ++      G  ETA  +  K+    +  DSS 
Sbjct: 1347 LGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKLLAL-DPSDSSA 1405

Query: 458  YLSILN 463
            Y+ + N
Sbjct: 1406 YVLLSN 1411



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 128/504 (25%), Positives = 220/504 (43%), Gaps = 79/504 (15%)

Query: 4    DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYS--INGFHEKSMKAFSH 61
            D Y ++ L++ Y K G +  A  +FD+  ++++V+W+ ++  Y+   +  +E  ++ F  
Sbjct: 645  DRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLEGFR- 703

Query: 62   MMLSGLLPN-SFTMVGVLVAAAGLQN-----LELARSIHGLMVKFGLESDLF--EGLKNP 113
              L GLL    F++  + +A           ++++ ++HG  VK G E DLF    L N 
Sbjct: 704  --LFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNI 761

Query: 114  Y--------------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTM 153
            Y                     V  N ++  ++ N    +A+  F+ F  SG  P+   +
Sbjct: 762  YCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPDFSNL 821

Query: 154  LTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNN----SVLDMYSCLMDLDAAIQIFR 209
              VI G  +                     DVS N       +  Y        A+++F 
Sbjct: 822  HCVIGGVNS---------------------DVSNNRKRHAEQVKAY--------AMKMFP 852

Query: 210  EMECKDVISWTRMMGLFVDFEYAGD---ALKIFREMRKSRIICDTVALLNLISVNAILGD 266
              +  ++ +W + +    +F +AG    A+  F+ + +S I  D+V L+ ++S      D
Sbjct: 853  FDQGSNIFAWNKKL---TEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADD 909

Query: 267  LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISG 326
            L  G+Q+HA V+       + +SNS++ MYSK G + ++   F    E  L+SW  +IS 
Sbjct: 910  LDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISS 969

Query: 327  YVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTA---SGELAALEICLQLHGIAFEAG 383
            Y QN    EA+  F  + ++     D  TL S+L A     E     +  Q+H  A + G
Sbjct: 970  YAQNNLEMEAICTFRDLLRDGLKP-DQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCG 1028

Query: 384  FPRYRSVQNCLISSYSKCGNVDLA-YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALAL 442
                  V   LI  YSK G +D A +++  +  F  D+ SWN I++GY  +     AL  
Sbjct: 1029 IINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDF--DLASWNAIMFGYIKSNKSRKALEH 1086

Query: 443  YHKMTETGEVPDSSTYLSILNACG 466
            +  M E G   D  T  + + A G
Sbjct: 1087 FSLMHEMGIPIDEITLATAIKASG 1110



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 95/409 (23%), Positives = 179/409 (43%), Gaps = 28/409 (6%)

Query: 4    DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
            D + S+ L+  Y K GK+ EAE L     + ++ SW+ ++ GY  +    K+++ FS M 
Sbjct: 1032 DSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMH 1091

Query: 64   LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
              G+  +  T+   + A+  L NL+  + I    +K G  +D                  
Sbjct: 1092 EMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMP 1151

Query: 106  ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                LF  +  P  V+   +++G+I N     A+ +++  R SG+ P+  T  T+I+   
Sbjct: 1152 NALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASS 1211

Query: 162  ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
             L +    + IH   +KL   LD  V  S++DMY     +  A ++FR+M+ + V+ W  
Sbjct: 1212 CLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNA 1271

Query: 222  MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG-KQLHAQVVLG 280
            M+       +  +AL +FR M+ + I  D V  + ++S  +  G      K   A     
Sbjct: 1272 MLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTY 1331

Query: 281  GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVS-WTAIISGYVQNGCAREALNQ 339
            G+  E+   + ++    + G +  + +V   +  K+  S + A++      G A  A   
Sbjct: 1332 GITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRV 1391

Query: 340  FIKMRQ-EKTDSVDSITLVSILTAS---GELAALEICLQLHGIAFEAGF 384
              K+   + +DS   + L +I  AS    ++      ++L  +  + GF
Sbjct: 1392 ADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGF 1440



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 97/414 (23%), Positives = 181/414 (43%), Gaps = 45/414 (10%)

Query: 57   KAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLV 116
            +A + ++ SG LP+ +    ++   +   +L  AR +             F+   +  LV
Sbjct: 632  RAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQV-------------FDKSSDRDLV 678

Query: 117  SCNAIVAGFIN--NKLFQ---QAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCEL 171
            + N+I+A +    +  ++   +   LF   R  G     +T+  +++ C+  G   + E 
Sbjct: 679  TWNSILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSET 738

Query: 172  IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
            +HG  +K+G  LD+ V+ +++++Y     +  A  +F +M  +D + W  M+  +V+  +
Sbjct: 739  VHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSF 798

Query: 232  AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
              +AL+ F    +S    D   L  +I    +  D+   ++ HA+               
Sbjct: 799  QDEALRFFSAFHRSGFXPDFSNLHCVI--GGVNSDVSNNRKRHAE--------------Q 842

Query: 292  IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
            + A   K    D   ++F         +W   ++ ++  G    A++ F K     T   
Sbjct: 843  VKAYAMKMFPFDQGSNIF---------AWNKKLTEFLHAGQIVAAIDCF-KTLLRSTIGH 892

Query: 352  DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVF 411
            DS+TLV IL+A+     L++  Q+H +  ++ F     V N L++ YSK G V  A   F
Sbjct: 893  DSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTF 952

Query: 412  EEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
                 L D++SWNT+I  Y  N     A+  +  +   G  PD  T  S+L AC
Sbjct: 953  INSPEL-DLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRAC 1005



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 103/197 (52%), Gaps = 5/197 (2%)

Query: 264 LGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAI 323
           + DLK GK+ HA++V  G   +  L+N++I MYSKCG L S+R VF++ +++ LV+W +I
Sbjct: 624 MADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSI 683

Query: 324 ISGYVQ--NGCAREALNQF--IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIA 379
           ++ Y Q  +      L  F    + +E   S+  +TL  +L        +++   +HG A
Sbjct: 684 LAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYA 743

Query: 380 FEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETA 439
            + GF     V   L++ Y K G V  A ++F++M   RD V WN ++  Y  N   + A
Sbjct: 744 VKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMP-ERDAVLWNVMLKAYVENSFQDEA 802

Query: 440 LALYHKMTETGEVPDSS 456
           L  +     +G  PD S
Sbjct: 803 LRFFSAFHRSGFXPDFS 819



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 92/188 (48%), Gaps = 5/188 (2%)

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
           R  +A+    L +  H   +  G + D  + N+++ MYS    L +A Q+F +   +D++
Sbjct: 619 RSAIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLV 678

Query: 218 SWTRMMGLFVDF-----EYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQ 272
           +W  ++  +  F     E   +  ++F  +R+       + L  L+ +  + G ++  + 
Sbjct: 679 TWNSILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSET 738

Query: 273 LHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC 332
           +H   V  G + +L +S +++ +Y K G +  +R +F+++ E+  V W  ++  YV+N  
Sbjct: 739 VHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSF 798

Query: 333 AREALNQF 340
             EAL  F
Sbjct: 799 QDEALRFF 806



 Score = 43.9 bits (102), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 45/78 (57%)

Query: 3    IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
            +D +  + L+  Y K G +++A  +F ++  + VV W+ ++ G + +G  ++++  F  M
Sbjct: 1233 LDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTM 1292

Query: 63   MLSGLLPNSFTMVGVLVA 80
              +G+ P+  T +GVL A
Sbjct: 1293 QSNGIQPDKVTFIGVLSA 1310


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  239 bits (610), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 157/529 (29%), Positives = 260/529 (49%), Gaps = 37/529 (6%)

Query: 35   NVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIH 94
            N+ +W+  +  +   G    ++  F  ++ S +  +S T+V +L AA G  +L+L   IH
Sbjct: 858  NIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIH 917

Query: 95   GLMVK--FGLESDLFEGLKNPY--------------------LVSCNAIVAGFINNKLFQ 132
             L++K  F     +   L N Y                    L+S N +++ +  N L  
Sbjct: 918  ALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEM 977

Query: 133  QAVLLFNFFRGSGLVPNAVTMLTVIRGC--------VALGSRALCELIHGLTIKLGLILD 184
            +A+  F      GL P+  T+ +V+R C          LGS+     +H   IK G+I D
Sbjct: 978  EAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQ-----VHVYAIKCGIIND 1032

Query: 185  VSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRK 244
              V+ +++D+YS    +D A  +       D+ SW  +M  ++    +  AL+ F  M +
Sbjct: 1033 SFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHE 1092

Query: 245  SRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDS 304
              I  D + L   I  +  L +LK+GKQ+ A  +  G  ++L +S+ ++ MY KCGD+ +
Sbjct: 1093 MGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPN 1152

Query: 305  SRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASG 364
            +  +F +I+    V+WT +ISGY++NG    AL+ +  MR       D  T  +++ AS 
Sbjct: 1153 ALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQP-DEYTFATLIKASS 1211

Query: 365  ELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWN 424
             L ALE   Q+H    +  +     V   L+  Y KCG+V  AY VF +M  +R VV WN
Sbjct: 1212 CLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMD-VRKVVFWN 1270

Query: 425  TIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEE 484
             ++ G   +GH + AL L+  M   G  PD  T++ +L+AC H+GL ++    F+ M + 
Sbjct: 1271 AMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKT 1330

Query: 485  NKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGC 533
              + P  EHY C+VD L RAG + +A  +   +      +++RALL  C
Sbjct: 1331 YGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGAC 1379



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 151/559 (27%), Positives = 268/559 (47%), Gaps = 17/559 (3%)

Query: 3    IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
            +D + S  L++ Y K G + +A  LFD++PE++ V W++++  Y  N F +++++ FS  
Sbjct: 750  LDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAF 809

Query: 63   MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIV 122
              SG  P+ F+ +  ++      ++   R  H   VK      +F   +   + + N  +
Sbjct: 810  HRSGFFPD-FSNLHCVIGGVN-SDVSNNRKRHAEQVK-AYAMKMFPFDQGSNIFAWNKKL 866

Query: 123  AGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLI 182
              F++      A+  F     S +  ++VT++ ++   V      L E IH L IK    
Sbjct: 867  TEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFA 926

Query: 183  LDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREM 242
              V V+NS+++MYS    + AA + F      D+ISW  M+  +       +A+  FR++
Sbjct: 927  PVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDL 986

Query: 243  RKSRIICDTVALLNLISVNAILGD----LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSK 298
             +  +  D   L +++   +  GD       G Q+H   +  G+ ++  +S ++I +YSK
Sbjct: 987  LRDGLKPDQFTLASVLRACST-GDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSK 1045

Query: 299  CGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVS 358
             G +D +  + +   +  L SW AI+ GY+++  +R+AL  F  M  E    +D ITL +
Sbjct: 1046 GGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLM-HEMGIPIDEITLAT 1104

Query: 359  ILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLR 418
             + ASG L  L+   Q+   A + GF     V + ++  Y KCG++  A  +F E+    
Sbjct: 1105 AIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEIS-RP 1163

Query: 419  DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIF 478
            D V+W T+I GY  NG  + AL++YH M  +G  PD  T+ +++ A         G  I 
Sbjct: 1164 DEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIH 1223

Query: 479  NQMIEENKVKPSQEHY--GCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
              ++   K+  S +H+    +VD+  + G + DA  +  K ++      W A+L G   H
Sbjct: 1224 ANVV---KLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRK-MDVRKVVFWNAMLLGLAQH 1279

Query: 537  VGRFQDAEALRSGSQKKGI 555
             G   +A  L    Q  GI
Sbjct: 1280 -GHVDEALNLFRTMQSNGI 1297



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 129/486 (26%), Positives = 221/486 (45%), Gaps = 36/486 (7%)

Query: 8    SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
            S+ L++ Y K+G +  AE  F   PE +++SW+ +I  Y+ N    +++  F  ++  GL
Sbjct: 932  SNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGL 991

Query: 68   LPNSFTMVGVLVAAAGLQNLE---LARSIHGLMVKFGLESDLF----------------- 107
             P+ FT+  VL A +     E   L   +H   +K G+ +D F                 
Sbjct: 992  KPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDE 1051

Query: 108  -----EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA 162
                  G  +  L S NAI+ G+I +   ++A+  F+     G+  + +T+ T I+    
Sbjct: 1052 AEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGC 1111

Query: 163  LGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
            L +    + I    IKLG   D+ V++ VLDMY    D+  A+++F E+   D ++WT M
Sbjct: 1112 LINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTM 1171

Query: 223  MGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL 282
            +  +++      AL ++  MR S +  D      LI  ++ L  L++GKQ+HA VV    
Sbjct: 1172 ISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDY 1231

Query: 283  QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
              +  +  S++ MY KCG +  +  VF ++  + +V W A++ G  Q+G   EALN F  
Sbjct: 1232 SLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRT 1291

Query: 343  MRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ-----NCLISS 397
            M Q      D +T + +L+A           +     F+A F  Y         +CL+ +
Sbjct: 1292 M-QSNGIQPDKVTFIGVLSACSHSGLFSEAYKY----FDAMFKTYGITPEIEHYSCLVDA 1346

Query: 398  YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
              + G +  A  V   M F      +  ++      G  ETA  +  K+    +  DSS 
Sbjct: 1347 LGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKLLAL-DPSDSSA 1405

Query: 458  YLSILN 463
            Y+ + N
Sbjct: 1406 YVLLSN 1411



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 128/504 (25%), Positives = 220/504 (43%), Gaps = 79/504 (15%)

Query: 4    DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYS--INGFHEKSMKAFSH 61
            D Y ++ L++ Y K G +  A  +FD+  ++++V+W+ ++  Y+   +  +E  ++ F  
Sbjct: 645  DRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLEGFR- 703

Query: 62   MMLSGLLPN-SFTMVGVLVAAAGLQN-----LELARSIHGLMVKFGLESDLF--EGLKNP 113
              L GLL    F++  + +A           ++++ ++HG  VK G E DLF    L N 
Sbjct: 704  --LFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNI 761

Query: 114  Y--------------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTM 153
            Y                     V  N ++  ++ N    +A+  F+ F  SG  P+   +
Sbjct: 762  YCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFFPDFSNL 821

Query: 154  LTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNN----SVLDMYSCLMDLDAAIQIFR 209
              VI G  +                     DVS N       +  Y        A+++F 
Sbjct: 822  HCVIGGVNS---------------------DVSNNRKRHAEQVKAY--------AMKMFP 852

Query: 210  EMECKDVISWTRMMGLFVDFEYAGD---ALKIFREMRKSRIICDTVALLNLISVNAILGD 266
              +  ++ +W + +    +F +AG    A+  F+ + +S I  D+V L+ ++S      D
Sbjct: 853  FDQGSNIFAWNKKL---TEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADD 909

Query: 267  LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISG 326
            L  G+Q+HA V+       + +SNS++ MYSK G + ++   F    E  L+SW  +IS 
Sbjct: 910  LDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISS 969

Query: 327  YVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTA---SGELAALEICLQLHGIAFEAG 383
            Y QN    EA+  F  + ++     D  TL S+L A     E     +  Q+H  A + G
Sbjct: 970  YAQNNLEMEAICTFRDLLRDGLKP-DQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCG 1028

Query: 384  FPRYRSVQNCLISSYSKCGNVDLA-YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALAL 442
                  V   LI  YSK G +D A +++  +  F  D+ SWN I++GY  +     AL  
Sbjct: 1029 IINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDF--DLASWNAIMFGYIKSNKSRKALEH 1086

Query: 443  YHKMTETGEVPDSSTYLSILNACG 466
            +  M E G   D  T  + + A G
Sbjct: 1087 FSLMHEMGIPIDEITLATAIKASG 1110



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 95/409 (23%), Positives = 179/409 (43%), Gaps = 28/409 (6%)

Query: 4    DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
            D + S+ L+  Y K GK+ EAE L     + ++ SW+ ++ GY  +    K+++ FS M 
Sbjct: 1032 DSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMH 1091

Query: 64   LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
              G+  +  T+   + A+  L NL+  + I    +K G  +D                  
Sbjct: 1092 EMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMP 1151

Query: 106  ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                LF  +  P  V+   +++G+I N     A+ +++  R SG+ P+  T  T+I+   
Sbjct: 1152 NALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASS 1211

Query: 162  ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
             L +    + IH   +KL   LD  V  S++DMY     +  A ++FR+M+ + V+ W  
Sbjct: 1212 CLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNA 1271

Query: 222  MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG-KQLHAQVVLG 280
            M+       +  +AL +FR M+ + I  D V  + ++S  +  G      K   A     
Sbjct: 1272 MLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTY 1331

Query: 281  GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVS-WTAIISGYVQNGCAREALNQ 339
            G+  E+   + ++    + G +  + +V   +  K+  S + A++      G A  A   
Sbjct: 1332 GITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRV 1391

Query: 340  FIKMRQ-EKTDSVDSITLVSILTAS---GELAALEICLQLHGIAFEAGF 384
              K+   + +DS   + L +I  AS    ++      ++L  +  + GF
Sbjct: 1392 ADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGF 1440



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 97/414 (23%), Positives = 181/414 (43%), Gaps = 45/414 (10%)

Query: 57   KAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLV 116
            +A + ++ SG LP+ +    ++   +   +L  AR +             F+   +  LV
Sbjct: 632  RAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQV-------------FDKSSDRDLV 678

Query: 117  SCNAIVAGFIN--NKLFQ---QAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCEL 171
            + N+I+A +    +  ++   +   LF   R  G     +T+  +++ C+  G   + E 
Sbjct: 679  TWNSILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSET 738

Query: 172  IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
            +HG  +K+G  LD+ V+ +++++Y     +  A  +F +M  +D + W  M+  +V+  +
Sbjct: 739  VHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSF 798

Query: 232  AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
              +AL+ F    +S    D   L  +I    +  D+   ++ HA+               
Sbjct: 799  QDEALRFFSAFHRSGFFPDFSNLHCVI--GGVNSDVSNNRKRHAE--------------Q 842

Query: 292  IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
            + A   K    D   ++F         +W   ++ ++  G    A++ F K     T   
Sbjct: 843  VKAYAMKMFPFDQGSNIF---------AWNKKLTEFLHAGQIVAAIDCF-KTLLRSTIGH 892

Query: 352  DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVF 411
            DS+TLV IL+A+     L++  Q+H +  ++ F     V N L++ YSK G V  A   F
Sbjct: 893  DSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTF 952

Query: 412  EEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
                 L D++SWNT+I  Y  N     A+  +  +   G  PD  T  S+L AC
Sbjct: 953  INSPEL-DLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRAC 1005



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 103/197 (52%), Gaps = 5/197 (2%)

Query: 264 LGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAI 323
           + DLK GK+ HA++V  G   +  L+N++I MYSKCG L S+R VF++ +++ LV+W +I
Sbjct: 624 MADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSI 683

Query: 324 ISGYVQ--NGCAREALNQF--IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIA 379
           ++ Y Q  +      L  F    + +E   S+  +TL  +L        +++   +HG A
Sbjct: 684 LAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYA 743

Query: 380 FEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETA 439
            + GF     V   L++ Y K G V  A ++F++M   RD V WN ++  Y  N   + A
Sbjct: 744 VKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMP-ERDAVLWNVMLKAYVENSFQDEA 802

Query: 440 LALYHKMTETGEVPDSS 456
           L  +     +G  PD S
Sbjct: 803 LRFFSAFHRSGFFPDFS 819



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 92/188 (48%), Gaps = 5/188 (2%)

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
           R  +A+    L +  H   +  G + D  + N+++ MYS    L +A Q+F +   +D++
Sbjct: 619 RSAIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLV 678

Query: 218 SWTRMMGLFVDF-----EYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQ 272
           +W  ++  +  F     E   +  ++F  +R+       + L  L+ +  + G ++  + 
Sbjct: 679 TWNSILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSET 738

Query: 273 LHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC 332
           +H   V  G + +L +S +++ +Y K G +  +R +F+++ E+  V W  ++  YV+N  
Sbjct: 739 VHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSF 798

Query: 333 AREALNQF 340
             EAL  F
Sbjct: 799 QDEALRFF 806



 Score = 43.9 bits (102), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 45/78 (57%)

Query: 3    IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
            +D +  + L+  Y K G +++A  +F ++  + VV W+ ++ G + +G  ++++  F  M
Sbjct: 1233 LDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTM 1292

Query: 63   MLSGLLPNSFTMVGVLVA 80
              +G+ P+  T +GVL A
Sbjct: 1293 QSNGIQPDKVTFIGVLSA 1310


>gi|224080081|ref|XP_002306009.1| predicted protein [Populus trichocarpa]
 gi|222848973|gb|EEE86520.1| predicted protein [Populus trichocarpa]
          Length = 870

 Score =  239 bits (610), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 173/602 (28%), Positives = 303/602 (50%), Gaps = 77/602 (12%)

Query: 11  LLSNYFKSGKI-KEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLP 69
           L+S Y K G + ++A   FD I EK+VVSW+ +I G++ N   E + + FS M+   + P
Sbjct: 171 LVSMYAKCGLVCQDAYAAFDSIDEKDVVSWNAIISGFAENNLMEDAFRLFSSMLKGQIKP 230

Query: 70  NSFTMVGVLVAAAGLQNL---ELARSIHGLMVKFG-LESD-------------------- 105
           N  T+  +L   A           + IHG +++   L +D                    
Sbjct: 231 NYTTLANILPVCASFDEYIAYWFGKEIHGYVLRHNELLADVFVWNALVSFYLRVGRVEEA 290

Query: 106 --LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLV-PNAVTMLTVIRGCVA 162
             LF  ++   LVS NAI+AG+ +N  + +A+ LF+      ++ P++VT+L +I  C  
Sbjct: 291 ELLFRRMELRDLVSWNAIIAGYASNGEWSKALELFHELLTLDMIEPDSVTLLCIIPACAQ 350

Query: 163 LGSRALCELIHGLTIKLGLIL-DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
             +  + ++IHG  ++  L+  D SV N+++  Y+   D++ A + F  +  +D+ISW  
Sbjct: 351 SRNLHVGKMIHGYVLRHPLLCEDTSVGNALVSFYAKCDDIEGAYETFFMISRRDLISWNS 410

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLIS--VNAILGDLKRGKQLHA---- 275
           M+   V+  Y    L++ R M       D+V +L+++   VN +  D  + K+ H+    
Sbjct: 411 MLDALVESGYNTWFLELLRWMLSEGTTPDSVTILSVVHFCVNVLKED--KVKEAHSYSIR 468

Query: 276 -QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE-KSLVSWTAIISGYV----- 328
            +++      E  + N+I+  Y+KCG+++ +  VF  ++E ++LV++ AIISGY+     
Sbjct: 469 HRLLASKFDVEPTIGNAILDAYAKCGNIEYASKVFQSLSENRNLVTFKAIISGYINCGLL 528

Query: 329 --------------------------QNGCAREALNQFIKMRQEKTDSVDSITLVSILTA 362
                                     +N C+ +AL  F ++ Q      D++T++S+L A
Sbjct: 529 DEAYITFNRMPSSDLSVWNLMVRLYAENDCSSQALGLFHEL-QAHGIKPDAVTIMSLLPA 587

Query: 363 SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVS 422
             E+A++++  Q HG A  + F     +   L   Y+KCG++  A+ +F+ +   +D++ 
Sbjct: 588 CAEMASVQLIKQCHGYAIRSCFGDLH-LDGALQDVYAKCGSIGYAFKLFQLIPN-KDLII 645

Query: 423 WNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMI 482
           +  +I GY ++G G+ AL  +  M E G  PD     ++L+AC HAGL ++GL IF  + 
Sbjct: 646 FTAMIRGYAMHGMGKEALGTFFHMIELGIKPDHVIITTVLSACSHAGLVDEGLNIFYSIE 705

Query: 483 EENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH----VG 538
           + + +K + E Y CVVDLLAR G + DA  +   +      NIW  LL  C  H    +G
Sbjct: 706 KVHGMKLTMEQYSCVVDLLARGGRIDDAFSMVTGMPIEANANIWGTLLGACRTHHEVELG 765

Query: 539 RF 540
           RF
Sbjct: 766 RF 767



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 130/529 (24%), Positives = 247/529 (46%), Gaps = 71/529 (13%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEI---PEKNVVSWSIVIHGYSINGFHE-KSMKAFSHMM 63
           S  LL+ Y K G + E++ LF EI    +++ + W+I++ GY+ +  ++ ++++ F  M 
Sbjct: 62  SKALLNMYAKCGALDESKKLFGEIGSCNDRDPIFWNILLSGYAGSRVYDAETLRLFREMH 121

Query: 64  LSGLL-PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------- 106
            +    P+S T   VL   A L ++ + RS++   +K GL++                  
Sbjct: 122 GANYPKPSSVTAAIVLPVCARLGDVYMGRSVNCYAIKSGLDTHTLAGNALVSMYAKCGLV 181

Query: 107 -------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                  F+ +    +VS NAI++GF  N L + A  LF+      + PN  T+  ++  
Sbjct: 182 CQDAYAAFDSIDEKDVVSWNAIISGFAENNLMEDAFRLFSSMLKGQIKPNYTTLANILPV 241

Query: 160 CVALG---SRALCELIHGLTIKLG-LILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKD 215
           C +     +    + IHG  ++   L+ DV V N+++  Y  +  ++ A  +FR ME +D
Sbjct: 242 CASFDEYIAYWFGKEIHGYVLRHNELLADVFVWNALVSFYLRVGRVEEAELLFRRMELRD 301

Query: 216 VISWTRMMGLFVDFEYAGDALKIFREMRKSRII-CDTVALLNLISVNAILGDLKRGKQLH 274
           ++SW  ++  +        AL++F E+    +I  D+V LL +I   A   +L  GK +H
Sbjct: 302 LVSWNAIIAGYASNGEWSKALELFHELLTLDMIEPDSVTLLCIIPACAQSRNLHVGKMIH 361

Query: 275 AQVVLGGLQSE-LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA 333
             V+   L  E   + N++++ Y+KC D++ +   F  I+ + L+SW +++   V++G  
Sbjct: 362 GYVLRHPLLCEDTSVGNALVSFYAKCDDIEGAYETFFMISRRDLISWNSMLDALVESGYN 421

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFE-----AGFPRYR 388
              L     M  E T + DS+T++S++     +   +   + H  +       + F    
Sbjct: 422 TWFLELLRWMLSEGT-TPDSVTILSVVHFCVNVLKEDKVKEAHSYSIRHRLLASKFDVEP 480

Query: 389 SVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVS-------------------------- 422
           ++ N ++ +Y+KCGN++ A  VF+ +   R++V+                          
Sbjct: 481 TIGNAILDAYAKCGNIEYASKVFQSLSENRNLVTFKAIISGYINCGLLDEAYITFNRMPS 540

Query: 423 -----WNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
                WN ++  Y  N     AL L+H++   G  PD+ T +S+L AC 
Sbjct: 541 SDLSVWNLMVRLYAENDCSSQALGLFHELQAHGIKPDAVTIMSLLPACA 589



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 129/512 (25%), Positives = 234/512 (45%), Gaps = 64/512 (12%)

Query: 73  TMVGVLVAAAGLQNLELARSIHGLMVKFGLES--DLFEGLKNPY---------------L 115
            +  +L + AGL  ++  R++HG +V+ G  S   + + L N Y               +
Sbjct: 26  AVASILKSCAGLSAIKWGRALHGSIVRIGHVSCHAVSKALLNMYAKCGALDESKKLFGEI 85

Query: 116 VSC--------NAIVAGFINNKLFQQAVL-LFNFFRGSGLV-PNAVTMLTVIRGCVALGS 165
            SC        N +++G+  ++++    L LF    G+    P++VT   V+  C  LG 
Sbjct: 86  GSCNDRDPIFWNILLSGYAGSRVYDAETLRLFREMHGANYPKPSSVTAAIVLPVCARLGD 145

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYS-CLMDLDAAIQIFREMECKDVISWTRMMG 224
             +   ++   IK GL       N+++ MY+ C +    A   F  ++ KDV+SW  ++ 
Sbjct: 146 VYMGRSVNCYAIKSGLDTHTLAGNALVSMYAKCGLVCQDAYAAFDSIDEKDVVSWNAIIS 205

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKR---GKQLHAQVVLGG 281
            F +     DA ++F  M K +I  +   L N++ V A   +      GK++H  V+   
Sbjct: 206 GFAENNLMEDAFRLFSSMLKGQIKPNYTTLANILPVCASFDEYIAYWFGKEIHGYVLRHN 265

Query: 282 -LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
            L +++ + N++++ Y + G ++ +  +F ++  + LVSW AII+GY  NG   +AL  F
Sbjct: 266 ELLADVFVWNALVSFYLRVGRVEEAELLFRRMELRDLVSWNAIIAGYASNGEWSKALELF 325

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG-FPRYRSVQNCLISSYS 399
            ++        DS+TL+ I+ A  +   L +   +HG            SV N L+S Y+
Sbjct: 326 HELLTLDMIEPDSVTLLCIIPACAQSRNLHVGKMIHGYVLRHPLLCEDTSVGNALVSFYA 385

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           KC +++ AY  F  M   RD++SWN+++     +G+    L L   M   G  PDS T L
Sbjct: 386 KCDDIEGAYETF-FMISRRDLISWNSMLDALVESGYNTWFLELLRWMLSEGTTPDSVTIL 444

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY-----------------GCVVDLLA 502
           S+++ C               +++E+KVK +  +                    ++D  A
Sbjct: 445 SVVHFC-------------VNVLKEDKVKEAHSYSIRHRLLASKFDVEPTIGNAILDAYA 491

Query: 503 RAGCLSDASGLAGKLLEGMGPNIWRALLSGCV 534
           + G +  AS +   L E      ++A++SG +
Sbjct: 492 KCGNIEYASKVFQSLSENRNLVTFKAIISGYI 523



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 112/487 (22%), Positives = 219/487 (44%), Gaps = 66/487 (13%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L+S Y + G+++EAE LF  +  +++VSW+ +I GY+ NG   K+++ F  ++
Sbjct: 270 DVFVWNALVSFYLRVGRVEEAELLFRRMELRDLVSWNAIIAGYASNGEWSKALELFHELL 329

Query: 64  -LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGL----------------MVKFGLESDL 106
            L  + P+S T++ ++ A A  +NL + + IHG                 +V F  + D 
Sbjct: 330 TLDMIEPDSVTLLCIIPACAQSRNLHVGKMIHGYVLRHPLLCEDTSVGNALVSFYAKCDD 389

Query: 107 FEGLKNPY-------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
            EG    +       L+S N+++   + +      + L  +    G  P++VT+L+V+  
Sbjct: 390 IEGAYETFFMISRRDLISWNSMLDALVESGYNTWFLELLRWMLSEGTTPDSVTILSVVHF 449

Query: 160 CVALGSRALCELIHGLTIKLGLI-----LDVSVNNSVLDMYS------------------ 196
           CV +      +  H  +I+  L+     ++ ++ N++LD Y+                  
Sbjct: 450 CVNVLKEDKVKEAHSYSIRHRLLASKFDVEPTIGNAILDAYAKCGNIEYASKVFQSLSEN 509

Query: 197 ---------------CLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFRE 241
                          C + LD A   F  M   D+  W  M+ L+ + + +  AL +F E
Sbjct: 510 RNLVTFKAIISGYINCGL-LDEAYITFNRMPSSDLSVWNLMVRLYAENDCSSQALGLFHE 568

Query: 242 MRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGD 301
           ++   I  D V +++L+   A +  ++  KQ H   +      +L L  ++  +Y+KCG 
Sbjct: 569 LQAHGIKPDAVTIMSLLPACAEMASVQLIKQCHGYAIRSCF-GDLHLDGALQDVYAKCGS 627

Query: 302 LDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILT 361
           +  +  +F  I  K L+ +TA+I GY  +G  +EAL  F  M  E     D + + ++L+
Sbjct: 628 IGYAFKLFQLIPNKDLIIFTAMIRGYAMHGMGKEALGTFFHM-IELGIKPDHVIITTVLS 686

Query: 362 ASGELAALEICLQL-HGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDV 420
           A      ++  L + + I    G        +C++   ++ G +D A+ +   M    + 
Sbjct: 687 ACSHAGLVDEGLNIFYSIEKVHGMKLTMEQYSCVVDLLARGGRIDDAFSMVTGMPIEANA 746

Query: 421 VSWNTII 427
             W T++
Sbjct: 747 NIWGTLL 753



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 108/222 (48%), Gaps = 6/222 (2%)

Query: 250 DTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVF 309
           D  A+ +++   A L  +K G+ LH  +V  G  S   +S +++ MY+KCG LD S+ +F
Sbjct: 23  DYQAVASILKSCAGLSAIKWGRALHGSIVRIGHVSCHAVSKALLNMYAKCGALDESKKLF 82

Query: 310 NQI---TEKSLVSWTAIISGYVQNGCAR-EALNQFIKMRQEKTDSVDSITLVSILTASGE 365
            +I    ++  + W  ++SGY  +     E L  F +M         S+T   +L     
Sbjct: 83  GEIGSCNDRDPIFWNILLSGYAGSRVYDAETLRLFREMHGANYPKPSSVTAAIVLPVCAR 142

Query: 366 LAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV-DLAYIVFEEMGFLRDVVSWN 424
           L  + +   ++  A ++G   +    N L+S Y+KCG V   AY  F+ +   +DVVSWN
Sbjct: 143 LGDVYMGRSVNCYAIKSGLDTHTLAGNALVSMYAKCGLVCQDAYAAFDSID-EKDVVSWN 201

Query: 425 TIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
            II G+  N   E A  L+  M +    P+ +T  +IL  C 
Sbjct: 202 AIISGFAENNLMEDAFRLFSSMLKGQIKPNYTTLANILPVCA 243



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 75/367 (20%), Positives = 157/367 (42%), Gaps = 61/367 (16%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C D    + L+S Y K   I+ A   F  I  ++++SW+ ++     +G++   ++    
Sbjct: 371 CEDTSVGNALVSFYAKCDDIEGAYETFFMISRRDLISWNSMLDALVESGYNTWFLELLRW 430

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHG-------LMVKFGLE----------- 103
           M+  G  P+S T++ V+     +   +  +  H        L  KF +E           
Sbjct: 431 MLSEGTTPDSVTILSVVHFCVNVLKEDKVKEAHSYSIRHRLLASKFDVEPTIGNAILDAY 490

Query: 104 ---------SDLFEGL-KNPYLVSCNAIVAGFIN-------------------------- 127
                    S +F+ L +N  LV+  AI++G+IN                          
Sbjct: 491 AKCGNIEYASKVFQSLSENRNLVTFKAIISGYINCGLLDEAYITFNRMPSSDLSVWNLMV 550

Query: 128 -----NKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLI 182
                N    QA+ LF+  +  G+ P+AVT+++++  C  + S  L +  HG  I+    
Sbjct: 551 RLYAENDCSSQALGLFHELQAHGIKPDAVTIMSLLPACAEMASVQLIKQCHGYAIR-SCF 609

Query: 183 LDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREM 242
            D+ ++ ++ D+Y+    +  A ++F+ +  KD+I +T M+  +       +AL  F  M
Sbjct: 610 GDLHLDGALQDVYAKCGSIGYAFKLFQLIPNKDLIIFTAMIRGYAMHGMGKEALGTFFHM 669

Query: 243 RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV-VLGGLQSELRLSNSIIAMYSKCGD 301
            +  I  D V +  ++S  +  G +  G  +   +  + G++  +   + ++ + ++ G 
Sbjct: 670 IELGIKPDHVIITTVLSACSHAGLVDEGLNIFYSIEKVHGMKLTMEQYSCVVDLLARGGR 729

Query: 302 LDSSRSV 308
           +D + S+
Sbjct: 730 IDDAFSM 736


>gi|302809912|ref|XP_002986648.1| hypothetical protein SELMODRAFT_41458 [Selaginella moellendorffii]
 gi|300145536|gb|EFJ12211.1| hypothetical protein SELMODRAFT_41458 [Selaginella moellendorffii]
          Length = 623

 Score =  239 bits (610), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 167/556 (30%), Positives = 276/556 (49%), Gaps = 40/556 (7%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML-SGL 67
           + L++ Y K G+++EA  +F  +   N+VSW+ +I  ++  G    ++  F  M L + +
Sbjct: 44  NHLINMYGKCGRVEEARAVFASMEHPNLVSWNTIIAAHAAGGDGRGALAVFRAMQLEASV 103

Query: 68  LPN--SFTMVG-------------VLVAAAG-LQNLELARSIHGLMVKFGLESD---LFE 108
           +P+  SFT V                VAA G L ++ +  S+  +  K G   D   +F+
Sbjct: 104 VPDRVSFTSVANACGSAREARIIHASVAARGFLDDVIIGTSLITMYAKCGSIEDARLVFD 163

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            +     VS NA+++G+  +    Q + LF      G+ PNAVT+L V+  C +L     
Sbjct: 164 SMAERNEVSWNAMLSGYSQHGHGAQLLHLFRAMLQGGVQPNAVTLLPVVNACSSLAQLRQ 223

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM-ECKDVISWTRMMGLFV 227
            +       + G+  +V+V N+ ++M++   D+D A  IF  M   +DVISW  MM  + 
Sbjct: 224 AD-------ECGVEEEVAVRNACINMHAKRGDVDRAAAIFASMVAARDVISWNVMMAGYA 276

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG------ 281
           +     +A+ + R+M +     D V  +N ++       ++ G+ +H ++VL        
Sbjct: 277 NAGRGDEAVVLLRQMEQHGFHPDRVTYVNFLNACDKAEMVEHGRSIHGRIVLQSRDTPAL 336

Query: 282 -LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
            L++   +  S+ +MY++CG +D + +VF  + ++++VSW A+I  Y Q+G AR AL  F
Sbjct: 337 SLRTNAVVGCSLCSMYARCGSIDEAAAVFAGMEQRNVVSWNAMIGAYAQHGRARLALAVF 396

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
             M+Q      D+ITL+S+L A           Q+HG + +    R  ++ N  ++ Y+K
Sbjct: 397 GGMQQHGVKP-DAITLISVLDACAGAGDARRGSQVHGWSLQLQL-RSAALDNAAVNMYAK 454

Query: 401 CGNVDLAYIVFEEM-GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
            G V  A  VFE M    R ++SW+ ++  Y   GH E A  L+H M   G  P+  T +
Sbjct: 455 SGRVAAAREVFEAMDAQRRTIMSWSAMVAAYAGVGHAEEAFRLFHAMQREGVRPNHVTLI 514

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK--L 517
           SIL AC HAG+   G   F  M  +  V P +EH GCVVD+L RAG +  A  L  +   
Sbjct: 515 SILGACSHAGMLQAGCSCFASMAADYGVWPREEHTGCVVDMLGRAGWVEQAHRLVQRSGA 574

Query: 518 LEGMGPNIWRALLSGC 533
             G     W A+L  C
Sbjct: 575 GGGGDAQAWMAVLGAC 590



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 120/417 (28%), Positives = 207/417 (49%), Gaps = 25/417 (5%)

Query: 150 AVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVS---VNNSVLDMYSCLMDLDAAIQ 206
           A T   +++ C  L + A  + IH   +        S   V N +++MY     ++ A  
Sbjct: 2   ASTYARLLQACARLKALAQGQRIHAHILSSHSSSGSSSTLVLNHLINMYGKCGRVEEARA 61

Query: 207 IFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMR-KSRIICDTVALLNLISVNAILG 265
           +F  ME  +++SW  ++           AL +FR M+ ++ ++ D V   +  SV    G
Sbjct: 62  VFASMEHPNLVSWNTIIAAHAAGGDGRGALAVFRAMQLEASVVPDRV---SFTSVANACG 118

Query: 266 DLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIIS 325
             +  + +HA V   G   ++ +  S+I MY+KCG ++ +R VF+ + E++ VSW A++S
Sbjct: 119 SAREARIIHASVAARGFLDDVIIGTSLITMYAKCGSIEDARLVFDSMAERNEVSWNAMLS 178

Query: 326 GYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFP 385
           GY Q+G   + L+ F  M Q      +++TL+ ++ A   LA L         A E G  
Sbjct: 179 GYSQHGHGAQLLHLFRAMLQGGVQP-NAVTLLPVVNACSSLAQLR-------QADECGVE 230

Query: 386 RYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHK 445
              +V+N  I+ ++K G+VD A  +F  M   RDV+SWN ++ GY   G G+ A+ L  +
Sbjct: 231 EEVAVRNACINMHAKRGDVDRAAAIFASMVAARDVISWNVMMAGYANAGRGDEAVVLLRQ 290

Query: 446 MTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKP-----SQEHYGC-VVD 499
           M + G  PD  TY++ LNAC  A +   G  I  +++ +++  P     +    GC +  
Sbjct: 291 MEQHGFHPDRVTYVNFLNACDKAEMVEHGRSIHGRIVLQSRDTPALSLRTNAVVGCSLCS 350

Query: 500 LLARAGCLSDASGL-AGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGI 555
           + AR G + +A+ + AG  +E      W A++     H GR + A A+  G Q+ G+
Sbjct: 351 MYARCGSIDEAAAVFAG--MEQRNVVSWNAMIGAYAQH-GRARLALAVFGGMQQHGV 404



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 151/319 (47%), Gaps = 18/319 (5%)

Query: 256 NLISVNAILGDLKRGKQLHAQVVLGGLQSELRLS---NSIIAMYSKCGDLDSSRSVFNQI 312
            L+   A L  L +G+++HA ++     S    +   N +I MY KCG ++ +R+VF  +
Sbjct: 7   RLLQACARLKALAQGQRIHAHILSSHSSSGSSSTLVLNHLINMYGKCGRVEEARAVFASM 66

Query: 313 TEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEIC 372
              +LVSW  II+ +   G  R AL  F  M+ E +   D ++  S+  A G      I 
Sbjct: 67  EHPNLVSWNTIIAAHAAGGDGRGALAVFRAMQLEASVVPDRVSFTSVANACGSAREARI- 125

Query: 373 LQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGV 432
             +H      GF     +   LI+ Y+KCG+++ A +VF+ M   R+ VSWN ++ GY  
Sbjct: 126 --IHASVAARGFLDDVIIGTSLITMYAKCGSIEDARLVFDSMAE-RNEVSWNAMLSGYSQ 182

Query: 433 NGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQE 492
           +GHG   L L+  M + G  P++ T L ++NAC         L    Q  +E  V+    
Sbjct: 183 HGHGAQLLHLFRAMLQGGVQPNAVTLLPVVNAC-------SSLAQLRQ-ADECGVEEEVA 234

Query: 493 HYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQK 552
                +++ A+ G +  A+ +   ++       W  +++G   + GR  +A  L    ++
Sbjct: 235 VRNACINMHAKRGDVDRAAAIFASMVAARDVISWNVMMAG-YANAGRGDEAVVLLRQMEQ 293

Query: 553 KGII--KIPGISFLNSTSR 569
            G    ++  ++FLN+  +
Sbjct: 294 HGFHPDRVTYVNFLNACDK 312


>gi|125535021|gb|EAY81569.1| hypothetical protein OsI_36733 [Oryza sativa Indica Group]
          Length = 677

 Score =  239 bits (610), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 162/542 (29%), Positives = 269/542 (49%), Gaps = 37/542 (6%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEI-----PEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           Y +S L+S YF+ G    A  +FD       P+K ++ ++ ++ GY   G    ++  F 
Sbjct: 50  YVASLLVSRYFRLGDAGAARKVFDAAATAAAPQKALL-YNAMLRGYLAGGLPRMAVGVFG 108

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL-------------- 106
            M  +  LP+  T    + A A     E+   I       G  SDL              
Sbjct: 109 EMAAAACLPDRHTYHLAVAACARASEFEVGWRIGAEAAAKGFASDLLVATALIGMYAEAG 168

Query: 107 --------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLV-PNAVTMLTVI 157
                   F+G+     V+ NA++AG+      ++ V LF   R   +V P   T++T++
Sbjct: 169 DMGAARKVFDGMPQRDAVAWNAVIAGYARGGHLREVVELFMRMRSVDVVLPTEATLVTLV 228

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
            G    GS     ++H + IKLG  L++ V+N++LD+Y     L  A+ +FR+M  KD +
Sbjct: 229 SGYAGFGSWEGRGMMHTIVIKLGFQLNLFVSNALLDLYVEFGCLREAVMLFRQMAVKDSV 288

Query: 218 SWTRMMGLFVDFEYAGDALKIFREM-RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQ 276
           +W+ M+G  V       ALK+FR M   S ++     LLN+I   A LG+ + GK +   
Sbjct: 289 TWSAMIGGLVRNGRPDSALKLFRWMVTNSTVLVTRSILLNVIMACAELGEWREGKWVEEN 348

Query: 277 VVLGG---LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE--KSLVSWTAIISGYVQNG 331
            V       + +  +  ++I MY+KCG LDSS S+   + E    + +W A+I G  + G
Sbjct: 349 YVCCNGFEFKRDPSVVTALIYMYAKCGMLDSSVSLLYGVAEVRDDVFAWNAMIKGCGELG 408

Query: 332 CAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ 391
              +A+   ++M++   D  D+IT + IL     + +L+  ++ H      GF   R++ 
Sbjct: 409 LVEKAVGFVVEMQKIGVDP-DAITYLEILPMISLIPSLKTGMEAHAQIVRRGFLNERAIA 467

Query: 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE 451
           N L+S Y +CG++  +  VF  +  ++DV+SW +++  Y  NGH    + LY  M +T  
Sbjct: 468 NSLVSMYGRCGSLRHSIEVFSRI-VVKDVISWTSMMQVYAWNGHVNEVVKLYEVMKKTET 526

Query: 452 VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDAS 511
            P+  T+L++L+AC + GL  +G+ +   M E+  +KP  EH  CVVD+L RAG L+DA 
Sbjct: 527 EPNHYTFLAVLSACKNTGLVEEGMELIKYMQEKCGLKPEIEHISCVVDMLCRAGRLTDAY 586

Query: 512 GL 513
            L
Sbjct: 587 HL 588



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 91/374 (24%), Positives = 173/374 (46%), Gaps = 19/374 (5%)

Query: 173 HGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC----KDVISWTRMMGLFVD 228
           H L +  GL  +  V + ++  Y  L D  AA ++F         +  + +  M+  ++ 
Sbjct: 37  HALAVVAGLASNGYVASLLVSRYFRLGDAGAARKVFDAAATAAAPQKALLYNAMLRGYLA 96

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
                 A+ +F EM  +  + D       ++  A   + + G ++ A+    G  S+L +
Sbjct: 97  GGLPRMAVGVFGEMAAAACLPDRHTYHLAVAACARASEFEVGWRIGAEAAAKGFASDLLV 156

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
           + ++I MY++ GD+ ++R VF+ + ++  V+W A+I+GY + G  RE +  F++MR    
Sbjct: 157 ATALIGMYAEAGDMGAARKVFDGMPQRDAVAWNAVIAGYARGGHLREVVELFMRMRSVDV 216

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
                 TLV++++      + E    +H I  + GF     V N L+  Y + G +  A 
Sbjct: 217 VLPTEATLVTLVSGYAGFGSWEGRGMMHTIVIKLGFQLNLFVSNALLDLYVEFGCLREAV 276

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM-TETGEVPDSSTYLSILNACGH 467
           ++F +M  ++D V+W+ +I G   NG  ++AL L+  M T +  +   S  L+++ AC  
Sbjct: 277 MLFRQMA-VKDSVTWSAMIGGLVRNGRPDSALKLFRWMVTNSTVLVTRSILLNVIMACAE 335

Query: 468 AGLTNDGLVIFNQMIEENKV-------KPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
            G   +G     + +EEN V       K        ++ + A+ G L  +  L   + E 
Sbjct: 336 LGEWREG-----KWVEENYVCCNGFEFKRDPSVVTALIYMYAKCGMLDSSVSLLYGVAEV 390

Query: 521 MGPNI-WRALLSGC 533
                 W A++ GC
Sbjct: 391 RDDVFAWNAMIKGC 404


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  239 bits (609), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 156/529 (29%), Positives = 256/529 (48%), Gaps = 71/529 (13%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVP-NAVTMLTVIRGCVALG 164
           LF  +  P L   N ++ G+  +   ++A++L+      G+ P N  T   ++  C  L 
Sbjct: 66  LFSQIDCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLS 125

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
           S      +H   IK G   D+ V N+++ +YS   +L+ A  +F E   +D++S+  M+ 
Sbjct: 126 SLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIK 185

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV--LGGL 282
            + +      AL +F EM+ S I+ D    + L SV ++L +   GKQ+HAQV   L  +
Sbjct: 186 GYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSI 245

Query: 283 QSELRLSNSIIAMYSK--------------------------------CGDLDSSRSVFN 310
            S + L ++I+ MY+K                                CG+++ +R +FN
Sbjct: 246 DSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFN 305

Query: 311 QITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALE 370
            + E+ ++SWTA+ISGY Q G   EAL  F +M        D +TLV++L+A   L A +
Sbjct: 306 HMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKP-DEVTLVAVLSACARLGAFD 364

Query: 371 ICLQLHGIAFEAG-FPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGF-LRDVVSWNTIIY 428
           +  +L+    E G F +   +   ++  Y+KCG++D A  +F  +G  ++    +N++I 
Sbjct: 365 LGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIA 424

Query: 429 GYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVK 488
           G   +G GETA+ ++ ++  TG  PD  T++ +L ACGH+GL  +G  +F  M     +K
Sbjct: 425 GLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIK 484

Query: 489 PSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH------------ 536
           P  EHYGC+VDLL R GCL +A  L  K+       IWRALLS C  H            
Sbjct: 485 PQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIAGQK 544

Query: 537 ---------------------VGRFQDAEALRSGSQKKGIIKIPGISFL 564
                                  ++++A  +R   +  GI K PG S++
Sbjct: 545 LLEMEAQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYI 593



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 135/560 (24%), Positives = 243/560 (43%), Gaps = 72/560 (12%)

Query: 27  LFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLP-NSFTMVGVLVAAAGLQ 85
           LF +I   N+  W+ +I GYS +    +++  +  M+  G+ P N+FT   +L + A L 
Sbjct: 66  LFSQIDCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLS 125

Query: 86  NLELARSIHGLMVKFGLESDLF--EGLKNPY--------------------LVSCNAIVA 123
           +LE    +H  ++K G ESDLF    L + Y                    LVS N ++ 
Sbjct: 126 SLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIK 185

Query: 124 GFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLIL 183
           G+      + A+ LF   + SG++P+  T + +   C  L    + + IH    K    +
Sbjct: 186 GYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSI 245

Query: 184 DVSV--NNSVLDMYS-CLM-------------------------------DLDAAIQIFR 209
           D ++   ++++DMY+ C +                               +++ A ++F 
Sbjct: 246 DSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFN 305

Query: 210 EMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKR 269
            M  +DVISWT M+  +       +AL++F+EM    I  D V L+ ++S  A LG    
Sbjct: 306 HMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDL 365

Query: 270 GKQLHAQVVLGGL-QSELRLSNSIIAMYSKCGDLDSSRSVFNQITE--KSLVSWTAIISG 326
           GK+L+ Q +  G+      L+ +++ MY+KCG +DS+  +F ++ +  K+   + ++I+G
Sbjct: 366 GKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAG 425

Query: 327 YVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEA-GFP 385
             Q+G    A+  F ++        D +T V +L A G    +E   +L    F A G  
Sbjct: 426 LAQHGLGETAITVFRELISTGLKP-DEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIK 484

Query: 386 RYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHK 445
                  C++    + G ++ AY + ++M F  + V W  ++     +G+ +       K
Sbjct: 485 PQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIAGQK 544

Query: 446 MTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY----GCVVDLL 501
           + E  E    + Y+ + N    A    +   +   M +    KP    Y    G +   +
Sbjct: 545 LLEM-EAQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYIELGGAIHRFV 603

Query: 502 ARAGCLSDASGLAGKLLEGM 521
           A     SD S   GK +E M
Sbjct: 604 A-----SDKSHPQGKEIELM 618



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 80/275 (29%), Positives = 141/275 (51%), Gaps = 15/275 (5%)

Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGD---LDSSRSVFNQITEKSLVSWTAI 323
            K+G Q+HAQ ++ GL  ++   + +I+ +S  G    LD SR +F+QI   +L  W  +
Sbjct: 22  FKQGLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQIDCPNLFMWNTM 81

Query: 324 ISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG 383
           I GY ++   REA+  ++ M  +     ++ T   +L +   L++LE   ++H    + G
Sbjct: 82  IRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHIIKHG 141

Query: 384 FPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALY 443
           F     V+N LI  YS  GN++LA  +F+E   +RD+VS+NT+I GY      E+AL L+
Sbjct: 142 FESDLFVRNALIHLYSVFGNLNLARTLFDE-SLVRDLVSYNTMIKGYAEVNQPESALCLF 200

Query: 444 HKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQM------IEENKVKPSQEHYGCV 497
            +M  +G +PD  T++++ + C      N G  I  Q+      I+ N +  S      +
Sbjct: 201 GEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKS-----AI 255

Query: 498 VDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSG 532
           VD+ A+ G ++ A  +   +        W +++ G
Sbjct: 256 VDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCG 290



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 104/225 (46%), Gaps = 45/225 (20%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           S ++  Y + G+I  A  LF+ + E++V+SW+ +I GYS  G   ++++ F  M   G+ 
Sbjct: 285 SSMVCGYARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIK 344

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES----------DLF----------- 107
           P+  T+V VL A A L   +L + ++   ++ G+ +          D++           
Sbjct: 345 PDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALE 404

Query: 108 ------EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                 + +K  ++   N+++AG   + L + A+ +F     +GL P+ VT + V     
Sbjct: 405 IFRRVGKNMKTGFVF--NSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGV----- 457

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSV-----LDMYSCLMDL 201
                 LC   H   I+ G  L  S+ N+      ++ Y C++DL
Sbjct: 458 ------LCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDL 496


>gi|297740913|emb|CBI31095.3| unnamed protein product [Vitis vinifera]
          Length = 768

 Score =  239 bits (609), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 171/628 (27%), Positives = 291/628 (46%), Gaps = 106/628 (16%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y  + LL  Y K   I +A   F ++PE N VS++ ++ G + +    ++ + F  M+ +
Sbjct: 144 YVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRN 203

Query: 66  GLLPNSFTMVGVLVAAA-------GLQ--NLELARSIHG-----LMVKFGLESDL----- 106
            +  +S ++  VL   +       GL   N  L+  +HG     L +K G ESDL     
Sbjct: 204 RIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNS 263

Query: 107 -----------------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPN 149
                            F  +    +VS N ++AG+       +A+      +  G  P+
Sbjct: 264 LLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPD 323

Query: 150 AVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFR 209
            +T + ++  C+  G                                   D++A  Q+F 
Sbjct: 324 EITYVNMLVACIKSG-----------------------------------DIEAGRQMFD 348

Query: 210 EMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKR 269
            M    + SW  ++  +   E   +A+K+FREM+   +  D   L  ++S  A +  L+ 
Sbjct: 349 GMSSPSLSSWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGMMLLEG 408

Query: 270 GKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQ 329
           G+Q+HA       ++++ L++ +I MYSKCG ++ ++ +F++I E  +V W ++++G   
Sbjct: 409 GRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSL 468

Query: 330 NGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS 389
           N   +EA   F KMR EK       +  ++L+   +L++L    Q+H      G+     
Sbjct: 469 NSLDKEAFTFFKKMR-EKGMFPSQFSYATVLSCCAKLSSLSQGRQVHSQIAREGYMNDAF 527

Query: 390 VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
           V + LI  YSKCG+VD A  VF+ M   ++ V+WN +I+GY  NG G+ A+ LY  M  +
Sbjct: 528 VGSALIDMYSKCGDVDAARWVFDMM-LGKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIGS 586

Query: 450 GEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSD 509
           GE PD  T++++L AC H+GL + G+ IFN M +E+ V+P  +HY C++D L RAG L +
Sbjct: 587 GEKPDGITFVAVLTACSHSGLVDTGIKIFNSMQQEHGVEPLVDHYTCIIDSLGRAGRLHE 646

Query: 510 ASGLAGKLLEGMGPNIWRALLSGCVLH--------------------------------- 536
           A  L  K+     P IW  LLS C ++                                 
Sbjct: 647 AEVLIDKMPCKYDPIIWEVLLSSCRVYADVSLARRAAEELFHLDPQNSAPYVLLANIYSS 706

Query: 537 VGRFQDAEALRSGSQKKGIIKIPGISFL 564
           +GR+ DA+A+R       ++K PG S++
Sbjct: 707 LGRWDDAKAVRELMSYNQVVKDPGYSWI 734



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 127/495 (25%), Positives = 240/495 (48%), Gaps = 37/495 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + ++ LL  Y K+G +  AE +F  +PE +VVSW+++I GY       K+++    M 
Sbjct: 257 DLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQ 316

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVA 123
             G  P+  T V +LVA     ++E  R              +F+G+ +P L S N I++
Sbjct: 317 YHGFEPDEITYVNMLVACIKSGDIEAGRQ-------------MFDGMSSPSLSSWNTILS 363

Query: 124 GFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLIL 183
           G+  N+  ++AV LF   +   + P+  T+  ++     +        +H ++ K     
Sbjct: 364 GYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGMMLLEGGRQVHAVSQKAVFRT 423

Query: 184 DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMR 243
           D+ + + ++ MYS    ++ A +IF  +   D++ W  MM          +A   F++MR
Sbjct: 424 DIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSLNSLDKEAFTFFKKMR 483

Query: 244 KSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLD 303
           +  +     +   ++S  A L  L +G+Q+H+Q+   G  ++  + +++I MYSKCGD+D
Sbjct: 484 EKGMFPSQFSYATVLSCCAKLSSLSQGRQVHSQIAREGYMNDAFVGSALIDMYSKCGDVD 543

Query: 304 SSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM--RQEKTDSVDSITLVSILT 361
           ++R VF+ +  K+ V+W  +I GY QNGC  EA+  +  M    EK    D IT V++LT
Sbjct: 544 AARWVFDMMLGKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIGSGEKP---DGITFVAVLT 600

Query: 362 ASGELAALEICLQL-HGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDV 420
           A      ++  +++ + +  E G         C+I S  + G +  A ++ ++M    D 
Sbjct: 601 ACSHSGLVDTGIKIFNSMQQEHGVEPLVDHYTCIIDSLGRAGRLHEAEVLIDKMPCKYDP 660

Query: 421 VSWNTIIYGYGVNGHGETALA------LYHKMTETGEVPDSSTYLSILNACGHAGLTNDG 474
           + W  ++    V  + + +LA      L+H      +  +S+ Y+ + N     G  +D 
Sbjct: 661 IIWEVLLSSCRV--YADVSLARRAAEELFHL-----DPQNSAPYVLLANIYSSLGRWDDA 713

Query: 475 -----LVIFNQMIEE 484
                L+ +NQ++++
Sbjct: 714 KAVRELMSYNQVVKD 728



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 134/568 (23%), Positives = 255/568 (44%), Gaps = 79/568 (13%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + S++L+  Y K   I  +  LFD++P++++ +W+ ++  Y      E +   F+ M 
Sbjct: 39  DTFLSNRLIEFYAKCNAIDASRRLFDQMPKRDIYTWNAILGAYCKASELEDAHVLFAEMP 98

Query: 64  LSGLLPNSFTMVGVLV---AAAGLQNLELARSIHGLMVKFGLESDLFEG----------- 109
              ++  + T++  L    A   L ++E  R  HG+ +K GL+++++ G           
Sbjct: 99  ERNIVSWN-TLISALTRNGACGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCR 157

Query: 110 -----------LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                      +  P  VS  A++ G  ++    +A  LF     + +  ++V++ +V+ 
Sbjct: 158 CIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLG 217

Query: 159 GCV--------------ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAA 204
            C                L S    + +H LTIK G   D+ +NNS+LDMY+   ++D+A
Sbjct: 218 VCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSA 277

Query: 205 IQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAIL 264
             IF  M    V+SW  M+  +     +  A++  + M+      D +  +N++      
Sbjct: 278 EMIFVNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKS 337

Query: 265 GDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAII 324
           GD++ G+Q+                                   F+ ++  SL SW  I+
Sbjct: 338 GDIEAGRQM-----------------------------------FDGMSSPSLSSWNTIL 362

Query: 325 SGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGF 384
           SGY QN   +EA+  F +M Q ++   D  TL  IL++   +  LE   Q+H ++ +A F
Sbjct: 363 SGYSQNENHKEAVKLFREM-QFRSVHPDRTTLAIILSSLAGMMLLEGGRQVHAVSQKAVF 421

Query: 385 PRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH 444
                + + LI  YSKCG V++A  +F+ +  L D+V WN+++ G  +N   + A   + 
Sbjct: 422 RTDIYLASGLIGMYSKCGKVEMAKRIFDRIAEL-DIVCWNSMMAGLSLNSLDKEAFTFFK 480

Query: 445 KMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARA 504
           KM E G  P   +Y ++L+ C      + G  + +Q+  E  +  +      ++D+ ++ 
Sbjct: 481 KMREKGMFPSQFSYATVLSCCAKLSSLSQGRQVHSQIAREGYMNDAFVG-SALIDMYSKC 539

Query: 505 GCLSDASGLAGKLLEGMGPNIWRALLSG 532
           G + DA+     ++ G     W  ++ G
Sbjct: 540 GDV-DAARWVFDMMLGKNTVTWNEMIHG 566



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 168/346 (48%), Gaps = 20/346 (5%)

Query: 153 MLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME 212
           + ++++ C+   +    +LIH   ++  L  D  ++N +++ Y+    +DA+ ++F +M 
Sbjct: 8   LASLLQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMP 67

Query: 213 CKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILG---DLKR 269
            +D+ +W  ++G +       DA  +F EM +  I+     L++ ++ N   G   D++ 
Sbjct: 68  KRDIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNT-LISALTRNGACGALVDVEC 126

Query: 270 GKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQ 329
           G++ H   +  GL + + + N+++ MY+KC  +  +   F  + E + VS+TA++ G   
Sbjct: 127 GRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLAD 186

Query: 330 NGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICL--------------QL 375
           +    EA   F  M + +   VDS++L S+L         E  L              Q+
Sbjct: 187 SDQVNEAFRLFRLMLRNRI-HVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQV 245

Query: 376 HGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGH 435
           H +  + GF     + N L+  Y+K GN+D A ++F  M  +  VVSWN +I GYG    
Sbjct: 246 HCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEV-SVVSWNVMIAGYGQKSQ 304

Query: 436 GETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQM 481
              A+    +M   G  PD  TY+++L AC  +G    G  +F+ M
Sbjct: 305 SSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQMFDGM 350



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 106/227 (46%), Gaps = 7/227 (3%)

Query: 270 GKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQ 329
           GK +HA ++   L  +  LSN +I  Y+KC  +D+SR +F+Q+ ++ + +W AI+  Y +
Sbjct: 24  GKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMPKRDIYTWNAILGAYCK 83

Query: 330 NGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAAL---EICLQLHGIAFEAGFPR 386
                +A   F +M +    S +  TL+S LT +G   AL   E   + HGI+ + G   
Sbjct: 84  ASELEDAHVLFAEMPERNIVSWN--TLISALTRNGACGALVDVECGRRCHGISIKIGLDN 141

Query: 387 YRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM 446
              V N L+  Y+KC  +  A   F ++    + VS+  ++ G   +     A  L+  M
Sbjct: 142 NIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNE-VSFTAMMGGLADSDQVNEAFRLFRLM 200

Query: 447 TETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEH 493
                  DS +  S+L  C   G    GL   N ++  + V   Q H
Sbjct: 201 LRNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSD-VHGQQVH 246


>gi|449464466|ref|XP_004149950.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101216349
            [Cucumis sativus]
          Length = 1830

 Score =  239 bits (609), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 155/561 (27%), Positives = 283/561 (50%), Gaps = 52/561 (9%)

Query: 9    SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
            +KL+  Y   G ++ A  +FD++P  +  +W ++I  Y +N      +  ++ M +S   
Sbjct: 1156 TKLVGVYGALGDVRSARMVFDQMPNPDFYAWKVMIRWYFLNDLFVDVIPFYNRMRMSFRE 1215

Query: 69   PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG---------------------LESDLF 107
             ++     +L A + L+ +   R +H  +VK G                       S +F
Sbjct: 1216 CDNIIFSIILKACSELREIVEGRKVHCQIVKVGGPDSFVMTGLIDMYGKCGQVECSSAVF 1275

Query: 108  EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRA 167
            E + +  +VS  +++AG++ N   ++ ++LFN  R + +  N  T+ ++I     L +  
Sbjct: 1276 EEIMDKNVVSWTSMIAGYVQNNCAEEGLVLFNRMRDALVESNPFTLGSIINAFTKLRALH 1335

Query: 168  LCELIHGLTIKLGLILDVSVNNSVLDMY-SCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
              + +HG  IK    L   +  + LDMY  C    DA + I+ E+   D++SWT M+  +
Sbjct: 1336 QGKWVHGYAIKNIAELSSFLATTFLDMYVKCGQTRDARM-IYDELPTIDLVSWTVMIVGY 1394

Query: 227  VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
                   D L++F +  +S ++ ++  L                     QV        +
Sbjct: 1395 TQARQPNDGLRLFADEIRSDLLPNSALL---------------------QVFF----QRV 1429

Query: 287  RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            R  N++I MY+KC  +  + ++F+ + EK +++W ++ISGY QNG A +AL  F +MR  
Sbjct: 1430 RFLNALIDMYAKCHTISDAYAIFHGVLEKDVITWNSMISGYAQNGSAYDALRLFNQMRSY 1489

Query: 347  KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG-FPRYRSVQNCLISSYSKCGNVD 405
               + D+ITLVS L+AS  L A+++   LH  + + G F     +   L++ Y+KCG+  
Sbjct: 1490 SL-APDAITLVSTLSASATLGAIQVGSSLHAYSVKGGLFSSNLYIGTALLNFYAKCGDAR 1548

Query: 406  LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
             A +VF+ MG ++++++W+ +I GYGV G G  +L+++  M +    P+   + ++L+AC
Sbjct: 1549 SARMVFDSMG-VKNIITWSAMIGGYGVQGDGSGSLSIFSNMLKEDLKPNEVIFTTVLSAC 1607

Query: 466  GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI 525
             ++G+  +G   F  MI++    PS +HY C+VDLLAR+G L +A     K+      ++
Sbjct: 1608 SYSGMVEEGGRYFKSMIQDYNFVPSMKHYACMVDLLARSGKLDEALDFIKKMPVQRDVSL 1667

Query: 526  WRALLSGCVLHVGRFQDAEAL 546
            + A L GC L+  RF   E +
Sbjct: 1668 YGAFLHGCGLY-SRFDLGEVV 1687



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 121/459 (26%), Positives = 214/459 (46%), Gaps = 62/459 (13%)

Query: 4    DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
            D +  + L+  Y K G+++ +  +F+EI +KNVVSW+ +I GY  N   E+ +  F+ M 
Sbjct: 1251 DSFVMTGLIDMYGKCGQVECSSAVFEEIMDKNVVSWTSMIAGYVQNNCAEEGLVLFNRMR 1310

Query: 64   LSGLLPNSFTMVGVLVAAAGLQNLELARSIHG-------------------LMVKFGLES 104
             + +  N FT+  ++ A   L+ L   + +HG                   + VK G   
Sbjct: 1311 DALVESNPFTLGSIINAFTKLRALHQGKWVHGYAIKNIAELSSFLATTFLDMYVKCGQTR 1370

Query: 105  D---LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
            D   +++ L    LVS   ++ G+   +     + LF     S L+PN+  +    +   
Sbjct: 1371 DARMIYDELPTIDLVSWTVMIVGYTQARQPNDGLRLFADEIRSDLLPNSALLQVFFQRVR 1430

Query: 162  ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
             L                         N+++DMY+    +  A  IF  +  KDVI+W  
Sbjct: 1431 FL-------------------------NALIDMYAKCHTISDAYAIFHGVLEKDVITWNS 1465

Query: 222  MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
            M+  +     A DAL++F +MR   +  D + L++ +S +A LG ++ G  LHA  V GG
Sbjct: 1466 MISGYAQNGSAYDALRLFNQMRSYSLAPDAITLVSTLSASATLGAIQVGSSLHAYSVKGG 1525

Query: 282  L-QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
            L  S L +  +++  Y+KCGD  S+R VF+ +  K++++W+A+I GY   G    +L+ F
Sbjct: 1526 LFSSNLYIGTALLNFYAKCGDARSARMVFDSMGVKNIITWSAMIGGYGVQGDGSGSLSIF 1585

Query: 341  IKMRQE--KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN-----C 393
              M +E  K + V   T++S  + SG        ++  G  F++    Y  V +     C
Sbjct: 1586 SNMLKEDLKPNEVIFTTVLSACSYSG-------MVEEGGRYFKSMIQDYNFVPSMKHYAC 1638

Query: 394  LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGV 432
            ++   ++ G +D A    ++M   RDV  +   ++G G+
Sbjct: 1639 MVDLLARSGKLDEALDFIKKMPVQRDVSLYGAFLHGCGL 1677



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/362 (27%), Positives = 173/362 (47%), Gaps = 32/362 (8%)

Query: 172  IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
             HGL I  GLI ++  +  ++ +Y  L D+ +A  +F +M   D  +W  M+  +   + 
Sbjct: 1139 FHGLLIVHGLIGNLLCDTKLVGVYGALGDVRSARMVFDQMPNPDFYAWKVMIRWYFLNDL 1198

Query: 232  AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV-LGGLQSELRLSN 290
              D +  +  MR S   CD +    ++   + L ++  G+++H Q+V +GG  S   +  
Sbjct: 1199 FVDVIPFYNRMRMSFRECDNIIFSIILKACSELREIVEGRKVHCQIVKVGGPDS--FVMT 1256

Query: 291  SIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDS 350
             +I MY KCG ++ S +VF +I +K++VSWT++I+GYVQN CA E L  F +MR    +S
Sbjct: 1257 GLIDMYGKCGQVECSSAVFEEIMDKNVVSWTSMIAGYVQNNCAEEGLVLFNRMRDALVES 1316

Query: 351  VDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIV 410
             +  TL SI+ A  +L AL     +HG A +        +    +  Y KCG    A ++
Sbjct: 1317 -NPFTLGSIINAFTKLRALHQGKWVHGYAIKNIAELSSFLATTFLDMYVKCGQTRDARMI 1375

Query: 411  FEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGL 470
            ++E+  + D+VSW  +I GY         L L+     +  +P+S+              
Sbjct: 1376 YDELPTI-DLVSWTVMIVGYTQARQPNDGLRLFADEIRSDLLPNSAL------------- 1421

Query: 471  TNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALL 530
                L +F Q +              ++D+ A+   +SDA  +   +LE      W +++
Sbjct: 1422 ----LQVFFQRV---------RFLNALIDMYAKCHTISDAYAIFHGVLEK-DVITWNSMI 1467

Query: 531  SG 532
            SG
Sbjct: 1468 SG 1469



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 74/270 (27%), Positives = 121/270 (44%), Gaps = 11/270 (4%)

Query: 272  QLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNG 331
            + H  +++ GL   L     ++ +Y   GD+ S+R VF+Q+      +W  +I  Y  N 
Sbjct: 1138 KFHGLLIVHGLIGNLLCDTKLVGVYGALGDVRSARMVFDQMPNPDFYAWKVMIRWYFLND 1197

Query: 332  CAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ 391
               + +  + +MR    +  D+I    IL A  EL  +    ++H    + G P    V 
Sbjct: 1198 LFVDVIPFYNRMRMSFRE-CDNIIFSIILKACSELREIVEGRKVHCQIVKVGGPD-SFVM 1255

Query: 392  NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE 451
              LI  Y KCG V+ +  VFEE+   ++VVSW ++I GY  N   E  L L+++M +   
Sbjct: 1256 TGLIDMYGKCGQVECSSAVFEEI-MDKNVVSWTSMIAGYVQNNCAEEGLVLFNRMRDALV 1314

Query: 452  VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDAS 511
              +  T  SI+NA       + G  +    I +N  + S       +D+  + G   DA 
Sbjct: 1315 ESNPFTLGSIINAFTKLRALHQGKWVHGYAI-KNIAELSSFLATTFLDMYVKCGQTRDAR 1373

Query: 512  GLAGKLLEGMGPNIWRALLSGCVLHVGRFQ 541
             +  +L     P I   L+S  V+ VG  Q
Sbjct: 1374 MIYDEL-----PTI--DLVSWTVMIVGYTQ 1396


>gi|147771902|emb|CAN75707.1| hypothetical protein VITISV_031420 [Vitis vinifera]
          Length = 708

 Score =  239 bits (609), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 158/553 (28%), Positives = 270/553 (48%), Gaps = 70/553 (12%)

Query: 73  TMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-----------------------LFEG 109
           T   VL    GLQ       IH  ++K GLE D                       +F+G
Sbjct: 127 TCTKVLAFNHGLQ-------IHAHVIKSGLEFDRFVGNSLLTLYFKLGTDFPETRKVFDG 179

Query: 110 LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALC 169
           L    ++S  ++++G++       ++ LF      G+ PNA T+  VI+ C  LG   L 
Sbjct: 180 LFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKACSELGDLKLG 239

Query: 170 ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDF 229
            + HG+ +  G   +  + ++++DM+     LD A Q+F E+   D I WT ++      
Sbjct: 240 RIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDELLEPDAICWTSIISALTRN 299

Query: 230 EYAGDALKIFREMRKSRIIC-DTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
           ++  +AL+ F  M++   +C D      +++    LG LK+GK++HA+V+  G    + +
Sbjct: 300 DFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVVV 359

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
            +S++ MY KCG +  S+ +F+++  K+ VSW+A++ GY QNG  +  +  F KM     
Sbjct: 360 ESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKM----- 414

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
           + VD     +IL     LAA+    ++H      G  R   V++ L+  Y+KCG ++ A 
Sbjct: 415 EKVDLYCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVESALVDLYAKCGCIEYAQ 474

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
            +F++M  +R++++WN++I G+  NG GE AL ++++M + G  PD  +++ IL AC H 
Sbjct: 475 TIFDQMP-VRNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFACSHR 533

Query: 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRA 528
           GL ++G   F  M ++  +K   EHY C+VDLL RAG L +A  L          ++W A
Sbjct: 534 GLVDEGREYFISMTKDYGIKVGIEHYSCMVDLLGRAGLLEEAEILIETSDFRDDSSLWAA 593

Query: 529 LLSGCVL---------------------------------HVGRFQDAEALRSGSQKKGI 555
           LL  C                                    VGR+ DA  +R   + +G+
Sbjct: 594 LLGACTTCTNYEIAERIAKRVMELEPDYHLSYVLLANVYKAVGRWNDALRIRRLMKDRGV 653

Query: 556 IKIPGISFLNSTS 568
            K+PG S++ + +
Sbjct: 654 NKMPGKSWIETKN 666



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 130/509 (25%), Positives = 239/509 (46%), Gaps = 41/509 (8%)

Query: 3   IDPYNSSKLLSNYFKSG-KIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
            D +  + LL+ YFK G    E   +FD +  K+V+SW+ +I GY   G    S++ F  
Sbjct: 151 FDRFVGNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWK 210

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------- 105
           M+  G+ PN+FT+  V+ A + L +L+L R  HG+++  G +S+                
Sbjct: 211 MLAYGVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCA 270

Query: 106 ------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLF-NFFRGSGLVPNAVTMLTVIR 158
                 LF+ L  P  +   +I++    N  F +A+  F +  R  G+ P+  T  TV+ 
Sbjct: 271 LDDARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLT 330

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C  LG     + +H   I  G   +V V +S++DMY     +  + +IF  M  K+ +S
Sbjct: 331 ACGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVS 390

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           W+ ++G +         ++IFR+M K  + C       ++   A L  +++GK++H Q +
Sbjct: 391 WSALLGGYCQNGDFKSVIQIFRKMEKVDLYC----FGTILRTCAGLAAVRQGKEVHCQYI 446

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
             G   ++ + ++++ +Y+KCG ++ ++++F+Q+  ++L++W ++I G+ QNG   EAL 
Sbjct: 447 RKGGWRDVIVESALVDLYAKCGCIEYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALR 506

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALE-----ICLQLHGIAFEAGFPRYRSVQNC 393
            F +M +E     D I+ + IL A      ++               + G   Y    +C
Sbjct: 507 IFNQMVKEGIKP-DYISFIGILFACSHRGLVDEGREYFISMTKDYGIKVGIEHY----SC 561

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           ++    + G ++ A I+ E   F  D   W  ++       + E A  +  ++ E    P
Sbjct: 562 MVDLLGRAGLLEEAEILIETSDFRDDSSLWAALLGACTTCTNYEIAERIAKRVMELE--P 619

Query: 454 DSS-TYLSILNACGHAGLTNDGLVIFNQM 481
           D   +Y+ + N     G  ND L I   M
Sbjct: 620 DYHLSYVLLANVYKAVGRWNDALRIRRLM 648



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 124/250 (49%), Gaps = 4/250 (1%)

Query: 235 ALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIA 294
           AL++ + +    I    V   +L+     +     G Q+HA V+  GL+ +  + NS++ 
Sbjct: 102 ALQLLKSIDPGEISAKPVLYASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRFVGNSLLT 161

Query: 295 MYSKCG-DLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDS 353
           +Y K G D   +R VF+ +  K ++SWT++ISGYV+ G    +L  F KM     +  ++
Sbjct: 162 LYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEP-NA 220

Query: 354 ITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEE 413
            TL +++ A  EL  L++    HG+    GF     + + LI  + +   +D A  +F+E
Sbjct: 221 FTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDE 280

Query: 414 MGFLRDVVSWNTIIYGYGVNGHGETALALYHKMT-ETGEVPDSSTYLSILNACGHAGLTN 472
           +    D + W +II     N   + AL  ++ M  + G  PD  T+ ++L ACG+ G   
Sbjct: 281 L-LEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLK 339

Query: 473 DGLVIFNQMI 482
            G  +  ++I
Sbjct: 340 QGKEVHAKVI 349


>gi|225438593|ref|XP_002276456.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial [Vitis vinifera]
 gi|296082485|emb|CBI21490.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  239 bits (609), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 161/526 (30%), Positives = 261/526 (49%), Gaps = 26/526 (4%)

Query: 35  NVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIH 94
            V  W+  I      G+  K++  F  M  +GL PN+ T   V  A + L NL+ ++ +H
Sbjct: 18  TVAQWNSSITESVNQGYAHKALLLFRQMKQNGLEPNNLTFPSVAKACSKLLNLKYSQIVH 77

Query: 95  GLMVKFGLESDLF----------------------EGLKNPYLVSCNAIVAGFINNKLFQ 132
             +VK   ++DLF                        +    + S N+++ GF       
Sbjct: 78  THVVKSRFQADLFVQTSVVDMYVKCSQLGFAYNLFSRMPKRDVASWNSMILGFAQLGFVD 137

Query: 133 QAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVL 192
           + V LF      G+  ++VT++ +    ++L    + E IH   IK+G+  DVSV+N+ +
Sbjct: 138 RVVSLFCEMGIEGIRADSVTVIGLTHSALSLKDLKMLESIHSFGIKIGIDTDVSVSNTWI 197

Query: 193 DMYSCLMDLDAAIQIFREME--CKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICD 250
             Y+   +   A  +F  ++   K  +SW  M+  +  FE    A+  F++M       D
Sbjct: 198 AAYAKCGEFGLAETVFDGIDKGLKTGVSWNSMIAGYAHFEQCSKAVGFFKKMLCGGFRAD 257

Query: 251 TVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFN 310
              +L+L+S       L  GK +HA  +  G  S++++ N++I+MYSKCGD+ S+R +F+
Sbjct: 258 LSTILSLLSSCVQPEVLFHGKLIHAHGIQVGCDSDIQVINTLISMYSKCGDIGSARYLFD 317

Query: 311 QITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALE 370
            +  K+ VSWTA+I+GY + G   EA+  F  M +   +  D +T++S+++  G+  ALE
Sbjct: 318 NMLGKTRVSWTAMIAGYAEKGDLDEAMTLFSAM-EAVGEKPDLVTIISLMSGCGQTGALE 376

Query: 371 ICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGY 430
           +   +   A   G      V N LI  Y+KCG++D A  +F  M   + +VSW T+I G 
Sbjct: 377 LGKWIDTYATANGLKDNLMVCNALIDVYAKCGSMDNARELFYTMP-EKSLVSWTTLIAGC 435

Query: 431 GVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPS 490
            +NG  + AL L+ +M E G  P+  T+L++L AC HAG    G   FN M +  K+ P 
Sbjct: 436 ALNGEFKEALGLFFQMVELGLKPNHITFLAVLQACNHAGFLEKGWECFNLMTKVYKINPG 495

Query: 491 QEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
            +HY C+ DLL R G L +A      +       IW  LLS C +H
Sbjct: 496 LDHYSCMADLLGRKGRLKEAFEFIQNMPFKPDVGIWSVLLSACKIH 541



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 137/519 (26%), Positives = 247/519 (47%), Gaps = 42/519 (8%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + ++  Y K  ++  A NLF  +P+++V SW+ +I G++  GF ++ +  F  M 
Sbjct: 88  DLFVQTSVVDMYVKCSQLGFAYNLFSRMPKRDVASWNSMILGFAQLGFVDRVVSLFCEMG 147

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------- 106
           + G+  +S T++G+  +A  L++L++  SIH   +K G+++D+                 
Sbjct: 148 IEGIRADSVTVIGLTHSALSLKDLKMLESIHSFGIKIGIDTDVSVSNTWIAAYAKCGEFG 207

Query: 107 -----FEGLKNPYL--VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                F+G+       VS N+++AG+ + +   +AV  F      G   +  T+L+++  
Sbjct: 208 LAETVFDGIDKGLKTGVSWNSMIAGYAHFEQCSKAVGFFKKMLCGGFRADLSTILSLLSS 267

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           CV        +LIH   I++G   D+ V N+++ MYS   D+ +A  +F  M  K  +SW
Sbjct: 268 CVQPEVLFHGKLIHAHGIQVGCDSDIQVINTLISMYSKCGDIGSARYLFDNMLGKTRVSW 327

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           T M+  + +     +A+ +F  M       D V +++L+S     G L+ GK +      
Sbjct: 328 TAMIAGYAEKGDLDEAMTLFSAMEAVGEKPDLVTIISLMSGCGQTGALELGKWIDTYATA 387

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            GL+  L + N++I +Y+KCG +D++R +F  + EKSLVSWT +I+G   NG  +EAL  
Sbjct: 388 NGLKDNLMVCNALIDVYAKCGSMDNARELFYTMPEKSLVSWTTLIAGCALNGEFKEALGL 447

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEI---CLQLHGIAFE--AGFPRYRSVQNCL 394
           F +M  E     + IT +++L A      LE    C  L    ++   G   Y    +C+
Sbjct: 448 FFQMV-ELGLKPNHITFLAVLQACNHAGFLEKGWECFNLMTKVYKINPGLDHY----SCM 502

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGH---GETALALYHKMTETGE 451
                + G +  A+   + M F  DV  W+ ++    ++ +   GE       ++     
Sbjct: 503 ADLLGRKGRLKEAFEFIQNMPFKPDVGIWSVLLSACKIHQNVVIGECVAYHLFELEPQTA 562

Query: 452 VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPS 490
           VP    Y+ + N    AG   D +     M++ NK   S
Sbjct: 563 VP----YVQMANIYASAG-KWDRVAAIRTMMKCNKAMKS 596



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 130/445 (29%), Positives = 217/445 (48%), Gaps = 12/445 (2%)

Query: 107 FEGLKNPYLVS-CNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           F    N + V+  N+ +   +N     +A+LLF   + +GL PN +T  +V + C  L +
Sbjct: 10  FNRFSNLWTVAQWNSSITESVNQGYAHKALLLFRQMKQNGLEPNNLTFPSVAKACSKLLN 69

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
               +++H   +K     D+ V  SV+DMY     L  A  +F  M  +DV SW  M+  
Sbjct: 70  LKYSQIVHTHVVKSRFQADLFVQTSVVDMYVKCSQLGFAYNLFSRMPKRDVASWNSMILG 129

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           F    +    + +F EM    I  D+V ++ L      L DLK  + +H+  +  G+ ++
Sbjct: 130 FAQLGFVDRVVSLFCEMGIEGIRADSVTVIGLTHSALSLKDLKMLESIHSFGIKIGIDTD 189

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITE--KSLVSWTAIISGYVQNGCAREALNQFIKM 343
           + +SN+ IA Y+KCG+   + +VF+ I +  K+ VSW ++I+GY       +A+  F KM
Sbjct: 190 VSVSNTWIAAYAKCGEFGLAETVFDGIDKGLKTGVSWNSMIAGYAHFEQCSKAVGFFKKM 249

Query: 344 R--QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
                + D    ++L+S       L   ++ +  HGI  + G      V N LIS YSKC
Sbjct: 250 LCGGFRADLSTILSLLSSCVQPEVLFHGKL-IHAHGI--QVGCDSDIQVINTLISMYSKC 306

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G++  A  +F+ M   +  VSW  +I GY   G  + A+ L+  M   GE PD  T +S+
Sbjct: 307 GDIGSARYLFDNM-LGKTRVSWTAMIAGYAEKGDLDEAMTLFSAMEAVGEKPDLVTIISL 365

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           ++ CG  G    G  I +     N +K +      ++D+ A+ G + +A  L   + E  
Sbjct: 366 MSGCGQTGALELGKWI-DTYATANGLKDNLMVCNALIDVYAKCGSMDNARELFYTMPEKS 424

Query: 522 GPNIWRALLSGCVLHVGRFQDAEAL 546
             + W  L++GC L+ G F++A  L
Sbjct: 425 LVS-WTTLIAGCALN-GEFKEALGL 447


>gi|359483750|ref|XP_002269533.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Vitis vinifera]
          Length = 847

 Score =  239 bits (609), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 171/628 (27%), Positives = 291/628 (46%), Gaps = 106/628 (16%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y  + LL  Y K   I +A   F ++PE N VS++ ++ G + +    ++ + F  M+ +
Sbjct: 173 YVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRN 232

Query: 66  GLLPNSFTMVGVLVAAA-------GLQ--NLELARSIHG-----LMVKFGLESDL----- 106
            +  +S ++  VL   +       GL   N  L+  +HG     L +K G ESDL     
Sbjct: 233 RIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNS 292

Query: 107 -----------------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPN 149
                            F  +    +VS N ++AG+       +A+      +  G  P+
Sbjct: 293 LLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPD 352

Query: 150 AVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFR 209
            +T + ++  C+  G                                   D++A  Q+F 
Sbjct: 353 EITYVNMLVACIKSG-----------------------------------DIEAGRQMFD 377

Query: 210 EMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKR 269
            M    + SW  ++  +   E   +A+K+FREM+   +  D   L  ++S  A +  L+ 
Sbjct: 378 GMSSPSLSSWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGMMLLEG 437

Query: 270 GKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQ 329
           G+Q+HA       ++++ L++ +I MYSKCG ++ ++ +F++I E  +V W ++++G   
Sbjct: 438 GRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSL 497

Query: 330 NGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS 389
           N   +EA   F KMR EK       +  ++L+   +L++L    Q+H      G+     
Sbjct: 498 NSLDKEAFTFFKKMR-EKGMFPSQFSYATVLSCCAKLSSLSQGRQVHSQIAREGYMNDAF 556

Query: 390 VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
           V + LI  YSKCG+VD A  VF+ M   ++ V+WN +I+GY  NG G+ A+ LY  M  +
Sbjct: 557 VGSALIDMYSKCGDVDAARWVFDMM-LGKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIGS 615

Query: 450 GEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSD 509
           GE PD  T++++L AC H+GL + G+ IFN M +E+ V+P  +HY C++D L RAG L +
Sbjct: 616 GEKPDGITFVAVLTACSHSGLVDTGIKIFNSMQQEHGVEPLVDHYTCIIDSLGRAGRLHE 675

Query: 510 ASGLAGKLLEGMGPNIWRALLSGCVLH--------------------------------- 536
           A  L  K+     P IW  LLS C ++                                 
Sbjct: 676 AEVLIDKMPCKYDPIIWEVLLSSCRVYADVSLARRAAEELFHLDPQNSAPYVLLANIYSS 735

Query: 537 VGRFQDAEALRSGSQKKGIIKIPGISFL 564
           +GR+ DA+A+R       ++K PG S++
Sbjct: 736 LGRWDDAKAVRELMSYNQVVKDPGYSWI 763



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 145/568 (25%), Positives = 263/568 (46%), Gaps = 75/568 (13%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  D Y  + +L  Y K+ ++++A  LF E+PE+N+VSW+ +I   + NGF +K++  + 
Sbjct: 67  PKRDIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGFEQKALGVYY 126

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG----------- 109
            M   G +P  FT+  VL A   L ++E  R  HG+ +K GL+++++ G           
Sbjct: 127 RMSREGFVPTHFTLASVLSACGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCR 186

Query: 110 -----------LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                      +  P  VS  A++ G  ++    +A  LF     + +  ++V++ +V+ 
Sbjct: 187 CIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLG 246

Query: 159 GCV--------------ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAA 204
            C                L S    + +H LTIK G   D+ +NNS+LDMY+   ++D+A
Sbjct: 247 VCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSA 306

Query: 205 IQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAIL 264
             IF  M    V+SW  M+  +     +  A++  + M+      D +  +N++      
Sbjct: 307 EMIFVNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKS 366

Query: 265 GDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAII 324
           GD++ G+Q+                                   F+ ++  SL SW  I+
Sbjct: 367 GDIEAGRQM-----------------------------------FDGMSSPSLSSWNTIL 391

Query: 325 SGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGF 384
           SGY QN   +EA+  F +M Q ++   D  TL  IL++   +  LE   Q+H ++ +A F
Sbjct: 392 SGYSQNENHKEAVKLFREM-QFRSVHPDRTTLAIILSSLAGMMLLEGGRQVHAVSQKAVF 450

Query: 385 PRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH 444
                + + LI  YSKCG V++A  +F+ +  L D+V WN+++ G  +N   + A   + 
Sbjct: 451 RTDIYLASGLIGMYSKCGKVEMAKRIFDRIAEL-DIVCWNSMMAGLSLNSLDKEAFTFFK 509

Query: 445 KMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARA 504
           KM E G  P   +Y ++L+ C      + G  + +Q+  E  +  +      ++D+ ++ 
Sbjct: 510 KMREKGMFPSQFSYATVLSCCAKLSSLSQGRQVHSQIAREGYMNDAFVG-SALIDMYSKC 568

Query: 505 GCLSDASGLAGKLLEGMGPNIWRALLSG 532
           G + DA+     ++ G     W  ++ G
Sbjct: 569 GDV-DAARWVFDMMLGKNTVTWNEMIHG 595



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 90/374 (24%), Positives = 167/374 (44%), Gaps = 47/374 (12%)

Query: 153 MLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME 212
           + ++++ C+   +    +LIH   ++  L  D  ++N +++ Y+    +DA+ ++F +M 
Sbjct: 8   LASLLQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMP 67

Query: 213 CKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIIC----------------------- 249
            +D+ +W  ++G +       DA  +F EM +  I+                        
Sbjct: 68  KRDIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGFEQKALGVYYR 127

Query: 250 --------DTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGD 301
                       L +++S    L D++ G++ H   +  GL + + + N+++ MY+KC  
Sbjct: 128 MSREGFVPTHFTLASVLSACGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRC 187

Query: 302 LDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILT 361
           +  +   F  + E + VS+TA++ G   +    EA   F  M + +   VDS++L S+L 
Sbjct: 188 IGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRI-HVDSVSLSSVLG 246

Query: 362 ASGELAALEICL--------------QLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
                   E  L              Q+H +  + GF     + N L+  Y+K GN+D A
Sbjct: 247 VCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSA 306

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
            ++F  M  +  VVSWN +I GYG       A+    +M   G  PD  TY+++L AC  
Sbjct: 307 EMIFVNMPEV-SVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIK 365

Query: 468 AGLTNDGLVIFNQM 481
           +G    G  +F+ M
Sbjct: 366 SGDIEAGRQMFDGM 379



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 112/246 (45%), Gaps = 36/246 (14%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y +S L+  Y K GK++ A+ +FD I E ++V W+ ++ G S+N   +++   F  M 
Sbjct: 453 DIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSLNSLDKEAFTFFKKMR 512

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPY------- 114
             G+ P+ F+   VL   A L +L   R +H  + + G  +D F G  L + Y       
Sbjct: 513 EKGMFPSQFSYATVLSCCAKLSSLSQGRQVHSQIAREGYMNDAFVGSALIDMYSKCGDVD 572

Query: 115 -------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                         V+ N ++ G+  N    +AVLL+    GSG  P+ +T + V+  C 
Sbjct: 573 AARWVFDMMLGKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIGSGEKPDGITFVAVLTACS 632

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMD-------LDAAIQIFREMECK 214
             G      +  G+ I   +  +  V   ++D Y+C++D       L  A  +  +M CK
Sbjct: 633 HSGL-----VDTGIKIFNSMQQEHGV-EPLVDHYTCIIDSLGRAGRLHEAEVLIDKMPCK 686

Query: 215 -DVISW 219
            D I W
Sbjct: 687 YDPIIW 692



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 110/255 (43%), Gaps = 34/255 (13%)

Query: 270 GKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQ------------------ 311
           GK +HA ++   L  +  LSN +I  Y+KC  +D+SR +F+Q                  
Sbjct: 24  GKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMPKRDIYTWNAILGAYCK 83

Query: 312 -------------ITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVS 358
                        + E+++VSW  +IS   +NG  ++AL  + +M +E        TL S
Sbjct: 84  ASELEDAHVLFAEMPERNIVSWNTLISALTRNGFEQKALGVYYRMSREGFVPT-HFTLAS 142

Query: 359 ILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLR 418
           +L+A G L  +E   + HGI+ + G      V N L+  Y+KC  +  A   F ++    
Sbjct: 143 VLSACGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPN 202

Query: 419 DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIF 478
           + VS+  ++ G   +     A  L+  M       DS +  S+L  C   G    GL   
Sbjct: 203 E-VSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGLHDS 261

Query: 479 NQMIEENKVKPSQEH 493
           N ++  + V   Q H
Sbjct: 262 NDVLSSD-VHGQQVH 275


>gi|334186228|ref|NP_191896.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332646951|gb|AEE80472.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 884

 Score =  239 bits (609), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 167/617 (27%), Positives = 300/617 (48%), Gaps = 70/617 (11%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEK-NVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLP 69
           L+S Y K+  +  A  LFD   EK + V W+ ++  YS +G   ++++ F  M ++G  P
Sbjct: 223 LVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAP 282

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-----------------------L 106
           NS+T+V  L A  G    +L + IH  ++K    S                        +
Sbjct: 283 NSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERI 342

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
              + N  +V+ N+++ G++ N ++++A+  F+    +G   + V+M ++I     L + 
Sbjct: 343 LRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNL 402

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYS-----CLMDLDAAIQIFREMECKDVISWTR 221
                +H   IK G   ++ V N+++DMYS     C M      + F  M  KD+ISWT 
Sbjct: 403 LAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMG-----RAFLRMHDKDLISWTT 457

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++  +   +   +AL++FR++ K R+  D + L +++  +++L  +   K++H  ++  G
Sbjct: 458 VIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKG 517

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           L   + + N ++ +Y KC ++  +  VF  I  K +VSWT++IS    NG   EA+  F 
Sbjct: 518 LLDTV-IQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFR 576

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +M  E   S DS+ L+ IL+A+  L+AL    ++H      GF    S+   ++  Y+ C
Sbjct: 577 RM-VETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACC 635

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G++  A  VF+ +   + ++ + ++I  YG++G G+ A+ L+ KM      PD  ++L++
Sbjct: 636 GDLQSAKAVFDRIE-RKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLAL 694

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L AC HAGL ++G      M  E +++P  EHY C+VD+L RA C+ +A      +    
Sbjct: 695 LYACSHAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEP 754

Query: 522 GPNIWRALLSGCVLHV---------------------------------GRFQDAEALRS 548
              +W ALL+ C  H                                  GR+ D E +R+
Sbjct: 755 TAEVWCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRA 814

Query: 549 GSQKKGIIKIPGISFLN 565
             +  G+ K PG S++ 
Sbjct: 815 KMKASGMEKHPGCSWIE 831



 Score =  198 bits (503), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 142/492 (28%), Positives = 243/492 (49%), Gaps = 27/492 (5%)

Query: 10  KLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLP 69
           KL+  Y K G + +AE +FDE+P++   +W+ +I  Y  NG    ++  + +M + G+  
Sbjct: 121 KLVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPL 180

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LF 107
              +   +L A A L+++     +H L+VK G  S                       LF
Sbjct: 181 GLSSFPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLF 240

Query: 108 EGLKNP-YLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           +G +     V  N+I++ +  +    + + LF     +G  PN+ T+++ +  C      
Sbjct: 241 DGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYA 300

Query: 167 ALCELIHGLTIKLGL-ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
            L + IH   +K      ++ V N+++ MY+    +  A +I R+M   DV++W  ++  
Sbjct: 301 KLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKG 360

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +V      +AL+ F +M  +    D V++ ++I+ +  L +L  G +LHA V+  G  S 
Sbjct: 361 YVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSN 420

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           L++ N++I MYSKC         F ++ +K L+SWT +I+GY QN C  EAL  F  + +
Sbjct: 421 LQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAK 480

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
           ++ + +D + L SIL AS  L ++ I  ++H      G      +QN L+  Y KC N+ 
Sbjct: 481 KRME-IDEMILGSILRASSVLKSMLIVKEIHCHILRKGLLD-TVIQNELVDVYGKCRNMG 538

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            A  VFE +   +DVVSW ++I    +NG+   A+ L+ +M ETG   DS   L IL+A 
Sbjct: 539 YATRVFESIKG-KDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSAA 597

Query: 466 GHAGLTNDGLVI 477
                 N G  I
Sbjct: 598 ASLSALNKGREI 609



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 103/379 (27%), Positives = 204/379 (53%), Gaps = 24/379 (6%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y  + L++ Y + GK+ +AE +  ++   +VV+W+ +I GY  N  ++++++ FS M+ +
Sbjct: 321 YVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAA 380

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL------------------- 106
           G   +  +M  ++ A+  L NL     +H  ++K G +S+L                   
Sbjct: 381 GHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYM 440

Query: 107 ---FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
              F  + +  L+S   ++AG+  N    +A+ LF       +  + + + +++R    L
Sbjct: 441 GRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVL 500

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
            S  + + IH   ++ GL LD  + N ++D+Y    ++  A ++F  ++ KDV+SWT M+
Sbjct: 501 KSMLIVKEIHCHILRKGL-LDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMI 559

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
                     +A+++FR M ++ +  D+VALL ++S  A L  L +G+++H  ++  G  
Sbjct: 560 SSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFC 619

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
            E  ++ +++ MY+ CGDL S+++VF++I  K L+ +T++I+ Y  +GC + A+  F KM
Sbjct: 620 LEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKM 679

Query: 344 RQEKTDSVDSITLVSILTA 362
           R E   S D I+ +++L A
Sbjct: 680 RHENV-SPDHISFLALLYA 697



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 128/271 (47%), Gaps = 7/271 (2%)

Query: 267 LKRGKQLHAQVVLGGLQSELR-LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIIS 325
           + +G+QLH+++       EL  L+  ++ MY KCG LD +  VF+++ +++  +W  +I 
Sbjct: 96  VSQGRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIG 155

Query: 326 GYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFP 385
            YV NG    AL  +  MR E    +   +  ++L A  +L  +    +LH +  + G+ 
Sbjct: 156 AYVSNGEPASALALYWNMRVEGV-PLGLSSFPALLKACAKLRDIRSGSELHSLLVKLGYH 214

Query: 386 RYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHK 445
               + N L+S Y+K  ++  A  +F+      D V WN+I+  Y  +G     L L+ +
Sbjct: 215 STGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFRE 274

Query: 446 MTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGC--VVDLLAR 503
           M  TG  P+S T +S L AC        G  I   +++ +    S E Y C  ++ +  R
Sbjct: 275 MHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSS--THSSELYVCNALIAMYTR 332

Query: 504 AGCLSDASGLAGKLLEGMGPNIWRALLSGCV 534
            G +  A  +  + +       W +L+ G V
Sbjct: 333 CGKMPQAERIL-RQMNNADVVTWNSLIKGYV 362



 Score = 47.0 bits (110), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 86/184 (46%), Gaps = 22/184 (11%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D    ++L+  Y K   +  A  +F+ I  K+VVSW+ +I   ++NG   ++++ F  M
Sbjct: 519 LDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRM 578

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK--FGLESDL-------------- 106
           + +GL  +S  ++ +L AAA L  L   R IH  +++  F LE  +              
Sbjct: 579 VETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDL 638

Query: 107 ------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                 F+ ++   L+   +++  +  +   + AV LF+  R   + P+ ++ L ++  C
Sbjct: 639 QSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYAC 698

Query: 161 VALG 164
              G
Sbjct: 699 SHAG 702


>gi|242093006|ref|XP_002436993.1| hypothetical protein SORBIDRAFT_10g014210 [Sorghum bicolor]
 gi|241915216|gb|EER88360.1| hypothetical protein SORBIDRAFT_10g014210 [Sorghum bicolor]
          Length = 698

 Score =  239 bits (609), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 161/562 (28%), Positives = 278/562 (49%), Gaps = 41/562 (7%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML---- 64
           + LL  Y        A  LFDE+  +N+VSWS+VI G + +G   ++   FSHM+     
Sbjct: 65  NNLLHAYLSRSVPAHARRLFDEMSRRNLVSWSVVISGSARHGVLAEAFALFSHMLHGAGQ 124

Query: 65  -SGLLPNSFTMVGVLVAAAG-LQNLELARSIHGLMVKFGLESD----------------- 105
            S   P+SF M+G LVA     ++++    +H  + KFG++ D                 
Sbjct: 125 GSWDRPDSF-MLGALVAGCSRARHVDAGVQVHACVAKFGVDEDESVAAALVDMYAKCGWV 183

Query: 106 -----LFEGLKNPYLVSCNAIVAGFIN---NKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
                 F       ++S  +++A  +N   +     A+LLF       + P  VT   ++
Sbjct: 184 DSSWRAFTLAPQRSVLSWTSMIACLVNQGSSGYHDAAMLLFKKMLALKVWPTNVTFSCIL 243

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK--- 214
           +        ++   IHG  +K+G  +D ++ ++++ MY     +D   +I R + C+   
Sbjct: 244 KVFNTPDLLSVGMQIHGCLLKIGTEVDTALGSALMTMYGRCGGVD---EIAR-LACRIRH 299

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
           DV S T ++G +    Y  +A+ +F+EM  + +  D  A+  L+ V + +G L+  +++H
Sbjct: 300 DVFSRTSLLGAYARNGYNAEAIGVFKEMILTNMAIDQSAMTCLLQVCSSVGQLRMVREVH 359

Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
              +    + +  L N+II +Y +CGD  S+ +VFN + E+ ++SWTA+++ Y QNG   
Sbjct: 360 CYALKTFFKLDTLLLNAIITVYGRCGDTTSAETVFNLMEEQDIISWTALLTCYAQNGLDE 419

Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
           E L  F +M +    S     + S+L A    + L I LQ+H    + G     SV+N L
Sbjct: 420 EVLLFFREMLRRGLGS-PVFCMTSVLRACSRTSNLAIGLQIHSRTVKLGIDDDNSVENAL 478

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           ++ Y+ CG+V +A  +F  M   RD+V+WN ++  +  +G+   A+ L+  M E    PD
Sbjct: 479 VTLYANCGSVQVALKIFNSMSN-RDIVTWNALLTSFSQHGNEVAAIQLFDLMQEEEVCPD 537

Query: 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLA 514
             T++ +L++C   GL  +G   FN+M  +  ++P   HY C+VDL ARAG   DA    
Sbjct: 538 DYTFVGLLSSCSRMGLVKEGCEYFNEMKAKYNLEPKMVHYTCMVDLFARAGRFCDAMDFI 597

Query: 515 GKLLEGMGPNIWRALLSGCVLH 536
             +       +W ALL+ C +H
Sbjct: 598 DAMPYEPDQILWEALLASCKIH 619



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 92/457 (20%), Positives = 202/457 (44%), Gaps = 26/457 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIH---GYSINGFHEKSMKAFS 60
           D   ++ L+  Y K G +  +   F   P+++V+SW+ +I        +G+H+ +M  F 
Sbjct: 166 DESVAAALVDMYAKCGWVDSSWRAFTLAPQRSVLSWTSMIACLVNQGSSGYHDAAMLLFK 225

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--LFEGLKNPY---- 114
            M+   + P + T   +L        L +   IHG ++K G E D  L   L   Y    
Sbjct: 226 KMLALKVWPTNVTFSCILKVFNTPDLLSVGMQIHGCLLKIGTEVDTALGSALMTMYGRCG 285

Query: 115 ---------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                          + S  +++  +  N    +A+ +F     + +  +   M  +++ 
Sbjct: 286 GVDEIARLACRIRHDVFSRTSLLGAYARNGYNAEAIGVFKEMILTNMAIDQSAMTCLLQV 345

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C ++G   +   +H   +K    LD  + N+++ +Y    D  +A  +F  ME +D+ISW
Sbjct: 346 CSSVGQLRMVREVHCYALKTFFKLDTLLLNAIITVYGRCGDTTSAETVFNLMEEQDIISW 405

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           T ++  +       + L  FREM +  +      + +++   +   +L  G Q+H++ V 
Sbjct: 406 TALLTCYAQNGLDEEVLLFFREMLRRGLGSPVFCMTSVLRACSRTSNLAIGLQIHSRTVK 465

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G+  +  + N+++ +Y+ CG +  +  +FN ++ + +V+W A+++ + Q+G    A+ Q
Sbjct: 466 LGIDDDNSVENALVTLYANCGSVQVALKIFNSMSNRDIVTWNALLTSFSQHGNEVAAI-Q 524

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAAL-EICLQLHGIAFEAGFPRYRSVQNCLISSY 398
              + QE+    D  T V +L++   +  + E C   + +  +           C++  +
Sbjct: 525 LFDLMQEEEVCPDDYTFVGLLSSCSRMGLVKEGCEYFNEMKAKYNLEPKMVHYTCMVDLF 584

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGH 435
           ++ G    A    + M +  D + W  ++    ++G+
Sbjct: 585 ARAGRFCDAMDFIDAMPYEPDQILWEALLASCKIHGN 621



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 140/305 (45%), Gaps = 11/305 (3%)

Query: 173 HGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYA 232
           HG+ IKLG I    + N++L  Y        A ++F EM  ++++SW+ ++         
Sbjct: 49  HGVAIKLGCIASTFLCNNLLHAYLSRSVPAHARRLFDEMSRRNLVSWSVVISGSARHGVL 108

Query: 233 GDALKIFREM-----RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
            +A  +F  M     + S    D+  L  L++  +    +  G Q+HA V   G+  +  
Sbjct: 109 AEAFALFSHMLHGAGQGSWDRPDSFMLGALVAGCSRARHVDAGVQVHACVAKFGVDEDES 168

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA---REALNQFIKMR 344
           ++ +++ MY+KCG +DSS   F    ++S++SWT++I+  V  G +     A+  F KM 
Sbjct: 169 VAAALVDMYAKCGWVDSSWRAFTLAPQRSVLSWTSMIACLVNQGSSGYHDAAMLLFKKML 228

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
             K    + +T   IL        L + +Q+HG   + G     ++ + L++ Y +CG V
Sbjct: 229 ALKVWPTN-VTFSCILKVFNTPDLLSVGMQIHGCLLKIGTEVDTALGSALMTMYGRCGGV 287

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           D   I         DV S  +++  Y  NG+   A+ ++ +M  T    D S    +L  
Sbjct: 288 D--EIARLACRIRHDVFSRTSLLGAYARNGYNAEAIGVFKEMILTNMAIDQSAMTCLLQV 345

Query: 465 CGHAG 469
           C   G
Sbjct: 346 CSSVG 350



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 106/228 (46%), Gaps = 13/228 (5%)

Query: 267 LKRGKQLHAQ----VVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTA 322
           L+ G   H+     + LG + S   L N+++  Y        +R +F++++ ++LVSW+ 
Sbjct: 39  LRSGGHPHSAHGVAIKLGCIASTF-LCNNLLHAYLSRSVPAHARRLFDEMSRRNLVSWSV 97

Query: 323 IISGYVQNGCAREALNQFIKMR----QEKTDSVDSITLVSILTASGELAALEICLQLHGI 378
           +ISG  ++G   EA   F  M     Q   D  DS  L +++        ++  +Q+H  
Sbjct: 98  VISGSARHGVLAEAFALFSHMLHGAGQGSWDRPDSFMLGALVAGCSRARHVDAGVQVHAC 157

Query: 379 AFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII---YGYGVNGH 435
             + G     SV   L+  Y+KCG VD ++  F  +   R V+SW ++I      G +G+
Sbjct: 158 VAKFGVDEDESVAAALVDMYAKCGWVDSSWRAF-TLAPQRSVLSWTSMIACLVNQGSSGY 216

Query: 436 GETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIE 483
            + A+ L+ KM      P + T+  IL       L + G+ I   +++
Sbjct: 217 HDAAMLLFKKMLALKVWPTNVTFSCILKVFNTPDLLSVGMQIHGCLLK 264


>gi|357485423|ref|XP_003612999.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355514334|gb|AES95957.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 676

 Score =  238 bits (608), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 152/444 (34%), Positives = 243/444 (54%), Gaps = 9/444 (2%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           LF+ + N ++V+ N++++  ++    ++A+ L++     G++P+A T   + +    +G 
Sbjct: 57  LFDEMPNRHIVTWNSMISSHVSRGKTKEAIELYDNMLFEGVLPDAYTFSAIFKAFSEMGV 116

Query: 166 RALCELIHGLTIKLGL-ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
               +  HGL + LG  + D  V   ++DMY+    +  A  +F  +  KDV+ +T ++ 
Sbjct: 117 SREGQKAHGLAVVLGFEVSDGFVATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALIV 176

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            +      G+AL++F +M  SRI  +   L +++     LGDL  GK +H  VV  GL+S
Sbjct: 177 GYNQRGLDGEALEVFEDMVGSRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKSGLES 236

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
            +    S++ MYSKC  ++ S  VFN +   S V+WT+ I G VQNG    AL+ F +M 
Sbjct: 237 VVASQTSLLTMYSKCNMVEDSIKVFNSLAYASHVTWTSFIVGLVQNGREEIALSMFREMI 296

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
           +    S +  T  SIL A   LA LE   Q+H +  + G    + V   LI  Y KCGNV
Sbjct: 297 RCSI-SPNHFTFSSILHACSSLAMLEAGEQIHAVTVKLGVDGNKYVDAALIHLYGKCGNV 355

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           + A  VFE +  L DVVS NT+IY Y  NG G  AL L+ +M + G  P+  T++SIL A
Sbjct: 356 EKARSVFESLTEL-DVVSINTMIYAYAQNGFGHEALELFERMKKLGHKPNVVTFISILLA 414

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C +AGL  +G  IF+ +   + ++ +++HY C++DLL RA    +A+ L   + EG  P+
Sbjct: 415 CNNAGLVEEGCQIFSLIRNNHSIELTRDHYTCMIDLLGRAKRFEEAAML---IEEGKNPD 471

Query: 525 I--WRALLSGCVLHVGRFQDAEAL 546
           +  WR LL+ C +H G  + AE  
Sbjct: 472 VIQWRTLLNACKIH-GEVEMAEKF 494



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 133/485 (27%), Positives = 231/485 (47%), Gaps = 29/485 (5%)

Query: 10  KLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLP 69
           KL+  Y K   I EA  LFDE+P +++V+W+ +I  +   G  +++++ + +M+  G+LP
Sbjct: 40  KLIDGYIKCSVITEARKLFDEMPNRHIVTWNSMISSHVSRGKTKEAIELYDNMLFEGVLP 99

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE-SD----------------------L 106
           +++T   +  A + +      +  HGL V  G E SD                      +
Sbjct: 100 DAYTFSAIFKAFSEMGVSREGQKAHGLAVVLGFEVSDGFVATGIVDMYAKFGKMKDARFV 159

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           F+ + +  +V   A++ G+    L  +A+ +F    GS + PN  T+ +V+  C  LG  
Sbjct: 160 FDRVLDKDVVLFTALIVGYNQRGLDGEALEVFEDMVGSRIKPNEYTLASVLVSCGNLGDL 219

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
              +LIHGL +K GL   V+   S+L MYS    ++ +I++F  +     ++WT  +   
Sbjct: 220 VNGKLIHGLVVKSGLESVVASQTSLLTMYSKCNMVEDSIKVFNSLAYASHVTWTSFIVGL 279

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
           V       AL +FREM +  I  +     +++   + L  L+ G+Q+HA  V  G+    
Sbjct: 280 VQNGREEIALSMFREMIRCSISPNHFTFSSILHACSSLAMLEAGEQIHAVTVKLGVDGNK 339

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            +  ++I +Y KCG+++ +RSVF  +TE  +VS   +I  Y QNG   EAL  F +M++ 
Sbjct: 340 YVDAALIHLYGKCGNVEKARSVFESLTELDVVSINTMIYAYAQNGFGHEALELFERMKK- 398

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHG-IAFEAGFPRYRSVQNCLISSYSKCGNVD 405
                + +T +SIL A      +E   Q+   I         R    C+I    +    +
Sbjct: 399 LGHKPNVVTFISILLACNNAGLVEEGCQIFSLIRNNHSIELTRDHYTCMIDLLGRAKRFE 458

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNA 464
            A ++ EE G   DV+ W T++    ++G  E A     KM +  + P D  T++ + N 
Sbjct: 459 EAAMLIEE-GKNPDVIQWRTLLNACKIHGEVEMAEKFMKKMLD--QAPRDGGTHILLTNI 515

Query: 465 CGHAG 469
              AG
Sbjct: 516 YASAG 520



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 131/263 (49%), Gaps = 22/263 (8%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + ++ ++  Y K GK+K+A  +FD + +K+VV ++ +I GY+  G   ++++ F  M+
Sbjct: 136 DGFVATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALIVGYNQRGLDGEALEVFEDMV 195

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES------------------- 104
            S + PN +T+  VLV+   L +L   + IHGL+VK GLES                   
Sbjct: 196 GSRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKSGLESVVASQTSLLTMYSKCNMVE 255

Query: 105 ---DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +F  L     V+  + + G + N   + A+ +F       + PN  T  +++  C 
Sbjct: 256 DSIKVFNSLAYASHVTWTSFIVGLVQNGREEIALSMFREMIRCSISPNHFTFSSILHACS 315

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
           +L      E IH +T+KLG+  +  V+ +++ +Y    +++ A  +F  +   DV+S   
Sbjct: 316 SLAMLEAGEQIHAVTVKLGVDGNKYVDAALIHLYGKCGNVEKARSVFESLTELDVVSINT 375

Query: 222 MMGLFVDFEYAGDALKIFREMRK 244
           M+  +    +  +AL++F  M+K
Sbjct: 376 MIYAYAQNGFGHEALELFERMKK 398



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 98/208 (47%), Gaps = 5/208 (2%)

Query: 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
           K LH  ++  G        + +I  Y KC  +  +R +F+++  + +V+W ++IS +V  
Sbjct: 21  KSLHTHILKSGSLFSF-FGHKLIDGYIKCSVITEARKLFDEMPNRHIVTWNSMISSHVSR 79

Query: 331 GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS- 389
           G  +EA+  +  M  E     D+ T  +I  A  E+       + HG+A   GF      
Sbjct: 80  GKTKEAIELYDNMLFEGVLP-DAYTFSAIFKAFSEMGVSREGQKAHGLAVVLGFEVSDGF 138

Query: 390 VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
           V   ++  Y+K G +  A  VF+ +   +DVV +  +I GY   G    AL ++  M  +
Sbjct: 139 VATGIVDMYAKFGKMKDARFVFDRV-LDKDVVLFTALIVGYNQRGLDGEALEVFEDMVGS 197

Query: 450 GEVPDSSTYLSILNACGHAG-LTNDGLV 476
              P+  T  S+L +CG+ G L N  L+
Sbjct: 198 RIKPNEYTLASVLVSCGNLGDLVNGKLI 225


>gi|357484403|ref|XP_003612489.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513824|gb|AES95447.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 955

 Score =  238 bits (608), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 161/555 (29%), Positives = 273/555 (49%), Gaps = 32/555 (5%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ L+S Y +   +  AE +F E+  K++VSW+ ++ GY+ N    ++      M  +G 
Sbjct: 341 ANSLISLYSQCEAVDVAETVFREMAYKDIVSWNAMMEGYASNENIHEAFDLMVEMQTTGC 400

Query: 68  L-PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--------------------- 105
             P+  T+  +L   A L      R+IHG  ++  +  D                     
Sbjct: 401 FQPDIVTLTTMLPLCAELMLYREGRTIHGYAIRRHMVPDHLPLRNGLIDMYSKCNVVEKA 460

Query: 106 --LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
             LF       LVS NA+++G+  NK +++A  LF      G   ++ T+  ++  C + 
Sbjct: 461 ELLFHSTAQIDLVSWNAMISGYSQNKYYEKAQNLFKELLCCGQNCSSSTVFAILSSCNSA 520

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFRE-MECKDVISWTRM 222
            S    + +H   +K G +    + NS++ MY    DL +   I +E     D+ SW  +
Sbjct: 521 NSLNFGKSVHIWQLKSGFLNHTLLVNSLMQMYINSGDLTSGFSILQENSSIADIASWNTI 580

Query: 223 MGLFVDFEYAGDALKIFREMRK-SRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           +   V  +   +AL+ F  MR+      D++ L+N++S  A +  L +GK LH+  +   
Sbjct: 581 IVGCVRGDQFQEALETFMLMRQGPSFNYDSITLVNVLSAVANIELLNQGKSLHSLALKSP 640

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
             S+ R+ NS+I MY +C D++S+R VF   +  +L +W  +IS    N  +REAL  F 
Sbjct: 641 FGSDTRVQNSLITMYDRCRDINSARKVFKFHSISNLCTWNCMISALSHNKESREALELFR 700

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
            ++ +  +     T+VS+L+A   +  L    Q+HG  F  G+ +   +   L+  YS C
Sbjct: 701 HLQFKPNE----FTIVSVLSACTRIGVLIHGKQVHGYTFRYGYQQNSFISAALVDLYSTC 756

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G +D A  VF      +   +WN++I  YG +G+GE A+ L+H+M + G     ST++S+
Sbjct: 757 GRLDNAVKVFRHSQ--KSESAWNSMIAAYGNHGNGEKAIELFHEMCDLGIKVTKSTFVSL 814

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L+AC H+GL N GL  +  M+E+  +KP  EH   VV++LAR+G + +A      L    
Sbjct: 815 LSACSHSGLVNQGLQYYECMLEKYGIKPEAEHQVYVVNMLARSGRIDEAYQFTKGLQSNA 874

Query: 522 GPNIWRALLSGCVLH 536
              +W  LLS C  H
Sbjct: 875 SSGVWGMLLSVCNYH 889



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 144/468 (30%), Positives = 236/468 (50%), Gaps = 36/468 (7%)

Query: 24  AENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMK---AFSHMMLSGLLPNSFTMVGVLVA 80
           A NLFD++P++N               FH + +        + LS   PN FT   V  A
Sbjct: 78  AINLFDKMPQRN---------------FHVREVHFDLVVDCIKLSLEKPNIFTATVVHCA 122

Query: 81  A---AGLQNLELARSIHGLMVK---FGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQA 134
           A     L  L  + S+  L  K   F     LFE + N  +++ NAI++  + NK ++ A
Sbjct: 123 ALKTGALAYLPTSTSLFTLYSKAGDFTSSRVLFEHIHNRDVIAWNAIISASLENKCYRTA 182

Query: 135 VLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDM 194
           V  F          ++ T+L V+     L +     +IH ++IK G+++D+S+ N++++M
Sbjct: 183 VEFFQKMIKDQTRFDSTTLLLVVSTLSHLKNFGQGRVIHCVSIKSGMLVDISLCNALINM 242

Query: 195 YSCLMDLDAAIQ--IFREMECKDVISWTRMMGLFVDFEYAGD---ALKIFREMRKSRIIC 249
           Y+   D++++    +F EME KDV+SW  +M   +   Y GD   +L  FR M  S    
Sbjct: 243 YAKCGDVNSSDSECLFEEMEYKDVVSWNSIMRGCL---YNGDLEKSLCYFRRMNFSEERA 299

Query: 250 DTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ--SELRLSNSIIAMYSKCGDLDSSRS 307
           D V+L   IS  + LG+L  G+ +H Q +  G +  S + ++NS+I++YS+C  +D + +
Sbjct: 300 DHVSLSCAISACSSLGELAFGECIHGQGIKLGYKDNSFVSVANSLISLYSQCEAVDVAET 359

Query: 308 VFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELA 367
           VF ++  K +VSW A++ GY  N    EA +  ++M+       D +TL ++L    EL 
Sbjct: 360 VFREMAYKDIVSWNAMMEGYASNENIHEAFDLMVEMQTTGCFQPDIVTLTTMLPLCAELM 419

Query: 368 ALEICLQLHGIAFEAGF-PRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTI 426
                  +HG A      P +  ++N LI  YSKC  V+ A ++F     + D+VSWN +
Sbjct: 420 LYREGRTIHGYAIRRHMVPDHLPLRNGLIDMYSKCNVVEKAELLFHSTAQI-DLVSWNAM 478

Query: 427 IYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDG 474
           I GY  N + E A  L+ ++   G+   SST  +IL++C  A   N G
Sbjct: 479 ISGYSQNKYYEKAQNLFKELLCCGQNCSSSTVFAILSSCNSANSLNFG 526



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 136/496 (27%), Positives = 234/496 (47%), Gaps = 30/496 (6%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ L + Y K+G    +  LF+ I  ++V++W+ +I     N  +  +++ F  M+    
Sbjct: 135 STSLFTLYSKAGDFTSSRVLFEHIHNRDVIAWNAIISASLENKCYRTAVEFFQKMIKDQT 194

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
             +S T++ V+   + L+N    R IH + +K G+  D                      
Sbjct: 195 RFDSTTLLLVVSTLSHLKNFGQGRVIHCVSIKSGMLVDISLCNALINMYAKCGDVNSSDS 254

Query: 106 --LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
             LFE ++   +VS N+I+ G + N   ++++  F     S    + V++   I  C +L
Sbjct: 255 ECLFEEMEYKDVVSWNSIMRGCLYNGDLEKSLCYFRRMNFSEERADHVSLSCAISACSSL 314

Query: 164 GSRALCELIHGLTIKLGLILD--VSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
           G  A  E IHG  IKLG   +  VSV NS++ +YS    +D A  +FREM  KD++SW  
Sbjct: 315 GELAFGECIHGQGIKLGYKDNSFVSVANSLISLYSQCEAVDVAETVFREMAYKDIVSWNA 374

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRII-CDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
           MM  +   E   +A  +  EM+ +     D V L  ++ + A L   + G+ +H   +  
Sbjct: 375 MMEGYASNENIHEAFDLMVEMQTTGCFQPDIVTLTTMLPLCAELMLYREGRTIHGYAIRR 434

Query: 281 GL-QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            +    L L N +I MYSKC  ++ +  +F+   +  LVSW A+ISGY QN    +A N 
Sbjct: 435 HMVPDHLPLRNGLIDMYSKCNVVEKAELLFHSTAQIDLVSWNAMISGYSQNKYYEKAQNL 494

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           F ++     +   S T+ +IL++     +L     +H    ++GF  +  + N L+  Y 
Sbjct: 495 FKELLCCGQNCSSS-TVFAILSSCNSANSLNFGKSVHIWQLKSGFLNHTLLVNSLMQMYI 553

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTY 458
             G++   + + +E   + D+ SWNTII G       + AL  +  M +      DS T 
Sbjct: 554 NSGDLTSGFSILQENSSIADIASWNTIIVGCVRGDQFQEALETFMLMRQGPSFNYDSITL 613

Query: 459 LSILNACGHAGLTNDG 474
           +++L+A  +  L N G
Sbjct: 614 VNVLSAVANIELLNQG 629



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 134/489 (27%), Positives = 229/489 (46%), Gaps = 33/489 (6%)

Query: 11  LLSNYFKSGKIK--EAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           L++ Y K G +   ++E LF+E+  K+VVSW+ ++ G   NG  EKS+  F  M  S   
Sbjct: 239 LINMYAKCGDVNSSDSECLFEEMEYKDVVSWNSIMRGCLYNGDLEKSLCYFRRMNFSEER 298

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPY-------------- 114
            +  ++   + A + L  L     IHG  +K G + + F  + N                
Sbjct: 299 ADHVSLSCAISACSSLGELAFGECIHGQGIKLGYKDNSFVSVANSLISLYSQCEAVDVAE 358

Query: 115 ----------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSG-LVPNAVTMLTVIRGCVAL 163
                     +VS NA++ G+ +N+   +A  L    + +G   P+ VT+ T++  C  L
Sbjct: 359 TVFREMAYKDIVSWNAMMEGYASNENIHEAFDLMVEMQTTGCFQPDIVTLTTMLPLCAEL 418

Query: 164 GSRALCELIHGLTIKLGLILD-VSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
                   IHG  I+  ++ D + + N ++DMYS    ++ A  +F      D++SW  M
Sbjct: 419 MLYREGRTIHGYAIRRHMVPDHLPLRNGLIDMYSKCNVVEKAELLFHSTAQIDLVSWNAM 478

Query: 223 MGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL 282
           +  +   +Y   A  +F+E+      C +  +  ++S       L  GK +H   +  G 
Sbjct: 479 ISGYSQNKYYEKAQNLFKELLCCGQNCSSSTVFAILSSCNSANSLNFGKSVHIWQLKSGF 538

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITE-KSLVSWTAIISGYVQNGCAREALNQFI 341
            +   L NS++ MY   GDL S  S+  + +    + SW  II G V+    +EAL  F+
Sbjct: 539 LNHTLLVNSLMQMYINSGDLTSGFSILQENSSIADIASWNTIIVGCVRGDQFQEALETFM 598

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
            MRQ  + + DSITLV++L+A   +  L     LH +A ++ F     VQN LI+ Y +C
Sbjct: 599 LMRQGPSFNYDSITLVNVLSAVANIELLNQGKSLHSLALKSPFGSDTRVQNSLITMYDRC 658

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
            +++ A  VF +   + ++ +WN +I     N     AL L+  +      P+  T +S+
Sbjct: 659 RDINSARKVF-KFHSISNLCTWNCMISALSHNKESREALELFRHLQFK---PNEFTIVSV 714

Query: 462 LNACGHAGL 470
           L+AC   G+
Sbjct: 715 LSACTRIGV 723



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 106/367 (28%), Positives = 187/367 (50%), Gaps = 8/367 (2%)

Query: 171 LIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFE 230
           ++H   +K G +  +  + S+  +YS   D  ++  +F  +  +DVI+W  ++   ++ +
Sbjct: 118 VVHCAALKTGALAYLPTSTSLFTLYSKAGDFTSSRVLFEHIHNRDVIAWNAIISASLENK 177

Query: 231 YAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSN 290
               A++ F++M K +   D+  LL ++S  + L +  +G+ +H   +  G+  ++ L N
Sbjct: 178 CYRTAVEFFQKMIKDQTRFDSTTLLLVVSTLSHLKNFGQGRVIHCVSIKSGMLVDISLCN 237

Query: 291 SIIAMYSKCGDLDSSRS--VFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR--QE 346
           ++I MY+KCGD++SS S  +F ++  K +VSW +I+ G + NG   ++L  F +M   +E
Sbjct: 238 ALINMYAKCGDVNSSDSECLFEEMEYKDVVSWNSIMRGCLYNGDLEKSLCYFRRMNFSEE 297

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
           + D V     +S  ++ GELA  E C+   GI        + SV N LIS YS+C  VD+
Sbjct: 298 RADHVSLSCAISACSSLGELAFGE-CIHGQGIKLGYKDNSFVSVANSLISLYSQCEAVDV 356

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV-PDSSTYLSILNAC 465
           A  VF EM + +D+VSWN ++ GY  N +   A  L  +M  TG   PD  T  ++L  C
Sbjct: 357 AETVFREMAY-KDIVSWNAMMEGYASNENIHEAFDLMVEMQTTGCFQPDIVTLTTMLPLC 415

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI 525
               L  +G  I    I  + V         ++D+ ++   +  A  L     + +    
Sbjct: 416 AELMLYREGRTIHGYAIRRHMVPDHLPLRNGLIDMYSKCNVVEKAELLFHSTAQ-IDLVS 474

Query: 526 WRALLSG 532
           W A++SG
Sbjct: 475 WNAMISG 481


>gi|255542116|ref|XP_002512122.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549302|gb|EEF50791.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 800

 Score =  238 bits (608), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 158/556 (28%), Positives = 291/556 (52%), Gaps = 26/556 (4%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D    + LL  Y   G +  A+ +FD +  +++VSWS +I  Y  NG   + ++ F  +
Sbjct: 132 VDHVVETSLLGMYGDLGCLSNAKKVFDNMTTRDLVSWSSIISCYVDNGESSEGLEMFRLL 191

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
           +   +  +S TM+ +  A   L  L LA+S+HG +++  +E+                  
Sbjct: 192 VSQDVELDSVTMLSIAGACGELGFLRLAKSVHGCIIRQRIETRGPLNDALVLMYSRCDDF 251

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +F  + N  + S  A+++ +  ++ F+QA+ +F       + PNAVT++ V+  C
Sbjct: 252 SSAERIFSNMFNRSIASWTAMISCYNRSRWFKQALQVFVEMLEFKVAPNAVTIMAVLSSC 311

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
                    + +H   +K   + D S+  ++++ Y+    L    ++   +  +++ISW 
Sbjct: 312 AGFNLLREGKSVHCYAVKHIDLDDDSLGPALIEYYAQFGKLSYCEKVLHTIGKRNIISWN 371

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++ ++       +AL IF +M++   I D+ +L + IS  A +G L  G Q+H   +  
Sbjct: 372 MLISVYASQGLFKEALGIFVQMQRQGQIPDSFSLSSSISACANVGLLWLGHQIHGYAIKR 431

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
            +  E  + NS+I MYSKCG +D +  +F++I  KS+V+W ++I G+ Q G + EA+  F
Sbjct: 432 HILDEF-VQNSLIDMYSKCGHVDLAYLIFDRIQSKSVVAWNSMICGFSQIGNSLEAIRLF 490

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            +M     D ++ +T ++ + A   +  LE    LH      G  +   +   LI  Y+K
Sbjct: 491 DQMYLNCLD-MNEVTFLTAIQACSHMGHLEKGKWLHHKLIAYGVKKDLFIDTALIDMYAK 549

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CG++ +A+ VF+ M   R VVSW+ +I G G++G  + A++L+ +M +    P+  T+++
Sbjct: 550 CGDLRIAHRVFDSMS-ERSVVSWSAMIGGCGMHGDIDAAISLFAEMIQREMKPNDITFMN 608

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           IL+AC H+G   +G   FN M +  +V+P+ EH+ C+VDLL+RAG L +A  +   +   
Sbjct: 609 ILSACSHSGYVEEGKFYFNSM-KNFEVEPNLEHFACMVDLLSRAGDLDEAYRIINSMPFP 667

Query: 521 MGPNIWRALLSGCVLH 536
              +IW ALL+GC +H
Sbjct: 668 AEASIWGALLNGCRIH 683



 Score =  206 bits (523), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 146/558 (26%), Positives = 279/558 (50%), Gaps = 33/558 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           DP  S+KL+ +Y + G ++ ++ +F+     +   W+++I  +  + F  +++  ++ M+
Sbjct: 32  DPQASTKLIESYSQIGCLQSSKLVFETFQNPDSFMWAVLIKCHVWSNFCGEAISLYNKMI 91

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
              +  + F    VL A AG  NL++   +HG ++K+GL+ D                  
Sbjct: 92  YKQIPISDFIFSSVLRACAGFGNLDVGEEVHGRIIKYGLDVDHVVETSLLGMYGDLGCLS 151

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +F+ +    LVS ++I++ +++N    + + +F       +  ++VTML++   C 
Sbjct: 152 NAKKVFDNMTTRDLVSWSSIISCYVDNGESSEGLEMFRLLVSQDVELDSVTMLSIAGACG 211

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            LG   L + +HG  I+  +     +N++++ MYS   D  +A +IF  M  + + SWT 
Sbjct: 212 ELGFLRLAKSVHGCIIRQRIETRGPLNDALVLMYSRCDDFSSAERIFSNMFNRSIASWTA 271

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+  +    +   AL++F EM + ++  + V ++ ++S  A    L+ GK +H   V   
Sbjct: 272 MISCYNRSRWFKQALQVFVEMLEFKVAPNAVTIMAVLSSCAGFNLLREGKSVHCYAVKHI 331

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
              +  L  ++I  Y++ G L     V + I +++++SW  +IS Y   G  +EAL  F+
Sbjct: 332 DLDDDSLGPALIEYYAQFGKLSYCEKVLHTIGKRNIISWNMLISVYASQGLFKEALGIFV 391

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +M Q +    DS +L S ++A   +  L +  Q+HG A +        VQN LI  YSKC
Sbjct: 392 QM-QRQGQIPDSFSLSSSISACANVGLLWLGHQIHGYAIKRHILD-EFVQNSLIDMYSKC 449

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G+VDLAY++F+ +   + VV+WN++I G+   G+   A+ L+ +M       +  T+L+ 
Sbjct: 450 GHVDLAYLIFDRIQ-SKSVVAWNSMICGFSQIGNSLEAIRLFDQMYLNCLDMNEVTFLTA 508

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           + AC H G    G  + +++I    VK        ++D+ A+ G L     +A ++ + M
Sbjct: 509 IQACSHMGHLEKGKWLHHKLIAYG-VKKDLFIDTALIDMYAKCGDLR----IAHRVFDSM 563

Query: 522 GPN---IWRALLSGCVLH 536
                  W A++ GC +H
Sbjct: 564 SERSVVSWSAMIGGCGMH 581



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 85/321 (26%), Positives = 161/321 (50%), Gaps = 5/321 (1%)

Query: 154 LTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC 213
           + + R C +L  R L  L+H   +  GL  D   +  +++ YS +  L ++  +F   + 
Sbjct: 5   MPLFRSCTSL--RPL-TLLHSHLLVTGLHHDPQASTKLIESYSQIGCLQSSKLVFETFQN 61

Query: 214 KDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQL 273
            D   W  ++   V   + G+A+ ++ +M   +I        +++   A  G+L  G+++
Sbjct: 62  PDSFMWAVLIKCHVWSNFCGEAISLYNKMIYKQIPISDFIFSSVLRACAGFGNLDVGEEV 121

Query: 274 HAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA 333
           H +++  GL  +  +  S++ MY   G L +++ VF+ +T + LVSW++IIS YV NG +
Sbjct: 122 HGRIIKYGLDVDHVVETSLLGMYGDLGCLSNAKKVFDNMTTRDLVSWSSIISCYVDNGES 181

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC 393
            E L  F  +  +  + +DS+T++SI  A GEL  L +   +HG            + + 
Sbjct: 182 SEGLEMFRLLVSQDVE-LDSVTMLSIAGACGELGFLRLAKSVHGCIIRQRIETRGPLNDA 240

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           L+  YS+C +   A  +F  M F R + SW  +I  Y  +   + AL ++ +M E    P
Sbjct: 241 LVLMYSRCDDFSSAERIFSNM-FNRSIASWTAMISCYNRSRWFKQALQVFVEMLEFKVAP 299

Query: 454 DSSTYLSILNACGHAGLTNDG 474
           ++ T +++L++C    L  +G
Sbjct: 300 NAVTIMAVLSSCAGFNLLREG 320


>gi|297737195|emb|CBI26396.3| unnamed protein product [Vitis vinifera]
          Length = 667

 Score =  238 bits (608), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 167/557 (29%), Positives = 269/557 (48%), Gaps = 68/557 (12%)

Query: 65  SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY-------- 114
           SG+  + FT   VL A A L +LE A  +H  ++  G ++ +F    L + Y        
Sbjct: 22  SGVHGSEFTFPFVLKACAKLPSLEDATKLHSHILLTGFQAHVFVQTALVDVYSKCCCFHS 81

Query: 115 ------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA 162
                       LVS N+I++    +    Q+  +    +  GL  ++ T    +  C  
Sbjct: 82  ARLVFDQMPIKSLVSWNSIISAHCRDFHIDQSFGILKQMQLLGLELSSATFTGFLASCSL 141

Query: 163 LGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
               +    IHG   KLGL L + + NS++ MY  L  +D A+ +F  +  K ++SWT +
Sbjct: 142 PQGLS----IHGYITKLGLDLHLPLANSIMSMYIRLNQIDGALSVFYTLHQKSIVSWTII 197

Query: 223 MGLFVDFEYAGDALKIFREMRKSRIIC---DTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           +G ++    AGD  K+F    + R  C   D++  +NLIS   + G+L     +H+ ++ 
Sbjct: 198 LGGYLS---AGDVAKVFAVFNQMRCQCVGPDSIVFVNLISCCKLSGNLLLAMLVHSLLLK 254

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G   +  + N ++AMY+KC DL S+R VF+ + EKS+  WT++ISGY Q G   EAL+ 
Sbjct: 255 SGFDHKDPIDNLLVAMYAKCKDLVSARRVFDAVHEKSVFLWTSMISGYAQFGYPNEALHL 314

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           F  M        + +TL ++L+A  E+ +L +  ++       G      VQ  LI  + 
Sbjct: 315 F-NMLLRTASRPNELTLATVLSACAEMGSLRMGEEIEQYILLNGLGSDLRVQTSLIHMFC 373

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM-TETGEVPDSSTY 458
           KCG++  A  +FE +   +D+  W+ +I GY V+G G+ AL L+HKM  E G  PD+  Y
Sbjct: 374 KCGSIKKAQALFERIPN-KDLAVWSAMINGYAVHGMGKEALNLFHKMQNEVGIKPDAIVY 432

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
            S+L AC H+GL  DGL  F  M ++  ++PS +HY C+VDLL RAG +  A     ++ 
Sbjct: 433 TSVLLACSHSGLIEDGLKYFRSMQKDFGIEPSIQHYSCLVDLLGRAGYVELALRTIQEMP 492

Query: 519 EGMGPNIWRALLSGCVLH---------------------------------VGRFQDAEA 545
             +   +W   LS C  H                                 +G++++A  
Sbjct: 493 VLVQARVWAPFLSACYTHHNLELGEFAAKNLFDLEPRSTGNFVLMTNLYTSMGKWKEAAK 552

Query: 546 LRSGSQKKGIIKIPGIS 562
            RS    +G++K PG S
Sbjct: 553 ARSIINARGLVKEPGWS 569



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 124/452 (27%), Positives = 211/452 (46%), Gaps = 49/452 (10%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           +  + L+  Y K      A  +FD++P K++VSW+ +I  +  +   ++S      M L 
Sbjct: 64  FVQTALVDVYSKCCCFHSARLVFDQMPIKSLVSWNSIISAHCRDFHIDQSFGILKQMQLL 123

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL------------------- 106
           GL  +S T  G L + +  Q L    SIHG + K GL+  L                   
Sbjct: 124 GLELSSATFTGFLASCSLPQGL----SIHGYITKLGLDLHLPLANSIMSMYIRLNQIDGA 179

Query: 107 ---FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
              F  L    +VS   I+ G+++     +   +FN  R   + P+++  + +I  C   
Sbjct: 180 LSVFYTLHQKSIVSWTIILGGYLSAGDVAKVFAVFNQMRCQCVGPDSIVFVNLISCCKLS 239

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
           G+  L  L+H L +K G      ++N ++ MY+   DL +A ++F  +  K V  WT M+
Sbjct: 240 GNLLLAMLVHSLLLKSGFDHKDPIDNLLVAMYAKCKDLVSARRVFDAVHEKSVFLWTSMI 299

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
             +  F Y  +AL +F  + ++    + + L  ++S  A +G L+ G+++   ++L GL 
Sbjct: 300 SGYAQFGYPNEALHLFNMLLRTASRPNELTLATVLSACAEMGSLRMGEEIEQYILLNGLG 359

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
           S+LR+  S+I M+ KCG +  ++++F +I  K L  W+A+I+GY  +G  +EALN F KM
Sbjct: 360 SDLRVQTSLIHMFCKCGSIKKAQALFERIPNKDLAVWSAMINGYAVHGMGKEALNLFHKM 419

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ------------ 391
           + E     D+I   S+L A             H    E G   +RS+Q            
Sbjct: 420 QNEVGIKPDAIVYTSVLLACS-----------HSGLIEDGLKYFRSMQKDFGIEPSIQHY 468

Query: 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSW 423
           +CL+    + G V+LA    +EM  L     W
Sbjct: 469 SCLVDLLGRAGYVELALRTIQEMPVLVQARVW 500


>gi|218526158|sp|Q9M1V3.2|PP296_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g63370
          Length = 960

 Score =  238 bits (608), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 167/616 (27%), Positives = 300/616 (48%), Gaps = 70/616 (11%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEK-NVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLP 69
           L+S Y K+  +  A  LFD   EK + V W+ ++  YS +G   ++++ F  M ++G  P
Sbjct: 223 LVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAP 282

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-----------------------L 106
           NS+T+V  L A  G    +L + IH  ++K    S                        +
Sbjct: 283 NSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERI 342

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
              + N  +V+ N+++ G++ N ++++A+  F+    +G   + V+M ++I     L + 
Sbjct: 343 LRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNL 402

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYS-----CLMDLDAAIQIFREMECKDVISWTR 221
                +H   IK G   ++ V N+++DMYS     C M      + F  M  KD+ISWT 
Sbjct: 403 LAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMG-----RAFLRMHDKDLISWTT 457

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++  +   +   +AL++FR++ K R+  D + L +++  +++L  +   K++H  ++  G
Sbjct: 458 VIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKG 517

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           L   + + N ++ +Y KC ++  +  VF  I  K +VSWT++IS    NG   EA+  F 
Sbjct: 518 LLDTV-IQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFR 576

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +M  E   S DS+ L+ IL+A+  L+AL    ++H      GF    S+   ++  Y+ C
Sbjct: 577 RM-VETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACC 635

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G++  A  VF+ +   + ++ + ++I  YG++G G+ A+ L+ KM      PD  ++L++
Sbjct: 636 GDLQSAKAVFDRIE-RKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLAL 694

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L AC HAGL ++G      M  E +++P  EHY C+VD+L RA C+ +A      +    
Sbjct: 695 LYACSHAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEP 754

Query: 522 GPNIWRALLSGCVLHV---------------------------------GRFQDAEALRS 548
              +W ALL+ C  H                                  GR+ D E +R+
Sbjct: 755 TAEVWCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRA 814

Query: 549 GSQKKGIIKIPGISFL 564
             +  G+ K PG S++
Sbjct: 815 KMKASGMEKHPGCSWI 830



 Score =  197 bits (502), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 142/494 (28%), Positives = 244/494 (49%), Gaps = 27/494 (5%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           + KL+  Y K G + +AE +FDE+P++   +W+ +I  Y  NG    ++  + +M + G+
Sbjct: 119 AGKLVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGV 178

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
                +   +L A A L+++     +H L+VK G  S                       
Sbjct: 179 PLGLSSFPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARR 238

Query: 106 LFEGLKNP-YLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
           LF+G +     V  N+I++ +  +    + + LF     +G  PN+ T+++ +  C    
Sbjct: 239 LFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFS 298

Query: 165 SRALCELIHGLTIKLGL-ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
              L + IH   +K      ++ V N+++ MY+    +  A +I R+M   DV++W  ++
Sbjct: 299 YAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLI 358

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
             +V      +AL+ F +M  +    D V++ ++I+ +  L +L  G +LHA V+  G  
Sbjct: 359 KGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWD 418

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
           S L++ N++I MYSKC         F ++ +K L+SWT +I+GY QN C  EAL  F  +
Sbjct: 419 SNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDV 478

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
            +++ + +D + L SIL AS  L ++ I  ++H      G      +QN L+  Y KC N
Sbjct: 479 AKKRME-IDEMILGSILRASSVLKSMLIVKEIHCHILRKGLLD-TVIQNELVDVYGKCRN 536

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           +  A  VFE +   +DVVSW ++I    +NG+   A+ L+ +M ETG   DS   L IL+
Sbjct: 537 MGYATRVFESIKG-KDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCILS 595

Query: 464 ACGHAGLTNDGLVI 477
           A       N G  I
Sbjct: 596 AAASLSALNKGREI 609



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 104/387 (26%), Positives = 206/387 (53%), Gaps = 24/387 (6%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y  + L++ Y + GK+ +AE +  ++   +VV+W+ +I GY  N  ++++++ FS M+ +
Sbjct: 321 YVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAA 380

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL------------------- 106
           G   +  +M  ++ A+  L NL     +H  ++K G +S+L                   
Sbjct: 381 GHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYM 440

Query: 107 ---FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
              F  + +  L+S   ++AG+  N    +A+ LF       +  + + + +++R    L
Sbjct: 441 GRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVL 500

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
            S  + + IH   ++ GL LD  + N ++D+Y    ++  A ++F  ++ KDV+SWT M+
Sbjct: 501 KSMLIVKEIHCHILRKGL-LDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMI 559

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
                     +A+++FR M ++ +  D+VALL ++S  A L  L +G+++H  ++  G  
Sbjct: 560 SSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFC 619

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
            E  ++ +++ MY+ CGDL S+++VF++I  K L+ +T++I+ Y  +GC + A+  F KM
Sbjct: 620 LEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKM 679

Query: 344 RQEKTDSVDSITLVSILTASGELAALE 370
           R E   S D I+ +++L A      L+
Sbjct: 680 RHENV-SPDHISFLALLYACSHAGLLD 705



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 128/271 (47%), Gaps = 7/271 (2%)

Query: 267 LKRGKQLHAQVVLGGLQSELR-LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIIS 325
           + +G+QLH+++       EL  L+  ++ MY KCG LD +  VF+++ +++  +W  +I 
Sbjct: 96  VSQGRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIG 155

Query: 326 GYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFP 385
            YV NG    AL  +  MR E    +   +  ++L A  +L  +    +LH +  + G+ 
Sbjct: 156 AYVSNGEPASALALYWNMRVEGV-PLGLSSFPALLKACAKLRDIRSGSELHSLLVKLGYH 214

Query: 386 RYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHK 445
               + N L+S Y+K  ++  A  +F+      D V WN+I+  Y  +G     L L+ +
Sbjct: 215 STGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFRE 274

Query: 446 MTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGC--VVDLLAR 503
           M  TG  P+S T +S L AC        G  I   +++ +    S E Y C  ++ +  R
Sbjct: 275 MHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSS--THSSELYVCNALIAMYTR 332

Query: 504 AGCLSDASGLAGKLLEGMGPNIWRALLSGCV 534
            G +  A  +  + +       W +L+ G V
Sbjct: 333 CGKMPQAERIL-RQMNNADVVTWNSLIKGYV 362



 Score = 47.4 bits (111), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 86/184 (46%), Gaps = 22/184 (11%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D    ++L+  Y K   +  A  +F+ I  K+VVSW+ +I   ++NG   ++++ F  M
Sbjct: 519 LDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRM 578

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK--FGLESDL-------------- 106
           + +GL  +S  ++ +L AAA L  L   R IH  +++  F LE  +              
Sbjct: 579 VETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDL 638

Query: 107 ------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                 F+ ++   L+   +++  +  +   + AV LF+  R   + P+ ++ L ++  C
Sbjct: 639 QSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYAC 698

Query: 161 VALG 164
              G
Sbjct: 699 SHAG 702


>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
 gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
          Length = 653

 Score =  238 bits (608), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 144/446 (32%), Positives = 237/446 (53%), Gaps = 4/446 (0%)

Query: 93  IHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVT 152
           ++G   + G+  D+F+ +    +VS  A++ G I N    +++LLF+    SG+ PN  T
Sbjct: 16  MYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLFSKMGLSGVKPNDFT 75

Query: 153 MLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME 212
             T ++ C  L    +   IH + +K G  +   V NS++DMYS    ++ A  +F  M 
Sbjct: 76  FSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRINEAACMFEVMP 135

Query: 213 CKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQ 272
            +++ISW  M+  +    +   AL +F++M++     D     + +   + LG +K G Q
Sbjct: 136 VRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKACSDLGAIKEGNQ 195

Query: 273 LHAQVVLGGLQSELR--LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
           +HA ++ GG    +   ++ ++I +Y KCG L  +R VF+ I EK ++SWTA+I GY Q 
Sbjct: 196 IHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEKHVISWTALILGYAQE 255

Query: 331 GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV 390
           G   E++  F ++R E +  VD   L S++    + A ++   Q+H  A +       SV
Sbjct: 256 GNLAESMELFRQLR-ESSIQVDGFILSSMMGVFADFALVQQGKQMHAFAIKVPSGVDISV 314

Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
            N ++  Y KCG ++ A  +F EM   R+V+SW  +I GYG +G G+ A+ L+ +M    
Sbjct: 315 CNSILDMYLKCGMINEAERLFSEMP-ARNVISWTVMITGYGKHGLGKEAIRLFDEMQLDS 373

Query: 451 EVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
             PD  TYL++L  C H+GL   G   F+++   + +K   EHY C+VDLL RAG L +A
Sbjct: 374 TEPDDVTYLAVLLGCSHSGLVEKGQEYFSRLCSYHGIKARVEHYACMVDLLGRAGRLKEA 433

Query: 511 SGLAGKLLEGMGPNIWRALLSGCVLH 536
             L   +       IW+ LLS C +H
Sbjct: 434 KNLVDSMPLEANVGIWQTLLSACRVH 459



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 125/459 (27%), Positives = 232/459 (50%), Gaps = 40/459 (8%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ L+  Y K G++  A ++FD + ++NVVSW+ ++ G+  NG   +S+  FS M LSG+
Sbjct: 10  SNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLFSKMGLSGV 69

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE----------------------SD 105
            PN FT    L A   L  L++ R IH + VK G +                      + 
Sbjct: 70  KPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRINEAAC 129

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +FE +    L+S NA++AG+      ++A++LF   +  G   +  T  + ++ C  LG+
Sbjct: 130 MFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKACSDLGA 189

Query: 166 RALCELIHGLTIKLGLILDV--SVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
                 IH   I  G +  V  +V  +++D+Y     L  A ++F  +E K VISWT ++
Sbjct: 190 IKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEKHVISWTALI 249

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
             +       +++++FR++R+S I  D   L +++ V A    +++GKQ+HA  +     
Sbjct: 250 LGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQGKQMHAFAIKVPSG 309

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
            ++ + NSI+ MY KCG ++ +  +F+++  ++++SWT +I+GY ++G  +EA+  F +M
Sbjct: 310 VDISVCNSILDMYLKCGMINEAERLFSEMPARNVISWTVMITGYGKHGLGKEAIRLFDEM 369

Query: 344 RQEKTDSVDSITLVSILTASGELAALE--------ICLQLHGIAFEAGFPRYRSVQNCLI 395
           + + T+  D +T +++L        +E        +C   HGI  +A    Y     C++
Sbjct: 370 QLDSTEP-DDVTYLAVLLGCSHSGLVEKGQEYFSRLC-SYHGI--KARVEHY----ACMV 421

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNG 434
               + G +  A  + + M    +V  W T++    V+G
Sbjct: 422 DLLGRAGRLKEAKNLVDSMPLEANVGIWQTLLSACRVHG 460



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/194 (40%), Positives = 109/194 (56%), Gaps = 2/194 (1%)

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           G   +L LSN +I MY KCG L  +  VF+++ ++++VSWTA++ G++QNG   E+L  F
Sbjct: 2   GFGFDLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLF 61

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            KM        D  T  + L A G L  L+I  Q+H I  + GF     V N +I  YSK
Sbjct: 62  SKMGLSGVKPND-FTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSK 120

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CG ++ A  +FE M  +R+++SWN +I GY V G  E AL L+ KM E G   D  T+ S
Sbjct: 121 CGRINEAACMFEVMP-VRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTS 179

Query: 461 ILNACGHAGLTNDG 474
            L AC   G   +G
Sbjct: 180 TLKACSDLGAIKEG 193



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 140/298 (46%), Gaps = 4/298 (1%)

Query: 179 LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKI 238
           +G   D+ ++N ++ MY     L  A  +F  M  ++V+SWT +M   +      ++L +
Sbjct: 1   MGFGFDLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLL 60

Query: 239 FREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSK 298
           F +M  S +  +       +    +L  L  G+Q+H   V  G      + NSII MYSK
Sbjct: 61  FSKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSK 120

Query: 299 CGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVS 358
           CG ++ +  +F  +  ++L+SW A+I+GY   G   +AL  F KM QE    +D  T  S
Sbjct: 121 CGRINEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKM-QEVGGFLDEFTFTS 179

Query: 359 ILTASGELAALEICLQLHGIAFEAGF--PRYRSVQNCLISSYSKCGNVDLAYIVFEEMGF 416
            L A  +L A++   Q+H      GF      +V   LI  Y KCG + +A  VF  +  
Sbjct: 180 TLKACSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIE- 238

Query: 417 LRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDG 474
            + V+SW  +I GY   G+   ++ L+ ++ E+    D     S++       L   G
Sbjct: 239 EKHVISWTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQG 296


>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g08820
 gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
 gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
 gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 685

 Score =  238 bits (608), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 159/516 (30%), Positives = 258/516 (50%), Gaps = 41/516 (7%)

Query: 84  LQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRG 143
           L NL L R++     K+     LF   + P +   N+++ GF+NN LF + + LF   R 
Sbjct: 47  LVNLLLKRTLFFRQTKYSYL--LFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRK 104

Query: 144 SGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDA 203
            GL  +  T   V++ C    SR L   +H L +K G   DV+   S+L +YS    L+ 
Sbjct: 105 HGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLND 164

Query: 204 AIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAI 263
           A ++F E+  + V++WT +   +       +A+ +F++M +  +  D+  ++ ++S    
Sbjct: 165 AHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVH 224

Query: 264 LGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAI 323
           +GDL  G+ +   +    +Q    +  +++ +Y+KCG ++ +RSVF+ + EK +V+W+ +
Sbjct: 225 VGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTM 284

Query: 324 ISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG 383
           I GY  N   +E +  F++M QE     D  ++V  L++   L AL++      +     
Sbjct: 285 IQGYASNSFPKEGIELFLQMLQENLKP-DQFSIVGFLSSCASLGALDLGEWGISLIDRHE 343

Query: 384 FPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALY 443
           F     + N LI  Y+KCG +   + VF+EM   +D+V  N  I G   NGH + + A++
Sbjct: 344 FLTNLFMANALIDMYAKCGAMARGFEVFKEMK-EKDIVIMNAAISGLAKNGHVKLSFAVF 402

Query: 444 HKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLAR 503
            +  + G  PD ST+L +L  C HAGL  DGL  FN +     +K + EHYGC+VDL  R
Sbjct: 403 GQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGR 462

Query: 504 AGCLSDASGLAGKLLEGMGPN--IWRALLSGCVL------------------------HV 537
           AG L DA  L   +   M PN  +W ALLSGC L                        +V
Sbjct: 463 AGMLDDAYRLICDM--PMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYV 520

Query: 538 ---------GRFQDAEALRSGSQKKGIIKIPGISFL 564
                    GR+ +A  +R    KKG+ KIPG S++
Sbjct: 521 QLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWI 556



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 91/427 (21%), Positives = 194/427 (45%), Gaps = 26/427 (6%)

Query: 27  LFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQN 86
           LF      N+  ++ +I+G+  N    +++  F  +   GL  + FT   VL A     +
Sbjct: 67  LFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASS 126

Query: 87  LELARSIHGLMVKFGLESD----------------------LFEGLKNPYLVSCNAIVAG 124
            +L   +H L+VK G   D                      LF+ + +  +V+  A+ +G
Sbjct: 127 RKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSG 186

Query: 125 FINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILD 184
           +  +   ++A+ LF      G+ P++  ++ V+  CV +G     E I     ++ +  +
Sbjct: 187 YTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKN 246

Query: 185 VSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRK 244
             V  +++++Y+    ++ A  +F  M  KD+++W+ M+  +    +  + +++F +M +
Sbjct: 247 SFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQ 306

Query: 245 SRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDS 304
             +  D  +++  +S  A LG L  G+   + +      + L ++N++I MY+KCG +  
Sbjct: 307 ENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMAR 366

Query: 305 SRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASG 364
              VF ++ EK +V   A ISG  +NG  + +   F +  +    S D  T + +L    
Sbjct: 367 GFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGI-SPDGSTFLGLLCGCV 425

Query: 365 ELAALEICLQLHGIAFEAGFPRYRSVQN--CLISSYSKCGNVDLAYIVFEEMGFLRDVVS 422
               ++  L+    A    +   R+V++  C++  + + G +D AY +  +M    + + 
Sbjct: 426 HAGLIQDGLRFFN-AISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIV 484

Query: 423 WNTIIYG 429
           W  ++ G
Sbjct: 485 WGALLSG 491



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 73/342 (21%), Positives = 161/342 (47%), Gaps = 24/342 (7%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + LLS Y  SG++ +A  LFDEIP+++VV+W+ +  GY+ +G H +++  F  M+  G+ 
Sbjct: 150 TSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVK 209

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------L 106
           P+S+ +V VL A   + +L+    I   M +  ++ +                      +
Sbjct: 210 PDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSV 269

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           F+ +    +V+ + ++ G+ +N   ++ + LF       L P+  +++  +  C +LG+ 
Sbjct: 270 FDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGAL 329

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
            L E    L  +   + ++ + N+++DMY+    +    ++F+EM+ KD++     +   
Sbjct: 330 DLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGL 389

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG-KQLHAQVVLGGLQSE 285
               +   +  +F +  K  I  D    L L+      G ++ G +  +A   +  L+  
Sbjct: 390 AKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRT 449

Query: 286 LRLSNSIIAMYSKCGDLDSS-RSVFNQITEKSLVSWTAIISG 326
           +     ++ ++ + G LD + R + +     + + W A++SG
Sbjct: 450 VEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSG 491


>gi|242094978|ref|XP_002437979.1| hypothetical protein SORBIDRAFT_10g005810 [Sorghum bicolor]
 gi|241916202|gb|EER89346.1| hypothetical protein SORBIDRAFT_10g005810 [Sorghum bicolor]
          Length = 657

 Score =  238 bits (608), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 147/486 (30%), Positives = 252/486 (51%), Gaps = 32/486 (6%)

Query: 90  ARSIHGLMVKFGLESD----------------------LFEGLKNPYLVSCNAIVAGFIN 127
           AR++HGL V  G  +D                      +F+ + +P  +  N ++AG   
Sbjct: 133 ARTLHGLSVAAGYAADTFVASALAKLYFKLSKVDDARKVFDAVPSPDTILWNTLLAGLPG 192

Query: 128 NKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSV 187
           +   +  V +    R   + P++ T+ + +R        A+   +HG  +K GL     V
Sbjct: 193 SVALEAFVRMVEVGR---VRPDSTTLASSLRAAAEASHVAMGRCVHGYGVKCGLAEHEHV 249

Query: 188 NNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRI 247
              ++ +YS   D+D A  +F  ME  D++++  ++  +        ++++F+E+  S  
Sbjct: 250 VTGLMSLYSKCGDMDCARSLFDRMEDPDLVAYNALISGYSVNGMVESSVELFKELAASDW 309

Query: 248 ICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRS 307
             ++  L+ +I V +  G     + LHA VV   L ++  +S ++  +Y +  D++S+RS
Sbjct: 310 RPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARS 369

Query: 308 VFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELA 367
           +F+ + EK++ SW A+ISGY QNG    A+  F ++ QE     +  T+ S L+A  +L 
Sbjct: 370 IFDAMPEKTMESWNAMISGYAQNGLTEMAVELF-QLMQELNVQPNPTTISSTLSACAQLG 428

Query: 368 ALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
           AL +   +H I  +        V   LI  Y+KCG++  A  +F+ M   ++VVSWN +I
Sbjct: 429 ALSLGTWVHRIIAKENLELNVYVMTALIDMYAKCGSIAEARSIFDRMDN-KNVVSWNAMI 487

Query: 428 YGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKV 487
            GYG++G G  AL LY  M +   +P SST+LS+L AC H GL ++G  +F  M  E ++
Sbjct: 488 SGYGLHGRGAEALKLYKSMLDACILPTSSTFLSVLYACSHGGLVDEGQKVFRVMTNEYRI 547

Query: 488 KPSQEHYGCVVDLLARAGCLSDASGLAGKLLE-GMGPNIWRALLSGCVLHVGRFQDAEAL 546
            P  EH  C+VDLL RAG L++A  L  +  +  +GP +W ALLS C++H    ++++  
Sbjct: 548 SPGIEHCTCMVDLLGRAGKLNEALDLISEFPQSAIGPGVWGALLSACMVH----KNSDLA 603

Query: 547 RSGSQK 552
           +  SQK
Sbjct: 604 KLASQK 609



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 102/363 (28%), Positives = 182/363 (50%), Gaps = 27/363 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + +S L   YFK  K+ +A  +FD +P  + + W+ ++ G  + G    +++AF  M+
Sbjct: 148 DTFVASALAKLYFKLSKVDDARKVFDAVPSPDTILWNTLLAG--LPG--SVALEAFVRMV 203

Query: 64  LSGLL-PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES------------------ 104
             G + P+S T+   L AAA   ++ + R +HG  VK GL                    
Sbjct: 204 EVGRVRPDSTTLASSLRAAAEASHVAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKCGDM 263

Query: 105 ----DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                LF+ +++P LV+ NA+++G+  N + + +V LF     S   PN+ T++ VI   
Sbjct: 264 DCARSLFDRMEDPDLVAYNALISGYSVNGMVESSVELFKELAASDWRPNSSTLVAVIPVY 323

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
              G   L   +H   +K  L  D  V+ ++  +Y  L D+++A  IF  M  K + SW 
Sbjct: 324 SPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARSIFDAMPEKTMESWN 383

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+  +        A+++F+ M++  +  +   + + +S  A LG L  G  +H  +   
Sbjct: 384 AMISGYAQNGLTEMAVELFQLMQELNVQPNPTTISSTLSACAQLGALSLGTWVHRIIAKE 443

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
            L+  + +  ++I MY+KCG +  +RS+F+++  K++VSW A+ISGY  +G   EAL  +
Sbjct: 444 NLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISGYGLHGRGAEALKLY 503

Query: 341 IKM 343
             M
Sbjct: 504 KSM 506



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 133/272 (48%), Gaps = 17/272 (6%)

Query: 266 DLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIIS 325
           D    + LH   V  G  ++  +++++  +Y K   +D +R VF+ +     + W  +++
Sbjct: 129 DAAAARTLHGLSVAAGYAADTFVASALAKLYFKLSKVDDARKVFDAVPSPDTILWNTLLA 188

Query: 326 GYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFP 385
           G   +     AL  F++M +      DS TL S L A+ E + + +   +HG   + G  
Sbjct: 189 GLPGS----VALEAFVRMVEVGRVRPDSTTLASSLRAAAEASHVAMGRCVHGYGVKCGLA 244

Query: 386 RYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHK 445
            +  V   L+S YSKCG++D A  +F+ M    D+V++N +I GY VNG  E+++ L+ +
Sbjct: 245 EHEHVVTGLMSLYSKCGDMDCARSLFDRMED-PDLVAYNALISGYSVNGMVESSVELFKE 303

Query: 446 MTETGEVPDSSTYLSIL---NACGHAGLTN--DGLVIFNQMIEENKVKPSQEHYGCVVDL 500
           +  +   P+SST ++++   +  GH  L       V+  ++  +  V  +     C ++ 
Sbjct: 304 LAASDWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLND 363

Query: 501 LARAGCLSDASGLAGKLLEGMGPNIWRALLSG 532
           +  A  + DA  +  K +E      W A++SG
Sbjct: 364 MESARSIFDA--MPEKTMES-----WNAMISG 388



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 18/148 (12%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y  + L+  Y K G I EA ++FD +  KNVVSW+ +I GY ++G   +++K +  M+ +
Sbjct: 450 YVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISGYGLHGRGAEALKLYKSMLDA 509

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVS-----CNA 120
            +LP S T + VL A +           HG +V  G    +F  + N Y +S     C  
Sbjct: 510 CILPTSSTFLSVLYACS-----------HGGLVDEG--QKVFRVMTNEYRISPGIEHCTC 556

Query: 121 IVAGFINNKLFQQAVLLFNFFRGSGLVP 148
           +V          +A+ L + F  S + P
Sbjct: 557 MVDLLGRAGKLNEALDLISEFPQSAIGP 584


>gi|6729034|gb|AAF27030.1|AC009177_20 hypothetical protein [Arabidopsis thaliana]
          Length = 548

 Score =  238 bits (607), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 135/452 (29%), Positives = 240/452 (53%), Gaps = 25/452 (5%)

Query: 86  NLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSG 145
           NL  ARS+             FE +  P +   N+++ G+ N+    +A++ +      G
Sbjct: 56  NLSYARSV-------------FESIDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKG 102

Query: 146 LVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAI 205
             P+  T   V++ C  L        +HG  +K G  +++ V+  +L MY C  +++  +
Sbjct: 103 YSPDYFTFPYVLKACSGLRDIQFGSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGL 162

Query: 206 QIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILG 265
           ++F ++   +V++W  ++  FV+     DA++ FREM+ + +  +   +++L+       
Sbjct: 163 RVFEDIPQWNVVAWGSLISGFVNNNRFSDAIEAFREMQSNGVKANETIMVDLLVACGRCF 222

Query: 266 DLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIIS 325
           D     ++   V+L         + S+I MY+KCGDL ++R +F+ + E++LVSW +II+
Sbjct: 223 DPYFQSKVGFNVIL---------ATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIIT 273

Query: 326 GYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFP 385
           GY QNG A EAL  F+ M      + D +T +S++ AS      ++   +H    + GF 
Sbjct: 274 GYSQNGDAEEALCMFLDMLDLGI-APDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFV 332

Query: 386 RYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHK 445
           +  ++   L++ Y+K G+ + A   FE++   +D ++W  +I G   +GHG  AL+++ +
Sbjct: 333 KDAAIVCALVNMYAKTGDAESAKKAFEDLE-KKDTIAWTVVIIGLASHGHGNEALSIFQR 391

Query: 446 MTETGE-VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARA 504
           M E G   PD  TYL +L AC H GL  +G   F +M + + ++P+ EHYGC+VD+L+RA
Sbjct: 392 MQEKGNATPDGITYLGVLYACSHIGLVEEGQRYFAEMRDLHGLEPTVEHYGCMVDILSRA 451

Query: 505 GCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
           G   +A  L   +      NIW ALL+GC +H
Sbjct: 452 GRFEEAERLVKTMPVKPNVNIWGALLNGCDIH 483



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 120/487 (24%), Positives = 224/487 (45%), Gaps = 45/487 (9%)

Query: 24  AENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAG 83
           A ++F+ I   +V  W+ +I GYS +   +K++  +  M+  G  P+ FT   VL A +G
Sbjct: 60  ARSVFESIDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSG 119

Query: 84  LQNLELARSIHGLMVKFGLESDL----------------------FEGLKNPYLVSCNAI 121
           L++++    +HG +VK G E ++                      FE +    +V+  ++
Sbjct: 120 LRDIQFGSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSL 179

Query: 122 VAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGL 181
           ++GF+NN  F  A+  F   + +G+  N   M+ ++  C     R           K+G 
Sbjct: 180 ISGFVNNNRFSDAIEAFREMQSNGVKANETIMVDLLVAC----GRCFDPYFQS---KVGF 232

Query: 182 ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFRE 241
             +V +  S++DMY+   DL  A  +F  M  + ++SW  ++  +     A +AL +F +
Sbjct: 233 --NVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMFLD 290

Query: 242 MRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGD 301
           M    I  D V  L++I  + I G  + G+ +HA V   G   +  +  +++ MY+K GD
Sbjct: 291 MLDLGIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCALVNMYAKTGD 350

Query: 302 LDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILT 361
            +S++  F  + +K  ++WT +I G   +G   EAL+ F +M+++   + D IT + +L 
Sbjct: 351 AESAKKAFEDLEKKDTIAWTVVIIGLASHGHGNEALSIFQRMQEKGNATPDGITYLGVLY 410

Query: 362 ASGELAALEICLQ-------LHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM 414
           A   +  +E   +       LHG+  E     Y     C++   S+ G  + A  + + M
Sbjct: 411 ACSHIGLVEEGQRYFAEMRDLHGL--EPTVEHY----GCMVDILSRAGRFEEAERLVKTM 464

Query: 415 GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDG 474
               +V  W  ++ G  ++ + E    +   + E  E+  S  Y+ + N    AG   D 
Sbjct: 465 PVKPNVNIWGALLNGCDIHENLELTDRIRSMVAEPEEL-GSGIYVLLSNIYAKAGRWADV 523

Query: 475 LVIFNQM 481
            +I   M
Sbjct: 524 KLIRESM 530



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 110/404 (27%), Positives = 196/404 (48%), Gaps = 19/404 (4%)

Query: 166 RALCEL--IHGLTIKLGLILDVSVNNSVLDMYSC---LMDLDAAIQIFREMECKDVISWT 220
           R+L EL  +HGL IK  +I +V   + ++D  +     M+L  A  +F  ++C  V  W 
Sbjct: 17  RSLVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDCPSVYIWN 76

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+  + +      AL  ++EM +     D      ++   + L D++ G  +H  VV  
Sbjct: 77  SMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSCVHGFVVKT 136

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           G +  + +S  ++ MY  CG+++    VF  I + ++V+W ++ISG+V N    +A+  F
Sbjct: 137 GFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNNRFSDAIEAF 196

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            +M+     + ++I +V +L A G       C   +   F++       +   LI  Y+K
Sbjct: 197 REMQSNGVKANETI-MVDLLVACGR------CFDPY---FQSKVGFNVILATSLIDMYAK 246

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CG++  A  +F+ M   R +VSWN+II GY  NG  E AL ++  M + G  PD  T+LS
Sbjct: 247 CGDLRTARYLFDGMP-ERTLVSWNSIITGYSQNGDAEEALCMFLDMLDLGIAPDKVTFLS 305

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           ++ A    G +  G  I   + +   VK +      +V++ A+ G  ++++  A + LE 
Sbjct: 306 VIRASMIQGCSQLGQSIHAYVSKTGFVKDAA-IVCALVNMYAKTG-DAESAKKAFEDLEK 363

Query: 521 MGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFL 564
                W  ++ G   H G   +A ++    Q+KG     GI++L
Sbjct: 364 KDTIAWTVVIIGLASH-GHGNEALSIFQRMQEKGNATPDGITYL 406



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 171/340 (50%), Gaps = 16/340 (4%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           ++ Y S+ LL  Y   G++     +F++IP+ NVV+W  +I G+  N     +++AF  M
Sbjct: 140 VNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNNRFSDAIEAFREM 199

Query: 63  MLSGLLPNSFTMVGVLVAAAGL----------QNLELARSIHGLMVKFG---LESDLFEG 109
             +G+  N   MV +LVA               N+ LA S+  +  K G       LF+G
Sbjct: 200 QSNGVKANETIMVDLLVACGRCFDPYFQSKVGFNVILATSLIDMYAKCGDLRTARYLFDG 259

Query: 110 LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALC 169
           +    LVS N+I+ G+  N   ++A+ +F      G+ P+ VT L+VIR  +  G   L 
Sbjct: 260 MPERTLVSWNSIITGYSQNGDAEEALCMFLDMLDLGIAPDKVTFLSVIRASMIQGCSQLG 319

Query: 170 ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDF 229
           + IH    K G + D ++  ++++MY+   D ++A + F ++E KD I+WT ++      
Sbjct: 320 QSIHAYVSKTGFVKDAAIVCALVNMYAKTGDAESAKKAFEDLEKKDTIAWTVVIIGLASH 379

Query: 230 EYAGDALKIFREMR-KSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV-LGGLQSELR 287
            +  +AL IF+ M+ K     D +  L ++   + +G ++ G++  A++  L GL+  + 
Sbjct: 380 GHGNEALSIFQRMQEKGNATPDGITYLGVLYACSHIGLVEEGQRYFAEMRDLHGLEPTVE 439

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVS-WTAIISG 326
               ++ + S+ G  + +  +   +  K  V+ W A+++G
Sbjct: 440 HYGCMVDILSRAGRFEEAERLVKTMPVKPNVNIWGALLNG 479



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 107/251 (42%), Gaps = 53/251 (21%)

Query: 2   CIDPYNSSK----------LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGF 51
           C DPY  SK          L+  Y K G ++ A  LFD +PE+ +VSW+ +I GYS NG 
Sbjct: 221 CFDPYFQSKVGFNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGD 280

Query: 52  HEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------ 105
            E+++  F  M+  G+ P+  T + V+ A+      +L +SIH  + K G   D      
Sbjct: 281 AEEALCMFLDMLDLGIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCA 340

Query: 106 ----------------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSG-LVP 148
                            FE L+    ++   ++ G  ++    +A+ +F   +  G   P
Sbjct: 341 LVNMYAKTGDAESAKKAFEDLEKKDTIAWTVVIIGLASHGHGNEALSIFQRMQEKGNATP 400

Query: 149 NAVTMLTVIRGC-----VALGSRALCEL--IHGLTIKLGLILDVSVNNSVLDMYSCLMDL 201
           + +T L V+  C     V  G R   E+  +HGL                ++ Y C++D+
Sbjct: 401 DGITYLGVLYACSHIGLVEEGQRYFAEMRDLHGL-------------EPTVEHYGCMVDI 447

Query: 202 DAAIQIFREME 212
            +    F E E
Sbjct: 448 LSRAGRFEEAE 458


>gi|7523419|emb|CAB86438.1| putative protein [Arabidopsis thaliana]
          Length = 1017

 Score =  238 bits (607), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 167/616 (27%), Positives = 300/616 (48%), Gaps = 70/616 (11%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEK-NVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLP 69
           L+S Y K+  +  A  LFD   EK + V W+ ++  YS +G   ++++ F  M ++G  P
Sbjct: 186 LVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAP 245

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-----------------------L 106
           NS+T+V  L A  G    +L + IH  ++K    S                        +
Sbjct: 246 NSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERI 305

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
              + N  +V+ N+++ G++ N ++++A+  F+    +G   + V+M ++I     L + 
Sbjct: 306 LRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNL 365

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYS-----CLMDLDAAIQIFREMECKDVISWTR 221
                +H   IK G   ++ V N+++DMYS     C M      + F  M  KD+ISWT 
Sbjct: 366 LAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMG-----RAFLRMHDKDLISWTT 420

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++  +   +   +AL++FR++ K R+  D + L +++  +++L  +   K++H  ++  G
Sbjct: 421 VIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKG 480

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           L   + + N ++ +Y KC ++  +  VF  I  K +VSWT++IS    NG   EA+  F 
Sbjct: 481 LLDTV-IQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFR 539

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +M  E   S DS+ L+ IL+A+  L+AL    ++H      GF    S+   ++  Y+ C
Sbjct: 540 RM-VETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACC 598

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G++  A  VF+ +   + ++ + ++I  YG++G G+ A+ L+ KM      PD  ++L++
Sbjct: 599 GDLQSAKAVFDRIE-RKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLAL 657

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L AC HAGL ++G      M  E +++P  EHY C+VD+L RA C+ +A      +    
Sbjct: 658 LYACSHAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEP 717

Query: 522 GPNIWRALLSGCVLHV---------------------------------GRFQDAEALRS 548
              +W ALL+ C  H                                  GR+ D E +R+
Sbjct: 718 TAEVWCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRA 777

Query: 549 GSQKKGIIKIPGISFL 564
             +  G+ K PG S++
Sbjct: 778 KMKASGMEKHPGCSWI 793



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 136/477 (28%), Positives = 234/477 (49%), Gaps = 27/477 (5%)

Query: 25  ENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGL 84
           E +FDE+P++   +W+ +I  Y  NG    ++  + +M + G+     +   +L A A L
Sbjct: 99  EKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKL 158

Query: 85  QNLELARSIHGLMVKFGLESD----------------------LFEGLKNP-YLVSCNAI 121
           +++     +H L+VK G  S                       LF+G +     V  N+I
Sbjct: 159 RDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSI 218

Query: 122 VAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGL 181
           ++ +  +    + + LF     +G  PN+ T+++ +  C       L + IH   +K   
Sbjct: 219 LSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSST 278

Query: 182 -ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFR 240
              ++ V N+++ MY+    +  A +I R+M   DV++W  ++  +V      +AL+ F 
Sbjct: 279 HSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFS 338

Query: 241 EMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCG 300
           +M  +    D V++ ++I+ +  L +L  G +LHA V+  G  S L++ N++I MYSKC 
Sbjct: 339 DMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCN 398

Query: 301 DLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSIL 360
                   F ++ +K L+SWT +I+GY QN C  EAL  F  + +++ + +D + L SIL
Sbjct: 399 LTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRME-IDEMILGSIL 457

Query: 361 TASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDV 420
            AS  L ++ I  ++H      G      +QN L+  Y KC N+  A  VFE +   +DV
Sbjct: 458 RASSVLKSMLIVKEIHCHILRKGLLD-TVIQNELVDVYGKCRNMGYATRVFESIKG-KDV 515

Query: 421 VSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVI 477
           VSW ++I    +NG+   A+ L+ +M ETG   DS   L IL+A       N G  I
Sbjct: 516 VSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSALNKGREI 572



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 103/379 (27%), Positives = 204/379 (53%), Gaps = 24/379 (6%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y  + L++ Y + GK+ +AE +  ++   +VV+W+ +I GY  N  ++++++ FS M+ +
Sbjct: 284 YVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAA 343

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL------------------- 106
           G   +  +M  ++ A+  L NL     +H  ++K G +S+L                   
Sbjct: 344 GHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYM 403

Query: 107 ---FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
              F  + +  L+S   ++AG+  N    +A+ LF       +  + + + +++R    L
Sbjct: 404 GRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVL 463

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
            S  + + IH   ++ GL LD  + N ++D+Y    ++  A ++F  ++ KDV+SWT M+
Sbjct: 464 KSMLIVKEIHCHILRKGL-LDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMI 522

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
                     +A+++FR M ++ +  D+VALL ++S  A L  L +G+++H  ++  G  
Sbjct: 523 SSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFC 582

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
            E  ++ +++ MY+ CGDL S+++VF++I  K L+ +T++I+ Y  +GC + A+  F KM
Sbjct: 583 LEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKM 642

Query: 344 RQEKTDSVDSITLVSILTA 362
           R E   S D I+ +++L A
Sbjct: 643 RHENV-SPDHISFLALLYA 660



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 99/368 (26%), Positives = 176/368 (47%), Gaps = 12/368 (3%)

Query: 103 ESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA 162
           +  +F+ + +    + N ++  +++N     A+ L+   R  G+     +   +++ C  
Sbjct: 98  QEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAK 157

Query: 163 LGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK-DVISWTR 221
           L        +H L +KLG      + N+++ MY+   DL AA ++F   + K D + W  
Sbjct: 158 LRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNS 217

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++  +     + + L++FREM  +    ++  +++ ++        K GK++HA V+   
Sbjct: 218 ILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSS 277

Query: 282 LQ-SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
              SEL + N++IAMY++CG +  +  +  Q+    +V+W ++I GYVQN   +EAL  F
Sbjct: 278 THSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFF 337

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
             M      S D +++ SI+ ASG L+ L   ++LH    + G+     V N LI  YSK
Sbjct: 338 SDMIAAGHKS-DEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSK 396

Query: 401 CGNVDLAYIVFEEMGFLR----DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
           C         +    FLR    D++SW T+I GY  N     AL L+  + +     D  
Sbjct: 397 CN-----LTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEM 451

Query: 457 TYLSILNA 464
              SIL A
Sbjct: 452 ILGSILRA 459



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/292 (28%), Positives = 146/292 (50%), Gaps = 10/292 (3%)

Query: 183 LDVSVNNSVLDMYSCLMDL------DAAIQIFREMECKDVISWTRMMGLFVDFEYAGDAL 236
           LDVS NNS ++ ++ +++L       +  ++F EM  +   +W  M+G +V       AL
Sbjct: 71  LDVSENNSPVEAFAYVLELCGKRRAVSQEKVFDEMPDRTAFAWNTMIGAYVSNGEPASAL 130

Query: 237 KIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMY 296
            ++  MR   +     +   L+   A L D++ G +LH+ +V  G  S   + N++++MY
Sbjct: 131 ALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMY 190

Query: 297 SKCGDLDSSRSVFNQITEK-SLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSIT 355
           +K  DL ++R +F+   EK   V W +I+S Y  +G + E L  F +M      + +S T
Sbjct: 191 AKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHM-TGPAPNSYT 249

Query: 356 LVSILTASGELAALEICLQLHGIAFEAGFPRYR-SVQNCLISSYSKCGNVDLAYIVFEEM 414
           +VS LTA    +  ++  ++H    ++        V N LI+ Y++CG +  A  +  +M
Sbjct: 250 IVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQM 309

Query: 415 GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
               DVV+WN++I GY  N   + AL  +  M   G   D  +  SI+ A G
Sbjct: 310 NNA-DVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASG 360



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 105/233 (45%), Gaps = 6/233 (2%)

Query: 304 SSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTAS 363
           S   VF+++ +++  +W  +I  YV NG    AL  +  MR E    +   +  ++L A 
Sbjct: 97  SQEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGV-PLGLSSFPALLKAC 155

Query: 364 GELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSW 423
            +L  +    +LH +  + G+     + N L+S Y+K  ++  A  +F+      D V W
Sbjct: 156 AKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLW 215

Query: 424 NTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIE 483
           N+I+  Y  +G     L L+ +M  TG  P+S T +S L AC        G  I   +++
Sbjct: 216 NSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLK 275

Query: 484 ENKVKPSQEHYGC--VVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCV 534
            +    S E Y C  ++ +  R G +  A  +  + +       W +L+ G V
Sbjct: 276 SS--THSSELYVCNALIAMYTRCGKMPQAERIL-RQMNNADVVTWNSLIKGYV 325



 Score = 47.0 bits (110), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 86/184 (46%), Gaps = 22/184 (11%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D    ++L+  Y K   +  A  +F+ I  K+VVSW+ +I   ++NG   ++++ F  M
Sbjct: 482 LDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRM 541

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK--FGLESDL-------------- 106
           + +GL  +S  ++ +L AAA L  L   R IH  +++  F LE  +              
Sbjct: 542 VETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDL 601

Query: 107 ------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                 F+ ++   L+   +++  +  +   + AV LF+  R   + P+ ++ L ++  C
Sbjct: 602 QSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYAC 661

Query: 161 VALG 164
              G
Sbjct: 662 SHAG 665


>gi|302814190|ref|XP_002988779.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
 gi|300143350|gb|EFJ10041.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
          Length = 796

 Score =  238 bits (607), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 159/554 (28%), Positives = 267/554 (48%), Gaps = 35/554 (6%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           ++++  Y K G +  A   FD I  KN  SW  ++  Y+ NG +  ++  +  M    L 
Sbjct: 62  NEIVRAYGKCGSVASARVAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRM---DLQ 118

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIH-------GLMVKFGLESDL--------------- 106
           PN      VL A A ++ LE  ++IH       GL +   LE+ L               
Sbjct: 119 PNPVVYTTVLGACASIEALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKR 178

Query: 107 -FEGLKNPYLVSC-NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
            FE +     VS  NA++A +  +  F++A+ L+       + P+  T  +V+  C  LG
Sbjct: 179 LFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYEDM---DVEPSVRTFTSVLSACSNLG 235

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
                  IH L    G  LD+S+ N++L MY+    LD A +IF+ +  +DV+SW+ M+ 
Sbjct: 236 LLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIA 295

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            F + +   +A++ + +M+   +  +     +++   A +GDL+ G+ +H Q++  G + 
Sbjct: 296 AFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKI 355

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
            L    +++ +Y+  G LD +RS+F+QI  +    WT +I GY + G     L  + +M+
Sbjct: 356 TLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMK 415

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
                    I    +++A   L A     Q H      G      +   L++ YS+ GN+
Sbjct: 416 NTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFVLATSLVNMYSRWGNL 475

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           + A  VF++M   RD ++W T+I GY  +G    AL LY +M   G  P   T++ +L A
Sbjct: 476 ESARQVFDKMSS-RDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYA 534

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C HAGL   G  +F  +  +  + P+  HY C++DLL+RAG LSDA  L   +   + PN
Sbjct: 535 CSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAM--PVEPN 592

Query: 525 --IWRALLSGCVLH 536
              W +LL    +H
Sbjct: 593 DVTWSSLLGASRIH 606



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/253 (30%), Positives = 130/253 (51%), Gaps = 10/253 (3%)

Query: 266 DLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIIS 325
           DL+  +Q+H ++  G   + + L N I+  Y KCG + S+R  F+ I  K+  SW ++++
Sbjct: 39  DLESVRQIHDRIS-GAASANVFLGNEIVRAYGKCGSVASARVAFDAIARKNDYSWGSMLT 97

Query: 326 GYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHG-IAFEAGF 384
            Y QNG  R AL+ + +M  +     + +   ++L A   + ALE    +H  I+   G 
Sbjct: 98  AYAQNGHYRAALDLYKRMDLQP----NPVVYTTVLGACASIEALEEGKAIHSRISGTKGL 153

Query: 385 PRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH 444
                ++N L++ Y+KCG+++ A  +FE M   R V SWN +I  Y  +GH E A+ LY 
Sbjct: 154 KLDVILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYE 213

Query: 445 KMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARA 504
            M      P   T+ S+L+AC + GL + G  I + +I     +        ++ + AR 
Sbjct: 214 DMDVE---PSVRTFTSVLSACSNLGLLDQGRKI-HALISSRGTELDLSLQNALLTMYARC 269

Query: 505 GCLSDASGLAGKL 517
            CL DA+ +  +L
Sbjct: 270 KCLDDAAKIFQRL 282



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 46/218 (21%), Positives = 95/218 (43%), Gaps = 29/218 (13%)

Query: 7   NSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSG 66
           N + L+  Y   G + EA +LFD+I  ++   W+++I GYS  G     ++ +  M  + 
Sbjct: 359 NGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTT 418

Query: 67  LLPNSFTMVGVLVAA-AGLQNLELARSIH------GLMVKFGLESDL------------- 106
            +P +  +   +++A A L     AR  H      G++  F L + L             
Sbjct: 419 KVPATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFVLATSLVNMYSRWGNLESA 478

Query: 107 ---FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
              F+ + +   ++   ++AG+  +     A+ L+      G  P+ +T + V+  C   
Sbjct: 479 RQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYACSHA 538

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDL 201
           G +       G  + + +  D +++ ++   YSC++DL
Sbjct: 539 GLQE-----QGKQLFISIQSDYAMHPNIA-HYSCIIDL 570


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  238 bits (607), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 161/561 (28%), Positives = 277/561 (49%), Gaps = 37/561 (6%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEI----PEKNVVSWSIVIHGYSIN-----GFHEKSMKAF 59
           S L+S Y ++G+ +EA   + E+     + N  ++S V+ G S+      G     +   
Sbjct: 117 SALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGCSLTRNLELGKQIHRVALV 176

Query: 60  SHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG---------- 109
           + M+ +G+ PN F++  VL A AGL++      +HG ++K G +SD F            
Sbjct: 177 TEMISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANALLDMYAKS 236

Query: 110 ------------LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
                       +  P +VS NA++AG + ++    A+ L        + P+  T+ + +
Sbjct: 237 GCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSAL 296

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
           + C A+G   L   +H   +K+ +  D  V   ++DMYS    L  A  +F  M  KDVI
Sbjct: 297 KACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVI 356

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG--KQLHA 275
            W  ++  + +  Y  +A+ +F  M K  +  +   L  ++   A  G    G  +Q+H 
Sbjct: 357 VWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTA--GSQANGFCEQVHT 414

Query: 276 QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
             +  G Q +  ++NS++  Y KC  L+ +  VF     + LV++T++I+ Y Q G   E
Sbjct: 415 ISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEE 474

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLI 395
           AL  +++M Q++    D+    S+  A   L+A E   Q+H    + G        N L+
Sbjct: 475 ALKMYLRM-QDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGLLSDVFAGNSLV 533

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
           + Y+KCG++D A  +F E+ + R +VSW+ +I G   +GHG  AL L+++M + G +P+ 
Sbjct: 534 NMYAKCGSIDDASCIFNEISW-RGIVSWSAMIGGLAQHGHGRKALQLFYQMLKNGILPNH 592

Query: 456 STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAG 515
            T +S+L+AC HAGL  +    F  M +   + P+QEHY C+VD+L R G L +A  L  
Sbjct: 593 ITLVSVLSACNHAGLVTEARRFFGLMEKLFGITPTQEHYACMVDILGRVGRLDEAMVLVK 652

Query: 516 KLLEGMGPNIWRALLSGCVLH 536
           ++       +W ALL    +H
Sbjct: 653 EMPFQASAAVWGALLGAARIH 673



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 124/447 (27%), Positives = 224/447 (50%), Gaps = 24/447 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           DP++++ LL  Y KSG  + A  +F EIP+ ++VSW+ VI G  ++  ++ ++K    M 
Sbjct: 222 DPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMG 281

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG-------------- 109
              + P+ FT+   L A A +  ++L R +H  ++K  +E D F G              
Sbjct: 282 SYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQ 341

Query: 110 --------LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                   +    ++  N+I++G+ N     +A+ LF      GL  N  T+ T+++   
Sbjct: 342 DARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTA 401

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
              +   CE +H ++IK G   D  V NS+LD Y     L+ A ++F     +D++++T 
Sbjct: 402 GSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTS 461

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+  +  +    +ALK++  M+   I  D     +L +  A L   ++GKQ+H  V+  G
Sbjct: 462 MITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCG 521

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           L S++   NS++ MY+KCG +D +  +FN+I+ + +VSW+A+I G  Q+G  R+AL  F 
Sbjct: 522 LLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWRGIVSWSAMIGGLAQHGHGRKALQLFY 581

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEA-GFPRYRSVQNCLISSYSK 400
           +M +      + ITLVS+L+A      +    +  G+  +  G    +    C++    +
Sbjct: 582 QMLKNGILP-NHITLVSVLSACNHAGLVTEARRFFGLMEKLFGITPTQEHYACMVDILGR 640

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTII 427
            G +D A ++ +EM F      W  ++
Sbjct: 641 VGRLDEAMVLVKEMPFQASAAVWGALL 667



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 157/543 (28%), Positives = 255/543 (46%), Gaps = 46/543 (8%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTM 74
           Y K    + A  L  +  E ++VSWS +I GY  NG  E+++  +  M L G   N FT 
Sbjct: 92  YSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTF 151

Query: 75  VGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQA 134
             VL   +  +NLEL + IH +                       A+V   I+       
Sbjct: 152 SSVLKGCSLTRNLELGKQIHRV-----------------------ALVTEMIS------- 181

Query: 135 VLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDM 194
                    +G+ PN  ++ TV+  C  L        +HG  IKLG   D    N++LDM
Sbjct: 182 ---------TGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANALLDM 232

Query: 195 YSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVAL 254
           Y+     +AAI +F E+   D++SW  ++   V  E    ALK+  +M   R+      L
Sbjct: 233 YAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTL 292

Query: 255 LNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE 314
            + +   A +G +K G+QLH+ ++   ++ +  +   +I MYSKCG L  +R VF+ +  
Sbjct: 293 SSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPX 352

Query: 315 KSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQ 374
           K ++ W +IISGY   G   EA++ F  M +E  +  +  TL +IL ++    A   C Q
Sbjct: 353 KDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLE-FNQTTLSTILKSTAGSQANGFCEQ 411

Query: 375 LHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNG 434
           +H I+ ++G+     V N L+ SY KC  ++ A  VF E+    D+V++ ++I  Y   G
Sbjct: 412 VHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVF-EVCPAEDLVAYTSMITAYSQYG 470

Query: 435 HGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY 494
            GE AL +Y +M +    PD+  + S+ NAC +      G  I   +++   +  S    
Sbjct: 471 LGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGLL--SDVFA 528

Query: 495 G-CVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKK 553
           G  +V++ A+ G + DAS +  + +   G   W A++ G   H G  + A  L     K 
Sbjct: 529 GNSLVNMYAKCGSIDDASCIFNE-ISWRGIVSWSAMIGGLAQH-GHGRKALQLFYQMLKN 586

Query: 554 GII 556
           GI+
Sbjct: 587 GIL 589



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 133/306 (43%), Gaps = 45/306 (14%)

Query: 266 DLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIIS 325
           D+  G  +HA+++       L L N ++ +YSKC     +R +    +E  LVSW+A+IS
Sbjct: 65  DVSSGMAIHARIIR---LGLLGLRNRLVNLYSKCQCFRVARKLVIDSSEPDLVSWSALIS 121

Query: 326 GYVQNGCAREALNQFIKM-----------------------RQEKTDSVDSITLVSILTA 362
           GYVQNG   EAL  + +M                         E    +  + LV+ + +
Sbjct: 122 GYVQNGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGCSLTRNLELGKQIHRVALVTEMIS 181

Query: 363 SG-------------ELAALE---ICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
           +G               A LE     +++HG   + G+       N L+  Y+K G  + 
Sbjct: 182 TGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANALLDMYAKSGCPEA 241

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           A  VF E+    D+VSWN +I G  ++   + AL L  KM      P   T  S L AC 
Sbjct: 242 AIAVFYEIP-KPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSALKACA 300

Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIW 526
             GL   G  + + +++ +    S    G ++D+ ++ G L DA  +   L+      +W
Sbjct: 301 AIGLVKLGRQLHSALMKMDMEPDSFVGVG-LIDMYSKCGLLQDAR-MVFDLMPXKDVIVW 358

Query: 527 RALLSG 532
            +++SG
Sbjct: 359 NSIISG 364



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 152/350 (43%), Gaps = 47/350 (13%)

Query: 192 LDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMR-------- 243
           +++YS       A ++  +    D++SW+ ++  +V      +AL  + EM         
Sbjct: 89  VNLYSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNE 148

Query: 244 --------------------------------KSRIICDTVALLNLISVNAILGDLKRGK 271
                                            + I  +  +L  +++  A L D   G 
Sbjct: 149 FTFSSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGM 208

Query: 272 QLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNG 331
           ++H  ++  G  S+   +N+++ MY+K G  +++ +VF +I +  +VSW A+I+G V + 
Sbjct: 209 KVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHE 268

Query: 332 CAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ 391
               AL    KM   +  +    TL S L A   +  +++  QLH    +        V 
Sbjct: 269 KNDLALKLLGKMGSYRV-APSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVG 327

Query: 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE 451
             LI  YSKCG +  A +VF+ M   +DV+ WN+II GY   G+   A++L+  M + G 
Sbjct: 328 VGLIDMYSKCGLLQDARMVFDLMP-XKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGL 386

Query: 452 VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLL 501
             + +T  +IL +   AG   +G   F + +    +K   ++ G V + L
Sbjct: 387 EFNQTTLSTILKST--AGSQANG---FCEQVHTISIKSGYQYDGYVANSL 431


>gi|413923618|gb|AFW63550.1| hypothetical protein ZEAMMB73_399779 [Zea mays]
          Length = 1118

 Score =  238 bits (607), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 150/492 (30%), Positives = 259/492 (52%), Gaps = 28/492 (5%)

Query: 70   NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-----------------------L 106
            + FT+  +L A   L +L   R++H   V+    S+                        
Sbjct: 565  DGFTLSLLLRACTALPSLTHGRAVHAAAVRSCTASEDAFVATAIVQMYSRCGDMAGAINA 624

Query: 107  FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLF-NFFRGSGLVPNAVTMLTVIRGCVALGS 165
            +  L+ P +V   ++V G+  N + ++A+  F     G G++   VT+++V+     LG 
Sbjct: 625  YGMLEKPDIVLRTSVVTGYEQNGMAEEALEFFARNVVGQGVLVTPVTLVSVMSAAAQLGH 684

Query: 166  RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
                +  H   ++  L  D+++ N+VL  Y  + DL A++++F  M  +DVI+W+ M+  
Sbjct: 685  VRKGQACHAYVVRNSLSYDLALVNAVLGFYVKIGDLQASMRLFEGMTDRDVITWSCMIKG 744

Query: 226  FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
            +V    A    +++REM K+R+  ++V L++++   A++ D + GK+LH   V  G + E
Sbjct: 745  YVQHGDAHTGFRMYREMVKARVQPNSVTLVSVLQACALVVDAEEGKRLHRVAVSIGCELE 804

Query: 286  LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
            L ++ +++ MY KC   + +  +F+++ +K +V+W A+I G  QN    E+L+ F  M  
Sbjct: 805  LGVATALVDMYMKCSCHEEAMRLFHRMPKKDVVAWAAVIGGLTQNELPGESLHSFKCMLL 864

Query: 346  EKTDSV-DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
               D V D++T+V +L A  E     + + LHG     GF     V   L+  YSKCG++
Sbjct: 865  --NDHVPDAVTMVKVLAACSEFGGNRLAICLHGYLVRNGFNNNAFVAAALLDLYSKCGDL 922

Query: 405  DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
            D A  VFE     +D+V W ++I GYG +G G+ A+ALY +M  +   P++ T+LS+L+A
Sbjct: 923  DSAVRVFEGTTE-KDIVVWGSMIAGYGAHGLGQEAVALYQRMIASSIQPNNVTFLSVLSA 981

Query: 465  CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
            C H+GL  +G+ IF+ M +   V P+ EH   +VDLL RAG L +A  +   +      +
Sbjct: 982  CSHSGLVQEGIQIFDSMTQVFGVVPNAEHQSAMVDLLGRAGELQEAIRVIRDMDGRAVAH 1041

Query: 525  IWRALLSGCVLH 536
             W ALL+ C  H
Sbjct: 1042 TWCALLAACRKH 1053



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 124/456 (27%), Positives = 217/456 (47%), Gaps = 26/456 (5%)

Query: 101 GLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
           GL  DLF+ +++P     NA++   I  + ++ A+LL    R   +  +  T+  ++R C
Sbjct: 520 GLARDLFDEIRSPTPRLANALLRAHIRARQWRAAILLGQRLR---VRRDGFTLSLLLRAC 576

Query: 161 VALGSRALCELIHGLTIKLGLIL------DVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
            AL S     L HG  +    +       D  V  +++ MYS   D+  AI  +  +E  
Sbjct: 577 TALPS-----LTHGRAVHAAAVRSCTASEDAFVATAIVQMYSRCGDMAGAINAYGMLEKP 631

Query: 215 DVISWTRMMGLFVDFEYAGDALKIF-REMRKSRIICDTVALLNLISVNAILGDLKRGKQL 273
           D++  T ++  +     A +AL+ F R +    ++   V L++++S  A LG +++G+  
Sbjct: 632 DIVLRTSVVTGYEQNGMAEEALEFFARNVVGQGVLVTPVTLVSVMSAAAQLGHVRKGQAC 691

Query: 274 HAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA 333
           HA VV   L  +L L N+++  Y K GDL +S  +F  +T++ +++W+ +I GYVQ+G A
Sbjct: 692 HAYVVRNSLSYDLALVNAVLGFYVKIGDLQASMRLFEGMTDRDVITWSCMIKGYVQHGDA 751

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC 393
                 + +M + +    +S+TLVS+L A   +   E   +LH +A   G      V   
Sbjct: 752 HTGFRMYREMVKARVQP-NSVTLVSVLQACALVVDAEEGKRLHRVAVSIGCELELGVATA 810

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           L+  Y KC   + A  +F  M   +DVV+W  +I G   N     +L  +  M     VP
Sbjct: 811 LVDMYMKCSCHEEAMRLFHRMP-KKDVVAWAAVIGGLTQNELPGESLHSFKCMLLNDHVP 869

Query: 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL 513
           D+ T + +L AC   G  N   +  +  +  N    +      ++DL ++ G L  A   
Sbjct: 870 DAVTMVKVLAACSEFG-GNRLAICLHGYLVRNGFNNNAFVAAALLDLYSKCGDLDSAV-- 926

Query: 514 AGKLLEGMGPN---IWRALLSGCVLHVGRFQDAEAL 546
             ++ EG       +W ++++G   H G  Q+A AL
Sbjct: 927 --RVFEGTTEKDIVVWGSMIAGYGAH-GLGQEAVAL 959



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 91/382 (23%), Positives = 197/382 (51%), Gaps = 24/382 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + ++ ++  Y + G +  A N +  + + ++V  + V+ GY  NG  E++++ F+  +
Sbjct: 601 DAFVATAIVQMYSRCGDMAGAINAYGMLEKPDIVLRTSVVTGYEQNGMAEEALEFFARNV 660

Query: 64  L-SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
           +  G+L    T+V V+ AAA L ++   ++ H  +V+  L  D                 
Sbjct: 661 VGQGVLVTPVTLVSVMSAAAQLGHVRKGQACHAYVVRNSLSYDLALVNAVLGFYVKIGDL 720

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                LFEG+ +  +++ + ++ G++ +        ++     + + PN+VT+++V++ C
Sbjct: 721 QASMRLFEGMTDRDVITWSCMIKGYVQHGDAHTGFRMYREMVKARVQPNSVTLVSVLQAC 780

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             +      + +H + + +G  L++ V  +++DMY      + A+++F  M  KDV++W 
Sbjct: 781 ALVVDAEEGKRLHRVAVSIGCELELGVATALVDMYMKCSCHEEAMRLFHRMPKKDVVAWA 840

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++G     E  G++L  F+ M  +  + D V ++ +++  +  G  +    LH  +V  
Sbjct: 841 AVIGGLTQNELPGESLHSFKCMLLNDHVPDAVTMVKVLAACSEFGGNRLAICLHGYLVRN 900

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           G  +   ++ +++ +YSKCGDLDS+  VF   TEK +V W ++I+GY  +G  +EA+  +
Sbjct: 901 GFNNNAFVAAALLDLYSKCGDLDSAVRVFEGTTEKDIVVWGSMIAGYGAHGLGQEAVALY 960

Query: 341 IKMRQEKTDSVDSITLVSILTA 362
            +M        +++T +S+L+A
Sbjct: 961 QRMIASSIQP-NNVTFLSVLSA 981



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 164/340 (48%), Gaps = 24/340 (7%)

Query: 11   LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
            +L  Y K G ++ +  LF+ + +++V++WS +I GY  +G      + +  M+ + + PN
Sbjct: 710  VLGFYVKIGDLQASMRLFEGMTDRDVITWSCMIKGYVQHGDAHTGFRMYREMVKARVQPN 769

Query: 71   SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFE 108
            S T+V VL A A + + E  + +H + V  G E +                      LF 
Sbjct: 770  SVTLVSVLQACALVVDAEEGKRLHRVAVSIGCELELGVATALVDMYMKCSCHEEAMRLFH 829

Query: 109  GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
             +    +V+  A++ G   N+L  +++  F     +  VP+AVTM+ V+  C   G   L
Sbjct: 830  RMPKKDVVAWAAVIGGLTQNELPGESLHSFKCMLLNDHVPDAVTMVKVLAACSEFGGNRL 889

Query: 169  CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
               +HG  ++ G   +  V  ++LD+YS   DLD+A+++F     KD++ W  M+  +  
Sbjct: 890  AICLHGYLVRNGFNNNAFVAAALLDLYSKCGDLDSAVRVFEGTTEKDIVVWGSMIAGYGA 949

Query: 229  FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQL-HAQVVLGGLQSELR 287
                 +A+ +++ M  S I  + V  L+++S  +  G ++ G Q+  +   + G+     
Sbjct: 950  HGLGQEAVALYQRMIASSIQPNNVTFLSVLSACSHSGLVQEGIQIFDSMTQVFGVVPNAE 1009

Query: 288  LSNSIIAMYSKCGDLDSSRSVFNQITEKSLV-SWTAIISG 326
              ++++ +  + G+L  +  V   +  +++  +W A+++ 
Sbjct: 1010 HQSAMVDLLGRAGELQEAIRVIRDMDGRAVAHTWCALLAA 1049



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 120/241 (49%), Gaps = 24/241 (9%)

Query: 8    SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
            ++ L+  Y K    +EA  LF  +P+K+VV+W+ VI G + N    +S+ +F  M+L+  
Sbjct: 808  ATALVDMYMKCSCHEEAMRLFHRMPKKDVVAWAAVIGGLTQNELPGESLHSFKCMLLNDH 867

Query: 68   LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
            +P++ TMV VL A +      LA  +HG +V+ G  ++                      
Sbjct: 868  VPDAVTMVKVLAACSEFGGNRLAICLHGYLVRNGFNNNAFVAAALLDLYSKCGDLDSAVR 927

Query: 106  LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG- 164
            +FEG     +V   +++AG+  + L Q+AV L+     S + PN VT L+V+  C   G 
Sbjct: 928  VFEGTTEKDIVVWGSMIAGYGAHGLGQEAVALYQRMIASSIQPNNVTFLSVLSACSHSGL 987

Query: 165  SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI-SWTRMM 223
             +   ++   +T   G++ +    ++++D+     +L  AI++ R+M+ + V  +W  ++
Sbjct: 988  VQEGIQIFDSMTQVFGVVPNAEHQSAMVDLLGRAGELQEAIRVIRDMDGRAVAHTWCALL 1047

Query: 224  G 224
             
Sbjct: 1048 A 1048


>gi|297835788|ref|XP_002885776.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331616|gb|EFH62035.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 582

 Score =  238 bits (607), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 159/529 (30%), Positives = 263/529 (49%), Gaps = 31/529 (5%)

Query: 31  IPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELA 90
           +PE++ V W+ +I GYS NG+   + K F  M+  G  P++ T+V +L        +   
Sbjct: 1   MPERDTVVWNALICGYSRNGYESDAWKLFIVMLQQGFSPSATTLVNLLPFCGQCGFVSQG 60

Query: 91  RSIHGLMVKFGLESD----------------------LFEGLKNPYLVSCNAIVAGFINN 128
           RS+HG+  K GLE D                      LF  +K+   VS N ++  +  +
Sbjct: 61  RSVHGIAAKSGLEMDSQVKNALISFYSKCAELDSAEVLFREMKDKSTVSWNTMIGAYSQS 120

Query: 129 KLFQQAVLLF-NFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSV 187
            L ++A+ +F N F  S  + + VT++ ++   V+       E +H L +K G++ D+SV
Sbjct: 121 GLMEEAITVFKNMFEKSVEI-SPVTIINLLSAHVSH------EPLHCLVVKSGMVNDISV 173

Query: 188 NNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRI 247
             S++  YS    LD+A +++       ++  T ++  + +      A+  F +MR+  +
Sbjct: 174 VTSLVCAYSRCGYLDSAERLYASANQDSIVGLTSIVSSYAEKGDMDIAVVYFSKMRQLCM 233

Query: 248 ICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRS 307
             D VAL+ ++        +  G  LH   +  GL  +  + N +I MYSK  D+++   
Sbjct: 234 KIDAVALVGILHGCKNSSHIDIGMSLHGYAIKSGLCRKTLVVNGLITMYSKFDDVETVLF 293

Query: 308 VFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELA 367
           +F Q+ E  L+SW ++ISG VQ+G A  A   F +M+       D+IT+ S+L    +L 
Sbjct: 294 LFQQLQETPLISWNSVISGCVQSGRASTAFEVFHQMKLSGGLLPDAITIASLLAGCSQLC 353

Query: 368 ALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
            L +  +LHG      F     V   LI  Y+KCGN   A  VF+ +       +WN++I
Sbjct: 354 CLNLGKELHGYTLRNNFENENFVCTALIDMYAKCGNEVQAESVFKSIK-APCTATWNSMI 412

Query: 428 YGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKV 487
            GY ++G    AL+ Y +M E G  PD  T+L +L+AC H G  ++G + F  MI+E  +
Sbjct: 413 SGYSLSGLQNRALSCYLEMREKGLKPDKITFLGVLSACTHGGFVDEGKIYFRAMIKEFGI 472

Query: 488 KPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
            P  +HY  +V LL RA   ++A  L  K+       +W ALLS C++H
Sbjct: 473 SPCLQHYALMVGLLGRACLFTEALYLIWKMDIKPDSAVWGALLSACIIH 521



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 101/383 (26%), Positives = 186/383 (48%), Gaps = 30/383 (7%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D    + L+S Y K  ++  AE LF E+ +K+ VSW+ +I  YS +G  E+++  F +M
Sbjct: 74  MDSQVKNALISFYSKCAELDSAEVLFREMKDKSTVSWNTMIGAYSQSGLMEEAITVFKNM 133

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
               +  +  T++ +L A    + L      H L+VK G+ +D                 
Sbjct: 134 FEKSVEISPVTIINLLSAHVSHEPL------HCLVVKSGMVNDISVVTSLVCAYSRCGYL 187

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                L+       +V   +IV+ +        AV+ F+  R   +  +AV ++ ++ GC
Sbjct: 188 DSAERLYASANQDSIVGLTSIVSSYAEKGDMDIAVVYFSKMRQLCMKIDAVALVGILHGC 247

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
                  +   +HG  IK GL     V N ++ MYS   D++  + +F++++   +ISW 
Sbjct: 248 KNSSHIDIGMSLHGYAIKSGLCRKTLVVNGLITMYSKFDDVETVLFLFQQLQETPLISWN 307

Query: 221 RMMGLFVDFEYAGDALKIFREMRKS-RIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
            ++   V    A  A ++F +M+ S  ++ D + + +L++  + L  L  GK+LH   + 
Sbjct: 308 SVISGCVQSGRASTAFEVFHQMKLSGGLLPDAITIASLLAGCSQLCCLNLGKELHGYTLR 367

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
              ++E  +  ++I MY+KCG+   + SVF  I      +W ++ISGY  +G    AL+ 
Sbjct: 368 NNFENENFVCTALIDMYAKCGNEVQAESVFKSIKAPCTATWNSMISGYSLSGLQNRALSC 427

Query: 340 FIKMRQEKTDSVDSITLVSILTA 362
           +++MR EK    D IT + +L+A
Sbjct: 428 YLEMR-EKGLKPDKITFLGVLSA 449


>gi|255585273|ref|XP_002533336.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526827|gb|EEF29045.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 708

 Score =  238 bits (607), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 157/558 (28%), Positives = 271/558 (48%), Gaps = 34/558 (6%)

Query: 4   DPYNSSKLLSNYFK--SGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           D Y ++ +LS Y +  SG +  A NLFDE+  ++ V+W+ +I GY  +G    + + +  
Sbjct: 33  DIYATNNILSRYTRCSSGGLTFACNLFDEMSHRDTVTWNTMISGYVNSGSLGSAWELYKS 92

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG------------ 109
           M   GL+P+++T   +L   A    L++ + +H L+VK G E  ++ G            
Sbjct: 93  MKSFGLMPDAYTFGSILKGVACACRLDVGQQVHSLIVKMGYEEHVYAGSALLDMYAKCER 152

Query: 110 LKNPYLV----------SCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
           +++ ++V          S NA++AGF+       A  L       G+  +  T   ++  
Sbjct: 153 VRDAFMVFKCIPRRNSVSWNALIAGFVLEGDHDTAFWLLRCMEEEGVRLDDGTFSPLLTL 212

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFR-EMECKDVIS 218
                   L   +H   IK G+  D +V N+ +  YS    L+ A ++F   +  +D+++
Sbjct: 213 LDEKKFYKLTMQLHCKIIKHGVQFDNTVCNATITSYSQCGSLEDAERVFDGAVGSRDLVT 272

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           W  M+  F+  +    A K+F +M++     D      +IS          GK LH  V+
Sbjct: 273 WNSMLAAFLAHDRKETAFKLFLDMQQFGFEPDIYTYTTIISA---CSHKDNGKSLHGLVI 329

Query: 279 LGGLQSELRLSNSIIAMY--SKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
             GL+  + + N++IAMY  S    ++ + +VF+ +  K  VSW +I++G+ Q G +  A
Sbjct: 330 KRGLEQLVPICNAVIAMYLESSSNSMEDALNVFHSMESKDRVSWNSILTGFSQTGHSENA 389

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
           L  F+ MR    D +D     ++L +  +LA L++  Q+H +  ++GF     V + LI 
Sbjct: 390 LKLFVHMRFAVVD-IDHYAFSAVLRSCSDLATLQLGQQIHVLTVKSGFESNDFVASSLIF 448

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDV-VSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
            YSKCG ++ A   FE+    +D  ++WN+I++ Y  +G G+ AL L+ +M +     D 
Sbjct: 449 MYSKCGMIEDARKSFEKTA--KDSSITWNSIMFAYAQHGQGDVALGLFFQMRDKKVKMDH 506

Query: 456 STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAG 515
            T+++ L AC H GL   G  +   M  +  + P  EHY C VDL  RAG L +A  L  
Sbjct: 507 ITFVAALTACSHIGLVEQGRYLLKSMASDYGISPRMEHYACAVDLFGRAGYLDEAKALIE 566

Query: 516 KLLEGMGPNIWRALLSGC 533
            +       +W+ LL  C
Sbjct: 567 SMPFDPDAMVWKTLLGAC 584



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 138/509 (27%), Positives = 241/509 (47%), Gaps = 32/509 (6%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y  S LL  Y K  ++++A  +F  IP +N VSW+ +I G+ + G H+ +      M   
Sbjct: 138 YAGSALLDMYAKCERVRDAFMVFKCIPRRNSVSWNALIAGFVLEGDHDTAFWLLRCMEEE 197

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-------------------- 105
           G+  +  T   +L      +  +L   +H  ++K G++ D                    
Sbjct: 198 GVRLDDGTFSPLLTLLDEKKFYKLTMQLHCKIIKHGVQFDNTVCNATITSYSQCGSLEDA 257

Query: 106 --LFEG-LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA 162
             +F+G + +  LV+ N+++A F+ +   + A  LF   +  G  P+  T  T+I  C  
Sbjct: 258 ERVFDGAVGSRDLVTWNSMLAAFLAHDRKETAFKLFLDMQQFGFEPDIYTYTTIISAC-- 315

Query: 163 LGSRALCELIHGLTIKLGLILDVSVNNSVLDMY--SCLMDLDAAIQIFREMECKDVISWT 220
              +   + +HGL IK GL   V + N+V+ MY  S    ++ A+ +F  ME KD +SW 
Sbjct: 316 -SHKDNGKSLHGLVIKRGLEQLVPICNAVIAMYLESSSNSMEDALNVFHSMESKDRVSWN 374

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++  F    ++ +ALK+F  MR + +  D  A   ++   + L  L+ G+Q+H   V  
Sbjct: 375 SILTGFSQTGHSENALKLFVHMRFAVVDIDHYAFSAVLRSCSDLATLQLGQQIHVLTVKS 434

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           G +S   +++S+I MYSKCG ++ +R  F +  + S ++W +I+  Y Q+G    AL  F
Sbjct: 435 GFESNDFVASSLIFMYSKCGMIEDARKSFEKTAKDSSITWNSIMFAYAQHGQGDVALGLF 494

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQ-LHGIAFEAGFPRYRSVQNCLISSYS 399
            +MR +K   +D IT V+ LTA   +  +E     L  +A + G         C +  + 
Sbjct: 495 FQMRDKKV-KMDHITFVAALTACSHIGLVEQGRYLLKSMASDYGISPRMEHYACAVDLFG 553

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           + G +D A  + E M F  D + W T++      G  E A  +   + E  E  +  TY+
Sbjct: 554 RAGYLDEAKALIESMPFDPDAMVWKTLLGACRACGDIELAAQVASHLLEL-EPEEHCTYV 612

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVK 488
            + N  GH    ++   +  +++ E KVK
Sbjct: 613 ILSNMYGHLKRWDEKACM-ARLMRERKVK 640



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 99/192 (51%), Gaps = 4/192 (2%)

Query: 274 HAQVVLGGLQSELRLSNSIIAMYSKC--GDLDSSRSVFNQITEKSLVSWTAIISGYVQNG 331
           H Q +  G  +++  +N+I++ Y++C  G L  + ++F++++ +  V+W  +ISGYV +G
Sbjct: 22  HCQTIKLGRSADIYATNNILSRYTRCSSGGLTFACNLFDEMSHRDTVTWNTMISGYVNSG 81

Query: 332 CAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ 391
               A   +  M+       D+ T  SIL        L++  Q+H +  + G+  +    
Sbjct: 82  SLGSAWELYKSMKSFGL-MPDAYTFGSILKGVACACRLDVGQQVHSLIVKMGYEEHVYAG 140

Query: 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE 451
           + L+  Y+KC  V  A++VF+ +   R+ VSWN +I G+ + G  +TA  L   M E G 
Sbjct: 141 SALLDMYAKCERVRDAFMVFKCIP-RRNSVSWNALIAGFVLEGDHDTAFWLLRCMEEEGV 199

Query: 452 VPDSSTYLSILN 463
             D  T+  +L 
Sbjct: 200 RLDDGTFSPLLT 211


>gi|255583926|ref|XP_002532711.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527557|gb|EEF29678.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 679

 Score =  238 bits (607), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 148/546 (27%), Positives = 285/546 (52%), Gaps = 44/546 (8%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ L++ Y K  ++ +   +FD I E+++VSW+ +I  +      E +++AF  M+   L
Sbjct: 116 ANSLVNFYGKCSELDDVYKVFDRINERDLVSWNSLISAFCRAQEWELALEAFRFMLAEDL 175

Query: 68  LPNSFTMVGVLVAAAGLQN---LELARSIHGLMVKFGLESD------------------- 105
            P+SFT+V  ++A + L+    L L + IHG   + G  S                    
Sbjct: 176 EPSSFTLVSPVIACSNLRKHEGLRLGKQIHGYCFRNGHWSTFTNNALMTMYANLGRLDDA 235

Query: 106 --LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
             LF+  ++  L+S N +++ F  N+ F +A++   +    G+ P+ VT+ +V+  C  L
Sbjct: 236 KFLFKLFEDRNLISWNTMISSFSQNERFVEALMSLRYMVLEGVKPDGVTLASVLPACSYL 295

Query: 164 GSRALCELIHGLTIKLGLILDVS-VNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
                 + IH   ++ G +++ S V ++++DMY     + +  ++F  +  +    W  M
Sbjct: 296 EMLGTGKEIHAYALRSGDLIENSFVGSALVDMYCNCGQVGSGRRVFDGILERKTGLWNAM 355

Query: 223 MGLFVDFEYAGDALKIFREMRKSRIIC-DTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           +  +   E+   AL +F EM     +C +T  + +++  +A        + +H  V+   
Sbjct: 356 IAGYAQNEHDEKALMLFIEMVAVAGLCPNTTTMASIVPASARCESFFSKESIHGYVIKRD 415

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           L+ +  + N+++ MYS+   ++ S+++F+ +  + +VSW  +I+GYV +GC  +AL    
Sbjct: 416 LERDRYVQNALMDMYSRMRKMEISKTIFDSMEVRDIVSWNTMITGYVISGCYNDALLMLH 475

Query: 342 KMRQ-----EKTD-------SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS 389
           +M+       K D         +SITL+++L     LAAL    ++H  A         +
Sbjct: 476 EMQHANEGINKHDGDKQACFKPNSITLMTVLPGCASLAALAKGKEIHAYAVRNALASEVT 535

Query: 390 VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
           V + L+  Y+KCG ++L+  VF++M  +++V++WN I+  YG++G+GE AL L+  M   
Sbjct: 536 VGSALVDMYAKCGCLNLSRRVFDQMP-IKNVITWNVIVMAYGMHGNGEEALELFKDMVAK 594

Query: 450 GE-----VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARA 504
           G+      P   T ++IL AC H+G+ ++GL +F++M +++ ++P  +HY CV DLL RA
Sbjct: 595 GDNVGEVKPTEVTMIAILAACSHSGMVDEGLKLFHRMKDDHGIEPGPDHYACVADLLGRA 654

Query: 505 GCLSDA 510
           G +  A
Sbjct: 655 GKVEQA 660



 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 148/551 (26%), Positives = 257/551 (46%), Gaps = 50/551 (9%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPE-----KNVVSWSIVIHGYSINGFHEKSMK 57
           + P+  S +LS+  ++ ++   + L    P+     ++  SW   +   + +    +++ 
Sbjct: 6   LQPF--SPILSSSAQTHELPTKKFLSHSPPKPISQSRSQASWIESLRFNTRSNLFREAIS 63

Query: 58  AFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------ 105
            +  M+LSG+ P+S+    VL A  GLQ+L L + IH  +VK+G ES             
Sbjct: 64  TYVDMILSGVSPDSYAFPVVLKAVTGLQDLNLGKQIHAHVVKYGYESSSVAIANSLVNFY 123

Query: 106 -----------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTML 154
                      +F+ +    LVS N++++ F   + ++ A+  F F     L P++ T++
Sbjct: 124 GKCSELDDVYKVFDRINERDLVSWNSLISAFCRAQEWELALEAFRFMLAEDLEPSSFTLV 183

Query: 155 TVIRGCVALGSRA---LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM 211
           + +  C  L       L + IHG   + G       NN+++ MY+ L  LD A  +F+  
Sbjct: 184 SPVIACSNLRKHEGLRLGKQIHGYCFRNGH-WSTFTNNALMTMYANLGRLDDAKFLFKLF 242

Query: 212 ECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGK 271
           E +++ISW  M+  F   E   +AL   R M    +  D V L +++   + L  L  GK
Sbjct: 243 EDRNLISWNTMISSFSQNERFVEALMSLRYMVLEGVKPDGVTLASVLPACSYLEMLGTGK 302

Query: 272 QLHAQVVLGG-LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
           ++HA  +  G L     + ++++ MY  CG + S R VF+ I E+    W A+I+GY QN
Sbjct: 303 EIHAYALRSGDLIENSFVGSALVDMYCNCGQVGSGRRVFDGILERKTGLWNAMIAGYAQN 362

Query: 331 GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV 390
               +AL  FI+M        ++ T+ SI+ AS    +      +HG   +    R R V
Sbjct: 363 EHDEKALMLFIEMVAVAGLCPNTTTMASIVPASARCESFFSKESIHGYVIKRDLERDRYV 422

Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
           QN L+  YS+   ++++  +F+ M  +RD+VSWNT+I GY ++G    AL + H+M    
Sbjct: 423 QNALMDMYSRMRKMEISKTIFDSME-VRDIVSWNTMITGYVISGCYNDALLMLHEMQHAN 481

Query: 451 E-------------VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCV 497
           E              P+S T +++L  C        G  I    +  N +         +
Sbjct: 482 EGINKHDGDKQACFKPNSITLMTVLPGCASLAALAKGKEIHAYAV-RNALASEVTVGSAL 540

Query: 498 VDLLARAGCLS 508
           VD+ A+ GCL+
Sbjct: 541 VDMYAKCGCLN 551



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 126/452 (27%), Positives = 225/452 (49%), Gaps = 56/452 (12%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           + ++ L++ Y   G++ +A+ LF    ++N++SW+ +I  +S N    +++ +  +M+L 
Sbjct: 217 FTNNALMTMYANLGRLDDAKFLFKLFEDRNLISWNTMISSFSQNERFVEALMSLRYMVLE 276

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG--LESD------------------ 105
           G+ P+  T+  VL A + L+ L   + IH   ++ G  +E+                   
Sbjct: 277 GVKPDGVTLASVLPACSYLEMLGTGKEIHAYALRSGDLIENSFVGSALVDMYCNCGQVGS 336

Query: 106 ---LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLF-NFFRGSGLVPNAVTMLTVIRGCV 161
              +F+G+        NA++AG+  N+  ++A++LF      +GL PN  TM +++    
Sbjct: 337 GRRVFDGILERKTGLWNAMIAGYAQNEHDEKALMLFIEMVAVAGLCPNTTTMASIVPASA 396

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
              S    E IHG  IK  L  D  V N+++DMYS +  ++ +  IF  ME +D++SW  
Sbjct: 397 RCESFFSKESIHGYVIKRDLERDRYVQNALMDMYSRMRKMEISKTIFDSMEVRDIVSWNT 456

Query: 222 MMGLFVDFEYAGDALKIFREMRKS----------RIIC---DTVALLNLISVNAILGDLK 268
           M+  +V      DAL +  EM+ +          +  C   +++ L+ ++   A L  L 
Sbjct: 457 MITGYVISGCYNDALLMLHEMQHANEGINKHDGDKQACFKPNSITLMTVLPGCASLAALA 516

Query: 269 RGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYV 328
           +GK++HA  V   L SE+ + ++++ MY+KCG L+ SR VF+Q+  K++++W  I+  Y 
Sbjct: 517 KGKEIHAYAVRNALASEVTVGSALVDMYAKCGCLNLSRRVFDQMPIKNVITWNVIVMAYG 576

Query: 329 QNGCAREALNQFIKMRQEKTDSV-----DSITLVSILTASGELAALEICLQL-------H 376
            +G   EAL  F  M   K D+V       +T+++IL A      ++  L+L       H
Sbjct: 577 MHGNGEEALELFKDM-VAKGDNVGEVKPTEVTMIAILAACSHSGMVDEGLKLFHRMKDDH 635

Query: 377 GIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
           GI  E G   Y  V + L     + G V+ AY
Sbjct: 636 GI--EPGPDHYACVADLL----GRAGKVEQAY 661



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 142/303 (46%), Gaps = 8/303 (2%)

Query: 234 DALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE-LRLSNSI 292
           +A+  + +M  S +  D+ A   ++     L DL  GKQ+HA VV  G +S  + ++NS+
Sbjct: 60  EAISTYVDMILSGVSPDSYAFPVVLKAVTGLQDLNLGKQIHAHVVKYGYESSSVAIANSL 119

Query: 293 IAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVD 352
           +  Y KC +LD    VF++I E+ LVSW ++IS + +      AL  F  M  E  +   
Sbjct: 120 VNFYGKCSELDDVYKVFDRINERDLVSWNSLISAFCRAQEWELALEAFRFMLAEDLEP-S 178

Query: 353 SITLVSILTASGEL---AALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYI 409
           S TLVS + A   L     L +  Q+HG  F  G     +  N L++ Y+  G +D A  
Sbjct: 179 SFTLVSPVIACSNLRKHEGLRLGKQIHGYCFRNGHWSTFT-NNALMTMYANLGRLDDAKF 237

Query: 410 VFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAG 469
           +F ++   R+++SWNT+I  +  N     AL     M   G  PD  T  S+L AC +  
Sbjct: 238 LF-KLFEDRNLISWNTMISSFSQNERFVEALMSLRYMVLEGVKPDGVTLASVLPACSYLE 296

Query: 470 LTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRAL 529
           +   G  I    +    +  +      +VD+    G +     +   +LE     +W A+
Sbjct: 297 MLGTGKEIHAYALRSGDLIENSFVGSALVDMYCNCGQVGSGRRVFDGILE-RKTGLWNAM 355

Query: 530 LSG 532
           ++G
Sbjct: 356 IAG 358



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 97/240 (40%), Gaps = 50/240 (20%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + L+  Y +  K++ ++ +FD +  +++VSW+ +I GY I+G +  ++     M 
Sbjct: 419 DRYVQNALMDMYSRMRKMEISKTIFDSMEVRDIVSWNTMITGYVISGCYNDALLMLHEMQ 478

Query: 64  LSG-------------LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----- 105
            +                PNS T++ VL   A L  L   + IH   V+  L S+     
Sbjct: 479 HANEGINKHDGDKQACFKPNSITLMTVLPGCASLAALAKGKEIHAYAVRNALASEVTVGS 538

Query: 106 -----------------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSG--- 145
                            +F+ +    +++ N IV  +  +   ++A+ LF      G   
Sbjct: 539 ALVDMYAKCGCLNLSRRVFDQMPIKNVITWNVIVMAYGMHGNGEEALELFKDMVAKGDNV 598

Query: 146 --LVPNAVTMLTVIRGCVALG--SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDL 201
             + P  VTM+ ++  C   G     L +L H +    G+           D Y+C+ DL
Sbjct: 599 GEVKPTEVTMIAILAACSHSGMVDEGL-KLFHRMKDDHGI-------EPGPDHYACVADL 650


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  238 bits (607), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 149/479 (31%), Positives = 242/479 (50%), Gaps = 35/479 (7%)

Query: 119 NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIK 178
           N ++ G ++   F  AV L+     + +VP++ T   V++ C  L    L  +IH L  K
Sbjct: 73  NTMIRGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACARLNLFHLGVMIHSLVFK 132

Query: 179 LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKI 238
            G   DV V  +V+  YS    L  A ++F +M  K+V+SWT M+   ++F    +A+ +
Sbjct: 133 TGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEFGKFREAVDL 192

Query: 239 FREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSK 298
           FR + +S +  D   ++ ++   A LGDL+ G+ +   +   GL   + ++ S++ MY+K
Sbjct: 193 FRGLLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRECGLSRNVFVATSLVDMYTK 252

Query: 299 CGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVS 358
           CG ++ +R VF+ + EK +V W+A+I GY  NG  REA+  F +MR+      D   +V 
Sbjct: 253 CGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKVNVRP-DCYAMVG 311

Query: 359 ILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLR 418
            L++   L ALE+     G+     F     +   LI  Y+KCG+++ A  V++ M   +
Sbjct: 312 ALSSCASLGALELGNWAKGLMNYEEFLSNPVLGTSLIDFYAKCGSMEEALGVYKMMK-EK 370

Query: 419 DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIF 478
           D V +N +I G  + G    A  ++ +M + G  P+  T++ +L  C HAGL +DG   F
Sbjct: 371 DRVVFNAVISGLAMYGQVGAAFGVFGQMGKFGIPPNEHTFVGLLCGCTHAGLVDDGRHYF 430

Query: 479 NQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH-- 536
           N M  +  V P+ EHYGC+VDLLARAG L +A  L   +       +W +LL GC LH  
Sbjct: 431 NSMSHDFSVTPTIEHYGCMVDLLARAGFLDEAHNLIKGMPMKANVIVWGSLLGGCRLHRE 490

Query: 537 -------------------------------VGRFQDAEALRSGSQKKGIIKIPGISFL 564
                                            R+ +AE +RS   +KG+ K+PG S++
Sbjct: 491 TQLAEHVLKQLIELEPWNSGHYVLLSNIYSASRRWDEAEKIRSTVNEKGMQKLPGYSWV 549



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 110/443 (24%), Positives = 191/443 (43%), Gaps = 35/443 (7%)

Query: 27  LFDEIP-EKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQ 85
           +F + P   N   ++ +I G         ++  ++ M  + ++P+SFT   VL A A L 
Sbjct: 59  VFHKTPTNSNTFLYNTMIRGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACARLN 118

Query: 86  NLELARSIHGLMVKFGLESDLFEG------------LKNPY----------LVSCNAIVA 123
              L   IH L+ K G + D+F              L++ +          +VS   ++ 
Sbjct: 119 LFHLGVMIHSLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMIC 178

Query: 124 GFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLIL 183
           G I    F++AV LF     SGL P+   ++ V+R C  LG       I     + GL  
Sbjct: 179 GCIEFGKFREAVDLFRGLLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRECGLSR 238

Query: 184 DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMR 243
           +V V  S++DMY+    ++ A  +F  M  KD++ W+ M+  +       +A+++F EMR
Sbjct: 239 NVFVATSLVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMR 298

Query: 244 KSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLD 303
           K  +  D  A++  +S  A LG L+ G      +      S   L  S+I  Y+KCG ++
Sbjct: 299 KVNVRPDCYAMVGALSSCASLGALELGNWAKGLMNYEEFLSNPVLGTSLIDFYAKCGSME 358

Query: 304 SSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTAS 363
            +  V+  + EK  V + A+ISG    G    A   F +M +      +  T V +L   
Sbjct: 359 EALGVYKMMKEKDRVVFNAVISGLAMYGQVGAAFGVFGQMGKFGIPP-NEHTFVGLLCGC 417

Query: 364 GELAALEICLQL-----HGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLR 418
                ++          H  +       Y     C++   ++ G +D A+ + + M    
Sbjct: 418 THAGLVDDGRHYFNSMSHDFSVTPTIEHY----GCMVDLLARAGFLDEAHNLIKGMPMKA 473

Query: 419 DVVSWNTIIYGYGVNGHGETALA 441
           +V+ W +++ G  +  H ET LA
Sbjct: 474 NVIVWGSLLGGCRL--HRETQLA 494



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 87/392 (22%), Positives = 179/392 (45%), Gaps = 39/392 (9%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + ++  Y K G +++A  +FD++  KNVVSW+ +I G    G   +++  F  ++
Sbjct: 138 DVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEFGKFREAVDLFRGLL 197

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
            SGL P+ F +V VL A A L +LE  R I   M + GL  +                  
Sbjct: 198 ESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRECGLSRNVFVATSLVDMYTKCGSME 257

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +F+G+    +V  +A++ G+ +N L ++A+ LF   R   + P+   M+  +  C 
Sbjct: 258 EARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKVNVRPDCYAMVGALSSCA 317

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
           +LG+  L     GL      + +  +  S++D Y+    ++ A+ +++ M+ KD + +  
Sbjct: 318 SLGALELGNWAKGLMNYEEFLSNPVLGTSLIDFYAKCGSMEEALGVYKMMKEKDRVVFNA 377

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++     +   G A  +F +M K  I  +    + L+      G +  G+          
Sbjct: 378 VISGLAMYGQVGAAFGVFGQMGKFGIPPNEHTFVGLLCGCTHAGLVDDGRHY-----FNS 432

Query: 282 LQSELRLSNSI------IAMYSKCGDLDSSRSVFNQITEKS-LVSWTAIISG---YVQNG 331
           +  +  ++ +I      + + ++ G LD + ++   +  K+ ++ W +++ G   + +  
Sbjct: 433 MSHDFSVTPTIEHYGCMVDLLARAGFLDEAHNLIKGMPMKANVIVWGSLLGGCRLHRETQ 492

Query: 332 CAREALNQFIKMRQEKTDSVDSITLVSILTAS 363
            A   L Q I++  E  +S   + L +I +AS
Sbjct: 493 LAEHVLKQLIEL--EPWNSGHYVLLSNIYSAS 522



 Score = 42.4 bits (98), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 71/168 (42%), Gaps = 15/168 (8%)

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           L S+ +   N     +VF +     +   +NT+I G         A+ LY  M +   VP
Sbjct: 43  LRSTINFSNNAQYPILVFHKTPTNSNTFLYNTMIRGMVSKDRFNNAVHLYASMHKAAIVP 102

Query: 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL 513
           DS T+  +L AC    L + G++I + + +          + C V +     C     G 
Sbjct: 103 DSFTFSFVLKACARLNLFHLGVMIHSLVFKTG--------FDCDVFVKTNVVCFYSKCGF 154

Query: 514 ---AGKLLEGM-GPNI--WRALLSGCVLHVGRFQDAEALRSGSQKKGI 555
              A K+ + M   N+  W  ++ GC+   G+F++A  L  G  + G+
Sbjct: 155 LRDAWKVFDDMVVKNVVSWTGMICGCI-EFGKFREAVDLFRGLLESGL 201


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  238 bits (606), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 164/574 (28%), Positives = 270/574 (47%), Gaps = 75/574 (13%)

Query: 65  SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---LFEGLKNPYLVSCNAI 121
           SGLLP++     V  A  G +NL    S+   + + GL  D   LF  L     VS NA+
Sbjct: 59  SGLLPHARR---VFDAMPG-RNLVTGNSLLSALARAGLVRDMERLFTSLPQRDAVSYNAL 114

Query: 122 VAGFINNKLFQQAVLLF-NFFRG-SGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKL 179
           +AGF       +A   +    R  +G+ P+ +TM  V+    ALG RAL   +H   ++L
Sbjct: 115 LAGFSRAGAHARAAGAYVALLRDEAGVRPSRITMSGVVMVASALGDRALGRQVHCQILRL 174

Query: 180 GLILDVSVNNSVLDMYSCLMDLDAAIQIFREME----------------CK--------- 214
           G        + ++DMY+ +  +  A ++F EME                CK         
Sbjct: 175 GFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCNTMITGLLRCKMVAEARALF 234

Query: 215 ------DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLK 268
                 D I+WT M+          +AL +FR MR   +  D     ++++    L  L+
Sbjct: 235 EAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTACGALAALE 294

Query: 269 RGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYV 328
            GKQ+HA +     +  + + ++++ MYSKC  +  + +VF ++  K+++SWTA+I GY 
Sbjct: 295 EGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYG 354

Query: 329 QNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYR 388
           QNGC  EA+  F +M+++     D  TL S++++   LA+LE   Q H +A  +G   Y 
Sbjct: 355 QNGCGEEAVRVFSEMQRDGIKP-DDFTLGSVISSCANLASLEEGAQFHCLALVSGLRPYV 413

Query: 389 SVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTE 448
           +V N L++ Y KCG+++ A+ +F+EM F  D VSW  ++ GY   G  +  + L+ KM  
Sbjct: 414 TVSNALVTLYGKCGSIEDAHRLFDEMSF-HDQVSWTALVMGYAQFGKAKETIDLFEKMLS 472

Query: 449 TGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLS 508
            G  PD  T++ +L+AC  +GL + G   F+ M +++ + P  +HY C++DL +R+G L 
Sbjct: 473 KGVKPDGVTFIGVLSACSRSGLVDKGRSYFHSMQQDHDIVPLDDHYTCMIDLYSRSGWLK 532

Query: 509 DASGLAGKLLEGMGPNIWRALLSGCVLH-------------------------------- 536
            A     ++        W  LLS C L                                 
Sbjct: 533 QAEEFIKQMPRCPDAFGWATLLSACRLRGDMEIGKWAAENLLKLDPQNPASYVLLCSMHA 592

Query: 537 -VGRFQDAEALRSGSQKKGIIKIPGISFLNSTSR 569
             G + D   LR G + + + K PG S++   ++
Sbjct: 593 SKGEWNDVAKLRRGMRDRQVKKEPGCSWIKYKNK 626



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 117/483 (24%), Positives = 222/483 (45%), Gaps = 57/483 (11%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML--SGLL 68
           LLS   ++G +++ E LF  +P+++ VS++ ++ G+S  G H ++  A+  ++   +G+ 
Sbjct: 83  LLSALARAGLVRDMERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVR 142

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG------------------- 109
           P+  TM GV++ A+ L +  L R +H  +++ G  +  F G                   
Sbjct: 143 PSRITMSGVVMVASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRV 202

Query: 110 ---LKNPYLVSCNAIVAGFINNKLFQQAVLLFNF-------------------------- 140
              ++   +V CN ++ G +  K+  +A  LF                            
Sbjct: 203 FDEMEGKNVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEAL 262

Query: 141 -----FRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMY 195
                 R  G+  +  T  +++  C AL +    + IH    +     +V V ++++DMY
Sbjct: 263 DVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMY 322

Query: 196 SCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALL 255
           S    +  A  +FR M  K++ISWT M+  +       +A+++F EM++  I  D   L 
Sbjct: 323 SKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLG 382

Query: 256 NLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK 315
           ++IS  A L  L+ G Q H   ++ GL+  + +SN+++ +Y KCG ++ +  +F++++  
Sbjct: 383 SVISSCANLASLEEGAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFH 442

Query: 316 SLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQ- 374
             VSWTA++ GY Q G A+E ++ F KM   K    D +T + +L+A      ++     
Sbjct: 443 DQVSWTALVMGYAQFGKAKETIDLFEKM-LSKGVKPDGVTFIGVLSACSRSGLVDKGRSY 501

Query: 375 LHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNG 434
            H +  +           C+I  YS+ G +  A    ++M    D   W T++    + G
Sbjct: 502 FHSMQQDHDIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQMPRCPDAFGWATLLSACRLRG 561

Query: 435 HGE 437
             E
Sbjct: 562 DME 564



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 108/249 (43%), Gaps = 44/249 (17%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           S L+  Y K   ++ AE +F  +  KN++SW+ +I GY  NG  E++++ FS M   G+ 
Sbjct: 316 SALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIK 375

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES----------------------DL 106
           P+ FT+  V+ + A L +LE     H L +  GL                         L
Sbjct: 376 PDDFTLGSVISSCANLASLEEGAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRL 435

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           F+ +     VS  A+V G+      ++ + LF      G+ P+ VT + V+  C    SR
Sbjct: 436 FDEMSFHDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSAC----SR 491

Query: 167 ALCELIHGLTIK-LGLILDVSVNNSVL---DMYSCLMD-------LDAAIQIFREM-ECK 214
           +      GL  K       +  ++ ++   D Y+C++D       L  A +  ++M  C 
Sbjct: 492 S------GLVDKGRSYFHSMQQDHDIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQMPRCP 545

Query: 215 DVISWTRMM 223
           D   W  ++
Sbjct: 546 DAFGWATLL 554



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 49/82 (59%), Gaps = 2/82 (2%)

Query: 3   IDPYN--SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           + PY   S+ L++ Y K G I++A  LFDE+   + VSW+ ++ GY+  G  ++++  F 
Sbjct: 409 LRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLFE 468

Query: 61  HMMLSGLLPNSFTMVGVLVAAA 82
            M+  G+ P+  T +GVL A +
Sbjct: 469 KMLSKGVKPDGVTFIGVLSACS 490


>gi|413916018|gb|AFW55950.1| hypothetical protein ZEAMMB73_919937 [Zea mays]
          Length = 864

 Score =  238 bits (606), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 158/569 (27%), Positives = 265/569 (46%), Gaps = 28/569 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D    S L+  Y K   + +A   F  + E+N VSW   I G   N  + + M+ F  M 
Sbjct: 185 DVRAGSALVDMYGKCRSLDDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGMELFVQMQ 244

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
             GL  +         + A +  L  AR +H   +K    SD                  
Sbjct: 245 RLGLGVSQPAYASAFRSCAAMPCLSTARQLHAHAIKNVFSSDRVVGTAIVDVYAKAGNLV 304

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                F GL +  + +CNA++ G +   L  +A+ LF F   SG+  + +++  V   C 
Sbjct: 305 DARRAFIGLPHHNVETCNAMMVGLVRTGLGAEAMQLFQFMTRSGVGFDVISLSGVFSACA 364

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            +        +H L +K G  +DV V N++LD+Y     L  A  +F+EME +D +SW  
Sbjct: 365 EVKGYFQGLQVHCLAVKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNA 424

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++      E   D +    EM +S +  D     +++   A L  L+ G  +H + +  G
Sbjct: 425 IIAALEQNECYEDTIAHLNEMLRSGMEPDDFTYGSVLKACAGLQSLEYGLVVHGKAIKSG 484

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           L  +  +S++++ MY KCG +  ++ + ++I  + LVSW +IISG+     + EA   F 
Sbjct: 485 LGLDAFVSSTVVDMYCKCGAITEAQKLHDRIGGQELVSWNSIISGFSLTKQSEEAQRFFS 544

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +M        D  T  ++L     LA +E+  Q+HG   +        + + L+  Y+KC
Sbjct: 545 EMLDMGVKP-DHFTYATVLDTCANLATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKC 603

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           GN+  + ++FE+   L D VSWN +I GY ++G G  AL ++ +M     VP+ +T++++
Sbjct: 604 GNMPDSLLMFEKARKL-DFVSWNAMICGYALHGQGLEALEMFERMQRANVVPNHATFVAV 662

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L AC H GL +DG   F+ M    K+ P  EH+ C+VD+L R+    +A      +    
Sbjct: 663 LRACSHVGLLDDGCQYFHLMTSRYKLVPQLEHFACMVDILGRSKGPQEALEFIRSMPIEA 722

Query: 522 GPNIWRALLSGCVLHVGRFQDAEALRSGS 550
              +W+ LLS C +     QD E   + +
Sbjct: 723 DAVVWKTLLSICKIR----QDVEVAETAA 747



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 149/560 (26%), Positives = 261/560 (46%), Gaps = 30/560 (5%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  D  + + +L+ Y  +G    A +LF  +P+ +VVSW+ +I GY  +G    S+    
Sbjct: 81  PHRDTVSWNTMLTAYVHAGDTDTAASLFGTMPDPDVVSWNTLISGYCQHGMFRNSVGLSM 140

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL-------------- 106
            M   G+  +  T+  +L +  GL +L L   IH L VK GLE+D+              
Sbjct: 141 EMSRRGVALDRTTLAVLLKSCGGLDDLALGVQIHALAVKTGLETDVRAGSALVDMYGKCR 200

Query: 107 --------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                   F G+     VS  A +AG + N+ + + + LF   +  GL  +     +  R
Sbjct: 201 SLDDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQPAYASAFR 260

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C A+   +    +H   IK     D  V  +++D+Y+   +L  A + F  +   +V +
Sbjct: 261 SCAAMPCLSTARQLHAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFIGLPHHNVET 320

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
              MM   V      +A+++F+ M +S +  D ++L  + S  A +    +G Q+H   V
Sbjct: 321 CNAMMVGLVRTGLGAEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQGLQVHCLAV 380

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
             G   ++ + N+I+ +Y KC  L  +  VF ++ ++  VSW AII+   QN C  + + 
Sbjct: 381 KSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIA 440

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
              +M +   +  D  T  S+L A   L +LE  L +HG A ++G      V + ++  Y
Sbjct: 441 HLNEMLRSGMEP-DDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMY 499

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
            KCG +  A  + + +G  +++VSWN+II G+ +    E A   + +M + G  PD  TY
Sbjct: 500 CKCGAITEAQKLHDRIGG-QELVSWNSIISGFSLTKQSEEAQRFFSEMLDMGVKPDHFTY 558

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY--GCVVDLLARAGCLSDASGLAGK 516
            ++L+ C +      G  I  Q+I++  +    + Y    +VD+ A+ G + D S L  +
Sbjct: 559 ATVLDTCANLATIELGKQIHGQIIKQEMLG---DEYISSTLVDMYAKCGNMPD-SLLMFE 614

Query: 517 LLEGMGPNIWRALLSGCVLH 536
               +    W A++ G  LH
Sbjct: 615 KARKLDFVSWNAMICGYALH 634



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 142/292 (48%), Gaps = 22/292 (7%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D    + +L  Y K   + EA  +F E+ +++ VSW+ +I     N  +E ++   + M
Sbjct: 386 VDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAHLNEM 445

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--------------- 107
           + SG+ P+ FT   VL A AGLQ+LE    +HG  +K GL  D F               
Sbjct: 446 LRSGMEPDDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGAI 505

Query: 108 -------EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                  + +    LVS N+I++GF   K  ++A   F+     G+ P+  T  TV+  C
Sbjct: 506 TEAQKLHDRIGGQELVSWNSIISGFSLTKQSEEAQRFFSEMLDMGVKPDHFTYATVLDTC 565

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             L +  L + IHG  IK  ++ D  ++++++DMY+   ++  ++ +F +    D +SW 
Sbjct: 566 ANLATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKARKLDFVSWN 625

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQ 272
            M+  +       +AL++F  M+++ ++ +    + ++   + +G L  G Q
Sbjct: 626 AMICGYALHGQGLEALEMFERMQRANVVPNHATFVAVLRACSHVGLLDDGCQ 677



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 120/254 (47%), Gaps = 38/254 (14%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D + SS ++  Y K G I EA+ L D I  + +VSW+ +I G+S+    E++ + FS M
Sbjct: 487 LDAFVSSTVVDMYCKCGAITEAQKLHDRIGGQELVSWNSIISGFSLTKQSEEAQRFFSEM 546

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
           +  G+ P+ FT   VL   A L  +EL + IHG ++K  +  D                 
Sbjct: 547 LDMGVKPDHFTYATVLDTCANLATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNM 606

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +FE  +    VS NA++ G+  +    +A+ +F   + + +VPN  T + V+R C
Sbjct: 607 PDSLLMFEKARKLDFVSWNAMICGYALHGQGLEALEMFERMQRANVVPNHATFVAVLRAC 666

Query: 161 VALG-SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDL-------DAAIQIFREME 212
             +G     C+  H +T +  L+         L+ ++C++D+         A++  R M 
Sbjct: 667 SHVGLLDDGCQYFHLMTSRYKLVPQ-------LEHFACMVDILGRSKGPQEALEFIRSMP 719

Query: 213 CK-DVISWTRMMGL 225
            + D + W  ++ +
Sbjct: 720 IEADAVVWKTLLSI 733



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 117/275 (42%), Gaps = 34/275 (12%)

Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKC--------------------------- 299
           L  G+  HA++++ G      +SN ++ MY++C                           
Sbjct: 35  LTTGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGTAHAHGVFDTMPHRDTVSWNTMLTA 94

Query: 300 ----GDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSIT 355
               GD D++ S+F  + +  +VSW  +ISGY Q+G  R ++   ++M +    ++D  T
Sbjct: 95  YVHAGDTDTAASLFGTMPDPDVVSWNTLISGYCQHGMFRNSVGLSMEMSRRGV-ALDRTT 153

Query: 356 LVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMG 415
           L  +L + G L  L + +Q+H +A + G        + L+  Y KC ++D A   F  MG
Sbjct: 154 LAVLLKSCGGLDDLALGVQIHALAVKTGLETDVRAGSALVDMYGKCRSLDDALRFFHGMG 213

Query: 416 FLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGL 475
             R+ VSW   I G   N      + L+ +M   G       Y S   +C      +   
Sbjct: 214 -ERNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQPAYASAFRSCAAMPCLSTAR 272

Query: 476 VIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
            +    I +N     +     +VD+ A+AG L DA
Sbjct: 273 QLHAHAI-KNVFSSDRVVGTAIVDVYAKAGNLVDA 306



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 83/209 (39%), Gaps = 40/209 (19%)

Query: 360 LTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLR- 418
           L AS   +AL      H     +GF     V NCL+  Y++CG    A+ VF+ M     
Sbjct: 26  LCASAGRSALTTGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGTAHAHGVFDTMPHRDT 85

Query: 419 -----------------------------DVVSWNTIIYGYGVNGHGETALALYHKMTET 449
                                        DVVSWNT+I GY  +G    ++ L  +M+  
Sbjct: 86  VSWNTMLTAYVHAGDTDTAASLFGTMPDPDVVSWNTLISGYCQHGMFRNSVGLSMEMSRR 145

Query: 450 GEVPDSSTYLSILNACGHAGLTNDGL-VIFNQMIEENKVKPSQEHYGCVVDLLARAGCLS 508
           G   D +T   +L +CG  GL +  L V  + +  +  ++        +VD+  +   L 
Sbjct: 146 GVALDRTTLAVLLKSCG--GLDDLALGVQIHALAVKTGLETDVRAGSALVDMYGKCRSLD 203

Query: 509 DASGLAGKLLEGMGPN---IWRALLSGCV 534
           DA     +   GMG      W A ++GCV
Sbjct: 204 DAL----RFFHGMGERNSVSWGAAIAGCV 228


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  238 bits (606), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 160/577 (27%), Positives = 268/577 (46%), Gaps = 86/577 (14%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           LL+ Y KSG++  A  +FDE+P+                                   PN
Sbjct: 54  LLTAYAKSGRLARARRVFDEMPD-----------------------------------PN 78

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKL 130
            FT   +L A A           H  +V   +E  LF  +     VS NA++ GF +   
Sbjct: 79  LFTRNALLSALA-----------HSRLVP-DMER-LFASMPERDAVSYNALITGFSSTGS 125

Query: 131 FQQAVLLFN-FFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNN 189
             ++V L+    R   + P  +T+  +I    AL  RAL   +H   ++LG      V +
Sbjct: 126 PARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGS 185

Query: 190 SVLDMYSCLMDLDAAIQIFREMECK-------------------------------DVIS 218
            ++DMY+ +  +  A ++F+EME K                               D I+
Sbjct: 186 PLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSIT 245

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           WT M+          +AL +FR MR   +  D     ++++    L   + GKQ+HA + 
Sbjct: 246 WTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYIT 305

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
               +  + + ++++ MYSKC  +  + +VF ++T ++++SWTA+I GY QN C+ EA+ 
Sbjct: 306 RTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVR 365

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
            F +M+ +     D  TL S++++   LA+LE   Q H +A  +G  RY +V N L++ Y
Sbjct: 366 AFSEMQMDGIKP-DDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLY 424

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
            KCG+++ A+ +F+EM F  D VSW  ++ GY   G  +  + L+ KM   G  PD  T+
Sbjct: 425 GKCGSIEDAHRLFDEMSF-HDQVSWTALVTGYAQFGKAKETIDLFEKMLVNGLKPDGVTF 483

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
           + +L+AC  AGL   G   F+ M +++ + P  +HY C++DL +R+G   +A     ++ 
Sbjct: 484 IGVLSACSRAGLVEKGCDYFDSMQKDHDIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMP 543

Query: 519 EGMGPNIWRALLSGCVLH----VGRFQDAEALRSGSQ 551
                  W  LLS C L     +G++     L +  Q
Sbjct: 544 HSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQ 580



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 125/519 (24%), Positives = 231/519 (44%), Gaps = 59/519 (11%)

Query: 4   DP--YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           DP  +  + LLS    S  + + E LF  +PE++ VS++ +I G+S  G   +S++ +  
Sbjct: 76  DPNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRA 135

Query: 62  MML-SGLLPNSFTMVGVLVAAAGLQNLELARSIH-------------------GLMVKFG 101
           ++    + P   T+  +++ A+ L +  L  S+H                    +  K G
Sbjct: 136 LLREESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMG 195

Query: 102 LESD---LFEGLKNPYLVSCNAIVAGFINNK-------LFQ------------------- 132
           L  D   +F+ ++   +V  N ++ G +  K       LFQ                   
Sbjct: 196 LIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQ 255

Query: 133 -----QAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSV 187
                +A+ +F   R  G+  +  T  +++  C AL +    + IH    +     +V V
Sbjct: 256 NGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFV 315

Query: 188 NNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRI 247
            ++++DMYS    +  A  +FR M C+++ISWT M+  +     + +A++ F EM+   I
Sbjct: 316 GSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGI 375

Query: 248 ICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRS 307
             D   L ++IS  A L  L+ G Q H   ++ GL   + +SN+++ +Y KCG ++ +  
Sbjct: 376 KPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHR 435

Query: 308 VFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELA 367
           +F++++    VSWTA+++GY Q G A+E ++ F KM        D +T + +L+A     
Sbjct: 436 LFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLVNGLKP-DGVTFIGVLSACSRAG 494

Query: 368 ALEI-CLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTI 426
            +E  C     +  +           C+I  YS+ G    A    ++M    D   W T+
Sbjct: 495 LVEKGCDYFDSMQKDHDIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATL 554

Query: 427 IYGYGVNGHGETALALYHKMTETG-EVPDSSTYLSILNA 464
           +    + G+ E        + ET  + P S   L  ++A
Sbjct: 555 LSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHA 593



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 109/257 (42%), Gaps = 34/257 (13%)

Query: 251 TVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFN 310
           T  L +L++  A  G L R +++  ++        L   N++++  +    +     +F 
Sbjct: 48  TFLLNHLLTAYAKSGRLARARRVFDEMP----DPNLFTRNALLSALAHSRLVPDMERLFA 103

Query: 311 QITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALE 370
            + E+  VS+ A+I+G+   G    ++  +  + +E++     ITL +++  +  L+   
Sbjct: 104 SMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRA 163

Query: 371 ICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-------------GFL 417
           +   +H      GF  Y  V + L+  Y+K G +  A  VF+EM             G L
Sbjct: 164 LGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLL 223

Query: 418 -----------------RDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
                            RD ++W T++ G   NG    AL ++ +M   G   D  T+ S
Sbjct: 224 RCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGS 283

Query: 461 ILNACGHAGLTNDGLVI 477
           IL ACG    + +G  I
Sbjct: 284 ILTACGALAASEEGKQI 300


>gi|147769567|emb|CAN65709.1| hypothetical protein VITISV_020733 [Vitis vinifera]
          Length = 609

 Score =  238 bits (606), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 160/526 (30%), Positives = 260/526 (49%), Gaps = 26/526 (4%)

Query: 35  NVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIH 94
            V  W+  I      G+  K++  F  M  +GL PN+ T   V  A + L NL+ ++ +H
Sbjct: 18  TVAQWNSSITESVNQGYAHKALLLFRQMKQNGLEPNNLTFPSVAKACSKLLNLKYSQIVH 77

Query: 95  GLMVKFGLESDLF----------------------EGLKNPYLVSCNAIVAGFINNKLFQ 132
             +VK   ++DLF                        +    + S N+++ GF       
Sbjct: 78  THVVKSRFQADLFVQTSVVDMYVKCSQLGFAYNLFSRMPXRDVASWNSMIXGFAQLGFVD 137

Query: 133 QAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVL 192
           + V LF      G+  ++VT++ +    ++L    + E IH   IK+G+  DVSV+N+ +
Sbjct: 138 RVVSLFCEMGIEGIRADSVTVIGLTHSALSLKDLKMLESIHSFGIKIGIDTDVSVSNTWI 197

Query: 193 DMYSCLMDLDAAIQIFREME--CKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICD 250
             Y+   +   A  +F  ++   K  +SW  M+  +  FE    A+  F++M       D
Sbjct: 198 AAYAKCGEFGLAETVFDGIDKGLKTXVSWNSMIAGYAHFEQCSKAVGFFKKMLXGGFRAD 257

Query: 251 TVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFN 310
              +L+L+S       L  GK +HA  +  G  S++++ N++I+MYSKCGD+ S+R +F+
Sbjct: 258 LSTILSLLSSCVQPEVLFHGKLIHAHGIQVGCDSDIQVINTLISMYSKCGDIGSARYLFD 317

Query: 311 QITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALE 370
            +  K+ VSWTA+I+G  + G   EA+  F  M +   +  D +T++S+++  G+  ALE
Sbjct: 318 NMLGKTRVSWTAMIAGXAEKGDLDEAMTLFSAM-EAVGEKPDLVTIISLMSGCGQTGALE 376

Query: 371 ICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGY 430
           +   +   A   G      V N LI  Y+KCG++D A  +F  M   + +VSW T+I G 
Sbjct: 377 LGKWIDTYATANGLKDNLMVCNALIDVYAKCGSMDNARELFYTMP-EKSLVSWTTLIAGC 435

Query: 431 GVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPS 490
            +NG  + AL L+ +M E G  P+  T+L++L AC HAG    G   FN M +  K+ P 
Sbjct: 436 ALNGEFKEALGLFFQMVELGLKPNHITFLAVLQACNHAGFLEKGWECFNLMTKVYKINPG 495

Query: 491 QEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
            +HY C+ DLL R G L +A      +       IW  LLS C +H
Sbjct: 496 LDHYSCMADLLGRKGRLKEAFEFIQNMPFKPDVGIWSVLLSACKIH 541



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 138/525 (26%), Positives = 246/525 (46%), Gaps = 42/525 (8%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + ++  Y K  ++  A NLF  +P ++V SW+ +I G++  GF ++ +  F  M 
Sbjct: 88  DLFVQTSVVDMYVKCSQLGFAYNLFSRMPXRDVASWNSMIXGFAQLGFVDRVVSLFCEMG 147

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------- 106
           + G+  +S T++G+  +A  L++L++  SIH   +K G+++D+                 
Sbjct: 148 IEGIRADSVTVIGLTHSALSLKDLKMLESIHSFGIKIGIDTDVSVSNTWIAAYAKCGEFG 207

Query: 107 -----FEGLKN--PYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                F+G+       VS N+++AG+ + +   +AV  F      G   +  T+L+++  
Sbjct: 208 LAETVFDGIDKGLKTXVSWNSMIAGYAHFEQCSKAVGFFKKMLXGGFRADLSTILSLLSS 267

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           CV        +LIH   I++G   D+ V N+++ MYS   D+ +A  +F  M  K  +SW
Sbjct: 268 CVQPEVLFHGKLIHAHGIQVGCDSDIQVINTLISMYSKCGDIGSARYLFDNMLGKTRVSW 327

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           T M+    +     +A+ +F  M       D V +++L+S     G L+ GK +      
Sbjct: 328 TAMIAGXAEKGDLDEAMTLFSAMEAVGEKPDLVTIISLMSGCGQTGALELGKWIDTYATA 387

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            GL+  L + N++I +Y+KCG +D++R +F  + EKSLVSWT +I+G   NG  +EAL  
Sbjct: 388 NGLKDNLMVCNALIDVYAKCGSMDNARELFYTMPEKSLVSWTTLIAGCALNGEFKEALGL 447

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEI---CLQLHGIAFE--AGFPRYRSVQNCL 394
           F +M  E     + IT +++L A      LE    C  L    ++   G   Y    +C+
Sbjct: 448 FFQMV-ELGLKPNHITFLAVLQACNHAGFLEKGWECFNLMTKVYKINPGLDHY----SCM 502

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGH---GETALALYHKMTETGE 451
                + G +  A+   + M F  DV  W+ ++    ++ +   GE       ++     
Sbjct: 503 ADLLGRKGRLKEAFEFIQNMPFKPDVGIWSVLLSACKIHQNVVIGECVAYHLFELEPQTA 562

Query: 452 VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGC 496
           VP    Y+ + N    AG   D +     M++ NK   S     C
Sbjct: 563 VP----YVQMANIYASAG-KWDRVAAIRTMMKCNKAMKSSGEKPC 602



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 129/445 (28%), Positives = 216/445 (48%), Gaps = 12/445 (2%)

Query: 107 FEGLKNPYLVS-CNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           F    N + V+  N+ +   +N     +A+LLF   + +GL PN +T  +V + C  L +
Sbjct: 10  FNRFSNLWTVAQWNSSITESVNQGYAHKALLLFRQMKQNGLEPNNLTFPSVAKACSKLLN 69

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
               +++H   +K     D+ V  SV+DMY     L  A  +F  M  +DV SW  M+  
Sbjct: 70  LKYSQIVHTHVVKSRFQADLFVQTSVVDMYVKCSQLGFAYNLFSRMPXRDVASWNSMIXG 129

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           F    +    + +F EM    I  D+V ++ L      L DLK  + +H+  +  G+ ++
Sbjct: 130 FAQLGFVDRVVSLFCEMGIEGIRADSVTVIGLTHSALSLKDLKMLESIHSFGIKIGIDTD 189

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITE--KSLVSWTAIISGYVQNGCAREALNQFIKM 343
           + +SN+ IA Y+KCG+   + +VF+ I +  K+ VSW ++I+GY       +A+  F KM
Sbjct: 190 VSVSNTWIAAYAKCGEFGLAETVFDGIDKGLKTXVSWNSMIAGYAHFEQCSKAVGFFKKM 249

Query: 344 RQE--KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
                + D    ++L+S       L   ++ +  HGI  + G      V N LIS YSKC
Sbjct: 250 LXGGFRADLSTILSLLSSCVQPEVLFHGKL-IHAHGI--QVGCDSDIQVINTLISMYSKC 306

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G++  A  +F+ M   +  VSW  +I G    G  + A+ L+  M   GE PD  T +S+
Sbjct: 307 GDIGSARYLFDNM-LGKTRVSWTAMIAGXAEKGDLDEAMTLFSAMEAVGEKPDLVTIISL 365

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           ++ CG  G    G  I +     N +K +      ++D+ A+ G + +A  L   + E  
Sbjct: 366 MSGCGQTGALELGKWI-DTYATANGLKDNLMVCNALIDVYAKCGSMDNARELFYTMPEKS 424

Query: 522 GPNIWRALLSGCVLHVGRFQDAEAL 546
             + W  L++GC L+ G F++A  L
Sbjct: 425 LVS-WTTLIAGCALN-GEFKEALGL 447


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  238 bits (606), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 173/622 (27%), Positives = 286/622 (45%), Gaps = 123/622 (19%)

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF-------------- 107
           M+ +G   + FT+  VL A   L +     + HGL+   G ES++F              
Sbjct: 1   MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGS 60

Query: 108 -------------EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFF------RGSGLVP 148
                         G+ +  ++S N+IV+  + +     A+ LF+        + +    
Sbjct: 61  LEEASMIFDEITQRGIDD--VISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERS 118

Query: 149 NAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIF 208
           + ++++ ++  C +L +    + +HG  I+ G  LDV V N+++D Y+    ++ A+++F
Sbjct: 119 DIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVF 178

Query: 209 REMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICD------------------ 250
             ME KDV+SW  M+  +        A ++F+ MRK  I  D                  
Sbjct: 179 NMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSH 238

Query: 251 -----------------TVALLNLISVNAILGDLKRGKQLHAQVV----------LGGLQ 283
                             V +++++S  A LG   +G ++HA  +           GG  
Sbjct: 239 EALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGED 298

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQIT--EKSLVSWTAIISGYVQNGCAREALNQFI 341
            +L + N++I MYSKC    ++RS+F+ I   E+++V+WT +I G+ Q G + +AL  F+
Sbjct: 299 EDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFV 358

Query: 342 KMRQEKTD-SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS----VQNCLIS 396
           +M  E    + ++ T+  IL A   LAA+ I  Q+H  A+     +Y S    V NCLI+
Sbjct: 359 EMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIH--AYVLRHHQYDSSAYFVANCLIN 416

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
            YSKCG+VD A  VF+ M   +  +SW +++ GYG++G G  AL ++ KM + G VPD  
Sbjct: 417 MYSKCGDVDTARHVFDSMS-QKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDI 475

Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK 516
           T+L +L AC H G+ + GL  F+ M  +  + P  EHY   +DLLAR G L  A      
Sbjct: 476 TFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKD 535

Query: 517 LLEGMGPNIWRALLSGCVLH---------------------------------VGRFQDA 543
           +       +W ALLS C +H                                  GR++D 
Sbjct: 536 MPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDV 595

Query: 544 EALRSGSQKKGIIKIPGISFLN 565
             +R   +K GI K PG S++ 
Sbjct: 596 ARIRHLMKKSGIKKRPGCSWVQ 617



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 144/546 (26%), Positives = 250/546 (45%), Gaps = 85/546 (15%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEK---NVVSWSIVIHGYSINGFHEKSMKAFSHMML--- 64
           L++ Y + G ++EA  +FDEI ++   +V+SW+ ++  +  +     ++  FS M L   
Sbjct: 51  LVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVH 110

Query: 65  ---SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPY----- 114
              +    +  ++V +L A   L+ +   + +HG  ++ G   D+F G  L + Y     
Sbjct: 111 EKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGL 170

Query: 115 ---------------LVSCNAIVAGFINNKLFQQAVLLF--------------------- 138
                          +VS NA+VAG+  +  F+ A  LF                     
Sbjct: 171 MENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAG 230

Query: 139 -----------NFFRG---SGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLIL- 183
                      N FR    SG +PN VT+++V+  C +LG+ +    IH  ++K  L+  
Sbjct: 231 YSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTL 290

Query: 184 ---------DVSVNNSVLDMYSCLMDLDAAIQIFRE--MECKDVISWTRMMGLFVDFEYA 232
                    D+ V N+++DMYS      AA  IF +  +E ++V++WT M+G    +  +
Sbjct: 291 DNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDS 350

Query: 233 GDALKIFREM--RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL--QSELRL 288
            DALK+F EM      +  +   +  ++   A L  ++ GKQ+HA V+       S   +
Sbjct: 351 NDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFV 410

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
           +N +I MYSKCGD+D++R VF+ +++KS +SWT++++GY  +G   EAL+ F KMR+   
Sbjct: 411 ANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGF 470

Query: 349 DSVDSITLVSILTASGELAALEICLQ-LHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
              D IT + +L A      ++  L     ++ + G           I   ++ G +D A
Sbjct: 471 -VPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKA 529

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
           +   ++M      V W  ++    V+ + E A    +K+ E     D S Y  I N    
Sbjct: 530 WKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGS-YTLISNIYAT 588

Query: 468 AGLTND 473
           AG   D
Sbjct: 589 AGRWKD 594



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 118/496 (23%), Positives = 216/496 (43%), Gaps = 77/496 (15%)

Query: 152 TMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM 211
           T+  V++ C  L S       HGL    G   +V + N+++ MYS    L+ A  IF E+
Sbjct: 12  TLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEI 71

Query: 212 ECK---DVISWTRMMGLFVDFEYAGDALKIFREM------RKSRIICDTVALLNLISVNA 262
             +   DVISW  ++   V    A  AL +F +M      + +    D ++++N++    
Sbjct: 72  TQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACG 131

Query: 263 ILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTA 322
            L  + + K++H   +  G   ++ + N++I  Y+KCG ++++  VFN +  K +VSW A
Sbjct: 132 SLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNA 191

Query: 323 IISGYVQNGCAREALNQFIKMRQEKT--DSV----------------------------- 351
           +++GY Q+G  + A   F  MR+E    D V                             
Sbjct: 192 MVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSG 251

Query: 352 ---DSITLVSILTASGELAALEICLQLHGIAFE----------AGFPRYRSVQNCLISSY 398
              + +T++S+L+A   L A    +++H  + +           G      V N LI  Y
Sbjct: 252 SLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMY 311

Query: 399 SKCGNVDLAYIVFEEMGF-LRDVVSWNTIIYGYGVNGHGETALALYHKMTET--GEVPDS 455
           SKC +   A  +F+++    R+VV+W  +I G+   G    AL L+ +M     G  P++
Sbjct: 312 SKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNA 371

Query: 456 STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYG-CVVDLLARAGCLSDASGLA 514
            T   IL AC H      G  I   ++  ++   S      C++++ ++ G +  A  + 
Sbjct: 372 YTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVF 431

Query: 515 GKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIK----------------- 557
             + +    + W ++++G  +H GR  +A  +    +K G +                  
Sbjct: 432 DSMSQKSAIS-WTSMMTGYGMH-GRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGM 489

Query: 558 -IPGISFLNSTSRDFG 572
              G+S+ +S S D+G
Sbjct: 490 VDQGLSYFDSMSADYG 505



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 61/271 (22%), Positives = 120/271 (44%), Gaps = 37/271 (13%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIP--EKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           YN+  L+  Y K    K A ++FD+IP  E+NVV+W+++I G++  G    ++K F  M+
Sbjct: 304 YNA--LIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMI 361

Query: 64  LS--GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKF--------------------- 100
               G+ PN++T+  +L+A A L  + + + IH  +++                      
Sbjct: 362 SEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKC 421

Query: 101 ---GLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
                   +F+ +     +S  +++ G+  +    +A+ +F+  R +G VP+ +T L V+
Sbjct: 422 GDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVL 481

Query: 158 RGCVALG--SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKD 215
             C   G   + L      ++   GL          +D+ +    LD A +  ++M  + 
Sbjct: 482 YACSHCGMVDQGL-SYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEP 540

Query: 216 V-ISWTRMMG---LFVDFEYAGDALKIFREM 242
             + W  ++    +  + E A  AL    EM
Sbjct: 541 TAVVWVALLSACRVHSNVELAEHALNKLVEM 571


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  238 bits (606), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 137/425 (32%), Positives = 232/425 (54%), Gaps = 7/425 (1%)

Query: 115 LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHG 174
           LVS  A+++G   N  F +A+  F   R  G VP      + IR C +LGS  + + +H 
Sbjct: 6   LVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHC 65

Query: 175 LTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGD 234
           L +K G+  ++ V +++ DMYS    +  A ++F EM CKD +SWT M+  +       +
Sbjct: 66  LALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEE 125

Query: 235 ALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIA 294
           AL  F++M    +  D   L + +     L   K G+ +H+ VV  G +S++ + N++  
Sbjct: 126 ALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTD 185

Query: 295 MYSKCGDLDSSRSVFNQITE-KSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDS 353
           MYSK GD++S+ +VF   +E +++VS+T +I GYV+     + L+ F+++R++  +  + 
Sbjct: 186 MYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEP-NE 244

Query: 354 ITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEE 413
            T  S++ A    AALE   QLH    +  F     V + L+  Y KCG ++ A   F+E
Sbjct: 245 FTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDE 304

Query: 414 MGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTND 473
           +G   + ++WN+++  +G +G G+ A+ ++ +M + G  P++ T++S+L  C HAGL  +
Sbjct: 305 IGDPTE-IAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEE 363

Query: 474 GLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI--WRALLS 531
           GL  F  M +   V P +EHY CV+DLL RAG L +A     ++     PN   W + L 
Sbjct: 364 GLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRM--PFEPNAFGWCSFLG 421

Query: 532 GCVLH 536
            C +H
Sbjct: 422 ACRIH 426



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 110/431 (25%), Positives = 211/431 (48%), Gaps = 25/431 (5%)

Query: 31  IPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELA 90
           +P++N+VSW+ +I G S N    ++++ F  M + G +P  F     + A A L ++E+ 
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60

Query: 91  RSIHGLMVKFGLESDLFEG--LKNPY--------------------LVSCNAIVAGFINN 128
           + +H L +KFG+ S+LF G  L++ Y                     VS  A++ G+   
Sbjct: 61  KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKI 120

Query: 129 KLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVN 188
             F++A+L F       +  +   + + +  C AL +      +H   +KLG   D+ V 
Sbjct: 121 GEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVG 180

Query: 189 NSVLDMYSCLMDLDAAIQIFR-EMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRI 247
           N++ DMYS   D+++A  +F  + EC++V+S+T ++  +V+ E     L +F E+R+  I
Sbjct: 181 NALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGI 240

Query: 248 ICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRS 307
             +     +LI   A    L++G QLHAQV+      +  +S+ ++ MY KCG L+ +  
Sbjct: 241 EPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQ 300

Query: 308 VFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELA 367
            F++I + + ++W +++S + Q+G  ++A+  F +M  ++    ++IT +S+LT      
Sbjct: 301 AFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERM-VDRGVKPNAITFISLLTGCSHAG 359

Query: 368 ALEICLQ-LHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTI 426
            +E  L   + +    G        +C+I    + G +  A      M F  +   W + 
Sbjct: 360 LVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSF 419

Query: 427 IYGYGVNGHGE 437
           +    ++G  E
Sbjct: 420 LGACRIHGDKE 430



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/302 (30%), Positives = 148/302 (49%), Gaps = 6/302 (1%)

Query: 211 MECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG 270
           M  ++++SWT M+          +A++ F  MR    +    A  + I   A LG ++ G
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60

Query: 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
           KQ+H   +  G+ SEL + +++  MYSKCG +  +  VF ++  K  VSWTA+I GY + 
Sbjct: 61  KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKI 120

Query: 331 GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV 390
           G   EAL  F KM  E+  ++D   L S L A G L A +    +H    + GF     V
Sbjct: 121 GEFEEALLAFKKMIDEEV-TIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFV 179

Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
            N L   YSK G+++ A  VF      R+VVS+  +I GY      E  L+++ ++   G
Sbjct: 180 GNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQG 239

Query: 451 EVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY--GCVVDLLARAGCLS 508
             P+  T+ S++ AC +      G  +  Q++   K+   ++ +    +VD+  + G L 
Sbjct: 240 IEPNEFTFSSLIKACANQAALEQGTQLHAQVM---KINFDEDPFVSSILVDMYGKCGLLE 296

Query: 509 DA 510
            A
Sbjct: 297 QA 298



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 155/342 (45%), Gaps = 27/342 (7%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           S L   Y K G + +A  +F+E+P K+ VSW+ +I GYS  G  E+++ AF  M+   + 
Sbjct: 80  SNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVT 139

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPY------------ 114
            +   +   L A   L+  +  RS+H  +VK G ESD+F G  L + Y            
Sbjct: 140 IDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNV 199

Query: 115 ---------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
                    +VS   ++ G++  +  ++ + +F   R  G+ PN  T  ++I+ C    +
Sbjct: 200 FGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAA 259

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
                 +H   +K+    D  V++ ++DMY     L+ AIQ F E+     I+W  ++ +
Sbjct: 260 LEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSV 319

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV--VLGGLQ 283
           F       DA+KIF  M    +  + +  ++L++  +  G ++ G      +    G + 
Sbjct: 320 FGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVP 379

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAII 324
            E   S  +I +  + G L  ++   N++  E +   W + +
Sbjct: 380 GEEHYS-CVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFL 420



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 13/113 (11%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           DP+ SS L+  Y K G +++A   FDEI +   ++W+ ++  +  +G  + ++K F  M+
Sbjct: 278 DPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMV 337

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLV 116
             G+ PN+ T + +L   +           H  +V+ GL  D F  +   Y V
Sbjct: 338 DRGVKPNAITFISLLTGCS-----------HAGLVEEGL--DYFYSMDKTYGV 377


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  237 bits (605), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 164/574 (28%), Positives = 275/574 (47%), Gaps = 91/574 (15%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P    ++ + +LS Y K G +      FD++P+++ VSW+ +I GY   G + K+++   
Sbjct: 76  PLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMG 135

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--LFEGLKNPYLVSC 118
            M+  G+ P  FT+  VL + A  + +E  + +H  +VK GL  +  +   L N Y    
Sbjct: 136 DMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCG 195

Query: 119 NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIK 178
           + ++A F+ +++                         V+R                    
Sbjct: 196 DPMMAKFVFDRM-------------------------VVR-------------------- 210

Query: 179 LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKI 238
                D+S  N+++ ++  +  +D A+  F +M  +D+++W  M+  F    Y   AL I
Sbjct: 211 -----DISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDI 265

Query: 239 FREM-RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYS 297
           F +M R S +  D   L +++S  A L  L  GKQ+H+ +V  G      + N++I+MYS
Sbjct: 266 FSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYS 325

Query: 298 KC---------------------------------GDLDSSRSVFNQITEKSLVSWTAII 324
           +C                                 GD++ ++++F  + ++ +V+WTA+I
Sbjct: 326 RCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMI 385

Query: 325 SGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGF 384
            GY Q+G   EA+N F  M        +S TL ++L+ +  LA+L    Q+HG A ++G 
Sbjct: 386 VGYEQHGSYGEAINLFRSM-VGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGE 444

Query: 385 PRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH 444
               SV N LI+ Y+K GN+  A   F+ +   RD VSW ++I     +GH E AL L+ 
Sbjct: 445 IYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFE 504

Query: 445 KMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARA 504
            M   G  PD  TY+ + +AC HAGL N G   F+ M + +K+ P+  HY C+VDL  RA
Sbjct: 505 TMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRA 564

Query: 505 GCLSDASGLAGKLLEGMGPNI--WRALLSGCVLH 536
           G L +A     K+   + P++  W +LLS C +H
Sbjct: 565 GLLQEAQEFIEKM--PIEPDVVTWGSLLSACRVH 596



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 116/466 (24%), Positives = 197/466 (42%), Gaps = 103/466 (22%)

Query: 148 PNAVTMLTVIRGCVAL--------GSRALCELIHGLTIKLGLILDVSVN----------- 188
           P  +++ T++  C  L          R   +L+H   IK GL+  V +            
Sbjct: 4   PVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTG 63

Query: 189 --------------------NSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
                               N+VL  YS   D+D+  + F ++  +D +SWT M+  + +
Sbjct: 64  YALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKN 123

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
                 A+++  +M K  I      L N+++  A    ++ GK++H+ +V  GL+  + +
Sbjct: 124 IGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSV 183

Query: 289 SNSIIAMYSKCGD-------------------------------LDSSRSVFNQITEKSL 317
           SNS++ MY+KCGD                               +D + + F Q+ E+ +
Sbjct: 184 SNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDI 243

Query: 318 VSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHG 377
           V+W ++ISG+ Q G    AL+ F KM ++   S D  TL S+L+A   L  L I  Q+H 
Sbjct: 244 VTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHS 303

Query: 378 IAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMG---------------------- 415
                GF     V N LIS YS+CG V+ A  + E+ G                      
Sbjct: 304 HIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDM 363

Query: 416 ------FL----RDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
                 F+    RDVV+W  +I GY  +G    A+ L+  M   G+ P+S T  ++L+  
Sbjct: 364 NQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVA 423

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDAS 511
                 + G  I    ++  ++  S      ++ + A+AG ++ AS
Sbjct: 424 SSLASLSHGKQIHGSAVKSGEIY-SVSVSNALITMYAKAGNITSAS 468


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  237 bits (605), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 161/552 (29%), Positives = 282/552 (51%), Gaps = 26/552 (4%)

Query: 21  IKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL-PNSFTMVGVL- 78
           I +A  LF  IP  ++  ++++I  +S+N     ++  ++H+  S  L P++FT   V+ 
Sbjct: 58  IDQASLLFSTIPNPDLFLYNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVIS 117

Query: 79  ---------------VAAAGLQNLELARSIHGLMVKF---GLESDLFEGLKNPYLVSCNA 120
                          + A    +L +  +I     KF        +F+G+     V  N 
Sbjct: 118 GASSLGLGLLLHAHSIVAGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNT 177

Query: 121 IVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLG 180
           +V+G + N  F +A+L+F      G+  ++ T+  V+ G   L   AL   I  L +K+G
Sbjct: 178 MVSGLVKNSCFDEAILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVG 237

Query: 181 LILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFR 240
                 V   +  +YS   +++ A  +F ++   D++S+  M+  +        ++++F+
Sbjct: 238 FHSHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFK 297

Query: 241 EMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCG 300
           E+  S    ++ +++ LI V    G L   + +H      G+ S   +S ++  +YS+  
Sbjct: 298 ELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLN 357

Query: 301 DLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSIL 360
           +++S+R +F++ +EKSL SW A+ISGY QNG   +A++ F +M++ +    + +T+ SIL
Sbjct: 358 EIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRP-NPVTVTSIL 416

Query: 361 TASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDV 420
           +A  +L AL +   +H +     F     V   LI  Y+KCG++  A  +F  M   ++ 
Sbjct: 417 SACAQLGALSLGKWVHDLINRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMP-EKNA 475

Query: 421 VSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQ 480
           V+WN +I GYG++G+G  AL L+++M  +   P   T+LS+L AC HAGL  +G  IF  
Sbjct: 476 VTWNAMISGYGLHGYGHEALNLFNEMLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRS 535

Query: 481 MIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRF 540
           M+ ++  +P  EHY C+VDLL RAG L  A     K+    GP +W ALL  C++H    
Sbjct: 536 MVHDHGFEPLPEHYACMVDLLGRAGNLDKALDFIRKMPVEPGPPVWGALLGACMIH---- 591

Query: 541 QDAEALRSGSQK 552
           +DA   R  S K
Sbjct: 592 KDANLARLASDK 603



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 119/447 (26%), Positives = 214/447 (47%), Gaps = 24/447 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  S +++ YFK  ++  A  +FD + E++ V W+ ++ G   N   ++++  F  M+
Sbjct: 140 DLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMV 199

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
             G+  +S T+  VL   A LQ+L L   I  L +K G  S                   
Sbjct: 200 KGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIE 259

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               LF  +  P LVS NA+++G+  N   + +V LF     SG   N+ +++ +I    
Sbjct: 260 TARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPVFF 319

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
             G   L   IHG   K G++ + SV+ ++  +YS L ++++A  +F E   K + SW  
Sbjct: 320 PFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNA 379

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+  +        A+ +F+EM+K  +  + V + +++S  A LG L  GK +H  +    
Sbjct: 380 MISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRES 439

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
            +S + +S ++I MY+KCG +  ++ +F+ + EK+ V+W A+ISGY  +G   EALN F 
Sbjct: 440 FESNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGLHGYGHEALNLFN 499

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQL-HGIAFEAGFPRYRSVQNCLISSYSK 400
           +M   +  S   +T +S+L A      +    ++   +  + GF        C++    +
Sbjct: 500 EMLHSRV-SPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLPEHYACMVDLLGR 558

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTII 427
            GN+D A     +M        W  ++
Sbjct: 559 AGNLDKALDFIRKMPVEPGPPVWGALL 585



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 87/196 (44%), Gaps = 4/196 (2%)

Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISG 326
           L +  Q HAQ++L GL ++L     +    S    +D +  +F+ I    L  +  +I  
Sbjct: 23  LHQLNQTHAQIILNGLHNDLVTVTKLTHKLSHLKAIDQASLLFSTIPNPDLFLYNVLIRA 82

Query: 327 YVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPR 386
           +  N     A++ +  +R+      D+ T   +++ +  L    +       +  AGF  
Sbjct: 83  FSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVISGASSLGLGLLLHA---HSIVAGFGS 139

Query: 387 YRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM 446
              V + +++ Y K   V  A  VF+ M   RD V WNT++ G   N   + A+ ++  M
Sbjct: 140 DLFVGSAIVACYFKFSRVAAARKVFDGM-LERDTVLWNTMVSGLVKNSCFDEAILIFGDM 198

Query: 447 TETGEVPDSSTYLSIL 462
            + G   DS+T  ++L
Sbjct: 199 VKGGIGFDSTTVAAVL 214


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  237 bits (605), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 158/564 (28%), Positives = 285/564 (50%), Gaps = 39/564 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPE--KNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           D   ++ LL+ Y K   +  A ++FD +P   +++VSW+ +    S NG   ++++ F  
Sbjct: 83  DAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTAMASCLSRNGAEAEALRLFGE 142

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELAR-SIHGLMVKFGL-----------------E 103
            +  GLLPN+FT+     A    +   LA  ++ GL+ K G                   
Sbjct: 143 TLEEGLLPNAFTLCAATQACFASELFHLAGGAVLGLVFKLGFWGTDVSVGCALIDMFAKN 202

Query: 104 SDL------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
            DL      F+GL    +V    ++  +  +    +AV LF     +G  P+  T+ +++
Sbjct: 203 GDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELFLDMLENGFQPDQYTLSSML 262

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMD---LDAAIQIFREMECK 214
             C  LGS  L + +H L ++LGL  D  V+  ++DMY+   +   L  A ++F  M   
Sbjct: 263 SACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSHNGQSLHNAREVFNRMPKH 322

Query: 215 DVISWTRMMGLFVDFEYAGDALKI-FREMRKSRIICDTVALLNLISVNAILGDLKRGKQL 273
           +V++WT ++  +V      + + I F +M    I  + +   +++   A LGD   G+Q+
Sbjct: 323 NVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKACANLGDQDSGRQI 382

Query: 274 HAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA 333
           H   V   L     + N++++MY++ G ++ +R  F+Q+ EK++VS++  + G  ++   
Sbjct: 383 HTHCVKSNLADLNVVGNALVSMYAESGSIEEARHAFDQLYEKNMVSFSGNLDGDGRS--- 439

Query: 334 REALNQFIKMRQEKTD-SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN 392
               N +   + E+ +  + + T  S+++A+  +  L    +LH ++ +AGF   R++ N
Sbjct: 440 ----NTYQDYQIERMELGISTFTFGSLISAAASVGMLTKGQRLHALSLKAGFGSDRAIGN 495

Query: 393 CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV 452
            L+S YS+CG +  A  VF+EM    +V+SW ++I G   +G+   AL L+H M   G  
Sbjct: 496 SLVSMYSRCGYLVDACQVFDEMND-HNVISWTSMISGLAKHGYAARALELFHDMIAAGVK 554

Query: 453 PDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASG 512
           P+  TY+++L+AC HAGL  +G   F  M + + + P  EHY C+VDLL R+G + DA  
Sbjct: 555 PNDVTYIAVLSACSHAGLVKEGKEHFRMMQKHHGLIPRMEHYACMVDLLGRSGLVEDALD 614

Query: 513 LAGKLLEGMGPNIWRALLSGCVLH 536
              ++   +   +W+ LL  C  H
Sbjct: 615 FINEMPCQVDALVWKTLLGACKTH 638



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 87/285 (30%), Positives = 141/285 (49%), Gaps = 27/285 (9%)

Query: 266 DLKRGKQLHAQVVLGG--LQSELRLSNSIIAMYSKCGDLDSSRSVFN--QITEKSLVSWT 321
           D+  G+ L   ++  G  L+++  ++NS++ +YSKC  + ++RSVF+   +  + LVSWT
Sbjct: 62  DIHLGRALQGHLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWT 121

Query: 322 AIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTA--SGELAALEICLQLHGIA 379
           A+ S   +NG   EAL  F +  +E     ++ TL +   A  + EL  L     L G+ 
Sbjct: 122 AMASCLSRNGAEAEALRLFGETLEEGLLP-NAFTLCAATQACFASELFHLAGGAVL-GLV 179

Query: 380 FEAGFPRYR-SVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGET 438
           F+ GF     SV   LI  ++K G++     VF+ + F R VV W  +I  Y  +G+ + 
Sbjct: 180 FKLGFWGTDVSVGCALIDMFAKNGDLVAMRRVFDGL-FERTVVVWTLLITRYAQSGYSDE 238

Query: 439 ALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCV- 497
           A+ L+  M E G  PD  T  S+L+AC     T  G     Q +    ++   E   CV 
Sbjct: 239 AVELFLDMLENGFQPDQYTLSSMLSAC-----TELGSFRLGQQLHSLALRLGLESDSCVS 293

Query: 498 ---VDLLARA---GCLSDASGLAGKLLEGMGPNI--WRALLSGCV 534
              VD+ A++     L +A  +  ++ +    N+  W ALLSG V
Sbjct: 294 CGLVDMYAKSHNGQSLHNAREVFNRMPK---HNVMAWTALLSGYV 335


>gi|302793632|ref|XP_002978581.1| hypothetical protein SELMODRAFT_109016 [Selaginella moellendorffii]
 gi|300153930|gb|EFJ20567.1| hypothetical protein SELMODRAFT_109016 [Selaginella moellendorffii]
          Length = 785

 Score =  237 bits (605), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 152/552 (27%), Positives = 277/552 (50%), Gaps = 31/552 (5%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L++ Y + G++++A  +F  + E+++++W+ +I  Y  +G  E+++  +  M+  G  P+
Sbjct: 202 LITMYGRCGRLEDARAIFSSMVERDIIAWNALITEYGQHGHVEEAVLLYQLMLQEGCKPD 261

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFE 108
             T V +L  + G + L   + +H  +V+ G+  +                      LFE
Sbjct: 262 KVTFVALLTMSNGPEALTEVKLVHSHIVESGVSINIALGTALVAMYSKCESLEDTRWLFE 321

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            +    ++S N +V  +  + L ++AV +  + +  G+ P+ VT + ++  C       L
Sbjct: 322 KMPQRNVISWNVMVTAYAKHGLGRKAVQITEYMQLDGVKPDNVTCVGLLNVCTGSADLKL 381

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
              +HG   +     D+ + NS+L+MY    +++ A  +F  +  ++VISWT M+  +  
Sbjct: 382 GRKVHGWIAEGRCEADLILWNSLLNMYGRCGEVEQAEMVFDGILQRNVISWTAMLTAYSR 441

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
                 AL +F  +  S +    +  L  +        L +G+ +H+  V  G   ++ L
Sbjct: 442 QNRQDMALLLFHAIHLSGVKPTCITFLEALDACVGAEALDKGRLVHSCAVQSGNDIDVSL 501

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQI-TEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
            ++++AMY +CG +  +++ F+     K+ V+W+A+I+ +VQ+G  RE L     M+Q+ 
Sbjct: 502 GSALVAMYGRCGSIRDAKACFDDTEVRKNHVTWSAMIAAFVQHGQDREGLQHLRFMQQQG 561

Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGF-PRYRSVQNCLISSYSKCGNVDL 406
            D +   T  S L+A   LA L    ++H    E  F     +V N L++ Y KCG++D 
Sbjct: 562 LD-MSPATFASTLSACSNLADLREGKRIHSYVRERRFDTEAATVTNSLVTMYGKCGSLDC 620

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           A  VFE     +D + WN II GY  +     A+ L+H+M + G  PD  T++ IL+ C 
Sbjct: 621 AREVFE-TSRRQDTICWNAIISGYAQHSQTRDAVELFHRMQQEGVAPDPVTFVCILSVCS 679

Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI- 525
           H GL ++G+  +  M+E   ++P+Q++Y CV+DLL RAG L +A      L  G  P I 
Sbjct: 680 HGGLLDEGVYAYASMVELG-LEPTQDNYACVIDLLGRAGKLQEAEEFIQSL--GTRPAIE 736

Query: 526 -WRALLSGCVLH 536
              +LLS C  H
Sbjct: 737 TLTSLLSSCKSH 748



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 138/583 (23%), Positives = 275/583 (47%), Gaps = 32/583 (5%)

Query: 3   IDPYNSSKL--LSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           + P N + L  L+ Y   G + +A+ +FD +P +NV++W+ +I  +++    E++ K F 
Sbjct: 92  VKPDNITLLAALTMYGSCGSVDDAKRVFDAMPARNVITWTAMIGAHAVTSL-EQAFKVFR 150

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIH----------------GLMVKFG--- 101
            M L G   N  T V ++ A +  + LE+   +H                 L+  +G   
Sbjct: 151 LMELEGFKSNFVTYVTLVQACSKPEFLEVGIILHMRSVESSSAMETPLCNALITMYGRCG 210

Query: 102 -LESD--LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
            LE    +F  +    +++ NA++  +  +   ++AVLL+      G  P+ VT + ++ 
Sbjct: 211 RLEDARAIFSSMVERDIIAWNALITEYGQHGHVEEAVLLYQLMLQEGCKPDKVTFVALLT 270

Query: 159 GCVALGSRALCE--LIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
             ++ G  AL E  L+H   ++ G+ +++++  +++ MYS    L+    +F +M  ++V
Sbjct: 271 --MSNGPEALTEVKLVHSHIVESGVSINIALGTALVAMYSKCESLEDTRWLFEKMPQRNV 328

Query: 217 ISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQ 276
           ISW  M+  +        A++I   M+   +  D V  + L++V     DLK G+++H  
Sbjct: 329 ISWNVMVTAYAKHGLGRKAVQITEYMQLDGVKPDNVTCVGLLNVCTGSADLKLGRKVHGW 388

Query: 277 VVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
           +  G  +++L L NS++ MY +CG+++ +  VF+ I +++++SWTA+++ Y +      A
Sbjct: 389 IAEGRCEADLILWNSLLNMYGRCGEVEQAEMVFDGILQRNVISWTAMLTAYSRQNRQDMA 448

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
           L  F  +          IT +  L A     AL+    +H  A ++G     S+ + L++
Sbjct: 449 LLLFHAIHLSGVKPT-CITFLEALDACVGAEALDKGRLVHSCAVQSGNDIDVSLGSALVA 507

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
            Y +CG++  A   F++    ++ V+W+ +I  +  +G     L     M + G     +
Sbjct: 508 MYGRCGSIRDAKACFDDTEVRKNHVTWSAMIAAFVQHGQDREGLQHLRFMQQQGLDMSPA 567

Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK 516
           T+ S L+AC +     +G  I + + E      +      +V +  + G L D +    +
Sbjct: 568 TFASTLSACSNLADLREGKRIHSYVRERRFDTEAATVTNSLVTMYGKCGSL-DCAREVFE 626

Query: 517 LLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIP 559
                    W A++SG   H  + +DA  L    Q++G+   P
Sbjct: 627 TSRRQDTICWNAIISGYAQH-SQTRDAVELFHRMQQEGVAPDP 668



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 126/556 (22%), Positives = 266/556 (47%), Gaps = 30/556 (5%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+  Y K   + +A   F+ +  KNV +W+ +I   + +  H  ++     M+L G+ P+
Sbjct: 36  LIHTYGKCHSLDDAWETFERMSYKNVYTWTAIIGVCAQHHCHSLAIILLRQMLLEGVKPD 95

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKL 130
           + T++  L       +++ A+ +             F+ +    +++  A++       L
Sbjct: 96  NITLLAALTMYGSCGSVDDAKRV-------------FDAMPARNVITWTAMIGAHAVTSL 142

Query: 131 FQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNS 190
            +QA  +F      G   N VT +T+++ C       +  ++H  +++    ++  + N+
Sbjct: 143 -EQAFKVFRLMELEGFKSNFVTYVTLVQACSKPEFLEVGIILHMRSVESSSAMETPLCNA 201

Query: 191 VLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICD 250
           ++ MY     L+ A  IF  M  +D+I+W  ++  +    +  +A+ +++ M +     D
Sbjct: 202 LITMYGRCGRLEDARAIFSSMVERDIIAWNALITEYGQHGHVEEAVLLYQLMLQEGCKPD 261

Query: 251 TVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFN 310
            V  + L++++     L   K +H+ +V  G+   + L  +++AMYSKC  L+ +R +F 
Sbjct: 262 KVTFVALLTMSNGPEALTEVKLVHSHIVESGVSINIALGTALVAMYSKCESLEDTRWLFE 321

Query: 311 QITEKSLVSWTAIISGYVQNGCAREA--LNQFIKMRQEKTDSVDSITLVSILTASGELAA 368
           ++ +++++SW  +++ Y ++G  R+A  + +++++   K D+V  + L+++ T S   A 
Sbjct: 322 KMPQRNVISWNVMVTAYAKHGLGRKAVQITEYMQLDGVKPDNVTCVGLLNVCTGS---AD 378

Query: 369 LEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFL-RDVVSWNTII 427
           L++  ++HG   E        + N L++ Y +CG V+ A +VF+  G L R+V+SW  ++
Sbjct: 379 LKLGRKVHGWIAEGRCEADLILWNSLLNMYGRCGEVEQAEMVFD--GILQRNVISWTAML 436

Query: 428 YGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEE-NK 486
             Y      + AL L+H +  +G  P   T+L  L+AC  A   + G ++ +  ++  N 
Sbjct: 437 TAYSRQNRQDMALLLFHAIHLSGVKPTCITFLEALDACVGAEALDKGRLVHSCAVQSGND 496

Query: 487 VKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEAL 546
           +  S      +V +  R G + DA               W A+++  V H    QD E L
Sbjct: 497 IDVSLG--SALVAMYGRCGSIRDAKACFDDTEVRKNHVTWSAMIAAFVQH---GQDREGL 551

Query: 547 RSGS--QKKGIIKIPG 560
           +     Q++G+   P 
Sbjct: 552 QHLRFMQQQGLDMSPA 567



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 145/322 (45%), Gaps = 39/322 (12%)

Query: 156 VIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKD 215
           +++ C  + +  +   +H   ++  L   V + N ++  Y     LD A + F  M  K+
Sbjct: 1   LLQACPKVKALDVARRLHSQIVRASLDNRVFLGNHLIHTYGKCHSLDDAWETFERMSYKN 60

Query: 216 VISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
           V +WT ++G+         A+ + R+M    +  D + LL                    
Sbjct: 61  VYTWTAIIGVCAQHHCHSLAIILLRQMLLEGVKPDNITLL-------------------- 100

Query: 276 QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
                          + + MY  CG +D ++ VF+ +  +++++WTA+I  +       +
Sbjct: 101 ---------------AALTMYGSCGSVDDAKRVFDAMPARNVITWTAMIGAHAVTS-LEQ 144

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLI 395
           A   F  M  E   S + +T V+++ A  +   LE+ + LH  + E+       + N LI
Sbjct: 145 AFKVFRLMELEGFKS-NFVTYVTLVQACSKPEFLEVGIILHMRSVESSSAMETPLCNALI 203

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
           + Y +CG ++ A  +F  M   RD+++WN +I  YG +GH E A+ LY  M + G  PD 
Sbjct: 204 TMYGRCGRLEDARAIFSSM-VERDIIAWNALITEYGQHGHVEEAVLLYQLMLQEGCKPDK 262

Query: 456 STYLSILN-ACGHAGLTNDGLV 476
            T++++L  + G   LT   LV
Sbjct: 263 VTFVALLTMSNGPEALTEVKLV 284



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 117/267 (43%), Gaps = 44/267 (16%)

Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISG 326
           L   ++LH+Q+V   L + + L N +I  Y KC  LD +   F +++ K++ +WTAII  
Sbjct: 11  LDVARRLHSQIVRASLDNRVFLGNHLIHTYGKCHSLDDAWETFERMSYKNVYTWTAIIGV 70

Query: 327 YVQNGCAREALNQFIKMRQEKTDSV--DSITLVSILTASGELAALEICLQLHGIAFEAGF 384
             Q+ C   A+   I +RQ   + V  D+ITL++ LT                       
Sbjct: 71  CAQHHCHSLAI---ILLRQMLLEGVKPDNITLLAALTM---------------------- 105

Query: 385 PRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH 444
                        Y  CG+VD A  VF+ M   R+V++W  +I  + V    E A  ++ 
Sbjct: 106 -------------YGSCGSVDDAKRVFDAMP-ARNVITWTAMIGAHAVTSL-EQAFKVFR 150

Query: 445 KMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARA 504
            M   G   +  TY++++ AC        G+++  + +E +    +      ++ +  R 
Sbjct: 151 LMELEGFKSNFVTYVTLVQACSKPEFLEVGIILHMRSVESSSAMET-PLCNALITMYGRC 209

Query: 505 GCLSDASGLAGKLLEGMGPNIWRALLS 531
           G L DA  +   ++E      W AL++
Sbjct: 210 GRLEDARAIFSSMVE-RDIIAWNALIT 235



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 63/130 (48%), Gaps = 3/130 (2%)

Query: 359 ILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLR 418
           +L A  ++ AL++  +LH     A       + N LI +Y KC ++D A+  FE M + +
Sbjct: 1   LLQACPKVKALDVARRLHSQIVRASLDNRVFLGNHLIHTYGKCHSLDDAWETFERMSY-K 59

Query: 419 DVVSWNTIIYGYGVNGHGET-ALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVI 477
           +V +W  II G     H  + A+ L  +M   G  PD+ T L+ L   G  G  +D   +
Sbjct: 60  NVYTWTAII-GVCAQHHCHSLAIILLRQMLLEGVKPDNITLLAALTMYGSCGSVDDAKRV 118

Query: 478 FNQMIEENKV 487
           F+ M   N +
Sbjct: 119 FDAMPARNVI 128



 Score = 42.7 bits (99), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 23/96 (23%), Positives = 47/96 (48%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ L++ Y K G +  A  +F+    ++ + W+ +I GY+ +     +++ F  M   G+
Sbjct: 605 TNSLVTMYGKCGSLDCAREVFETSRRQDTICWNAIISGYAQHSQTRDAVELFHRMQQEGV 664

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE 103
            P+  T V +L   +    L+     +  MV+ GLE
Sbjct: 665 APDPVTFVCILSVCSHGGLLDEGVYAYASMVELGLE 700


>gi|125555089|gb|EAZ00695.1| hypothetical protein OsI_22717 [Oryza sativa Indica Group]
          Length = 992

 Score =  237 bits (605), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 170/616 (27%), Positives = 291/616 (47%), Gaps = 64/616 (10%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           S L+S Y K G +  A  LF  + EK+ + W+ +I GY +N      M +   M + G+ 
Sbjct: 383 SALVSMYSKLGDLDSAVFLFSSVTEKSQLLWNSLISGYLVNNKWNMVMGSVRRMQIEGVD 442

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE----------------------SDL 106
           P++ T++ V+      ++L + +SIH   V+  LE                        L
Sbjct: 443 PDALTVISVISKCRHTEDLHVGKSIHAYAVRSRLELNESVMNALLAMYADCGQLSICCKL 502

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           F  ++   L+S N I++GF  N      +  F   R + +  + VT++ +I    A+   
Sbjct: 503 FHTMEVRTLISWNTIISGFAENGDSVACLRFFCQMRLADMQFDLVTLIALISSLSAIEDI 562

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
            + E +H L I+ G  LDVSV N+++ MY+    + A  ++F  +   + IS+  +M  +
Sbjct: 563 TVGESVHSLAIRSGCNLDVSVANALITMYTNCGIIQAGEKLFDSLSSVNTISYNALMTGY 622

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
                  + L +F  M K+    + + LLNL+    I     +GK +H+  +    + E 
Sbjct: 623 RKNNLFKEILPLFYHMIKNDQKPNIITLLNLL---PICHSQLQGKTVHSYAIRNFSKLET 679

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF--IKMR 344
            L  S I MYS+  +L+   ++F  + E++ + W AI+S  VQ   A  A + F  I+  
Sbjct: 680 SLFTSAICMYSRFNNLEYCHNLFCLVGERNNIVWNAILSACVQCKQAGVAFDYFRQIQFL 739

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
             KTD+V   T++++++A  +L   ++   +  IA + GF     V N LI  +S+CG++
Sbjct: 740 NVKTDAV---TMLALISACSQLGKADLAECVTAIALQKGFDGTIVVLNALIDMHSRCGSI 796

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
             A  +F+ +   +D VSW+T+I  Y ++G G +AL L+  M  TG  PD  T++S+L+A
Sbjct: 797 SFARKIFD-ISMEKDSVSWSTMINAYSMHGDGGSALDLFLMMVSTGIKPDDITFVSVLSA 855

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C  +G    G  +F  M+ ++ + P  EHY C+VDLL R G L +A  +   +      +
Sbjct: 856 CSRSGFLEQGRTLFRSMLADHGITPRMEHYACMVDLLGRTGHLDEAYDIVTTMPFRPSKS 915

Query: 525 IWRALLSGCVLH---------------------------------VGRFQDAEALRSGSQ 551
           +  +LL  C  H                                  G++ D E LRS  +
Sbjct: 916 LLESLLGACRFHGNSKLGESVGKILTESDHGNPRSYVMLSNIYASAGKWSDYERLRSDME 975

Query: 552 KKGIIKIPGISFLNST 567
            KG+IK  G+S +  T
Sbjct: 976 AKGLIKDVGVSLIGGT 991



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 149/549 (27%), Positives = 271/549 (49%), Gaps = 31/549 (5%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + LL  Y KSG++  +  +FD +  ++++SW+ +I GYS+NG   ++ +A   M   G  
Sbjct: 181 TALLDMYAKSGQVDLSRRVFDGMKSRDLISWNAMISGYSLNGCLLEAAEALKQMQQDGFR 240

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------L 106
           PN+ ++VG++   +GL   +    +H   +K G+  D                      L
Sbjct: 241 PNASSLVGIVSMVSGLGVRDAGDPLHAFALKSGVLGDESVTPAFISMYAAFGHLSSSLSL 300

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           F       LVSCN++++  + +  +++A  +F   R  GLVPN VT+++++  C      
Sbjct: 301 FHQSLVDNLVSCNSMISVCMQHGAWEKAFGVFRLMRCKGLVPNLVTVVSILPCCSNFFGI 360

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
              E +HG+ IK GL   VSV ++++ MYS L DLD+A+ +F  +  K  + W  ++  +
Sbjct: 361 NHGESVHGMVIKFGLAEQVSVVSALVSMYSKLGDLDSAVFLFSSVTEKSQLLWNSLISGY 420

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
           +        +   R M+   +  D + ++++IS      DL  GK +HA  V   L+   
Sbjct: 421 LVNNKWNMVMGSVRRMQIEGVDPDALTVISVISKCRHTEDLHVGKSIHAYAVRSRLELNE 480

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            + N+++AMY+ CG L     +F+ +  ++L+SW  IISG+ +NG +   L  F +MR  
Sbjct: 481 SVMNALLAMYADCGQLSICCKLFHTMEVRTLISWNTIISGFAENGDSVACLRFFCQMRLA 540

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
                D +TL++++++   +  + +   +H +A  +G     SV N LI+ Y+ CG +  
Sbjct: 541 DMQ-FDLVTLIALISSLSAIEDITVGESVHSLAIRSGCNLDVSVANALITMYTNCGIIQA 599

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
              +F+ +  + + +S+N ++ GY  N   +  L L++ M +  + P+  T L++L  C 
Sbjct: 600 GEKLFDSLSSV-NTISYNALMTGYRKNNLFKEILPLFYHMIKNDQKPNIITLLNLLPIC- 657

Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI- 525
           H+ L   G  + +  I  N  K     +   + + +R   L     L    L G   NI 
Sbjct: 658 HSQL--QGKTVHSYAI-RNFSKLETSLFTSAICMYSRFNNLEYCHNLF--CLVGERNNIV 712

Query: 526 WRALLSGCV 534
           W A+LS CV
Sbjct: 713 WNAILSACV 721



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 108/433 (24%), Positives = 214/433 (49%), Gaps = 26/433 (6%)

Query: 36  VVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHG 95
           V   +I +  +S +GFH + +  +  +   G   ++FT   V+ A A +  L L + +H 
Sbjct: 109 VYDLNIAVRCFSDHGFHRELLGLYREVCAFG--SDNFTFPPVIRACAAVSCLRLGKEVHC 166

Query: 96  LMVKFG----------------------LESDLFEGLKNPYLVSCNAIVAGFINNKLFQQ 133
            +V+ G                      L   +F+G+K+  L+S NA+++G+  N    +
Sbjct: 167 RVVRTGHGGNVGVQTALLDMYAKSGQVDLSRRVFDGMKSRDLISWNAMISGYSLNGCLLE 226

Query: 134 AVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLD 193
           A       +  G  PNA +++ ++     LG R   + +H   +K G++ D SV  + + 
Sbjct: 227 AAEALKQMQQDGFRPNASSLVGIVSMVSGLGVRDAGDPLHAFALKSGVLGDESVTPAFIS 286

Query: 194 MYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVA 253
           MY+    L +++ +F +    +++S   M+ + +       A  +FR MR   ++ + V 
Sbjct: 287 MYAAFGHLSSSLSLFHQSLVDNLVSCNSMISVCMQHGAWEKAFGVFRLMRCKGLVPNLVT 346

Query: 254 LLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT 313
           +++++   +    +  G+ +H  V+  GL  ++ + +++++MYSK GDLDS+  +F+ +T
Sbjct: 347 VVSILPCCSNFFGINHGESVHGMVIKFGLAEQVSVVSALVSMYSKLGDLDSAVFLFSSVT 406

Query: 314 EKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICL 373
           EKS + W ++ISGY+ N      +    +M+ E  D  D++T++S+++       L +  
Sbjct: 407 EKSQLLWNSLISGYLVNNKWNMVMGSVRRMQIEGVDP-DALTVISVISKCRHTEDLHVGK 465

Query: 374 QLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVN 433
            +H  A  +      SV N L++ Y+ CG + +   +F  M  +R ++SWNTII G+  N
Sbjct: 466 SIHAYAVRSRLELNESVMNALLAMYADCGQLSICCKLFHTME-VRTLISWNTIISGFAEN 524

Query: 434 GHGETALALYHKM 446
           G     L  + +M
Sbjct: 525 GDSVACLRFFCQM 537



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 117/495 (23%), Positives = 233/495 (47%), Gaps = 41/495 (8%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D   +   +S Y   G +  + +LF +    N+VS + +I     +G  EK+   F  M 
Sbjct: 277 DESVTPAFISMYAAFGHLSSSLSLFHQSLVDNLVSCNSMISVCMQHGAWEKAFGVFRLMR 336

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
             GL+PN  T+V +L   +    +    S+HG+++KFGL                     
Sbjct: 337 CKGLVPNLVTVVSILPCCSNFFGINHGESVHGMVIKFGLAEQVSVVSALVSMYSKLGDLD 396

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               LF  +     +  N++++G++ N  +   +      +  G+ P+A+T+++VI  C 
Sbjct: 397 SAVFLFSSVTEKSQLLWNSLISGYLVNNKWNMVMGSVRRMQIEGVDPDALTVISVISKCR 456

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
                 + + IH   ++  L L+ SV N++L MY+    L    ++F  ME + +ISW  
Sbjct: 457 HTEDLHVGKSIHAYAVRSRLELNESVMNALLAMYADCGQLSICCKLFHTMEVRTLISWNT 516

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++  F +   +   L+ F +MR + +  D V L+ LIS  + + D+  G+ +H+  +  G
Sbjct: 517 IISGFAENGDSVACLRFFCQMRLADMQFDLVTLIALISSLSAIEDITVGESVHSLAIRSG 576

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
              ++ ++N++I MY+ CG + +   +F+ ++  + +S+ A+++GY +N   +E L  F 
Sbjct: 577 CNLDVSVANALITMYTNCGIIQAGEKLFDSLSSVNTISYNALMTGYRKNNLFKEILPLFY 636

Query: 342 KM-RQEKTDSVDSITLVSILTASGELAALEICL-QLHGIAFEAGFPR-YRSVQNCLISS- 397
            M + ++  ++  ITL+++         L IC  QL G    +   R +  ++  L +S 
Sbjct: 637 HMIKNDQKPNI--ITLLNL---------LPICHSQLQGKTVHSYAIRNFSKLETSLFTSA 685

Query: 398 ---YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
              YS+  N++  + +F  +G   ++V WN I+           A   + ++       D
Sbjct: 686 ICMYSRFNNLEYCHNLFCLVGERNNIV-WNAILSACVQCKQAGVAFDYFRQIQFLNVKTD 744

Query: 455 SSTYLSILNACGHAG 469
           + T L++++AC   G
Sbjct: 745 AVTMLALISACSQLG 759



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 80/330 (24%), Positives = 156/330 (47%), Gaps = 28/330 (8%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D   ++ L++ Y   G I+  E LFD +   N +S++ ++ GY  N   ++ +  F HM
Sbjct: 579 LDVSVANALITMYTNCGIIQAGEKLFDSLSSVNTISYNALMTGYRKNNLFKEILPLFYHM 638

Query: 63  MLSGLLPNSFTMVGVL-VAAAGLQNLELARSIHGLMVK--FGLESDLFEGLKNPY----- 114
           + +   PN  T++ +L +  + LQ     +++H   ++    LE+ LF      Y     
Sbjct: 639 IKNDQKPNIITLLNLLPICHSQLQ----GKTVHSYAIRNFSKLETSLFTSAICMYSRFNN 694

Query: 115 LVSCNAI--VAGFINNKLF----------QQAVLLFNFFRGSGLV---PNAVTMLTVIRG 159
           L  C+ +  + G  NN ++          +QA + F++FR    +    +AVTML +I  
Sbjct: 695 LEYCHNLFCLVGERNNIVWNAILSACVQCKQAGVAFDYFRQIQFLNVKTDAVTMLALISA 754

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C  LG   L E +  + ++ G    + V N+++DM+S    +  A +IF     KD +SW
Sbjct: 755 CSQLGKADLAECVTAIALQKGFDGTIVVLNALIDMHSRCGSISFARKIFDISMEKDSVSW 814

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           + M+  +      G AL +F  M  + I  D +  ++++S  +  G L++G+ L   ++ 
Sbjct: 815 STMINAYSMHGDGGSALDLFLMMVSTGIKPDDITFVSVLSACSRSGFLEQGRTLFRSMLA 874

Query: 280 G-GLQSELRLSNSIIAMYSKCGDLDSSRSV 308
             G+   +     ++ +  + G LD +  +
Sbjct: 875 DHGITPRMEHYACMVDLLGRTGHLDEAYDI 904


>gi|358347043|ref|XP_003637572.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503507|gb|AES84710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 833

 Score =  237 bits (605), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 178/618 (28%), Positives = 282/618 (45%), Gaps = 114/618 (18%)

Query: 7   NSSKLLSNYFKSGKIKEAENLFDE--IPEKNVVSW--SIVIHGYSINGFHEKSMKAFSHM 62
           N + L+  Y  S  I  A  L ++   P  + V W   ++ H    N     +++ F  M
Sbjct: 59  NVTNLIYTYISSNSITNAILLLEKNVTPSHSSVYWWNQLIRHALHFNS-PNTALRLFRRM 117

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIV 122
                 P+ +T   V  A   + N EL  SIHG +++ G ES++F          CNA++
Sbjct: 118 KTLHWTPDHYTFPFVFKACGEISNFELGASIHGCVIRLGFESNVF---------VCNAVI 168

Query: 123 AGFINNKLFQQAVLLFN-------------------------------FFR----GSGLV 147
           + +   K    A  +F+                                FR    G G++
Sbjct: 169 SMYGKCKAVVHARKVFDELCYRGICDSVTWNSIVSVYSHCFVPNVAVSLFREMTVGYGIL 228

Query: 148 PNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQI 207
           P+ V ++ ++  C  LG       +HG  ++ GL+ DV V N+++DMY+    ++ A ++
Sbjct: 229 PDTVGVVNILPVCGYLGLGLCGRQVHGFCVRSGLVEDVFVGNALVDMYAKCGKMEDANKV 288

Query: 208 FREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVA-------------- 253
           F  M  KDV++W  M+  +       DAL +F +MR+ +I  D V               
Sbjct: 289 FERMRFKDVVTWNAMVTGYSQNGRFEDALSLFGKMREEKIESDVVTWSSVISGYAQRGFG 348

Query: 254 ---------------------LLNLISVNAILGDLKRGKQLHAQVVLGGLQSE------- 285
                                L++L+S  A +G L  GK+ H   V   L+ E       
Sbjct: 349 CEAMDVFRQMCGCRCRPNVVTLMSLLSACASVGALLHGKETHCYSVKFILKGEHNDDTDD 408

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQI--TEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
           L + N++I MY+KC  L+ +R++F++I   ++ +V+WT +I GY Q+G A  AL  F +M
Sbjct: 409 LAVINALIDMYAKCKSLEVARAMFDEICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEM 468

Query: 344 -RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS----VQNCLISSY 398
            + +     +  T+  +L A   LAAL+   Q+H         R  S    V NCLI  Y
Sbjct: 469 FKIDNCIVPNDFTISCVLMACARLAALKFGKQIHAYVLRRS--RIDSDVLFVANCLIDMY 526

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
           SK G+VD A +VF+ M   R+ VSW +++ GYG++G  E A  ++ +M +   V D  T+
Sbjct: 527 SKSGDVDTAQVVFDSMS-KRNAVSWTSLLTGYGMHGRSEDAFRVFDEMRKEALVLDGITF 585

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
           L +L AC H+G+             +  V P  EHY C+VDLL RAG L +A  L   + 
Sbjct: 586 LVVLYACSHSGM-------------DFGVDPGVEHYACMVDLLGRAGRLGEAMRLINDMP 632

Query: 519 EGMGPNIWRALLSGCVLH 536
               P +W ALLS C +H
Sbjct: 633 IEPTPVVWIALLSACRIH 650



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 103/372 (27%), Positives = 194/372 (52%), Gaps = 58/372 (15%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L+  Y K GK+++A  +F+ +  K+VV+W+ ++ GYS NG             
Sbjct: 265 DVFVGNALVDMYAKCGKMEDANKVFERMRFKDVVTWNAMVTGYSQNG------------- 311

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVA 123
                                   E A S+ G M +  +ESD+         V+ +++++
Sbjct: 312 ----------------------RFEDALSLFGKMREEKIESDV---------VTWSSVIS 340

Query: 124 GFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGL-- 181
           G+       +A+ +F    G    PN VT+++++  C ++G+    +  H  ++K  L  
Sbjct: 341 GYAQRGFGCEAMDVFRQMCGCRCRPNVVTLMSLLSACASVGALLHGKETHCYSVKFILKG 400

Query: 182 -----ILDVSVNNSVLDMYSCLMDLDAAIQIFREM--ECKDVISWTRMMGLFVDFEYAGD 234
                  D++V N+++DMY+    L+ A  +F E+  + +DV++WT M+G +     A  
Sbjct: 401 EHNDDTDDLAVINALIDMYAKCKSLEVARAMFDEICPKDRDVVTWTVMIGGYAQHGDANH 460

Query: 235 ALKIFREMRK--SRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG-LQSE-LRLSN 290
           AL++F EM K  + I+ +   +  ++   A L  LK GKQ+HA V+    + S+ L ++N
Sbjct: 461 ALQLFSEMFKIDNCIVPNDFTISCVLMACARLAALKFGKQIHAYVLRRSRIDSDVLFVAN 520

Query: 291 SIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDS 350
            +I MYSK GD+D+++ VF+ +++++ VSWT++++GY  +G + +A   F +MR+E    
Sbjct: 521 CLIDMYSKSGDVDTAQVVFDSMSKRNAVSWTSLLTGYGMHGRSEDAFRVFDEMRKEAL-V 579

Query: 351 VDSITLVSILTA 362
           +D IT + +L A
Sbjct: 580 LDGITFLVVLYA 591


>gi|115476154|ref|NP_001061673.1| Os08g0375800 [Oryza sativa Japonica Group]
 gi|27260973|dbj|BAC45090.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|40253357|dbj|BAD05289.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113623642|dbj|BAF23587.1| Os08g0375800 [Oryza sativa Japonica Group]
 gi|215715200|dbj|BAG94951.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 696

 Score =  237 bits (605), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 172/626 (27%), Positives = 292/626 (46%), Gaps = 74/626 (11%)

Query: 5   PYNSSKLLSNYFKSGK--IKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           P+N  +LL+ Y +S    +  A  +FDE+P ++ VSW+ ++   + +G H ++ +    M
Sbjct: 27  PWN--QLLTAYSRSSPDGLAAARRVFDEVPRRDEVSWNALLAAQAASGAHPEAWRLLRAM 84

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--------------- 107
              GL  N+F +   L +AA  +   +   +  L +K GL +++F               
Sbjct: 85  HAQGLASNTFALGSALRSAAVARRPAIGAQLQSLALKSGLANNVFAASALLDVYAKCGRV 144

Query: 108 -------EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVT---MLTVI 157
                  +G+     VS NA++AG+  +     A+ LF      GL P+  T   +LT +
Sbjct: 145 RDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLAPDEATFASLLTAV 204

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM-ECKDV 216
            G        L   +HG  +K G  L ++V N+ +  YS    L  + +IF  + + +D+
Sbjct: 205 EGPSCF----LMHQLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRIFDGIGDIRDL 260

Query: 217 ISWTRMMGLFVDFEYAGDALKIF-REMRKSRIICDTVALLNLISVNAILG-DLKRGKQLH 274
           ISW  M+G +       +A+K F R M++S +  D  +  ++IS  +  G D  +G+ +H
Sbjct: 261 ISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHGHDDHQGRVIH 320

Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGD---LDSSRSVFNQITEKSLVSWTAIISGYVQNG 331
             V+   L+    + N++IAMY++  +   ++ +   FN +  K  VSW ++++GY Q+G
Sbjct: 321 GLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSLVLKDTVSWNSMLTGYSQHG 380

Query: 332 CAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ 391
            + +AL  F  M  E   + D     + L +S ELA L++  Q+HG+   +GF     V 
Sbjct: 381 LSADALKFFRCMCSENVRT-DEYAFSAALRSSSELAVLQLGKQIHGLVIHSGFASNDFVS 439

Query: 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE 451
           + LI  YSK G +D A   FEE       V WN +I+GY  +G  E    L+++M +   
Sbjct: 440 SSLIFMYSKSGIIDDARKSFEEAD-KSSSVPWNAMIFGYAQHGQAENVDILFNEMLQRKA 498

Query: 452 VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDAS 511
             D  T++ ++ +C HAGL ++G  I N M  +  V    EHY C VDL  RAG L  A 
Sbjct: 499 PLDHITFVGLITSCSHAGLVDEGSEILNTMETKYGVPLRMEHYACGVDLYGRAGQLDKAK 558

Query: 512 GLAGKLLEGMGPNIWRALLSGCVLH---------------------------------VG 538
            L   +       +W  LL  C +H                                 +G
Sbjct: 559 KLIDSMPFEPDAMVWMTLLGACRIHGNVELASDVASHLFVAEPRQHSTYVLLSSMYSGLG 618

Query: 539 RFQDAEALRSGSQKKGIIKIPGISFL 564
            + D   ++   +K+G+ K+PG S++
Sbjct: 619 MWSDRATVQRVMKKRGLSKVPGWSWI 644


>gi|302763107|ref|XP_002964975.1| hypothetical protein SELMODRAFT_30550 [Selaginella moellendorffii]
 gi|300167208|gb|EFJ33813.1| hypothetical protein SELMODRAFT_30550 [Selaginella moellendorffii]
          Length = 703

 Score =  237 bits (604), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 173/553 (31%), Positives = 280/553 (50%), Gaps = 34/553 (6%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+S Y +  ++  A  +FD+I  K+VVSW+ +I   +  G  E++++ F  M L    PN
Sbjct: 128 LVSMYARCSRLDVARVVFDKIESKSVVSWNAMIAACARQGEAEQALQLFKRMELE---PN 184

Query: 71  SFTMVGVLVAAAGLQN-LELARSIH----------------------GLMVKFGLESDLF 107
             T   V  A + L +  E+ + IH                      G   K G+   +F
Sbjct: 185 EVTFASVFNACSLLPDHREVGKRIHDRIRGSHLEANVTVATAIVTMYGKFGKVGMARQVF 244

Query: 108 EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRA 167
            G+++  +VS NA++  +  N L ++A+ +++      +  + VT++  +    +L    
Sbjct: 245 NGIQHKNVVSWNAMLGAYTQNNLDREALEVYHEMVAQKVQRDEVTVVIALGISASLRLLK 304

Query: 168 LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
           L   +H L++  G   ++ V N+++ MY    +LDAA ++F ++   DV+SWT ++  + 
Sbjct: 305 LGIELHELSVAHGYDSNIKVQNALISMYGKCNELDAARRVFSKVRAHDVVSWTALIVAYT 364

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL--GGLQSE 285
                 +AL+++++M    +  D V   +++S  +   DL+ G+ LHA+++    G  S+
Sbjct: 365 QHGRNREALELYKQMEGEGMEPDKVTFTSVLSACSNTSDLELGQALHARLLARKDGF-SD 423

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITE-KSLVSWTAIISGYVQNGCAREALNQFIKMR 344
             L  ++I MY KCG LD S  +F    + K++V W A+I+ Y Q G +R A++ +  M+
Sbjct: 424 GVLVAALINMYVKCGRLDLSSEIFQSCKDTKAVVVWNAMITAYEQEGYSRAAVDLYDMMK 483

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLH-GIAFEAGFPRYRSVQNCLISSYSKCGN 403
           Q   D  D  TL SIL+A  EL  LE   QLH  I       +   V N LIS Y+ CG 
Sbjct: 484 QRGLDP-DESTLSSILSACAELQDLEKGEQLHVEIIASRDCSQNPVVLNALISMYASCGE 542

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           +  A  VF+ M   RDVVSW  +I  Y   G    AL LY +M   G  P   T+L +  
Sbjct: 543 IREAKAVFKRMKN-RDVVSWTILISAYVQGGDARRALRLYRRMLVEGVQPTEPTFLCVFL 601

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
           ACGHAGL ++    F  MI E+++ P+ +HY CVV +L+RAG L +A  L   +    G 
Sbjct: 602 ACGHAGLVDECKWYFQSMI-EDRITPTFDHYSCVVTVLSRAGKLEEAEDLLHSMPFNPGS 660

Query: 524 NIWRALLSGCVLH 536
             W +LL  C  H
Sbjct: 661 VGWTSLLGACRTH 673



 Score =  234 bits (597), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 151/488 (30%), Positives = 249/488 (51%), Gaps = 30/488 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +    LL  Y K G + +A  +F  +P +++ SW+ +I  ++ N    K+++ F  M 
Sbjct: 20  DGFLGDHLLQMYGKCGSVDDAIQVFHSLPRRSLFSWNFIIAAFAKNRHGRKAIEMFRSMD 79

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------- 106
            +G+ P+S T+  VL A + L++LE  + IH   +  GL S +                 
Sbjct: 80  SAGIKPDSATLSSVLGACSSLRDLEEGKKIHSRALARGLSSSIIVQNALVSMYARCSRLD 139

Query: 107 -----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                F+ +++  +VS NA++A        +QA+ LF       L PN VT  +V   C 
Sbjct: 140 VARVVFDKIESKSVVSWNAMIAACARQGEAEQALQLFKRME---LEPNEVTFASVFNACS 196

Query: 162 ALGS-RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
            L   R + + IH       L  +V+V  +++ MY     +  A Q+F  ++ K+V+SW 
Sbjct: 197 LLPDHREVGKRIHDRIRGSHLEANVTVATAIVTMYGKFGKVGMARQVFNGIQHKNVVSWN 256

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+G +       +AL+++ EM   ++  D V ++  + ++A L  LK G +LH   V  
Sbjct: 257 AMLGAYTQNNLDREALEVYHEMVAQKVQRDEVTVVIALGISASLRLLKLGIELHELSVAH 316

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           G  S +++ N++I+MY KC +LD++R VF+++    +VSWTA+I  Y Q+G  REAL  +
Sbjct: 317 GYDSNIKVQNALISMYGKCNELDAARRVFSKVRAHDVVSWTALIVAYTQHGRNREALELY 376

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHG--IAFEAGFPRYRSVQNCLISSY 398
            +M  E  +  D +T  S+L+A    + LE+   LH   +A + GF     V   LI+ Y
Sbjct: 377 KQMEGEGMEP-DKVTFTSVLSACSNTSDLELGQALHARLLARKDGFSDGVLVA-ALINMY 434

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
            KCG +DL+  +F+     + VV WN +I  Y   G+   A+ LY  M + G  PD ST 
Sbjct: 435 VKCGRLDLSSEIFQSCKDTKAVVVWNAMITAYEQEGYSRAAVDLYDMMKQRGLDPDESTL 494

Query: 459 LSILNACG 466
            SIL+AC 
Sbjct: 495 SSILSACA 502



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 145/276 (52%), Gaps = 6/276 (2%)

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           IH   +  GL  D  + + +L MY     +D AIQ+F  +  + + SW  ++  F    +
Sbjct: 8   IHAHIVASGLASDGFLGDHLLQMYGKCGSVDDAIQVFHSLPRRSLFSWNFIIAAFAKNRH 67

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
              A+++FR M  + I  D+  L +++   + L DL+ GK++H++ +  GL S + + N+
Sbjct: 68  GRKAIEMFRSMDSAGIKPDSATLSSVLGACSSLRDLEEGKKIHSRALARGLSSSIIVQNA 127

Query: 292 IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
           +++MY++C  LD +R VF++I  KS+VSW A+I+   + G A +AL  F +M  E  +  
Sbjct: 128 LVSMYARCSRLDVARVVFDKIESKSVVSWNAMIAACARQGEAEQALQLFKRMELEPNE-- 185

Query: 352 DSITLVSILTASGELA-ALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIV 410
             +T  S+  A   L    E+  ++H     +      +V   +++ Y K G V +A  V
Sbjct: 186 --VTFASVFNACSLLPDHREVGKRIHDRIRGSHLEANVTVATAIVTMYGKFGKVGMARQV 243

Query: 411 FEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM 446
           F  +   ++VVSWN ++  Y  N     AL +YH+M
Sbjct: 244 FNGIQH-KNVVSWNAMLGAYTQNNLDREALEVYHEM 278



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/199 (35%), Positives = 108/199 (54%), Gaps = 5/199 (2%)

Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISG 326
           L +G+++HA +V  GL S+  L + ++ MY KCG +D +  VF+ +  +SL SW  II+ 
Sbjct: 2   LPQGRRIHAHIVASGLASDGFLGDHLLQMYGKCGSVDDAIQVFHSLPRRSLFSWNFIIAA 61

Query: 327 YVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPR 386
           + +N   R+A+  F  M        DS TL S+L A   L  LE   ++H  A   G   
Sbjct: 62  FAKNRHGRKAIEMFRSMDSAGIKP-DSATLSSVLGACSSLRDLEEGKKIHSRALARGLSS 120

Query: 387 YRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM 446
              VQN L+S Y++C  +D+A +VF+++   + VVSWN +I      G  E AL L+ +M
Sbjct: 121 SIIVQNALVSMYARCSRLDVARVVFDKIES-KSVVSWNAMIAACARQGEAEQALQLFKRM 179

Query: 447 TETGEVPDSSTYLSILNAC 465
                 P+  T+ S+ NAC
Sbjct: 180 ELE---PNEVTFASVFNAC 195



 Score = 45.4 bits (106), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 45/77 (58%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           +P   + L+S Y   G+I+EA+ +F  +  ++VVSW+I+I  Y   G   ++++ +  M+
Sbjct: 526 NPVVLNALISMYASCGEIREAKAVFKRMKNRDVVSWTILISAYVQGGDARRALRLYRRML 585

Query: 64  LSGLLPNSFTMVGVLVA 80
           + G+ P   T + V +A
Sbjct: 586 VEGVQPTEPTFLCVFLA 602


>gi|125603224|gb|EAZ42549.1| hypothetical protein OsJ_27115 [Oryza sativa Japonica Group]
          Length = 696

 Score =  237 bits (604), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 172/626 (27%), Positives = 292/626 (46%), Gaps = 74/626 (11%)

Query: 5   PYNSSKLLSNYFKSGK--IKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           P+N  +LL+ Y +S    +  A  +FDE+P ++ VSW+ ++   + +G H ++ +    M
Sbjct: 27  PWN--QLLTAYSRSSPDGLAAARRVFDEVPRRDEVSWNALLAAQAASGAHPEAWRLLRAM 84

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--------------- 107
              GL  N+F +   L +AA  +   +   +  L +K GL +++F               
Sbjct: 85  HAQGLASNTFALGSALRSAAVARRPAIGAQLQSLALKSGLANNVFAASALLDVYAKCGRV 144

Query: 108 -------EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVT---MLTVI 157
                  +G+     VS NA++AG+  +     A+ LF      GL P+  T   +LT +
Sbjct: 145 RDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLAPDEATFASLLTAV 204

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM-ECKDV 216
            G        L   +HG  +K G  L ++V N+ +  YS    L  + +IF  + + +D+
Sbjct: 205 EGPSCF----LMHQLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRIFDGIGDIRDL 260

Query: 217 ISWTRMMGLFVDFEYAGDALKIF-REMRKSRIICDTVALLNLISVNAILG-DLKRGKQLH 274
           ISW  M+G +       +A+K F R M++S +  D  +  ++IS  +  G D  +G+ +H
Sbjct: 261 ISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHGHDDHQGRVIH 320

Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGD---LDSSRSVFNQITEKSLVSWTAIISGYVQNG 331
             V+   L+    + N++IAMY++  +   ++ +   FN +  K  VSW ++++GY Q+G
Sbjct: 321 GLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSLVLKDTVSWNSMLTGYSQHG 380

Query: 332 CAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ 391
            + +AL  F  M  E   + D     + L +S ELA L++  Q+HG+   +GF     V 
Sbjct: 381 LSADALKFFRCMCSENVRT-DEYAFSAALRSSSELAVLQLGKQIHGLVIHSGFASNDFVS 439

Query: 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE 451
           + LI  YSK G +D A   FEE       V WN +I+GY  +G  E    L+++M +   
Sbjct: 440 SSLIFMYSKSGIIDDARKSFEEAD-KSSSVPWNAMIFGYAQHGQAENVDILFNEMLQRKA 498

Query: 452 VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDAS 511
             D  T++ ++ +C HAGL ++G  I N M  +  V    EHY C VDL  RAG L  A 
Sbjct: 499 PLDHITFVGLITSCSHAGLVDEGSEILNTMETKYGVPLRMEHYACGVDLYGRAGQLDKAK 558

Query: 512 GLAGKLLEGMGPNIWRALLSGCVLH---------------------------------VG 538
            L   +       +W  LL  C +H                                 +G
Sbjct: 559 KLIDSMPFEPDAMVWMTLLGACRIHGNVELASDVASHLFVAEPRQHSTYVLLSSMYSGLG 618

Query: 539 RFQDAEALRSGSQKKGIIKIPGISFL 564
            + D   ++   +K+G+ K+PG S++
Sbjct: 619 MWSDRATVQRVMKKRGLSKVPGWSWI 644


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  237 bits (604), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 159/553 (28%), Positives = 263/553 (47%), Gaps = 61/553 (11%)

Query: 67  LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL-----------------------E 103
           L P+SFT   ++ AA G  +   A  +H   ++ GL                        
Sbjct: 65  LRPDSFTFPPLVRAAPGPAS---AAQLHACALRLGLLHPNVFASGSLVHAYLRFGRVAEA 121

Query: 104 SDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
             +F+ +    + + NA+++G   N     AV L     G G+  +AVT+ +V+  CV L
Sbjct: 122 YRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCVVL 181

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
           G RAL  ++H   +K GL  ++ V N+++D+Y  L  L  A  +F  M  +D+++W  ++
Sbjct: 182 GDRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSII 241

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
                      A+++F  M +S +  D + L++L S  A  GD    K +H  V   G  
Sbjct: 242 SANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWD 301

Query: 284 -SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
             ++   N+++ MY+K   +D+++ VF+ + ++ +VSW  +I+GY+QNG A EA+  +  
Sbjct: 302 VGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYND 361

Query: 343 MRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
           M   +       T VS+L A   L  L+  +++H ++ + G      V  CLI  Y+KCG
Sbjct: 362 MHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHALSIKTGLNLDVYVTTCLIDLYAKCG 421

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
            +  A  +FE M   R    WN II G GV+GHG  AL+L+ +M +    PD  T++S+L
Sbjct: 422 KLVEAMFLFEHMP-RRSTGPWNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDHVTFVSLL 480

Query: 463 NACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMG 522
            AC HAGL + G   F+ M     + P  +HY C+VD+L RAG L +A      +     
Sbjct: 481 AACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYTCMVDMLGRAGQLDEAFEFIQSMPIKPD 540

Query: 523 PNIWRALLSGCVLH---------------------------------VGRFQDAEALRSG 549
             +W ALL  C +H                                 +G++   +A+RS 
Sbjct: 541 SAVWGALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKIGKWDGVDAVRSL 600

Query: 550 SQKKGIIKIPGIS 562
            +++ + K PG S
Sbjct: 601 VRRQNLQKTPGWS 613



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 110/463 (23%), Positives = 218/463 (47%), Gaps = 38/463 (8%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           + S  L+  Y + G++ EA  +FDE+PE++V +W+ ++ G   N     ++     M+  
Sbjct: 103 FASGSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGE 162

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY--------- 114
           G+  ++ T+  VL     L +  LA  +H   VK GL  +LF    L + Y         
Sbjct: 163 GVAGDAVTLSSVLPMCVVLGDRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEA 222

Query: 115 -----------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
                      LV+ N+I++          AV LF+    SG+ P+ +T++++       
Sbjct: 223 HWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQC 282

Query: 164 GSRALCELIHGLTIKLGL-ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
           G     + +H    + G  + D+   N+++DMY+ +  +DAA ++F  +  +DV+SW  +
Sbjct: 283 GDELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTL 342

Query: 223 MGLFVDFEYAGDALKIFREMRKSRIICDTV-ALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           +  ++    A +A++I+ +M     +       ++++   + LG L++G ++HA  +  G
Sbjct: 343 ITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHALSIKTG 402

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           L  ++ ++  +I +Y+KCG L  +  +F  +  +S   W AII+G   +G   +AL+ F 
Sbjct: 403 LNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGPWNAIIAGLGVHGHGAKALSLFS 462

Query: 342 KMRQEKTDSVDSITLVSILTASGEL-------AALEICLQLHGIAFEAGFPRYRSVQNCL 394
           +M+QE+    D +T VS+L A           +  ++   ++GI   A          C+
Sbjct: 463 QMQQEEIKP-DHVTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKH------YTCM 515

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGE 437
           +    + G +D A+   + M    D   W  ++    ++G+ E
Sbjct: 516 VDMLGRAGQLDEAFEFIQSMPIKPDSAVWGALLGACRIHGNVE 558



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 50/95 (52%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D Y ++ L+  Y K GK+ EA  LF+ +P ++   W+ +I G  ++G   K++  FS M
Sbjct: 405 LDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGPWNAIIAGLGVHGHGAKALSLFSQM 464

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLM 97
               + P+  T V +L A +    ++  RS   LM
Sbjct: 465 QQEEIKPDHVTFVSLLAACSHAGLVDQGRSFFDLM 499


>gi|334184678|ref|NP_180987.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546770|sp|O64705.2|PP184_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g34400
 gi|330253874|gb|AEC08968.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score =  237 bits (604), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 146/414 (35%), Positives = 224/414 (54%), Gaps = 10/414 (2%)

Query: 100 FGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVL-LFNFFRGSGLVPNAVTMLTVIR 158
           F   S LF   + P   S N ++ G  N     +A L L+   + SGL P+  T   V  
Sbjct: 81  FNYSSFLFSVTEEPNHYSFNYMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFI 140

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C  L    +   +H    K+GL  DV +N+S++ MY+    +  A ++F E+  +D +S
Sbjct: 141 ACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVS 200

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           W  M+  + +  YA DA+ +FR+M +     D   L++++   + LGDL+ G+ L    +
Sbjct: 201 WNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAI 260

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
              +     L + +I+MY KCGDLDS+R VFNQ+ +K  V+WTA+I+ Y QNG + EA  
Sbjct: 261 TKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFK 320

Query: 339 QFIKMRQEKTD-SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
            F +M  EKT  S D+ TL ++L+A G + ALE+  Q+   A E        V   L+  
Sbjct: 321 LFFEM--EKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDM 378

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS- 456
           Y KCG V+ A  VFE M  +++  +WN +I  Y   GH + AL L+ +M+    VP S  
Sbjct: 379 YGKCGRVEEALRVFEAMP-VKNEATWNAMITAYAHQGHAKEALLLFDRMS----VPPSDI 433

Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
           T++ +L+AC HAGL + G   F++M     + P  EHY  ++DLL+RAG L +A
Sbjct: 434 TFIGVLSACVHAGLVHQGCRYFHEMSSMFGLVPKIEHYTNIIDLLSRAGMLDEA 487



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 111/412 (26%), Positives = 195/412 (47%), Gaps = 32/412 (7%)

Query: 27  LFDEIPEKNVVSWSIVIHGYSINGF--HEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGL 84
           LF    E N  S++ +I G + N +  HE ++  +  M  SGL P+ FT   V +A A L
Sbjct: 87  LFSVTEEPNHYSFNYMIRGLT-NTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKL 145

Query: 85  QNLELARSIHGLMVKFGLESD----------------------LFEGLKNPYLVSCNAIV 122
           + + + RS+H  + K GLE D                      LF+ +     VS N+++
Sbjct: 146 EEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMI 205

Query: 123 AGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLI 182
           +G+      + A+ LF      G  P+  T+++++  C  LG      L+  + I   + 
Sbjct: 206 SGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIG 265

Query: 183 LDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREM 242
           L   + + ++ MY    DLD+A ++F +M  KD ++WT M+ ++     + +A K+F EM
Sbjct: 266 LSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEM 325

Query: 243 RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDL 302
            K+ +  D   L  ++S    +G L+ GKQ+        LQ  + ++  ++ MY KCG +
Sbjct: 326 EKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRV 385

Query: 303 DSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTA 362
           + +  VF  +  K+  +W A+I+ Y   G A+EAL  F +M    +D    IT + +L+A
Sbjct: 386 EEALRVFEAMPVKNEATWNAMITAYAHQGHAKEALLLFDRMSVPPSD----ITFIGVLSA 441

Query: 363 SGELAAL-EICLQLHGIAFEAGF-PRYRSVQNCLISSYSKCGNVDLAYIVFE 412
                 + + C   H ++   G  P+     N +I   S+ G +D A+   E
Sbjct: 442 CVHAGLVHQGCRYFHEMSSMFGLVPKIEHYTN-IIDLLSRAGMLDEAWEFME 492



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 106/448 (23%), Positives = 197/448 (43%), Gaps = 41/448 (9%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + +  L+  Y K G++  A  LFDEI E++ VSW+ +I GYS  G+ + +M  F  M 
Sbjct: 166 DVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDAMDLFRKME 225

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMV--KFGLESDLFEGLKNPY------- 114
             G  P+  T+V +L A + L +L   R +  + +  K GL + L   L + Y       
Sbjct: 226 EEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLISMYGKCGDLD 285

Query: 115 -------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                         V+  A++  +  N    +A  LF     +G+ P+A T+ TV+  C 
Sbjct: 286 SARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACG 345

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
           ++G+  L + I     +L L  ++ V   ++DMY     ++ A+++F  M  K+  +W  
Sbjct: 346 SVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNEATWNA 405

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG-KQLHAQVVLG 280
           M+  +    +A +AL +F  M    +    +  + ++S     G + +G +  H    + 
Sbjct: 406 MITAYAHQGHAKEALLLFDRM---SVPPSDITFIGVLSACVHAGLVHQGCRYFHEMSSMF 462

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN----GCAREA 336
           GL  ++    +II + S+ G LD +     +   K      A I G            +A
Sbjct: 463 GLVPKIEHYTNIIDLLSRAGMLDEAWEFMERFPGKPDEIMLAAILGACHKRKDVAIREKA 522

Query: 337 LNQFIKMRQEKT--DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
           +   ++M++ K   + V S  +++ +    E A +   ++  G+    G   +  ++  L
Sbjct: 523 MRMLMEMKEAKNAGNYVISSNVLADMKMWDESAKMRALMRDRGVVKTPGCS-WIEIEGEL 581

Query: 395 I-----SSYSKCGNVD---LAYIVFEEM 414
           +     S Y +CG  D   L  ++ EEM
Sbjct: 582 MEFLAGSDYLQCGREDSGSLFDLLVEEM 609



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 112/240 (46%), Gaps = 13/240 (5%)

Query: 239 FREMRKSRIICDTVALLN-LISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYS 297
           F E R+  +  D + LL   ISVN +       +Q+ AQ++L  ++      N +I    
Sbjct: 28  FEEARRGDLERDFLFLLKKCISVNQL-------RQIQAQMLLHSVEK----PNFLIPKAV 76

Query: 298 KCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLV 357
           + GD + S  +F+   E +  S+  +I G        EA     +  +      D  T  
Sbjct: 77  ELGDFNYSSFLFSVTEEPNHYSFNYMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYN 136

Query: 358 SILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFL 417
            +  A  +L  + +   +H   F+ G  R   + + LI  Y+KCG V  A  +F+E+   
Sbjct: 137 FVFIACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEIT-E 195

Query: 418 RDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVI 477
           RD VSWN++I GY   G+ + A+ L+ KM E G  PD  T +S+L AC H G    G ++
Sbjct: 196 RDTVSWNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLL 255


>gi|224119336|ref|XP_002331286.1| predicted protein [Populus trichocarpa]
 gi|222873711|gb|EEF10842.1| predicted protein [Populus trichocarpa]
          Length = 897

 Score =  237 bits (604), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 155/555 (27%), Positives = 266/555 (47%), Gaps = 24/555 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D    S LL  Y K  ++ ++ ++F E+PEKN VSWS +I G   N  + + ++ F  M 
Sbjct: 215 DVVTGSALLGMYAKCKRLDDSLSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQ 274

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG-------------- 109
             G+  +      +  + A L  L L + +H   +K    SD+  G              
Sbjct: 275 GVGVGVSQSIYASLFRSCAALSALRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMA 334

Query: 110 --------LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                   +    L S NAI+ G+  +    QA+  F     +GL  + +T+   +  C 
Sbjct: 335 DAQKVLSSMPKCSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACA 394

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
           ++        +HGL +K   + ++ V N++LDMY     L  A  +F  ME +D +SW  
Sbjct: 395 SIRGDLEGRQVHGLAVKSISMSNICVANAILDMYGKCKALAEASDLFDMMERRDAVSWNA 454

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++          + L  F  M  SR+  D     +++   A    L  G ++H +++  G
Sbjct: 455 IIAACEQNGNEEETLAHFASMIHSRMEPDDFTYGSVLKACAGRQALNTGMEIHTRIIKSG 514

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           +  +  +  +++ MY KCG ++ +  + ++  +K++VSW AIISG+     + +A   F 
Sbjct: 515 MGFDSFVGAALVDMYCKCGMIEKADKIHDRTEQKTMVSWNAIISGFSLLQQSEDAHKFFS 574

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +M +   +  D+ T  ++L     LA + +  Q+H    +        + + L+  YSKC
Sbjct: 575 RMLEMGVNP-DNFTYAAVLDTCANLATVGLGKQIHAQIIKQELQSDVYICSTLVDMYSKC 633

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           GN+  + ++FE+    RD V+WN ++ GY  +G GE AL L+  M      P+ +T++S+
Sbjct: 634 GNMQDSQLMFEKAPN-RDFVTWNAMLCGYAHHGLGEEALKLFESMQLVNVKPNHATFVSV 692

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L AC H GL + GL  F+ M+ E  + P  EHY C+VD+L R+G + +A  L  K+    
Sbjct: 693 LRACAHMGLVDKGLHYFDVMLSEYGLDPQSEHYSCMVDILGRSGRIDEALNLVQKMPFEA 752

Query: 522 GPNIWRALLSGCVLH 536
              IWR LLS C +H
Sbjct: 753 DAVIWRNLLSVCKIH 767



 Score =  198 bits (504), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 156/560 (27%), Positives = 261/560 (46%), Gaps = 42/560 (7%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           YNS  ++S Y   G++  A   F E+PE++VVSW+ VI G+  NG   KS+  F  M   
Sbjct: 118 YNS--IISGYASCGEMDIARKFFYEMPERDVVSWNSVISGFLQNGECRKSIDVFLEMGRC 175

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-------------------- 105
           G+  +  ++  VL A   L+  ++   +HGL+VKFG + D                    
Sbjct: 176 GVGFDRASLAVVLKACGALEECDMGVQVHGLVVKFGFDCDVVTGSALLGMYAKCKRLDDS 235

Query: 106 --LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
             +F  L     VS +A++AG + N    + + LF   +G G+  +     ++ R C AL
Sbjct: 236 LSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFRSCAAL 295

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
            +  L + +H   +K     D+ V  + LDMY+    +  A ++   M    + S+  ++
Sbjct: 296 SALRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMPKCSLQSYNAII 355

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNA-ILGDLKRGKQLHAQVVLGGL 282
             +   +    ALK F+ + K+ +  D + L   ++  A I GDL+ G+Q+H   V    
Sbjct: 356 VGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDLE-GRQVHGLAVKSIS 414

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
            S + ++N+I+ MY KC  L  +  +F+ +  +  VSW AII+   QNG   E L  F  
Sbjct: 415 MSNICVANAILDMYGKCKALAEASDLFDMMERRDAVSWNAIIAACEQNGNEEETLAHFAS 474

Query: 343 MRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
           M   + +  D  T  S+L A     AL   +++H    ++G      V   L+  Y KCG
Sbjct: 475 MIHSRMEP-DDFTYGSVLKACAGRQALNTGMEIHTRIIKSGMGFDSFVGAALVDMYCKCG 533

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
            ++ A  + +     + +VSWN II G+ +    E A   + +M E G  PD+ TY ++L
Sbjct: 534 MIEKADKIHDRTE-QKTMVSWNAIISGFSLLQQSEDAHKFFSRMLEMGVNPDNFTYAAVL 592

Query: 463 NACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGC--VVDLLARAGCLSDASGLAGKLLEG 520
           + C +      G  I  Q+I   K +   + Y C  +VD+ ++ G + D+     +L+  
Sbjct: 593 DTCANLATVGLGKQIHAQII---KQELQSDVYICSTLVDMYSKCGNMQDS-----QLMFE 644

Query: 521 MGPN----IWRALLSGCVLH 536
             PN     W A+L G   H
Sbjct: 645 KAPNRDFVTWNAMLCGYAHH 664



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 134/525 (25%), Positives = 239/525 (45%), Gaps = 52/525 (9%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ L+  Y K   +  A  +FD++  ++VVS++ +I GY+  G                 
Sbjct: 87  SNCLMQMYIKCLYLDYACKVFDKMYLRDVVSYNSIISGYASCG----------------- 129

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFIN 127
                              +++AR       KF      F  +    +VS N++++GF+ 
Sbjct: 130 ------------------EMDIAR-------KF------FYEMPERDVVSWNSVISGFLQ 158

Query: 128 NKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSV 187
           N   ++++ +F      G+  +  ++  V++ C AL    +   +HGL +K G   DV  
Sbjct: 159 NGECRKSIDVFLEMGRCGVGFDRASLAVVLKACGALEECDMGVQVHGLVVKFGFDCDVVT 218

Query: 188 NNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRI 247
            +++L MY+    LD ++ +F E+  K+ +SW+ M+   V  +   + L++F+EM+   +
Sbjct: 219 GSALLGMYAKCKRLDDSLSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGV 278

Query: 248 ICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRS 307
                   +L    A L  L+ GK+LH+  +     S++ +  + + MY+KCG +  ++ 
Sbjct: 279 GVSQSIYASLFRSCAALSALRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQK 338

Query: 308 VFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELA 367
           V + + + SL S+ AII GY ++    +AL  F ++  +     D ITL   L A   + 
Sbjct: 339 VLSSMPKCSLQSYNAIIVGYARSDRGFQALKSF-QLLLKTGLGFDEITLSGALNACASIR 397

Query: 368 ALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
                 Q+HG+A ++       V N ++  Y KC  +  A  +F+ M   RD VSWN II
Sbjct: 398 GDLEGRQVHGLAVKSISMSNICVANAILDMYGKCKALAEASDLFDMME-RRDAVSWNAII 456

Query: 428 YGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKV 487
                NG+ E  LA +  M  +   PD  TY S+L AC      N G+ I  ++I+    
Sbjct: 457 AACEQNGNEEETLAHFASMIHSRMEPDDFTYGSVLKACAGRQALNTGMEIHTRIIKSGMG 516

Query: 488 KPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSG 532
             S      +VD+  + G +  A  +  +  E      W A++SG
Sbjct: 517 FDSFVG-AALVDMYCKCGMIEKADKIHDR-TEQKTMVSWNAIISG 559



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 110/405 (27%), Positives = 189/405 (46%), Gaps = 21/405 (5%)

Query: 133 QAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVL 192
            A ++F  F  +  V N +  + +   C+ L     C++   + ++     DV   NS++
Sbjct: 72  HARMIFCGFEPTTFVSNCLMQMYI--KCLYLDYA--CKVFDKMYLR-----DVVSYNSII 122

Query: 193 DMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTV 252
             Y+   ++D A + F EM  +DV+SW  ++  F+       ++ +F EM +  +  D  
Sbjct: 123 SGYASCGEMDIARKFFYEMPERDVVSWNSVISGFLQNGECRKSIDVFLEMGRCGVGFDRA 182

Query: 253 ALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQI 312
           +L  ++     L +   G Q+H  VV  G   ++   ++++ MY+KC  LD S SVF+++
Sbjct: 183 SLAVVLKACGALEECDMGVQVHGLVVKFGFDCDVVTGSALLGMYAKCKRLDDSLSVFSEL 242

Query: 313 TEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEIC 372
            EK+ VSW+A+I+G VQN    E L  F +M+        SI   S+  +   L+AL + 
Sbjct: 243 PEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSI-YASLFRSCAALSALRLG 301

Query: 373 LQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGV 432
            +LH  A ++ F     V    +  Y+KCG +  A  V   M     + S+N II GY  
Sbjct: 302 KELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMPKC-SLQSYNAIIVGYAR 360

Query: 433 NGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQE 492
           +  G  AL  +  + +TG   D  T    LNAC  A +  D   +  + +    VK    
Sbjct: 361 SDRGFQALKSFQLLLKTGLGFDEITLSGALNAC--ASIRGD---LEGRQVHGLAVKSISM 415

Query: 493 HYGCV----VDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGC 533
              CV    +D+  +   L++AS L   ++E      W A+++ C
Sbjct: 416 SNICVANAILDMYGKCKALAEASDLF-DMMERRDAVSWNAIIAAC 459



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 108/231 (46%), Gaps = 33/231 (14%)

Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISG 326
           L  GKQ HA+++  G +    +SN ++ MY KC  LD +  VF+++  + +VS+ +IISG
Sbjct: 65  LNPGKQAHARMIFCGFEPTTFVSNCLMQMYIKCLYLDYACKVFDKMYLRDVVSYNSIISG 124

Query: 327 Y-------------------------------VQNGCAREALNQFIKMRQEKTDSVDSIT 355
           Y                               +QNG  R++++ F++M +      D  +
Sbjct: 125 YASCGEMDIARKFFYEMPERDVVSWNSVISGFLQNGECRKSIDVFLEMGRCGV-GFDRAS 183

Query: 356 LVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMG 415
           L  +L A G L   ++ +Q+HG+  + GF       + L+  Y+KC  +D +  VF E+ 
Sbjct: 184 LAVVLKACGALEECDMGVQVHGLVVKFGFDCDVVTGSALLGMYAKCKRLDDSLSVFSELP 243

Query: 416 FLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
             ++ VSW+ +I G   N      L L+ +M   G     S Y S+  +C 
Sbjct: 244 -EKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFRSCA 293


>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
 gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
          Length = 538

 Score =  236 bits (603), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 150/492 (30%), Positives = 244/492 (49%), Gaps = 42/492 (8%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F+ +  P     NA+  G+  N+  +  ++LF   +G  ++PN  T   +++ CV + +
Sbjct: 7   VFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKSCVKINA 66

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
               E +H   IK G   +  V  +++DMY+    + AA ++F EM  ++VI+WT M+  
Sbjct: 67  LKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAWTAMING 126

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           ++       A ++F ++   R   D V    +IS      D+ R ++L  ++    + S 
Sbjct: 127 YITCCDLVTARRLF-DLAPER---DIVLWNTMISGYIEAKDVIRARELFDKMPNKDVMS- 181

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
               N+++  Y+  GD+ +   +F ++ E+++ SW A+I GY +NGC  E L+ F +M  
Sbjct: 182 ---WNTVLNGYASNGDVMACERLFEEMPERNVFSWNALIGGYTRNGCFSEVLSAFKRMLV 238

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
           + T   +  TLV++L+A   L AL++   +H  A   G+     V+N L+  Y+KCG V+
Sbjct: 239 DGTVVPNDATLVNVLSACARLGALDLGKWVHVYAESHGYKGNVYVRNALMDMYAKCGVVE 298

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            A  VF+ M   +D++SWNTII G  V+GHG  AL L+  M   GE PD  T++ IL AC
Sbjct: 299 TALDVFKSMDN-KDLISWNTIIGGLAVHGHGADALNLFSHMKIAGENPDGITFIGILCAC 357

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI 525
            H GL  DG   F  M ++  + P  EHYGC+VDLL RAG L+ A     K+       I
Sbjct: 358 THMGLVEDGFSYFKSMTDDYSIVPRIEHYGCIVDLLGRAGLLAHAVDFIRKMPIEADAVI 417

Query: 526 WRALLSGCVLH---------------------------------VGRFQDAEALRSGSQK 552
           W ALL  C ++                                  GR++D   L+   + 
Sbjct: 418 WAALLGACRVYKNVELAELALEKLIEFEPKNPANYVMLSNIYGDFGRWKDVARLKVAMRD 477

Query: 553 KGIIKIPGISFL 564
            G  K+PG S +
Sbjct: 478 TGFKKLPGCSLI 489



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 117/493 (23%), Positives = 206/493 (41%), Gaps = 66/493 (13%)

Query: 21  IKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVA 80
           ++ A  +FD+IPE N   W+ +  GYS N  H+  +  F  M    ++PN FT   +L +
Sbjct: 1   MENAHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKS 60

Query: 81  AAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNF 140
              +  L+    +H  ++K G  +       NP++ +   ++  + +      A  +F  
Sbjct: 61  CVKINALKEGEEVHCFVIKSGFRA-------NPFVAT--TLIDMYASGGAIHAAYRVF-- 109

Query: 141 FRGSGLVPNAVTMLTVIRG----CVALGSRALCELIHGLTIKLGLIL------------- 183
             G  +  N +    +I G    C  + +R L +L     I L   +             
Sbjct: 110 --GEMIERNVIAWTAMINGYITCCDLVTARRLFDLAPERDIVLWNTMISGYIEAKDVIRA 167

Query: 184 ----------DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAG 233
                     DV   N+VL+ Y+   D+ A  ++F EM  ++V SW  ++G +       
Sbjct: 168 RELFDKMPNKDVMSWNTVLNGYASNGDVMACERLFEEMPERNVFSWNALIGGYTRNGCFS 227

Query: 234 DALKIFREMR-KSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSI 292
           + L  F+ M     ++ +   L+N++S  A LG L  GK +H      G +  + + N++
Sbjct: 228 EVLSAFKRMLVDGTVVPNDATLVNVLSACARLGALDLGKWVHVYAESHGYKGNVYVRNAL 287

Query: 293 IAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVD 352
           + MY+KCG ++++  VF  +  K L+SW  II G   +G   +ALN F  M+    ++ D
Sbjct: 288 MDMYAKCGVVETALDVFKSMDNKDLISWNTIIGGLAVHGHGADALNLFSHMKI-AGENPD 346

Query: 353 SITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN------------CLISSYSK 400
            IT + IL           C   H    E GF  ++S+ +            C++    +
Sbjct: 347 GITFIGIL-----------CACTHMGLVEDGFSYFKSMTDDYSIVPRIEHYGCIVDLLGR 395

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
            G +  A     +M    D V W  ++    V  + E A     K+ E  E  + + Y+ 
Sbjct: 396 AGLLAHAVDFIRKMPIEADAVIWAALLGACRVYKNVELAELALEKLIEF-EPKNPANYVM 454

Query: 461 ILNACGHAGLTND 473
           + N  G  G   D
Sbjct: 455 LSNIYGDFGRWKD 467



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 139/307 (45%), Gaps = 47/307 (15%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  D  + + +L+ Y  +G +   E LF+E+PE+NV SW+ +I GY+ NG   + + AF 
Sbjct: 175 PNKDVMSWNTVLNGYASNGDVMACERLFEEMPERNVFSWNALIGGYTRNGCFSEVLSAFK 234

Query: 61  HMMLSG-LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES--------------- 104
            M++ G ++PN  T+V VL A A L  L+L + +H      G +                
Sbjct: 235 RMLVDGTVVPNDATLVNVLSACARLGALDLGKWVHVYAESHGYKGNVYVRNALMDMYAKC 294

Query: 105 -------DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
                  D+F+ + N  L+S N I+ G   +     A+ LF+  + +G  P+ +T + ++
Sbjct: 295 GVVETALDVFKSMDNKDLISWNTIIGGLAVHGHGADALNLFSHMKIAGENPDGITFIGIL 354

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMD-------LDAAIQIFRE 210
             C  +G   L E   G +    +  D S+   + + Y C++D       L  A+   R+
Sbjct: 355 CACTHMG---LVE--DGFSYFKSMTDDYSIVPRI-EHYGCIVDLLGRAGLLAHAVDFIRK 408

Query: 211 MECK-DVISWTRMMG---LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGD 266
           M  + D + W  ++G   ++ + E A  AL+   E              N + ++ I GD
Sbjct: 409 MPIEADAVIWAALLGACRVYKNVELAELALEKLIEFEPKNPA-------NYVMLSNIYGD 461

Query: 267 LKRGKQL 273
             R K +
Sbjct: 462 FGRWKDV 468


>gi|3128231|gb|AAC26711.1| hypothetical protein [Arabidopsis thaliana]
 gi|20197159|gb|AAM14947.1| hypothetical protein [Arabidopsis thaliana]
          Length = 617

 Score =  236 bits (603), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 146/414 (35%), Positives = 224/414 (54%), Gaps = 10/414 (2%)

Query: 100 FGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVL-LFNFFRGSGLVPNAVTMLTVIR 158
           F   S LF   + P   S N ++ G  N     +A L L+   + SGL P+  T   V  
Sbjct: 77  FNYSSFLFSVTEEPNHYSFNYMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFI 136

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C  L    +   +H    K+GL  DV +N+S++ MY+    +  A ++F E+  +D +S
Sbjct: 137 ACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVS 196

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           W  M+  + +  YA DA+ +FR+M +     D   L++++   + LGDL+ G+ L    +
Sbjct: 197 WNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAI 256

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
              +     L + +I+MY KCGDLDS+R VFNQ+ +K  V+WTA+I+ Y QNG + EA  
Sbjct: 257 TKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFK 316

Query: 339 QFIKMRQEKTD-SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
            F +M  EKT  S D+ TL ++L+A G + ALE+  Q+   A E        V   L+  
Sbjct: 317 LFFEM--EKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDM 374

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS- 456
           Y KCG V+ A  VFE M  +++  +WN +I  Y   GH + AL L+ +M+    VP S  
Sbjct: 375 YGKCGRVEEALRVFEAMP-VKNEATWNAMITAYAHQGHAKEALLLFDRMS----VPPSDI 429

Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
           T++ +L+AC HAGL + G   F++M     + P  EHY  ++DLL+RAG L +A
Sbjct: 430 TFIGVLSACVHAGLVHQGCRYFHEMSSMFGLVPKIEHYTNIIDLLSRAGMLDEA 483



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 111/412 (26%), Positives = 195/412 (47%), Gaps = 32/412 (7%)

Query: 27  LFDEIPEKNVVSWSIVIHGYSINGF--HEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGL 84
           LF    E N  S++ +I G + N +  HE ++  +  M  SGL P+ FT   V +A A L
Sbjct: 83  LFSVTEEPNHYSFNYMIRGLT-NTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKL 141

Query: 85  QNLELARSIHGLMVKFGLESD----------------------LFEGLKNPYLVSCNAIV 122
           + + + RS+H  + K GLE D                      LF+ +     VS N+++
Sbjct: 142 EEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMI 201

Query: 123 AGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLI 182
           +G+      + A+ LF      G  P+  T+++++  C  LG      L+  + I   + 
Sbjct: 202 SGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIG 261

Query: 183 LDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREM 242
           L   + + ++ MY    DLD+A ++F +M  KD ++WT M+ ++     + +A K+F EM
Sbjct: 262 LSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEM 321

Query: 243 RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDL 302
            K+ +  D   L  ++S    +G L+ GKQ+        LQ  + ++  ++ MY KCG +
Sbjct: 322 EKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRV 381

Query: 303 DSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTA 362
           + +  VF  +  K+  +W A+I+ Y   G A+EAL  F +M    +D    IT + +L+A
Sbjct: 382 EEALRVFEAMPVKNEATWNAMITAYAHQGHAKEALLLFDRMSVPPSD----ITFIGVLSA 437

Query: 363 SGELAAL-EICLQLHGIAFEAGF-PRYRSVQNCLISSYSKCGNVDLAYIVFE 412
                 + + C   H ++   G  P+     N +I   S+ G +D A+   E
Sbjct: 438 CVHAGLVHQGCRYFHEMSSMFGLVPKIEHYTN-IIDLLSRAGMLDEAWEFME 488



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 106/448 (23%), Positives = 197/448 (43%), Gaps = 41/448 (9%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + +  L+  Y K G++  A  LFDEI E++ VSW+ +I GYS  G+ + +M  F  M 
Sbjct: 162 DVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDAMDLFRKME 221

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMV--KFGLESDLFEGLKNPY------- 114
             G  P+  T+V +L A + L +L   R +  + +  K GL + L   L + Y       
Sbjct: 222 EEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLISMYGKCGDLD 281

Query: 115 -------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                         V+  A++  +  N    +A  LF     +G+ P+A T+ TV+  C 
Sbjct: 282 SARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACG 341

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
           ++G+  L + I     +L L  ++ V   ++DMY     ++ A+++F  M  K+  +W  
Sbjct: 342 SVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNEATWNA 401

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG-KQLHAQVVLG 280
           M+  +    +A +AL +F  M    +    +  + ++S     G + +G +  H    + 
Sbjct: 402 MITAYAHQGHAKEALLLFDRM---SVPPSDITFIGVLSACVHAGLVHQGCRYFHEMSSMF 458

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN----GCAREA 336
           GL  ++    +II + S+ G LD +     +   K      A I G            +A
Sbjct: 459 GLVPKIEHYTNIIDLLSRAGMLDEAWEFMERFPGKPDEIMLAAILGACHKRKDVAIREKA 518

Query: 337 LNQFIKMRQEKT--DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
           +   ++M++ K   + V S  +++ +    E A +   ++  G+    G   +  ++  L
Sbjct: 519 MRMLMEMKEAKNAGNYVISSNVLADMKMWDESAKMRALMRDRGVVKTPGCS-WIEIEGEL 577

Query: 395 I-----SSYSKCGNVD---LAYIVFEEM 414
           +     S Y +CG  D   L  ++ EEM
Sbjct: 578 MEFLAGSDYLQCGREDSGSLFDLLVEEM 605



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 112/240 (46%), Gaps = 13/240 (5%)

Query: 239 FREMRKSRIICDTVALLN-LISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYS 297
           F E R+  +  D + LL   ISVN +       +Q+ AQ++L  ++      N +I    
Sbjct: 24  FEEARRGDLERDFLFLLKKCISVNQL-------RQIQAQMLLHSVEK----PNFLIPKAV 72

Query: 298 KCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLV 357
           + GD + S  +F+   E +  S+  +I G        EA     +  +      D  T  
Sbjct: 73  ELGDFNYSSFLFSVTEEPNHYSFNYMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYN 132

Query: 358 SILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFL 417
            +  A  +L  + +   +H   F+ G  R   + + LI  Y+KCG V  A  +F+E+   
Sbjct: 133 FVFIACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEIT-E 191

Query: 418 RDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVI 477
           RD VSWN++I GY   G+ + A+ L+ KM E G  PD  T +S+L AC H G    G ++
Sbjct: 192 RDTVSWNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLL 251


>gi|15233292|ref|NP_188854.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273371|sp|Q9LIE7.1|PP246_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22150, chloroplastic; Flags: Precursor
 gi|11994734|dbj|BAB03063.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|110739449|dbj|BAF01634.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643073|gb|AEE76594.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 820

 Score =  236 bits (603), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 166/549 (30%), Positives = 281/549 (51%), Gaps = 34/549 (6%)

Query: 27  LFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQN 86
           +FD +  KNVV+W+ +I  Y   G + ++ + F  MM   + P+  + V V  A +  ++
Sbjct: 170 VFDNMRRKNVVAWNTLISWYVKTGRNAEACRQFGIMMRMEVKPSPVSFVNVFPAVSISRS 229

Query: 87  LELARSIHGLMVKFGLE--SDLF---------------EGLKNPYLVSC--------NAI 121
           ++ A   +GLM+K G E   DLF               E  +  +  SC        N +
Sbjct: 230 IKKANVFYGLMLKLGDEYVKDLFVVSSAISMYAELGDIESSRRVF-DSCVERNIEVWNTM 288

Query: 122 VAGFINNKLFQQAVLLFNFFRGSG-LVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLG 180
           +  ++ N    +++ LF    GS  +V + VT L       AL    L    HG   K  
Sbjct: 289 IGVYVQNDCLVESIELFLEAIGSKEIVSDEVTYLLAASAVSALQQVELGRQFHGFVSKNF 348

Query: 181 LILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFR 240
             L + + NS++ MYS    +  +  +F  M  +DV+SW  M+  FV      + L +  
Sbjct: 349 RELPIVIVNSLMVMYSRCGSVHKSFGVFLSMRERDVVSWNTMISAFVQNGLDDEGLMLVY 408

Query: 241 EMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCG 300
           EM+K     D + +  L+S  + L + + GKQ HA ++  G+Q E  +++ +I MYSK G
Sbjct: 409 EMQKQGFKIDYITVTALLSAASNLRNKEIGKQTHAFLIRQGIQFE-GMNSYLIDMYSKSG 467

Query: 301 DLDSSRSVF--NQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVS 358
            +  S+ +F  +   E+   +W ++ISGY QNG   +    F KM ++     +++T+ S
Sbjct: 468 LIRISQKLFEGSGYAERDQATWNSMISGYTQNGHTEKTFLVFRKMLEQNIRP-NAVTVAS 526

Query: 359 ILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLR 418
           IL A  ++ ++++  QLHG +      +   V + L+  YSK G +  A  +F +    R
Sbjct: 527 ILPACSQIGSVDLGKQLHGFSIRQYLDQNVFVASALVDMYSKAGAIKYAEDMFSQTK-ER 585

Query: 419 DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIF 478
           + V++ T+I GYG +G GE A++L+  M E+G  PD+ T++++L+AC ++GL ++GL IF
Sbjct: 586 NSVTYTTMILGYGQHGMGERAISLFLSMQESGIKPDAITFVAVLSACSYSGLIDEGLKIF 645

Query: 479 NQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL-LEGMGPNIWRALLSGCVLHV 537
            +M E   ++PS EHY C+ D+L R G +++A      L  EG    +W +LL  C LH 
Sbjct: 646 EEMREVYNIQPSSEHYCCITDMLGRVGRVNEAYEFVKGLGEEGNIAELWGSLLGSCKLH- 704

Query: 538 GRFQDAEAL 546
           G  + AE +
Sbjct: 705 GELELAETV 713



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 142/559 (25%), Positives = 263/559 (47%), Gaps = 47/559 (8%)

Query: 1   PCIDPYNSS--KLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKA 58
           P + P   S    LS   + G  + A  LFD IP+   V W+ +I G+  N    +++  
Sbjct: 33  PTLTPQTPSIRSRLSKICQDGNPQLARQLFDAIPKPTTVLWNTIIIGFICNNLPHEALLF 92

Query: 59  FSHMMLSGLLPN--SFTMVGVLVAAAGLQNLELARSIHGLMVK----------------- 99
           +S M  +    N  ++T    L A A  +NL+  +++H  +++                 
Sbjct: 93  YSRMKKTAPFTNCDAYTYSSTLKACAETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMY 152

Query: 100 -----------FGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVP 148
                      + +   +F+ ++   +V+ N +++ ++      +A   F       + P
Sbjct: 153 VSCLNAPDCFEYDVVRKVFDNMRRKNVVAWNTLISWYVKTGRNAEACRQFGIMMRMEVKP 212

Query: 149 NAVTMLTVIRGCVALGSRALCELIHGLTIKLG--LILDVSVNNSVLDMYSCLMDLDAAIQ 206
           + V+ + V        S     + +GL +KLG   + D+ V +S + MY+ L D++++ +
Sbjct: 213 SPVSFVNVFPAVSISRSIKKANVFYGLMLKLGDEYVKDLFVVSSAISMYAELGDIESSRR 272

Query: 207 IFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSR-IICDTVALLNLISVNAILG 265
           +F     +++  W  M+G++V  +   +++++F E   S+ I+ D V  L   S  + L 
Sbjct: 273 VFDSCVERNIEVWNTMIGVYVQNDCLVESIELFLEAIGSKEIVSDEVTYLLAASAVSALQ 332

Query: 266 DLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIIS 325
            ++ G+Q H  V     +  + + NS++ MYS+CG +  S  VF  + E+ +VSW  +IS
Sbjct: 333 QVELGRQFHGFVSKNFRELPIVIVNSLMVMYSRCGSVHKSFGVFLSMRERDVVSWNTMIS 392

Query: 326 GYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFP 385
            +VQNG   E L    +M Q++   +D IT+ ++L+A+  L   EI  Q H      G  
Sbjct: 393 AFVQNGLDDEGLMLVYEM-QKQGFKIDYITVTALLSAASNLRNKEIGKQTHAFLIRQGI- 450

Query: 386 RYRSVQNCLISSYSKCGNVDLAYIVFEEMGFL-RDVVSWNTIIYGYGVNGHGETALALYH 444
           ++  + + LI  YSK G + ++  +FE  G+  RD  +WN++I GY  NGH E    ++ 
Sbjct: 451 QFEGMNSYLIDMYSKSGLIRISQKLFEGSGYAERDQATWNSMISGYTQNGHTEKTFLVFR 510

Query: 445 KMTETGEVPDSSTYLSILNACGHAGLTNDGLVI----FNQMIEENKVKPSQEHYGCVVDL 500
           KM E    P++ T  SIL AC   G  + G  +      Q +++N    S      +VD+
Sbjct: 511 KMLEQNIRPNAVTVASILPACSQIGSVDLGKQLHGFSIRQYLDQNVFVAS-----ALVDM 565

Query: 501 LARAGCLSDASGLAGKLLE 519
            ++AG +  A  +  +  E
Sbjct: 566 YSKAGAIKYAEDMFSQTKE 584



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/294 (22%), Positives = 144/294 (48%), Gaps = 31/294 (10%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+  Y + G + ++  +F  + E++VVSW+ +I  +  NG  ++ +     M   G   +
Sbjct: 359 LMVMYSRCGSVHKSFGVFLSMRERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFKID 418

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLV-------------- 116
             T+  +L AA+ L+N E+ +  H  +++ G++   FEG+ N YL+              
Sbjct: 419 YITVTALLSAASNLRNKEIGKQTHAFLIRQGIQ---FEGM-NSYLIDMYSKSGLIRISQK 474

Query: 117 -------------SCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
                        + N++++G+  N   ++  L+F       + PNAVT+ +++  C  +
Sbjct: 475 LFEGSGYAERDQATWNSMISGYTQNGHTEKTFLVFRKMLEQNIRPNAVTVASILPACSQI 534

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
           GS  L + +HG +I+  L  +V V ++++DMYS    +  A  +F + + ++ +++T M+
Sbjct: 535 GSVDLGKQLHGFSIRQYLDQNVFVASALVDMYSKAGAIKYAEDMFSQTKERNSVTYTTMI 594

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
             +        A+ +F  M++S I  D +  + ++S  +  G +  G ++  ++
Sbjct: 595 LGYGQHGMGERAISLFLSMQESGIKPDAITFVAVLSACSYSGLIDEGLKIFEEM 648



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 7/96 (7%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           +S L+  Y K+G IK AE++F +  E+N V+++ +I GY  +G  E+++  F  M  SG+
Sbjct: 559 ASALVDMYSKAGAIKYAEDMFSQTKERNSVTYTTMILGYGQHGMGERAISLFLSMQESGI 618

Query: 68  LPNSFTMVGVLVAAA-------GLQNLELARSIHGL 96
            P++ T V VL A +       GL+  E  R ++ +
Sbjct: 619 KPDAITFVAVLSACSYSGLIDEGLKIFEEMREVYNI 654


>gi|297735121|emb|CBI17483.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score =  236 bits (603), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 147/502 (29%), Positives = 246/502 (49%), Gaps = 44/502 (8%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFR-GSGLVPNAVTMLTVIRGCVALG 164
           +F+ +     +S   +++G++N     +A+LLF   R  SGL  +   +    + C    
Sbjct: 78  MFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILSLAHKACGLNS 137

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
                EL+HG  +K GL+  V V +++LDMY+    +    ++F EM  ++V+SWT ++ 
Sbjct: 138 DVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIIT 197

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
             V   Y  +AL  F EM +SR+  D+      +   A  G L  G+++HAQ +  G   
Sbjct: 198 GLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDV 257

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
              ++N++  MY+KCG L+   ++F +++ + +VSWT II+  VQ G    A+  FI+MR
Sbjct: 258 SSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMR 317

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
           +    S +  T  ++++    LA +E   QLH +    G     SV+N +++ Y+KCG +
Sbjct: 318 ESDV-SPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQL 376

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
             + ++F EM   RD+VSW+TII GY   GH   A  L   M   G  P      S+L+A
Sbjct: 377 TSSSVIFHEMT-RRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTEFALASVLSA 435

Query: 465 CGHAGLTNDGLVIFNQMIE--------ENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK 516
           CG+  +   G  +   ++         + ++ PS+EHYGC++DLL RAG LSDA  +   
Sbjct: 436 CGNMAILEHGKQLHAYVLSIGLEHTAMKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEA 495

Query: 517 LLEGMGPNIWRALLSGCVLH---------------------------------VGRFQDA 543
           +       +W  LL  C +H                                  G++++A
Sbjct: 496 MPFHRDDVVWSTLLRACRVHGDVERGRRTAERILQLEPNCAGTHITLANIYASKGKWREA 555

Query: 544 EALRSGSQKKGIIKIPGISFLN 565
             +R   + KG+IK PG S++ 
Sbjct: 556 ADIRKLMKSKGVIKEPGWSWIK 577



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 135/467 (28%), Positives = 225/467 (48%), Gaps = 35/467 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D   S+K L    K+G +  A  +FD++ +K+ +SW+ +I GY       +++  F +M 
Sbjct: 55  DLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMR 114

Query: 64  L-SGLLPNSFTMVGVLVAAAGLQ-NLELARSIHGLMVKFGLESDLFEG--LKNPY----- 114
           + SGL  + F ++ +   A GL  ++     +HG  VK GL + +F G  L + Y     
Sbjct: 115 VESGLRIDPF-ILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGK 173

Query: 115 ---------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                          +VS  AI+ G +     ++A++ F+    S +  ++ T    ++ 
Sbjct: 174 IFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKA 233

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C   G+      IH   +K G  +   V N++  MY+    L+  + +F +M  +DV+SW
Sbjct: 234 CADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSW 293

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           T ++   V       A++ F  MR+S +  +      +IS  A L  ++ G+QLHA ++ 
Sbjct: 294 TTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILH 353

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            GL + L + NSI+ MY+KCG L SS  +F+++T + +VSW+ II+GY Q G   EA   
Sbjct: 354 LGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFEL 413

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHG----IAFEAGFPRY-----RSV 390
              MR E     +   L S+L+A G +A LE   QLH     I  E    +Y     +  
Sbjct: 414 LSWMRMEGPKPTE-FALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMKYQISPSKEH 472

Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGE 437
             C+I    + G +  A  + E M F RD V W+T++    V+G  E
Sbjct: 473 YGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRVHGDVE 519



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/202 (32%), Positives = 100/202 (49%), Gaps = 1/202 (0%)

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
           Q++L  SN  +    K G L ++R +F+++++K  +SWT +ISGYV    + EAL  F  
Sbjct: 53  QTDLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKN 112

Query: 343 MRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
           MR E    +D   L     A G  + +     LHG A + G      V + L+  Y+K G
Sbjct: 113 MRVESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNG 172

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
            +     VF EM  +R+VVSW  II G    G+ + AL  + +M  +    DS T+   L
Sbjct: 173 KIFEGRRVFHEMP-MRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIAL 231

Query: 463 NACGHAGLTNDGLVIFNQMIEE 484
            AC  +G  N G  I  Q +++
Sbjct: 232 KACADSGALNYGREIHAQAMKK 253



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/304 (22%), Positives = 127/304 (41%), Gaps = 59/304 (19%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +  + ++ L + Y K GK++    LF+++  ++VVSW+ +I      G  E +++AF  M
Sbjct: 257 VSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRM 316

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------- 106
             S + PN +T   V+   A L  +E    +H L++  GL + L                
Sbjct: 317 RESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQL 376

Query: 107 ------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                 F  +    +VS + I+AG+       +A  L ++ R  G  P    + +V+  C
Sbjct: 377 TSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTEFALASVLSAC 436

Query: 161 VALGSRALCE---LIHGLTIKLGL---ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
              G+ A+ E    +H   + +GL    +   ++ S  + Y C++DL           C+
Sbjct: 437 ---GNMAILEHGKQLHAYVLSIGLEHTAMKYQISPSK-EHYGCMIDL----------LCR 482

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
                    G   D E+  +A+   R         D V    L+    + GD++RG++  
Sbjct: 483 --------AGRLSDAEHMIEAMPFHR---------DDVVWSTLLRACRVHGDVERGRRTA 525

Query: 275 AQVV 278
            +++
Sbjct: 526 ERIL 529


>gi|297818116|ref|XP_002876941.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297322779|gb|EFH53200.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 652

 Score =  236 bits (603), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 157/537 (29%), Positives = 260/537 (48%), Gaps = 35/537 (6%)

Query: 27  LFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQN 86
           LFDE+P+++ VSW+ +I GY+  G  E S   F+ M   G   + ++   +L   A  + 
Sbjct: 3   LFDEMPQRDSVSWNTMISGYTSCGKLENSWCLFTDMKRCGCYVDGYSFSRLLKGIASAKR 62

Query: 87  LELARSIHGLMVKFGLESDLFEG----------------------LKNPYLVSCNAIVAG 124
            +L   +HGL+VK G E +++ G                      +  P  VS NA++AG
Sbjct: 63  FDLGEQVHGLVVKGGYECNVYVGSSLVDMYAKCERVEDAFGAFMEILEPNSVSWNALIAG 122

Query: 125 FINNKLFQQAVLLFNFFRGSGLVPNAVTML--TVIRGCVALGSRALCEL---IHGLTIKL 179
           F+  +  + A  L         +  AVTM   T       L     C L   +H   +KL
Sbjct: 123 FVQVRDTKTAFWLLGLME----MKAAVTMDDGTFAPLLTLLDDPMFCNLLKQVHAKVLKL 178

Query: 180 GLILDVSVNNSVLDMYSCLMDLDAAIQIFREME-CKDVISWTRMMGLFVDFEYAGDALKI 238
           GL  ++++ N+++  Y+    +  A ++F  +   KD+ISW  M+      E    A ++
Sbjct: 179 GLEHEITICNAMISSYANCGLVSDAKRVFDGLGGSKDLISWNSMIAGLSKHEQKESAFEL 238

Query: 239 FREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSK 298
           F EM ++ I  D      ++S  +       GK LH  V+  GL+    +SN++I+MY +
Sbjct: 239 FTEMHRNWIETDIYTYTGIVSACSGEEHQSFGKSLHGLVIKKGLEQVTSVSNALISMYIQ 298

Query: 299 --CGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITL 356
              G +  + S+F  +  K LVSW +I++G+ QNG + +A+  F  +R    + VD    
Sbjct: 299 FPTGVMKDALSLFESLKPKDLVSWNSIMTGFSQNGLSEDAVKFFRYLRSSNIE-VDDYAF 357

Query: 357 VSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGF 416
            ++L +  +LA L++  Q H +A ++ F     V + LI  YSKCG ++ A   FE++  
Sbjct: 358 SAVLRSCSDLATLQLGQQTHALATKSSFESNEFVTSSLILMYSKCGVIENARKCFEQISS 417

Query: 417 LRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLV 476
             + ++WN +I GY  +G G+ +L L+ +M       D  T+ +IL AC H GL  +GL 
Sbjct: 418 KHNTIAWNAMILGYAQHGSGQVSLDLFSQMCNQNVKLDHVTFTAILTACSHTGLIQEGLE 477

Query: 477 IFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGC 533
           + N M    K++P  EHY   VDLL RAG ++    L   +     P + +  L  C
Sbjct: 478 LLNSMEPVYKIQPRMEHYAAAVDLLGRAGLVNKVKELIESMPLNPDPMVLKTFLGVC 534



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 130/261 (49%)

Query: 205 IQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAIL 264
           +++F EM  +D +SW  M+  +       ++  +F +M++     D  +   L+   A  
Sbjct: 1   MRLFDEMPQRDSVSWNTMISGYTSCGKLENSWCLFTDMKRCGCYVDGYSFSRLLKGIASA 60

Query: 265 GDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAII 324
                G+Q+H  VV GG +  + + +S++ MY+KC  ++ +   F +I E + VSW A+I
Sbjct: 61  KRFDLGEQVHGLVVKGGYECNVYVGSSLVDMYAKCERVEDAFGAFMEILEPNSVSWNALI 120

Query: 325 SGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGF 384
           +G+VQ    + A      M  +   ++D  T   +LT   +     +  Q+H    + G 
Sbjct: 121 AGFVQVRDTKTAFWLLGLMEMKAAVTMDDGTFAPLLTLLDDPMFCNLLKQVHAKVLKLGL 180

Query: 385 PRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH 444
               ++ N +ISSY+ CG V  A  VF+ +G  +D++SWN++I G   +   E+A  L+ 
Sbjct: 181 EHEITICNAMISSYANCGLVSDAKRVFDGLGGSKDLISWNSMIAGLSKHEQKESAFELFT 240

Query: 445 KMTETGEVPDSSTYLSILNAC 465
           +M       D  TY  I++AC
Sbjct: 241 EMHRNWIETDIYTYTGIVSAC 261



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 86/182 (47%), Gaps = 25/182 (13%)

Query: 8   SSKLLSNY--FKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           S+ L+S Y  F +G +K+A +LF+ +  K++VSW+ ++ G+S NG  E ++K F ++  S
Sbjct: 289 SNALISMYIQFPTGVMKDALSLFESLKPKDLVSWNSIMTGFSQNGLSEDAVKFFRYLRSS 348

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-------------------- 105
            +  + +    VL + + L  L+L +  H L  K   ES+                    
Sbjct: 349 NIEVDDYAFSAVLRSCSDLATLQLGQQTHALATKSSFESNEFVTSSLILMYSKCGVIENA 408

Query: 106 --LFEGLKNPY-LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA 162
              FE + + +  ++ NA++ G+  +   Q ++ LF+      +  + VT   ++  C  
Sbjct: 409 RKCFEQISSKHNTIAWNAMILGYAQHGSGQVSLDLFSQMCNQNVKLDHVTFTAILTACSH 468

Query: 163 LG 164
            G
Sbjct: 469 TG 470


>gi|413918573|gb|AFW58505.1| hypothetical protein ZEAMMB73_474993 [Zea mays]
          Length = 773

 Score =  236 bits (603), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 167/562 (29%), Positives = 283/562 (50%), Gaps = 39/562 (6%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM-LSG 66
           +S L+  Y + G +++A  +F+E+PE++VV+W+ VI G   NG   + ++    M+ L+G
Sbjct: 153 ASSLVYMYARCGNVRDAVKVFEEMPERDVVAWTAVISGCVRNGESGEGLRYLVEMVRLAG 212

Query: 67  ---LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
              + PNS TM   L A   L  L   R +HG +VK G+                     
Sbjct: 213 DGSVRPNSRTMESGLEACGVLDELNSGRCLHGYVVKVGIGDSPMVISALFSMYSKCYSTE 272

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               LF  L    +VS  +++  +    L  +A+ LF     SGL P+ + +  V+ G  
Sbjct: 273 DACALFLELPEKDVVSWTSLIGIYCRRGLITEAMELFQQMMESGLQPDEILVSCVLSGLG 332

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
             G+    +  H +  K      V + N+++ MY     +D+A ++FR +  +D  SW  
Sbjct: 333 NNGNVHGGKTFHAVITKRNFGDSVLIGNALISMYGKFEMVDSAGRVFRLLHQRDADSWNL 392

Query: 222 MMGLFVDFEYAG---DALKIFREMR---KSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
           M+   V +  AG     L+++REM+   K    C   +L++ IS  + L +L+ G+  H 
Sbjct: 393 MV---VGYCKAGCDVKCLELYREMQLRDKYEFWCVADSLVSAISSCSRLAELRLGRSAHC 449

Query: 276 QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK-SLVSWTAIISGYVQNGCAR 334
             +   L  +  ++N +I MY +CG  D +  +F     K  +V+W  +IS Y   G + 
Sbjct: 450 YSIKHLLDEDSSVANVLIGMYGRCGKFDHACKIFGLAKLKGDVVTWNTLISSYAHLGHSN 509

Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
            A++ + +M  E   + +S TL+++++A   L ALE   ++H    E G+    S+   L
Sbjct: 510 AAMSLYDQMLIEGL-TPNSTTLITVISACANLVALERGEKIHSYVKEMGWDYDVSINTAL 568

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           I  Y+KCG + +A  +F+ M    DVV+WN +I GYG++G  + AL L+ KM      P+
Sbjct: 569 IDMYAKCGQLGIARRIFDSM-LQHDVVAWNVMISGYGMHGEAKQALELFGKMEGGSIKPN 627

Query: 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLA 514
             T+L+IL+A  H+GL  +G  +F +M  +  ++P+ +HY C+VDLL ++G L +A  + 
Sbjct: 628 GVTFLAILSALCHSGLLEEGRKVFTRM-GKYSLEPNLKHYACMVDLLGKSGHLQEAEDMV 686

Query: 515 GKLLEGMGPNIWRALLSGCVLH 536
             +       IW  LLS C LH
Sbjct: 687 LAMPIEPDGGIWGTLLSACKLH 708



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 151/595 (25%), Positives = 274/595 (46%), Gaps = 42/595 (7%)

Query: 5   PYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML 64
           P  ++KL+S Y  +G+   A   F   P  +   W+ +I  +        ++ A   M+ 
Sbjct: 45  PDLAAKLVSAYSSAGRPGLAALAFSASPRPDAFLWNSLIRTHHCASDFVAALSAHRRMLA 104

Query: 65  SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL---ESD---------------- 105
           SG  P+ FT      A+A L  L +  ++H   V++GL   + D                
Sbjct: 105 SGARPSPFTAPLAASASAELGALGVGAAVHAYCVRYGLLVGDGDSVAVASSLVYMYARCG 164

Query: 106 -------LFEGLKNPYLVSCNAIVAGFINNKLFQQAV-LLFNFFR--GSGLV-PNAVTML 154
                  +FE +    +V+  A+++G + N    + +  L    R  G G V PN+ TM 
Sbjct: 165 NVRDAVKVFEEMPERDVVAWTAVISGCVRNGESGEGLRYLVEMVRLAGDGSVRPNSRTME 224

Query: 155 TVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
           + +  C  L        +HG  +K+G+     V +++  MYS     + A  +F E+  K
Sbjct: 225 SGLEACGVLDELNSGRCLHGYVVKVGIGDSPMVISALFSMYSKCYSTEDACALFLELPEK 284

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
           DV+SWT ++G++       +A+++F++M +S +  D + +  ++S     G++  GK  H
Sbjct: 285 DVVSWTSLIGIYCRRGLITEAMELFQQMMESGLQPDEILVSCVLSGLGNNGNVHGGKTFH 344

Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
           A +        + + N++I+MY K   +DS+  VF  + ++   SW  ++ GY + GC  
Sbjct: 345 AVITKRNFGDSVLIGNALISMYGKFEMVDSAGRVFRLLHQRDADSWNLMVVGYCKAGCDV 404

Query: 335 EALNQF--IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN 392
           + L  +  +++R +      + +LVS +++   LA L +    H  + +       SV N
Sbjct: 405 KCLELYREMQLRDKYEFWCVADSLVSAISSCSRLAELRLGRSAHCYSIKHLLDEDSSVAN 464

Query: 393 CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV 452
            LI  Y +CG  D A  +F       DVV+WNT+I  Y   GH   A++LY +M   G  
Sbjct: 465 VLIGMYGRCGKFDHACKIFGLAKLKGDVVTWNTLISSYAHLGHSNAAMSLYDQMLIEGLT 524

Query: 453 PDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASG 512
           P+S+T +++++AC +      G  I +  ++E            ++D+ A+ G L    G
Sbjct: 525 PNSTTLITVISACANLVALERGEKI-HSYVKEMGWDYDVSINTALIDMYAKCGQL----G 579

Query: 513 LAGKLLEGMGPN---IWRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFL 564
           +A ++ + M  +    W  ++SG  +H    Q  E    G  + G IK  G++FL
Sbjct: 580 IARRIFDSMLQHDVVAWNVMISGYGMHGEAKQALELF--GKMEGGSIKPNGVTFL 632



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 93/222 (41%), Gaps = 14/222 (6%)

Query: 272 QLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNG 331
           ++HA  V  GL     L+  +++ YS  G    +   F+         W ++I     + 
Sbjct: 31  RVHALAVTSGLYQRPDLAAKLVSAYSSAGRPGLAALAFSASPRPDAFLWNSLIR---THH 87

Query: 332 CAREALNQFIKMRQEKTDSVDSITLVSIL--TASGELAALEICLQLHGIAFEAGF----P 385
           CA + +      R+            + L  +AS EL AL +   +H      G      
Sbjct: 88  CASDFVAALSAHRRMLASGARPSPFTAPLAASASAELGALGVGAAVHAYCVRYGLLVGDG 147

Query: 386 RYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYG---YGVNGHGETALAL 442
              +V + L+  Y++CGNV  A  VFEEM   RDVV+W  +I G    G +G G   L  
Sbjct: 148 DSVAVASSLVYMYARCGNVRDAVKVFEEMPE-RDVVAWTAVISGCVRNGESGEGLRYLVE 206

Query: 443 YHKMTETGEV-PDSSTYLSILNACGHAGLTNDGLVIFNQMIE 483
             ++   G V P+S T  S L ACG     N G  +   +++
Sbjct: 207 MVRLAGDGSVRPNSRTMESGLEACGVLDELNSGRCLHGYVVK 248



 Score = 38.9 bits (89), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 67/168 (39%), Gaps = 11/168 (6%)

Query: 373 LQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGV 432
           L++H +A  +G  +   +   L+S+YS  G   LA + F       D   WN++I  +  
Sbjct: 30  LRVHALAVTSGLYQRPDLAAKLVSAYSSAGRPGLAALAFSA-SPRPDAFLWNSLIRTHHC 88

Query: 433 NGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQE 492
                 AL+ + +M  +G  P   T     +A    G    G  +    +    +    +
Sbjct: 89  ASDFVAALSAHRRMLASGARPSPFTAPLAASASAELGALGVGAAVHAYCVRYGLLVGDGD 148

Query: 493 HYGC---VVDLLARAGCLSDASGLAGKLLEGMGPN---IWRALLSGCV 534
                  +V + AR G + DA     K+ E M       W A++SGCV
Sbjct: 149 SVAVASSLVYMYARCGNVRDAV----KVFEEMPERDVVAWTAVISGCV 192


>gi|224065397|ref|XP_002301797.1| predicted protein [Populus trichocarpa]
 gi|222843523|gb|EEE81070.1| predicted protein [Populus trichocarpa]
          Length = 602

 Score =  236 bits (603), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 149/430 (34%), Positives = 230/430 (53%), Gaps = 6/430 (1%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           LF+ L    + + NA++  +       + + L++     G  P++ T    I+   +L  
Sbjct: 62  LFDKLPQRGVDAWNAMIVAYSRRYHLTEVLNLYHQMVNEGGKPDSSTFTVAIKASSSLKD 121

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
               E I    +  G   DV V +SVL++Y     +D A  +F +M  +DV+ W  M+  
Sbjct: 122 LEAGERIWRRAVDFGYGCDVFVGSSVLNLYVKCGKIDEAKLVFDKMVKRDVVCWATMITG 181

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG-LQS 284
            V      +A+ +FR MRK  I  D V +L L+   A LG+LK G  +H   V    L  
Sbjct: 182 LVQNGNVLEAVDMFRRMRKEGIEGDGVLMLGLVQACANLGELKLGLSVHGHAVRREMLMD 241

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           ++ L  S++ MY+K GDL+ +  VF Q+  K+ VSW A+ISG+ QNG A  AL+  ++M 
Sbjct: 242 DVILQTSLVDMYAKIGDLELASRVFEQMPRKNAVSWGALISGFAQNGFAEYALDLLVEM- 300

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHG-IAFEAGFPRYRSVQNCLISSYSKCGN 403
           Q      D+  LVS L A  ++  L++   +HG I    GF     +   LI  Y+KCG+
Sbjct: 301 QSLEFKPDTAVLVSALLACSQVGHLKLGKSIHGYIVRRLGFELV--LGTALIDMYAKCGS 358

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           +  A+ +F+ +   RDV+ WNT+I  YG++G G+  L+L+ KM E    PD +T+ S+L+
Sbjct: 359 LSCAHAIFDRVDS-RDVILWNTMIASYGIHGDGKEVLSLFLKMKEANISPDHATFASLLS 417

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
           A  H+G  + G   FN M+ E K+ PS++HY C+VDL +RAG + +A  L   +    G 
Sbjct: 418 ALSHSGQVDVGQYWFNAMVNECKIPPSEKHYACMVDLFSRAGRVEEAYQLIESMNTEPGL 477

Query: 524 NIWRALLSGC 533
            IW ALLSGC
Sbjct: 478 AIWVALLSGC 487



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 120/443 (27%), Positives = 220/443 (49%), Gaps = 26/443 (5%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           ++++Y + G I  A +LFD++P++ V +W+ +I  YS      + +  +  M+  G  P+
Sbjct: 46  VIASYARIGGITSARHLFDKLPQRGVDAWNAMIVAYSRRYHLTEVLNLYHQMVNEGGKPD 105

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPYL------------- 115
           S T    + A++ L++LE    I    V FG   D+F G  + N Y+             
Sbjct: 106 SSTFTVAIKASSSLKDLEAGERIWRRAVDFGYGCDVFVGSSVLNLYVKCGKIDEAKLVFD 165

Query: 116 ------VSCNA-IVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
                 V C A ++ G + N    +AV +F   R  G+  + V ML +++ C  LG   L
Sbjct: 166 KMVKRDVVCWATMITGLVQNGNVLEAVDMFRRMRKEGIEGDGVLMLGLVQACANLGELKL 225

Query: 169 CELIHGLTIKLGLIL-DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
              +HG  ++  +++ DV +  S++DMY+ + DL+ A ++F +M  K+ +SW  ++  F 
Sbjct: 226 GLSVHGHAVRREMLMDDVILQTSLVDMYAKIGDLELASRVFEQMPRKNAVSWGALISGFA 285

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
              +A  AL +  EM+      DT  L++ +   + +G LK GK +H  +V   L  EL 
Sbjct: 286 QNGFAEYALDLLVEMQSLEFKPDTAVLVSALLACSQVGHLKLGKSIHGYIV-RRLGFELV 344

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
           L  ++I MY+KCG L  + ++F+++  + ++ W  +I+ Y  +G  +E L+ F+KM+ E 
Sbjct: 345 LGTALIDMYAKCGSLSCAHAIFDRVDSRDVILWNTMIASYGIHGDGKEVLSLFLKMK-EA 403

Query: 348 TDSVDSITLVSILTASGELAALEI-CLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
             S D  T  S+L+A      +++     + +  E   P       C++  +S+ G V+ 
Sbjct: 404 NISPDHATFASLLSALSHSGQVDVGQYWFNAMVNECKIPPSEKHYACMVDLFSRAGRVEE 463

Query: 407 AYIVFEEMGFLRDVVSWNTIIYG 429
           AY + E M     +  W  ++ G
Sbjct: 464 AYQLIESMNTEPGLAIWVALLSG 486



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 164/353 (46%), Gaps = 36/353 (10%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  S +L+ Y K GKI EA+ +FD++ +++VV W+ +I G   NG   +++  F  M 
Sbjct: 140 DVFVGSSVLNLYVKCGKIDEAKLVFDKMVKRDVVCWATMITGLVQNGNVLEAVDMFRRMR 199

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK-----------------------F 100
             G+  +   M+G++ A A L  L+L  S+HG  V+                        
Sbjct: 200 KEGIEGDGVLMLGLVQACANLGELKLGLSVHGHAVRREMLMDDVILQTSLVDMYAKIGDL 259

Query: 101 GLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
            L S +FE +     VS  A+++GF  N   + A+ L    +     P+   +++ +  C
Sbjct: 260 ELASRVFEQMPRKNAVSWGALISGFAQNGFAEYALDLLVEMQSLEFKPDTAVLVSALLAC 319

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             +G   L + IHG  ++  L  ++ +  +++DMY+    L  A  IF  ++ +DVI W 
Sbjct: 320 SQVGHLKLGKSIHGYIVR-RLGFELVLGTALIDMYAKCGSLSCAHAIFDRVDSRDVILWN 378

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+  +       + L +F +M+++ I  D     +L+S  +  G +  G     Q    
Sbjct: 379 TMIASYGIHGDGKEVLSLFLKMKEANISPDHATFASLLSALSHSGQVDVG-----QYWFN 433

Query: 281 GLQSELRLSNS------IIAMYSKCGDLDSSRSVFNQI-TEKSLVSWTAIISG 326
            + +E ++  S      ++ ++S+ G ++ +  +   + TE  L  W A++SG
Sbjct: 434 AMVNECKIPPSEKHYACMVDLFSRAGRVEEAYQLIESMNTEPGLAIWVALLSG 486


>gi|359473235|ref|XP_003631274.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74600,
           chloroplastic-like [Vitis vinifera]
          Length = 667

 Score =  236 bits (603), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 172/579 (29%), Positives = 290/579 (50%), Gaps = 52/579 (8%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P +D Y++++ + +  KSG +  A +LF+++P ++VV+W+++I+GY  +   +++ + +S
Sbjct: 41  PHVDLYSNNRAIDSLIKSGSLASALHLFEKMPIRDVVTWNLLINGYRQHELPKQAFQYYS 100

Query: 61  HMMLSGL--LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL------------ 106
            M+  G+    ++F+ V  + + AGL   + A  +H  ++  G  S+L            
Sbjct: 101 EMVFQGIRESSSTFSSVLSVCSNAGLH--QEAIQVHSRVIFLGFSSNLYVAGSLVDLYMQ 158

Query: 107 ----------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTV 156
                     F  L    L  CN ++ GF      +    +++  +   + PN +T   +
Sbjct: 159 MGDCDTALRLFSNLPRRNLAICNLVLRGFCELSRSEWLFTMYSAMKEECVKPNGLTFCYL 218

Query: 157 IRGCVALGSRALCE---LIHGLTIKLGLI-LDVSVNNSVLDMYSCLMDLDAAIQIFREME 212
           IRGC   G+   C+    +H   IK+G +  ++   N+++D Y    +L  A + F  + 
Sbjct: 219 IRGC---GNGRFCDEGKQLHCHAIKVGWVEANLFAANALVDFYCVCGNLIDAKKSFEAIR 275

Query: 213 CKDVISWTRMMGLFVDFEYAGDALKIFREMR---KSRIICDTVALLNLISVNAILG--DL 267
            +DVISW  ++ +F       DAL++F  M+   K   I   V  LN     A +G  ++
Sbjct: 276 DEDVISWNSIVSVFAASGLLSDALELFARMQSWGKKPSIRSFVGFLN-----AAIGCDNI 330

Query: 268 KRGKQLHAQVV-LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISG 326
             GKQ+ + VV LG     + + +++I MY KCGD+ SS SVF  + E++L    +++S 
Sbjct: 331 IFGKQIQSHVVKLGFAPGSVHVESALINMYGKCGDIKSSVSVFESVPERTLEICNSLMSS 390

Query: 327 YVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTAS--GELAALEICLQLHGIAFEAGF 384
            +  G   + L  F  M  E    VD +TL + L AS      +L  C  LH  A ++GF
Sbjct: 391 LLHCGIVEDVLELFGLMVDEGI-GVDEVTLSTSLKASLVSAFGSLACCRLLHCCAIKSGF 449

Query: 385 PRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH 444
               +V   LI +YSK G+V+L++ +FE++    + + + +II GY  NG G   L +  
Sbjct: 450 EFDTAVSCSLIDAYSKYGHVELSHQIFEQL-HSPNAICFTSIINGYARNGMGREGLEMLE 508

Query: 445 KMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARA 504
            M + G  PD  T+L  L  C H+GL  +G  +FN M   + + P Q+HY C+VDLL RA
Sbjct: 509 IMAKQGLKPDRVTFLCALTGCSHSGLVEEGRSVFNSMKSIHGIHPDQQHYSCMVDLLGRA 568

Query: 505 GCLSDASGLAGKLLEGMGPNIWRALLSGCVLH----VGR 539
           G L +A GL           +W +LL  C +H    VGR
Sbjct: 569 GLLDEAEGLLKHAPAKSDSVMWSSLLQSCRIHGDTIVGR 607



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 103/488 (21%), Positives = 207/488 (42%), Gaps = 43/488 (8%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y +  L+  Y + G    A  LF  +P +N+   ++V+ G+      E     +S M   
Sbjct: 147 YVAGSLVDLYMQMGDCDTALRLFSNLPRRNLAICNLVLRGFCELSRSEWLFTMYSAMKEE 206

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG-LESDLF----------------- 107
            + PN  T   ++      +  +  + +H   +K G +E++LF                 
Sbjct: 207 CVKPNGLTFCYLIRGCGNGRFCDEGKQLHCHAIKVGWVEANLFAANALVDFYCVCGNLID 266

Query: 108 -----EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA 162
                E +++  ++S N+IV+ F  + L   A+ LF   +  G  P+  + +  +   + 
Sbjct: 267 AKKSFEAIRDEDVISWNSIVSVFAASGLLSDALELFARMQSWGKKPSIRSFVGFLNAAIG 326

Query: 163 LGSRALCELIHGLTIKLGLIL-DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
             +    + I    +KLG     V V +++++MY    D+ +++ +F  +  + +     
Sbjct: 327 CDNIIFGKQIQSHVVKLGFAPGSVHVESALINMYGKCGDIKSSVSVFESVPERTLEICNS 386

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAI--LGDLKRGKQLHAQVVL 279
           +M   +      D L++F  M    I  D V L   +  + +   G L   + LH   + 
Sbjct: 387 LMSSLLHCGIVEDVLELFGLMVDEGIGVDEVTLSTSLKASLVSAFGSLACCRLLHCCAIK 446

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G + +  +S S+I  YSK G ++ S  +F Q+   + + +T+II+GY +NG  RE L +
Sbjct: 447 SGFEFDTAVSCSLIDAYSKYGHVELSHQIFEQLHSPNAICFTSIINGYARNGMGREGL-E 505

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALE-------ICLQLHGIAFEAGFPRYRSVQN 392
            +++  ++    D +T +  LT       +E           +HGI  +      +   +
Sbjct: 506 MLEIMAKQGLKPDRVTFLCALTGCSHSGLVEEGRSVFNSMKSIHGIHPD------QQHYS 559

Query: 393 CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALY-HKMTETGE 451
           C++    + G +D A  + +      D V W++++    +  HG+T +     K+    E
Sbjct: 560 CMVDLLGRAGLLDEAEGLLKHAPAKSDSVMWSSLLQSCRI--HGDTIVGRRAAKVLMELE 617

Query: 452 VPDSSTYL 459
             D +TYL
Sbjct: 618 PEDPATYL 625


>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
          Length = 601

 Score =  236 bits (603), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 141/432 (32%), Positives = 238/432 (55%), Gaps = 4/432 (0%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           LF+ L  PY+   N I+ GF  +   Q  ++ ++  R  G++P+  T   +++    L +
Sbjct: 60  LFDRLATPYIFLWNTIIRGFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRN 119

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
               +  +   +K GL  D  V NS++  ++    +D + ++F E   KDV+SWT ++  
Sbjct: 120 ENPFQF-YAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALING 178

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG-LQS 284
            +    A +AL+ F EMR S +  D V +++++   A+L D+  G+ +H   V  G +  
Sbjct: 179 CLRNGRAVEALECFVEMRSSGVEVDEVTIVSVLCAAAMLRDVWFGRWVHGFYVESGRVIW 238

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           ++ + ++++ MYSKCG  D +  VFN++  ++LVSW A+I+GYVQ    +EAL  F +M 
Sbjct: 239 DVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMI 298

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
            E  +   S T+ S LTA  +L +L+    LH     +       +   L+  YSKCG V
Sbjct: 299 IEGIEPNQS-TVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCV 357

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           D A +VFE++   +DV  W  +I G  + G   ++L L+ +M  +   P+  T+L +L+A
Sbjct: 358 DEALLVFEKLP-AKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSA 416

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C H GL ++GL +F  MI + +++P+ +HYGC+VDLL RAG L +A      +     P 
Sbjct: 417 CAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPG 476

Query: 525 IWRALLSGCVLH 536
           +W AL SGC++H
Sbjct: 477 VWGALFSGCMIH 488



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 117/453 (25%), Positives = 206/453 (45%), Gaps = 45/453 (9%)

Query: 27  LFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQN 86
           LFD +    +  W+ +I G+S +   +  + A+S +   G++P+  T   +L A + L+N
Sbjct: 60  LFDRLATPYIFLWNTIIRGFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRN 119

Query: 87  LELARSIHGLMVKFGLESD----------------------LFEGLKNPYLVSCNAIVAG 124
            E     +  +VKFGL+ D                      LF       +VS  A++ G
Sbjct: 120 -ENPFQFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALING 178

Query: 125 FINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLG-LIL 183
            + N    +A+  F   R SG+  + VT+++V+     L        +HG  ++ G +I 
Sbjct: 179 CLRNGRAVEALECFVEMRSSGVEVDEVTIVSVLCAAAMLRDVWFGRWVHGFYVESGRVIW 238

Query: 184 DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMR 243
           DV V ++++DMYS     D A+++F EM  ++++SW  ++  +V      +ALK+F+EM 
Sbjct: 239 DVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMI 298

Query: 244 KSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLD 303
              I  +   + + ++  A LG L +G+ LH  V    L    +L  +++ MYSKCG +D
Sbjct: 299 IEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVD 358

Query: 304 SSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTAS 363
            +  VF ++  K +  WTA+I+G    G A  +LN F +M + +    + +T + +L+A 
Sbjct: 359 EALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQP-NGVTFLGVLSAC 417

Query: 364 GELAALEICLQLHGIAFEAGFPRYRSVQN-----CLISSYSKCGNVDLAYIVFEEMGFLR 418
                ++  L+L    F      YR   N     C++    + G ++ A    E M    
Sbjct: 418 AHGGLVDEGLEL----FRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEP 473

Query: 419 DVVSWNTIIYGYGVNGHGETALALYHKMTETGE 451
               W  +  G            + HK  E GE
Sbjct: 474 TPGVWGALFSG-----------CMIHKAFELGE 495



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 164/349 (46%), Gaps = 25/349 (7%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
            D +  + L+S +   G +  +  LF E  +K+VVSW+ +I+G   NG   ++++ F  M
Sbjct: 136 FDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEALECFVEM 195

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMV--------------------KFGL 102
             SG+  +  T+V VL AAA L+++   R +HG  V                    K G 
Sbjct: 196 RSSGVEVDEVTIVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGY 255

Query: 103 ESD---LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
             D   +F  +    LVS  A++AG++    +++A+ +F      G+ PN  T+ + +  
Sbjct: 256 CDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTA 315

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C  LGS      +H    +  L L+  +  +++DMYS    +D A+ +F ++  KDV  W
Sbjct: 316 CAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVYPW 375

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           T M+        A  +L +F +M +SR+  + V  L ++S  A  G +  G +L   ++ 
Sbjct: 376 TAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGLELFRLMIC 435

Query: 280 G-GLQSELRLSNSIIAMYSKCGDLDSS-RSVFNQITEKSLVSWTAIISG 326
              L+  +     ++ +  + G L+ + + + +   E +   W A+ SG
Sbjct: 436 DYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPGVWGALFSG 484


>gi|90265232|emb|CAH67767.1| H0322F07.4 [Oryza sativa Indica Group]
 gi|125550186|gb|EAY96008.1| hypothetical protein OsI_17879 [Oryza sativa Indica Group]
          Length = 719

 Score =  236 bits (602), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 168/563 (29%), Positives = 276/563 (49%), Gaps = 32/563 (5%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFH-EKSMKAF 59
           P +  + +++LLS Y +   + +A  L    P  +VVS++ V+   S    H  + ++ F
Sbjct: 50  PALTTFLANQLLSLYARLSAVPDALALLRSTPRPSVVSYNTVLSALSRAPRHAPEGLRLF 109

Query: 60  SHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG-LESDL------------ 106
             +  SGL P + ++  +L  A  L++     + H      G L SD+            
Sbjct: 110 RRLHASGLRPTAPSLCALLRTAGELRDRRAGAAAHSQAATLGFLASDIVPTALLQMYSQC 169

Query: 107 ---------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
                    F+ +     V+ N ++   +      +A+  F      GL P   T+ +V+
Sbjct: 170 GAPRDANQVFDEMATRDGVAWNCVMHCNVRYGYLDRALGQFCQMVRGGLPPTESTLSSVL 229

Query: 158 RGCVALGSRALCELIHGLTIKLG-LILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
            GC   G      ++HG  +KL  L  D+ + N++LDMYS   DLD A+++F  +E  D+
Sbjct: 230 SGCGRAGDCLRGRVLHGWVVKLEELDPDMPLQNALLDMYSSCGDLDTALRVFERIETPDL 289

Query: 217 ISWTRMMGLFVDFEYAGDALKIFREMR----KSRIICDTVALLNLISVNAILGDLKRGKQ 272
           +SW  ++  F        A+  F +++      R++ D   L  ++S +A L  +  GK 
Sbjct: 290 VSWNTLIAGFSGVGDGCSAMHAFVQLKAVQFDERVVPDEYTLAAVVSASATLPAMFGGKP 349

Query: 273 LHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC 332
           LHA+V+  GL++ + + N+++ MY    D  S+R +F+ IT+K ++ WT +++G+   G 
Sbjct: 350 LHAEVIKAGLENSVFVGNTLLNMYFTNDDPHSARILFDSITQKDVIMWTEMVAGHSSLGE 409

Query: 333 AREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN 392
              AL  F+ M QE    VDS +L S L ++ ELA L+    LH    ++G+        
Sbjct: 410 GELALMYFVSMLQEGY-KVDSFSLSSALNSTTELAGLKQGEMLHAQVVKSGYEGNICASG 468

Query: 393 CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV 452
            L+  Y+K G +  AY+VF  +    D+  WN+II GYG +G+ E A  L+ +M   G  
Sbjct: 469 SLVDMYAKNGALPGAYLVFRNIQ-RPDLKCWNSIIGGYGNHGNSEMAFKLFGEMIRDGLQ 527

Query: 453 PDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASG 512
           PD  TY+SIL+AC H GL   G   +  M+ +  V P  +HY  +V LL RAG L +A  
Sbjct: 528 PDHVTYISILSACSHCGLVEKGKFYWFCMMTDGIV-PGFKHYTSMVSLLGRAGLLDEAVD 586

Query: 513 LAGK-LLEGMGPNIWRALLSGCV 534
           L  K       P +WR LLS C+
Sbjct: 587 LMMKSPFAKKCPELWRILLSSCI 609


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  236 bits (602), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 154/498 (30%), Positives = 263/498 (52%), Gaps = 30/498 (6%)

Query: 60  SHMMLSGLLPNSFTMVGVLVAAAGLQ---NLELARSIHGLMVKFGLESDLFEGLKNPYLV 116
           + M+ +GL  + FT    +VA   LQ   +L+ AR +             F  + NP   
Sbjct: 9   AQMLRTGLFFDPFT-ASKIVAFCSLQESGSLQYARLV-------------FSQIPNPTSY 54

Query: 117 SCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLT 176
           +CN+I+ G  +  L Q+A+L +      GL+P+  T  ++ + C    + +  + IH  +
Sbjct: 55  TCNSIIRGCTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSC---RNSSEGKQIHCHS 111

Query: 177 IKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDAL 236
            KLG   D    N++++MYS    L +A ++F +ME K V+SW  M+G+   ++   +A+
Sbjct: 112 TKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAV 171

Query: 237 KIFREMRKSR-IICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAM 295
           ++F  M KS  +  + V L+N+++  A   DL   K++H  +   G    + L+  ++ +
Sbjct: 172 RLFDRMMKSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDV 231

Query: 296 YSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSIT 355
           Y KCG +  +R +F++  EK+L SW  +I+G+V++    EAL  F +M Q K    D +T
Sbjct: 232 YCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREM-QTKGIKGDKVT 290

Query: 356 LVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMG 415
           + S+L A   L ALE+   LH    +       ++   L+  Y+KCG+++ A  VF EM 
Sbjct: 291 MASLLLACTHLGALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMP 350

Query: 416 FLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGL 475
             +DV++W  +I G  + G  E AL  + +M   G  PD+ T++ +L AC HAG  ++G+
Sbjct: 351 -EKDVMTWTALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGI 409

Query: 476 VIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN--IWRALLSGC 533
             FN M +   ++P+ EHYG +VD+L RAG +++A  L   +   M P+  +   LL  C
Sbjct: 410 SHFNSMSDTYGIQPTIEHYGGLVDILGRAGRIAEAEELIKSM--PMAPDQFVLGGLLGAC 467

Query: 534 VLHVGRFQDAEALRSGSQ 551
            +H G  + AE  R+  Q
Sbjct: 468 RIH-GNLEAAE--RAAKQ 482



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 100/384 (26%), Positives = 187/384 (48%), Gaps = 29/384 (7%)

Query: 4   DPYNSSKLLS--NYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           DP+ +SK+++  +  +SG ++ A  +F +IP     + + +I G +    H++++  +  
Sbjct: 19  DPFTASKIVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSIIRGCTDKNLHQEALLFYQE 78

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------- 105
           MM+ GL+P+ +T   +  +    +N    + IH    K G  SD                
Sbjct: 79  MMVQGLIPDRYTFPSLFKSC---RNSSEGKQIHCHSTKLGFASDTYAQNTLMNMYSNCGC 135

Query: 106 ------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFN-FFRGSGLVPNAVTMLTVIR 158
                 +F+ +++  +VS   ++          +AV LF+   +   + PN VT++ V+ 
Sbjct: 136 LVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLT 195

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C      A+ + IH    + G    V +N  ++D+Y     +  A  +F + + K++ S
Sbjct: 196 ACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFS 255

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           W  M+   V+     +AL +FREM+   I  D V + +L+     LG L+ GK LHA + 
Sbjct: 256 WNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGKWLHAYIK 315

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
              +  ++ L  +++ MY+KCG ++++  VF+++ EK +++WTA+I G    G A  AL 
Sbjct: 316 KQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAENALQ 375

Query: 339 QFIKMRQEKTDSVDSITLVSILTA 362
            F +M   K    D+IT V +L A
Sbjct: 376 YFDEM-HIKGVKPDAITFVGVLAA 398



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 102/397 (25%), Positives = 184/397 (46%), Gaps = 14/397 (3%)

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQ----IFREMECKDVISWTRMMGLFV 227
           IH   ++ GL  D    + ++    C +    ++Q    +F ++      +   ++    
Sbjct: 7   IHAQMLRTGLFFDPFTASKIVAF--CSLQESGSLQYARLVFSQIPNPTSYTCNSIIRGCT 64

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
           D     +AL  ++EM    +I D     +L        +   GKQ+H      G  S+  
Sbjct: 65  DKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKS---CRNSSEGKQIHCHSTKLGFASDTY 121

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
             N+++ MYS CG L S+R VF+++ +K++VSW  +I  + Q     EA+  F +M + +
Sbjct: 122 AQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKSE 181

Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
               + +TLV++LTA      L +  ++H    E GF R+  +   L+  Y KCG V LA
Sbjct: 182 NVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLA 241

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
             +F++    +++ SWN +I G+  + + E AL L+ +M   G   D  T  S+L AC H
Sbjct: 242 RDLFDK-AQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTH 300

Query: 468 AGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWR 527
            G    G  + +  I++ ++         +VD+ A+ G +  A  +  ++ E      W 
Sbjct: 301 LGALELGKWL-HAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEK-DVMTWT 358

Query: 528 ALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFL 564
           AL+ G  +  G+ ++A         KG +K   I+F+
Sbjct: 359 ALILGLAM-CGQAENALQYFDEMHIKG-VKPDAITFV 393



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 137/292 (46%), Gaps = 19/292 (6%)

Query: 271 KQLHAQVVLGGLQSELRLSNSIIAMYS--KCGDLDSSRSVFNQITEKSLVSWTAIISGYV 328
           KQ+HAQ++  GL  +   ++ I+A  S  + G L  +R VF+QI   +  +  +II G  
Sbjct: 5   KQIHAQMLRTGLFFDPFTASKIVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSIIRGCT 64

Query: 329 QNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYR 388
                +EAL  + +M  +     D  T  S+  +    +  +   Q+H  + + GF    
Sbjct: 65  DKNLHQEALLFYQEMMVQGLIP-DRYTFPSLFKSCRNSSEGK---QIHCHSTKLGFASDT 120

Query: 389 SVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTE 448
             QN L++ YS CG +  A  VF++M   + VVSW T+I  +        A+ L+ +M +
Sbjct: 121 YAQNTLMNMYSNCGCLVSARKVFDKMED-KTVVSWATMIGVHAQWDQPNEAVRLFDRMMK 179

Query: 449 TGEV-PDSSTYLSILNACGHAGLTNDGLVI--FNQMIEENKVKPSQEHYGCVVDLLARAG 505
           +  V P+  T +++L AC  A    D  ++   ++ I+E+           ++D+  + G
Sbjct: 180 SENVKPNEVTLVNVLTACARA---RDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCG 236

Query: 506 CLSDASGLAGKLLEGMGPNI--WRALLSGCVLHVGRFQDAEALRSGSQKKGI 555
           C+  A  L  K  E    N+  W  +++G V     +++A  L    Q KGI
Sbjct: 237 CVQLARDLFDKAQE---KNLFSWNIMINGHV-EDSNYEEALLLFREMQTKGI 284



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 47/74 (63%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + L+  Y K G I+ A  +F E+PEK+V++W+ +I G ++ G  E +++ F  M + G+ 
Sbjct: 327 TALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAENALQYFDEMHIKGVK 386

Query: 69  PNSFTMVGVLVAAA 82
           P++ T VGVL A +
Sbjct: 387 PDAITFVGVLAACS 400


>gi|302801912|ref|XP_002982712.1| hypothetical protein SELMODRAFT_116683 [Selaginella moellendorffii]
 gi|300149811|gb|EFJ16465.1| hypothetical protein SELMODRAFT_116683 [Selaginella moellendorffii]
          Length = 734

 Score =  236 bits (602), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 154/554 (27%), Positives = 277/554 (50%), Gaps = 42/554 (7%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTM 74
           Y K G + +A+  FDEI +KN   W+++I GY+ +G + ++++ F  M    + PN F  
Sbjct: 59  YAKCGCLADAKAAFDEIADKNDFVWNLMISGYARSGKNREALELFHKM---DIPPNGFIF 115

Query: 75  VGVLVAAAGLQNLELARSIHGLMVK-FGLESD----------------------LFEGLK 111
              L A AGL +LE  R IH  +++   + SD                      +F+ + 
Sbjct: 116 ASALAACAGLGDLEQGREIHKRVLESRSIASDVVVQNSLVTMYARCGSVLEGIKIFDAMP 175

Query: 112 NPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCEL 171
              LVS NA+++ F+     +QA+ L++  +   L PN     +++  C +LG+  L   
Sbjct: 176 RKNLVSWNAMISAFVQCDYPEQALELYHRMKRERLEPNGFVFASLLTACASLGNLQLGSS 235

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           IH     LGL  D+ + N++++MYS    +D A+++F  +  +DV +WT M+  +    +
Sbjct: 236 IHQRITSLGLQRDIVMENALINMYSKCGCMDEALEVFSGLATRDVFTWTSMIAGYAQLGF 295

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
             +A   +  MR+  +   +   + L+S  +    L++GK LH +V   G +S   +  +
Sbjct: 296 GSEAFAFYDRMRRDCVSPTSATFVALLSACST---LEQGKHLHEEVKAFGFESITVVETA 352

Query: 292 IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
           ++ MYS+CG L+ +  +F ++ +K  VSW+A+++ + Q G   +AL  F +M  E    +
Sbjct: 353 LMFMYSRCGSLEDAEFLFAKMQQKDYVSWSAMVTSHAQFGDPGKALTLFRQMILEGM-QL 411

Query: 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVF 411
              T  S L A        +   +  +   +G  +  S++  L+S+YSKCG+++ A  +F
Sbjct: 412 SLPTFCSALQACSLKRDSRLSKTIRELIDWSGIDKMDSIRADLVSAYSKCGDMEEARKIF 471

Query: 412 EEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLT 471
           + M   RDV++W  +I GY   G  + AL L+H+M   G  PDS T+ S+L AC +    
Sbjct: 472 DRMES-RDVLTWTVMIKGYAQQGDSKAALELFHRMKPEGVEPDSVTFSSVLQACSN---L 527

Query: 472 NDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN---IWRA 528
            DG  +  +++     K S      ++++ AR G + DA     ++ E M  +    W A
Sbjct: 528 EDGREVHARILAAQGGKMSDFLGNGLINMYARCGSMRDAR----QIFESMDRSSRISWSA 583

Query: 529 LLSGCVLHVGRFQD 542
           +++ C  H G+  D
Sbjct: 584 IMTLCARH-GQHDD 596



 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 145/526 (27%), Positives = 252/526 (47%), Gaps = 31/526 (5%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L++ Y + G + E   +FD +P KN+VSW+ +I  +    + E++++ +  M    L PN
Sbjct: 154 LVTMYARCGSVLEGIKIFDAMPRKNLVSWNAMISAFVQCDYPEQALELYHRMKRERLEPN 213

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------------FE 108
            F    +L A A L NL+L  SIH  +   GL+ D+                      F 
Sbjct: 214 GFVFASLLTACASLGNLQLGSSIHQRITSLGLQRDIVMENALINMYSKCGCMDEALEVFS 273

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
           GL    + +  +++AG+       +A   ++  R   + P + T + ++  C  L     
Sbjct: 274 GLATRDVFTWTSMIAGYAQLGFGSEAFAFYDRMRRDCVSPTSATFVALLSACSTLEQG-- 331

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
            + +H      G      V  +++ MYS    L+ A  +F +M+ KD +SW+ M+     
Sbjct: 332 -KHLHEEVKAFGFESITVVETALMFMYSRCGSLEDAEFLFAKMQQKDYVSWSAMVTSHAQ 390

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
           F   G AL +FR+M    +        + +   ++  D +  K +   +   G+     +
Sbjct: 391 FGDPGKALTLFRQMILEGMQLSLPTFCSALQACSLKRDSRLSKTIRELIDWSGIDKMDSI 450

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
              +++ YSKCGD++ +R +F+++  + +++WT +I GY Q G ++ AL  F +M+ E  
Sbjct: 451 RADLVSAYSKCGDMEEARKIFDRMESRDVLTWTVMIKGYAQQGDSKAALELFHRMKPEGV 510

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEA-GFPRYRSVQNCLISSYSKCGNVDLA 407
           +  DS+T  S+L A   L   E   ++H     A G      + N LI+ Y++CG++  A
Sbjct: 511 EP-DSVTFSSVLQACSNL---EDGREVHARILAAQGGKMSDFLGNGLINMYARCGSMRDA 566

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
             +FE M      +SW+ I+     +G  +  +  Y  M   G VPD  T ++ILN+C H
Sbjct: 567 RQIFESMD-RSSRISWSAIMTLCARHGQHDDIIDTYRLMVNEGVVPDGVTLIAILNSCSH 625

Query: 468 AGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL 513
           AGLT++    F  +I + ++    EHY C+VDLL RAG L +A  L
Sbjct: 626 AGLTDEACHYFTWIISDFELPHLDEHYQCMVDLLCRAGRLDEAEEL 671



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 125/256 (48%), Gaps = 11/256 (4%)

Query: 266 DLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIIS 325
           ++  G++LH  +   G      L   ++ MY+KCG L  +++ F++I +K+   W  +IS
Sbjct: 29  NVSEGRRLHDDLRRSGYGDSSYLRRCVVQMYAKCGCLADAKAAFDEIADKNDFVWNLMIS 88

Query: 326 GYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEA-GF 384
           GY ++G  REAL  F KM        +     S L A   L  LE   ++H    E+   
Sbjct: 89  GYARSGKNREALELFHKMDIPP----NGFIFASALAACAGLGDLEQGREIHKRVLESRSI 144

Query: 385 PRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH 444
                VQN L++ Y++CG+V     +F+ M   +++VSWN +I  +    + E AL LYH
Sbjct: 145 ASDVVVQNSLVTMYARCGSVLEGIKIFDAMP-RKNLVSWNAMISAFVQCDYPEQALELYH 203

Query: 445 KMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARA 504
           +M      P+   + S+L AC   G    G  I +Q I    ++        ++++ ++ 
Sbjct: 204 RMKRERLEPNGFVFASLLTACASLGNLQLGSSI-HQRITSLGLQRDIVMENALINMYSKC 262

Query: 505 GCLSDA----SGLAGK 516
           GC+ +A    SGLA +
Sbjct: 263 GCMDEALEVFSGLATR 278


>gi|115461254|ref|NP_001054227.1| Os04g0672700 [Oryza sativa Japonica Group]
 gi|70663948|emb|CAE54552.2| OSJNBb0004A17.12 [Oryza sativa Japonica Group]
 gi|113565798|dbj|BAF16141.1| Os04g0672700 [Oryza sativa Japonica Group]
 gi|125592028|gb|EAZ32378.1| hypothetical protein OsJ_16588 [Oryza sativa Japonica Group]
          Length = 719

 Score =  236 bits (601), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 167/563 (29%), Positives = 276/563 (49%), Gaps = 32/563 (5%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFH-EKSMKAF 59
           P +  + +++LLS Y +   + +A  L    P  +VVS++ V+   S    H  + ++ F
Sbjct: 50  PALTTFLANQLLSLYARLSAVPDALALLRSTPRPSVVSYNTVLSALSRAPRHAPEGLRLF 109

Query: 60  SHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG-LESDL------------ 106
             +  SGL P + ++  +L  A  L++     + H      G L SD+            
Sbjct: 110 RRLHASGLRPTAPSLCALLRTAGELRDRRAGAAAHSQAATLGFLASDIVPTALLQMYSQC 169

Query: 107 ---------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
                    F+ +     V+ N ++   +      +A+  F      GL P   T+ +V+
Sbjct: 170 GAPRDANQVFDEMATRDGVAWNCVMHCNVRYGYLDRALGQFCRMVRGGLPPTESTLSSVL 229

Query: 158 RGCVALGSRALCELIHGLTIKLG-LILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
            GC   G      ++HG  +KL  L  D+ + N++LDMYS   DLD A+++F  +E  D+
Sbjct: 230 SGCGRAGDCLRGRVLHGWVVKLEELDPDMPLQNALLDMYSSCGDLDTALRVFERIETPDL 289

Query: 217 ISWTRMMGLFVDFEYAGDALKIFREMR----KSRIICDTVALLNLISVNAILGDLKRGKQ 272
           +SW  ++  F        A+  F +++      R++ D   L  ++S +A L  +  GK 
Sbjct: 290 VSWNTLIAGFSGVGDGCSAVHAFVQLKAVQFDERVVPDEYTLAAVVSASATLPAMFGGKP 349

Query: 273 LHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC 332
           LHA+V+  GL++ + + N+++ MY    D  S+R +F+ IT++ ++ WT +++G+   G 
Sbjct: 350 LHAEVIKAGLENSVFVGNTLLNMYFTNDDPHSARILFDSITQEDVIMWTEMVAGHSSLGE 409

Query: 333 AREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN 392
              AL  F+ M QE    VDS +L S L ++ ELA L+    LH    ++G+        
Sbjct: 410 GELALRYFVSMLQEGY-KVDSFSLSSALNSTTELAGLKQGEMLHAQVVKSGYEGNICASG 468

Query: 393 CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV 452
            L+  Y+K G +  AY+VF  +    D+  WN+II GYG +G+ E A  L+ +M   G  
Sbjct: 469 SLVDMYAKNGALPGAYLVFRNIQ-RPDLKCWNSIIGGYGNHGNSEMAFKLFGEMIRDGLQ 527

Query: 453 PDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASG 512
           PD  TY+SIL+AC H GL   G   +  M+ +  V P  +HY  +V LL RAG L +A  
Sbjct: 528 PDHVTYISILSACSHCGLVEKGKFYWFCMMTDGIV-PGFKHYTSMVSLLGRAGLLDEAVD 586

Query: 513 LAGK-LLEGMGPNIWRALLSGCV 534
           L  K       P +WR LLS C+
Sbjct: 587 LMMKSPFAKKCPELWRILLSSCI 609


>gi|255572205|ref|XP_002527042.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533604|gb|EEF35342.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 520

 Score =  236 bits (601), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 142/482 (29%), Positives = 246/482 (51%), Gaps = 25/482 (5%)

Query: 45  GYSINGFHEKSMKAFSHMMLSGLL-PNSFTMVGVLVAAAGLQNLELARSIHGLMVK---- 99
            Y+ N  + ++++ F  ++    L P+SFT   VL A  GL   +  R IH  ++K    
Sbjct: 3   AYTKNCMYTEALELFDRLLQYPYLQPDSFTYPSVLKACGGLGRYDYGRMIHTHLIKSGFV 62

Query: 100 ------------------FGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFF 141
                             FG    LF+ +    +   N +++ +  +   ++A+ +F   
Sbjct: 63  FDIVVASSLVSLHAKCNLFGYAIQLFDEMPERDVACWNTVISCYYQDGKAEKALEMFGKM 122

Query: 142 RGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDL 201
           R SG  PN+VT+ TVI  C  L      + IH   ++ G++LD  V ++++DMY     L
Sbjct: 123 RDSGFEPNSVTLTTVISSCARLLDLERGKEIHREVMQNGMVLDGFVGSALVDMYGKFGCL 182

Query: 202 DAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVN 261
           D A  IF +M  K +++W  ++  +     + + +++F  M           L +++   
Sbjct: 183 DLAKDIFEQMPKKTLVAWNSLIAGYSSAADSKECIELFWRMNMEGTKPTVTTLSSILLAC 242

Query: 262 AILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWT 321
           +    L+ G+ +H   V   +Q ++ +S+ +I +Y KCG + S+ ++F  + + ++V W 
Sbjct: 243 SRAAHLQHGRFIHGYAVRNRVQLDIFVSSGLIELYFKCGKVQSAENIFYMLPKANVVLWN 302

Query: 322 AIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFE 381
            +ISGYV  G   +AL+ + +M+       D++T  SIL+A  +LAALE   ++H    +
Sbjct: 303 VMISGYVTIGDYVKALDMYDEMKIASVKP-DAVTFSSILSACSQLAALEKGKEIHNCITK 361

Query: 382 AGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALA 441
                   V   L+  Y+KCG VD A  VF ++   RD++SW +II  YG +G    AL 
Sbjct: 362 NDLETNEIVMGALLDMYAKCGAVDEALSVFNKLP-ERDLLSWTSIISAYGSHGQALEALR 420

Query: 442 LYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLL 501
           L+ ++ ++   PD+ T+L++L+AC HAGL + G   FNQMI    +KP  EHY C++DLL
Sbjct: 421 LFEELQQSKASPDAVTFLAVLSACSHAGLVDKGYYYFNQMITNYGIKPGLEHYSCLIDLL 480

Query: 502 AR 503
            R
Sbjct: 481 GR 482



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 125/399 (31%), Positives = 208/399 (52%), Gaps = 4/399 (1%)

Query: 122 VAGFINNKLFQQAVLLFN-FFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLG 180
           +A +  N ++ +A+ LF+   +   L P++ T  +V++ C  LG      +IH   IK G
Sbjct: 1   MAAYTKNCMYTEALELFDRLLQYPYLQPDSFTYPSVLKACGGLGRYDYGRMIHTHLIKSG 60

Query: 181 LILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFR 240
            + D+ V +S++ +++       AIQ+F EM  +DV  W  ++  +     A  AL++F 
Sbjct: 61  FVFDIVVASSLVSLHAKCNLFGYAIQLFDEMPERDVACWNTVISCYYQDGKAEKALEMFG 120

Query: 241 EMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCG 300
           +MR S    ++V L  +IS  A L DL+RGK++H +V+  G+  +  + ++++ MY K G
Sbjct: 121 KMRDSGFEPNSVTLTTVISSCARLLDLERGKEIHREVMQNGMVLDGFVGSALVDMYGKFG 180

Query: 301 DLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSIL 360
            LD ++ +F Q+ +K+LV+W ++I+GY     ++E +  F +M  E T    + TL SIL
Sbjct: 181 CLDLAKDIFEQMPKKTLVAWNSLIAGYSSAADSKECIELFWRMNMEGTKPTVT-TLSSIL 239

Query: 361 TASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDV 420
            A    A L+    +HG A          V + LI  Y KCG V  A  +F  M    +V
Sbjct: 240 LACSRAAHLQHGRFIHGYAVRNRVQLDIFVSSGLIELYFKCGKVQSAENIF-YMLPKANV 298

Query: 421 VSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQ 480
           V WN +I GY   G    AL +Y +M      PD+ T+ SIL+AC        G  I N 
Sbjct: 299 VLWNVMISGYVTIGDYVKALDMYDEMKIASVKPDAVTFSSILSACSQLAALEKGKEIHN- 357

Query: 481 MIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519
            I +N ++ ++   G ++D+ A+ G + +A  +  KL E
Sbjct: 358 CITKNDLETNEIVMGALLDMYAKCGAVDEALSVFNKLPE 396



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 112/377 (29%), Positives = 201/377 (53%), Gaps = 23/377 (6%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           +S L+S + K      A  LFDE+PE++V  W+ VI  Y  +G  EK+++ F  M  SG 
Sbjct: 68  ASSLVSLHAKCNLFGYAIQLFDEMPERDVACWNTVISCYYQDGKAEKALEMFGKMRDSGF 127

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIH------GLMV-------------KFG---LESD 105
            PNS T+  V+ + A L +LE  + IH      G+++             KFG   L  D
Sbjct: 128 EPNSVTLTTVISSCARLLDLERGKEIHREVMQNGMVLDGFVGSALVDMYGKFGCLDLAKD 187

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +FE +    LV+ N+++AG+ +    ++ + LF      G  P   T+ +++  C     
Sbjct: 188 IFEQMPKKTLVAWNSLIAGYSSAADSKECIELFWRMNMEGTKPTVTTLSSILLACSRAAH 247

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
                 IHG  ++  + LD+ V++ ++++Y     + +A  IF  +   +V+ W  M+  
Sbjct: 248 LQHGRFIHGYAVRNRVQLDIFVSSGLIELYFKCGKVQSAENIFYMLPKANVVLWNVMISG 307

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +V       AL ++ EM+ + +  D V   +++S  + L  L++GK++H  +    L++ 
Sbjct: 308 YVTIGDYVKALDMYDEMKIASVKPDAVTFSSILSACSQLAALEKGKEIHNCITKNDLETN 367

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
             +  +++ MY+KCG +D + SVFN++ E+ L+SWT+IIS Y  +G A EAL  F +++Q
Sbjct: 368 EIVMGALLDMYAKCGAVDEALSVFNKLPERDLLSWTSIISAYGSHGQALEALRLFEELQQ 427

Query: 346 EKTDSVDSITLVSILTA 362
            K  S D++T +++L+A
Sbjct: 428 SKA-SPDAVTFLAVLSA 443



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 153/298 (51%), Gaps = 22/298 (7%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  S L+  Y K G +  A+++F+++P+K +V+W+ +I GYS     ++ ++ F  M
Sbjct: 164 LDGFVGSALVDMYGKFGCLDLAKDIFEQMPKKTLVAWNSLIAGYSSAADSKECIELFWRM 223

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY------ 114
            + G  P   T+  +L+A +   +L+  R IHG  V+  ++ D+F   GL   Y      
Sbjct: 224 NMEGTKPTVTTLSSILLACSRAAHLQHGRFIHGYAVRNRVQLDIFVSSGLIELYFKCGKV 283

Query: 115 --------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                         +V  N +++G++    + +A+ +++  + + + P+AVT  +++  C
Sbjct: 284 QSAENIFYMLPKANVVLWNVMISGYVTIGDYVKALDMYDEMKIASVKPDAVTFSSILSAC 343

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             L +    + IH    K  L  +  V  ++LDMY+    +D A+ +F ++  +D++SWT
Sbjct: 344 SQLAALEKGKEIHNCITKNDLETNEIVMGALLDMYAKCGAVDEALSVFNKLPERDLLSWT 403

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
            ++  +     A +AL++F E+++S+   D V  L ++S  +  G + +G     Q++
Sbjct: 404 SIISAYGSHGQALEALRLFEELQQSKASPDAVTFLAVLSACSHAGLVDKGYYYFNQMI 461



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 110/231 (47%), Gaps = 38/231 (16%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D + SS L+  YFK GK++ AEN+F  +P+ NVV W+++I GY   G + K++  +  M
Sbjct: 265 LDIFVSSGLIELYFKCGKVQSAENIFYMLPKANVVLWNVMISGYVTIGDYVKALDMYDEM 324

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
            ++ + P++ T   +L A + L  LE  + IH  + K  LE++                 
Sbjct: 325 KIASVKPDAVTFSSILSACSQLAALEKGKEIHNCITKNDLETNEIVMGALLDMYAKCGAV 384

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +F  L    L+S  +I++ + ++    +A+ LF   + S   P+AVT L V+  C
Sbjct: 385 DEALSVFNKLPERDLLSWTSIISAYGSHGQALEALRLFEELQQSKASPDAVTFLAVLSAC 444

Query: 161 -----VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQ 206
                V  G     ++I    IK G           L+ YSCL+DL   IQ
Sbjct: 445 SHAGLVDKGYYYFNQMITNYGIKPG-----------LEHYSCLIDLLGRIQ 484


>gi|20146226|dbj|BAB89008.1| PPR repeat protein-like [Oryza sativa Japonica Group]
 gi|125573391|gb|EAZ14906.1| hypothetical protein OsJ_04836 [Oryza sativa Japonica Group]
          Length = 785

 Score =  236 bits (601), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 160/566 (28%), Positives = 279/566 (49%), Gaps = 32/566 (5%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P    +  + LL+ Y + G    A  L DE+P +N VS++++I  YS  G    S++  +
Sbjct: 39  PAASLFLRNTLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLA 98

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPYL--- 115
               +G+  + F+    L A +   +L   R++H L +  GL S +F    L + Y    
Sbjct: 99  RARRAGVDVDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCG 158

Query: 116 -----------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                            VS N++V+G++     ++ V +F   R  G+  N+  + +VI+
Sbjct: 159 EMGEARRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIK 218

Query: 159 GCVALG--SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
            C   G  +  + E +HG  IK GL  DV + ++++DMY+    L  A  +FR ++  +V
Sbjct: 219 CCSGRGDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNV 278

Query: 217 ISWTRMMGLF------VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG 270
           + +  M+  F      +  E A +AL ++ E++   +        +++    + G L+ G
Sbjct: 279 VMFNTMIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFG 338

Query: 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
           KQ+H QV+    Q +  + +++I +Y   G ++     F    +  +V+WTA++SG VQN
Sbjct: 339 KQIHGQVIKYTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQN 398

Query: 331 GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV 390
               +AL+ F +         D  T+ S++ A   LA      Q+   A ++GF R+  +
Sbjct: 399 ELHEKALSLFHESLGAGLKP-DLFTISSVMNACASLAVARAGEQIQCFATKSGFDRFTVM 457

Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
            N  +  Y++ G+VD A   F+EM    DVVSW+ +I  +  +G    AL  + +M +  
Sbjct: 458 GNSCVHMYARSGDVDAATRRFQEMES-HDVVSWSAVISCHAQHGCARDALHFFDEMVDAK 516

Query: 451 EVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
            VP+  T+L +L AC H GL ++GL  +  M ++  + P+ +H  CVVDLL RAG L+DA
Sbjct: 517 VVPNEITFLGVLTACSHGGLVDEGLRYYETMTKDYGLSPTIKHCTCVVDLLGRAGRLADA 576

Query: 511 SGLAGKLLEGMGPNIWRALLSGCVLH 536
                  +    P IWR+LL+ C +H
Sbjct: 577 EAFISNSIFHADPVIWRSLLASCRIH 602



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 126/503 (25%), Positives = 233/503 (46%), Gaps = 61/503 (12%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           + S+ L+S Y K G++ EA  +FD   E++ VSW+ ++ GY   G  E+ ++ F+ M   
Sbjct: 145 FVSNSLVSMYSKCGEMGEARRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRG 204

Query: 66  GLLPNSFTMVGVLVAAAGLQN--LELARSIHGLMVKFGLESD------------------ 105
           G+  NSF +  V+   +G  +  +++A ++HG ++K GL+SD                  
Sbjct: 205 GMGLNSFALGSVIKCCSGRGDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALV 264

Query: 106 ----LFEGLKNPYLVSCNAIVAGF------INNKLFQQAVLLFNFFRGSGLVPNAVTMLT 155
               LF  ++ P +V  N ++AGF      I  ++  +A+ L++  +  G+ P   T  +
Sbjct: 265 EAAALFRSVQEPNVVMFNTMIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSS 324

Query: 156 VIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMY---SCLMDLDAAIQIFREME 212
           V+R C   G     + IHG  IK     D  + ++++D+Y    C+ D     + FR   
Sbjct: 325 VLRACNLAGYLEFGKQIHGQVIKYTFQEDDFIGSALIDLYFNSGCMED---GFRCFRSSP 381

Query: 213 CKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQ 272
             D+++WT M+   V  E    AL +F E   + +  D   + ++++  A L   + G+Q
Sbjct: 382 KHDIVTWTAMVSGCVQNELHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVARAGEQ 441

Query: 273 LHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC 332
           +       G      + NS + MY++ GD+D++   F ++    +VSW+A+IS + Q+GC
Sbjct: 442 IQCFATKSGFDRFTVMGNSCVHMYARSGDVDAATRRFQEMESHDVVSWSAVISCHAQHGC 501

Query: 333 AREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ- 391
           AR+AL+ F +M   K    + IT + +LTA             HG   + G   Y ++  
Sbjct: 502 ARDALHFFDEMVDAKV-VPNEITFLGVLTACS-----------HGGLVDEGLRYYETMTK 549

Query: 392 -----------NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETAL 440
                       C++    + G +  A        F  D V W +++    ++   E   
Sbjct: 550 DYGLSPTIKHCTCVVDLLGRAGRLADAEAFISNSIFHADPVIWRSLLASCRIHRDLERGQ 609

Query: 441 ALYHKMTETGEVPDSSTYLSILN 463
            + +++ E  E   S++Y+ + N
Sbjct: 610 LVANRIMEL-EPTSSASYVILYN 631


>gi|302791828|ref|XP_002977680.1| hypothetical protein SELMODRAFT_51483 [Selaginella moellendorffii]
 gi|300154383|gb|EFJ21018.1| hypothetical protein SELMODRAFT_51483 [Selaginella moellendorffii]
          Length = 571

 Score =  236 bits (601), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 165/565 (29%), Positives = 278/565 (49%), Gaps = 39/565 (6%)

Query: 36  VVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHG 95
           VV W+ +I GY+ +G   ++++ F+ M  + +LP+  T V VL A   +Q+LE  R IH 
Sbjct: 1   VVIWTAMITGYAKHGDFSRAIQFFAEMERNHVLPDKITYVAVLGA---IQDLEQGRRIHV 57

Query: 96  LMVKFGLESDL----------------------FEGLKNPYLVSCNAIVAGFINNKLFQQ 133
            + + G ++DL                      FE + +  +VS  +I+A       F  
Sbjct: 58  RIQETGYDTDLVVANALMKMYAACSSLADATRVFEAMDHRDVVSWTSIIAANARAGDFPA 117

Query: 134 AVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLD 193
           A+ LF   +  G  PN +T+L ++  C      A    IH      GL  DV V N++L+
Sbjct: 118 AMGLFRRMQLQGTRPNRITLLELLAWCDDPDEGAA---IHERAFASGLRSDVPVCNAILN 174

Query: 194 MYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVA 253
           MY+     + A ++F  M  ++ +SWT MM   V      DAL++FR+M    +  D++A
Sbjct: 175 MYAKAGRFETASELFERMPVRNAVSWTAMMAAMVRAGRHDDALRLFRDMEDDGVEPDSIA 234

Query: 254 LLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT 313
            + +I+           + +H  ++ GG  S+  +SN+II  Y++CG L  +   F +I 
Sbjct: 235 FITVINA---CSSAATARWIHGCIIRGGCDSDTAVSNAIIRAYARCGSLKEAYRTFVEIK 291

Query: 314 EK-SLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEIC 372
           E+   VSWT +IS + + G  +  +  F +M  E   + + +TL++++ A    +A++  
Sbjct: 292 ERRDHVSWTTMISAFAEFGRIKRCVQLFREMLLEGVRA-NEVTLITVVNACAGASAIKEG 350

Query: 373 LQLHGIAFEAGFPRYRS-VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYG 431
             +H         R  S V   L+  Y KCG++++A  +F E+    DVVSW +II    
Sbjct: 351 RWIHDCVIGYQLERSSSMVATALLDMYGKCGSLEVAARIFGELE-QPDVVSWTSIIAATA 409

Query: 432 VNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENK--VKP 489
            NG G +A  L+  M   G  P   T++S++ AC HAGL + G     ++ ++++  ++ 
Sbjct: 410 QNGDGSSAARLFCAMQLEGVRPVDVTFVSVVAACSHAGLVDLGKEFVTRLRKDHREGIEL 469

Query: 490 SQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH--VGRFQDAEALR 547
           + EH GC+VDLLARAG L +A  +   +     P +W A L+GC  +  + R Q A A  
Sbjct: 470 TLEHCGCIVDLLARAGRLEEAECVIDSMPFKPTPAVWMAFLAGCKAYEDISRGQRAAAQI 529

Query: 548 SGSQKKGIIKIPGISFLNSTSRDFG 572
            G  +K    +  +S   + S   G
Sbjct: 530 LGLDEKTTAAVIALSSTYAASDRRG 554



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 116/447 (25%), Positives = 206/447 (46%), Gaps = 30/447 (6%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ L+  Y     + +A  +F+ +  ++VVSW+ +I   +  G    +M  F  M L G 
Sbjct: 71  ANALMKMYAACSSLADATRVFEAMDHRDVVSWTSIIAANARAGDFPAAMGLFRRMQLQGT 130

Query: 68  LPNSFTMVGVLVA---------------AAGLQ-NLELARSIHGLMVK---FGLESDLFE 108
            PN  T++ +L                 A+GL+ ++ +  +I  +  K   F   S+LFE
Sbjct: 131 RPNRITLLELLAWCDDPDEGAAIHERAFASGLRSDVPVCNAILNMYAKAGRFETASELFE 190

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            +     VS  A++A  +       A+ LF      G+ P+++  +TVI  C    S A 
Sbjct: 191 RMPVRNAVSWTAMMAAMVRAGRHDDALRLFRDMEDDGVEPDSIAFITVINAC---SSAAT 247

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM-ECKDVISWTRMMGLFV 227
              IHG  I+ G   D +V+N+++  Y+    L  A + F E+ E +D +SWT M+  F 
Sbjct: 248 ARWIHGCIIRGGCDSDTAVSNAIIRAYARCGSLKEAYRTFVEIKERRDHVSWTTMISAFA 307

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ-SEL 286
           +F      +++FREM    +  + V L+ +++  A    +K G+ +H  V+   L+ S  
Sbjct: 308 EFGRIKRCVQLFREMLLEGVRANEVTLITVVNACAGASAIKEGRWIHDCVIGYQLERSSS 367

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            ++ +++ MY KCG L+ +  +F ++ +  +VSWT+II+   QNG    A   F  M+ E
Sbjct: 368 MVATALLDMYGKCGSLEVAARIFGELEQPDVVSWTSIIAATAQNGDGSSAARLFCAMQLE 427

Query: 347 KTDSVDSITLVSILTASGELAAL----EICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
               VD +T VS++ A      +    E   +L     E G         C++   ++ G
Sbjct: 428 GVRPVD-VTFVSVVAACSHAGLVDLGKEFVTRLRKDHRE-GIELTLEHCGCIVDLLARAG 485

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYG 429
            ++ A  V + M F      W   + G
Sbjct: 486 RLEEAECVIDSMPFKPTPAVWMAFLAG 512


>gi|297739065|emb|CBI28554.3| unnamed protein product [Vitis vinifera]
          Length = 1125

 Score =  236 bits (601), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 173/579 (29%), Positives = 289/579 (49%), Gaps = 52/579 (8%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P +D Y++++ + +  KSG +  A +LF+++P ++VV+W+++I+GY  +   +++ + +S
Sbjct: 41  PHVDLYSNNRAIDSLIKSGSLASALHLFEKMPIRDVVTWNLLINGYRQHELPKQAFQYYS 100

Query: 61  HMMLSGLLPNSFTMVGV--LVAAAGLQNLELARSIHGLMVKFGLESDL------------ 106
            M+  G+  +S T   V  + + AGL   + A  +H  ++  G  S+L            
Sbjct: 101 EMVFQGIRESSSTFSSVLSVCSNAGLH--QEAIQVHSRVIFLGFSSNLYVAGSLVDLYMQ 158

Query: 107 ----------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTV 156
                     F  L    L  CN ++ GF      +    +++  +   + PN +T   +
Sbjct: 159 MGDCDTALRLFSNLPRRNLAICNLVLRGFCELSRSEWLFTMYSAMKEECVKPNGLTFCYL 218

Query: 157 IRGCVALGSRALCE---LIHGLTIKLGLI-LDVSVNNSVLDMYSCLMDLDAAIQIFREME 212
           IRGC   G+   C+    +H   IK+G +  ++   N+++D Y    +L  A + F  + 
Sbjct: 219 IRGC---GNGRFCDEGKQLHCHAIKVGWVEANLFAANALVDFYCVCGNLIDAKKSFEAIR 275

Query: 213 CKDVISWTRMMGLFVDFEYAGDALKIFREMR---KSRIICDTVALLNLISVNAILG--DL 267
            +DVISW  ++ +F       DAL++F  M+   K   I   V  LN     A +G  ++
Sbjct: 276 DEDVISWNSIVSVFAASGLLSDALELFARMQSWGKKPSIRSFVGFLN-----AAIGCDNI 330

Query: 268 KRGKQLHAQVV-LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISG 326
             GKQ+ + VV LG     + + +++I MY KCGD+ SS SVF  + E++L    +++S 
Sbjct: 331 IFGKQIQSHVVKLGFAPGSVHVESALINMYGKCGDIKSSVSVFESVPERTLEICNSLMSS 390

Query: 327 YVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTAS--GELAALEICLQLHGIAFEAGF 384
            +  G   + L  F  M  E    VD +TL + L AS      +L  C  LH  A ++GF
Sbjct: 391 LLHCGIVEDVLELFGLMVDEGI-GVDEVTLSTSLKASLVSAFGSLACCRLLHCCAIKSGF 449

Query: 385 PRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH 444
               +V   LI +YSK G+V+L++ +FE++    + + + +II GY  NG G   L +  
Sbjct: 450 EFDTAVSCSLIDAYSKYGHVELSHQIFEQL-HSPNAICFTSIINGYARNGMGREGLEMLE 508

Query: 445 KMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARA 504
            M + G  PD  T+L  L  C H+GL  +G  +FN M   + + P Q+HY C+VDLL RA
Sbjct: 509 IMAKQGLKPDRVTFLCALTGCSHSGLVEEGRSVFNSMKSIHGIHPDQQHYSCMVDLLGRA 568

Query: 505 GCLSDASGLAGKLLEGMGPNIWRALLSGCVLH----VGR 539
           G L +A GL           +W +LL  C +H    VGR
Sbjct: 569 GLLDEAEGLLKHAPAKSDSVMWSSLLQSCRIHGDTIVGR 607



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 103/488 (21%), Positives = 207/488 (42%), Gaps = 43/488 (8%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y +  L+  Y + G    A  LF  +P +N+   ++V+ G+      E     +S M   
Sbjct: 147 YVAGSLVDLYMQMGDCDTALRLFSNLPRRNLAICNLVLRGFCELSRSEWLFTMYSAMKEE 206

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG-LESDLF----------------- 107
            + PN  T   ++      +  +  + +H   +K G +E++LF                 
Sbjct: 207 CVKPNGLTFCYLIRGCGNGRFCDEGKQLHCHAIKVGWVEANLFAANALVDFYCVCGNLID 266

Query: 108 -----EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA 162
                E +++  ++S N+IV+ F  + L   A+ LF   +  G  P+  + +  +   + 
Sbjct: 267 AKKSFEAIRDEDVISWNSIVSVFAASGLLSDALELFARMQSWGKKPSIRSFVGFLNAAIG 326

Query: 163 LGSRALCELIHGLTIKLGLIL-DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
             +    + I    +KLG     V V +++++MY    D+ +++ +F  +  + +     
Sbjct: 327 CDNIIFGKQIQSHVVKLGFAPGSVHVESALINMYGKCGDIKSSVSVFESVPERTLEICNS 386

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAI--LGDLKRGKQLHAQVVL 279
           +M   +      D L++F  M    I  D V L   +  + +   G L   + LH   + 
Sbjct: 387 LMSSLLHCGIVEDVLELFGLMVDEGIGVDEVTLSTSLKASLVSAFGSLACCRLLHCCAIK 446

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G + +  +S S+I  YSK G ++ S  +F Q+   + + +T+II+GY +NG  RE L +
Sbjct: 447 SGFEFDTAVSCSLIDAYSKYGHVELSHQIFEQLHSPNAICFTSIINGYARNGMGREGL-E 505

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALE-------ICLQLHGIAFEAGFPRYRSVQN 392
            +++  ++    D +T +  LT       +E           +HGI  +      +   +
Sbjct: 506 MLEIMAKQGLKPDRVTFLCALTGCSHSGLVEEGRSVFNSMKSIHGIHPD------QQHYS 559

Query: 393 CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALY-HKMTETGE 451
           C++    + G +D A  + +      D V W++++    +  HG+T +     K+    E
Sbjct: 560 CMVDLLGRAGLLDEAEGLLKHAPAKSDSVMWSSLLQSCRI--HGDTIVGRRAAKVLMELE 617

Query: 452 VPDSSTYL 459
             D +TYL
Sbjct: 618 PEDPATYL 625


>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
 gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 970

 Score =  236 bits (601), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 162/565 (28%), Positives = 279/565 (49%), Gaps = 37/565 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L+S Y   G + +A  LFD +PE+N+VSW+ +I  +S NGF E+S      MM
Sbjct: 221 DVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMM 280

Query: 64  LS----GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL------------- 106
                   +P+  T+V VL   A  + + L + +HG  VK  L+ +L             
Sbjct: 281 EENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKC 340

Query: 107 ---------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFR-----GSGLVPNAVT 152
                    F+   N  +VS N +V GF            F+  R     G  +  + VT
Sbjct: 341 GCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGT---FDVLRQMLAGGEDVKADEVT 397

Query: 153 MLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME 212
           +L  +  C         + +H  ++K   + +  V N+ +  Y+    L  A ++F  + 
Sbjct: 398 ILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIR 457

Query: 213 CKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQ 272
            K V SW  ++G          +L    +M+ S ++ D+  + +L+S  + L  L+ GK+
Sbjct: 458 SKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKE 517

Query: 273 LHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC 332
           +H  ++   L+ +L +  S++++Y  CG+L + +++F+ + +KSLVSW  +I+GY+QNG 
Sbjct: 518 VHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGF 577

Query: 333 AREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN 392
              AL  F +M       +  I+++ +  A   L +L +  + H  A +        +  
Sbjct: 578 PDRALGVFRQMVLYGI-QLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIAC 636

Query: 393 CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV 452
            LI  Y+K G++  +  VF  +   +   SWN +I GYG++G  + A+ L+ +M  TG  
Sbjct: 637 SLIDMYAKNGSITQSSKVFNGLK-EKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHN 695

Query: 453 PDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA-S 511
           PD  T+L +L AC H+GL ++GL   +QM     +KP+ +HY CV+D+L RAG L  A  
Sbjct: 696 PDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALR 755

Query: 512 GLAGKLLEGMGPNIWRALLSGCVLH 536
            +A ++ E     IW++LLS C +H
Sbjct: 756 VVAEEMSEEADVGIWKSLLSSCRIH 780



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 154/583 (26%), Positives = 278/583 (47%), Gaps = 50/583 (8%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM-LSGL 67
           +++++ Y   G   ++  +FD +  KN+  W+ VI  YS N  +++ ++ F  M+  + L
Sbjct: 124 TRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDL 183

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG------------------ 109
           LP+ FT   V+ A AG+ ++ +  ++HGL+VK GL  D+F G                  
Sbjct: 184 LPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQ 243

Query: 110 ----LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFF---RGSG-LVPNAVTMLTVIRGCV 161
               +    LVS N+++  F +N   +++ LL        G G  +P+  T++TV+  C 
Sbjct: 244 LFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCA 303

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
                 L + +HG  +KL L  ++ +NN+++DMYS    +  A  IF+    K+V+SW  
Sbjct: 304 REREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNT 363

Query: 222 MMGLFVDFEYAGDALKIFREMRK-----SRIICDTVALLNLISVNAILGDLKRGKQLHAQ 276
           M+G    F   GD    F  +R+       +  D V +LN + V      L   K+LH  
Sbjct: 364 MVG---GFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCY 420

Query: 277 VVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
            +         ++N+ +A Y+KCG L  ++ VF+ I  K++ SW A+I G+ Q+   R +
Sbjct: 421 SLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLS 480

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
           L+  ++M+       DS T+ S+L+A  +L +L +  ++HG        R   V   ++S
Sbjct: 481 LDAHLQMKISGLLP-DSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLS 539

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
            Y  CG +     +F+ M   + +VSWNT+I GY  NG  + AL ++ +M   G      
Sbjct: 540 LYIHCGELCTVQALFDAMED-KSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGI 598

Query: 457 TYLSILNACG-----HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDAS 511
           + + +  AC        G       + + + ++  +  S      ++D+ A+ G ++ +S
Sbjct: 599 SMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACS------LIDMYAKNGSITQSS 652

Query: 512 GLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKG 554
            +   L E    + W A++ G  +H G  ++A  L    Q+ G
Sbjct: 653 KVFNGLKEKSTAS-WNAMIMGYGIH-GLAKEAIKLFEEMQRTG 693



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 121/481 (25%), Positives = 218/481 (45%), Gaps = 28/481 (5%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSG--LL 68
           L+  Y K G I  A+ +F     KNVVSW+ ++ G+S  G    +      M+  G  + 
Sbjct: 333 LMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVK 392

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVK----------------------FGLESDL 106
            +  T++  +        L   + +H   +K                            +
Sbjct: 393 ADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRV 452

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           F G+++  + S NA++ G   +   + ++      + SGL+P++ T+ +++  C  L S 
Sbjct: 453 FHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSL 512

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
            L + +HG  I+  L  D+ V  SVL +Y    +L     +F  ME K ++SW  ++  +
Sbjct: 513 RLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGY 572

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
           +   +   AL +FR+M    I    ++++ +    ++L  L+ G++ HA  +   L+ + 
Sbjct: 573 LQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDA 632

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            ++ S+I MY+K G +  S  VFN + EKS  SW A+I GY  +G A+EA+  F +M Q 
Sbjct: 633 FIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEM-QR 691

Query: 347 KTDSVDSITLVSILTASGELAALEICLQ-LHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
              + D +T + +LTA      +   L+ L  +    G         C+I    + G +D
Sbjct: 692 TGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLD 751

Query: 406 LAY-IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTE-TGEVPDSSTYLSILN 463
            A  +V EEM    DV  W +++    ++ + E    +  K+ E   E P++   LS L 
Sbjct: 752 KALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLY 811

Query: 464 A 464
           A
Sbjct: 812 A 812



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 148/308 (48%), Gaps = 25/308 (8%)

Query: 212 ECKDVISWTRMMGLFV-DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG 270
           E  D+    R +  FV D E + DA  + RE           AL  L+  +    D++ G
Sbjct: 55  ETGDLDKSFRTVQEFVGDDESSSDAFLLVRE-----------ALGLLLQASGKRKDIEMG 103

Query: 271 KQLHAQVVLGG--LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYV 328
           +++H Q+V G   L+++  L   II MY+ CG  D SR VF+ +  K+L  W A+IS Y 
Sbjct: 104 RKIH-QLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYS 162

Query: 329 QNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYR 388
           +N    E L  FI+M        D  T   ++ A   ++ + I L +HG+  + G     
Sbjct: 163 RNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDV 222

Query: 389 SVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETA-LALYHKMT 447
            V N L+S Y   G V  A  +F+ M   R++VSWN++I  +  NG  E + L L   M 
Sbjct: 223 FVGNALVSFYGTHGFVTDALQLFDIMP-ERNLVSWNSMIRVFSDNGFSEESFLLLGEMME 281

Query: 448 ETGE---VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY--GCVVDLLA 502
           E G+   +PD +T +++L  C        G  +    +   K++  +E      ++D+ +
Sbjct: 282 ENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAV---KLRLDKELVLNNALMDMYS 338

Query: 503 RAGCLSDA 510
           + GC+++A
Sbjct: 339 KCGCITNA 346


>gi|224124454|ref|XP_002330027.1| predicted protein [Populus trichocarpa]
 gi|222871452|gb|EEF08583.1| predicted protein [Populus trichocarpa]
          Length = 502

 Score =  236 bits (601), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 138/425 (32%), Positives = 241/425 (56%), Gaps = 6/425 (1%)

Query: 115 LVSCNAIVAGFINNKLFQQAVLLF-NFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIH 173
           +V+  A+++G+ +   + QA  +F +  +   + PNA T+ +V++ C  + S     L+H
Sbjct: 6   VVALTAMISGYTHCNEYTQAWSVFVDMVKNDNVPPNAFTISSVLKACKGMNSVFCGGLVH 65

Query: 174 GLTIKLGLILD-VSVNNSVLDMY-SCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           GL IK   +   + V+N+++DMY +C + +  A  +F +++ K+V+SWT ++  +     
Sbjct: 66  GLAIKRRFVEGFIYVDNALMDMYATCGVTMRDACVVFHDIKEKNVVSWTTLIAGYTHRGN 125

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
              A+++FRE+       +  ++   +   A +G    G+Q+H  V+  G +S+L + NS
Sbjct: 126 GSRAVQVFREISLEGAELNPHSISIAVRACASVGSNILGRQIHTAVIKHGFESDLPVMNS 185

Query: 292 IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
           I+ MY +CG L  ++  FN+++EK L++W  +I+GY ++  + E L  F +M  E   S 
Sbjct: 186 ILDMYCRCGCLSEAKEYFNEMSEKDLITWNTLIAGYERSD-SIEPLFIFSQMESEGF-SP 243

Query: 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVF 411
           +  T  S++ A    AAL+   Q+HG  F  G      + N LI  Y+KCGN+  +   F
Sbjct: 244 NCFTFTSLVAACANAAALQCGQQVHGGIFRRGLDGNLELANALIDMYAKCGNIIDSQKNF 303

Query: 412 EEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLT 471
            EM    ++VSW +++ GYG +G+G+ A+ L+ +M  +G  PD   ++++L+AC HAGL 
Sbjct: 304 SEMS-CTNLVSWTSMMIGYGTHGYGKEAVELFDEMVRSGIRPDQVVFMAVLHACSHAGLV 362

Query: 472 NDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLS 531
           + GL  FN M+++  +KP+QE YGCVV LL RAG + +A  L   +      ++W ALL 
Sbjct: 363 DQGLRYFNCMLDDYHIKPNQEIYGCVVGLLGRAGRVEEAYHLIRSMPFMADESVWGALLG 422

Query: 532 GCVLH 536
            C  H
Sbjct: 423 ACKAH 427



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 108/425 (25%), Positives = 204/425 (48%), Gaps = 32/425 (7%)

Query: 31  IPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS-GLLPNSFTMVGVLVAAAGLQNLEL 89
           +PE++VV+ + +I GY+    + ++   F  M+ +  + PN+FT+  VL A  G+ ++  
Sbjct: 1   MPERDVVALTAMISGYTHCNEYTQAWSVFVDMVKNDNVPPNAFTISSVLKACKGMNSVFC 60

Query: 90  ARSIHGLMVKFGLESD------------------------LFEGLKNPYLVSCNAIVAGF 125
              +HGL +K                              +F  +K   +VS   ++AG+
Sbjct: 61  GGLVHGLAIKRRFVEGFIYVDNALMDMYATCGVTMRDACVVFHDIKEKNVVSWTTLIAGY 120

Query: 126 INNKLFQQAVLLFN--FFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLIL 183
            +     +AV +F      G+ L P+++++   +R C ++GS  L   IH   IK G   
Sbjct: 121 THRGNGSRAVQVFREISLEGAELNPHSISI--AVRACASVGSNILGRQIHTAVIKHGFES 178

Query: 184 DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMR 243
           D+ V NS+LDMY     L  A + F EM  KD+I+W  ++  + +   + + L IF +M 
Sbjct: 179 DLPVMNSILDMYCRCGCLSEAKEYFNEMSEKDLITWNTLIAGY-ERSDSIEPLFIFSQME 237

Query: 244 KSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLD 303
                 +     +L++  A    L+ G+Q+H  +   GL   L L+N++I MY+KCG++ 
Sbjct: 238 SEGFSPNCFTFTSLVAACANAAALQCGQQVHGGIFRRGLDGNLELANALIDMYAKCGNII 297

Query: 304 SSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTAS 363
            S+  F++++  +LVSWT+++ GY  +G  +EA+  F +M +      D +  +++L A 
Sbjct: 298 DSQKNFSEMSCTNLVSWTSMMIGYGTHGYGKEAVELFDEMVRSGIRP-DQVVFMAVLHAC 356

Query: 364 GELAALEICLQLHGIAFEA-GFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVS 422
                ++  L+      +       + +  C++    + G V+ AY +   M F+ D   
Sbjct: 357 SHAGLVDQGLRYFNCMLDDYHIKPNQEIYGCVVGLLGRAGRVEEAYHLIRSMPFMADESV 416

Query: 423 WNTII 427
           W  ++
Sbjct: 417 WGALL 421



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 139/288 (48%), Gaps = 24/288 (8%)

Query: 6   YNSSKLLSNYFKSG-KIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML 64
           Y  + L+  Y   G  +++A  +F +I EKNVVSW+ +I GY+  G   ++++ F  + L
Sbjct: 79  YVDNALMDMYATCGVTMRDACVVFHDIKEKNVVSWTTLIAGYTHRGNGSRAVQVFREISL 138

Query: 65  SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL------------------ 106
            G   N  ++   + A A + +  L R IH  ++K G ESDL                  
Sbjct: 139 EGAELNPHSISIAVRACASVGSNILGRQIHTAVIKHGFESDLPVMNSILDMYCRCGCLSE 198

Query: 107 ----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA 162
               F  +    L++ N ++AG+  +    + + +F+     G  PN  T  +++  C  
Sbjct: 199 AKEYFNEMSEKDLITWNTLIAGYERSDSI-EPLFIFSQMESEGFSPNCFTFTSLVAACAN 257

Query: 163 LGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
             +    + +HG   + GL  ++ + N+++DMY+   ++  + + F EM C +++SWT M
Sbjct: 258 AAALQCGQQVHGGIFRRGLDGNLELANALIDMYAKCGNIIDSQKNFSEMSCTNLVSWTSM 317

Query: 223 MGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG 270
           M  +    Y  +A+++F EM +S I  D V  + ++   +  G + +G
Sbjct: 318 MIGYGTHGYGKEAVELFDEMVRSGIRPDQVVFMAVLHACSHAGLVDQG 365



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 107/223 (47%), Gaps = 5/223 (2%)

Query: 312 ITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEI 371
           + E+ +V+ TA+ISGY       +A + F+ M +      ++ T+ S+L A   + ++  
Sbjct: 1   MPERDVVALTAMISGYTHCNEYTQAWSVFVDMVKNDNVPPNAFTISSVLKACKGMNSVFC 60

Query: 372 CLQLHGIAFEAGFPR-YRSVQNCLISSYSKCG-NVDLAYIVFEEMGFLRDVVSWNTIIYG 429
              +HG+A +  F   +  V N L+  Y+ CG  +  A +VF ++   ++VVSW T+I G
Sbjct: 61  GGLVHGLAIKRRFVEGFIYVDNALMDMYATCGVTMRDACVVFHDIK-EKNVVSWTTLIAG 119

Query: 430 YGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKP 489
           Y   G+G  A+ ++ +++  G   +  +    + AC   G    G  I   +I+    + 
Sbjct: 120 YTHRGNGSRAVQVFREISLEGAELNPHSISIAVRACASVGSNILGRQIHTAVIKHG-FES 178

Query: 490 SQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSG 532
                  ++D+  R GCLS+A     ++ E      W  L++G
Sbjct: 179 DLPVMNSILDMYCRCGCLSEAKEYFNEMSE-KDLITWNTLIAG 220


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  236 bits (601), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 170/599 (28%), Positives = 281/599 (46%), Gaps = 103/599 (17%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  D ++ + +L+ Y ++ ++ +A  LFD +PEK+VVSW+ ++ GY+ NG+ +++ + F 
Sbjct: 107 PERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFD 166

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNA 120
           +M       NS +  G+L A      +E A               LFE   +  L+S N 
Sbjct: 167 NMPEK----NSISWNGLLAAYVHNGRIEEA-------------CLLFESKSDWDLISWNC 209

Query: 121 IVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLG 180
           ++ GF+  K    A  LF+       V +A++  T+I G    G                
Sbjct: 210 LMGGFVRKKKLGDARWLFDKMP----VRDAISWNTMISGYAQGGG--------------- 250

Query: 181 LILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFR 240
                               L  A ++F E   +DV +WT M+  +V      +A   F 
Sbjct: 251 --------------------LSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFD 290

Query: 241 EMRKSRIICDTVALLNLISVNAILGDLKRGKQLH-AQVVLGGLQ-SELRLSNSIIAMYSK 298
           EM +           N +S NA++    + K++  A+ +   +    +   N++I  Y +
Sbjct: 291 EMPEK----------NEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQ 340

Query: 299 CGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVS 358
            GD+  +R  F+ + ++  VSW AII+GY Q+G   EALN F++++Q+  +S++  T   
Sbjct: 341 IGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQD-GESLNRATFGC 399

Query: 359 ILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLR 418
            L+   ++AALE+  Q+HG A + G+     V N L++ Y KCG++D A   FE +   +
Sbjct: 400 ALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIE-EK 458

Query: 419 DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIF 478
           DVVSWNT++ GY  +G G  AL ++  M   G  PD  T + +L+AC H GL + G   F
Sbjct: 459 DVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYF 518

Query: 479 NQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH-- 536
             M ++  V P+ +HY C++DLL RAG L +A  L   +    G   W ALL    +H  
Sbjct: 519 YSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGN 578

Query: 537 -------------------------------VGRFQDAEALRSGSQKKGIIKIPGISFL 564
                                           GR+ DA+ +RS  +  G+ K+PG S++
Sbjct: 579 TELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWV 637



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 101/380 (26%), Positives = 182/380 (47%), Gaps = 30/380 (7%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F  +     VS NA+++G++ N  F  A  LF+      L    V +   +R C    +
Sbjct: 71  VFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDA 130

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
           R L +L+           DV   NS+L  Y+    +D A ++F  M  K+ ISW  ++  
Sbjct: 131 RRLFDLMPE--------KDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAA 182

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQL-HAQVVLGGLQS 284
           +V      +A  +F          ++ +  +LIS N ++G   R K+L  A+ +   +  
Sbjct: 183 YVHNGRIEEACLLF----------ESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPV 232

Query: 285 ELRLS-NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
              +S N++I+ Y++ G L  +R +F++   + + +WTA++SGYVQNG   EA   F +M
Sbjct: 233 RDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEM 292

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
            ++     + ++  +++    +   ++I  +L    FE+   R  S  N +I+ Y + G+
Sbjct: 293 PEK-----NEVSYNAMIAGYVQTKKMDIAREL----FESMPCRNISSWNTMITGYGQIGD 343

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           +  A   F+ M   RD VSW  II GY  +GH E AL ++ ++ + GE  + +T+   L+
Sbjct: 344 IAQARKFFDMMP-QRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALS 402

Query: 464 ACGHAGLTNDGLVIFNQMIE 483
            C        G  I  Q ++
Sbjct: 403 TCADIAALELGKQIHGQAVK 422



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 109/247 (44%), Gaps = 24/247 (9%)

Query: 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD 349
           N  I+ + + G  DS+  VFN +  +S VS+ A+ISGY++N     A N F +M +    
Sbjct: 53  NKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPER--- 109

Query: 350 SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYI 409
             D  +   +LT       L    +L  +  E     +    N L+S Y++ G VD A  
Sbjct: 110 --DLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSW----NSLLSGYAQNGYVDEARE 163

Query: 410 VFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAG 469
           VF+ M   ++ +SWN ++  Y  NG  E A  L+   ++     D  ++  ++       
Sbjct: 164 VFDNMP-EKNSISWNGLLAAYVHNGRIEEACLLFESKSDW----DLISWNCLMGGFVRKK 218

Query: 470 LTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI--WR 527
              D   +F++M   + +      +  ++   A+ G LS A  L     E    ++  W 
Sbjct: 219 KLGDARWLFDKMPVRDAIS-----WNTMISGYAQGGGLSQARRL---FDESPTRDVFTWT 270

Query: 528 ALLSGCV 534
           A++SG V
Sbjct: 271 AMVSGYV 277



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 97/217 (44%), Gaps = 23/217 (10%)

Query: 305 SRSVFN----QITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSIL 360
           S SV N    ++ +  ++ W   IS +++NG    AL+ F  M +  + S +++      
Sbjct: 33  SESVTNNNKPRVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMI----- 87

Query: 361 TASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDV 420
             SG L   +  L  +   F+    R     N +++ Y +   +  A  +F+ M   +DV
Sbjct: 88  --SGYLRNSKFNLARN--LFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMP-EKDV 142

Query: 421 VSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQ 480
           VSWN+++ GY  NG+ + A  ++  M E     +S ++  +L A  H G   +  ++F  
Sbjct: 143 VSWNSLLSGYAQNGYVDEAREVFDNMPEK----NSISWNGLLAAYVHNGRIEEACLLF-- 196

Query: 481 MIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL 517
              E+K       + C++    R   L DA  L  K+
Sbjct: 197 ---ESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKM 230


>gi|449496714|ref|XP_004160205.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g11290-like [Cucumis sativus]
          Length = 616

 Score =  236 bits (601), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 150/494 (30%), Positives = 253/494 (51%), Gaps = 37/494 (7%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F+ +  P +V+ N++V G++       AV LF      G+ P   ++   + GC  L  
Sbjct: 125 VFDEMSCPSVVTWNSLVTGYLQAGYPLMAVSLFLEMLKKGIEPTPFSLSGGLVGCSQLQK 184

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
             L   +H +++KL    +V V   ++DMYS   +L  + ++F  M  K+V +WT M+  
Sbjct: 185 GDLGSQLHAMSLKLRFSSNVVVGTGLIDMYSKCCNLQDSRRVFDIMLNKNVFTWTSMISG 244

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +   +   +A+ + REM    +  + +   +L+S  +      + KQ+H +++  G +S 
Sbjct: 245 YARNQLPHEAMXLMREMLHLNLEPNGMTYNSLLSSFSCPRHFDKCKQIHCRIITEGYESN 304

Query: 286 LRLSNSIIAMYSKC-GDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
             ++ +++  YS+C G L+  R V + I     +SW A+I+G+   G   EAL  FI+MR
Sbjct: 305 NYIAVTLVTAYSECCGSLEDYRKVCSNIRMSDQISWNAVIAGFTNLGIGEEALECFIQMR 364

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
           +EK D VD  T  SI  A G  +ALE   Q+HG+ ++ G+    SVQN L+S Y++ G +
Sbjct: 365 REKFD-VDFFTFTSIFKAIGMTSALEEGKQIHGLVYKTGYTLNLSVQNGLVSMYARSGAI 423

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
             + +VF  M    D++SWN+++ G   +G GE A+ L+ KM  T   PD++++L++L A
Sbjct: 424 RDSKMVFSMMN-EHDLISWNSLLSGCAYHGCGEEAIDLFEKMRRTCIKPDNTSFLAVLTA 482

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQ-EHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
           C H GL + GL  F  M     V+P + EHY  +VDL  RAG L +A      +    G 
Sbjct: 483 CSHVGLLDKGLEYFKLMRNSELVEPPKLEHYATLVDLFGRAGKLYEAEAFIESIPIEPGI 542

Query: 524 NIWRALLSGCVLH------------------------------VGR---FQDAEALRSGS 550
           +I++ALLS C++H                              +GR   + DA ++R   
Sbjct: 543 SIYKALLSACLIHGNKDIAIRTAKKLLELYPYDPATYIMLSNALGRDGYWDDAASIRRLM 602

Query: 551 QKKGIIKIPGISFL 564
             +G+ K PG S++
Sbjct: 603 SNRGVKKEPGFSWM 616



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 117/504 (23%), Positives = 229/504 (45%), Gaps = 27/504 (5%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           ++PY  + L+  Y K   I +A  +FDE+   +VV+W+ ++ GY   G+   ++  F  M
Sbjct: 101 LNPYIFTALVDMYGKCWSISDAHKVFDEMSCPSVVTWNSLVTGYLQAGYPLMAVSLFLEM 160

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPYLVSCN- 119
           +  G+ P  F++ G LV  + LQ  +L   +H + +K    S++    GL + Y   CN 
Sbjct: 161 LKKGIEPTPFSLSGGLVGCSQLQKGDLGSQLHAMSLKLRFSSNVVVGTGLIDMYSKCCNL 220

Query: 120 -------------------AIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                              ++++G+  N+L  +A+ L        L PN +T  +++   
Sbjct: 221 QDSRRVFDIMLNKNVFTWTSMISGYARNQLPHEAMXLMREMLHLNLEPNGMTYNSLLSSF 280

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYS-CLMDLDAAIQIFREMECKDVISW 219
                   C+ IH   I  G   +  +  +++  YS C   L+   ++   +   D ISW
Sbjct: 281 SCPRHFDKCKQIHCRIITEGYESNNYIAVTLVTAYSECCGSLEDYRKVCSNIRMSDQISW 340

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
             ++  F +     +AL+ F +MR+ +   D     ++     +   L+ GKQ+H  V  
Sbjct: 341 NAVIAGFTNLGIGEEALECFIQMRREKFDVDFFTFTSIFKAIGMTSALEEGKQIHGLVYK 400

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G    L + N +++MY++ G +  S+ VF+ + E  L+SW +++SG   +GC  EA++ 
Sbjct: 401 TGYTLNLSVQNGLVSMYARSGAIRDSKMVFSMMNEHDLISWNSLLSGCAYHGCGEEAIDL 460

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN--CLISS 397
           F KMR+      D+ + +++LTA   +  L+  L+   +   +       +++   L+  
Sbjct: 461 FEKMRRTCIKP-DNTSFLAVLTACSHVGLLDKGLEYFKLMRNSELVEPPKLEHYATLVDL 519

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           + + G +  A    E +     +  +  ++    ++G+ + A+    K+ E     D +T
Sbjct: 520 FGRAGKLYEAEAFIESIPIEPGISIYKALLSACLIHGNKDIAIRTAKKLLELYPY-DPAT 578

Query: 458 YLSILNACGHAGLTNDGLVIFNQM 481
           Y+ + NA G  G  +D   I   M
Sbjct: 579 YIMLSNALGRDGYWDDAASIRRLM 602



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 103/368 (27%), Positives = 175/368 (47%), Gaps = 9/368 (2%)

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           +H   IKLG  L+  +  +++DMY     +  A ++F EM C  V++W  ++  ++   Y
Sbjct: 90  VHSTIIKLGFSLNPYIFTALVDMYGKCWSISDAHKVFDEMSCPSVVTWNSLVTGYLQAGY 149

Query: 232 AGDALKIFREMRKSRIICDTVALL-NLISVNAIL-GDLKRGKQLHAQVVLGGLQSELRLS 289
              A+ +F EM K  I     +L   L+  + +  GDL  G QLHA  +     S + + 
Sbjct: 150 PLMAVSLFLEMLKKGIEPTPFSLSGGLVGCSQLQKGDL--GSQLHAMSLKLRFSSNVVVG 207

Query: 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD 349
             +I MYSKC +L  SR VF+ +  K++ +WT++ISGY +N    EA+    +M     +
Sbjct: 208 TGLIDMYSKCCNLQDSRRVFDIMLNKNVFTWTSMISGYARNQLPHEAMXLMREMLHLNLE 267

Query: 350 SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK-CGNVDLAY 408
             + +T  S+L++       + C Q+H      G+     +   L+++YS+ CG+++   
Sbjct: 268 P-NGMTYNSLLSSFSCPRHFDKCKQIHCRIITEGYESNNYIAVTLVTAYSECCGSLEDYR 326

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
            V   +  + D +SWN +I G+   G GE AL  + +M       D  T+ SI  A G  
Sbjct: 327 KVCSNIR-MSDQISWNAVIAGFTNLGIGEEALECFIQMRREKFDVDFFTFTSIFKAIGMT 385

Query: 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRA 528
               +G  I   + +           G +V + AR+G + D S +   ++       W +
Sbjct: 386 SALEEGKQIHGLVYKTGYTLNLSVQNG-LVSMYARSGAIRD-SKMVFSMMNEHDLISWNS 443

Query: 529 LLSGCVLH 536
           LLSGC  H
Sbjct: 444 LLSGCAYH 451



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 102/198 (51%), Gaps = 2/198 (1%)

Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISG 326
           L  G Q+H+ ++  G      +  +++ MY KC  +  +  VF++++  S+V+W ++++G
Sbjct: 84  LDFGIQVHSTIIKLGFSLNPYIFTALVDMYGKCWSISDAHKVFDEMSCPSVVTWNSLVTG 143

Query: 327 YVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPR 386
           Y+Q G    A++ F++M ++  +     +L   L    +L   ++  QLH ++ +  F  
Sbjct: 144 YLQAGYPLMAVSLFLEMLKKGIEPT-PFSLSGGLVGCSQLQKGDLGSQLHAMSLKLRFSS 202

Query: 387 YRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM 446
              V   LI  YSKC N+  +  VF+ M   ++V +W ++I GY  N     A+ L  +M
Sbjct: 203 NVVVGTGLIDMYSKCCNLQDSRRVFDIM-LNKNVFTWTSMISGYARNQLPHEAMXLMREM 261

Query: 447 TETGEVPDSSTYLSILNA 464
                 P+  TY S+L++
Sbjct: 262 LHLNLEPNGMTYNSLLSS 279



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 5/119 (4%)

Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
           + L Q ++     T  + + T +SI T S     L+  +Q+H    + GF     +   L
Sbjct: 54  QFLVQLLRHGSPPTPPILTKT-ISICTKS---TLLDFGIQVHSTIIKLGFSLNPYIFTAL 109

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           +  Y KC ++  A+ VF+EM     VV+WN+++ GY   G+   A++L+ +M + G  P
Sbjct: 110 VDMYGKCWSISDAHKVFDEMS-CPSVVTWNSLVTGYLQAGYPLMAVSLFLEMLKKGIEP 167


>gi|302773754|ref|XP_002970294.1| hypothetical protein SELMODRAFT_93439 [Selaginella moellendorffii]
 gi|300161810|gb|EFJ28424.1| hypothetical protein SELMODRAFT_93439 [Selaginella moellendorffii]
          Length = 1096

 Score =  236 bits (601), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 156/558 (27%), Positives = 270/558 (48%), Gaps = 39/558 (6%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEI-PEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           +D    +  +S + K G +  A ++F+ +   +NVVSW+++I  Y+  GF   +   +  
Sbjct: 362 LDTTLGTAFVSTFAKLGDLAAARDVFENLGSSRNVVSWTVMIWAYAQQGFIRAAFDLYKR 421

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------- 105
           M      PN+ T + V+ +    ++L  A  IH  MV  G ESD                
Sbjct: 422 MDCE---PNAVTFMAVMDSCLRPEDLPRAEQIHAHMVASGFESDVVLQVCLVTMYGKCGS 478

Query: 106 ------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                 +FE LK   +V+ N++++ F +N  +++++ L+      G  P+ +T L V+  
Sbjct: 479 VDSAWSIFENLKERSVVAWNSMLSAFASNGCYERSLKLYERMLLEGTKPDKITYLAVLDA 538

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKD-VIS 218
           C ++                 L LD++  N+ +  Y+    L  A   F  ++ K+  ++
Sbjct: 539 CQSVSE------ARRYAATFELELDIAARNAAVSAYARCGSLKEAKAAFDAIQWKNNAVT 592

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           W  M+        +  AL+ F +M    +  ++V  L  +   + L DL RG+QLHA+++
Sbjct: 593 WNAMISGLAQHGESKQALECFWKMELEGVRANSVTYLASLEACSSLKDLTRGRQLHARIL 652

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
           L  +  E  LSN++I MY KCG LD +   F ++ E+ ++SW  +I+ Y Q+G  R+AL 
Sbjct: 653 LENIH-EANLSNAVINMYGKCGSLDEAMDEFVKMPERDVISWNTMIATYAQHGSGRQALE 711

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG--FPRYRSVQNCLIS 396
            F +M  E   + D  T +  + A G + +L +   +H I   A     +   V   L++
Sbjct: 712 FFKQMDLEGW-TPDRATYLGAIDACGSVPSLALGKTIHSIVATAAPCLEQDPGVATALVT 770

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
            Y++CG++  A  VF      R++V+W+ +I     +G    AL L+ +M   G  PD+ 
Sbjct: 771 MYARCGSLHDAKSVFWR-SHSRNLVTWSNLIAACAQHGRENEALDLFREMQLQGTKPDAL 829

Query: 457 TYLSILNACGHAGLTND-GLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAG 515
           T+ +++ AC   G+  D G  IF+ +     V  S EHYGC+V++L RAG L +A GL  
Sbjct: 830 TFSTLVAACSRRGVVKDGGRRIFDALGRVYPVSASAEHYGCMVEVLGRAGKLEEAEGLIQ 889

Query: 516 KLLEGMGPNIWRALLSGC 533
            +       IW ALL+ C
Sbjct: 890 GMPRKASGAIWMALLAAC 907



 Score =  226 bits (576), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 151/525 (28%), Positives = 267/525 (50%), Gaps = 46/525 (8%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSG-LLPNSFT 73
           Y K G++ EA+ +F+ +PE+N+VSW+ +I   + NG  + +M+ F  M L G + PN  T
Sbjct: 171 YGKCGRVHEAKAVFERLPERNLVSWNALIAANAQNGHCKDAMQVFQLMDLDGSVRPNDAT 230

Query: 74  MVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPY----------------- 114
            V V+ A + L +L   +S H  +++ G +S LF G  L N Y                 
Sbjct: 231 FVSVVDACSNLLDLPRGKSTHERIIRTGFDSYLFVGNSLVNMYGKCGSVDHARLVFEKMR 290

Query: 115 ------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
                 + S   I+A F +N    +A +LF      G++PN VT +TV+R C  L   A 
Sbjct: 291 LRDVLSVYSWTVIIAAFAHNGHLLEAFVLFYKMDLEGVLPNKVTFVTVLRACTTL---AQ 347

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM-ECKDVISWTRMMGLFV 227
           CE I      LGL LD ++  + +  ++ L DL AA  +F  +   ++V+SWT M+  + 
Sbjct: 348 CEKIFARVKHLGLELDTTLGTAFVSTFAKLGDLAAARDVFENLGSSRNVVSWTVMIWAYA 407

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILG--DLKRGKQLHAQVVLGGLQSE 285
              +   A  +++     R+ C+  A+  +  +++ L   DL R +Q+HA +V  G +S+
Sbjct: 408 QQGFIRAAFDLYK-----RMDCEPNAVTFMAVMDSCLRPEDLPRAEQIHAHMVASGFESD 462

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           + L   ++ MY KCG +DS+ S+F  + E+S+V+W +++S +  NGC   +L  + +M  
Sbjct: 463 VVLQVCLVTMYGKCGSVDSAWSIFENLKERSVVAWNSMLSAFASNGCYERSLKLYERMLL 522

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
           E T   D IT +++L A   ++      + +   FE       + +N  +S+Y++CG++ 
Sbjct: 523 EGTKP-DKITYLAVLDACQSVSE----ARRYAATFELELD--IAARNAAVSAYARCGSLK 575

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            A   F+ + +  + V+WN +I G   +G  + AL  + KM   G   +S TYL+ L AC
Sbjct: 576 EAKAAFDAIQWKNNAVTWNAMISGLAQHGESKQALECFWKMELEGVRANSVTYLASLEAC 635

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
                   G  +  +++ EN  + +  +   V+++  + G L +A
Sbjct: 636 SSLKDLTRGRQLHARILLENIHEANLSN--AVINMYGKCGSLDEA 678



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 148/560 (26%), Positives = 259/560 (46%), Gaps = 41/560 (7%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           ++ Y  + L+  Y K G +++A  +F+ +P  NV SW+ +I  Y+  G   + +  F  M
Sbjct: 59  VNRYLQNHLIFMYAKCGCLQDAVEVFELLPCPNVFSWTALITAYAKEGHLREVLGFFRKM 118

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
            L G  P++F    VL A +    L   ++IH  +V  G+E+                  
Sbjct: 119 QLDGTKPDAFVFSTVLTACSSAGALNEGKAIHDCVVLAGMETQVVGNAIVNLYGKCGRVH 178

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLV-PNAVTMLTVIRGC 160
               +FE L    LVS NA++A    N   + A+ +F      G V PN  T ++V+  C
Sbjct: 179 EAKAVFERLPERNLVSWNALIAANAQNGHCKDAMQVFQLMDLDGSVRPNDATFVSVVDAC 238

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI--- 217
             L      +  H   I+ G    + V NS+++MY     +D A  +F +M  +DV+   
Sbjct: 239 SNLLDLPRGKSTHERIIRTGFDSYLFVGNSLVNMYGKCGSVDHARLVFEKMRLRDVLSVY 298

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           SWT ++  F    +  +A  +F +M    ++ + V  + ++     L   ++   + A+V
Sbjct: 299 SWTVIIAAFAHNGHLLEAFVLFYKMDLEGVLPNKVTFVTVLRACTTLAQCEK---IFARV 355

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQI-TEKSLVSWTAIISGYVQNGCAREA 336
              GL+ +  L  + ++ ++K GDL ++R VF  + + +++VSWT +I  Y Q G  R A
Sbjct: 356 KHLGLELDTTLGTAFVSTFAKLGDLAAARDVFENLGSSRNVVSWTVMIWAYAQQGFIRAA 415

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
            + + +M  E     +++T ++++ +      L    Q+H     +GF     +Q CL++
Sbjct: 416 FDLYKRMDCEP----NAVTFMAVMDSCLRPEDLPRAEQIHAHMVASGFESDVVLQVCLVT 471

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
            Y KCG+VD A+ +FE +   R VV+WN+++  +  NG  E +L LY +M   G  PD  
Sbjct: 472 MYGKCGSVDSAWSIFENLK-ERSVVAWNSMLSAFASNGCYERSLKLYERMLLEGTKPDKI 530

Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK 516
           TYL++L+AC            F   ++      +   Y       AR G L +A      
Sbjct: 531 TYLAVLDACQSVSEARRYAATFELELDIAARNAAVSAY-------ARCGSLKEAKAAFDA 583

Query: 517 LLEGMGPNIWRALLSGCVLH 536
           +        W A++SG   H
Sbjct: 584 IQWKNNAVTWNAMISGLAQH 603



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 99/317 (31%), Positives = 171/317 (53%), Gaps = 11/317 (3%)

Query: 155 TVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYS---CLMDLDAAIQIFREM 211
           ++++ C    S A  +L+H   +  G  ++  + N ++ MY+   CL D   A+++F  +
Sbjct: 31  SLLQKCAEQKSAAAGKLVHQHILSSGCGVNRYLQNHLIFMYAKCGCLQD---AVEVFELL 87

Query: 212 ECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGK 271
            C +V SWT ++  +    +  + L  FR+M+      D      +++  +  G L  GK
Sbjct: 88  PCPNVFSWTALITAYAKEGHLREVLGFFRKMQLDGTKPDAFVFSTVLTACSSAGALNEGK 147

Query: 272 QLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNG 331
            +H  VVL G+++++ + N+I+ +Y KCG +  +++VF ++ E++LVSW A+I+   QNG
Sbjct: 148 AIHDCVVLAGMETQV-VGNAIVNLYGKCGRVHEAKAVFERLPERNLVSWNALIAANAQNG 206

Query: 332 CAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ 391
             ++A+  F  M  + +   +  T VS++ A   L  L      H      GF  Y  V 
Sbjct: 207 HCKDAMQVFQLMDLDGSVRPNDATFVSVVDACSNLLDLPRGKSTHERIIRTGFDSYLFVG 266

Query: 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVV---SWNTIIYGYGVNGHGETALALYHKMTE 448
           N L++ Y KCG+VD A +VFE+M  LRDV+   SW  II  +  NGH   A  L++KM  
Sbjct: 267 NSLVNMYGKCGSVDHARLVFEKMR-LRDVLSVYSWTVIIAAFAHNGHLLEAFVLFYKMDL 325

Query: 449 TGEVPDSSTYLSILNAC 465
            G +P+  T++++L AC
Sbjct: 326 EGVLPNKVTFVTVLRAC 342



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 89/199 (44%), Gaps = 8/199 (4%)

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLI 395
           +L   I   ++ ++S+      S+L    E  +      +H     +G    R +QN LI
Sbjct: 9   SLQTHINQLKKSSESLQPARYASLLQKCAEQKSAAAGKLVHQHILSSGCGVNRYLQNHLI 68

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
             Y+KCG +  A  VFE +    +V SW  +I  Y   GH    L  + KM   G  PD+
Sbjct: 69  FMYAKCGCLQDAVEVFELLP-CPNVFSWTALITAYAKEGHLREVLGFFRKMQLDGTKPDA 127

Query: 456 STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAG 515
             + ++L AC  AG  N+G  I + ++       +Q     +V+L  + G + +A  +  
Sbjct: 128 FVFSTVLTACSSAGALNEGKAIHDCVVLAG--METQVVGNAIVNLYGKCGRVHEAKAVFE 185

Query: 516 KLLEGMGPNI--WRALLSG 532
           +L E    N+  W AL++ 
Sbjct: 186 RLPE---RNLVSWNALIAA 201


>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
           [Vitis vinifera]
 gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
          Length = 618

 Score =  236 bits (601), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 155/501 (30%), Positives = 251/501 (50%), Gaps = 38/501 (7%)

Query: 100 FGLESDLFEGLKNPYLVSCNAIVAGFINN-KLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
           F   S LF  +  P   + N ++ G     + F   +  +   +  G+ PN  T   V  
Sbjct: 75  FNNASLLFSQIPYPNEYAFNIMIRGLTTTWQKFNLTIEFYYQMKDFGIRPNNFTYPFVFI 134

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C  L      +  H   +K GL  D  V +S++ MYS   +L  A ++F E+  KD++S
Sbjct: 135 ACANLLVLNHGQCAHSGVLKSGLCADGHVRHSLITMYSRCGELGCARRVFDEISEKDLVS 194

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           W  M+  +    YAGDA+ +F EMR +    D + L++++     LGDL  G  +   VV
Sbjct: 195 WNSMISGYSRMGYAGDAVGLFGEMRDAGFEPDEMTLVSILGACGDLGDLGLGSWIEGFVV 254

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
              +     + +++I MY KCGDL S+R VF+++ +K +V+W A+I+GY QNG + EA+ 
Sbjct: 255 ENEMDLNSFVGSALIGMYGKCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVSDEAII 314

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
            F  MR+   +  D ITLV +L+A   + AL+    L   A E G      V   LI  Y
Sbjct: 315 LFSGMRESGVNP-DKITLVGVLSACASIGALDFGKWLDTYASERGLQNDIYVSTALIDMY 373

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV--PDSS 456
           +KCG++D A  VFE+M   ++ VSWN +I     +G  + +L+L+ +M++ G    P+  
Sbjct: 374 AKCGSLDDALRVFEDMP-QKNEVSWNAMISALAFHGRPQESLSLFKRMSKEGGAVRPNDI 432

Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK 516
           +++ +L+AC HAGL ++G  +F+ M     + P  EH+ C+VDLLARAG + +A     K
Sbjct: 433 SFIGVLSACVHAGLVDEGRQLFDLMSSSFGLVPKIEHHSCMVDLLARAGHVHEAWDFIEK 492

Query: 517 LLEGMGPNIWRALLSGC-----------VLH----------------------VGRFQDA 543
           + E     +  ALL  C           V+H                      + R+ D+
Sbjct: 493 MPEKPDEVVLGALLGACQKRRNVDVSERVMHMLLEMEPLNSGNYIISSKIFANMKRWDDS 552

Query: 544 EALRSGSQKKGIIKIPGISFL 564
             +R   +++G+ K PG S++
Sbjct: 553 ARMRVLMRQRGVTKTPGCSWI 573



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 115/429 (26%), Positives = 207/429 (48%), Gaps = 25/429 (5%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS-GLLP 69
           LL  +        A  LF +IP  N  +++I+I G +           F + M   G+ P
Sbjct: 65  LLHRFIDLKDFNNASLLFSQIPYPNEYAFNIMIRGLTTTWQKFNLTIEFYYQMKDFGIRP 124

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LF 107
           N+FT   V +A A L  L   +  H  ++K GL +D                      +F
Sbjct: 125 NNFTYPFVFIACANLLVLNHGQCAHSGVLKSGLCADGHVRHSLITMYSRCGELGCARRVF 184

Query: 108 EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRA 167
           + +    LVS N++++G+        AV LF   R +G  P+ +T+++++  C  LG   
Sbjct: 185 DEISEKDLVSWNSMISGYSRMGYAGDAVGLFGEMRDAGFEPDEMTLVSILGACGDLGDLG 244

Query: 168 LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
           L   I G  ++  + L+  V ++++ MY    DL +A ++F  M  KDV++W  M+  + 
Sbjct: 245 LGSWIEGFVVENEMDLNSFVGSALIGMYGKCGDLSSARRVFDRMVKKDVVTWNAMITGYA 304

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
               + +A+ +F  MR+S +  D + L+ ++S  A +G L  GK L       GLQ+++ 
Sbjct: 305 QNGVSDEAIILFSGMRESGVNPDKITLVGVLSACASIGALDFGKWLDTYASERGLQNDIY 364

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE- 346
           +S ++I MY+KCG LD +  VF  + +K+ VSW A+IS    +G  +E+L+ F +M +E 
Sbjct: 365 VSTALIDMYAKCGSLDDALRVFEDMPQKNEVSWNAMISALAFHGRPQESLSLFKRMSKEG 424

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEA-GFPRYRSVQNCLISSYSKCGNVD 405
                + I+ + +L+A      ++   QL  +   + G        +C++   ++ G+V 
Sbjct: 425 GAVRPNDISFIGVLSACVHAGLVDEGRQLFDLMSSSFGLVPKIEHHSCMVDLLARAGHVH 484

Query: 406 LAYIVFEEM 414
            A+   E+M
Sbjct: 485 EAWDFIEKM 493



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 123/417 (29%), Positives = 211/417 (50%), Gaps = 20/417 (4%)

Query: 153 MLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME 212
           +L++++ C +  S    + IH   I    I  +   N +L  +  L D + A  +F ++ 
Sbjct: 34  LLSLLKQCTSTKS---LQQIHTQMI----INAIHKPNFLLHRFIDLKDFNNASLLFSQIP 86

Query: 213 CKDVISWTRMM-GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGK 271
             +  ++  M+ GL   ++     ++ + +M+   I  +      +    A L  L  G+
Sbjct: 87  YPNEYAFNIMIRGLTTTWQKFNLTIEFYYQMKDFGIRPNNFTYPFVFIACANLLVLNHGQ 146

Query: 272 QLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNG 331
             H+ V+  GL ++  + +S+I MYS+CG+L  +R VF++I+EK LVSW ++ISGY + G
Sbjct: 147 CAHSGVLKSGLCADGHVRHSLITMYSRCGELGCARRVFDEISEKDLVSWNSMISGYSRMG 206

Query: 332 CAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ 391
            A +A+  F +MR    +  D +TLVSIL A G+L  L +   + G   E        V 
Sbjct: 207 YAGDAVGLFGEMRDAGFEP-DEMTLVSILGACGDLGDLGLGSWIEGFVVENEMDLNSFVG 265

Query: 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE 451
           + LI  Y KCG++  A  VF+ M   +DVV+WN +I GY  NG  + A+ L+  M E+G 
Sbjct: 266 SALIGMYGKCGDLSSARRVFDRM-VKKDVVTWNAMITGYAQNGVSDEAIILFSGMRESGV 324

Query: 452 VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDAS 511
            PD  T + +L+AC   G  + G  + +    E  ++        ++D+ A+ G L DA 
Sbjct: 325 NPDKITLVGVLSACASIGALDFGKWL-DTYASERGLQNDIYVSTALIDMYAKCGSLDDAL 383

Query: 512 GLAGKLLEGMGPN---IWRALLSGCVLHVGRFQDAEAL-RSGSQKKGIIKIPGISFL 564
               ++ E M       W A++S    H GR Q++ +L +  S++ G ++   ISF+
Sbjct: 384 ----RVFEDMPQKNEVSWNAMISALAFH-GRPQESLSLFKRMSKEGGAVRPNDISFI 435



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 84/339 (24%), Positives = 169/339 (49%), Gaps = 25/339 (7%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C D +    L++ Y + G++  A  +FDEI EK++VSW+ +I GYS  G+   ++  F  
Sbjct: 158 CADGHVRHSLITMYSRCGELGCARRVFDEISEKDLVSWNSMISGYSRMGYAGDAVGLFGE 217

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK----------------FGLESD 105
           M  +G  P+  T+V +L A   L +L L   I G +V+                +G   D
Sbjct: 218 MRDAGFEPDEMTLVSILGACGDLGDLGLGSWIEGFVVENEMDLNSFVGSALIGMYGKCGD 277

Query: 106 L------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
           L      F+ +    +V+ NA++ G+  N +  +A++LF+  R SG+ P+ +T++ V+  
Sbjct: 278 LSSARRVFDRMVKKDVVTWNAMITGYAQNGVSDEAIILFSGMRESGVNPDKITLVGVLSA 337

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C ++G+    + +     + GL  D+ V+ +++DMY+    LD A+++F +M  K+ +SW
Sbjct: 338 CASIGALDFGKWLDTYASERGLQNDIYVSTALIDMYAKCGSLDDALRVFEDMPQKNEVSW 397

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKS--RIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
             M+          ++L +F+ M K    +  + ++ + ++S     G +  G+QL   +
Sbjct: 398 NAMISALAFHGRPQESLSLFKRMSKEGGAVRPNDISFIGVLSACVHAGLVDEGRQLFDLM 457

Query: 278 VLG-GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK 315
               GL  ++   + ++ + ++ G +  +     ++ EK
Sbjct: 458 SSSFGLVPKIEHHSCMVDLLARAGHVHEAWDFIEKMPEK 496


>gi|6714305|gb|AAF26001.1|AC013354_20 F15H18.4 [Arabidopsis thaliana]
          Length = 1702

 Score =  236 bits (601), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 162/565 (28%), Positives = 279/565 (49%), Gaps = 37/565 (6%)

Query: 4    DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
            D +  + L+S Y   G + +A  LFD +PE+N+VSW+ +I  +S NGF E+S      MM
Sbjct: 576  DVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMM 635

Query: 64   LS----GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL------------- 106
                    +P+  T+V VL   A  + + L + +HG  VK  L+ +L             
Sbjct: 636  EENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKC 695

Query: 107  ---------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFR-----GSGLVPNAVT 152
                     F+   N  +VS N +V GF            F+  R     G  +  + VT
Sbjct: 696  GCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGT---FDVLRQMLAGGEDVKADEVT 752

Query: 153  MLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME 212
            +L  +  C         + +H  ++K   + +  V N+ +  Y+    L  A ++F  + 
Sbjct: 753  ILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIR 812

Query: 213  CKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQ 272
             K V SW  ++G          +L    +M+ S ++ D+  + +L+S  + L  L+ GK+
Sbjct: 813  SKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKE 872

Query: 273  LHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC 332
            +H  ++   L+ +L +  S++++Y  CG+L + +++F+ + +KSLVSW  +I+GY+QNG 
Sbjct: 873  VHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGF 932

Query: 333  AREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN 392
               AL  F +M       +  I+++ +  A   L +L +  + H  A +        +  
Sbjct: 933  PDRALGVFRQMVLYGI-QLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIAC 991

Query: 393  CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV 452
             LI  Y+K G++  +  VF  +   +   SWN +I GYG++G  + A+ L+ +M  TG  
Sbjct: 992  SLIDMYAKNGSITQSSKVFNGLK-EKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHN 1050

Query: 453  PDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA-S 511
            PD  T+L +L AC H+GL ++GL   +QM     +KP+ +HY CV+D+L RAG L  A  
Sbjct: 1051 PDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALR 1110

Query: 512  GLAGKLLEGMGPNIWRALLSGCVLH 536
             +A ++ E     IW++LLS C +H
Sbjct: 1111 VVAEEMSEEADVGIWKSLLSSCRIH 1135



 Score =  188 bits (477), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 155/583 (26%), Positives = 277/583 (47%), Gaps = 50/583 (8%)

Query: 9    SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM-LSGL 67
            +++++ Y   G   ++  +FD +  KN+  W+ VI  YS N  +++ ++ F  M+  + L
Sbjct: 479  TRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDL 538

Query: 68   LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG------------------ 109
            LP+ FT   V+ A AG+ ++ +  ++HGL+VK GL  D+F G                  
Sbjct: 539  LPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQ 598

Query: 110  ----LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFF---RGSG-LVPNAVTMLTVIRGCV 161
                +    LVS N+++  F +N   +++ LL        G G  +P+  T++TV+  C 
Sbjct: 599  LFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCA 658

Query: 162  ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
                  L + +HG  +KL L  ++ +NN+++DMYS    +  A  IF+    K+V+SW  
Sbjct: 659  REREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNT 718

Query: 222  MMGLFVDFEYAGDALKIFREMRK-----SRIICDTVALLNLISVNAILGDLKRGKQLHAQ 276
            M+G    F   GD    F  +R+       +  D V +LN + V      L   K+LH  
Sbjct: 719  MVG---GFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCY 775

Query: 277  VVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
             +         ++N+ +A Y+KCG L  ++ VF+ I  K++ SW A+I G+ Q+   R +
Sbjct: 776  SLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLS 835

Query: 337  LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
            L+  ++M+       DS T+ S+L+A  +L +L +  ++HG        R   V   ++S
Sbjct: 836  LDAHLQMKISGL-LPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLS 894

Query: 397  SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
             Y  CG +     +F+ M   + +VSWNT+I GY  NG  + AL ++ +M   G      
Sbjct: 895  LYIHCGELCTVQALFDAMED-KSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGI 953

Query: 457  TYLSILNACGHAGLTNDG----LVIFNQMIEENKVKPSQEHYGC-VVDLLARAGCLSDAS 511
            + + +  AC        G          ++E++          C ++D+ A+ G ++ +S
Sbjct: 954  SMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAF------IACSLIDMYAKNGSITQSS 1007

Query: 512  GLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKG 554
             +   L E    + W A++ G  +H G  ++A  L    Q+ G
Sbjct: 1008 KVFNGLKEKSTAS-WNAMIMGYGIH-GLAKEAIKLFEEMQRTG 1048



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 121/481 (25%), Positives = 218/481 (45%), Gaps = 28/481 (5%)

Query: 11   LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSG--LL 68
            L+  Y K G I  A+ +F     KNVVSW+ ++ G+S  G    +      M+  G  + 
Sbjct: 688  LMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVK 747

Query: 69   PNSFTMVGVLVAAAGLQNLELARSIHGLMVK----------------------FGLESDL 106
             +  T++  +        L   + +H   +K                            +
Sbjct: 748  ADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRV 807

Query: 107  FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
            F G+++  + S NA++ G   +   + ++      + SGL+P++ T+ +++  C  L S 
Sbjct: 808  FHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSL 867

Query: 167  ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
             L + +HG  I+  L  D+ V  SVL +Y    +L     +F  ME K ++SW  ++  +
Sbjct: 868  RLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGY 927

Query: 227  VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
            +   +   AL +FR+M    I    ++++ +    ++L  L+ G++ HA  +   L+ + 
Sbjct: 928  LQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDA 987

Query: 287  RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
             ++ S+I MY+K G +  S  VFN + EKS  SW A+I GY  +G A+EA+  F +M Q 
Sbjct: 988  FIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEM-QR 1046

Query: 347  KTDSVDSITLVSILTASGELAALEICLQ-LHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
               + D +T + +LTA      +   L+ L  +    G         C+I    + G +D
Sbjct: 1047 TGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLD 1106

Query: 406  LA-YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTE-TGEVPDSSTYLSILN 463
             A  +V EEM    DV  W +++    ++ + E    +  K+ E   E P++   LS L 
Sbjct: 1107 KALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLY 1166

Query: 464  A 464
            A
Sbjct: 1167 A 1167



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 148/308 (48%), Gaps = 25/308 (8%)

Query: 212 ECKDVISWTRMMGLFV-DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG 270
           E  D+    R +  FV D E + DA  + RE           AL  L+  +    D++ G
Sbjct: 410 ETGDLDKSFRTVQEFVGDDESSSDAFLLVRE-----------ALGLLLQASGKRKDIEMG 458

Query: 271 KQLHAQVVLGG--LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYV 328
           +++H Q+V G   L+++  L   II MY+ CG  D SR VF+ +  K+L  W A+IS Y 
Sbjct: 459 RKIH-QLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYS 517

Query: 329 QNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYR 388
           +N    E L  FI+M        D  T   ++ A   ++ + I L +HG+  + G     
Sbjct: 518 RNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDV 577

Query: 389 SVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETA-LALYHKMT 447
            V N L+S Y   G V  A  +F+ M   R++VSWN++I  +  NG  E + L L   M 
Sbjct: 578 FVGNALVSFYGTHGFVTDALQLFDIMP-ERNLVSWNSMIRVFSDNGFSEESFLLLGEMME 636

Query: 448 ETGE---VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY--GCVVDLLA 502
           E G+   +PD +T +++L  C        G  +    +   K++  +E      ++D+ +
Sbjct: 637 ENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAV---KLRLDKELVLNNALMDMYS 693

Query: 503 RAGCLSDA 510
           + GC+++A
Sbjct: 694 KCGCITNA 701


>gi|242076082|ref|XP_002447977.1| hypothetical protein SORBIDRAFT_06g019190 [Sorghum bicolor]
 gi|241939160|gb|EES12305.1| hypothetical protein SORBIDRAFT_06g019190 [Sorghum bicolor]
          Length = 772

 Score =  235 bits (600), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 165/558 (29%), Positives = 278/558 (49%), Gaps = 33/558 (5%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM-LSG- 66
           S L+  Y + G +++A  LF+E+ E++VV+W+ V+ G   NG     ++    M+ L+G 
Sbjct: 153 SSLVYMYARCGVVRDAVKLFEEMRERDVVAWTAVVSGCVRNGECGDGLRYLVEMVRLAGD 212

Query: 67  --LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL---------------------- 102
               PNS TM   L A   L  L   R +HG  VK G+                      
Sbjct: 213 GKARPNSRTMESGLEACGVLDELNSGRCLHGYAVKVGVGDSPMVISALFSMYSKCHSTED 272

Query: 103 ESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA 162
              LF  L    +VS  +++  +    L ++A+ LF     SGL P+ V +  ++ G   
Sbjct: 273 ACSLFPELPEKDVVSWTSLIGIYCWRGLIREAMELFQEMMESGLQPDDVLVSCLLSGLGN 332

Query: 163 LGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
            G+    +  H + +K     +V V N+++ MY     +D A ++FR +  +D  SW  M
Sbjct: 333 SGNVHGGKAFHAVIMKRNFGDNVLVGNALISMYGKFELVDNAGRVFRLLHQRDADSWNLM 392

Query: 223 MGLFVDFEYAGDALKIFREMR---KSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           +  +         L+++REM+       +CD  +L++ IS  + L +L+ G+  H   + 
Sbjct: 393 IVGYCKAGCDVKCLELYREMQFRDTYEFLCDANSLVSAISSCSRLVELRLGRSAHCYSIK 452

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK-SLVSWTAIISGYVQNGCAREALN 338
             L  +  ++N +I MY +CG  D +  +F     K  +V+W  +IS Y   G +  A++
Sbjct: 453 HWLDEDSSVANVLIGMYGRCGKFDHACKIFGLAKLKGDVVTWNTLISSYAHLGHSNTAVS 512

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
            + +M  E   + +S TL+++++A   L ALE   ++H    E G+    S+   LI  Y
Sbjct: 513 LYDQMLTEGL-TPNSTTLITVISACANLVALERGEKIHSYVKEMGWDYDVSINTALIDMY 571

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
           +KCG +  A  +F+ M    DVV+WN +I GYG++G  + AL L+ KM      P+  T+
Sbjct: 572 AKCGQLGTARRIFDSM-LQHDVVAWNVMISGYGMHGEAKQALELFGKMEGGSIKPNGVTF 630

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
           L+IL+AC H+GL  +G  +F +M  +  ++P+ +HY C+VDLL ++G L +A  +   + 
Sbjct: 631 LAILSACCHSGLLEEGRQLFTRM-GKYSLEPNLKHYACMVDLLGKSGHLQEAEDMVLAMP 689

Query: 519 EGMGPNIWRALLSGCVLH 536
                 IW  LLS C LH
Sbjct: 690 VEPDGGIWGTLLSACKLH 707



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 155/592 (26%), Positives = 269/592 (45%), Gaps = 36/592 (6%)

Query: 5   PYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML 64
           P   +KL+S Y  +G+   A   F   P  +   W+ +I  +        ++ A   M+ 
Sbjct: 44  PDIVAKLVSAYSSAGRPGLAALAFSACPRPDAFLWNSLIRTHHCASDFVAALNAHRRMLA 103

Query: 65  SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES-------------------- 104
           S   P+ FT+     AAA L  L +  S+H   V++GL +                    
Sbjct: 104 SSARPSPFTVPLAASAAAELGALGVGASVHAYCVRYGLLAVDGGSVAVPSSLVYMYARCG 163

Query: 105 ------DLFEGLKNPYLVSCNAIVAGFINNKLFQQAV-LLFNFFRGSG---LVPNAVTML 154
                  LFE ++   +V+  A+V+G + N      +  L    R +G     PN+ TM 
Sbjct: 164 VVRDAVKLFEEMRERDVVAWTAVVSGCVRNGECGDGLRYLVEMVRLAGDGKARPNSRTME 223

Query: 155 TVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
           + +  C  L        +HG  +K+G+     V +++  MYS     + A  +F E+  K
Sbjct: 224 SGLEACGVLDELNSGRCLHGYAVKVGVGDSPMVISALFSMYSKCHSTEDACSLFPELPEK 283

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
           DV+SWT ++G++       +A+++F+EM +S +  D V +  L+S     G++  GK  H
Sbjct: 284 DVVSWTSLIGIYCWRGLIREAMELFQEMMESGLQPDDVLVSCLLSGLGNSGNVHGGKAFH 343

Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
           A ++       + + N++I+MY K   +D++  VF  + ++   SW  +I GY + GC  
Sbjct: 344 AVIMKRNFGDNVLVGNALISMYGKFELVDNAGRVFRLLHQRDADSWNLMIVGYCKAGCDV 403

Query: 335 EALNQFIKMRQEKTDS--VDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN 392
           + L  + +M+   T     D+ +LVS +++   L  L +    H  + +       SV N
Sbjct: 404 KCLELYREMQFRDTYEFLCDANSLVSAISSCSRLVELRLGRSAHCYSIKHWLDEDSSVAN 463

Query: 393 CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV 452
            LI  Y +CG  D A  +F       DVV+WNT+I  Y   GH  TA++LY +M   G  
Sbjct: 464 VLIGMYGRCGKFDHACKIFGLAKLKGDVVTWNTLISSYAHLGHSNTAVSLYDQMLTEGLT 523

Query: 453 PDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASG 512
           P+S+T +++++AC +      G  I +  ++E            ++D+ A+ G L  A  
Sbjct: 524 PNSTTLITVISACANLVALERGEKI-HSYVKEMGWDYDVSINTALIDMYAKCGQLGTARR 582

Query: 513 LAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFL 564
           +   +L+      W  ++SG  +H    Q  E    G  + G IK  G++FL
Sbjct: 583 IFDSMLQ-HDVVAWNVMISGYGMHGEAKQALELF--GKMEGGSIKPNGVTFL 631



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 125/494 (25%), Positives = 227/494 (45%), Gaps = 36/494 (7%)

Query: 5   PYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML 64
           P   S L S Y K    ++A +LF E+PEK+VVSW+ +I  Y   G   ++M+ F  MM 
Sbjct: 254 PMVISALFSMYSKCHSTEDACSLFPELPEKDVVSWTSLIGIYCWRGLIREAMELFQEMME 313

Query: 65  SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL------------FEGLKN 112
           SGL P+   +  +L       N+   ++ H +++K     ++            FE + N
Sbjct: 314 SGLQPDDVLVSCLLSGLGNSGNVHGGKAFHAVIMKRNFGDNVLVGNALISMYGKFELVDN 373

Query: 113 PYLV----------SCNAIVAGFINNKLFQQAVLLF---NFFRGSGLVPNAVTMLTVIRG 159
              V          S N ++ G+       + + L+    F      + +A ++++ I  
Sbjct: 374 AGRVFRLLHQRDADSWNLMIVGYCKAGCDVKCLELYREMQFRDTYEFLCDANSLVSAISS 433

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK-DVIS 218
           C  L    L    H  +IK  L  D SV N ++ MY      D A +IF   + K DV++
Sbjct: 434 CSRLVELRLGRSAHCYSIKHWLDEDSSVANVLIGMYGRCGKFDHACKIFGLAKLKGDVVT 493

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           W  ++  +    ++  A+ ++ +M    +  ++  L+ +IS  A L  L+RG+++H+ V 
Sbjct: 494 WNTLISSYAHLGHSNTAVSLYDQMLTEGLTPNSTTLITVISACANLVALERGEKIHSYVK 553

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
             G   ++ ++ ++I MY+KCG L ++R +F+ + +  +V+W  +ISGY  +G A++AL 
Sbjct: 554 EMGWDYDVSINTALIDMYAKCGQLGTARRIFDSMLQHDVVAWNVMISGYGMHGEAKQALE 613

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLH----GIAFEAGFPRYRSVQNCL 394
            F KM +  +   + +T ++IL+A      LE   QL       + E     Y     C+
Sbjct: 614 LFGKM-EGGSIKPNGVTFLAILSACCHSGLLEEGRQLFTRMGKYSLEPNLKHY----ACM 668

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           +    K G++  A  +   M    D   W T++    ++   E  L +  K   + +  +
Sbjct: 669 VDLLGKSGHLQEAEDMVLAMPVEPDGGIWGTLLSACKLHDDFEMGLRIAKKAFAS-DAEN 727

Query: 455 SSTYLSILNACGHA 468
              Y+ I N+ G A
Sbjct: 728 EGYYILISNSYGSA 741



 Score = 43.9 bits (102), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 20/208 (9%)

Query: 272 QLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNG 331
           ++HA  V  GL     +   +++ YS  G    +   F+         W ++I     + 
Sbjct: 30  RVHALAVTSGLSQRPDIVAKLVSAYSSAGRPGLAALAFSACPRPDAFLWNSLIR---THH 86

Query: 332 CARE---ALNQFIKM-----RQEKTDSVDSITLVSILTASGELAALE-ICLQLHGIAFEA 382
           CA +   ALN   +M     R        + +  + L A G  A++   C++   +A + 
Sbjct: 87  CASDFVAALNAHRRMLASSARPSPFTVPLAASAAAELGALGVGASVHAYCVRYGLLAVDG 146

Query: 383 GFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALAL 442
           G     +V + L+  Y++CG V  A  +FEEM   RDVV+W  ++ G   NG     L  
Sbjct: 147 GSV---AVPSSLVYMYARCGVVRDAVKLFEEM-RERDVVAWTAVVSGCVRNGECGDGLRY 202

Query: 443 YHKMTETG----EVPDSSTYLSILNACG 466
             +M          P+S T  S L ACG
Sbjct: 203 LVEMVRLAGDGKARPNSRTMESGLEACG 230


>gi|242032375|ref|XP_002463582.1| hypothetical protein SORBIDRAFT_01g002460 [Sorghum bicolor]
 gi|241917436|gb|EER90580.1| hypothetical protein SORBIDRAFT_01g002460 [Sorghum bicolor]
          Length = 610

 Score =  235 bits (600), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 149/493 (30%), Positives = 251/493 (50%), Gaps = 28/493 (5%)

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------L 106
           P   T   +L   A   +L   R++H  +   GL S+                      +
Sbjct: 57  PVLRTFTALLKLCAARADLATGRAVHAQLTARGLASESLAATALANMYFKCRRPVDARRV 116

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGS--GLVPNAVTMLTVIRGCVALG 164
           F+ +     V+ NA+VAG+  N L   A+      +G   G  P+++T+++V+  C    
Sbjct: 117 FDRMPARDRVAWNALVAGYARNGLPALAMEAVVRMQGEEGGEQPDSITLVSVLPACADAR 176

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
               C  +H   ++ GL   V+V+ +VLD Y     ++AA  +F  M  ++ +SW  M+ 
Sbjct: 177 VLGACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDWMPVRNSVSWNAMID 236

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            + +   A +AL +F  M +  +     A+L  +     LG L   +++H  +V  GL+S
Sbjct: 237 GYAENGNASEALALFWRMVQEGVDVTDAAVLAALQACRELGCLDEARRVHELLVRVGLKS 296

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQI-TEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
            + + N++I  YSKC   D +   FN++  +K+ +SW A+I G+ QNGC+ +A   F +M
Sbjct: 297 NVSVMNALITTYSKCKRADLAAHAFNELGIKKTRISWNAMILGFTQNGCSEDAERLFARM 356

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
           + E     DS TLVS++ A  +++       +HG +      +   V   LI  YSKCG 
Sbjct: 357 QLENVKP-DSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDIYVLTALIDMYSKCGR 415

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           V +A  +F+     R V++WN +I+GYG +G G+ A+ L+ +M  TG +P+ +T+LS+L 
Sbjct: 416 VTIARKLFDS-ARDRHVITWNAMIHGYGSHGFGQVAVELFEEMKGTGSLPNETTFLSVLA 474

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
           AC HAGL ++G   F  M ++  ++P  EHYG +VDLL RAG + +A      +    G 
Sbjct: 475 ACSHAGLVDEGRKYFASM-KDYGLEPGMEHYGTLVDLLGRAGKVDEAWSFIQNMPIEPGI 533

Query: 524 NIWRALLSGCVLH 536
           +++ A+L  C LH
Sbjct: 534 SVYGAMLGACKLH 546



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 118/487 (24%), Positives = 220/487 (45%), Gaps = 38/487 (7%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM--LS 65
           ++ L + YFK  +  +A  +FD +P ++ V+W+ ++ GY+ NG    +M+A   M     
Sbjct: 97  ATALANMYFKCRRPVDARRVFDRMPARDRVAWNALVAGYARNGLPALAMEAVVRMQGEEG 156

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES--------------------- 104
           G  P+S T+V VL A A  + L   R +H   ++ GL+                      
Sbjct: 157 GEQPDSITLVSVLPACADARVLGACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAA 216

Query: 105 -DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
             +F+ +     VS NA++ G+  N    +A+ LF      G+      +L  ++ C  L
Sbjct: 217 RAVFDWMPVRNSVSWNAMIDGYAENGNASEALALFWRMVQEGVDVTDAAVLAALQACREL 276

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV-ISWTRM 222
           G       +H L +++GL  +VSV N+++  YS     D A   F E+  K   ISW  M
Sbjct: 277 GCLDEARRVHELLVRVGLKSNVSVMNALITTYSKCKRADLAAHAFNELGIKKTRISWNAM 336

Query: 223 MGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL 282
           +  F     + DA ++F  M+   +  D+  L+++I   A + D  + + +H   +   L
Sbjct: 337 ILGFTQNGCSEDAERLFARMQLENVKPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQL 396

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
             ++ +  ++I MYSKCG +  +R +F+   ++ +++W A+I GY  +G  + A+  F +
Sbjct: 397 DQDIYVLTALIDMYSKCGRVTIARKLFDSARDRHVITWNAMIHGYGSHGFGQVAVELFEE 456

Query: 343 MRQEKTDSV-DSITLVSILTASGELAALE----ICLQLHGIAFEAGFPRYRSVQNCLISS 397
           M+   T S+ +  T +S+L A      ++        +     E G   Y +    L+  
Sbjct: 457 MK--GTGSLPNETTFLSVLAACSHAGLVDEGRKYFASMKDYGLEPGMEHYGT----LVDL 510

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
             + G VD A+   + M     +  +  ++    ++ + E A     K+ E G  P+  +
Sbjct: 511 LGRAGKVDEAWSFIQNMPIEPGISVYGAMLGACKLHKNVELAEESAQKIFELG--PEEGS 568

Query: 458 YLSILNA 464
               +NA
Sbjct: 569 LSQTMNA 575



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 56/103 (54%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + L+  Y K G++  A  LFD   +++V++W+ +IHGY  +GF + +++ F  M 
Sbjct: 399 DIYVLTALIDMYSKCGRVTIARKLFDSARDRHVITWNAMIHGYGSHGFGQVAVELFEEMK 458

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL 106
            +G LPN  T + VL A +    ++  R     M  +GLE  +
Sbjct: 459 GTGSLPNETTFLSVLAACSHAGLVDEGRKYFASMKDYGLEPGM 501


>gi|115467784|ref|NP_001057491.1| Os06g0314100 [Oryza sativa Japonica Group]
 gi|54291635|dbj|BAD62428.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|113595531|dbj|BAF19405.1| Os06g0314100 [Oryza sativa Japonica Group]
 gi|125597005|gb|EAZ36785.1| hypothetical protein OsJ_21122 [Oryza sativa Japonica Group]
          Length = 992

 Score =  235 bits (600), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 169/616 (27%), Positives = 291/616 (47%), Gaps = 64/616 (10%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           S L+S Y K G +  A  LF  + EK+ + W+ +I GY +N      M +   M + G+ 
Sbjct: 383 SALVSMYSKLGDLDSAVFLFSSVTEKSQLLWNSLISGYLVNNKWNMVMGSVRRMQIEGVD 442

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE----------------------SDL 106
           P++ T++ V+      ++L + +SIH   V+  LE                        L
Sbjct: 443 PDALTVISVISKCRHTEDLHVGKSIHAYAVRSRLELNESVMNALLAMYADCGQLSICCKL 502

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           F  ++   L+S N I++GF  N      +  F   R + +  + VT++ +I    A+   
Sbjct: 503 FHTMEVRTLISWNTIISGFAENGDSVACLRFFCQMRLADMQFDLVTLIALISSLSAIEDI 562

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
            + E +H L I+ G  LDVSV N+++ MY+    + A  ++F  +   + IS+  +M  +
Sbjct: 563 TVGESVHSLAIRSGCNLDVSVANALITMYTNCGIIQAGEKLFDSLSSVNTISYNALMTGY 622

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
                  + L +F  M K+    + + LLNL+    I     +GK +H+  +    + E 
Sbjct: 623 RKNNLFEEILPLFYHMIKNDQKPNIITLLNLL---PICHSQLQGKTVHSYAIRNFSKLET 679

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF--IKMR 344
            L  S I MYS+  +L+   ++F  + E++ + W AI+S  VQ   A  A + F  I+  
Sbjct: 680 SLFTSAICMYSRFNNLEYCHNLFCLVGERNNIVWNAILSACVQCKQAGVAFDYFRQIQFL 739

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
             KTD+V   T++++++A  +L   ++   +  IA + GF     V N LI  +S+CG++
Sbjct: 740 NVKTDAV---TMLALISACSQLGKADLAECVTAIALQKGFDGTIIVLNALIDMHSRCGSI 796

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
             A  +F+ +   +D VSW+T+I  Y ++G G +AL L+  M  +G  PD  T++S+L+A
Sbjct: 797 SFARKIFD-ISMEKDSVSWSTMINAYSMHGDGGSALDLFLMMVSSGIKPDDITFVSVLSA 855

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C  +G    G  +F  M+ ++ + P  EHY C+VDLL R G L +A  +   +      +
Sbjct: 856 CSRSGFLEQGRTLFRSMLADHGITPRMEHYACMVDLLGRTGHLDEAYDIVTTMPFRPSKS 915

Query: 525 IWRALLSGCVLH---------------------------------VGRFQDAEALRSGSQ 551
           +  +LL  C  H                                  G++ D E LRS  +
Sbjct: 916 LLESLLGACRFHGNSKLGESVGKILTESDHGNPRSYVMLSNIYASAGKWSDYERLRSDME 975

Query: 552 KKGIIKIPGISFLNST 567
            KG+IK  G+S +  T
Sbjct: 976 AKGLIKDVGVSLIGGT 991



 Score =  207 bits (526), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 150/549 (27%), Positives = 271/549 (49%), Gaps = 31/549 (5%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + LL  Y KSG++  +  +FD +  ++++SW+ +I GYS+NG   ++ +A   M   G  
Sbjct: 181 TALLDMYAKSGQVDLSRRVFDGMKSRDLISWNAMISGYSLNGCLLEAAEALKQMQQDGFR 240

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------L 106
           PN+ ++VG++   +GL   +    +H   +K G+  D                      L
Sbjct: 241 PNASSLVGIVSMVSGLGVRDAGDPLHAFALKSGVLGDESLTPAFISMYAAFGHLSSSLSL 300

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           F       LVSCN++++  + +  +++A  +F   R  GLVPN VT+++++  C      
Sbjct: 301 FHQSLVDNLVSCNSMISVCMQHGAWEKAFGVFRLMRCKGLVPNLVTVVSILPCCSNFFGI 360

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
              E +HG+ IK GL   VSV ++++ MYS L DLD+A+ +F  +  K  + W  ++  +
Sbjct: 361 NHGESVHGMVIKFGLAEQVSVVSALVSMYSKLGDLDSAVFLFSSVTEKSQLLWNSLISGY 420

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
           +        +   R M+   +  D + ++++IS      DL  GK +HA  V   L+   
Sbjct: 421 LVNNKWNMVMGSVRRMQIEGVDPDALTVISVISKCRHTEDLHVGKSIHAYAVRSRLELNE 480

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            + N+++AMY+ CG L     +F+ +  ++L+SW  IISG+ +NG +   L  F +MR  
Sbjct: 481 SVMNALLAMYADCGQLSICCKLFHTMEVRTLISWNTIISGFAENGDSVACLRFFCQMRLA 540

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
                D +TL++++++   +  + +   +H +A  +G     SV N LI+ Y+ CG +  
Sbjct: 541 DMQ-FDLVTLIALISSLSAIEDITVGESVHSLAIRSGCNLDVSVANALITMYTNCGIIQA 599

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
              +F+ +  + + +S+N ++ GY  N   E  L L++ M +  + P+  T L++L  C 
Sbjct: 600 GEKLFDSLSSV-NTISYNALMTGYRKNNLFEEILPLFYHMIKNDQKPNIITLLNLLPIC- 657

Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI- 525
           H+ L   G  + +  I  N  K     +   + + +R   L     L    L G   NI 
Sbjct: 658 HSQL--QGKTVHSYAI-RNFSKLETSLFTSAICMYSRFNNLEYCHNLF--CLVGERNNIV 712

Query: 526 WRALLSGCV 534
           W A+LS CV
Sbjct: 713 WNAILSACV 721



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 107/433 (24%), Positives = 214/433 (49%), Gaps = 26/433 (6%)

Query: 36  VVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHG 95
           V   +I +  +S +GFH + +  +  +   G   ++FT   V+ A A +  L L + +H 
Sbjct: 109 VYDLNIAVRCFSDHGFHRELLGLYREVCAFG--SDNFTFPPVIRACAAVSCLRLGKEVHC 166

Query: 96  LMVKFG----------------------LESDLFEGLKNPYLVSCNAIVAGFINNKLFQQ 133
            +V+ G                      L   +F+G+K+  L+S NA+++G+  N    +
Sbjct: 167 RVVRTGHGGNVGVQTALLDMYAKSGQVDLSRRVFDGMKSRDLISWNAMISGYSLNGCLLE 226

Query: 134 AVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLD 193
           A       +  G  PNA +++ ++     LG R   + +H   +K G++ D S+  + + 
Sbjct: 227 AAEALKQMQQDGFRPNASSLVGIVSMVSGLGVRDAGDPLHAFALKSGVLGDESLTPAFIS 286

Query: 194 MYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVA 253
           MY+    L +++ +F +    +++S   M+ + +       A  +FR MR   ++ + V 
Sbjct: 287 MYAAFGHLSSSLSLFHQSLVDNLVSCNSMISVCMQHGAWEKAFGVFRLMRCKGLVPNLVT 346

Query: 254 LLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT 313
           +++++   +    +  G+ +H  V+  GL  ++ + +++++MYSK GDLDS+  +F+ +T
Sbjct: 347 VVSILPCCSNFFGINHGESVHGMVIKFGLAEQVSVVSALVSMYSKLGDLDSAVFLFSSVT 406

Query: 314 EKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICL 373
           EKS + W ++ISGY+ N      +    +M+ E  D  D++T++S+++       L +  
Sbjct: 407 EKSQLLWNSLISGYLVNNKWNMVMGSVRRMQIEGVDP-DALTVISVISKCRHTEDLHVGK 465

Query: 374 QLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVN 433
            +H  A  +      SV N L++ Y+ CG + +   +F  M  +R ++SWNTII G+  N
Sbjct: 466 SIHAYAVRSRLELNESVMNALLAMYADCGQLSICCKLFHTME-VRTLISWNTIISGFAEN 524

Query: 434 GHGETALALYHKM 446
           G     L  + +M
Sbjct: 525 GDSVACLRFFCQM 537



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 117/495 (23%), Positives = 232/495 (46%), Gaps = 41/495 (8%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D   +   +S Y   G +  + +LF +    N+VS + +I     +G  EK+   F  M 
Sbjct: 277 DESLTPAFISMYAAFGHLSSSLSLFHQSLVDNLVSCNSMISVCMQHGAWEKAFGVFRLMR 336

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
             GL+PN  T+V +L   +    +    S+HG+++KFGL                     
Sbjct: 337 CKGLVPNLVTVVSILPCCSNFFGINHGESVHGMVIKFGLAEQVSVVSALVSMYSKLGDLD 396

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               LF  +     +  N++++G++ N  +   +      +  G+ P+A+T+++VI  C 
Sbjct: 397 SAVFLFSSVTEKSQLLWNSLISGYLVNNKWNMVMGSVRRMQIEGVDPDALTVISVISKCR 456

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
                 + + IH   ++  L L+ SV N++L MY+    L    ++F  ME + +ISW  
Sbjct: 457 HTEDLHVGKSIHAYAVRSRLELNESVMNALLAMYADCGQLSICCKLFHTMEVRTLISWNT 516

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++  F +   +   L+ F +MR + +  D V L+ LIS  + + D+  G+ +H+  +  G
Sbjct: 517 IISGFAENGDSVACLRFFCQMRLADMQFDLVTLIALISSLSAIEDITVGESVHSLAIRSG 576

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
              ++ ++N++I MY+ CG + +   +F+ ++  + +S+ A+++GY +N    E L  F 
Sbjct: 577 CNLDVSVANALITMYTNCGIIQAGEKLFDSLSSVNTISYNALMTGYRKNNLFEEILPLFY 636

Query: 342 KM-RQEKTDSVDSITLVSILTASGELAALEICL-QLHGIAFEAGFPR-YRSVQNCLISS- 397
            M + ++  ++  ITL+++         L IC  QL G    +   R +  ++  L +S 
Sbjct: 637 HMIKNDQKPNI--ITLLNL---------LPICHSQLQGKTVHSYAIRNFSKLETSLFTSA 685

Query: 398 ---YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
              YS+  N++  + +F  +G   ++V WN I+           A   + ++       D
Sbjct: 686 ICMYSRFNNLEYCHNLFCLVGERNNIV-WNAILSACVQCKQAGVAFDYFRQIQFLNVKTD 744

Query: 455 SSTYLSILNACGHAG 469
           + T L++++AC   G
Sbjct: 745 AVTMLALISACSQLG 759



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 82/330 (24%), Positives = 156/330 (47%), Gaps = 28/330 (8%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D   ++ L++ Y   G I+  E LFD +   N +S++ ++ GY  N   E+ +  F HM
Sbjct: 579 LDVSVANALITMYTNCGIIQAGEKLFDSLSSVNTISYNALMTGYRKNNLFEEILPLFYHM 638

Query: 63  MLSGLLPNSFTMVGVL-VAAAGLQNLELARSIHGLMVK--FGLESDLFEGLKNPY----- 114
           + +   PN  T++ +L +  + LQ     +++H   ++    LE+ LF      Y     
Sbjct: 639 IKNDQKPNIITLLNLLPICHSQLQ----GKTVHSYAIRNFSKLETSLFTSAICMYSRFNN 694

Query: 115 LVSCNAI--VAGFINNKLF----------QQAVLLFNFFRGSGLV---PNAVTMLTVIRG 159
           L  C+ +  + G  NN ++          +QA + F++FR    +    +AVTML +I  
Sbjct: 695 LEYCHNLFCLVGERNNIVWNAILSACVQCKQAGVAFDYFRQIQFLNVKTDAVTMLALISA 754

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C  LG   L E +  + ++ G    + V N+++DM+S    +  A +IF     KD +SW
Sbjct: 755 CSQLGKADLAECVTAIALQKGFDGTIIVLNALIDMHSRCGSISFARKIFDISMEKDSVSW 814

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           + M+  +      G AL +F  M  S I  D +  ++++S  +  G L++G+ L   ++ 
Sbjct: 815 STMINAYSMHGDGGSALDLFLMMVSSGIKPDDITFVSVLSACSRSGFLEQGRTLFRSMLA 874

Query: 280 G-GLQSELRLSNSIIAMYSKCGDLDSSRSV 308
             G+   +     ++ +  + G LD +  +
Sbjct: 875 DHGITPRMEHYACMVDLLGRTGHLDEAYDI 904


>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
          Length = 599

 Score =  235 bits (600), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 140/443 (31%), Positives = 237/443 (53%), Gaps = 19/443 (4%)

Query: 111 KNPYLVSCNAIVAGFINNKLFQQAVLLFN-FFRGSGLVPNAVTMLTVIRGCVALGSRALC 169
           +NP   S N  + GF++++  ++AV+L+    +  G  P+  T   + + C  L    + 
Sbjct: 39  RNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMG 98

Query: 170 ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDF 229
             I G  + LG   D+ V+N+V+ +     DLD A ++F +   +D++SW  M+  +V  
Sbjct: 99  SEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRR 158

Query: 230 EYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLS 289
            +A +AL  +REM+   I  D V ++ ++S  A L DL  G++ H  +   GL+  + L+
Sbjct: 159 GWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLA 218

Query: 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWT----------------AIISGYVQNGCA 333
           N+++ MY KCG+L+S+R +F+ +T K++VSWT                A+I GYV     
Sbjct: 219 NALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRG 278

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC 393
           +EAL  F +M Q    + D +T+VS L+A  +L AL++ + +H    +       ++   
Sbjct: 279 KEALALFNEM-QAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTA 337

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           LI  Y+KCG +  A  VF+E+   R+ ++W  II G  ++G+   A+A + +M +   +P
Sbjct: 338 LIDMYAKCGKITKAIQVFQELPG-RNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMP 396

Query: 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL 513
           D  T+L +L+AC H GL  +G   F+QM  +  + P  +HY C+VDLL RAG L +A  L
Sbjct: 397 DEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEEL 456

Query: 514 AGKLLEGMGPNIWRALLSGCVLH 536
              +       +W AL   C +H
Sbjct: 457 IKSMPIEADAVVWGALFFACRIH 479



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 117/503 (23%), Positives = 219/503 (43%), Gaps = 70/503 (13%)

Query: 26  NLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM-LSGLLPNSFTMVGVLVAAAGL 84
           N+       N  SW++ I G+  +    +++  +  ++   G  P+++T   +  A A L
Sbjct: 33  NILFNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARL 92

Query: 85  QNLELARSIHGLMVKFGLESDLF---------------EGLKNPY-------LVSCNAIV 122
             + +   I G ++  G +SD+F               +G +  +       LVS N+++
Sbjct: 93  SLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMI 152

Query: 123 AGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLI 182
            G++      +A+  +   +  G+ P+ VTM+ V+  C  L    L    H    + GL 
Sbjct: 153 NGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLK 212

Query: 183 LDVSVNNSVLDMYSCLMDLDAA----------------IQIFREMECKDVISWTRMMGLF 226
           L V + N+++DMY    +L++A                  +F EM  KDV+ W  M+G +
Sbjct: 213 LTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGY 272

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
           V      +AL +F EM+   I  D V +++ +S  + LG L  G  +H  +    L   +
Sbjct: 273 VHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNV 332

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            L  ++I MY+KCG +  +  VF ++  ++ ++WTAIISG   +G A  A+  F +M  +
Sbjct: 333 ALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEM-ID 391

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN------------CL 394
            +   D +T + +L+A             HG   E G   +  + +            C+
Sbjct: 392 NSVMPDEVTFLGLLSAC-----------CHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCM 440

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGH---GETALALYHKMTETGE 451
           +    + G ++ A  + + M    D V W  + +   ++G+   GE A +   +M    +
Sbjct: 441 VDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQM----D 496

Query: 452 VPDSSTYLSILNACGHAGLTNDG 474
             DS  Y+ + N  G A +  + 
Sbjct: 497 PHDSGIYVLLANMYGEAEMWKEA 519



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/360 (23%), Positives = 173/360 (48%), Gaps = 40/360 (11%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + S+ ++      G +  A  +FD+   +++VSW+ +I+GY   G+  +++  +  M 
Sbjct: 113 DIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMK 172

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE-------------------- 103
           + G+ P+  TM+GV+ + A L++L+L R  H  + + GL+                    
Sbjct: 173 VEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLE 232

Query: 104 --SDLFEGLKNPYLVSC----------------NAIVAGFINNKLFQQAVLLFNFFRGSG 145
               LF+ + N  +VS                 NA++ G+++    ++A+ LFN  +   
Sbjct: 233 SARKLFDSMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMN 292

Query: 146 LVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAI 205
           + P+ VTM++ +  C  LG+  +   IH    K  L L+V++  +++DMY+    +  AI
Sbjct: 293 INPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAI 352

Query: 206 QIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILG 265
           Q+F+E+  ++ ++WT ++        A  A+  F EM  + ++ D V  L L+S     G
Sbjct: 353 QVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGG 412

Query: 266 DLKRGKQLHAQVVLG-GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAI 323
            ++ G++  +Q+     L  +L+  + ++ +  + G L+ +  +   +  E   V W A+
Sbjct: 413 LVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGAL 472



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 129/296 (43%), Gaps = 20/296 (6%)

Query: 277 VVLGGLQSELRLSNSIIAM--YSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
           +VL GL  +   S+ +IA    S+  DLD   ++       +  SW   I G++ +   R
Sbjct: 1   MVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFNTRNPNTFSWNVAIRGFLDSENPR 60

Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
           EA+  + ++ Q      D+ T   +  A   L+ + +  ++ G     GF     V N +
Sbjct: 61  EAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAV 120

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           I     CG++D A  +F++   +RD+VSWN++I GY   G    AL  Y +M   G  PD
Sbjct: 121 IHLLVSCGDLDGARKMFDK-SCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPD 179

Query: 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL- 513
             T + ++++C      + G    +  IEEN +K +      ++D+  + G L  A  L 
Sbjct: 180 EVTMIGVVSSCAQLEDLDLGRES-HCYIEENGLKLTVPLANALMDMYMKCGNLESARKLF 238

Query: 514 -----------AGKLLEGMGPN---IWRALLSGCVLHVGRFQDAEALRSGSQKKGI 555
                         L + M       W A++ G V H  R ++A AL +  Q   I
Sbjct: 239 DSMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGYV-HANRGKEALALFNEMQAMNI 293



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 97/233 (41%), Gaps = 28/233 (12%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C +  ++ KL  +      +     LFDE+P+K+VV W+ +I GY      ++++  F+ 
Sbjct: 228 CGNLESARKLFDSMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNE 287

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------- 105
           M    + P+  TMV  L A + L  L++   IH  + K  L  +                
Sbjct: 288 MQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGK 347

Query: 106 ------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                 +F+ L     ++  AI++G   +     A+  F+    + ++P+ VT L ++  
Sbjct: 348 ITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSA 407

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME 212
           C   G   L E       ++    ++S     L  YSC++DL     +  E E
Sbjct: 408 CCHGG---LVEEGRKYFSQMSSKFNLSPK---LKHYSCMVDLLGRAGLLEEAE 454


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  235 bits (600), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 159/616 (25%), Positives = 284/616 (46%), Gaps = 66/616 (10%)

Query: 11  LLSNYFKSGKIKEAENLFDEI--PEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSG-- 66
           L++ Y K G  + A ++F  +   ++++VSWS +I  ++ N    +++  F HM+     
Sbjct: 80  LITLYSKCGDWENALSIFRNMGHHKRDLVSWSAIISCFANNSMESRALLTFLHMLQCSRN 139

Query: 67  -LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-------------------- 105
            + PN +    +L + +         +I   ++K G                        
Sbjct: 140 IIYPNEYCFTALLRSCSNPLFFTTGLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQ 199

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +F+ +++  LV+   ++  +    L   AV LF     S   P+  T+ +++  CV
Sbjct: 200 SARMVFDKMQHKNLVTWTLMITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACV 259

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            L   +L + +H   I+ GL  DV V  +++DMY+    ++ + +IF  M   +V+SWT 
Sbjct: 260 ELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWTA 319

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++  +V      +A+K+F  M    +  +     +++   A L D   GKQLH Q +  G
Sbjct: 320 LISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIGKQLHGQTIKLG 379

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           L +   + NS+I MY++ G ++ +R  FN + EK+L+S+        +   + E+ N  +
Sbjct: 380 LSTINCVGNSLINMYARSGTMECARKAFNILFEKNLISYNTAADANAKALDSDESFNHEV 439

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
              +         T   +L+ +  +  +    Q+H +  ++GF     + N LIS YSKC
Sbjct: 440 ---EHTGVGASPFTYACLLSGAACIGTIVKGEQIHALIVKSGFGTNLCINNALISMYSKC 496

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           GN + A  VF +MG+ R+V++W +II G+  +G    AL L+++M E G  P+  TY+++
Sbjct: 497 GNKEAALQVFNDMGY-RNVITWTSIISGFAKHGFATKALELFYEMLEIGVKPNEVTYIAV 555

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L+AC H GL ++    FN M   + + P  EHY C+VDLL R+G L +A      +    
Sbjct: 556 LSACSHVGLIDEAWKHFNSMHYNHSISPRMEHYACMVDLLGRSGLLLEAIEFINSMPFDA 615

Query: 522 GPNIWRALLSGCVLHV---------------------------------GRFQDAEALRS 548
              +WR  L  C +H                                  GR+ D  ALR 
Sbjct: 616 DALVWRTFLGSCRVHRNTKLGEHAAKKILEREPHDPATYILLSNLYASEGRWDDVAALRK 675

Query: 549 GSQKKGIIKIPGISFL 564
             ++K +IK  G S++
Sbjct: 676 SMKQKKLIKETGYSWI 691



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 108/379 (28%), Positives = 184/379 (48%), Gaps = 26/379 (6%)

Query: 156 VIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM--EC 213
           +++ C+  G+  L +L+H   I  GL LD  + NS++ +YS   D + A+ IFR M    
Sbjct: 45  LLKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGHHK 104

Query: 214 KDVISWTRMMGLFVDFEYAGDALKIFREMRK-SRII------CDTVALLNLISVNAILGD 266
           +D++SW+ ++  F +      AL  F  M + SR I      C T ALL   S N +   
Sbjct: 105 RDLVSWSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFT-ALLRSCS-NPLF-- 160

Query: 267 LKRGKQLHAQVVLGG-LQSELRLSNSIIAMYSKCG-DLDSSRSVFNQITEKSLVSWTAII 324
              G  + A ++  G   S + +  ++I M++K G D+ S+R VF+++  K+LV+WT +I
Sbjct: 161 FTTGLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMI 220

Query: 325 SGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGF 384
           + Y Q G   +A++ F ++   +  + D  TL S+L+A  EL    +  QLH     +G 
Sbjct: 221 TRYSQLGLLDDAVDLFCRLLVSEY-TPDKFTLTSLLSACVELEFFSLGKQLHSWVIRSGL 279

Query: 385 PRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH 444
                V   L+  Y+K   V+ +  +F  M    +V+SW  +I GY  +   + A+ L+ 
Sbjct: 280 ASDVFVGCTLVDMYAKSAAVENSRKIFNTM-LHHNVMSWTALISGYVQSRQEQEAIKLFC 338

Query: 445 KMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCV----VDL 500
            M      P+  T+ S+L AC  A L + G+    + +    +K       CV    +++
Sbjct: 339 NMLHGHVTPNCFTFSSVLKAC--ASLPDFGI---GKQLHGQTIKLGLSTINCVGNSLINM 393

Query: 501 LARAGCLSDASGLAGKLLE 519
            AR+G +  A      L E
Sbjct: 394 YARSGTMECARKAFNILFE 412



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 157/324 (48%), Gaps = 24/324 (7%)

Query: 239 FREMRKSRIICDTVALLNLISVNAIL------GDLKRGKQLHAQVVLGGLQSELRLSNSI 292
           F  +RK+    D      LI  + +L      G+L+ GK LH +++  GL  +  L NS+
Sbjct: 21  FESLRKAISRLDLTTTSPLIKSSLLLKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSL 80

Query: 293 IAMYSKCGDLDSSRSVFNQI--TEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDS 350
           I +YSKCGD +++ S+F  +   ++ LVSW+AIIS +  N     AL  F+ M Q   + 
Sbjct: 81  ITLYSKCGDWENALSIFRNMGHHKRDLVSWSAIISCFANNSMESRALLTFLHMLQCSRNI 140

Query: 351 V--DSITLVSILTASGELAALEICLQLHGIAFEAG-FPRYRSVQNCLISSYSKCG-NVDL 406
           +  +     ++L +          L +     + G F  +  V   LI  ++K G ++  
Sbjct: 141 IYPNEYCFTALLRSCSNPLFFTTGLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQS 200

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           A +VF++M   +++V+W  +I  Y   G  + A+ L+ ++  +   PD  T  S+L+AC 
Sbjct: 201 ARMVFDKMQH-KNLVTWTLMITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACV 259

Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGC-VVDLLARAGCLSDASGLAGKLLEGMGPNI 525
                + G  + + +I       S    GC +VD+ A++  + ++  +   +L     N+
Sbjct: 260 ELEFFSLGKQLHSWVIRSGLA--SDVFVGCTLVDMYAKSAAVENSRKIFNTMLHH---NV 314

Query: 526 --WRALLSGCVLHVGRFQDAEALR 547
             W AL+SG   +V   Q+ EA++
Sbjct: 315 MSWTALISG---YVQSRQEQEAIK 335


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  235 bits (600), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 153/495 (30%), Positives = 249/495 (50%), Gaps = 40/495 (8%)

Query: 106 LFEG--LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
           +F+G  LKN +L   N ++ G+ +N L  ++++L+      G   +  T   V++ C  L
Sbjct: 117 IFDGIVLKNSFL--WNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDL 174

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
               +   +H   +  GL  D+ V NS+L MY+   D+  A  +F  M  +D+ SW  M+
Sbjct: 175 LLVEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMI 234

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
             +     +G A  +F  M K+ +  D   LL L+S  A L  +K GK +H   V   + 
Sbjct: 235 SGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIG 294

Query: 284 SELRL-SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
           +  +  +NS+I MY  C  +  +R +F ++  K  VSW ++I GY +NG A E+L  F +
Sbjct: 295 NYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNGDAFESLRLFRR 354

Query: 343 MRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
           M  + +   D +T +++L A  ++AAL   + +H    + GF     V   L+  YSKCG
Sbjct: 355 MALDGSGP-DQVTFIAVLGACDQIAALRYGMSIHSYLVKKGFDANTIVGTALVDMYSKCG 413

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
           ++  +  VF+EM   + +VSW+ ++ GYG++G G  A+++   M     +PD+  + SIL
Sbjct: 414 SLACSRRVFDEMPD-KSLVSWSAMVAGYGLHGRGREAISILDGMKANSVIPDNGVFTSIL 472

Query: 463 NACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMG 522
           +AC HAGL  +G  IF +M +E  VKP+  HY C+VDLL RAG L +A  +   +     
Sbjct: 473 SACSHAGLVVEGKEIFYKMEKEYNVKPALSHYSCMVDLLGRAGHLDEAYVIIRTMEIKPT 532

Query: 523 PNIWRALLSGCVLHVG---------------------------------RFQDAEALRSG 549
            +IW ALL+   LH                                   R+ D E +R+ 
Sbjct: 533 SDIWAALLTASRLHKNIKLAEISAQKVFDMNPKVVSSYICLSNIYAAEKRWDDVERVRAM 592

Query: 550 SQKKGIIKIPGISFL 564
            ++KG+ K PG SF+
Sbjct: 593 VRRKGLKKSPGCSFI 607



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 122/440 (27%), Positives = 216/440 (49%), Gaps = 35/440 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           + Y ++KL + Y   G + +AE +FD I  KN   W+ +I GY+ NG   KS+  +  M+
Sbjct: 94  NTYLNTKLAAFYAGCGLMSQAEVIFDGIVLKNSFLWNFMIRGYASNGLPMKSLVLYREML 153

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------- 106
             G   ++FT   VL A   L  +E+ R +H  +V  GLESD+                 
Sbjct: 154 CFGQRADNFTYPFVLKACGDLLLVEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMG 213

Query: 107 -----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                F+ +    L S N +++G+  N     A L+F+    +GL  +  T+L ++  C 
Sbjct: 214 TARMVFDRMAERDLTSWNTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACA 273

Query: 162 ALGSRALCELIHGLTIKLGL-ILDVSVNNSVLDMY---SCLMDLDAAIQIFREMECKDVI 217
            L +    ++IHG  ++  +   +    NS+++MY   +C++D   A ++F  +  KD +
Sbjct: 274 DLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVD---ARRLFERVRWKDTV 330

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           SW  M+  +     A ++L++FR M       D V  + ++     +  L+ G  +H+ +
Sbjct: 331 SWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYL 390

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           V  G  +   +  +++ MYSKCG L  SR VF+++ +KSLVSW+A+++GY  +G  REA+
Sbjct: 391 VKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVSWSAMVAGYGLHGRGREAI 450

Query: 338 NQFIKMRQEKTDSV--DSITLVSILTASGELA-ALEICLQLHGIAFEAGFPRYRSVQNCL 394
           +    M   K +SV  D+    SIL+A       +E     + +  E       S  +C+
Sbjct: 451 SILDGM---KANSVIPDNGVFTSILSACSHAGLVVEGKEIFYKMEKEYNVKPALSHYSCM 507

Query: 395 ISSYSKCGNVDLAYIVFEEM 414
           +    + G++D AY++   M
Sbjct: 508 VDLLGRAGHLDEAYVIIRTM 527



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 134/283 (47%), Gaps = 10/283 (3%)

Query: 267 LKRGKQLHAQVV-LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIIS 325
            K+G+QLHA ++    L++   L+  + A Y+ CG +  +  +F+ I  K+   W  +I 
Sbjct: 75  FKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVLKNSFLWNFMIR 134

Query: 326 GYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFP 385
           GY  NG   ++L  + +M        D+ T   +L A G+L  +EI  ++H      G  
Sbjct: 135 GYASNGLPMKSLVLYREMLC-FGQRADNFTYPFVLKACGDLLLVEIGRRVHSEVVVCGLE 193

Query: 386 RYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHK 445
               V N L++ Y+K G++  A +VF+ M   RD+ SWNT+I GY  N    TA  ++  
Sbjct: 194 SDIYVGNSLLAMYAKFGDMGTARMVFDRMA-ERDLTSWNTMISGYAKNADSGTAFLVFDL 252

Query: 446 MTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAG 505
           M + G   D +T L +L+AC       +G VI    +  +    ++     ++++     
Sbjct: 253 MGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCN 312

Query: 506 CLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRS 548
           C+ DA  L  ++        W+  +S   + +G  ++ +A  S
Sbjct: 313 CMVDARRLFERVR-------WKDTVSWNSMILGYARNGDAFES 348



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 158/348 (45%), Gaps = 25/348 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + LL+ Y K G +  A  +FD + E+++ SW+ +I GY+ N     +   F  M 
Sbjct: 195 DIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNADSGTAFLVFDLMG 254

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMV--------KFGLES----------- 104
            +GL  +  T++G+L A A L+ ++  + IHG  V        KF   S           
Sbjct: 255 KAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCM 314

Query: 105 ----DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                LFE ++    VS N+++ G+  N    +++ LF      G  P+ VT + V+  C
Sbjct: 315 VDARRLFERVRWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGAC 374

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             + +      IH   +K G   +  V  +++DMYS    L  + ++F EM  K ++SW+
Sbjct: 375 DQIAALRYGMSIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVSWS 434

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+  +       +A+ I   M+ + +I D     +++S  +  G +  GK++  ++   
Sbjct: 435 AMVAGYGLHGRGREAISILDGMKANSVIPDNGVFTSILSACSHAGLVVEGKEIFYKMEKE 494

Query: 281 -GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVS-WTAIISG 326
             ++  L   + ++ +  + G LD +  +   +  K     W A+++ 
Sbjct: 495 YNVKPALSHYSCMVDLLGRAGHLDEAYVIIRTMEIKPTSDIWAALLTA 542


>gi|357167647|ref|XP_003581265.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At5g08490-like [Brachypodium
           distachyon]
          Length = 929

 Score =  235 bits (600), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 155/593 (26%), Positives = 289/593 (48%), Gaps = 67/593 (11%)

Query: 4   DPYNSSKLLSNYFK---SGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           D    + L+S Y K   SG + +A   F  I  K+VVSW+ +I G+S NG  ++++  F 
Sbjct: 224 DTLCGNALISLYAKCGGSGTMDDAHRAFSSIGCKDVVSWNSIIAGHSENGLFKEALALFG 283

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLEL-ARSIHGLMVKFGLESDL------------- 106
            M     LPN  T+  +L   + +++ +   + +HG + + GL  D+             
Sbjct: 284 QMTSDKCLPNYSTVANILPVCSFMEHGKYYGKEVHGFVFRVGLYVDISVCNALMTHYSKV 343

Query: 107 ---------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
                    F  +    +++ N I++G++ N    + + LF+    +G+ P++V++++++
Sbjct: 344 YEMRAAESIFRSMNTRDIITWNTIISGYLMNGYHSRVLDLFHRLLSTGMTPDSVSLISLL 403

Query: 158 RGCVALGSRALCELIHGLTIKLGLI-LDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
             C  +G       +HG   +  ++  + S+ NS++  YS     D A+  F ++  KD 
Sbjct: 404 TACAQVGDAKGGMGVHGYIFRHPVLHQETSLMNSLVSFYSQCNRFDDALHAFADILSKDS 463

Query: 217 ISWTRMMGLFVDF-EYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
           ISW  ++       ++  +  K+F EM       D+V +LN++ V+ + G  K  ++ H 
Sbjct: 464 ISWNAILSACAKRGKHIEEFFKLFNEMCHEVTRWDSVTILNVVRVSNLCGSTKMVREAHG 523

Query: 276 QVVLGGLQSELRLSNSIIAMYSKCG-------------------------------DLDS 304
             +  G   E  ++N+I+  Y+KCG                                ++ 
Sbjct: 524 YSLRVGYIGETSVANAILDAYAKCGYPQDADVLFRNLAVRNIVTYNTMISCYLKNSSVEE 583

Query: 305 SRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASG 364
           +  +FNQ+++K   +W  +I  Y QNG   +A + F +++       D+I++ +IL A  
Sbjct: 584 AEIIFNQMSKKDQTTWNLMIQVYAQNGMCDQAFSLFRQLQ-----CPDTISITNILLACI 638

Query: 365 ELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWN 424
            L+ +++  Q HG    A       ++  L+ +YSKCGN+  AY +F+ +   +D+V++ 
Sbjct: 639 HLSLVQLVRQCHGYMLRASLEDIH-LEGSLLDAYSKCGNITDAYNLFQ-VSPTKDLVTFT 696

Query: 425 TIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEE 484
            +I GY ++G  E A+ L+ +M   G  PD     ++L+AC HAGL + G+ IF  + E 
Sbjct: 697 AMIGGYAMHGMAEEAVELFSEMLTLGIGPDHVVLTALLSACSHAGLVDAGIKIFKSVREI 756

Query: 485 NKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM-GPNIWRALLSGCVLH 536
            +++P+ EHY C+VDLL+R G L DA   A  +   +   N W +L+  C +H
Sbjct: 757 YRIEPTAEHYTCMVDLLSRGGRLQDAYNFALDMPPHLVNANAWGSLIGACKVH 809



 Score =  206 bits (523), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 135/500 (27%), Positives = 248/500 (49%), Gaps = 41/500 (8%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL---LPNS 71
           Y + G + +A  +FDE+   + V W+I+I G S  G+ +     F  M+  G    +P +
Sbjct: 131 YGRCGTLADARLVFDEMSCPDTVCWNILITGSSRAGYFDDVFDLFRSMVACGADESMPTA 190

Query: 72  FTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL------------------------- 106
            T+  V+   A L+ L    SIHG +VK GLESD                          
Sbjct: 191 VTVAVVIPVCAKLRVLRAGMSIHGYVVKTGLESDTLCGNALISLYAKCGGSGTMDDAHRA 250

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL-GS 165
           F  +    +VS N+I+AG   N LF++A+ LF        +PN  T+  ++  C  +   
Sbjct: 251 FSSIGCKDVVSWNSIIAGHSENGLFKEALALFGQMTSDKCLPNYSTVANILPVCSFMEHG 310

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
           +   + +HG   ++GL +D+SV N+++  YS + ++ AA  IFR M  +D+I+W  ++  
Sbjct: 311 KYYGKEVHGFVFRVGLYVDISVCNALMTHYSKVYEMRAAESIFRSMNTRDIITWNTIISG 370

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG-LQS 284
           ++   Y    L +F  +  + +  D+V+L++L++  A +GD K G  +H  +     L  
Sbjct: 371 YLMNGYHSRVLDLFHRLLSTGMTPDSVSLISLLTACAQVGDAKGGMGVHGYIFRHPVLHQ 430

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           E  L NS+++ YS+C   D +   F  I  K  +SW AI+S   + G   + + +F K+ 
Sbjct: 431 ETSLMNSLVSFYSQCNRFDDALHAFADILSKDSISWNAILSACAKRG---KHIEEFFKLF 487

Query: 345 QEKTDSV---DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
            E    V   DS+T+++++  S    + ++  + HG +   G+    SV N ++ +Y+KC
Sbjct: 488 NEMCHEVTRWDSVTILNVVRVSNLCGSTKMVREAHGYSLRVGYIGETSVANAILDAYAKC 547

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G    A ++F  +  +R++V++NT+I  Y  N   E A  ++++M++     D +T+  +
Sbjct: 548 GYPQDADVLFRNLA-VRNIVTYNTMISCYLKNSSVEEAEIIFNQMSK----KDQTTWNLM 602

Query: 462 LNACGHAGLTNDGLVIFNQM 481
           +      G+ +    +F Q+
Sbjct: 603 IQVYAQNGMCDQAFSLFRQL 622



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 128/441 (29%), Positives = 203/441 (46%), Gaps = 21/441 (4%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL-G 164
           LF+ +       C+ ++     N     ++ L     G GL P+ + +   I+   AL  
Sbjct: 41  LFDAVPATDHRHCSELLRARTANGDHSGSISLLRGMLGRGLRPDRLALAAAIKSASALRD 100

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
             +L   +HG  ++ G    V+V  +V+DMY     L  A  +F EM C D + W  ++ 
Sbjct: 101 GESLGRCLHGFVVRTGHAAGVAVAKAVMDMYGRCGTLADARLVFDEMSCPDTVCWNILIT 160

Query: 225 LFVDFEYAGDALKIFREM-----RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
                 Y  D   +FR M      +S     TVA++  I V A L  L+ G  +H  VV 
Sbjct: 161 GSSRAGYFDDVFDLFRSMVACGADESMPTAVTVAVV--IPVCAKLRVLRAGMSIHGYVVK 218

Query: 280 GGLQSELRLSNSIIAMYSKCG---DLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
            GL+S+    N++I++Y+KCG    +D +   F+ I  K +VSW +II+G+ +NG  +EA
Sbjct: 219 TGLESDTLCGNALISLYAKCGGSGTMDDAHRAFSSIGCKDVVSWNSIIAGHSENGLFKEA 278

Query: 337 LNQFIKMRQEKT----DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN 392
           L  F +M  +K      +V +I  V      G+    E+    HG  F  G     SV N
Sbjct: 279 LALFGQMTSDKCLPNYSTVANILPVCSFMEHGKYYGKEV----HGFVFRVGLYVDISVCN 334

Query: 393 CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV 452
            L++ YSK   +  A  +F  M   RD+++WNTII GY +NG+    L L+H++  TG  
Sbjct: 335 ALMTHYSKVYEMRAAESIFRSMN-TRDIITWNTIISGYLMNGYHSRVLDLFHRLLSTGMT 393

Query: 453 PDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASG 512
           PDS + +S+L AC   G    G+ +   +     +         +V   ++     DA  
Sbjct: 394 PDSVSLISLLTACAQVGDAKGGMGVHGYIFRHPVLHQETSLMNSLVSFYSQCNRFDDALH 453

Query: 513 LAGKLLEGMGPNIWRALLSGC 533
               +L     + W A+LS C
Sbjct: 454 AFADILSKDSIS-WNAILSAC 473



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 138/551 (25%), Positives = 246/551 (44%), Gaps = 47/551 (8%)

Query: 2   CIDPYNSSKLLSNYFKSGKIK--EAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAF 59
           C  P  S +L        ++   +A +LFD +P  +    S ++   + NG H  S+   
Sbjct: 14  CFSPTISPRLAHAALCWNRLHKSDAHSLFDAVPATDHRHCSELLRARTANGDHSGSISLL 73

Query: 60  SHMMLSGLLPNSFTMVGVLVAAAGLQNLE-LARSIHGLMVKFGLESD------------- 105
             M+  GL P+   +   + +A+ L++ E L R +HG +V+ G  +              
Sbjct: 74  RGMLGRGLRPDRLALAAAIKSASALRDGESLGRCLHGFVVRTGHAAGVAVAKAVMDMYGR 133

Query: 106 ---------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGL---VPNAVTM 153
                    +F+ +  P  V  N ++ G      F     LF      G    +P AVT+
Sbjct: 134 CGTLADARLVFDEMSCPDTVCWNILITGSSRAGYFDDVFDLFRSMVACGADESMPTAVTV 193

Query: 154 LTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCL---MDLDAAIQIFRE 210
             VI  C  L        IHG  +K GL  D    N+++ +Y+       +D A + F  
Sbjct: 194 AVVIPVCAKLRVLRAGMSIHGYVVKTGLESDTLCGNALISLYAKCGGSGTMDDAHRAFSS 253

Query: 211 MECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLK-R 269
           + CKDV+SW  ++    +     +AL +F +M   + + +   + N++ V + +   K  
Sbjct: 254 IGCKDVVSWNSIIAGHSENGLFKEALALFGQMTSDKCLPNYSTVANILPVCSFMEHGKYY 313

Query: 270 GKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQ 329
           GK++H  V   GL  ++ + N+++  YSK  ++ ++ S+F  +  + +++W  IISGY+ 
Sbjct: 314 GKEVHGFVFRVGLYVDISVCNALMTHYSKVYEMRAAESIFRSMNTRDIITWNTIISGYLM 373

Query: 330 NGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG-FPRYR 388
           NG     L+ F ++      + DS++L+S+LTA  ++   +  + +HG  F      +  
Sbjct: 374 NGYHSRVLDLFHRLLSTGM-TPDSVSLISLLTACAQVGDAKGGMGVHGYIFRHPVLHQET 432

Query: 389 SVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNG-HGETALALYHKMT 447
           S+ N L+S YS+C   D A   F ++   +D +SWN I+      G H E    L+++M 
Sbjct: 433 SLMNSLVSFYSQCNRFDDALHAFADI-LSKDSISWNAILSACAKRGKHIEEFFKLFNEMC 491

Query: 448 ETGEVPDSSTYLSIL---NACGHAGLTND--GLVIFNQMIEENKVKPSQEHYGCVVDLLA 502
                 DS T L+++   N CG   +  +  G  +    I E  V  +      ++D  A
Sbjct: 492 HEVTRWDSVTILNVVRVSNLCGSTKMVREAHGYSLRVGYIGETSVANA------ILDAYA 545

Query: 503 RAGCLSDASGL 513
           + G   DA  L
Sbjct: 546 KCGYPQDADVL 556



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 132/596 (22%), Positives = 264/596 (44%), Gaps = 97/596 (16%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+++Y K  +++ AE++F  +  +++++W+ +I GY +NG+H + +  F  ++ +G+ P+
Sbjct: 336 LMTHYSKVYEMRAAESIFRSMNTRDIITWNTIISGYLMNGYHSRVLDLFHRLLSTGMTPD 395

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGL---ESDLFEGLKNPYL------------ 115
           S +++ +L A A + + +    +HG + +  +   E+ L   L + Y             
Sbjct: 396 SVSLISLLTACAQVGDAKGGMGVHGYIFRHPVLHQETSLMNSLVSFYSQCNRFDDALHAF 455

Query: 116 --------VSCNAIVAGFINN-KLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
                   +S NAI++      K  ++   LFN         ++VT+L V+R     GS 
Sbjct: 456 ADILSKDSISWNAILSACAKRGKHIEEFFKLFNEMCHEVTRWDSVTILNVVRVSNLCGST 515

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMY----------------------------SCL 198
            +    HG ++++G I + SV N++LD Y                            SC 
Sbjct: 516 KMVREAHGYSLRVGYIGETSVANAILDAYAKCGYPQDADVLFRNLAVRNIVTYNTMISCY 575

Query: 199 M---DLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALL 255
           +    ++ A  IF +M  KD  +W  M+ ++        A  +FR+++      DT+++ 
Sbjct: 576 LKNSSVEEAEIIFNQMSKKDQTTWNLMIQVYAQNGMCDQAFSLFRQLQCP----DTISIT 631

Query: 256 NLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK 315
           N++     L  ++  +Q H  ++   L+ ++ L  S++  YSKCG++  + ++F     K
Sbjct: 632 NILLACIHLSLVQLVRQCHGYMLRASLE-DIHLEGSLLDAYSKCGNITDAYNLFQVSPTK 690

Query: 316 SLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQL 375
            LV++TA+I GY  +G A EA+  F +M        D + L ++L+A             
Sbjct: 691 DLVTFTAMIGGYAMHGMAEEAVELFSEMLTLGIGP-DHVVLTALLSACS----------- 738

Query: 376 HGIAFEAGFPRYRSVQ------------NCLISSYSKCGNVDLAY-IVFEEMGFLRDVVS 422
           H    +AG   ++SV+             C++   S+ G +  AY    +    L +  +
Sbjct: 739 HAGLVDAGIKIFKSVREIYRIEPTAEHYTCMVDLLSRGGRLQDAYNFALDMPPHLVNANA 798

Query: 423 WNTIIYGYGVNGH---GETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFN 479
           W ++I    V+G    G+ A      M    E  D   Y+++ N    AG   DG+    
Sbjct: 799 WGSLIGACKVHGDVRIGQLAADQLFSM----EFGDIGNYVTVSNIYA-AGEEWDGVEHVR 853

Query: 480 QMIEENKV-KPSQEHYGCVVDLLAR---AGCLSDASGLAGKLLEGMGPNIWRALLS 531
           ++++   + KP+    G  +    +      + D SG+  + ++ M P    +++S
Sbjct: 854 KLMKSKDMKKPAGCSXGTFIASDVKHQDRSSIHDTSGILYQQIKDMQPGTEHSVVS 909


>gi|302795666|ref|XP_002979596.1| hypothetical protein SELMODRAFT_51482 [Selaginella moellendorffii]
 gi|300152844|gb|EFJ19485.1| hypothetical protein SELMODRAFT_51482 [Selaginella moellendorffii]
          Length = 571

 Score =  235 bits (600), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 164/565 (29%), Positives = 279/565 (49%), Gaps = 39/565 (6%)

Query: 36  VVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHG 95
           VV W+ +I GY+ +G   ++++ F+ M  + +LP+  T V VL A   +Q+LE  R IH 
Sbjct: 1   VVIWTAMITGYAKHGDFSRAIQFFAEMERNHVLPDKITYVAVLGA---IQDLEQGRRIHV 57

Query: 96  LMVKFGLESDL----------------------FEGLKNPYLVSCNAIVAGFINNKLFQQ 133
            + + G ++DL                      FE + +  +VS  +I+A       F  
Sbjct: 58  RIQETGYDTDLVVANALMKMYAACSSLADATRVFEAMDHRDVVSWTSIIAANARAGDFPA 117

Query: 134 AVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLD 193
           A+ LF   +  G  PN +T+L ++  C   G  A    IH      GL  DV V N++L+
Sbjct: 118 AMGLFRRMQLQGTRPNRITLLELLAWCDDPGEGAA---IHERAFASGLRSDVPVCNAILN 174

Query: 194 MYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVA 253
           M++     + A ++F  M  ++ +SWT MM   V      DAL++FR+M    +  D++A
Sbjct: 175 MHAKAGRFETASELFERMPVRNAVSWTAMMAAMVRAGRHDDALRLFRDMEDDGVEPDSIA 234

Query: 254 LLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT 313
            + +I+           + +H  ++ GG  S+  +SN+II  Y++CG L  +   F +I 
Sbjct: 235 FITVINA---CSSAATARWIHGCIIRGGCDSDTAVSNAIIRAYARCGSLKEAYRTFVEIK 291

Query: 314 EK-SLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEIC 372
           E+   VSWT +IS + + G  +  +  F +M  E   + + +TL++++ A    +A++  
Sbjct: 292 ERRDHVSWTTMISAFAEFGRIKRCVQLFREMLLEGVRA-NEVTLITVVNACAGASAIKEG 350

Query: 373 LQLHGIAFEAGFPRYRS-VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYG 431
             +H         R  S V   L+  Y KCG++++A  +F E+    DVVSW +II    
Sbjct: 351 RWVHDCVIGYQLERSSSMVATALLDMYGKCGSLEVAARIFGELE-QPDVVSWTSIIAATA 409

Query: 432 VNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENK--VKP 489
            NG G +A  L+  M   G  P   T++S++ AC HAG+ + G     ++ ++++  ++ 
Sbjct: 410 QNGDGSSAARLFCAMQLEGVRPVDVTFVSVVAACSHAGMVDLGKEFVTRLRKDHREGIEL 469

Query: 490 SQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH--VGRFQDAEALR 547
           + EH GC+VDLLARAG L +A  +   +     P +W A L+GC  +  + R Q A A  
Sbjct: 470 TLEHCGCIVDLLARAGRLEEAECVIDSMPFKPTPAVWMAFLAGCKTYEDISRGQRAAAQI 529

Query: 548 SGSQKKGIIKIPGISFLNSTSRDFG 572
            G  +K    +  +S   + S   G
Sbjct: 530 LGLDEKTTAAVIALSSTYAASDRRG 554



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 116/447 (25%), Positives = 206/447 (46%), Gaps = 30/447 (6%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ L+  Y     + +A  +F+ +  ++VVSW+ +I   +  G    +M  F  M L G 
Sbjct: 71  ANALMKMYAACSSLADATRVFEAMDHRDVVSWTSIIAANARAGDFPAAMGLFRRMQLQGT 130

Query: 68  LPNSFTMVGVLVA---------------AAGLQ-NLELARSI---HGLMVKFGLESDLFE 108
            PN  T++ +L                 A+GL+ ++ +  +I   H    +F   S+LFE
Sbjct: 131 RPNRITLLELLAWCDDPGEGAAIHERAFASGLRSDVPVCNAILNMHAKAGRFETASELFE 190

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            +     VS  A++A  +       A+ LF      G+ P+++  +TVI  C    S A 
Sbjct: 191 RMPVRNAVSWTAMMAAMVRAGRHDDALRLFRDMEDDGVEPDSIAFITVINAC---SSAAT 247

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM-ECKDVISWTRMMGLFV 227
              IHG  I+ G   D +V+N+++  Y+    L  A + F E+ E +D +SWT M+  F 
Sbjct: 248 ARWIHGCIIRGGCDSDTAVSNAIIRAYARCGSLKEAYRTFVEIKERRDHVSWTTMISAFA 307

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ-SEL 286
           +F      +++FREM    +  + V L+ +++  A    +K G+ +H  V+   L+ S  
Sbjct: 308 EFGRIKRCVQLFREMLLEGVRANEVTLITVVNACAGASAIKEGRWVHDCVIGYQLERSSS 367

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            ++ +++ MY KCG L+ +  +F ++ +  +VSWT+II+   QNG    A   F  M+ E
Sbjct: 368 MVATALLDMYGKCGSLEVAARIFGELEQPDVVSWTSIIAATAQNGDGSSAARLFCAMQLE 427

Query: 347 KTDSVDSITLVSILTASGELAAL----EICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
               VD +T VS++ A      +    E   +L     E G         C++   ++ G
Sbjct: 428 GVRPVD-VTFVSVVAACSHAGMVDLGKEFVTRLRKDHRE-GIELTLEHCGCIVDLLARAG 485

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYG 429
            ++ A  V + M F      W   + G
Sbjct: 486 RLEEAECVIDSMPFKPTPAVWMAFLAG 512


>gi|357134267|ref|XP_003568739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 818

 Score =  235 bits (599), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 155/562 (27%), Positives = 282/562 (50%), Gaps = 43/562 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEI-PEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           D   ++ LL+ Y K G ++ A  +FD++   +++VSW+ +    + NG   +S++    M
Sbjct: 75  DAVVANSLLTMYSKCGAVEAARRVFDQMCGVRDLVSWTAMASCLARNGAERESLRLLGEM 134

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES------------------ 104
           +  GL PN+FT+     AA      EL R   G+++ F L++                  
Sbjct: 135 LELGLRPNAFTLCA---AARACFPQELFRLAGGVVLGFVLKTGFWGTDVSVGCALIDMFA 191

Query: 105 ---DL------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLT 155
              DL      F+GL     V    ++  ++      + V LF      G  P+  +M +
Sbjct: 192 RNGDLVAAQRVFDGLIERTSVVWTLLITRYVQAGCASKVVELFLHMLDDGFEPDGYSMSS 251

Query: 156 VIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCL---MDLDAAIQIFREME 212
           +I  C  LGS  L + +H + ++LGL+ D  V+  ++DMY+ L     ++ A ++F+ M 
Sbjct: 252 MISACTELGSVRLGQQLHSVALRLGLVSDSCVSCGLVDMYAKLKMERSMEHARKVFKTMP 311

Query: 213 CKDVISWTRMMGLFVDFEYA-GDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGK 271
             +V+SWT ++  +V       + + +FREM    I  + +   NL+   A L D   G+
Sbjct: 312 RHNVMSWTALISGYVQSGVQENNVMALFREMLNESIRPNHITYSNLLKACANLSDQDSGR 371

Query: 272 QLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNG 331
           Q+HA V+   +     + N++++MY++ G ++ +R  F+Q+ E +++S +  +     N 
Sbjct: 372 QIHAHVLKTSIAHVNVVGNALVSMYAESGCMEEARKAFDQLYETNILSMSPDVETERNNA 431

Query: 332 CAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ 391
                +           D V + T  S+L+A+  +  L    +LH ++ +AGF   + + 
Sbjct: 432 SCSSKIEGM-------DDGVSTFTFASLLSAAASVGLLTKGQKLHALSMKAGFRSDQGIS 484

Query: 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE 451
           N L+S Y++CG ++ A   F+EM    +V+SW +II G   +G+ + AL+++H M   G 
Sbjct: 485 NSLVSMYARCGYLEDACRAFDEMKD-HNVISWTSIISGLAKHGYAKQALSMFHDMILAGV 543

Query: 452 VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDAS 511
            P+  TY+++L+AC H GL  +G   F  M +++ + P  EHY C+VDLLAR+G + +A 
Sbjct: 544 KPNDVTYIAVLSACSHVGLVKEGKEHFRSMQKDHGLLPRMEHYACIVDLLARSGLVEEAR 603

Query: 512 GLAGKLLEGMGPNIWRALLSGC 533
               ++       +W+ LLS C
Sbjct: 604 QFINEMPCKADALVWKTLLSAC 625



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 119/519 (22%), Positives = 241/519 (46%), Gaps = 59/519 (11%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+  + ++G +  A+ +FD + E+  V W+++I  Y   G   K ++ F HM+  G  P+
Sbjct: 186 LIDMFARNGDLVAAQRVFDGLIERTSVVWTLLITRYVQAGCASKVVELFLHMLDDGFEPD 245

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------------- 105
            ++M  ++ A   L ++ L + +H + ++ GL SD                         
Sbjct: 246 GYSMSSMISACTELGSVRLGQQLHSVALRLGLVSDSCVSCGLVDMYAKLKMERSMEHARK 305

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVL-LFNFFRGSGLVPNAVTMLTVIRGCVALG 164
           +F+ +    ++S  A+++G++ + + +  V+ LF       + PN +T   +++ C  L 
Sbjct: 306 VFKTMPRHNVMSWTALISGYVQSGVQENNVMALFREMLNESIRPNHITYSNLLKACANLS 365

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
            +     IH   +K  +     V N+++ MY+    ++ A + F      D +  T ++ 
Sbjct: 366 DQDSGRQIHAHVLKTSIAHVNVVGNALVSMYAESGCMEEARKAF------DQLYETNILS 419

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
           +  D E   +      ++        T    +L+S  A +G L +G++LHA  +  G +S
Sbjct: 420 MSPDVETERNNASCSSKIEGMDDGVSTFTFASLLSAAASVGLLTKGQKLHALSMKAGFRS 479

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           +  +SNS+++MY++CG L+ +   F+++ + +++SWT+IISG  ++G A++AL+ F  M 
Sbjct: 480 DQGISNSLVSMYARCGYLEDACRAFDEMKDHNVISWTSIISGLAKHGYAKQALSMFHDMI 539

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN------------ 392
                  D +T +++L+A   +          G+  E G   +RS+Q             
Sbjct: 540 LAGVKPND-VTYIAVLSACSHV----------GLVKE-GKEHFRSMQKDHGLLPRMEHYA 587

Query: 393 CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETA-LALYHKMTETGE 451
           C++   ++ G V+ A     EM    D + W T++      G+ E   +A  H +    E
Sbjct: 588 CIVDLLARSGLVEEARQFINEMPCKADALVWKTLLSACRTYGNTEIGEIAANHVINL--E 645

Query: 452 VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPS 490
             D + Y+ + N    AGL ++   I + M ++N  K +
Sbjct: 646 PRDPAPYVLLSNLYADAGLWDEVARIRSLMRDKNLSKET 684



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 85/299 (28%), Positives = 141/299 (47%), Gaps = 29/299 (9%)

Query: 249 CDTVALLNLISVNAILGDLKRGKQLHAQVVLGG-LQSELRLSNSIIAMYSKCGDLDSSRS 307
           CD   LL   +  A  GDL+ G+ LH +++    L ++  ++NS++ MYSKCG ++++R 
Sbjct: 41  CDAAKLL---TSAARAGDLRLGRALHRRLLRSEILDTDAVVANSLLTMYSKCGAVEAARR 97

Query: 308 VFNQITE-KSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTA--SG 364
           VF+Q+   + LVSWTA+ S   +NG  RE+L + +    E     ++ TL +   A    
Sbjct: 98  VFDQMCGVRDLVSWTAMASCLARNGAERESL-RLLGEMLELGLRPNAFTLCAAARACFPQ 156

Query: 365 ELAALEICLQLHGIAFEAGFPRYR-SVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSW 423
           EL  L   + L G   + GF     SV   LI  +++ G++  A  VF+ +   R  V W
Sbjct: 157 ELFRLAGGVVL-GFVLKTGFWGTDVSVGCALIDMFARNGDLVAAQRVFDGL-IERTSVVW 214

Query: 424 NTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG-----------HA---- 468
             +I  Y   G     + L+  M + G  PD  +  S+++AC            H+    
Sbjct: 215 TLLITRYVQAGCASKVVELFLHMLDDGFEPDGYSMSSMISACTELGSVRLGQQLHSVALR 274

Query: 469 -GLTNDGLVI--FNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
            GL +D  V      M  + K++ S EH   V   + R   +S  + ++G +  G+  N
Sbjct: 275 LGLVSDSCVSCGLVDMYAKLKMERSMEHARKVFKTMPRHNVMSWTALISGYVQSGVQEN 333


>gi|224101423|ref|XP_002312273.1| predicted protein [Populus trichocarpa]
 gi|222852093|gb|EEE89640.1| predicted protein [Populus trichocarpa]
          Length = 745

 Score =  235 bits (599), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 155/556 (27%), Positives = 288/556 (51%), Gaps = 27/556 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           DP+  + LL  Y + G + +A  +FD+IP +++VSWS +I  Y   G   ++++ F  ++
Sbjct: 133 DPFIETSLLGLYGELGCLTDARKVFDDIPVRDLVSWSSIISSYVDKGEANEALEMFRLLV 192

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES------------------- 104
              +  +   M+ V  A + L  L+LA+SIHG +V+  +++                   
Sbjct: 193 NERVKLDWVIMLSVTEACSKLGILKLAKSIHGYIVRRRVDTCEALDNSLIEMYSSCDDLY 252

Query: 105 ---DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +F  + N   +S  +++  +  +  F++A  +F       + PN +T++ V++ C 
Sbjct: 253 SAERIFVNMANKTFISWTSMIYCYNRSGWFKEAFEIFVKMLELKVEPNVITIMGVLKSCS 312

Query: 162 ALGSRALCELIHGLTIKLGLIL-DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
            L      +LIH   +K G+   D  +   ++++Y+    L    ++   +  ++V+SW 
Sbjct: 313 GLSWLREGKLIHCYALKKGMTFQDDCLGPVLIELYAGCGKLGYCEKVLLAIGERNVVSWN 372

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++ +        +AL +F +M+K  ++ D  +L + IS    +G L+ G+Q+H   +  
Sbjct: 373 TLLSINARQGLFEEALVLFVQMQKRGLMLDFFSLSSAISACGNVGSLQLGRQIHGYAIKR 432

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
            +  E  + N++I MYS+CG  DS+  +FN I +KS V+W +IISG+VQ+G + EA++  
Sbjct: 433 CILGEF-VKNALIGMYSRCGFSDSAYMIFNDIKQKSSVAWNSIISGFVQSGNSIEAIHLV 491

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            +M        D +  +S + A  ++  LE    LH      G  +   ++  L   Y+K
Sbjct: 492 DQMYLNCLKITD-VVFLSAIQACADMVCLEKGKWLHHKLIMYGVEKDLYIETALTDMYAK 550

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CG++  A  VF  M   + VVSW+ +I GYG++G  + A+  +++M E G  P+  T+++
Sbjct: 551 CGDLRTAEGVFHSMS-EKSVVSWSAMISGYGMHGRIDAAITFFNQMVELGIKPNHITFMN 609

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           IL+AC H+G    G   F+ M  +  V+PS EH+ C+VDLL+RAG ++ A  +   +   
Sbjct: 610 ILSACSHSGSVEQGKFYFDLM-RDFGVEPSSEHFACLVDLLSRAGDVNGAYKIINSMPFP 668

Query: 521 MGPNIWRALLSGCVLH 536
              ++   LL+GC +H
Sbjct: 669 ADASVLGNLLNGCRIH 684



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 149/581 (25%), Positives = 281/581 (48%), Gaps = 30/581 (5%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+KL+ +Y + G IK +  +F+     +   W ++I  +  +   E+++  +  M+ +  
Sbjct: 36  STKLIESYAQMGSIKSSTLVFETYQNPDSFMWGVLIKCHVWSHAFEEAILLYDKMLCNEA 95

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
              SF    VL A AG  ++ +   +HG ++K G ++D                      
Sbjct: 96  QITSFVFPSVLRACAGFGDMFIGAKVHGRIIKCGFDNDPFIETSLLGLYGELGCLTDARK 155

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F+ +    LVS ++I++ +++     +A+ +F       +  + V ML+V   C  LG 
Sbjct: 156 VFDDIPVRDLVSWSSIISSYVDKGEANEALEMFRLLVNERVKLDWVIMLSVTEACSKLGI 215

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
             L + IHG  ++  +    +++NS+++MYS   DL +A +IF  M  K  ISWT M+  
Sbjct: 216 LKLAKSIHGYIVRRRVDTCEALDNSLIEMYSSCDDLYSAERIFVNMANKTFISWTSMIYC 275

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ-S 284
           +    +  +A +IF +M + ++  + + ++ ++   + L  L+ GK +H   +  G+   
Sbjct: 276 YNRSGWFKEAFEIFVKMLELKVEPNVITIMGVLKSCSGLSWLREGKLIHCYALKKGMTFQ 335

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           +  L   +I +Y+ CG L     V   I E+++VSW  ++S   + G   EAL  F++M 
Sbjct: 336 DDCLGPVLIELYAGCGKLGYCEKVLLAIGERNVVSWNTLLSINARQGLFEEALVLFVQM- 394

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
           Q++   +D  +L S ++A G + +L++  Q+HG A +        V+N LI  YS+CG  
Sbjct: 395 QKRGLMLDFFSLSSAISACGNVGSLQLGRQIHGYAIKRCILG-EFVKNALIGMYSRCGFS 453

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           D AY++F ++   +  V+WN+II G+  +G+   A+ L  +M           +LS + A
Sbjct: 454 DSAYMIFNDIK-QKSSVAWNSIISGFVQSGNSIEAIHLVDQMYLNCLKITDVVFLSAIQA 512

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C        G  + +++I    V+        + D+ A+ G L  A G+   + E    +
Sbjct: 513 CADMVCLEKGKWLHHKLIMYG-VEKDLYIETALTDMYAKCGDLRTAEGVFHSMSEKSVVS 571

Query: 525 IWRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFLN 565
            W A++SG  +H GR   A    +   + G IK   I+F+N
Sbjct: 572 -WSAMISGYGMH-GRIDAAITFFNQMVELG-IKPNHITFMN 609



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 97/406 (23%), Positives = 187/406 (46%), Gaps = 13/406 (3%)

Query: 154 LTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC 213
           + + R C  L  R L +L   L++   L      +  +++ Y+ +  + ++  +F   + 
Sbjct: 5   MPLFRSCKTL--RQLNQLHAHLSVT-NLSNTAQASTKLIESYAQMGSIKSSTLVFETYQN 61

Query: 214 KDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQL 273
            D   W  ++   V      +A+ ++ +M  +     +    +++   A  GD+  G ++
Sbjct: 62  PDSFMWGVLIKCHVWSHAFEEAILLYDKMLCNEAQITSFVFPSVLRACAGFGDMFIGAKV 121

Query: 274 HAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA 333
           H +++  G  ++  +  S++ +Y + G L  +R VF+ I  + LVSW++IIS YV  G A
Sbjct: 122 HGRIIKCGFDNDPFIETSLLGLYGELGCLTDARKVFDDIPVRDLVSWSSIISSYVDKGEA 181

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC 393
            EAL  F  +  E+   +D + ++S+  A  +L  L++   +HG           ++ N 
Sbjct: 182 NEALEMFRLLVNERV-KLDWVIMLSVTEACSKLGILKLAKSIHGYIVRRRVDTCEALDNS 240

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           LI  YS C ++  A  +F  M   +  +SW ++IY Y  +G  + A  ++ KM E    P
Sbjct: 241 LIEMYSSCDDLYSAERIFVNMAN-KTFISWTSMIYCYNRSGWFKEAFEIFVKMLELKVEP 299

Query: 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL 513
           +  T + +L +C       +G +I    +++            +++L A  G L    G 
Sbjct: 300 NVITIMGVLKSCSGLSWLREGKLIHCYALKKGMTFQDDCLGPVLIELYAGCGKL----GY 355

Query: 514 AGKLLEGMGP-NI--WRALLSGCVLHVGRFQDAEALRSGSQKKGII 556
             K+L  +G  N+  W  LLS      G F++A  L    QK+G++
Sbjct: 356 CEKVLLAIGERNVVSWNTLLS-INARQGLFEEALVLFVQMQKRGLM 400


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  235 bits (599), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 170/599 (28%), Positives = 281/599 (46%), Gaps = 103/599 (17%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  D ++ + +L+ Y ++ ++ +A  LFD +PEK+VVSW+ ++ GY+ NG+ +++ + F 
Sbjct: 107 PERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFD 166

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNA 120
           +M       NS +  G+L A      +E A               LFE   +  L+S N 
Sbjct: 167 NMPEK----NSISWNGLLAAYVHNGRIEEA-------------CLLFESKSDWDLISWNC 209

Query: 121 IVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLG 180
           ++ GF+  K    A  LF+       V +A++  T+I G    G                
Sbjct: 210 LMGGFVRKKKLGDARWLFDKMP----VRDAISWNTMISGYAQGGG--------------- 250

Query: 181 LILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFR 240
                               L  A ++F E   +DV +WT M+  +V      +A   F 
Sbjct: 251 --------------------LSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFD 290

Query: 241 EMRKSRIICDTVALLNLISVNAILGDLKRGKQLH-AQVVLGGLQ-SELRLSNSIIAMYSK 298
           EM +           N +S NA++    + K++  A+ +   +    +   N++I  Y +
Sbjct: 291 EMPEK----------NEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQ 340

Query: 299 CGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVS 358
            GD+  +R  F+ + ++  VSW AII+GY Q+G   EALN F++++Q+  +S++  T   
Sbjct: 341 IGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQD-GESLNRATFGC 399

Query: 359 ILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLR 418
            L+   ++AALE+  Q+HG A + G+     V N L++ Y KCG++D A   FE +   +
Sbjct: 400 ALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIE-EK 458

Query: 419 DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIF 478
           DVVSWNT++ GY  +G G  AL ++  M   G  PD  T + +L+AC H GL + G   F
Sbjct: 459 DVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYF 518

Query: 479 NQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH-- 536
             M ++  V P+ +HY C++DLL RAG L +A  L   +    G   W ALL    +H  
Sbjct: 519 YSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGN 578

Query: 537 -------------------------------VGRFQDAEALRSGSQKKGIIKIPGISFL 564
                                           GR+ DA+ +RS  +  G+ K+PG S++
Sbjct: 579 TELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWV 637



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 101/380 (26%), Positives = 182/380 (47%), Gaps = 30/380 (7%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F  +     VS NA+++G++ N  F  A  LF+      L    V +   +R C    +
Sbjct: 71  VFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDA 130

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
           R L +L+           DV   NS+L  Y+    +D A ++F  M  K+ ISW  ++  
Sbjct: 131 RRLFDLMPE--------KDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAA 182

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQL-HAQVVLGGLQS 284
           +V      +A  +F          ++ +  +LIS N ++G   R K+L  A+ +   +  
Sbjct: 183 YVHNGRIEEACLLF----------ESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPV 232

Query: 285 ELRLS-NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
              +S N++I+ Y++ G L  +R +F++   + + +WTA++SGYVQNG   EA   F +M
Sbjct: 233 RDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEM 292

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
            ++     + ++  +++    +   ++I  +L    FE+   R  S  N +I+ Y + G+
Sbjct: 293 PEK-----NEVSYNAMIAGYVQTKKMDIAREL----FESMPCRNISSWNTMITGYGQIGD 343

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           +  A   F+ M   RD VSW  II GY  +GH E AL ++ ++ + GE  + +T+   L+
Sbjct: 344 IAQARKFFDMMP-QRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALS 402

Query: 464 ACGHAGLTNDGLVIFNQMIE 483
            C        G  I  Q ++
Sbjct: 403 TCADIAALELGKQIHGQAVK 422



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 108/249 (43%), Gaps = 28/249 (11%)

Query: 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD 349
           N  I+ + + G  DS+  VFN +  +S VS+ A+ISGY++N     A N F +M +    
Sbjct: 53  NKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPER--- 109

Query: 350 SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYI 409
             D  +   +LT       L    +L  +  E     +    N L+S Y++ G VD A  
Sbjct: 110 --DLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSW----NSLLSGYAQNGYVDEARE 163

Query: 410 VFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAG 469
           VF+ M   ++ +SWN ++  Y  NG  E A  L+   ++     D  ++  ++       
Sbjct: 164 VFDNMP-EKNSISWNGLLAAYVHNGRIEEACLLFESKSDW----DLISWNCLMGGFVRKK 218

Query: 470 LTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN----I 525
              D   +F++M   + +      +  ++   A+ G LS A  L  +      P      
Sbjct: 219 KLGDARWLFDKMPVRDAIS-----WNTMISGYAQGGGLSQARRLFDE-----SPTRDVFT 268

Query: 526 WRALLSGCV 534
           W A++SG V
Sbjct: 269 WTAMVSGYV 277



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 97/217 (44%), Gaps = 23/217 (10%)

Query: 305 SRSVFN----QITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSIL 360
           S SV N    ++ +  ++ W   IS +++NG    AL+ F  M +  + S +++      
Sbjct: 33  SESVTNNNKPRVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMI----- 87

Query: 361 TASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDV 420
             SG L   +  L  +   F+    R     N +++ Y +   +  A  +F+ M   +DV
Sbjct: 88  --SGYLRNSKFNLARN--LFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMP-EKDV 142

Query: 421 VSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQ 480
           VSWN+++ GY  NG+ + A  ++  M E     +S ++  +L A  H G   +  ++F  
Sbjct: 143 VSWNSLLSGYAQNGYVDEAREVFDNMPEK----NSISWNGLLAAYVHNGRIEEACLLF-- 196

Query: 481 MIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL 517
              E+K       + C++    R   L DA  L  K+
Sbjct: 197 ---ESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKM 230



 Score = 40.8 bits (94), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 28/54 (51%)

Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           + GL + G   F  M EE  V P+ +HY C++DLL R   L + + L    + G
Sbjct: 776 YTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEEGALLGASRIHG 829


>gi|359480813|ref|XP_002277337.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Vitis vinifera]
          Length = 634

 Score =  235 bits (599), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 181/604 (29%), Positives = 292/604 (48%), Gaps = 71/604 (11%)

Query: 5   PYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML 64
           P+  +KL+  Y   G +  A+ LFD++ + NV +W+ ++  YS NG  ++ ++ +S M L
Sbjct: 58  PFMLTKLVQMYADCGDLGSAQALFDKLSQPNVFAWTAILGFYSRNGLSDECVRTYSEMKL 117

Query: 65  SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL--FEGLKNPYLVSCNAIV 122
            G+LP+ +    V  A   L  LE+   +H  +V  G E DL     L + Y  S +   
Sbjct: 118 KGVLPDKYVFPKVFRACGQLLWLEVGIQVHKDVVICGCEFDLQVCNSLIDMYSKSGDVGS 177

Query: 123 AGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLI 182
              + +++ ++ VL +N    SG V N     +V             EL+  + I+ G  
Sbjct: 178 GRRVFDEMVERDVLSWNSMI-SGYVCNGFLEFSV-------------ELLASMRIR-GFE 222

Query: 183 LDVSVNNSVLDMYSCLMDL-DAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFRE 241
            D+   N+V+D Y C M L D A +IF +++  ++IS T ++  +        +L IFRE
Sbjct: 223 PDMVTWNTVMDAY-CRMGLCDEAWEIFEQIKEPNIISLTTLVSGYSRIGNHEKSLGIFRE 281

Query: 242 MRKSRIICDTVALLNLISVNAIL------GDLKRGKQLHAQVVLGGLQSELRLSN--SII 293
           M   R     VA  +L S++++L      G L  G+++H   +     S    S   +++
Sbjct: 282 MMSRR-----VAFPDLDSLSSVLVSCRHLGALVCGQEIHGYGIRSVDSSSFYKSAGAALL 336

Query: 294 AMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDS 353
            MY KC  +  + +VF  +    +V+W A+I G+V       AL  F KM++    + + 
Sbjct: 337 TMYVKCKRIQDALNVFELMDRFDVVTWNAMILGFVDLEMGHLALECFSKMQRSGIMN-NQ 395

Query: 354 ITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEE 413
           IT+ ++L A      L+   Q+H    +  F     V N LI  YSKCG +  AY +F  
Sbjct: 396 ITISTVLPA----CDLKSGKQVHAYITKNSFSSVIPVWNALIHMYSKCGCIGTAYSIFSN 451

Query: 414 MGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTND 473
           M   RD+VSWNT+I G+G++G G+ AL L   M+ +   P+S T+ S L+AC H+GL ++
Sbjct: 452 M-ISRDLVSWNTMIGGFGMHGLGQFALQLLRDMSHSDVCPNSVTFTSALSACSHSGLVDE 510

Query: 474 GLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGC 533
           G+ +F+ M  +    P  EH+ CVVDLLARA  L DA G   K+      +IW ALL+ C
Sbjct: 511 GMELFHTMTRDFGFTPGMEHFSCVVDLLARADRLEDAVGFIEKMPLKPSKHIWSALLAAC 570

Query: 534 ---------------------------------VLHVGRFQDAEALRSGSQKKGIIKIPG 560
                                                GR+ DA A+R   + +G++K  G
Sbjct: 571 RAQQNVSVAKLAAEQLFQLEPEHAGNYVTLSNIYARAGRWDDAVAVRKLMEDRGLVKPSG 630

Query: 561 ISFL 564
            S++
Sbjct: 631 YSWI 634



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 121/219 (55%), Gaps = 2/219 (0%)

Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISG 326
           L +GKQLH  ++L GL     +   ++ MY+ CGDL S++++F+++++ ++ +WTAI+  
Sbjct: 39  LHQGKQLHQHIILCGLDHHPFMLTKLVQMYADCGDLGSAQALFDKLSQPNVFAWTAILGF 98

Query: 327 YVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPR 386
           Y +NG + E +  + +M+  K    D      +  A G+L  LE+ +Q+H      G   
Sbjct: 99  YSRNGLSDECVRTYSEMKL-KGVLPDKYVFPKVFRACGQLLWLEVGIQVHKDVVICGCEF 157

Query: 387 YRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM 446
              V N LI  YSK G+V     VF+EM   RDV+SWN++I GY  NG  E ++ L   M
Sbjct: 158 DLQVCNSLIDMYSKSGDVGSGRRVFDEM-VERDVLSWNSMISGYVCNGFLEFSVELLASM 216

Query: 447 TETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEEN 485
              G  PD  T+ ++++A    GL ++   IF Q+ E N
Sbjct: 217 RIRGFEPDMVTWNTVMDAYCRMGLCDEAWEIFEQIKEPN 255



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 144/299 (48%), Gaps = 38/299 (12%)

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           +H   I  GL     +   ++ MY+   DL +A  +F ++   +V +WT ++G +     
Sbjct: 45  LHQHIILCGLDHHPFMLTKLVQMYADCGDLGSAQALFDKLSQPNVFAWTAILGFYSRNGL 104

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
           + + ++ + EM+   ++ D      +      L  L+ G Q+H  VV+ G + +L++ NS
Sbjct: 105 SDECVRTYSEMKLKGVLPDKYVFPKVFRACGQLLWLEVGIQVHKDVVICGCEFDLQVCNS 164

Query: 292 IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
           +I MYSK GD+ S R VF+++ E+ ++SW ++ISGYV NG        F++   E     
Sbjct: 165 LIDMYSKSGDVGSGRRVFDEMVERDVLSWNSMISGYVCNG--------FLEFSVEL---- 212

Query: 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVF 411
                         LA++ I           GF       N ++ +Y + G  D A+ +F
Sbjct: 213 --------------LASMRI----------RGFEPDMVTWNTVMDAYCRMGLCDEAWEIF 248

Query: 412 EEMGFLRDVVSWNTIIYGYGVNGHGETALALYHK-MTETGEVPDSSTYLSILNACGHAG 469
           E++    +++S  T++ GY   G+ E +L ++ + M+     PD  +  S+L +C H G
Sbjct: 249 EQIK-EPNIISLTTLVSGYSRIGNHEKSLGIFREMMSRRVAFPDLDSLSSVLVSCRHLG 306



 Score = 45.4 bits (106), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 1/117 (0%)

Query: 351 VDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIV 410
           + S  L  +L       AL    QLH      G   +  +   L+  Y+ CG++  A  +
Sbjct: 21  LSSFQLNHLLQLCSNSKALHQGKQLHQHIILCGLDHHPFMLTKLVQMYADCGDLGSAQAL 80

Query: 411 FEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
           F+++    +V +W  I+  Y  NG  +  +  Y +M   G +PD   +  +  ACG 
Sbjct: 81  FDKLS-QPNVFAWTAILGFYSRNGLSDECVRTYSEMKLKGVLPDKYVFPKVFRACGQ 136


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  235 bits (599), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 158/534 (29%), Positives = 246/534 (46%), Gaps = 66/534 (12%)

Query: 100 FGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
           F     LF+ +  P L   N ++ G+      Q  V L+      G+ P+  T   + +G
Sbjct: 68  FQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKG 127

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
                +      +HG  +K GL  +V V+ +++ MY     LD A  +F      DVI+W
Sbjct: 128 FTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITW 187

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
             ++  +       ++ ++F  M   +++  TV L+ ++S  + L DL+ GK++H+ V  
Sbjct: 188 NMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKN 247

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSS-------------------------------RSV 308
             ++S L L N++I MY+ CG++DS+                               R+ 
Sbjct: 248 CKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNY 307

Query: 309 FNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAA 368
           F+++ EK  VSWTA+I GY+++   +EAL  F  M Q      D  T+VS+LTA   L A
Sbjct: 308 FDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNM-QATNVKPDEFTMVSVLTACAHLGA 366

Query: 369 LEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIY 428
           LE+   +              V+N LI  Y KCG+VD A  +F EM   RD  +W  +I 
Sbjct: 367 LELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMS-QRDKFTWTAMIV 425

Query: 429 GYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVK 488
           G  VNGHGE AL ++  M +   +PD  TY+ +L+AC H GL + G   F +M  ++ ++
Sbjct: 426 GLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIE 485

Query: 489 PSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH------------ 536
           P+  HYGC+VDLLARAG L +A  +   +       +W ALL+GC ++            
Sbjct: 486 PNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQ 545

Query: 537 ---------------------VGRFQDAEALRSGSQKKGIIKIPGISFLNSTSR 569
                                  R+ D   LR     KGI K PG S +    R
Sbjct: 546 ILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEMNGR 599



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 132/539 (24%), Positives = 243/539 (45%), Gaps = 74/539 (13%)

Query: 19  GKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVL 78
           G  + A  LFDEIPE N+  W+ +I GYS   F +  +  +  M+  G+ P+ +T   + 
Sbjct: 66  GDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLF 125

Query: 79  VAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPYL--------------------V 116
                   LE  R +HG ++K GL+ ++F    L   YL                    +
Sbjct: 126 KGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVI 185

Query: 117 SCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLT 176
           + N I++ +     F+++  LF       ++P  VT++ V+  C  L      + +H   
Sbjct: 186 TWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYV 245

Query: 177 IKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDF------- 229
               +  ++ + N+++DMY+   ++D+A+ IFR M  +D+ISWT ++  F +        
Sbjct: 246 KNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVAR 305

Query: 230 ---------EYAG---------------DALKIFREMRKSRIICDTVALLNLISVNAILG 265
                    +Y                 +AL++FR M+ + +  D   ++++++  A LG
Sbjct: 306 NYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLG 365

Query: 266 DLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIIS 325
            L+ G+ +   +    ++++L + N++I MY KCGD+D + S+F +++++   +WTA+I 
Sbjct: 366 ALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIV 425

Query: 326 GYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTA--------SGELAALEICLQLHG 377
           G   NG   +AL+ F  M +      D IT + +L+A         G    L +  Q HG
Sbjct: 426 GLAVNGHGEKALDMFSNMLKASI-LPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQ-HG 483

Query: 378 IAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGE 437
           I  E     Y     CL+   ++ G +  AY V E M    + + W  ++ G  V    +
Sbjct: 484 I--EPNIAHY----GCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESD 537

Query: 438 TALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGC 496
            A  +  ++ E  E  + + Y+ + N        ND L    QM+ +  +K +    GC
Sbjct: 538 MAEMVVKQILEL-EPDNGAVYVLLCNIYAACKRWND-LRELRQMMMDKGIKKTP---GC 591



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/397 (23%), Positives = 182/397 (45%), Gaps = 60/397 (15%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + L+  Y   G++  A  +FD  P+ +V++W+++I  Y+  G  E+S + F  M    +L
Sbjct: 157 TALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVL 216

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------------- 106
           P + T+V VL A + L++L   + +H  +    +ES+L                      
Sbjct: 217 PTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGI 276

Query: 107 FEGLKNPYLVSCNAIVAGFIN-------------------------------NKLFQQAV 135
           F  + N  ++S   IV+GF N                               +  F++A+
Sbjct: 277 FRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEAL 336

Query: 136 LLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMY 195
            LF   + + + P+  TM++V+  C  LG+  L E I     +  +  D+ V N+++DMY
Sbjct: 337 ELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMY 396

Query: 196 SCLMDLDAAIQIFREMECKDVISWTRMM-GLFVDFEYAGDALKIFREMRKSRIICDTVAL 254
               D+D A  IFREM  +D  +WT M+ GL V+  +   AL +F  M K+ I+ D +  
Sbjct: 397 FKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVN-GHGEKALDMFSNMLKASILPDEITY 455

Query: 255 LNLISVNAILGDLKRGKQLHAQVV-LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT 313
           + ++S     G + +G++   ++    G++  +     ++ + ++ G L  +  V   + 
Sbjct: 456 IGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMP 515

Query: 314 EKS-LVSWTAIISG---YVQNGCAREALNQFIKMRQE 346
            K+  + W A+++G   Y ++  A   + Q +++  +
Sbjct: 516 IKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPD 552



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 51/77 (66%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L+  YFK G + +AE++F E+ +++  +W+ +I G ++NG  EK++  FS+M+
Sbjct: 385 DLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNML 444

Query: 64  LSGLLPNSFTMVGVLVA 80
            + +LP+  T +GVL A
Sbjct: 445 KASILPDEITYIGVLSA 461


>gi|356533824|ref|XP_003535458.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 630

 Score =  235 bits (599), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 146/492 (29%), Positives = 257/492 (52%), Gaps = 23/492 (4%)

Query: 55  SMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPY 114
           + ++ + ++ +G   N+F    ++ A A    L  +R +             FE ++   
Sbjct: 47  AQQSHAQILANGFAQNAFLATRLVSAYATCGELATSRFV-------------FESVEAKS 93

Query: 115 LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHG 174
           +   N+++ G++ N  F+QA+ LF     +G++P+  T+ TV +    L      +LIHG
Sbjct: 94  VYLWNSLINGYVKNHDFRQALALFREMGRNGMLPDDYTLATVFKVFGELEDLVSGKLIHG 153

Query: 175 LTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV-----DF 229
             I++G + DV V NS++ MY    +   A+++F E   ++V S+  ++         +F
Sbjct: 154 KGIRIGFVSDVVVGNSLMSMYCRCGEFGDAVKVFDETPHRNVGSFNVVISGCAALENCNF 213

Query: 230 EYAGDALKIFREMRKSRIICDTVALLNLISVN-AILGDLKRGKQLHAQVVLGGLQ----S 284
               D    F  M+      D   + +L+ V     G    G++LH  VV  GL     S
Sbjct: 214 TSHDDLSNFFLRMQCEGFKADAFTVASLLPVCCGDTGKWDYGRELHCYVVKNGLDLKMDS 273

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           ++ L +S+I MYS+   +   R VF+Q+  +++  WTA+I+GYVQNG   +AL     M+
Sbjct: 274 DVHLGSSLIDMYSRSKKVVLGRRVFDQMKNRNVYVWTAMINGYVQNGAPDDALVLLRAMQ 333

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
            +     + ++L+S L A G LA L    Q+HG + +       S+ N LI  YSKCG++
Sbjct: 334 MKDGIRPNKVSLISALPACGLLAGLIGGKQIHGFSIKMELNDDVSLCNALIDMYSKCGSL 393

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           D A   FE   + +D ++W+++I  YG++G GE A+  Y+KM + G  PD  T + +L+A
Sbjct: 394 DYARRAFETSSYFKDAITWSSMISAYGLHGRGEEAIIAYYKMLQQGFKPDMITVVGVLSA 453

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C  +GL ++G+ I+  ++ + ++KP+ E   CVVD+L R+G L  A     ++    GP+
Sbjct: 454 CSKSGLVDEGISIYKSLMTKYEIKPTVEICACVVDMLGRSGQLDQALEFIKEMPLDPGPS 513

Query: 525 IWRALLSGCVLH 536
           +W +LL+  V+H
Sbjct: 514 VWGSLLTASVIH 525



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 126/497 (25%), Positives = 234/497 (47%), Gaps = 47/497 (9%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           +++L+S Y   G++  +  +F+ +  K+V  W+ +I+GY  N    +++  F  M  +G+
Sbjct: 66  ATRLVSAYATCGELATSRFVFESVEAKSVYLWNSLINGYVKNHDFRQALALFREMGRNGM 125

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
           LP+ +T+  V      L++L   + IHG  ++ G  SD                      
Sbjct: 126 LPDDYTLATVFKVFGELEDLVSGKLIHGKGIRIGFVSDVVVGNSLMSMYCRCGEFGDAVK 185

Query: 106 LFEGLKNPYLVSCNAIVAG--FINNKLFQQAVLLFNFF---RGSGLVPNAVTMLTVIRGC 160
           +F+   +  + S N +++G   + N  F     L NFF   +  G   +A T+ +++  C
Sbjct: 186 VFDETPHRNVGSFNVVISGCAALENCNFTSHDDLSNFFLRMQCEGFKADAFTVASLLPVC 245

Query: 161 VA-LGSRALCELIHGLTIKLGLIL----DVSVNNSVLDMYSCLMDLDAAIQIFREMECKD 215
               G       +H   +K GL L    DV + +S++DMYS    +    ++F +M+ ++
Sbjct: 246 CGDTGKWDYGRELHCYVVKNGLDLKMDSDVHLGSSLIDMYSRSKKVVLGRRVFDQMKNRN 305

Query: 216 VISWTRMMGLFVDFEYAGDALKIFREMR-KSRIICDTVALLNLISVNAILGDLKRGKQLH 274
           V  WT M+  +V      DAL + R M+ K  I  + V+L++ +    +L  L  GKQ+H
Sbjct: 306 VYVWTAMINGYVQNGAPDDALVLLRAMQMKDGIRPNKVSLISALPACGLLAGLIGGKQIH 365

Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE-KSLVSWTAIISGYVQNGCA 333
              +   L  ++ L N++I MYSKCG LD +R  F   +  K  ++W+++IS Y  +G  
Sbjct: 366 GFSIKMELNDDVSLCNALIDMYSKCGSLDYARRAFETSSYFKDAITWSSMISAYGLHGRG 425

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIA-FEAGFPRYR---- 388
            EA+  + KM Q+     D IT+V +L+A  +   ++      GI+ +++   +Y     
Sbjct: 426 EEAIIAYYKMLQQGFKP-DMITVVGVLSACSKSGLVD-----EGISIYKSLMTKYEIKPT 479

Query: 389 -SVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMT 447
             +  C++    + G +D A    +EM        W +++    ++G+  T    Y  + 
Sbjct: 480 VEICACVVDMLGRSGQLDQALEFIKEMPLDPGPSVWGSLLTASVIHGNSRTRDLAYRHLL 539

Query: 448 ETGEVPDSSTYLSILNA 464
           E  E  + S Y+S+ N 
Sbjct: 540 EL-EPENPSNYISLSNT 555



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 153/325 (47%), Gaps = 11/325 (3%)

Query: 152 TMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM 211
           ++L +++ C+ L S+ L +  H   +  G   +  +   ++  Y+   +L  +  +F  +
Sbjct: 30  SLLHLLQLCIDLRSQKLAQQSHAQILANGFAQNAFLATRLVSAYATCGELATSRFVFESV 89

Query: 212 ECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGK 271
           E K V  W  ++  +V       AL +FREM ++ ++ D   L  +  V   L DL  GK
Sbjct: 90  EAKSVYLWNSLINGYVKNHDFRQALALFREMGRNGMLPDDYTLATVFKVFGELEDLVSGK 149

Query: 272 QLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQ-- 329
            +H + +  G  S++ + NS+++MY +CG+   +  VF++   +++ S+  +ISG     
Sbjct: 150 LIHGKGIRIGFVSDVVVGNSLMSMYCRCGEFGDAVKVFDETPHRNVGSFNVVISGCAALE 209

Query: 330 --NGCAREALNQFIKMRQEKTDSVDSITLVSILTA-SGELAALEICLQLHGIAFEAGFPR 386
             N  + + L+ F    Q +    D+ T+ S+L    G+    +   +LH    + G   
Sbjct: 210 NCNFTSHDDLSNFFLRMQCEGFKADAFTVASLLPVCCGDTGKWDYGRELHCYVVKNGLDL 269

Query: 387 YRS----VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALAL 442
                  + + LI  YS+   V L   VF++M   R+V  W  +I GY  NG  + AL L
Sbjct: 270 KMDSDVHLGSSLIDMYSRSKKVVLGRRVFDQMKN-RNVYVWTAMINGYVQNGAPDDALVL 328

Query: 443 YHKMT-ETGEVPDSSTYLSILNACG 466
              M  + G  P+  + +S L ACG
Sbjct: 329 LRAMQMKDGIRPNKVSLISALPACG 353



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/239 (21%), Positives = 106/239 (44%), Gaps = 37/239 (15%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM- 62
           D +  S L+  Y +S K+     +FD++  +NV  W+ +I+GY  NG  + ++     M 
Sbjct: 274 DVHLGSSLIDMYSRSKKVVLGRRVFDQMKNRNVYVWTAMINGYVQNGAPDDALVLLRAMQ 333

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--LFEGLKNPY------ 114
           M  G+ PN  +++  L A   L  L   + IHG  +K  L  D  L   L + Y      
Sbjct: 334 MKDGIRPNKVSLISALPACGLLAGLIGGKQIHGFSIKMELNDDVSLCNALIDMYSKCGSL 393

Query: 115 ---------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                           ++ +++++ +  +   ++A++ +      G  P+ +T++ V+  
Sbjct: 394 DYARRAFETSSYFKDAITWSSMISAYGLHGRGEEAIIAYYKMLQQGFKPDMITVVGVLSA 453

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMD-------LDAAIQIFREM 211
           C   G      +  G++I   L+    +  +V ++ +C++D       LD A++  +EM
Sbjct: 454 CSKSGL-----VDEGISIYKSLMTKYEIKPTV-EICACVVDMLGRSGQLDQALEFIKEM 506


>gi|449450916|ref|XP_004143208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 616

 Score =  235 bits (599), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 150/494 (30%), Positives = 253/494 (51%), Gaps = 37/494 (7%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F+ +  P +V+ N++V G++       AV LF      G+ P   ++   + GC  L  
Sbjct: 125 VFDEMSCPSVVTWNSLVTGYLQAGYPLMAVSLFLEMLKKGIEPTPFSLSGGLVGCSQLQK 184

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
             L   +H +++KL    +V V   ++DMYS   +L  + ++F  M  K+V +WT M+  
Sbjct: 185 GDLGSQLHAMSLKLRFSSNVVVGTGLIDMYSKCCNLQDSRRVFDIMLNKNVFTWTSMISG 244

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +   +   +A+ + REM    +  + +   +L+S  +      + KQ+H +++  G +S 
Sbjct: 245 YARNQLPHEAMILMREMLHLNLKPNGMTYNSLLSSFSCPRHFDKCKQIHCRIITEGYESN 304

Query: 286 LRLSNSIIAMYSKC-GDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
             ++ +++  YS+C G L+  R V + I     +SW A+I+G+   G   EAL  FI+MR
Sbjct: 305 NYIAVTLVTAYSECCGSLEDYRKVCSNIRMSDQISWNAVIAGFTNLGIGEEALECFIQMR 364

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
           +EK D VD  T  SI  A G  +ALE   Q+HG+ ++ G+    SVQN L+S Y++ G +
Sbjct: 365 REKFD-VDFFTFTSIFKAIGMTSALEEGKQIHGLVYKTGYTLNLSVQNGLVSMYARSGAI 423

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
             + +VF  M    D++SWN+++ G   +G GE A+ L+ KM  T   PD++++L++L A
Sbjct: 424 RDSKMVFSMMN-EHDLISWNSLLSGCAYHGCGEEAIDLFEKMRRTCIKPDNTSFLAVLTA 482

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQ-EHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
           C H GL + GL  F  M     V+P + EHY  +VDL  RAG L +A      +    G 
Sbjct: 483 CSHVGLLDKGLEYFKLMRNSELVEPPKLEHYATLVDLFGRAGKLYEAEAFIESIPIEPGI 542

Query: 524 NIWRALLSGCVLH------------------------------VGR---FQDAEALRSGS 550
           +I++ALLS C++H                              +GR   + DA ++R   
Sbjct: 543 SIYKALLSACLIHGNKDIAIRTAKKLLELYPYDPATYIMLSNALGRDGYWDDAASIRRLM 602

Query: 551 QKKGIIKIPGISFL 564
             +G+ K PG S++
Sbjct: 603 SNRGVKKEPGFSWM 616



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 117/504 (23%), Positives = 230/504 (45%), Gaps = 27/504 (5%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           ++PY  + L+  Y K   I +A  +FDE+   +VV+W+ ++ GY   G+   ++  F  M
Sbjct: 101 LNPYIFTALVDMYGKCWSISDAHKVFDEMSCPSVVTWNSLVTGYLQAGYPLMAVSLFLEM 160

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPYLVSCN- 119
           +  G+ P  F++ G LV  + LQ  +L   +H + +K    S++    GL + Y   CN 
Sbjct: 161 LKKGIEPTPFSLSGGLVGCSQLQKGDLGSQLHAMSLKLRFSSNVVVGTGLIDMYSKCCNL 220

Query: 120 -------------------AIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                              ++++G+  N+L  +A++L        L PN +T  +++   
Sbjct: 221 QDSRRVFDIMLNKNVFTWTSMISGYARNQLPHEAMILMREMLHLNLKPNGMTYNSLLSSF 280

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYS-CLMDLDAAIQIFREMECKDVISW 219
                   C+ IH   I  G   +  +  +++  YS C   L+   ++   +   D ISW
Sbjct: 281 SCPRHFDKCKQIHCRIITEGYESNNYIAVTLVTAYSECCGSLEDYRKVCSNIRMSDQISW 340

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
             ++  F +     +AL+ F +MR+ +   D     ++     +   L+ GKQ+H  V  
Sbjct: 341 NAVIAGFTNLGIGEEALECFIQMRREKFDVDFFTFTSIFKAIGMTSALEEGKQIHGLVYK 400

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G    L + N +++MY++ G +  S+ VF+ + E  L+SW +++SG   +GC  EA++ 
Sbjct: 401 TGYTLNLSVQNGLVSMYARSGAIRDSKMVFSMMNEHDLISWNSLLSGCAYHGCGEEAIDL 460

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN--CLISS 397
           F KMR+      D+ + +++LTA   +  L+  L+   +   +       +++   L+  
Sbjct: 461 FEKMRRTCIKP-DNTSFLAVLTACSHVGLLDKGLEYFKLMRNSELVEPPKLEHYATLVDL 519

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           + + G +  A    E +     +  +  ++    ++G+ + A+    K+ E     D +T
Sbjct: 520 FGRAGKLYEAEAFIESIPIEPGISIYKALLSACLIHGNKDIAIRTAKKLLELYPY-DPAT 578

Query: 458 YLSILNACGHAGLTNDGLVIFNQM 481
           Y+ + NA G  G  +D   I   M
Sbjct: 579 YIMLSNALGRDGYWDDAASIRRLM 602



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 105/370 (28%), Positives = 176/370 (47%), Gaps = 13/370 (3%)

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           +H   IKLG  L+  +  +++DMY     +  A ++F EM C  V++W  ++  ++   Y
Sbjct: 90  VHSTIIKLGFSLNPYIFTALVDMYGKCWSISDAHKVFDEMSCPSVVTWNSLVTGYLQAGY 149

Query: 232 AGDALKIFREMRKSRIICDTVALL-NLISVNAIL-GDLKRGKQLHAQVVLGGLQSELRLS 289
              A+ +F EM K  I     +L   L+  + +  GDL  G QLHA  +     S + + 
Sbjct: 150 PLMAVSLFLEMLKKGIEPTPFSLSGGLVGCSQLQKGDL--GSQLHAMSLKLRFSSNVVVG 207

Query: 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ--EK 347
             +I MYSKC +L  SR VF+ +  K++ +WT++ISGY +N    EA+   I MR+    
Sbjct: 208 TGLIDMYSKCCNLQDSRRVFDIMLNKNVFTWTSMISGYARNQLPHEAM---ILMREMLHL 264

Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK-CGNVDL 406
               + +T  S+L++       + C Q+H      G+     +   L+++YS+ CG+++ 
Sbjct: 265 NLKPNGMTYNSLLSSFSCPRHFDKCKQIHCRIITEGYESNNYIAVTLVTAYSECCGSLED 324

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
              V   +  + D +SWN +I G+   G GE AL  + +M       D  T+ SI  A G
Sbjct: 325 YRKVCSNIR-MSDQISWNAVIAGFTNLGIGEEALECFIQMRREKFDVDFFTFTSIFKAIG 383

Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIW 526
                 +G  I   + +           G +V + AR+G + D S +   ++       W
Sbjct: 384 MTSALEEGKQIHGLVYKTGYTLNLSVQNG-LVSMYARSGAIRD-SKMVFSMMNEHDLISW 441

Query: 527 RALLSGCVLH 536
            +LLSGC  H
Sbjct: 442 NSLLSGCAYH 451



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 102/198 (51%), Gaps = 2/198 (1%)

Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISG 326
           L  G Q+H+ ++  G      +  +++ MY KC  +  +  VF++++  S+V+W ++++G
Sbjct: 84  LDFGIQVHSTIIKLGFSLNPYIFTALVDMYGKCWSISDAHKVFDEMSCPSVVTWNSLVTG 143

Query: 327 YVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPR 386
           Y+Q G    A++ F++M ++  +     +L   L    +L   ++  QLH ++ +  F  
Sbjct: 144 YLQAGYPLMAVSLFLEMLKKGIEPT-PFSLSGGLVGCSQLQKGDLGSQLHAMSLKLRFSS 202

Query: 387 YRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM 446
              V   LI  YSKC N+  +  VF+ M   ++V +W ++I GY  N     A+ L  +M
Sbjct: 203 NVVVGTGLIDMYSKCCNLQDSRRVFDIM-LNKNVFTWTSMISGYARNQLPHEAMILMREM 261

Query: 447 TETGEVPDSSTYLSILNA 464
                 P+  TY S+L++
Sbjct: 262 LHLNLKPNGMTYNSLLSS 279



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 5/119 (4%)

Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
           + L Q ++     T  + + T +SI T S     L+  +Q+H    + GF     +   L
Sbjct: 54  QFLVQLLRHGSPPTPPILTKT-ISICTKS---TLLDFGIQVHSTIIKLGFSLNPYIFTAL 109

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           +  Y KC ++  A+ VF+EM     VV+WN+++ GY   G+   A++L+ +M + G  P
Sbjct: 110 VDMYGKCWSISDAHKVFDEMS-CPSVVTWNSLVTGYLQAGYPLMAVSLFLEMLKKGIEP 167


>gi|297721495|ref|NP_001173110.1| Os02g0670700 [Oryza sativa Japonica Group]
 gi|50251347|dbj|BAD28323.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|255671158|dbj|BAH91839.1| Os02g0670700 [Oryza sativa Japonica Group]
          Length = 687

 Score =  235 bits (599), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 168/581 (28%), Positives = 276/581 (47%), Gaps = 31/581 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYS--INGFHEKSMKAFSH 61
           D +  S L+  Y K  ++ +++ +F EI +K+VV+++ +I GYS  ++     +      
Sbjct: 63  DKFIGSSLIVLYSKLHRMDDSQGVFKEIIDKDVVAYTSMITGYSEIVDSVAWNAFDIAID 122

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIH--------------------GLMVKFG 101
           M+   L  N  TM+ +L  A  L  L+  +S+H                     L  + G
Sbjct: 123 MLQGNLEVNRVTMISLLQIAGNLGALKEGKSLHCYSIRRALVVSDYILETCIVNLYTRCG 182

Query: 102 LESDLFEGLKNP--YLVSCNAIVAGFIN-NKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                   L+N      S NA+++G     + F     L        + P++VT   VI 
Sbjct: 183 AYQSAVATLQNSKGTAASWNAMLSGLTRAGQSFDAIHYLSVMLHEHKITPDSVTFANVIS 242

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            CV +        IH   I+  + LDV +  +++ +YS    +  +  +F ++  KD +S
Sbjct: 243 ACVEVCYFGYAASIHTYLIRRYIPLDVVLATALVKVYSKCKKITISRHLFNQLIVKDAVS 302

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           +  MM  ++    A +A  +   M    I+ D   +L+L++  A   DL RG+ +H   +
Sbjct: 303 YNAMMYGYLHNGMANEATSLLNYMMAEGIVPDFATVLSLLAAFADQRDLVRGRWIHGFGI 362

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
             G  S+  + N I+ MYS CG   ++R +F+ + +KSLVSWTA++ G +  G   E + 
Sbjct: 363 RHGFCSDGDVENHILYMYSVCGKPAAARVIFDLLEQKSLVSWTAMMKGCLPYGHGDEVV- 421

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
           Q   + Q+  +  DS++LV+ + A  EL  L    Q+H   + +   + +   N LIS+Y
Sbjct: 422 QLFHLMQKHGEKPDSMSLVTAVQAVSELGHLNGLKQIHCFVYRSLLEKDKITANSLISAY 481

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
           +KCG +DL+  +F  + + R++ +WN II  Y ++G     L ++ +M E    PD  T+
Sbjct: 482 AKCGRLDLSVGLFFSLEY-RNLDTWNAIISAYAMHGFYINMLEMFKQMEEENIQPDELTF 540

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
            ++L AC HAGL  DG  +FN M     V P +EHYGC+VDLL RAG L D         
Sbjct: 541 STVLTACSHAGLVKDGWRMFNSMTSVYSVLPQEEHYGCMVDLLGRAGHLEDGYKFIKLST 600

Query: 519 EGMGPNIWRALLSGCVLH----VGRFQDAEALRSGSQKKGI 555
                 I+  L+S C  H    +      E L  G QK GI
Sbjct: 601 LKDKSTIFCVLISACRTHRNTQLALAISKELLEHGPQKPGI 641



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 174/336 (51%), Gaps = 5/336 (1%)

Query: 132 QQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSV 191
           ++ ++L+   +   +  +  T+  V++ C  L +  L + +H  ++K GL  D  + +S+
Sbjct: 11  EEVIILYKRLKLHQIGLDGKTITFVLKSCTELENLYLGKGMHVDSLKFGLSGDKFIGSSL 70

Query: 192 LDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDF--EYAGDALKIFREMRKSRIIC 249
           + +YS L  +D +  +F+E+  KDV+++T M+  + +     A +A  I  +M +  +  
Sbjct: 71  IVLYSKLHRMDDSQGVFKEIIDKDVVAYTSMITGYSEIVDSVAWNAFDIAIDMLQGNLEV 130

Query: 250 DTVALLNLISVNAILGDLKRGKQLHAQVVLGGL-QSELRLSNSIIAMYSKCGDLDSSRSV 308
           + V +++L+ +   LG LK GK LH   +   L  S+  L   I+ +Y++CG   S+ + 
Sbjct: 131 NRVTMISLLQIAGNLGALKEGKSLHCYSIRRALVVSDYILETCIVNLYTRCGAYQSAVAT 190

Query: 309 FNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAA 368
             Q ++ +  SW A++SG  + G + +A++    M  E   + DS+T  ++++A  E+  
Sbjct: 191 L-QNSKGTAASWNAMLSGLTRAGQSFDAIHYLSVMLHEHKITPDSVTFANVISACVEVCY 249

Query: 369 LEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIY 428
                 +H        P    +   L+  YSKC  + ++  +F ++  ++D VS+N ++Y
Sbjct: 250 FGYAASIHTYLIRRYIPLDVVLATALVKVYSKCKKITISRHLFNQL-IVKDAVSYNAMMY 308

Query: 429 GYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           GY  NG    A +L + M   G VPD +T LS+L A
Sbjct: 309 GYLHNGMANEATSLLNYMMAEGIVPDFATVLSLLAA 344



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 120/518 (23%), Positives = 240/518 (46%), Gaps = 41/518 (7%)

Query: 50  GFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---- 105
           G+ E+ +  +  + L  +  +  T+  VL +   L+NL L + +H   +KFGL  D    
Sbjct: 8   GYPEEVIILYKRLKLHQIGLDGKTITFVLKSCTELENLYLGKGMHVDSLKFGLSGDKFIG 67

Query: 106 ------------------LFEGLKNPYLVSCNAIVAGF---INNKLFQQAVLLFNFFRGS 144
                             +F+ + +  +V+  +++ G+   +++  +    +  +  +G+
Sbjct: 68  SSLIVLYSKLHRMDDSQGVFKEIIDKDVVAYTSMITGYSEIVDSVAWNAFDIAIDMLQGN 127

Query: 145 GLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLIL-DVSVNNSVLDMYSCLMDLDA 203
            L  N VTM+++++    LG+    + +H  +I+  L++ D  +   ++++Y+      +
Sbjct: 128 -LEVNRVTMISLLQIAGNLGALKEGKSLHCYSIRRALVVSDYILETCIVNLYTRCGAYQS 186

Query: 204 AIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREM-RKSRIICDTVALLNLISVNA 262
           A+   +  +     SW  M+        + DA+     M  + +I  D+V   N+IS   
Sbjct: 187 AVATLQNSK-GTAASWNAMLSGLTRAGQSFDAIHYLSVMLHEHKITPDSVTFANVISACV 245

Query: 263 ILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTA 322
            +        +H  ++   +  ++ L+ +++ +YSKC  +  SR +FNQ+  K  VS+ A
Sbjct: 246 EVCYFGYAASIHTYLIRRYIPLDVVLATALVKVYSKCKKITISRHLFNQLIVKDAVSYNA 305

Query: 323 IISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEA 382
           ++ GY+ NG A EA +    M  E     D  T++S+L A  +   L     +HG     
Sbjct: 306 MMYGYLHNGMANEATSLLNYMMAEGIVP-DFATVLSLLAAFADQRDLVRGRWIHGFGIRH 364

Query: 383 GFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALAL 442
           GF     V+N ++  YS CG    A ++F+ +   + +VSW  ++ G    GHG+  + L
Sbjct: 365 GFCSDGDVENHILYMYSVCGKPAAARVIFDLLE-QKSLVSWTAMMKGCLPYGHGDEVVQL 423

Query: 443 YHKMTETGEVPDSSTYLSILNAC---GHA-GLTNDGLVIFNQMIEENKVKPSQEHYGCVV 498
           +H M + GE PDS + ++ + A    GH  GL      ++  ++E++K+  +      ++
Sbjct: 424 FHLMQKHGEKPDSMSLVTAVQAVSELGHLNGLKQIHCFVYRSLLEKDKITANS-----LI 478

Query: 499 DLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
              A+ G L  + GL    LE    + W A++S   +H
Sbjct: 479 SAYAKCGRLDLSVGLFFS-LEYRNLDTWNAIISAYAMH 515



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/317 (22%), Positives = 150/317 (47%), Gaps = 37/317 (11%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D   ++ L+  Y K  KI  + +LF+++  K+ VS++ +++GY  NG   ++    ++M
Sbjct: 267 LDVVLATALVKVYSKCKKITISRHLFNQLIVKDAVSYNAMMYGYLHNGMANEATSLLNYM 326

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
           M  G++P+  T++ +L A A  ++L   R IHG  ++ G  SD                 
Sbjct: 327 MAEGIVPDFATVLSLLAAFADQRDLVRGRWIHGFGIRHGFCSDGDVENHILYMYSVCGKP 386

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +F+ L+   LVS  A++ G +      + V LF+  +  G  P++++++T ++  
Sbjct: 387 AAARVIFDLLEQKSLVSWTAMMKGCLPYGHGDEVVQLFHLMQKHGEKPDSMSLVTAVQAV 446

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             LG     + IH    +  L  D    NS++  Y+    LD ++ +F  +E +++ +W 
Sbjct: 447 SELGHLNGLKQIHCFVYRSLLEKDKITANSLISAYAKCGRLDLSVGLFFSLEYRNLDTWN 506

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++  +    +  + L++F++M +  I  D +    +++  +  G +K G          
Sbjct: 507 AIISAYAMHGFYINMLEMFKQMEEENIQPDELTFSTVLTACSHAGLVKDG---------- 556

Query: 281 GLQSELRLSNSIIAMYS 297
                 R+ NS+ ++YS
Sbjct: 557 -----WRMFNSMTSVYS 568



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 79/185 (42%), Gaps = 22/185 (11%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C D    + +L  Y   GK   A  +FD + +K++VSW+ ++ G    G  ++ ++ F  
Sbjct: 367 CSDGDVENHILYMYSVCGKPAAARVIFDLLEQKSLVSWTAMMKGCLPYGHGDEVVQLFHL 426

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------- 105
           M   G  P+S ++V  + A + L +L   + IH  + +  LE D                
Sbjct: 427 MQKHGEKPDSMSLVTAVQAVSELGHLNGLKQIHCFVYRSLLEKDKITANSLISAYAKCGR 486

Query: 106 ------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                 LF  L+   L + NAI++ +  +  +   + +F       + P+ +T  TV+  
Sbjct: 487 LDLSVGLFFSLEYRNLDTWNAIISAYAMHGFYINMLEMFKQMEEENIQPDELTFSTVLTA 546

Query: 160 CVALG 164
           C   G
Sbjct: 547 CSHAG 551


>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Vitis vinifera]
          Length = 703

 Score =  235 bits (599), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 140/434 (32%), Positives = 232/434 (53%), Gaps = 7/434 (1%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLF-NFFRGSGLVPNAVTMLTVIRGCVALG 164
           LF+G++   +VS  A++AG+ +N L  + + LF        + PN     T+I  C   G
Sbjct: 84  LFDGMRKRNVVSWGALMAGYFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSDSG 143

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
                   HG  +K GL+    V N+++ MYS   D+  A+ ++ E+   DV S+  ++ 
Sbjct: 144 QVVEGWQCHGYALKSGLVFHQYVKNALICMYSRRSDVKGAMSVWYEVPGLDVFSYNIIIN 203

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
             ++  Y  +AL++   M    I+ D V  +    + + L DL+ G Q+H ++   G + 
Sbjct: 204 GLLENGYPSEALEVLDRMVDECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMFRTGAEY 263

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           +  +S++II MY KCG++ ++R VFN++  K++VSWTAI++ Y QNGC  EALN F +M 
Sbjct: 264 DSFVSSAIIDMYGKCGNILNARKVFNRLQTKNVVSWTAILAAYSQNGCFEEALNFFPEM- 322

Query: 345 QEKTDSV--DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
             + D +  +  T   +L +   ++AL     LH    ++GF  +  V N LI+ YSK G
Sbjct: 323 --EVDGLLPNEYTFAVLLNSCAGISALGHGKLLHTRIKKSGFEDHIIVGNALINMYSKSG 380

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
           +++ A+ VF EM   RD ++W+ +I G   +G G  AL ++ +M    E P   T++ +L
Sbjct: 381 SIEAAHKVFLEM-ICRDSITWSAMICGLSHHGLGREALVVFQEMLAAKECPHYVTFVGVL 439

Query: 463 NACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMG 522
           +AC H G   +G    NQ++++  ++P  EHY C+V LL +AG L +A            
Sbjct: 440 SACAHLGSVQEGFYYLNQLMKQTGIEPGVEHYTCIVGLLCKAGRLDEAENFMKSTPVKWD 499

Query: 523 PNIWRALLSGCVLH 536
              WR LLS C +H
Sbjct: 500 VVAWRTLLSACHVH 513



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 125/509 (24%), Positives = 228/509 (44%), Gaps = 41/509 (8%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM-LSGLLP 69
           L++ Y K  +I  A  LFD + ++NVVSW  ++ GY  NG   + ++ F  M+ +  + P
Sbjct: 68  LINLYAKCDQIMVARILFDGMRKRNVVSWGALMAGYFHNGLVLEVLRLFKTMISVDYMRP 127

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL----------------ESDLFEGLKNP 113
           N +    ++ + +    +      HG  +K GL                 SD+   +   
Sbjct: 128 NEYIFATIISSCSDSGQVVEGWQCHGYALKSGLVFHQYVKNALICMYSRRSDVKGAMSVW 187

Query: 114 YLV------SCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRA 167
           Y V      S N I+ G + N    +A+ + +      +V + VT +T    C  L    
Sbjct: 188 YEVPGLDVFSYNIIINGLLENGYPSEALEVLDRMVDECIVWDNVTYVTAFGLCSHLKDLR 247

Query: 168 LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
           L   +H    + G   D  V+++++DMY    ++  A ++F  ++ K+V+SWT ++  + 
Sbjct: 248 LGLQVHCRMFRTGAEYDSFVSSAIIDMYGKCGNILNARKVFNRLQTKNVVSWTAILAAYS 307

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
                 +AL  F EM    ++ +      L++  A +  L  GK LH ++   G +  + 
Sbjct: 308 QNGCFEEALNFFPEMEVDGLLPNEYTFAVLLNSCAGISALGHGKLLHTRIKKSGFEDHII 367

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
           + N++I MYSK G ++++  VF ++  +  ++W+A+I G   +G  REAL  F +M   K
Sbjct: 368 VGNALINMYSKSGSIEAAHKVFLEMICRDSITWSAMICGLSHHGLGREALVVFQEMLAAK 427

Query: 348 TDSVDSITLVSILTASGELAALE-----ICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
            +    +T V +L+A   L +++     +   +     E G   Y     C++    K G
Sbjct: 428 -ECPHYVTFVGVLSACAHLGSVQEGFYYLNQLMKQTGIEPGVEHY----TCIVGLLCKAG 482

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVN---GHGETALALYHKMTETGEVPDSSTYL 459
            +D A    +      DVV+W T++    V+   G G+    L  +M    +  D  TY+
Sbjct: 483 RLDEAENFMKSTPVKWDVVAWRTLLSACHVHQNYGLGKKVAELVLQM----DPGDVGTYI 538

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVK 488
            + N    A    DG+V   +++ E  VK
Sbjct: 539 LLSNMYAKAKRW-DGVVKIRKLMRERNVK 566



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 162/348 (46%), Gaps = 30/348 (8%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y  + L+  Y +   +K A +++ E+P  +V S++I+I+G   NG+  ++++    M+  
Sbjct: 165 YVKNALICMYSRRSDVKGAMSVWYEVPGLDVFSYNIIINGLLENGYPSEALEVLDRMVDE 224

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-------------------- 105
            ++ ++ T V      + L++L L   +H  M + G E D                    
Sbjct: 225 CIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMFRTGAEYDSFVSSAIIDMYGKCGNILNA 284

Query: 106 --LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
             +F  L+   +VS  AI+A +  N  F++A+  F      GL+PN  T   ++  C  +
Sbjct: 285 RKVFNRLQTKNVVSWTAILAAYSQNGCFEEALNFFPEMEVDGLLPNEYTFAVLLNSCAGI 344

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
            +    +L+H    K G    + V N++++MYS    ++AA ++F EM C+D I+W+ M+
Sbjct: 345 SALGHGKLLHTRIKKSGFEDHIIVGNALINMYSKSGSIEAAHKVFLEMICRDSITWSAMI 404

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG----KQLHAQVVL 279
                     +AL +F+EM  ++     V  + ++S  A LG ++ G     QL  Q   
Sbjct: 405 CGLSHHGLGREALVVFQEMLAAKECPHYVTFVGVLSACAHLGSVQEGFYYLNQLMKQT-- 462

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK-SLVSWTAIISG 326
            G++  +     I+ +  K G LD + +       K  +V+W  ++S 
Sbjct: 463 -GIEPGVEHYTCIVGLLCKAGRLDEAENFMKSTPVKWDVVAWRTLLSA 509



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 138/282 (48%), Gaps = 9/282 (3%)

Query: 255 LNLISVNAILGDLKRGKQLHAQVVLG--GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQI 312
           + L+ V+A   +LK GK +HA +++     +  +   NS+I +Y+KC  +  +R +F+ +
Sbjct: 29  IQLLKVSADTKNLKFGKMIHAHLIITNQATKDNIVQVNSLINLYAKCDQIMVARILFDGM 88

Query: 313 TEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEIC 372
            ++++VSW A+++GY  NG   E L  F  M        +     +I+++  +   +   
Sbjct: 89  RKRNVVSWGALMAGYFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSDSGQVVEG 148

Query: 373 LQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGV 432
            Q HG A ++G   ++ V+N LI  YS+  +V  A  V+ E+  L DV S+N II G   
Sbjct: 149 WQCHGYALKSGLVFHQYVKNALICMYSRRSDVKGAMSVWYEVPGL-DVFSYNIIINGLLE 207

Query: 433 NGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQE 492
           NG+   AL +  +M +   V D+ TY++    C H      GL +  +M        S  
Sbjct: 208 NGYPSEALEVLDRMVDECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMFRTGAEYDSFV 267

Query: 493 HYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI--WRALLSG 532
               ++D+  + G + +A  +  +L      N+  W A+L+ 
Sbjct: 268 S-SAIIDMYGKCGNILNARKVFNRL---QTKNVVSWTAILAA 305



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 93/377 (24%), Positives = 159/377 (42%), Gaps = 72/377 (19%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + SS ++  Y K G I  A  +F+ +  KNVVSW+ ++  YS NG  E+++  F  M 
Sbjct: 264 DSFVSSAIIDMYGKCGNILNARKVFNRLQTKNVVSWTAILAAYSQNGCFEEALNFFPEME 323

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPY------- 114
           + GLLPN +T   +L + AG+  L   + +H  + K G E  +  G  L N Y       
Sbjct: 324 VDGLLPNEYTFAVLLNSCAGISALGHGKLLHTRIKKSGFEDHIIVGNALINMYSKSGSIE 383

Query: 115 -------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                         ++ +A++ G  ++ L ++A+++F     +   P+ VT + V+  C 
Sbjct: 384 AAHKVFLEMICRDSITWSAMICGLSHHGLGREALVVFQEMLAAKECPHYVTFVGVLSACA 443

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            LGS     +  G      L+    +   V + Y+C++ L           CK       
Sbjct: 444 HLGS-----VQEGFYYLNQLMKQTGIEPGV-EHYTCIVGL----------LCK------- 480

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL-- 279
                     AG   +    M+ + +  D VA   L+S   +  +   GK++ A++VL  
Sbjct: 481 ----------AGRLDEAENFMKSTPVKWDVVAWRTLLSACHVHQNYGLGKKV-AELVLQM 529

Query: 280 --GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSL-----VSWTAI---ISGYVQ 329
             G + + + LSN    MY+K    D    +   + E+++      SW  I   I  +V 
Sbjct: 530 DPGDVGTYILLSN----MYAKAKRWDGVVKIRKLMRERNVKKEPGASWIEIRNSIHVFVS 585

Query: 330 NGCAREALNQFIKMRQE 346
            G      NQ  +  QE
Sbjct: 586 EGKTHPESNQIYEKVQE 602


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  235 bits (599), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 143/494 (28%), Positives = 248/494 (50%), Gaps = 39/494 (7%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F  +  P   + N ++ G    +    A+LLF       +  +  T  +V++ C  + +
Sbjct: 77  IFNHIDKPESSAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKACSRMKA 136

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
               E +H L +K G   +  V N+++ MY+    +  A  +F  M  + +++W  M+  
Sbjct: 137 LREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSG 196

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +       + +K+FR++ + RI  D V +++++     L +L+ G+ +   +V  GL+  
Sbjct: 197 YTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRN 256

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
             L+ S+I MY+KCG +D++R +F+++ ++ +V+W+A+ISGY Q    +EALN F +M Q
Sbjct: 257 NTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEM-Q 315

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
           +     + +T+VS+L +   L A E    +H    +       ++   LI  Y+KCG +D
Sbjct: 316 KGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYID 375

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            +  VF+EM F ++V +W  +I G   NG G+ AL  +  M E    P+  T++ +L+AC
Sbjct: 376 RSVEVFKEMSF-KNVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSAC 434

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN- 524
            HA L + G  +FN M  +  ++P  EHYGC+VD+L RAG L +A      +     PN 
Sbjct: 435 SHACLVDQGRHLFNSMRRDFDIEPRIEHYGCMVDILGRAGFLEEAYQFIDNM--PFPPNA 492

Query: 525 -IWRALLSGCVLH---------------------------------VGRFQDAEALRSGS 550
            +WR LL+ C  H                                 VGR +DA  +RS  
Sbjct: 493 VVWRTLLASCRAHKNIEMAEKSLEHITRLEPAHSGDYILLSNTYALVGRVEDAIRVRSLI 552

Query: 551 QKKGIIKIPGISFL 564
           ++K I KIPG S +
Sbjct: 553 KEKEIKKIPGCSLI 566



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 117/493 (23%), Positives = 233/493 (47%), Gaps = 30/493 (6%)

Query: 21  IKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVA 80
           I  A ++F+ I +    +++++I G +     + ++  F  M    +  + FT   VL A
Sbjct: 71  IDYALSIFNHIDKPESSAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKA 130

Query: 81  AAGLQNLELARSIHGLMVKFGLESD----------------------LFEGLKNPYLVSC 118
            + ++ L     +H L++K G +S+                      +F+G+    +V+ 
Sbjct: 131 CSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAW 190

Query: 119 NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIK 178
           N++++G+  N L+ + V LF       +  + VTM++V+  C  L +  + ELI    + 
Sbjct: 191 NSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVS 250

Query: 179 LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKI 238
            GL  + ++  S++DMY+    +D A ++F EM+ +DV++W+ M+  +   +   +AL +
Sbjct: 251 KGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNL 310

Query: 239 FREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSK 298
           F EM+K  +  + V +++++   A+LG  + GK +H  +    ++  + L   +I  Y+K
Sbjct: 311 FHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLIDFYAK 370

Query: 299 CGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVS 358
           CG +D S  VF +++ K++ +WTA+I G   NG  + AL  F  M +      D +T + 
Sbjct: 371 CGYIDRSVEVFKEMSFKNVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPND-VTFIG 429

Query: 359 ILTASGELAALEICLQLHGIAFEAGF---PRYRSVQNCLISSYSKCGNVDLAYIVFEEMG 415
           +L+A      ++    L   +    F   PR      C++    + G ++ AY   + M 
Sbjct: 430 VLSACSHACLVDQGRHLFN-SMRRDFDIEPRIEHY-GCMVDILGRAGFLEEAYQFIDNMP 487

Query: 416 FLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGL 475
           F  + V W T++     + + E A      +T   E   S  Y+ + N     G   D +
Sbjct: 488 FPPNAVVWRTLLASCRAHKNIEMAEKSLEHITRL-EPAHSGDYILLSNTYALVGRVEDAI 546

Query: 476 VIFNQMIEENKVK 488
            +   +I+E ++K
Sbjct: 547 RV-RSLIKEKEIK 558



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 144/285 (50%), Gaps = 22/285 (7%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+  Y   G+I  A ++FD +PE+++V+W+ ++ GY+ NG  ++ +K F  ++   +  +
Sbjct: 162 LIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFD 221

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFE 108
             TM+ VL+A   L NLE+   I   +V  GL  +                      LF+
Sbjct: 222 DVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFD 281

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            +    +V+ +A+++G+      ++A+ LF+  +   + PN VTM++V+  C  LG+   
Sbjct: 282 EMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYET 341

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
            + +H    K  + L V++   ++D Y+    +D ++++F+EM  K+V +WT ++    +
Sbjct: 342 GKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLAN 401

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQL 273
                 AL+ F  M ++ +  + V  + ++S  +    + +G+ L
Sbjct: 402 NGEGKMALEFFSSMLENDVKPNDVTFIGVLSACSHACLVDQGRHL 446



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 98/216 (45%), Gaps = 28/216 (12%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ L+  Y K G++  A  LFDE+ +++VV+WS +I GY+     ++++  F  M    +
Sbjct: 260 TTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNV 319

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIH--------GLMVKFGLE--------------SD 105
            PN  TMV VL + A L   E  + +H         L V  G +               +
Sbjct: 320 YPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVE 379

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F+ +    + +  A++ G  NN   + A+  F+    + + PN VT + V+  C    S
Sbjct: 380 VFKEMSFKNVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSAC----S 435

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDL 201
            A C +  G  +   +  D  +   + + Y C++D+
Sbjct: 436 HA-CLVDQGRHLFNSMRRDFDIEPRI-EHYGCMVDI 469


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  235 bits (599), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 158/534 (29%), Positives = 246/534 (46%), Gaps = 66/534 (12%)

Query: 100 FGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
           F     LF+ +  P L   N ++ G+      Q  V L+      G+ P+  T   + +G
Sbjct: 89  FQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKG 148

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
                +      +HG  +K GL  +V V+ +++ MY     LD A  +F      DVI+W
Sbjct: 149 FTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITW 208

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
             ++  +       ++ ++F  M   +++  TV L+ ++S  + L DL+ GK++H+ V  
Sbjct: 209 NMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKN 268

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSS-------------------------------RSV 308
             ++S L L N++I MY+ CG++DS+                               R+ 
Sbjct: 269 CKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNY 328

Query: 309 FNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAA 368
           F+++ EK  VSWTA+I GY+++   +EAL  F  M Q      D  T+VS+LTA   L A
Sbjct: 329 FDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNM-QATNVKPDEFTMVSVLTACAHLGA 387

Query: 369 LEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIY 428
           LE+   +              V+N LI  Y KCG+VD A  +F EM   RD  +W  +I 
Sbjct: 388 LELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMS-QRDKFTWTAMIV 446

Query: 429 GYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVK 488
           G  VNGHGE AL ++  M +   +PD  TY+ +L+AC H GL + G   F +M  ++ ++
Sbjct: 447 GLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIE 506

Query: 489 PSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH------------ 536
           P+  HYGC+VDLLARAG L +A  +   +       +W ALL+GC ++            
Sbjct: 507 PNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQ 566

Query: 537 ---------------------VGRFQDAEALRSGSQKKGIIKIPGISFLNSTSR 569
                                  R+ D   LR     KGI K PG S +    R
Sbjct: 567 ILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGCSLIEMNGR 620



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 130/531 (24%), Positives = 240/531 (45%), Gaps = 71/531 (13%)

Query: 19  GKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVL 78
           G  + A  LFDEIPE N+  W+ +I GYS   F +  +  +  M+  G+ P+ +T   + 
Sbjct: 87  GDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLF 146

Query: 79  VAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPYL--------------------V 116
                   LE  R +HG ++K GL+ ++F    L   YL                    +
Sbjct: 147 KGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVI 206

Query: 117 SCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLT 176
           + N I++ +     F+++  LF       ++P  VT++ V+  C  L      + +H   
Sbjct: 207 TWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYV 266

Query: 177 IKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDF------- 229
               +  ++ + N+++DMY+   ++D+A+ IFR M  +D+ISWT ++  F +        
Sbjct: 267 KNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVAR 326

Query: 230 ---------EYAG---------------DALKIFREMRKSRIICDTVALLNLISVNAILG 265
                    +Y                 +AL++FR M+ + +  D   ++++++  A LG
Sbjct: 327 NYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLG 386

Query: 266 DLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIIS 325
            L+ G+ +   +    ++++L + N++I MY KCGD+D + S+F +++++   +WTA+I 
Sbjct: 387 ALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIV 446

Query: 326 GYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTA--------SGELAALEICLQLHG 377
           G   NG   +AL+ F  M +      D IT + +L+A         G    L +  Q HG
Sbjct: 447 GLAVNGHGEKALDMFSNMLKASILP-DEITYIGVLSACTHTGLVDKGRKYFLRMTSQ-HG 504

Query: 378 IAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGE 437
           I  E     Y     CL+   ++ G +  AY V E M    + + W  ++ G  V    +
Sbjct: 505 I--EPNIAHY----GCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESD 558

Query: 438 TALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVK 488
            A  +  ++ E  E  + + Y+ + N        ND L    QM+ +  +K
Sbjct: 559 MAEMVVKQILEL-EPDNGAVYVLLCNIYAACKRWND-LRELRQMMMDKGIK 607



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/397 (23%), Positives = 182/397 (45%), Gaps = 60/397 (15%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + L+  Y   G++  A  +FD  P+ +V++W+++I  Y+  G  E+S + F  M    +L
Sbjct: 178 TALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVL 237

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------------- 106
           P + T+V VL A + L++L   + +H  +    +ES+L                      
Sbjct: 238 PTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGI 297

Query: 107 FEGLKNPYLVSCNAIVAGFIN-------------------------------NKLFQQAV 135
           F  + N  ++S   IV+GF N                               +  F++A+
Sbjct: 298 FRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEAL 357

Query: 136 LLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMY 195
            LF   + + + P+  TM++V+  C  LG+  L E I     +  +  D+ V N+++DMY
Sbjct: 358 ELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMY 417

Query: 196 SCLMDLDAAIQIFREMECKDVISWTRMM-GLFVDFEYAGDALKIFREMRKSRIICDTVAL 254
               D+D A  IFREM  +D  +WT M+ GL V+  +   AL +F  M K+ I+ D +  
Sbjct: 418 FKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVN-GHGEKALDMFSNMLKASILPDEITY 476

Query: 255 LNLISVNAILGDLKRGKQLHAQVV-LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT 313
           + ++S     G + +G++   ++    G++  +     ++ + ++ G L  +  V   + 
Sbjct: 477 IGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMP 536

Query: 314 EKS-LVSWTAIISG---YVQNGCAREALNQFIKMRQE 346
            K+  + W A+++G   Y ++  A   + Q +++  +
Sbjct: 537 IKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPD 573



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 51/77 (66%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L+  YFK G + +AE++F E+ +++  +W+ +I G ++NG  EK++  FS+M+
Sbjct: 406 DLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNML 465

Query: 64  LSGLLPNSFTMVGVLVA 80
            + +LP+  T +GVL A
Sbjct: 466 KASILPDEITYIGVLSA 482


>gi|297819542|ref|XP_002877654.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323492|gb|EFH53913.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1112

 Score =  235 bits (599), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 171/563 (30%), Positives = 282/563 (50%), Gaps = 38/563 (6%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIP---EKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           YNS  L+S Y KSG + +A+++F+ +    +++VVSWS ++  +  NG    ++K F   
Sbjct: 100 YNS--LISLYSKSGDLTKAKDVFETMGRFGKRDVVSWSAMMACFGNNGREFDAIKLFVEF 157

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG-LESDLFEG------------ 109
           +  GL+PN +    V+ A +    + + R I G ++K G  ESD+  G            
Sbjct: 158 LEMGLVPNDYCYTAVIRACSNSDFVGVGRVILGFLMKTGHFESDVCVGCSLIDMFVKGEN 217

Query: 110 -LKNPYLV-----SCNAIVAGFINNKLFQ-----QAVLLFNFFRGSGLVPNAVTMLTVIR 158
             +N Y V       N +    +  +  Q     +A+  F     SG   +  T+ +V  
Sbjct: 218 SFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFS 277

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYS-CLMD--LDAAIQIFREMECKD 215
            C  L + +L   +H   I+ GL  DV    S++DMY+ C  D  +D   ++F  M+   
Sbjct: 278 ACAELENLSLGRQLHSWAIRSGLADDVEC--SLVDMYAKCSADGSVDDCRKVFDRMQDHS 335

Query: 216 VISWTRMM-GLFVDFEYAGDALKIFREM-RKSRIICDTVALLNLISVNAILGDLKRGKQL 273
           V+SWT ++ G   +   A +A+ +F EM  +  +  +     +       + D + GKQ+
Sbjct: 336 VMSWTALITGYMQNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNVSDPRVGKQV 395

Query: 274 HAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA 333
                  GL S   +SNS+I+M+ KC  ++ +R+ F  ++EK+LVS+   + G  +N   
Sbjct: 396 LGHAFKRGLASNSSVSNSVISMFVKCDRMEDARTAFESLSEKNLVSYNTFLDGTCRNLDF 455

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC 393
             A  + +    E+   V + T  S+L+    + +L    Q+H    + G    + V N 
Sbjct: 456 EHAF-ELLSEIAERELGVSAFTFASLLSGVANVGSLRKGEQIHSQVLKLGLSCNQPVCNA 514

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           LIS YSKCG++D A  VF  M   R+V+SW ++I G+  +G  E  L  +++MT+ G  P
Sbjct: 515 LISMYSKCGSIDTASRVFSLMDN-RNVISWTSMITGFAKHGFAERVLETFNQMTKEGVKP 573

Query: 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL 513
           +  TY++IL+AC H GL ++G   FN M E++K+KP  EHY C+VDLL RAG L+DA   
Sbjct: 574 NEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEF 633

Query: 514 AGKLLEGMGPNIWRALLSGCVLH 536
              +       +WR  L  C +H
Sbjct: 634 INTMPFQADVLVWRTFLGACRVH 656



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 127/498 (25%), Positives = 242/498 (48%), Gaps = 36/498 (7%)

Query: 21  IKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVA 80
            + A  +FD++ E NVV+W+++I      GF  ++++ F  M+LSG   + FT+  V  A
Sbjct: 219 FENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSA 278

Query: 81  AAGLQNLELARSIHGLMVKFGLESDL-----------------------FEGLKNPYLVS 117
            A L+NL L R +H   ++ GL  D+                       F+ +++  ++S
Sbjct: 279 CAELENLSLGRQLHSWAIRSGLADDVECSLVDMYAKCSADGSVDDCRKVFDRMQDHSVMS 338

Query: 118 CNAIVAGFINN-KLFQQAVLLFNFFRGSGLV-PNAVTMLTVIRGCVALGSRALCELIHGL 175
             A++ G++ N  L  +A+ LF+     G V PN  T  +  + C  +    + + + G 
Sbjct: 339 WTALITGYMQNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNVSDPRVGKQVLGH 398

Query: 176 TIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG---LFVDFEYA 232
             K GL  + SV+NSV+ M+     ++ A   F  +  K+++S+   +      +DFE+A
Sbjct: 399 AFKRGLASNSSVSNSVISMFVKCDRMEDARTAFESLSEKNLVSYNTFLDGTCRNLDFEHA 458

Query: 233 GDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSI 292
               ++  E+ +  +        +L+S  A +G L++G+Q+H+QV+  GL     + N++
Sbjct: 459 ---FELLSEIAERELGVSAFTFASLLSGVANVGSLRKGEQIHSQVLKLGLSCNQPVCNAL 515

Query: 293 IAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVD 352
           I+MYSKCG +D++  VF+ +  ++++SWT++I+G+ ++G A   L  F +M +E     +
Sbjct: 516 ISMYSKCGSIDTASRVFSLMDNRNVISWTSMITGFAKHGFAERVLETFNQMTKEGVKP-N 574

Query: 353 SITLVSILTASGELAALEICLQLHGIAFEAGF--PRYRSVQNCLISSYSKCGNVDLAYIV 410
            +T V+IL+A   +  +    +     +E     P+      C++    + G +  A+  
Sbjct: 575 EVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYA-CMVDLLCRAGLLTDAFEF 633

Query: 411 FEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGL 470
              M F  DV+ W T +    V+ + E       K+ E  +  + + Y+ + N    AG 
Sbjct: 634 INTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILEF-DPNEPAAYIQLSNIYASAGK 692

Query: 471 TNDGLVIFNQMIEENKVK 488
             +   +  +M E N VK
Sbjct: 693 WEESTEMRRKMKERNLVK 710



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 109/396 (27%), Positives = 187/396 (47%), Gaps = 38/396 (9%)

Query: 97  MVKFGLESDLFEGLKNPYLVS-----CNAIVAGFINNKLFQQAVLLFNFFRGSGLVP-NA 150
           M+ F   S     +K+P  +S      + ++   +N    + AV   +     G+ P ++
Sbjct: 3   MISFSFPSPAKLPIKSPPSISNRINVADRLILRHLNAGDLRGAVSALDLMARDGIRPMDS 62

Query: 151 VTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFRE 210
           VT  ++++ C+      L +L+H   I+  +  D  + NS++ +YS   DL  A  +F  
Sbjct: 63  VTFSSLLKSCIRARHFRLGKLVHARLIEFEIEPDSVLYNSLISLYSKSGDLTKAKDVFET 122

Query: 211 M---ECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISV------- 260
           M     +DV+SW+ MM  F +     DA+K+F E  +  ++ +      +I         
Sbjct: 123 MGRFGKRDVVSWSAMMACFGNNGREFDAIKLFVEFLEMGLVPNDYCYTAVIRACSNSDFV 182

Query: 261 ---NAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGD-LDSSRSVFNQITEKS 316
                ILG L +     + V +G          S+I M+ K  +  +++  VF++++E +
Sbjct: 183 GVGRVILGFLMKTGHFESDVCVGC---------SLIDMFVKGENSFENAYKVFDKMSELN 233

Query: 317 LVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLH 376
           +V+WT +I+  +Q G  REA+  F+ M     +S D  TL S+ +A  EL  L +  QLH
Sbjct: 234 VVTWTLMITRCMQMGFPREAIRFFLDMVLSGFES-DKFTLSSVFSACAELENLSLGRQLH 292

Query: 377 GIAFEAGFPRYRSVQNCLISSYSKC---GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVN 433
             A  +G      V+  L+  Y+KC   G+VD    VF+ M     V+SW  +I GY  N
Sbjct: 293 SWAIRSGLA--DDVECSLVDMYAKCSADGSVDDCRKVFDRMQ-DHSVMSWTALITGYMQN 349

Query: 434 GHGET-ALALYHKMTETGEV-PDSSTYLSILNACGH 467
            +  T A+ L+ +M   G V P+  T+ S   ACG+
Sbjct: 350 CNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGN 385


>gi|359478617|ref|XP_003632146.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 628

 Score =  235 bits (599), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 145/506 (28%), Positives = 268/506 (52%), Gaps = 27/506 (5%)

Query: 56  MKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------- 105
           +K  + +   G  P +  +  ++ + A   ++ +   +H  ++K G +S+          
Sbjct: 64  LKLLAQLQQHGSAPTAHILNRMVSSCAKSGSVFVGIQLHSTIIKVGFDSNVYICSALVDM 123

Query: 106 ------------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTM 153
                       LF+ + +  +V+ N++++G+++    + A+ LF      G+ P   ++
Sbjct: 124 YGKCGAVSSAQRLFDEMPHRNVVTWNSLISGYLHVGCPEIAIELFLEMVKVGIDPTPFSV 183

Query: 154 LTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC 213
             V+ GC  +    L   +HGL++K G   ++ V   ++D+YS   ++DA+  +F  M  
Sbjct: 184 SAVLVGCWRMEDTKLGIQVHGLSMKCGFCYNIVVGTCLIDLYSKGWNIDASRLMFDLMPE 243

Query: 214 KDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQL 273
           +++I+WT M+  +   +    A+ + R+M++  I  + V    L+S  +   DL   KQ+
Sbjct: 244 RNIITWTSMVAGYAHCQQPVAAMVLVRDMQRLGIRLNYVTYNCLLSSFSSSNDLDHCKQV 303

Query: 274 HAQVVLGGLQSELRLSNSIIAMYSKCGD--LDSSRSVFNQITEKSLVSWTAIISGYVQNG 331
           H +++  GL+S   L  +++ +YS+C    L+    V + +T    +SW A+I G    G
Sbjct: 304 HCRIIREGLESNSYLEVTLVTVYSECSSSSLEDFNKVCSGVTRWDQISWNAVIGGLSNLG 363

Query: 332 CAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ 391
               AL  F KMRQ   D +D  T  S+L A G ++ L+   Q+H +  +AG+    +VQ
Sbjct: 364 NGEAALKCFSKMRQAGID-MDLFTFTSVLRAIGMISTLDEGKQIHALVLKAGYGSNLNVQ 422

Query: 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE 451
           N L+S Y++CG+++ A  VF  M    DV+SWN+++ G   +G+G  A+ L+ +M  +G 
Sbjct: 423 NGLVSMYARCGSINDAKRVFSLMD-RHDVISWNSLLSGCAYHGYGREAVELFEQMRRSGV 481

Query: 452 VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVK-PSQEHYGCVVDLLARAGCLSDA 510
            PD++T+L +L+AC H GL + GL  F+ M  +  ++ P+ EHY  +VDL +RAG LS+A
Sbjct: 482 KPDNTTFLVVLSACRHVGLLDKGLEYFDLMRNDYSLESPTTEHYSSMVDLFSRAGYLSEA 541

Query: 511 SGLAGKLLEGMGPNIWRALLSGCVLH 536
                 +    GP++++ALLS C +H
Sbjct: 542 EDFINTMPIEPGPSVYKALLSACQVH 567



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 99/389 (25%), Positives = 192/389 (49%), Gaps = 25/389 (6%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y  S L+  Y K G +  A+ LFDE+P +NVV+W+ +I GY   G  E +++ F  M+  
Sbjct: 115 YICSALVDMYGKCGAVSSAQRLFDEMPHRNVVTWNSLISGYLHVGCPEIAIELFLEMVKV 174

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-------------------- 105
           G+ P  F++  VLV    +++ +L   +HGL +K G   +                    
Sbjct: 175 GIDPTPFSVSAVLVGCWRMEDTKLGIQVHGLSMKCGFCYNIVVGTCLIDLYSKGWNIDAS 234

Query: 106 --LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
             +F+ +    +++  ++VAG+ + +    A++L    +  G+  N VT   ++    + 
Sbjct: 235 RLMFDLMPERNIITWTSMVAGYAHCQQPVAAMVLVRDMQRLGIRLNYVTYNCLLSSFSSS 294

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYS--CLMDLDAAIQIFREMECKDVISWTR 221
                C+ +H   I+ GL  +  +  +++ +YS      L+   ++   +   D ISW  
Sbjct: 295 NDLDHCKQVHCRIIREGLESNSYLEVTLVTVYSECSSSSLEDFNKVCSGVTRWDQISWNA 354

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++G   +      ALK F +MR++ I  D     +++    ++  L  GKQ+HA V+  G
Sbjct: 355 VIGGLSNLGNGEAALKCFSKMRQAGIDMDLFTFTSVLRAIGMISTLDEGKQIHALVLKAG 414

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
             S L + N +++MY++CG ++ ++ VF+ +    ++SW +++SG   +G  REA+  F 
Sbjct: 415 YGSNLNVQNGLVSMYARCGSINDAKRVFSLMDRHDVISWNSLLSGCAYHGYGREAVELFE 474

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALE 370
           +MR+      D+ T + +L+A   +  L+
Sbjct: 475 QMRRSGVKP-DNTTFLVVLSACRHVGLLD 502



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 117/456 (25%), Positives = 215/456 (47%), Gaps = 20/456 (4%)

Query: 117 SCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLT 176
           SCN+ +A   + K     + L    +  G  P A  +  ++  C   GS  +   +H   
Sbjct: 46  SCNSHIACDTDEKQSSVDLKLLAQLQQHGSAPTAHILNRMVSSCAKSGSVFVGIQLHSTI 105

Query: 177 IKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDAL 236
           IK+G   +V + ++++DMY     + +A ++F EM  ++V++W  ++  ++       A+
Sbjct: 106 IKVGFDSNVYICSALVDMYGKCGAVSSAQRLFDEMPHRNVVTWNSLISGYLHVGCPEIAI 165

Query: 237 KIFREMRKSRIICDTVALLNLISVNAIL------GDLKRGKQLHAQVVLGGLQSELRLSN 290
           ++F EM K  I  D        SV+A+L       D K G Q+H   +  G    + +  
Sbjct: 166 ELFLEMVKVGI--DPTPF----SVSAVLVGCWRMEDTKLGIQVHGLSMKCGFCYNIVVGT 219

Query: 291 SIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE-ALNQFIKMRQEKTD 349
            +I +YSK  ++D+SR +F+ + E+++++WT++++GY    C +  A    ++  Q    
Sbjct: 220 CLIDLYSKGWNIDASRLMFDLMPERNIITWTSMVAGYAH--CQQPVAAMVLVRDMQRLGI 277

Query: 350 SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYI 409
            ++ +T   +L++      L+ C Q+H      G      ++  L++ YS+C +  L   
Sbjct: 278 RLNYVTYNCLLSSFSSSNDLDHCKQVHCRIIREGLESNSYLEVTLVTVYSECSSSSLEDF 337

Query: 410 VFEEMGFLR-DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
                G  R D +SWN +I G    G+GE AL  + KM + G   D  T+ S+L A G  
Sbjct: 338 NKVCSGVTRWDQISWNAVIGGLSNLGNGEAALKCFSKMRQAGIDMDLFTFTSVLRAIGMI 397

Query: 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRA 528
              ++G  I   +++           G +V + AR G ++DA  +   L++      W +
Sbjct: 398 STLDEGKQIHALVLKAGYGSNLNVQNG-LVSMYARCGSINDAKRVF-SLMDRHDVISWNS 455

Query: 529 LLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFL 564
           LLSGC  H G  ++A  L    ++ G +K    +FL
Sbjct: 456 LLSGCAYH-GYGREAVELFEQMRRSG-VKPDNTTFL 489



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 132/284 (46%), Gaps = 24/284 (8%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+  Y K   I  +  +FD +PE+N+++W+ ++ GY+       +M     M   G+  N
Sbjct: 221 LIDLYSKGWNIDASRLMFDLMPERNIITWTSMVAGYAHCQQPVAAMVLVRDMQRLGIRLN 280

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF----------------------- 107
             T   +L + +   +L+  + +H  +++ GLES+ +                       
Sbjct: 281 YVTYNCLLSSFSSSNDLDHCKQVHCRIIREGLESNSYLEVTLVTVYSECSSSSLEDFNKV 340

Query: 108 -EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
             G+     +S NA++ G  N    + A+  F+  R +G+  +  T  +V+R    + + 
Sbjct: 341 CSGVTRWDQISWNAVIGGLSNLGNGEAALKCFSKMRQAGIDMDLFTFTSVLRAIGMISTL 400

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
              + IH L +K G   +++V N ++ MY+    ++ A ++F  M+  DVISW  ++   
Sbjct: 401 DEGKQIHALVLKAGYGSNLNVQNGLVSMYARCGSINDAKRVFSLMDRHDVISWNSLLSGC 460

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG 270
               Y  +A+++F +MR+S +  D    L ++S    +G L +G
Sbjct: 461 AYHGYGREAVELFEQMRRSGVKPDNTTFLVVLSACRHVGLLDKG 504


>gi|358343602|ref|XP_003635889.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|358344096|ref|XP_003636129.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355501824|gb|AES83027.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355502064|gb|AES83267.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 662

 Score =  235 bits (599), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 150/442 (33%), Positives = 244/442 (55%), Gaps = 9/442 (2%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           LF+ + N ++V+ N++++  ++    ++A+ L++     G++P+A T   + +    +G 
Sbjct: 57  LFDEMPNRHIVTWNSMISSHVSRGKTKEAIELYSNMLFEGVLPDAYTFSAIFKAFSEMGV 116

Query: 166 RALCELIHGLTIKLGL-ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
               +  HGL + LG  + D  V   ++DMY+    +  A  +F  +  KDV+ +T ++ 
Sbjct: 117 SREGQKAHGLAVVLGFEVSDGFVATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALIV 176

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            +      G+AL++F +M  SRI  +   L +++     LGDL  GK +H  VV  GL+S
Sbjct: 177 GYNQHGLDGEALEVFEDMVGSRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKYGLES 236

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
            +    S++ MYSKC  ++ S  VFN +   S V+WT+ I G VQNG    AL+ F +M 
Sbjct: 237 VVASQTSLLTMYSKCNMVEDSIKVFNSLAYASHVTWTSFIVGLVQNGREEVALSMFREMM 296

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
           +    S +  TL SIL A   LA LE   Q+H +  + G    + V   LI  Y KCGNV
Sbjct: 297 RCSI-SPNHFTLSSILHACSSLAMLEAGEQIHAVTVKLGVDGNKFVDAALIHLYGKCGNV 355

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           + A  VF+ +  L D+VS NT+IY Y  NG G  AL L+ ++ + G  P+  T++SIL A
Sbjct: 356 EKARSVFDSLTEL-DIVSINTMIYAYAQNGFGHEALELFERLKKLGLEPNVVTFISILLA 414

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C +AGL  +G  IF+ +   + ++ +++HY C++DLL RA    +A+ L   + EG  P+
Sbjct: 415 CNNAGLVEEGCQIFSLIRNNHSIELTRDHYTCMIDLLGRAKRFEEATML---IEEGKNPD 471

Query: 525 I--WRALLSGCVLHVGRFQDAE 544
           +  WR LL+ C +H G  + AE
Sbjct: 472 VIQWRTLLNACKIH-GEVEMAE 492



 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 134/485 (27%), Positives = 236/485 (48%), Gaps = 29/485 (5%)

Query: 10  KLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLP 69
           KL+  Y K   I EA  LFDE+P +++V+W+ +I  +   G  +++++ +S+M+  G+LP
Sbjct: 40  KLIDGYIKCSVITEARKLFDEMPNRHIVTWNSMISSHVSRGKTKEAIELYSNMLFEGVLP 99

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE-SD----------------------L 106
           +++T   +  A + +      +  HGL V  G E SD                      +
Sbjct: 100 DAYTFSAIFKAFSEMGVSREGQKAHGLAVVLGFEVSDGFVATGIVDMYAKFGKMKDARFV 159

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           F+ + +  +V   A++ G+  + L  +A+ +F    GS + PN  T+ +V+  C  LG  
Sbjct: 160 FDRVLDKDVVLFTALIVGYNQHGLDGEALEVFEDMVGSRIKPNEYTLASVLVSCGNLGDL 219

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
              +LIHGL +K GL   V+   S+L MYS    ++ +I++F  +     ++WT  +   
Sbjct: 220 VNGKLIHGLVVKYGLESVVASQTSLLTMYSKCNMVEDSIKVFNSLAYASHVTWTSFIVGL 279

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
           V       AL +FREM +  I  +   L +++   + L  L+ G+Q+HA  V  G+    
Sbjct: 280 VQNGREEVALSMFREMMRCSISPNHFTLSSILHACSSLAMLEAGEQIHAVTVKLGVDGNK 339

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            +  ++I +Y KCG+++ +RSVF+ +TE  +VS   +I  Y QNG   EAL  F ++++ 
Sbjct: 340 FVDAALIHLYGKCGNVEKARSVFDSLTELDIVSINTMIYAYAQNGFGHEALELFERLKKL 399

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHG-IAFEAGFPRYRSVQNCLISSYSKCGNVD 405
             +  + +T +SIL A      +E   Q+   I         R    C+I    +    +
Sbjct: 400 GLEP-NVVTFISILLACNNAGLVEEGCQIFSLIRNNHSIELTRDHYTCMIDLLGRAKRFE 458

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNA 464
            A ++ EE G   DV+ W T++    ++G  E A     KM +  + P D  T++ + N 
Sbjct: 459 EATMLIEE-GKNPDVIQWRTLLNACKIHGEVEMAEKFMKKMLD--QAPRDGGTHILLTNI 515

Query: 465 CGHAG 469
              AG
Sbjct: 516 YASAG 520



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 85/388 (21%), Positives = 185/388 (47%), Gaps = 28/388 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + ++ ++  Y K GK+K+A  +FD + +K+VV ++ +I GY+ +G   ++++ F  M+
Sbjct: 136 DGFVATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALIVGYNQHGLDGEALEVFEDMV 195

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES------------------- 104
            S + PN +T+  VLV+   L +L   + IHGL+VK+GLES                   
Sbjct: 196 GSRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKYGLESVVASQTSLLTMYSKCNMVE 255

Query: 105 ---DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +F  L     V+  + + G + N   + A+ +F       + PN  T+ +++  C 
Sbjct: 256 DSIKVFNSLAYASHVTWTSFIVGLVQNGREEVALSMFREMMRCSISPNHFTLSSILHACS 315

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
           +L      E IH +T+KLG+  +  V+ +++ +Y    +++ A  +F  +   D++S   
Sbjct: 316 SLAMLEAGEQIHAVTVKLGVDGNKFVDAALIHLYGKCGNVEKARSVFDSLTELDIVSINT 375

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+  +    +  +AL++F  ++K  +  + V  ++++      G ++ G Q+ + ++   
Sbjct: 376 MIYAYAQNGFGHEALELFERLKKLGLEPNVVTFISILLACNNAGLVEEGCQIFS-LIRNN 434

Query: 282 LQSELRLSN--SIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
              EL   +   +I +  +    + +  +  +     ++ W  +++    +G   E   +
Sbjct: 435 HSIELTRDHYTCMIDLLGRAKRFEEATMLIEEGKNPDVIQWRTLLNACKIHG-EVEMAEK 493

Query: 340 FIK--MRQEKTDSVDSITLVSILTASGE 365
           F+K  + Q   D    I L +I  ++G+
Sbjct: 494 FMKKMLDQAPRDGGTHILLTNIYASAGK 521



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 99/208 (47%), Gaps = 5/208 (2%)

Query: 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
           K LH  ++  G        + +I  Y KC  +  +R +F+++  + +V+W ++IS +V  
Sbjct: 21  KSLHTHILKSGSLFSF-FGHKLIDGYIKCSVITEARKLFDEMPNRHIVTWNSMISSHVSR 79

Query: 331 GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS- 389
           G  +EA+  +  M  E     D+ T  +I  A  E+       + HG+A   GF      
Sbjct: 80  GKTKEAIELYSNMLFEGVLP-DAYTFSAIFKAFSEMGVSREGQKAHGLAVVLGFEVSDGF 138

Query: 390 VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
           V   ++  Y+K G +  A  VF+ +   +DVV +  +I GY  +G    AL ++  M  +
Sbjct: 139 VATGIVDMYAKFGKMKDARFVFDRV-LDKDVVLFTALIVGYNQHGLDGEALEVFEDMVGS 197

Query: 450 GEVPDSSTYLSILNACGHAG-LTNDGLV 476
              P+  T  S+L +CG+ G L N  L+
Sbjct: 198 RIKPNEYTLASVLVSCGNLGDLVNGKLI 225


>gi|297842209|ref|XP_002888986.1| hypothetical protein ARALYDRAFT_476599 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297334827|gb|EFH65245.1| hypothetical protein ARALYDRAFT_476599 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 717

 Score =  235 bits (599), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 159/558 (28%), Positives = 270/558 (48%), Gaps = 32/558 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + ++  Y K G + EA  +F  I   +VVSW++++ GY+ +     +++ F  M 
Sbjct: 106 DVFVCTSIVDLYAKCGHMAEAREVFSRISNPSVVSWTVMLSGYTKSNDAFSALEIFREMR 165

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG---------------------- 101
            SG+  NS T+  V+ A      +  A  +H  + K G                      
Sbjct: 166 HSGVEINSCTVTSVISACGRPSMVCEASQVHAWVFKSGFYLDTSVAAALISMNSKSGDIN 225

Query: 102 LESDLFEGLKNPYLVS-CNAIVAGFINNKLFQQAVLLFNFFRGSGLVPN--AVTMLTVIR 158
           L   +FE L +    +  N +V  F  NK   +A+ LF      GL P+  +V  L  + 
Sbjct: 226 LSERVFEDLDDIRRQNIVNVMVTSFSQNKKPGKAIRLFTRMLQEGLNPDEFSVCSLLSVL 285

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C+ LG +     +H  T+K GLILD++V +S+  MYS    L+ +  +F+E+  KD   
Sbjct: 286 DCLNLGKQ-----VHSYTLKSGLILDLTVGSSLFTMYSKCGSLEESYSLFQEIPFKDNAC 340

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           W  M+  F ++ Y  +A+ +F EM       D   L  +++V + L  L R K++H   +
Sbjct: 341 WASMISGFNEYGYLREAIGLFSEMLDEGTSPDESTLAAVLTVCSSLPSLPRSKEIHGYTL 400

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
             G+   + L ++++  YSKCG L  +R V++++ E   VS +++ISGY Q+G  ++   
Sbjct: 401 RAGIDRGMPLGSALVNTYSKCGSLKLARKVYDRLPEMDPVSCSSLISGYSQHGLVQDGFL 460

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
            F  M      S+DS  + SIL A+      E+  Q+H    + G     SV + L++ Y
Sbjct: 461 LFRDMVMSGF-SMDSYAISSILKAAVLSEESELGAQVHAYITKIGLCTEPSVGSSLLTMY 519

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
           SK G+++     F ++    D+++W  +I  Y  +G    AL +Y  M E G  PD  T+
Sbjct: 520 SKFGSIEDCCKAFSQING-PDLIAWTALIASYAQHGKANEALQVYCLMKEKGFKPDKVTF 578

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
           + +L+AC H GL  +G    N M+++  ++P   HY C+VD L R+G L +A        
Sbjct: 579 VGVLSACSHGGLVEEGYFHLNSMVKDYGIEPENRHYVCMVDALGRSGRLREAENFINTRP 638

Query: 519 EGMGPNIWRALLSGCVLH 536
                 +W  LL+ C ++
Sbjct: 639 IKPDALVWGTLLAACKIY 656



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 136/481 (28%), Positives = 237/481 (49%), Gaps = 33/481 (6%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           S L+  + K+ + ++A  +F +    NV  W+ +I G   N  +      F H M +G  
Sbjct: 11  SSLIDAFSKNLRFEDAYKVFRDTLSANVYCWNTIIAGALRNQNYGAVFDLF-HEMCNGFQ 69

Query: 69  -PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES---------------------DL 106
            P+S+T   VL A A L+ L   + +   ++K G E                      ++
Sbjct: 70  KPDSYTYSSVLAACASLEELRFGKVVQARVIKCGAEDVFVCTSIVDLYAKCGHMAEAREV 129

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           F  + NP +VS   +++G+  +     A+ +F   R SG+  N+ T+ +VI  C      
Sbjct: 130 FSRISNPSVVSWTVMLSGYTKSNDAFSALEIFREMRHSGVEINSCTVTSVISACGRPSMV 189

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME---CKDVISWTRMM 223
                +H    K G  LD SV  +++ M S   D++ + ++F +++    +++++   M+
Sbjct: 190 CEASQVHAWVFKSGFYLDTSVAAALISMNSKSGDINLSERVFEDLDDIRRQNIVN--VMV 247

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
             F   +  G A+++F  M +  +  D  ++ +L+SV   L  L  GKQ+H+  +  GL 
Sbjct: 248 TSFSQNKKPGKAIRLFTRMLQEGLNPDEFSVCSLLSV---LDCLNLGKQVHSYTLKSGLI 304

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
            +L + +S+  MYSKCG L+ S S+F +I  K    W ++ISG+ + G  REA+  F +M
Sbjct: 305 LDLTVGSSLFTMYSKCGSLEESYSLFQEIPFKDNACWASMISGFNEYGYLREAIGLFSEM 364

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
             E T S D  TL ++LT    L +L    ++HG    AG  R   + + L+++YSKCG+
Sbjct: 365 LDEGT-SPDESTLAAVLTVCSSLPSLPRSKEIHGYTLRAGIDRGMPLGSALVNTYSKCGS 423

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           + LA  V++ +  + D VS +++I GY  +G  +    L+  M  +G   DS    SIL 
Sbjct: 424 LKLARKVYDRLPEM-DPVSCSSLISGYSQHGLVQDGFLLFRDMVMSGFSMDSYAISSILK 482

Query: 464 A 464
           A
Sbjct: 483 A 483



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 122/493 (24%), Positives = 228/493 (46%), Gaps = 33/493 (6%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLF---DEIPEKNVVSWSIVIHGYSINGFHEKSMKAF 59
           +D   ++ L+S   KSG I  +E +F   D+I  +N+V+  +++  +S N    K+++ F
Sbjct: 206 LDTSVAAALISMNSKSGDINLSERVFEDLDDIRRQNIVN--VMVTSFSQNKKPGKAIRLF 263

Query: 60  SHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG---------- 109
           + M+  GL P+ F++  +L     L  L L + +H   +K GL  DL  G          
Sbjct: 264 TRMLQEGLNPDEFSVCSLLSV---LDCLNLGKQVHSYTLKSGLILDLTVGSSLFTMYSKC 320

Query: 110 --LKNPYLV---------SCNA-IVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
             L+  Y +         +C A +++GF      ++A+ LF+     G  P+  T+  V+
Sbjct: 321 GSLEESYSLFQEIPFKDNACWASMISGFNEYGYLREAIGLFSEMLDEGTSPDESTLAAVL 380

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
             C +L S    + IHG T++ G+   + + +++++ YS    L  A +++  +   D +
Sbjct: 381 TVCSSLPSLPRSKEIHGYTLRAGIDRGMPLGSALVNTYSKCGSLKLARKVYDRLPEMDPV 440

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           S + ++  +       D   +FR+M  S    D+ A+ +++    +  + + G Q+HA +
Sbjct: 441 SCSSLISGYSQHGLVQDGFLLFRDMVMSGFSMDSYAISSILKAAVLSEESELGAQVHAYI 500

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
              GL +E  + +S++ MYSK G ++     F+QI    L++WTA+I+ Y Q+G A EAL
Sbjct: 501 TKIGLCTEPSVGSSLLTMYSKFGSIEDCCKAFSQINGPDLIAWTALIASYAQHGKANEAL 560

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEI-CLQLHGIAFEAGFPRYRSVQNCLIS 396
             +  M+ EK    D +T V +L+A      +E     L+ +  + G         C++ 
Sbjct: 561 QVYCLMK-EKGFKPDKVTFVGVLSACSHGGLVEEGYFHLNSMVKDYGIEPENRHYVCMVD 619

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
           +  + G +  A           D + W T++    + G  E       K  E  E  D+ 
Sbjct: 620 ALGRSGRLREAENFINTRPIKPDALVWGTLLAACKIYGDVELGKLAAKKAIEL-EPSDAG 678

Query: 457 TYLSILNACGHAG 469
            Y+S+ N     G
Sbjct: 679 AYVSLSNILAEVG 691



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 153/285 (53%), Gaps = 2/285 (0%)

Query: 179 LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKI 238
           +G      V +S++D +S  +  + A ++FR+    +V  W  ++   +  +  G    +
Sbjct: 1   MGYFFYEVVQSSLIDAFSKNLRFEDAYKVFRDTLSANVYCWNTIIAGALRNQNYGAVFDL 60

Query: 239 FREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSK 298
           F EM       D+    ++++  A L +L+ GK + A+V+  G + ++ +  SI+ +Y+K
Sbjct: 61  FHEMCNGFQKPDSYTYSSVLAACASLEELRFGKVVQARVIKCGAE-DVFVCTSIVDLYAK 119

Query: 299 CGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVS 358
           CG +  +R VF++I+  S+VSWT ++SGY ++  A  AL  F +MR    + ++S T+ S
Sbjct: 120 CGHMAEAREVFSRISNPSVVSWTVMLSGYTKSNDAFSALEIFREMRHSGVE-INSCTVTS 178

Query: 359 ILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLR 418
           +++A G  + +    Q+H   F++GF    SV   LIS  SK G+++L+  VFE++  +R
Sbjct: 179 VISACGRPSMVCEASQVHAWVFKSGFYLDTSVAAALISMNSKSGDINLSERVFEDLDDIR 238

Query: 419 DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
                N ++  +  N     A+ L+ +M + G  PD  +  S+L+
Sbjct: 239 RQNIVNVMVTSFSQNKKPGKAIRLFTRMLQEGLNPDEFSVCSLLS 283



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 82/170 (48%), Gaps = 14/170 (8%)

Query: 383 GFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALAL 442
           G+  Y  VQ+ LI ++SK    + AY VF +     +V  WNTII G   N +      L
Sbjct: 2   GYFFYEVVQSSLIDAFSKNLRFEDAYKVFRDT-LSANVYCWNTIIAGALRNQNYGAVFDL 60

Query: 443 YHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEH-YGC--VVD 499
           +H+M    + PDS TY S+L AC  A L     + F ++++   +K   E  + C  +VD
Sbjct: 61  FHEMCNGFQKPDSYTYSSVLAAC--ASLEE---LRFGKVVQARVIKCGAEDVFVCTSIVD 115

Query: 500 LLARAGCLSDASGLAGKLLEGMGPNI--WRALLSGCVLHVGRFQDAEALR 547
           L A+ G +++A  +  ++     P++  W  +LSG       F   E  R
Sbjct: 116 LYAKCGHMAEAREVFSRI---SNPSVVSWTVMLSGYTKSNDAFSALEIFR 162



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 81/179 (45%), Gaps = 13/179 (7%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C +P   S LL+ Y K G I++    F +I   ++++W+ +I  Y+ +G   ++++ +  
Sbjct: 506 CTEPSVGSSLLTMYSKFGSIEDCCKAFSQINGPDLIAWTALIASYAQHGKANEALQVYCL 565

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK-FGLESDLFEGLKNPYLVSCNA 120
           M   G  P+  T VGVL A +    +E        MVK +G+E +      N + V    
Sbjct: 566 MKEKGFKPDKVTFVGVLSACSHGGLVEEGYFHLNSMVKDYGIEPE------NRHYV---C 616

Query: 121 IVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKL 179
           +V     +   ++A    NF     + P+A+   T++  C   G   L +L     I+L
Sbjct: 617 MVDALGRSGRLREAE---NFINTRPIKPDALVWGTLLAACKIYGDVELGKLAAKKAIEL 672



 Score = 42.7 bits (99), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 36/182 (19%), Positives = 67/182 (36%), Gaps = 53/182 (29%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P +DP + S L+S                               GYS +G  +     F 
Sbjct: 435 PEMDPVSCSSLIS-------------------------------GYSQHGLVQDGFLLFR 463

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--------------- 105
            M++SG   +S+ +  +L AA   +  EL   +H  + K GL ++               
Sbjct: 464 DMVMSGFSMDSYAISSILKAAVLSEESELGAQVHAYITKIGLCTEPSVGSSLLTMYSKFG 523

Query: 106 -------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                   F  +  P L++  A++A +  +    +A+ ++   +  G  P+ VT + V+ 
Sbjct: 524 SIEDCCKAFSQINGPDLIAWTALIASYAQHGKANEALQVYCLMKEKGFKPDKVTFVGVLS 583

Query: 159 GC 160
            C
Sbjct: 584 AC 585


>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 685

 Score =  235 bits (599), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 160/519 (30%), Positives = 259/519 (49%), Gaps = 47/519 (9%)

Query: 84  LQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRG 143
           L NL L R++      +     LF   + P +   N ++ GF+NN LF + + LF   R 
Sbjct: 47  LVNLLLKRTLFFRQTHYSFL--LFSHTQFPNIFLYNTLINGFVNNHLFHETLDLFLSIRK 104

Query: 144 SGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDA 203
            GL  +  T   V++ C    +R L   +H L +K G   DV+   S+L +YS    L+ 
Sbjct: 105 HGLNLHGFTFPLVLKACTRASNRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLND 164

Query: 204 AIQIFREMECKDVISWTRMMGLFVDFEYAG---DALKIFREMRKSRIICDTVALLNLISV 260
           A ++F E+  + V++WT    LF  +  AG   +A+ +F++M +  +  D+  ++ ++S 
Sbjct: 165 AHKVFEEIPERSVVTWT---ALFSGYTTAGKHREAIDLFKKMVEMGVRPDSYFIVQVLSA 221

Query: 261 NAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSW 320
              +GDL  G+ +   +    +Q    +  +++ +Y+KCG ++ +RSVF+ + EK +V+W
Sbjct: 222 CVHVGDLDSGEWIVKHMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMGEKDIVTW 281

Query: 321 TAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAF 380
           + +I GY  N   +E +  F++M QE     D  ++V  L++   L AL++      +  
Sbjct: 282 STMIQGYASNSFPKEGIEFFLQMLQENLKP-DQFSIVGFLSSCASLGALDLGEWGISLID 340

Query: 381 EAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETAL 440
              F     + N LI  Y+KCG +   + VF+EM   +D+V  N  I G   NGH + + 
Sbjct: 341 RHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMK-EKDIVIMNAAISGLAKNGHVKLSF 399

Query: 441 ALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDL 500
           A++ +  + G  PD ST+L +L  C HAGL  DGL  FN +     +K + EHYGC+VDL
Sbjct: 400 AVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDL 459

Query: 501 LARAGCLSDASGLAGKLLEGMGPN--IWRALLSGCVL----------------------- 535
             RAG L DA  L   +   M PN  +W ALLSGC L                       
Sbjct: 460 WGRAGMLDDAYRLICDM--PMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAG 517

Query: 536 -HV---------GRFQDAEALRSGSQKKGIIKIPGISFL 564
            +V         GR+ +A  +R    +KG+ KIPG S++
Sbjct: 518 NYVQLSNIYSVSGRWDEAAEVRDMMNRKGMKKIPGYSWI 556



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 92/427 (21%), Positives = 191/427 (44%), Gaps = 26/427 (6%)

Query: 27  LFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQN 86
           LF      N+  ++ +I+G+  N    +++  F  +   GL  + FT   VL A     N
Sbjct: 67  LFSHTQFPNIFLYNTLINGFVNNHLFHETLDLFLSIRKHGLNLHGFTFPLVLKACTRASN 126

Query: 87  LELARSIHGLMVKFGLESD----------------------LFEGLKNPYLVSCNAIVAG 124
            +L   +H L+VK G   D                      +FE +    +V+  A+ +G
Sbjct: 127 RKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSG 186

Query: 125 FINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILD 184
           +      ++A+ LF      G+ P++  ++ V+  CV +G     E I     ++ +  +
Sbjct: 187 YTTAGKHREAIDLFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEEMEMQKN 246

Query: 185 VSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRK 244
             V  +++++Y+    ++ A  +F  M  KD+++W+ M+  +    +  + ++ F +M +
Sbjct: 247 SFVRTTLVNLYAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFLQMLQ 306

Query: 245 SRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDS 304
             +  D  +++  +S  A LG L  G+   + +      + L ++N++I MY+KCG +  
Sbjct: 307 ENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMAR 366

Query: 305 SRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASG 364
              VF ++ EK +V   A ISG  +NG  + +   F +  +    S D  T + +L    
Sbjct: 367 GFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGI-SPDGSTFLGLLCGCV 425

Query: 365 ELAALEICLQLHGIAFEAGFPRYRSVQN--CLISSYSKCGNVDLAYIVFEEMGFLRDVVS 422
               ++  L+    A    +   R+V++  C++  + + G +D AY +  +M    + + 
Sbjct: 426 HAGLIQDGLRFFN-AISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIV 484

Query: 423 WNTIIYG 429
           W  ++ G
Sbjct: 485 WGALLSG 491



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/384 (20%), Positives = 175/384 (45%), Gaps = 29/384 (7%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + LLS Y  SG++ +A  +F+EIPE++VV+W+ +  GY+  G H +++  F  M+  G+ 
Sbjct: 150 TSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSGYTTAGKHREAIDLFKKMVEMGVR 209

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------L 106
           P+S+ +V VL A   + +L+    I   M +  ++ +                      +
Sbjct: 210 PDSYFIVQVLSACVHVGDLDSGEWIVKHMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSV 269

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           F+ +    +V+ + ++ G+ +N   ++ +  F       L P+  +++  +  C +LG+ 
Sbjct: 270 FDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFLQMLQENLKPDQFSIVGFLSSCASLGAL 329

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
            L E    L  +   + ++ + N+++DMY+    +    ++F+EM+ KD++     +   
Sbjct: 330 DLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGL 389

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG-KQLHAQVVLGGLQSE 285
               +   +  +F +  K  I  D    L L+      G ++ G +  +A   +  L+  
Sbjct: 390 AKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRT 449

Query: 286 LRLSNSIIAMYSKCGDLDSS-RSVFNQITEKSLVSWTAIISG---YVQNGCAREALNQFI 341
           +     ++ ++ + G LD + R + +     + + W A++SG         A   L + I
Sbjct: 450 VEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELI 509

Query: 342 KMRQEKTDSVDSITLVSILTASGE 365
            +  E  ++ + + L +I + SG 
Sbjct: 510 AL--EPWNAGNYVQLSNIYSVSGR 531


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  235 bits (599), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 147/499 (29%), Positives = 251/499 (50%), Gaps = 67/499 (13%)

Query: 134 AVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLD 193
           A+  + + R   +  ++  + +V++ C  +    + + IHG ++K GL+ DV V N+++ 
Sbjct: 93  ALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQ 152

Query: 194 MYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY--------------AG------ 233
           MYS    L +A  +F +M  +DV+SW+ M+  ++   Y              AG      
Sbjct: 153 MYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCND 212

Query: 234 --DALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
             +  ++F  M +  +  + + +L+LI     +G ++ GK+LHA ++  G    L L+ +
Sbjct: 213 LEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATA 272

Query: 292 IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
           ++ MY KCG++ S+R++F+ +  K +++WTA+IS Y Q  C   A   F++MR       
Sbjct: 273 LVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRP- 331

Query: 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVF 411
           + +T+VS+L+      AL++    H    + G      ++  LI  Y+KCG++  A  +F
Sbjct: 332 NELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLF 391

Query: 412 EEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLT 471
            E    RD+ +WN ++ GYG++G+GE AL L+ +M   G  P+  T++  L+AC HAGL 
Sbjct: 392 SE-AIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLV 450

Query: 472 NDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMG--PN--IWR 527
            +G  +F +MI +  + P  EHYGC+VDLL RAG L +A     K++E M   PN  IW 
Sbjct: 451 VEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAY----KMIESMPVTPNIAIWG 506

Query: 528 ALLSGCVLH---------------------------------VGRFQDAEALRSGSQKKG 554
           A+L+ C +H                                   R+ D   +R   +  G
Sbjct: 507 AMLAACKIHKNSNMGELAARELLALEPQNCGYKVLMSNIYAAANRWNDVAGMRKAVKDTG 566

Query: 555 IIKIPGISFL--NSTSRDF 571
           I K PG+S +  N    DF
Sbjct: 567 IKKEPGMSSIEVNGLVHDF 585



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 98/422 (23%), Positives = 193/422 (45%), Gaps = 54/422 (12%)

Query: 55  SMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--------- 105
           ++  +++M    +  +SF +  VL A + +    + + IHG  VK GL SD         
Sbjct: 93  ALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQ 152

Query: 106 -----------------------------------LFEGLKNPYLVSCNAIVAGFINNKL 130
                                              LF G     +VS  A++AG+I    
Sbjct: 153 MYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCND 212

Query: 131 FQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNS 190
            ++   LF       + PN +TML++I  C  +G+  L + +H   ++ G  + +++  +
Sbjct: 213 LEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATA 272

Query: 191 VLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICD 250
           ++DMY    ++ +A  IF  M+ KDV++WT M+  +        A ++F +MR + +  +
Sbjct: 273 LVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPN 332

Query: 251 TVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFN 310
            + +++L+S+ A+ G L  GK  HA +   G++ ++ L  ++I MY+KCGD+  ++ +F+
Sbjct: 333 ELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFS 392

Query: 311 QITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALE 370
           +  ++ + +W  +++GY  +G   +AL  F +M        D IT +  L A        
Sbjct: 393 EAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPND-ITFIGALHACSHAG--- 448

Query: 371 ICLQLHGIAFEAGFPRYRSVQN-----CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNT 425
           + ++  G+ FE     +  V       C++    + G +D AY + E M    ++  W  
Sbjct: 449 LVVEGKGL-FEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGA 507

Query: 426 II 427
           ++
Sbjct: 508 ML 509



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/369 (20%), Positives = 164/369 (44%), Gaps = 46/369 (12%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSI---------------------- 41
           D +  + L+  Y + G +  A  LFD++ E++VVSWS                       
Sbjct: 143 DVFVVNALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTA 202

Query: 42  VIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK-- 99
           +I GY      E+  + F  M+   + PN  TM+ ++++   +  ++L + +H  +++  
Sbjct: 203 MIAGYIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNG 262

Query: 100 FGLE--------------------SDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFN 139
           FG+                       +F+ +KN  +++  A+++ +        A  LF 
Sbjct: 263 FGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFV 322

Query: 140 FFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLM 199
             R +G+ PN +TM++++  C   G+  + +  H    K G+ +DV +  +++DMY+   
Sbjct: 323 QMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCG 382

Query: 200 DLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLIS 259
           D+  A ++F E   +D+ +W  MM  +    Y   ALK+F EM    +  + +  +  + 
Sbjct: 383 DISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALH 442

Query: 260 VNAILGDLKRGKQLHAQVVLG-GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSL 317
             +  G +  GK L  +++   GL  ++     ++ +  + G LD +  +   +    ++
Sbjct: 443 ACSHAGLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNI 502

Query: 318 VSWTAIISG 326
             W A+++ 
Sbjct: 503 AIWGAMLAA 511



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 2/84 (2%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D    + L+  Y K G I  A+ LF E  ++++ +W++++ GY ++G+ EK++K F+ M
Sbjct: 366 VDVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEM 425

Query: 63  MLSGLLPNSFTMVGVLVAA--AGL 84
              G+ PN  T +G L A   AGL
Sbjct: 426 ETLGVKPNDITFIGALHACSHAGL 449


>gi|222622633|gb|EEE56765.1| hypothetical protein OsJ_06312 [Oryza sativa Japonica Group]
          Length = 836

 Score =  235 bits (599), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 161/592 (27%), Positives = 293/592 (49%), Gaps = 62/592 (10%)

Query: 4   DPYNSSKLLSNYFKSG---KIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           D  + + L+S Y K G    + +A   F  I  K+VVSW+ +I GYS NG  E+++  F 
Sbjct: 97  DTLSGNALVSMYAKCGGSIAMDDAHLAFSTICCKDVVSWNSIIAGYSENGLFEEALALFG 156

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQ-NLELARSIHGLMVKFGLESD-------------- 105
            M+    LPN  T+  VL   + ++      + IHG +V+ GLE D              
Sbjct: 157 QMISEECLPNYSTLANVLPFCSLVEYGRHYGKEIHGFVVRHGLEMDISVSNALMAHYSKV 216

Query: 106 --------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
                   +F   K   +V+ N ++AG++ N+   +A+ LF     +G+ P++V++++++
Sbjct: 217 CEMRAVESIFRSSKMGDIVTWNTVIAGYVMNRYPSRALKLFQGLLFAGMAPDSVSLISLL 276

Query: 158 RGCVALGSRALCELIHGLTIKLG-LILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
             C  +G+  +   +HG   +   L+ + S+ N+++  YS     DAA + F  ++ KD 
Sbjct: 277 TACAQVGNLRVGIRVHGYIFRHPELLQETSLMNALVSFYSQCDRFDAAFRSFITIQNKDS 336

Query: 217 ISWTRMMGLFVDFEYAGDA-LKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
           +SW  ++    + E+  +   ++  EM       D+V +LN+I ++   G +K  ++ H 
Sbjct: 337 VSWNAILSACANSEHHIEQFFRLLGEMWHDVTQWDSVTILNIIRMSTFCG-IKMVQESHG 395

Query: 276 QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
             +  G   +  ++N+I+  Y+KCG L  + ++F  +  +++V+   +IS Y++N C  +
Sbjct: 396 YSLRVGYTGDSSVANAILDAYAKCGYLHDAETLFRSLAGRNIVTGNTMISCYLKNNCVED 455

Query: 336 ALNQFIKMRQEKTDS------------------------------VDSITLVSILTASGE 365
           A   F  M ++   +                               D+I++ +IL+A   
Sbjct: 456 AEMTFNHMAEKDLTTWNLMSRLYAQNDLCDQAFCLFHQLQSEGLNPDTISITNILSACIH 515

Query: 366 LAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNT 425
           L+++++  Q HG    A       ++  L+ +YSKCGN+  AY +F ++   +D+V +  
Sbjct: 516 LSSVQLVKQCHGYMLRASLEDIH-LEGALLDAYSKCGNIANAYNLF-QVSLHKDLVIFTA 573

Query: 426 IIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEEN 485
           +I  Y ++G  E A+ L+ KM      PD     ++L+AC HAGL + G+ IF  + E  
Sbjct: 574 MIGAYAMHGMAEKAVELFSKMLTLDIKPDHVVLTALLSACSHAGLVDAGIKIFKSIREIY 633

Query: 486 KVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG-MGPNIWRALLSGCVLH 536
            V+P++EH  C+VDLLAR+G L DA   A  +    +  N W +LL  C +H
Sbjct: 634 GVEPTEEHCACMVDLLARSGRLQDAYSFALDMPPHVVNANAWGSLLGACKVH 685



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 145/519 (27%), Positives = 250/519 (48%), Gaps = 73/519 (14%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL---LPNS 71
           Y + G + +A  +FDE+   + V  +I+I   S  G +      F  M+ SG+   +P +
Sbjct: 4   YGRIGSLADAHTVFDEMSCSDAVCRNILITASSRAGLYNDVFHLFRAMLASGVDESMPTA 63

Query: 72  FTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG---------------LKNPYL- 115
            T+  VL   A L+ L   RSIHG ++K GLE D   G               + + +L 
Sbjct: 64  VTVAVVLPVCAKLRVLRAGRSIHGYVIKTGLEFDTLSGNALVSMYAKCGGSIAMDDAHLA 123

Query: 116 ---------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC--VALG 164
                    VS N+I+AG+  N LF++A+ LF        +PN  T+  V+  C  V  G
Sbjct: 124 FSTICCKDVVSWNSIIAGYSENGLFEEALALFGQMISEECLPNYSTLANVLPFCSLVEYG 183

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
            R   + IHG  ++ GL +D+SV+N+++  YS + ++ A   IFR  +  D+++W  ++ 
Sbjct: 184 -RHYGKEIHGFVVRHGLEMDISVSNALMAHYSKVCEMRAVESIFRSSKMGDIVTWNTVIA 242

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG-LQ 283
            +V   Y   ALK+F+ +  + +  D+V+L++L++  A +G+L+ G ++H  +     L 
Sbjct: 243 GYVMNRYPSRALKLFQGLLFAGMAPDSVSLISLLTACAQVGNLRVGIRVHGYIFRHPELL 302

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA--REALNQFI 341
            E  L N++++ YS+C   D++   F  I  K  VSW AI+S      CA     + QF 
Sbjct: 303 QETSLMNALVSFYSQCDRFDAAFRSFITIQNKDSVSWNAILS-----ACANSEHHIEQFF 357

Query: 342 KMRQEKTDSV---DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
           ++  E    V   DS+T+++I+  S     +++  + HG +   G+    SV N ++ +Y
Sbjct: 358 RLLGEMWHDVTQWDSVTILNIIRMS-TFCGIKMVQESHGYSLRVGYTGDSSVANAILDAY 416

Query: 399 SKCGNVDLAYIVFE--------------------------EMGF----LRDVVSWNTIIY 428
           +KCG +  A  +F                           EM F     +D+ +WN +  
Sbjct: 417 AKCGYLHDAETLFRSLAGRNIVTGNTMISCYLKNNCVEDAEMTFNHMAEKDLTTWNLMSR 476

Query: 429 GYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
            Y  N   + A  L+H++   G  PD+ +  +IL+AC H
Sbjct: 477 LYAQNDLCDQAFCLFHQLQSEGLNPDTISITNILSACIH 515



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 114/500 (22%), Positives = 227/500 (45%), Gaps = 92/500 (18%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ L+++Y K  +++  E++F      ++V+W+ VI GY +N +  +++K F  ++ +G+
Sbjct: 206 SNALMAHYSKVCEMRAVESIFRSSKMGDIVTWNTVIAGYVMNRYPSRALKLFQGLLFAGM 265

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGL----------------MVKFGLESDLFEG-- 109
            P+S +++ +L A A + NL +   +HG                 +V F  + D F+   
Sbjct: 266 APDSVSLISLLTACAQVGNLRVGIRVHGYIFRHPELLQETSLMNALVSFYSQCDRFDAAF 325

Query: 110 -----LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLV------PNAVTMLTVIR 158
                ++N   VS NAI++   N++   +      FFR  G +       ++VT+L +IR
Sbjct: 326 RSFITIQNKDSVSWNAILSACANSEHHIE-----QFFRLLGEMWHDVTQWDSVTILNIIR 380

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMY----------------------- 195
                G + + E  HG ++++G   D SV N++LD Y                       
Sbjct: 381 MSTFCGIKMVQE-SHGYSLRVGYTGDSSVANAILDAYAKCGYLHDAETLFRSLAGRNIVT 439

Query: 196 -----SCLMD---LDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRI 247
                SC +    ++ A   F  M  KD+ +W  M  L+   +    A  +F +++   +
Sbjct: 440 GNTMISCYLKNNCVEDAEMTFNHMAEKDLTTWNLMSRLYAQNDLCDQAFCLFHQLQSEGL 499

Query: 248 ICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRS 307
             DT+++ N++S    L  ++  KQ H  ++   L+ ++ L  +++  YSKCG++ ++ +
Sbjct: 500 NPDTISITNILSACIHLSSVQLVKQCHGYMLRASLE-DIHLEGALLDAYSKCGNIANAYN 558

Query: 308 VFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELA 367
           +F     K LV +TA+I  Y  +G A +A+  F KM        D + L ++L+A     
Sbjct: 559 LFQVSLHKDLVIFTAMIGAYAMHGMAEKAVELFSKMLTLDIKP-DHVVLTALLSACS--- 614

Query: 368 ALEICLQLHGIAFEAGFPRYRSVQN------------CLISSYSKCGNVDLAYIVFEEM- 414
                   H    +AG   ++S++             C++   ++ G +  AY    +M 
Sbjct: 615 --------HAGLVDAGIKIFKSIREIYGVEPTEEHCACMVDLLARSGRLQDAYSFALDMP 666

Query: 415 GFLRDVVSWNTIIYGYGVNG 434
             + +  +W +++    V+G
Sbjct: 667 PHVVNANAWGSLLGACKVHG 686



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 97/354 (27%), Positives = 161/354 (45%), Gaps = 20/354 (5%)

Query: 192 LDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRI---I 248
           +DMY  +  L  A  +F EM C D +    ++          D   +FR M  S +   +
Sbjct: 1   MDMYGRIGSLADAHTVFDEMSCSDAVCRNILITASSRAGLYNDVFHLFRAMLASGVDESM 60

Query: 249 CDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGD---LDSS 305
              V +  ++ V A L  L+ G+ +H  V+  GL+ +    N++++MY+KCG    +D +
Sbjct: 61  PTAVTVAVVLPVCAKLRVLRAGRSIHGYVIKTGLEFDTLSGNALVSMYAKCGGSIAMDDA 120

Query: 306 RSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT----DSVDSITLVSILT 361
              F+ I  K +VSW +II+GY +NG   EAL  F +M  E+      ++ ++     L 
Sbjct: 121 HLAFSTICCKDVVSWNSIIAGYSENGLFEEALALFGQMISEECLPNYSTLANVLPFCSLV 180

Query: 362 ASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFE--EMGFLRD 419
             G     EI    HG     G     SV N L++ YSK   +     +F   +MG   D
Sbjct: 181 EYGRHYGKEI----HGFVVRHGLEMDISVSNALMAHYSKVCEMRAVESIFRSSKMG---D 233

Query: 420 VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFN 479
           +V+WNT+I GY +N +   AL L+  +   G  PDS + +S+L AC   G    G+ +  
Sbjct: 234 IVTWNTVIAGYVMNRYPSRALKLFQGLLFAGMAPDSVSLISLLTACAQVGNLRVGIRVHG 293

Query: 480 QMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGC 533
            +    ++         +V   ++     DA+  +   ++      W A+LS C
Sbjct: 294 YIFRHPELLQETSLMNALVSFYSQCDRF-DAAFRSFITIQNKDSVSWNAILSAC 346


>gi|356557599|ref|XP_003547103.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31070,
           mitochondrial-like [Glycine max]
          Length = 601

 Score =  235 bits (599), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 156/530 (29%), Positives = 279/530 (52%), Gaps = 31/530 (5%)

Query: 43  IHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL 102
           I  +   G + ++++ FS + L G    SF +  V+ A++  Q       +H L +K G 
Sbjct: 23  IKSFLSKGLYHQTLQLFSELHLCGHSSISFFLPSVIKASSSAQCHTFGTQLHCLALKTGS 82

Query: 103 ESD----------------------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNF 140
            S+                      +F+ + +   ++ N+++ G+++N   ++A+   N 
Sbjct: 83  HSETVVSNSIITMYFKFSDVGSARQVFDTMPHRDPITWNSLINGYLHNGYLEEALEALND 142

Query: 141 FRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTI---KLGLILDVSVNNSVLDMYSC 197
               GLVP    + +V+  C       +   IH L +   ++G  + +S   +++D Y  
Sbjct: 143 VYLLGLVPKPELLASVVSMCGRRMGSKIGRQIHALVVVNERIGQSMFLST--ALVDFYFR 200

Query: 198 LMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNL 257
             D   A+++F  ME K+V+SWT M+   +  +   +A   FR M+   +  + V  + L
Sbjct: 201 CGDSLMALRVFDGMEVKNVVSWTTMISGCIAHQDYDEAFACFRAMQAEGVCPNRVTSIAL 260

Query: 258 ISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGD-LDSSRSVFNQITEKS 316
           +S  A  G +K GK++H      G +S    S++++ MY +CG+ +  +  +F   + + 
Sbjct: 261 LSACAEPGFVKHGKEIHGYAFRHGFESCPSFSSALVNMYCQCGEPMHLAELIFEGSSFRD 320

Query: 317 LVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLH 376
           +V W++II  + + G + +AL  F KMR E+ +  + +TL+++++A   L++L+    LH
Sbjct: 321 VVLWSSIIGSFSRRGDSFKALKLFNKMRTEEIEP-NYVTLLAVISACTNLSSLKHGCGLH 379

Query: 377 GIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHG 436
           G  F+ GF    SV N LI+ Y+KCG ++ +  +F EM   RD V+W+++I  YG++G G
Sbjct: 380 GYIFKFGFCFSISVGNALINMYAKCGCLNGSRKMFLEMPN-RDNVTWSSLISAYGLHGCG 438

Query: 437 ETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGC 496
           E AL ++++M E G  PD+ T+L++L+AC HAGL  +G  IF Q+  + ++  + EHY C
Sbjct: 439 EQALQIFYEMNERGVKPDAITFLAVLSACNHAGLVAEGQRIFKQVRADCEIPLTIEHYAC 498

Query: 497 VVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEAL 546
           +VDLL R+G L  A  +   +       IW +L+S C LH GR   AE L
Sbjct: 499 LVDLLGRSGKLEYALEIRRTMPMKPSARIWSSLVSACKLH-GRLDIAEML 547



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 119/482 (24%), Positives = 231/482 (47%), Gaps = 28/482 (5%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ +++ YFK   +  A  +FD +P ++ ++W+ +I+GY  NG+ E++++A + + L GL
Sbjct: 89  SNSIITMYFKFSDVGSARQVFDTMPHRDPITWNSLINGYLHNGYLEEALEALNDVYLLGL 148

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMV---KFG--------------------LES 104
           +P    +  V+         ++ R IH L+V   + G                    +  
Sbjct: 149 VPKPELLASVVSMCGRRMGSKIGRQIHALVVVNERIGQSMFLSTALVDFYFRCGDSLMAL 208

Query: 105 DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
            +F+G++   +VS   +++G I ++ + +A   F   +  G+ PN VT + ++  C   G
Sbjct: 209 RVFDGMEVKNVVSWTTMISGCIAHQDYDEAFACFRAMQAEGVCPNRVTSIALLSACAEPG 268

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMY-SCLMDLDAAIQIFREMECKDVISWTRMM 223
                + IHG   + G     S ++++++MY  C   +  A  IF     +DV+ W+ ++
Sbjct: 269 FVKHGKEIHGYAFRHGFESCPSFSSALVNMYCQCGEPMHLAELIFEGSSFRDVVLWSSII 328

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
           G F     +  ALK+F +MR   I  + V LL +IS    L  LK G  LH  +   G  
Sbjct: 329 GSFSRRGDSFKALKLFNKMRTEEIEPNYVTLLAVISACTNLSSLKHGCGLHGYIFKFGFC 388

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
             + + N++I MY+KCG L+ SR +F ++  +  V+W+++IS Y  +GC  +AL  F +M
Sbjct: 389 FSISVGNALINMYAKCGCLNGSRKMFLEMPNRDNVTWSSLISAYGLHGCGEQALQIFYEM 448

Query: 344 RQEKTDSVDSITLVSILTASGELAAL-EICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
             E+    D+IT +++L+A      + E       +  +   P       CL+    + G
Sbjct: 449 -NERGVKPDAITFLAVLSACNHAGLVAEGQRIFKQVRADCEIPLTIEHYACLVDLLGRSG 507

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
            ++ A  +   M        W++++    ++G  + A  L  ++  +   P+++   ++L
Sbjct: 508 KLEYALEIRRTMPMKPSARIWSSLVSACKLHGRLDIAEMLAPQLIRSE--PNNAGNYTLL 565

Query: 463 NA 464
           N 
Sbjct: 566 NT 567


>gi|255570402|ref|XP_002526160.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534537|gb|EEF36236.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 762

 Score =  234 bits (598), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 153/511 (29%), Positives = 268/511 (52%), Gaps = 37/511 (7%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y  S L++ Y K  +++ A+ +FD I E+NVV W+ ++ GY+ NG+  + ++  S+M   
Sbjct: 221 YVGSSLINMYAKCKELEAAKKVFDPIDERNVVLWNAMVGGYAQNGYAHEVIELLSNMKSC 280

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG---------------- 109
           G  P+ FT   +L A A L+++E  R +H +++K    S+LF G                
Sbjct: 281 GFHPDEFTYTSILSACACLEHVEGGRQLHSIIIKNKFASNLFVGNALIDMYAKSGFLEDA 340

Query: 110 ------LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
                 +K+   VS NAI+ G++  +   +A L+F      G++P+ V++ +++  C  +
Sbjct: 341 RKQFELMKSRDNVSWNAIIVGYVQEEDEVEAFLMFQKMHLVGILPDEVSLASILSACANV 400

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
                 + IH L++K GL   +   +S++DMY+   D+ +A +I + M    V+S   ++
Sbjct: 401 EGFEQGKPIHCLSVKSGLETSLYAGSSLIDMYAKCGDVGSAQKILKSMPEHSVVSINALI 460

Query: 224 GLF--VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
             +  V+ E   +A+ +F +M+   +    +   +L+        L  G Q+H  ++  G
Sbjct: 461 AGYAPVNLE---EAIILFEKMQAEGLNPSEITFASLLDGCGGPEQLILGIQIHCLILKRG 517

Query: 282 LQ-SELRLSNSIIAMYSKCGDLDSSRSVFNQITE-KSLVSWTAIISGYVQNGCAREALNQ 339
           LQ  +  L  S++ MY K      +R +F++ +  KS + WTA+ISG  QN C+ EAL  
Sbjct: 518 LQYDDDFLGVSLLGMYVKSLRKTDARILFSEFSNPKSTILWTAMISGLAQNNCSDEALQF 577

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           + +MR       D  T VS+L A   L+++    ++H + F  G     S  + LI  Y+
Sbjct: 578 YQEMRSCNALP-DQATFVSVLRACAVLSSIGDGREIHSLIFRTGLDLDESTCSALIDMYA 636

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           KCG+V  +  VFE+M    DV+SWN++I G+  NG+ E AL ++++M +   +PD  T+L
Sbjct: 637 KCGDVRSSMQVFEDMHSKNDVISWNSMIVGFAKNGYAENALRIFNEMKQAHVIPDDVTFL 696

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPS 490
            +L AC HAG  ++G  IF+       +KPS
Sbjct: 697 GVLTACSHAGRVSEGRQIFD-------MKPS 720



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 132/457 (28%), Positives = 223/457 (48%), Gaps = 18/457 (3%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+  Y K+ ++ +   +FD     + VSW+ +I GY   G  E++++ F  M   G  P+
Sbjct: 59  LIDMYAKNNRMSDCRRVFDGGVSLDTVSWTSLIAGYVKAGLPEEALEVFEQMKKVGREPD 118

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKL 130
               V V+ A   L  L+ A               LF  + NP +V+ N +++G      
Sbjct: 119 QVAFVTVINAYVALGRLDDALG-------------LFFQMPNPNVVAWNVMISGHAQRGH 165

Query: 131 FQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNS 190
             +++ LF   R +G+     T+ +V+    +L       L+H   IK GL  +V V +S
Sbjct: 166 ETKSIELFCNMRKAGIKSTRSTLGSVLSAIASLTDLDFGLLVHAEAIKQGLDSNVYVGSS 225

Query: 191 VLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICD 250
           +++MY+   +L+AA ++F  ++ ++V+ W  M+G +    YA + +++   M+      D
Sbjct: 226 LINMYAKCKELEAAKKVFDPIDERNVVLWNAMVGGYAQNGYAHEVIELLSNMKSCGFHPD 285

Query: 251 TVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFN 310
                +++S  A L  ++ G+QLH+ ++     S L + N++I MY+K G L+ +R  F 
Sbjct: 286 EFTYTSILSACACLEHVEGGRQLHSIIIKNKFASNLFVGNALIDMYAKSGFLEDARKQFE 345

Query: 311 QITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALE 370
            +  +  VSW AII GYVQ     EA   F KM        D ++L SIL+A   +   E
Sbjct: 346 LMKSRDNVSWNAIIVGYVQEEDEVEAFLMFQKMHLVGILP-DEVSLASILSACANVEGFE 404

Query: 371 ICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGY 430
               +H ++ ++G        + LI  Y+KCG+V  A  + + M     VVS N +I GY
Sbjct: 405 QGKPIHCLSVKSGLETSLYAGSSLIDMYAKCGDVGSAQKILKSMP-EHSVVSINALIAGY 463

Query: 431 G-VNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
             VN   E A+ L+ KM   G  P   T+ S+L+ CG
Sbjct: 464 APVN--LEEAIILFEKMQAEGLNPSEITFASLLDGCG 498



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 130/434 (29%), Positives = 202/434 (46%), Gaps = 59/434 (13%)

Query: 56  MKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE------------ 103
           +K +  +   G+ PN FT   VL   A L ++E  R +H  +VK G E            
Sbjct: 3   LKCYGLLWSHGMWPNEFTFAIVLSGCARLDSVEFGRLVHCNVVKLGFEFSSFCVGALIDM 62

Query: 104 -------SD---LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTM 153
                  SD   +F+G  +   VS  +++AG++   L ++A+ +F   +  G  P+ V  
Sbjct: 63  YAKNNRMSDCRRVFDGGVSLDTVSWTSLIAGYVKAGLPEEALEVFEQMKKVGREPDQVAF 122

Query: 154 LTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC 213
           +TVI   VALG                                    LD A+ +F +M  
Sbjct: 123 VTVINAYVALGR-----------------------------------LDDALGLFFQMPN 147

Query: 214 KDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQL 273
            +V++W  M+       +   ++++F  MRK+ I      L +++S  A L DL  G  +
Sbjct: 148 PNVVAWNVMISGHAQRGHETKSIELFCNMRKAGIKSTRSTLGSVLSAIASLTDLDFGLLV 207

Query: 274 HAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA 333
           HA+ +  GL S + + +S+I MY+KC +L++++ VF+ I E+++V W A++ GY QNG A
Sbjct: 208 HAEAIKQGLDSNVYVGSSLINMYAKCKELEAAKKVFDPIDERNVVLWNAMVGGYAQNGYA 267

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC 393
            E +     M+       D  T  SIL+A   L  +E   QLH I  +  F     V N 
Sbjct: 268 HEVIELLSNMKSCGFHP-DEFTYTSILSACACLEHVEGGRQLHSIIIKNKFASNLFVGNA 326

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           LI  Y+K G ++ A   FE M   RD VSWN II GY        A  ++ KM   G +P
Sbjct: 327 LIDMYAKSGFLEDARKQFELMK-SRDNVSWNAIIVGYVQEEDEVEAFLMFQKMHLVGILP 385

Query: 454 DSSTYLSILNACGH 467
           D  +  SIL+AC +
Sbjct: 386 DEVSLASILSACAN 399



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 107/390 (27%), Positives = 177/390 (45%), Gaps = 39/390 (10%)

Query: 145 GLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAA 204
           G+ PN  T   V+ GC  L S     L+H   +KLG         +++DMY+    +   
Sbjct: 13  GMWPNEFTFAIVLSGCARLDSVEFGRLVHCNVVKLGFEFSSFCVGALIDMYAKNNRMSDC 72

Query: 205 IQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAIL 264
            ++F      D +SWT ++  +V      +AL++F +M+K     D VA + +I      
Sbjct: 73  RRVFDGGVSLDTVSWTSLIAGYVKAGLPEEALEVFEQMKKVGREPDQVAFVTVI------ 126

Query: 265 GDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAII 324
                                    N+ +A+    G LD +  +F Q+   ++V+W  +I
Sbjct: 127 -------------------------NAYVAL----GRLDDALGLFFQMPNPNVVAWNVMI 157

Query: 325 SGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGF 384
           SG+ Q G   +++  F  MR+    S  S TL S+L+A   L  L+  L +H  A + G 
Sbjct: 158 SGHAQRGHETKSIELFCNMRKAGIKSTRS-TLGSVLSAIASLTDLDFGLLVHAEAIKQGL 216

Query: 385 PRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH 444
                V + LI+ Y+KC  ++ A  VF+ +   R+VV WN ++ GY  NG+    + L  
Sbjct: 217 DSNVYVGSSLINMYAKCKELEAAKKVFDPID-ERNVVLWNAMVGGYAQNGYAHEVIELLS 275

Query: 445 KMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARA 504
            M   G  PD  TY SIL+AC        G  + + +I +NK   +      ++D+ A++
Sbjct: 276 NMKSCGFHPDEFTYTSILSACACLEHVEGGRQL-HSIIIKNKFASNLFVGNALIDMYAKS 334

Query: 505 GCLSDASGLAGKLLEGMGPNIWRALLSGCV 534
           G L DA     +L++      W A++ G V
Sbjct: 335 GFLEDARK-QFELMKSRDNVSWNAIIVGYV 363



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 55/99 (55%), Gaps = 1/99 (1%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKN-VVSWSIVIHGYSINGFHEKSMKAFSH 61
           +D    S L+  Y K G ++ +  +F+++  KN V+SW+ +I G++ NG+ E +++ F+ 
Sbjct: 623 LDESTCSALIDMYAKCGDVRSSMQVFEDMHSKNDVISWNSMIVGFAKNGYAENALRIFNE 682

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKF 100
           M  + ++P+  T +GVL A +    +   R I  +   F
Sbjct: 683 MKQAHVIPDDVTFLGVLTACSHAGRVSEGRQIFDMKPSF 721


>gi|302798965|ref|XP_002981242.1| hypothetical protein SELMODRAFT_113974 [Selaginella moellendorffii]
 gi|300151296|gb|EFJ17943.1| hypothetical protein SELMODRAFT_113974 [Selaginella moellendorffii]
          Length = 734

 Score =  234 bits (598), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 154/554 (27%), Positives = 277/554 (50%), Gaps = 42/554 (7%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTM 74
           Y K G + +A+  FDEI +KN   W+++I GY+ +G + ++++ F  M    + PN F  
Sbjct: 59  YAKCGCLADAKAAFDEIADKNDFVWNLMISGYARSGKNREALELFHKM---DIPPNGFIF 115

Query: 75  VGVLVAAAGLQNLELARSIHGLMVKF-GLESD----------------------LFEGLK 111
              L A AGL +LE  R IH  +++   + SD                      +F+ + 
Sbjct: 116 ASALAACAGLGDLEQGREIHKRVLESPSIASDVVVQNSLVTMYARCGSVLEGIKIFDAMP 175

Query: 112 NPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCEL 171
              LVS NA+++ F+     +QA+ L++  +   L PN     +++  C +LG+  L   
Sbjct: 176 RKNLVSWNAMISAFVQCDYPEQALELYHRMKRERLEPNGFVFASLLTACASLGNLELGSS 235

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           IH     LGL  D+ + N++++MYS    +D A+++F  +  +DV +WT M+  +    +
Sbjct: 236 IHQRITSLGLQRDIVMENALINMYSKCGCMDEALEVFSGLATRDVFTWTSMIAGYAQLGF 295

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
             +A   +  MR+  +   +   + L+S  +    L++GK LH +V   G +S   +  +
Sbjct: 296 GSEAFAFYDGMRRDCVSPTSATFVALLSACST---LEQGKHLHEEVKAFGFESITVVETA 352

Query: 292 IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
           ++ MYS+CG L+ +  +F ++ +K  VSW+A+++ + Q G   +AL  F +M  E    +
Sbjct: 353 LMFMYSRCGSLEDAEFLFAKMQQKDYVSWSAMVTSHAQFGDPGKALTLFRQMILEGM-QL 411

Query: 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVF 411
              T  S L A        +   +  +   +G  +  S++  L+S+YSKCG+++ A  +F
Sbjct: 412 SLPTFCSALQACSLKRDSRLSKTIRELIDWSGIDKMDSIRADLVSAYSKCGDMEEARKIF 471

Query: 412 EEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLT 471
           + M   RDV++W  +I GY   G  + AL L+H+M   G  PDS T+ S+L AC +    
Sbjct: 472 DRMES-RDVLTWTVMIKGYAQQGDSKAALELFHRMKPEGVEPDSVTFSSVLQACSN---L 527

Query: 472 NDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN---IWRA 528
            DG  +  +++     K S      ++++ AR G + DA     ++ E M  +    W A
Sbjct: 528 EDGREVHARILAAQGGKMSDFLGNGLINMYARCGSMRDAR----QIFESMDRSSRISWSA 583

Query: 529 LLSGCVLHVGRFQD 542
           +++ C  H G+  D
Sbjct: 584 IMTLCARH-GQHDD 596



 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 146/526 (27%), Positives = 252/526 (47%), Gaps = 31/526 (5%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L++ Y + G + E   +FD +P KN+VSW+ +I  +    + E++++ +  M    L PN
Sbjct: 154 LVTMYARCGSVLEGIKIFDAMPRKNLVSWNAMISAFVQCDYPEQALELYHRMKRERLEPN 213

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------------FE 108
            F    +L A A L NLEL  SIH  +   GL+ D+                      F 
Sbjct: 214 GFVFASLLTACASLGNLELGSSIHQRITSLGLQRDIVMENALINMYSKCGCMDEALEVFS 273

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
           GL    + +  +++AG+       +A   ++  R   + P + T + ++  C  L     
Sbjct: 274 GLATRDVFTWTSMIAGYAQLGFGSEAFAFYDGMRRDCVSPTSATFVALLSACSTLEQG-- 331

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
            + +H      G      V  +++ MYS    L+ A  +F +M+ KD +SW+ M+     
Sbjct: 332 -KHLHEEVKAFGFESITVVETALMFMYSRCGSLEDAEFLFAKMQQKDYVSWSAMVTSHAQ 390

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
           F   G AL +FR+M    +        + +   ++  D +  K +   +   G+     +
Sbjct: 391 FGDPGKALTLFRQMILEGMQLSLPTFCSALQACSLKRDSRLSKTIRELIDWSGIDKMDSI 450

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
              +++ YSKCGD++ +R +F+++  + +++WT +I GY Q G ++ AL  F +M+ E  
Sbjct: 451 RADLVSAYSKCGDMEEARKIFDRMESRDVLTWTVMIKGYAQQGDSKAALELFHRMKPEGV 510

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEA-GFPRYRSVQNCLISSYSKCGNVDLA 407
           +  DS+T  S+L A   L   E   ++H     A G      + N LI+ Y++CG++  A
Sbjct: 511 EP-DSVTFSSVLQACSNL---EDGREVHARILAAQGGKMSDFLGNGLINMYARCGSMRDA 566

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
             +FE M      +SW+ I+     +G  +  +  Y  M   G VPD  T ++ILN+C H
Sbjct: 567 RQIFESMD-RSSRISWSAIMTLCARHGQHDDIIDTYRLMVNEGVVPDGVTLIAILNSCSH 625

Query: 468 AGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL 513
           AGLT++    F  +I + ++    EHY C+VDLL RAG L +A  L
Sbjct: 626 AGLTDEACHYFTWIISDFELPHLDEHYQCMVDLLCRAGRLDEAEEL 671



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 127/258 (49%), Gaps = 15/258 (5%)

Query: 266 DLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIIS 325
           ++  G++LH  +   G      L   ++ MY+KCG L  +++ F++I +K+   W  +IS
Sbjct: 29  NVSEGRRLHDDLRRSGYGDSSYLRRCVVQMYAKCGCLADAKAAFDEIADKNDFVWNLMIS 88

Query: 326 GYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFP 385
           GY ++G  REAL  F KM        +     S L A   L  LE   ++H    E+  P
Sbjct: 89  GYARSGKNREALELFHKMDIPP----NGFIFASALAACAGLGDLEQGREIHKRVLES--P 142

Query: 386 RYRS---VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALAL 442
              S   VQN L++ Y++CG+V     +F+ M   +++VSWN +I  +    + E AL L
Sbjct: 143 SIASDVVVQNSLVTMYARCGSVLEGIKIFDAMP-RKNLVSWNAMISAFVQCDYPEQALEL 201

Query: 443 YHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLA 502
           YH+M      P+   + S+L AC   G    G  I +Q I    ++        ++++ +
Sbjct: 202 YHRMKRERLEPNGFVFASLLTACASLGNLELGSSI-HQRITSLGLQRDIVMENALINMYS 260

Query: 503 RAGCLSDA----SGLAGK 516
           + GC+ +A    SGLA +
Sbjct: 261 KCGCMDEALEVFSGLATR 278


>gi|218190515|gb|EEC72942.1| hypothetical protein OsI_06806 [Oryza sativa Indica Group]
          Length = 1030

 Score =  234 bits (598), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 161/592 (27%), Positives = 293/592 (49%), Gaps = 62/592 (10%)

Query: 4   DPYNSSKLLSNYFKSG---KIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           D  + + L+S Y K G    + +A   F  I  K+VVSW+ +I GYS NG  E+++  F 
Sbjct: 232 DTLSGNALVSMYAKCGGSIAMDDAHLAFSTICCKDVVSWNSIIAGYSENGLFEEALALFG 291

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQ-NLELARSIHGLMVKFGLESD-------------- 105
            M+    LPN  T+  VL   + ++      + IHG +V+ GLE D              
Sbjct: 292 QMISEECLPNYSTLANVLPFCSLVEYGRHYGKEIHGFVVRHGLEMDISVSNALMAHYSKV 351

Query: 106 --------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
                   +F   K   +V+ N ++AG++ N+   +A+ LF     +G+ P++V++++++
Sbjct: 352 CEMRAVESIFRSSKMGDIVTWNTVIAGYVMNRYPSRALKLFQGLLFAGMAPDSVSLISLL 411

Query: 158 RGCVALGSRALCELIHGLTIKLG-LILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
             C  +G+  +   +HG   +   L+ + S+ N+++  YS     DAA + F  ++ KD 
Sbjct: 412 TACAQVGNLRVGIRVHGYIFRHPELLQETSLMNALVSFYSQCDRFDAAFRSFITIQNKDS 471

Query: 217 ISWTRMMGLFVDFEYAGDA-LKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
           +SW  ++    + E+  +   ++  EM       D+V +LN+I ++   G +K  ++ H 
Sbjct: 472 VSWNAILSACANSEHHIEQFFRLLGEMWHDVTQWDSVTILNIIRMSTFCG-IKMVQESHG 530

Query: 276 QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
             +  G   +  ++N+I+  Y+KCG L  + ++F  +  +++V+   +IS Y++N C  +
Sbjct: 531 YSLRVGYTGDSSVANAILDAYAKCGYLHDAETLFRSLAGRNIVTGNTMISCYLKNNCVED 590

Query: 336 ALNQFIKMRQEKTDS------------------------------VDSITLVSILTASGE 365
           A   F  M ++   +                               D+I++ +IL+A   
Sbjct: 591 AEMTFNHMAEKDLTTWNLMSRLYAQNDLCDQAFCLFHQLQSEGLNPDTISITNILSACIH 650

Query: 366 LAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNT 425
           L+++++  Q HG    A       ++  L+ +YSKCGN+  AY +F ++   +D+V +  
Sbjct: 651 LSSVQLVKQCHGYMLRASLEDIH-LEGALLDAYSKCGNIANAYNLF-QVSLHKDLVIFTA 708

Query: 426 IIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEEN 485
           +I  Y ++G  E A+ L+ KM      PD     ++L+AC HAGL + G+ IF  + E  
Sbjct: 709 MIGAYAMHGMAEKAVELFSKMLTLDIKPDHVVLTALLSACSHAGLVDAGIKIFKSIREIY 768

Query: 486 KVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG-MGPNIWRALLSGCVLH 536
            V+P++EH  C+VDLLAR+G L DA   A  +    +  N W +LL  C +H
Sbjct: 769 GVEPTEEHCACMVDLLARSGRLQDAYSFALDMPPHVVNANAWGSLLGACKVH 820



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 143/524 (27%), Positives = 252/524 (48%), Gaps = 69/524 (13%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           +  ++  Y + G + +A  +FDE+   + V  +I+I   S  G +      F  M+ SG+
Sbjct: 132 AKAVMDMYGRIGSLADAHTVFDEMSCSDAVCRNILITASSRAGLYNDVFHLFRAMLASGV 191

Query: 68  ---LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--------------- 109
              +P + T+  VL   A L+ L   RSIHG ++K GLE D   G               
Sbjct: 192 DESMPTAVTVAVVLPVCAKLRVLRAGRSIHGYVIKTGLEFDTLSGNALVSMYAKCGGSIA 251

Query: 110 LKNPYL----------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
           + + +L          VS N+I+AG+  N LF++A+ LF        +PN  T+  V+  
Sbjct: 252 MDDAHLAFSTICCKDVVSWNSIIAGYSENGLFEEALALFGQMISEECLPNYSTLANVLPF 311

Query: 160 C--VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
           C  V  G R   + IHG  ++ GL +D+SV+N+++  YS + ++ A   IFR  +  D++
Sbjct: 312 CSLVEYG-RHYGKEIHGFVVRHGLEMDISVSNALMAHYSKVCEMRAVESIFRSSKMGDIV 370

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           +W  ++  +V   Y   ALK+F+ +  + +  D+V+L++L++  A +G+L+ G ++H  +
Sbjct: 371 TWNTVIAGYVMNRYPSRALKLFQGLLFAGMAPDSVSLISLLTACAQVGNLRVGIRVHGYI 430

Query: 278 VLGG-LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
                L  E  L N++++ YS+C   D++   F  I  K  VSW AI+S       +   
Sbjct: 431 FRHPELLQETSLMNALVSFYSQCDRFDAAFRSFITIQNKDSVSWNAILSACAN---SEHH 487

Query: 337 LNQFIKMRQEKTDSV---DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC 393
           + QF ++  E    V   DS+T+++I+  S     +++  + HG +   G+    SV N 
Sbjct: 488 IEQFFRLLGEMWHDVTQWDSVTILNIIRMS-TFCGIKMVQESHGYSLRVGYTGDSSVANA 546

Query: 394 LISSYSKCGNVDLAYIVFE--------------------------EMGF----LRDVVSW 423
           ++ +Y+KCG +  A  +F                           EM F     +D+ +W
Sbjct: 547 ILDAYAKCGYLHDAETLFRSLAGRNIVTGNTMISCYLKNNCVEDAEMTFNHMAEKDLTTW 606

Query: 424 NTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
           N +   Y  N   + A  L+H++   G  PD+ +  +IL+AC H
Sbjct: 607 NLMSRLYAQNDLCDQAFCLFHQLQSEGLNPDTISITNILSACIH 650



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 114/413 (27%), Positives = 187/413 (45%), Gaps = 24/413 (5%)

Query: 137 LFNFFRGSGLVPNAVTMLTVIRGCVAL----GSRALCELIHGLTIKLGLILDVSVNNSVL 192
           L  +    GL PN + +   ++   AL    G  AL   +HGL +K+G      V  +V+
Sbjct: 77  LLRWMLARGLRPNRLALAAAVKSSSALPDCRGGAALGRCLHGLAVKVGYADGAVVAKAVM 136

Query: 193 DMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRI---IC 249
           DMY  +  L  A  +F EM C D +    ++          D   +FR M  S +   + 
Sbjct: 137 DMYGRIGSLADAHTVFDEMSCSDAVCRNILITASSRAGLYNDVFHLFRAMLASGVDESMP 196

Query: 250 DTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGD---LDSSR 306
             V +  ++ V A L  L+ G+ +H  V+  GL+ +    N++++MY+KCG    +D + 
Sbjct: 197 TAVTVAVVLPVCAKLRVLRAGRSIHGYVIKTGLEFDTLSGNALVSMYAKCGGSIAMDDAH 256

Query: 307 SVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT----DSVDSITLVSILTA 362
             F+ I  K +VSW +II+GY +NG   EAL  F +M  E+      ++ ++     L  
Sbjct: 257 LAFSTICCKDVVSWNSIIAGYSENGLFEEALALFGQMISEECLPNYSTLANVLPFCSLVE 316

Query: 363 SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFE--EMGFLRDV 420
            G     EI    HG     G     SV N L++ YSK   +     +F   +MG   D+
Sbjct: 317 YGRHYGKEI----HGFVVRHGLEMDISVSNALMAHYSKVCEMRAVESIFRSSKMG---DI 369

Query: 421 VSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQ 480
           V+WNT+I GY +N +   AL L+  +   G  PDS + +S+L AC   G    G+ +   
Sbjct: 370 VTWNTVIAGYVMNRYPSRALKLFQGLLFAGMAPDSVSLISLLTACAQVGNLRVGIRVHGY 429

Query: 481 MIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGC 533
           +    ++         +V   ++     DA+  +   ++      W A+LS C
Sbjct: 430 IFRHPELLQETSLMNALVSFYSQCDRF-DAAFRSFITIQNKDSVSWNAILSAC 481



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 114/500 (22%), Positives = 227/500 (45%), Gaps = 92/500 (18%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ L+++Y K  +++  E++F      ++V+W+ VI GY +N +  +++K F  ++ +G+
Sbjct: 341 SNALMAHYSKVCEMRAVESIFRSSKMGDIVTWNTVIAGYVMNRYPSRALKLFQGLLFAGM 400

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGL----------------MVKFGLESDLFEG-- 109
            P+S +++ +L A A + NL +   +HG                 +V F  + D F+   
Sbjct: 401 APDSVSLISLLTACAQVGNLRVGIRVHGYIFRHPELLQETSLMNALVSFYSQCDRFDAAF 460

Query: 110 -----LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLV------PNAVTMLTVIR 158
                ++N   VS NAI++   N++   +      FFR  G +       ++VT+L +IR
Sbjct: 461 RSFITIQNKDSVSWNAILSACANSEHHIE-----QFFRLLGEMWHDVTQWDSVTILNIIR 515

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMY----------------------- 195
                G + + E  HG ++++G   D SV N++LD Y                       
Sbjct: 516 MSTFCGIKMVQE-SHGYSLRVGYTGDSSVANAILDAYAKCGYLHDAETLFRSLAGRNIVT 574

Query: 196 -----SCLMD---LDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRI 247
                SC +    ++ A   F  M  KD+ +W  M  L+   +    A  +F +++   +
Sbjct: 575 GNTMISCYLKNNCVEDAEMTFNHMAEKDLTTWNLMSRLYAQNDLCDQAFCLFHQLQSEGL 634

Query: 248 ICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRS 307
             DT+++ N++S    L  ++  KQ H  ++   L+ ++ L  +++  YSKCG++ ++ +
Sbjct: 635 NPDTISITNILSACIHLSSVQLVKQCHGYMLRASLE-DIHLEGALLDAYSKCGNIANAYN 693

Query: 308 VFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELA 367
           +F     K LV +TA+I  Y  +G A +A+  F KM        D + L ++L+A     
Sbjct: 694 LFQVSLHKDLVIFTAMIGAYAMHGMAEKAVELFSKMLTLDIKP-DHVVLTALLSACS--- 749

Query: 368 ALEICLQLHGIAFEAGFPRYRSVQN------------CLISSYSKCGNVDLAYIVFEEM- 414
                   H    +AG   ++S++             C++   ++ G +  AY    +M 
Sbjct: 750 --------HAGLVDAGIKIFKSIREIYGVEPTEEHCACMVDLLARSGRLQDAYSFALDMP 801

Query: 415 GFLRDVVSWNTIIYGYGVNG 434
             + +  +W +++    V+G
Sbjct: 802 PHVVNANAWGSLLGACKVHG 821


>gi|115445617|ref|NP_001046588.1| Os02g0290000 [Oryza sativa Japonica Group]
 gi|47847947|dbj|BAD21737.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536119|dbj|BAF08502.1| Os02g0290000 [Oryza sativa Japonica Group]
          Length = 930

 Score =  234 bits (598), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 161/592 (27%), Positives = 293/592 (49%), Gaps = 62/592 (10%)

Query: 4   DPYNSSKLLSNYFKSG---KIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           D  + + L+S Y K G    + +A   F  I  K+VVSW+ +I GYS NG  E+++  F 
Sbjct: 232 DTLSGNALVSMYAKCGGSIAMDDAHLAFSTICCKDVVSWNSIIAGYSENGLFEEALALFG 291

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQ-NLELARSIHGLMVKFGLESD-------------- 105
            M+    LPN  T+  VL   + ++      + IHG +V+ GLE D              
Sbjct: 292 QMISEECLPNYSTLANVLPFCSLVEYGRHYGKEIHGFVVRHGLEMDISVSNALMAHYSKV 351

Query: 106 --------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
                   +F   K   +V+ N ++AG++ N+   +A+ LF     +G+ P++V++++++
Sbjct: 352 CEMRAVESIFRSSKMGDIVTWNTVIAGYVMNRYPSRALKLFQGLLFAGMAPDSVSLISLL 411

Query: 158 RGCVALGSRALCELIHGLTIKLG-LILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
             C  +G+  +   +HG   +   L+ + S+ N+++  YS     DAA + F  ++ KD 
Sbjct: 412 TACAQVGNLRVGIRVHGYIFRHPELLQETSLMNALVSFYSQCDRFDAAFRSFITIQNKDS 471

Query: 217 ISWTRMMGLFVDFEYAGDA-LKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
           +SW  ++    + E+  +   ++  EM       D+V +LN+I ++   G +K  ++ H 
Sbjct: 472 VSWNAILSACANSEHHIEQFFRLLGEMWHDVTQWDSVTILNIIRMSTFCG-IKMVQESHG 530

Query: 276 QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
             +  G   +  ++N+I+  Y+KCG L  + ++F  +  +++V+   +IS Y++N C  +
Sbjct: 531 YSLRVGYTGDSSVANAILDAYAKCGYLHDAETLFRSLAGRNIVTGNTMISCYLKNNCVED 590

Query: 336 ALNQFIKMRQEKTDS------------------------------VDSITLVSILTASGE 365
           A   F  M ++   +                               D+I++ +IL+A   
Sbjct: 591 AEMTFNHMAEKDLTTWNLMSRLYAQNDLCDQAFCLFHQLQSEGLNPDTISITNILSACIH 650

Query: 366 LAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNT 425
           L+++++  Q HG    A       ++  L+ +YSKCGN+  AY +F ++   +D+V +  
Sbjct: 651 LSSVQLVKQCHGYMLRASLEDIH-LEGALLDAYSKCGNIANAYNLF-QVSLHKDLVIFTA 708

Query: 426 IIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEEN 485
           +I  Y ++G  E A+ L+ KM      PD     ++L+AC HAGL + G+ IF  + E  
Sbjct: 709 MIGAYAMHGMAEKAVELFSKMLTLDIKPDHVVLTALLSACSHAGLVDAGIKIFKSIREIY 768

Query: 486 KVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG-MGPNIWRALLSGCVLH 536
            V+P++EH  C+VDLLAR+G L DA   A  +    +  N W +LL  C +H
Sbjct: 769 GVEPTEEHCACMVDLLARSGRLQDAYSFALDMPPHVVNANAWGSLLGACKVH 820



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 143/524 (27%), Positives = 252/524 (48%), Gaps = 69/524 (13%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           +  ++  Y + G + +A  +FDE+   + V  +I+I   S  G +      F  M+ SG+
Sbjct: 132 AKAVMDMYGRIGSLADAHTVFDEMSCSDAVCRNILITASSRAGLYNDVFHLFRAMLASGV 191

Query: 68  ---LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--------------- 109
              +P + T+  VL   A L+ L   RSIHG ++K GLE D   G               
Sbjct: 192 DESMPTAVTVAVVLPVCAKLRVLRAGRSIHGYVIKTGLEFDTLSGNALVSMYAKCGGSIA 251

Query: 110 LKNPYL----------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
           + + +L          VS N+I+AG+  N LF++A+ LF        +PN  T+  V+  
Sbjct: 252 MDDAHLAFSTICCKDVVSWNSIIAGYSENGLFEEALALFGQMISEECLPNYSTLANVLPF 311

Query: 160 C--VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
           C  V  G R   + IHG  ++ GL +D+SV+N+++  YS + ++ A   IFR  +  D++
Sbjct: 312 CSLVEYG-RHYGKEIHGFVVRHGLEMDISVSNALMAHYSKVCEMRAVESIFRSSKMGDIV 370

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           +W  ++  +V   Y   ALK+F+ +  + +  D+V+L++L++  A +G+L+ G ++H  +
Sbjct: 371 TWNTVIAGYVMNRYPSRALKLFQGLLFAGMAPDSVSLISLLTACAQVGNLRVGIRVHGYI 430

Query: 278 VLGG-LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
                L  E  L N++++ YS+C   D++   F  I  K  VSW AI+S       +   
Sbjct: 431 FRHPELLQETSLMNALVSFYSQCDRFDAAFRSFITIQNKDSVSWNAILSACAN---SEHH 487

Query: 337 LNQFIKMRQEKTDSV---DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC 393
           + QF ++  E    V   DS+T+++I+  S     +++  + HG +   G+    SV N 
Sbjct: 488 IEQFFRLLGEMWHDVTQWDSVTILNIIRMS-TFCGIKMVQESHGYSLRVGYTGDSSVANA 546

Query: 394 LISSYSKCGNVDLAYIVFE--------------------------EMGF----LRDVVSW 423
           ++ +Y+KCG +  A  +F                           EM F     +D+ +W
Sbjct: 547 ILDAYAKCGYLHDAETLFRSLAGRNIVTGNTMISCYLKNNCVEDAEMTFNHMAEKDLTTW 606

Query: 424 NTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
           N +   Y  N   + A  L+H++   G  PD+ +  +IL+AC H
Sbjct: 607 NLMSRLYAQNDLCDQAFCLFHQLQSEGLNPDTISITNILSACIH 650



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 114/413 (27%), Positives = 187/413 (45%), Gaps = 24/413 (5%)

Query: 137 LFNFFRGSGLVPNAVTMLTVIRGCVAL----GSRALCELIHGLTIKLGLILDVSVNNSVL 192
           L  +    GL PN + +   ++   AL    G  AL   +HGL +K+G      V  +V+
Sbjct: 77  LLRWMLARGLRPNRLALAAAVKSSSALPDCRGGAALGRCLHGLAVKVGYADGAVVAKAVM 136

Query: 193 DMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRI---IC 249
           DMY  +  L  A  +F EM C D +    ++          D   +FR M  S +   + 
Sbjct: 137 DMYGRIGSLADAHTVFDEMSCSDAVCRNILITASSRAGLYNDVFHLFRAMLASGVDESMP 196

Query: 250 DTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGD---LDSSR 306
             V +  ++ V A L  L+ G+ +H  V+  GL+ +    N++++MY+KCG    +D + 
Sbjct: 197 TAVTVAVVLPVCAKLRVLRAGRSIHGYVIKTGLEFDTLSGNALVSMYAKCGGSIAMDDAH 256

Query: 307 SVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT----DSVDSITLVSILTA 362
             F+ I  K +VSW +II+GY +NG   EAL  F +M  E+      ++ ++     L  
Sbjct: 257 LAFSTICCKDVVSWNSIIAGYSENGLFEEALALFGQMISEECLPNYSTLANVLPFCSLVE 316

Query: 363 SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFE--EMGFLRDV 420
            G     EI    HG     G     SV N L++ YSK   +     +F   +MG   D+
Sbjct: 317 YGRHYGKEI----HGFVVRHGLEMDISVSNALMAHYSKVCEMRAVESIFRSSKMG---DI 369

Query: 421 VSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQ 480
           V+WNT+I GY +N +   AL L+  +   G  PDS + +S+L AC   G    G+ +   
Sbjct: 370 VTWNTVIAGYVMNRYPSRALKLFQGLLFAGMAPDSVSLISLLTACAQVGNLRVGIRVHGY 429

Query: 481 MIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGC 533
           +    ++         +V   ++     DA+  +   ++      W A+LS C
Sbjct: 430 IFRHPELLQETSLMNALVSFYSQCDRF-DAAFRSFITIQNKDSVSWNAILSAC 481



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 114/500 (22%), Positives = 227/500 (45%), Gaps = 92/500 (18%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ L+++Y K  +++  E++F      ++V+W+ VI GY +N +  +++K F  ++ +G+
Sbjct: 341 SNALMAHYSKVCEMRAVESIFRSSKMGDIVTWNTVIAGYVMNRYPSRALKLFQGLLFAGM 400

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGL----------------MVKFGLESDLFEG-- 109
            P+S +++ +L A A + NL +   +HG                 +V F  + D F+   
Sbjct: 401 APDSVSLISLLTACAQVGNLRVGIRVHGYIFRHPELLQETSLMNALVSFYSQCDRFDAAF 460

Query: 110 -----LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLV------PNAVTMLTVIR 158
                ++N   VS NAI++   N++   +      FFR  G +       ++VT+L +IR
Sbjct: 461 RSFITIQNKDSVSWNAILSACANSEHHIE-----QFFRLLGEMWHDVTQWDSVTILNIIR 515

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMY----------------------- 195
                G + + E  HG ++++G   D SV N++LD Y                       
Sbjct: 516 MSTFCGIKMVQE-SHGYSLRVGYTGDSSVANAILDAYAKCGYLHDAETLFRSLAGRNIVT 574

Query: 196 -----SCLMD---LDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRI 247
                SC +    ++ A   F  M  KD+ +W  M  L+   +    A  +F +++   +
Sbjct: 575 GNTMISCYLKNNCVEDAEMTFNHMAEKDLTTWNLMSRLYAQNDLCDQAFCLFHQLQSEGL 634

Query: 248 ICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRS 307
             DT+++ N++S    L  ++  KQ H  ++   L+ ++ L  +++  YSKCG++ ++ +
Sbjct: 635 NPDTISITNILSACIHLSSVQLVKQCHGYMLRASLE-DIHLEGALLDAYSKCGNIANAYN 693

Query: 308 VFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELA 367
           +F     K LV +TA+I  Y  +G A +A+  F KM        D + L ++L+A     
Sbjct: 694 LFQVSLHKDLVIFTAMIGAYAMHGMAEKAVELFSKMLTLDIKP-DHVVLTALLSACS--- 749

Query: 368 ALEICLQLHGIAFEAGFPRYRSVQN------------CLISSYSKCGNVDLAYIVFEEM- 414
                   H    +AG   ++S++             C++   ++ G +  AY    +M 
Sbjct: 750 --------HAGLVDAGIKIFKSIREIYGVEPTEEHCACMVDLLARSGRLQDAYSFALDMP 801

Query: 415 GFLRDVVSWNTIIYGYGVNG 434
             + +  +W +++    V+G
Sbjct: 802 PHVVNANAWGSLLGACKVHG 821


>gi|242081959|ref|XP_002445748.1| hypothetical protein SORBIDRAFT_07g025050 [Sorghum bicolor]
 gi|241942098|gb|EES15243.1| hypothetical protein SORBIDRAFT_07g025050 [Sorghum bicolor]
          Length = 760

 Score =  234 bits (598), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 151/559 (27%), Positives = 271/559 (48%), Gaps = 32/559 (5%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ LL+ Y +    + A  LFD +P ++VV+W+ +I GY+  G    ++ AF      G 
Sbjct: 13  SNNLLAAYVRCADTRSARLLFDGMPRRDVVTWNTLIAGYATQGSARSALGAFRDARRDGA 72

Query: 68  LP-NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF------------------- 107
           +  + FT   VL A  G  +    R+ HGL V  GL    F                   
Sbjct: 73  VAVDRFTYAAVLAACGGAGDWRSGRAAHGLAVVSGLARTAFVSNSVIDMYAKCRMIDEVR 132

Query: 108 ---EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL- 163
              +  +    VS N +++ ++     + A  +  +   SG+  +A  +  +++ C  L 
Sbjct: 133 LAFDRAEERDEVSWNLLLSAYVRMGWPEVAANVLVWMHRSGVELDAFALGGILKACSELE 192

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
            S  +  ++HG  IK+GL LDV V ++++DMY+    L+ AI++F  +  ++V+ +  M+
Sbjct: 193 DSEDVRRMLHGCVIKVGLDLDVFVGSTMVDMYAKNGGLEEAIKVFGSIPSQNVVIYNTMI 252

Query: 224 GLFVDF------EYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
             F         E   +A++I+  M + RI        +++ V  +   ++  +Q+HA V
Sbjct: 253 AGFARLGNDPCPEIRMEAVRIYSNMFRRRIRPSKFTFKSVLEVCNLTNAVRCWRQIHAHV 312

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           +L G + +  + N++I +YSK   +D S   F++  ++ + +WT++I+ +V+N  + +AL
Sbjct: 313 ILFGFEDDEFIGNALINLYSKARLVDDSLRCFHRTPKQEIFTWTSMITAFVRNEHSDKAL 372

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
           N F  +R    +  D  T+ S++ A  +L+    C Q+H  A ++GF R+    N  I  
Sbjct: 373 NLFKGLRYTGVEP-DQFTMSSVMNACADLSMPIACEQIHCYAVKSGFDRFTLCGNSQIEM 431

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           Y   G++  A   FE +  L D  SW+ +I  Y V+GH   AL L+ KM +   + +   
Sbjct: 432 YRCTGDLKAAKKTFERIPSL-DTFSWSQMILSYAVHGHEREALLLFKKMRDCSVIINEFA 490

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL 517
           +L++L AC H GL ++G   +  M+ +    P  +H  C+VDLL   G ++DA       
Sbjct: 491 FLAVLVACSHQGLIDEGFRHYESMVSDYSFVPDVKHIACMVDLLGHVGKVADAEDFINSS 550

Query: 518 LEGMGPNIWRALLSGCVLH 536
                  +W  LL  C +H
Sbjct: 551 GLENDSVLWHTLLRACRIH 569



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 126/525 (24%), Positives = 228/525 (43%), Gaps = 56/525 (10%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ ++  Y K   I E    FD   E++ VSW++++  Y   G+ E +      M  SG+
Sbjct: 115 SNSVIDMYAKCRMIDEVRLAFDRAEERDEVSWNLLLSAYVRMGWPEVAANVLVWMHRSGV 174

Query: 68  LPNSFTMVGVLVAAAGLQNLE-LARSIHGLMVKFGLESDLFEG----------------- 109
             ++F + G+L A + L++ E + R +HG ++K GL+ D+F G                 
Sbjct: 175 ELDAFALGGILKACSELEDSEDVRRMLHGCVIKVGLDLDVFVGSTMVDMYAKNGGLEEAI 234

Query: 110 -----LKNPYLVSCNAIVAGFIN------NKLFQQAVLLF-NFFRGSGLVPNAVTMLTVI 157
                + +  +V  N ++AGF         ++  +AV ++ N FR   + P+  T  +V+
Sbjct: 235 KVFGSIPSQNVVIYNTMIAGFARLGNDPCPEIRMEAVRIYSNMFRRR-IRPSKFTFKSVL 293

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
             C    +      IH   I  G   D  + N+++++YS    +D +++ F     +++ 
Sbjct: 294 EVCNLTNAVRCWRQIHAHVILFGFEDDEFIGNALINLYSKARLVDDSLRCFHRTPKQEIF 353

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           +WT M+  FV  E++  AL +F+ +R + +  D   + ++++  A L      +Q+H   
Sbjct: 354 TWTSMITAFVRNEHSDKALNLFKGLRYTGVEPDQFTMSSVMNACADLSMPIACEQIHCYA 413

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           V  G        NS I MY   GDL +++  F +I      SW+ +I  Y  +G  REAL
Sbjct: 414 VKSGFDRFTLCGNSQIEMYRCTGDLKAAKKTFERIPSLDTFSWSQMILSYAVHGHEREAL 473

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN----- 392
             F KMR + +  ++    +++L A             H    + GF  Y S+ +     
Sbjct: 474 LLFKKMR-DCSVIINEFAFLAVLVACS-----------HQGLIDEGFRHYESMVSDYSFV 521

Query: 393 -------CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHK 445
                  C++      G V  A       G   D V W+T++    ++G  +  +    K
Sbjct: 522 PDVKHIACMVDLLGHVGKVADAEDFINSSGLENDSVLWHTLLRACRIHGDKDRGIKTGEK 581

Query: 446 MTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPS 490
           +  T E   +S+Y+ + N    AG  +  +    QM E    K S
Sbjct: 582 LM-TLEPFAASSYVMLYNLYMDAGKISLAMRTRGQMRERGMTKES 625



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 141/304 (46%), Gaps = 28/304 (9%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSING------FHEKSM 56
           +D +  S ++  Y K+G ++EA  +F  IP +NVV ++ +I G++  G         +++
Sbjct: 212 LDVFVGSTMVDMYAKNGGLEEAIKVFGSIPSQNVVIYNTMIAGFARLGNDPCPEIRMEAV 271

Query: 57  KAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPY 114
           + +S+M    + P+ FT   VL        +   R IH  ++ FG E D F G  L N Y
Sbjct: 272 RIYSNMFRRRIRPSKFTFKSVLEVCNLTNAVRCWRQIHAHVILFGFEDDEFIGNALINLY 331

Query: 115 --------------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTML 154
                               + +  +++  F+ N+   +A+ LF   R +G+ P+  TM 
Sbjct: 332 SKARLVDDSLRCFHRTPKQEIFTWTSMITAFVRNEHSDKALNLFKGLRYTGVEPDQFTMS 391

Query: 155 TVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
           +V+  C  L     CE IH   +K G        NS ++MY C  DL AA + F  +   
Sbjct: 392 SVMNACADLSMPIACEQIHCYAVKSGFDRFTLCGNSQIEMYRCTGDLKAAKKTFERIPSL 451

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
           D  SW++M+  +    +  +AL +F++MR   +I +  A L ++   +  G +  G + +
Sbjct: 452 DTFSWSQMILSYAVHGHEREALLLFKKMRDCSVIINEFAFLAVLVACSHQGLIDEGFRHY 511

Query: 275 AQVV 278
             +V
Sbjct: 512 ESMV 515



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 142/304 (46%), Gaps = 13/304 (4%)

Query: 177 IKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDAL 236
           I+ G    + ++N++L  Y    D  +A  +F  M  +DV++W  ++  +     A  AL
Sbjct: 2   IRAGYRPGLFLSNNLLAAYVRCADTRSARLLFDGMPRRDVVTWNTLIAGYATQGSARSAL 61

Query: 237 KIFREMRKS-RIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAM 295
             FR+ R+   +  D      +++     GD + G+  H   V+ GL     +SNS+I M
Sbjct: 62  GAFRDARRDGAVAVDRFTYAAVLAACGGAGDWRSGRAAHGLAVVSGLARTAFVSNSVIDM 121

Query: 296 YSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSIT 355
           Y+KC  +D  R  F++  E+  VSW  ++S YV+ G    A N  + M +   + +D+  
Sbjct: 122 YAKCRMIDEVRLAFDRAEERDEVSWNLLLSAYVRMGWPEVAANVLVWMHRSGVE-LDAFA 180

Query: 356 LVSILTASGELAALE-ICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM 414
           L  IL A  EL   E +   LHG   + G      V + ++  Y+K G ++ A  VF  +
Sbjct: 181 LGGILKACSELEDSEDVRRMLHGCVIKVGLDLDVFVGSTMVDMYAKNGGLEEAIKVFGSI 240

Query: 415 GFLRDVVSWNTIIYGYGVNGHGE------TALALYHKMTETGEVPDSSTYLSILNACGHA 468
              ++VV +NT+I G+   G+         A+ +Y  M      P   T+ S+L  C   
Sbjct: 241 P-SQNVVIYNTMIAGFARLGNDPCPEIRMEAVRIYSNMFRRRIRPSKFTFKSVLEVC--- 296

Query: 469 GLTN 472
            LTN
Sbjct: 297 NLTN 300



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 93/189 (49%), Gaps = 1/189 (0%)

Query: 277 VVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
           ++  G +  L LSN+++A Y +C D  S+R +F+ +  + +V+W  +I+GY   G AR A
Sbjct: 1   MIRAGYRPGLFLSNNLLAAYVRCADTRSARLLFDGMPRRDVVTWNTLIAGYATQGSARSA 60

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
           L  F   R++   +VD  T  ++L A G           HG+A  +G  R   V N +I 
Sbjct: 61  LGAFRDARRDGAVAVDRFTYAAVLAACGGAGDWRSGRAAHGLAVVSGLARTAFVSNSVID 120

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
            Y+KC  +D   + F+     RD VSWN ++  Y   G  E A  +   M  +G   D+ 
Sbjct: 121 MYAKCRMIDEVRLAFDR-AEERDEVSWNLLLSAYVRMGWPEVAANVLVWMHRSGVELDAF 179

Query: 457 TYLSILNAC 465
               IL AC
Sbjct: 180 ALGGILKAC 188


>gi|224137432|ref|XP_002322556.1| predicted protein [Populus trichocarpa]
 gi|222867186|gb|EEF04317.1| predicted protein [Populus trichocarpa]
          Length = 702

 Score =  234 bits (598), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 170/607 (28%), Positives = 293/607 (48%), Gaps = 93/607 (15%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           YNS  ++S Y K+G+I  A NLFD++P +N+VSW+ ++ GY  NG  +++ K F  M   
Sbjct: 9   YNS--MISVYAKNGRINAARNLFDKMPRRNLVSWNTMVSGYLHNGKFDEAYKLFVIMPRR 66

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLM------------------VKFGLESD-- 105
            L   S+T++       G   +E AR +   +                  VK G  ++  
Sbjct: 67  DLF--SWTLMITCYTRNG--EVEKARELFDSLPCSYRKGVACWNAMISGYVKKGRVNEAK 122

Query: 106 -LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFN------------------------- 139
            LF+ +    L+S N+++AG+  N+  +  +  FN                         
Sbjct: 123 RLFDEMPVKNLISWNSMLAGYTQNRKMRLGLEFFNEMDERDVVSWNLMVDGFIQVGDLDS 182

Query: 140 ---FFRGSGLVPNAVTMLTVIRGCVALG----SRALCELIHGLTIKLGLILDVSVNNSVL 192
              FF+ +   PN V+ +T++ G    G    SR L + +    I       VS N +++
Sbjct: 183 AWKFFQETQ-KPNVVSWVTMLSGFARNGNILESRRLFDQMPSRNI-------VSWN-AMI 233

Query: 193 DMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREM---------- 242
             Y    ++D A ++F EM  +D +SWT M+  +V      +A ++  EM          
Sbjct: 234 SAYVQRCEIDEASRLFEEMPERDSVSWTTMINGYVRIGKLDEARELLNEMPYRNIGAQTA 293

Query: 243 -----------RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG--LQSELRLS 289
                       ++R   D +   +++  NA++       +++  + L    +  ++   
Sbjct: 294 MISGYIQCNKVDEARRFFDEIGTWDVVCWNAMIAGYAHHGRINEALCLSKRMVNKDMVTW 353

Query: 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD 349
           N++I+ Y++ G +D +  +F ++ E+ LVSW ++I+G++ NG   +AL  F  M  E   
Sbjct: 354 NTMISCYAQVGQMDRAVKIFEEMGERDLVSWNSLIAGFMLNGQNLDALKSFALMGHEGKK 413

Query: 350 SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYI 409
             D ++    L++   +AAL++  QLH +  + G+  Y  V N LI+ Y+KCG +  A +
Sbjct: 414 P-DQLSFACGLSSCATIAALQVGNQLHQVVVKGGYLNYLVVNNALITMYAKCGRILEAGL 472

Query: 410 VFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAG 469
           VF  +    DV+SWN++I GY +NG+G+ AL L+ +M   G  PD  T++ IL+AC HAG
Sbjct: 473 VFNGICHA-DVISWNSLIGGYAINGYGKEALKLFEEMASEGMAPDEVTFIGILSACNHAG 531

Query: 470 LTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRAL 529
           + + GL +F  M +   ++P  EHY C+VDLL R G L +A  +   +       +W AL
Sbjct: 532 MVDHGLKLFKCMSKVYAIEPLAEHYACMVDLLGRVGRLDEAFEIVRGMKVKATAGVWGAL 591

Query: 530 LSGCVLH 536
           L  C  H
Sbjct: 592 LGACRAH 598



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 127/537 (23%), Positives = 222/537 (41%), Gaps = 81/537 (15%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM-------- 62
           ++S Y K G++ EA+ LFDE+P KN++SW+ ++ GY+ N      ++ F+ M        
Sbjct: 108 MISGYVKKGRVNEAKRLFDEMPVKNLISWNSMLAGYTQNRKMRLGLEFFNEMDERDVVSW 167

Query: 63  --MLSGLL-----------------PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL- 102
             M+ G +                 PN  + V +L   A   N+  +R +   M    + 
Sbjct: 168 NLMVDGFIQVGDLDSAWKFFQETQKPNVVSWVTMLSGFARNGNILESRRLFDQMPSRNIV 227

Query: 103 -----------------ESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSG 145
                             S LFE +     VS   ++ G++      +A  L N      
Sbjct: 228 SWNAMISAYVQRCEIDEASRLFEEMPERDSVSWTTMINGYVRIGKLDEARELLNEMPYRN 287

Query: 146 LVPNAVTMLTVIRGCVALGSRALCELI----------------HGLTIKLGLIL------ 183
           +      +   I+      +R   + I                H   I   L L      
Sbjct: 288 IGAQTAMISGYIQCNKVDEARRFFDEIGTWDVVCWNAMIAGYAHHGRINEALCLSKRMVN 347

Query: 184 -DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREM 242
            D+   N+++  Y+ +  +D A++IF EM  +D++SW  ++  F+      DALK F  M
Sbjct: 348 KDMVTWNTMISCYAQVGQMDRAVKIFEEMGERDLVSWNSLIAGFMLNGQNLDALKSFALM 407

Query: 243 RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDL 302
                  D ++    +S  A +  L+ G QLH  VV GG  + L ++N++I MY+KCG +
Sbjct: 408 GHEGKKPDQLSFACGLSSCATIAALQVGNQLHQVVVKGGYLNYLVVNNALITMYAKCGRI 467

Query: 303 DSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTA 362
             +  VFN I    ++SW ++I GY  NG  +EAL  F +M  E   + D +T + IL+A
Sbjct: 468 LEAGLVFNGICHADVISWNSLIGGYAINGYGKEALKLFEEMASEGM-APDEVTFIGILSA 526

Query: 363 SGELAALEICLQLHGIAFEAGFPRYRSVQN------CLISSYSKCGNVDLAYIVFEEMGF 416
                 ++     HG+       +  +++       C++    + G +D A+ +   M  
Sbjct: 527 CNHAGMVD-----HGLKLFKCMSKVYAIEPLAEHYACMVDLLGRVGRLDEAFEIVRGMKV 581

Query: 417 LRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTND 473
                 W  ++     +G+ E      HK++E  E   +S Y+ + N    A   N+
Sbjct: 582 KATAGVWGALLGACRAHGNLELGRLAAHKLSEF-EPHKTSNYVLLSNIHAEANRWNE 637



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 102/231 (44%), Gaps = 37/231 (16%)

Query: 312 ITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEI 371
           + EK+ V++ ++IS Y +NG    A N F KM   + + V   T+VS    +G+    + 
Sbjct: 1   MAEKNTVTYNSMISVYAKNGRINAARNLFDKM--PRRNLVSWNTMVSGYLHNGK---FDE 55

Query: 372 CLQLHGIAFEAGFPRYRSVQ-NCLISSYSKCGNVDLAYIVFEEM--GFLRDVVSWNTIIY 428
             +L  I      PR        +I+ Y++ G V+ A  +F+ +   + + V  WN +I 
Sbjct: 56  AYKLFVI-----MPRRDLFSWTLMITCYTRNGEVEKARELFDSLPCSYRKGVACWNAMIS 110

Query: 429 GYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTND-----GLVIFNQMIE 483
           GY   G    A  L+ +M     V +  ++ S+L     AG T +     GL  FN+M E
Sbjct: 111 GYVKKGRVNEAKRLFDEMP----VKNLISWNSML-----AGYTQNRKMRLGLEFFNEMDE 161

Query: 484 ENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI--WRALLSG 532
            + V      +  +VD   + G L  A        E   PN+  W  +LSG
Sbjct: 162 RDVVS-----WNLMVDGFIQVGDLDSAWKF---FQETQKPNVVSWVTMLSG 204


>gi|356540844|ref|XP_003538894.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 748

 Score =  234 bits (598), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 161/573 (28%), Positives = 276/573 (48%), Gaps = 65/573 (11%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEK-NVVSWSIVIHGYSINGFHEKSMKAF 59
           P  D ++ + +++ Y + GK+++A  L + +P+K +   W+ +I GY+  G    + K F
Sbjct: 106 PERDNFSWALMITCYTRKGKLEKARELLELVPDKLDTACWNAMIAGYAKKGQFNDAKKVF 165

Query: 60  SHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCN 119
             M    L+  +  + G        QN            K  L    FE +    +VS N
Sbjct: 166 EQMPAKDLVSYNSMLAGY------TQN-----------GKMHLALQFFESMTERNVVSWN 208

Query: 120 AIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALC-ELIHGLTIK 178
            +VAG++ +     A  LF         PNAV+ +T++ G    G  A   EL   +  K
Sbjct: 209 LMVAGYVKSGDLSSAWQLFEKIPN----PNAVSWVTMLCGLAKYGKMAEARELFDRMPSK 264

Query: 179 LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKI 238
                +V   N+++  Y   + +D A+++F++M  KD +SWT ++  ++      +A ++
Sbjct: 265 -----NVVSWNAMIATYVQDLQVDEAVKLFKKMPHKDSVSWTTIINGYIRVGKLDEARQV 319

Query: 239 FREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV----------VLGGLQSELRL 288
           + +M    I   T  +  LI      G +    Q+ +++          ++ G     R+
Sbjct: 320 YNQMPCKDITAQTALMSGLIQN----GRIDEADQMFSRIGAHDVVCWNSMIAGYSRSGRM 375

Query: 289 S-----------------NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNG 331
                             N++I+ Y++ G +D +  +F  + EK++VSW ++I+G++QN 
Sbjct: 376 DEALNLFRQMPIKNSVSWNTMISGYAQAGQMDRATEIFQAMREKNIVSWNSLIAGFLQNN 435

Query: 332 CAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ 391
              +AL   + M +E     D  T    L+A   LAAL++  QLH    ++G+     V 
Sbjct: 436 LYLDALKSLVMMGKEGKKP-DQSTFACTLSACANLAALQVGNQLHEYILKSGYMNDLFVG 494

Query: 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE 451
           N LI+ Y+KCG V  A  VF ++  + D++SWN++I GY +NG+   A   + +M+    
Sbjct: 495 NALIAMYAKCGRVQSAEQVFRDIECV-DLISWNSLISGYALNGYANKAFKAFEQMSSERV 553

Query: 452 VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDAS 511
           VPD  T++ +L+AC HAGL N GL IF  MIE+  ++P  EHY C+VDLL R G L +A 
Sbjct: 554 VPDEVTFIGMLSACSHAGLANQGLDIFKCMIEDFAIEPLAEHYSCLVDLLGRVGRLEEAF 613

Query: 512 GLAGKLLEGMGPNIWRALLSGCVLH----VGRF 540
                +       +W +LL  C +H    +GRF
Sbjct: 614 NTVRGMKVKANAGLWGSLLGACRVHKNLELGRF 646



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 145/294 (49%), Gaps = 23/294 (7%)

Query: 189 NSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRII 248
           NS++ + +    +  A Q+F +M  ++++SW  M+  ++      +A ++F  M +    
Sbjct: 52  NSMISVLAKNARIRDARQLFDQMSLRNLVSWNTMIAGYLHNNMVEEASELFDVMPER--- 108

Query: 249 CDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSV 308
            D  +   +I+     G L++ ++L  ++V   L +     N++IA Y+K G  + ++ V
Sbjct: 109 -DNFSWALMITCYTRKGKLEKAREL-LELVPDKLDTAC--WNAMIAGYAKKGQFNDAKKV 164

Query: 309 FNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAA 368
           F Q+  K LVS+ ++++GY QNG    AL  F  M +    S +   +V+    SG+L++
Sbjct: 165 FEQMPAKDLVSYNSMLAGYTQNGKMHLALQFFESMTERNVVSWN--LMVAGYVKSGDLSS 222

Query: 369 LEICLQLHGIAFEAGFPRYRSVQN-CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
                QL    FE   P   +V    ++   +K G +  A  +F+ M   ++VVSWN +I
Sbjct: 223 ---AWQL----FEK-IPNPNAVSWVTMLCGLAKYGKMAEARELFDRMPS-KNVVSWNAMI 273

Query: 428 YGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQM 481
             Y  +   + A+ L+ KM       DS ++ +I+N     G  ++   ++NQM
Sbjct: 274 ATYVQDLQVDEAVKLFKKMPHK----DSVSWTTIINGYIRVGKLDEARQVYNQM 323


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  234 bits (598), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 167/601 (27%), Positives = 284/601 (47%), Gaps = 107/601 (17%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  D  + + ++S   +   ++ A  LFD++PE++VVSW+ ++ GY+ NG+ +++ + F 
Sbjct: 107 PTRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFD 166

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNA 120
            M       NS +  G+L A      +E AR              LFE   +  L+S N 
Sbjct: 167 EMPCK----NSISWNGMLAAYVQNGRIEDARR-------------LFESKADWELISWNC 209

Query: 121 IVAGFINNKLFQQAVLLFNFFRGSGLVP--NAVTMLTVIRGCVALGSRALCELIHGLTIK 178
           ++ G++       A  +F+       +P  + V+  T+I G    G              
Sbjct: 210 MMGGYVKRNRLVDARGIFD------RMPERDEVSWNTMISGYAQNG-------------- 249

Query: 179 LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKI 238
                                +L  A ++F E   +DV +WT M+  +V      +A ++
Sbjct: 250 ---------------------ELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRV 288

Query: 239 FREMRKSRIICDTVALLNLISVNAILGDLKRGKQL-HAQVVLGGLQSE-LRLSNSIIAMY 296
           F          D +   N +S NAI+    + K++  A+ +   +  + +   N++I  Y
Sbjct: 289 F----------DGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGY 338

Query: 297 SKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITL 356
           ++ GD+  +R+ F+++ ++  +SW AII+GY Q+G   EAL+ F++M+++  + ++  T 
Sbjct: 339 AQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRD-GERLNRSTF 397

Query: 357 VSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGF 416
            S L+   E+AALE+  Q+HG   +AG      V N L+  Y KCGN+D AYIVFE +  
Sbjct: 398 TSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIE- 456

Query: 417 LRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLV 476
            ++VVSWNT+I GY  +G G+ AL L+  M +TG +PD  T + +L+AC H GL + G  
Sbjct: 457 EKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTE 516

Query: 477 IFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
            F  M ++  +  + +HY C++DLL RAG L DA  L   +        W ALL    +H
Sbjct: 517 YFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIH 576

Query: 537 ---------------------------------VGRFQDAEALRSGSQKKGIIKIPGISF 563
                                             GR+ D   +R   + +G+ K+PG S+
Sbjct: 577 GNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSW 636

Query: 564 L 564
           +
Sbjct: 637 V 637



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 126/545 (23%), Positives = 229/545 (42%), Gaps = 97/545 (17%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVI--------------------------- 43
           ++S    + K   A  LF+++P +++VSW+++I                           
Sbjct: 86  MISGCLSNDKFYLARQLFEKMPTRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSW 145

Query: 44  ----HGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK 99
                GY+ NG+ +++ + F  M       NS +  G+L A      +E AR +      
Sbjct: 146 NAMLSGYAQNGYVKEAKEIFDEMPCK----NSISWNGMLAAYVQNGRIEDARRLFESKAD 201

Query: 100 FGLES------------------DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLF--- 138
           + L S                   +F+ +     VS N +++G+  N    +A  LF   
Sbjct: 202 WELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEES 261

Query: 139 ---NFFRGSGLV---------------------PNAVTMLTVIRGCVALGSRALC-ELIH 173
              + F  + +V                      N+V+   +I G V         EL  
Sbjct: 262 PVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFE 321

Query: 174 GLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAG 233
            +  +     +VS  N+++  Y+   D+  A   F  M  +D ISW  ++  +    Y  
Sbjct: 322 AMPCQ-----NVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGE 376

Query: 234 DALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSII 293
           +AL +F EM++     +     + +S  A +  L+ GKQ+H +VV  GL+S   + N+++
Sbjct: 377 EALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALL 436

Query: 294 AMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV-D 352
            MY KCG++D +  VF  I EK +VSW  +I+GY ++G  +EAL  F  M+  KT  + D
Sbjct: 437 VMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMK--KTGILPD 494

Query: 353 SITLVSILTASGELAALEICLQ-LHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVF 411
            +T+V +L+A      ++   +  + +  + G         C+I    + G +D A  + 
Sbjct: 495 DVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLM 554

Query: 412 EEMGFLRDVVSWNTIIYGYGVNGH---GETALALYHKMTETGEVPDSSTYLSILNACGHA 468
           + M F  D  +W  ++    ++G+   GE A  +  +M    E  +S  Y+ + N    +
Sbjct: 555 KNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEM----EPDNSGMYVLLSNLYAAS 610

Query: 469 GLTND 473
           G   D
Sbjct: 611 GRWGD 615



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 146/350 (41%), Gaps = 95/350 (27%)

Query: 202 DAAIQIFREMECKDVISWTRMMG--LFVDFEYAGDAL--KI-----------------FR 240
           D+A+++F  M  +  ISW  M+   L  D  Y    L  K+                 +R
Sbjct: 66  DSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKMPTRDLVSWNVMISGCVRYR 125

Query: 241 EMRKSRIICDTVALLNLISVNAIL------GDLKRGKQ----------------LHAQVV 278
            +R +R++ D +   +++S NA+L      G +K  K+                L A V 
Sbjct: 126 NLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQ 185

Query: 279 LGGLQSELRL-----------SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGY 327
            G ++   RL            N ++  Y K   L  +R +F+++ E+  VSW  +ISGY
Sbjct: 186 NGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGY 245

Query: 328 VQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRY 387
            QNG   EA   F     E++   D  T  ++++   +   L+   ++    F+ G P  
Sbjct: 246 AQNGELLEAQRLF-----EESPVRDVFTWTAMVSGYVQNGMLDEARRV----FD-GMPEK 295

Query: 388 RSVQ-NCLISSYSKCGNVDLAYIVFEEM-------------GFL---------------- 417
            SV  N +I+ Y +C  +D A  +FE M             G+                 
Sbjct: 296 NSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMP 355

Query: 418 -RDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
            RD +SW  II GY  +G+GE AL L+ +M   GE  + ST+ S L+ C 
Sbjct: 356 QRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCA 405



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 112/264 (42%), Gaps = 27/264 (10%)

Query: 269 RGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYV 328
           R +QLH++  L  LQ+             K    +  ++  +  T+  +V W   I+ ++
Sbjct: 8   RFRQLHSRSCLRSLQT-------TTTANRKPSTRNQPKTTSSLATDADIVKWNIAITNHM 60

Query: 329 QNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYR 388
           +NG    AL  F  M +       SI+  ++++         +  QL    FE    R  
Sbjct: 61  RNGQCDSALRLFNSMPRRS-----SISWNAMISGCLSNDKFYLARQL----FEKMPTRDL 111

Query: 389 SVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTE 448
              N +IS   +  N+  A ++F++M   RDVVSWN ++ GY  NG+ + A  ++ +M  
Sbjct: 112 VSWNVMISGCVRYRNLRAARLLFDQMP-ERDVVSWNAMLSGYAQNGYVKEAKEIFDEMP- 169

Query: 449 TGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLS 508
                +S ++  +L A    G   D   +F     E+K       + C++    +   L 
Sbjct: 170 ---CKNSISWNGMLAAYVQNGRIEDARRLF-----ESKADWELISWNCMMGGYVKRNRLV 221

Query: 509 DASGLAGKLLEGMGPNIWRALLSG 532
           DA G+  ++ E      W  ++SG
Sbjct: 222 DARGIFDRMPE-RDEVSWNTMISG 244


>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 617

 Score =  234 bits (598), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 147/492 (29%), Positives = 249/492 (50%), Gaps = 37/492 (7%)

Query: 106 LFEGLKNPYLVSCNAIVAGF-INNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
           L   L+ P L   NAI+ G   +N    + ++++      G+VP+  T+  V++ C    
Sbjct: 80  LLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESR 139

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
           +    E +HG  IK+GL  DV V+N+++ MY+    + +A ++F     +D++SWT M+ 
Sbjct: 140 AVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQ 199

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG-LQ 283
            +V   +A + + +F EM    +  D + L+ ++S  A LGDL+ G++LH  ++    + 
Sbjct: 200 GYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVN 259

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
            ++ + N+++ MY KCGD + +R VF ++  K++VSW ++ISG  Q G  +E+L  F KM
Sbjct: 260 LDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKM 319

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
           ++      D +TLV++L +   L  LE+   +H             + N L+  Y+KCG+
Sbjct: 320 QRLGVKP-DDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGS 378

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           +D A  VF+ M   +DV S+  +I G  ++G G  AL L+ +M + G  PD  T++ +L 
Sbjct: 379 IDQACWVFQAMN-RKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLT 437

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
           AC H GL  +G   F  M     ++P  EHYGC+VDLL RAG +++A      +      
Sbjct: 438 ACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDA 497

Query: 524 NIWRALLSGCVLH---------------------------------VGRFQDAEALRSGS 550
            +  ALL  C +H                                   R++DA  LR   
Sbjct: 498 FVLGALLGACKIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTM 557

Query: 551 QKKGIIKIPGIS 562
           +++ + K PG S
Sbjct: 558 KERNLEKTPGCS 569



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 120/497 (24%), Positives = 226/497 (45%), Gaps = 43/497 (8%)

Query: 22  KEAENLFDEIPEKNVVSWSIVIHGYSI-NGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVA 80
           + A +L  ++   N+  ++ +I G +  N    + +  +  M+  G++P+++T+  VL A
Sbjct: 75  RYALSLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKA 134

Query: 81  AAGLQNLELARSIHGLMVKFGLESDL----------------------FEGLKNPYLVSC 118
            A  + +     +HG  +K GL SD+                      F+      LVS 
Sbjct: 135 CAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSW 194

Query: 119 NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIK 178
             ++ G++     ++ V LF    G  L  + +T++ V+  C  LG   L   +H   I+
Sbjct: 195 TTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIR 254

Query: 179 LGLI-LDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALK 237
              + LDV V N+++DMY    D + A ++F+EM  K+V+SW  M+          ++L 
Sbjct: 255 NSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLY 314

Query: 238 IFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYS 297
           +FR+M++  +  D V L+ +++  A LG L+ GK +HA +    ++++  + N+++ MY+
Sbjct: 315 MFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYA 374

Query: 298 KCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLV 357
           KCG +D +  VF  +  K + S+TA+I G   +G   +AL+ F +M +   +  D +T V
Sbjct: 375 KCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEP-DEVTFV 433

Query: 358 SILTASGELAALEICLQLHGIAFEAGFPRYRSVQN---------CLISSYSKCGNVDLAY 408
            +LTA   +  +E      G  +   F    ++ N         C++    + G ++ A 
Sbjct: 434 GVLTACSHVGLVE-----EGRKY---FEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAE 485

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
                M    D      ++    ++G  E   ++  K+ E  E      Y+ + N    A
Sbjct: 486 EFIRNMPIEPDAFVLGALLGACKIHGKVELGESVMKKI-EKIEPRKDGAYVLMSNIYSSA 544

Query: 469 GLTNDGLVIFNQMIEEN 485
               D L +   M E N
Sbjct: 545 NRWRDALKLRKTMKERN 561



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 143/292 (48%), Gaps = 23/292 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y S+ L+  Y     I+ A  +FD  P++++VSW+ +I GY   GF  + +  F  M 
Sbjct: 159 DVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLFFEMC 218

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK-FGLESDLFEG--LKNPYL----- 115
              L  +  T+V VL + A L +L L R +H  +++   +  D+F G  L + YL     
Sbjct: 219 GENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDA 278

Query: 116 ---------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                          VS N++++G      F++++ +F   +  G+ P+ VT++ V+  C
Sbjct: 279 NFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSC 338

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             LG   L + +H    +  +  D  + N+++DMY+    +D A  +F+ M  KDV S+T
Sbjct: 339 ANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYT 398

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQ 272
            M+         G AL +F EM K  I  D V  + +++  + +G ++ G++
Sbjct: 399 AMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRK 450



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 102/232 (43%), Gaps = 28/232 (12%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  + L+  Y K G    A  +F E+P KNVVSW+ +I G +  G  ++S+  F  M
Sbjct: 260 LDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKM 319

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
              G+ P+  T+V VL + A L  LEL + +H  + +  + +D                 
Sbjct: 320 QRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSI 379

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +F+ +    + S  A++ G   +    +A+ LF+     G+ P+ VT + V+  C
Sbjct: 380 DQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTAC 439

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME 212
             +G   L E        +  I ++      L+ Y C++DL     +  E E
Sbjct: 440 SHVG---LVEEGRKYFEDMSTIYNLRPQ---LEHYGCMVDLLGRAGLINEAE 485


>gi|147773389|emb|CAN64573.1| hypothetical protein VITISV_010383 [Vitis vinifera]
          Length = 672

 Score =  234 bits (598), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 175/589 (29%), Positives = 302/589 (51%), Gaps = 45/589 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + LLS Y   G +++A  +FDE+PEK++VSW+ +I  +S+NG   + +  F  M 
Sbjct: 75  DVFVGNTLLSFYGNCGGLRDAGRVFDEMPEKDLVSWNTMIGVFSVNGCWXEVLDLFGEMR 134

Query: 64  L-SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG------------- 109
           L SGL PN  ++V VL   AG+++   A  IHG +VK GLE  +  G             
Sbjct: 135 LRSGLRPNVVSVVSVLPVCAGVEDEVTASEIHGYVVKVGLEFQVIVGNALLDVYGKCGNV 194

Query: 110 --LKNPY-------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
             LK  +       LVS NAI+  F     ++ A+ +F      GL PN++T+ + +   
Sbjct: 195 AALKQVFGEMVEKNLVSWNAIITSFGYKGHYRDALDMFRLMIDEGLKPNSITISSFLPVL 254

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
           V L        +HG +I++GL  D+ + NS++DMY+       A  +F +++ K+V+SW 
Sbjct: 255 VELEFFKAGREVHGSSIRMGLESDIFIANSLIDMYAKSGHSTEASNVFYKLDAKNVVSWN 314

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+  F    +   A+ + R+M+    + ++V   N++   A +G ++ GK++HA+ +  
Sbjct: 315 AMIANFAQNRFELVAVGLVRQMQDYGELPNSVTFTNVLPACARMGLVRPGKEIHARSIHM 374

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           G   +L +SN++  MY+K G L  +R+VF+  + +  VS+  +I G  Q     E+L+ F
Sbjct: 375 GCAFDLFVSNALTDMYAKSGHLKLARNVFDT-SLRDEVSYNILIVGXSQTSDCSESLSLF 433

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            +M Q      D+++ +  L+A   L A++   ++HG      F  +  V N L+  Y+K
Sbjct: 434 SEM-QLMGLKQDNVSFMGALSACANLTAIKQGKEIHGFLLRKLFHIHLFVANSLLDFYTK 492

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP--DSSTY 458
           CG + LA  +F+ M   +DV SWNT+I GYG+ G  +TA+ L  +     +V   DS ++
Sbjct: 493 CGRIGLARNIFDRMTN-KDVASWNTMILGYGMLGELDTAIDLLTENMRKDDVESDDSVSF 551

Query: 459 LSILNACGH--AGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK 516
           +++L+AC H  AGL  +      ++I+   + P    +G ++      G L  A+  A  
Sbjct: 552 IAVLSACSHGRAGLMEEAA----ELIKGLPIVPDANIWGALLGACRIYGNLELAAWAAEH 607

Query: 517 LLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFLN 565
           L E + P              GR+ +A  +R   + +G+ K PG S++ 
Sbjct: 608 LFE-LKPE----------HKTGRWDEANRIRELMKSRGVKKSPGCSWVQ 645


>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  234 bits (598), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 165/605 (27%), Positives = 285/605 (47%), Gaps = 98/605 (16%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           ++L+  Y K   + +A  LFD +P++N  +W+ +I   + +GF +++ +           
Sbjct: 54  NRLIDVYGKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAAR----------- 102

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINN 128
                                                LF  +  P   S N++V+GF  +
Sbjct: 103 -------------------------------------LFGSMPEPDQCSWNSMVSGFAQH 125

Query: 129 KLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVN 188
             F++++  F        + N  +  + +  C  L    +   +H L  K     DV + 
Sbjct: 126 DRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMG 185

Query: 189 NSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRII 248
           ++++DMYS    +  A ++F  M  +++++W  ++  +     A +AL++F  M  S + 
Sbjct: 186 SALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLE 245

Query: 249 CDTVALLNLISVNAILGDLKRGKQLHAQVV-LGGLQSELRLSNSIIAMYSKCGDLDSSRS 307
            D V L +++S  A L  LK G Q+HA+VV     + +L L N+++ MY+KC  ++ +R 
Sbjct: 246 PDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARR 305

Query: 308 VFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELA 367
           VF++++ +++VS T+++SGY +    + A   F KM Q    S ++  L++  T +GE  
Sbjct: 306 VFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNA--LIAGYTQNGENE 363

Query: 368 ALEICLQLHGIAFEAGFPRYRS----------VQNCLISSYSKCGNVDLAYIVFEEMGFL 417
                 +L  +  E+ +P + +          V N LI  Y KCG+++    VFE+M   
Sbjct: 364 EALRLFRL--LKRESIWPTHYTFGNLLKSDIFVGNSLIDMYMKCGSIEDGSRVFEKMK-E 420

Query: 418 RDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVI 477
           RD VSWN II GY  NG+G  AL ++ KM   GE PD  T + +L AC HAGL  +G   
Sbjct: 421 RDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHY 480

Query: 478 FNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH- 536
           F  M EE+ + P ++HY C+VDLL RAGCL++A  L   +       +W +LL+ C +H 
Sbjct: 481 FFSM-EEHGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHG 539

Query: 537 --------------------------------VGRFQDAEALRSGSQKKGIIKIPGISFL 564
                                           +GR+ D   +R   +++G+ K PG S++
Sbjct: 540 NIEMGKHAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCSWI 599

Query: 565 NSTSR 569
              SR
Sbjct: 600 EVESR 604



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 137/535 (25%), Positives = 235/535 (43%), Gaps = 66/535 (12%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  + +  + L+S   KSG + EA  LF  +PE +  SW+ ++ G++ +   E+S++ F 
Sbjct: 77  PQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFV 136

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--------------- 105
            M     L N ++    L A AGL +L +   +H L+ K    +D               
Sbjct: 137 KMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCG 196

Query: 106 -------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                  +F G+    LV+ N+++  +  N    +A+ +F     SGL P+ VT+ +V+ 
Sbjct: 197 SVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVS 256

Query: 159 GCVALGSRALCELIHGLTIKLGLIL------DVSVNNSVLDMYSCLMDLDAAIQIFREME 212
            C      +LC L  GL I   ++       D+ + N+++DMY+    ++ A ++F  M 
Sbjct: 257 ACA-----SLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMS 311

Query: 213 CKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGD------ 266
            ++V+S T M+       YA  A      ++ +R +   +   N++S NA++        
Sbjct: 312 IRNVVSETSMVS-----GYARAA-----SVKAARFMFSKMTQRNVVSWNALIAGYTQNGE 361

Query: 267 ----------LKRGKQLHAQVVLGG-LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK 315
                     LKR          G  L+S++ + NS+I MY KCG ++    VF ++ E+
Sbjct: 362 NEEALRLFRLLKRESIWPTHYTFGNLLKSDIFVGNSLIDMYMKCGSIEDGSRVFEKMKER 421

Query: 316 SLVSWTAIISGYVQNGCAREALNQFIKMR--QEKTDSVDSITLVSILTASGELAALEICL 373
             VSW AII GY QNG   EAL  F KM    EK D V   T++ +L A      +E   
Sbjct: 422 DCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHV---TMIGVLCACSHAGLVEEGR 478

Query: 374 QLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVN 433
                  E G    +    C++    + G ++ A  + E M    D V W +++    V+
Sbjct: 479 HYFFSMEEHGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVH 538

Query: 434 GHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVK 488
           G+ E       K+ E  +  +S  Y+ + N     G   D + +   M ++   K
Sbjct: 539 GNIEMGKHAAEKLLEI-DPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTK 592



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 106/431 (24%), Positives = 202/431 (46%), Gaps = 55/431 (12%)

Query: 147 VPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMY---SCLMD--- 200
           +PN+     ++  C+   S     L+H   +     +++ + N ++D+Y    CL D   
Sbjct: 12  LPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARK 71

Query: 201 -------------------------LDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDA 235
                                    LD A ++F  M   D  SW  M+  F   +   ++
Sbjct: 72  LFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEES 131

Query: 236 LKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAM 295
           L+ F +M +   + +  +  + +S  A L DL  G Q+HA V      +++ + +++I M
Sbjct: 132 LEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDM 191

Query: 296 YSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSIT 355
           YSKCG +  +  VF+ + E++LV+W ++I+ Y QNG A EAL  F++M     +  D +T
Sbjct: 192 YSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEP-DEVT 250

Query: 356 LVSILTASGELAALEICLQLHGIAFEAGFPRYRS---VQNCLISSYSKCGNVDLAYIVFE 412
           L S+++A   L AL+  LQ+H    +    ++R    + N L+  Y+KC  V+ A  VF+
Sbjct: 251 LASVVSACASLCALKEGLQIHARVVKTN--KFRDDLVLGNALVDMYAKCSKVNEARRVFD 308

Query: 413 EMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTN 472
            M  +R+VVS  +++ GY      + A  ++ KMT+   V    ++ +++      G   
Sbjct: 309 RMS-IRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVV----SWNALIAGYTQNGENE 363

Query: 473 DGLVIFNQMIEENKVKPSQEHYG-----------CVVDLLARAGCLSDASGLAGKLLEGM 521
           + L +F ++++   + P+   +G            ++D+  + G + D S +  K+ E  
Sbjct: 364 EALRLF-RLLKRESIWPTHYTFGNLLKSDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERD 422

Query: 522 GPNIWRALLSG 532
             + W A++ G
Sbjct: 423 CVS-WNAIIVG 432


>gi|224115126|ref|XP_002332220.1| predicted protein [Populus trichocarpa]
 gi|222831877|gb|EEE70354.1| predicted protein [Populus trichocarpa]
          Length = 673

 Score =  234 bits (597), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 140/444 (31%), Positives = 235/444 (52%), Gaps = 17/444 (3%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F+ L    +V    ++ G++ N   + AV +F     SG  P+  T+   +  C +L S
Sbjct: 37  VFDNLPRRNVVVWTTLMTGYVQNSQPEVAVEVFGDMLESGSFPSNFTLSIALNACSSLES 96

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
             L +  H   IK  +  D S+ N++  +YS    LD++++ FRE   KDVISWT ++  
Sbjct: 97  ITLGKQFHAFIIKYRISHDSSIGNALCSLYSKFGSLDSSVKAFRETGEKDVISWTTIISA 156

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
             D   AG  L++F EM    +  +   L +++S+ + +     G Q+H+     G +S 
Sbjct: 157 CGDNGRAGMGLRLFIEMLFENVEPNDFTLTSVLSLCSTIQSSDLGMQVHSLSTKLGHESN 216

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQ-----------NGCAR 334
           LR++NS++ +Y KCG +D ++++FN++  K+L++W A+I+G+ Q                
Sbjct: 217 LRITNSLVYLYLKCGCIDEAKNLFNRMEYKNLITWNAMIAGHAQAMDLAKDNFSAQQTGT 276

Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
           EAL  ++K+ +      D  TL SILT    LAALE   Q+H    ++GF     V   L
Sbjct: 277 EALGMYLKLNRSGRKP-DLFTLSSILTVCSRLAALEQGEQIHAQTIKSGFLSDVVVGTAL 335

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           +  Y KCG+++ A   F +M   R ++SW ++I  +  +G  + AL L+  M   G  P+
Sbjct: 336 VDMYDKCGSIERARKAFLDMS-TRTLISWTSMITSFARHGQSQHALQLFEDMRLAGFRPN 394

Query: 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLA 514
             T++ +L AC HAG+ ++ L  F  M +E K+KP  +HYGC+VD+  R G L +A  + 
Sbjct: 395 QITFVGVLAACSHAGMVDEALEYFEIMQKEYKIKPVMDHYGCLVDMFVRLGRLDEAFDVI 454

Query: 515 GKLLEGMGPN--IWRALLSGCVLH 536
            ++   + PN  IW  L++GC  H
Sbjct: 455 KRM--DVEPNEFIWLLLIAGCRNH 476



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 129/518 (24%), Positives = 241/518 (46%), Gaps = 47/518 (9%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           S L++ Y K G +  A  +FD +P +NVV W+ ++ GY  N   E +++ F  M+ SG  
Sbjct: 19  SFLVNVYAKCGVMVNARKVFDNLPRRNVVVWTTLMTGYVQNSQPEVAVEVFGDMLESGSF 78

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------L 106
           P++FT+   L A + L+++ L +  H  ++K+ +  D                       
Sbjct: 79  PSNFTLSIALNACSSLESITLGKQFHAFIIKYRISHDSSIGNALCSLYSKFGSLDSSVKA 138

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           F       ++S   I++   +N      + LF       + PN  T+ +V+  C  + S 
Sbjct: 139 FRETGEKDVISWTTIISACGDNGRAGMGLRLFIEMLFENVEPNDFTLTSVLSLCSTIQSS 198

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG-- 224
            L   +H L+ KLG   ++ + NS++ +Y     +D A  +F  ME K++I+W  M+   
Sbjct: 199 DLGMQVHSLSTKLGHESNLRITNSLVYLYLKCGCIDEAKNLFNRMEYKNLITWNAMIAGH 258

Query: 225 ---------LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
                     F   +   +AL ++ ++ +S    D   L ++++V + L  L++G+Q+HA
Sbjct: 259 AQAMDLAKDNFSAQQTGTEALGMYLKLNRSGRKPDLFTLSSILTVCSRLAALEQGEQIHA 318

Query: 276 QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
           Q +  G  S++ +  +++ MY KCG ++ +R  F  ++ ++L+SWT++I+ + ++G ++ 
Sbjct: 319 QTIKSGFLSDVVVGTALVDMYDKCGSIERARKAFLDMSTRTLISWTSMITSFARHGQSQH 378

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYR-----SV 390
           AL  F  MR       + IT V +L A      ++  L+     FE     Y+       
Sbjct: 379 ALQLFEDMRLAGFRP-NQITFVGVLAACSHAGMVDEALEY----FEIMQKEYKIKPVMDH 433

Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
             CL+  + + G +D A+ V + M    +   W  +I   G   HG   L  Y       
Sbjct: 434 YGCLVDMFVRLGRLDEAFDVIKRMDVEPNEFIWLLLI--AGCRNHGNEELGFYAAEQLLK 491

Query: 451 EVPDSS-TYLSILNACGHAGLTNDGLVIFNQMIEENKV 487
             P S+ TY+ +LN    A    D + +  ++++E KV
Sbjct: 492 LKPRSTETYVVLLNMYISAERWED-VSMVRRLMKEEKV 528



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 157/324 (48%), Gaps = 13/324 (4%)

Query: 171 LIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFE 230
           ++H   IK G   +  V + ++++Y+    +  A ++F  +  ++V+ WT +M  +V   
Sbjct: 1   MVHAHVIKTGTHEEFFVMSFLVNVYAKCGVMVNARKVFDNLPRRNVVVWTTLMTGYVQNS 60

Query: 231 YAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSN 290
               A+++F +M +S        L   ++  + L  +  GKQ HA ++   +  +  + N
Sbjct: 61  QPEVAVEVFGDMLESGSFPSNFTLSIALNACSSLESITLGKQFHAFIIKYRISHDSSIGN 120

Query: 291 SIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDS 350
           ++ ++YSK G LDSS   F +  EK ++SWT IIS    NG A   L  FI+M  E  + 
Sbjct: 121 ALCSLYSKFGSLDSSVKAFRETGEKDVISWTTIISACGDNGRAGMGLRLFIEMLFENVEP 180

Query: 351 VDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIV 410
            D  TL S+L+    + + ++ +Q+H ++ + G      + N L+  Y KCG +D A  +
Sbjct: 181 ND-FTLTSVLSLCSTIQSSDLGMQVHSLSTKLGHESNLRITNSLVYLYLKCGCIDEAKNL 239

Query: 411 FEEMGFLRDVVSWNTIIYG-----------YGVNGHGETALALYHKMTETGEVPDSSTYL 459
           F  M + +++++WN +I G           +     G  AL +Y K+  +G  PD  T  
Sbjct: 240 FNRMEY-KNLITWNAMIAGHAQAMDLAKDNFSAQQTGTEALGMYLKLNRSGRKPDLFTLS 298

Query: 460 SILNACGHAGLTNDGLVIFNQMIE 483
           SIL  C        G  I  Q I+
Sbjct: 299 SILTVCSRLAALEQGEQIHAQTIK 322


>gi|414864687|tpg|DAA43244.1| TPA: hypothetical protein ZEAMMB73_488594 [Zea mays]
          Length = 658

 Score =  234 bits (597), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 147/527 (27%), Positives = 260/527 (49%), Gaps = 26/527 (4%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P   P   S +LS +  +G++ EA + F  +        +++I G++  G    ++ A+ 
Sbjct: 53  PSSAPRPKSLVLS-HIAAGRMDEAADAFAGVSSPGAFLHNVMIRGFADAGLPLDALAAYR 111

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL-------------- 106
            M+ +   P+ FT   V+        L   R+ H  ++K GL +D+              
Sbjct: 112 AMLAASARPDRFTFPVVVKCCTRAGALGEGRAAHAAVIKLGLGADMYTANSLVALYAKLG 171

Query: 107 --------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVP-NAVTMLTVI 157
                   F+G+    +VS N +V G+++N +   A+  F     +  V  + V ++  +
Sbjct: 172 LVGDAERVFDGMPARDIVSWNTMVDGYVSNGMGALALACFRDMNDALRVRHDGVGVIAAL 231

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
             C    + A    IHG  I+ GL  DV V  S++DMY    ++  A  +F  M  + V+
Sbjct: 232 AACCLESALAQGREIHGYAIRHGLEQDVKVGTSLVDMYCKCGNVLYAENVFATMLLRTVV 291

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           +W  ++G +   E   DA   F +MR      + V  +NL++          G+ +HA V
Sbjct: 292 TWNCLIGGYALNERPVDAFDCFMQMRAEGFQVEAVTAINLLAACGQTESSLYGRSVHAYV 351

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           V       + L  +++ MY   G ++SS  +F Q+TEK++V+W  +I+ Y+     +EA+
Sbjct: 352 VRRHFLPHVVLETALLEMYGNVGKVESSEKIFGQMTEKTVVTWNNMIAAYIYMEMYQEAI 411

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
             F+++  +     D  T+ +++ A   L +L  C Q+H    + G+     + N ++  
Sbjct: 412 ALFLELLNQPLYP-DYFTMTTVVPAFVLLGSLRQCRQMHSYIIKLGYGDSTLIMNAVMHM 470

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           Y++CG++  +  +F++M   +DV+SWNTII GY ++G G+TAL ++ +M   G  P+ ST
Sbjct: 471 YARCGDIVASREIFDKMPG-KDVISWNTIIIGYAIHGQGKTALEMFDEMKCNGIEPNEST 529

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARA 504
           ++S+L AC  +GL  +G   FN M  E  + P  EHYGC+ DLL RA
Sbjct: 530 FVSVLTACSVSGLETEGWKEFNSMQHEYGMVPQIEHYGCMTDLLGRA 576


>gi|242074230|ref|XP_002447051.1| hypothetical protein SORBIDRAFT_06g027570 [Sorghum bicolor]
 gi|241938234|gb|EES11379.1| hypothetical protein SORBIDRAFT_06g027570 [Sorghum bicolor]
          Length = 818

 Score =  234 bits (597), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 172/564 (30%), Positives = 286/564 (50%), Gaps = 42/564 (7%)

Query: 14  NYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFT 73
            Y   G +     LFD +P++N VSW+ +   Y   G  +++++ F+ M+  G+ P   +
Sbjct: 185 RYRGDGGVDVVRRLFDVMPKRNAVSWNTLFGWYVKTGRPQEALELFARMLEDGIKPTPVS 244

Query: 74  MVGVLVAAAGLQNLELARSIHGLMVKFGLE--SDLF------------EGLKNPYLV--- 116
            V V  A A  ++   +  ++GL+VK G E  +DLF              L++ + V   
Sbjct: 245 FVNVFPAVAK-EDPSWSFVLYGLLVKHGREYVNDLFVVSSAIAMFSELGDLQSAWRVFEY 303

Query: 117 -------SCNAIVAGFINNKLFQQAVLLFNFFRGSGLVP-NAVTMLTVIRGCVALGSRAL 168
                    N ++ G++ N  F +A+ L     GS  VP + VT L+ +          L
Sbjct: 304 TAKKNTEVWNTMITGYVQNGKFAEAMDLVIRLMGSKEVPLDVVTFLSALTAASQSQDGRL 363

Query: 169 CELIHGLTIK-LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
            + +HG  IK     L V + N+++ MYS   ++  A ++F  +  KD++SW  M+  FV
Sbjct: 364 GQQLHGYLIKGTHATLPVILGNALVVMYSRCGNVQTAFKLFDRLPEKDIVSWNTMVTAFV 423

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
             ++  + L +  +M+KS    D+V L  ++S  +  GDL+ GKQ H  +V  G++ E  
Sbjct: 424 QNDFDLEGLLLVYQMQKSCFAADSVTLTAVLSAASNTGDLQIGKQAHGYLVRRGIEDE-G 482

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQI--TEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           L + +I MY+K G ++ ++ VF+     ++  V+W A+I+GY Q+G   +A+  F  M Q
Sbjct: 483 LESYLIDMYAKSGRIEIAQRVFDDYGNVKRDEVTWNAMIAGYTQSGQPEQAILTFRAMLQ 542

Query: 346 EKTDSVDSITLVSILTASGELAALEICL--QLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
              +   S+TL S+L A   L    +C   Q+H  A          V   L+  YSKCG 
Sbjct: 543 ASLEPT-SVTLASVLPACDPLGG-GLCAGKQIHCFALRRCLDTNVFVGTALVDMYSKCGE 600

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           +  A  VF  M   +  VS+ T+I G G +G GE AL+L++ M E G  PD  T+L+ ++
Sbjct: 601 ISTAEHVFAVM-IEKSTVSYTTMISGLGQHGFGERALSLFYYMQEKGLKPDGVTFLAAIS 659

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL-LEGMG 522
           AC ++GL ++GL ++  M E   V  + +H  C+VD+LA+AG + +A     +L  EG  
Sbjct: 660 ACNYSGLVDEGLALYRSM-ETFGVAVTPQHRCCIVDMLAKAGRVEEAYEFVQELGEEGNF 718

Query: 523 PNIWRALLSGCVLHVGRFQDAEAL 546
            +IW +LL  C     + QD + L
Sbjct: 719 ISIWGSLLVSC-----KAQDKQEL 737



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 116/458 (25%), Positives = 220/458 (48%), Gaps = 42/458 (9%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  S  ++ + + G ++ A  +F+   +KN   W+ +I GY  NG   ++M     +M
Sbjct: 277 DLFVVSSAIAMFSELGDLQSAWRVFEYTAKKNTEVWNTMITGYVQNGKFAEAMDLVIRLM 336

Query: 64  LSGLLP-NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES------------------ 104
            S  +P +  T +  L AA+  Q+  L + +HG ++K    +                  
Sbjct: 337 GSKEVPLDVVTFLSALTAASQSQDGRLGQQLHGYLIKGTHATLPVILGNALVVMYSRCGN 396

Query: 105 -----DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                 LF+ L    +VS N +V  F+ N    + +LL    + S    ++VT+  V+  
Sbjct: 397 VQTAFKLFDRLPEKDIVSWNTMVTAFVQNDFDLEGLLLVYQMQKSCFAADSVTLTAVLSA 456

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME--CKDVI 217
               G   + +  HG  ++ G I D  + + ++DMY+    ++ A ++F +     +D +
Sbjct: 457 ASNTGDLQIGKQAHGYLVRRG-IEDEGLESYLIDMYAKSGRIEIAQRVFDDYGNVKRDEV 515

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLI-SVNAILGDLKRGKQLHAQ 276
           +W  M+  +        A+  FR M ++ +   +V L +++ + + + G L  GKQ+H  
Sbjct: 516 TWNAMIAGYTQSGQPEQAILTFRAMLQASLEPTSVTLASVLPACDPLGGGLCAGKQIHCF 575

Query: 277 VVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
            +   L + + +  +++ MYSKCG++ ++  VF  + EKS VS+T +ISG  Q+G    A
Sbjct: 576 ALRRCLDTNVFVGTALVDMYSKCGEISTAEHVFAVMIEKSTVSYTTMISGLGQHGFGERA 635

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTA---SG---ELAALEICLQLHGIAFEAGFPRYRSV 390
           L+ F  M QEK    D +T ++ ++A   SG   E  AL   ++  G+A     P++R  
Sbjct: 636 LSLFYYM-QEKGLKPDGVTFLAAISACNYSGLVDEGLALYRSMETFGVAVT---PQHRC- 690

Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVS-WNTII 427
             C++   +K G V+ AY   +E+G   + +S W +++
Sbjct: 691 --CIVDMLAKAGRVEEAYEFVQELGEEGNFISIWGSLL 726



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 112/436 (25%), Positives = 207/436 (47%), Gaps = 33/436 (7%)

Query: 119 NAIVAGFINNKLFQQAVLLFNFF-RGSGLVPNA--VTMLTVIRGCVALGSRALCELIHGL 175
           NA++  ++   L + A+ L+      +   P +   T    +  C       L + +H  
Sbjct: 99  NALLIAYVARSLPEHALRLYALLNHAARPAPRSDHYTYSCALTACARTRRLRLGKSVHAH 158

Query: 176 TIKLGLIL-DVSV-NNSVLDMYSCLMD------LDAAIQIFREMECKDVISWTRMMGLFV 227
            ++    L D +V  NS+L++Y+  M       +D   ++F  M  ++ +SW  + G +V
Sbjct: 159 LLRRARSLPDTAVLRNSLLNLYASCMRYRGDGGVDVVRRLFDVMPKRNAVSWNTLFGWYV 218

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ--SE 285
                 +AL++F  M +  I    V+ +N+    A   D      L+  +V  G +  ++
Sbjct: 219 KTGRPQEALELFARMLEDGIKPTPVSFVNVFPAVAK-EDPSWSFVLYGLLVKHGREYVND 277

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           L + +S IAM+S+ GDL S+  VF    +K+   W  +I+GYVQNG   EA++  I++  
Sbjct: 278 LFVVSSAIAMFSELGDLQSAWRVFEYTAKKNTEVWNTMITGYVQNGKFAEAMDLVIRLMG 337

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFE---AGFPRYRSVQNCLISSYSKCG 402
            K   +D +T +S LTA+ +     +  QLHG   +   A  P    + N L+  YS+CG
Sbjct: 338 SKEVPLDVVTFLSALTAASQSQDGRLGQQLHGYLIKGTHATLPVI--LGNALVVMYSRCG 395

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
           NV  A+ +F+ +   +D+VSWNT++  +  N      L L ++M ++    DS T  ++L
Sbjct: 396 NVQTAFKLFDRLP-EKDIVSWNTMVTAFVQNDFDLEGLLLVYQMQKSCFAADSVTLTAVL 454

Query: 463 NACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMG 522
           +A  + G    G      ++         E Y  ++D+ A++G +     +A ++ +  G
Sbjct: 455 SAASNTGDLQIGKQAHGYLVRRGIEDEGLESY--LIDMYAKSGRIE----IAQRVFDDYG 508

Query: 523 PNI------WRALLSG 532
            N+      W A+++G
Sbjct: 509 -NVKRDEVTWNAMIAG 523


>gi|90657601|gb|ABD96900.1| hypothetical protein [Cleome spinosa]
          Length = 924

 Score =  234 bits (597), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 166/580 (28%), Positives = 268/580 (46%), Gaps = 54/580 (9%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D  + S LL  Y K  ++ E+  +F  +P+KN +SWS +I G   N F +  +K F  M 
Sbjct: 215 DVVSGSALLDMYAKCKRLDESFTVFYAMPQKNWISWSAIIAGCVQNNFLDGGLKMFKEMQ 274

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
             G+  +      VL + A L +L L   +H   +K     D                  
Sbjct: 275 KVGVGVSQSIYASVLKSCATLPDLRLGTQLHAHALKSDFVKDGIVRTATLDMYAKCNNMQ 334

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               LF+  +N  L S NA++ G+       +A+LLF     S L  + +++   +R C 
Sbjct: 335 DAQRLFDMSENLNLQSYNAMITGYSQKDNGFRALLLFRKLSKSSLGFDEISLSGALRACA 394

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            +   +    +HGL  K     ++ V N+ +DMY     LD A ++F EM  KD +SW  
Sbjct: 395 TVKGLSEGLQLHGLATKSNFSRNICVANAFIDMYGKCEALDEACRVFDEMGRKDAVSWNA 454

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGD-LKRGKQLHAQVVLG 280
           ++      E     L I   M +S +  D     +++   A  GD L  G ++H  +V  
Sbjct: 455 IIAAHEQNEERSKTLNILVSMLRSGMEPDEYTFGSVLK--ACAGDSLNHGMEIHTTIVKL 512

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQI---------------------------T 313
           G+ S   + +S++ MYSKCG +D +  + N+I                            
Sbjct: 513 GMASNPYIGSSLVDMYSKCGMIDEAEKIHNKIFIGIGDSNTYSEHPETIEEPKGIQDRRV 572

Query: 314 EKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICL 373
           ++ +VSW AIISGYV    + +A   F +M  E   + D  T  ++L     LA++ +  
Sbjct: 573 QEMIVSWNAIISGYVMRKQSEDAQRFFNRM-MEMGITPDKFTYSTVLDTCANLASIGLGK 631

Query: 374 QLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVN 433
           Q+H    +        + + L+  YSKCGN+  + ++FE+   +RD V+WN +I GY  +
Sbjct: 632 QIHAHVIKKELQYDVYICSTLVDMYSKCGNLHDSRLMFEKAP-IRDFVTWNAMICGYAHH 690

Query: 434 GHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEH 493
           G GE A+ L+  M     +P+ +T++S+L AC H GL   GL  F+ M +E  + P  EH
Sbjct: 691 GMGEEAIKLFESMVLMNIMPNHATFVSLLRACAHMGLVERGLDYFHMMKKEYGLDPRLEH 750

Query: 494 YGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGC 533
           Y  +VD+L ++G +  A  L  ++       IWR LLS C
Sbjct: 751 YSNMVDILGKSGEVEKALELIQEMPFEADDVIWRTLLSAC 790



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 142/513 (27%), Positives = 242/513 (47%), Gaps = 26/513 (5%)

Query: 30  EIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLEL 89
           E P  +V ++S V    +    HE   +A +HM++SG  P  F    +L       NL  
Sbjct: 43  EKPATSVANFSFVFKECAKQRAHELGKQAHAHMIISGFRPTVFVSNCLLQLYINCGNLGY 102

Query: 90  AR------------SIHGLMVKFGLESDL------FEGLKNPYLVSCNAIVAGFINNKLF 131
           A             S + ++  +   +D+      FE +    +VS N++++GF+     
Sbjct: 103 ATKLFDGMPLRDVVSWNAMIFGYAASNDMVRASLCFEMMPTRDVVSWNSMLSGFLQTGEN 162

Query: 132 QQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSV 191
            ++V +F     SG+  +  +   +++ C  L +  L   IHG+ +++G   DV   +++
Sbjct: 163 LESVKVFIEMGRSGVEFDNKSFSVILKVCSILENYKLGTQIHGIALRMGYDTDVVSGSAL 222

Query: 192 LDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDT 251
           LDMY+    LD +  +F  M  K+ ISW+ ++   V   +    LK+F+EM+K  +    
Sbjct: 223 LDMYAKCKRLDESFTVFYAMPQKNWISWSAIIAGCVQNNFLDGGLKMFKEMQKVGVGVSQ 282

Query: 252 VALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQ 311
               +++   A L DL+ G QLHA  +      +  +  + + MY+KC ++  ++ +F+ 
Sbjct: 283 SIYASVLKSCATLPDLRLGTQLHAHALKSDFVKDGIVRTATLDMYAKCNNMQDAQRLFDM 342

Query: 312 ITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEI 371
               +L S+ A+I+GY Q      AL  F K+ +      D I+L   L A   +  L  
Sbjct: 343 SENLNLQSYNAMITGYSQKDNGFRALLLFRKLSKSSL-GFDEISLSGALRACATVKGLSE 401

Query: 372 CLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYG 431
            LQLHG+A ++ F R   V N  I  Y KC  +D A  VF+EMG  +D VSWN II  + 
Sbjct: 402 GLQLHGLATKSNFSRNICVANAFIDMYGKCEALDEACRVFDEMG-RKDAVSWNAIIAAHE 460

Query: 432 VNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQ 491
            N      L +   M  +G  PD  T+ S+L AC    L N G+ I   ++   K+  + 
Sbjct: 461 QNEERSKTLNILVSMLRSGMEPDEYTFGSVLKACAGDSL-NHGMEIHTTIV---KLGMAS 516

Query: 492 EHY--GCVVDLLARAGCLSDASGLAGKLLEGMG 522
             Y    +VD+ ++ G + +A  +  K+  G+G
Sbjct: 517 NPYIGSSLVDMYSKCGMIDEAEKIHNKIFIGIG 549



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 148/593 (24%), Positives = 266/593 (44%), Gaps = 70/593 (11%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  D  + + ++  Y  S  +  A   F+ +P ++VVSW+ ++ G+   G + +S+K F 
Sbjct: 111 PLRDVVSWNAMIFGYAASNDMVRASLCFEMMPTRDVVSWNSMLSGFLQTGENLESVKVFI 170

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--------------- 105
            M  SG+  ++ +   +L   + L+N +L   IHG+ ++ G ++D               
Sbjct: 171 EMGRSGVEFDNKSFSVILKVCSILENYKLGTQIHGIALRMGYDTDVVSGSALLDMYAKCK 230

Query: 106 -------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                  +F  +     +S +AI+AG + N      + +F   +  G+  +     +V++
Sbjct: 231 RLDESFTVFYAMPQKNWISWSAIIAGCVQNNFLDGGLKMFKEMQKVGVGVSQSIYASVLK 290

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C  L    L   +H   +K   + D  V  + LDMY+   ++  A ++F   E  ++ S
Sbjct: 291 SCATLPDLRLGTQLHAHALKSDFVKDGIVRTATLDMYAKCNNMQDAQRLFDMSENLNLQS 350

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           +  M+  +   +    AL +FR++ KS +  D ++L   +   A +  L  G QLH    
Sbjct: 351 YNAMITGYSQKDNGFRALLLFRKLSKSSLGFDEISLSGALRACATVKGLSEGLQLHGLAT 410

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
                  + ++N+ I MY KC  LD +  VF+++  K  VSW AII+ + QN    + LN
Sbjct: 411 KSNFSRNICVANAFIDMYGKCEALDEACRVFDEMGRKDAVSWNAIIAAHEQNEERSKTLN 470

Query: 339 QFIKMRQEKTDSVDSITLVSILTA-SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
             + M +   +  D  T  S+L A +G+  +L   +++H    + G      + + L+  
Sbjct: 471 ILVSMLRSGMEP-DEYTFGSVLKACAGD--SLNHGMEIHTTIVKLGMASNPYIGSSLVDM 527

Query: 398 YSKCGNVDLAYIV--------------------FEEMGFLRD------VVSWNTIIYGYG 431
           YSKCG +D A  +                     EE   ++D      +VSWN II GY 
Sbjct: 528 YSKCGMIDEAEKIHNKIFIGIGDSNTYSEHPETIEEPKGIQDRRVQEMIVSWNAIISGYV 587

Query: 432 VNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQ 491
           +    E A   +++M E G  PD  TY ++L+ C  A L + GL    + I  + +K   
Sbjct: 588 MRKQSEDAQRFFNRMMEMGITPDKFTYSTVLDTC--ANLASIGL---GKQIHAHVIKKEL 642

Query: 492 EH--YGC--VVDLLARAGCLSDASGLAGKLLEGMGP----NIWRALLSGCVLH 536
           ++  Y C  +VD+ ++ G L D+     +L+    P      W A++ G   H
Sbjct: 643 QYDVYICSTLVDMYSKCGNLHDS-----RLMFEKAPIRDFVTWNAMICGYAHH 690


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  234 bits (597), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 136/408 (33%), Positives = 213/408 (52%), Gaps = 4/408 (0%)

Query: 131 FQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNS 190
           F QA+ L+      G  PNA T    ++ C AL    L    HG   K+G + +  V   
Sbjct: 21  FLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQITKVGCVFEPFVQTG 80

Query: 191 VLDMYSCLMDLDAAIQIFRE--MECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRII 248
           ++ MY     +D A ++F E     K  + +  ++  +V      DA+ +FR+M +  + 
Sbjct: 81  LISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDAVLLFRQMNEEGVP 140

Query: 249 CDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSV 308
            ++V LL LI       +L+ G  LH   +  G  S++ + N  I MY KCG ++ ++ +
Sbjct: 141 VNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKL 200

Query: 309 FNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAA 368
           F+++  K L+SW A++SGY QNG A   L  +  M        D +TLV +L++   L A
Sbjct: 201 FDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHP-DPVTLVGVLSSCANLGA 259

Query: 369 LEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIY 428
             +  ++      +GF     + N LI+ Y++CGN+  A  VF+ M   R +VSW  II 
Sbjct: 260 QSVGHEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMP-ERTLVSWTAIIG 318

Query: 429 GYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVK 488
           GYG++GHGE A+ L+ +M  +G  PD + ++ +L+AC HAGLT+ GL  F  M    +++
Sbjct: 319 GYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLE 378

Query: 489 PSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
           P  EHY C+VDLL RAG L +A  L   +       +W ALL  C +H
Sbjct: 379 PGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIH 426



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 122/464 (26%), Positives = 212/464 (45%), Gaps = 36/464 (7%)

Query: 54  KSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF------ 107
           +++  +  M+  G  PN+FT    L + A L    L    HG + K G   + F      
Sbjct: 23  QALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQITKVGCVFEPFVQTGLI 82

Query: 108 -----------------EGLKNPYLVSC-NAIVAGFINNKLFQQAVLLFNFFRGSGLVPN 149
                            E   +  L  C NA+V+G+++N     AVLLF      G+  N
Sbjct: 83  SMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDAVLLFRQMNEEGVPVN 142

Query: 150 AVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFR 209
           +VT+L +I  CV+  +  L   +H  T+K G   DVSV N  + MY     ++ A ++F 
Sbjct: 143 SVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFD 202

Query: 210 EMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKR 269
           EM  K +ISW  M+  +     A + L+++R M  + +  D V L+ ++S  A LG    
Sbjct: 203 EMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSV 262

Query: 270 GKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQ 329
           G ++  ++   G  S   L+N++I MY++CG+L  +++VF+ + E++LVSWTAII GY  
Sbjct: 263 GHEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGM 322

Query: 330 NGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQL-----HGIAFEAGF 384
           +G    A+  F +M +   +  D    V +L+A       +  L+           E G 
Sbjct: 323 HGHGEIAVQLFKEMIRSGIEP-DGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGP 381

Query: 385 PRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH 444
             Y    +C++    + G +  A  + E M    D   W  ++    ++ + E A   + 
Sbjct: 382 EHY----SCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFE 437

Query: 445 KMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVK 488
           ++ E    P++  Y  +L+        + G++    M++E K+K
Sbjct: 438 RVIELE--PENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLK 479



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 141/292 (48%), Gaps = 24/292 (8%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDE--IPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
            +P+  + L+S Y K   +  A  +F+E     K  V ++ ++ GY  N     ++  F 
Sbjct: 73  FEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDAVLLFR 132

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--------------- 105
            M   G+  NS T++G++ A     NLEL  S+H   +K+G +SD               
Sbjct: 133 QMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCG 192

Query: 106 -------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                  LF+ +    L+S NA+V+G+  N L    + L+     +G+ P+ VT++ V+ 
Sbjct: 193 SVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLS 252

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C  LG++++   +       G   +  +NN++++MY+   +L  A  +F  M  + ++S
Sbjct: 253 SCANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVS 312

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG 270
           WT ++G +    +   A+++F+EM +S I  D  A + ++S  +  G   +G
Sbjct: 313 WTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQG 364



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 56/89 (62%), Gaps = 4/89 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           +P+ ++ L++ Y + G + +A+ +FD +PE+ +VSW+ +I GY ++G  E +++ F  M+
Sbjct: 278 NPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMI 337

Query: 64  LSGLLPNSFTMVGVLVAA--AGL--QNLE 88
            SG+ P+    V VL A   AGL  Q LE
Sbjct: 338 RSGIEPDGTAFVCVLSACSHAGLTDQGLE 366


>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
           [Vitis vinifera]
 gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
          Length = 601

 Score =  234 bits (597), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 141/432 (32%), Positives = 237/432 (54%), Gaps = 4/432 (0%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           LF+ L  PY+   N IV  F  +   Q  ++ ++  R  G++P+  T   +++    L +
Sbjct: 60  LFDRLATPYIFLWNTIVRSFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRN 119

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
               +  +   +K GL  D  V NS++  ++    +D + ++F E   KDV+SWT ++  
Sbjct: 120 ENPFQF-YAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALING 178

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG-LQS 284
            +    A +AL+ F EMR S +  D V +++++   A+L D+  G+ +H   V  G +  
Sbjct: 179 CLRNGRAVEALECFVEMRSSGVEVDEVTVVSVLCAAAMLRDVWFGRWVHGFYVESGRVIW 238

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           ++ + ++++ MYSKCG  D +  VFN++  ++LVSW A+I+GYVQ    +EAL  F +M 
Sbjct: 239 DVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMI 298

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
            E  +   S T+ S LTA  +L +L+    LH     +       +   L+  YSKCG V
Sbjct: 299 IEGIEPNQS-TVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCV 357

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           D A +VFE++   +DV  W  +I G  + G   ++L L+ +M  +   P+  T+L +L+A
Sbjct: 358 DEALLVFEKLP-AKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSA 416

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C H GL ++GL +F  MI + +++P+ +HYGC+VDLL RAG L +A      +     P 
Sbjct: 417 CAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPG 476

Query: 525 IWRALLSGCVLH 536
           +W AL SGC++H
Sbjct: 477 VWGALFSGCMIH 488



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 115/453 (25%), Positives = 205/453 (45%), Gaps = 45/453 (9%)

Query: 27  LFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQN 86
           LFD +    +  W+ ++  +S +   +  + A+S +   G++P+  T   +L A + L+N
Sbjct: 60  LFDRLATPYIFLWNTIVRSFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRN 119

Query: 87  LELARSIHGLMVKFGLESD----------------------LFEGLKNPYLVSCNAIVAG 124
            E     +  +VKFGL+ D                      LF       +VS  A++ G
Sbjct: 120 -ENPFQFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALING 178

Query: 125 FINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLG-LIL 183
            + N    +A+  F   R SG+  + VT+++V+     L        +HG  ++ G +I 
Sbjct: 179 CLRNGRAVEALECFVEMRSSGVEVDEVTVVSVLCAAAMLRDVWFGRWVHGFYVESGRVIW 238

Query: 184 DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMR 243
           DV V ++++DMYS     D A+++F EM  ++++SW  ++  +V      +ALK+F+EM 
Sbjct: 239 DVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMI 298

Query: 244 KSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLD 303
              I  +   + + ++  A LG L +G+ LH  V    L    +L  +++ MYSKCG +D
Sbjct: 299 IEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVD 358

Query: 304 SSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTAS 363
            +  VF ++  K +  WTA+I+G    G A  +LN F +M + +    + +T + +L+A 
Sbjct: 359 EALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQP-NGVTFLGVLSAC 417

Query: 364 GELAALEICLQLHGIAFEAGFPRYRSVQN-----CLISSYSKCGNVDLAYIVFEEMGFLR 418
                ++  L+L    F      YR   N     C++    + G ++ A    E M    
Sbjct: 418 AHGGLVDEGLEL----FRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEP 473

Query: 419 DVVSWNTIIYGYGVNGHGETALALYHKMTETGE 451
               W  +  G            + HK  E GE
Sbjct: 474 TPGVWGALFSG-----------CMIHKAFELGE 495



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 164/349 (46%), Gaps = 25/349 (7%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
            D +  + L+S +   G +  +  LF E  +K+VVSW+ +I+G   NG   ++++ F  M
Sbjct: 136 FDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEALECFVEM 195

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMV--------------------KFGL 102
             SG+  +  T+V VL AAA L+++   R +HG  V                    K G 
Sbjct: 196 RSSGVEVDEVTVVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGY 255

Query: 103 ESD---LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
             D   +F  +    LVS  A++AG++    +++A+ +F      G+ PN  T+ + +  
Sbjct: 256 CDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTA 315

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C  LGS      +H    +  L L+  +  +++DMYS    +D A+ +F ++  KDV  W
Sbjct: 316 CAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVYPW 375

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           T M+        A  +L +F +M +SR+  + V  L ++S  A  G +  G +L   ++ 
Sbjct: 376 TAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGLELFRLMIC 435

Query: 280 G-GLQSELRLSNSIIAMYSKCGDLDSS-RSVFNQITEKSLVSWTAIISG 326
              L+  +     ++ +  + G L+ + + + +   E +   W A+ SG
Sbjct: 436 DYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPGVWGALFSG 484


>gi|242084152|ref|XP_002442501.1| hypothetical protein SORBIDRAFT_08g020970 [Sorghum bicolor]
 gi|241943194|gb|EES16339.1| hypothetical protein SORBIDRAFT_08g020970 [Sorghum bicolor]
          Length = 701

 Score =  234 bits (597), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 197/673 (29%), Positives = 304/673 (45%), Gaps = 142/673 (21%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           YNS  +LS   + G+I EA  LFD +P +N VSW+ +I   S +G    +   F  M   
Sbjct: 52  YNS--MLSALARHGRIDEARALFDGMPSRNAVSWNAMIAALSDHGRVADARGLFDRMPSR 109

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMV-------------------KFGLESDL 106
                S+T++    A AG   LELAR +   M                    +F     L
Sbjct: 110 DDF--SWTVMVSCYARAG--ELELARDVLDRMPGDKCTACYNAMISGYAKNGRFDDAVKL 165

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFN----------------FFRGSGL---- 146
              +  P L S N+ +AG   +    +AV  F+                F R   L    
Sbjct: 166 LREMPAPDLFSWNSALAGLTQSGQMVRAVQFFDEMVEKDMVSWNLMLEGFVRAGDLDAAA 225

Query: 147 -------VPNAVTMLTVIRG-CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCL 198
                   PN V+ +T++ G C A       +L   +  +     +V   N +LD Y  L
Sbjct: 226 SFFGRIESPNVVSWVTLLNGYCRAGRISDARDLFDRMPER-----NVVACNVMLDGYVRL 280

Query: 199 MDLDAAIQIFREMECKDVISWTR-------------------------------MMGLFV 227
             L+ A ++F EM  K+ ISWT                                +M  ++
Sbjct: 281 SRLEEACKLFDEMPGKNSISWTTIISGLARAGKLQEAKDLLDKMSFNCVAAKTALMHGYL 340

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
                 DA +IF  M     + DTV    +IS     G ++RG    A ++   + ++  
Sbjct: 341 QRNMVNDARQIFDGME----VHDTVCWNTMIS-----GYVQRGMLEEAMLLFQRMPNKDT 391

Query: 288 LS-NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
           +S N++IA Y++ G +  +  +F +++ K+ VSW ++ISG+VQNG   +A + F+ MR+ 
Sbjct: 392 VSWNTMIAGYAQGGQMRKAIGIFRRMSRKNTVSWNSVISGFVQNGLFVDAFHHFMLMRR- 450

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
            T+  D  T  S L A   LAAL +  QLH +   +G       +N LIS+Y+KCG +  
Sbjct: 451 GTNRADWSTYASCLRACANLAALHVGRQLHSLLVRSGHINDLFARNALISTYAKCGRMLE 510

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           A  +F+EM   +D+VSWN ++ GY  NG G  A++++ +M   G  PD  T++ IL+AC 
Sbjct: 511 AKQIFDEM-VGKDIVSWNALVDGYASNGQGTEAISVFREMEANGVRPDEVTFVGILSACS 569

Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM--GPN 524
            AGL ++GL  FN M EE  +KP  EHY C+ DLL RAG L++A     +L++GM   PN
Sbjct: 570 RAGLIDEGLGFFNSMTEEYSLKPVAEHYACMADLLGRAGKLNEAF----ELVQGMQIQPN 625

Query: 525 --IWRALLSGCVLH---------------------------------VGRFQDAEALRSG 549
             +W ALL  C ++                                  G++ +AE  R+ 
Sbjct: 626 AGVWGALLGACQMYKNHELARLAAEKLSELEPCRASNYVLLSNISAEAGKWDEAEKARAS 685

Query: 550 SQKKGIIKIPGIS 562
            ++KG  K PG++
Sbjct: 686 IKEKGANKPPGLA 698


>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
           [Brassica oleracea]
          Length = 968

 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 158/563 (28%), Positives = 282/563 (50%), Gaps = 32/563 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + S+ L+S Y  +G + +A  +F  +PE+N+VSW+ +I  +S NG  E+       MM
Sbjct: 218 DVFVSNALVSFYGTNGSVSDALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMM 277

Query: 64  LS----GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-------------- 105
                    P+  T+  VL   A  + + + + +HGL +K  L+ +              
Sbjct: 278 EKDDEIAFTPDVATLATVLPVCARDREIGVGKGVHGLAMKLSLDKEVVVNNALMDMYSKC 337

Query: 106 --------LFEGLKNPYLVSCNAIVAGF-INNKLFQQAVLLFNFFRGSG-LVPNAVTMLT 155
                   +F+   N  +VS N +V GF     + +   LL     G G L  + VT+L 
Sbjct: 338 GCINDAQVIFKLNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILN 397

Query: 156 VIRGCVALGSRALCELIHGLTIKLGLILDVS-VNNSVLDMYSCLMDLDAAIQIFREMECK 214
            +  C         + +H  ++K   + +   V N+ +  Y+    L  A ++F  +  K
Sbjct: 398 AVPVCFEESVLPNLKELHCYSLKQEFVHNNELVANAFVASYAKCGSLSYAHRVFCSIRSK 457

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
            V SW  ++G +        +L  + +M+ S ++ D   + +L+S  + +  LK GK++H
Sbjct: 458 TVNSWNALIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQIKSLKLGKEVH 517

Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
             ++   L+ +  +  S++++Y  CG+L ++  +F+ + +K+LVSW  +++GY+QNG   
Sbjct: 518 GLIIRNRLERDSFVYISLLSLYIHCGELSTAHVLFDAMEDKTLVSWNTMVNGYLQNGFPE 577

Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
            AL+ F +M        + I+++S+  A   L +L +  + HG A +        +   +
Sbjct: 578 RALSLFRQMVLYGVQPCE-ISMMSVFGACSLLPSLRLGREAHGYALKCLLEDNAFIACSV 636

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           I  Y+K G+V  ++ VF  +   R V SWN ++ GYG++G  + A+ L+ +M  TG  PD
Sbjct: 637 IDMYAKNGSVMESFKVFNGLK-ERSVASWNAMVMGYGIHGRAKEAIKLFEEMQRTGHCPD 695

Query: 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLA 514
             T+L +L AC H+GL ++GL   +QM     + P+ +HY CV+D+L RAG L +A  +A
Sbjct: 696 ELTFLGVLTACNHSGLVHEGLTYLDQMKTLFGMNPTLKHYACVIDMLVRAGKLDEALKIA 755

Query: 515 G-KLLEGMGPNIWRALLSGCVLH 536
             ++ E  G  IW  LLS C +H
Sbjct: 756 TEEMSEEPGVGIWNFLLSSCRIH 778



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 167/586 (28%), Positives = 288/586 (49%), Gaps = 55/586 (9%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML-SGL 67
           +++++ Y   G   ++ ++FD + +KN+  W+ VI  YS N  +   ++ F  M+  SGL
Sbjct: 121 TRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVISSYSRNELYHNVLEMFVKMITESGL 180

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
           LP++FT   V+ A AG+  +++  ++HGL+VK  L  D                      
Sbjct: 181 LPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVEDVFVSNALVSFYGTNGSVSDALR 240

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGS----GLVPNAVTMLTVIRGCV 161
           +F+ +    LVS N+++  F +N L ++  LL              P+  T+ TV+  C 
Sbjct: 241 VFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATLATVLPVCA 300

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
                 + + +HGL +KL L  +V VNN+++DMYS    ++ A  IF+    K+V+SW  
Sbjct: 301 RDREIGVGKGVHGLAMKLSLDKEVVVNNALMDMYSKCGCINDAQVIFKLNNNKNVVSWNT 360

Query: 222 MMGLFVDFEYAGDALKIFREMRK-----SRIICDTVALLNLISVNAILGDLKRGKQLHAQ 276
           M+G    F  AGD  K F  +R+       +  D V +LN + V      L   K+LH  
Sbjct: 361 MVG---GFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILNAVPVCFEESVLPNLKELHCY 417

Query: 277 VVLGGL--QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
            +       +EL ++N+ +A Y+KCG L  +  VF  I  K++ SW A+I GY Q+   R
Sbjct: 418 SLKQEFVHNNEL-VANAFVASYAKCGSLSYAHRVFCSIRSKTVNSWNALIGGYSQSSDPR 476

Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
            +L+ + +M+       D  T+ S+L+A  ++ +L++  ++HG+       R   V   L
Sbjct: 477 LSLDAYFQMKSSGLLP-DLFTVCSLLSACSQIKSLKLGKEVHGLIIRNRLERDSFVYISL 535

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           +S Y  CG +  A+++F+ M   + +VSWNT++ GY  NG  E AL+L+ +M   G  P 
Sbjct: 536 LSLYIHCGELSTAHVLFDAMED-KTLVSWNTMVNGYLQNGFPERALSLFRQMVLYGVQPC 594

Query: 455 SSTYLSILNACG-----HAGLTNDGLVIFNQMIEENKVKPSQEHYGC-VVDLLARAGCLS 508
             + +S+  AC        G    G  +   ++E+N          C V+D+ A+ G + 
Sbjct: 595 EISMMSVFGACSLLPSLRLGREAHGYAL-KCLLEDNAF------IACSVIDMYAKNGSVM 647

Query: 509 DASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKG 554
           ++  +   L E    + W A++ G  +H GR ++A  L    Q+ G
Sbjct: 648 ESFKVFNGLKERSVAS-WNAMVMGYGIH-GRAKEAIKLFEEMQRTG 691



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 124/255 (48%), Gaps = 17/255 (6%)

Query: 266 DLKRGKQLHAQVVLGG-LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAII 324
           D++ G+++H  V     L ++  L   +I MYS CG  D SRSVF+ + +K+L  W A+I
Sbjct: 96  DIQLGRKIHQLVSESARLSNDDVLCTRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVI 155

Query: 325 SGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGF 384
           S Y +N      L  F+KM  E     D+ T   ++ A   ++ +++ L +HG+  +   
Sbjct: 156 SSYSRNELYHNVLEMFVKMITESGLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRL 215

Query: 385 PRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH 444
                V N L+S Y   G+V  A  VF+ M   R++VSWN++I  +  NG  E    L  
Sbjct: 216 VEDVFVSNALVSFYGTNGSVSDALRVFKIMP-ERNLVSWNSMIRVFSDNGLSEECFLLLG 274

Query: 445 KMTETGE----VPDSSTYLSILNACGH-----AGLTNDGLVIFNQMIEENKVKPSQEHYG 495
           +M E  +     PD +T  ++L  C        G    GL +   + +E  V        
Sbjct: 275 QMMEKDDEIAFTPDVATLATVLPVCARDREIGVGKGVHGLAMKLSLDKEVVVN------N 328

Query: 496 CVVDLLARAGCLSDA 510
            ++D+ ++ GC++DA
Sbjct: 329 ALMDMYSKCGCINDA 343


>gi|15233050|ref|NP_191676.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
 gi|6850884|emb|CAB71047.1| putative protein [Arabidopsis thaliana]
 gi|332646643|gb|AEE80164.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 783

 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 164/598 (27%), Positives = 285/598 (47%), Gaps = 38/598 (6%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  D +  + ++  Y  S ++ +AE LF   P KN +SW+ +I GY  +G   ++   F 
Sbjct: 55  PERDEFTWNTMIVAYSNSRRLSDAEKLFRSNPVKNTISWNALISGYCKSGSKVEAFNLFW 114

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL-------------- 106
            M   G+ PN +T+  VL     L  L     IHG  +K G + D+              
Sbjct: 115 EMQSDGIKPNEYTLGSVLRMCTSLVLLLRGEQIHGHTIKTGFDLDVNVVNGLLAMYAQCK 174

Query: 107 -----------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLT 155
                       EG KN   V+  +++ G+  N    +A+  F   R  G   N  T  +
Sbjct: 175 RISEAEYLFETMEGEKNN--VTWTSMLTGYSQNGFAFKAIECFRDLRREGNQSNQYTFPS 232

Query: 156 VIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKD 215
           V+  C ++ +  +   +H   +K G   ++ V ++++DMY+   ++++A  +   ME  D
Sbjct: 233 VLTACASVSACRVGVQVHCCIVKSGFKTNIYVQSALIDMYAKCREMESARALLEGMEVDD 292

Query: 216 VISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAI-LGDLKRGKQLH 274
           V+SW  M+   V     G+AL +F  M +  +  D   + ++++  A+   ++K     H
Sbjct: 293 VVSWNSMIVGCVRQGLIGEALSMFGRMHERDMKIDDFTIPSILNCFALSRTEMKIASSAH 352

Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
             +V  G  +   ++N+++ MY+K G +DS+  VF  + EK ++SWTA+++G   NG   
Sbjct: 353 CLIVKTGYATYKLVNNALVDMYAKRGIMDSALKVFEGMIEKDVISWTALVTGNTHNGSYD 412

Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
           EAL  F  MR     + D I   S+L+AS EL  LE   Q+HG   ++GFP   SV N L
Sbjct: 413 EALKLFCNMRVGGI-TPDKIVTASVLSASAELTLLEFGQQVHGNYIKSGFPSSLSVNNSL 471

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM-TETGEVP 453
           ++ Y+KCG+++ A ++F  M  +RD+++W  +I GY  NG  E A   +  M T  G  P
Sbjct: 472 VTMYTKCGSLEDANVIFNSME-IRDLITWTCLIVGYAKNGLLEDAQRYFDSMRTVYGITP 530

Query: 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL 513
               Y  +++  G +G      V   Q++ + +V+P    +  ++    + G + +    
Sbjct: 531 GPEHYACMIDLFGRSG----DFVKVEQLLHQMEVEPDATVWKAILAASRKHGNIENGERA 586

Query: 514 AGKLLEGMGPN--IWRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFLNSTSR 569
           A  L+E + PN  +    LS      GR  +A  +R   + + I K PG S++    +
Sbjct: 587 AKTLME-LEPNNAVPYVQLSNMYSAAGRQDEAANVRRLMKSRNISKEPGCSWVEEKGK 643


>gi|125597302|gb|EAZ37082.1| hypothetical protein OsJ_21424 [Oryza sativa Japonica Group]
          Length = 671

 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 159/562 (28%), Positives = 276/562 (49%), Gaps = 38/562 (6%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y  + LL +Y   G + +A  +FDE+P +NVVSWS++I   S  G    ++  F+ M+  
Sbjct: 38  YLCNNLLLSYQARGHLADARGVFDEMPRRNVVSWSVLIAASSRLGVLGDALSLFAGMLRG 97

Query: 66  GLL--PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
           G    PNSFT+  ++   A  ++      +H   VK G++ D                  
Sbjct: 98  GERDRPNSFTVAALVAGCARAKDAVAGEQVHASAVKLGVDEDESVAGTLVDMYAKCGRVG 157

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNK---LFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                F       ++S  +++A  +N+        A++LF       + P   T   +++
Sbjct: 158 SSWRAFVLTPQRSVLSWTSMIACLVNHGDSGYRDTAIVLFKKMLVLKVWPTNATFSCILK 217

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
                      + +HG  +K+G  +D ++  ++L MY     +D   ++   +   D  S
Sbjct: 218 VFDVPELLPSGKQVHGCLVKMGTEVDPALGTALLAMYGRCGGMDEITRLACRIR-HDAFS 276

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
            T ++  +       +A+++FR+M    +  D  A+ +L+ V + LG L+  K++H   +
Sbjct: 277 RTSLLTAYARNGCNMEAVRVFRDMLMGHMPIDQSAITSLLQVCSSLGQLRVVKEIHCYAL 336

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
               + +  L N+I+ +Y KCGD+ SS  VFN +  K  +SWTA+++ YVQN  ++EAL 
Sbjct: 337 KNFFRLDTLLLNAIVTVYGKCGDIASSEIVFNTLENKDTISWTALLTCYVQNDLSQEALF 396

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
            F +M ++  +S     + S+L A    ++L    Q+H    + G     SV+N L++ Y
Sbjct: 397 FFREMVRKGLES-SIFCITSVLRACSATSSLSCGWQIHSRVVKLGVDDDTSVENALVTMY 455

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
           +KCG V +A  +F  M   R ++SWN +I  +  +G+   A+ L+  M E    PD  T+
Sbjct: 456 AKCGVVQVALKIFNSMRN-RGIISWNALITSFSQHGNEVAAIQLFDMMQEEMVCPDDYTF 514

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
           + +L++C   GL  +G   F QM  +  ++P  EHY C+VDL ARAG  SDA     K +
Sbjct: 515 VGLLSSCSRMGLVAEGCEYFKQMKTKYNLEPKMEHYTCMVDLFARAGRFSDAM----KFI 570

Query: 519 EGMG--PN--IWRALLSGCVLH 536
           + M   P+  +W ALL+ C +H
Sbjct: 571 DAMPCQPDQLVWEALLASCRVH 592



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 107/489 (21%), Positives = 219/489 (44%), Gaps = 31/489 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVI-----HGYSINGFHEKSMKA 58
           D   +  L+  Y K G++  +   F   P+++V+SW+ +I     HG S  G+ + ++  
Sbjct: 139 DESVAGTLVDMYAKCGRVGSSWRAFVLTPQRSVLSWTSMIACLVNHGDS--GYRDTAIVL 196

Query: 59  FSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------L 106
           F  M++  + P + T   +L      + L   + +HG +VK G E D             
Sbjct: 197 FKKMLVLKVWPTNATFSCILKVFDVPELLPSGKQVHGCLVKMGTEVDPALGTALLAMYGR 256

Query: 107 FEGLKNPYLVSC---------NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
             G+     ++C          +++  +  N    +AV +F       +  +   + +++
Sbjct: 257 CGGMDEITRLACRIRHDAFSRTSLLTAYARNGCNMEAVRVFRDMLMGHMPIDQSAITSLL 316

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
           + C +LG   + + IH   +K    LD  + N+++ +Y    D+ ++  +F  +E KD I
Sbjct: 317 QVCSSLGQLRVVKEIHCYALKNFFRLDTLLLNAIVTVYGKCGDIASSEIVFNTLENKDTI 376

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           SWT ++  +V  + + +AL  FREM +  +      + +++   +    L  G Q+H++V
Sbjct: 377 SWTALLTCYVQNDLSQEALFFFREMVRKGLESSIFCITSVLRACSATSSLSCGWQIHSRV 436

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           V  G+  +  + N+++ MY+KCG +  +  +FN +  + ++SW A+I+ + Q+G    A+
Sbjct: 437 VKLGVDDDTSVENALVTMYAKCGVVQVALKIFNSMRNRGIISWNALITSFSQHGNEVAAI 496

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAAL-EICLQLHGIAFEAGFPRYRSVQNCLIS 396
            Q   M QE+    D  T V +L++   +  + E C     +  +           C++ 
Sbjct: 497 -QLFDMMQEEMVCPDDYTFVGLLSSCSRMGLVAEGCEYFKQMKTKYNLEPKMEHYTCMVD 555

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTE-TGEVPDS 455
            +++ G    A    + M    D + W  ++    V+G+ +       K+ E   E P  
Sbjct: 556 LFARAGRFSDAMKFIDAMPCQPDQLVWEALLASCRVHGNLDLGRMAAKKILEIKPEDPSP 615

Query: 456 STYLSILNA 464
              LS ++A
Sbjct: 616 YIILSSIHA 624



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 102/437 (23%), Positives = 193/437 (44%), Gaps = 30/437 (6%)

Query: 74  MVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFEGLK 111
           +  +L+  +G  +    R++HG  VK G  +                       +F+ + 
Sbjct: 5   LAALLLRGSGGHHHSHPRAVHGAAVKLGCLASTYLCNNLLLSYQARGHLADARGVFDEMP 64

Query: 112 NPYLVSCNAIVAGFINNKLFQQAVLLF-NFFRGSGL-VPNAVTMLTVIRGCVALGSRALC 169
              +VS + ++A      +   A+ LF    RG     PN+ T+  ++ GC         
Sbjct: 65  RRNVVSWSVLIAASSRLGVLGDALSLFAGMLRGGERDRPNSFTVAALVAGCARAKDAVAG 124

Query: 170 ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV-- 227
           E +H   +KLG+  D SV  +++DMY+    + ++ + F     + V+SWT M+   V  
Sbjct: 125 EQVHASAVKLGVDEDESVAGTLVDMYAKCGRVGSSWRAFVLTPQRSVLSWTSMIACLVNH 184

Query: 228 -DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
            D  Y   A+ +F++M   ++         ++ V  +   L  GKQ+H  +V  G + + 
Sbjct: 185 GDSGYRDTAIVLFKKMLVLKVWPTNATFSCILKVFDVPELLPSGKQVHGCLVKMGTEVDP 244

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            L  +++AMY +CG +D    +  +I   +  S T++++ Y +NGC  EA+  F  M   
Sbjct: 245 ALGTALLAMYGRCGGMDEITRLACRIRHDAF-SRTSLLTAYARNGCNMEAVRVFRDMLMG 303

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
               +D   + S+L     L  L +  ++H  A +  F     + N +++ Y KCG++  
Sbjct: 304 HM-PIDQSAITSLLQVCSSLGQLRVVKEIHCYALKNFFRLDTLLLNAIVTVYGKCGDIAS 362

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           + IVF  +   +D +SW  ++  Y  N   + AL  + +M   G         S+L AC 
Sbjct: 363 SEIVFNTLEN-KDTISWTALLTCYVQNDLSQEALFFFREMVRKGLESSIFCITSVLRACS 421

Query: 467 HAGLTNDGLVIFNQMIE 483
                + G  I +++++
Sbjct: 422 ATSSLSCGWQIHSRVVK 438


>gi|222616932|gb|EEE53064.1| hypothetical protein OsJ_35805 [Oryza sativa Japonica Group]
          Length = 841

 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 176/565 (31%), Positives = 282/565 (49%), Gaps = 61/565 (10%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIP-EKNVVSWSIVIHGYSINGFHEKSMKAF 59
           P  + Y+ + ++S Y ++G++  A  L D +P EK    ++ +I GY+ NG  E ++   
Sbjct: 100 PARNEYSWTIMVSCYVRAGELTLARELLDRMPGEKCAACYNTMISGYAKNGRFEDAIALL 159

Query: 60  SHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCN 119
             M    ++  +  + G++      +N E++RS+             F+ + +  LVS N
Sbjct: 160 QEMPAPDIVSWNSVLGGLI------RNEEISRSVQ-----------FFDEMPDKDLVSWN 202

Query: 120 AIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG-CVALGSRALCELIHGLTIK 178
            ++ G++       A   F+        PN ++ + ++ G C A       EL   +  +
Sbjct: 203 LMLEGYVRAGDLDVASAFFSRIPS----PNVISWVNLVNGYCQAGRMGEARELFDRMPER 258

Query: 179 LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKI 238
                +V   N +L  Y     ++AA  +F EM  K+ ISWT M+  FV      +A  +
Sbjct: 259 -----NVVAWNVLLSGYVQFSQVEAAYNLFIEMPEKNSISWTTMVSGFVRSGKLQEAKDV 313

Query: 239 FREMR---------------KSRIICDTVALLNLISV-------NAILGDLKRGKQLHAQ 276
             +M                KS +I D   L + I V         I G ++ G    A 
Sbjct: 314 LSKMPSDNVGAKTALMHGYLKSNLIDDARQLFDGIVVRDAVCWNTMISGYVQCGMLDEAM 373

Query: 277 VVLGGLQSELRLS-NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
           V+   + ++  +S N++IA  ++ G +  + S+F ++  ++ VSW +IISG+VQNG   E
Sbjct: 374 VLFQQMPNKDMISWNTMIAGCAQGGQIRKAASIFRKMKRRNTVSWNSIISGFVQNGLFVE 433

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLI 395
           AL  F+ MR++   S D  T    L+AS  LA L+I  Q H +    GF    S  N LI
Sbjct: 434 ALQHFMLMRRD-AKSADWCTYACCLSASANLATLQIGRQFHSLLVRTGFISDSSPGNALI 492

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
           S+Y+KCG +  A  VF+EM  ++D+VSWN +I GY  NG+G   +A++ +M      PD 
Sbjct: 493 SAYAKCGRMLEARQVFDEM-VVQDIVSWNALIDGYASNGNGSEVIAVFREMEANSVRPDE 551

Query: 456 STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAG 515
            T + +L+AC HAGL ++GL  FN MI+   +KP  EHY C+VDLL RAG L +A     
Sbjct: 552 ITLVVVLSACSHAGLIDEGLHFFNSMIKLYSLKPVAEHYTCMVDLLGRAGRLREAF---- 607

Query: 516 KLLEGM--GPN--IWRALLSGCVLH 536
           +L++GM   PN  +W ALL  C +H
Sbjct: 608 ELVQGMQIQPNAGVWGALLGACRVH 632


>gi|297833228|ref|XP_002884496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330336|gb|EFH60755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 547

 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 134/452 (29%), Positives = 236/452 (52%), Gaps = 25/452 (5%)

Query: 86  NLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSG 145
           NL  ARS+             FE +  P +   N+++ G+ N+    +A++ +      G
Sbjct: 55  NLSYARSV-------------FESIDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKG 101

Query: 146 LVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAI 205
             P+  T   V++ C  L        +HG  +K G  +++ V+  +L MY C  +++  +
Sbjct: 102 YSPDYFTFPYVLKACSGLRDIQFGSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNWGL 161

Query: 206 QIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILG 265
           ++F ++   +V++W  ++  FV+     DA++ FREM+   +  +   +++L+       
Sbjct: 162 RVFEDIPKLNVVAWGSLISGFVNNNRFSDAIEAFREMQSIGVKPNETIMVDLLVACGRCF 221

Query: 266 DLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIIS 325
           D     +    V+L         + S+I MY+KCGD+ ++R +F+ + E++LVSW +II+
Sbjct: 222 DPYCQSKFEFNVIL---------ATSLIDMYAKCGDMRTARYLFDGMPERNLVSWNSIIT 272

Query: 326 GYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFP 385
           GY QNG A EA+  F  M      + D +T  S++ AS      ++   +H    + GF 
Sbjct: 273 GYSQNGDAEEAMCMFSDMLDLGI-APDKVTFFSVIRASMIQGCSQLGQTIHAYVSKTGFV 331

Query: 386 RYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHK 445
           +  ++   L++ Y+K GN + A  +FE++   +D ++W  +I G   +GHG  AL+++ +
Sbjct: 332 KDAAIVCALVNMYAKTGNAESAKKMFEDLE-KKDTIAWTVVIIGLASHGHGNKALSIFQR 390

Query: 446 MTETGE-VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARA 504
           M E G   PD  TYL +L AC H GL  +G   F +M +   ++P+ EHYGC+VD+L+RA
Sbjct: 391 MQEEGNATPDGITYLGVLYACSHIGLVEEGQRYFAEMRDLYGLEPTVEHYGCMVDILSRA 450

Query: 505 GCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
           G   +A  L   +      NIW ALL+GC +H
Sbjct: 451 GRFEEAERLVKTMPVQPTANIWGALLNGCEIH 482



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 113/487 (23%), Positives = 222/487 (45%), Gaps = 45/487 (9%)

Query: 24  AENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAG 83
           A ++F+ I   +V  W+ +I GYS +   +K++  +  M+  G  P+ FT   VL A +G
Sbjct: 59  ARSVFESIDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSG 118

Query: 84  LQNLELARSIHGLMVKFGLESDL----------------------FEGLKNPYLVSCNAI 121
           L++++    +HG +VK G E ++                      FE +    +V+  ++
Sbjct: 119 LRDIQFGSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNWGLRVFEDIPKLNVVAWGSL 178

Query: 122 VAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGL 181
           ++GF+NN  F  A+  F   +  G+ PN   M+ ++  C     R               
Sbjct: 179 ISGFVNNNRFSDAIEAFREMQSIGVKPNETIMVDLLVAC----GRCFDPYCQS-----KF 229

Query: 182 ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFRE 241
             +V +  S++DMY+   D+  A  +F  M  ++++SW  ++  +     A +A+ +F +
Sbjct: 230 EFNVILATSLIDMYAKCGDMRTARYLFDGMPERNLVSWNSIITGYSQNGDAEEAMCMFSD 289

Query: 242 MRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGD 301
           M    I  D V   ++I  + I G  + G+ +HA V   G   +  +  +++ MY+K G+
Sbjct: 290 MLDLGIAPDKVTFFSVIRASMIQGCSQLGQTIHAYVSKTGFVKDAAIVCALVNMYAKTGN 349

Query: 302 LDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILT 361
            +S++ +F  + +K  ++WT +I G   +G   +AL+ F +M++E   + D IT + +L 
Sbjct: 350 AESAKKMFEDLEKKDTIAWTVVIIGLASHGHGNKALSIFQRMQEEGNATPDGITYLGVLY 409

Query: 362 ASGELAALE-------ICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM 414
           A   +  +E           L+G+  E     Y     C++   S+ G  + A  + + M
Sbjct: 410 ACSHIGLVEEGQRYFAEMRDLYGL--EPTVEHY----GCMVDILSRAGRFEEAERLVKTM 463

Query: 415 GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDG 474
                   W  ++ G  ++ + + A  +   ++E+ E+  S  Y+ + N    AG   D 
Sbjct: 464 PVQPTANIWGALLNGCEIHENLDLADRIRSMVSESEEL-GSGIYVLLSNIYAKAGRWADV 522

Query: 475 LVIFNQM 481
            +I   M
Sbjct: 523 KLIRESM 529



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 106/404 (26%), Positives = 190/404 (47%), Gaps = 19/404 (4%)

Query: 166 RALCEL--IHGLTIKLGLILDVSVNNSVLDMYSC---LMDLDAAIQIFREMECKDVISWT 220
           R++ EL  +HGL IK  +I +V   + ++D  +     M+L  A  +F  ++C  V  W 
Sbjct: 16  RSMVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDCPSVYIWN 75

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+  + +      AL  ++EM +     D      ++   + L D++ G  +H  VV  
Sbjct: 76  SMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSCVHGFVVKT 135

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           G +  + +S  ++ MY  CG+++    VF  I + ++V+W ++ISG+V N    +A+  F
Sbjct: 136 GFEVNMYVSTCLLHMYMCCGEVNWGLRVFEDIPKLNVVAWGSLISGFVNNNRFSDAIEAF 195

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            +M+       ++I +V +L A G       C   +    ++ F     +   LI  Y+K
Sbjct: 196 REMQSIGVKPNETI-MVDLLVACGR------CFDPYC---QSKFEFNVILATSLIDMYAK 245

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CG++  A  +F+ M   R++VSWN+II GY  NG  E A+ ++  M + G  PD  T+ S
Sbjct: 246 CGDMRTARYLFDGMP-ERNLVSWNSIITGYSQNGDAEEAMCMFSDMLDLGIAPDKVTFFS 304

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           ++ A    G +  G  I   + +   VK +      +V++ A+ G    A  +    LE 
Sbjct: 305 VIRASMIQGCSQLGQTIHAYVSKTGFVKDAA-IVCALVNMYAKTGNAESAKKMFED-LEK 362

Query: 521 MGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFL 564
                W  ++ G   H G    A ++    Q++G     GI++L
Sbjct: 363 KDTIAWTVVIIGLASH-GHGNKALSIFQRMQEEGNATPDGITYL 405



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 100/390 (25%), Positives = 191/390 (48%), Gaps = 25/390 (6%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           ++ Y S+ LL  Y   G++     +F++IP+ NVV+W  +I G+  N     +++AF  M
Sbjct: 139 VNMYVSTCLLHMYMCCGEVNWGLRVFEDIPKLNVVAWGSLISGFVNNNRFSDAIEAFREM 198

Query: 63  MLSGLLPNSFTMVGVLVAAAGL----------QNLELARSIHGLMVKFG---LESDLFEG 109
              G+ PN   MV +LVA               N+ LA S+  +  K G       LF+G
Sbjct: 199 QSIGVKPNETIMVDLLVACGRCFDPYCQSKFEFNVILATSLIDMYAKCGDMRTARYLFDG 258

Query: 110 LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALC 169
           +    LVS N+I+ G+  N   ++A+ +F+     G+ P+ VT  +VIR  +  G   L 
Sbjct: 259 MPERNLVSWNSIITGYSQNGDAEEAMCMFSDMLDLGIAPDKVTFFSVIRASMIQGCSQLG 318

Query: 170 ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDF 229
           + IH    K G + D ++  ++++MY+   + ++A ++F ++E KD I+WT ++      
Sbjct: 319 QTIHAYVSKTGFVKDAAIVCALVNMYAKTGNAESAKKMFEDLEKKDTIAWTVVIIGLASH 378

Query: 230 EYAGDALKIFREMRKS-RIICDTVALLNLISVNAILGDLKRGKQLHAQVV-LGGLQSELR 287
            +   AL IF+ M++      D +  L ++   + +G ++ G++  A++  L GL+  + 
Sbjct: 379 GHGNKALSIFQRMQEEGNATPDGITYLGVLYACSHIGLVEEGQRYFAEMRDLYGLEPTVE 438

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA-REALNQFIKMRQE 346
               ++ + S+ G  + +  +   +     V  TA I G + NGC   E L+   ++R  
Sbjct: 439 HYGCMVDILSRAGRFEEAERLVKTMP----VQPTANIWGALLNGCEIHENLDLADRIRSM 494

Query: 347 KTDSVD-----SITLVSILTASGELAALEI 371
            ++S +      + L +I   +G  A +++
Sbjct: 495 VSESEELGSGIYVLLSNIYAKAGRWADVKL 524



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 107/244 (43%), Gaps = 39/244 (15%)

Query: 2   CIDPYNSSK----------LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGF 51
           C DPY  SK          L+  Y K G ++ A  LFD +PE+N+VSW+ +I GYS NG 
Sbjct: 220 CFDPYCQSKFEFNVILATSLIDMYAKCGDMRTARYLFDGMPERNLVSWNSIITGYSQNGD 279

Query: 52  HEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------ 105
            E++M  FS M+  G+ P+  T   V+ A+      +L ++IH  + K G   D      
Sbjct: 280 AEEAMCMFSDMLDLGIAPDKVTFFSVIRASMIQGCSQLGQTIHAYVSKTGFVKDAAIVCA 339

Query: 106 ----------------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSG-LVP 148
                           +FE L+    ++   ++ G  ++    +A+ +F   +  G   P
Sbjct: 340 LVNMYAKTGNAESAKKMFEDLEKKDTIAWTVVIIGLASHGHGNKALSIFQRMQEEGNATP 399

Query: 149 NAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIF 208
           + +T L V+  C  +G      L+         + D+      ++ Y C++D+ +    F
Sbjct: 400 DGITYLGVLYACSHIG------LVEEGQRYFAEMRDLYGLEPTVEHYGCMVDILSRAGRF 453

Query: 209 REME 212
            E E
Sbjct: 454 EEAE 457


>gi|115488220|ref|NP_001066597.1| Os12g0289800 [Oryza sativa Japonica Group]
 gi|77554360|gb|ABA97156.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113649104|dbj|BAF29616.1| Os12g0289800 [Oryza sativa Japonica Group]
          Length = 756

 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 176/565 (31%), Positives = 282/565 (49%), Gaps = 61/565 (10%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIP-EKNVVSWSIVIHGYSINGFHEKSMKAF 59
           P  + Y+ + ++S Y ++G++  A  L D +P EK    ++ +I GY+ NG  E ++   
Sbjct: 100 PARNEYSWTIMVSCYVRAGELTLARELLDRMPGEKCAACYNTMISGYAKNGRFEDAIALL 159

Query: 60  SHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCN 119
             M    ++  +  + G++      +N E++RS+             F+ + +  LVS N
Sbjct: 160 QEMPAPDIVSWNSVLGGLI------RNEEISRSVQ-----------FFDEMPDKDLVSWN 202

Query: 120 AIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG-CVALGSRALCELIHGLTIK 178
            ++ G++       A   F+        PN ++ + ++ G C A       EL   +  +
Sbjct: 203 LMLEGYVRAGDLDVASAFFSRIPS----PNVISWVNLVNGYCQAGRMGEARELFDRMPER 258

Query: 179 LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKI 238
                +V   N +L  Y     ++AA  +F EM  K+ ISWT M+  FV      +A  +
Sbjct: 259 -----NVVAWNVLLSGYVQFSQVEAAYNLFIEMPEKNSISWTTMVSGFVRSGKLQEAKDV 313

Query: 239 FREMR---------------KSRIICDTVALLNLISV-------NAILGDLKRGKQLHAQ 276
             +M                KS +I D   L + I V         I G ++ G    A 
Sbjct: 314 LSKMPSDNVGAKTALMHGYLKSNLIDDARQLFDGIVVRDAVCWNTMISGYVQCGMLDEAM 373

Query: 277 VVLGGLQSELRLS-NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
           V+   + ++  +S N++IA  ++ G +  + S+F ++  ++ VSW +IISG+VQNG   E
Sbjct: 374 VLFQQMPNKDMISWNTMIAGCAQGGQIRKAASIFRKMKRRNTVSWNSIISGFVQNGLFVE 433

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLI 395
           AL  F+ MR++   S D  T    L+AS  LA L+I  Q H +    GF    S  N LI
Sbjct: 434 ALQHFMLMRRD-AKSADWCTYACCLSASANLATLQIGRQFHSLLVRTGFISDSSPGNALI 492

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
           S+Y+KCG +  A  VF+EM  ++D+VSWN +I GY  NG+G   +A++ +M      PD 
Sbjct: 493 SAYAKCGRMLEARQVFDEM-VVQDIVSWNALIDGYASNGNGSEVIAVFREMEANSVRPDE 551

Query: 456 STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAG 515
            T + +L+AC HAGL ++GL  FN MI+   +KP  EHY C+VDLL RAG L +A     
Sbjct: 552 ITLVVVLSACSHAGLIDEGLHFFNSMIKLYSLKPVAEHYTCMVDLLGRAGRLREAF---- 607

Query: 516 KLLEGM--GPN--IWRALLSGCVLH 536
           +L++GM   PN  +W ALL  C +H
Sbjct: 608 ELVQGMQIQPNAGVWGALLGACRVH 632


>gi|242084292|ref|XP_002442571.1| hypothetical protein SORBIDRAFT_08g022230 [Sorghum bicolor]
 gi|241943264|gb|EES16409.1| hypothetical protein SORBIDRAFT_08g022230 [Sorghum bicolor]
          Length = 698

 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 164/562 (29%), Positives = 272/562 (48%), Gaps = 34/562 (6%)

Query: 5   PYNSSKLLSNYFKSGK---IKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           P+N  +LL+ Y  SG    +  A  +FDEIP  + VSW+ ++  +   G H  + +    
Sbjct: 28  PWN--QLLTAYSASGPGSGLAAARRVFDEIPRPDAVSWNSLLAAHVAAGAHRDAWRLLKD 85

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF-------------- 107
           M   GL  ++F +   L +AA  +  EL   +    VK GL  ++F              
Sbjct: 86  MHARGLTASTFALGSALRSAAAARRPELGAQLQSFAVKSGLVDNVFSASALLDVYAKCGR 145

Query: 108 --------EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                   +G+     VS NA++AG+  ++   QA+ LF   +   LVP+  T   ++  
Sbjct: 146 LSDARRVFDGMPVRNTVSWNALIAGYAESRKPAQAMELFLEMQRVELVPDDATFAALLAT 205

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
                  +L + +HG   K G  L + V N+ +  YS       + +IF  ++ +D+ISW
Sbjct: 206 VEGPSWYSLMQQLHGKIAKYGSALGLVVLNAAITAYSQCGAFADSRRIFDGIQSRDLISW 265

Query: 220 TRMMGLFVDFEYAGDALKIF-REMRKSRIICDTVALLNLISVNAILG-DLKRGKQLHAQV 277
             M+G +       +A++ F R MR+S +  D  +  +++SV +  G D ++G+ +H+ V
Sbjct: 266 NSMLGAYAYHGMDDEAMRFFVRMMRESGVQPDMYSFTSVVSVCSEHGCDDRQGRSIHSLV 325

Query: 278 VLGGLQSELRLSNSIIAMYSKCGD---LDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
           V  GL+    + N++IAMY++  +   ++ +   F+ +  K  VSW ++++GY  +G + 
Sbjct: 326 VKIGLEGVTHVCNAMIAMYTRFTENCMMEDAYKCFDSLVFKDAVSWNSMLTGYSHHGLSS 385

Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
           +AL  F  MR E   S D   L + L +  +LA L +  Q+H +  ++GF     V + L
Sbjct: 386 DALRFFRFMRAENV-STDEFALSAALRSCSDLAVLRLGRQVHSLVIQSGFSSNDFVSSSL 444

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           I  YSKCG V  A   FEE       V WN++++GY  +G  +T   L+ +M +     D
Sbjct: 445 IFMYSKCGMVGDARKSFEEAD-KGSSVPWNSMMFGYAQHGQAQTVTDLFSEMLDHKVPLD 503

Query: 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLA 514
             T++++L A  H GL ++G  I N M    K+    EHY C VDL  RAG L  A  L 
Sbjct: 504 HVTFVALLTAYSHGGLVDEGSEILNSMETRYKIPLRMEHYACGVDLYGRAGQLDKAKELI 563

Query: 515 GKLLEGMGPNIWRALLSGCVLH 536
             +       +W  LL  C +H
Sbjct: 564 ESMPFQPDAMVWMTLLGACRIH 585



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 134/515 (26%), Positives = 244/515 (47%), Gaps = 44/515 (8%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           +++S LL  Y K G++ +A  +FD +P +N VSW+ +I GY+ +    ++M+ F  M   
Sbjct: 131 FSASALLDVYAKCGRLSDARRVFDGMPVRNTVSWNALIAGYAESRKPAQAMELFLEMQRV 190

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL----------------------E 103
            L+P+  T   +L    G     L + +HG + K+G                        
Sbjct: 191 ELVPDDATFAALLATVEGPSWYSLMQQLHGKIAKYGSALGLVVLNAAITAYSQCGAFADS 250

Query: 104 SDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLF-NFFRGSGLVPNAVTMLTVIRGCVA 162
             +F+G+++  L+S N+++  +  + +  +A+  F    R SG+ P+  +  +V+  C  
Sbjct: 251 RRIFDGIQSRDLISWNSMLGAYAYHGMDDEAMRFFVRMMRESGVQPDMYSFTSVVSVCSE 310

Query: 163 LGSRALCE-----LIHGLTIKLGLILDVSVNNSVLDMYS-----CLMDLDAAIQIFREME 212
            G    C+      IH L +K+GL     V N+++ MY+     C+M+   A + F  + 
Sbjct: 311 HG----CDDRQGRSIHSLVVKIGLEGVTHVCNAMIAMYTRFTENCMME--DAYKCFDSLV 364

Query: 213 CKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQ 272
            KD +SW  M+  +     + DAL+ FR MR   +  D  AL   +   + L  L+ G+Q
Sbjct: 365 FKDAVSWNSMLTGYSHHGLSSDALRFFRFMRAENVSTDEFALSAALRSCSDLAVLRLGRQ 424

Query: 273 LHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC 332
           +H+ V+  G  S   +S+S+I MYSKCG +  +R  F +  + S V W +++ GY Q+G 
Sbjct: 425 VHSLVIQSGFSSNDFVSSSLIFMYSKCGMVGDARKSFEEADKGSSVPWNSMMFGYAQHGQ 484

Query: 333 AREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQ-LHGIAFEAGFPRYRSVQ 391
           A+   + F +M   K   +D +T V++LTA      ++   + L+ +      P      
Sbjct: 485 AQTVTDLFSEMLDHKV-PLDHVTFVALLTAYSHGGLVDEGSEILNSMETRYKIPLRMEHY 543

Query: 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE 451
            C +  Y + G +D A  + E M F  D + W T++    ++G+ E A  +   +    E
Sbjct: 544 ACGVDLYGRAGQLDKAKELIESMPFQPDAMVWMTLLGACRIHGNMELASDVASHLF-VAE 602

Query: 452 VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENK 486
               STY+ + +     G+ +D   +  Q + +N+
Sbjct: 603 PRQHSTYVLLSSMYSGRGMWSDRATV--QKVMKNR 635


>gi|125529196|gb|EAY77310.1| hypothetical protein OsI_05285 [Oryza sativa Indica Group]
          Length = 785

 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 160/566 (28%), Positives = 279/566 (49%), Gaps = 32/566 (5%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P    +  + LL+ Y + G    A  L DE+P +N VS++++I  YS  G    S++  +
Sbjct: 39  PAASLFLRNTLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLA 98

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPYL--- 115
               +G+  + F+    L A +   +L   R++H L +  GL S +F    L + Y    
Sbjct: 99  RARRAGVDVDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCG 158

Query: 116 -----------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                            VS N++V+G++     ++ V +F   R  G+  N+  + +VI+
Sbjct: 159 EMGEARRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIK 218

Query: 159 GCVALG--SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
            C   G  +  + E +HG  IK GL  DV + ++++DMY+    L  A  +FR ++  +V
Sbjct: 219 CCSGRGDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNV 278

Query: 217 ISWTRMMGLF------VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG 270
           + +  M+  F      +  E A +AL ++ E++   +        +++    + G L+ G
Sbjct: 279 VMFNTMIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFG 338

Query: 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
           KQ+H QV+    Q +  + +++I +Y   G ++     F    +  +V+WTA++SG VQN
Sbjct: 339 KQIHGQVIKYTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQN 398

Query: 331 GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV 390
               +AL+ F +         D  T+ S++ A   LA      Q+   A ++GF R+  +
Sbjct: 399 ELHEKALSLFHESLGAGLKP-DLFTISSVMNACASLAVARAGEQIQCFATKSGFDRFTVM 457

Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
            N  +  Y++ G+VD A   F+EM    DVVSW+ +I  +  +G    AL  + +M +  
Sbjct: 458 GNSCVHMYARSGDVDAATRRFQEMES-HDVVSWSAVISCHAQHGCARDALHFFDEMVDAK 516

Query: 451 EVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
            VP+  T+L +L AC H GL ++GL  +  M ++  + P+ +H  CVVDLL RAG L+DA
Sbjct: 517 VVPNEITFLGVLTACSHGGLVDEGLRYYETMNKDYGLSPTIKHCTCVVDLLGRAGRLADA 576

Query: 511 SGLAGKLLEGMGPNIWRALLSGCVLH 536
                  +    P IWR+LL+ C +H
Sbjct: 577 EAFISNGIFHADPVIWRSLLASCRIH 602



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 126/503 (25%), Positives = 233/503 (46%), Gaps = 61/503 (12%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           + S+ L+S Y K G++ EA  +FD   E++ VSW+ ++ GY   G  E+ ++ F+ M   
Sbjct: 145 FVSNSLVSMYSKCGEMGEARRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRG 204

Query: 66  GLLPNSFTMVGVLVAAAGLQN--LELARSIHGLMVKFGLESD------------------ 105
           G+  NSF +  V+   +G  +  +++A ++HG ++K GL+SD                  
Sbjct: 205 GMGLNSFALGSVIKCCSGRGDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALV 264

Query: 106 ----LFEGLKNPYLVSCNAIVAGF------INNKLFQQAVLLFNFFRGSGLVPNAVTMLT 155
               LF  ++ P +V  N ++AGF      I  ++  +A+ L++  +  G+ P   T  +
Sbjct: 265 EAAALFRSVQEPNVVMFNTMIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSS 324

Query: 156 VIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMY---SCLMDLDAAIQIFREME 212
           V+R C   G     + IHG  IK     D  + ++++D+Y    C+ D     + FR   
Sbjct: 325 VLRACNLAGYLEFGKQIHGQVIKYTFQEDDFIGSALIDLYFNSGCMED---GFRCFRSSP 381

Query: 213 CKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQ 272
             D+++WT M+   V  E    AL +F E   + +  D   + ++++  A L   + G+Q
Sbjct: 382 KHDIVTWTAMVSGCVQNELHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVARAGEQ 441

Query: 273 LHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC 332
           +       G      + NS + MY++ GD+D++   F ++    +VSW+A+IS + Q+GC
Sbjct: 442 IQCFATKSGFDRFTVMGNSCVHMYARSGDVDAATRRFQEMESHDVVSWSAVISCHAQHGC 501

Query: 333 AREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ- 391
           AR+AL+ F +M   K    + IT + +LTA             HG   + G   Y ++  
Sbjct: 502 ARDALHFFDEMVDAKV-VPNEITFLGVLTACS-----------HGGLVDEGLRYYETMNK 549

Query: 392 -----------NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETAL 440
                       C++    + G +  A        F  D V W +++    ++   E   
Sbjct: 550 DYGLSPTIKHCTCVVDLLGRAGRLADAEAFISNGIFHADPVIWRSLLASCRIHRDLERGQ 609

Query: 441 ALYHKMTETGEVPDSSTYLSILN 463
            + +++ E  E   S++Y+ + N
Sbjct: 610 LVANRIMEL-EPTSSASYVILYN 631


>gi|414869047|tpg|DAA47604.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
          Length = 694

 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 167/564 (29%), Positives = 282/564 (50%), Gaps = 42/564 (7%)

Query: 5   PYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML 64
           P+N  +LL+ Y  +G +  A  +FDEIP  +  SW+ ++  +   G H  + +    M  
Sbjct: 28  PWN--QLLTAYSATG-LAAARRVFDEIPHPDAASWNSLLAAHVAAGAHRDAWRLLRAMHA 84

Query: 65  SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF----------------- 107
            GL  ++F +   L +AA  +  EL   +    V+ GL  ++F                 
Sbjct: 85  RGLAASTFALGSALRSAAAARRPELGAQLQSFSVRCGLADNVFPASALLDVYAKCGRLGD 144

Query: 108 -----EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA 162
                +G+    +VS NAI+AG+ +++   +A+ LF   +  G VP+  T   ++     
Sbjct: 145 ARRVFDGMPVRNIVSWNAIIAGYTDSRKPAEAMELFLEMQRVGSVPDGTTFAVLLATIAG 204

Query: 163 LGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
               +L   +HG  +K G  L +   N+ +  YS    L  + +IF  +E +D+ISW  M
Sbjct: 205 PRWYSLMRQLHGKIVKYGSALGLVALNAAITAYSQCDALADSRKIFDGIESRDLISWNSM 264

Query: 223 MGLFVDFEYAGDALKIF-REMRKSRIICDTVALLNLISVNAILG-DLKRGKQLHAQVVLG 280
           +G +       +A++ F R MR+S I  D  +  + ISV +  G D ++G+ +H+ V+  
Sbjct: 265 LGAYAYHGLDDEAMRFFVRMMRESGIQPDMYSFTSAISVCSEHGCDDQQGRSIHSLVIKF 324

Query: 281 GLQSELRLSNSIIAMYSKCGD---LDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           GL+    + N++IAMY++  D   ++ + + F+ +  K  VSW ++++GY  +G + +AL
Sbjct: 325 GLEGVTPVCNAMIAMYTRFADNCMMEDAYNCFSSLVFKDAVSWNSMLTGYSHHGLSSDAL 384

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
             F  MR E   + D   L + L +  +LA L +  Q+H +  ++GF     V + LI  
Sbjct: 385 KFFRCMRAENIRT-DEFGLSAALRSCSDLAVLRLGRQVHSLVVQSGFASNDFVSSSLIFM 443

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSS 456
           YSKCG +  A   FEE       V WN++++GY  +G  +T   L+++M +  EVP D  
Sbjct: 444 YSKCGVLGDARKSFEEAD-KSSSVPWNSMMFGYAQHGQAQTVTDLFNEMLDL-EVPLDHV 501

Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK 516
           T+++++ A  H GL ++G  I N M    K+    EHY C VDL  RAG L  A     +
Sbjct: 502 TFVALITAYSHGGLVDEGSEILNTMETRYKIPMRMEHYACGVDLYGRAGQLDKAK----E 557

Query: 517 LLEGMG--PN--IWRALLSGCVLH 536
           L+E M   P+  +W  LL  C +H
Sbjct: 558 LIESMPFQPDAIVWMTLLGACRIH 581



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 138/510 (27%), Positives = 239/510 (46%), Gaps = 32/510 (6%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           + +S LL  Y K G++ +A  +FD +P +N+VSW+ +I GY+ +    ++M+ F  M   
Sbjct: 127 FPASALLDVYAKCGRLGDARRVFDGMPVRNIVSWNAIIAGYTDSRKPAEAMELFLEMQRV 186

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL----------------------E 103
           G +P+  T   +L   AG +   L R +HG +VK+G                        
Sbjct: 187 GSVPDGTTFAVLLATIAGPRWYSLMRQLHGKIVKYGSALGLVALNAAITAYSQCDALADS 246

Query: 104 SDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLF-NFFRGSGLVPNAVTMLTVIRGCVA 162
             +F+G+++  L+S N+++  +  + L  +A+  F    R SG+ P+  +  + I  C  
Sbjct: 247 RKIFDGIESRDLISWNSMLGAYAYHGLDDEAMRFFVRMMRESGIQPDMYSFTSAISVCSE 306

Query: 163 LG-SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMD---LDAAIQIFREMECKDVIS 218
            G        IH L IK GL     V N+++ MY+   D   ++ A   F  +  KD +S
Sbjct: 307 HGCDDQQGRSIHSLVIKFGLEGVTPVCNAMIAMYTRFADNCMMEDAYNCFSSLVFKDAVS 366

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           W  M+  +     + DALK FR MR   I  D   L   +   + L  L+ G+Q+H+ VV
Sbjct: 367 WNSMLTGYSHHGLSSDALKFFRCMRAENIRTDEFGLSAALRSCSDLAVLRLGRQVHSLVV 426

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
             G  S   +S+S+I MYSKCG L  +R  F +  + S V W +++ GY Q+G A+   +
Sbjct: 427 QSGFASNDFVSSSLIFMYSKCGVLGDARKSFEEADKSSSVPWNSMMFGYAQHGQAQTVTD 486

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQ-LHGIAFEAGFPRYRSVQNCLISS 397
            F +M   +   +D +T V+++TA      ++   + L+ +      P       C +  
Sbjct: 487 LFNEMLDLEV-PLDHVTFVALITAYSHGGLVDEGSEILNTMETRYKIPMRMEHYACGVDL 545

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           Y + G +D A  + E M F  D + W T++    ++G+ E A  +   +    E    ST
Sbjct: 546 YGRAGQLDKAKELIESMPFQPDAIVWMTLLGACRIHGNMELASDVARHLF-VAEPRQHST 604

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKV 487
           Y+ + +     G+ +D   +  Q +  N+ 
Sbjct: 605 YVLLSSMYSGLGMWSDRATV--QKVMRNRA 632


>gi|302754942|ref|XP_002960895.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
 gi|300171834|gb|EFJ38434.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
          Length = 903

 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 161/552 (29%), Positives = 270/552 (48%), Gaps = 38/552 (6%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           LL  Y   G +  A  LF+++ E+++VSW+  I   + +G    +++ F  M L G+ P 
Sbjct: 169 LLHIYGSCGCVASAMLLFEKM-ERDLVSWNAAIAANAQSGDLGIALELFQRMQLEGVRPA 227

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------------FE 108
             T+V  L   A ++    A++IH ++ + GLE  L                      F+
Sbjct: 228 RITLVIALTVCATIRQ---AQAIHFIVRESGLEQTLVVSTALASAYARLGHLYQAKEVFD 284

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
                 +VS NA++  +  +    +A LLF      G+ P+ VT++    GC +L     
Sbjct: 285 RAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGISPSKVTLVNASTGCSSL---RF 341

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
             +IHG  ++ GL  D+ + N++LDMY+     + A  +F+ + C + +SW  M+     
Sbjct: 342 GRMIHGCALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFKRIPC-NAVSWNTMIAGSSQ 400

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKR----GKQLHAQVVLGGLQS 284
                 A+++F+ M+   +       LNL+   A   +  R    G++LH+++V  G  S
Sbjct: 401 KGQMKRAVELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYAS 460

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQ---ITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           E  +  +++ MY+ CG +D + + F +        +VSW AIIS   Q+G  + AL  F 
Sbjct: 461 EPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALGFFR 520

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +M      + + IT V++L A    AAL     +H     +G      V   L S Y +C
Sbjct: 521 RMDLHGV-APNQITCVAVLDACAGAAALTEGEIVHDHLRHSGMESNLFVATALASMYGRC 579

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G+++ A  +FE++   RDVV +N +I  Y  NG    AL L+ +M + G  PD  +++S+
Sbjct: 580 GSLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGEALKLFWRMQQEGSRPDEQSFVSV 639

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L+AC H GL ++G  IF  M +   + PS++HY C VD+L RAG L+DA  L   +    
Sbjct: 640 LSACSHGGLADEGWEIFRSMRQSYGIAPSEDHYACAVDVLGRAGWLADAEELIRCMDVKP 699

Query: 522 GPNIWRALLSGC 533
              +W+ LL  C
Sbjct: 700 TVLVWKTLLGAC 711



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 128/500 (25%), Positives = 236/500 (47%), Gaps = 39/500 (7%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           LL  Y K   + + E +F  +  ++  SW+ +I  Y+ +G  ++++  F  M   G+  +
Sbjct: 68  LLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITAYTEHGQAKRAIGMFHRMQQEGVRCD 127

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFE 108
           + T + VL A A L +L   RSIH  +V+ GL+                        LFE
Sbjct: 128 AVTFLAVLKACARLGDLSQGRSIHAWIVESGLKGKSVLANLLLHIYGSCGCVASAMLLFE 187

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            ++   LVS NA +A    +     A+ LF   +  G+ P  +T++  +  C  +     
Sbjct: 188 KMERD-LVSWNAAIAANAQSGDLGIALELFQRMQLEGVRPARITLVIALTVCATIRQ--- 243

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
            + IH +  + GL   + V+ ++   Y+ L  L  A ++F     +DV+SW  M+G +  
Sbjct: 244 AQAIHFIVRESGLEQTLVVSTALASAYARLGHLYQAKEVFDRAAERDVVSWNAMLGAYAQ 303

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILG--DLKRGKQLHAQVVLGGLQSEL 286
             +  +A  +F     +R++ + ++   +  VNA  G   L+ G+ +H   +  GL  ++
Sbjct: 304 HGHMSEAALLF-----ARMLHEGISPSKVTLVNASTGCSSLRFGRMIHGCALEKGLDRDI 358

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            L N+++ MY++CG  + +R +F +I   + VSW  +I+G  Q G  + A+  F +M+ E
Sbjct: 359 VLGNALLDMYTRCGSPEEARHLFKRIPCNA-VSWNTMIAGSSQKGQMKRAVELFQRMQLE 417

Query: 347 KTDSVDSI---TLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
               V +     L ++ +   E  A+    +LH      G+    ++   ++  Y+ CG 
Sbjct: 418 GMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCGA 477

Query: 404 VDLAYIVFEE--MGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           +D A   F+   M    DVVSWN II     +GHG+ AL  + +M   G  P+  T +++
Sbjct: 478 IDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAV 537

Query: 462 LNACGHAGLTNDGLVIFNQM 481
           L+AC  A    +G ++ + +
Sbjct: 538 LDACAGAAALTEGEIVHDHL 557



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 111/411 (27%), Positives = 200/411 (48%), Gaps = 30/411 (7%)

Query: 74  MVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYL------------------ 115
           +V +L AA   + L   R IH  +V  GLE +L   L   YL                  
Sbjct: 32  LVRLLRAAGDDRLLSQGRRIHARIVSLGLEEELGNHLLRLYLKCESLGDVEEVFSRLEVR 91

Query: 116 --VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIH 173
              S   I+  +  +   ++A+ +F+  +  G+  +AVT L V++ C  LG  +    IH
Sbjct: 92  DEASWTTIITAYTEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIH 151

Query: 174 GLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAG 233
              ++ GL     + N +L +Y     + +A+ +F +ME +D++SW   +         G
Sbjct: 152 AWIVESGLKGKSVLANLLLHIYGSCGCVASAMLLFEKME-RDLVSWNAAIAANAQSGDLG 210

Query: 234 DALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSII 293
            AL++F+ M+   +    + L+  ++V A    +++ + +H  V   GL+  L +S ++ 
Sbjct: 211 IALELFQRMQLEGVRPARITLVIALTVCAT---IRQAQAIHFIVRESGLEQTLVVSTALA 267

Query: 294 AMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDS 353
           + Y++ G L  ++ VF++  E+ +VSW A++  Y Q+G   EA   F +M  E      S
Sbjct: 268 SAYARLGHLYQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGI----S 323

Query: 354 ITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEE 413
            + V+++ AS   ++L     +HG A E G  R   + N L+  Y++CG+ + A  +F+ 
Sbjct: 324 PSKVTLVNASTGCSSLRFGRMIHGCALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFKR 383

Query: 414 MGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           +    + VSWNT+I G    G  + A+ L+ +M   G  P  +TYL++L A
Sbjct: 384 IPC--NAVSWNTMIAGSSQKGQMKRAVELFQRMQLEGMAPVRATYLNLLEA 432



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 127/518 (24%), Positives = 237/518 (45%), Gaps = 63/518 (12%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ L S Y + G + +A+ +FD   E++VVSW+ ++  Y+ +G   ++   F+ M+  G+
Sbjct: 263 STALASAYARLGHLYQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGI 322

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPYL---------- 115
            P+  T+V    A+ G  +L   R IHG  ++ GL+ D+  G  L + Y           
Sbjct: 323 SPSKVTLVN---ASTGCSSLRFGRMIHGCALEKGLDRDIVLGNALLDMYTRCGSPEEARH 379

Query: 116 ----VSCNAI-----VAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA--LG 164
               + CNA+     +AG       ++AV LF   +  G+ P   T L ++    +    
Sbjct: 380 LFKRIPCNAVSWNTMIAGSSQKGQMKRAVELFQRMQLEGMAPVRATYLNLLEAVASNPEE 439

Query: 165 SRALCE--LIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFRE--MECK-DVISW 219
           +RA+ E   +H   +  G   + ++  +V+ MY+    +D A   F+   ME + DV+SW
Sbjct: 440 ARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSW 499

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
             ++       +   AL  FR M    +  + +  + ++   A    L  G+ +H  +  
Sbjct: 500 NAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGEIVHDHLRH 559

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISGYVQNGCAREALN 338
            G++S L ++ ++ +MY +CG L+S+R +F ++  E+ +V + A+I+ Y QNG A EAL 
Sbjct: 560 SGMESNLFVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGEALK 619

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN------ 392
            F +M+QE +   D  + VS+L+A             HG   + G+  +RS++       
Sbjct: 620 LFWRMQQEGSRP-DEQSFVSVLSACS-----------HGGLADEGWEIFRSMRQSYGIAP 667

Query: 393 ------CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII---YGYGVNGHGETALALY 443
                 C +    + G +  A  +   M     V+ W T++     Y     G  A ++ 
Sbjct: 668 SEDHYACAVDVLGRAGWLADAEELIRCMDVKPTVLVWKTLLGACRKYRDVDRGRLANSMV 727

Query: 444 HKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQM 481
            ++    +  D S Y+ + N    AG  ++   +  +M
Sbjct: 728 REL----DPGDESAYVVLSNILAGAGKWDEAAEVRTEM 761



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 91/294 (30%), Positives = 148/294 (50%), Gaps = 8/294 (2%)

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           IH   + LGL  +  + N +L +Y     L    ++F  +E +D  SWT ++  + +   
Sbjct: 51  IHARIVSLGL--EEELGNHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITAYTEHGQ 108

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
           A  A+ +F  M++  + CD V  L ++   A LGDL +G+ +HA +V  GL+ +  L+N 
Sbjct: 109 AKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLKGKSVLANL 168

Query: 292 IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
           ++ +Y  CG + S+  +F ++ E+ LVSW A I+   Q+G    AL  F +M+ E     
Sbjct: 169 LLHIYGSCGCVASAMLLFEKM-ERDLVSWNAAIAANAQSGDLGIALELFQRMQLEGVRPA 227

Query: 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVF 411
             ITLV  LT     A +     +H I  E+G  +   V   L S+Y++ G++  A  VF
Sbjct: 228 -RITLVIALTV---CATIRQAQAIHFIVRESGLEQTLVVSTALASAYARLGHLYQAKEVF 283

Query: 412 EEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
           +     RDVVSWN ++  Y  +GH   A  L+ +M   G  P   T ++    C
Sbjct: 284 DRAAE-RDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGISPSKVTLVNASTGC 336



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 63/128 (49%), Gaps = 3/128 (2%)

Query: 356 LVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMG 415
           LV +L A+G+   L    ++H      G      + N L+  Y KC ++     VF  + 
Sbjct: 32  LVRLLRAAGDDRLLSQGRRIHARIVSLGLEE--ELGNHLLRLYLKCESLGDVEEVFSRLE 89

Query: 416 FLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGL 475
            +RD  SW TII  Y  +G  + A+ ++H+M + G   D+ T+L++L AC   G  + G 
Sbjct: 90  -VRDEASWTTIITAYTEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGR 148

Query: 476 VIFNQMIE 483
            I   ++E
Sbjct: 149 SIHAWIVE 156


>gi|15221304|ref|NP_177599.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169837|sp|Q9CA56.1|PP121_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g74600, chloroplastic; Flags: Precursor
 gi|12324789|gb|AAG52351.1|AC011765_3 hypothetical protein; 84160-81473 [Arabidopsis thaliana]
 gi|332197493|gb|AEE35614.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 895

 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 155/558 (27%), Positives = 273/558 (48%), Gaps = 32/558 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + ++  Y K G + EA  +F  IP  +VVSW++++ GY+ +     +++ F  M 
Sbjct: 284 DVFVCTAIVDLYAKCGHMAEAMEVFSRIPNPSVVSWTVMLSGYTKSNDAFSALEIFKEMR 343

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK--FGLESDLFEGLKNPYLVS---- 117
            SG+  N+ T+  V+ A      +  A  +H  + K  F L+S +   L + Y  S    
Sbjct: 344 HSGVEINNCTVTSVISACGRPSMVCEASQVHAWVFKSGFYLDSSVAAALISMYSKSGDID 403

Query: 118 -----------------CNAIVAGFINNKLFQQAVLLFNFFRGSGLVPN--AVTMLTVIR 158
                             N ++  F  +K   +A+ LF      GL  +  +V  L  + 
Sbjct: 404 LSEQVFEDLDDIQRQNIVNVMITSFSQSKKPGKAIRLFTRMLQEGLRTDEFSVCSLLSVL 463

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C+ LG +     +HG T+K GL+LD++V +S+  +YS    L+ + ++F+ +  KD   
Sbjct: 464 DCLNLGKQ-----VHGYTLKSGLVLDLTVGSSLFTLYSKCGSLEESYKLFQGIPFKDNAC 518

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           W  M+  F ++ Y  +A+ +F EM       D   L  +++V +    L RGK++H   +
Sbjct: 519 WASMISGFNEYGYLREAIGLFSEMLDDGTSPDESTLAAVLTVCSSHPSLPRGKEIHGYTL 578

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
             G+   + L ++++ MYSKCG L  +R V++++ E   VS +++ISGY Q+G  ++   
Sbjct: 579 RAGIDKGMDLGSALVNMYSKCGSLKLARQVYDRLPELDPVSCSSLISGYSQHGLIQDGFL 638

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
            F  M      ++DS  + SIL A+       +  Q+H    + G     SV + L++ Y
Sbjct: 639 LFRDMVMSGF-TMDSFAISSILKAAALSDESSLGAQVHAYITKIGLCTEPSVGSSLLTMY 697

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
           SK G++D     F ++    D+++W  +I  Y  +G    AL +Y+ M E G  PD  T+
Sbjct: 698 SKFGSIDDCCKAFSQING-PDLIAWTALIASYAQHGKANEALQVYNLMKEKGFKPDKVTF 756

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
           + +L+AC H GL  +     N M+++  ++P   HY C+VD L R+G L +A      + 
Sbjct: 757 VGVLSACSHGGLVEESYFHLNSMVKDYGIEPENRHYVCMVDALGRSGRLREAESFINNMH 816

Query: 519 EGMGPNIWRALLSGCVLH 536
                 +W  LL+ C +H
Sbjct: 817 IKPDALVWGTLLAACKIH 834



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 152/567 (26%), Positives = 270/567 (47%), Gaps = 40/567 (7%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
            D + +  LLS Y  SG + +A  LFD IP+ +VVS +I+I GY  +   E+S++ FS M
Sbjct: 82  FDVFLTKSLLSWYSNSGSMADAAKLFDTIPQPDVVSCNIMISGYKQHRLFEESLRFFSKM 141

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG------LESDLFE------GL 110
              G   N  +   V+ A + LQ    +  +    +K G      +ES L +        
Sbjct: 142 HFLGFEANEISYGSVISACSALQAPLFSELVCCHTIKMGYFFYEVVESALIDVFSKNLRF 201

Query: 111 KNPYLV----------SCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
           ++ Y V            N I+AG + N+ +     LF+        P++ T  +V+  C
Sbjct: 202 EDAYKVFRDSLSANVYCWNTIIAGALRNQNYGAVFDLFHEMCVGFQKPDSYTYSSVLAAC 261

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
            +L      +++    IK G   DV V  +++D+Y+    +  A+++F  +    V+SWT
Sbjct: 262 ASLEKLRFGKVVQARVIKCG-AEDVFVCTAIVDLYAKCGHMAEAMEVFSRIPNPSVVSWT 320

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+  +     A  AL+IF+EMR S +  +   + ++IS       +    Q+HA V   
Sbjct: 321 VMLSGYTKSNDAFSALEIFKEMRHSGVEINNCTVTSVISACGRPSMVCEASQVHAWVFKS 380

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVF---NQITEKSLVSWTAIISGYVQNGCAREAL 337
           G   +  ++ ++I+MYSK GD+D S  VF   + I  +++V+   +I+ + Q+    +A+
Sbjct: 381 GFYLDSSVAAALISMYSKSGDIDLSEQVFEDLDDIQRQNIVN--VMITSFSQSKKPGKAI 438

Query: 338 NQFIKMRQE--KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLI 395
             F +M QE  +TD     +L+S+L        L +  Q+HG   ++G     +V + L 
Sbjct: 439 RLFTRMLQEGLRTDEFSVCSLLSVLD------CLNLGKQVHGYTLKSGLVLDLTVGSSLF 492

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
           + YSKCG+++ +Y +F+ + F +D   W ++I G+   G+   A+ L+ +M + G  PD 
Sbjct: 493 TLYSKCGSLEESYKLFQGIPF-KDNACWASMISGFNEYGYLREAIGLFSEMLDDGTSPDE 551

Query: 456 STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAG 515
           ST  ++L  C        G  I    +    +    +    +V++ ++ G L  A  +  
Sbjct: 552 STLAAVLTVCSSHPSLPRGKEIHGYTLRAG-IDKGMDLGSALVNMYSKCGSLKLARQVYD 610

Query: 516 KLLEGMGPNIWRALLSGCVLHVGRFQD 542
           +L E + P    +L+SG   H G  QD
Sbjct: 611 RLPE-LDPVSCSSLISGYSQH-GLIQD 635



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 124/493 (25%), Positives = 228/493 (46%), Gaps = 33/493 (6%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLF---DEIPEKNVVSWSIVIHGYSINGFHEKSMKAF 59
           +D   ++ L+S Y KSG I  +E +F   D+I  +N+V+  ++I  +S +    K+++ F
Sbjct: 384 LDSSVAAALISMYSKSGDIDLSEQVFEDLDDIQRQNIVN--VMITSFSQSKKPGKAIRLF 441

Query: 60  SHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL------------- 106
           + M+  GL  + F++  +L     L  L L + +HG  +K GL  DL             
Sbjct: 442 TRMLQEGLRTDEFSVCSLLSV---LDCLNLGKQVHGYTLKSGLVLDLTVGSSLFTLYSKC 498

Query: 107 ---------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
                    F+G+         ++++GF      ++A+ LF+     G  P+  T+  V+
Sbjct: 499 GSLEESYKLFQGIPFKDNACWASMISGFNEYGYLREAIGLFSEMLDDGTSPDESTLAAVL 558

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
             C +  S    + IHG T++ G+   + + +++++MYS    L  A Q++  +   D +
Sbjct: 559 TVCSSHPSLPRGKEIHGYTLRAGIDKGMDLGSALVNMYSKCGSLKLARQVYDRLPELDPV 618

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           S + ++  +       D   +FR+M  S    D+ A+ +++   A+  +   G Q+HA +
Sbjct: 619 SCSSLISGYSQHGLIQDGFLLFRDMVMSGFTMDSFAISSILKAAALSDESSLGAQVHAYI 678

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
              GL +E  + +S++ MYSK G +D     F+QI    L++WTA+I+ Y Q+G A EAL
Sbjct: 679 TKIGLCTEPSVGSSLLTMYSKFGSIDDCCKAFSQINGPDLIAWTALIASYAQHGKANEAL 738

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEIC-LQLHGIAFEAGFPRYRSVQNCLIS 396
            Q   + +EK    D +T V +L+A      +E     L+ +  + G         C++ 
Sbjct: 739 -QVYNLMKEKGFKPDKVTFVGVLSACSHGGLVEESYFHLNSMVKDYGIEPENRHYVCMVD 797

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
           +  + G +  A      M    D + W T++    ++G  E       K  E  E  D+ 
Sbjct: 798 ALGRSGRLREAESFINNMHIKPDALVWGTLLAACKIHGEVELGKVAAKKAIEL-EPSDAG 856

Query: 457 TYLSILNACGHAG 469
            Y+S+ N     G
Sbjct: 857 AYISLSNILAEVG 869



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/278 (28%), Positives = 138/278 (49%), Gaps = 16/278 (5%)

Query: 261 NAILGDLKRGKQLHAQVVLGGLQS-ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVS 319
           N+ L +L+  K L A ++   L   ++ L+ S+++ YS  G +  +  +F+ I +  +VS
Sbjct: 58  NSRLCNLRTTKILQAHLLRRYLLPFDVFLTKSLLSWYSNSGSMADAAKLFDTIPQPDVVS 117

Query: 320 WTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIA 379
              +ISGY Q+    E+L  F KM     ++ + I+  S+++A   L A      +    
Sbjct: 118 CNIMISGYKQHRLFEESLRFFSKMHFLGFEA-NEISYGSVISACSALQAPLFSELVCCHT 176

Query: 380 FEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETA 439
            + G+  Y  V++ LI  +SK    + AY VF +     +V  WNTII G   N +    
Sbjct: 177 IKMGYFFYEVVESALIDVFSKNLRFEDAYKVFRD-SLSANVYCWNTIIAGALRNQNYGAV 235

Query: 440 LALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEH-YGC-- 496
             L+H+M    + PDS TY S+L AC  A L     + F ++++   +K   E  + C  
Sbjct: 236 FDLFHEMCVGFQKPDSYTYSSVLAAC--ASLEK---LRFGKVVQARVIKCGAEDVFVCTA 290

Query: 497 VVDLLARAGCLSDASGLAGKLLEGMGPNI--WRALLSG 532
           +VDL A+ G +++A  +  ++     P++  W  +LSG
Sbjct: 291 IVDLYAKCGHMAEAMEVFSRI---PNPSVVSWTVMLSG 325



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 44/81 (54%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C +P   S LL+ Y K G I +    F +I   ++++W+ +I  Y+ +G   ++++ ++ 
Sbjct: 684 CTEPSVGSSLLTMYSKFGSIDDCCKAFSQINGPDLIAWTALIASYAQHGKANEALQVYNL 743

Query: 62  MMLSGLLPNSFTMVGVLVAAA 82
           M   G  P+  T VGVL A +
Sbjct: 744 MKEKGFKPDKVTFVGVLSACS 764



 Score = 46.2 bits (108), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 38/182 (20%), Positives = 69/182 (37%), Gaps = 53/182 (29%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P +DP + S L+S Y + G I++   LF +                              
Sbjct: 613 PELDPVSCSSLISGYSQHGLIQDGFLLFRD------------------------------ 642

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--------------- 105
            M++SG   +SF +  +L AAA      L   +H  + K GL ++               
Sbjct: 643 -MVMSGFTMDSFAISSILKAAALSDESSLGAQVHAYITKIGLCTEPSVGSSLLTMYSKFG 701

Query: 106 -------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                   F  +  P L++  A++A +  +    +A+ ++N  +  G  P+ VT + V+ 
Sbjct: 702 SIDDCCKAFSQINGPDLIAWTALIASYAQHGKANEALQVYNLMKEKGFKPDKVTFVGVLS 761

Query: 159 GC 160
            C
Sbjct: 762 AC 763


>gi|297605857|ref|NP_001057684.2| Os06g0493800 [Oryza sativa Japonica Group]
 gi|255677066|dbj|BAF19598.2| Os06g0493800 [Oryza sativa Japonica Group]
          Length = 721

 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 162/565 (28%), Positives = 279/565 (49%), Gaps = 44/565 (7%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y  + LL +Y   G + +A  +FDE+P +NVVSWS++I   S  G    ++  F+ M+  
Sbjct: 38  YLCNNLLLSYQARGHLADARGVFDEMPRRNVVSWSVLIAASSRLGVLGDALSLFAGMLRG 97

Query: 66  GLL--PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
           G    PNSFT+  ++   A  ++      +H   VK G++ D                  
Sbjct: 98  GERDRPNSFTVAALVAGCARAKDAVAGEQVHASAVKLGVDEDESVAGTLVDMYAKCGRVG 157

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNK---LFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                F       ++S  +++A  +N+        A++LF       + P   T   +++
Sbjct: 158 SSWRAFVLTPQRSVLSWTSMIACLVNHGDSGYRDTAIVLFKKMLVLKVWPTNATFSCILK 217

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK---D 215
                      + +HG  +K+G  +D ++  ++L MY     +D   +I R + C+   D
Sbjct: 218 VFDVPELLPSGKQVHGCLVKMGTEVDPALGTALLAMYGRCGGMD---EITR-LACRIRHD 273

Query: 216 VISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
             S T ++  +       +A+++FR+M    +  D  A+ +L+ V + LG L+  K++H 
Sbjct: 274 AFSRTSLLTAYARNGCNMEAVRVFRDMLMGHMPIDQSAITSLLQVCSSLGQLRVVKEIHC 333

Query: 276 QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
             +    + +  L N+I+ +Y KCGD+ SS  VFN +  K  +SWTA+++ YVQN  ++E
Sbjct: 334 YALKNFFRLDTLLLNAIVTVYGKCGDIASSEIVFNTLENKDTISWTALLTCYVQNDLSQE 393

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLI 395
           AL  F +M ++  +S     + S+L A    ++L    Q+H    + G     SV+N L+
Sbjct: 394 ALFFFREMVRKGLES-SIFCITSVLRACSATSSLSCGWQIHSRVVKLGVDDDTSVENALV 452

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
           + Y+KCG V +A  +F  M   R ++SWN +I  +  +G+   A+ L+  M E    PD 
Sbjct: 453 TMYAKCGVVQVALKIFNSMRN-RGIISWNALITSFSQHGNEVAAIQLFDMMQEEMVCPDD 511

Query: 456 STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAG 515
            T++ +L++C   GL  +G   F QM  +  ++P  EHY C+VDL ARAG  SDA     
Sbjct: 512 YTFVGLLSSCSRMGLVAEGCEYFKQMKTKYNLEPKMEHYTCMVDLFARAGRFSDAM---- 567

Query: 516 KLLEGMG--PN--IWRALLSGCVLH 536
           K ++ M   P+  +W ALL+ C +H
Sbjct: 568 KFIDAMPCQPDQLVWEALLASCRVH 592



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 107/489 (21%), Positives = 219/489 (44%), Gaps = 31/489 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVI-----HGYSINGFHEKSMKA 58
           D   +  L+  Y K G++  +   F   P+++V+SW+ +I     HG S  G+ + ++  
Sbjct: 139 DESVAGTLVDMYAKCGRVGSSWRAFVLTPQRSVLSWTSMIACLVNHGDS--GYRDTAIVL 196

Query: 59  FSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------L 106
           F  M++  + P + T   +L      + L   + +HG +VK G E D             
Sbjct: 197 FKKMLVLKVWPTNATFSCILKVFDVPELLPSGKQVHGCLVKMGTEVDPALGTALLAMYGR 256

Query: 107 FEGLKNPYLVSC---------NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
             G+     ++C          +++  +  N    +AV +F       +  +   + +++
Sbjct: 257 CGGMDEITRLACRIRHDAFSRTSLLTAYARNGCNMEAVRVFRDMLMGHMPIDQSAITSLL 316

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
           + C +LG   + + IH   +K    LD  + N+++ +Y    D+ ++  +F  +E KD I
Sbjct: 317 QVCSSLGQLRVVKEIHCYALKNFFRLDTLLLNAIVTVYGKCGDIASSEIVFNTLENKDTI 376

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           SWT ++  +V  + + +AL  FREM +  +      + +++   +    L  G Q+H++V
Sbjct: 377 SWTALLTCYVQNDLSQEALFFFREMVRKGLESSIFCITSVLRACSATSSLSCGWQIHSRV 436

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           V  G+  +  + N+++ MY+KCG +  +  +FN +  + ++SW A+I+ + Q+G    A+
Sbjct: 437 VKLGVDDDTSVENALVTMYAKCGVVQVALKIFNSMRNRGIISWNALITSFSQHGNEVAAI 496

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAAL-EICLQLHGIAFEAGFPRYRSVQNCLIS 396
            Q   M QE+    D  T V +L++   +  + E C     +  +           C++ 
Sbjct: 497 -QLFDMMQEEMVCPDDYTFVGLLSSCSRMGLVAEGCEYFKQMKTKYNLEPKMEHYTCMVD 555

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTE-TGEVPDS 455
            +++ G    A    + M    D + W  ++    V+G+ +       K+ E   E P  
Sbjct: 556 LFARAGRFSDAMKFIDAMPCQPDQLVWEALLASCRVHGNLDLGRMAAKKILEIKPEDPSP 615

Query: 456 STYLSILNA 464
              LS ++A
Sbjct: 616 YIILSSIHA 624



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 102/437 (23%), Positives = 193/437 (44%), Gaps = 30/437 (6%)

Query: 74  MVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFEGLK 111
           +  +L+  +G  +    R++HG  VK G  +                       +F+ + 
Sbjct: 5   LAALLLRGSGGHHHSHPRAVHGAAVKLGCLASTYLCNNLLLSYQARGHLADARGVFDEMP 64

Query: 112 NPYLVSCNAIVAGFINNKLFQQAVLLF-NFFRGSGL-VPNAVTMLTVIRGCVALGSRALC 169
              +VS + ++A      +   A+ LF    RG     PN+ T+  ++ GC         
Sbjct: 65  RRNVVSWSVLIAASSRLGVLGDALSLFAGMLRGGERDRPNSFTVAALVAGCARAKDAVAG 124

Query: 170 ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV-- 227
           E +H   +KLG+  D SV  +++DMY+    + ++ + F     + V+SWT M+   V  
Sbjct: 125 EQVHASAVKLGVDEDESVAGTLVDMYAKCGRVGSSWRAFVLTPQRSVLSWTSMIACLVNH 184

Query: 228 -DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
            D  Y   A+ +F++M   ++         ++ V  +   L  GKQ+H  +V  G + + 
Sbjct: 185 GDSGYRDTAIVLFKKMLVLKVWPTNATFSCILKVFDVPELLPSGKQVHGCLVKMGTEVDP 244

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            L  +++AMY +CG +D    +  +I   +  S T++++ Y +NGC  EA+  F  M   
Sbjct: 245 ALGTALLAMYGRCGGMDEITRLACRIRHDAF-SRTSLLTAYARNGCNMEAVRVFRDMLMG 303

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
               +D   + S+L     L  L +  ++H  A +  F     + N +++ Y KCG++  
Sbjct: 304 HM-PIDQSAITSLLQVCSSLGQLRVVKEIHCYALKNFFRLDTLLLNAIVTVYGKCGDIAS 362

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           + IVF  +   +D +SW  ++  Y  N   + AL  + +M   G         S+L AC 
Sbjct: 363 SEIVFNTLEN-KDTISWTALLTCYVQNDLSQEALFFFREMVRKGLESSIFCITSVLRACS 421

Query: 467 HAGLTNDGLVIFNQMIE 483
                + G  I +++++
Sbjct: 422 ATSSLSCGWQIHSRVVK 438


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 154/540 (28%), Positives = 262/540 (48%), Gaps = 26/540 (4%)

Query: 17  KSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVG 76
           ++G++K  EN  D      ++S + ++ GY   G +   +K F  M+ S L  +  T + 
Sbjct: 268 EAGQVKSFENGNDASAVSEIISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFIL 327

Query: 77  VLVAAAGLQNLELARSIHGLMVKFGLE----------------------SDLFEGLKNPY 114
           VL  A  L +L L + +H + +K GL+                        +F  +    
Sbjct: 328 VLATAVRLDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERD 387

Query: 115 LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS-RALCELIH 173
           L+S N+++AG   + L  +AV LF      GL P+  TM +V++   +L    +L + IH
Sbjct: 388 LISWNSVIAGIAQSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIH 447

Query: 174 GLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAG 233
              IK   + D  V+ +++D YS    +  A  +F      D+++W  MM  +       
Sbjct: 448 VHAIKTNNVADSFVSTALIDAYSRNRCMKEAEVLFGRNNF-DLVAWNAMMSGYTQSHDGH 506

Query: 234 DALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSII 293
             L++F  M K     D   L  ++     L  + +GKQ+HA  +  G   +L +S+ I+
Sbjct: 507 KTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGIL 566

Query: 294 AMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDS 353
            MY KCGD+ +++  F+ I     V+WT +ISG ++NG    AL+ F +MR       D 
Sbjct: 567 DMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLP-DE 625

Query: 354 ITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEE 413
            T+ ++  AS  L ALE   Q+H  A +        V   L+  Y+KCG++D AY +F+ 
Sbjct: 626 FTIATLAKASSCLTALEQGRQIHANALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKR 685

Query: 414 MGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTND 473
           +  + ++ +WN ++ G   +G G+ AL L+ +M   G  PD  T++ +L+AC H+GL ++
Sbjct: 686 IEMM-NITAWNAMLVGLAQHGEGKEALQLFKQMESLGIKPDKVTFIGVLSACSHSGLVSE 744

Query: 474 GLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGC 533
                  M  +  +KP  EHY C+ D L RAG + +A  L   +      +++R LL+ C
Sbjct: 745 AYKYIRSMHRDYGIKPEIEHYSCLADALGRAGLVKEAENLIDSMSMEASASMYRTLLAAC 804



 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 154/568 (27%), Positives = 272/568 (47%), Gaps = 30/568 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + +  L++ Y K GK+KE   LF+E+P ++VV W++++  Y   GF E+++   S   
Sbjct: 186 DDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFH 245

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNP----YLVSCN 119
            SGL PN  T             L L   I G   + G +   FE   +      ++S N
Sbjct: 246 TSGLHPNEIT-------------LRLLSRISGDDSEAG-QVKSFENGNDASAVSEIISRN 291

Query: 120 AIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKL 179
            I++G+++   +   +  F     S L  + VT + V+   V L S AL + +H + +KL
Sbjct: 292 KILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHCMALKL 351

Query: 180 GLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIF 239
           GL L ++V+NS+++MY  L  +  A  +F  M  +D+ISW  ++      +   +A+ +F
Sbjct: 352 GLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLF 411

Query: 240 REMRKSRIICDTVALLNLISVNAILGD-LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSK 298
            ++ +  +  D   + +++   + L + L   KQ+H   +     ++  +S ++I  YS+
Sbjct: 412 MQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVSTALIDAYSR 471

Query: 299 CGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVS 358
              +  +  +F +     LV+W A++SGY Q+    + L  F  M ++   S D  TL +
Sbjct: 472 NRCMKEAEVLFGR-NNFDLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERS-DDFTLAT 529

Query: 359 ILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLR 418
           +L   G L A+    Q+H  A ++G+     V + ++  Y KCG++  A   F+ +  + 
Sbjct: 530 VLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIP-VP 588

Query: 419 DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIF 478
           D V+W T+I G   NG  E AL ++ +M   G +PD  T  ++  A         G  I 
Sbjct: 589 DDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIH 648

Query: 479 NQMIEENKVKPSQEHYGC-VVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHV 537
              ++ N    S    G  +VD+ A+ G + DA  L  K +E M    W A+L G   H 
Sbjct: 649 ANALKLNCT--SDPFVGTSLVDMYAKCGSIDDAYCLF-KRIEMMNITAWNAMLVGLAQHG 705

Query: 538 GRFQDAEALRSGSQKKGI-IKIPGISFL 564
              +  EAL+   Q + + IK   ++F+
Sbjct: 706 ---EGKEALQLFKQMESLGIKPDKVTFI 730



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 131/505 (25%), Positives = 240/505 (47%), Gaps = 28/505 (5%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ L++ Y K  KI  A  +F+ + E++++SW+ VI G + +    +++  F  ++  GL
Sbjct: 360 SNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCGL 419

Query: 68  LPNSFTMVGVLVAAAGL-QNLELARSIHGLMVKFG---------------------LESD 105
            P+ +TM  VL AA+ L + L L++ IH   +K                        E++
Sbjct: 420 KPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVSTALIDAYSRNRCMKEAE 479

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +  G  N  LV+ NA+++G+  +    + + LF      G   +  T+ TV++ C  L +
Sbjct: 480 VLFGRNNFDLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFA 539

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
               + +H   IK G  LD+ V++ +LDMY    D+ AA   F  +   D ++WT ++  
Sbjct: 540 INQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISG 599

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
            ++      AL +F +MR   ++ D   +  L   ++ L  L++G+Q+HA  +     S+
Sbjct: 600 CIENGEEERALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTSD 659

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
             +  S++ MY+KCG +D +  +F +I   ++ +W A++ G  Q+G  +EAL  F +M  
Sbjct: 660 PFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKEALQLFKQMES 719

Query: 346 E--KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
              K D V  I ++S  + SG ++  E    +  +  + G        +CL  +  + G 
Sbjct: 720 LGIKPDKVTFIGVLSACSHSGLVS--EAYKYIRSMHRDYGIKPEIEHYSCLADALGRAGL 777

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           V  A  + + M        + T++    V G  ET   +  K+ E  E  DSS Y+ + N
Sbjct: 778 VKEAENLIDSMSMEASASMYRTLLAACRVQGDTETGKRVATKLLEL-EPLDSSAYVLLSN 836

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVK 488
               A    D + +   M++ +KVK
Sbjct: 837 MYAAAS-KWDEMKLARTMMKGHKVK 860



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 138/555 (24%), Positives = 240/555 (43%), Gaps = 71/555 (12%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGY--SINGFHEKSMKAFSHMMLSGLL 68
           L+S Y K G +  A  +FD++PE+++VSW+ ++  Y  S  G  E   +AF   +L  +L
Sbjct: 87  LISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQSSEGVVENVKEAF---LLFRIL 143

Query: 69  PNSFTMVGVLVAAAGLQ------NLELARSIHGLMVKFGLESD----------------- 105
                    +  +  L+       +  + S HG   K GL+ D                 
Sbjct: 144 RQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIGLDGDDFVAGALVNIYLKFGKV 203

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                LFE +    +V  N ++  ++     ++A+ L + F  SGL PN +T+  + R  
Sbjct: 204 KEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHTSGLHPNEITLRLLSR-- 261

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
                      I G   + G +      N            DA+          ++IS  
Sbjct: 262 -----------ISGDDSEAGQVKSFENGN------------DAS-------AVSEIISRN 291

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
           +++  ++        LK F +M +S + CD V  + +++    L  L  G+Q+H   +  
Sbjct: 292 KILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHCMALKL 351

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           GL   L +SNS+I MY K   +  +R+VFN ++E+ L+SW ++I+G  Q+    EA+  F
Sbjct: 352 GLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLF 411

Query: 341 IKMRQEKTDSVDSITLVSILTASGELA-ALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           +++ +      D  T+ S+L A+  L   L +  Q+H  A +        V   LI +YS
Sbjct: 412 MQLLRCGLKP-DHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVSTALIDAYS 470

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           +   +  A ++F    F  D+V+WN ++ GY  +  G   L L+  M + GE  D  T  
Sbjct: 471 RNRCMKEAEVLFGRNNF--DLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLA 528

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519
           ++L  CG     N G  +    I+           G ++D+  + G +S A+  A   + 
Sbjct: 529 TVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSG-ILDMYVKCGDMS-AAQFAFDSIP 586

Query: 520 GMGPNIWRALLSGCV 534
                 W  L+SGC+
Sbjct: 587 VPDDVAWTTLISGCI 601



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/199 (34%), Positives = 99/199 (49%), Gaps = 11/199 (5%)

Query: 266 DLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIIS 325
           DL  GK  HA+++      E  L N++I+MYSKCG L  +R VF+++ E+ LVSW +I++
Sbjct: 61  DLMLGKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILA 120

Query: 326 GYVQN--GCAREALNQFIKMRQEKTDSV--DSITLVSILT---ASGELAALEICLQLHGI 378
            Y Q+  G        F+  R  + D V    +TL  +L     SG + A E     HG 
Sbjct: 121 AYAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASE---SFHGY 177

Query: 379 AFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGET 438
           A + G      V   L++ Y K G V    ++FEEM + RDVV WN ++  Y   G  E 
Sbjct: 178 ACKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPY-RDVVLWNLMLKAYLEMGFKEE 236

Query: 439 ALALYHKMTETGEVPDSST 457
           A+ L      +G  P+  T
Sbjct: 237 AIDLSSAFHTSGLHPNEIT 255



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 106/234 (45%), Gaps = 32/234 (13%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D + SS +L  Y K G +  A+  FD IP  + V+W+ +I G   NG  E+++  FS M
Sbjct: 557 LDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQM 616

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG------------L 110
            L G+LP+ FT+  +  A++ L  LE  R IH   +K    SD F G            +
Sbjct: 617 RLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTSDPFVGTSLVDMYAKCGSI 676

Query: 111 KNPY----------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
            + Y          + + NA++ G   +   ++A+ LF      G+ P+ VT + V+  C
Sbjct: 677 DDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKEALQLFKQMESLGIKPDKVTFIGVLSAC 736

Query: 161 VALG--SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME 212
              G  S A  + I  +    G+  ++       + YSCL D      + +E E
Sbjct: 737 SHSGLVSEAY-KYIRSMHRDYGIKPEI-------EHYSCLADALGRAGLVKEAE 782



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 62/283 (21%), Positives = 117/283 (41%), Gaps = 47/283 (16%)

Query: 189 NSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD-----FEYAGDALKIFREMR 243
           N+++ MYS    L  A ++F +M  +D++SW  ++  +        E   +A  +FR +R
Sbjct: 85  NNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQSSEGVVENVKEAFLLFRILR 144

Query: 244 KSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLD 303
           +  +    + L  ++ +    G +   +  H      GL  +  ++ +++ +Y K G + 
Sbjct: 145 QDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIGLDGDDFVAGALVNIYLKFGKVK 204

Query: 304 SSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTAS 363
             R +F ++  + +V W  ++  Y++ G   EA                 I L S    S
Sbjct: 205 EGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEA-----------------IDLSSAFHTS 247

Query: 364 GELAALEICLQL----HGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRD 419
           G L   EI L+L     G   EAG  + +S +N         GN         +   + +
Sbjct: 248 G-LHPNEITLRLLSRISGDDSEAG--QVKSFEN---------GN---------DASAVSE 286

Query: 420 VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
           ++S N I+ GY   G     L  +  M E+    D  T++ +L
Sbjct: 287 IISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVL 329


>gi|449462493|ref|XP_004148975.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 613

 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 152/511 (29%), Positives = 268/511 (52%), Gaps = 26/511 (5%)

Query: 46  YSINGFHEKSM-KAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES 104
           ++IN   +K + ++ + ++  GL  N+F +  ++ A           SI G + +  L  
Sbjct: 39  HAINHRSQKRIHQSHARVITHGLGQNTFLITKLISA----------YSICGDLKELNLIF 88

Query: 105 DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
           DL   +K  Y+   N++++G++   +F  A   FN  +   +VP+  T+  + +    LG
Sbjct: 89  DL-ASIKTVYI--WNSLISGYVKKGMFHGAFGRFNEMQKCNIVPDDFTLSILAKASNELG 145

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
           +  + + IHG +++LG I D+ V NS++ MY    +   ++++F EM  ++  SW  ++ 
Sbjct: 146 NVVVAKSIHGKSLRLGFISDIIVANSLMSMYFKYGECKESLKLFNEMPERNSGSWNVLLA 205

Query: 225 LFVDFE---YAGDALKIFREMRKSRIICDTVALLNLISV-NAILGDLKRGKQLHAQVVLG 280
            +  F    Y  +A +  R M+   I  D   + +L+       G L  GK+LH  +V  
Sbjct: 206 GYASFSDCFYVKEAWEAVRNMQLDGIKPDAFTISSLLQFCGHPNGKLSYGKELHCYIVKN 265

Query: 281 GLQ----SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
            L     S+  +   +I MYS+  +  +SR VF+QI  +++  WTA++SGY QN    +A
Sbjct: 266 ELDLDSGSKFHIGCGLIEMYSRENNTIASRYVFDQIKSRNIYVWTAMVSGYAQNEDPDKA 325

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
           L  F +M+ +     + ++LVS+L A    A L    Q+HG A    +    ++ N LI 
Sbjct: 326 LILFHEMQMKDGIVPNKVSLVSLLPACSLHAGLMNGKQIHGYAIRKEYHNDVTLCNALID 385

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
           +YSKCG+++ A  VFE   F +D +SW T+I  YG+ G  E ++ LY+ M E    PD  
Sbjct: 386 TYSKCGSLEYAKKVFESDSFCKDTISWTTLISAYGLYGLAEKSIRLYNDMVERSIKPDQI 445

Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK 516
           T L++L+ACG +GL N+GL ++N  ++E+K++P+ E    VV +L  +G L  A      
Sbjct: 446 TVLAVLSACGRSGLVNEGLQLYNTAVQEHKIEPTAEICAAVVYMLGNSGELEQAFSFIST 505

Query: 517 LLEGMGPNIWRALLSGCVLHVGRFQDAEALR 547
           ++   GP +W AL+S  +    ++++ E L 
Sbjct: 506 MMVEPGPGVWGALVSASI----KYRNNEMLE 532



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 107/405 (26%), Positives = 196/405 (48%), Gaps = 33/405 (8%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           +KL+S Y   G +KE   +FD    K V  W+ +I GY   G    +   F+ M    ++
Sbjct: 69  TKLISAYSICGDLKELNLIFDLASIKTVYIWNSLISGYVKKGMFHGAFGRFNEMQKCNIV 128

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------L 106
           P+ FT+  +  A+  L N+ +A+SIHG  ++ G  SD                      L
Sbjct: 129 PDDFTLSILAKASNELGNVVVAKSIHGKSLRLGFISDIIVANSLMSMYFKYGECKESLKL 188

Query: 107 FEGLKNPYLVSCNAIVAG---FINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC-VA 162
           F  +      S N ++AG   F +    ++A       +  G+ P+A T+ ++++ C   
Sbjct: 189 FNEMPERNSGSWNVLLAGYASFSDCFYVKEAWEAVRNMQLDGIKPDAFTISSLLQFCGHP 248

Query: 163 LGSRALCELIHGLTIKLGLILD----VSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            G  +  + +H   +K  L LD      +   +++MYS   +  A+  +F +++ +++  
Sbjct: 249 NGKLSYGKELHCYIVKNELDLDSGSKFHIGCGLIEMYSRENNTIASRYVFDQIKSRNIYV 308

Query: 219 WTRMMGLFVDFEYAGDALKIFREMR-KSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           WT M+  +   E    AL +F EM+ K  I+ + V+L++L+   ++   L  GKQ+H   
Sbjct: 309 WTAMVSGYAQNEDPDKALILFHEMQMKDGIVPNKVSLVSLLPACSLHAGLMNGKQIHGYA 368

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE-KSLVSWTAIISGYVQNGCAREA 336
           +     +++ L N++I  YSKCG L+ ++ VF   +  K  +SWT +IS Y   G A ++
Sbjct: 369 IRKEYHNDVTLCNALIDTYSKCGSLEYAKKVFESDSFCKDTISWTTLISAYGLYGLAEKS 428

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFE 381
           +  +  M  E++   D IT++++L+A G    +   LQL+  A +
Sbjct: 429 IRLYNDM-VERSIKPDQITVLAVLSACGRSGLVNEGLQLYNTAVQ 472



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 181/357 (50%), Gaps = 36/357 (10%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYS--INGFHEK-SMKAFSHMML 64
           ++ L+S YFK G+ KE+  LF+E+PE+N  SW++++ GY+   + F+ K + +A  +M L
Sbjct: 169 ANSLMSMYFKYGECKESLKLFNEMPERNSGSWNVLLAGYASFSDCFYVKEAWEAVRNMQL 228

Query: 65  SGLLPNSFTMVGVLVAAAGLQN--LELARSIHGLMVKFGLESD----------------- 105
            G+ P++FT +  L+   G  N  L   + +H  +VK  L+ D                 
Sbjct: 229 DGIKPDAFT-ISSLLQFCGHPNGKLSYGKELHCYIVKNELDLDSGSKFHIGCGLIEMYSR 287

Query: 106 ---------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFR-GSGLVPNAVTMLT 155
                    +F+ +K+  +    A+V+G+  N+   +A++LF+  +   G+VPN V++++
Sbjct: 288 ENNTIASRYVFDQIKSRNIYVWTAMVSGYAQNEDPDKALILFHEMQMKDGIVPNKVSLVS 347

Query: 156 VIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFR-EMECK 214
           ++  C         + IHG  I+     DV++ N+++D YS    L+ A ++F  +  CK
Sbjct: 348 LLPACSLHAGLMNGKQIHGYAIRKEYHNDVTLCNALIDTYSKCGSLEYAKKVFESDSFCK 407

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
           D ISWT ++  +  +  A  +++++ +M +  I  D + +L ++S     G +  G QL+
Sbjct: 408 DTISWTTLISAYGLYGLAEKSIRLYNDMVERSIKPDQITVLAVLSACGRSGLVNEGLQLY 467

Query: 275 AQVVL-GGLQSELRLSNSIIAMYSKCGDLDSSRS-VFNQITEKSLVSWTAIISGYVQ 329
              V    ++    +  +++ M    G+L+ + S +   + E     W A++S  ++
Sbjct: 468 NTAVQEHKIEPTAEICAAVVYMLGNSGELEQAFSFISTMMVEPGPGVWGALVSASIK 524



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 89/345 (25%), Positives = 153/345 (44%), Gaps = 28/345 (8%)

Query: 146 LVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAI 205
           L+  + ++L  ++  +   S+      H   I  GL  +  +   ++  YS   DL    
Sbjct: 26  LISPSPSLLHFLQHAINHRSQKRIHQSHARVITHGLGQNTFLITKLISAYSICGDLKELN 85

Query: 206 QIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILG 265
            IF     K V  W  ++  +V       A   F EM+K  I+ D   L  L   +  LG
Sbjct: 86  LIFDLASIKTVYIWNSLISGYVKKGMFHGAFGRFNEMQKCNIVPDDFTLSILAKASNELG 145

Query: 266 DLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIIS 325
           ++   K +H + +  G  S++ ++NS+++MY K G+   S  +FN++ E++  SW  +++
Sbjct: 146 NVVVAKSIHGKSLRLGFISDIIVANSLMSMYFKYGECKESLKLFNEMPERNSGSWNVLLA 205

Query: 326 GYVQNGCAREALNQFIKMRQEKTDSV--DSITLVSILTASGEL-AALEICLQLH------ 376
           GY            +  +R  + D +  D+ T+ S+L   G     L    +LH      
Sbjct: 206 GYASFSDCFYVKEAWEAVRNMQLDGIKPDAFTISSLLQFCGHPNGKLSYGKELHCYIVKN 265

Query: 377 ------GIAFEAGFPRYRSVQNC-LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYG 429
                 G  F  G         C LI  YS+  N   +  VF+++   R++  W  ++ G
Sbjct: 266 ELDLDSGSKFHIG---------CGLIEMYSRENNTIASRYVFDQIKS-RNIYVWTAMVSG 315

Query: 430 YGVNGHGETALALYHKMT-ETGEVPDSSTYLSILNACG-HAGLTN 472
           Y  N   + AL L+H+M  + G VP+  + +S+L AC  HAGL N
Sbjct: 316 YAQNEDPDKALILFHEMQMKDGIVPNKVSLVSLLPACSLHAGLMN 360


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 127/420 (30%), Positives = 236/420 (56%), Gaps = 2/420 (0%)

Query: 115 LVSCNAIVAGFINNKLFQQAVLLFN-FFRGSGLVPNAVTMLTVIRGCVALGSRALCELIH 173
           +++ N+++  F+N+ + ++A+  +      S  VP+  T  ++++GC  L    + +++H
Sbjct: 43  VLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLH 102

Query: 174 GLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAG 233
           G  +K  L  D+ +  ++L+MY+   DL +A  +F  M  ++ + WT M+  ++      
Sbjct: 103 GQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPN 162

Query: 234 DALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSII 293
           +AL ++++M +     D V +  L+S  A L DL  G +LH+ +    ++    L ++++
Sbjct: 163 EALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALV 222

Query: 294 AMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDS 353
            MY+KCGDL ++R VF+Q+++K + +W+A+I GYV+N  + EAL  F ++        + 
Sbjct: 223 NMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNE 282

Query: 354 ITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEE 413
           +T++++++A  +L  LE    +H            S+ N LI  +SKCG++D A  +F+ 
Sbjct: 283 VTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDS 342

Query: 414 MGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTND 473
           M + +D++SWN+++ G  ++G G  ALA +H M  T   PD  T++ +L AC HAGL  +
Sbjct: 343 MSY-KDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIGVLTACSHAGLVQE 401

Query: 474 GLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGC 533
           G  +F ++     V+   EHYGC+VDLL RAG L++A      +       IW ++L  C
Sbjct: 402 GKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGAC 461



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 102/381 (26%), Positives = 203/381 (53%), Gaps = 29/381 (7%)

Query: 9   SKLLSNYFKSGK--IKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM-LS 65
           +KL+++    G   +  A ++F      +V++W+ ++  +  +    +++++++ M+  S
Sbjct: 14  NKLIAHVLSMGSLGVGYAYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLERS 73

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL------------------- 106
             +P+ FT   +L   A L   ++ + +HG +VK+ L SDL                   
Sbjct: 74  RNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSA 133

Query: 107 ---FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
              FE + +   V   ++++G++ N    +A+LL+      G  P+ VTM T++  C  L
Sbjct: 134 RFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAEL 193

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
               +   +H    ++ + +   + +++++MY+   DL  A Q+F ++  KDV +W+ ++
Sbjct: 194 KDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALI 253

Query: 224 GLFVDFEYAGDALKIFREMR-KSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL 282
             +V    + +AL++FRE+   S +  + V +L +IS  A LGDL+ G+ +H  +     
Sbjct: 254 FGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQK 313

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
              + L+NS+I M+SKCGD+D+++ +F+ ++ K L+SW ++++G   +G  REAL QF  
Sbjct: 314 GHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGLALHGLGREALAQFHL 373

Query: 343 MRQEKTD-SVDSITLVSILTA 362
           M  + TD   D IT + +LTA
Sbjct: 374 M--QTTDLQPDEITFIGVLTA 392



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 140/297 (47%), Gaps = 23/297 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + LL+ Y   G +K A  LF+ +  +N V W+ +I GY  N    +++  +  M 
Sbjct: 113 DLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKME 172

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE-------------------- 103
             G  P+  TM  ++ A A L++L +   +H  + +  ++                    
Sbjct: 173 EDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLK 232

Query: 104 --SDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFR-GSGLVPNAVTMLTVIRGC 160
               +F+ L +  + + +A++ G++ N    +A+ LF     GS + PN VT+L VI  C
Sbjct: 233 TARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISAC 292

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             LG       +H    +      VS+NNS++DM+S   D+DAA +IF  M  KD+ISW 
Sbjct: 293 AQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWN 352

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
            M+          +AL  F  M+ + +  D +  + +++  +  G ++ GK+L  ++
Sbjct: 353 SMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEI 409


>gi|296085266|emb|CBI28998.3| unnamed protein product [Vitis vinifera]
          Length = 732

 Score =  233 bits (595), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 164/624 (26%), Positives = 281/624 (45%), Gaps = 62/624 (9%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C D ++ + L+  Y K G +     +F E+P KN+VSW++V+ G   NG  E  +  +  
Sbjct: 108 CNDIFSQNNLIRMYTKCGFLAGGLKVFGEMPMKNLVSWTLVVSGAVQNGEFEMGLGVYLE 167

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQ------NLELARSIHGLMVK--FGLES--------- 104
           M+ +GL+PN F +  V  A A L       NL   R IHGL+++   G  +         
Sbjct: 168 MIRTGLVPNEFALGCVTKACAALGGCLVVGNLNFGRQIHGLIIQSEVGFSTAVMNSLMDM 227

Query: 105 -----------DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTM 153
                       +F+ L++  ++S N + AG       ++    F+    +GL PN VT 
Sbjct: 228 YFKNGGGLYALKVFDRLQDKDIISWNTVFAGLSQGDDAREIGRFFHKLMLTGLKPNCVTF 287

Query: 154 LTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC 213
             + R C            H L  + G+  + SV +S+++M+S    +  A  +F     
Sbjct: 288 SILFRFCGEALDLVSGLQFHCLAFRFGISDEASVTSSLINMFSRCGAMRMACLVFDSAPF 347

Query: 214 KDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQL 273
           K + +   M+  +    +  +AL +F  +    +  D     + +       + K G+Q+
Sbjct: 348 KSIHTCNEMISGYNLNCHNAEALNLFCNLNGLGLEADECTFSSALEACFRTENQKLGRQM 407

Query: 274 HAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA 333
           H  +V  G  S+  + +S++  Y   G LD S   FN +    LVSW A+IS  V  G +
Sbjct: 408 HGTIVKSGFASQGYVCSSLLKCYVGFGLLDDSFEFFNGVERLDLVSWGAMISALVHKGYS 467

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC 393
            EA+    +++ E     D     SI      +AA      +H +  + G+  +  V + 
Sbjct: 468 SEAIGLLNRLK-EAGGKPDEFIFGSIFNCCAGIAAYRQTKSVHSLVVKMGYEAHVFVASA 526

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           +I +Y+KCG+++ A  VF++    RDV+ +NT++  Y  +G    A+  + KM      P
Sbjct: 527 VIDAYAKCGDIENARRVFDQTSRFRDVILFNTMVMAYAHHGLVREAVETFEKMKLATLEP 586

Query: 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL 513
             +T++S+++AC H GL   G + F  M  +  + PS ++YGC+VDL +R G L DA  +
Sbjct: 587 SQATFVSVISACSHLGLVEQGDIFFKSMNLDYGMDPSPDNYGCLVDLFSRNGFLEDAKHI 646

Query: 514 AGKLLEGMGPNIWRALLSGCVLH---------------------------------VGRF 540
              +     P IWR+LL+GC +H                                  G +
Sbjct: 647 IETMPFPPWPAIWRSLLNGCRIHGNKELGEWAAKKLLQLVPENDAAYVLLSKVYSEEGSW 706

Query: 541 QDAEALRSGSQKKGIIKIPGISFL 564
            DA  +R G  ++G+ K PG S++
Sbjct: 707 SDAAKVRKGMIERGLWKDPGCSWI 730



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 117/423 (27%), Positives = 187/423 (44%), Gaps = 40/423 (9%)

Query: 77  VLVAAAGLQNLELARSIHGLMVKFGLESDLFE----------------GLK------NPY 114
            L  +A  + + L   IH  ++K G  +D+F                 GLK         
Sbjct: 82  ALTHSANSKCILLGSQIHAQIIKLGFCNDIFSQNNLIRMYTKCGFLAGGLKVFGEMPMKN 141

Query: 115 LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL------GSRAL 168
           LVS   +V+G + N  F+  + ++     +GLVPN   +  V + C AL      G+   
Sbjct: 142 LVSWTLVVSGAVQNGEFEMGLGVYLEMIRTGLVPNEFALGCVTKACAALGGCLVVGNLNF 201

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
              IHGL I+  +    +V NS++DMY        A+++F  ++ KD+ISW     +F  
Sbjct: 202 GRQIHGLIIQSEVGFSTAVMNSLMDMYFKNGGGLYALKVFDRLQDKDIISWNT---VFAG 258

Query: 229 FEYAGDALKIFREMRKSRII-----CDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
                DA +I R   K  +      C T ++L      A+  DL  G Q H      G+ 
Sbjct: 259 LSQGDDAREIGRFFHKLMLTGLKPNCVTFSILFRFCGEAL--DLVSGLQFHCLAFRFGIS 316

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
            E  +++S+I M+S+CG +  +  VF+    KS+ +   +ISGY  N    EALN F  +
Sbjct: 317 DEASVTSSLINMFSRCGAMRMACLVFDSAPFKSIHTCNEMISGYNLNCHNAEALNLFCNL 376

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
                ++ D  T  S L A       ++  Q+HG   ++GF     V + L+  Y   G 
Sbjct: 377 NGLGLEA-DECTFSSALEACFRTENQKLGRQMHGTIVKSGFASQGYVCSSLLKCYVGFGL 435

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           +D ++  F  +  L D+VSW  +I      G+   A+ L +++ E G  PD   + SI N
Sbjct: 436 LDDSFEFFNGVERL-DLVSWGAMISALVHKGYSSEAIGLLNRLKEAGGKPDEFIFGSIFN 494

Query: 464 ACG 466
            C 
Sbjct: 495 CCA 497



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 112/228 (49%), Gaps = 14/228 (6%)

Query: 250 DTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVF 309
           D  AL   ++ +A    +  G Q+HAQ++  G  +++   N++I MY+KCG L     VF
Sbjct: 75  DPTALSTALTHSANSKCILLGSQIHAQIIKLGFCNDIFSQNNLIRMYTKCGFLAGGLKVF 134

Query: 310 NQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAAL 369
            ++  K+LVSWT ++SG VQNG     L  +++M   +T  V +   +  +T +   AAL
Sbjct: 135 GEMPMKNLVSWTLVVSGAVQNGEFEMGLGVYLEMI--RTGLVPNEFALGCVTKA--CAAL 190

Query: 370 EICL---------QLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDV 420
             CL         Q+HG+  ++      +V N L+  Y K G    A  VF+ +   +D+
Sbjct: 191 GGCLVVGNLNFGRQIHGLIIQSEVGFSTAVMNSLMDMYFKNGGGLYALKVFDRLQ-DKDI 249

Query: 421 VSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
           +SWNT+  G             +HK+  TG  P+  T+  +   CG A
Sbjct: 250 ISWNTVFAGLSQGDDAREIGRFFHKLMLTGLKPNCVTFSILFRFCGEA 297


>gi|449519723|ref|XP_004166884.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 636

 Score =  233 bits (595), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 151/504 (29%), Positives = 261/504 (51%), Gaps = 29/504 (5%)

Query: 52  HEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLK 111
           H+   +  +H    GL  N+F +  ++ A           SI G + +  L  DL   +K
Sbjct: 50  HQSHARVITH----GLGQNTFLITKLISA----------YSICGDLKELNLIFDL-ASIK 94

Query: 112 NPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCEL 171
             Y+   N++++G++   +F  A   FN  +   +VP+  T+  + +    LG+  + + 
Sbjct: 95  TVYI--WNSLISGYVKKGMFHGAFGRFNEMQKCNIVPDDFTLSILAKASNELGNVVVAKS 152

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFE- 230
           IHG +++LG I D+ V NS++ MY    +   ++++F EM  ++  SW  ++  +  F  
Sbjct: 153 IHGKSLRLGFISDIIVANSLISMYFKYGECKESLKLFNEMPERNSGSWNVLLAGYASFSD 212

Query: 231 --YAGDALKIFREMRKSRIICDTVALLNLISV-NAILGDLKRGKQLHAQVVLGGLQ---- 283
             Y  +A +  R M+   I  D   + +L+       G L  GK+LH  +V   L     
Sbjct: 213 CFYVKEAWEAVRNMQIDGIKPDAFTISSLLQFCGHPNGKLSYGKELHCYIVKNELDLDSG 272

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
           S+  +   +I MYS+  +  +SR VF+QI  +++  WTA++SGY QN    +AL  F +M
Sbjct: 273 SKFHIGCGLIEMYSRENNTIASRYVFDQIKSRNIYVWTAMVSGYAQNEDPDKALILFHEM 332

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
           + +     + ++LVS+L A    A L    Q+HG A    +    ++ N LI +YSKCG+
Sbjct: 333 QMKDGIVPNKVSLVSLLPACSLHAGLMNGKQIHGYAIRKEYHNDVTLCNALIDTYSKCGS 392

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           ++ A  VFE   F +D +SW T+I  YG+ G  E ++ LY+ M E    PD  T L++L+
Sbjct: 393 LEYAKKVFESDSFCKDTISWTTLISAYGLYGLAEKSIRLYNDMVERSIKPDQITVLAVLS 452

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
           ACG +GL N+GL ++N  ++E+K++P+ E    VV +L  +G L  A      ++   GP
Sbjct: 453 ACGRSGLVNEGLQLYNTAVQEHKIEPTAEICAAVVYMLGNSGELEQAFSFISTMMVEPGP 512

Query: 524 NIWRALLSGCVLHVGRFQDAEALR 547
            +W AL+S  +    ++++ E L 
Sbjct: 513 GVWGALVSASI----KYRNNEMLE 532



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 107/405 (26%), Positives = 196/405 (48%), Gaps = 33/405 (8%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           +KL+S Y   G +KE   +FD    K V  W+ +I GY   G    +   F+ M    ++
Sbjct: 69  TKLISAYSICGDLKELNLIFDLASIKTVYIWNSLISGYVKKGMFHGAFGRFNEMQKCNIV 128

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------L 106
           P+ FT+  +  A+  L N+ +A+SIHG  ++ G  SD                      L
Sbjct: 129 PDDFTLSILAKASNELGNVVVAKSIHGKSLRLGFISDIIVANSLISMYFKYGECKESLKL 188

Query: 107 FEGLKNPYLVSCNAIVAG---FINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC-VA 162
           F  +      S N ++AG   F +    ++A       +  G+ P+A T+ ++++ C   
Sbjct: 189 FNEMPERNSGSWNVLLAGYASFSDCFYVKEAWEAVRNMQIDGIKPDAFTISSLLQFCGHP 248

Query: 163 LGSRALCELIHGLTIKLGLILD----VSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            G  +  + +H   +K  L LD      +   +++MYS   +  A+  +F +++ +++  
Sbjct: 249 NGKLSYGKELHCYIVKNELDLDSGSKFHIGCGLIEMYSRENNTIASRYVFDQIKSRNIYV 308

Query: 219 WTRMMGLFVDFEYAGDALKIFREMR-KSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           WT M+  +   E    AL +F EM+ K  I+ + V+L++L+   ++   L  GKQ+H   
Sbjct: 309 WTAMVSGYAQNEDPDKALILFHEMQMKDGIVPNKVSLVSLLPACSLHAGLMNGKQIHGYA 368

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE-KSLVSWTAIISGYVQNGCAREA 336
           +     +++ L N++I  YSKCG L+ ++ VF   +  K  +SWT +IS Y   G A ++
Sbjct: 369 IRKEYHNDVTLCNALIDTYSKCGSLEYAKKVFESDSFCKDTISWTTLISAYGLYGLAEKS 428

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFE 381
           +  +  M  E++   D IT++++L+A G    +   LQL+  A +
Sbjct: 429 IRLYNDM-VERSIKPDQITVLAVLSACGRSGLVNEGLQLYNTAVQ 472



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 181/357 (50%), Gaps = 36/357 (10%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYS--INGFHEK-SMKAFSHMML 64
           ++ L+S YFK G+ KE+  LF+E+PE+N  SW++++ GY+   + F+ K + +A  +M +
Sbjct: 169 ANSLISMYFKYGECKESLKLFNEMPERNSGSWNVLLAGYASFSDCFYVKEAWEAVRNMQI 228

Query: 65  SGLLPNSFTMVGVLVAAAGLQN--LELARSIHGLMVKFGLESD----------------- 105
            G+ P++FT +  L+   G  N  L   + +H  +VK  L+ D                 
Sbjct: 229 DGIKPDAFT-ISSLLQFCGHPNGKLSYGKELHCYIVKNELDLDSGSKFHIGCGLIEMYSR 287

Query: 106 ---------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFR-GSGLVPNAVTMLT 155
                    +F+ +K+  +    A+V+G+  N+   +A++LF+  +   G+VPN V++++
Sbjct: 288 ENNTIASRYVFDQIKSRNIYVWTAMVSGYAQNEDPDKALILFHEMQMKDGIVPNKVSLVS 347

Query: 156 VIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFR-EMECK 214
           ++  C         + IHG  I+     DV++ N+++D YS    L+ A ++F  +  CK
Sbjct: 348 LLPACSLHAGLMNGKQIHGYAIRKEYHNDVTLCNALIDTYSKCGSLEYAKKVFESDSFCK 407

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
           D ISWT ++  +  +  A  +++++ +M +  I  D + +L ++S     G +  G QL+
Sbjct: 408 DTISWTTLISAYGLYGLAEKSIRLYNDMVERSIKPDQITVLAVLSACGRSGLVNEGLQLY 467

Query: 275 AQVVL-GGLQSELRLSNSIIAMYSKCGDLDSSRS-VFNQITEKSLVSWTAIISGYVQ 329
              V    ++    +  +++ M    G+L+ + S +   + E     W A++S  ++
Sbjct: 468 NTAVQEHKIEPTAEICAAVVYMLGNSGELEQAFSFISTMMVEPGPGVWGALVSASIK 524



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 153/345 (44%), Gaps = 28/345 (8%)

Query: 146 LVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAI 205
           L+  + ++L  ++  +   S+      H   I  GL  +  +   ++  YS   DL    
Sbjct: 26  LISPSPSLLHFLQHAINHRSQKRIHQSHARVITHGLGQNTFLITKLISAYSICGDLKELN 85

Query: 206 QIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILG 265
            IF     K V  W  ++  +V       A   F EM+K  I+ D   L  L   +  LG
Sbjct: 86  LIFDLASIKTVYIWNSLISGYVKKGMFHGAFGRFNEMQKCNIVPDDFTLSILAKASNELG 145

Query: 266 DLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIIS 325
           ++   K +H + +  G  S++ ++NS+I+MY K G+   S  +FN++ E++  SW  +++
Sbjct: 146 NVVVAKSIHGKSLRLGFISDIIVANSLISMYFKYGECKESLKLFNEMPERNSGSWNVLLA 205

Query: 326 GYVQNGCAREALNQFIKMRQEKTDSV--DSITLVSILTASGEL-AALEICLQLH------ 376
           GY            +  +R  + D +  D+ T+ S+L   G     L    +LH      
Sbjct: 206 GYASFSDCFYVKEAWEAVRNMQIDGIKPDAFTISSLLQFCGHPNGKLSYGKELHCYIVKN 265

Query: 377 ------GIAFEAGFPRYRSVQNC-LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYG 429
                 G  F  G         C LI  YS+  N   +  VF+++   R++  W  ++ G
Sbjct: 266 ELDLDSGSKFHIG---------CGLIEMYSRENNTIASRYVFDQIKS-RNIYVWTAMVSG 315

Query: 430 YGVNGHGETALALYHKMT-ETGEVPDSSTYLSILNACG-HAGLTN 472
           Y  N   + AL L+H+M  + G VP+  + +S+L AC  HAGL N
Sbjct: 316 YAQNEDPDKALILFHEMQMKDGIVPNKVSLVSLLPACSLHAGLMN 360


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  233 bits (595), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 152/491 (30%), Positives = 245/491 (49%), Gaps = 40/491 (8%)

Query: 110 LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALC 169
           LKN +L   N+++ G+  N    +A+ L+      G  P+  T   V++ C  L  R + 
Sbjct: 86  LKNSFL--WNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKACGDLLLREMG 143

Query: 170 ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDF 229
             +H L +  GL  DV V NS+L MY    D++AA  +F  M  +D+ SW  MM  FV  
Sbjct: 144 RKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGFVKN 203

Query: 230 EYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL--- 286
             A  A ++F +MR+   + D   LL L+S    + DLK GK++H  VV  G    +   
Sbjct: 204 GEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNGESGRVCNG 263

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            L NSII MY  C  +  +R +F  +  K +VSW ++ISGY + G A +AL  F +M   
Sbjct: 264 FLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAFQALELFGRMVVV 323

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
                D +T++S+L A  +++AL +   +     + G+     V   LI  Y+ CG++  
Sbjct: 324 GAVP-DEVTVISVLAACNQISALRLGATVQSYVVKRGYVVNVVVGTALIGMYANCGSLVC 382

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           A  VF+EM   +++ +   ++ G+G++G G  A++++++M   G  PD   + ++L+AC 
Sbjct: 383 ACRVFDEMP-EKNLPACTVMVTGFGIHGRGREAISIFYEMLGKGVTPDEGIFTAVLSACS 441

Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIW 526
           H+GL ++G  IF +M  +  V+P   HY C+VDLL RAG L +A  +   +      ++W
Sbjct: 442 HSGLVDEGKEIFYKMTRDYSVEPRPTHYSCLVDLLGRAGYLDEAYAVIENMKLKPNEDVW 501

Query: 527 RALLSGCVLHVG---------------------------------RFQDAEALRSGSQKK 553
            ALLS C LH                                   R++D E +R+   K+
Sbjct: 502 TALLSACRLHRNVKLAVISAQKLFELNPDGVSGYVCLSNIYAAERRWEDVENVRALVAKR 561

Query: 554 GIIKIPGISFL 564
            + K P  SF+
Sbjct: 562 RLRKPPSYSFV 572



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 118/458 (25%), Positives = 216/458 (47%), Gaps = 43/458 (9%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           + Y ++KL + Y   G +  A+++FD+I  KN   W+ +I GY+ N    +++  +  M+
Sbjct: 57  NTYLATKLAACYAVCGHMPYAQHIFDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKML 116

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPY------- 114
             G  P++FT   VL A   L   E+ R +H L+V  GLE D++ G  + + Y       
Sbjct: 117 HFGQKPDNFTYPFVLKACGDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVE 176

Query: 115 -------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                        L S N +++GF+ N   + A  +F   R  G V +  T+L ++  C 
Sbjct: 177 AARVVFDRMLVRDLTSWNTMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACG 236

Query: 162 ALGSRALCELIHGLTIK---LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            +    + + IHG  ++    G + +  + NS++DMY     +  A ++F  +  KDV+S
Sbjct: 237 DVMDLKVGKEIHGYVVRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVS 296

Query: 219 WTRMMGLFVDFEYAGD---ALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
           W     L   +E  GD   AL++F  M     + D V ++++++    +  L+ G  + +
Sbjct: 297 WN---SLISGYEKCGDAFQALELFGRMVVVGAVPDEVTVISVLAACNQISALRLGATVQS 353

Query: 276 QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
            VV  G    + +  ++I MY+ CG L  +  VF+++ EK+L + T +++G+  +G  RE
Sbjct: 354 YVVKRGYVVNVVVGTALIGMYANCGSLVCACRVFDEMPEKNLPACTVMVTGFGIHGRGRE 413

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ---- 391
           A++ F +M   K  + D     ++L+A      ++      G        R  SV+    
Sbjct: 414 AISIFYEMLG-KGVTPDEGIFTAVLSACSHSGLVD-----EGKEIFYKMTRDYSVEPRPT 467

Query: 392 --NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
             +CL+    + G +D AY V E M    +   W  ++
Sbjct: 468 HYSCLVDLLGRAGYLDEAYAVIENMKLKPNEDVWTALL 505



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/270 (29%), Positives = 132/270 (48%), Gaps = 8/270 (2%)

Query: 267 LKRGKQLHAQVVLGG-LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIIS 325
           L +  QLHA V  GG L+    L+  + A Y+ CG +  ++ +F+QI  K+   W ++I 
Sbjct: 38  LTQALQLHAHVTTGGTLRRNTYLATKLAACYAVCGHMPYAQHIFDQIVLKNSFLWNSMIR 97

Query: 326 GYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFP 385
           GY  N     AL  ++KM        D+ T   +L A G+L   E+  ++H +    G  
Sbjct: 98  GYACNNSPSRALFLYLKMLHFGQKP-DNFTYPFVLKACGDLLLREMGRKVHALVVVGGLE 156

Query: 386 RYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHK 445
               V N ++S Y K G+V+ A +VF+ M  +RD+ SWNT++ G+  NG    A  ++  
Sbjct: 157 EDVYVGNSILSMYFKFGDVEAARVVFDRM-LVRDLTSWNTMMSGFVKNGEARGAFEVFGD 215

Query: 446 MTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAG 505
           M   G V D +T L++L+ACG       G  I   ++     +  +   G +++ +    
Sbjct: 216 MRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNG--ESGRVCNGFLMNSIIDMY 273

Query: 506 CLSDASGLAGKLLEGMGPN---IWRALLSG 532
           C  ++   A KL EG+       W +L+SG
Sbjct: 274 CNCESVSCARKLFEGLRVKDVVSWNSLISG 303



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 163/350 (46%), Gaps = 27/350 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + +LS YFK G ++ A  +FD +  +++ SW+ ++ G+  NG    + + F  M 
Sbjct: 158 DVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGFVKNGEARGAFEVFGDMR 217

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG---------------------- 101
             G + +  T++ +L A   + +L++ + IHG +V+ G                      
Sbjct: 218 RDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNGESGRVCNGFLMNSIIDMYCNCE 277

Query: 102 ---LESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                  LFEGL+   +VS N++++G+       QA+ LF      G VP+ VT+++V+ 
Sbjct: 278 SVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAFQALELFGRMVVVGAVPDEVTVISVLA 337

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C  + +  L   +    +K G +++V V  +++ MY+    L  A ++F EM  K++ +
Sbjct: 338 ACNQISALRLGATVQSYVVKRGYVVNVVVGTALIGMYANCGSLVCACRVFDEMPEKNLPA 397

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
            T M+  F       +A+ IF EM    +  D      ++S  +  G +  GK++  ++ 
Sbjct: 398 CTVMVTGFGIHGRGREAISIFYEMLGKGVTPDEGIFTAVLSACSHSGLVDEGKEIFYKMT 457

Query: 279 LG-GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVS-WTAIISG 326
               ++      + ++ +  + G LD + +V   +  K     WTA++S 
Sbjct: 458 RDYSVEPRPTHYSCLVDLLGRAGYLDEAYAVIENMKLKPNEDVWTALLSA 507


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  233 bits (595), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 145/486 (29%), Positives = 254/486 (52%), Gaps = 32/486 (6%)

Query: 90  ARSIHGLMVKFGLESD----------------------LFEGLKNPYLVSCNAIVAGFIN 127
           AR++HGL V  G  +D                      +F+ + +P  +  N ++AG   
Sbjct: 133 ARTLHGLSVAAGYAADTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLLAGLPG 192

Query: 128 NKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSV 187
           ++  +  V + +  R   + P++ T+ + +R        A+   +HG  +K GL     V
Sbjct: 193 SEALEAFVRMVDAGR---VRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEHV 249

Query: 188 NNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRI 247
              ++ +YS   D+D+A  +F  M+  D++++  ++  +        ++++F+E+  S  
Sbjct: 250 VTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTASGW 309

Query: 248 ICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRS 307
             ++  L+ +I V +  G     + LHA VV   L ++  +S ++  +Y +  D++S+RS
Sbjct: 310 RPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARS 369

Query: 308 VFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELA 367
           +F+ + EK++ SW A+ISGY QNG    A+  F ++ QE     + IT+ S L+A   L 
Sbjct: 370 IFDAMLEKTMESWNAMISGYAQNGLTEMAVALF-QLMQELNVQPNPITISSTLSACAHLG 428

Query: 368 ALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
           AL +   +H I  +        V   LI  Y+KCG++  A  +F+ M   ++VVSWN +I
Sbjct: 429 ALSLGKWVHRIISKEKLELNVYVMTALIDMYAKCGSIAEARSIFDRMDN-KNVVSWNAMI 487

Query: 428 YGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKV 487
            GYG++G G  AL LY  M +   +P SST+LS++ AC H GL ++G  +F  M  E ++
Sbjct: 488 SGYGLHGQGAEALKLYKDMLDARILPTSSTFLSVIYACSHGGLVDEGQKVFRVMTNEYRI 547

Query: 488 KPSQEHYGCVVDLLARAGCLSDASGLAGKLLE-GMGPNIWRALLSGCVLHVGRFQDAEAL 546
            P  EH  C+VDLL RAG L++A  L  +  +  +GP +W ALL  C++H    ++++  
Sbjct: 548 TPGIEHCTCMVDLLGRAGKLNEALELISEFPQSAIGPGVWGALLGACMVH----KNSDLA 603

Query: 547 RSGSQK 552
           +  SQK
Sbjct: 604 KLASQK 609



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 108/382 (28%), Positives = 192/382 (50%), Gaps = 28/382 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + +S L   YFK  +  +A  +FD +P  + + W+ ++ G  + G   ++++AF  M+
Sbjct: 148 DTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLLAG--LPG--SEALEAFVRMV 203

Query: 64  LSGLL-PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
            +G + P+S T+   L AAA   ++ + R +HG  VK GL                    
Sbjct: 204 DAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKCGDM 263

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                LF+ + NP LV+ NA+++G+  N + + +V LF     SG  PN+ T++ VI   
Sbjct: 264 DSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTASGWRPNSSTLVAVIPVY 323

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
              G   L   +H   +K  L  D  V+ ++  +Y  L D+++A  IF  M  K + SW 
Sbjct: 324 SPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESWN 383

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+  +        A+ +F+ M++  +  + + + + +S  A LG L  GK +H  +   
Sbjct: 384 AMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLGALSLGKWVHRIISKE 443

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
            L+  + +  ++I MY+KCG +  +RS+F+++  K++VSW A+ISGY  +G   EAL  +
Sbjct: 444 KLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISGYGLHGQGAEALKLY 503

Query: 341 IKMRQEKTDSVDSITLVSILTA 362
             M   +     S T +S++ A
Sbjct: 504 KDMLDARILPTSS-TFLSVIYA 524



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 134/272 (49%), Gaps = 17/272 (6%)

Query: 266 DLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIIS 325
           D    + LH   V  G  ++  +++++  +Y K    D +R VF+ +     + W  +++
Sbjct: 129 DAAAARTLHGLSVAAGYAADTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLLA 188

Query: 326 GYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFP 385
           G   +    EAL  F++M        DS TL S L A+ E + + +   +HG   + G  
Sbjct: 189 GLPGS----EALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLA 244

Query: 386 RYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHK 445
            +  V   L+S YSKCG++D A  +F+ M    D+V++N +I GY VNG  E+++ L+ +
Sbjct: 245 EHEHVVTGLMSLYSKCGDMDSAQFLFDRMDN-PDLVAYNALISGYSVNGMVESSVELFKE 303

Query: 446 MTETGEVPDSSTYLSIL---NACGHAGLTN--DGLVIFNQMIEENKVKPSQEHYGCVVDL 500
           +T +G  P+SST ++++   +  GH  L       V+  ++  +  V  +     C ++ 
Sbjct: 304 LTASGWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLND 363

Query: 501 LARAGCLSDASGLAGKLLEGMGPNIWRALLSG 532
           +  A  + DA  +  K +E      W A++SG
Sbjct: 364 MESARSIFDA--MLEKTMES-----WNAMISG 388



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 18/148 (12%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y  + L+  Y K G I EA ++FD +  KNVVSW+ +I GY ++G   +++K +  M+ +
Sbjct: 450 YVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISGYGLHGQGAEALKLYKDMLDA 509

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVS-----CNA 120
            +LP S T + V+ A +           HG +V  G    +F  + N Y ++     C  
Sbjct: 510 RILPTSSTFLSVIYACS-----------HGGLVDEG--QKVFRVMTNEYRITPGIEHCTC 556

Query: 121 IVAGFINNKLFQQAVLLFNFFRGSGLVP 148
           +V          +A+ L + F  S + P
Sbjct: 557 MVDLLGRAGKLNEALELISEFPQSAIGP 584


>gi|449441542|ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 652

 Score =  233 bits (595), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 155/542 (28%), Positives = 258/542 (47%), Gaps = 57/542 (10%)

Query: 57  KAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLV 116
           K  + ++  G   N +    V+ +  GL+ +  AR              LF+   +P + 
Sbjct: 85  KVQAQIITHGFQYNGYVAPNVVTSWVGLKQMAHARH-------------LFDHFPDPKVE 131

Query: 117 SCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLT 176
             NAI  G+ +N  +++ V LF   +   + PN  T   V++ C  +G+    E IH   
Sbjct: 132 LWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEGEEIHCEV 191

Query: 177 IKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDAL 236
           IK GL  +  V  +++D+YS    + +A ++F  M  +++++WT M+  ++       A 
Sbjct: 192 IKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYILCNRVALAR 251

Query: 237 KIFREMRKSRIICDTVALLNLISVNAI-LGDLKRGKQLHAQVVLGGLQSELRLSNSIIAM 295
           ++F ++   R     V L N++    I +GD+K  ++L   +      S     N+++  
Sbjct: 252 RLF-DLAPER----DVVLWNIMVSGYIEIGDMKAARKLFDTMPYRDTMS----WNTMLNG 302

Query: 296 YSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSIT 355
           Y+  GD+++   +F ++ E+++ SW  +I GY  NGC  E L  F +M  +     +  T
Sbjct: 303 YANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDAT 362

Query: 356 LVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMG 415
           LV++L+A   L AL++   +H  A   GF     V N LI  YSKCG ++ A  VFE M 
Sbjct: 363 LVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFESMD 422

Query: 416 FLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGL 475
            L+D+++WN++I G   +G G  AL L+H+M   GE PD  T++ +L +C H GL  +G 
Sbjct: 423 -LKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEGT 481

Query: 476 VIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVL 535
             FN M+ E  + P  EHYGC+VDL  RAG L  A     ++       IW ALL  C +
Sbjct: 482 SYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALLGACRI 541

Query: 536 H---------------------------------VGRFQDAEALRSGSQKKGIIKIPGIS 562
           +                                 +GR++D   L+   +  G  K+PG S
Sbjct: 542 YKNIDLAELALQKLIVLEPKNPANYVLLSNIYGDLGRWKDVARLKILMRDTGSKKLPGCS 601

Query: 563 FL 564
            +
Sbjct: 602 LI 603



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 106/449 (23%), Positives = 200/449 (44%), Gaps = 39/449 (8%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y +  +++++    ++  A +LFD  P+  V  W+ +  GY  N F+ + +  F  M   
Sbjct: 100 YVAPNVVTSWVGLKQMAHARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSM 159

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-------------------- 105
            + PN FT   VL + A +        IH  ++K GLE +                    
Sbjct: 160 DVRPNCFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSA 219

Query: 106 --LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTML--TVIRGCV 161
             LF G+    +V+  ++++G+I       A  LF+      L P    +L   ++ G +
Sbjct: 220 YKLFVGMLERNIVAWTSMISGYILCNRVALARRLFD------LAPERDVVLWNIMVSGYI 273

Query: 162 ALGS-RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
            +G  +A  +L   +  +     D    N++L+ Y+   D++A  Q+F EM  ++V SW 
Sbjct: 274 EIGDMKAARKLFDTMPYR-----DTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWN 328

Query: 221 RMMGLFVDFEYAGDALKIFREMR-KSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
            ++G +       + L+ F+ M     ++ +   L+ ++S  A LG L  GK +H     
Sbjct: 329 GLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAAT 388

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G +  + + N++I MYSKCG ++++  VF  +  K L++W ++I G   +GC  +AL  
Sbjct: 389 IGFKGSIYVGNALIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGLATHGCGADALTL 448

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQ-LHGIAFEAGFPRYRSVQNCLISSY 398
           F +M+    +  D IT + +L +   L  +E      + +  E           C++  +
Sbjct: 449 FHQMKI-NGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLF 507

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
            + G +D A    + M    D V W  ++
Sbjct: 508 GRAGLLDRAIEFVKRMPMEADAVIWAALL 536



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 145/310 (46%), Gaps = 53/310 (17%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  D  + + +L+ Y  +G ++  E LF+E+PE+NV SW+ +I GY+ NG   + ++ F 
Sbjct: 289 PYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFK 348

Query: 61  HMMLSGL-LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES--------------- 104
            M++ GL +PN  T+V VL A A L  L+L + +H      G +                
Sbjct: 349 RMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSKC 408

Query: 105 -------DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
                  ++FE +    L++ N+++ G   +     A+ LF+  + +G  P+ +T + V+
Sbjct: 409 GLIENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIGVL 468

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMD-------LDAAIQIFRE 210
             C  LG   L E   G +    ++ + S+   + + Y C++D       LD AI+  + 
Sbjct: 469 CSCTHLG---LVE--EGTSYFNSMVNEYSIAPQI-EHYGCMVDLFGRAGLLDRAIEFVKR 522

Query: 211 MECK-DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALL------NLISVNAI 263
           M  + D + W  ++G          A +I++ +  + +    + +L      N + ++ I
Sbjct: 523 MPMEADAVIWAALLG----------ACRIYKNIDLAELALQKLIVLEPKNPANYVLLSNI 572

Query: 264 LGDLKRGKQL 273
            GDL R K +
Sbjct: 573 YGDLGRWKDV 582



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 150/322 (46%), Gaps = 14/322 (4%)

Query: 154 LTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC 213
           ++++R C  +   AL + +    I  G   +  V  +V+  +  L  +  A  +F     
Sbjct: 71  ISLLRSCKTV---ALLQKVQAQIITHGFQYNGYVAPNVVTSWVGLKQMAHARHLFDHFPD 127

Query: 214 KDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQL 273
             V  W  +   +    +  + + +F +M+   +  +      ++   A +G    G+++
Sbjct: 128 PKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEGEEI 187

Query: 274 HAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA 333
           H +V+ GGL+    ++ ++I +YS    + S+  +F  + E+++V+WT++ISGY+   C 
Sbjct: 188 HCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYIL--CN 245

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC 393
           R AL + +     + D V    +VS     G++ A           F+    R     N 
Sbjct: 246 RVALARRLFDLAPERDVVLWNIMVSGYIEIGDMKAARKL-------FDTMPYRDTMSWNT 298

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG-EV 452
           +++ Y+  G+V+    +FEEM   R+V SWN +I GY  NG     L  + +M   G  V
Sbjct: 299 MLNGYANNGDVEACEQLFEEMP-ERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVV 357

Query: 453 PDSSTYLSILNACGHAGLTNDG 474
           P+ +T +++L+AC   G  + G
Sbjct: 358 PNDATLVTVLSACARLGALDLG 379


>gi|297817672|ref|XP_002876719.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322557|gb|EFH52978.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1005

 Score =  233 bits (595), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 167/615 (27%), Positives = 302/615 (49%), Gaps = 69/615 (11%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEK-NVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLP 69
           L+S Y K+  +  A+ LFD   EK + V W+ ++  YS +G   ++++ F  M ++G   
Sbjct: 203 LVSMYAKTDHLSAAKRLFDASQEKGDAVLWNSILSSYSTSGKSLETLQLFREMQMTGPAS 262

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVK----------------FGLESDLFEG---- 109
           NS+T+V  L A  G    +L + IH  ++K                +     + E     
Sbjct: 263 NSYTIVSALTACEGFSYAKLGKEIHAAVLKSTHSFEVYVCNALIAMYARCGKMLEAGRIL 322

Query: 110 --LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRA 167
             + N  +V+ N+++ G++ N ++++A+  F     +G  P+ V++ +VI     L +  
Sbjct: 323 RLMNNADVVTWNSLIKGYVQNLMYKEALQFFCDMIAAGHKPDEVSLTSVIAASGRLSNLL 382

Query: 168 LCELIHGLTIKLGLILDVSVNNSVLDMYS-----CLMDLDAAIQIFREMECKDVISWTRM 222
               +H   IK G   ++ V N+++DMYS     C M      + F  M  KD+ISWT +
Sbjct: 383 AGMELHAYVIKHGWDSNLLVGNTLIDMYSKCNLTCYMG-----RAFLMMHEKDLISWTTI 437

Query: 223 MGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL 282
           +  +   +   +AL++FR++ K R+  D + L +++   ++L  +   K++H  ++  GL
Sbjct: 438 IAGYALNDCHVEALQLFRDVAKKRMEIDEMMLGSILRACSVLKSMLIVKEIHCHILRKGL 497

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
              + + N ++ +Y KC ++  +  VF  I  K +VSWT++IS    NG   EA+  F +
Sbjct: 498 IDTV-IQNELVDVYGKCRNMGYASRVFESIKGKDVVSWTSMISSSALNGNENEAVELFRR 556

Query: 343 MRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
           M  E     DS+ L+ IL+A+  L+AL+   ++HG     GF    S+   ++  Y+ CG
Sbjct: 557 M-AETGLLADSVALLCILSAAASLSALKKGREIHGYLLRKGFCLEGSIAVAVVDMYACCG 615

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
           ++  A  VF+ +   + ++ + ++I  YG++G G+ ++ L++KM      PD  ++L++L
Sbjct: 616 DLQSAKAVFDRIE-RKGLLQYTSMINAYGMHGCGKASVELFNKMRHENVSPDHISFLALL 674

Query: 463 NACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMG 522
            AC HAGL ++G      M  E K++P  EHY C+VD+L RA C+ +A      +     
Sbjct: 675 YACSHAGLLDEGRRFLKIMELEYKLEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPT 734

Query: 523 PNIWRALLSGCVLHV---------------------------------GRFQDAEALRSG 549
             +W ALL+ C  H                                  GR+ D E +R+ 
Sbjct: 735 TEVWCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAK 794

Query: 550 SQKKGIIKIPGISFL 564
            +  G+ K PG S++
Sbjct: 795 MKASGMEKHPGCSWI 809



 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 128/460 (27%), Positives = 222/460 (48%), Gaps = 26/460 (5%)

Query: 25  ENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGL 84
           E +FDE+ ++   +W+ +I  Y  NG    ++  + +M + G+  + ++   +L A   L
Sbjct: 116 EKVFDEMRDRTAFAWNALIGAYVSNGEPASALFIYRNMRVEGVPLDLYSFPVLLKACGKL 175

Query: 85  QNLELARSIHGLMVKFGLES---------------DLFEGLKNPYLVS--------CNAI 121
           +++     +H ++VK G  S               D     K  +  S         N+I
Sbjct: 176 RDIRSGTELHCMLVKLGFNSTGFIVNALVSMYAKTDHLSAAKRLFDASQEKGDAVLWNSI 235

Query: 122 VAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGL 181
           ++ +  +    + + LF   + +G   N+ T+++ +  C       L + IH   +K   
Sbjct: 236 LSSYSTSGKSLETLQLFREMQMTGPASNSYTIVSALTACEGFSYAKLGKEIHAAVLKSTH 295

Query: 182 ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFRE 241
             +V V N+++ MY+    +  A +I R M   DV++W  ++  +V      +AL+ F +
Sbjct: 296 SFEVYVCNALIAMYARCGKMLEAGRILRLMNNADVVTWNSLIKGYVQNLMYKEALQFFCD 355

Query: 242 MRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGD 301
           M  +    D V+L ++I+ +  L +L  G +LHA V+  G  S L + N++I MYSKC  
Sbjct: 356 MIAAGHKPDEVSLTSVIAASGRLSNLLAGMELHAYVIKHGWDSNLLVGNTLIDMYSKCNL 415

Query: 302 LDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILT 361
                  F  + EK L+SWT II+GY  N C  EAL  F  + +++ + +D + L SIL 
Sbjct: 416 TCYMGRAFLMMHEKDLISWTTIIAGYALNDCHVEALQLFRDVAKKRME-IDEMMLGSILR 474

Query: 362 ASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVV 421
           A   L ++ I  ++H      G      +QN L+  Y KC N+  A  VFE +   +DVV
Sbjct: 475 ACSVLKSMLIVKEIHCHILRKGLID-TVIQNELVDVYGKCRNMGYASRVFESIKG-KDVV 532

Query: 422 SWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           SW ++I    +NG+   A+ L+ +M ETG + DS   L I
Sbjct: 533 SWTSMISSSALNGNENEAVELFRRMAETGLLADSVALLCI 572



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 106/387 (27%), Positives = 206/387 (53%), Gaps = 24/387 (6%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y  + L++ Y + GK+ EA  +   +   +VV+W+ +I GY  N  ++++++ F  M+ +
Sbjct: 300 YVCNALIAMYARCGKMLEAGRILRLMNNADVVTWNSLIKGYVQNLMYKEALQFFCDMIAA 359

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG---------------- 109
           G  P+  ++  V+ A+  L NL     +H  ++K G +S+L  G                
Sbjct: 360 GHKPDEVSLTSVIAASGRLSNLLAGMELHAYVIKHGWDSNLLVGNTLIDMYSKCNLTCYM 419

Query: 110 ------LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
                 +    L+S   I+AG+  N    +A+ LF       +  + + + +++R C  L
Sbjct: 420 GRAFLMMHEKDLISWTTIIAGYALNDCHVEALQLFRDVAKKRMEIDEMMLGSILRACSVL 479

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
            S  + + IH   ++ GLI D  + N ++D+Y    ++  A ++F  ++ KDV+SWT M+
Sbjct: 480 KSMLIVKEIHCHILRKGLI-DTVIQNELVDVYGKCRNMGYASRVFESIKGKDVVSWTSMI 538

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
                     +A+++FR M ++ ++ D+VALL ++S  A L  LK+G+++H  ++  G  
Sbjct: 539 SSSALNGNENEAVELFRRMAETGLLADSVALLCILSAAASLSALKKGREIHGYLLRKGFC 598

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
            E  ++ +++ MY+ CGDL S+++VF++I  K L+ +T++I+ Y  +GC + ++  F KM
Sbjct: 599 LEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKASVELFNKM 658

Query: 344 RQEKTDSVDSITLVSILTASGELAALE 370
           R E   S D I+ +++L A      L+
Sbjct: 659 RHENV-SPDHISFLALLYACSHAGLLD 684



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 94/367 (25%), Positives = 181/367 (49%), Gaps = 9/367 (2%)

Query: 103 ESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA 162
           +  +F+ +++    + NA++  +++N     A+ ++   R  G+  +  +   +++ C  
Sbjct: 115 QEKVFDEMRDRTAFAWNALIGAYVSNGEPASALFIYRNMRVEGVPLDLYSFPVLLKACGK 174

Query: 163 LGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK-DVISWTR 221
           L        +H + +KLG      + N+++ MY+    L AA ++F   + K D + W  
Sbjct: 175 LRDIRSGTELHCMLVKLGFNSTGFIVNALVSMYAKTDHLSAAKRLFDASQEKGDAVLWNS 234

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++  +     + + L++FREM+ +    ++  +++ ++        K GK++HA V+   
Sbjct: 235 ILSSYSTSGKSLETLQLFREMQMTGPASNSYTIVSALTACEGFSYAKLGKEIHAAVLKST 294

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
              E+ + N++IAMY++CG +  +  +   +    +V+W ++I GYVQN   +EAL  F 
Sbjct: 295 HSFEVYVCNALIAMYARCGKMLEAGRILRLMNNADVVTWNSLIKGYVQNLMYKEALQFFC 354

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
            M        D ++L S++ ASG L+ L   ++LH    + G+     V N LI  YSKC
Sbjct: 355 DM-IAAGHKPDEVSLTSVIAASGRLSNLLAGMELHAYVIKHGWDSNLLVGNTLIDMYSKC 413

Query: 402 G---NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
                +  A+++  E    +D++SW TII GY +N     AL L+  + +     D    
Sbjct: 414 NLTCYMGRAFLMMHE----KDLISWTTIIAGYALNDCHVEALQLFRDVAKKRMEIDEMML 469

Query: 459 LSILNAC 465
            SIL AC
Sbjct: 470 GSILRAC 476



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 146/291 (50%), Gaps = 9/291 (3%)

Query: 183 LDVSVNNSVLDMYSCLMDLD------AAIQIFREMECKDVISWTRMMGLFVDFEYAGDAL 236
           LDV+ NNS ++ Y+ L++L       +  ++F EM  +   +W  ++G +V       AL
Sbjct: 88  LDVNGNNSPIEAYAYLLELCGKSRALSQEKVFDEMRDRTAFAWNALIGAYVSNGEPASAL 147

Query: 237 KIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMY 296
            I+R MR   +  D  +   L+     L D++ G +LH  +V  G  S   + N++++MY
Sbjct: 148 FIYRNMRVEGVPLDLYSFPVLLKACGKLRDIRSGTELHCMLVKLGFNSTGFIVNALVSMY 207

Query: 297 SKCGDLDSSRSVFNQITEK-SLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSIT 355
           +K   L +++ +F+   EK   V W +I+S Y  +G + E L  F +M Q    + +S T
Sbjct: 208 AKTDHLSAAKRLFDASQEKGDAVLWNSILSSYSTSGKSLETLQLFREM-QMTGPASNSYT 266

Query: 356 LVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMG 415
           +VS LTA    +  ++  ++H    ++       V N LI+ Y++CG +  A  +   M 
Sbjct: 267 IVSALTACEGFSYAKLGKEIHAAVLKSTHSFEVYVCNALIAMYARCGKMLEAGRILRLMN 326

Query: 416 FLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
              DVV+WN++I GY  N   + AL  +  M   G  PD  +  S++ A G
Sbjct: 327 NA-DVVTWNSLIKGYVQNLMYKEALQFFCDMIAAGHKPDEVSLTSVIAASG 376



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 108/233 (46%), Gaps = 7/233 (3%)

Query: 304 SSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTAS 363
           S   VF+++ +++  +W A+I  YV NG    AL  +  MR E    +D  +   +L A 
Sbjct: 114 SQEKVFDEMRDRTAFAWNALIGAYVSNGEPASALFIYRNMRVEGV-PLDLYSFPVLLKAC 172

Query: 364 GELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSW 423
           G+L  +    +LH +  + GF     + N L+S Y+K  ++  A  +F+      D V W
Sbjct: 173 GKLRDIRSGTELHCMLVKLGFNSTGFIVNALVSMYAKTDHLSAAKRLFDASQEKGDAVLW 232

Query: 424 NTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIE 483
           N+I+  Y  +G     L L+ +M  TG   +S T +S L AC        G  I   ++ 
Sbjct: 233 NSILSSYSTSGKSLETLQLFREMQMTGPASNSYTIVSALTACEGFSYAKLGKEIHAAVL- 291

Query: 484 ENKVKPSQEHYGC--VVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCV 534
             K   S E Y C  ++ + AR G + +A G   +L+       W +L+ G V
Sbjct: 292 --KSTHSFEVYVCNALIAMYARCGKMLEA-GRILRLMNNADVVTWNSLIKGYV 341



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 88/184 (47%), Gaps = 22/184 (11%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           ID    ++L+  Y K   +  A  +F+ I  K+VVSW+ +I   ++NG   ++++ F  M
Sbjct: 498 IDTVIQNELVDVYGKCRNMGYASRVFESIKGKDVVSWTSMISSSALNGNENEAVELFRRM 557

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK--FGLESDL-------------- 106
             +GLL +S  ++ +L AAA L  L+  R IHG +++  F LE  +              
Sbjct: 558 AETGLLADSVALLCILSAAASLSALKKGREIHGYLLRKGFCLEGSIAVAVVDMYACCGDL 617

Query: 107 ------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                 F+ ++   L+   +++  +  +   + +V LFN  R   + P+ ++ L ++  C
Sbjct: 618 QSAKAVFDRIERKGLLQYTSMINAYGMHGCGKASVELFNKMRHENVSPDHISFLALLYAC 677

Query: 161 VALG 164
              G
Sbjct: 678 SHAG 681


>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  233 bits (595), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 154/508 (30%), Positives = 255/508 (50%), Gaps = 42/508 (8%)

Query: 100 FGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFF---RGSGLVPNAVTMLTV 156
           F   S  F  + +P   S N ++ G   +  + ++ L   F+   +  GL PN +T   +
Sbjct: 76  FAYASVFFSNILDPTEYSFNVMIRGL--STAWNKSSLALEFYSRMKFLGLKPNNLTYPFL 133

Query: 157 IRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
              C  L +     + H   I+ GL  D  V++S++ MY+    +  A ++F E+  KD+
Sbjct: 134 FIACSNLLAVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDL 193

Query: 217 ISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQ 276
           +SW  M+  +    +AG+A+ +FREM ++    + ++L++++     LGDLK G  +   
Sbjct: 194 VSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEF 253

Query: 277 VVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
           VV   +     + +++I MY KCGDL S+R +F+ + +K  V+W A+I+GY QNG + EA
Sbjct: 254 VVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEA 313

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
           +  F  MR   T + D ITL+ IL+A   + AL++  Q+   A E GF     V   L+ 
Sbjct: 314 IKLFQDMRMSST-APDQITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVD 372

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV--PD 454
            Y+KCG++D A+ VF  M   ++ VSWN +I     +G  + ALAL+  M   G    P+
Sbjct: 373 MYAKCGSLDNAFRVFYGMP-KKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPN 431

Query: 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLA 514
             T++ +L+AC HAGL ++G  +F+ M     + P  EHY C+VDL +RAG L +A    
Sbjct: 432 DITFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFV 491

Query: 515 GKLLEGMGPNIWRALLSGC---------------------------------VLHVGRFQ 541
             + E     I  ALL  C                                   ++ R+ 
Sbjct: 492 MTMPEKPDEVILGALLGACQKRKNIDISERVMKLLLELEPSNSGNYVISSKLYANLRRWD 551

Query: 542 DAEALRSGSQKKGIIKIPGISFLNSTSR 569
           D+  +R   ++KG+ K PG S+++  S+
Sbjct: 552 DSARMRMLMKQKGVSKTPGCSWIDINSQ 579



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 109/411 (26%), Positives = 207/411 (50%), Gaps = 27/411 (6%)

Query: 24  AENLFDEIPEKNVVSWSIVIHGYSINGFHEKSM--KAFSHMMLSGLLPNSFTMVGVLVAA 81
           A   F  I +    S++++I G S   +++ S+  + +S M   GL PN+ T   + +A 
Sbjct: 79  ASVFFSNILDPTEYSFNVMIRGLS-TAWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIAC 137

Query: 82  AGLQNLELARSIHGLMVKFGLESD----------------------LFEGLKNPYLVSCN 119
           + L  +E  R  H  +++ GL+ D                      +F+ +    LVS N
Sbjct: 138 SNLLAVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWN 197

Query: 120 AIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKL 179
           ++++G+   +   +AV LF     +G  PN +++++V+  C  LG   L   +    ++ 
Sbjct: 198 SMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVEN 257

Query: 180 GLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIF 239
            + L+  + ++++ MY    DL +A +IF  M+ KD ++W  M+  +     + +A+K+F
Sbjct: 258 KMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLF 317

Query: 240 REMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKC 299
           ++MR S    D + L+ ++S  A +G L  GKQ+       G Q ++ +  +++ MY+KC
Sbjct: 318 QDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKC 377

Query: 300 GDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE-KTDSVDSITLVS 358
           G LD++  VF  + +K+ VSW A+IS    +G A+EAL  F  M  E  T S + IT V 
Sbjct: 378 GSLDNAFRVFYGMPKKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVG 437

Query: 359 ILTASGELAALEICLQL-HGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
           +L+A      ++   +L H ++   G        +C++  +S+ G+++ A+
Sbjct: 438 VLSACVHAGLVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAW 488



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 170/357 (47%), Gaps = 29/357 (8%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + S  L++ Y + GK+ +A  +FDEI +K++VSW+ +I GYS      +++  F  MM
Sbjct: 161 DGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMM 220

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK----------------FGLESDL- 106
            +G  PN  ++V VL A   L +L+L   +   +V+                +G   DL 
Sbjct: 221 EAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLV 280

Query: 107 -----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                F+ +K    V+ NA++ G+  N + ++A+ LF   R S   P+ +T++ ++  C 
Sbjct: 281 SARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACA 340

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
           ++G+  L + +     + G   DV V  +++DMY+    LD A ++F  M  K+ +SW  
Sbjct: 341 SIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPKKNEVSWNA 400

Query: 222 MMGLFVDFEYAGDALKIFREMRKS--RIICDTVALLNLISVNAILGDLKRGKQL-HAQVV 278
           M+        A +AL +F+ M      +  + +  + ++S     G +  G++L H    
Sbjct: 401 MISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHMMSS 460

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
             GL  ++   + ++ ++S+ G L+ +      + EK       +I G +   C + 
Sbjct: 461 SFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEKP----DEVILGALLGACQKR 513


>gi|356540705|ref|XP_003538826.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g50420-like [Glycine max]
          Length = 715

 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 160/576 (27%), Positives = 286/576 (49%), Gaps = 40/576 (6%)

Query: 5   PYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHE--KSMKAFSHM 62
           P+  + +LS Y + G + ++  +FD++P + +VS++ ++  YS    +    +++ ++ M
Sbjct: 48  PFVYNNILSMYARCGSLTDSHLVFDKMPRRTIVSYNALLAAYSRASPNHAISALELYTQM 107

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES---------------DL- 106
           + +GL P+S T   +L A++ L++     S+H    K GL                 DL 
Sbjct: 108 VTNGLRPSSTTFTSLLQASSLLEHWWFGSSLHAKGFKLGLNDICLQTSLLNMYSNCGDLS 167

Query: 107 -----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                F  + +   V+ N+++ G++ N   ++ + LF      G  P   T   V+  C 
Sbjct: 168 SAELVFWDMVDRDHVAWNSLIMGYLKNNKIEEGIWLFIKMMSVGFAPTQFTYCMVLNSCS 227

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            L       LIH   I   + LD+ + N+++DMY    ++  A +IF  ME  D++SW  
Sbjct: 228 RLKDYRSGRLIHAHVIVRNVSLDLHLQNALVDMYCNAGNMQTAYRIFSRMENPDLVSWNS 287

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIIC----DTVALLNLISVNAILGDLKRGKQLHAQV 277
           M+  + + E    A+ +F ++++   +C    D      +IS   +      GK LHA+V
Sbjct: 288 MIAGYSENEDGEKAMNLFVQLQE---MCFPKPDDYTYAGIISATGVFPSSSYGKSLHAEV 344

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           +  G +  + + +++++MY K  + D++  VF  I+ K +V WT +I+GY +      A+
Sbjct: 345 IKTGFERSVFVGSTLVSMYFKNHESDAAWRVFCSISVKDVVLWTEMITGYSKMTDGICAI 404

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
             F +M  E  + VD   L  ++ A   LA L     +H  A + G+    SV   LI  
Sbjct: 405 RCFFQMVHEGHE-VDDYVLSGVVNACANLAVLRQGEIIHCYAVKLGYDVEMSVSGSLIDM 463

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           Y+K G+++ AY+VF ++    D+  WN+++ GY  +G  E AL ++ ++ + G +PD  T
Sbjct: 464 YAKNGSLEAAYLVFSQVS-EPDLKCWNSMLGGYSHHGMVEEALQVFEEILKQGLIPDQVT 522

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK- 516
           +LS+L+AC H+ L   G  ++N M     + P  +HY C+V L +RA  L +A  +  K 
Sbjct: 523 FLSLLSACSHSRLVEQGKFLWNYMNSIGLI-PGLKHYSCMVTLFSRAALLEEAEEIINKS 581

Query: 517 -LLEGMGPNIWRALLSGCVLH----VGRFQDAEALR 547
             +E     +WR LLS CV++    VG     E LR
Sbjct: 582 PYIED-NLELWRTLLSACVINKNFKVGIHAAEEVLR 616



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 116/473 (24%), Positives = 230/473 (48%), Gaps = 19/473 (4%)

Query: 106 LFEGLKNPYLVSCNAIVAGF----INNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
           +F+ +    +VS NA++A +     N+ +   A+ L+     +GL P++ T  ++++   
Sbjct: 70  VFDKMPRRTIVSYNALLAAYSRASPNHAI--SALELYTQMVTNGLRPSSTTFTSLLQASS 127

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            L        +H    KLGL  D+ +  S+L+MYS   DL +A  +F +M  +D ++W  
Sbjct: 128 LLEHWWFGSSLHAKGFKLGLN-DICLQTSLLNMYSNCGDLSSAELVFWDMVDRDHVAWNS 186

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++  ++      + + +F +M              +++  + L D + G+ +HA V++  
Sbjct: 187 LIMGYLKNNKIEEGIWLFIKMMSVGFAPTQFTYCMVLNSCSRLKDYRSGRLIHAHVIVRN 246

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           +  +L L N+++ MY   G++ ++  +F+++    LVSW ++I+GY +N    +A+N F+
Sbjct: 247 VSLDLHLQNALVDMYCNAGNMQTAYRIFSRMENPDLVSWNSMIAGYSENEDGEKAMNLFV 306

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           ++++      D  T   I++A+G   +      LH    + GF R   V + L+S Y K 
Sbjct: 307 QLQEMCFPKPDDYTYAGIISATGVFPSSSYGKSLHAEVIKTGFERSVFVGSTLVSMYFKN 366

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
              D A+ VF  +  ++DVV W  +I GY     G  A+  + +M   G   D      +
Sbjct: 367 HESDAAWRVFCSIS-VKDVVLWTEMITGYSKMTDGICAIRCFFQMVHEGHEVDDYVLSGV 425

Query: 462 LNACGHAGLTNDGLVIFNQMIEEN-KVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           +NAC +  +   G +I    ++    V+ S    G ++D+ A+ G L  A  +  ++ E 
Sbjct: 426 VNACANLAVLRQGEIIHCYAVKLGYDVEMSVS--GSLIDMYAKNGSLEAAYLVFSQVSE- 482

Query: 521 MGPNI--WRALLSGCVLHVGRFQDAEALRSGSQKKGII--KIPGISFLNSTSR 569
             P++  W ++L G   H G  ++A  +     K+G+I  ++  +S L++ S 
Sbjct: 483 --PDLKCWNSMLGG-YSHHGMVEEALQVFEEILKQGLIPDQVTFLSLLSACSH 532



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 92/388 (23%), Positives = 181/388 (46%), Gaps = 25/388 (6%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  + L+  Y  +G ++ A  +F  +   ++VSW+ +I GYS N   EK+M  F  +
Sbjct: 249 LDLHLQNALVDMYCNAGNMQTAYRIFSRMENPDLVSWNSMIAGYSENEDGEKAMNLFVQL 308

Query: 63  M-LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG-------LKN-- 112
             +    P+ +T  G++ A     +    +S+H  ++K G E  +F G        KN  
Sbjct: 309 QEMCFPKPDDYTYAGIISATGVFPSSSYGKSLHAEVIKTGFERSVFVGSTLVSMYFKNHE 368

Query: 113 ---PYLVSCNAIVAGFI--------NNKLFQQAVLLFNFFR--GSGLVPNAVTMLTVIRG 159
               + V C+  V   +         +K+      +  FF+    G   +   +  V+  
Sbjct: 369 SDAAWRVFCSISVKDVVLWTEMITGYSKMTDGICAIRCFFQMVHEGHEVDDYVLSGVVNA 428

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C  L      E+IH   +KLG  +++SV+ S++DMY+    L+AA  +F ++   D+  W
Sbjct: 429 CANLAVLRQGEIIHCYAVKLGYDVEMSVSGSLIDMYAKNGSLEAAYLVFSQVSEPDLKCW 488

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
             M+G +       +AL++F E+ K  +I D V  L+L+S  +    +++GK L   +  
Sbjct: 489 NSMLGGYSHHGMVEEALQVFEEILKQGLIPDQVTFLSLLSACSHSRLVEQGKFLWNYMNS 548

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQ--ITEKSLVSWTAIISGYVQNGCAREAL 337
            GL   L+  + ++ ++S+   L+ +  + N+    E +L  W  ++S  V N   +  +
Sbjct: 549 IGLIPGLKHYSCMVTLFSRAALLEEAEEIINKSPYIEDNLELWRTLLSACVINKNFKVGI 608

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGE 365
           +   ++ + K +   ++ L+S L A+  
Sbjct: 609 HAAEEVLRLKAEDGPTLVLLSNLYAAAR 636


>gi|357136755|ref|XP_003569969.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Brachypodium distachyon]
          Length = 805

 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 158/618 (25%), Positives = 281/618 (45%), Gaps = 100/618 (16%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           LL  Y K G +++A  LFD +   N VS++ ++ G    G  + +++ F+ M  SG+  +
Sbjct: 181 LLGMYTKCGGVEDAVRLFDGMASPNEVSFTAMMGGLVQAGSVDDALRLFARMCRSGVRVD 240

Query: 71  SFTMVGVLVAAAG--------LQNLELARSIHGLMVKFGLESD----------------- 105
              +  VL + A         ++   L + IH L+V+ G  SD                 
Sbjct: 241 PVAVSSVLGSCAQACASEFDVVRAFRLGQCIHALIVRKGFGSDQHVGNSLIDMYTKCMQM 300

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +F+ L N   VS N ++ GF     + +A+ + N    SG  PN VT   ++  C
Sbjct: 301 DEAVKVFDSLPNISTVSWNILITGFGQAGSYAKALEVLNLMEESGSEPNEVTYSNMLASC 360

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
           +                                      D+ +A  +F ++    V +W 
Sbjct: 361 IKA-----------------------------------RDVLSARAMFDKISRPSVTTWN 385

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++  +   E   D +++FR M+   +  D   L  ++S  + LG L  G Q+H+  V  
Sbjct: 386 TLLSGYCQEELHQDTVELFRRMQHQNVQPDRTTLAVILSSCSRLGILDLGTQVHSASVRF 445

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
            L +++ +++ ++ MYSKCG +  +R +FN++TE+ +V W ++ISG   +    EA + F
Sbjct: 446 LLHNDMFVASGLVDMYSKCGQIGIARIIFNRMTERDVVCWNSMISGLAIHSLNEEAFDFF 505

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            +MR       +S +  S++ +   L+++    Q+H    + G+ +   V + LI  Y+K
Sbjct: 506 KQMRGNGMMPTES-SYASMINSCARLSSVPQGRQIHAQIVKDGYDQNVYVGSALIDMYAK 564

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CGN+D A + F+ M   +++V+WN +I+GY  NG GE A+ L+  M  T + PD  T+++
Sbjct: 565 CGNMDDARVFFDCM-VTKNIVAWNEMIHGYAQNGFGEKAVDLFEYMLTTEQRPDGVTFIA 623

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           +L  C H+GL ++ +  FN M     + P  EHY C++D L RAG L +   L   +   
Sbjct: 624 VLTGCSHSGLVDEAIAFFNSMESTYGITPLAEHYTCLIDGLGRAGRLVEVEALIDNMPCK 683

Query: 521 MGPNIWRALLSGCVLH---------------------------------VGRFQDAEALR 547
             P +W  LL+ C +H                                 +GR  DA  +R
Sbjct: 684 DDPIVWEVLLAACAVHHNAELGECAAKHLFRLDPKNPSPYVLLSNIYASLGRHGDASGVR 743

Query: 548 SGSQKKGIIKIPGISFLN 565
           +    +G++K  G S+++
Sbjct: 744 ALMSSRGVVKGRGYSWID 761



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 106/435 (24%), Positives = 208/435 (47%), Gaps = 15/435 (3%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L+  Y K  ++ EA  +FD +P  + VSW+I+I G+   G + K+++  + M 
Sbjct: 283 DQHVGNSLIDMYTKCMQMDEAVKVFDSLPNISTVSWNILITGFGQAGSYAKALEVLNLME 342

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVA 123
            SG  PN  T   +L +    +++  AR+             +F+ +  P + + N +++
Sbjct: 343 ESGSEPNEVTYSNMLASCIKARDVLSARA-------------MFDKISRPSVTTWNTLLS 389

Query: 124 GFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLIL 183
           G+   +L Q  V LF   +   + P+  T+  ++  C  LG   L   +H  +++  L  
Sbjct: 390 GYCQEELHQDTVELFRRMQHQNVQPDRTTLAVILSSCSRLGILDLGTQVHSASVRFLLHN 449

Query: 184 DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMR 243
           D+ V + ++DMYS    +  A  IF  M  +DV+ W  M+          +A   F++MR
Sbjct: 450 DMFVASGLVDMYSKCGQIGIARIIFNRMTERDVVCWNSMISGLAIHSLNEEAFDFFKQMR 509

Query: 244 KSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLD 303
            + ++    +  ++I+  A L  + +G+Q+HAQ+V  G    + + +++I MY+KCG++D
Sbjct: 510 GNGMMPTESSYASMINSCARLSSVPQGRQIHAQIVKDGYDQNVYVGSALIDMYAKCGNMD 569

Query: 304 SSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTAS 363
            +R  F+ +  K++V+W  +I GY QNG   +A++ F  M   +    D +T +++LT  
Sbjct: 570 DARVFFDCMVTKNIVAWNEMIHGYAQNGFGEKAVDLFEYMLTTEQRP-DGVTFIAVLTGC 628

Query: 364 GELAALEICLQ-LHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVS 422
                ++  +   + +    G         CLI    + G +     + + M    D + 
Sbjct: 629 SHSGLVDEAIAFFNSMESTYGITPLAEHYTCLIDGLGRAGRLVEVEALIDNMPCKDDPIV 688

Query: 423 WNTIIYGYGVNGHGE 437
           W  ++    V+ + E
Sbjct: 689 WEVLLAACAVHHNAE 703



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 136/540 (25%), Positives = 237/540 (43%), Gaps = 96/540 (17%)

Query: 46  YSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD 105
           YS++G    +++AF  +      PN+++    L AA    +L+ AR+             
Sbjct: 53  YSVSGLPCDALRAFRSLPR----PNAYSYNAALSAARRAGDLDAARA------------- 95

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           L + + +  +VS N ++A    ++   +A+ L+      GLVP   T+ +V+  C A+ +
Sbjct: 96  LLDEMPDRNVVSWNTVIAALARSERAGEALELYEGMLREGLVPTHFTLASVLSACGAVAA 155

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
                  HGL +K+GL  ++ V N++L MY+    ++ A+++F  M   + +S+T MMG 
Sbjct: 156 LDDGRRCHGLAVKVGLDENLFVENALLGMYTKCGGVEDAVRLFDGMASPNEVSFTAMMGG 215

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNA--------ILGDLKRGKQLHAQV 277
            V      DAL++F  M +S +  D VA+ +++   A        ++   + G+ +HA +
Sbjct: 216 LVQAGSVDDALRLFARMCRSGVRVDPVAVSSVLGSCAQACASEFDVVRAFRLGQCIHALI 275

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC---AR 334
           V  G  S+  + NS+I MY+KC  +D +  VF+ +   S VSW  +I+G+ Q G    A 
Sbjct: 276 VRKGFGSDQHVGNSLIDMYTKCMQMDEAVKVFDSLPNISTVSWNILITGFGQAGSYAKAL 335

Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEI-------------------CL-Q 374
           E LN   +   E  +   S  L S + A   L+A  +                   C  +
Sbjct: 336 EVLNLMEESGSEPNEVTYSNMLASCIKARDVLSARAMFDKISRPSVTTWNTLLSGYCQEE 395

Query: 375 LHGIAFEAGFPRY--------RSVQNCLISSYSKCGNVDLAYIVFE-------------- 412
           LH    E  F R         R+    ++SS S+ G +DL   V                
Sbjct: 396 LHQDTVEL-FRRMQHQNVQPDRTTLAVILSSCSRLGILDLGTQVHSASVRFLLHNDMFVA 454

Query: 413 -----------EMGFLR---------DVVSWNTIIYGYGVNGHGETALALYHKMTETGEV 452
                      ++G  R         DVV WN++I G  ++   E A   + +M   G +
Sbjct: 455 SGLVDMYSKCGQIGIARIIFNRMTERDVVCWNSMISGLAIHSLNEEAFDFFKQMRGNGMM 514

Query: 453 PDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY--GCVVDLLARAGCLSDA 510
           P  S+Y S++N+C        G  I  Q++++      Q  Y    ++D+ A+ G + DA
Sbjct: 515 PTESSYASMINSCARLSSVPQGRQIHAQIVKDGY---DQNVYVGSALIDMYAKCGNMDDA 571


>gi|449461477|ref|XP_004148468.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Cucumis sativus]
 gi|449515698|ref|XP_004164885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Cucumis sativus]
          Length = 837

 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 159/552 (28%), Positives = 270/552 (48%), Gaps = 25/552 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + L+  Y K G+I +A  +FD +  K  V+W+ +I GY+ +G  E S++ F+ MM
Sbjct: 176 DVYVGTSLVVLYAKHGEIDKARLVFDGLVLKTPVTWTAIITGYTKSGRSEVSLQLFNLMM 235

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
            S ++P+ + +  +L A + L  L+  + IH  +++   + D                  
Sbjct: 236 ESNVIPDKYVLSSILNACSVLGYLKGGKQIHAYVLRSETKMDVSTYNVLIDFYTKCGRVK 295

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               LF+ L    ++S   ++AG++ N    +AV L       G  P+     +V+  C 
Sbjct: 296 AGKALFDRLDVKNIISWTTMIAGYMQNSYDWEAVELVGEMFRMGWKPDEYACSSVLTSCG 355

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
           ++ +      IH   IK+ L  D  V N+++DMYS    LD A ++F  + C  V+ +  
Sbjct: 356 SVDALQHGRQIHSYVIKVCLEHDNFVTNALIDMYSKCNALDDAKRVFDVVTCHSVVYYNA 415

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+  +    Y   AL++F+EMR   +    +  ++L+ ++A L  L+  KQ+H  ++  G
Sbjct: 416 MIEGYSRQGYLCGALEVFQEMRLKHVSPSFLTFVSLLGLSAALLCLQLSKQIHGLIIKYG 475

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
              +   S+++I +YSKC  +  +R VF   T K +V W ++ SGY     + EA   + 
Sbjct: 476 FSLDKFTSSALIDVYSKCSCIRDARYVFEGTTNKDIVVWNSLFSGYNLQLKSEEAFKLYS 535

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
            + Q   +  +  T  ++ TA+  LA+L    Q H    + G      + N L+  Y+KC
Sbjct: 536 DL-QLSRERPNEFTFAALTTAASILASLPHGQQFHNQVMKMGLESDPFITNALVDMYAKC 594

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G+V+ A  +F      +D   WN++I  Y  +G  E AL ++  M      P+  T++S+
Sbjct: 595 GSVEEAEKIFSS-SVWKDTACWNSMISMYAQHGKVEEALRMFETMVSNNINPNYVTFVSV 653

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L+AC H G   DGL  +N M     ++P  EHY  VV LL RAG L++A     K+    
Sbjct: 654 LSACSHVGFVEDGLQHYNSMARYG-IEPGIEHYASVVTLLGRAGRLTEAREFIEKMTIRP 712

Query: 522 GPNIWRALLSGC 533
              +WR+LLS C
Sbjct: 713 AALVWRSLLSAC 724



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 152/569 (26%), Positives = 277/569 (48%), Gaps = 34/569 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + S+ LL +YFK G + +A  LFD++P +N+VSWS V+  Y+  G++EK++  F    
Sbjct: 74  DVFLSNLLLHSYFKIGSVFDAGTLFDKMPNRNLVSWSSVVSMYTQLGYNEKALLYFLEFQ 133

Query: 64  LSGLLP-NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG------------- 109
            + +   N + +  ++ A       E    +H  ++K G   D++ G             
Sbjct: 134 RTCVDKLNEYILASIIRACVQRDGGEPGSQVHSYVIKSGFGEDVYVGTSLVVLYAKHGEI 193

Query: 110 -----------LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                      LK P  V+  AI+ G+  +   + ++ LFN    S ++P+   + +++ 
Sbjct: 194 DKARLVFDGLVLKTP--VTWTAIITGYTKSGRSEVSLQLFNLMMESNVIPDKYVLSSILN 251

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C  LG     + IH   ++    +DVS  N ++D Y+    + A   +F  ++ K++IS
Sbjct: 252 ACSVLGYLKGGKQIHAYVLRSETKMDVSTYNVLIDFYTKCGRVKAGKALFDRLDVKNIIS 311

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           WT M+  ++   Y  +A+++  EM +     D  A  ++++    +  L+ G+Q+H+ V+
Sbjct: 312 WTTMIAGYMQNSYDWEAVELVGEMFRMGWKPDEYACSSVLTSCGSVDALQHGRQIHSYVI 371

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
              L+ +  ++N++I MYSKC  LD ++ VF+ +T  S+V + A+I GY + G    AL 
Sbjct: 372 KVCLEHDNFVTNALIDMYSKCNALDDAKRVFDVVTCHSVVYYNAMIEGYSRQGYLCGALE 431

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
            F +MR +   S   +T VS+L  S  L  L++  Q+HG+  + GF   +   + LI  Y
Sbjct: 432 VFQEMRLKHV-SPSFLTFVSLLGLSAALLCLQLSKQIHGLIIKYGFSLDKFTSSALIDVY 490

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
           SKC  +  A  VFE     +D+V WN++  GY +    E A  LY  +  + E P+  T+
Sbjct: 491 SKCSCIRDARYVFEGTTN-KDIVVWNSLFSGYNLQLKSEEAFKLYSDLQLSRERPNEFTF 549

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
            ++  A         G    NQ+++   ++        +VD+ A+ G + +A  +    +
Sbjct: 550 AALTTAASILASLPHGQQFHNQVMKMG-LESDPFITNALVDMYAKCGSVEEAEKIFSSSV 608

Query: 519 EGMGPNIWRALLSGCVLHVGRFQDAEALR 547
                  W +++S    H G+ +  EALR
Sbjct: 609 -WKDTACWNSMISMYAQH-GKVE--EALR 633



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 138/521 (26%), Positives = 240/521 (46%), Gaps = 54/521 (10%)

Query: 54  KSMKAFSHMM--LSGLLPNSFTMVGVLVAAAGLQNLELA----------RSIHGLMVKFG 101
           +S K FS +   +  +LP SF+   V V    L NL LA          R +H  +V +G
Sbjct: 12  RSCKFFSSISPNVQPMLP-SFSSQNVKVKGRALANLLLAPVSNKSILYYRKVHCQVVLWG 70

Query: 102 LESD----------------------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLF- 138
           L+ D                      LF+ + N  LVS +++V+ +      ++A+L F 
Sbjct: 71  LQYDVFLSNLLLHSYFKIGSVFDAGTLFDKMPNRNLVSWSSVVSMYTQLGYNEKALLYFL 130

Query: 139 NFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCL 198
            F R      N   + ++IR CV          +H   IK G   DV V  S++ +Y+  
Sbjct: 131 EFQRTCVDKLNEYILASIIRACVQRDGGEPGSQVHSYVIKSGFGEDVYVGTSLVVLYAKH 190

Query: 199 MDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLI 258
            ++D A  +F  +  K  ++WT ++  +     +  +L++F  M +S +I D   L +++
Sbjct: 191 GEIDKARLVFDGLVLKTPVTWTAIITGYTKSGRSEVSLQLFNLMMESNVIPDKYVLSSIL 250

Query: 259 SVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLV 318
           +  ++LG LK GKQ+HA V+    + ++   N +I  Y+KCG + + +++F+++  K+++
Sbjct: 251 NACSVLGYLKGGKQIHAYVLRSETKMDVSTYNVLIDFYTKCGRVKAGKALFDRLDVKNII 310

Query: 319 SWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGI 378
           SWT +I+GY+QN    EA+    +M +      D     S+LT+ G + AL+   Q+H  
Sbjct: 311 SWTTMIAGYMQNSYDWEAVELVGEMFRMGWKP-DEYACSSVLTSCGSVDALQHGRQIHSY 369

Query: 379 AFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGET 438
             +        V N LI  YSKC  +D A  VF+ +     VV +N +I GY   G+   
Sbjct: 370 VIKVCLEHDNFVTNALIDMYSKCNALDDAKRVFDVVT-CHSVVYYNAMIEGYSRQGYLCG 428

Query: 439 ALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEE----NKVKPSQEHY 494
           AL ++ +M      P   T++S+L              I   +I+     +K   S    
Sbjct: 429 ALEVFQEMRLKHVSPSFLTFVSLLGLSAALLCLQLSKQIHGLIIKYGFSLDKFTSS---- 484

Query: 495 GCVVDLLARAGCLSDASGLAGKLLEGMGPN---IWRALLSG 532
             ++D+ ++  C+ DA      + EG       +W +L SG
Sbjct: 485 -ALIDVYSKCSCIRDAR----YVFEGTTNKDIVVWNSLFSG 520



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/409 (22%), Positives = 190/409 (46%), Gaps = 31/409 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + ++ L+  Y K   + +A+ +FD +   +VV ++ +I GYS  G+   +++ F  M 
Sbjct: 378 DNFVTNALIDMYSKCNALDDAKRVFDVVTCHSVVYYNAMIEGYSRQGYLCGALEVFQEMR 437

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
           L  + P+  T V +L  +A L  L+L++ IHGL++K+G   D                  
Sbjct: 438 LKHVSPSFLTFVSLLGLSAALLCLQLSKQIHGLIIKYGFSLDKFTSSALIDVYSKCSCIR 497

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +FEG  N  +V  N++ +G+      ++A  L++  + S   PN  T   +     
Sbjct: 498 DARYVFEGTTNKDIVVWNSLFSGYNLQLKSEEAFKLYSDLQLSRERPNEFTFAALTTAAS 557

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            L S    +  H   +K+GL  D  + N+++DMY+    ++ A +IF     KD   W  
Sbjct: 558 ILASLPHGQQFHNQVMKMGLESDPFITNALVDMYAKCGSVEEAEKIFSSSVWKDTACWNS 617

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+ ++       +AL++F  M  + I  + V  ++++S  + +G ++ G Q +  +   G
Sbjct: 618 MISMYAQHGKVEEALRMFETMVSNNINPNYVTFVSVLSACSHVGFVEDGLQHYNSMARYG 677

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISGYVQNG---CAREAL 337
           ++  +    S++ +  + G L  +R    ++T   + + W +++S     G    A+ A 
Sbjct: 678 IEPGIEHYASVVTLLGRAGRLTEAREFIEKMTIRPAALVWRSLLSACRVFGNVELAKHAA 737

Query: 338 NQFIKMRQEKTDSVDSITLVSILTAS---GELAALEICLQLHGIAFEAG 383
              I +  +  DS   + L +I  +    G++  L + + ++G+  E G
Sbjct: 738 EMAISI--DPMDSGSYVMLSNIFASKGMWGDVKRLRLKMDVNGVVKEPG 784



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 89/184 (48%), Gaps = 22/184 (11%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D + SS L+  Y K   I++A  +F+    K++V W+ +  GY++    E++ K +S +
Sbjct: 478 LDKFTSSALIDVYSKCSCIRDARYVFEGTTNKDIVVWNSLFSGYNLQLKSEEAFKLYSDL 537

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPYL----- 115
            LS   PN FT   +  AA+ L +L   +  H  ++K GLESD F    L + Y      
Sbjct: 538 QLSRERPNEFTFAALTTAASILASLPHGQQFHNQVMKMGLESDPFITNALVDMYAKCGSV 597

Query: 116 --------------VSC-NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                          +C N++++ +  +   ++A+ +F     + + PN VT ++V+  C
Sbjct: 598 EEAEKIFSSSVWKDTACWNSMISMYAQHGKVEEALRMFETMVSNNINPNYVTFVSVLSAC 657

Query: 161 VALG 164
             +G
Sbjct: 658 SHVG 661


>gi|225457861|ref|XP_002279169.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g77010, mitochondrial-like [Vitis vinifera]
          Length = 685

 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 161/593 (27%), Positives = 276/593 (46%), Gaps = 84/593 (14%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           ++LL  Y +   ++EA+ LF+E+P++N  SW+ +I GY  +G   KS++ F  M      
Sbjct: 46  NRLLQMYSRCNSMREAQQLFEEMPKRNCFSWNTMIEGYLKSGSKGKSLELFDSMPHK--- 102

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINN 128
            ++F+   V+   A   NLE+AR              LF  +     ++ N+++ G+  N
Sbjct: 103 -DAFSWNVVISGFAKEGNLEVARR-------------LFNEMPWKNGIAWNSMIHGYACN 148

Query: 129 KLFQQAVLLFNFFRGSGL---VPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDV 185
              ++AV LF     + L     +   + TV+  C  LG+    + IH   +   +  D 
Sbjct: 149 GRPKEAVGLFKDLSLNPLERFCGDTFVLATVVGACTNLGALDCGKQIHARIVVDEVEFDS 208

Query: 186 SVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS--------------------------- 218
            + +S++++Y    D+D+A  +   M+  D  S                           
Sbjct: 209 VLGSSLVNLYGKCGDIDSANHVLNLMKEPDAFSLSALISGYASCGRMNDARRIFCLKSNA 268

Query: 219 ----WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
               W  M+  +V    A +AL++F  MR+  +  D     +++S  + LG + +G Q+H
Sbjct: 269 CVVLWNSMISGYVANNEALEALELFNNMRRKGVQEDYSTFASVLSACSTLGIIDQGIQVH 328

Query: 275 AQVVLGGLQSELRLS-------------------------------NSIIAMYSKCGDLD 303
           A V   G  +++ +                                NS+I +YS CG +D
Sbjct: 329 AHVYKVGFTNDIIIDSALVDMYSKCRRPDDACKLFSDLQAYDTILLNSMITVYSNCGRID 388

Query: 304 SSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTAS 363
            +R +F+ +  KSL+SW ++I G+ QN C  EAL+ F +M +     +D  +L  +++A 
Sbjct: 389 DARQIFDTMPSKSLISWNSMIVGFSQNACPIEALDLFCEMNKLGL-RMDKFSLAGVISAC 447

Query: 364 GELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSW 423
             +++LE+  Q+   A   G    + +   L+  Y KCG V+    +F+ M    D V W
Sbjct: 448 ASISSLELGEQIFARATIIGLEFDQIISTSLVDFYCKCGLVEHGRKLFDRM-MKSDEVPW 506

Query: 424 NTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIE 483
           N+++ GY  NGHG  AL ++ +M   G  P   T++ +L+AC H GL  +G   F  M  
Sbjct: 507 NSMLMGYATNGHGIEALNVFDQMRSVGVQPTDITFVGVLSACDHCGLVEEGRKWFYAMKL 566

Query: 484 ENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
           +  + P  EHY C+VDL ARAG L DA  L  ++      ++W ++L GCV H
Sbjct: 567 DYHINPGIEHYSCMVDLYARAGLLEDAMNLIEQMPLKADTSMWSSVLRGCVAH 619



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 131/530 (24%), Positives = 232/530 (43%), Gaps = 103/530 (19%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  D ++ + ++S + K G ++ A  LF+E+P KN ++W+ +IHGY+ NG  ++++  F 
Sbjct: 100 PHKDAFSWNVVISGFAKEGNLEVARRLFNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFK 159

Query: 61  HMMLSGL---LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG-------- 109
            + L+ L     ++F +  V+ A   L  L+  + IH  +V   +E D   G        
Sbjct: 160 DLSLNPLERFCGDTFVLATVVGACTNLGALDCGKQIHARIVVDEVEFDSVLGSSLVNLYG 219

Query: 110 --------------LKNPY----------LVSC---------------------NAIVAG 124
                         +K P             SC                     N++++G
Sbjct: 220 KCGDIDSANHVLNLMKEPDAFSLSALISGYASCGRMNDARRIFCLKSNACVVLWNSMISG 279

Query: 125 FINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILD 184
           ++ N    +A+ LFN  R  G+  +  T  +V+  C  LG       +H    K+G   D
Sbjct: 280 YVANNEALEALELFNNMRRKGVQEDYSTFASVLSACSTLGIIDQGIQVHAHVYKVGFTND 339

Query: 185 VSVNNSVLDMYS--------CLM-----------------------DLDAAIQIFREMEC 213
           + ++++++DMYS        C +                        +D A QIF  M  
Sbjct: 340 IIIDSALVDMYSKCRRPDDACKLFSDLQAYDTILLNSMITVYSNCGRIDDARQIFDTMPS 399

Query: 214 KDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQL 273
           K +ISW  M+  F       +AL +F EM K  +  D  +L  +IS  A +  L+ G+Q+
Sbjct: 400 KSLISWNSMIVGFSQNACPIEALDLFCEMNKLGLRMDKFSLAGVISACASISSLELGEQI 459

Query: 274 HAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA 333
            A+  + GL+ +  +S S++  Y KCG ++  R +F+++ +   V W +++ GY  NG  
Sbjct: 460 FARATIIGLEFDQIISTSLVDFYCKCGLVEHGRKLFDRMMKSDEVPWNSMLMGYATNGHG 519

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALE--------ICLQLHGIAFEAGFP 385
            EALN F +MR       D IT V +L+A      +E        + L  H      G  
Sbjct: 520 IEALNVFDQMRSVGVQPTD-ITFVGVLSACDHCGLVEEGRKWFYAMKLDYH---INPGIE 575

Query: 386 RYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGH 435
            Y    +C++  Y++ G ++ A  + E+M    D   W++++ G   +G+
Sbjct: 576 HY----SCMVDLYARAGLLEDAMNLIEQMPLKADTSMWSSVLRGCVAHGN 621



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 89/353 (25%), Positives = 150/353 (42%), Gaps = 76/353 (21%)

Query: 160 CVALGSRALCELIHGLTIKLGLILDV-SVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
           C   GS     L+H L +K G++  V S+ N +L MYS    +  A Q+F EM  ++  S
Sbjct: 16  CNNYGSIYRGRLLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREAQQLFEEMPKRNCFS 75

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           W  M+  ++     G +L++F  M       D  +                         
Sbjct: 76  WNTMIEGYLKSGSKGKSLELFDSMPHK----DAFSW------------------------ 107

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
                      N +I+ ++K G+L+ +R +FN++  K+ ++W ++I GY  NG  +EA+ 
Sbjct: 108 -----------NVVISGFAKEGNLEVARRLFNEMPWKNGIAWNSMIHGYACNGRPKEAVG 156

Query: 339 QFIKMRQEKTDSV--DSITLVSILTASGELAALEICLQLHG--IAFEAGFPRYRSVQNCL 394
            F  +     +    D+  L +++ A   L AL+   Q+H   +  E  F     + + L
Sbjct: 157 LFKDLSLNPLERFCGDTFVLATVVGACTNLGALDCGKQIHARIVVDEVEFDSV--LGSSL 214

Query: 395 ISSYSKCGNVDLAYIVFEEM------------------GFLRD------------VVSWN 424
           ++ Y KCG++D A  V   M                  G + D            VV WN
Sbjct: 215 VNLYGKCGDIDSANHVLNLMKEPDAFSLSALISGYASCGRMNDARRIFCLKSNACVVLWN 274

Query: 425 TIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVI 477
           ++I GY  N     AL L++ M   G   D ST+ S+L+AC   G+ + G+ +
Sbjct: 275 SMISGYVANNEALEALELFNNMRRKGVQEDYSTFASVLSACSTLGIIDQGIQV 327



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 132/288 (45%), Gaps = 52/288 (18%)

Query: 265 GDLKRGKQLHAQVVLGG-LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAI 323
           G + RG+ LH   +  G L S L + N ++ MYS+C  +  ++ +F ++ +++  SW  +
Sbjct: 20  GSIYRGRLLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREAQQLFEEMPKRNCFSWNTM 79

Query: 324 ISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG 383
           I GY+++G   ++L  F  M                                H  AF   
Sbjct: 80  IEGYLKSGSKGKSLELFDSMP-------------------------------HKDAFS-- 106

Query: 384 FPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALY 443
                   N +IS ++K GN+++A  +F EM + ++ ++WN++I+GY  NG  + A+ L+
Sbjct: 107 -------WNVVISGFAKEGNLEVARRLFNEMPW-KNGIAWNSMIHGYACNGRPKEAVGLF 158

Query: 444 HKMTETGE---VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDL 500
             ++         D+    +++ AC + G  + G  I  +++ + +V+        +V+L
Sbjct: 159 KDLSLNPLERFCGDTFVLATVVGACTNLGALDCGKQIHARIVVD-EVEFDSVLGSSLVNL 217

Query: 501 LARAGCLSDASGLAGKLLEGMGPNIW--RALLSGCVLHVGRFQDAEAL 546
             + G +  A+ +   + E   P+ +   AL+SG     GR  DA  +
Sbjct: 218 YGKCGDIDSANHVLNLMKE---PDAFSLSALISG-YASCGRMNDARRI 261



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 76/173 (43%), Gaps = 13/173 (7%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ L+  Y K G ++    LFD + + + V W+ ++ GY+ NG   +++  F  M   G+
Sbjct: 475 STSLVDFYCKCGLVEHGRKLFDRMMKSDEVPWNSMLMGYATNGHGIEALNVFDQMRSVGV 534

Query: 68  LPNSFTMVGVLVAAAGLQNLELARS-IHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFI 126
            P   T VGVL A      +E  R   + + + + +         NP +   + +V  + 
Sbjct: 535 QPTDITFVGVLSACDHCGLVEEGRKWFYAMKLDYHI---------NPGIEHYSCMVDLYA 585

Query: 127 NNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKL 179
              L + A+   N      L  +     +V+RGCVA G+  L + +    I L
Sbjct: 586 RAGLLEDAM---NLIEQMPLKADTSMWSSVLRGCVAHGNNILGKKVAKRIIDL 635


>gi|297830924|ref|XP_002883344.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329184|gb|EFH59603.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 824

 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 165/548 (30%), Positives = 278/548 (50%), Gaps = 32/548 (5%)

Query: 27  LFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQN 86
           +FD +  KNVV+W+ +I  Y   G + ++ + F+ MM   + P+  + V V  A A  ++
Sbjct: 174 VFDNMRRKNVVAWNTLISWYVKTGRNAEACRQFAIMMRMEIKPSPVSFVNVFPAVATSRS 233

Query: 87  LELARSIHGLMVKFGLE--SDLF------------EGLKNPYLV--SC--------NAIV 122
           ++ A   +GLM+K G E   DLF              L++   V  SC        N ++
Sbjct: 234 IKKANVFYGLMLKLGDEYVKDLFVVSSAISMYAELGDLESSRRVFDSCVERNIEVWNTMI 293

Query: 123 AGFINNKLFQQAVLLFNFFRGSG-LVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGL 181
             ++ N    +++ LF    GS  +V + VT L        L    L    HG   K   
Sbjct: 294 GVYVQNDCLVESIELFLEAIGSKEIVSDEVTFLLAASAVSGLQQVELGRQFHGFVSKNFR 353

Query: 182 ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFRE 241
            L + + NS++ MYS    +  +  +F  M  +DV+SW  M+  FV      + L +  E
Sbjct: 354 ELPIVIINSLMVMYSRCGFVQKSFGVFHSMRERDVVSWNTMISAFVQNGLDDEGLMLVYE 413

Query: 242 MRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGD 301
           M+K     D + +  L+S  + L + + GKQ H  ++  G+Q E  +++ +I MY+K G 
Sbjct: 414 MQKQGFKIDYITVTALLSAASNLRNKEIGKQTHGFLIRQGIQFE-GMNSYLIDMYAKSGL 472

Query: 302 LDSSRSVF--NQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSI 359
           +  S+ +F  +   E+   +W ++ISGY QNG   E    F KM ++     +++T+ SI
Sbjct: 473 IRISQKLFEGSGYAERDQATWNSMISGYTQNGHTEETFLVFRKMLEQNIRP-NAVTVASI 531

Query: 360 LTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRD 419
           L A  ++ ++++  QLHG +      +   V + L+  YSK G +  A  +F +    R+
Sbjct: 532 LPACSQVGSVDLGKQLHGFSIRQYLDQNVFVASALVDMYSKAGAIKYAENMFSQTK-ERN 590

Query: 420 VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFN 479
            V++ T+I GYG +G GE A++L+  M E G  PD+  ++++L+AC ++GL ++GL IF 
Sbjct: 591 SVTYTTMILGYGQHGMGERAISLFLSMQELGIKPDAIAFVAVLSACSYSGLVDEGLKIFE 650

Query: 480 QMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL-LEGMGPNIWRALLSGCVLHVG 538
            M E   ++PS EHY C+ D+L R G +++A      L  EG    +W +LL  C LH G
Sbjct: 651 DMREVYNIQPSSEHYCCITDMLGRVGRVNEAYEFVKGLGEEGNIAELWGSLLGSCRLH-G 709

Query: 539 RFQDAEAL 546
             + AE +
Sbjct: 710 ELELAETV 717



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 142/563 (25%), Positives = 265/563 (47%), Gaps = 51/563 (9%)

Query: 1   PCIDPYNSS--KLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKA 58
           P + P   S    LS   + G  + A  LFD IP+   V W+ +I G+  N    +++  
Sbjct: 33  PTLTPQTPSIRSRLSKICQEGNPQLARQLFDAIPKPTTVLWNTIIIGFICNNLPHEALLF 92

Query: 59  FSHMMLSGLLP--NSFTMVGVLVAAAGLQNLELARSIHGLMVK----------------- 99
           +S M  +      +++T    L A A  +NL+  +++H  +++                 
Sbjct: 93  YSRMKKTAPFTKCDAYTYSSTLKACAETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMY 152

Query: 100 ---------------FGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGS 144
                          + +   +F+ ++   +V+ N +++ ++      +A   F      
Sbjct: 153 VSCLNAPGSELDCFEYDVVRKVFDNMRRKNVVAWNTLISWYVKTGRNAEACRQFAIMMRM 212

Query: 145 GLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLG--LILDVSVNNSVLDMYSCLMDLD 202
            + P+ V+ + V        S     + +GL +KLG   + D+ V +S + MY+ L DL+
Sbjct: 213 EIKPSPVSFVNVFPAVATSRSIKKANVFYGLMLKLGDEYVKDLFVVSSAISMYAELGDLE 272

Query: 203 AAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSR-IICDTVALLNLISVN 261
           ++ ++F     +++  W  M+G++V  +   +++++F E   S+ I+ D V  L   S  
Sbjct: 273 SSRRVFDSCVERNIEVWNTMIGVYVQNDCLVESIELFLEAIGSKEIVSDEVTFLLAASAV 332

Query: 262 AILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWT 321
           + L  ++ G+Q H  V     +  + + NS++ MYS+CG +  S  VF+ + E+ +VSW 
Sbjct: 333 SGLQQVELGRQFHGFVSKNFRELPIVIINSLMVMYSRCGFVQKSFGVFHSMRERDVVSWN 392

Query: 322 AIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFE 381
            +IS +VQNG   E L    +M Q++   +D IT+ ++L+A+  L   EI  Q HG    
Sbjct: 393 TMISAFVQNGLDDEGLMLVYEM-QKQGFKIDYITVTALLSAASNLRNKEIGKQTHGFLIR 451

Query: 382 AGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFL-RDVVSWNTIIYGYGVNGHGETAL 440
            G  ++  + + LI  Y+K G + ++  +FE  G+  RD  +WN++I GY  NGH E   
Sbjct: 452 QGI-QFEGMNSYLIDMYAKSGLIRISQKLFEGSGYAERDQATWNSMISGYTQNGHTEETF 510

Query: 441 ALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVI----FNQMIEENKVKPSQEHYGC 496
            ++ KM E    P++ T  SIL AC   G  + G  +      Q +++N    S      
Sbjct: 511 LVFRKMLEQNIRPNAVTVASILPACSQVGSVDLGKQLHGFSIRQYLDQNVFVAS-----A 565

Query: 497 VVDLLARAGCLSDASGLAGKLLE 519
           +VD+ ++AG +  A  +  +  E
Sbjct: 566 LVDMYSKAGAIKYAENMFSQTKE 588



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 142/287 (49%), Gaps = 31/287 (10%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+  Y + G ++++  +F  + E++VVSW+ +I  +  NG  ++ +     M   G   +
Sbjct: 363 LMVMYSRCGFVQKSFGVFHSMRERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFKID 422

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLV-------------- 116
             T+  +L AA+ L+N E+ +  HG +++ G++   FEG+ N YL+              
Sbjct: 423 YITVTALLSAASNLRNKEIGKQTHGFLIRQGIQ---FEGM-NSYLIDMYAKSGLIRISQK 478

Query: 117 -------------SCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
                        + N++++G+  N   ++  L+F       + PNAVT+ +++  C  +
Sbjct: 479 LFEGSGYAERDQATWNSMISGYTQNGHTEETFLVFRKMLEQNIRPNAVTVASILPACSQV 538

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
           GS  L + +HG +I+  L  +V V ++++DMYS    +  A  +F + + ++ +++T M+
Sbjct: 539 GSVDLGKQLHGFSIRQYLDQNVFVASALVDMYSKAGAIKYAENMFSQTKERNSVTYTTMI 598

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG 270
             +        A+ +F  M++  I  D +A + ++S  +  G +  G
Sbjct: 599 LGYGQHGMGERAISLFLSMQELGIKPDAIAFVAVLSACSYSGLVDEG 645



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 7/96 (7%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           +S L+  Y K+G IK AEN+F +  E+N V+++ +I GY  +G  E+++  F  M   G+
Sbjct: 563 ASALVDMYSKAGAIKYAENMFSQTKERNSVTYTTMILGYGQHGMGERAISLFLSMQELGI 622

Query: 68  LPNSFTMVGVLVAAA-------GLQNLELARSIHGL 96
            P++   V VL A +       GL+  E  R ++ +
Sbjct: 623 KPDAIAFVAVLSACSYSGLVDEGLKIFEDMREVYNI 658


>gi|147833409|emb|CAN68525.1| hypothetical protein VITISV_018083 [Vitis vinifera]
          Length = 1796

 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 161/593 (27%), Positives = 276/593 (46%), Gaps = 84/593 (14%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           ++LL  Y +   ++EA+ LF+E+P++N  SW+ +I GY  +G   KS++ F  M      
Sbjct: 46  NRLLQMYSRCNSMREAQQLFEEMPKRNCFSWNTMIEGYLKSGSKGKSLELFDSMPHK--- 102

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINN 128
            ++F+   V+   A   NLE+AR              LF  +     ++ N+++ G+  N
Sbjct: 103 -DAFSWNVVISGFAKEGNLEVARR-------------LFNEMPWKNGIAWNSMIHGYACN 148

Query: 129 KLFQQAVLLFNFFRGSGL---VPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDV 185
              ++AV LF     + L     +   + TV+  C  LG+    + IH   +   +  D 
Sbjct: 149 GRPKEAVGLFKDLSLNPLERFCGDTFVLATVVGACTNLGALDCGKQIHARIVVDEVEFDS 208

Query: 186 SVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS--------------------------- 218
            + +S++++Y    D+D+A  +   M+  D  S                           
Sbjct: 209 VLGSSLVNLYGKCGDIDSANHVLNLMKEPDAFSLSALISGYASCGRMNDARRIFCLKSNX 268

Query: 219 ----WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
               W  M+  +V    A +AL++F  MR+  +  D     +++S  + LG + +G Q+H
Sbjct: 269 CVVLWNSMISGYVANNEALEALELFNNMRRKGVQEDYSTFASVLSACSTLGIIDQGIQVH 328

Query: 275 AQVVLGGLQSELRLS-------------------------------NSIIAMYSKCGDLD 303
           A V   G  +++ +                                NS+I +YS CG +D
Sbjct: 329 AHVYKVGFTNDIIIDSALVDMYSKCRRPDDACKLFSDLQAYDTILLNSMITVYSNCGRID 388

Query: 304 SSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTAS 363
            +R +F+ +  KSL+SW ++I G+ QN C  EAL+ F +M +     +D  +L  +++A 
Sbjct: 389 DARQIFDTMPSKSLISWNSMIVGFSQNACPIEALDLFCEMNKLGL-RMDKFSLAGVISAC 447

Query: 364 GELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSW 423
             +++LE+  Q+   A   G    + +   L+  Y KCG V+    +F+ M    D V W
Sbjct: 448 ASISSLELGEQIFARATIIGLEFDQIISTSLVDFYCKCGLVEHGRKLFDRM-MKSDEVPW 506

Query: 424 NTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIE 483
           N+++ GY  NGHG  AL ++ +M   G  P   T++ +L+AC H GL  +G   F  M  
Sbjct: 507 NSMLMGYATNGHGIEALNVFDQMRSVGVQPTDITFVGVLSACDHCGLVEEGRKWFYAMKL 566

Query: 484 ENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
           +  + P  EHY C+VDL ARAG L DA  L  ++      ++W ++L GCV H
Sbjct: 567 DYHINPGIEHYSCMVDLYARAGLLEDAMNLIEQMPLKADTSMWSSVLRGCVAH 619



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 156/549 (28%), Positives = 259/549 (47%), Gaps = 60/549 (10%)

Query: 6    YNSSKLLSN-----YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
            +N+   L N     Y + G   ++  +F++I +KN++SW+I              +KAF 
Sbjct: 741  FNTHTFLGNRCLDLYSQLGTGNDSLRVFEDIIDKNLISWNIF-------------LKAFV 787

Query: 61   HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNA 120
                                      LE AR             D+F+ +    +VS N 
Sbjct: 788  R----------------------FGELERAR-------------DVFDEMPKRDVVSWNT 812

Query: 121  IVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLG 180
            +++G+++  LF  A   F+  + +G+ P+  T  T++     + S    + IH   I+ G
Sbjct: 813  MISGYVSFGLFDDAFRFFSEMQKAGIRPSGFTYSTLLS---FVSSACRGKQIHASMIRNG 869

Query: 181  LIL-DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIF 239
            + L +V V NS++ MY     +D A  +F  ME  D+ISW  ++       Y   AL+ F
Sbjct: 870  VDLSNVVVGNSLIGMYGKFGVVDYAFGVFITMEELDIISWNSLIWSCGKSGYQNLALRQF 929

Query: 240  REMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKC 299
              MR      D   +  +I+V + L DL++G+Q+ A  +  G  S   +S++ I ++SKC
Sbjct: 930  VLMRSVGYSPDQFTVSTVITVCSNLQDLEKGEQIFALCIRVGFLSNSIVSSASIDLFSKC 989

Query: 300  GDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSI 359
              L+ S  VF +I +   V   A+IS Y  +G    AL  F+   +E     +  TL  +
Sbjct: 990  NRLEDSVRVFEEIYQWDSVLCNAMISSYAWHGFGENALQLFVLTLRENLRPTE-FTLSIV 1048

Query: 360  LTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRD 419
            L+A   L  ++   Q+H +  ++G      V + L+  Y+K G +D A   F ++G  RD
Sbjct: 1049 LSAVSILLPVDQGSQIHSLVVKSGLESDVIVASSLVEMYAKFGLIDSAMKTFAKIG-ARD 1107

Query: 420  VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFN 479
            ++SWNT+I G   NG    AL ++ ++   G  PD  T   +L AC   GL ++GL IF+
Sbjct: 1108 LISWNTMIMGLAYNGRVSKALEIFKELLIGGPPPDEITLAGVLLACNVGGLVDEGLSIFS 1167

Query: 480  QMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVG- 538
             M +E  V P+ EHY C+VD+++R G L +A  +   +       IW +LL  C ++   
Sbjct: 1168 SMEKEYGVIPAIEHYACIVDMMSRGGKLKEAMDIVELMPHEPSGLIWGSLLCACEIYGDL 1227

Query: 539  RFQDAEALR 547
            RF +  A R
Sbjct: 1228 RFTERVAER 1236



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 131/530 (24%), Positives = 232/530 (43%), Gaps = 103/530 (19%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  D ++ + ++S + K G ++ A  LF+E+P KN ++W+ +IHGY+ NG  ++++  F 
Sbjct: 100 PHKDAFSWNVVISGFAKEGNLEVARRLFNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFK 159

Query: 61  HMMLSGL---LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG-------- 109
            + L+ L     ++F +  V+ A   L  L+  + IH  +V   +E D   G        
Sbjct: 160 DLSLNPLERFCGDTFVLATVVGACTNLGALDCGKQIHARIVVDEVEFDSVLGSSLVNLYG 219

Query: 110 --------------LKNPY----------LVSC---------------------NAIVAG 124
                         +K P             SC                     N++++G
Sbjct: 220 KCGDIDSANHVLNLMKEPDAFSLSALISGYASCGRMNDARRIFCLKSNXCVVLWNSMISG 279

Query: 125 FINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILD 184
           ++ N    +A+ LFN  R  G+  +  T  +V+  C  LG       +H    K+G   D
Sbjct: 280 YVANNEALEALELFNNMRRKGVQEDYSTFASVLSACSTLGIIDQGIQVHAHVYKVGFTND 339

Query: 185 VSVNNSVLDMYS--------CLM-----------------------DLDAAIQIFREMEC 213
           + ++++++DMYS        C +                        +D A QIF  M  
Sbjct: 340 IIIDSALVDMYSKCRRPDDACKLFSDLQAYDTILLNSMITVYSNCGRIDDARQIFDTMPS 399

Query: 214 KDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQL 273
           K +ISW  M+  F       +AL +F EM K  +  D  +L  +IS  A +  L+ G+Q+
Sbjct: 400 KSLISWNSMIVGFSQNACPIEALDLFCEMNKLGLRMDKFSLAGVISACASISSLELGEQI 459

Query: 274 HAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA 333
            A+  + GL+ +  +S S++  Y KCG ++  R +F+++ +   V W +++ GY  NG  
Sbjct: 460 FARATIIGLEFDQIISTSLVDFYCKCGLVEHGRKLFDRMMKSDEVPWNSMLMGYATNGHG 519

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALE--------ICLQLHGIAFEAGFP 385
            EALN F +MR       D IT V +L+A      +E        + L  H      G  
Sbjct: 520 IEALNVFDQMRSVGVQPTD-ITFVGVLSACDHCGLVEEGRKWFYAMKLDYH---INPGIE 575

Query: 386 RYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGH 435
            Y    +C++  Y++ G ++ A  + E+M    D   W++++ G   +G+
Sbjct: 576 HY----SCMVDLYARAGLLEDAMNLIEQMPLKADTSMWSSVLRGCVAHGN 621



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 123/525 (23%), Positives = 216/525 (41%), Gaps = 89/525 (16%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ L+  Y K G ++    LFD + + + V W+ ++ GY+ NG   +++  F  M   G+
Sbjct: 475 STSLVDFYCKCGLVEHGRKLFDRMMKSDEVPWNSMLMGYATNGHGIEALNVFDQMRSVGV 534

Query: 68  LPNSFTMVGVLVAAAGLQNLELARS-IHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFI 126
            P   T VGVL A      +E  R   + + + + +         NP +   + +V  + 
Sbjct: 535 QPTDITFVGVLSACDHCGLVEEGRKWFYAMKLDYHI---------NPGIEHYSCMVDLYA 585

Query: 127 NNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVS 186
              L + A+   N      L  +     +V+RGCVA G+  L + +         I+D+ 
Sbjct: 586 RAGLLEDAM---NLIEQMPLKADTSMWSSVLRGCVAHGNNILGKKV------AKRIIDLD 636

Query: 187 VNNS-----VLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGD------- 234
             NS     +  +Y+   D   + Q+ + M  K +   T        F+ AG+       
Sbjct: 637 PENSGAYVQLSGIYATFEDWGRSAQVRKLMYDKKIPKDT-------SFDIAGEEGXEGLS 689

Query: 235 ---------------ALKIFREM------RKSRIICDTVALLNL-------ISVNAILGD 266
                           L++  E       R  + +     LL          + +  LG+
Sbjct: 690 SETKEVTKMKQRQNLVLRLVAEKKRECDERDQKFMAARRTLLEFDMLIKVGFNTHTFLGN 749

Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSII-----------AMYSKCGDLDSSRSVFNQITEK 315
             R   L++Q  LG     LR+   II             + + G+L+ +R VF+++ ++
Sbjct: 750 --RCLDLYSQ--LGTGNDSLRVFEDIIDKNLISWNIFLKAFVRFGELERARDVFDEMPKR 805

Query: 316 SLVSWTAIISGYVQNGCAREALNQFIKMRQE--KTDSVDSITLVSILTASGELAALEICL 373
            +VSW  +ISGYV  G   +A   F +M++   +       TL+S ++++     +   +
Sbjct: 806 DVVSWNTMISGYVSFGLFDDAFRFFSEMQKAGIRPSGFTYSTLLSFVSSACRGKQIHASM 865

Query: 374 QLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVN 433
             +G+           V N LI  Y K G VD A+ VF  M  L D++SWN++I+  G +
Sbjct: 866 IRNGVDLSNVV-----VGNSLIGMYGKFGVVDYAFGVFITMEEL-DIISWNSLIWSCGKS 919

Query: 434 GHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIF 478
           G+   AL  +  M   G  PD  T  +++  C +      G  IF
Sbjct: 920 GYQNLALRQFVLMRSVGYSPDQFTVSTVITVCSNLQDLEKGEQIF 964



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 151/353 (42%), Gaps = 76/353 (21%)

Query: 160 CVALGSRALCELIHGLTIKLGLILDV-SVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
           C   GS      +H L +K G++  V S+ N +L MYS    +  A Q+F EM  ++  S
Sbjct: 16  CNNYGSIYRGRXLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREAQQLFEEMPKRNCFS 75

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           W  M+  ++     G +L++F          D++   +  S N                 
Sbjct: 76  WNTMIEGYLKSGSKGKSLELF----------DSMPHKDAFSWNV---------------- 109

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
                        +I+ ++K G+L+ +R +FN++  K+ ++W ++I GY  NG  +EA+ 
Sbjct: 110 -------------VISGFAKEGNLEVARRLFNEMPWKNGIAWNSMIHGYACNGRPKEAVG 156

Query: 339 QFIKMRQEKTDSV--DSITLVSILTASGELAALEICLQLHG--IAFEAGFPRYRSVQNCL 394
            F  +     +    D+  L +++ A   L AL+   Q+H   +  E  F     + + L
Sbjct: 157 LFKDLSLNPLERFCGDTFVLATVVGACTNLGALDCGKQIHARIVVDEVEFDSV--LGSSL 214

Query: 395 ISSYSKCGNVDLAYIVFEEM------------------GFLRD------------VVSWN 424
           ++ Y KCG++D A  V   M                  G + D            VV WN
Sbjct: 215 VNLYGKCGDIDSANHVLNLMKEPDAFSLSALISGYASCGRMNDARRIFCLKSNXCVVLWN 274

Query: 425 TIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVI 477
           ++I GY  N     AL L++ M   G   D ST+ S+L+AC   G+ + G+ +
Sbjct: 275 SMISGYVANNEALEALELFNNMRRKGVQEDYSTFASVLSACSTLGIIDQGIQV 327



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 132/289 (45%), Gaps = 54/289 (18%)

Query: 265 GDLKRGKQLHAQVVLGG-LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAI 323
           G + RG+ LH   +  G L S L + N ++ MYS+C  +  ++ +F ++ +++  SW  +
Sbjct: 20  GSIYRGRXLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREAQQLFEEMPKRNCFSWNTM 79

Query: 324 ISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG 383
           I GY+++G   ++L  F  M                                H  AF   
Sbjct: 80  IEGYLKSGSKGKSLELFDSMP-------------------------------HKDAFS-- 106

Query: 384 FPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALY 443
                   N +IS ++K GN+++A  +F EM + ++ ++WN++I+GY  NG  + A+ L+
Sbjct: 107 -------WNVVISGFAKEGNLEVARRLFNEMPW-KNGIAWNSMIHGYACNGRPKEAVGLF 158

Query: 444 HKMTETGEVP------DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCV 497
             ++     P      D+    +++ AC + G  + G  I  +++ + +V+        +
Sbjct: 159 KDLSLN---PLERFCGDTFVLATVVGACTNLGALDCGKQIHARIVVD-EVEFDSVLGSSL 214

Query: 498 VDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEAL 546
           V+L  + G +  A+ +   + E    ++  AL+SG     GR  DA  +
Sbjct: 215 VNLYGKCGDIDSANHVLNLMKEPDAFSL-SALISGYA-SCGRMNDARRI 261


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 158/575 (27%), Positives = 288/575 (50%), Gaps = 37/575 (6%)

Query: 11  LLSNYFKSGKIKEAENLFDEI--PEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           L++ Y K G +  A  LFD I   +++ VSW+ +I  +   G   +++  F  M   G+ 
Sbjct: 186 LIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGVA 245

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF---------------EGLKNP 113
            N++T V  L        ++L   IHG  +K    +D++               E  +  
Sbjct: 246 SNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADVYVANALIAMYAKCGRMEDAERV 305

Query: 114 Y-------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           +        VS N +++G + N+L++ A+  F   + S   P+ V++L +I      G+ 
Sbjct: 306 FASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNL 365

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYS---CLMDLDAAIQIFREMECKDVISWTRMM 223
              + +H   I+ GL  ++ + N+++DMY+   C+  +  A +   E   KD+ISWT ++
Sbjct: 366 LNGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHE---KDLISWTTII 422

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
             +   E   +A+ +FR+++   +  D + + +++   + L      +++H  V    L 
Sbjct: 423 AGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDL- 481

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
           +++ L N+I+ +Y + G  D +R  F  I  K +VSWT++I+  V NG   EAL  F  +
Sbjct: 482 ADIMLQNAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSL 541

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
           +Q      DSI ++S L+A+  L++L+   ++HG     GF     + + L+  Y+ CG 
Sbjct: 542 KQTNIQP-DSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGT 600

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           V+ +  +F  +   RD++ W ++I   G++G G  A+AL+ KMT+   +PD  T+L++L 
Sbjct: 601 VENSRKMFHSVK-QRDLILWTSMINANGMHGCGNEAIALFKKMTDENVIPDHITFLALLY 659

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
           AC H+GL  +G   F  M    +++P  EHY C+VDLL+R+  L +A      +      
Sbjct: 660 ACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYQFVRSMPIKPSS 719

Query: 524 NIWRALLSGCVLH----VGRFQDAEALRSGSQKKG 554
            +W ALL  C +H    +G     E L+S ++  G
Sbjct: 720 EVWCALLGACHIHSNKELGELAAKELLQSDTKNSG 754



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 144/481 (29%), Positives = 244/481 (50%), Gaps = 27/481 (5%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++KLL  Y K G +K+A  +FDE+ E+ + +W+ ++  +  +G + ++++ +  M + G+
Sbjct: 82  ATKLLHMYEKCGSLKDAVKVFDEMTERTIFTWNAMMGAFVSSGKYLEAIELYKEMRVLGV 141

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL----------------------ESD 105
             ++ T   VL A   L    L   IHG+ VK G                          
Sbjct: 142 AIDACTFPSVLKACGALGESRLGAEIHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGARV 201

Query: 106 LFEG--LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
           LF+G  ++    VS N+I++  +      +A+ LF   +  G+  N  T +  ++G    
Sbjct: 202 LFDGIMMEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGVASNTYTFVAALQGVEDP 261

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
               L   IHG  +K     DV V N+++ MY+    ++ A ++F  M C+D +SW  ++
Sbjct: 262 SFVKLGMGIHGAALKSNHFADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLL 321

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
              V  E   DAL  FR+M+ S    D V++LNLI+ +   G+L  GK++HA  +  GL 
Sbjct: 322 SGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRNGLD 381

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
           S +++ N++I MY+KC  +      F  + EK L+SWT II+GY QN C  EA+N F K+
Sbjct: 382 SNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNECHLEAINLFRKV 441

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
           + +  D VD + + S+L A   L +     ++HG  F+        +QN +++ Y + G+
Sbjct: 442 QVKGMD-VDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLADIM-LQNAIVNVYGEVGH 499

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
            D A   FE +   +D+VSW ++I     NG    AL L++ + +T   PDS   +S L+
Sbjct: 500 RDYARRAFESIRS-KDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALS 558

Query: 464 A 464
           A
Sbjct: 559 A 559



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 121/496 (24%), Positives = 243/496 (48%), Gaps = 32/496 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y ++ L++ Y K G++++AE +F  +  ++ VSW+ ++ G   N  +  ++  F  M 
Sbjct: 282 DVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQ 341

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------- 106
            S   P+  +++ ++ A+    NL   + +H   ++ GL+S++                 
Sbjct: 342 NSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVK 401

Query: 107 -----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                FE +    L+S   I+AG+  N+   +A+ LF   +  G+  + + + +V+R C 
Sbjct: 402 HMGYAFECMHEKDLISWTTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACS 461

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            L SR     IHG   K  L  D+ + N+++++Y  +   D A + F  +  KD++SWT 
Sbjct: 462 GLKSRNFIREIHGYVFKRDLA-DIMLQNAIVNVYGEVGHRDYARRAFESIRSKDIVSWTS 520

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+   V      +AL++F  ++++ I  D++A+++ +S  A L  LK+GK++H  ++  G
Sbjct: 521 MITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKG 580

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
              E  +++S++ MY+ CG +++SR +F+ + ++ L+ WT++I+    +GC  EA+  F 
Sbjct: 581 FFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNEAIALFK 640

Query: 342 KMRQEKTDSVDSITLVSILTA---SGELAALEICLQLHGIAFE-AGFPRYRSVQNCLISS 397
           KM  E     D IT +++L A   SG +   +   ++    ++   +P + +   C++  
Sbjct: 641 KMTDENVIP-DHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYA---CMVDL 696

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
            S+  +++ AY     M        W  ++    ++ + E    L  K     +  +S  
Sbjct: 697 LSRSNSLEEAYQFVRSMPIKPSSEVWCALLGACHIHSNKELG-ELAAKELLQSDTKNSGK 755

Query: 458 YLSILNACGHAGLTND 473
           Y  I N     G  ND
Sbjct: 756 YALISNIFAADGRWND 771


>gi|255570994|ref|XP_002526448.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534228|gb|EEF35943.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 557

 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 152/494 (30%), Positives = 255/494 (51%), Gaps = 32/494 (6%)

Query: 10  KLLSNYFKSGKIKEAENLFDEIPEK--NVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           KL+  Y    + + A +LFD+ P++   VV W+++I  Y+ NG   +++  +  M+  G+
Sbjct: 55  KLMHLYLVCNEDQYARHLFDKSPQRPRKVVIWNMLIRAYAWNGPFTEAINLYYKMLELGI 114

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL--------------------- 106
            P+ +T   VL A + LQ +E  + IH    +  L+SD+                     
Sbjct: 115 QPSKYTYPFVLKACSALQAIEEGKEIHIHAKRLDLDSDVYVSTAVVDMYAKCGCLDDAEM 174

Query: 107 -FEGLKNPYLVSCNAIVAGF-INNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
            F G+    +V+ N+++AGF ++   + + + L    +   + PN+ T++ V+       
Sbjct: 175 VFSGMPYRDVVAWNSMIAGFSLHRVCYNETIQLLAQMQKDLVRPNSSTIVAVLPAVAQAN 234

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME-CKDVISWTRMM 223
           + +  + +HG  ++ G I DV V   +LDMY     +  A   F  M   ++ ++W+ M+
Sbjct: 235 ALSHGKALHGFCVRRGYIDDVVVATGLLDMYGKCQCIIYARNFFDMMSIVRNEVTWSAML 294

Query: 224 GLFVDFEYAGDALKIFREMRKSRIIC----DTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           G +V  E   +AL +F+ M + +         V L  ++   A L D+ RG+ +H   + 
Sbjct: 295 GAYVMCELMREALDLFQYMMRIKDAAVKSPTEVTLATVLRACAELTDVSRGRCIHCYTIK 354

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G  S+L L N++++ Y+KCG +  +   F+++  K  VS++AIISG +QNG A+EAL+ 
Sbjct: 355 SGFISDLMLGNTLLSTYAKCGTVSDAIRYFHEMELKDEVSYSAIISGCMQNGNAKEALSM 414

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           F +MR    D  +  T+V IL A   LAAL+     H  A   GF    ++ N LI  Y+
Sbjct: 415 FHRMRLSGMDP-ELATMVGILPACAHLAALQHGSCCHSYALIKGFTSEITICNALIDMYA 473

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           KCG +D A  VF+ M   RD+VSWN +I  YG +G G  AL L+  M   G  PD  T++
Sbjct: 474 KCGRIDTARNVFDRM-HKRDIVSWNAMIIAYGNHGLGMEALLLFDNMLADGLEPDDVTFI 532

Query: 460 SILNACGHAGLTND 473
            +L+AC H+GL  +
Sbjct: 533 CLLSACSHSGLVKE 546



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 114/391 (29%), Positives = 204/391 (52%), Gaps = 30/391 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGF-HEKSMKAFSHM 62
           D Y S+ ++  Y K G + +AE +F  +P ++VV+W+ +I G+S++   + ++++  + M
Sbjct: 152 DVYVSTAVVDMYAKCGCLDDAEMVFSGMPYRDVVAWNSMIAGFSLHRVCYNETIQLLAQM 211

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY------ 114
               + PNS T+V VL A A    L   +++HG  V+ G   D+    GL + Y      
Sbjct: 212 QKDLVRPNSSTIVAVLPAVAQANALSHGKALHGFCVRRGYIDDVVVATGLLDMYGKCQCI 271

Query: 115 ---------------LVSCNAIVAGFINNKLFQQAVLLFNFF----RGSGLVPNAVTMLT 155
                           V+ +A++  ++  +L ++A+ LF +       +   P  VT+ T
Sbjct: 272 IYARNFFDMMSIVRNEVTWSAMLGAYVMCELMREALDLFQYMMRIKDAAVKSPTEVTLAT 331

Query: 156 VIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKD 215
           V+R C  L   +    IH  TIK G I D+ + N++L  Y+    +  AI+ F EME KD
Sbjct: 332 VLRACAELTDVSRGRCIHCYTIKSGFISDLMLGNTLLSTYAKCGTVSDAIRYFHEMELKD 391

Query: 216 VISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
            +S++ ++   +    A +AL +F  MR S +  +   ++ ++   A L  L+ G   H+
Sbjct: 392 EVSYSAIISGCMQNGNAKEALSMFHRMRLSGMDPELATMVGILPACAHLAALQHGSCCHS 451

Query: 276 QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
             ++ G  SE+ + N++I MY+KCG +D++R+VF+++ ++ +VSW A+I  Y  +G   E
Sbjct: 452 YALIKGFTSEITICNALIDMYAKCGRIDTARNVFDRMHKRDIVSWNAMIIAYGNHGLGME 511

Query: 336 ALNQFIKMRQE--KTDSVDSITLVSILTASG 364
           AL  F  M  +  + D V  I L+S  + SG
Sbjct: 512 ALLLFDNMLADGLEPDDVTFICLLSACSHSG 542



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 106/361 (29%), Positives = 186/361 (51%), Gaps = 6/361 (1%)

Query: 119 NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIK 178
           N ++  +  N  F +A+ L+      G+ P+  T   V++ C AL +    + IH    +
Sbjct: 87  NMLIRAYAWNGPFTEAINLYYKMLELGIQPSKYTYPFVLKACSALQAIEEGKEIHIHAKR 146

Query: 179 LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYA-GDALK 237
           L L  DV V+ +V+DMY+    LD A  +F  M  +DV++W  M+  F        + ++
Sbjct: 147 LDLDSDVYVSTAVVDMYAKCGCLDDAEMVFSGMPYRDVVAWNSMIAGFSLHRVCYNETIQ 206

Query: 238 IFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYS 297
           +  +M+K  +  ++  ++ ++   A    L  GK LH   V  G   ++ ++  ++ MY 
Sbjct: 207 LLAQMQKDLVRPNSSTIVAVLPAVAQANALSHGKALHGFCVRRGYIDDVVVATGLLDMYG 266

Query: 298 KCGDLDSSRSVFNQIT-EKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDS--- 353
           KC  +  +R+ F+ ++  ++ V+W+A++  YV     REAL+ F  M + K  +V S   
Sbjct: 267 KCQCIIYARNFFDMMSIVRNEVTWSAMLGAYVMCELMREALDLFQYMMRIKDAAVKSPTE 326

Query: 354 ITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEE 413
           +TL ++L A  EL  +     +H    ++GF     + N L+S+Y+KCG V  A   F E
Sbjct: 327 VTLATVLRACAELTDVSRGRCIHCYTIKSGFISDLMLGNTLLSTYAKCGTVSDAIRYFHE 386

Query: 414 MGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTND 473
           M  L+D VS++ II G   NG+ + AL+++H+M  +G  P+ +T + IL AC H      
Sbjct: 387 ME-LKDEVSYSAIISGCMQNGNAKEALSMFHRMRLSGMDPELATMVGILPACAHLAALQH 445

Query: 474 G 474
           G
Sbjct: 446 G 446



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/335 (22%), Positives = 149/335 (44%), Gaps = 26/335 (7%)

Query: 214 KDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQL 273
           + V+ W  ++  +       +A+ ++ +M +  I         ++   + L  ++ GK++
Sbjct: 81  RKVVIWNMLIRAYAWNGPFTEAINLYYKMLELGIQPSKYTYPFVLKACSALQAIEEGKEI 140

Query: 274 HAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGY-VQNGC 332
           H       L S++ +S +++ MY+KCG LD +  VF+ +  + +V+W ++I+G+ +   C
Sbjct: 141 HIHAKRLDLDSDVYVSTAVVDMYAKCGCLDDAEMVFSGMPYRDVVAWNSMIAGFSLHRVC 200

Query: 333 AREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN 392
             E +    +M+++     +S T+V++L A  +  AL     LHG     G+     V  
Sbjct: 201 YNETIQLLAQMQKDLVRP-NSSTIVAVLPAVAQANALSHGKALHGFCVRRGYIDDVVVAT 259

Query: 393 CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV 452
            L+  Y KC  +  A   F+ M  +R+ V+W+ ++  Y +      AL L+  M    + 
Sbjct: 260 GLLDMYGKCQCIIYARNFFDMMSIVRNEVTWSAMLGAYVMCELMREALDLFQYMMRIKDA 319

Query: 453 ----PDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLL------- 501
               P   T  ++L AC      + G  I    I+           G + DL+       
Sbjct: 320 AVKSPTEVTLATVLRACAELTDVSRGRCIHCYTIKS----------GFISDLMLGNTLLS 369

Query: 502 --ARAGCLSDASGLAGKLLEGMGPNIWRALLSGCV 534
             A+ G +SDA     + +E      + A++SGC+
Sbjct: 370 TYAKCGTVSDAIRYFHE-MELKDEVSYSAIISGCM 403


>gi|14587213|dbj|BAB61147.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|125570436|gb|EAZ11951.1| hypothetical protein OsJ_01824 [Oryza sativa Japonica Group]
          Length = 735

 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 170/604 (28%), Positives = 294/604 (48%), Gaps = 65/604 (10%)

Query: 27  LFDEIPE--KNVVSWSIVIHGYSINGFHE-KSMKAFSHMMLSGLL---PNSFTMVGVLVA 80
           +FD+IP   ++V SW+ +++   ++G     ++  F  M+ S  +   P+SF       A
Sbjct: 71  VFDDIPPAARDVTSWNSLLN--PLSGHRPLDALSRFRSMLSSSTVLPSPHSFAAAFTAAA 128

Query: 81  ------------------AAGLQNLELARSIHGLMVKFGLESD---LFEGLKNPYLVSCN 119
                              + + N+ +  S+  +  K G+ SD   +F+G+      S +
Sbjct: 129 RAASAPAGTAAHALACKIPSAVSNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWS 188

Query: 120 AIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALC-ELIHGLTIK 178
            +VAG+   K  ++A  LF           +  + T +   V++    L  E +HGL +K
Sbjct: 189 TMVAGYAAEKCSEEAFDLFRLMLEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVK 248

Query: 179 LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKI 238
            GL+  VSV NS++ MY+    + AA  +F     ++ I+W+ M+  +     A  A+ +
Sbjct: 249 DGLLDFVSVENSLVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSM 308

Query: 239 FREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSK 298
           F +M  +         + +++ ++ LG L  GKQ H  +V  G + ++ + ++++ MY+K
Sbjct: 309 FSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAK 368

Query: 299 CGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVS 358
           CG +  ++  F+Q+ E  +V WTA++SG+VQNG   EAL  + +M +E      S T+ S
Sbjct: 369 CGCIADAKEGFDQLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKS-TIAS 427

Query: 359 ILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLR 418
            L A   +AALE   QLH    + G      V + L + YSKCGN++    VF  +   R
Sbjct: 428 GLRACAGIAALEPGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPD-R 486

Query: 419 DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIF 478
           DV++WN+II G+  NG G  AL L+ +M   G +PD+ T+++IL AC H GL + G   F
Sbjct: 487 DVIAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGWEYF 546

Query: 479 NQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGC----- 533
           + M ++  + P  +HY C+VD+L+RAG L +A      +    G  +WR +L  C     
Sbjct: 547 SLMTKDYGLTPRLDHYACMVDILSRAGMLKEAKDFIESITIDHGTCLWRIVLGACRSLRD 606

Query: 534 ----------VLHVG------------------RFQDAEALRSGSQKKGIIKIPGISFLN 565
                     ++ +G                  ++ D E +R   + +G+ K PG S++ 
Sbjct: 607 FDVGAYAGERLMELGTGDSSAYILLSNIYASQRKWNDVERVRHLMRLRGVNKDPGCSWVE 666

Query: 566 STSR 569
             SR
Sbjct: 667 LNSR 670



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 117/387 (30%), Positives = 196/387 (50%), Gaps = 30/387 (7%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y  + LL+ Y K G + +A  +FD +P++N  SWS ++ GY+     E++   F  M+  
Sbjct: 154 YVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLMLEE 213

Query: 66  GLLPNS-FTMVGVLVAAAGLQNLELARSIHGLMVKFGL------ESDL------------ 106
                S F    VL A +    L +   +HGL+VK GL      E+ L            
Sbjct: 214 CPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGA 273

Query: 107 ----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA 162
               FE  +    ++ +A++ G+  N     AV +F+    +G  P   T + V+     
Sbjct: 274 AFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSD 333

Query: 163 LGSRALCELIHGLTIKLGLILDVSVNNSVLDMYS---CLMDLDAAIQIFREMECKDVISW 219
           LG+ A+ +  HGL +KLG  + + V ++++DMY+   C+ D   A + F ++   D++ W
Sbjct: 334 LGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIAD---AKEGFDQLYEVDIVLW 390

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           T M+   V      +AL ++  M K  II     + + +   A +  L+ GKQLH Q+V 
Sbjct: 391 TAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIVK 450

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            GL     + +++  MYSKCG+L+   SVF +I ++ +++W +IISG+ QNGC   AL+ 
Sbjct: 451 YGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGNGALDL 510

Query: 340 FIKMRQEKTDSVDSITLVSILTASGEL 366
           F +M+ E T   D+IT ++IL A   +
Sbjct: 511 FEEMKMEGTIP-DNITFINILCACSHM 536



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 111/407 (27%), Positives = 192/407 (47%), Gaps = 19/407 (4%)

Query: 163 LGSRALC----ELIHGLTIKLGLILDVSVNNSVLDMYSCLMD--LDAAIQIFREME--CK 214
           L  RA C    E +H   +K G      V NS+++ YS L    L AA  +F ++    +
Sbjct: 21  LRRRASCPRHGEALHAWALKSGAASHAPVANSLINFYSSLPRPLLAAAFAVFDDIPPAAR 80

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREM-RKSRIICDTVALLNLISVNAILGDLKRGKQL 273
           DV SW  ++          DAL  FR M   S ++    +     +  A       G   
Sbjct: 81  DVTSWNSLLNPLSGHRPL-DALSRFRSMLSSSTVLPSPHSFAAAFTAAARAASAPAGTAA 139

Query: 274 HAQVV-LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC 332
           HA    +    S + +  S++ MY K G +  +R VF+ + +++  SW+ +++GY    C
Sbjct: 140 HALACKIPSAVSNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKC 199

Query: 333 AREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN 392
           + EA + F  M +E           ++L+A      L +  Q+HG+  + G   + SV+N
Sbjct: 200 SEEAFDLFRLMLEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVEN 259

Query: 393 CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV 452
            L++ Y+K G +  A+ VFE     R+ ++W+ +I GY  NG  ++A++++ +M   G  
Sbjct: 260 SLVTMYAKAGCMGAAFHVFES-SRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFT 318

Query: 453 PDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY--GCVVDLLARAGCLSDA 510
           P   T++ +LNA    G    G      M+   K+    + Y    +VD+ A+ GC++DA
Sbjct: 319 PTEFTFVGVLNASSDLGALAVGKQAHGLMV---KLGFEVQIYVKSALVDMYAKCGCIADA 375

Query: 511 SGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIK 557
                +L E +   +W A++SG V + G  ++A  L +   K+GII 
Sbjct: 376 KEGFDQLYE-VDIVLWTAMVSGHVQN-GEHEEALTLYARMDKEGIIP 420


>gi|449531466|ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like, partial [Cucumis sativus]
          Length = 610

 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 155/542 (28%), Positives = 258/542 (47%), Gaps = 57/542 (10%)

Query: 57  KAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLV 116
           K  + ++  G   N +    V+ +  GL+ +  AR              LF+   +P + 
Sbjct: 43  KVQAQIITHGFQYNGYVAPNVVTSWVGLKQMAHARH-------------LFDHFPDPKVE 89

Query: 117 SCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLT 176
             NAI  G+ +N  +++ V LF   +   + PN  T   V++ C  +G+    E IH   
Sbjct: 90  LWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEGEEIHCEV 149

Query: 177 IKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDAL 236
           IK GL  +  V  +++D+YS    + +A ++F  M  +++++WT M+  ++       A 
Sbjct: 150 IKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYILCNRVALAR 209

Query: 237 KIFREMRKSRIICDTVALLNLISVNAI-LGDLKRGKQLHAQVVLGGLQSELRLSNSIIAM 295
           ++F ++   R     V L N++    I +GD+K  ++L   +      S     N+++  
Sbjct: 210 RLF-DLAPER----DVVLWNIMVSGYIEIGDMKAARKLFDTMPYRDTMS----WNTMLNG 260

Query: 296 YSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSIT 355
           Y+  GD+++   +F ++ E+++ SW  +I GY  NGC  E L  F +M  +     +  T
Sbjct: 261 YANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDAT 320

Query: 356 LVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMG 415
           LV++L+A   L AL++   +H  A   GF     V N LI  YSKCG ++ A  VFE M 
Sbjct: 321 LVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFESMD 380

Query: 416 FLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGL 475
            L+D+++WN++I G   +G G  AL L+H+M   GE PD  T++ +L +C H GL  +G 
Sbjct: 381 -LKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEGT 439

Query: 476 VIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVL 535
             FN M+ E  + P  EHYGC+VDL  RAG L  A     ++       IW ALL  C +
Sbjct: 440 SYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALLGACRI 499

Query: 536 H---------------------------------VGRFQDAEALRSGSQKKGIIKIPGIS 562
           +                                 +GR++D   L+   +  G  K+PG S
Sbjct: 500 YKNIDLAELALQKLIVLEPKNPANYVLLSNIYGDLGRWKDVARLKILMRDTGSKKLPGCS 559

Query: 563 FL 564
            +
Sbjct: 560 LI 561



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 106/449 (23%), Positives = 200/449 (44%), Gaps = 39/449 (8%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y +  +++++    ++  A +LFD  P+  V  W+ +  GY  N F+ + +  F  M   
Sbjct: 58  YVAPNVVTSWVGLKQMAHARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSM 117

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-------------------- 105
            + PN FT   VL + A +        IH  ++K GLE +                    
Sbjct: 118 DVRPNCFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSA 177

Query: 106 --LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTML--TVIRGCV 161
             LF G+    +V+  ++++G+I       A  LF+      L P    +L   ++ G +
Sbjct: 178 YKLFVGMLERNIVAWTSMISGYILCNRVALARRLFD------LAPERDVVLWNIMVSGYI 231

Query: 162 ALGS-RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
            +G  +A  +L   +  +     D    N++L+ Y+   D++A  Q+F EM  ++V SW 
Sbjct: 232 EIGDMKAARKLFDTMPYR-----DTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWN 286

Query: 221 RMMGLFVDFEYAGDALKIFREMR-KSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
            ++G +       + L+ F+ M     ++ +   L+ ++S  A LG L  GK +H     
Sbjct: 287 GLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAAT 346

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G +  + + N++I MYSKCG ++++  VF  +  K L++W ++I G   +GC  +AL  
Sbjct: 347 IGFKGSIYVGNALIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGLATHGCGADALTL 406

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQ-LHGIAFEAGFPRYRSVQNCLISSY 398
           F +M+    +  D IT + +L +   L  +E      + +  E           C++  +
Sbjct: 407 FHQMKI-NGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLF 465

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
            + G +D A    + M    D V W  ++
Sbjct: 466 GRAGLLDRAIEFVKRMPMEADAVIWAALL 494



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 145/310 (46%), Gaps = 53/310 (17%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  D  + + +L+ Y  +G ++  E LF+E+PE+NV SW+ +I GY+ NG   + ++ F 
Sbjct: 247 PYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFK 306

Query: 61  HMMLSGL-LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES--------------- 104
            M++ GL +PN  T+V VL A A L  L+L + +H      G +                
Sbjct: 307 RMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSKC 366

Query: 105 -------DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
                  ++FE +    L++ N+++ G   +     A+ LF+  + +G  P+ +T + V+
Sbjct: 367 GLIENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIGVL 426

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMD-------LDAAIQIFRE 210
             C  LG   L E   G +    ++ + S+   + + Y C++D       LD AI+  + 
Sbjct: 427 CSCTHLG---LVE--EGTSYFNSMVNEYSIAPQI-EHYGCMVDLFGRAGLLDRAIEFVKR 480

Query: 211 MECK-DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALL------NLISVNAI 263
           M  + D + W  ++G          A +I++ +  + +    + +L      N + ++ I
Sbjct: 481 MPMEADAVIWAALLG----------ACRIYKNIDLAELALQKLIVLEPKNPANYVLLSNI 530

Query: 264 LGDLKRGKQL 273
            GDL R K +
Sbjct: 531 YGDLGRWKDV 540



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 150/322 (46%), Gaps = 14/322 (4%)

Query: 154 LTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC 213
           ++++R C  +   AL + +    I  G   +  V  +V+  +  L  +  A  +F     
Sbjct: 29  ISLLRSCKTV---ALLQKVQAQIITHGFQYNGYVAPNVVTSWVGLKQMAHARHLFDHFPD 85

Query: 214 KDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQL 273
             V  W  +   +    +  + + +F +M+   +  +      ++   A +G    G+++
Sbjct: 86  PKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEGEEI 145

Query: 274 HAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA 333
           H +V+ GGL+    ++ ++I +YS    + S+  +F  + E+++V+WT++ISGY+   C 
Sbjct: 146 HCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYIL--CN 203

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC 393
           R AL + +     + D V    +VS     G++ A           F+    R     N 
Sbjct: 204 RVALARRLFDLAPERDVVLWNIMVSGYIEIGDMKAARKL-------FDTMPYRDTMSWNT 256

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG-EV 452
           +++ Y+  G+V+    +FEEM   R+V SWN +I GY  NG     L  + +M   G  V
Sbjct: 257 MLNGYANNGDVEACEQLFEEMP-ERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVV 315

Query: 453 PDSSTYLSILNACGHAGLTNDG 474
           P+ +T +++L+AC   G  + G
Sbjct: 316 PNDATLVTVLSACARLGALDLG 337


>gi|242062998|ref|XP_002452788.1| hypothetical protein SORBIDRAFT_04g032540 [Sorghum bicolor]
 gi|241932619|gb|EES05764.1| hypothetical protein SORBIDRAFT_04g032540 [Sorghum bicolor]
          Length = 662

 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 161/551 (29%), Positives = 275/551 (49%), Gaps = 32/551 (5%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWS-IVIHGYSINGFHEKSMKAFSHMMLSGLLP 69
           LL +Y   G+  +A NL  ++P+   VS S  ++  Y+  GF+ +++  +S M     L 
Sbjct: 51  LLGSYCACGRPFDAHNLLVQMPQPPPVSVSNTLLRSYTGLGFNRQALALYSQMRAFDHLT 110

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LF 107
            +F       A A L+     R++HG  +  G   D                      +F
Sbjct: 111 FTFAAK----ACADLRRRRHGRAVHGRALTAGFGGDGYVQNALVSMYMRCRDVVSAEAVF 166

Query: 108 EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRA 167
             L++   VS N ++ G + +   ++A+ +F    G G+  +  T+++V+  C       
Sbjct: 167 GALRSRTTVSWNTVITGCVKDGRAERALEVFETMVGRGVCIDRATVVSVLPACAQARDLH 226

Query: 168 LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC-KDVISWTRMMGLF 226
           +   +H L +  GL    +V N+++DMY     L+ A ++F E    KDV+SWT M+G +
Sbjct: 227 MGRAVHRLAVVRGLGNYAAVKNALIDMYGKCRSLEDAKRVFDEDSYDKDVVSWTAMIGAY 286

Query: 227 VDFEYAGDALKIFREMR-KSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           V  ++A  A  +  EM   S    + V +++L+S    L   K  K  HA  +  GL S+
Sbjct: 287 VLNDHASKAFALGSEMLVTSEAQPNAVTMVHLLSACTSLLSGKHAKCTHALCIRLGLGSD 346

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
             +  +++  Y+KCG +     V  + + ++  +W A ISGY      ++AL  F +M  
Sbjct: 347 TVVETALVDCYAKCGYMGMIDMVVEKGSRRT-ETWNAAISGYTHREQGKKALALFKQMLA 405

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
           E     DS T+ S++ A  E A L     +H      G      +   LI+ Y+K G++ 
Sbjct: 406 ESVRP-DSATMASVIPAYAESADLVQAKNIHCCLLIRGCLGSTDIATGLINVYAKAGDLG 464

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
           +A+ +F+ +   +DVV+W T+I GYG++GH +TA+ LY +M E G  P++ T  S++ +C
Sbjct: 465 VAWELFQCLPE-KDVVAWTTVIAGYGMHGHAQTAILLYSRMIEMGVTPNTVTMASLMYSC 523

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI 525
            HAG+ ++GL +FN M   + + P+ EHY C+VD+L RAG + +A  L   +      ++
Sbjct: 524 SHAGMVDEGLRLFNDMRGVHGLMPNAEHYLCLVDMLGRAGRIEEAYRLIQDMPFEPSTSV 583

Query: 526 WRALLSGCVLH 536
           W ALL  CVLH
Sbjct: 584 WSALLGACVLH 594



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 111/457 (24%), Positives = 210/457 (45%), Gaps = 43/457 (9%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + L+S Y +   +  AE +F  +  +  VSW+ VI G   +G  E++++ F  M+
Sbjct: 142 DGYVQNALVSMYMRCRDVVSAEAVFGALRSRTTVSWNTVITGCVKDGRAERALEVFETMV 201

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES---------DLF------- 107
             G+  +  T+V VL A A  ++L + R++H L V  GL +         D++       
Sbjct: 202 GRGVCIDRATVVSVLPACAQARDLHMGRAVHRLAVVRGLGNYAAVKNALIDMYGKCRSLE 261

Query: 108 -------EGLKNPYLVSCNAIVAGFINNKLFQQAVLL-FNFFRGSGLVPNAVTMLTVIRG 159
                  E   +  +VS  A++  ++ N    +A  L       S   PNAVTM+ ++  
Sbjct: 262 DAKRVFDEDSYDKDVVSWTAMIGAYVLNDHASKAFALGSEMLVTSEAQPNAVTMVHLLSA 321

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C +L S    +  H L I+LGL  D  V  +++D Y+    +   I +  E   +   +W
Sbjct: 322 CTSLLSGKHAKCTHALCIRLGLGSDTVVETALVDCYAKCGYM-GMIDMVVEKGSRRTETW 380

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
              +  +   E    AL +F++M    +  D+  + ++I   A   DL + K +H  +++
Sbjct: 381 NAAISGYTHREQGKKALALFKQMLAESVRPDSATMASVIPAYAESADLVQAKNIHCCLLI 440

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G      ++  +I +Y+K GDL  +  +F  + EK +V+WT +I+GY  +G A+ A+  
Sbjct: 441 RGCLGSTDIATGLINVYAKAGDLGVAWELFQCLPEKDVVAWTTVIAGYGMHGHAQTAILL 500

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN------- 392
           + +M  E   + +++T+ S++ +      ++  L+L        F   R V         
Sbjct: 501 YSRM-IEMGVTPNTVTMASLMYSCSHAGMVDEGLRL--------FNDMRGVHGLMPNAEH 551

Query: 393 --CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
             CL+    + G ++ AY + ++M F      W+ ++
Sbjct: 552 YLCLVDMLGRAGRIEEAYRLIQDMPFEPSTSVWSALL 588


>gi|449463559|ref|XP_004149501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
 gi|449511944|ref|XP_004164096.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
          Length = 566

 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 149/504 (29%), Positives = 245/504 (48%), Gaps = 59/504 (11%)

Query: 110 LKNPY----LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
            ++PY    + + NAI+AGF+ N L       +   R  G++P+  T   V+R C     
Sbjct: 33  FRDPYHERNVFAYNAIIAGFVANGLAADGFQFYKRMRSVGVMPDKFTFPCVVRAC----- 87

Query: 166 RALCEL-----IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
              CE      IHG   K+GL L+V V +++++ Y  +   + A ++F E+  +DV+ W 
Sbjct: 88  ---CEFMEVRKIHGCLFKMGLELNVFVGSALVNTYLKVDGTEDAEKVFEELPERDVVLWN 144

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+  +    +   A+ +F+ M +  I        +++S+   +GD+  G+ +H  V   
Sbjct: 145 AMINGYTKIGHLNKAVVVFKRMGEEGISLSRFTTTSILSILTSMGDINNGRAIHGIVTKM 204

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           G  S + +SN++I MY KC   + +  +F  I EK L SW +IIS + Q       L  F
Sbjct: 205 GYSSCVAVSNALIDMYGKCKHTEDALMIFEMINEKDLFSWNSIISAHEQCDDHDGTLRLF 264

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS-----VQNCLI 395
            KM   +    D IT+ ++L A   LAAL    ++HG     G  +  +     + N ++
Sbjct: 265 GKMLGSRVLP-DVITITAVLPACSHLAALMHGREIHGYMIVNGLGKNENGDDVLLNNAIM 323

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
             Y+KCG +  A I+F+ M   +DV SWN +I GY ++G+G  AL ++H+M E    PD 
Sbjct: 324 DMYAKCGCMKNADIIFDLMRN-KDVASWNIMIMGYAMHGYGTEALDMFHRMCEAQIKPDV 382

Query: 456 STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAG 515
            T++ +L+AC HAG  + G     +M  E  V P+ EHY C++D+L RAG L +A  LA 
Sbjct: 383 VTFVGVLSACSHAGFVHQGRSFLTRMELEFGVIPTIEHYTCIIDMLGRAGHLGEAYDLAQ 442

Query: 516 KLLEGMGPNIWRALLSGCVLH-----------------------------------VGRF 540
           ++       +W ALL  C LH                                   VGR+
Sbjct: 443 RIPLEDNLILWMALLGACRLHGNAELGNVVGEKITQLEPKHCGSGSYILMSSLYGVVGRY 502

Query: 541 QDAEALRSGSQKKGIIKIPGISFL 564
           ++A  +R   +++ + K PG S++
Sbjct: 503 EEALEVRRTMKEQNVKKTPGCSWI 526



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 123/514 (23%), Positives = 241/514 (46%), Gaps = 34/514 (6%)

Query: 5   PYNSSKLLSNYFKSGKIKEAENLF-DEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           P + + L++ Y +  +++EA  +F D   E+NV +++ +I G+  NG      + +  M 
Sbjct: 10  PSSITSLINMYSRCNQMEEAVLVFRDPYHERNVFAYNAIIAGFVANGLAADGFQFYKRMR 69

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPYL------ 115
             G++P+ FT   V+ A      +   R IHG + K GLE ++F G  L N YL      
Sbjct: 70  SVGVMPDKFTFPCVVRACCEFMEV---RKIHGCLFKMGLELNVFVGSALVNTYLKVDGTE 126

Query: 116 --------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                         V  NA++ G+       +AV++F      G+  +  T  +++    
Sbjct: 127 DAEKVFEELPERDVVLWNAMINGYTKIGHLNKAVVVFKRMGEEGISLSRFTTTSILSILT 186

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
           ++G       IHG+  K+G    V+V+N+++DMY      + A+ IF  +  KD+ SW  
Sbjct: 187 SMGDINNGRAIHGIVTKMGYSSCVAVSNALIDMYGKCKHTEDALMIFEMINEKDLFSWNS 246

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++      +     L++F +M  SR++ D + +  ++   + L  L  G+++H  +++ G
Sbjct: 247 IISAHEQCDDHDGTLRLFGKMLGSRVLPDVITITAVLPACSHLAALMHGREIHGYMIVNG 306

Query: 282 L-----QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
           L       ++ L+N+I+ MY+KCG + ++  +F+ +  K + SW  +I GY  +G   EA
Sbjct: 307 LGKNENGDDVLLNNAIMDMYAKCGCMKNADIIFDLMRNKDVASWNIMIMGYAMHGYGTEA 366

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQ-LHGIAFEAGFPRYRSVQNCLI 395
           L+ F +M + +    D +T V +L+A      +      L  +  E G         C+I
Sbjct: 367 LDMFHRMCEAQIKP-DVVTFVGVLSACSHAGFVHQGRSFLTRMELEFGVIPTIEHYTCII 425

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTE-TGEVPD 454
               + G++  AY + + +    +++ W  ++    ++G+ E    +  K+T+   +   
Sbjct: 426 DMLGRAGHLGEAYDLAQRIPLEDNLILWMALLGACRLHGNAELGNVVGEKITQLEPKHCG 485

Query: 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVK 488
           S +Y+ + +  G  G   + L +   M E+N  K
Sbjct: 486 SGSYILMSSLYGVVGRYEEALEVRRTMKEQNVKK 519



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 167/361 (46%), Gaps = 29/361 (8%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           ++ +  S L++ Y K    ++AE +F+E+PE++VV W+ +I+GY+  G   K++  F  M
Sbjct: 107 LNVFVGSALVNTYLKVDGTEDAEKVFEELPERDVVLWNAMINGYTKIGHLNKAVVVFKRM 166

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES------------------ 104
              G+  + FT   +L     + ++   R+IHG++ K G  S                  
Sbjct: 167 GEEGISLSRFTTTSILSILTSMGDINNGRAIHGIVTKMGYSSCVAVSNALIDMYGKCKHT 226

Query: 105 ----DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +FE +    L S N+I++           + LF    GS ++P+ +T+  V+  C
Sbjct: 227 EDALMIFEMINEKDLFSWNSIISAHEQCDDHDGTLRLFGKMLGSRVLPDVITITAVLPAC 286

Query: 161 VALGSRALCELIHGLTIKLGLIL-----DVSVNNSVLDMYSCLMDLDAAIQIFREMECKD 215
             L +      IHG  I  GL       DV +NN+++DMY+    +  A  IF  M  KD
Sbjct: 287 SHLAALMHGREIHGYMIVNGLGKNENGDDVLLNNAIMDMYAKCGCMKNADIIFDLMRNKD 346

Query: 216 VISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
           V SW  M+  +    Y  +AL +F  M +++I  D V  + ++S  +  G + +G+    
Sbjct: 347 VASWNIMIMGYAMHGYGTEALDMFHRMCEAQIKPDVVTFVGVLSACSHAGFVHQGRSFLT 406

Query: 276 QVVLG-GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISGYVQNGCA 333
           ++ L  G+   +     II M  + G L  +  +  +I  E +L+ W A++     +G A
Sbjct: 407 RMELEFGVIPTIEHYTCIIDMLGRAGHLGEAYDLAQRIPLEDNLILWMALLGACRLHGNA 466

Query: 334 R 334
            
Sbjct: 467 E 467



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 43/84 (51%)

Query: 382 AGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALA 441
           +GF    S    LI+ YS+C  ++ A +VF +    R+V ++N II G+  NG       
Sbjct: 4   SGFIHLPSSITSLINMYSRCNQMEEAVLVFRDPYHERNVFAYNAIIAGFVANGLAADGFQ 63

Query: 442 LYHKMTETGEVPDSSTYLSILNAC 465
            Y +M   G +PD  T+  ++ AC
Sbjct: 64  FYKRMRSVGVMPDKFTFPCVVRAC 87


>gi|226528958|ref|NP_001141436.1| uncharacterized protein LOC100273546 [Zea mays]
 gi|194704572|gb|ACF86370.1| unknown [Zea mays]
 gi|414877969|tpg|DAA55100.1| TPA: hypothetical protein ZEAMMB73_905907 [Zea mays]
          Length = 700

 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 192/676 (28%), Positives = 302/676 (44%), Gaps = 137/676 (20%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  +    + +LS   + G+I EA  LFD +P +N VSW+ +I   S +G    +   F 
Sbjct: 45  PLRNTVTYNAMLSALARHGRIDEARALFDGMPGRNTVSWNAMIAALSDHGRVADARSLFD 104

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMV-------------------KFG 101
            M +      S+T++    A  G  +LELAR +   M                    +F 
Sbjct: 105 RMPVRDEF--SWTVMVSCYARGG--DLELARDVLDRMPGDKCTACYNAMISGYAKNGRFD 160

Query: 102 LESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFN---------------FFRGSGL 146
               L   +  P LVS N+ +AG   +    +AV  F+               F R   L
Sbjct: 161 DAMKLLREMPAPDLVSWNSALAGLTQSGEMVRAVQFFDEMVKDMTSWNLMLAGFVRTGDL 220

Query: 147 -----------VPNAVTMLTVIRGCVALGSRALC-ELIHGLTIKLGLILDVSVNNSVLDM 194
                       PN ++ +T++ G    G  A   +L   +  +     +V   N +LD 
Sbjct: 221 NAASSFFAKIESPNVISWVTLLNGYCRAGRIADARDLFDRMPER-----NVVAWNVMLDG 275

Query: 195 YSCLMDLDAAIQIFREMECKDVISWTR-------------------------------MM 223
           Y  L  ++ A ++F EM  K+ ISWT                                +M
Sbjct: 276 YVHLSPIEEACKLFDEMPIKNSISWTTIISGLARAGKLQEAKDLLDKMSFNCVAAKTALM 335

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
             ++    A DA +IF  M     + DTV    +IS     G L+    L  ++      
Sbjct: 336 HGYLQRNMADDARRIFDGME----VHDTVCWNTMISGYVQCGILEEAMLLFQRMP----N 387

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
            ++   N++IA Y++ G +  +  +F ++  ++ VSW ++ISG+VQN    +AL+ F+ M
Sbjct: 388 KDMVSWNTMIAGYAQDGQMHKAIGIFRRMNRRNTVSWNSVISGFVQNDRFVDALHHFMLM 447

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
           R+  T+  D  T  S L A   LA L +  QLH +   +G        N LIS+Y+KCG 
Sbjct: 448 RR-GTNRADWSTYASCLRACANLAVLHVGRQLHNLLVRSGHINDSFAGNALISTYAKCGR 506

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           +  A  +F+EM + +D+VSWN +I GY  NG G  A+A++ +M   G  PD  T++ IL+
Sbjct: 507 ILEAKQIFDEMVY-KDIVSWNALIDGYASNGQGTEAIAVFREMEANGVRPDEVTFVGILS 565

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM-- 521
           AC HAGL ++GL  F  M +E  +KP  EHY C+VDLL RAG L++A     +L++GM  
Sbjct: 566 ACSHAGLIDEGLFFFYSMTKEYLLKPVAEHYACMVDLLGRAGKLNEAF----ELVQGMQI 621

Query: 522 GPN--IWRALLSGCVLH---------------------------------VGRFQDAEAL 546
            PN  +W ALL  C +H                                  G++ ++E  
Sbjct: 622 QPNAGVWGALLGACHMHKNHELAQLAAERLSELEPRKASNYVLLSNISAEAGKWDESEKA 681

Query: 547 RSGSQKKGIIKIPGIS 562
           R+  ++KG+ K PG++
Sbjct: 682 RASIKEKGVNKPPGLA 697


>gi|302785287|ref|XP_002974415.1| hypothetical protein SELMODRAFT_462 [Selaginella moellendorffii]
 gi|300158013|gb|EFJ24637.1| hypothetical protein SELMODRAFT_462 [Selaginella moellendorffii]
          Length = 659

 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 162/579 (27%), Positives = 279/579 (48%), Gaps = 46/579 (7%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + LL+ + +SG +  A+  F  I  K++++W+ +I   S +    +++  F  M L G+ 
Sbjct: 75  TALLTTFARSGSLDRAKAAFTAIARKDLIAWNAIITATSHSNRSHEALDLFRRMQLDGIH 134

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES-----------------DL----- 106
           PN+ T+V VL  +   ++   AR++H L ++  ++                  DL     
Sbjct: 135 PNAITLVAVL--SIFQESSTDARAVHSLAMESAMDESSVAVGNSIVNMYARCRDLDRARL 192

Query: 107 -FEGLKNPYLVSCNAIVAGFIN-NKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
            F  +++  +VS N +++     ++L   A  +F+     G+  +A T + +  G  A  
Sbjct: 193 AFARIQSKNVVSWNVMISAHSQLDRLHPLA--MFHAMMLEGIKADATTFVNLASGLAAPS 250

Query: 165 SRALCELIHGLTIKLG----LILDVSVNNSVLDMYSCLMDLDAAIQIFRE-MEC--KDVI 217
                EL+H    +LG    LI D  +  S++ M++    +  A  IF E   C  ++ +
Sbjct: 251 PLRDGELLHRCARELGGGRTLIYDAVLATSLVTMFAKCGSVAHARDIFHENFHCHERNPV 310

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
            W  ++   V      DAL +FR M+   +  D +  ++ I     L D   G+ LH  +
Sbjct: 311 VWNAIIAALVQNHDFSDALLLFRTMQLQGVPSDAITFVSTIDACTALEDFSTGRALHGII 370

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
               L+++  ++ +++  YSK   LD++ + F +I E  LV+W  +I+ +V N  +  AL
Sbjct: 371 SESSLETDTIVATALVNFYSKSRRLDAATAAFQRIPEPDLVAWNVLIAAHVDNADSSTAL 430

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
             F    + K D    IT ++ L A    +AL +  +LH    + G      V + L+  
Sbjct: 431 EIFFHRMELKPDR---ITFITTLAACVTASALPLGRRLHEQIRQRGLHSDVIVASALVDM 487

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           YSKCG+++ AY VF  M   R+  +WN +I G+  +G    A +L  +M   G  PDS T
Sbjct: 488 YSKCGSLEEAYKVFSTMAGRRNSATWNALIAGHAQHGFSGRAPSLVREMQLEGVEPDSLT 547

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDAS----GL 513
           Y+ +L AC HAGL  DG   F  ++E+ ++   +EHYGCVVDLL RAG L++A     GL
Sbjct: 548 YVGLLLACSHAGLLEDGCKFFAALVEDKRLAVKEEHYGCVVDLLGRAGKLAEAEEFLLGL 607

Query: 514 AGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQK 552
              +       +W +LLS C +H     D E  R  +++
Sbjct: 608 RRAMPVAASAAMWTSLLSACGVH----GDMELARRAARR 642



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 141/532 (26%), Positives = 237/532 (44%), Gaps = 40/532 (7%)

Query: 36  VVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHG 95
           V  ++ +I  Y+ +     +      M   G+ PN  T+V +L A   L ++ L   IH 
Sbjct: 1   VAMYTALIGAYARSNDPSAAFTLLRQMQADGIPPNRITLVEILSACTALHSIHLGDRIHQ 60

Query: 96  LMVKFGLESD----------------------LFEGLKNPYLVSCNAIVAGFINNKLFQQ 133
            ++  GL  D                       F  +    L++ NAI+    ++    +
Sbjct: 61  WIIDLGLHRDSVLGTALLTTFARSGSLDRAKAAFTAIARKDLIAWNAIITATSHSNRSHE 120

Query: 134 AVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLI-LDVSVNNSVL 192
           A+ LF   +  G+ PNA+T++ V+   +   S      +H L ++  +    V+V NS++
Sbjct: 121 ALDLFRRMQLDGIHPNAITLVAVL--SIFQESSTDARAVHSLAMESAMDESSVAVGNSIV 178

Query: 193 DMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTV 252
           +MY+   DLD A   F  ++ K+V+SW  M+      +     L +F  M    I  D  
Sbjct: 179 NMYARCRDLDRARLAFARIQSKNVVSWNVMISAHSQLDRL-HPLAMFHAMMLEGIKADAT 237

Query: 253 ALLNLISVNAILGDLKRGKQLH--AQVVLGG--LQSELRLSNSIIAMYSKCGDLDSSRSV 308
             +NL S  A    L+ G+ LH  A+ + GG  L  +  L+ S++ M++KCG +  +R +
Sbjct: 238 TFVNLASGLAAPSPLRDGELLHRCARELGGGRTLIYDAVLATSLVTMFAKCGSVAHARDI 297

Query: 309 FNQ---ITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGE 365
           F++     E++ V W AII+  VQN    +AL  F  M+ +   S D+IT VS + A   
Sbjct: 298 FHENFHCHERNPVVWNAIIAALVQNHDFSDALLLFRTMQLQGVPS-DAITFVSTIDACTA 356

Query: 366 LAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNT 425
           L        LHGI  E+       V   L++ YSK   +D A   F+ +    D+V+WN 
Sbjct: 357 LEDFSTGRALHGIISESSLETDTIVATALVNFYSKSRRLDAATAAFQRIP-EPDLVAWNV 415

Query: 426 IIYGYGVNGHGETALAL-YHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEE 484
           +I  +  N    TAL + +H+M      PD  T+++ L AC  A     G  +  Q I +
Sbjct: 416 LIAAHVDNADSSTALEIFFHRMELK---PDRITFITTLAACVTASALPLGRRLHEQ-IRQ 471

Query: 485 NKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
             +         +VD+ ++ G L +A  +   +        W AL++G   H
Sbjct: 472 RGLHSDVIVASALVDMYSKCGSLEEAYKVFSTMAGRRNSATWNALIAGHAQH 523


>gi|125525985|gb|EAY74099.1| hypothetical protein OsI_01984 [Oryza sativa Indica Group]
          Length = 735

 Score =  233 bits (593), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 170/603 (28%), Positives = 294/603 (48%), Gaps = 63/603 (10%)

Query: 27  LFDEIPE--KNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL---PNSFTMVGVLVA- 80
           +FD+IP   ++V SW+ +++  S +   + ++  F  M+ S  +   P+SF       A 
Sbjct: 71  VFDDIPPAARDVASWNSLLNPLSRHRPLD-ALSRFRSMLSSSTVLPSPHSFAAAFTAAAR 129

Query: 81  -----------------AAGLQNLELARSIHGLMVKFGLESD---LFEGLKNPYLVSCNA 120
                             + + N+ +  S+  +  K G+ SD   +F+G+      S + 
Sbjct: 130 AASAPAGTAAHALACKIPSAVSNVYVCTSLLNMYCKLGIVSDARRMFDGMPQRNSFSWST 189

Query: 121 IVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALC-ELIHGLTIKL 179
           +VAG+   K  ++A  LF           +  + T +   V++    L  E +HGL +K 
Sbjct: 190 MVAGYAAEKCSEEAFDLFRLMLEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKD 249

Query: 180 GLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIF 239
           GL+  VSV NS++ MY+    + AA  +F     ++ I+W+ M+  +     A  A+ +F
Sbjct: 250 GLLDFVSVENSLVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMF 309

Query: 240 REMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKC 299
            +M  +         + +++ ++ LG L  GKQ H  +V  G + ++ + ++++ MY+KC
Sbjct: 310 SQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKC 369

Query: 300 GDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSI 359
           G +  ++  F+Q+ E  +V WTA++SG+VQNG   EAL  + +M +E      S T+ S 
Sbjct: 370 GCIADAKEGFDQLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKS-TIASG 428

Query: 360 LTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRD 419
           L A   +AALE   QLH    + G      V + L + YSKCGN++    VF  +   RD
Sbjct: 429 LRACAGIAALEPGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPD-RD 487

Query: 420 VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFN 479
           V++WN+II G+  NG G  AL L+ +M   G +PD+ T+++IL AC H GL + G   F+
Sbjct: 488 VIAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGWEYFS 547

Query: 480 QMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGC------ 533
            M ++  + P  +HY C+VD+L+RAG L +A      +    G  +WR +L  C      
Sbjct: 548 LMTKDYGLTPRLDHYACMVDILSRAGMLKEAKDFIESITIDHGTCLWRIVLGACRSLRDF 607

Query: 534 ---------VLHVG------------------RFQDAEALRSGSQKKGIIKIPGISFLNS 566
                    ++ +G                  ++ D E +R   + +G+ K PG S++  
Sbjct: 608 DVGAYAGERLMELGTRDSSAYILLSNIYASQRKWNDVERVRHLMRLRGVNKDPGCSWVEL 667

Query: 567 TSR 569
            SR
Sbjct: 668 NSR 670



 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 117/387 (30%), Positives = 196/387 (50%), Gaps = 30/387 (7%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y  + LL+ Y K G + +A  +FD +P++N  SWS ++ GY+     E++   F  M+  
Sbjct: 154 YVCTSLLNMYCKLGIVSDARRMFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLMLEE 213

Query: 66  GLLPNS-FTMVGVLVAAAGLQNLELARSIHGLMVKFGL------ESDL------------ 106
                S F    VL A +    L +   +HGL+VK GL      E+ L            
Sbjct: 214 CPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGA 273

Query: 107 ----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA 162
               FE  +    ++ +A++ G+  N     AV +F+    +G  P   T + V+     
Sbjct: 274 AFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSD 333

Query: 163 LGSRALCELIHGLTIKLGLILDVSVNNSVLDMYS---CLMDLDAAIQIFREMECKDVISW 219
           LG+ A+ +  HGL +KLG  + + V ++++DMY+   C+ D   A + F ++   D++ W
Sbjct: 334 LGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIAD---AKEGFDQLYEVDIVLW 390

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           T M+   V      +AL ++  M K  II     + + +   A +  L+ GKQLH Q+V 
Sbjct: 391 TAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIVK 450

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            GL     + +++  MYSKCG+L+   SVF +I ++ +++W +IISG+ QNGC   AL+ 
Sbjct: 451 YGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGNGALDL 510

Query: 340 FIKMRQEKTDSVDSITLVSILTASGEL 366
           F +M+ E T   D+IT ++IL A   +
Sbjct: 511 FEEMKMEGTIP-DNITFINILCACSHM 536



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 110/406 (27%), Positives = 192/406 (47%), Gaps = 19/406 (4%)

Query: 163 LGSRALC----ELIHGLTIKLGLILDVSVNNSVLDMYSCLMD--LDAAIQIFREME--CK 214
           L  RA C    E +H   +K G      V NS+++ YS L    L AA  +F ++    +
Sbjct: 21  LRRRASCPRHGEALHAWALKSGAASHAPVANSLINFYSSLPRPLLAAAFAVFDDIPPAAR 80

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREM-RKSRIICDTVALLNLISVNAILGDLKRGKQL 273
           DV SW  ++          DAL  FR M   S ++    +     +  A       G   
Sbjct: 81  DVASWNSLLNPLSRHRPL-DALSRFRSMLSSSTVLPSPHSFAAAFTAAARAASAPAGTAA 139

Query: 274 HAQVV-LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC 332
           HA    +    S + +  S++ MY K G +  +R +F+ + +++  SW+ +++GY    C
Sbjct: 140 HALACKIPSAVSNVYVCTSLLNMYCKLGIVSDARRMFDGMPQRNSFSWSTMVAGYAAEKC 199

Query: 333 AREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN 392
           + EA + F  M +E           ++L+A      L +  Q+HG+  + G   + SV+N
Sbjct: 200 SEEAFDLFRLMLEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVEN 259

Query: 393 CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV 452
            L++ Y+K G +  A+ VFE     R+ ++W+ +I GY  NG  ++A++++ +M   G  
Sbjct: 260 SLVTMYAKAGCMGAAFHVFES-SRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFT 318

Query: 453 PDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY--GCVVDLLARAGCLSDA 510
           P   T++ +LNA    G    G      M+   K+    + Y    +VD+ A+ GC++DA
Sbjct: 319 PTEFTFVGVLNASSDLGALAVGKQAHGLMV---KLGFEVQIYVKSALVDMYAKCGCIADA 375

Query: 511 SGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGII 556
                +L E +   +W A++SG V + G  ++A  L +   K+GII
Sbjct: 376 KEGFDQLYE-VDIVLWTAMVSGHVQN-GEHEEALTLYARMDKEGII 419


>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  233 bits (593), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 154/554 (27%), Positives = 266/554 (48%), Gaps = 34/554 (6%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + L+  Y K+   ++   +FDE+  KNVVSW+ ++ GY+ NG +++ +   + M + G+ 
Sbjct: 143 TSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVN 202

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPYL----------- 115
           PN FT   VL A A    +E    +H ++VK G E   F    L   YL           
Sbjct: 203 PNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAV 262

Query: 116 ---------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
                    V+ N ++ G+     + +   +F+  R +G+  +     T ++ C      
Sbjct: 263 FDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQREL 322

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC-KDVISWTRMMGL 225
              + +H   +K G      +  +++  YS    +D A ++F   +   +V++WT M+G 
Sbjct: 323 NFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGG 382

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG--KQLHAQVVLGGLQ 283
           FV       A+ +F +M +  +        N  + + +L         QLHAQ++    +
Sbjct: 383 FVQNNNNKKAVDLFCQMSREGV------RPNHFTYSTVLAGKPSSLLSQLHAQIIKAYYE 436

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
               ++ +++  Y K G++  S  VF  I  K +V+W+A+++G  Q   + +A+  FI++
Sbjct: 437 KVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQL 496

Query: 344 RQEKTDSVDSITLVSILTA-SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
            +E     +  T  S++ A S   A +E   Q+H  A ++G      V + L++ YSK G
Sbjct: 497 VKEGVKP-NEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKG 555

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
           N++ A  VF      RD+VSWN++I GYG +G  + AL ++  M   G   D  T++ +L
Sbjct: 556 NIESAEKVFTRQE-ERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVL 614

Query: 463 NACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMG 522
            AC HAGL  +G   FN MI++  +    EHY C+VDL +RAG    A  +   +     
Sbjct: 615 TACTHAGLVEEGEKYFNIMIKDYHIDKKXEHYSCMVDLYSRAGMFDKAMDIINGMPFPAS 674

Query: 523 PNIWRALLSGCVLH 536
           P IWR LL+ C +H
Sbjct: 675 PTIWRTLLAACRVH 688



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 125/510 (24%), Positives = 236/510 (46%), Gaps = 43/510 (8%)

Query: 20  KIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLV 79
           + + A  LFDE P K++  ++ ++  +S N    +++  F  +  SGL  +  T+   L 
Sbjct: 53  RPRYAHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALK 112

Query: 80  AAAGLQNLELARSIHGLMVKFGLESDL---------------FE---------GLKNPYL 115
               L +  + R +H   +K G   D+               FE         G+KN  +
Sbjct: 113 VCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKN--V 170

Query: 116 VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCE---LI 172
           VS  ++++G+  N L  + + L N  +  G+ PN  T  TV+    AL   ++ E    +
Sbjct: 171 VSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLG---ALADESIIEGGVQV 227

Query: 173 HGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYA 232
           H + +K G      V N+++ MY     +  A  +F  M  +D ++W  M+G +    + 
Sbjct: 228 HAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFY 287

Query: 233 GDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSI 292
            +  ++F  MR + +          + + +   +L   KQLH  VV  G +    +  ++
Sbjct: 288 LEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTAL 347

Query: 293 IAMYSKCGDLDSSRSVFNQI-TEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
           +  YSKC  +D +  +F+      ++V+WTA+I G+VQN   ++A++ F +M +E     
Sbjct: 348 MVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRP- 406

Query: 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVF 411
           +  T  ++L  +G+ ++L    QLH    +A + +  SV   L+ +Y K GNV  +  VF
Sbjct: 407 NHFTYSTVL--AGKPSSL--LSQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVF 462

Query: 412 EEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLT 471
             +   +D+V+W+ ++ G       E A+ ++ ++ + G  P+  T+ S++NAC  +  T
Sbjct: 463 YSIP-AKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAAT 521

Query: 472 NDGLVIFNQMIEENKVKPSQEHYGCVVDLL 501
               V   + I    VK  + +  CV   L
Sbjct: 522 ----VEHGKQIHATAVKSGKSNALCVSSAL 547



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 105/227 (46%), Gaps = 29/227 (12%)

Query: 5   PYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML 64
           P  ++ LL  Y K+G + E+  +F  IP K++V+WS ++ G +     EK+M+ F  ++ 
Sbjct: 439 PSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVK 498

Query: 65  SGLLPNSFTMVGVLVA-AAGLQNLELARSIHGLMVKFG--------------------LE 103
            G+ PN +T   V+ A ++    +E  + IH   VK G                    +E
Sbjct: 499 EGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIE 558

Query: 104 S--DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
           S   +F   +   +VS N+++ G+  +   ++A+ +F   +  GL  + VT + V+  C 
Sbjct: 559 SAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACT 618

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIF 208
             G     E    + IK     D  ++    + YSC++DL +   +F
Sbjct: 619 HAGLVEEGEKYFNIMIK-----DYHIDKKX-EHYSCMVDLYSRAGMF 659


>gi|449482566|ref|XP_004156326.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g03800-like [Cucumis sativus]
          Length = 908

 Score =  233 bits (593), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 156/591 (26%), Positives = 284/591 (48%), Gaps = 65/591 (10%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L+S Y K G +++A+ +F  +   NVVS++ +I G+S + + +++++ F  M+
Sbjct: 129 DIFLGNALISAYLKLGLVRDADKVFSGLSCPNVVSYTALISGFSKSDWEDEAVELFFAML 188

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES------------------- 104
            SG+ PN +T V +L A     + +L   +HG++VK GL S                   
Sbjct: 189 DSGIEPNEYTFVAILTACIRNMDYQLGSQVHGIVVKLGLLSCVFICNALMGLYCKCGFLD 248

Query: 105 ---DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRG----SGLVPNAVTMLTVI 157
               LFE +    + S N +++  +    + +A   F++FRG     GL  +  ++ T++
Sbjct: 249 LVLRLFEEMPERDITSWNTVISSLVKEFKYDEA---FDYFRGMQLCKGLKVDHFSLSTLL 305

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
             C         + +H L +K+GL   +SV++S++  Y+     +    +F  M  +DVI
Sbjct: 306 TACAGSVKPMKGQQLHALALKVGLESHLSVSSSLIGFYTKCGSANDVTDLFETMPIRDVI 365

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIIC---------------------------- 249
           +WT M+  +++F     A+++F +M K   I                             
Sbjct: 366 TWTGMITSYMEFGMLDSAVEVFNKMPKRNCISYNAVLAGLSRNDDGSRALELFIEMLEEG 425

Query: 250 ---DTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSR 306
                  L ++I+   +L   K  +Q+   V+  G+ S   +  +++ MY++CG ++ + 
Sbjct: 426 VEISDCTLTSIITACGLLKSFKVSQQIQGFVMKFGILSNSCIETALVDMYTRCGRMEDAE 485

Query: 307 SVFNQ--ITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASG 364
            +F Q  +        T++I GY +NG   EA++ F   + E    +D +   SIL+  G
Sbjct: 486 KIFYQRSLENDYTAMLTSMICGYARNGKLNEAISLFHSGQSEGAIVMDEVMSTSILSLCG 545

Query: 365 ELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWN 424
            +   E+ +Q+H  A ++G      V N  +S YSKC N+D A  VF  M  ++D+VSWN
Sbjct: 546 SIGFHEMGMQMHCHALKSGLITETGVGNATVSMYSKCWNMDDAVRVFNTMN-MQDIVSWN 604

Query: 425 TIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA--GLTNDGLVIFNQMI 482
            ++ G+ ++  G+ AL ++ KM + G  PDS T+  I++A  H    L +    +F  M 
Sbjct: 605 GLVAGHVLHWQGDKALGIWKKMEKAGIKPDSITFALIISAYKHTELNLVDSCRSLFVSME 664

Query: 483 EENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGC 533
            E+ +KP+ EHY   + +L R G L +A      +       +WRALL+ C
Sbjct: 665 TEHNIKPTLEHYASFISVLGRWGLLEEAEQTIRNMPLEPDVYVWRALLNSC 715



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 122/429 (28%), Positives = 212/429 (49%), Gaps = 40/429 (9%)

Query: 85  QNLELARSIHGLMVKFGLESD---LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFF 141
           +++ L  ++    +K GL  D   +F GL  P +VS  A+++GF  +    +AV LF   
Sbjct: 128 EDIFLGNALISAYLKLGLVRDADKVFSGLSCPNVVSYTALISGFSKSDWEDEAVELFFAM 187

Query: 142 RGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDL 201
             SG+ PN  T + ++  C+      L   +HG+ +KLGL+  V + N+++ +Y     L
Sbjct: 188 LDSGIEPNEYTFVAILTACIRNMDYQLGSQVHGIVVKLGLLSCVFICNALMGLYCKCGFL 247

Query: 202 DAAIQIFREMECKDVISW-TRMMGLFVDFEYAGDALKIFREMRKSR-IICDTVALLNLIS 259
           D  +++F EM  +D+ SW T +  L  +F+Y  +A   FR M+  + +  D  +L  L++
Sbjct: 248 DLVLRLFEEMPERDITSWNTVISSLVKEFKY-DEAFDYFRGMQLCKGLKVDHFSLSTLLT 306

Query: 260 VNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGD------------------ 301
             A      +G+QLHA  +  GL+S L +S+S+I  Y+KCG                   
Sbjct: 307 ACAGSVKPMKGQQLHALALKVGLESHLSVSSSLIGFYTKCGSANDVTDLFETMPIRDVIT 366

Query: 302 -------------LDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
                        LDS+  VFN++ +++ +S+ A+++G  +N     AL  FI+M +E  
Sbjct: 367 WTGMITSYMEFGMLDSAVEVFNKMPKRNCISYNAVLAGLSRNDDGSRALELFIEMLEEGV 426

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
           + +   TL SI+TA G L + ++  Q+ G   + G      ++  L+  Y++CG ++ A 
Sbjct: 427 E-ISDCTLTSIITACGLLKSFKVSQQIQGFVMKFGILSNSCIETALVDMYTRCGRMEDAE 485

Query: 409 IVFEEMGFLRDVVSW-NTIIYGYGVNGHGETALALYHK-MTETGEVPDSSTYLSILNACG 466
            +F +     D  +   ++I GY  NG    A++L+H   +E   V D     SIL+ CG
Sbjct: 486 KIFYQRSLENDYTAMLTSMICGYARNGKLNEAISLFHSGQSEGAIVMDEVMSTSILSLCG 545

Query: 467 HAGLTNDGL 475
             G    G+
Sbjct: 546 SIGFHEMGM 554



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 117/484 (24%), Positives = 213/484 (44%), Gaps = 63/484 (13%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML-SGLLP 69
           L+  Y K G +     LF+E+PE+++ SW+ VI        ++++   F  M L  GL  
Sbjct: 237 LMGLYCKCGFLDLVLRLFEEMPERDITSWNTVISSLVKEFKYDEAFDYFRGMQLCKGLKV 296

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES----------------------DLF 107
           + F++  +L A AG       + +H L +K GLES                      DLF
Sbjct: 297 DHFSLSTLLTACAGSVKPMKGQQLHALALKVGLESHLSVSSSLIGFYTKCGSANDVTDLF 356

Query: 108 E-----------GLKNPYL--------------------VSCNAIVAGFINNKLFQQAVL 136
           E           G+   Y+                    +S NA++AG   N    +A+ 
Sbjct: 357 ETMPIRDVITWTGMITSYMEFGMLDSAVEVFNKMPKRNCISYNAVLAGLSRNDDGSRALE 416

Query: 137 LFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYS 196
           LF      G+  +  T+ ++I  C  L S  + + I G  +K G++ +  +  +++DMY+
Sbjct: 417 LFIEMLEEGVEISDCTLTSIITACGLLKSFKVSQQIQGFVMKFGILSNSCIETALVDMYT 476

Query: 197 CLMDLDAAIQIF--REMECKDVISWTRMMGLFVDFEYAGDALKIFRE-MRKSRIICDTVA 253
               ++ A +IF  R +E       T M+  +       +A+ +F     +  I+ D V 
Sbjct: 477 RCGRMEDAEKIFYQRSLENDYTAMLTSMICGYARNGKLNEAISLFHSGQSEGAIVMDEVM 536

Query: 254 LLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT 313
             +++S+   +G  + G Q+H   +  GL +E  + N+ ++MYSKC ++D +  VFN + 
Sbjct: 537 STSILSLCGSIGFHEMGMQMHCHALKSGLITETGVGNATVSMYSKCWNMDDAVRVFNTMN 596

Query: 314 EKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTA--SGELAALEI 371
            + +VSW  +++G+V +    +AL  + KM +      DSIT   I++A    EL  ++ 
Sbjct: 597 MQDIVSWNGLVAGHVLHWQGDKALGIWKKMEKAGIKP-DSITFALIISAYKHTELNLVDS 655

Query: 372 CLQLHGIAFEAGFPRYRSVQN--CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYG 429
           C  L  ++ E       ++++    IS   + G ++ A      M    DV  W  ++  
Sbjct: 656 CRSLF-VSMETEHNIKPTLEHYASFISVLGRWGLLEEAEQTIRNMPLEPDVYVWRALLNS 714

Query: 430 YGVN 433
             +N
Sbjct: 715 CRIN 718



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 95/173 (54%), Gaps = 4/173 (2%)

Query: 255 LNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE 314
            +L+ ++   GD    + +HAQ +   L+ ++ L N++I+ Y K G +  +  VF+ ++ 
Sbjct: 101 FDLLRLSTRYGDPDLARAVHAQFL--KLEEDIFLGNALISAYLKLGLVRDADKVFSGLSC 158

Query: 315 KSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQ 374
            ++VS+TA+ISG+ ++    EA+  F  M     +  +  T V+ILTA       ++  Q
Sbjct: 159 PNVVSYTALISGFSKSDWEDEAVELFFAMLDSGIEP-NEYTFVAILTACIRNMDYQLGSQ 217

Query: 375 LHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
           +HGI  + G      + N L+  Y KCG +DL   +FEEM   RD+ SWNT+I
Sbjct: 218 VHGIVVKLGLLSCVFICNALMGLYCKCGFLDLVLRLFEEMP-ERDITSWNTVI 269


>gi|357156786|ref|XP_003577575.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 694

 Score =  233 bits (593), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 185/669 (27%), Positives = 307/669 (45%), Gaps = 122/669 (18%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  +  + + +LS   + G+I +A  LFDEIP +N VSW+ +I   S +G    +   F 
Sbjct: 38  PSRNTVSYNAMLSALARHGRIADARRLFDEIPRRNTVSWNAMIAACSDHGRVADARDLFD 97

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLM----------------VKFGLES 104
            M        S+T++    A AG   L LAR     M                 K G   
Sbjct: 98  AMPARDGF--SWTLMVSCYARAG--ELGLARDALDRMPGDKCTACYNAMISGYAKHGRFD 153

Query: 105 D---LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLV-------------- 147
           D   L   +  P ++S N+++ G   N    +AV  F+      +V              
Sbjct: 154 DAVALLREMPAPDIISWNSVLVGLTRNGEMVRAVKFFDEMPARDMVSWNLMLEGYVRAGD 213

Query: 148 -------------PNAVTMLTVIRG-CVALGSRALCELIHGLTIKLGLILDVSVNNSVLD 193
                        PN V+ +T++ G C A       EL   +  +     +V+  N +L 
Sbjct: 214 VDSAAGLFAGVPSPNVVSWVTLLNGYCRAGRIGEARELFDRIPDR-----NVAAWNVMLS 268

Query: 194 MYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV---DFEYAGDALKIF----------- 239
            Y  L  ++ A ++F EM  K+ ISWT M+   V     + A D L              
Sbjct: 269 GYLRLSHMEEAYKLFTEMPDKNSISWTTMISALVRGGKLQEAKDLLDKMPFDSFAAKTAL 328

Query: 240 -------REMRKSRIICDTVALLNLISVNAIL-GDLKRGKQLHAQVVLGGLQSELRLS-N 290
                  + +  +R+I D + + + +  N ++ G +  G    A V+   + ++  +S N
Sbjct: 329 MHGYLQSKMIDDARLIFDGLEVRDAVCWNTMISGYVHCGMLDEAMVLFQQMPNKDMVSWN 388

Query: 291 SIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDS 350
           ++IA Y+  G +  +  +F ++ +++ VSW ++ISG+VQNG   EAL  F+ MR++    
Sbjct: 389 TMIAGYAHDGQMRKAVGIFRKMNQRNTVSWNSVISGFVQNGLCVEALQHFVLMRRD-AKR 447

Query: 351 VDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIV 410
            D  T    L+A  +LAAL +  Q H +   +G+       N LIS+Y+KCG +  A  V
Sbjct: 448 ADWSTYACCLSACADLAALHVGRQFHSLLARSGYIGDSFAGNALISAYAKCGRILEARQV 507

Query: 411 FEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGL 470
           F+EM    D+VSWN +I GY  NGHG  A++++ +M +    PD  T++ +L+AC HAGL
Sbjct: 508 FDEMP-APDIVSWNALIDGYASNGHGTEAISVFREMEDNDVRPDEVTFVGVLSACSHAGL 566

Query: 471 TNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM--GPN--IW 526
            ++G   FN M ++  ++P  EHY C+VDLL R+G LS+A     ++++GM   PN  +W
Sbjct: 567 IDEGFDFFNSMTKDYALRPVAEHYACMVDLLGRSGRLSEAF----EIIQGMQVQPNAGVW 622

Query: 527 RALLSGCVLH---------------------------------VGRFQDAEALRSGSQKK 553
            A+L  C +H                                  G++ +A+ +R   +++
Sbjct: 623 GAMLGACRVHKNHELAQLAAEKLYELEPHKTSNYVLLSNITAEAGKWDEAQNMRVFIKER 682

Query: 554 GIIKIPGIS 562
           G+ K PG++
Sbjct: 683 GVHKTPGLA 691


>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  233 bits (593), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 154/508 (30%), Positives = 255/508 (50%), Gaps = 42/508 (8%)

Query: 100 FGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFF---RGSGLVPNAVTMLTV 156
           F   S  F  + +P   S N ++ G   +  + ++ L   F+   +  GL PN +T   +
Sbjct: 76  FAYASVFFSNILDPTEYSFNVMIRGL--STAWNKSSLALEFYSRMKFLGLKPNNLTYPFL 133

Query: 157 IRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
              C  L +     + H   I+ GL  D  V++S++ MY+    +  A ++F E+  KD+
Sbjct: 134 FIACSNLLAVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDL 193

Query: 217 ISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQ 276
           +SW  M+  +    +AG+A+ +FREM ++    + ++L++++     LGDLK G  +   
Sbjct: 194 VSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEF 253

Query: 277 VVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
           VV   +     + +++I MY KCGDL S+R +F+ + +K  V+W A+I+GY QNG + EA
Sbjct: 254 VVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEA 313

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
           +  F  MR   T + D ITL+ IL+A   + AL++  Q+   A E GF     V   L+ 
Sbjct: 314 IKLFQDMRMSST-APDQITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVD 372

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV--PD 454
            Y+KCG++D A+ VF  M   ++ VSWN +I     +G  + ALAL+  M   G    P+
Sbjct: 373 MYAKCGSLDNAFRVFYGMPN-KNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPN 431

Query: 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLA 514
             T++ +L+AC HAGL ++G  +F+ M     + P  EHY C+VDL +RAG L +A    
Sbjct: 432 DITFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFV 491

Query: 515 GKLLEGMGPNIWRALLSGC---------------------------------VLHVGRFQ 541
             + E     I  ALL  C                                   ++ R+ 
Sbjct: 492 MTMPEKPDEVILGALLGACQKRKNIDISERVMKLLLELEPSNSGNYVISSKLYANLRRWD 551

Query: 542 DAEALRSGSQKKGIIKIPGISFLNSTSR 569
           D+  +R   ++KG+ K PG S+++  S+
Sbjct: 552 DSARMRMLMKQKGVSKTPGCSWIDINSQ 579



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 109/411 (26%), Positives = 206/411 (50%), Gaps = 27/411 (6%)

Query: 24  AENLFDEIPEKNVVSWSIVIHGYSINGFHEKSM--KAFSHMMLSGLLPNSFTMVGVLVAA 81
           A   F  I +    S++++I G S   +++ S+  + +S M   GL PN+ T   + +A 
Sbjct: 79  ASVFFSNILDPTEYSFNVMIRGLS-TAWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIAC 137

Query: 82  AGLQNLELARSIHGLMVKFGLESD----------------------LFEGLKNPYLVSCN 119
           + L  +E  R  H  +++ GL+ D                      +F+ +    LVS N
Sbjct: 138 SNLLAVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWN 197

Query: 120 AIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKL 179
           ++++G+   +   +AV LF     +G  PN +++++V+  C  LG   L   +    ++ 
Sbjct: 198 SMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVEN 257

Query: 180 GLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIF 239
            + L+  + ++++ MY    DL +A +IF  M+ KD ++W  M+  +     + +A+K+F
Sbjct: 258 KMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLF 317

Query: 240 REMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKC 299
           ++MR S    D + L+ ++S  A +G L  GKQ+       G Q ++ +  +++ MY+KC
Sbjct: 318 QDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKC 377

Query: 300 GDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE-KTDSVDSITLVS 358
           G LD++  VF  +  K+ VSW A+IS    +G A+EAL  F  M  E  T S + IT V 
Sbjct: 378 GSLDNAFRVFYGMPNKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVG 437

Query: 359 ILTASGELAALEICLQL-HGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
           +L+A      ++   +L H ++   G        +C++  +S+ G+++ A+
Sbjct: 438 VLSACVHAGLVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAW 488



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 170/357 (47%), Gaps = 29/357 (8%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + S  L++ Y + GK+ +A  +FDEI +K++VSW+ +I GYS      +++  F  MM
Sbjct: 161 DGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMM 220

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK----------------FGLESDL- 106
            +G  PN  ++V VL A   L +L+L   +   +V+                +G   DL 
Sbjct: 221 EAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLV 280

Query: 107 -----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                F+ +K    V+ NA++ G+  N + ++A+ LF   R S   P+ +T++ ++  C 
Sbjct: 281 SARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACA 340

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
           ++G+  L + +     + G   DV V  +++DMY+    LD A ++F  M  K+ +SW  
Sbjct: 341 SIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPNKNEVSWNA 400

Query: 222 MMGLFVDFEYAGDALKIFREMRKS--RIICDTVALLNLISVNAILGDLKRGKQL-HAQVV 278
           M+        A +AL +F+ M      +  + +  + ++S     G +  G++L H    
Sbjct: 401 MISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHMMSS 460

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
             GL  ++   + ++ ++S+ G L+ +      + EK       +I G +   C + 
Sbjct: 461 SFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEKP----DEVILGALLGACQKR 513


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  233 bits (593), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 149/519 (28%), Positives = 249/519 (47%), Gaps = 66/519 (12%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           LF  ++ P L   N+++ G   +     A++ F     SG+ PN+ T   +++ C  L S
Sbjct: 85  LFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLAS 144

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMY---------------SCLMD---------- 200
               + IH   +KLG + DV ++ S+++MY               S   D          
Sbjct: 145 AHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAG 204

Query: 201 ------LDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVAL 254
                 +D A Q+F EM  KDV+SW  M+  +     + +AL +F +MRK+ +  +   +
Sbjct: 205 YALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTI 264

Query: 255 LNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE 314
           ++++S  A    L  G  + + +   GL S L+L N++I MYSKCGDL ++R +F+ + E
Sbjct: 265 VSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLE 324

Query: 315 KSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQ 374
           + ++SW  +I GY      +EAL  F +M     +  + IT +SIL +   L A+++   
Sbjct: 325 RDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTE-ITFLSILPSCAHLGAIDLGKW 383

Query: 375 LHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNG 434
           +H    +       S+   LI  Y+KCGN+  A  VF+ M  ++ + SWN +I G  ++G
Sbjct: 384 IHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMK-IKSLASWNAMICGLAMHG 442

Query: 435 HGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY 494
             + A  L+ KM+  G  P+  T++ IL+AC HAGL + G   F+ M+++ K+ P  +HY
Sbjct: 443 QADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHY 502

Query: 495 GCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH------------------ 536
           GC++DLL RAG   +A  L   +       IW +LL  C  H                  
Sbjct: 503 GCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDHGRVELGELVAERLFELEP 562

Query: 537 ---------------VGRFQDAEALRSGSQKKGIIKIPG 560
                           G++ D   +R+    +G+ K+PG
Sbjct: 563 DNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVPG 601



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 148/555 (26%), Positives = 244/555 (43%), Gaps = 92/555 (16%)

Query: 17  KSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVG 76
           +SG I  A +LF+ I E N+  W+ +I G S++     ++  F  M+ SG+ PNS+T   
Sbjct: 75  RSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPF 134

Query: 77  VLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY-------------------- 114
           +L + A L +    + IH  ++K G  SD+F    L N Y                    
Sbjct: 135 LLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRD 194

Query: 115 LVSCNAIVAGFI-------NNKLF------------------------QQAVLLFNFFRG 143
            +S  A++AG+          +LF                        ++A+LLF   R 
Sbjct: 195 AISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRK 254

Query: 144 SGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDA 203
           + + PN  T+++V+  C    +  L   +       GL  ++ + N+++DMYS   DL  
Sbjct: 255 ANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQT 314

Query: 204 AIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAI 263
           A ++F +M  +DVISW  M+G +       +AL +FREM  S +    +  L+++   A 
Sbjct: 315 ARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAH 374

Query: 264 LGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAI 323
           LG +  GK +HA +          LS S+I +Y+KCG++ ++R VF+ +  KSL SW A+
Sbjct: 375 LGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAM 434

Query: 324 ISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG 383
           I G   +G A +A   F KM  +  +  + IT V IL+A      +++  Q         
Sbjct: 435 ICGLAMHGQADKAFELFSKMSSDGIEP-NEITFVGILSACKHAGLVDLGQQFFS------ 487

Query: 384 FPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALY 443
                 VQ+  IS  S            +  G + D++         G  G  E A +L 
Sbjct: 488 ----SMVQDYKISPKS------------QHYGCMIDLL---------GRAGLFEEAESLL 522

Query: 444 HKMTETGEV-PDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLA 502
             M    EV PD + + S+L AC   G    G ++  ++ E     P    Y  + ++ A
Sbjct: 523 QNM----EVKPDGAIWGSLLGACRDHGRVELGELVAERLFELEPDNPGA--YVLLSNIYA 576

Query: 503 RAGCLSDASGLAGKL 517
            AG   D + +  +L
Sbjct: 577 GAGKWDDVARIRTRL 591



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 143/297 (48%), Gaps = 22/297 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D  + + L++ Y   G +  A  LFDE+P K+VVSW+ +I GY+  G  ++++  F  M 
Sbjct: 194 DAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMR 253

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES------------------- 104
            + + PN  T+V VL A A    L+L  S+   +   GL S                   
Sbjct: 254 KANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQ 313

Query: 105 ---DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
              +LF+ +    ++S N ++ G+ +   +++A+ LF     SG+ P  +T L+++  C 
Sbjct: 314 TARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCA 373

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            LG+  L + IH    K    +  S++ S++D+Y+   ++ AA Q+F  M+ K + SW  
Sbjct: 374 HLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNA 433

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           M+        A  A ++F +M    I  + +  + ++S     G +  G+Q  + +V
Sbjct: 434 MICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMV 490



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 142/308 (46%), Gaps = 36/308 (11%)

Query: 271 KQLHAQVVLGGLQSELRLSNSII--AMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYV 328
           KQ+HA ++  GL + L   + +I  +  S+ GD+  + S+FN I E +L  W ++I G  
Sbjct: 46  KQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLS 105

Query: 329 QNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYR 388
            +     AL  F++M     +  +S T   +L +  +LA+     Q+H    + GF    
Sbjct: 106 MSLSPALALVFFVRMIYSGVEP-NSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDV 164

Query: 389 SVQNCLISSYSKCGNVDLAYIVFEEMGF------------------------------LR 418
            +   LI+ Y++ G ++ A +VF++  F                              ++
Sbjct: 165 FIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVK 224

Query: 419 DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIF 478
           DVVSWN +I GY   G  + AL L+  M +    P+ ST +S+L+AC  +   + G  + 
Sbjct: 225 DVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSM- 283

Query: 479 NQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVG 538
              IE+  +  + +    ++D+ ++ G L  A  L   +LE    + W  ++ G   H+ 
Sbjct: 284 RSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVIS-WNVMIGGYT-HMC 341

Query: 539 RFQDAEAL 546
            +++A AL
Sbjct: 342 SYKEALAL 349


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  233 bits (593), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 163/584 (27%), Positives = 276/584 (47%), Gaps = 103/584 (17%)

Query: 21  IKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVA 80
           ++ A  LFD++PE++VVSW+ ++ GY+ NG+ +++ + F  M       NS +  G+L A
Sbjct: 46  LRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCK----NSISWNGMLAA 101

Query: 81  AAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNF 140
                 +E AR              LFE   +  L+S N ++ G++       A  +F+ 
Sbjct: 102 YVQNGRIEDARR-------------LFESKADWELISWNCMMGGYVKRNRLVDARGIFDR 148

Query: 141 FRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMD 200
                   + V+  T+I G    G                                   +
Sbjct: 149 MPER----DEVSWNTMISGYAQNG-----------------------------------E 169

Query: 201 LDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISV 260
           L  A ++F E   +DV +WT M+  +V      +A ++F          D +   N +S 
Sbjct: 170 LLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVF----------DGMPEKNSVSW 219

Query: 261 NAILGDLKRGKQL-HAQVVLGGLQSE-LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLV 318
           NAI+    + K++  A+ +   +  + +   N++I  Y++ GD+  +R+ F+++ ++  +
Sbjct: 220 NAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSI 279

Query: 319 SWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGI 378
           SW AII+GY Q+G   EAL+ F++M+++  + ++  T  S L+   E+AALE+  Q+HG 
Sbjct: 280 SWAAIIAGYAQSGYGEEALHLFVEMKRD-GERLNRSTFTSTLSTCAEIAALELGKQVHGR 338

Query: 379 AFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGET 438
             +AG      V N L+  Y KCGN+D AYIVFE +   ++VVSWNT+I GY  +G G+ 
Sbjct: 339 VVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIE-EKEVVSWNTMIAGYARHGFGKE 397

Query: 439 ALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVV 498
           AL L+  M +TG +PD  T + +L+AC H GL + G   F  M ++  +  + +HY C++
Sbjct: 398 ALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMI 457

Query: 499 DLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH---------------------- 536
           DLL RAG L DA  L   +        W ALL    +H                      
Sbjct: 458 DLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSG 517

Query: 537 -----------VGRFQDAEALRSGSQKKGIIKIPGISFLNSTSR 569
                       GR+ D   +R   + +G+ K+PG S++   ++
Sbjct: 518 MYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNK 561



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 130/494 (26%), Positives = 236/494 (47%), Gaps = 37/494 (7%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  D  + + +LS Y ++G +KEA+ +FDE+P KN +SW+ ++  Y  NG  E + + F 
Sbjct: 57  PERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFE 116

Query: 61  HMMLSGLLPNSFTMVGV-----LVAAAGLQNLELAR---SIHGLMVKFGLESDLFEGLK- 111
                 L+  +  M G      LV A G+ +    R   S + ++  +    +L E  + 
Sbjct: 117 SKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRL 176

Query: 112 ---NPY--LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLV-PNAVTMLTVIRGCVALGS 165
              +P   + +  A+V+G++ N +  +A  +F+     G+   N+V+   +I G V    
Sbjct: 177 FEESPVRDVFTWTAMVSGYVQNGMLDEARRVFD-----GMPEKNSVSWNAIIAGYVQCKR 231

Query: 166 RALC-ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
                EL   +  +     +VS  N+++  Y+   D+  A   F  M  +D ISW  ++ 
Sbjct: 232 MDQARELFEAMPCQ-----NVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIA 286

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            +    Y  +AL +F EM++     +     + +S  A +  L+ GKQ+H +VV  GL+S
Sbjct: 287 GYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLES 346

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
              + N+++ MY KCG++D +  VF  I EK +VSW  +I+GY ++G  +EAL  F  M+
Sbjct: 347 GCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMK 406

Query: 345 QEKTDSV-DSITLVSILTASGELAALEICLQ-LHGIAFEAGFPRYRSVQNCLISSYSKCG 402
             KT  + D +T+V +L+A      ++   +  + +  + G         C+I    + G
Sbjct: 407 --KTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAG 464

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGH---GETALALYHKMTETGEVPDSSTYL 459
            +D A  + + M F  D  +W  ++    ++G+   GE A  +  +M    E  +S  Y+
Sbjct: 465 RLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEM----EPDNSGMYV 520

Query: 460 SILNACGHAGLTND 473
            + N    +G   D
Sbjct: 521 LLSNLYAASGRWGD 534



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 85/299 (28%), Positives = 151/299 (50%), Gaps = 35/299 (11%)

Query: 193 DMYSCLM--DLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREM-------- 242
           D+  C+   +L AA  +F +M  +DV+SW  M+  +    Y  +A +IF EM        
Sbjct: 36  DLRGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISW 95

Query: 243 -------------RKSRIICDTVALLNLISVNAILGD-LKRGKQLHAQVVLGGLQSELRL 288
                          +R + ++ A   LIS N ++G  +KR + + A+ +   +     +
Sbjct: 96  NGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEV 155

Query: 289 S-NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
           S N++I+ Y++ G+L  ++ +F +   + + +WTA++SGYVQNG   EA   F  M ++ 
Sbjct: 156 SWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEK- 214

Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
               +S++  +I+    +   ++   +L    FEA   +  S  N +I+ Y++ G++  A
Sbjct: 215 ----NSVSWNAIIAGYVQCKRMDQAREL----FEAMPCQNVSSWNTMITGYAQNGDIAQA 266

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
              F+ M   RD +SW  II GY  +G+GE AL L+ +M   GE  + ST+ S L+ C 
Sbjct: 267 RNFFDRMP-QRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCA 324



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 141/296 (47%), Gaps = 28/296 (9%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           PC +  + + +++ Y ++G I +A N FD +P+++ +SW+ +I GY+ +G+ E+++  F 
Sbjct: 243 PCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFV 302

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--------------- 105
            M   G   N  T    L   A +  LEL + +HG +VK GLES                
Sbjct: 303 EMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCG 362

Query: 106 -------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                  +FEG++   +VS N ++AG+  +   ++A++LF   + +G++P+ VTM+ V+ 
Sbjct: 363 NIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLS 422

Query: 159 GCVALG-SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK-DV 216
            C   G      E  + +T   G+  +      ++D+      LD A  + + M  + D 
Sbjct: 423 ACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDA 482

Query: 217 ISWTRMMG---LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKR 269
            +W  ++G   +  + E    A K+  EM         V L NL + +   GD+ R
Sbjct: 483 ATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGM-YVLLSNLYAASGRWGDVGR 537



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 95/187 (50%), Gaps = 14/187 (7%)

Query: 301 DLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSIL 360
           +L ++R +F+Q+ E+ +VSW A++SGY QNG  +EA   F +M        +SI+   +L
Sbjct: 45  NLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEM-----PCKNSISWNGML 99

Query: 361 TASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDV 420
            A  +   +E   +L    FE+         NC++  Y K   +  A  +F+ M   RD 
Sbjct: 100 AAYVQNGRIEDARRL----FESKADWELISWNCMMGGYVKRNRLVDARGIFDRMP-ERDE 154

Query: 421 VSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQ 480
           VSWNT+I GY  NG     L    ++ E   V D  T+ ++++     G+ ++   +F+ 
Sbjct: 155 VSWNTMISGYAQNGE----LLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDG 210

Query: 481 MIEENKV 487
           M E+N V
Sbjct: 211 MPEKNSV 217


>gi|242057857|ref|XP_002458074.1| hypothetical protein SORBIDRAFT_03g026520 [Sorghum bicolor]
 gi|241930049|gb|EES03194.1| hypothetical protein SORBIDRAFT_03g026520 [Sorghum bicolor]
          Length = 963

 Score =  233 bits (593), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 170/544 (31%), Positives = 279/544 (51%), Gaps = 36/544 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  S L+S + + G I EA+++F  + EKN V+ + +I G       E+++K F    
Sbjct: 308 DLYVGSALVSAFARHGLIDEAKDIFLSLKEKNAVTLNGLIVGLVKQHCSEEAVKIFVGTR 367

Query: 64  LSGLLPNSFTMVGVLVAAAGL----QNLELARSIHGLMVKFGLESDL----FEGLKNPYL 115
            + ++ N+ T V +L A A      + L   +  HG M++ GL +DL      GL N Y 
Sbjct: 368 -NTIVVNADTYVVLLSAIAEYSIPEEGLRKGKEAHGHMLRTGL-TDLKIAVSNGLVNMY- 424

Query: 116 VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALC--ELIH 173
             C AI +    +K+FQ                + ++  T+I      G + L   + +H
Sbjct: 425 AKCGAIDSA---SKIFQLME-----------ATDRISWNTIISALDQNGLKLLSAGQQVH 470

Query: 174 GLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYA- 232
              +K GL LD SV+N ++ MY     +    ++F  M   D +SW  MMG+    +   
Sbjct: 471 CDAVKWGLDLDTSVSNVLVKMYGECGAMSDCWKVFNSMADHDEVSWNSMMGVMASSQAPI 530

Query: 233 GDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSI 292
            + +++F  M +  +I + V  +NL++  + L  L+ GKQ HA V+  G+  +  + N++
Sbjct: 531 SETVEVFNNMMRGGLIPNKVTFVNLLAALSPLSVLELGKQFHAAVLKHGVMDDNVVDNAL 590

Query: 293 IAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
           I+ Y+K GD++S   +F+ ++  +  VSW ++ISGY+ NG  +EA++  + +       +
Sbjct: 591 ISCYAKSGDMNSCEHLFSNMSGRRDAVSWNSMISGYIYNGYLQEAMD-CVWLMLHSGQIM 649

Query: 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVF 411
           D  T   IL A   +AALE  +++H     +       V++ L+  YSKCG VD A  +F
Sbjct: 650 DCCTFSIILNACASVAALERGMEMHAFGIRSHLESDVVVESALVDMYSKCGRVDYASKLF 709

Query: 412 EEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLT 471
             M   R+  SWN++I GY  +G G  AL  + +M  + E PD  T++S+L+AC HAGL 
Sbjct: 710 NSMT-QRNEFSWNSMISGYARHGLGRKALETFEEMLRSRESPDHVTFVSVLSACSHAGLV 768

Query: 472 NDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN--IWRAL 529
             GL  F +M+ ++ + P  EHY CV+DLL RAG +        ++   M PN  IWR +
Sbjct: 769 ERGLEYF-EMMPDHGILPQIEHYSCVIDLLGRAGKIDKIKEYIQRM--PMKPNALIWRTV 825

Query: 530 LSGC 533
           L  C
Sbjct: 826 LVAC 829



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 139/557 (24%), Positives = 240/557 (43%), Gaps = 85/557 (15%)

Query: 24  AENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSG----LLPNSFTMVGVLV 79
           A+ +FD  P +++++W+ ++  Y+  G    +   F  M        L P   T  G L+
Sbjct: 222 AQRVFDGTPIRDLITWNALMSVYAKKGDVVSTFTLFMDMQREDSRIQLRPTEHTF-GSLI 280

Query: 80  AAAGLQ---------------------NLELARSIHGLMVKFGL---ESDLFEGLKNPYL 115
            A  L                      +L +  ++     + GL     D+F  LK    
Sbjct: 281 TATSLSSGSSAVLDQVFVSVLKSGCSSDLYVGSALVSAFARHGLIDEAKDIFLSLKEKNA 340

Query: 116 VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL-----GSRALCE 170
           V+ N ++ G +     ++AV +F   R + +V NA T + ++           G R   E
Sbjct: 341 VTLNGLIVGLVKQHCSEEAVKIFVGTRNT-IVVNADTYVVLLSAIAEYSIPEEGLRKGKE 399

Query: 171 LIHGLTIKLGLI-LDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDF 229
             HG  ++ GL  L ++V+N +++MY+    +D+A +IF+ ME  D ISW  ++      
Sbjct: 400 -AHGHMLRTGLTDLKIAVSNGLVNMYAKCGAIDSASKIFQLMEATDRISWNTIISALDQ- 457

Query: 230 EYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLS 289
               + LK+                            L  G+Q+H   V  GL  +  +S
Sbjct: 458 ----NGLKL----------------------------LSAGQQVHCDAVKWGLDLDTSVS 485

Query: 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA--REALNQFIKMRQEK 347
           N ++ MY +CG +     VFN + +   VSW +++ G + +  A   E +  F  M +  
Sbjct: 486 NVLVKMYGECGAMSDCWKVFNSMADHDEVSWNSMM-GVMASSQAPISETVEVFNNMMRGG 544

Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
               + +T V++L A   L+ LE+  Q H    + G      V N LIS Y+K G+++  
Sbjct: 545 LIP-NKVTFVNLLAALSPLSVLELGKQFHAAVLKHGVMDDNVVDNALISCYAKSGDMNSC 603

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
             +F  M   RD VSWN++I GY  NG+ + A+     M  +G++ D  T+  ILNAC  
Sbjct: 604 EHLFSNMSGRRDAVSWNSMISGYIYNGYLQEAMDCVWLMLHSGQIMDCCTFSIILNACAS 663

Query: 468 AGLTNDGLVI----FNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
                 G+ +        +E + V  S      +VD+ ++ G +  AS L   + +    
Sbjct: 664 VAALERGMEMHAFGIRSHLESDVVVES-----ALVDMYSKCGRVDYASKLFNSMTQ-RNE 717

Query: 524 NIWRALLSGCVLH-VGR 539
             W +++SG   H +GR
Sbjct: 718 FSWNSMISGYARHGLGR 734



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 125/503 (24%), Positives = 231/503 (45%), Gaps = 80/503 (15%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + S+ L+++Y K  ++  A  +FDE+P++N VSW+ ++ GY + G  E++ + F  M+
Sbjct: 94  DLFLSNHLVNSYAKGARLAAASRVFDEMPQRNAVSWTCLLSGYVLQGITEEAFRVFRAML 153

Query: 64  LS---GLLPNSFTMVGVLVAA--AGLQNLELARSIHGLMVK----------------FG- 101
                G  P SFT   +L A    G   L  A  +HGL+ K                +G 
Sbjct: 154 REVEPGCRPTSFTFGTLLRACQDGGPDRLGFATQVHGLLSKTEYASNTTVCNALISMYGS 213

Query: 102 -------LESDLFEGLKNPYLVSCNAIVAGFINN-KLFQQAVLLFNFFRGSG---LVPNA 150
                  L   +F+G     L++ NA+++ +     +     L  +  R      L P  
Sbjct: 214 CTVGPPILAQRVFDGTPIRDLITWNALMSVYAKKGDVVSTFTLFMDMQREDSRIQLRPTE 273

Query: 151 VTMLTVIRGC-VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFR 209
            T  ++I    ++ GS A+ + +    +K G   D+ V ++++  ++    +D A  IF 
Sbjct: 274 HTFGSLITATSLSSGSSAVLDQVFVSVLKSGCSSDLYVGSALVSAFARHGLIDEAKDIFL 333

Query: 210 EMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRII-CDT-VALLNLISVNAILGD- 266
            ++ K+ ++   ++   V    + +A+KIF   R + ++  DT V LL+ I+  +I  + 
Sbjct: 334 SLKEKNAVTLNGLIVGLVKQHCSEEAVKIFVGTRNTIVVNADTYVVLLSAIAEYSIPEEG 393

Query: 267 LKRGKQLHAQVVLGGLQS-ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIIS 325
           L++GK+ H  ++  GL   ++ +SN ++ MY+KCG +DS+  +F  +     +SW  IIS
Sbjct: 394 LRKGKEAHGHMLRTGLTDLKIAVSNGLVNMYAKCGAIDSASKIFQLMEATDRISWNTIIS 453

Query: 326 GYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFP 385
              QNG                            L ++G+        Q+H  A + G  
Sbjct: 454 ALDQNGLK--------------------------LLSAGQ--------QVHCDAVKWGLD 479

Query: 386 RYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALA---- 441
              SV N L+  Y +CG +   + VF  M    D VSWN+++   GV    +  ++    
Sbjct: 480 LDTSVSNVLVKMYGECGAMSDCWKVFNSMAD-HDEVSWNSMM---GVMASSQAPISETVE 535

Query: 442 LYHKMTETGEVPDSSTYLSILNA 464
           +++ M   G +P+  T++++L A
Sbjct: 536 VFNNMMRGGLIPNKVTFVNLLAA 558



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 100/204 (49%), Gaps = 11/204 (5%)

Query: 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
           + LH +++  GL  +L LSN ++  Y+K   L ++  VF+++ +++ VSWT ++SGYV  
Sbjct: 80  ENLHVELIKRGLNHDLFLSNHLVNSYAKGARLAAASRVFDEMPQRNAVSWTCLLSGYVLQ 139

Query: 331 GCAREALNQFIKMRQEKTDSV--DSITLVSILTA--SGELAALEICLQLHGIAFEAGFPR 386
           G   EA   F  M +E        S T  ++L A   G    L    Q+HG+  +  +  
Sbjct: 140 GITEEAFRVFRAMLREVEPGCRPTSFTFGTLLRACQDGGPDRLGFATQVHGLLSKTEYAS 199

Query: 387 YRSVQNCLISSYSKC--GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH 444
             +V N LIS Y  C  G   LA  VF+    +RD+++WN ++  Y   G   +   L+ 
Sbjct: 200 NTTVCNALISMYGSCTVGPPILAQRVFDGTP-IRDLITWNALMSVYAKKGDVVSTFTLFM 258

Query: 445 KMT-ETGEV---PDSSTYLSILNA 464
            M  E   +   P   T+ S++ A
Sbjct: 259 DMQREDSRIQLRPTEHTFGSLITA 282



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 88/381 (23%), Positives = 168/381 (44%), Gaps = 24/381 (6%)

Query: 170 ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDF 229
           E +H   IK GL  D+ ++N +++ Y+    L AA ++F EM  ++ +SWT ++  +V  
Sbjct: 80  ENLHVELIKRGLNHDLFLSNHLVNSYAKGARLAAASRVFDEMPQRNAVSWTCLLSGYVLQ 139

Query: 230 EYAGDALKIFREMRKS-----RIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
               +A ++FR M +      R    T   L     +     L    Q+H  +      S
Sbjct: 140 GITEEAFRVFRAMLREVEPGCRPTSFTFGTLLRACQDGGPDRLGFATQVHGLLSKTEYAS 199

Query: 285 ELRLSNSIIAMYSKC--GDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
              + N++I+MY  C  G    ++ VF+    + L++W A++S Y + G        F+ 
Sbjct: 200 NTTVCNALISMYGSCTVGPPILAQRVFDGTPIRDLITWNALMSVYAKKGDVVSTFTLFMD 259

Query: 343 MRQEKTD---SVDSITLVSILTA----SGELAALEICLQLHGIAFEAGFPRYRSVQNCLI 395
           M++E +         T  S++TA    SG  A L+   Q+     ++G      V + L+
Sbjct: 260 MQREDSRIQLRPTEHTFGSLITATSLSSGSSAVLD---QVFVSVLKSGCSSDLYVGSALV 316

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
           S++++ G +D A  +F  +   ++ V+ N +I G       E A+ ++   T    V ++
Sbjct: 317 SAFARHGLIDEAKDIFLSLK-EKNAVTLNGLIVGLVKQHCSEEAVKIFVG-TRNTIVVNA 374

Query: 456 STYLSILNACGHAGLTNDGLV----IFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDAS 511
            TY+ +L+A     +  +GL         M+              +V++ A+ G +  AS
Sbjct: 375 DTYVVLLSAIAEYSIPEEGLRKGKEAHGHMLRTGLTDLKIAVSNGLVNMYAKCGAIDSAS 434

Query: 512 GLAGKLLEGMGPNIWRALLSG 532
            +  +L+E      W  ++S 
Sbjct: 435 KIF-QLMEATDRISWNTIISA 454


>gi|255544622|ref|XP_002513372.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547280|gb|EEF48775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 597

 Score =  233 bits (593), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 149/523 (28%), Positives = 268/523 (51%), Gaps = 41/523 (7%)

Query: 86  NLELARSIHGLMVKFGLE---SDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFR 142
           NL L+  +    VKFG       +F+ +    +VS  A ++G+  N  +Q A+L+F+   
Sbjct: 71  NLHLSTKLIIFYVKFGETINARKVFDRMPERNVVSWTAQISGYAKNGHYQDALLVFSQMG 130

Query: 143 GSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLD 202
            +G+  N  T  +V+R C  L        IHG   K   I ++ V ++++D++S   +++
Sbjct: 131 RAGVRANQFTYGSVLRACTGLRCLERGMQIHGCIQKNRFIGNLFVQSALVDLHSKCGNME 190

Query: 203 AAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNA 262
            A  +F  M  +DV+SW  ++G +   ++  D+ ++F  M    +  D   L +++  ++
Sbjct: 191 DARYLFETMSERDVVSWNAVIGGYAAQDFNDDSFRMFYSMMGEGVTPDCFTLGSVLKASS 250

Query: 263 ILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTA 322
              +L +  Q+H  ++  G  S + L+ S+I  Y+K   + S+ +++  + +K ++S+TA
Sbjct: 251 RANNLIKVCQIHGIIIQLGFGSHIDLNGSLIDAYAKSEGMKSASALYKSMLKKDVISFTA 310

Query: 323 IISGYVQN-GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFE 381
           I++GY +    +REAL+ F  M Q     +D +T  ++L    ++A+L I  Q+H +A +
Sbjct: 311 IMTGYARKCSYSREALDLFKDM-QHIFMEIDDVTFCTMLNVCADIASLSIGRQIHALAIK 369

Query: 382 AGFPRYR-SVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETAL 440
              P Y  +  N L+  Y+K G ++ A   F EM   ++V+SW ++I GYG +G+G  A+
Sbjct: 370 YK-PSYDVATGNALVDMYAKSGEIEDATRAFYEMK-EKNVISWTSLITGYGKHGYGHEAI 427

Query: 441 ALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDL 500
           ALY KM   G  P+  T+LS+L AC H+GLT +G   FN MI +  + P  EHY C++DL
Sbjct: 428 ALYKKMEYEGLKPNDITFLSLLFACSHSGLTGEGWECFNNMITKYNILPRAEHYSCMIDL 487

Query: 501 LARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH------------------------ 536
            AR G L +A  +  K+      ++W A+L  C ++                        
Sbjct: 488 FARGGQLEEAYNMICKMNIKPNSSLWGAILGACSIYGHMSLGEVAATHLLRMDPENSANY 547

Query: 537 ---------VGRFQDAEALRSGSQKKGIIKIPGISFLNSTSRD 570
                     G +  A  +R+  + + + KIPG S + ST+++
Sbjct: 548 VVLAGIYAASGSWDKACRMRNLMEYRSLKKIPGYSIIQSTNKN 590



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 139/466 (29%), Positives = 234/466 (50%), Gaps = 42/466 (9%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+KL+  Y K G+   A  +FD +PE+NVVSW+  I GY+ NG ++ ++  FS M  +G+
Sbjct: 75  STKLIIFYVKFGETINARKVFDRMPERNVVSWTAQISGYAKNGHYQDALLVFSQMGRAGV 134

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHG-------------------LMVKFGLESD--- 105
             N FT   VL A  GL+ LE    IHG                   L  K G   D   
Sbjct: 135 RANQFTYGSVLRACTGLRCLERGMQIHGCIQKNRFIGNLFVQSALVDLHSKCGNMEDARY 194

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           LFE +    +VS NA++ G+        +  +F    G G+ P+  T+ +V++      S
Sbjct: 195 LFETMSERDVVSWNAVIGGYAAQDFNDDSFRMFYSMMGEGVTPDCFTLGSVLKA----SS 250

Query: 166 RA-----LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
           RA     +C+ IHG+ I+LG    + +N S++D Y+    + +A  +++ M  KDVIS+T
Sbjct: 251 RANNLIKVCQ-IHGIIIQLGFGSHIDLNGSLIDAYAKSEGMKSASALYKSMLKKDVISFT 309

Query: 221 RMM-GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
            +M G      Y+ +AL +F++M+   +  D V    +++V A +  L  G+Q+HA  + 
Sbjct: 310 AIMTGYARKCSYSREALDLFKDMQHIFMEIDDVTFCTMLNVCADIASLSIGRQIHALAIK 369

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
                ++   N+++ MY+K G+++ +   F ++ EK+++SWT++I+GY ++G   EA+  
Sbjct: 370 YKPSYDVATGNALVDMYAKSGEIEDATRAFYEMKEKNVISWTSLITGYGKHGYGHEAIAL 429

Query: 340 FIKMRQEKTDSVDSITLVSILTA---SGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
           + KM  E     D IT +S+L A   SG       C   + I      PR     +C+I 
Sbjct: 430 YKKMEYEGLKPND-ITFLSLLFACSHSGLTGEGWECFN-NMITKYNILPRAEHY-SCMID 486

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGH---GETA 439
            +++ G ++ AY +  +M    +   W  I+    + GH   GE A
Sbjct: 487 LFARGGQLEEAYNMICKMNIKPNSSLWGAILGACSIYGHMSLGEVA 532



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 114/451 (25%), Positives = 210/451 (46%), Gaps = 24/451 (5%)

Query: 129 KLFQQAVLLFNF----FRGSGLVPNAVTM-----LTVIRGCVALGSRALCELIHGLTIKL 179
           K F+  +L F F    F  S   P    +     + +++ C+         LIH   I+ 
Sbjct: 7   KKFRYNLLQFTFLKQRFHHSPCEPELTHLSSSLYMKILQLCIETEDLKQGCLIHSHIIRN 66

Query: 180 GLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIF 239
           G   ++ ++  ++  Y    +   A ++F  M  ++V+SWT  +  +    +  DAL +F
Sbjct: 67  GFDSNLHLSTKLIIFYVKFGETINARKVFDRMPERNVVSWTAQISGYAKNGHYQDALLVF 126

Query: 240 REMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKC 299
            +M ++ +  +     +++     L  L+RG Q+H  +        L + ++++ ++SKC
Sbjct: 127 SQMGRAGVRANQFTYGSVLRACTGLRCLERGMQIHGCIQKNRFIGNLFVQSALVDLHSKC 186

Query: 300 GDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSI 359
           G+++ +R +F  ++E+ +VSW A+I GY       ++   F  M  E   + D  TL S+
Sbjct: 187 GNMEDARYLFETMSERDVVSWNAVIGGYAAQDFNDDSFRMFYSMMGEGV-TPDCFTLGSV 245

Query: 360 LTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRD 419
           L AS     L    Q+HGI  + GF  +  +   LI +Y+K   +  A  +++ M   +D
Sbjct: 246 LKASSRANNLIKVCQIHGIIIQLGFGSHIDLNGSLIDAYAKSEGMKSASALYKSM-LKKD 304

Query: 420 VVSWNTIIYGYGVN-GHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIF 478
           V+S+  I+ GY     +   AL L+  M       D  T+ ++LN C      + G  I 
Sbjct: 305 VISFTAIMTGYARKCSYSREALDLFKDMQHIFMEIDDVTFCTMLNVCADIASLSIGRQIH 364

Query: 479 NQMIEENKVKPSQE--HYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI--WRALLSGCV 534
              I   K KPS +      +VD+ A++G + DA+    ++ E    N+  W +L++G  
Sbjct: 365 ALAI---KYKPSYDVATGNALVDMYAKSGEIEDATRAFYEMKE---KNVISWTSLITGYG 418

Query: 535 LHVGRFQDAEALRSGSQKKGIIKIPGISFLN 565
            H G   +A AL    + +G +K   I+FL+
Sbjct: 419 KH-GYGHEAIALYKKMEYEG-LKPNDITFLS 447



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 47/82 (57%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  D    + L+  Y KSG+I++A   F E+ EKNV+SW+ +I GY  +G+  +++  + 
Sbjct: 372 PSYDVATGNALVDMYAKSGEIEDATRAFYEMKEKNVISWTSLITGYGKHGYGHEAIALYK 431

Query: 61  HMMLSGLLPNSFTMVGVLVAAA 82
            M   GL PN  T + +L A +
Sbjct: 432 KMEYEGLKPNDITFLSLLFACS 453


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  233 bits (593), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 149/515 (28%), Positives = 253/515 (49%), Gaps = 70/515 (13%)

Query: 119 NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIK 178
           N+I+    +N LF +A+ L++  +   L P+  T  +VI  C  L    + + IH   + 
Sbjct: 84  NSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLD 143

Query: 179 LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKI 238
           +G   D+ + N+++DMY    DLD A ++F EM  +DV+SW  ++  +    Y  +AL+I
Sbjct: 144 MGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEI 203

Query: 239 FREMRK------SRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSI 292
           + +  K      ++   D + + +++     LGDL+ GK +H  ++  G + +   SN +
Sbjct: 204 YYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNIL 263

Query: 293 IAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE------ 346
           I MY+KCG+L +S+ VF+ +  K  VSW ++I+ Y+QNG   ++L  F  M+        
Sbjct: 264 INMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFENMKARDIITWN 323

Query: 347 ----------------------KTDSV--DSITLVSILTASGELAALEICLQLHGIAFEA 382
                                 +T+ V  D  T++SIL     LAA     ++HG  F+ 
Sbjct: 324 TIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKL 383

Query: 383 GFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALAL 442
           G      V N LI  YSKCG++  ++ VF+ M   +DVV+W  +I   G+ G G+ A+  
Sbjct: 384 GLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMK-TKDVVTWTALISACGMYGEGKKAVRA 442

Query: 443 YHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLA 502
           + +M   G VPD   +++I+ AC H+GL  +GL  F++M ++ K++P  EHY CVVDLL+
Sbjct: 443 FGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLS 502

Query: 503 RAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH-------------------------- 536
           R+  L  A      +      +IW ALLS C +                           
Sbjct: 503 RSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTGYYVL 562

Query: 537 -------VGRFQDAEALRSGSQKKGIIKIPGISFL 564
                  +G++    ++R   + +G+ K PG S++
Sbjct: 563 VSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWM 597



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 128/518 (24%), Positives = 234/518 (45%), Gaps = 76/518 (14%)

Query: 8   SSKLLSNYFKSGKIKEAENLFD-EIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSG 66
           S+KL++ Y        + ++F    P  NV  W+ +I   + NG   +++  +S      
Sbjct: 51  SAKLIAKYAHFRDPTSSFSVFRLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIR 110

Query: 67  LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL-------------------- 106
           L P+++T   V+ A AGL + E+A+SIH  ++  G  SDL                    
Sbjct: 111 LQPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKAR 170

Query: 107 --FEGLKNPYLVSCNAIVAGFINN-------KLFQQAVLLF----NFFRGSGLVPNAVTM 153
             FE +    +VS N++++G+  N       +++ Q++ LF    N F+     P+ +T+
Sbjct: 171 KVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYQSIKLFMEMVNQFK-----PDLLTI 225

Query: 154 LTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC 213
            ++++ C  LG     + +H   I  G   D + +N +++MY+   +L A+ ++F  M+C
Sbjct: 226 TSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKC 285

Query: 214 KDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIIC------------------------ 249
           KD +SW  M+ +++     GD+LK+F  M+   II                         
Sbjct: 286 KDSVSWNSMINVYIQNGKMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRM 345

Query: 250 -------DTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDL 302
                  D   +L+++ V ++L   ++GK++H  +   GL+S++ + N +I MYSKCG L
Sbjct: 346 RTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSL 405

Query: 303 DSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTA 362
            +S  VF  +  K +V+WTA+IS     G  ++A+  F +M        D +  V+I+ A
Sbjct: 406 RNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGI-VPDHVAFVAIIFA 464

Query: 363 SGELAALEICLQ-LHGIAFEAGF-PRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDV 420
                 +E  L   H +  +    PR      C++   S+   +D A      M    D 
Sbjct: 465 CSHSGLVEEGLNYFHRMKKDYKIEPRIEHYA-CVVDLLSRSALLDKAEDFILSMPLKPDS 523

Query: 421 VSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
             W  ++    ++G  E A  +  ++ E    PD + Y
Sbjct: 524 SIWGALLSACRMSGDTEIAERVSERIIELN--PDDTGY 559



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 115/423 (27%), Positives = 196/423 (46%), Gaps = 48/423 (11%)

Query: 155 TVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFR-EMEC 213
           ++ R   +  +      +H L I LGL   V  +  ++  Y+   D  ++  +FR     
Sbjct: 18  SISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPS 77

Query: 214 KDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQL 273
            +V  W  ++          +AL ++ E ++ R+  DT    ++I+  A L D +  K +
Sbjct: 78  NNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSI 137

Query: 274 HAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA 333
           H +V+  G  S+L + N++I MY +  DLD +R VF ++  + +VSW ++ISGY  NG  
Sbjct: 138 HDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYW 197

Query: 334 REALN---QFIKMRQEKTDSV--DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYR 388
            EAL    Q IK+  E  +    D +T+ SIL A G L  LE    +H     +G+    
Sbjct: 198 NEALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDT 257

Query: 389 SVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTE 448
           +  N LI+ Y+KCGN+  +  VF  M   +D VSWN++I  Y  NG    +L ++  M  
Sbjct: 258 TASNILINMYAKCGNLLASQEVFSGMK-CKDSVSWNSMINVYIQNGKMGDSLKVFENM-- 314

Query: 449 TGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPS------------------ 490
             +  D  T+ +I+ +C H+   N GL + ++M  E  V P                   
Sbjct: 315 --KARDIITWNTIIASCVHSEDCNLGLRMISRMRTEG-VTPDMATMLSILPVCSLLAAKR 371

Query: 491 --QEHYGCV---------------VDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGC 533
             +E +GC+               +++ ++ G L + S    KL++      W AL+S C
Sbjct: 372 QGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRN-SFQVFKLMKTKDVVTWTALISAC 430

Query: 534 VLH 536
            ++
Sbjct: 431 GMY 433



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 145/314 (46%), Gaps = 59/314 (18%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM- 62
           D Y  + L+  Y +   + +A  +F+E+P ++VVSW+ +I GY+ NG+  ++++ +    
Sbjct: 149 DLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYQSI 208

Query: 63  -----MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------ 105
                M++   P+  T+  +L A   L +LE  + +H  M+  G E D            
Sbjct: 209 KLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYA 268

Query: 106 ----------LFEGLKNPYLVSCNAIVAGFINN-------KLFQQ--------------- 133
                     +F G+K    VS N+++  +I N       K+F+                
Sbjct: 269 KCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFENMKARDIITWNTIIAS 328

Query: 134 ---------AVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILD 184
                     + + +  R  G+ P+  TML+++  C  L ++   + IHG   KLGL  D
Sbjct: 329 CVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESD 388

Query: 185 VSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRK 244
           V V N +++MYS    L  + Q+F+ M+ KDV++WT ++     +     A++ F EM  
Sbjct: 389 VPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEA 448

Query: 245 SRIICDTVALLNLI 258
           + I+ D VA + +I
Sbjct: 449 AGIVPDHVAFVAII 462



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/222 (21%), Positives = 100/222 (45%), Gaps = 28/222 (12%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C D  + + +++ Y ++GK+ ++  +F+ +  +++++W+ +I     +      ++  S 
Sbjct: 285 CKDSVSWNSMINVYIQNGKMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISR 344

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------- 105
           M   G+ P+  TM+ +L   + L      + IHG + K GLESD                
Sbjct: 345 MRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGS 404

Query: 106 ------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                 +F+ +K   +V+  A+++        ++AV  F     +G+VP+ V  + +I  
Sbjct: 405 LRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFA 464

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDL 201
           C   G   L E   GL     +  D  +   + + Y+C++DL
Sbjct: 465 CSHSG---LVE--EGLNYFHRMKKDYKIEPRI-EHYACVVDL 500


>gi|302767396|ref|XP_002967118.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
 gi|300165109|gb|EFJ31717.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
          Length = 903

 Score =  232 bits (592), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 161/552 (29%), Positives = 268/552 (48%), Gaps = 38/552 (6%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           LL  Y   G +  A  LF+ + E+++VSW+  I   + +G  + +++ F  M L G+ P 
Sbjct: 169 LLHIYGSCGCVASAMLLFERM-ERDLVSWNAAIAANAQSGDLDMALELFQRMQLEGVRPA 227

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------------FE 108
             T+V  L   A ++    AR+IH ++ + GLE  L                      F+
Sbjct: 228 RITLVITLSVCAKIRQ---ARAIHSIVRESGLEQTLVVSTALASAYARLGHLDQAKEVFD 284

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
                 +VS NA++  +  +    +A LLF      G+ P+ VT++    GC +L     
Sbjct: 285 RAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGIPPSKVTLVNASTGCSSL---RF 341

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
             +IH   ++ GL  D+ + N++LDMY+     + A  +F  +   + +SW  M+     
Sbjct: 342 GRMIHACALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFEGIP-GNAVSWNTMIAGSSQ 400

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKR----GKQLHAQVVLGGLQS 284
                 AL++F+ M+   +       LNL+   A   +  R    G++LH+++V  G  S
Sbjct: 401 KGQMKRALELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYAS 460

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQ---ITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           E  +  +++ MY+ CG +D + + F +        +VSW AIIS   Q+G  + AL  F 
Sbjct: 461 EPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALGFFR 520

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           +M      + + IT V++L A    AAL   + +H     +G      V   L S Y +C
Sbjct: 521 RMDLHGV-APNQITCVAVLDACAGAAALTEGVIVHDHLRHSGMESNVFVATALASMYGRC 579

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G+++ A  +FE++   RDVV +N +I  Y  NG    AL L+ +M + G  PD  +++S+
Sbjct: 580 GSLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGEALKLFWRMQQEGSRPDEQSFVSV 639

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L+AC H GL ++G  IF  M +   + PS++HY C VD+L RAG L+DA  L   +    
Sbjct: 640 LSACSHGGLADEGWEIFRSMRQSYGIAPSEDHYACAVDVLGRAGWLADAEELIRCMDVKP 699

Query: 522 GPNIWRALLSGC 533
              +W+ LL  C
Sbjct: 700 TVLVWKTLLGAC 711



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 132/498 (26%), Positives = 232/498 (46%), Gaps = 35/498 (7%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           LL  Y K   + + E +F  +  ++  SW+ +I  Y+ +G  ++++  F  M   G+  +
Sbjct: 68  LLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITAYTEHGQAKRAIWMFHRMQQEGVRCD 127

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFE 108
           + T + VL A A L +L   RSIH  +V+ GLE                        LFE
Sbjct: 128 AVTFLAVLKACARLGDLSQGRSIHAWIVESGLEGKSVLANLLLHIYGSCGCVASAMLLFE 187

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            ++   LVS NA +A    +     A+ LF   +  G+ P  +T++  +  C  +     
Sbjct: 188 RMERD-LVSWNAAIAANAQSGDLDMALELFQRMQLEGVRPARITLVITLSVCAKIRQ--- 243

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
              IH +  + GL   + V+ ++   Y+ L  LD A ++F     +DV+SW  M+G +  
Sbjct: 244 ARAIHSIVRESGLEQTLVVSTALASAYARLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQ 303

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
             +  +A  +F  M    I    V L+N    +     L+ G+ +HA  +  GL  ++ L
Sbjct: 304 HGHMSEAALLFARMLHEGIPPSKVTLVN---ASTGCSSLRFGRMIHACALEKGLDRDIVL 360

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
            N+++ MY++CG  + +R +F  I   + VSW  +I+G  Q G  + AL  F +M+ E  
Sbjct: 361 GNALLDMYTRCGSPEEARHLFEGIPGNA-VSWNTMIAGSSQKGQMKRALELFQRMQLEGM 419

Query: 349 DSVDSI---TLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
             V +     L ++ +   E  A+    +LH      G+    ++   ++  Y+ CG +D
Sbjct: 420 APVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCGAID 479

Query: 406 LAYIVFEE--MGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
            A   F+   M    DVVSWN II     +GHG+ AL  + +M   G  P+  T +++L+
Sbjct: 480 EAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLD 539

Query: 464 ACGHAGLTNDGLVIFNQM 481
           AC  A    +G+++ + +
Sbjct: 540 ACAGAAALTEGVIVHDHL 557



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 113/411 (27%), Positives = 198/411 (48%), Gaps = 30/411 (7%)

Query: 74  MVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYL------------------ 115
           +V +L AA   + L   R IH  +V  GLE +L   L   YL                  
Sbjct: 32  LVRLLRAAGDDRLLSQGRRIHARIVSLGLEEELGNHLLRLYLKCESLGDVEEVFSRLEVR 91

Query: 116 --VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIH 173
              S   I+  +  +   ++A+ +F+  +  G+  +AVT L V++ C  LG  +    IH
Sbjct: 92  DEASWTTIITAYTEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIH 151

Query: 174 GLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAG 233
              ++ GL     + N +L +Y     + +A+ +F  ME +D++SW   +          
Sbjct: 152 AWIVESGLEGKSVLANLLLHIYGSCGCVASAMLLFERME-RDLVSWNAAIAANAQSGDLD 210

Query: 234 DALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSII 293
            AL++F+ M+   +    + L+  +SV A    +++ + +H+ V   GL+  L +S ++ 
Sbjct: 211 MALELFQRMQLEGVRPARITLVITLSVCA---KIRQARAIHSIVRESGLEQTLVVSTALA 267

Query: 294 AMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDS 353
           + Y++ G LD ++ VF++  E+ +VSW A++  Y Q+G   EA   F +M  E       
Sbjct: 268 SAYARLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGIPP--- 324

Query: 354 ITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEE 413
            + V+++ AS   ++L     +H  A E G  R   + N L+  Y++CG+ + A  +FE 
Sbjct: 325 -SKVTLVNASTGCSSLRFGRMIHACALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFE- 382

Query: 414 MGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
            G   + VSWNT+I G    G  + AL L+ +M   G  P  +TYL++L A
Sbjct: 383 -GIPGNAVSWNTMIAGSSQKGQMKRALELFQRMQLEGMAPVRATYLNLLEA 432



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 125/519 (24%), Positives = 234/519 (45%), Gaps = 65/519 (12%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ L S Y + G + +A+ +FD   E++VVSW+ ++  Y+ +G   ++   F+ M+  G+
Sbjct: 263 STALASAYARLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGI 322

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
            P+  T+V    A+ G  +L   R IH   ++ GL+ D                      
Sbjct: 323 PPSKVTLVN---ASTGCSSLRFGRMIHACALEKGLDRDIVLGNALLDMYTRCGSPEEARH 379

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA--L 163
           LFEG+     VS N ++AG       ++A+ LF   +  G+ P   T L ++    +   
Sbjct: 380 LFEGIPGN-AVSWNTMIAGSSQKGQMKRALELFQRMQLEGMAPVRATYLNLLEAVASNPE 438

Query: 164 GSRALCE--LIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFRE--MECK-DVIS 218
            +RA+ E   +H   +  G   + ++  +V+ MY+    +D A   F+   ME + DV+S
Sbjct: 439 EARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVS 498

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           W  ++       +   AL  FR M    +  + +  + ++   A    L  G  +H  + 
Sbjct: 499 WNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGVIVHDHLR 558

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISGYVQNGCAREAL 337
             G++S + ++ ++ +MY +CG L+S+R +F ++  E+ +V + A+I+ Y QNG A EAL
Sbjct: 559 HSGMESNVFVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGEAL 618

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN----- 392
             F +M+QE +   D  + VS+L+A             HG   + G+  +RS++      
Sbjct: 619 KLFWRMQQEGSRP-DEQSFVSVLSACS-----------HGGLADEGWEIFRSMRQSYGIA 666

Query: 393 -------CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII---YGYGVNGHGETALAL 442
                  C +    + G +  A  +   M     V+ W T++     Y     G  A ++
Sbjct: 667 PSEDHYACAVDVLGRAGWLADAEELIRCMDVKPTVLVWKTLLGACRKYRDVDRGRLANSM 726

Query: 443 YHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQM 481
             ++    +  D S Y+ + N    AG  ++   +  +M
Sbjct: 727 VREL----DPGDESAYVVLSNILAGAGKWDEAAEVRTEM 761



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 91/294 (30%), Positives = 149/294 (50%), Gaps = 8/294 (2%)

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           IH   + LGL  +  + N +L +Y     L    ++F  +E +D  SWT ++  + +   
Sbjct: 51  IHARIVSLGL--EEELGNHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITAYTEHGQ 108

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
           A  A+ +F  M++  + CD V  L ++   A LGDL +G+ +HA +V  GL+ +  L+N 
Sbjct: 109 AKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLEGKSVLANL 168

Query: 292 IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
           ++ +Y  CG + S+  +F ++ E+ LVSW A I+   Q+G    AL  F +M+ E     
Sbjct: 169 LLHIYGSCGCVASAMLLFERM-ERDLVSWNAAIAANAQSGDLDMALELFQRMQLEGVRPA 227

Query: 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVF 411
             ITLV  L+     A +     +H I  E+G  +   V   L S+Y++ G++D A  VF
Sbjct: 228 -RITLVITLSV---CAKIRQARAIHSIVRESGLEQTLVVSTALASAYARLGHLDQAKEVF 283

Query: 412 EEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
           +     RDVVSWN ++  Y  +GH   A  L+ +M   G  P   T ++    C
Sbjct: 284 DRAAE-RDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGIPPSKVTLVNASTGC 336


>gi|356518094|ref|XP_003527718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g04860-like [Glycine max]
          Length = 714

 Score =  232 bits (592), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 158/550 (28%), Positives = 262/550 (47%), Gaps = 30/550 (5%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y ++ L+  Y K G    A  LF+++P  +VVSW+++I GYS +G    +++ F HM+  
Sbjct: 79  YVNTALIDFYMKLGFTTHARQLFEDLPSADVVSWNVLICGYSQHGHPHDALQLFVHMLRE 138

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-------------------- 105
              PN  T+  +L +    +     RS+H   +K GL  D                    
Sbjct: 139 SFRPNQTTIASLLPSCGRRELFLQGRSVHAFGIKAGLGLDPQLSNALTSMYAKCDDLEAS 198

Query: 106 --LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
             LF+ +    ++S N ++  +  N    +AVL F      G  P+ VTM+ +      +
Sbjct: 199 QLLFQEMGEKNVISWNTMIGAYGQNGFEDKAVLCFKEMLKEGWQPSPVTMMNL------M 252

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
            + A+ E +H   IK G   D SV  S++ +Y+     D A  ++     KD+IS T ++
Sbjct: 253 SANAVPETVHCYIIKCGFTGDASVVTSLVCLYAKQGFTDMAKLLYECYPTKDLISLTGII 312

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
             + +      A++ F +  K  I  D VAL++++   +       G   H   +  GL 
Sbjct: 313 SSYSEKGEVESAVECFIQTLKLDIKPDAVALISVLHGISDPSHFAIGCAFHGYGLKNGLT 372

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
           ++  ++N +I+ YS+  ++ ++ S+F   +EK L++W ++ISG VQ G + +A+  F +M
Sbjct: 373 NDCLVANGLISFYSRFDEILAALSLFFDRSEKPLITWNSMISGCVQAGKSSDAMELFCQM 432

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
                   D+IT+ S+L+   +L  L I   LHG                LI  Y+KCG 
Sbjct: 433 NMCGQKP-DAITIASLLSGCCQLGYLRIGETLHGYILRNNVKVEDFTGTALIDMYTKCGR 491

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           +D A  +F  +     +V+WN+II GY + G    A   + K+ E G  PD  T+L +L 
Sbjct: 492 LDYAEKIFYSIND-PCLVTWNSIISGYSLYGLEHKAFGCFSKLQEQGLEPDKITFLGVLA 550

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
           AC H GL   G+  F  M +E  + P+ +HY C+V LL RAG   +A  +   +      
Sbjct: 551 ACTHGGLVYAGMEYFRIMRKEYGLMPTLQHYACIVGLLGRAGLFKEAIEIINNMEIRPDS 610

Query: 524 NIWRALLSGC 533
            +W ALLS C
Sbjct: 611 AVWGALLSAC 620



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 129/486 (26%), Positives = 221/486 (45%), Gaps = 65/486 (13%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +DP  S+ L S Y K   ++ ++ LF E+ EKNV+SW+ +I  Y  NGF +K++  F  M
Sbjct: 177 LDPQLSNALTSMYAKCDDLEASQLLFQEMGEKNVISWNTMIGAYGQNGFEDKAVLCFKEM 236

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
           +  G  P+  TM+ ++ A A      +  ++H  ++K G   D                 
Sbjct: 237 LKEGWQPSPVTMMNLMSANA------VPETVHCYIIKCGFTGDASVVTSLVCLYAKQGFT 290

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                L+E      L+S   I++ +      + AV  F       + P+AV +++V+ G 
Sbjct: 291 DMAKLLYECYPTKDLISLTGIISSYSEKGEVESAVECFIQTLKLDIKPDAVALISVLHGI 350

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
                 A+    HG  +K GL  D  V N ++  YS   ++ AA+ +F +   K +I+W 
Sbjct: 351 SDPSHFAIGCAFHGYGLKNGLTNDCLVANGLISFYSRFDEILAALSLFFDRSEKPLITWN 410

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+   V    + DA+++F +M       D + + +L+S    LG L+ G+ LH  ++  
Sbjct: 411 SMISGCVQAGKSSDAMELFCQMNMCGQKPDAITIASLLSGCCQLGYLRIGETLHGYILRN 470

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
            ++ E     ++I MY+KCG LD +  +F  I +  LV+W +IISGY   G   +A   F
Sbjct: 471 NVKVEDFTGTALIDMYTKCGRLDYAEKIFYSINDPCLVTWNSIISGYSLYGLEHKAFGCF 530

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            K+ QE+    D IT + +L A             HG    AG   +R            
Sbjct: 531 SKL-QEQGLEPDKITFLGVLAAC-----------THGGLVYAGMEYFR------------ 566

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV-PDSSTYL 459
                   I+ +E G +  +  +  I+   G  G  + A+ + + M    E+ PDS+ + 
Sbjct: 567 --------IMRKEYGLMPTLQHYACIVGLLGRAGLFKEAIEIINNM----EIRPDSAVWG 614

Query: 460 SILNAC 465
           ++L+AC
Sbjct: 615 ALLSAC 620



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 114/439 (25%), Positives = 202/439 (46%), Gaps = 54/439 (12%)

Query: 134 AVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL---------CELIHGLTIKLGLILD 184
           A+L+F     S   PN +T   +I+ C++  S               I    +K G+   
Sbjct: 18  ALLIFRQLLQSSANPNHLTFSLLIKACLSSSSSFSRGSPTAWLQVNQIQTQLLKRGIDQF 77

Query: 185 VSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRK 244
           + VN +++D Y  L     A Q+F ++   DV+SW  ++  +    +  DAL++F  M +
Sbjct: 78  LYVNTALIDFYMKLGFTTHARQLFEDLPSADVVSWNVLICGYSQHGHPHDALQLFVHMLR 137

Query: 245 SRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDS 304
                +   + +L+          +G+ +HA  +  GL  + +LSN++ +MY+KC DL++
Sbjct: 138 ESFRPNQTTIASLLPSCGRRELFLQGRSVHAFGIKAGLGLDPQLSNALTSMYAKCDDLEA 197

Query: 305 SRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASG 364
           S+ +F ++ EK+++SW  +I  Y QNG   +A+  F +M +E       +T++++++A+ 
Sbjct: 198 SQLLFQEMGEKNVISWNTMIGAYGQNGFEDKAVLCFKEMLKEGWQP-SPVTMMNLMSANA 256

Query: 365 ELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWN 424
                 +   +H    + GF    SV   L+  Y+K G  D+A +++E     +D++S  
Sbjct: 257 ------VPETVHCYIIKCGFTGDASVVTSLVCLYAKQGFTDMAKLLYECYP-TKDLISLT 309

Query: 425 TIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN--------ACGHA-------- 468
            II  Y   G  E+A+  + +  +    PD+   +S+L+        A G A        
Sbjct: 310 GIISSYSEKGEVESAVECFIQTLKLDIKPDAVALISVLHGISDPSHFAIGCAFHGYGLKN 369

Query: 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI-WR 527
           GLTND LV  N +I           Y    ++LA      D S           P I W 
Sbjct: 370 GLTNDCLVA-NGLI---------SFYSRFDEILAALSLFFDRSE---------KPLITWN 410

Query: 528 ALLSGCVLHVGRFQDAEAL 546
           +++SGCV   G+  DA  L
Sbjct: 411 SMISGCV-QAGKSSDAMEL 428


>gi|413938143|gb|AFW72694.1| hypothetical protein ZEAMMB73_533387 [Zea mays]
          Length = 663

 Score =  232 bits (592), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 168/560 (30%), Positives = 279/560 (49%), Gaps = 39/560 (6%)

Query: 6   YNSSKLL-SNYFKSGKIKEAENLFDEIPEKNVVSWS-IVIHGYSINGFHEKSMKAFSHMM 63
           Y+S  LL  +Y   G   +A+NL  ++P+   VS S  ++  YS  GFH +++  +S M 
Sbjct: 46  YDSPHLLLYSYCACGCPFDAQNLLAQMPQPASVSVSNTLLRSYSGLGFHRQALALYSQMR 105

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF---------------- 107
               L  +F       A AGL+     R++HG  +  G  SD +                
Sbjct: 106 HFDHLTFTFAAK----ACAGLRLRRHGRAVHGRALAAGFGSDAYVQNAIVSMYMRCRDVA 161

Query: 108 ------EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                   L +   VS N ++ G + +   ++A+ +F      G+  +  ++++V+  C 
Sbjct: 162 AAEAVFVALPSRTTVSWNTVITGCVKDGRAERALEVFETMVDRGVCIDRASVVSVLPACA 221

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC-KDVISWT 220
                     +H L +  GL   V+V N+++DMY     L+ A ++F E    KDV+SWT
Sbjct: 222 QARDLHTGRAVHRLAVVRGLGKYVAVKNALIDMYGKCGSLEDARRVFDEDSYDKDVVSWT 281

Query: 221 RMMGLFVDFEYAGDALKIFREMR-KSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
            M+G +V  ++A  A  +  EM   S    + V + +L+S  A L   K  K  HA  + 
Sbjct: 282 VMIGAYVLNDHASKAFALGSEMLVSSEAQPNAVTMAHLLSACASLLSGKHAKCTHALCIR 341

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK---SLVSWTAIISGYVQNGCAREA 336
            GL S++ +  +++  Y+KCG +     V + + EK      +W A ISGY Q    ++A
Sbjct: 342 LGLGSDIVVETALVDCYAKCGYM----GVIDMVVEKGSRRTETWNAAISGYTQRDQGKKA 397

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
           L  F +M  E     DS T+ S++ A  E A L     +H      G      +   LI 
Sbjct: 398 LALFKRMLAESVRP-DSATMASVIPAYAESADLVQANNIHCCLLVRGCLVSTDIATGLID 456

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
            Y+K G++ +A+ +F+ +   +DVV+W T+I GYG++GH +TA+ LY +M E G +P++ 
Sbjct: 457 LYAKAGDLGVAWELFQCLPE-KDVVAWTTVIAGYGMHGHAQTAMLLYSRMVELGVMPNTV 515

Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK 516
           T  S+L++C HAG+ ++GL +FN M   + + P+ EHY C+VD+L RAG + +A      
Sbjct: 516 TIASLLHSCSHAGMVDEGLRLFNDMHGVHGLMPNAEHYLCLVDMLGRAGRIEEAYRRIED 575

Query: 517 LLEGMGPNIWRALLSGCVLH 536
           +      ++W +LL  CVLH
Sbjct: 576 MPFEPTVSVWSSLLGACVLH 595



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 110/452 (24%), Positives = 207/452 (45%), Gaps = 33/452 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + ++S Y +   +  AE +F  +P +  VSW+ VI G   +G  E++++ F  M+
Sbjct: 143 DAYVQNAIVSMYMRCRDVAAAEAVFVALPSRTTVSWNTVITGCVKDGRAERALEVFETMV 202

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES---------DLF------- 107
             G+  +  ++V VL A A  ++L   R++H L V  GL           D++       
Sbjct: 203 DRGVCIDRASVVSVLPACAQARDLHTGRAVHRLAVVRGLGKYVAVKNALIDMYGKCGSLE 262

Query: 108 -------EGLKNPYLVSCNAIVAGFINNKLFQQAVLL-FNFFRGSGLVPNAVTMLTVIRG 159
                  E   +  +VS   ++  ++ N    +A  L       S   PNAVTM  ++  
Sbjct: 263 DARRVFDEDSYDKDVVSWTVMIGAYVLNDHASKAFALGSEMLVSSEAQPNAVTMAHLLSA 322

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C +L S    +  H L I+LGL  D+ V  +++D Y+    +   I +  E   +   +W
Sbjct: 323 CASLLSGKHAKCTHALCIRLGLGSDIVVETALVDCYAKCGYM-GVIDMVVEKGSRRTETW 381

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
              +  +   +    AL +F+ M    +  D+  + ++I   A   DL +   +H  +++
Sbjct: 382 NAAISGYTQRDQGKKALALFKRMLAESVRPDSATMASVIPAYAESADLVQANNIHCCLLV 441

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G      ++  +I +Y+K GDL  +  +F  + EK +V+WT +I+GY  +G A+ A+  
Sbjct: 442 RGCLVSTDIATGLIDLYAKAGDLGVAWELFQCLPEKDVVAWTTVIAGYGMHGHAQTAMLL 501

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQL----HGIAFEAGFPRYRSVQNCLI 395
           + +M  E     +++T+ S+L +      ++  L+L    HG+    G         CL+
Sbjct: 502 YSRM-VELGVMPNTVTIASLLHSCSHAGMVDEGLRLFNDMHGV---HGLMPNAEHYLCLV 557

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
               + G ++ AY   E+M F   V  W++++
Sbjct: 558 DMLGRAGRIEEAYRRIEDMPFEPTVSVWSSLL 589


>gi|224096620|ref|XP_002310674.1| predicted protein [Populus trichocarpa]
 gi|222853577|gb|EEE91124.1| predicted protein [Populus trichocarpa]
          Length = 908

 Score =  232 bits (592), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 157/556 (28%), Positives = 283/556 (50%), Gaps = 33/556 (5%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ L+S +   G ++EA  +F  + E + +SW+ +I  Y  NG  ++S++ FS M     
Sbjct: 169 ANSLISMFGYFGSVEEACYVFSGMDEHDTISWNSMIAAYIRNGLCKESLRCFSWMFRVHK 228

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL--------------------- 106
             NS T+  +L     + NL+  R IH L++KFG  S++                     
Sbjct: 229 EINSTTLSTMLAGCGSVDNLKWGRGIHSLVLKFGWNSNVCASNTLITMYSDAGRCEDAEL 288

Query: 107 -FEGLKNPYLVSCNAIVAGFINN----KLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
            F+G+    ++S N+++A +  +       +    +F   RG+    N VT  + +  C 
Sbjct: 289 VFQGMVEKDMISWNSMMACYAQDGNCLDALKLLATMFYMRRGA----NYVTFTSALAACS 344

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
                   +++H L I +GL  +V V N+++ +Y+    +  A ++F+ M  +D ++W  
Sbjct: 345 DPEFATEGKILHALVIHVGLHENVIVGNALVTLYAKSGLMIEAKKVFQTMPKRDGVTWNA 404

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDL-KRGKQLHAQVVLG 280
           ++G   D E   +ALK F+ MR+  +  + + + N++       DL + G  +HA ++L 
Sbjct: 405 LIGGHADSEEPDEALKAFKLMREEGVPINYITISNVLGACLAPNDLLEHGMPIHAFIILT 464

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           G QS+  + NS+I MY+KCGDL+SS ++F+++T K+  +W A+++    +G   EAL   
Sbjct: 465 GFQSDEYVQNSLITMYAKCGDLNSSNNIFDRLTSKNASAWNAMMAANAHHGHMEEALKFL 524

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
           ++MR+   + VD  +    L A+ +LA LE   QLHG+A + G      V +  +  Y K
Sbjct: 525 LEMRRAGVN-VDEFSFSECLAAAAKLAILEEGQQLHGLAVKLGCDSNPFVASATMDMYGK 583

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CG +D    +       R  +SWN +   +  +G  E A   +H+M   G  PD  T++S
Sbjct: 584 CGEIDDVLRIIPR-PINRSRLSWNILTSSFSRHGFFEKAKETFHEMINLGVKPDHVTFVS 642

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           +L+AC H G+  +GL  ++ MI+E  +     H  C++DLL R+G  ++A     ++   
Sbjct: 643 LLSACSHGGMVEEGLAYYDSMIKEFGIPAKIGHCVCIIDLLGRSGRFAEAETFIKEMPVS 702

Query: 521 MGPNIWRALLSGCVLH 536
              ++WR+LL+ C  H
Sbjct: 703 PTDHVWRSLLAACKTH 718



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 115/436 (26%), Positives = 221/436 (50%), Gaps = 24/436 (5%)

Query: 122 VAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELI-----HGLT 176
           ++GF+    +++++  FN  R  G+ P+ + + +++  C     R+   LI     HG  
Sbjct: 1   MSGFVRAGSYRESMRFFNEMRDFGVKPSGIAVASLVTAC----ERSEWMLIEGVQVHGFI 56

Query: 177 IKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDAL 236
           +K+GL+ DV V  S++ +Y        A+++F+EM  K+V+SWT +M  +VD+      +
Sbjct: 57  VKVGLLSDVFVGTSLVHLYGNYGLAADAMKVFQEMIYKNVVSWTALMVAYVDYGEPSMVM 116

Query: 237 KIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMY 296
            I+R MR   + C+   + ++IS    L +   G Q+   V+  GL++ + ++NS+I+M+
Sbjct: 117 NIYRRMRSEGMSCNDNTMSSVISTCVSLENELLGYQVLGHVIKYGLETNVSVANSLISMF 176

Query: 297 SKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITL 356
              G ++ +  VF+ + E   +SW ++I+ Y++NG  +E+L  F  M +   + ++S TL
Sbjct: 177 GYFGSVEEACYVFSGMDEHDTISWNSMIAAYIRNGLCKESLRCFSWMFRVHKE-INSTTL 235

Query: 357 VSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGF 416
            ++L   G +  L+    +H +  + G+       N LI+ YS  G  + A +VF+ M  
Sbjct: 236 STMLAGCGSVDNLKWGRGIHSLVLKFGWNSNVCASNTLITMYSDAGRCEDAELVFQGM-V 294

Query: 417 LRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLV 476
            +D++SWN+++  Y  +G+   AL L   M       +  T+ S L AC       +G +
Sbjct: 295 EKDMISWNSMMACYAQDGNCLDALKLLATMFYMRRGANYVTFTSALAACSDPEFATEGKI 354

Query: 477 IFNQMI----EENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSG 532
           +   +I     EN +  +      +V L A++G + +A  +   + +  G   W AL+ G
Sbjct: 355 LHALVIHVGLHENVIVGN-----ALVTLYAKSGLMIEAKKVFQTMPKRDGVT-WNALIGG 408

Query: 533 CVLHVGRFQDAEALRS 548
              H    +  EAL++
Sbjct: 409 ---HADSEEPDEALKA 421



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 127/472 (26%), Positives = 225/472 (47%), Gaps = 29/472 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L+  Y   G   +A  +F E+  KNVVSW+ ++  Y   G     M  +  M 
Sbjct: 64  DVFVGTSLVHLYGNYGLAADAMKVFQEMIYKNVVSWTALMVAYVDYGEPSMVMNIYRRMR 123

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
             G+  N  TM  V+     L+N  L   + G ++K+GLE++                  
Sbjct: 124 SEGMSCNDNTMSSVISTCVSLENELLGYQVLGHVIKYGLETNVSVANSLISMFGYFGSVE 183

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +F G+     +S N+++A +I N L ++++  F++        N+ T+ T++ GC 
Sbjct: 184 EACYVFSGMDEHDTISWNSMIAAYIRNGLCKESLRCFSWMFRVHKEINSTTLSTMLAGCG 243

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
           ++ +      IH L +K G   +V  +N+++ MYS     + A  +F+ M  KD+ISW  
Sbjct: 244 SVDNLKWGRGIHSLVLKFGWNSNVCASNTLITMYSDAGRCEDAELVFQGMVEKDMISWNS 303

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           MM  +       DALK+   M   R   + V   + ++  +       GK LHA V+  G
Sbjct: 304 MMACYAQDGNCLDALKLLATMFYMRRGANYVTFTSALAACSDPEFATEGKILHALVIHVG 363

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           L   + + N+++ +Y+K G +  ++ VF  + ++  V+W A+I G+  +    EAL  F 
Sbjct: 364 LHENVIVGNALVTLYAKSGLMIEAKKVFQTMPKRDGVTWNALIGGHADSEEPDEALKAFK 423

Query: 342 KMRQEKTDSVDSITLVSILTASGELAA---LEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
            MR+E    ++ IT+ ++L A   LA    LE  + +H      GF     VQN LI+ Y
Sbjct: 424 LMREEGV-PINYITISNVLGAC--LAPNDLLEHGMPIHAFIILTGFQSDEYVQNSLITMY 480

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
           +KCG+++ +  +F+ +   ++  +WN ++     +GH E AL    +M   G
Sbjct: 481 AKCGDLNSSNNIFDRLT-SKNASAWNAMMAANAHHGHMEEALKFLLEMRRAG 531



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 120/452 (26%), Positives = 209/452 (46%), Gaps = 28/452 (6%)

Query: 45  GYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLEL-ARSIHGLMVKFGLE 103
           G+   G + +SM+ F+ M   G+ P+   +  ++ A    + + +    +HG +VK GL 
Sbjct: 3   GFVRAGSYRESMRFFNEMRDFGVKPSGIAVASLVTACERSEWMLIEGVQVHGFIVKVGLL 62

Query: 104 SDLFEGLKNPYL----------------------VSCNAIVAGFINNKLFQQAVLLFNFF 141
           SD+F G    +L                      VS  A++  +++       + ++   
Sbjct: 63  SDVFVGTSLVHLYGNYGLAADAMKVFQEMIYKNVVSWTALMVAYVDYGEPSMVMNIYRRM 122

Query: 142 RGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDL 201
           R  G+  N  TM +VI  CV+L +  L   + G  IK GL  +VSV NS++ M+     +
Sbjct: 123 RSEGMSCNDNTMSSVISTCVSLENELLGYQVLGHVIKYGLETNVSVANSLISMFGYFGSV 182

Query: 202 DAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVN 261
           + A  +F  M+  D ISW  M+  ++      ++L+ F  M +     ++  L  +++  
Sbjct: 183 EEACYVFSGMDEHDTISWNSMIAAYIRNGLCKESLRCFSWMFRVHKEINSTTLSTMLAGC 242

Query: 262 AILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWT 321
             + +LK G+ +H+ V+  G  S +  SN++I MYS  G  + +  VF  + EK ++SW 
Sbjct: 243 GSVDNLKWGRGIHSLVLKFGWNSNVCASNTLITMYSDAGRCEDAELVFQGMVEKDMISWN 302

Query: 322 AIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFE 381
           ++++ Y Q+G   +AL     M   +  + + +T  S L A  +         LH +   
Sbjct: 303 SMMACYAQDGNCLDALKLLATMFYMRRGA-NYVTFTSALAACSDPEFATEGKILHALVIH 361

Query: 382 AGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALA 441
            G      V N L++ Y+K G +  A  VF+ M   RD V+WN +I G+  +   + AL 
Sbjct: 362 VGLHENVIVGNALVTLYAKSGLMIEAKKVFQTMP-KRDGVTWNALIGGHADSEEPDEALK 420

Query: 442 LYHKMTETGEVPDSSTYLSILNACGHAGLTND 473
            +  M E G VP    Y++I N  G     ND
Sbjct: 421 AFKLMREEG-VP--INYITISNVLGACLAPND 449



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 121/510 (23%), Positives = 221/510 (43%), Gaps = 31/510 (6%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ L++ Y  +G+ ++AE +F  + EK+++SW+ ++  Y+ +G    ++K  + M     
Sbjct: 270 SNTLITMYSDAGRCEDAELVFQGMVEKDMISWNSMMACYAQDGNCLDALKLLATMFYMRR 329

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL--------------------- 106
             N  T    L A +  +     + +H L++  GL  ++                     
Sbjct: 330 GANYVTFTSALAACSDPEFATEGKILHALVIHVGLHENVIVGNALVTLYAKSGLMIEAKK 389

Query: 107 -FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
            F+ +     V+ NA++ G  +++   +A+  F   R  G+  N +T+  V+  C+A   
Sbjct: 390 VFQTMPKRDGVTWNALIGGHADSEEPDEALKAFKLMREEGVPINYITISNVLGACLA--P 447

Query: 166 RALCE---LIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
             L E    IH   I  G   D  V NS++ MY+   DL+++  IF  +  K+  +W  M
Sbjct: 448 NDLLEHGMPIHAFIILTGFQSDEYVQNSLITMYAKCGDLNSSNNIFDRLTSKNASAWNAM 507

Query: 223 MGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL 282
           M       +  +ALK   EMR++ +  D  +    ++  A L  L+ G+QLH   V  G 
Sbjct: 508 MAANAHHGHMEEALKFLLEMRRAGVNVDEFSFSECLAAAAKLAILEEGQQLHGLAVKLGC 567

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
            S   ++++ + MY KCG++D    +  +   +S +SW  + S + ++G   +A   F +
Sbjct: 568 DSNPFVASATMDMYGKCGEIDDVLRIIPRPINRSRLSWNILTSSFSRHGFFEKAKETFHE 627

Query: 343 MRQEKTDSVDSITLVSILTASGELAALEICLQLH-GIAFEAGFPRYRSVQNCLISSYSKC 401
           M        D +T VS+L+A      +E  L  +  +  E G P       C+I    + 
Sbjct: 628 MINLGVKP-DHVTFVSLLSACSHGGMVEEGLAYYDSMIKEFGIPAKIGHCVCIIDLLGRS 686

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G    A    +EM        W +++     +G+ E        + +  +  D S Y+  
Sbjct: 687 GRFAEAETFIKEMPVSPTDHVWRSLLAACKTHGNLELGRKAVENLLKL-DPSDDSAYVLY 745

Query: 462 LNACGHAGLTNDGLVIFNQM-IEENKVKPS 490
            N C   G   D   I  QM + + K KP+
Sbjct: 746 SNICATTGKWEDVEKIRRQMGLNKIKKKPA 775



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 82/179 (45%), Gaps = 22/179 (12%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + L++ Y K G +  + N+FD +  KN  +W+ ++   + +G  E+++K    M 
Sbjct: 469 DEYVQNSLITMYAKCGDLNSSNNIFDRLTSKNASAWNAMMAANAHHGHMEEALKFLLEMR 528

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLK------------ 111
            +G+  + F+    L AAA L  LE  + +HGL VK G +S+ F                
Sbjct: 529 RAGVNVDEFSFSECLAAAAKLAILEEGQQLHGLAVKLGCDSNPFVASATMDMYGKCGEID 588

Query: 112 ----------NPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                     N   +S N + + F  +  F++A   F+     G+ P+ VT ++++  C
Sbjct: 589 DVLRIIPRPINRSRLSWNILTSSFSRHGFFEKAKETFHEMINLGVKPDHVTFVSLLSAC 647



 Score = 46.2 bits (108), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 11/99 (11%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           +P+ +S  +  Y K G+I +   +      ++ +SW+I+   +S +GF EK+ + F  M+
Sbjct: 570 NPFVASATMDMYGKCGEIDDVLRIIPRPINRSRLSWNILTSSFSRHGFFEKAKETFHEMI 629

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL 102
             G+ P+  T V +L A +           HG MV+ GL
Sbjct: 630 NLGVKPDHVTFVSLLSACS-----------HGGMVEEGL 657


>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 751

 Score =  232 bits (592), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 143/435 (32%), Positives = 227/435 (52%), Gaps = 9/435 (2%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           LF+ +    +VS  +I+ GF +N  FQ+A+  F   R  G +     + +V++ C +LG+
Sbjct: 132 LFDKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLGA 191

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
                 +H L +K G   ++ V +++ DMYS   +L  A + F EM CKD + WT M+  
Sbjct: 192 IQFGTQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDG 251

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           FV       AL  + +M    +  D   L + +S  + L     GK LHA ++  G + E
Sbjct: 252 FVKNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSACSALKASSFGKSLHATILKLGFEYE 311

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEK--SLVSWTAIISGYVQNGCAREALNQFIKM 343
             + N++  MYSK GD+ S+ +VF QI     S+VS TAII GYV+     +AL+ F+ +
Sbjct: 312 TFIGNALTDMYSKSGDMVSASNVF-QIHSDCISIVSLTAIIDGYVEMDQIEKALSTFVDL 370

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
           R+   +  +  T  S++ A    A LE   QLHG   +  F R   V + L+  Y KCG 
Sbjct: 371 RRRGIEP-NEFTFTSLIKACANQAKLEHGSQLHGQVVKFNFKRDPFVSSTLVDMYGKCGL 429

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
            D +  +F+E+    D ++WNT++  +  +G G  A+  ++ M   G  P++ T++++L 
Sbjct: 430 FDHSIQLFDEIE-NPDEIAWNTLVGVFSQHGLGRNAIETFNGMIHRGLKPNAVTFVNLLK 488

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
            C HAG+  DGL  F+ M +   V P +EHY CV+DLL RAG L +A      +     P
Sbjct: 489 GCSHAGMVEDGLNYFSSMEKIYGVVPKEEHYSCVIDLLGRAGKLKEAEDFINNM--PFEP 546

Query: 524 NI--WRALLSGCVLH 536
           N+  W + L  C +H
Sbjct: 547 NVFGWCSFLGACKIH 561



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 109/462 (23%), Positives = 213/462 (46%), Gaps = 37/462 (8%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+  L+ Y K G++     LFD++ ++N+VSW+ +I G++ N   ++++ +F  M + G 
Sbjct: 113 SNHFLNLYSKCGELDYTIKLFDKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGE 172

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPY----------- 114
           +   F +  VL A   L  ++    +H L+VK G   +LF G  L + Y           
Sbjct: 173 IATQFALSSVLQACTSLGAIQFGTQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACK 232

Query: 115 ---------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
                     V   +++ GF+ N  F++A+  +       +  +   + + +  C AL +
Sbjct: 233 AFEEMPCKDAVLWTSMIDGFVKNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSACSALKA 292

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFR-EMECKDVISWTRMMG 224
            +  + +H   +KLG   +  + N++ DMYS   D+ +A  +F+   +C  ++S T ++ 
Sbjct: 293 SSFGKSLHATILKLGFEYETFIGNALTDMYSKSGDMVSASNVFQIHSDCISIVSLTAIID 352

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            +V+ +    AL  F ++R+  I  +     +LI   A    L+ G QLH QVV    + 
Sbjct: 353 GYVEMDQIEKALSTFVDLRRRGIEPNEFTFTSLIKACANQAKLEHGSQLHGQVVKFNFKR 412

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           +  +S++++ MY KCG  D S  +F++I     ++W  ++  + Q+G  R A+  F  M 
Sbjct: 413 DPFVSSTLVDMYGKCGLFDHSIQLFDEIENPDEIAWNTLVGVFSQHGLGRNAIETFNGMI 472

Query: 345 QEKTDSVDSITLVSILTASGELAALEICL-------QLHGIAFEAGFPRYRSVQNCLISS 397
                  +++T V++L        +E  L       +++G+      P+     +C+I  
Sbjct: 473 HRGLKP-NAVTFVNLLKGCSHAGMVEDGLNYFSSMEKIYGVV-----PKEEHY-SCVIDL 525

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETA 439
             + G +  A      M F  +V  W + +    ++G  E A
Sbjct: 526 LGRAGKLKEAEDFINNMPFEPNVFGWCSFLGACKIHGDMERA 567



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 112/395 (28%), Positives = 189/395 (47%), Gaps = 7/395 (1%)

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           +H + I+ G + +  ++N  L++YS   +LD  I++F +M  ++++SWT ++  F     
Sbjct: 97  LHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYTIKLFDKMSQRNMVSWTSIITGFAHNSR 156

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
             +AL  F +MR    I    AL +++     LG ++ G Q+H  VV  G   EL + ++
Sbjct: 157 FQEALSSFCQMRIEGEIATQFALSSVLQACTSLGAIQFGTQVHCLVVKCGFGCELFVGSN 216

Query: 292 IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
           +  MYSKCG+L  +   F ++  K  V WT++I G+V+NG  ++AL  ++KM  +    +
Sbjct: 217 LTDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDGFVKNGDFKKALTAYMKMVTDDV-FI 275

Query: 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVF 411
           D   L S L+A   L A      LH    + GF     + N L   YSK G++  A  VF
Sbjct: 276 DQHVLCSTLSACSALKASSFGKSLHATILKLGFEYETFIGNALTDMYSKSGDMVSASNVF 335

Query: 412 EEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLT 471
           +       +VS   II GY      E AL+ +  +   G  P+  T+ S++ AC +    
Sbjct: 336 QIHSDCISIVSLTAIIDGYVEMDQIEKALSTFVDLRRRGIEPNEFTFTSLIKACANQAKL 395

Query: 472 NDGLVIFNQMIEEN-KVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALL 530
             G  +  Q+++ N K  P       +VD+  + G L D S      +E      W  L+
Sbjct: 396 EHGSQLHGQVVKFNFKRDPFVS--STLVDMYGKCG-LFDHSIQLFDEIENPDEIAWNTLV 452

Query: 531 SGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFLN 565
            G     G  ++A    +G   +G +K   ++F+N
Sbjct: 453 -GVFSQHGLGRNAIETFNGMIHRG-LKPNAVTFVN 485



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 79/216 (36%), Positives = 119/216 (55%), Gaps = 2/216 (0%)

Query: 250 DTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVF 309
           DT  + +LI   A   +L +GKQLHA ++ GG      LSN  + +YSKCG+LD +  +F
Sbjct: 74  DTKTVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYTIKLF 133

Query: 310 NQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAAL 369
           ++++++++VSWT+II+G+  N   +EAL+ F +MR E  +      L S+L A   L A+
Sbjct: 134 DKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIE-GEIATQFALSSVLQACTSLGAI 192

Query: 370 EICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYG 429
           +   Q+H +  + GF     V + L   YSKCG +  A   FEEM   +D V W ++I G
Sbjct: 193 QFGTQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMP-CKDAVLWTSMIDG 251

Query: 430 YGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
           +  NG  + AL  Y KM       D     S L+AC
Sbjct: 252 FVKNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSAC 287



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 7/103 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           DP+ SS L+  Y K G    +  LFDEI   + ++W+ ++  +S +G    +++ F+ M+
Sbjct: 413 DPFVSSTLVDMYGKCGLFDHSIQLFDEIENPDEIAWNTLVGVFSQHGLGRNAIETFNGMI 472

Query: 64  LSGLLPNSFTMVGVLVAAA-------GLQNLELARSIHGLMVK 99
             GL PN+ T V +L   +       GL        I+G++ K
Sbjct: 473 HRGLKPNAVTFVNLLKGCSHAGMVEDGLNYFSSMEKIYGVVPK 515


>gi|255575102|ref|XP_002528456.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532132|gb|EEF33939.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 664

 Score =  232 bits (592), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 151/506 (29%), Positives = 267/506 (52%), Gaps = 25/506 (4%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ L+  Y K G I  A  +F+ +   N +SW  ++ GY+ N    + +  F +M  +  
Sbjct: 151 SNGLIDMYSKCGDIYVACQVFELMQHTNDISWRTMMAGYAHNECFFEVLDLFDYMKKNNF 210

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
             N  ++   L+AAA +++    + I     + G++SD                      
Sbjct: 211 RLNKVSVASALLAAADVRDSGRGKEICEFARQQGIDSDVSITTAMMTMYAKCGNLDKAKQ 270

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           LF+GLK   LV+ +AI+   + ++  + A+ LF   +   L  N VT+L+V+  C  L S
Sbjct: 271 LFQGLKVKDLVAWSAIIDALVQSRYAEDALSLFRDMQNDFLKANNVTLLSVLPACADLMS 330

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
             L + +H   IK     D+ +  S++ MY+     ++A+ +F  M C+D+++   ++  
Sbjct: 331 LRLGKSVHCYAIKADFDSDILIGTSLVSMYAKCGLFNSALTVFNRMPCEDIVTCNALINE 390

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +        A+++F  ++ S I+ D+  ++ L+SV  +L DL++G  +H  ++  G  S 
Sbjct: 391 YSQIGDPYHAMEVFHVVQISEILPDSRTMVCLLSVCILLHDLEQGSCIHGLIIKFGFDSH 450

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
             + NS+I MY+KCG L ++  +F +    K  VSW A+I+GYV N  A+EA + F +M+
Sbjct: 451 CNVKNSLIDMYAKCGSLANAEFLFKRTEFTKDEVSWNALIAGYVHNEHAKEAFSLFCQMK 510

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
            E     + +T VS+  A   L+AL+  + LH      GF     V NCLI  Y+KCG +
Sbjct: 511 LEHFQP-NLVTFVSVFPAVARLSALKEGMALHACIMRMGFQSNVLVGNCLIDMYAKCGQL 569

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
             +  +F EM   ++ VSWN ++ GY V+G G  A+ L+  M ++    DS ++LS+L+A
Sbjct: 570 HNSEHLFHEMKN-KNAVSWNVMLAGYAVHGQGYHAIELFSLMQKSHIQADSLSFLSVLSA 628

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPS 490
           C H+GL ++G  IF+ M +E++++P+
Sbjct: 629 CRHSGLIDEGRKIFDSMYKEHQLEPA 654



 Score =  226 bits (576), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 156/585 (26%), Positives = 306/585 (52%), Gaps = 25/585 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L++ Y K G  + A+ +FD++P+++VV+W+ +I G S +   ++++K    M 
Sbjct: 48  DVFVGTALVNMYSKMGDPQLAKGVFDKMPKRDVVTWNAMIFGLSHSVAPQEALKLVKSMQ 107

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES------------------- 104
           L+G  P+  T+V ++ A + L +++  RS+HG +++ G  +                   
Sbjct: 108 LAGQEPDFVTIVNLVPAVSRLADIDACRSLHGYVIRRGFPAVFSNGLIDMYSKCGDIYVA 167

Query: 105 -DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
             +FE +++   +S   ++AG+ +N+ F + + LF++ + +    N V++ + +     +
Sbjct: 168 CQVFELMQHTNDISWRTMMAGYAHNECFFEVLDLFDYMKKNNFRLNKVSVASALLAAADV 227

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
                 + I     + G+  DVS+  +++ MY+   +LD A Q+F+ ++ KD+++W+ ++
Sbjct: 228 RDSGRGKEICEFARQQGIDSDVSITTAMMTMYAKCGNLDKAKQLFQGLKVKDLVAWSAII 287

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
              V   YA DAL +FR+M+   +  + V LL+++   A L  L+ GK +H   +     
Sbjct: 288 DALVQSRYAEDALSLFRDMQNDFLKANNVTLLSVLPACADLMSLRLGKSVHCYAIKADFD 347

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
           S++ +  S+++MY+KCG  +S+ +VFN++  + +V+  A+I+ Y Q G    A+  F  +
Sbjct: 348 SDILIGTSLVSMYAKCGLFNSALTVFNRMPCEDIVTCNALINEYSQIGDPYHAMEVF-HV 406

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
            Q      DS T+V +L+    L  LE    +HG+  + GF  + +V+N LI  Y+KCG+
Sbjct: 407 VQISEILPDSRTMVCLLSVCILLHDLEQGSCIHGLIIKFGFDSHCNVKNSLIDMYAKCGS 466

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           +  A  +F+   F +D VSWN +I GY  N H + A +L+ +M      P+  T++S+  
Sbjct: 467 LANAEFLFKRTEFTKDEVSWNALIAGYVHNEHAKEAFSLFCQMKLEHFQPNLVTFVSVFP 526

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
           A        +G+ + +  I     + +     C++D+ A+ G L ++  L  + ++    
Sbjct: 527 AVARLSALKEGMAL-HACIMRMGFQSNVLVGNCLIDMYAKCGQLHNSEHLFHE-MKNKNA 584

Query: 524 NIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFLNSTS 568
             W  +L+G  +H G+   A  L S  QK   I+   +SFL+  S
Sbjct: 585 VSWNVMLAGYAVH-GQGYHAIELFSLMQKSH-IQADSLSFLSVLS 627



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 140/496 (28%), Positives = 240/496 (48%), Gaps = 37/496 (7%)

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG---------LKNPYL- 115
           GL P+  T   VL A  G    +    IH  +V  GLESD+F G         + +P L 
Sbjct: 9   GLEPDKCTFTFVLKACTGGLEFKEGILIHRGIVFKGLESDVFVGTALVNMYSKMGDPQLA 68

Query: 116 ------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
                       V+ NA++ G  ++   Q+A+ L    + +G  P+ VT++ ++     L
Sbjct: 69  KGVFDKMPKRDVVTWNAMIFGLSHSVAPQEALKLVKSMQLAGQEPDFVTIVNLVPAVSRL 128

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
                C  +HG  I+ G       +N ++DMYS   D+  A Q+F  M+  + ISW  MM
Sbjct: 129 ADIDACRSLHGYVIRRG--FPAVFSNGLIDMYSKCGDIYVACQVFELMQHTNDISWRTMM 186

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
             +   E   + L +F  M+K+    + V++ + +   A + D  RGK++       G+ 
Sbjct: 187 AGYAHNECFFEVLDLFDYMKKNNFRLNKVSVASALLAAADVRDSGRGKEICEFARQQGID 246

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
           S++ ++ +++ MY+KCG+LD ++ +F  +  K LV+W+AII   VQ+  A +AL+ F  M
Sbjct: 247 SDVSITTAMMTMYAKCGNLDKAKQLFQGLKVKDLVAWSAIIDALVQSRYAEDALSLFRDM 306

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
           + +   + +++TL+S+L A  +L +L +   +H  A +A F     +   L+S Y+KCG 
Sbjct: 307 QNDFLKA-NNVTLLSVLPACADLMSLRLGKSVHCYAIKADFDSDILIGTSLVSMYAKCGL 365

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
            + A  VF  M    D+V+ N +I  Y   G    A+ ++H +  +  +PDS T + +L+
Sbjct: 366 FNSALTVFNRMP-CEDIVTCNALINEYSQIGDPYHAMEVFHVVQISEILPDSRTMVCLLS 424

Query: 464 AC-----GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
            C        G    GL+I         VK S      ++D+ A+ G L++A  L  +  
Sbjct: 425 VCILLHDLEQGSCIHGLIIKFGFDSHCNVKNS------LIDMYAKCGSLANAEFLFKRTE 478

Query: 519 EGMGPNIWRALLSGCV 534
                  W AL++G V
Sbjct: 479 FTKDEVSWNALIAGYV 494


>gi|334185027|ref|NP_186882.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546764|sp|Q9FWA6.2|PP207_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g02330
 gi|332640272|gb|AEE73793.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 903

 Score =  232 bits (592), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 167/583 (28%), Positives = 266/583 (45%), Gaps = 45/583 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D   +S LL  Y K  +  E+  +F  IPEKN VSWS +I G   N     ++K F  M 
Sbjct: 214 DVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQ 273

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
                 +      VL + A L  L L   +H   +K    +D                  
Sbjct: 274 KVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQ 333

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               LF+  +N    S NA++ G+   +   +A+LLF+    SGL  + +++  V R C 
Sbjct: 334 DAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACA 393

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            +   +    I+GL IK  L LDV V N+ +DMY     L  A ++F EM  +D +SW  
Sbjct: 394 LVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNA 453

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++          + L +F  M +SRI  D     +++      G L  G ++H+ +V  G
Sbjct: 454 IIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKA-CTGGSLGYGMEIHSSIVKSG 512

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKS--------------------LVSWT 321
           + S   +  S+I MYSKCG ++ +  + ++  +++                     VSW 
Sbjct: 513 MASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWN 572

Query: 322 AIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFE 381
           +IISGYV    + +A   F +M  E   + D  T  ++L     LA+  +  Q+H    +
Sbjct: 573 SIISGYVMKEQSEDAQMLFTRM-MEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIK 631

Query: 382 AGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALA 441
                   + + L+  YSKCG++  + ++FE+    RD V+WN +I GY  +G GE A+ 
Sbjct: 632 KELQSDVYICSTLVDMYSKCGDLHDSRLMFEK-SLRRDFVTWNAMICGYAHHGKGEEAIQ 690

Query: 442 LYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLL 501
           L+ +M      P+  T++SIL AC H GL + GL  F  M  +  + P   HY  +VD+L
Sbjct: 691 LFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDIL 750

Query: 502 ARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAE 544
            ++G +  A  L  ++       IWR LL  C +H    + AE
Sbjct: 751 GKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAE 793



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 158/586 (26%), Positives = 270/586 (46%), Gaps = 50/586 (8%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  D  + +K+++ Y KS  + +A + F+ +P ++VVSW+ ++ GY  NG   KS++ F 
Sbjct: 110 PLRDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFV 169

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--------------- 105
            M   G+  +  T   +L   + L++  L   IHG++V+ G ++D               
Sbjct: 170 DMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGK 229

Query: 106 -------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                  +F+G+     VS +AI+AG + N L   A+  F   +      +     +V+R
Sbjct: 230 RFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLR 289

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C AL    L   +H   +K     D  V  + LDMY+   ++  A  +F   E  +  S
Sbjct: 290 SCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQS 349

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           +  M+  +   E+   AL +F  +  S +  D ++L  +    A++  L  G Q++   +
Sbjct: 350 YNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAI 409

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
              L  ++ ++N+ I MY KC  L  +  VF+++  +  VSW AII+ + QNG   E L 
Sbjct: 410 KSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLF 469

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
            F+ M + + +  D  T  SIL A     +L   +++H    ++G     SV   LI  Y
Sbjct: 470 LFVSMLRSRIEP-DEFTFGSILKACTG-GSLGYGMEIHSSIVKSGMASNSSVGCSLIDMY 527

Query: 399 SKCGNVDLAYIV-------------FEEMGFLRD------VVSWNTIIYGYGVNGHGETA 439
           SKCG ++ A  +              EE+  + +       VSWN+II GY +    E A
Sbjct: 528 SKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDA 587

Query: 440 LALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGC--V 497
             L+ +M E G  PD  TY ++L+ C +      G  I  Q+I   K +   + Y C  +
Sbjct: 588 QMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVI---KKELQSDVYICSTL 644

Query: 498 VDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDA 543
           VD+ ++ G L D+  +  K L       W A++ G   H G+ ++A
Sbjct: 645 VDMYSKCGDLHDSRLMFEKSLR-RDFVTWNAMICGYAHH-GKGEEA 688



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 129/541 (23%), Positives = 251/541 (46%), Gaps = 36/541 (6%)

Query: 26  NLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQ 85
           +  +++   +  ++S V    +  G  E   +A +HM++SG  P +F +  +L      +
Sbjct: 38  DFLNQVNSVSTTNFSFVFKECAKQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSR 97

Query: 86  NLELAR------------SIHGLMVKFGLESDLFEG------LKNPYLVSCNAIVAGFIN 127
           +   A             S + ++  +   +D+F+       +    +VS N++++G++ 
Sbjct: 98  DFVSASMVFDKMPLRDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQ 157

Query: 128 NKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSV 187
           N    +++ +F      G+  +  T   +++ C  L   +L   IHG+ +++G   DV  
Sbjct: 158 NGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVA 217

Query: 188 NNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRI 247
            +++LDMY+       ++++F+ +  K+ +SW+ ++   V       ALK F+EM+K   
Sbjct: 218 ASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNA 277

Query: 248 ICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRS 307
                   +++   A L +L+ G QLHA  +     ++  +  + + MY+KC ++  ++ 
Sbjct: 278 GVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQI 337

Query: 308 VFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELA 367
           +F+     +  S+ A+I+GY Q     +AL  F ++        D I+L  +  A   + 
Sbjct: 338 LFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGL-GFDEISLSGVFRACALVK 396

Query: 368 ALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
            L   LQ++G+A ++       V N  I  Y KC  +  A+ VF+EM   RD VSWN II
Sbjct: 397 GLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMR-RRDAVSWNAII 455

Query: 428 YGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKV 487
             +  NG G   L L+  M  +   PD  T+ SIL AC   G    G+ I + +++    
Sbjct: 456 AAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACT-GGSLGYGMEIHSSIVKSGMA 514

Query: 488 KPSQEHYGC-VVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCV-----LHVGRFQ 541
             S    GC ++D+ ++ G + +A  +  +  +       RA +SG +     +H  R Q
Sbjct: 515 --SNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQ-------RANVSGTMEELEKMHNKRLQ 565

Query: 542 D 542
           +
Sbjct: 566 E 566


>gi|218190710|gb|EEC73137.1| hypothetical protein OsI_07160 [Oryza sativa Indica Group]
          Length = 603

 Score =  232 bits (592), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 160/500 (32%), Positives = 256/500 (51%), Gaps = 54/500 (10%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV---A 162
           LF+ +  P LVS N +VA +  +   +++V +FN  R +G+ P+  T++ V+ GCV   +
Sbjct: 109 LFDEMPRPTLVSWNCMVAAYGRSSQVEESVAVFNAMRRAGVRPSEGTLVGVLSGCVDSVS 168

Query: 163 LGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
             +  +C  ++G ++K GL   + V NSVL M      LDAA  +F  +  K V++WT  
Sbjct: 169 ASNPGMC--VYGFSVKSGLDAGLPVLNSVLTMLVRGSHLDAARLLFDGICNKSVVTWT-- 224

Query: 223 MGLFVDFEYAGDALKIFREMRKSRII---CDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
             L   +   GD L++F    + R +    D+V L+NLIS   + G+L   K +HA ++ 
Sbjct: 225 -ALASGYLLRGDYLEVFDLFNRMRGVGQNVDSVVLVNLISAAVLFGNLSVAKGVHALIIK 283

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G + E  L+ S+I +Y+KCGDL+S+R VF+ +   ++V WT++ISGYV+ G   EAL  
Sbjct: 284 LGFECEEDLAASLINLYAKCGDLESAREVFDAVHMANVVVWTSMISGYVEGGHLNEALVM 343

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           F  M     +  +  TL S+L+A  +L +  +  ++   A   G      V   LI  YS
Sbjct: 344 FDSMVCANIEP-NEATLSSVLSACAKLGSANLGKKVEEQAIATGLHSEPRVATGLIDMYS 402

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           K G+++LA  +FE +   RD+  W+ +I GY  NG G  AL L+ +M   G  PD   + 
Sbjct: 403 KFGSINLARKIFEGVTN-RDIAVWSAMINGYACNGEGSEALVLFKEMKNKGFQPDGIAFT 461

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519
            +L AC ++GL ++GL  F+ M  E  ++PS EH+ C+VDLL +AG      G A K  +
Sbjct: 462 HVLTACNYSGLVDEGLECFHSMTMEYGIEPSIEHHMCMVDLLCKAGHF----GSALKFFK 517

Query: 520 GMGPNIWRALLSG-------------------------------CVLH------VGRFQD 542
            M   +   +L+                                CVL       +G+++ 
Sbjct: 518 QMPSEVQNKVLAPIISSYSARCADSSIDFIPEELLNLETQDSDHCVLMSNMLSCLGKWKK 577

Query: 543 AEALRSGSQKKGIIKIPGIS 562
           A + R    K+G++K PG S
Sbjct: 578 ATSYRRQLSKQGLMKEPGWS 597



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 122/432 (28%), Positives = 218/432 (50%), Gaps = 29/432 (6%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + LL  Y K G++ +A  LFDE+P   +VSW+ ++  Y  +   E+S+  F+ M  +G+ 
Sbjct: 91  TSLLDMYAKCGRLPDARRLFDEMPRPTLVSWNCMVAAYGRSSQVEESVAVFNAMRRAGVR 150

Query: 69  PNSFTMVGVL---VAAAGLQNLELARSIHGLMVKFGLESDL------------------- 106
           P+  T+VGVL   V +    N  +   ++G  VK GL++ L                   
Sbjct: 151 PSEGTLVGVLSGCVDSVSASNPGMC--VYGFSVKSGLDAGLPVLNSVLTMLVRGSHLDAA 208

Query: 107 ---FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
              F+G+ N  +V+  A+ +G++    + +   LFN  RG G   ++V ++ +I   V  
Sbjct: 209 RLLFDGICNKSVVTWTALASGYLLRGDYLEVFDLFNRMRGVGQNVDSVVLVNLISAAVLF 268

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
           G+ ++ + +H L IKLG   +  +  S++++Y+   DL++A ++F  +   +V+ WT M+
Sbjct: 269 GNLSVAKGVHALIIKLGFECEEDLAASLINLYAKCGDLESAREVFDAVHMANVVVWTSMI 328

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
             +V+  +  +AL +F  M  + I  +   L +++S  A LG    GK++  Q +  GL 
Sbjct: 329 SGYVEGGHLNEALVMFDSMVCANIEPNEATLSSVLSACAKLGSANLGKKVEEQAIATGLH 388

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
           SE R++  +I MYSK G ++ +R +F  +T + +  W+A+I+GY  NG   EAL  F +M
Sbjct: 389 SEPRVATGLIDMYSKFGSINLARKIFEGVTNRDIAVWSAMINGYACNGEGSEALVLFKEM 448

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQ-LHGIAFEAGFPRYRSVQNCLISSYSKCG 402
           +  K    D I    +LTA      ++  L+  H +  E G         C++    K G
Sbjct: 449 KN-KGFQPDGIAFTHVLTACNYSGLVDEGLECFHSMTMEYGIEPSIEHHMCMVDLLCKAG 507

Query: 403 NVDLAYIVFEEM 414
           +   A   F++M
Sbjct: 508 HFGSALKFFKQM 519



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 103/228 (45%), Gaps = 25/228 (10%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ L++ Y K G ++ A  +FD +   NVV W+ +I GY   G   +++  F  M+ + +
Sbjct: 293 AASLINLYAKCGDLESAREVFDAVHMANVVVWTSMISGYVEGGHLNEALVMFDSMVCANI 352

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
            PN  T+  VL A A L +  L + +    +  GL S+                      
Sbjct: 353 EPNEATLSSVLSACAKLGSANLGKKVEEQAIATGLHSEPRVATGLIDMYSKFGSINLARK 412

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC--VAL 163
           +FEG+ N  +   +A++ G+  N    +A++LF   +  G  P+ +    V+  C    L
Sbjct: 413 IFEGVTNRDIAVWSAMINGYACNGEGSEALVLFKEMKNKGFQPDGIAFTHVLTACNYSGL 472

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM 211
               L E  H +T++ G+   +  +  ++D+        +A++ F++M
Sbjct: 473 VDEGL-ECFHSMTMEYGIEPSIEHHMCMVDLLCKAGHFGSALKFFKQM 519



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 390 VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
           V+  L+  Y+KCG +  A  +F+EM     +VSWN ++  YG +   E ++A+++ M   
Sbjct: 89  VRTSLLDMYAKCGRLPDARRLFDEMP-RPTLVSWNCMVAAYGRSSQVEESVAVFNAMRRA 147

Query: 450 GEVPDSSTYLSILNAC-GHAGLTNDGLVIF 478
           G  P   T + +L+ C      +N G+ ++
Sbjct: 148 GVRPSEGTLVGVLSGCVDSVSASNPGMCVY 177



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 3/105 (2%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           +P  ++ L+  Y K G I  A  +F+ +  +++  WS +I+GY+ NG   +++  F  M 
Sbjct: 390 EPRVATGLIDMYSKFGSINLARKIFEGVTNRDIAVWSAMINGYACNGEGSEALVLFKEMK 449

Query: 64  LSGLLPNSFTMVGVLVAA--AGLQNLELARSIHGLMVKFGLESDL 106
             G  P+      VL A   +GL + E     H + +++G+E  +
Sbjct: 450 NKGFQPDGIAFTHVLTACNYSGLVD-EGLECFHSMTMEYGIEPSI 493


>gi|115446089|ref|NP_001046824.1| Os02g0468800 [Oryza sativa Japonica Group]
 gi|47497329|dbj|BAD19370.1| selenium binding protein-like protein [Oryza sativa Japonica Group]
 gi|113536355|dbj|BAF08738.1| Os02g0468800 [Oryza sativa Japonica Group]
 gi|125582005|gb|EAZ22936.1| hypothetical protein OsJ_06625 [Oryza sativa Japonica Group]
          Length = 603

 Score =  232 bits (592), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 160/500 (32%), Positives = 256/500 (51%), Gaps = 54/500 (10%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV---A 162
           LF+ +  P LVS N +VA +  +   +++V +FN  R +G+ P+  T++ V+ GCV   +
Sbjct: 109 LFDEMPRPTLVSWNCMVAAYGRSSQVEESVAVFNAMRRAGVRPSEGTLVGVLSGCVDSVS 168

Query: 163 LGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
             +  +C  ++G ++K GL   + V NSVL M      LDAA  +F  +  K V++WT  
Sbjct: 169 ASNPGMC--VYGFSVKSGLDAGLPVLNSVLTMLVRGSHLDAARLLFDGICNKSVVTWT-- 224

Query: 223 MGLFVDFEYAGDALKIFREMRKSRII---CDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
             L   +   GD L++F    + R +    D+V L+NLIS   + G+L   K +HA ++ 
Sbjct: 225 -ALASGYLLRGDYLEVFDLFNRMRGVGKNVDSVVLVNLISAAVLFGNLSVAKGVHALIIK 283

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G + E  L+ S+I +Y+KCGDL+S+R VF+ +   ++V WT++ISGYV+ G   EAL  
Sbjct: 284 LGFECEEDLAASLINLYAKCGDLESAREVFDAVHMANVVVWTSMISGYVEGGHLNEALVM 343

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           F  M     +  +  TL S+L+A  +L +  +  ++   A   G      V   LI  YS
Sbjct: 344 FDSMVCANIEP-NEATLSSVLSACAKLGSANLGKKVEEQAIATGLHSEPRVATGLIDMYS 402

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           K G+++LA  +FE +   RD+  W+ +I GY  NG G  AL L+ +M   G  PD   + 
Sbjct: 403 KFGSINLARKIFEGVTN-RDIAVWSAMINGYACNGEGSEALVLFKEMKNKGFQPDGIAFT 461

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519
            +L AC ++GL ++GL  F+ M  E  ++PS EH+ C+VDLL +AG      G A K  +
Sbjct: 462 HVLTACNYSGLVDEGLECFHSMTMEYGIEPSIEHHMCMVDLLCKAGHF----GSALKFFK 517

Query: 520 GMGPNIWRALLSG-------------------------------CVLH------VGRFQD 542
            M   +   +L+                                CVL       +G+++ 
Sbjct: 518 QMPSEVQNKVLAPIISSYSARCADSSIDFIPEELLNLETQDSDHCVLMSNMLSCLGKWKK 577

Query: 543 AEALRSGSQKKGIIKIPGIS 562
           A + R    K+G++K PG S
Sbjct: 578 ATSYRRQLSKQGLMKEPGWS 597



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 122/432 (28%), Positives = 218/432 (50%), Gaps = 29/432 (6%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + LL  Y K G++ +A  LFDE+P   +VSW+ ++  Y  +   E+S+  F+ M  +G+ 
Sbjct: 91  TSLLDMYAKCGRLPDARRLFDEMPRPTLVSWNCMVAAYGRSSQVEESVAVFNAMRRAGVR 150

Query: 69  PNSFTMVGVL---VAAAGLQNLELARSIHGLMVKFGLESDL------------------- 106
           P+  T+VGVL   V +    N  +   ++G  VK GL++ L                   
Sbjct: 151 PSEGTLVGVLSGCVDSVSASNPGMC--VYGFSVKSGLDAGLPVLNSVLTMLVRGSHLDAA 208

Query: 107 ---FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
              F+G+ N  +V+  A+ +G++    + +   LFN  RG G   ++V ++ +I   V  
Sbjct: 209 RLLFDGICNKSVVTWTALASGYLLRGDYLEVFDLFNRMRGVGKNVDSVVLVNLISAAVLF 268

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
           G+ ++ + +H L IKLG   +  +  S++++Y+   DL++A ++F  +   +V+ WT M+
Sbjct: 269 GNLSVAKGVHALIIKLGFECEEDLAASLINLYAKCGDLESAREVFDAVHMANVVVWTSMI 328

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
             +V+  +  +AL +F  M  + I  +   L +++S  A LG    GK++  Q +  GL 
Sbjct: 329 SGYVEGGHLNEALVMFDSMVCANIEPNEATLSSVLSACAKLGSANLGKKVEEQAIATGLH 388

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
           SE R++  +I MYSK G ++ +R +F  +T + +  W+A+I+GY  NG   EAL  F +M
Sbjct: 389 SEPRVATGLIDMYSKFGSINLARKIFEGVTNRDIAVWSAMINGYACNGEGSEALVLFKEM 448

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQ-LHGIAFEAGFPRYRSVQNCLISSYSKCG 402
           +  K    D I    +LTA      ++  L+  H +  E G         C++    K G
Sbjct: 449 KN-KGFQPDGIAFTHVLTACNYSGLVDEGLECFHSMTMEYGIEPSIEHHMCMVDLLCKAG 507

Query: 403 NVDLAYIVFEEM 414
           +   A   F++M
Sbjct: 508 HFGSALKFFKQM 519



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 103/228 (45%), Gaps = 25/228 (10%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ L++ Y K G ++ A  +FD +   NVV W+ +I GY   G   +++  F  M+ + +
Sbjct: 293 AASLINLYAKCGDLESAREVFDAVHMANVVVWTSMISGYVEGGHLNEALVMFDSMVCANI 352

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
            PN  T+  VL A A L +  L + +    +  GL S+                      
Sbjct: 353 EPNEATLSSVLSACAKLGSANLGKKVEEQAIATGLHSEPRVATGLIDMYSKFGSINLARK 412

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC--VAL 163
           +FEG+ N  +   +A++ G+  N    +A++LF   +  G  P+ +    V+  C    L
Sbjct: 413 IFEGVTNRDIAVWSAMINGYACNGEGSEALVLFKEMKNKGFQPDGIAFTHVLTACNYSGL 472

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM 211
               L E  H +T++ G+   +  +  ++D+        +A++ F++M
Sbjct: 473 VDEGL-ECFHSMTMEYGIEPSIEHHMCMVDLLCKAGHFGSALKFFKQM 519



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 390 VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
           V+  L+  Y+KCG +  A  +F+EM     +VSWN ++  YG +   E ++A+++ M   
Sbjct: 89  VRTSLLDMYAKCGRLPDARRLFDEMP-RPTLVSWNCMVAAYGRSSQVEESVAVFNAMRRA 147

Query: 450 GEVPDSSTYLSILNAC-GHAGLTNDGLVIF 478
           G  P   T + +L+ C      +N G+ ++
Sbjct: 148 GVRPSEGTLVGVLSGCVDSVSASNPGMCVY 177



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 3/105 (2%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           +P  ++ L+  Y K G I  A  +F+ +  +++  WS +I+GY+ NG   +++  F  M 
Sbjct: 390 EPRVATGLIDMYSKFGSINLARKIFEGVTNRDIAVWSAMINGYACNGEGSEALVLFKEMK 449

Query: 64  LSGLLPNSFTMVGVLVAA--AGLQNLELARSIHGLMVKFGLESDL 106
             G  P+      VL A   +GL + E     H + +++G+E  +
Sbjct: 450 NKGFQPDGIAFTHVLTACNYSGLVD-EGLECFHSMTMEYGIEPSI 493


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  232 bits (591), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 135/408 (33%), Positives = 213/408 (52%), Gaps = 4/408 (0%)

Query: 131 FQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNS 190
           F QA+ L+      G  PNA T    ++ C AL    L    HG   K+G + +  V   
Sbjct: 30  FLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQITKVGCVFEPFVQTG 89

Query: 191 VLDMYSCLMDLDAAIQIFRE--MECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRII 248
           ++ MY     +D A ++F E     K  + +  ++  +V      +A+ +FR+M +  + 
Sbjct: 90  LISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEAVLLFRQMNEEGVP 149

Query: 249 CDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSV 308
            ++V LL LI       +L+ G  LH   +  G  S++ + N  I MY KCG ++ ++ +
Sbjct: 150 VNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKL 209

Query: 309 FNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAA 368
           F+++  K L+SW A++SGY QNG A   L  +  M        D +TLV +L++   L A
Sbjct: 210 FDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHP-DPVTLVGVLSSCANLGA 268

Query: 369 LEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIY 428
             +  ++      +GF     + N LI+ Y++CGN+  A  VF+ M   R +VSW  II 
Sbjct: 269 QSVGHEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMP-ERTLVSWTAIIG 327

Query: 429 GYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVK 488
           GYG++GHGE A+ L+ +M  +G  PD + ++ +L+AC HAGLT+ GL  F  M    +++
Sbjct: 328 GYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLE 387

Query: 489 PSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
           P  EHY C+VDLL RAG L +A  L   +       +W ALL  C +H
Sbjct: 388 PGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIH 435



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 122/464 (26%), Positives = 213/464 (45%), Gaps = 36/464 (7%)

Query: 54  KSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF------ 107
           +++  +  M+  G  PN+FT    L + A L    L    HG + K G   + F      
Sbjct: 32  QALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQITKVGCVFEPFVQTGLI 91

Query: 108 -----------------EGLKNPYLVSC-NAIVAGFINNKLFQQAVLLFNFFRGSGLVPN 149
                            E   +  L  C NA+V+G+++N    +AVLLF      G+  N
Sbjct: 92  SMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEAVLLFRQMNEEGVPVN 151

Query: 150 AVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFR 209
           +VT+L +I  CV+  +  L   +H  T+K G   DVSV N  + MY     ++ A ++F 
Sbjct: 152 SVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFD 211

Query: 210 EMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKR 269
           EM  K +ISW  M+  +     A + L+++R M  + +  D V L+ ++S  A LG    
Sbjct: 212 EMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSV 271

Query: 270 GKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQ 329
           G ++  ++   G  S   L+N++I MY++CG+L  +++VF+ + E++LVSWTAII GY  
Sbjct: 272 GHEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGM 331

Query: 330 NGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQL-----HGIAFEAGF 384
           +G    A+  F +M +   +  D    V +L+A       +  L+           E G 
Sbjct: 332 HGHGEIAVQLFKEMIRSGIEP-DGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGP 390

Query: 385 PRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH 444
             Y    +C++    + G +  A  + E M    D   W  ++    ++ + E A   + 
Sbjct: 391 EHY----SCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFE 446

Query: 445 KMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVK 488
           ++ E    P++  Y  +L+        + G++    M++E K+K
Sbjct: 447 RVIELE--PENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLK 488



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 142/292 (48%), Gaps = 24/292 (8%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDE--IPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
            +P+  + L+S Y K   +  A  +F+E     K  V ++ ++ GY  N    +++  F 
Sbjct: 82  FEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEAVLLFR 141

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--------------- 105
            M   G+  NS T++G++ A     NLEL  S+H   +K+G +SD               
Sbjct: 142 QMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCG 201

Query: 106 -------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                  LF+ +    L+S NA+V+G+  N L    + L+     +G+ P+ VT++ V+ 
Sbjct: 202 SVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLS 261

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C  LG++++   +       G   +  +NN++++MY+   +L  A  +F  M  + ++S
Sbjct: 262 SCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVS 321

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG 270
           WT ++G +    +   A+++F+EM +S I  D  A + ++S  +  G   +G
Sbjct: 322 WTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQG 373



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 56/89 (62%), Gaps = 4/89 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           +P+ ++ L++ Y + G + +A+ +FD +PE+ +VSW+ +I GY ++G  E +++ F  M+
Sbjct: 287 NPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMI 346

Query: 64  LSGLLPNSFTMVGVLVAA--AGL--QNLE 88
            SG+ P+    V VL A   AGL  Q LE
Sbjct: 347 RSGIEPDGTAFVCVLSACSHAGLTDQGLE 375


>gi|359476188|ref|XP_002283446.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Vitis vinifera]
          Length = 829

 Score =  232 bits (591), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 160/619 (25%), Positives = 293/619 (47%), Gaps = 62/619 (10%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y ++ ++S Y K G+I+ A  +F E  +++ VSW+ +I G+   G  E +++    M   
Sbjct: 35  YTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNFETALEFLKSMKRY 94

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPYL-------- 115
           G   + ++   +L   A +  +E+ + +H +MVK G E ++F G  L + Y         
Sbjct: 95  GFAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGSALLDMYAKCERVEDA 154

Query: 116 ------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
                       V+ NA+++G+        A  L +     G+  +  T   ++      
Sbjct: 155 FEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDDGTFAPLLTLLDDP 214

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFR-EMECKDVISWTRM 222
               L   +H   +K GL  D +V N+++  YS    ++ A ++F   +E +D+++W  M
Sbjct: 215 DLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLVTWNSM 274

Query: 223 MGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL 282
           +  ++      +A ++F EM+      D     ++IS         +GK LH  V+  GL
Sbjct: 275 LAAYLVNNQEEEAFQLFLEMQVLGFEPDIYTYTSVISAAFEGSHQGQGKSLHGLVIKRGL 334

Query: 283 QSELRLSNSIIAMY--SKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           +  + +SNS+IAMY  S    +D + ++F  +  K  VSW +I++G+ Q+G + +AL  F
Sbjct: 335 EFLVPISNSLIAMYLKSHSKSMDEALNIFESLENKDHVSWNSILTGFSQSGLSEDALKFF 394

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
             MR +    +D     ++L +  +LA L++  Q+H +  ++GF     V + LI  YSK
Sbjct: 395 ENMRSQYV-VIDHYAFSAVLRSCSDLATLQLGQQVHVLVLKSGFEPNGFVASSLIFMYSK 453

Query: 401 CGNVDLAYIVFEEMGFLRDV-VSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           CG ++ A   F+     +D  ++WN++I+GY  +G G+ AL L+  M +     D  T++
Sbjct: 454 CGVIEDARKSFDATP--KDSSIAWNSLIFGYAQHGRGKIALDLFFLMKDRRVKLDHITFV 511

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519
           ++L AC H GL  +G      M  +  + P  EHY C++DLL RAG L +A  L   +  
Sbjct: 512 AVLTACSHIGLVEEGWSFLKSMESDYGIPPRMEHYACMIDLLGRAGRLDEAKALIEAMPF 571

Query: 520 GMGPNIWRALLSGC---------------------------VL------HVGRFQDAEAL 546
                +W+ LL  C                           VL      H+ R+ +  ++
Sbjct: 572 EPDAMVWKTLLGACRTCGDIELASQVASHLLELEPEEHCTYVLLSSMFGHLRRWNEKASI 631

Query: 547 RSGSQKKGIIKIPGISFLN 565
           +   +++G+ K+PG S++ 
Sbjct: 632 KRLMKERGVKKVPGWSWIE 650



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 151/293 (51%), Gaps = 1/293 (0%)

Query: 173 HGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYA 232
           H L IK G    +   N+++  Y+   ++  A ++F E   +D +SW  M+  FV+    
Sbjct: 22  HCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNF 81

Query: 233 GDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSI 292
             AL+  + M++     D  +  +++   A +G ++ G+Q+H+ +V  G +  +   +++
Sbjct: 82  ETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGSAL 141

Query: 293 IAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVD 352
           + MY+KC  ++ +  VF  I  ++ V+W A+ISGY Q G    A      M  E  + +D
Sbjct: 142 LDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVE-ID 200

Query: 353 SITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFE 412
             T   +LT   +    ++  Q+H    + G     +V N +I++YS+CG+++ A  VF+
Sbjct: 201 DGTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFD 260

Query: 413 EMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
                RD+V+WN+++  Y VN   E A  L+ +M   G  PD  TY S+++A 
Sbjct: 261 GAIETRDLVTWNSMLAAYLVNNQEEEAFQLFLEMQVLGFEPDIYTYTSVISAA 313



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 97/192 (50%), Gaps = 2/192 (1%)

Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISG 326
           L R    H   +  G  + +  +N+II+ Y+KCG++  +  +F + +++  VSW  +I+G
Sbjct: 15  LYRASVNHCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAG 74

Query: 327 YVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPR 386
           +V  G    AL +F+K  +    +VD  +  SIL     +  +E+  Q+H +  + G+  
Sbjct: 75  FVNLGNFETAL-EFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGYEG 133

Query: 387 YRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM 446
                + L+  Y+KC  V+ A+ VF+ +  +R+ V+WN +I GY   G   TA  L   M
Sbjct: 134 NVFAGSALLDMYAKCERVEDAFEVFKSIN-IRNSVTWNALISGYAQVGDRGTAFWLLDCM 192

Query: 447 TETGEVPDSSTY 458
              G   D  T+
Sbjct: 193 ELEGVEIDDGTF 204


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  232 bits (591), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 169/597 (28%), Positives = 275/597 (46%), Gaps = 63/597 (10%)

Query: 21  IKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVA 80
           + ++  LF+ +     ++W  VI  Y+ +G   KS+ +F  M+ SGL P+      VL A
Sbjct: 58  LHDSLRLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKA 117

Query: 81  AAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVL---- 136
            A L +L L  S+HG +++ GL+ DL+ G     + S    +      +L    VL    
Sbjct: 118 CAMLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEMT 177

Query: 137 --LFNFFRGSGLVPN---AVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSV 191
               +    S LV N    V+ +      V+  SR     +        L +D    +  
Sbjct: 178 ERTRSVRTASVLVGNQGRKVSDIEAFNYDVSCRSREFEAQV--------LEIDYKPRSEY 229

Query: 192 LDMYSC-----------LMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFR 240
            +M +C            M +D+  +IF  M  KD++SW  ++         G+ L + R
Sbjct: 230 REMEACNLGQQIKDISHSMSVDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVR 289

Query: 241 EMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCG 300
           EM  + +  D+  L +++ + A   D+ +GK++H   +  GL +E+ +++S+I MY+KC 
Sbjct: 290 EMGGANLKPDSFTLSSVLPLIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCT 349

Query: 301 DLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSIL 360
            +  S  VF  +TE+  +SW +II+G VQNG   E L  F +M   K     S +  SI+
Sbjct: 350 RVVDSYRVFTLLTERDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKP-KSYSFSSIM 408

Query: 361 TASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDV 420
            A   L  L +  QLHG     GF     + + L+  Y+KCGN+  A  +F+ M  LRD+
Sbjct: 409 PACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMR-LRDM 467

Query: 421 VSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQ 480
           VSW  +I G  ++GH   A+ L+ +M   G  P+   ++++L AC HAGL ++    FN 
Sbjct: 468 VSWTAMIMGCALHGHALDAIELFEQMKTEGIEPNYVAFMAVLTACSHAGLVDEAWKYFNS 527

Query: 481 MIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH---- 536
           M  +  + P  EHY  V DLL RAG L +A      +  G   ++W  LLS C +H    
Sbjct: 528 MTLDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMPIGPTGSVWATLLSACRVHKNVD 587

Query: 537 -----------------------------VGRFQDAEALRSGSQKKGIIKIPGISFL 564
                                          R+++A   R+  ++ GI K P  S++
Sbjct: 588 MAEKVANRILEVDPKNTGAYILLANIYSAARRWKEAAKWRASLRRTGIRKTPACSWI 644



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 134/264 (50%), Gaps = 22/264 (8%)

Query: 18  SGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGV 77
           S  +     +F+ +PEK++VSW+ +I G + NG + +++     M  + L P+SFT+  V
Sbjct: 247 SMSVDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSV 306

Query: 78  LVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPYL-------------------- 115
           L   A   ++   + IHG  ++ GL+++++    L + Y                     
Sbjct: 307 LPLIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDG 366

Query: 116 VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGL 175
           +S N+I+AG + N LF + +  F     + + P + +  +++  C  L +  L + +HG 
Sbjct: 367 ISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGY 426

Query: 176 TIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDA 235
             + G   ++ + +S++DMY+   ++  A QIF  M  +D++SWT M+       +A DA
Sbjct: 427 ITRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDA 486

Query: 236 LKIFREMRKSRIICDTVALLNLIS 259
           +++F +M+   I  + VA + +++
Sbjct: 487 IELFEQMKTEGIEPNYVAFMAVLT 510



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 84/181 (46%), Gaps = 22/181 (12%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y +S L+  Y K  ++ ++  +F  + E++ +SW+ +I G   NG  ++ +K F  M+++
Sbjct: 336 YVASSLIDMYAKCTRVVDSYRVFTLLTERDGISWNSIIAGCVQNGLFDEGLKFFRQMLMA 395

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-------------------- 105
            + P S++   ++ A A L  L L + +HG + + G + +                    
Sbjct: 396 KIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTA 455

Query: 106 --LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
             +F+ ++   +VS  A++ G   +     A+ LF   +  G+ PN V  + V+  C   
Sbjct: 456 RQIFDRMRLRDMVSWTAMIMGCALHGHALDAIELFEQMKTEGIEPNYVAFMAVLTACSHA 515

Query: 164 G 164
           G
Sbjct: 516 G 516



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 98/411 (23%), Positives = 175/411 (42%), Gaps = 77/411 (18%)

Query: 155 TVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
           +++R  +++ SR+  + +H   +K       +++  +  +YS +  L  ++++F  +   
Sbjct: 13  SLLRNPLSIKSRSQAQQLHAQVLKFQASSLCNLSLLLS-IYSHINLLHDSLRLFNTLHFP 71

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
             ++W  ++  +        +L  F  M  S +  D     +++   A+L DL  G+ LH
Sbjct: 72  PALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAMLMDLNLGESLH 131

Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSS-------RSVFNQITEKSLVSWTA-IISG 326
             ++  GL  +L   N+++ MYSK   L  S         V +++TE++    TA ++ G
Sbjct: 132 GYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEMTERTRSVRTASVLVG 191

Query: 327 YVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPR 386
                      NQ  K+   +  + D    VS  +   E   LEI  +          PR
Sbjct: 192 -----------NQGRKVSDIEAFNYD----VSCRSREFEAQVLEIDYK----------PR 226

Query: 387 --YRSVQNC----LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNG-HGETA 439
             YR ++ C     I   S   +VD    +FE M   +D+VSWNTII G   NG +GET 
Sbjct: 227 SEYREMEACNLGQQIKDISHSMSVDSVRKIFEMMP-EKDLVSWNTIIAGNARNGLYGET- 284

Query: 440 LALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEEN-KVKPSQEHYGC-- 496
           L +  +M      PDS T  S+L                  +I EN  +   +E +GC  
Sbjct: 285 LTMVREMGGANLKPDSFTLSSVL-----------------PLIAENVDISKGKEIHGCSI 327

Query: 497 -------------VVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCV 534
                        ++D+ A+   + D+  +   L E  G + W ++++GCV
Sbjct: 328 RQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGIS-WNSIIAGCV 377


>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 642

 Score =  232 bits (591), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 150/511 (29%), Positives = 260/511 (50%), Gaps = 49/511 (9%)

Query: 60  SHMMLSGLLPNSF--TMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVS 117
           S M+L+GL+ + F  + +    A +  ++L+   +I            LF   +NP   S
Sbjct: 27  SQMVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNI------------LF-NTRNPNTFS 73

Query: 118 CNAIVAGFINNKLFQQAVLLFN-FFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLT 176
            N  + GF++++  ++AV+L+    +  G  P+  T   + + C  L    +   I G  
Sbjct: 74  WNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHV 133

Query: 177 IKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDAL 236
           + LG   D+ V+N+V+ +     DLD A ++F +   +D++SW  M+  +V   +A +AL
Sbjct: 134 LHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEAL 193

Query: 237 KIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMY 296
             +REM+   I  D V ++ ++S  A L DL  G++ H  +   GL+  + L+N+++ MY
Sbjct: 194 NFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMY 253

Query: 297 SKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC------------------------ 332
            KCG+L+S+R +F+ +T K++VSWT ++ GY Q+G                         
Sbjct: 254 MKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIG 313

Query: 333 -------AREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFP 385
                   +EAL  F +M Q    + D +T+VS L+A  +L AL++ + +H    +    
Sbjct: 314 GYVHANRGKEALALFNEM-QAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELS 372

Query: 386 RYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHK 445
              ++   LI  Y+KCG +  A  VF+E+   R+ ++W  II G  ++G+   A+A + +
Sbjct: 373 LNVALGTALIDMYAKCGKITKAIQVFQELPG-RNSLTWTAIISGLALHGNAHGAIAYFSE 431

Query: 446 MTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAG 505
           M +   +PD  T+L +L+AC H GL  +G   F+QM  +  + P  +HY C+VDLL RAG
Sbjct: 432 MIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAG 491

Query: 506 CLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
            L +A  L   +       +W AL   C +H
Sbjct: 492 LLEEAEELIKSMPIEADAVVWGALFFACRIH 522



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 121/518 (23%), Positives = 221/518 (42%), Gaps = 85/518 (16%)

Query: 26  NLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM-LSGLLPNSFTMVGVLVAAAGL 84
           N+       N  SW++ I G+  +    +++  +  ++   G  P+++T   +  A A L
Sbjct: 61  NILFNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARL 120

Query: 85  QNLELARSIHGLMVKFGLESDLF---------------EGLKNPY-------LVSCNAIV 122
             + +   I G ++  G +SD+F               +G +  +       LVS N+++
Sbjct: 121 SLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMI 180

Query: 123 AGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLI 182
            G++      +A+  +   +  G+ P+ VTM+ V+  C  L    L    H    + GL 
Sbjct: 181 NGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLK 240

Query: 183 LDVSVNNSVLDMY-SC--------LMD----------------------LDAAIQIFREM 211
           L V + N+++DMY  C        L D                      LD A ++F EM
Sbjct: 241 LTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEM 300

Query: 212 ECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGK 271
             KDV+ W  M+G +V      +AL +F EM+   I  D V +++ +S  + LG L  G 
Sbjct: 301 PDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGI 360

Query: 272 QLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNG 331
            +H  +    L   + L  ++I MY+KCG +  +  VF ++  ++ ++WTAIISG   +G
Sbjct: 361 WIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHG 420

Query: 332 CAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ 391
            A  A+  F +M  + +   D +T + +L+A             HG   E G   +  + 
Sbjct: 421 NAHGAIAYFSEM-IDNSVMPDEVTFLGLLSAC-----------CHGGLVEEGRKYFSQMS 468

Query: 392 N------------CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGH---G 436
           +            C++    + G ++ A  + + M    D V W  + +   ++G+   G
Sbjct: 469 SKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMG 528

Query: 437 ETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDG 474
           E A +   +M    +  DS  Y+ + N  G A +  + 
Sbjct: 529 ERAASKLLQM----DPHDSGIYVLLANMYGEAEMWKEA 562



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 84/375 (22%), Positives = 173/375 (46%), Gaps = 55/375 (14%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + S+ ++      G +  A  +FD+   +++VSW+ +I+GY   G+  +++  +  M 
Sbjct: 141 DIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMK 200

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE-------------------- 103
           + G+ P+  TM+GV+ + A L++L+L R  H  + + GL+                    
Sbjct: 201 VEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLE 260

Query: 104 --SDLFEGLKNPYLVS-------------------------------CNAIVAGFINNKL 130
               LF+ + N  +VS                                NA++ G+++   
Sbjct: 261 SARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANR 320

Query: 131 FQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNS 190
            ++A+ LFN  +   + P+ VTM++ +  C  LG+  +   IH    K  L L+V++  +
Sbjct: 321 GKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTA 380

Query: 191 VLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICD 250
           ++DMY+    +  AIQ+F+E+  ++ ++WT ++        A  A+  F EM  + ++ D
Sbjct: 381 LIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPD 440

Query: 251 TVALLNLISVNAILGDLKRGKQLHAQVVLG-GLQSELRLSNSIIAMYSKCGDLDSSRSVF 309
            V  L L+S     G ++ G++  +Q+     L  +L+  + ++ +  + G L+ +  + 
Sbjct: 441 EVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELI 500

Query: 310 NQIT-EKSLVSWTAI 323
             +  E   V W A+
Sbjct: 501 KSMPIEADAVVWGAL 515


>gi|357501931|ref|XP_003621254.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355496269|gb|AES77472.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 700

 Score =  232 bits (591), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 141/443 (31%), Positives = 228/443 (51%), Gaps = 7/443 (1%)

Query: 99  KFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
           K  L   LF+ +    +VS N ++ G++++    + V LF     S   PN     TV+ 
Sbjct: 70  KLRLARYLFDEMSLRSVVSYNVLMGGYLHSGEHLEVVKLFKNMVSSLYQPNEYVFTTVLS 129

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK---- 214
            C   G        HG   K GL+    V +S++ MYS    +D A+Q+           
Sbjct: 130 ACAHSGRVFEGMQCHGFLFKFGLVFHHFVKSSLVHMYSKCFHVDLALQVLESEHGNIDND 189

Query: 215 -DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQL 273
            D   +  ++   V+    G+A+++   M    ++ D+V  ++++ +   + DL  G Q+
Sbjct: 190 NDAFCYNSVLNALVESGRLGEAVEVLGRMVDEGVVWDSVTYVSVMGLCGQIRDLGLGLQV 249

Query: 274 HAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA 333
           HAQ++ GGL  ++ + + ++ M+ KCGD+ S+R VF+ +  +++V WT++++ Y+QNG  
Sbjct: 250 HAQLLKGGLTFDVFVGSMLVDMFGKCGDVLSARKVFDGLQNRNVVVWTSLMTAYLQNGEF 309

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC 393
            E LN    M +E T S +  T   +L A   +AAL     LH    + G      V N 
Sbjct: 310 EETLNLLSCMDREGTMS-NEFTFAVLLNAFAGMAALRHGDLLHARVEKLGIKNRVIVGNA 368

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           LI+ YSKCG +D +Y VF +M   RD+++WN +I GY  +G G+ AL L+  M   GE P
Sbjct: 369 LINMYSKCGCIDSSYDVFFDMRN-RDIITWNAMICGYSQHGLGKQALLLFQDMLSAGECP 427

Query: 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL 513
           +  T++ +L+AC H  L N+G    NQ+++  KV+P  EHY CVV +L RAG L +A   
Sbjct: 428 NHVTFVGVLSACAHLALVNEGFYYLNQLMKHFKVEPGLEHYTCVVAVLCRAGMLEEAENF 487

Query: 514 AGKLLEGMGPNIWRALLSGCVLH 536
                       WR LL+ C +H
Sbjct: 488 MRTTQVKWDVVAWRVLLNACNIH 510



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 128/516 (24%), Positives = 235/516 (45%), Gaps = 45/516 (8%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + L++ Y K  K++ A  LFDE+  ++VVS+++++ GY  +G H + +K F +M+ S   
Sbjct: 59  NSLINLYVKCSKLRLARYLFDEMSLRSVVSYNVLMGGYLHSGEHLEVVKLFKNMVSSLYQ 118

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL------ESDLFEGLKNPYLVSC---- 118
           PN +    VL A A    +      HG + KFGL      +S L       + V      
Sbjct: 119 PNEYVFTTVLSACAHSGRVFEGMQCHGFLFKFGLVFHHFVKSSLVHMYSKCFHVDLALQV 178

Query: 119 -----------------NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                            N+++   + +    +AV +       G+V ++VT ++V+  C 
Sbjct: 179 LESEHGNIDNDNDAFCYNSVLNALVESGRLGEAVEVLGRMVDEGVVWDSVTYVSVMGLCG 238

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            +    L   +H   +K GL  DV V + ++DM+    D+ +A ++F  ++ ++V+ WT 
Sbjct: 239 QIRDLGLGLQVHAQLLKGGLTFDVFVGSMLVDMFGKCGDVLSARKVFDGLQNRNVVVWTS 298

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           +M  ++      + L +   M +   + +      L++  A +  L+ G  LHA+V   G
Sbjct: 299 LMTAYLQNGEFEETLNLLSCMDREGTMSNEFTFAVLLNAFAGMAALRHGDLLHARVEKLG 358

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           +++ + + N++I MYSKCG +DSS  VF  +  + +++W A+I GY Q+G  ++AL  F 
Sbjct: 359 IKNRVIVGNALINMYSKCGCIDSSYDVFFDMRNRDIITWNAMICGYSQHGLGKQALLLFQ 418

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALE-----ICLQLHGIAFEAGFPRYRSVQNCLIS 396
            M     +  + +T V +L+A   LA +      +   +     E G   Y     C+++
Sbjct: 419 DM-LSAGECPNHVTFVGVLSACAHLALVNEGFYYLNQLMKHFKVEPGLEHY----TCVVA 473

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET---GEVP 453
              + G ++ A           DVV+W  ++     N H    L    K+ ET    +  
Sbjct: 474 VLCRAGMLEEAENFMRTTQVKWDVVAWRVLL--NACNIHRNYNLGT--KIAETILQMDPR 529

Query: 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKP 489
           D  TY  + N    A  + D + +  +M+ E  VK 
Sbjct: 530 DMGTYTLLSNMYAKAR-SWDSVTMIRKMMRERNVKK 564



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 143/313 (45%), Gaps = 36/313 (11%)

Query: 266 DLKRGKQLHAQVVLGGLQSELRLS---------NSIIAMYSKCGDLDSSRSVFNQITEKS 316
           +L  GK +H Q+++   QS    S         NS+I +Y KC  L  +R +F++++ +S
Sbjct: 27  NLNFGKSIHTQLLIRN-QSSTHHSYREFNIIQLNSLINLYVKCSKLRLARYLFDEMSLRS 85

Query: 317 LVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLH 376
           +VS+  ++ GY+ +G   E +  F  M        +     ++L+A      +   +Q H
Sbjct: 86  VVSYNVLMGGYLHSGEHLEVVKLFKNMVSSLYQP-NEYVFTTVLSACAHSGRVFEGMQCH 144

Query: 377 GIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFE-EMGFL---RDVVSWNTIIYGYGV 432
           G  F+ G   +  V++ L+  YSKC +VDLA  V E E G +    D   +N+++     
Sbjct: 145 GFLFKFGLVFHHFVKSSLVHMYSKCFHVDLALQVLESEHGNIDNDNDAFCYNSVLNALVE 204

Query: 433 NGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQE 492
           +G    A+ +  +M + G V DS TY+S++  CG       GL +  Q+++         
Sbjct: 205 SGRLGEAVEVLGRMVDEGVVWDSVTYVSVMGLCGQIRDLGLGLQVHAQLLKG-------- 256

Query: 493 HYGCVVDLLARAGCLSDASGLAG------KLLEGMGPN---IWRALLSGCVLHVGRFQDA 543
             G   D+      L D  G  G      K+ +G+      +W +L++   L  G F++ 
Sbjct: 257 --GLTFDVFV-GSMLVDMFGKCGDVLSARKVFDGLQNRNVVVWTSLMTA-YLQNGEFEET 312

Query: 544 EALRSGSQKKGII 556
             L S   ++G +
Sbjct: 313 LNLLSCMDREGTM 325



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 112/252 (44%), Gaps = 46/252 (18%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
            D +  S L+  + K G +  A  +FD +  +NVV W+ ++  Y  NG  E+++   S M
Sbjct: 260 FDVFVGSMLVDMFGKCGDVLSARKVFDGLQNRNVVVWTSLMTAYLQNGEFEETLNLLSCM 319

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES------------------ 104
              G + N FT   +L A AG+  L     +H  + K G+++                  
Sbjct: 320 DREGTMSNEFTFAVLLNAFAGMAALRHGDLLHARVEKLGIKNRVIVGNALINMYSKCGCI 379

Query: 105 ----DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
               D+F  ++N  +++ NA++ G+  + L +QA+LLF     +G  PN VT + V+  C
Sbjct: 380 DSSYDVFFDMRNRDIITWNAMICGYSQHGLGKQALLLFQDMLSAGECPNHVTFVGVLSAC 439

Query: 161 VAL-----GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMD-------LDAAIQIF 208
             L     G   L +L+    ++ G           L+ Y+C++        L+ A    
Sbjct: 440 AHLALVNEGFYYLNQLMKHFKVEPG-----------LEHYTCVVAVLCRAGMLEEAENFM 488

Query: 209 REMECK-DVISW 219
           R  + K DV++W
Sbjct: 489 RTTQVKWDVVAW 500


>gi|302782728|ref|XP_002973137.1| hypothetical protein SELMODRAFT_10568 [Selaginella moellendorffii]
 gi|300158890|gb|EFJ25511.1| hypothetical protein SELMODRAFT_10568 [Selaginella moellendorffii]
          Length = 624

 Score =  232 bits (591), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 159/564 (28%), Positives = 279/564 (49%), Gaps = 41/564 (7%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S +L+  Y K G + +A  + D +   +VV+W+ ++  Y+ NG  E++++A+  M+ +G+
Sbjct: 35  SIQLVQMYLKCGSLADAREVIDRVRIGDVVTWTRLLAAYARNGDCERAIQAYQEMLQAGV 94

Query: 68  LPNSFTMVGVL---VAAAGLQNLELARS-------------------IHGLMVKFGLESD 105
            PN  T+V +L   V  + L N    RS                   +H    +     D
Sbjct: 95  TPNKITIVTLLNACVEHSCLPNTAQIRSNVFEMGFLSDAVVATVLVSMHSRFGRMEDACD 154

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
            F  ++   +VS NA++  +  N   ++A+LLF   +  G +P+ V+ L V     A   
Sbjct: 155 AFREIQRHDVVSWNAMLWVYAENDFREEAMLLFREMQLEGSLPSKVSFLAVFNAVAAAED 214

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
                 +HGL ++ G+  D+++ N+++DMY     LD A+ +FR M  +D+ISWT M+  
Sbjct: 215 SLEARAMHGLFLRSGIEQDLALGNAIVDMYGKCGCLDGALDVFRSMPERDIISWTAMIAA 274

Query: 226 FVDFEYAGDALKIFREM-----RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
           FV       AL  FR M     R +++   T +L+ ++     L  L+ G+++H +++  
Sbjct: 275 FVQCGAMLGALDSFRLMQLQGIRPNKVTFLTASLIIVVDSLGSLRALQEGRRIHERIMEE 334

Query: 281 GLQSE-LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            L  + + L N++I MY +CGD+ S+   F ++  +   SW  +++    +   R  +  
Sbjct: 335 ELDRDYVILGNALINMYLRCGDVASAWECFRRMPARDESSWNVMLAACSDD--LRLVVTM 392

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAA-LEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
             +M+Q+   S   ITL++++ +    A+ L    ++H    EAG  R +S+ N L+  Y
Sbjct: 393 VGEMQQQGL-SPGKITLLALINSCVTAASTLPEARRVHARVVEAGLEREKSIANALVDMY 451

Query: 399 SKCGNVDLAYIVF--EEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
           SKCGN++ A  VF    +  L D V+WN ++ G+  +G    AL L+  M + G  P   
Sbjct: 452 SKCGNLEAASSVFFSSRLFELDDAVAWNALVLGHTQHGSWNEALGLFWAMQQQGVSPTEV 511

Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK 516
           + + +L +  HAG+  +G  +F  M  +  +  + EH GCVVDLL++ G L +A      
Sbjct: 512 SLVGVLASLSHAGMIQEGCRVFGSMEVDYGIGAAAEHRGCVVDLLSKVGWLEEAEEF--- 568

Query: 517 LLEGMGPNI----WRALLSGCVLH 536
           +  G G       W  LL  C LH
Sbjct: 569 MRSGCGSREDCVGWLTLLGACNLH 592



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 117/448 (26%), Positives = 221/448 (49%), Gaps = 11/448 (2%)

Query: 115 LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHG 174
           +V+   ++A +  N   ++A+  +     +G+ PN +T++T++  CV          I  
Sbjct: 63  VVTWTRLLAAYARNGDCERAIQAYQEMLQAGVTPNKITIVTLLNACVEHSCLPNTAQIRS 122

Query: 175 LTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGD 234
              ++G + D  V   ++ M+S    ++ A   FRE++  DV+SW  M+ ++ + ++  +
Sbjct: 123 NVFEMGFLSDAVVATVLVSMHSRFGRMEDACDAFREIQRHDVVSWNAMLWVYAENDFREE 182

Query: 235 ALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIA 294
           A+ +FREM+    +   V+ L + +  A   D    + +H   +  G++ +L L N+I+ 
Sbjct: 183 AMLLFREMQLEGSLPSKVSFLAVFNAVAAAEDSLEARAMHGLFLRSGIEQDLALGNAIVD 242

Query: 295 MYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE--KTDSVD 352
           MY KCG LD +  VF  + E+ ++SWTA+I+ +VQ G    AL+ F  M+ +  + + V 
Sbjct: 243 MYGKCGCLDGALDVFRSMPERDIISWTAMIAAFVQCGAMLGALDSFRLMQLQGIRPNKVT 302

Query: 353 SIT--LVSILTASGELAALEICLQLHGIAFEAGFPR-YRSVQNCLISSYSKCGNVDLAYI 409
            +T  L+ ++ + G L AL+   ++H    E    R Y  + N LI+ Y +CG+V  A+ 
Sbjct: 303 FLTASLIIVVDSLGSLRALQEGRRIHERIMEEELDRDYVILGNALINMYLRCGDVASAWE 362

Query: 410 VFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAG 469
            F  M   RD  SWN ++     +      + +  +M + G  P   T L+++N+C  A 
Sbjct: 363 CFRRMP-ARDESSWNVML--AACSDDLRLVVTMVGEMQQQGLSPGKITLLALINSCVTAA 419

Query: 470 LTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL--AGKLLEGMGPNIWR 527
            T       +  + E  ++  +     +VD+ ++ G L  AS +  + +L E      W 
Sbjct: 420 STLPEARRVHARVVEAGLEREKSIANALVDMYSKCGNLEAASSVFFSSRLFELDDAVAWN 479

Query: 528 ALLSGCVLHVGRFQDAEALRSGSQKKGI 555
           AL+ G   H G + +A  L    Q++G+
Sbjct: 480 ALVLGHTQH-GSWNEALGLFWAMQQQGV 506



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 139/503 (27%), Positives = 241/503 (47%), Gaps = 47/503 (9%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D   ++ L+S + + G++++A + F EI   +VVSW+ ++  Y+ N F E++M  F  M 
Sbjct: 132 DAVVATVLVSMHSRFGRMEDACDAFREIQRHDVVSWNAMLWVYAENDFREEAMLLFREMQ 191

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------- 106
           L G LP+  + + V  A A  ++   AR++HGL ++ G+E DL                 
Sbjct: 192 LEGSLPSKVSFLAVFNAVAAAEDSLEARAMHGLFLRSGIEQDLALGNAIVDMYGKCGCLD 251

Query: 107 -----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLT--VIRG 159
                F  +    ++S  A++A F+       A+  F   +  G+ PN VT LT  +I  
Sbjct: 252 GALDVFRSMPERDIISWTAMIAAFVQCGAMLGALDSFRLMQLQGIRPNKVTFLTASLIIV 311

Query: 160 CVALGS-RALCE--LIHGLTIKLGLILD-VSVNNSVLDMYSCLMDLDAAIQIFREMECKD 215
             +LGS RAL E   IH   ++  L  D V + N++++MY    D+ +A + FR M  +D
Sbjct: 312 VDSLGSLRALQEGRRIHERIMEEELDRDYVILGNALINMYLRCGDVASAWECFRRMPARD 371

Query: 216 VISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLI-SVNAILGDLKRGKQLH 274
             SW  M+    D       + +  EM++  +    + LL LI S       L   +++H
Sbjct: 372 ESSWNVMLAACSDDLRL--VVTMVGEMQQQGLSPGKITLLALINSCVTAASTLPEARRVH 429

Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVF--NQITE-KSLVSWTAIISGYVQNG 331
           A+VV  GL+ E  ++N+++ MYSKCG+L+++ SVF  +++ E    V+W A++ G+ Q+G
Sbjct: 430 ARVVEAGLEREKSIANALVDMYSKCGNLEAASSVFFSSRLFELDDAVAWNALVLGHTQHG 489

Query: 332 CAREALNQFIKMRQEKTDSVDSITLVSILTASGELAAL-EICLQLHGIAFEAGFPRYRSV 390
              EAL  F  M+Q+     + ++LV +L +      + E C     +  + G       
Sbjct: 490 SWNEALGLFWAMQQQGVSPTE-VSLVGVLASLSHAGMIQEGCRVFGSMEVDYGIGAAAEH 548

Query: 391 QNCLISSYSKCGNVDLAYIVFEE-MGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
           + C++   SK G ++ A        G   D V W T++    ++G  E  L    ++ E 
Sbjct: 549 RGCVVDLLSKVGWLEEAEEFMRSGCGSREDCVGWLTLLGACNLHGDVERGLRAAFRLLE- 607

Query: 450 GEVPDSSTYLSILNACGHAGLTN 472
                    L  +N+  H  L+N
Sbjct: 608 ---------LDSINSAAHVILSN 621



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 160/333 (48%), Gaps = 15/333 (4%)

Query: 163 LGSRALCE--LIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
           + SRAL +   +H L  + G   + +++  ++ MY     L  A ++   +   DV++WT
Sbjct: 8   INSRALAQGKRVHQLAQQKGGETEKALSIQLVQMYLKCGSLADAREVIDRVRIGDVVTWT 67

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
           R++  +        A++ ++EM ++ +  + + ++ L++       L    Q+ + V   
Sbjct: 68  RLLAAYARNGDCERAIQAYQEMLQAGVTPNKITIVTLLNACVEHSCLPNTAQIRSNVFEM 127

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           G  S+  ++  +++M+S+ G ++ +   F +I    +VSW A++  Y +N    EA+  F
Sbjct: 128 GFLSDAVVATVLVSMHSRFGRMEDACDAFREIQRHDVVSWNAMLWVYAENDFREEAMLLF 187

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQ---LHGIAFEAGFPRYRSVQNCLISS 397
            +M+ E +      + VS L     +AA E  L+   +HG+   +G  +  ++ N ++  
Sbjct: 188 REMQLEGSLP----SKVSFLAVFNAVAAAEDSLEARAMHGLFLRSGIEQDLALGNAIVDM 243

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           Y KCG +D A  VF  M   RD++SW  +I  +   G    AL  +  M   G  P+  T
Sbjct: 244 YGKCGCLDGALDVFRSMPE-RDIISWTAMIAAFVQCGAMLGALDSFRLMQLQGIRPNKVT 302

Query: 458 YLS-----ILNACGHAGLTNDGLVIFNQMIEEN 485
           +L+     ++++ G      +G  I  +++EE 
Sbjct: 303 FLTASLIIVVDSLGSLRALQEGRRIHERIMEEE 335


>gi|359492976|ref|XP_002283668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 762

 Score =  232 bits (591), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 145/492 (29%), Positives = 252/492 (51%), Gaps = 30/492 (6%)

Query: 55  SMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPY 114
           + K  +H++ +G   ++F M  ++   A    +E AR +             F+ L    
Sbjct: 88  AQKIHAHIVKTGAHKDAFLMTFLVNVYAKCGTMETARKV-------------FDELPRRN 134

Query: 115 LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHG 174
           +VS   ++ G++++   + AV +F     +G  P   T+ T +     L S+ L + IHG
Sbjct: 135 VVSWTTLMTGYVHDSKPELAVQVFREMLEAGAYPTNYTLGTALSASSDLHSKELGKQIHG 194

Query: 175 LTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGD 234
            +IK  +  D S+ NS+  +YS    L+ A++ FR +  K+VISWT ++  + D   A  
Sbjct: 195 YSIKYRIEFDASIGNSLCSLYSKCGSLECAVKAFRRIRDKNVISWTTVISAWGDNGEAAT 254

Query: 235 ALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIA 294
            L+ F EM    +  +   L + +S+  ++  L  G Q+H+  +  G +S L + NSI+ 
Sbjct: 255 GLQFFVEMLSECVEPNEFTLTSALSLCCVMQSLDIGTQIHSLTIKLGFESNLPIKNSIMY 314

Query: 295 MYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQ-----------NGCAREALNQFIKM 343
           +Y KCG +  ++ +F+++   SLV+W A+I+G+ +           + C  EAL+ F+K+
Sbjct: 315 LYLKCGWIHEAKKLFDEMETISLVTWNAMIAGHARMMDFAKDDLAAHQCGTEALSIFLKL 374

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
            +      D  T  S+L+    L ALE   Q+H    + GF     V   L++ Y+KCG+
Sbjct: 375 NRSGMKP-DLFTFSSVLSVCSSLVALEQGEQVHAQTIKTGFLSDVVVGTALVNMYNKCGS 433

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           ++ A   F EM  +R ++SW ++I GY  NG  + AL L+  M   G  P+  T++ +L+
Sbjct: 434 IERASKAFVEMS-IRTLISWTSMITGYAQNGQPQQALLLFEDMRLAGVRPNKITFVGVLS 492

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
           AC HAG+ ++ L  F  M  E K+ P  +HY C++D+  R G L +A     ++   + P
Sbjct: 493 ACSHAGMVDEALDYFQMMKNEYKITPVMDHYACLIDMFVRLGRLDEAFDFIKEM--DLEP 550

Query: 524 N--IWRALLSGC 533
           N  IW  L++GC
Sbjct: 551 NEFIWSILIAGC 562



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 134/517 (25%), Positives = 246/517 (47%), Gaps = 38/517 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L++ Y K G ++ A  +FDE+P +NVVSW+ ++ GY  +   E +++ F  M+
Sbjct: 103 DAFLMTFLVNVYAKCGTMETARKVFDELPRRNVVSWTTLMTGYVHDSKPELAVQVFREML 162

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
            +G  P ++T+   L A++ L + EL + IHG  +K+ +E D                  
Sbjct: 163 EAGAYPTNYTLGTALSASSDLHSKELGKQIHGYSIKYRIEFDASIGNSLCSLYSKCGSLE 222

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                F  +++  ++S   +++ + +N      +  F       + PN  T+ + +  C 
Sbjct: 223 CAVKAFRRIRDKNVISWTTVISAWGDNGEAATGLQFFVEMLSECVEPNEFTLTSALSLCC 282

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW-- 219
            + S  +   IH LTIKLG   ++ + NS++ +Y     +  A ++F EME   +++W  
Sbjct: 283 VMQSLDIGTQIHSLTIKLGFESNLPIKNSIMYLYLKCGWIHEAKKLFDEMETISLVTWNA 342

Query: 220 -----TRMMGLFVD----FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG 270
                 RMM    D     +   +AL IF ++ +S +  D     +++SV + L  L++G
Sbjct: 343 MIAGHARMMDFAKDDLAAHQCGTEALSIFLKLNRSGMKPDLFTFSSVLSVCSSLVALEQG 402

Query: 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
           +Q+HAQ +  G  S++ +  +++ MY+KCG ++ +   F +++ ++L+SWT++I+GY QN
Sbjct: 403 EQVHAQTIKTGFLSDVVVGTALVNMYNKCGSIERASKAFVEMSIRTLISWTSMITGYAQN 462

Query: 331 GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQ-LHGIAFEAGFPRYRS 389
           G  ++AL  F  MR       + IT V +L+A      ++  L     +  E        
Sbjct: 463 GQPQQALLLFEDMRLAGVRP-NKITFVGVLSACSHAGMVDEALDYFQMMKNEYKITPVMD 521

Query: 390 VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
              CLI  + + G +D A+   +EM    +   W+ +I   G    G+  L  Y      
Sbjct: 522 HYACLIDMFVRLGRLDEAFDFIKEMDLEPNEFIWSILI--AGCRSQGKLELGFYAAEQLL 579

Query: 450 GEVP-DSSTYLSILNACGHAGLTNDGLVIFNQMIEEN 485
              P D+ TY  +LN    AG   +   +   M EE 
Sbjct: 580 NLKPKDTETYNLLLNMYLSAGKWKEVSRVRKMMKEEK 616



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 176/339 (51%), Gaps = 17/339 (5%)

Query: 131 FQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNS 190
           F++A+   +F R    V +A   + +++ C+     +  + IH   +K G   D  +   
Sbjct: 54  FREAL---SFIREGTKVESAF-YVPILQECIDKKLVSDAQKIHAHIVKTGAHKDAFLMTF 109

Query: 191 VLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICD 250
           ++++Y+    ++ A ++F E+  ++V+SWT +M  +V       A+++FREM ++     
Sbjct: 110 LVNVYAKCGTMETARKVFDELPRRNVVSWTTLMTGYVHDSKPELAVQVFREMLEAGAYPT 169

Query: 251 TVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFN 310
              L   +S ++ L   + GKQ+H   +   ++ +  + NS+ ++YSKCG L+ +   F 
Sbjct: 170 NYTLGTALSASSDLHSKELGKQIHGYSIKYRIEFDASIGNSLCSLYSKCGSLECAVKAFR 229

Query: 311 QITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALE 370
           +I +K+++SWT +IS +  NG A   L  F++M  E  +  +  TL S L+    + +L+
Sbjct: 230 RIRDKNVISWTTVISAWGDNGEAATGLQFFVEMLSECVEP-NEFTLTSALSLCCVMQSLD 288

Query: 371 ICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGY 430
           I  Q+H +  + GF     ++N ++  Y KCG +  A  +F+EM  +  +V+WN +I G+
Sbjct: 289 IGTQIHSLTIKLGFESNLPIKNSIMYLYLKCGWIHEAKKLFDEMETI-SLVTWNAMIAGH 347

Query: 431 G---------VNGH--GETALALYHKMTETGEVPDSSTY 458
                     +  H  G  AL+++ K+  +G  PD  T+
Sbjct: 348 ARMMDFAKDDLAAHQCGTEALSIFLKLNRSGMKPDLFTF 386



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 68/131 (51%), Gaps = 6/131 (4%)

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC 393
           REAL+ FI+    +   V+S   V IL    +   +    ++H    + G  +   +   
Sbjct: 55  REALS-FIR----EGTKVESAFYVPILQECIDKKLVSDAQKIHAHIVKTGAHKDAFLMTF 109

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           L++ Y+KCG ++ A  VF+E+   R+VVSW T++ GY  +   E A+ ++ +M E G  P
Sbjct: 110 LVNVYAKCGTMETARKVFDELP-RRNVVSWTTLMTGYVHDSKPELAVQVFREMLEAGAYP 168

Query: 454 DSSTYLSILNA 464
            + T  + L+A
Sbjct: 169 TNYTLGTALSA 179


>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  232 bits (591), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 154/554 (27%), Positives = 266/554 (48%), Gaps = 34/554 (6%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + L+  Y K+   ++   +FDE+  KNVVSW+ ++ GY+ NG +++ +   + M + G+ 
Sbjct: 143 TSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVN 202

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPYL----------- 115
           PN FT   VL A A    +E    +H ++VK G E   F    L   YL           
Sbjct: 203 PNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAV 262

Query: 116 ---------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
                    V+ N ++ G+     + +   +F+  R +G+  +     T ++ C      
Sbjct: 263 FDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQREL 322

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC-KDVISWTRMMGL 225
              + +H   +K G      +  +++  YS    +D A ++F   +   +V++WT M+G 
Sbjct: 323 NFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGG 382

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG--KQLHAQVVLGGLQ 283
           FV       A+ +F +M +  +        N  + + +L         QLHAQ++    +
Sbjct: 383 FVQNNNNEKAVDLFCQMSREGV------RPNHFTYSTVLAGKPSSLLSQLHAQIIKAYYE 436

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
               ++ +++  Y K G++  S  VF  I  K +V+W+A+++G  Q   + +A+  FI++
Sbjct: 437 KVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQL 496

Query: 344 RQEKTDSVDSITLVSILTA-SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
            +E     +  T  S++ A S   A +E   Q+H  A ++G      V + L++ YSK G
Sbjct: 497 VKEGVKP-NEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKG 555

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
           N++ A  VF      RD+VSWN++I GYG +G  + AL ++  M   G   D  T++ +L
Sbjct: 556 NIESAEKVFTRQE-ERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVL 614

Query: 463 NACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMG 522
            AC HAGL  +G   FN MI++  +    EHY C+VDL +RAG    A  +   +     
Sbjct: 615 TACTHAGLVEEGEKYFNIMIKDYHIDKKIEHYSCMVDLYSRAGMFDKAMDIINGMPFPAS 674

Query: 523 PNIWRALLSGCVLH 536
           P IWR LL+ C +H
Sbjct: 675 PTIWRTLLAACRVH 688



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 125/510 (24%), Positives = 235/510 (46%), Gaps = 43/510 (8%)

Query: 20  KIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLV 79
           + + A  LFDE P K++  ++ ++  +S N    +++  F  +  SGL  +  T+   L 
Sbjct: 53  RPRYAHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALK 112

Query: 80  AAAGLQNLELARSIHGLMVKFGLESDL---------------FE---------GLKNPYL 115
               L +  + R +H   +K G   D+               FE         G+KN  +
Sbjct: 113 VCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKN--V 170

Query: 116 VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCE---LI 172
           VS  ++++G+  N L  + + L N  +  G+ PN  T  TV+    AL   ++ E    +
Sbjct: 171 VSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLG---ALADESIIEGGVQV 227

Query: 173 HGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYA 232
           H + +K G      V N+++ MY     +  A  +F  M  +D ++W  M+G +    + 
Sbjct: 228 HAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFY 287

Query: 233 GDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSI 292
            +  ++F  MR + +          + + +   +L   KQLH  VV  G +    +  ++
Sbjct: 288 LEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTAL 347

Query: 293 IAMYSKCGDLDSSRSVFNQI-TEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
           +  YSKC  +D +  +F+      ++V+WTA+I G+VQN    +A++ F +M +E     
Sbjct: 348 MVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRP- 406

Query: 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVF 411
           +  T  ++L  +G+ ++L    QLH    +A + +  SV   L+ +Y K GNV  +  VF
Sbjct: 407 NHFTYSTVL--AGKPSSL--LSQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVF 462

Query: 412 EEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLT 471
             +   +D+V+W+ ++ G       E A+ ++ ++ + G  P+  T+ S++NAC  +  T
Sbjct: 463 YSIP-AKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAAT 521

Query: 472 NDGLVIFNQMIEENKVKPSQEHYGCVVDLL 501
               V   + I    VK  + +  CV   L
Sbjct: 522 ----VEHGKQIHATAVKSGKSNALCVSSAL 547



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 106/227 (46%), Gaps = 29/227 (12%)

Query: 5   PYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML 64
           P  ++ LL  Y K+G + E+  +F  IP K++V+WS ++ G +     EK+M+ F  ++ 
Sbjct: 439 PSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVK 498

Query: 65  SGLLPNSFTMVGVLVA-AAGLQNLELARSIHGLMVKFG--------------------LE 103
            G+ PN +T   V+ A ++    +E  + IH   VK G                    +E
Sbjct: 499 EGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIE 558

Query: 104 S--DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
           S   +F   +   +VS N+++ G+  +   ++A+ +F   +  GL  + VT + V+  C 
Sbjct: 559 SAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACT 618

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIF 208
             G     E    + IK     D  ++  + + YSC++DL +   +F
Sbjct: 619 HAGLVEEGEKYFNIMIK-----DYHIDKKI-EHYSCMVDLYSRAGMF 659


>gi|10092182|gb|AAG12601.1|AC068900_7 hypothetical protein; 7123-4412 [Arabidopsis thaliana]
          Length = 861

 Score =  232 bits (591), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 167/583 (28%), Positives = 266/583 (45%), Gaps = 45/583 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D   +S LL  Y K  +  E+  +F  IPEKN VSWS +I G   N     ++K F  M 
Sbjct: 172 DVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQ 231

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
                 +      VL + A L  L L   +H   +K    +D                  
Sbjct: 232 KVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQ 291

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               LF+  +N    S NA++ G+   +   +A+LLF+    SGL  + +++  V R C 
Sbjct: 292 DAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACA 351

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            +   +    I+GL IK  L LDV V N+ +DMY     L  A ++F EM  +D +SW  
Sbjct: 352 LVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNA 411

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++          + L +F  M +SRI  D     +++      G L  G ++H+ +V  G
Sbjct: 412 IIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKA-CTGGSLGYGMEIHSSIVKSG 470

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKS--------------------LVSWT 321
           + S   +  S+I MYSKCG ++ +  + ++  +++                     VSW 
Sbjct: 471 MASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWN 530

Query: 322 AIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFE 381
           +IISGYV    + +A   F +M  E   + D  T  ++L     LA+  +  Q+H    +
Sbjct: 531 SIISGYVMKEQSEDAQMLFTRM-MEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIK 589

Query: 382 AGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALA 441
                   + + L+  YSKCG++  + ++FE+    RD V+WN +I GY  +G GE A+ 
Sbjct: 590 KELQSDVYICSTLVDMYSKCGDLHDSRLMFEK-SLRRDFVTWNAMICGYAHHGKGEEAIQ 648

Query: 442 LYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLL 501
           L+ +M      P+  T++SIL AC H GL + GL  F  M  +  + P   HY  +VD+L
Sbjct: 649 LFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDIL 708

Query: 502 ARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAE 544
            ++G +  A  L  ++       IWR LL  C +H    + AE
Sbjct: 709 GKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAE 751



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 158/586 (26%), Positives = 270/586 (46%), Gaps = 50/586 (8%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  D  + +K+++ Y KS  + +A + F+ +P ++VVSW+ ++ GY  NG   KS++ F 
Sbjct: 68  PLRDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFV 127

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--------------- 105
            M   G+  +  T   +L   + L++  L   IHG++V+ G ++D               
Sbjct: 128 DMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGK 187

Query: 106 -------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                  +F+G+     VS +AI+AG + N L   A+  F   +      +     +V+R
Sbjct: 188 RFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLR 247

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C AL    L   +H   +K     D  V  + LDMY+   ++  A  +F   E  +  S
Sbjct: 248 SCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQS 307

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           +  M+  +   E+   AL +F  +  S +  D ++L  +    A++  L  G Q++   +
Sbjct: 308 YNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAI 367

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
              L  ++ ++N+ I MY KC  L  +  VF+++  +  VSW AII+ + QNG   E L 
Sbjct: 368 KSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLF 427

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
            F+ M + + +  D  T  SIL A     +L   +++H    ++G     SV   LI  Y
Sbjct: 428 LFVSMLRSRIEP-DEFTFGSILKACTG-GSLGYGMEIHSSIVKSGMASNSSVGCSLIDMY 485

Query: 399 SKCGNVDLAYIV-------------FEEMGFLRD------VVSWNTIIYGYGVNGHGETA 439
           SKCG ++ A  +              EE+  + +       VSWN+II GY +    E A
Sbjct: 486 SKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDA 545

Query: 440 LALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGC--V 497
             L+ +M E G  PD  TY ++L+ C +      G  I  Q+I   K +   + Y C  +
Sbjct: 546 QMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVI---KKELQSDVYICSTL 602

Query: 498 VDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDA 543
           VD+ ++ G L D+  +  K L       W A++ G   H G+ ++A
Sbjct: 603 VDMYSKCGDLHDSRLMFEKSLR-RDFVTWNAMICGYAHH-GKGEEA 646



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 127/518 (24%), Positives = 241/518 (46%), Gaps = 36/518 (6%)

Query: 49  NGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELAR------------SIHGL 96
            G  E   +A +HM++SG  P +F +  +L      ++   A             S + +
Sbjct: 19  QGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVVSWNKM 78

Query: 97  MVKFGLESDLFEG------LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNA 150
           +  +   +D+F+       +    +VS N++++G++ N    +++ +F      G+  + 
Sbjct: 79  INGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDG 138

Query: 151 VTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFRE 210
            T   +++ C  L   +L   IHG+ +++G   DV   +++LDMY+       ++++F+ 
Sbjct: 139 RTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQG 198

Query: 211 MECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG 270
           +  K+ +SW+ ++   V       ALK F+EM+K           +++   A L +L+ G
Sbjct: 199 IPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLG 258

Query: 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
            QLHA  +     ++  +  + + MY+KC ++  ++ +F+     +  S+ A+I+GY Q 
Sbjct: 259 GQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQE 318

Query: 331 GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV 390
               +AL  F ++        D I+L  +  A   +  L   LQ++G+A ++       V
Sbjct: 319 EHGFKALLLFHRLMSSGL-GFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCV 377

Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
            N  I  Y KC  +  A+ VF+EM   RD VSWN II  +  NG G   L L+  M  + 
Sbjct: 378 ANAAIDMYGKCQALAEAFRVFDEMR-RRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSR 436

Query: 451 EVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGC-VVDLLARAGCLSD 509
             PD  T+ SIL AC   G    G+ I + +++      S    GC ++D+ ++ G + +
Sbjct: 437 IEPDEFTFGSILKACT-GGSLGYGMEIHSSIVKSGMA--SNSSVGCSLIDMYSKCGMIEE 493

Query: 510 ASGLAGKLLEGMGPNIWRALLSGCV-----LHVGRFQD 542
           A  +  +  +       RA +SG +     +H  R Q+
Sbjct: 494 AEKIHSRFFQ-------RANVSGTMEELEKMHNKRLQE 524


>gi|242051555|ref|XP_002454923.1| hypothetical protein SORBIDRAFT_03g001460 [Sorghum bicolor]
 gi|241926898|gb|EES00043.1| hypothetical protein SORBIDRAFT_03g001460 [Sorghum bicolor]
          Length = 741

 Score =  232 bits (591), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 166/542 (30%), Positives = 275/542 (50%), Gaps = 42/542 (7%)

Query: 27  LFDEIPE--KNVVSWSIVIHGYSINGFHEKSMKAFSH---MMLS--GLLPNSFTMVGVLV 79
           +F +IP   ++V SW+ +++  S      + + A SH   MM S   +LP   +   V  
Sbjct: 73  VFADIPAGLRDVASWNSLLNPLS----RHQPLAALSHFRSMMSSTDAVLPTPHSFAAVFT 128

Query: 80  AAA----------------------GLQNLELARSIHGLMVKFGLESD---LFEGLKNPY 114
           AAA                      G  N+ ++ ++  +  K G  SD   +F+ + +  
Sbjct: 129 AAARVPSASAGAVAHAFACKLPSSSGSNNVFVSTALLNMYCKLGAISDARRVFDQMPHRN 188

Query: 115 LVSCNAIVAGFINNKLFQQAVLLFNF-FRGSGLVPNAVTMLTVIRGC-VALGSRALCELI 172
            VS  A+V+G+   K  ++A  LF    +   L  N      V+    V LG     +L 
Sbjct: 189 AVSWAAMVSGYATGKCSEEAFELFRLMLQECPLEKNEFVATAVLSAVSVPLGLLIGVQL- 247

Query: 173 HGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYA 232
           HGL +K GL+  VSV NS++ MY+    +DAA+ +F   + ++ I+W+ M+  +     A
Sbjct: 248 HGLVLKDGLVGFVSVENSLVTMYAKAECMDAAMAVFGSSKERNSITWSAMITGYAQNGEA 307

Query: 233 GDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSI 292
             A  +F +M  +         + +++ ++ +G L  GKQ H  +V  G + ++ + +++
Sbjct: 308 DCAATMFLQMHSAGFSPTEFTFVGILNASSDMGALVVGKQAHGLMVKLGFERQVYVKSAL 367

Query: 293 IAMYSKCGDLDSSRSVFNQITE-KSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
           + MY+KCG    ++  F+Q+ +   +V WTA+I+G+VQNG   EAL  + +M +E     
Sbjct: 368 VDMYAKCGCTGDAKDGFHQLYDVDDVVIWTAMITGHVQNGEHEEALMLYSRMDKEGV-MP 426

Query: 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVF 411
             +T+ S+L A   LAALE   QLH    + GF    SV   L + YSKCGN++ + +VF
Sbjct: 427 SYLTVTSVLRACACLAALEPGKQLHAQILKCGFGLGGSVGTALSTMYSKCGNLEDSMVVF 486

Query: 412 EEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLT 471
             M   RD++SWN+II G+  +G G  AL L+ +M   G  PD  T++++L AC H GL 
Sbjct: 487 RRMPD-RDIISWNSIISGFSQHGRGRDALDLFEEMKLEGIAPDHITFINVLCACSHMGLV 545

Query: 472 NDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLS 531
           + G   F  M ++  + P  +HY C+VD+L+RAG L +A      +    G  +WR +L 
Sbjct: 546 DRGWFYFRAMSKDYGLIPKLDHYACIVDILSRAGQLKEAKDFIESITIDHGTCLWRIVLG 605

Query: 532 GC 533
            C
Sbjct: 606 AC 607



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 110/385 (28%), Positives = 193/385 (50%), Gaps = 25/385 (6%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           + S+ LL+ Y K G I +A  +FD++P +N VSW+ ++ GY+     E++ + F  M+  
Sbjct: 159 FVSTALLNMYCKLGAISDARRVFDQMPHRNAVSWAAMVSGYATGKCSEEAFELFRLMLQE 218

Query: 66  -GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL------ESDL------------ 106
             L  N F    VL A +    L +   +HGL++K GL      E+ L            
Sbjct: 219 CPLEKNEFVATAVLSAVSVPLGLLIGVQLHGLVLKDGLVGFVSVENSLVTMYAKAECMDA 278

Query: 107 ----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA 162
               F   K    ++ +A++ G+  N     A  +F     +G  P   T + ++     
Sbjct: 279 AMAVFGSSKERNSITWSAMITGYAQNGEADCAATMFLQMHSAGFSPTEFTFVGILNASSD 338

Query: 163 LGSRALCELIHGLTIKLGLILDVSVNNSVLDMYS-CLMDLDAAIQIFREMECKDVISWTR 221
           +G+  + +  HGL +KLG    V V ++++DMY+ C    DA     +  +  DV+ WT 
Sbjct: 339 MGALVVGKQAHGLMVKLGFERQVYVKSALVDMYAKCGCTGDAKDGFHQLYDVDDVVIWTA 398

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+   V      +AL ++  M K  ++   + + +++   A L  L+ GKQLHAQ++  G
Sbjct: 399 MITGHVQNGEHEEALMLYSRMDKEGVMPSYLTVTSVLRACACLAALEPGKQLHAQILKCG 458

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
                 +  ++  MYSKCG+L+ S  VF ++ ++ ++SW +IISG+ Q+G  R+AL+ F 
Sbjct: 459 FGLGGSVGTALSTMYSKCGNLEDSMVVFRRMPDRDIISWNSIISGFSQHGRGRDALDLFE 518

Query: 342 KMRQEKTDSVDSITLVSILTASGEL 366
           +M+ E   + D IT +++L A   +
Sbjct: 519 EMKLEGI-APDHITFINVLCACSHM 542



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 113/415 (27%), Positives = 193/415 (46%), Gaps = 21/415 (5%)

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMD--LDAAIQIFREMEC--KDVISWT 220
           +R   + +HG  +K G      V+NS++  Y       L AA  +F ++    +DV SW 
Sbjct: 29  TRRAGDALHGWALKSGAASHTPVSNSLITFYCSPPRPLLGAAFAVFADIPAGLRDVASWN 88

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSR--IICDTVALLNLISVNAILGDLKRGKQLHA--- 275
            ++      +    AL  FR M  S   ++    +   + +  A +     G   HA   
Sbjct: 89  SLLNPLSRHQPLA-ALSHFRSMMSSTDAVLPTPHSFAAVFTAAARVPSASAGAVAHAFAC 147

Query: 276 QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
           ++      + + +S +++ MY K G +  +R VF+Q+  ++ VSW A++SGY    C+ E
Sbjct: 148 KLPSSSGSNNVFVSTALLNMYCKLGAISDARRVFDQMPHRNAVSWAAMVSGYATGKCSEE 207

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLI 395
           A   F  M QE     +     ++L+A      L I +QLHG+  + G   + SV+N L+
Sbjct: 208 AFELFRLMLQECPLEKNEFVATAVLSAVSVPLGLLIGVQLHGLVLKDGLVGFVSVENSLV 267

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
           + Y+K   +D A  VF      R+ ++W+ +I GY  NG  + A  ++ +M   G  P  
Sbjct: 268 TMYAKAECMDAAMAVFGSSK-ERNSITWSAMITGYAQNGEADCAATMFLQMHSAGFSPTE 326

Query: 456 STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY--GCVVDLLARAGCLSDASGL 513
            T++ ILNA    G    G      M+   K+   ++ Y    +VD+ A+ GC  DA   
Sbjct: 327 FTFVGILNASSDMGALVVGKQAHGLMV---KLGFERQVYVKSALVDMYAKCGCTGDAKDG 383

Query: 514 AGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFLNSTS 568
             +L +     IW A+++G V + G  ++A  L S   K+G++     S+L  TS
Sbjct: 384 FHQLYDVDDVVIWTAMITGHVQN-GEHEEALMLYSRMDKEGVMP----SYLTVTS 433



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 157/327 (48%), Gaps = 24/327 (7%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L++ Y K+  +  A  +F    E+N ++WS +I GY+ NG  + +   F  M  +G  P 
Sbjct: 266 LVTMYAKAECMDAAMAVFGSSKERNSITWSAMITGYAQNGEADCAATMFLQMHSAGFSPT 325

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF-------------------EGLK 111
            FT VG+L A++ +  L + +  HGLMVK G E  ++                   +G  
Sbjct: 326 EFTFVGILNASSDMGALVVGKQAHGLMVKLGFERQVYVKSALVDMYAKCGCTGDAKDGFH 385

Query: 112 NPY----LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRA 167
             Y    +V   A++ G + N   ++A++L++     G++P+ +T+ +V+R C  L +  
Sbjct: 386 QLYDVDDVVIWTAMITGHVQNGEHEEALMLYSRMDKEGVMPSYLTVTSVLRACACLAALE 445

Query: 168 LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
             + +H   +K G  L  SV  ++  MYS   +L+ ++ +FR M  +D+ISW  ++  F 
Sbjct: 446 PGKQLHAQILKCGFGLGGSVGTALSTMYSKCGNLEDSMVVFRRMPDRDIISWNSIISGFS 505

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGK-QLHAQVVLGGLQSEL 286
                 DAL +F EM+   I  D +  +N++   + +G + RG     A     GL  +L
Sbjct: 506 QHGRGRDALDLFEEMKLEGIAPDHITFINVLCACSHMGLVDRGWFYFRAMSKDYGLIPKL 565

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQIT 313
                I+ + S+ G L  ++     IT
Sbjct: 566 DHYACIVDILSRAGQLKEAKDFIESIT 592


>gi|242041975|ref|XP_002468382.1| hypothetical protein SORBIDRAFT_01g044940 [Sorghum bicolor]
 gi|241922236|gb|EER95380.1| hypothetical protein SORBIDRAFT_01g044940 [Sorghum bicolor]
          Length = 1026

 Score =  231 bits (590), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 163/613 (26%), Positives = 289/613 (47%), Gaps = 60/613 (9%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           S L+S Y K GK+  +  LF    EKN + W+ +I GY +N     ++ AF  M ++G+ 
Sbjct: 381 SALVSMYSKLGKLDSSSLLFCCFTEKNNILWNSMISGYLVNNEWNMALDAFCKMQIAGVA 440

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES----------------------DL 106
           P++ T++ V+      ++L +A+SIH   V+   ES                       L
Sbjct: 441 PDATTVINVISGCRYTKDLHVAKSIHAYAVRNRFESYQSVMNALLAMYADCGDISTSYTL 500

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           F+ ++   L+S N +++GF      + ++ LF       +  + VT++ +I         
Sbjct: 501 FQKMEVRMLISWNTMISGFAEIGDSETSLTLFCQMFHEEVWFDLVTLIGLISSLSVSEDA 560

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
            + E +H L IK G I DVS+ N+++ MY+    ++A  Q+F     ++ I++  +M  +
Sbjct: 561 IVGESVHSLAIKSGCISDVSLTNALITMYANCGIVEAGQQLFNSFCSRNTITYNALMSGY 620

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
                +   L +F +M K+    + V LLNL+ V        +GK +H+  V    + E 
Sbjct: 621 RKNNVSEKILPLFTQMVKNDEKPNLVTLLNLLPV---CQSQLQGKCIHSYAVRNFTRLET 677

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            L  S + MYS+  +++  R++F+ ++ ++L+ W A +S  VQ   A   ++ F  M   
Sbjct: 678 PLFTSAMGMYSRFNNIEYCRTIFSLVSARNLIVWNAFLSACVQCKQADMVVDYFKHMLFL 737

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
                D +T++++++A  +L   +    +  +  + GF     V N LI ++S+CG++  
Sbjct: 738 NVRP-DEVTMLALISACSQLGNADFAACIMAVILQKGFSMNILVLNALIDTHSRCGSISF 796

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           A  +F+     +D V+W  +I  Y ++G+GE AL L+  M ++G  PD  T++SIL+AC 
Sbjct: 797 ARELFDS-SVEKDSVTWGAMINAYSMHGNGEAALDLFSMMIDSGVDPDDITFVSILSACS 855

Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIW 526
           H GL   G  +F  +  ++ + P  EHY C+VDLL R G L +A  +   +      N+ 
Sbjct: 856 HNGLVEQGRTLFKSLQADHGITPRMEHYACMVDLLGRTGHLDEAYDIVRSMPFTPSDNLL 915

Query: 527 RALLSGCVLH---------------------------------VGRFQDAEALRSGSQKK 553
            +LL  C  H                                  G++ D E LR   + K
Sbjct: 916 ESLLGACRFHGNYKIGESVGKLLIKSEYGKSRSYVMLSNIYASAGKWSDCEQLRLDMEAK 975

Query: 554 GIIKIPGISFLNS 566
           G+ K  G+  L S
Sbjct: 976 GLRKNVGVRKLES 988



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 128/468 (27%), Positives = 243/468 (51%), Gaps = 29/468 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEI--PEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           D +  + L+  Y   GK   A  LF E       V S ++V+  +S +GFH + +  +  
Sbjct: 72  DRFVVTGLVERYVSFGKPASAALLFAEAYRGRPAVYSLNLVVRCFSDHGFHRELLDLYRG 131

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL--------------- 106
             L G   ++FT   V+ A      L+L R +H  +++ G  S++               
Sbjct: 132 --LCGFGSDNFTFPPVIRACTAASCLQLGRQVHCRVLRTGHGSNVGVQTALLDMYAKAGQ 189

Query: 107 -------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                  F+ +    L+S NA+V+G+  N  F++AV      +  G+ PNA T++ ++  
Sbjct: 190 IDVSRRVFDCMVLRDLISWNAMVSGYSVNGCFREAVETLQEMQQCGMSPNASTLVGIVGM 249

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C + G R   + +H   +K G I D S+ ++++ MY+   DL ++  +F     KD++S+
Sbjct: 250 CGSAGDRVAGDSLHAFALKGGTIDDESLTSALISMYAAFDDLSSSRLVFDLQPVKDLVSF 309

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLI-SVNAILGDLKRGKQLHAQVV 278
             M+  ++      +A ++FR M  + +  + + L++++ S + +L  +  G+ +H  ++
Sbjct: 310 NSMISAYMQHSNWKEAFEVFRLMHCAGVGPNLITLVSVLPSCSDLLFGINHGESVHGMII 369

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
             GL  ++ + +++++MYSK G LDSS  +F   TEK+ + W ++ISGY+ N     AL+
Sbjct: 370 KLGLAEQVSVVSALVSMYSKLGKLDSSSLLFCCFTEKNNILWNSMISGYLVNNEWNMALD 429

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
            F KM Q    + D+ T++++++       L +   +H  A    F  Y+SV N L++ Y
Sbjct: 430 AFCKM-QIAGVAPDATTVINVISGCRYTKDLHVAKSIHAYAVRNRFESYQSVMNALLAMY 488

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM 446
           + CG++  +Y +F++M  +R ++SWNT+I G+   G  ET+L L+ +M
Sbjct: 489 ADCGDISTSYTLFQKME-VRMLISWNTMISGFAEIGDSETSLTLFCQM 535



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 118/496 (23%), Positives = 236/496 (47%), Gaps = 42/496 (8%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D   +S L+S Y     +  +  +FD  P K++VS++ +I  Y  +   +++ + F  M 
Sbjct: 274 DESLTSALISMYAAFDDLSSSRLVFDLQPVKDLVSFNSMISAYMQHSNWKEAFEVFRLMH 333

Query: 64  LSGLLPNSFTMVGVLVAAAGLQ-NLELARSIHGLMVKFGLESDL------------FEGL 110
            +G+ PN  T+V VL + + L   +    S+HG+++K GL   +               L
Sbjct: 334 CAGVGPNLITLVSVLPSCSDLLFGINHGESVHGMIIKLGLAEQVSVVSALVSMYSKLGKL 393

Query: 111 KNPYLVSC----------NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
            +  L+ C          N++++G++ N  +  A+  F   + +G+ P+A T++ VI GC
Sbjct: 394 DSSSLLFCCFTEKNNILWNSMISGYLVNNEWNMALDAFCKMQIAGVAPDATTVINVISGC 453

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
                  + + IH   ++       SV N++L MY+   D+  +  +F++ME + +ISW 
Sbjct: 454 RYTKDLHVAKSIHAYAVRNRFESYQSVMNALLAMYADCGDISTSYTLFQKMEVRMLISWN 513

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+  F +   +  +L +F +M    +  D V L+ LIS  ++  D   G+ +H+  +  
Sbjct: 514 TMISGFAEIGDSETSLTLFCQMFHEEVWFDLVTLIGLISSLSVSEDAIVGESVHSLAIKS 573

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           G  S++ L+N++I MY+ CG +++ + +FN    ++ +++ A++SGY +N  + + L  F
Sbjct: 574 GCISDVSLTNALITMYANCGIVEAGQQLFNSFCSRNTITYNALMSGYRKNNVSEKILPLF 633

Query: 341 IKM--RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPR-YRSVQNCLISS 397
            +M    EK + V  + L+ +  +           QL G    +   R +  ++  L +S
Sbjct: 634 TQMVKNDEKPNLVTLLNLLPVCQS-----------QLQGKCIHSYAVRNFTRLETPLFTS 682

Query: 398 ----YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
               YS+  N++    +F  +   R+++ WN  +         +  +  +  M      P
Sbjct: 683 AMGMYSRFNNIEYCRTIFSLVS-ARNLIVWNAFLSACVQCKQADMVVDYFKHMLFLNVRP 741

Query: 454 DSSTYLSILNACGHAG 469
           D  T L++++AC   G
Sbjct: 742 DEVTMLALISACSQLG 757


>gi|147860004|emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera]
          Length = 1321

 Score =  231 bits (590), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 159/568 (27%), Positives = 262/568 (46%), Gaps = 60/568 (10%)

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--------------- 105
           H+   G  P+   +   L        +EL R  H  +VK GL SD               
Sbjct: 103 HVEFGGGFPHRQYVFSALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCG 162

Query: 106 -------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                  +++ + +    +CN +++ +  N  F QA  +F      G  PN  T  T++ 
Sbjct: 163 EVDSAVRVYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLA 222

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYS-CLMDLDAAIQIFREMECKDVI 217
            C  + +    + +H   +K+  + + +V N++L +YS C M  +A I +F  +  +++I
Sbjct: 223 VCGTISAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEI-VFESLRQRNII 281

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           SWT  +  F        ALK F  MR+S I  +      +++    + D   G+  H QV
Sbjct: 282 SWTASINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGCVKDFIDGRMFHTQV 341

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQI-TEKSLVSWTAIISGYVQNGCAREA 336
           +  G+ S + +  +II MYS  G++D +   F Q+    S VSW A+I+GYV N    +A
Sbjct: 342 IKKGMASGVFVGTAIIDMYSGLGEMDEAEKQFKQMGRAASNVSWNALIAGYVLNEKIEKA 401

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
           +  F +M +E   + +  T  +I  A     +L   +Q+H    ++       V + LI 
Sbjct: 402 MEAFCRMVKEDV-ACNEFTYSNIFKACSSFPSLATTVQIHSRLIKSNVESNLHVASSLIE 460

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
           +Y++CG+++ A  VF ++    DVVSWN+II  Y  NG    A+ L  KM E G  P S 
Sbjct: 461 AYTQCGSLENAVQVFTQISDA-DVVSWNSIIKAYSQNGDPWKAIFLLRKMIEEGNKPTSX 519

Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK 516
           T+L++L+AC H+GL  +G   F  M+++  ++P + H  C+VD+L RAG L +A     K
Sbjct: 520 TFLTVLSACSHSGLVQEGQEFFKSMVQDYSIQPEETHCSCMVDILGRAGQLENALDFIKK 579

Query: 517 LLEGMGPNIWRALLSGC---------------------------------VLHVGRFQDA 543
           L      +IWR LL+ C                                    VGR+ DA
Sbjct: 580 LTMKPTASIWRPLLAACRYNSNLQMAEYVAEKILDLEPNDATVYVTLSNMYAEVGRWADA 639

Query: 544 EALRSGSQKKGIIKIPGISFLNSTSRDF 571
           E  R   ++K I K PG S++   ++ +
Sbjct: 640 ENQRRLMEQKEISKEPGCSWIEVNNKMY 667



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 122/443 (27%), Positives = 218/443 (49%), Gaps = 42/443 (9%)

Query: 106  LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
            LF+ + N  +     +         +++A+  F+  +  GL PN   + ++++ C  L  
Sbjct: 860  LFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGHLSD 919

Query: 166  RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
            R   E +H + +K     D  + ++++ MYS    ++ A ++F  +  KD++    M+  
Sbjct: 920  RRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVSG 979

Query: 226  FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
            +    +  +AL + ++M+++ +  + V+                                
Sbjct: 980  YAQHGFVHEALBLVQKMQQAGVKPNVVSW------------------------------- 1008

Query: 286  LRLSNSIIAMYSKCGDLDSSRSVFNQIT----EKSLVSWTAIISGYVQNGCAREALNQFI 341
                N++IA +S+ GD      VF  +T    E  +VSWT++ISG+VQN    E  + F 
Sbjct: 1009 ----NTLIAGFSQVGDKSMVSEVFRLMTANGVEPDVVSWTSVISGFVQNFHNHEGFDAFK 1064

Query: 342  KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
            +M  ++     S+T+ S+L A   +A L    ++HG A   G  +   V++ L+  Y+KC
Sbjct: 1065 EML-DQGFCPSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKC 1123

Query: 402  GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
            G +  A I+F  M   R+ V+WN++I+GY  +G+   A+ L+++M E+    D  T+ ++
Sbjct: 1124 GYISEAKILFYMMP-ERNTVTWNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFTAV 1182

Query: 462  LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
            LNAC HAG+   G  +F +M E+ +++P  EHY C+VDLL RAG LS+A  L   +    
Sbjct: 1183 LNACSHAGMVELGESLFXKMQEKYRIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMPVEP 1242

Query: 522  GPNIWRALLSGCVLHVGRFQDAE 544
               +W ALL  C  H G  + AE
Sbjct: 1243 DKFVWGALLGACRNH-GNIELAE 1264



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 117/487 (24%), Positives = 220/487 (45%), Gaps = 64/487 (13%)

Query: 6    YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
            Y ++KL+S Y + G++  A  LFD+IP  N+  W ++    +  GF+E+++ AFS M   
Sbjct: 839  YFAAKLMSFYTECGQLSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKE 898

Query: 66   GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-------------------- 105
            GL PN F +  +L A   L +     ++H +++K   ESD                    
Sbjct: 899  GLRPNQFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKA 958

Query: 106  --LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
              +F+ + +  LV  NA+V+G+  +    +A+ L    + +G+ PN V+  T+I G   +
Sbjct: 959  CRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALBLVQKMQQAGVKPNVVSWNTLIAGFSQV 1018

Query: 164  GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
            G +++   +  L    G+                                 DV+SWT ++
Sbjct: 1019 GDKSMVSEVFRLMTANGVE-------------------------------PDVVSWTSVI 1047

Query: 224  GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
              FV   +  +    F+EM        +V + +L+     + +L+ GK++H   ++ G++
Sbjct: 1048 SGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVE 1107

Query: 284  SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
             ++ + ++++ MY+KCG +  ++ +F  + E++ V+W ++I GY  +G   EA+  F +M
Sbjct: 1108 KDVYVRSALVDMYAKCGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQM 1167

Query: 344  RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN-----CLISSY 398
             +  T  +D +T  ++L A      +E+   L    F     +YR         C++   
Sbjct: 1168 EESDT-KLDHLTFTAVLNACSHAGMVELGESL----FXKMQEKYRIEPRLEHYACMVDLL 1222

Query: 399  SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETA-LALYHKMTETGEVPDSST 457
             + G +  AY + + M    D   W  ++     +G+ E A +A  H      E P SS 
Sbjct: 1223 GRAGKLSEAYDLIKAMPVEPDKFVWGALLGACRNHGNIELAEVAAEHLFELEPESPGSSL 1282

Query: 458  YLSILNA 464
             LS L A
Sbjct: 1283 LLSNLYA 1289



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 117/502 (23%), Positives = 227/502 (45%), Gaps = 40/502 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L+  Y K G++  A  ++D++   +  + + +I  Y+ NGF  ++ + F  + 
Sbjct: 147 DEFVCTSLIDMYAKCGEVDSAVRVYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIG 206

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
             G  PN +T   +L     +  ++  + +H  +VK    S+                  
Sbjct: 207 NMGTRPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMME 266

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +FE L+   ++S  A + GF  +  F++A+  F+  R SG+ PN  T   V+  C 
Sbjct: 267 EAEIVFESLRQRNIISWTASINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCG 326

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM-ECKDVISWT 220
            +       + H   IK G+   V V  +++DMYS L ++D A + F++M      +SW 
Sbjct: 327 CVKDFIDGRMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEAEKQFKQMGRAASNVSWN 386

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++  +V  E    A++ F  M K  + C+     N+    +    L    Q+H++++  
Sbjct: 387 ALIAGYVLNEKIEKAMEAFCRMVKEDVACNEFTYSNIFKACSSFPSLATTVQIHSRLIKS 446

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
            ++S L +++S+I  Y++CG L+++  VF QI++  +VSW +II  Y QNG   +A+   
Sbjct: 447 NVESNLHVASSLIEAYTQCGSLENAVQVFTQISDADVVSWNSIIKAYSQNGDPWKAIFLL 506

Query: 341 IKMRQE--KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ------N 392
            KM +E  K  S   +T++S  + SG        L   G  F     +  S+Q      +
Sbjct: 507 RKMIEEGNKPTSXTFLTVLSACSHSG--------LVQEGQEFFKSMVQDYSIQPEETHCS 558

Query: 393 CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV 452
           C++    + G ++ A    +++        W  ++     N + + A  +  K+ +  E 
Sbjct: 559 CMVDILGRAGQLENALDFIKKLTMKPTASIWRPLLAACRYNSNLQMAEYVAEKILDL-EP 617

Query: 453 PDSSTYLSILNACGHAGLTNDG 474
            D++ Y+++ N     G   D 
Sbjct: 618 NDATVYVTLSNMYAEVGRWADA 639



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/270 (22%), Positives = 135/270 (50%), Gaps = 9/270 (3%)

Query: 4    DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
            D Y  S L+  Y K G +++A  +FD I +K++V  + ++ GY+ +GF  +++     M 
Sbjct: 938  DAYIISALIYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALBLVQKMQ 997

Query: 64   LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVA 123
             +G+ PN  +   ++   + + +  +   +  LM   G+E D+         VS  ++++
Sbjct: 998  QAGVKPNVVSWNTLIAGFSQVGDKSMVSEVFRLMTANGVEPDV---------VSWTSVIS 1048

Query: 124  GFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLIL 183
            GF+ N    +    F      G  P++VT+ +++  C  + +    + IHG  + +G+  
Sbjct: 1049 GFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEK 1108

Query: 184  DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMR 243
            DV V ++++DMY+    +  A  +F  M  ++ ++W  ++  + +  Y  +A+++F +M 
Sbjct: 1109 DVYVRSALVDMYAKCGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQME 1168

Query: 244  KSRIICDTVALLNLISVNAILGDLKRGKQL 273
            +S    D +    +++  +  G ++ G+ L
Sbjct: 1169 ESDTKLDHLTFTAVLNACSHAGMVELGESL 1198



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 126/260 (48%), Gaps = 8/260 (3%)

Query: 233  GDALKIFREMRKSRII---CDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLS 289
             +  +++R +   R      DT A    I + A    L RG+ LHA +V+ GL      +
Sbjct: 784  ANVYRVYRNISTHRTFQSSSDTYA--KAIDMYARDRALYRGRALHAHLVIIGLARLTYFA 841

Query: 290  NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD 349
              +++ Y++CG L ++R +F++I   ++  W  +     + G   EAL+ F +M++E   
Sbjct: 842  AKLMSFYTECGQLSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLR 901

Query: 350  SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYI 409
              +   L SIL A G L+       +H +  +  F     + + LI  YSKCG+V+ A  
Sbjct: 902  P-NQFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACR 960

Query: 410  VFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAG 469
            VF+ +   +D+V  N ++ GY  +G    AL L  KM + G  P+  ++ +++      G
Sbjct: 961  VFDWI-VDKDLVVMNAMVSGYAQHGFVHEALBLVQKMQQAGVKPNVVSWNTLIAGFSQVG 1019

Query: 470  LTNDGLVIFNQMIEENKVKP 489
              +    +F +++  N V+P
Sbjct: 1020 DKSMVSEVF-RLMTANGVEP 1038



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 56/104 (53%), Gaps = 1/104 (0%)

Query: 4    DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
            D Y  S L+  Y K G I EA+ LF  +PE+N V+W+ +I GY+ +G+  ++++ F+ M 
Sbjct: 1109 DVYVRSALVDMYAKCGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQME 1168

Query: 64   LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMV-KFGLESDL 106
             S    +  T   VL A +    +EL  S+   M  K+ +E  L
Sbjct: 1169 ESDTKLDHLTFTAVLNACSHAGMVELGESLFXKMQEKYRIEPRL 1212


>gi|147834193|emb|CAN75306.1| hypothetical protein VITISV_040403 [Vitis vinifera]
          Length = 826

 Score =  231 bits (590), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 152/531 (28%), Positives = 273/531 (51%), Gaps = 23/531 (4%)

Query: 35  NVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIH 94
           NV+SW+  I         E ++  F  M+++   PN  T++ V+ A +GL   ++ R I 
Sbjct: 53  NVISWTSKISSLVKQNQSELAVGLFKMMLMTEQRPNHVTVLSVIRAISGLGLEDMMRVIC 112

Query: 95  GLMVKFGLESDL-----FEGLKNPY----------------LVSCNAIVAGFINNKLFQQ 133
           G ++K G ES++       G  + Y                LV  +A+V+  + +  + +
Sbjct: 113 GSVIKLGFESEVSVATALIGFYSDYDMGIVWKIFNQTPIKDLVLWSAMVSACVKSGQYGE 172

Query: 134 AVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLD 193
           A  +F   +  G+ PN V++++++  C  +G+    + IHG +IK       +V+NS++D
Sbjct: 173 AFEIFRAMQYDGVEPNHVSIVSILPACANVGALLFGKEIHGFSIKKMFHPLTNVHNSLVD 232

Query: 194 MYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVA 253
           MY+   +  A++ +F ++  KD+ISWT ++   ++ +   +A K F  M+ S    D   
Sbjct: 233 MYAKCRNFKASMLVFDQILEKDLISWTTIIRGCIENDCPREAFKAFSRMQFSCFGADETI 292

Query: 254 LLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT 313
           + +LI       + K G   H  ++  GL + + +  +++ MY+K G+L+S+  VF+Q+ 
Sbjct: 293 VQDLIVAIIQADEHKFGIAFHGFLLKNGLLAFVSIGTALLQMYAKFGELESAIIVFDQLN 352

Query: 314 EKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICL 373
           +K  +SW+A+IS +  +     AL  F +M Q   +  + IT VS+L A   + A E+  
Sbjct: 353 KKDYISWSAMISVHAHSRHPYNALETFKQM-QSTDERPNEITFVSLLQACSLIGAQELGE 411

Query: 374 QLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVN 433
            +   A +AG+     + + LI  Y K G ++    +F E+   +D+V W+++I GYG+N
Sbjct: 412 SIQAHATKAGYLSNAFLSSALIDLYCKFGRINQGRAIFNEIP-TKDLVCWSSMINGYGLN 470

Query: 434 GHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEH 493
           G G+ AL  +  M   G  P+   ++S+L+AC H GL ++G   F+ M ++  + P   H
Sbjct: 471 GCGDEALETFSNMLACGVKPNEVVFISVLSACSHCGLEHEGWSCFSSMEQKYGIIPKLPH 530

Query: 494 YGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAE 544
           Y C+VDL++R G +  A     K+       IW ALL+GC    G  + AE
Sbjct: 531 YACMVDLISRRGNIEGALQFVNKMPMEPDKRIWGALLAGCRSTHGSIEIAE 581



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 116/466 (24%), Positives = 214/466 (45%), Gaps = 35/466 (7%)

Query: 26  NLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQ 85
            +F++ P K++V WS ++     +G + ++ + F  M   G+ PN  ++V +L A A + 
Sbjct: 144 KIFNQTPIKDLVLWSAMVSACVKSGQYGEAFEIFRAMQYDGVEPNHVSIVSILPACANVG 203

Query: 86  NLELARSIHGLMVK----------------------FGLESDLFEGLKNPYLVSCNAIVA 123
            L   + IHG  +K                      F     +F+ +    L+S   I+ 
Sbjct: 204 ALLFGKEIHGFSIKKMFHPLTNVHNSLVDMYAKCRNFKASMLVFDQILEKDLISWTTIIR 263

Query: 124 GFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLIL 183
           G I N   ++A   F+  + S    +   +  +I   +           HG  +K GL+ 
Sbjct: 264 GCIENDCPREAFKAFSRMQFSCFGADETIVQDLIVAIIQADEHKFGIAFHGFLLKNGLLA 323

Query: 184 DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMR 243
            VS+  ++L MY+   +L++AI +F ++  KD ISW+ M+ +     +  +AL+ F++M+
Sbjct: 324 FVSIGTALLQMYAKFGELESAIIVFDQLNKKDYISWSAMISVHAHSRHPYNALETFKQMQ 383

Query: 244 KSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLD 303
            +    + +  ++L+   +++G  + G+ + A     G  S   LS+++I +Y K G ++
Sbjct: 384 STDERPNEITFVSLLQACSLIGAQELGESIQAHATKAGYLSNAFLSSALIDLYCKFGRIN 443

Query: 304 SSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ--EKTDSVDSITLVSILT 361
             R++FN+I  K LV W+++I+GY  NGC  EAL  F  M     K + V  I+++S  +
Sbjct: 444 QGRAIFNEIPTKDLVCWSSMINGYGLNGCGDEALETFSNMLACGVKPNEVVFISVLSACS 503

Query: 362 ASGELAALEICL----QLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFL 417
             G       C     Q +GI      P Y     C++   S+ GN++ A     +M   
Sbjct: 504 HCGLEHEGWSCFSSMEQKYGII--PKLPHY----ACMVDLISRRGNIEGALQFVNKMPME 557

Query: 418 RDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
            D   W  ++ G   + HG   +A        G  P +++Y  IL+
Sbjct: 558 PDKRIWGALLAG-CRSTHGSIEIAELVAERLIGLDPQNTSYYVILS 602



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 120/235 (51%), Gaps = 3/235 (1%)

Query: 212 ECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGK 271
           E  +VISWT  +   V    +  A+ +F+ M  +    + V +L++I   + LG     +
Sbjct: 50  EKDNVISWTSKISSLVKQNQSELAVGLFKMMLMTEQRPNHVTVLSVIRAISGLGLEDMMR 109

Query: 272 QLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNG 331
            +   V+  G +SE+ ++ ++I  YS   D+     +FNQ   K LV W+A++S  V++G
Sbjct: 110 VICGSVIKLGFESEVSVATALIGFYSDY-DMGIVWKIFNQTPIKDLVLWSAMVSACVKSG 168

Query: 332 CAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ 391
              EA   F  M+ +  +  + +++VSIL A   + AL    ++HG + +  F    +V 
Sbjct: 169 QYGEAFEIFRAMQYDGVEP-NHVSIVSILPACANVGALLFGKEIHGFSIKKMFHPLTNVH 227

Query: 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM 446
           N L+  Y+KC N   + +VF+++   +D++SW TII G   N     A   + +M
Sbjct: 228 NSLVDMYAKCRNFKASMLVFDQI-LEKDLISWTTIIRGCIENDCPREAFKAFSRM 281



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/350 (21%), Positives = 160/350 (45%), Gaps = 26/350 (7%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  + +NS  L+  Y K    K +  +FD+I EK+++SW+ +I G   N    ++ KAFS
Sbjct: 222 PLTNVHNS--LVDMYAKCRNFKASMLVFDQILEKDLISWTTIIRGCIENDCPREAFKAFS 279

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG------------------- 101
            M  S    +   +  ++VA       +   + HG ++K G                   
Sbjct: 280 RMQFSCFGADETIVQDLIVAIIQADEHKFGIAFHGFLLKNGLLAFVSIGTALLQMYAKFG 339

Query: 102 -LESDL--FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
            LES +  F+ L     +S +A+++   +++    A+  F   + +   PN +T +++++
Sbjct: 340 ELESAIIVFDQLNKKDYISWSAMISVHAHSRHPYNALETFKQMQSTDERPNEITFVSLLQ 399

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C  +G++ L E I     K G + +  ++++++D+Y     ++    IF E+  KD++ 
Sbjct: 400 ACSLIGAQELGESIQAHATKAGYLSNAFLSSALIDLYCKFGRINQGRAIFNEIPTKDLVC 459

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           W+ M+  +       +AL+ F  M    +  + V  ++++S  +  G    G    + + 
Sbjct: 460 WSSMINGYGLNGCGDEALETFSNMLACGVKPNEVVFISVLSACSHCGLEHEGWSCFSSME 519

Query: 279 LG-GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISG 326
              G+  +L     ++ + S+ G+++ +    N++  E     W A+++G
Sbjct: 520 QKYGIIPKLPHYACMVDLISRRGNIEGALQFVNKMPMEPDKRIWGALLAG 569


>gi|359359183|gb|AEV41088.1| putative pentatricopeptide [Oryza minuta]
          Length = 760

 Score =  231 bits (590), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 166/563 (29%), Positives = 274/563 (48%), Gaps = 32/563 (5%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFH-EKSMKAF 59
           P    + +++LLS Y +   I +A  L    P  +VVS++ V+   S    H  +  + F
Sbjct: 91  PTPTTFLANQLLSLYARLSAIPDALALLRSTPHPSVVSYNTVLSALSRAPRHAPEGFRLF 150

Query: 60  SHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG-LESDL------------ 106
             +  SGL P + ++  +L AA  L++     + H   V  G L SD+            
Sbjct: 151 RRLHASGLRPTAPSLCALLRAAGELRDRRAGAAAHSQAVTLGFLASDIVPTALLQMYSQC 210

Query: 107 ---------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
                    F+ +     V+ N ++   +      +A+  F      GL P   T+ +V+
Sbjct: 211 GAPRDANQVFDEMATRDGVAWNCVMHCNVRYGYLDRALGQFCRMVRGGLPPTESTLSSVL 270

Query: 158 RGCVALGSRALCELIHGLTIKLG-LILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
            GC   G       +HG  +KL  L  D+ + N++LDMYS   DL+ A+++F  +E  D+
Sbjct: 271 SGCGRAGDCRRGRALHGWVVKLEELDPDMPLQNALLDMYSSCGDLETALRVFERIETPDL 330

Query: 217 ISWTRMMGLFVDFEYAGDALKIFREMRKSR----IICDTVALLNLISVNAILGDLKRGKQ 272
           +SW  ++  F        A+  F +++  +    ++ D   L  ++S  A L  +  GK 
Sbjct: 331 VSWNTLIAGFSGVGDGCSAMDAFVQLKAVQFDEWVVPDEYTLAAVVSACATLPAMFGGKP 390

Query: 273 LHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC 332
           LHA+V+  GL+S + + N+++ MY    +  S+R +F+ + +K ++ WT +++G+   G 
Sbjct: 391 LHAEVIKAGLESSVFVGNTLLNMYFTNEEPGSARILFHSLNQKDVIMWTEMVAGHSLLGE 450

Query: 333 AREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN 392
              AL  F+ M QE    VDS +L S L ++ ELA L+    LH    ++G+        
Sbjct: 451 GEMALKYFVSMLQEGY-KVDSFSLSSALNSTAELAGLKQGEMLHAEVVKSGYEGNICASG 509

Query: 393 CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV 452
            L+  Y+K G +  AY+VF  +    D+  WN+II GYG +G+ E A  L+ +M   G  
Sbjct: 510 SLVDMYAKNGALPGAYLVFSNIQ-KPDLKCWNSIIGGYGNHGNSEMAFKLFGEMIRDGLQ 568

Query: 453 PDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASG 512
           PD  TY+S+L+AC H GL   G   +  M+ +  V P  +HY  +V LL+RAG L +A  
Sbjct: 569 PDHVTYISLLSACSHCGLVEKGKFYWFCMMTDGIV-PGFKHYTSMVSLLSRAGLLEEAVD 627

Query: 513 LAGKL-LEGMGPNIWRALLSGCV 534
           L  K       P +WR LLS C+
Sbjct: 628 LMMKCPFTKKCPELWRILLSSCI 650


>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
 gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  231 bits (590), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 146/424 (34%), Positives = 222/424 (52%), Gaps = 35/424 (8%)

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           IH L +KLG   DV V  S++ MYS    +  A ++F +M  +D  SW  M+  +     
Sbjct: 16  IHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARDRGSWNAMISGYCQNGN 75

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
           A +AL I  EMR   +  D + + +++ V A +GD+  GK +H  V+  GL+ EL +SN+
Sbjct: 76  AAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLIHLYVIKHGLEFELFVSNA 135

Query: 292 IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
           +I MY+K G L  ++ VF  +  K +VSW  +I+GY QNG A EA+  ++ M + +    
Sbjct: 136 LINMYAKFGSLGHAQKVFGLLI-KDVVSWNTLITGYAQNGLASEAIEVYLLMEEHEEIIP 194

Query: 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVF 411
           +  T VSIL A   + AL+  +++HG   +        V  CLI  Y KCG +D A  +F
Sbjct: 195 NQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGTCLIDMYGKCGKLDDAISLF 254

Query: 412 EEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLT 471
            ++   ++ V WN +I  YGV+G GE AL L+ +M      PD  T++S+L+AC H+GL 
Sbjct: 255 YQVP-RKNSVPWNAMISCYGVHGDGEKALELFREMKAERVKPDHITFVSLLSACSHSGLV 313

Query: 472 NDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLS 531
           +D    FN M EE  +KPS +HYGC+VDL  RAG L  A     K+      + W ALL+
Sbjct: 314 SDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFNFIKKMPIQPDASAWGALLN 373

Query: 532 GCVLH---------------------------------VGRFQDAEALRSGSQKKGIIKI 558
            C +H                                 VG+++  + +RS ++ +G+ K 
Sbjct: 374 ACRIHGNIELGKHASERLFEVDSENVGYYVLLSNIYANVGKWEGVDDVRSLARDRGLRKN 433

Query: 559 PGIS 562
           PG S
Sbjct: 434 PGWS 437



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/356 (27%), Positives = 189/356 (53%), Gaps = 11/356 (3%)

Query: 89  LARSIHGLMVKFGLESD---LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSG 145
           +A S+  +  +FGL  D   LF+ +      S NA+++G+  N    +A+ + +  R  G
Sbjct: 31  VAASLVHMYSRFGLVGDARKLFDDMPARDRGSWNAMISGYCQNGNAAEALDIADEMRLEG 90

Query: 146 LVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAI 205
           +  +A+T+ +V+  C  +G     +LIH   IK GL  ++ V+N++++MY+    L  A 
Sbjct: 91  VKMDAITVASVLPVCAQVGDILSGKLIHLYVIKHGLEFELFVSNALINMYAKFGSLGHAQ 150

Query: 206 QIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRK-SRIICDTVALLNLISVNAIL 264
           ++F  +  KDV+SW  ++  +     A +A++++  M +   II +    ++++   + +
Sbjct: 151 KVFGLL-IKDVVSWNTLITGYAQNGLASEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHV 209

Query: 265 GDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAII 324
           G L++G ++H QV+   L S++ +   +I MY KCG LD + S+F Q+  K+ V W A+I
Sbjct: 210 GALQQGMRIHGQVIKNCLYSDVFVGTCLIDMYGKCGKLDDAISLFYQVPRKNSVPWNAMI 269

Query: 325 SGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTA---SGELAALEICLQLHGIAFE 381
           S Y  +G   +AL  F +M+ E+    D IT VS+L+A   SG ++  + C  +  +  E
Sbjct: 270 SCYGVHGDGEKALELFREMKAERVKP-DHITFVSLLSACSHSGLVSDAQWCFNM--MEEE 326

Query: 382 AGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGE 437
            G         C++  + + G +++A+   ++M    D  +W  ++    ++G+ E
Sbjct: 327 YGIKPSLKHYGCMVDLFGRAGELEMAFNFIKKMPIQPDASAWGALLNACRIHGNIE 382



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 86/250 (34%), Positives = 137/250 (54%), Gaps = 5/250 (2%)

Query: 265 GDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAII 324
           GDL  GK++H  V+  G + ++ ++ S++ MYS+ G +  +R +F+ +  +   SW A+I
Sbjct: 8   GDLLDGKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARDRGSWNAMI 67

Query: 325 SGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGF 384
           SGY QNG A EAL+   +MR E    +D+IT+ S+L    ++  +     +H    + G 
Sbjct: 68  SGYCQNGNAAEALDIADEMRLEGV-KMDAITVASVLPVCAQVGDILSGKLIHLYVIKHGL 126

Query: 385 PRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH 444
                V N LI+ Y+K G++  A  VF  +  ++DVVSWNT+I GY  NG    A+ +Y 
Sbjct: 127 EFELFVSNALINMYAKFGSLGHAQKVFGLL--IKDVVSWNTLITGYAQNGLASEAIEVYL 184

Query: 445 KMTETGE-VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLAR 503
            M E  E +P+  T++SIL A  H G    G+ I  Q+I +N +        C++D+  +
Sbjct: 185 LMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVI-KNCLYSDVFVGTCLIDMYGK 243

Query: 504 AGCLSDASGL 513
            G L DA  L
Sbjct: 244 CGKLDDAISL 253



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 89/376 (23%), Positives = 175/376 (46%), Gaps = 33/376 (8%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + ++ L+  Y + G + +A  LFD++P ++  SW+ +I GY  NG   +++     M 
Sbjct: 28  DVFVAASLVHMYSRFGLVGDARKLFDDMPARDRGSWNAMISGYCQNGNAAEALDIADEMR 87

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY------- 114
           L G+  ++ T+  VL   A + ++   + IH  ++K GLE +LF    L N Y       
Sbjct: 88  LEGVKMDAITVASVLPVCAQVGDILSGKLIHLYVIKHGLEFELFVSNALINMYAKFGSLG 147

Query: 115 ------------LVSCNAIVAGFINNKLFQQAVLLFNFF-RGSGLVPNAVTMLTVIRGCV 161
                       +VS N ++ G+  N L  +A+ ++        ++PN  T ++++    
Sbjct: 148 HAQKVFGLLIKDVVSWNTLITGYAQNGLASEAIEVYLLMEEHEEIIPNQGTWVSILPAYS 207

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            +G+      IHG  IK  L  DV V   ++DMY     LD AI +F ++  K+ + W  
Sbjct: 208 HVGALQQGMRIHGQVIKNCLYSDVFVGTCLIDMYGKCGKLDDAISLFYQVPRKNSVPWNA 267

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISV---NAILGDLKRGKQLHAQVV 278
           M+  +        AL++FREM+  R+  D +  ++L+S    + ++ D +    +  +  
Sbjct: 268 MISCYGVHGDGEKALELFREMKAERVKPDHITFVSLLSACSHSGLVSDAQWCFNMMEEEY 327

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISGYVQNGCAREAL 337
             G++  L+    ++ ++ + G+L+ + +   ++  +    +W A++     N C     
Sbjct: 328 --GIKPSLKHYGCMVDLFGRAGELEMAFNFIKKMPIQPDASAWGALL-----NACRIHGN 380

Query: 338 NQFIKMRQEKTDSVDS 353
            +  K   E+   VDS
Sbjct: 381 IELGKHASERLFEVDS 396


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  231 bits (590), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 127/437 (29%), Positives = 242/437 (55%), Gaps = 2/437 (0%)

Query: 101 GLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFN-FFRGSGLVPNAVTMLTVIRG 159
           G    +F   +   +++ N+++  F+N+ + ++A+  +      S  VP+  T  ++++G
Sbjct: 29  GYAYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKG 88

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C  L    + +++HG  +K  L  D+ +  ++L+MY+   DL +A  +F  M  ++ + W
Sbjct: 89  CALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVW 148

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           T M+  ++      +AL ++++M +     D V +  L+S  A L DL  G +LH+ +  
Sbjct: 149 TSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIRE 208

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
             ++    L ++++ MY+KCGDL ++R VF+++++K + +W+A+I GYV+N  + EAL  
Sbjct: 209 MDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQL 268

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           F ++        + +T++++++A  +L  LE    +H            S+ N LI  +S
Sbjct: 269 FREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFS 328

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           KCG++D A  +F+ M + +D++SWN+++ G+ ++G G  ALA +  M  T   PD  T++
Sbjct: 329 KCGDIDAAKRIFDSMSY-KDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEITFI 387

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519
            +L AC HAGL  +G  +F ++     V+   EHYGC+VDLL RAG L++A      +  
Sbjct: 388 GVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPL 447

Query: 520 GMGPNIWRALLSGCVLH 536
                IW ++L  C ++
Sbjct: 448 QPDGAIWGSMLGACRVY 464



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 98/363 (26%), Positives = 196/363 (53%), Gaps = 25/363 (6%)

Query: 24  AENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM-LSGLLPNSFTMVGVLVAAA 82
           A ++F    E +V++W+ ++  +  +    +++++++ M+  S  +P+ FT   +L   A
Sbjct: 31  AYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCA 90

Query: 83  GLQNLELARSIHGLMVKFGLESD----------------------LFEGLKNPYLVSCNA 120
            L   ++ + +HG +VK+ L SD                      LFE + +   V   +
Sbjct: 91  LLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTS 150

Query: 121 IVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLG 180
           +++G++ N    +A+LL+      G  P+ VTM T++  C  L    +   +H    ++ 
Sbjct: 151 MISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMD 210

Query: 181 LILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFR 240
           + +   + +++++MY+   DL  A Q+F ++  KDV +W+ ++  +V    + +AL++FR
Sbjct: 211 MKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFR 270

Query: 241 EMR-KSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKC 299
           E+   S +  + V +L +IS  A LGDL+ G+ +H  +        + L+NS+I M+SKC
Sbjct: 271 EVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKC 330

Query: 300 GDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSI 359
           GD+D+++ +F+ ++ K L+SW ++++G+  +G  REAL QF ++ Q      D IT + +
Sbjct: 331 GDIDAAKRIFDSMSYKDLISWNSMVNGFALHGLGREALAQF-RLMQTTDLQPDEITFIGV 389

Query: 360 LTA 362
           LTA
Sbjct: 390 LTA 392



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 142/297 (47%), Gaps = 23/297 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + LL+ Y   G +K A  LF+ +  +N V W+ +I GY  N    +++  +  M 
Sbjct: 113 DLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKME 172

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE-------------------- 103
             G  P+  TM  ++ A A L++L +   +H  + +  ++                    
Sbjct: 173 EDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLK 232

Query: 104 --SDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFR-GSGLVPNAVTMLTVIRGC 160
               +F+ L +  + + +A++ G++ N    +A+ LF     GS + PN VT+L VI  C
Sbjct: 233 TARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISAC 292

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             LG       +H    +      VS+NNS++DM+S   D+DAA +IF  M  KD+ISW 
Sbjct: 293 AQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWN 352

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
            M+  F       +AL  FR M+ + +  D +  + +++  +  G ++ GK+L  ++
Sbjct: 353 SMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEI 409


>gi|449464496|ref|XP_004149965.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
 gi|449497665|ref|XP_004160467.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 938

 Score =  231 bits (590), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 152/544 (27%), Positives = 268/544 (49%), Gaps = 30/544 (5%)

Query: 19  GKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVL 78
           G I EA ++F+E+ E++ +SW+ +I   + N  HE+S + F  M L     N  T+  +L
Sbjct: 209 GDINEACSIFNEMNERDTISWNSIISANAQNTLHEESFRYFHWMRLVHEEINYTTLSILL 268

Query: 79  VAAAGLQNLELARSIHGLMVKFGLESDL----------------------FEGLKNPYLV 116
                +  L+  + +HGL VK+GLES++                      F  +    L+
Sbjct: 269 SICGSVDYLKWGKGVHGLAVKYGLESNICLCNTLLSVYSDAGRSKDAELIFRRMPERDLI 328

Query: 117 SCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLT 176
           S N+++A ++ +     A+ +F          N VT  + +  C+        +++HG  
Sbjct: 329 SWNSMLACYVQDGRCLCALKVFAEMLWMKKEINYVTFTSALAACLDPEFFTNGKILHGFV 388

Query: 177 IKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDAL 236
           + LGL  ++ + N+++  Y     +  A ++F+ M   D ++W  ++G F +     +A+
Sbjct: 389 VVLGLQDELIIGNTLITFYGKCHKMAEAKKVFQRMPKLDKVTWNALIGGFANNAELNEAV 448

Query: 237 KIFREMRK-SRIICDTVALLNLISVNAILGDL-KRGKQLHAQVVLGGLQSELRLSNSIIA 294
             F+ MR+ S    D + ++N++       DL K G  +HA  V+ G   +  + +S+I 
Sbjct: 449 AAFKLMREGSTSGVDYITIVNILGSCLTHEDLIKYGIPIHAHTVVTGFDLDQHVQSSLIT 508

Query: 295 MYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSI 354
           MY+KCGDL SS  +F+Q+  K+   W AII+   + G   EAL   ++MR    +  D  
Sbjct: 509 MYAKCGDLHSSSYIFDQLVFKTSSVWNAIIAANARYGFGEEALKLVVRMRSAGIE-FDQF 567

Query: 355 TLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM 414
              + L+ + +LA LE   QLHG   + GF     + N  +  Y KCG +D A  +  + 
Sbjct: 568 NFSTALSVAADLAMLEEGQQLHGSTIKLGFELDHFIINAAMDMYGKCGELDDALRILPQP 627

Query: 415 GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDG 474
              R  +SWNT+I     +G    A   +H M + G  P+  +++ +L+AC H GL ++G
Sbjct: 628 T-DRSRLSWNTLISISARHGQFHKAKETFHDMLKLGVKPNHVSFVCLLSACSHGGLVDEG 686

Query: 475 LVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN--IWRALLSG 532
           L  +  M     ++P  EH  C++DLL R+G L +A     ++   + PN  +WR+LL+ 
Sbjct: 687 LAYYASMTSVYGIQPGIEHCVCMIDLLGRSGRLVEAEAFITEM--PIPPNDLVWRSLLAS 744

Query: 533 CVLH 536
           C ++
Sbjct: 745 CRIY 748



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 155/588 (26%), Positives = 271/588 (46%), Gaps = 36/588 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  +  +  Y   G +  A+ +F+E+P++NVVSW+ ++  YS NG  ++ +  +  M 
Sbjct: 93  DVFVGTSFVHFYASYGIVSNAQKMFNEMPDRNVVSWTSLMVSYSDNGSKKEVINTYKRMR 152

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES------------------- 104
             G+  N   +  V+ +   L ++ L   + G  +KFGLE+                   
Sbjct: 153 HEGICCNENNIALVISSCGFLMDIILGHQLLGHALKFGLETKVSAANSLIFMFGGCGDIN 212

Query: 105 ---DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +F  +     +S N+I++    N L +++   F++ R      N  T+  ++  C 
Sbjct: 213 EACSIFNEMNERDTISWNSIISANAQNTLHEESFRYFHWMRLVHEEINYTTLSILLSICG 272

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
           ++      + +HGL +K GL  ++ + N++L +YS       A  IFR M  +D+ISW  
Sbjct: 273 SVDYLKWGKGVHGLAVKYGLESNICLCNTLLSVYSDAGRSKDAELIFRRMPERDLISWNS 332

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+  +V       ALK+F EM   +   + V   + ++          GK LH  VV+ G
Sbjct: 333 MLACYVQDGRCLCALKVFAEMLWMKKEINYVTFTSALAACLDPEFFTNGKILHGFVVVLG 392

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           LQ EL + N++I  Y KC  +  ++ VF ++ +   V+W A+I G+  N    EA+  F 
Sbjct: 393 LQDELIIGNTLITFYGKCHKMAEAKKVFQRMPKLDKVTWNALIGGFANNAELNEAVAAFK 452

Query: 342 KMRQEKTDSVDSITLVSILTA---SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
            MR+  T  VD IT+V+IL +     +L    I +  H +    GF   + VQ+ LI+ Y
Sbjct: 453 LMREGSTSGVDYITIVNILGSCLTHEDLIKYGIPIHAHTVV--TGFDLDQHVQSSLITMY 510

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
           +KCG++  +  +F+++ F    V WN II      G GE AL L  +M   G   D   +
Sbjct: 511 AKCGDLHSSSYIFDQLVFKTSSV-WNAIIAANARYGFGEEALKLVVRMRSAGIEFDQFNF 569

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY--GCVVDLLARAGCLSDASGLAGK 516
            + L+      +  +G  +    I   K+    +H+     +D+  + G L DA  +  +
Sbjct: 570 STALSVAADLAMLEEGQQLHGSTI---KLGFELDHFIINAAMDMYGKCGELDDALRILPQ 626

Query: 517 LLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFL 564
             +    + W  L+S    H G+F  A+       K G +K   +SF+
Sbjct: 627 PTDRSRLS-WNTLISISARH-GQFHKAKETFHDMLKLG-VKPNHVSFV 671



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 141/550 (25%), Positives = 251/550 (45%), Gaps = 43/550 (7%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTM 74
           Y K G+I  A+ +FD + E+N  SW+ ++ GY   G + +++  F  +   G+ P+ F M
Sbjct: 2   YSKFGRINYAQLVFDRMSERNEASWNHMMSGYVRVGSYVEAVLFFRDICGIGIKPSGF-M 60

Query: 75  VGVLVAAAGLQNLELAR--SIHGLMVKFGLESDLFEG----------------------L 110
           +  LV A    ++        HG  +K GL  D+F G                      +
Sbjct: 61  IASLVTACNKSSIMAKEGFQFHGFAIKCGLIYDVFVGTSFVHFYASYGIVSNAQKMFNEM 120

Query: 111 KNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCE 170
            +  +VS  +++  + +N   ++ +  +   R  G+  N   +  VI  C  L    L  
Sbjct: 121 PDRNVVSWTSLMVSYSDNGSKKEVINTYKRMRHEGICCNENNIALVISSCGFLMDIILGH 180

Query: 171 LIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFE 230
            + G  +K GL   VS  NS++ M+    D++ A  IF EM  +D ISW  ++       
Sbjct: 181 QLLGHALKFGLETKVSAANSLIFMFGGCGDINEACSIFNEMNERDTISWNSIISANAQNT 240

Query: 231 YAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSN 290
              ++ + F  MR      +   L  L+S+   +  LK GK +H   V  GL+S + L N
Sbjct: 241 LHEESFRYFHWMRLVHEEINYTTLSILLSICGSVDYLKWGKGVHGLAVKYGLESNICLCN 300

Query: 291 SIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNG---CAREALNQFIKMRQEK 347
           +++++YS  G    +  +F ++ E+ L+SW ++++ YVQ+G   CA +   + + M++E 
Sbjct: 301 TLLSVYSDAGRSKDAELIFRRMPERDLISWNSMLACYVQDGRCLCALKVFAEMLWMKKE- 359

Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
              ++ +T  S L A  +         LHG     G      + N LI+ Y KC  +  A
Sbjct: 360 ---INYVTFTSALAACLDPEFFTNGKILHGFVVVLGLQDELIIGNTLITFYGKCHKMAEA 416

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTE-TGEVPDSSTYLSILNACG 466
             VF+ M  L D V+WN +I G+  N     A+A +  M E +    D  T ++IL +C 
Sbjct: 417 KKVFQRMPKL-DKVTWNALIGGFANNAELNEAVAAFKLMREGSTSGVDYITIVNILGSC- 474

Query: 467 HAGLTNDGLVIFNQMIEENKVKP----SQEHYGCVVDLLARAGCLSDASGLAGKLLEGMG 522
              LT++ L+ +   I  + V       Q     ++ + A+ G L  +S +  +L+    
Sbjct: 475 ---LTHEDLIKYGIPIHAHTVVTGFDLDQHVQSSLITMYAKCGDLHSSSYIFDQLVFKT- 530

Query: 523 PNIWRALLSG 532
            ++W A+++ 
Sbjct: 531 SSVWNAIIAA 540



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 115/451 (25%), Positives = 202/451 (44%), Gaps = 44/451 (9%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           LLS Y  +G+ K+AE +F  +PE++++SW+ ++  Y  +G    ++K F+ M+      N
Sbjct: 302 LLSVYSDAGRSKDAELIFRRMPERDLISWNSMLACYVQDGRCLCALKVFAEMLWMKKEIN 361

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------------FE 108
             T    L A    +     + +HG +V  GL+ +L                      F+
Sbjct: 362 YVTFTSALAACLDPEFFTNGKILHGFVVVLGLQDELIIGNTLITFYGKCHKMAEAKKVFQ 421

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFR-GSGLVPNAVTMLTVIRGCVALGSRA 167
            +     V+ NA++ GF NN    +AV  F   R GS    + +T++ ++  C  L    
Sbjct: 422 RMPKLDKVTWNALIGGFANNAELNEAVAAFKLMREGSTSGVDYITIVNILGSC--LTHED 479

Query: 168 LCEL---IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
           L +    IH  T+  G  LD  V +S++ MY+   DL ++  IF ++  K    W  ++ 
Sbjct: 480 LIKYGIPIHAHTVVTGFDLDQHVQSSLITMYAKCGDLHSSSYIFDQLVFKTSSVWNAIIA 539

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
               + +  +ALK+   MR + I  D       +SV A L  L+ G+QLH   +  G + 
Sbjct: 540 ANARYGFGEEALKLVVRMRSAGIEFDQFNFSTALSVAADLAMLEEGQQLHGSTIKLGFEL 599

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           +  + N+ + MY KCG+LD +  +  Q T++S +SW  +IS   ++G   +A   F  M 
Sbjct: 600 DHFIINAAMDMYGKCGELDDALRILPQPTDRSRLSWNTLISISARHGQFHKAKETFHDML 659

Query: 345 Q--EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN------CLIS 396
           +   K + V  + L+S  +  G        L   G+A+ A       +Q       C+I 
Sbjct: 660 KLGVKPNHVSFVCLLSACSHGG--------LVDEGLAYYASMTSVYGIQPGIEHCVCMID 711

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
              + G +  A     EM    + + W +++
Sbjct: 712 LLGRSGRLVEAEAFITEMPIPPNDLVWRSLL 742



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 133/279 (47%), Gaps = 13/279 (4%)

Query: 194 MYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREM------RKSRI 247
           MYS    ++ A  +F  M  ++  SW  MM  +V      +A+  FR++          +
Sbjct: 1   MYSKFGRINYAQLVFDRMSERNEASWNHMMSGYVRVGSYVEAVLFFRDICGIGIKPSGFM 60

Query: 248 ICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRS 307
           I   V   N  S+ A     K G Q H   +  GL  ++ +  S +  Y+  G + +++ 
Sbjct: 61  IASLVTACNKSSIMA-----KEGFQFHGFAIKCGLIYDVFVGTSFVHFYASYGIVSNAQK 115

Query: 308 VFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELA 367
           +FN++ ++++VSWT+++  Y  NG  +E +N + +MR E     +   +  ++++ G L 
Sbjct: 116 MFNEMPDRNVVSWTSLMVSYSDNGSKKEVINTYKRMRHEGI-CCNENNIALVISSCGFLM 174

Query: 368 ALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
            + +  QL G A + G     S  N LI  +  CG+++ A  +F EM   RD +SWN+II
Sbjct: 175 DIILGHQLLGHALKFGLETKVSAANSLIFMFGGCGDINEACSIFNEMN-ERDTISWNSII 233

Query: 428 YGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
                N   E +   +H M    E  + +T   +L+ CG
Sbjct: 234 SANAQNTLHEESFRYFHWMRLVHEEINYTTLSILLSICG 272



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 76/180 (42%), Gaps = 22/180 (12%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  S L++ Y K G +  +  +FD++  K    W+ +I   +  GF E+++K    M
Sbjct: 498 LDQHVQSSLITMYAKCGDLHSSSYIFDQLVFKTSSVWNAIIAANARYGFGEEALKLVVRM 557

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--------------- 107
             +G+  + F     L  AA L  LE  + +HG  +K G E D F               
Sbjct: 558 RSAGIEFDQFNFSTALSVAADLAMLEEGQQLHGSTIKLGFELDHFIINAAMDMYGKCGEL 617

Query: 108 ----EGLKNPY---LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                 L  P     +S N +++    +  F +A   F+     G+ PN V+ + ++  C
Sbjct: 618 DDALRILPQPTDRSRLSWNTLISISARHGQFHKAKETFHDMLKLGVKPNHVSFVCLLSAC 677


>gi|356528519|ref|XP_003532850.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Glycine max]
          Length = 849

 Score =  231 bits (590), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 154/552 (27%), Positives = 271/552 (49%), Gaps = 25/552 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + L+  Y K G + EA  +FD +  K  V+W+ +I GY+  G  E S+K F+ M 
Sbjct: 188 DVYVGTSLIDFYAKRGYVDEARLIFDGLKVKTTVTWTAIIAGYAKLGRSEVSLKLFNQMR 247

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
              + P+ + +  VL A + L+ LE  + IHG +++ G + D                  
Sbjct: 248 EGDVYPDRYVISSVLSACSMLEFLEGGKQIHGYVLRRGFDMDVSVVNGIIDFYLKCHKVK 307

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               LF  L +  +VS   ++AG + N     A+ LF      G  P+A    +V+  C 
Sbjct: 308 TGRKLFNRLVDKDVVSWTTMIAGCMQNSFHGDAMDLFVEMVRKGWKPDAFGCTSVLNSCG 367

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
           +L +      +H   IK+ +  D  V N ++DMY+    L  A ++F  +   +V+S+  
Sbjct: 368 SLQALQKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTNARKVFDLVAAINVVSYNA 427

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+  +   +   +AL +FREMR S      +  ++L+ +++ L  L+   Q+H  ++  G
Sbjct: 428 MIEGYSRQDKLVEALDLFREMRLSLSPPTLLTFVSLLGLSSSLFLLELSSQIHCLIIKFG 487

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           +  +    +++I +YSKC  +  +R VF +I ++ +V W A+ SGY Q     E+L  + 
Sbjct: 488 VSLDSFAGSALIDVYSKCSCVGDARLVFEEIYDRDIVVWNAMFSGYSQQLENEESLKLYK 547

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
            ++  +    +  T  +++ A+  +A+L    Q H    + G      V N L+  Y+KC
Sbjct: 548 DLQMSRLKP-NEFTFAAVIAAASNIASLRHGQQFHNQVIKMGLDDDPFVTNSLVDMYAKC 606

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G+++ ++  F      RD+  WN++I  Y  +G    AL ++ +M   G  P+  T++ +
Sbjct: 607 GSIEESHKAFSSTN-QRDIACWNSMISTYAQHGDAAKALEVFERMIMEGVKPNYVTFVGL 665

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L+AC HAGL + G   F  M  +  ++P  +HY C+V LL RAG + +A     K+    
Sbjct: 666 LSACSHAGLLDLGFHHFESM-SKFGIEPGIDHYACMVSLLGRAGKIYEAKEFVKKMPIKP 724

Query: 522 GPNIWRALLSGC 533
              +WR+LLS C
Sbjct: 725 AAVVWRSLLSAC 736



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 150/532 (28%), Positives = 259/532 (48%), Gaps = 30/532 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + LL  Y K     +A+ LFD +P +N+V+WS ++  Y+ +G+  +++  F   M
Sbjct: 86  DVFLVNTLLHAYSKMNLQSDAQKLFDTMPHRNLVTWSSMVSMYTQHGYSVEALLLFCRFM 145

Query: 64  LS-GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
            S    PN + +  V+ A   L NL  A  +HG +VK G   D                 
Sbjct: 146 RSCSEKPNEYILASVVRACTQLGNLSQALQLHGFVVKGGFVQDVYVGTSLIDFYAKRGYV 205

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +F+GLK    V+  AI+AG+      + ++ LFN  R   + P+   + +V+  C
Sbjct: 206 DEARLIFDGLKVKTTVTWTAIIAGYAKLGRSEVSLKLFNQMREGDVYPDRYVISSVLSAC 265

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             L      + IHG  ++ G  +DVSV N ++D Y     +    ++F  +  KDV+SWT
Sbjct: 266 SMLEFLEGGKQIHGYVLRRGFDMDVSVVNGIIDFYLKCHKVKTGRKLFNRLVDKDVVSWT 325

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+   +   + GDA+ +F EM +     D     ++++    L  L++G+Q+HA  +  
Sbjct: 326 TMIAGCMQNSFHGDAMDLFVEMVRKGWKPDAFGCTSVLNSCGSLQALQKGRQVHAYAIKV 385

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
            + ++  + N +I MY+KC  L ++R VF+ +   ++VS+ A+I GY +     EAL+ F
Sbjct: 386 NIDNDDFVKNGLIDMYAKCDSLTNARKVFDLVAAINVVSYNAMIEGYSRQDKLVEALDLF 445

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            +MR   +     +T VS+L  S  L  LE+  Q+H +  + G        + LI  YSK
Sbjct: 446 REMRLSLSPPT-LLTFVSLLGLSSSLFLLELSSQIHCLIIKFGVSLDSFAGSALIDVYSK 504

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           C  V  A +VFEE+ + RD+V WN +  GY      E +L LY  +  +   P+  T+ +
Sbjct: 505 CSCVGDARLVFEEI-YDRDIVVWNAMFSGYSQQLENEESLKLYKDLQMSRLKPNEFTFAA 563

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY--GCVVDLLARAGCLSDA 510
           ++ A  +      G    NQ+I   K+    + +    +VD+ A+ G + ++
Sbjct: 564 VIAAASNIASLRHGQQFHNQVI---KMGLDDDPFVTNSLVDMYAKCGSIEES 612



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 127/483 (26%), Positives = 229/483 (47%), Gaps = 34/483 (7%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTM 74
           Y K  K+K    LF+ + +K+VVSW+ +I G   N FH  +M  F  M+  G  P++F  
Sbjct: 300 YLKCHKVKTGRKLFNRLVDKDVVSWTTMIAGCMQNSFHGDAMDLFVEMVRKGWKPDAFGC 359

Query: 75  VGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY------------------ 114
             VL +   LQ L+  R +H   +K  +++D F   GL + Y                  
Sbjct: 360 TSVLNSCGSLQALQKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTNARKVFDLVAA 419

Query: 115 --LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELI 172
             +VS NA++ G+       +A+ LF   R S   P  +T ++++    +L    L   I
Sbjct: 420 INVVSYNAMIEGYSRQDKLVEALDLFREMRLSLSPPTLLTFVSLLGLSSSLFLLELSSQI 479

Query: 173 HGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYA 232
           H L IK G+ LD    ++++D+YS    +  A  +F E+  +D++ W  M   +      
Sbjct: 480 HCLIIKFGVSLDSFAGSALIDVYSKCSCVGDARLVFEEIYDRDIVVWNAMFSGYSQQLEN 539

Query: 233 GDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSI 292
            ++LK++++++ SR+  +      +I+  + +  L+ G+Q H QV+  GL  +  ++NS+
Sbjct: 540 EESLKLYKDLQMSRLKPNEFTFAAVIAAASNIASLRHGQQFHNQVIKMGLDDDPFVTNSL 599

Query: 293 IAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVD 352
           + MY+KCG ++ S   F+   ++ +  W ++IS Y Q+G A +AL  F +M  E     +
Sbjct: 600 VDMYAKCGSIEESHKAFSSTNQRDIACWNSMISTYAQHGDAAKALEVFERMIMEGVKP-N 658

Query: 353 SITLVSILTASGELAALEICLQ----LHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
            +T V +L+A      L++       +     E G   Y     C++S   + G +  A 
Sbjct: 659 YVTFVGLLSACSHAGLLDLGFHHFESMSKFGIEPGIDHYA----CMVSLLGRAGKIYEAK 714

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALY-HKMTETGEVPDSSTYLSILNACGH 467
              ++M      V W +++    V+GH E  L  Y  +M  + +  DS +Y+ + N    
Sbjct: 715 EFVKKMPIKPAAVVWRSLLSACRVSGHVE--LGTYAAEMAISCDPADSGSYILLSNIFAS 772

Query: 468 AGL 470
            G+
Sbjct: 773 KGM 775



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 127/455 (27%), Positives = 234/455 (51%), Gaps = 15/455 (3%)

Query: 99  KFGLESD---LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLF-NFFRGSGLVPNAVTML 154
           K  L+SD   LF+ + +  LV+ +++V+ +  +    +A+LLF  F R     PN   + 
Sbjct: 99  KMNLQSDAQKLFDTMPHRNLVTWSSMVSMYTQHGYSVEALLLFCRFMRSCSEKPNEYILA 158

Query: 155 TVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
           +V+R C  LG+ +    +HG  +K G + DV V  S++D Y+    +D A  IF  ++ K
Sbjct: 159 SVVRACTQLGNLSQALQLHGFVVKGGFVQDVYVGTSLIDFYAKRGYVDEARLIFDGLKVK 218

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
             ++WT ++  +     +  +LK+F +MR+  +  D   + +++S  ++L  L+ GKQ+H
Sbjct: 219 TTVTWTAIIAGYAKLGRSEVSLKLFNQMREGDVYPDRYVISSVLSACSMLEFLEGGKQIH 278

Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
             V+  G   ++ + N II  Y KC  + + R +FN++ +K +VSWT +I+G +QN    
Sbjct: 279 GYVLRRGFDMDVSVVNGIIDFYLKCHKVKTGRKLFNRLVDKDVVSWTTMIAGCMQNSFHG 338

Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
           +A++ F++M + K    D+    S+L + G L AL+   Q+H  A +        V+N L
Sbjct: 339 DAMDLFVEMVR-KGWKPDAFGCTSVLNSCGSLQALQKGRQVHAYAIKVNIDNDDFVKNGL 397

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           I  Y+KC ++  A  VF+ +  + +VVS+N +I GY        AL L+ +M  +   P 
Sbjct: 398 IDMYAKCDSLTNARKVFDLVAAI-NVVSYNAMIEGYSRQDKLVEALDLFREMRLSLSPPT 456

Query: 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYG--CVVDLLARAGCLSDASG 512
             T++S+L       L      I   +I   K   S + +    ++D+ ++  C+ DA  
Sbjct: 457 LLTFVSLLGLSSSLFLLELSSQIHCLII---KFGVSLDSFAGSALIDVYSKCSCVGDAR- 512

Query: 513 LAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALR 547
           L  + +      +W A+ SG   +  + ++ E+L+
Sbjct: 513 LVFEEIYDRDIVVWNAMFSG---YSQQLENEESLK 544



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 157/342 (45%), Gaps = 39/342 (11%)

Query: 237 KIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQ-VVLGGLQSELRLSNSIIAM 295
           KI RE+ K         LL L S N +       K++HA  VVLG  Q ++ L N+++  
Sbjct: 48  KIGRELGK---------LLQLPSPNILTSHYY--KKIHAHIVVLGFHQHDVFLVNTLLHA 96

Query: 296 YSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSIT 355
           YSK      ++ +F+ +  ++LV+W++++S Y Q+G + EAL  F +  +  ++  +   
Sbjct: 97  YSKMNLQSDAQKLFDTMPHRNLVTWSSMVSMYTQHGYSVEALLLFCRFMRSCSEKPNEYI 156

Query: 356 LVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMG 415
           L S++ A  +L  L   LQLHG   + GF +   V   LI  Y+K G VD A ++F+ + 
Sbjct: 157 LASVVRACTQLGNLSQALQLHGFVVKGGFVQDVYVGTSLIDFYAKRGYVDEARLIFDGLK 216

Query: 416 FLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGL 475
            ++  V+W  II GY   G  E +L L+++M E    PD     S+L+AC        G 
Sbjct: 217 -VKTTVTWTAIIAGYAKLGRSEVSLKLFNQMREGDVYPDRYVISSVLSACSMLEFLEGGK 275

Query: 476 VIFNQMIEE-------------------NKVKPSQEHYGCVVD------LLARAGCLSDA 510
            I   ++                     +KVK  ++ +  +VD          AGC+ ++
Sbjct: 276 QIHGYVLRRGFDMDVSVVNGIIDFYLKCHKVKTGRKLFNRLVDKDVVSWTTMIAGCMQNS 335

Query: 511 -SGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQ 551
             G A  L   M    W+    GC   +      +AL+ G Q
Sbjct: 336 FHGDAMDLFVEMVRKGWKPDAFGCTSVLNSCGSLQALQKGRQ 377



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 89/184 (48%), Gaps = 22/184 (11%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  S L+  Y K   + +A  +F+EI ++++V W+ +  GYS    +E+S+K +  +
Sbjct: 490 LDSFAGSALIDVYSKCSCVGDARLVFEEIYDRDIVVWNAMFSGYSQQLENEESLKLYKDL 549

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--------------- 107
            +S L PN FT   V+ AA+ + +L   +  H  ++K GL+ D F               
Sbjct: 550 QMSRLKPNEFTFAAVIAAASNIASLRHGQQFHNQVIKMGLDDDPFVTNSLVDMYAKCGSI 609

Query: 108 -EGLK-----NPYLVSC-NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
            E  K     N   ++C N++++ +  +    +A+ +F      G+ PN VT + ++  C
Sbjct: 610 EESHKAFSSTNQRDIACWNSMISTYAQHGDAAKALEVFERMIMEGVKPNYVTFVGLLSAC 669

Query: 161 VALG 164
              G
Sbjct: 670 SHAG 673


>gi|297596789|ref|NP_001043072.2| Os01g0374200 [Oryza sativa Japonica Group]
 gi|255673241|dbj|BAF04986.2| Os01g0374200 [Oryza sativa Japonica Group]
          Length = 629

 Score =  231 bits (590), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 155/525 (29%), Positives = 264/525 (50%), Gaps = 39/525 (7%)

Query: 82  AGLQNLELARSIHGLMVKFGLESD---LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLF 138
           + + N+ +  S+  +  K G+ SD   +F+G+      S + +VAG+   K  ++A  LF
Sbjct: 42  SAVSNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLF 101

Query: 139 NFFRGSGLVPNAVTMLTVIRGCVALGSRALC-ELIHGLTIKLGLILDVSVNNSVLDMYSC 197
                      +  + T +   V++    L  E +HGL +K GL+  VSV NS++ MY+ 
Sbjct: 102 RLMLEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAK 161

Query: 198 LMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNL 257
              + AA  +F     ++ I+W+ M+  +     A  A+ +F +M  +         + +
Sbjct: 162 AGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGV 221

Query: 258 ISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSL 317
           ++ ++ LG L  GKQ H  +V  G + ++ + ++++ MY+KCG +  ++  F+Q+ E  +
Sbjct: 222 LNASSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDI 281

Query: 318 VSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHG 377
           V WTA++SG+VQNG   EAL  + +M +E      S T+ S L A   +AALE   QLH 
Sbjct: 282 VLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKS-TIASGLRACAGIAALEPGKQLHT 340

Query: 378 IAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGE 437
              + G      V + L + YSKCGN++    VF  +   RDV++WN+II G+  NG G 
Sbjct: 341 QIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPD-RDVIAWNSIISGFSQNGCGN 399

Query: 438 TALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCV 497
            AL L+ +M   G +PD+ T+++IL AC H GL + G   F+ M ++  + P  +HY C+
Sbjct: 400 GALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDHYACM 459

Query: 498 VDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGC---------------VLHVG---- 538
           VD+L+RAG L +A      +    G  +WR +L  C               ++ +G    
Sbjct: 460 VDILSRAGMLKEAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGERLMELGTGDS 519

Query: 539 --------------RFQDAEALRSGSQKKGIIKIPGISFLNSTSR 569
                         ++ D E +R   + +G+ K PG S++   SR
Sbjct: 520 SAYILLSNIYASQRKWNDVERVRHLMRLRGVNKDPGCSWVELNSR 564



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 117/391 (29%), Positives = 198/391 (50%), Gaps = 30/391 (7%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y  + LL+ Y K G + +A  +FD +P++N  SWS ++ GY+     E++   F  M+  
Sbjct: 48  YVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLMLEE 107

Query: 66  GLLPNS-FTMVGVLVAAAGLQNLELARSIHGLMVKFGL------ESDL------------ 106
                S F    VL A +    L +   +HGL+VK GL      E+ L            
Sbjct: 108 CPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGA 167

Query: 107 ----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA 162
               FE  +    ++ +A++ G+  N     AV +F+    +G  P   T + V+     
Sbjct: 168 AFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSD 227

Query: 163 LGSRALCELIHGLTIKLGLILDVSVNNSVLDMYS---CLMDLDAAIQIFREMECKDVISW 219
           LG+ A+ +  HGL +KLG  + + V ++++DMY+   C+ D   A + F ++   D++ W
Sbjct: 228 LGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIAD---AKEGFDQLYEVDIVLW 284

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           T M+   V      +AL ++  M K  II     + + +   A +  L+ GKQLH Q+V 
Sbjct: 285 TAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIVK 344

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            GL     + +++  MYSKCG+L+   SVF +I ++ +++W +IISG+ QNGC   AL+ 
Sbjct: 345 YGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGNGALDL 404

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALE 370
           F +M+ E T   D+IT ++IL A   +  ++
Sbjct: 405 FEEMKMEGTIP-DNITFINILCACSHMGLVD 434


>gi|224141409|ref|XP_002324065.1| predicted protein [Populus trichocarpa]
 gi|222867067|gb|EEF04198.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  231 bits (590), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 142/501 (28%), Positives = 251/501 (50%), Gaps = 33/501 (6%)

Query: 67  LLPNSFT------MVGVLVAAAGLQNLELARSIHGLMV---------------------- 98
           L PN+ +      ++ +L  +A  +NL++ ++IH  ++                      
Sbjct: 19  LRPNAVSPSSPLDLIKLLKLSADTKNLKVGKTIHSHLIVTSRATENSIIEVNSLINFYAK 78

Query: 99  --KFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLV-PNAVTMLT 155
             +  +  +LF+ +    +VS +A++ G++ N    + + L       G V PN   +  
Sbjct: 79  VNQVSIAHNLFDRMPERNVVSWSALMTGYLLNGFSLKVIRLLKDMISEGNVSPNEYILAI 138

Query: 156 VIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKD 215
            I  C   G        HGL +K G      V N+++ MYS    +  A+ ++ E+   D
Sbjct: 139 AISSCCDRGRVEEGRQCHGLLLKTGFSFHNYVRNALVSMYSKCSIVQDAMGVWNEVPVND 198

Query: 216 VISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
           ++++  ++   V+  Y  + L++ R M    +  D V  +N  S+ A L DL+ G  +H 
Sbjct: 199 IVAYNSILSSLVENGYLREGLEVLRSMVSESVKWDKVTFVNAFSLCASLKDLRLGLHVHG 258

Query: 276 QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
           +++   ++ +  +S++II MY KCG    +R VF+ +  +++V WTA+++   QNGC  E
Sbjct: 259 KMLTSDVECDAYVSSAIINMYGKCGKSLMARGVFDGLQSRNVVLWTAVMASCFQNGCFEE 318

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLI 395
           ALN F KM QE   S +  T   +L A   L+A      LHG + ++GF  +  V N LI
Sbjct: 319 ALNLFSKMEQENVKS-NEFTYAVLLNACAGLSARRNGSLLHGHSEKSGFKHHVMVGNALI 377

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
           + Y+K G+++ A  VF +M   RD+++WN +I G+  +G G+ AL ++  M    E P+ 
Sbjct: 378 NMYAKSGDIEAAKKVFSDM-MHRDIITWNAMICGFSHHGLGKKALLVFQDMLAAEEHPNY 436

Query: 456 STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAG 515
            T+  +L+ACGH GL  +G    + ++++  V+P  EHY C+V LL++ G L++A     
Sbjct: 437 VTFTGVLSACGHLGLVQEGFYYLHHLMKQFGVQPGLEHYTCIVSLLSKTGQLNEARNFMR 496

Query: 516 KLLEGMGPNIWRALLSGCVLH 536
                     WR LL+ C +H
Sbjct: 497 TAPVKWDVVAWRTLLNACHVH 517



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 105/441 (23%), Positives = 205/441 (46%), Gaps = 25/441 (5%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSG-LLP 69
           L++ Y K  ++  A NLFD +PE+NVVSWS ++ GY +NGF  K ++    M+  G + P
Sbjct: 72  LINFYAKVNQVSIAHNLFDRMPERNVVSWSALMTGYLLNGFSLKVIRLLKDMISEGNVSP 131

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVK--FGLESDLFEGLKNPY------------- 114
           N + +   + +      +E  R  HGL++K  F   + +   L + Y             
Sbjct: 132 NEYILAIAISSCCDRGRVEEGRQCHGLLLKTGFSFHNYVRNALVSMYSKCSIVQDAMGVW 191

Query: 115 -------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRA 167
                  +V+ N+I++  + N   ++ + +        +  + VT +     C +L    
Sbjct: 192 NEVPVNDIVAYNSILSSLVENGYLREGLEVLRSMVSESVKWDKVTFVNAFSLCASLKDLR 251

Query: 168 LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
           L   +HG  +   +  D  V++++++MY        A  +F  ++ ++V+ WT +M    
Sbjct: 252 LGLHVHGKMLTSDVECDAYVSSAIINMYGKCGKSLMARGVFDGLQSRNVVLWTAVMASCF 311

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
                 +AL +F +M +  +  +      L++  A L   + G  LH      G +  + 
Sbjct: 312 QNGCFEEALNLFSKMEQENVKSNEFTYAVLLNACAGLSARRNGSLLHGHSEKSGFKHHVM 371

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
           + N++I MY+K GD+++++ VF+ +  + +++W A+I G+  +G  ++AL  F  M   +
Sbjct: 372 VGNALINMYAKSGDIEAAKKVFSDMMHRDIITWNAMICGFSHHGLGKKALLVFQDMLAAE 431

Query: 348 TDSVDSITLVSILTASGELAAL-EICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
            +  + +T   +L+A G L  + E    LH +  + G         C++S  SK G ++ 
Sbjct: 432 -EHPNYVTFTGVLSACGHLGLVQEGFYYLHHLMKQFGVQPGLEHYTCIVSLLSKTGQLNE 490

Query: 407 AYIVFEEMGFLRDVVSWNTII 427
           A           DVV+W T++
Sbjct: 491 ARNFMRTAPVKWDVVAWRTLL 511



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 163/345 (47%), Gaps = 24/345 (6%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y  + L+S Y K   +++A  +++E+P  ++V+++ ++     NG+  + ++    M+  
Sbjct: 169 YVRNALVSMYSKCSIVQDAMGVWNEVPVNDIVAYNSILSSLVENGYLREGLEVLRSMVSE 228

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-------------------- 105
            +  +  T V      A L++L L   +HG M+   +E D                    
Sbjct: 229 SVKWDKVTFVNAFSLCASLKDLRLGLHVHGKMLTSDVECDAYVSSAIINMYGKCGKSLMA 288

Query: 106 --LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
             +F+GL++  +V   A++A    N  F++A+ LF+      +  N  T   ++  C  L
Sbjct: 289 RGVFDGLQSRNVVLWTAVMASCFQNGCFEEALNLFSKMEQENVKSNEFTYAVLLNACAGL 348

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
            +R    L+HG + K G    V V N++++MY+   D++AA ++F +M  +D+I+W  M+
Sbjct: 349 SARRNGSLLHGHSEKSGFKHHVMVGNALINMYAKSGDIEAAKKVFSDMMHRDIITWNAMI 408

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG-KQLHAQVVLGGL 282
             F        AL +F++M  +    + V    ++S    LG ++ G   LH  +   G+
Sbjct: 409 CGFSHHGLGKKALLVFQDMLAAEEHPNYVTFTGVLSACGHLGLVQEGFYYLHHLMKQFGV 468

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK-SLVSWTAIISG 326
           Q  L     I+++ SK G L+ +R+       K  +V+W  +++ 
Sbjct: 469 QPGLEHYTCIVSLLSKTGQLNEARNFMRTAPVKWDVVAWRTLLNA 513



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 107/244 (43%), Gaps = 24/244 (9%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y SS +++ Y K GK   A  +FD +  +NVV W+ V+     NG  E+++  FS M 
Sbjct: 268 DAYVSSAIINMYGKCGKSLMARGVFDGLQSRNVVLWTAVMASCFQNGCFEEALNLFSKME 327

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPY------- 114
              +  N FT   +L A AGL        +HG   K G +  +  G  L N Y       
Sbjct: 328 QENVKSNEFTYAVLLNACAGLSARRNGSLLHGHSEKSGFKHHVMVGNALINMYAKSGDIE 387

Query: 115 -------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                        +++ NA++ GF ++ L ++A+L+F     +   PN VT   V+  C 
Sbjct: 388 AAKKVFSDMMHRDIITWNAMICGFSHHGLGKKALLVFQDMLAAEEHPNYVTFTGVLSACG 447

Query: 162 ALG-SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK-DVISW 219
            LG  +     +H L  + G+   +     ++ + S    L+ A    R    K DV++W
Sbjct: 448 HLGLVQEGFYYLHHLMKQFGVQPGLEHYTCIVSLLSKTGQLNEARNFMRTAPVKWDVVAW 507

Query: 220 TRMM 223
             ++
Sbjct: 508 RTLL 511


>gi|225441321|ref|XP_002274344.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 739

 Score =  231 bits (589), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 158/560 (28%), Positives = 282/560 (50%), Gaps = 39/560 (6%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           +SKL++ Y +    + A ++ +   E N V W+ +I  +  +G    ++  +  M   G+
Sbjct: 86  ASKLITLYSQLNDFRSAFSICNSFEEPNTVIWNSIIKSHVDSGLFGYALLQYGRMRELGV 145

Query: 68  LPNSFTMVGVLVAAAGLQ-NLELARSIHGLMVKFGLESD--------------------- 105
             +SFT   +  A   L   +E   ++H + +K G   D                     
Sbjct: 146 AHDSFTFPIINQAIWSLGCRVEYGETVHCVAMKMGFGQDVYFGNTMLEVYVKCGSIGNAS 205

Query: 106 -LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
            LF+ + +  LVS  +I++G+I  + F +   LFN  R   + PN+VTM+ +++ C A  
Sbjct: 206 KLFDEMTHRDLVSWTSIISGYIYGESFSRGFKLFNKMRME-MEPNSVTMVVMLQACSAFE 264

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQ-IFREMECKDVISWTRMM 223
           S      +H   IK G ++D SV NS+L MY+        ++  F E+E +D+ISW  ++
Sbjct: 265 SVNEGRELHSYVIKKGFMVDRSVQNSILRMYTKTGGSGEEVETFFSEIEERDIISWNILI 324

Query: 224 GLFVDFEYAGDALKI---FREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
             +    + GD  ++   F EMR+  +     +L  ++S  A   +L  G  LH   +  
Sbjct: 325 AFY---SFRGDIAEVAERFNEMRR-EVTSSIESLTLVVSAIANCANLSEGGMLHCSAIKT 380

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           GL   + L   ++A+Y+KCG L+ S  +F  I  ++ ++W++++SG+ QNG  +EA+  +
Sbjct: 381 GLHDTV-LMTCLLALYAKCGALEISAQLFRDIPHRNSITWSSMMSGFTQNGFFKEAIELY 439

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFE--AGFPRYRS--VQNCLIS 396
            +M          I + +++ A   L AL++    H       + +P   S  ++  L++
Sbjct: 440 QQMLASGLQPNHDI-ISTLVIAYTHLGALQLGKATHAFFIRNLSSWPEEDSAPLETSLLN 498

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
            Y +CG++  A I F  +  ++DVV+W ++I G+G +G    AL  +  M E+   P+S 
Sbjct: 499 MYIRCGSISSALICFNRV-VVKDVVTWTSMIEGFGTHGLAFEALKFFKSMLESEVQPNSV 557

Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK 516
           T+LS+L+AC H+GL  +G  +F+ M    +++P   HY C+VDLL R+G L +A  +  K
Sbjct: 558 TFLSLLSACSHSGLVREGCEVFHSMKWGFRIEPDLNHYTCMVDLLGRSGKLKEALTVILK 617

Query: 517 LLEGMGPNIWRALLSGCVLH 536
           L+      IW ALL+   +H
Sbjct: 618 LVTCPDSRIWGALLAASRVH 637



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 124/492 (25%), Positives = 219/492 (44%), Gaps = 46/492 (9%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + +L  Y K G I  A  LFDE+  +++VSW+ +I GY       +  K F+ M 
Sbjct: 184 DVYFGNTMLEVYVKCGSIGNASKLFDEMTHRDLVSWTSIISGYIYGESFSRGFKLFNKMR 243

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
           +  + PNS TMV +L A +  +++   R +H  ++K G   D                  
Sbjct: 244 ME-MEPNSVTMVVMLQACSAFESVNEGRELHSYVIKKGFMVDRSVQNSILRMYTKTGGSG 302

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                 F  ++   ++S N ++A +       +    FN  R    V +++  LT++   
Sbjct: 303 EEVETFFSEIEERDIISWNILIAFYSFRGDIAEVAERFNEMRRE--VTSSIESLTLVVSA 360

Query: 161 VALGSRALCE--LIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
           +A     L E  ++H   IK GL  D  +   +L +Y+    L+ + Q+FR++  ++ I+
Sbjct: 361 IA-NCANLSEGGMLHCSAIKTGL-HDTVLMTCLLALYAKCGALEISAQLFRDIPHRNSIT 418

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           W+ MM  F    +  +A++++++M  S +  +   +  L+     LG L+ GK  HA  +
Sbjct: 419 WSSMMSGFTQNGFFKEAIELYQQMLASGLQPNHDIISTLVIAYTHLGALQLGKATHAFFI 478

Query: 279 --LGGLQSE--LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
             L     E    L  S++ MY +CG + S+   FN++  K +V+WT++I G+  +G A 
Sbjct: 479 RNLSSWPEEDSAPLETSLLNMYIRCGSISSALICFNRVVVKDVVTWTSMIEGFGTHGLAF 538

Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAAL-EICLQLH----GIAFEAGFPRYRS 389
           EAL +F K   E     +S+T +S+L+A      + E C   H    G   E     Y  
Sbjct: 539 EAL-KFFKSMLESEVQPNSVTFLSLLSACSHSGLVREGCEVFHSMKWGFRIEPDLNHY-- 595

Query: 390 VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
              C++    + G +  A  V  ++    D   W  ++    V  H +  L  Y      
Sbjct: 596 --TCMVDLLGRSGKLKEALTVILKLVTCPDSRIWGALLAASRV--HEDKKLGEYAAEKLL 651

Query: 450 GEVPDSSTYLSI 461
              PD+  Y ++
Sbjct: 652 ELEPDNVGYYTL 663



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 128/268 (47%), Gaps = 11/268 (4%)

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           IH   I       +SV + ++ +YS L D  +A  I    E  + + W  ++   VD   
Sbjct: 70  IHASLIVSSGFQPLSVASKLITLYSQLNDFRSAFSICNSFEEPNTVIWNSIIKSHVDSGL 129

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILG-DLKRGKQLHAQVVLGGLQSELRLSN 290
            G AL  +  MR+  +  D+     +      LG  ++ G+ +H   +  G   ++   N
Sbjct: 130 FGYALLQYGRMRELGVAHDSFTFPIINQAIWSLGCRVEYGETVHCVAMKMGFGQDVYFGN 189

Query: 291 SIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDS 350
           +++ +Y KCG + ++  +F+++T + LVSWT+IISGY+           F KMR E    
Sbjct: 190 TMLEVYVKCGSIGNASKLFDEMTHRDLVSWTSIISGYIYGESFSRGFKLFNKMRMEMEP- 248

Query: 351 VDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG----NVDL 406
            +S+T+V +L A     ++    +LH    + GF   RSVQN ++  Y+K G     V+ 
Sbjct: 249 -NSVTMVVMLQACSAFESVNEGRELHSYVIKKGFMVDRSVQNSILRMYTKTGGSGEEVET 307

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNG 434
            +   EE    RD++SWN +I  Y   G
Sbjct: 308 FFSEIEE----RDIISWNILIAFYSFRG 331



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 113/220 (51%), Gaps = 4/220 (1%)

Query: 266 DLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIIS 325
           +L+  K++HA +++      L +++ +I +YS+  D  S+ S+ N   E + V W +II 
Sbjct: 63  NLQALKRIHASLIVSSGFQPLSVASKLITLYSQLNDFRSAFSICNSFEEPNTVIWNSIIK 122

Query: 326 GYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAA-LEICLQLHGIAFEAGF 384
            +V +G    AL Q+ +MR E   + DS T   I  A   L   +E    +H +A + GF
Sbjct: 123 SHVDSGLFGYALLQYGRMR-ELGVAHDSFTFPIINQAIWSLGCRVEYGETVHCVAMKMGF 181

Query: 385 PRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH 444
            +     N ++  Y KCG++  A  +F+EM   RD+VSW +II GY           L++
Sbjct: 182 GQDVYFGNTMLEVYVKCGSIGNASKLFDEMTH-RDLVSWTSIISGYIYGESFSRGFKLFN 240

Query: 445 KMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEE 484
           KM    E P+S T + +L AC      N+G  + + +I++
Sbjct: 241 KMRMEME-PNSVTMVVMLQACSAFESVNEGRELHSYVIKK 279


>gi|449451241|ref|XP_004143370.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g03800-like [Cucumis sativus]
          Length = 908

 Score =  231 bits (589), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 156/591 (26%), Positives = 283/591 (47%), Gaps = 65/591 (10%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L+S Y K G +++A+ +F  +   NVVS++ +I G+S + + +++++ F  M+
Sbjct: 129 DIFLGNALISAYLKLGLVRDADKVFSGLSCPNVVSYTALISGFSKSDWEDEAVELFFAML 188

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES------------------- 104
            SG+ PN +T V +L A     + +L   +HG++VK GL S                   
Sbjct: 189 DSGIEPNEYTFVAILTACIRNMDYQLGSQVHGIVVKLGLLSCVFICNALMGLYCKCGFLD 248

Query: 105 ---DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRG----SGLVPNAVTMLTVI 157
               LFE +    + S N +++  +    + +A   F++FRG     GL  +  ++ T++
Sbjct: 249 LVLRLFEEMPERDITSWNTVISSLVKEFKYDEA---FDYFRGMQLCKGLKVDHFSLSTLL 305

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
             C         + +H L +K+GL   +SV++S++  Y+     +    +F  M  +DVI
Sbjct: 306 TACAGSVKPMKGQQLHALALKVGLESHLSVSSSLIGFYTKCGSANDVTDLFETMPIRDVI 365

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIIC---------------------------- 249
           +WT M+  +++F     A+++F +M K   I                             
Sbjct: 366 TWTGMITSYMEFGMLDSAVEVFNKMPKRNCISYNAVLAGLSRNDDGSRALELFIEMLEEG 425

Query: 250 ---DTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSR 306
                  L ++I+   +L   K  +Q+   V+  G+ S   +  +++ MY++CG ++ + 
Sbjct: 426 VEISDCTLTSIITACGLLKSFKVSQQIQGFVMKFGILSNSCIETALVDMYTRCGRMEDAE 485

Query: 307 SVFNQ--ITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASG 364
            +F Q  +        T++I GY +NG   EA++ F   + E    +D +   SIL+  G
Sbjct: 486 KIFYQRSLENDYTAMLTSMICGYARNGKLNEAISLFHSGQSEGAIVMDEVMSTSILSLCG 545

Query: 365 ELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWN 424
            +   E+  Q+H  A ++G      V N  +S YSKC N+D A  VF  M  ++D+VSWN
Sbjct: 546 SIGFHEMGKQMHCHALKSGLITETGVGNATVSMYSKCWNMDDAVRVFNTMN-MQDIVSWN 604

Query: 425 TIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA--GLTNDGLVIFNQMI 482
            ++ G+ ++  G+ AL ++ KM + G  PDS T+  I++A  H    L +    +F  M 
Sbjct: 605 GLVAGHVLHWQGDKALGIWKKMEKAGIKPDSITFALIISAYKHTELNLVDSCRSLFVSME 664

Query: 483 EENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGC 533
            E+ +KP+ EHY   + +L R G L +A      +       +WRALL+ C
Sbjct: 665 TEHNIKPTLEHYASFISVLGRWGLLEEAEQTIRNMPLEPDVYVWRALLNSC 715



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 122/428 (28%), Positives = 211/428 (49%), Gaps = 40/428 (9%)

Query: 85  QNLELARSIHGLMVKFGLESD---LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFF 141
           +++ L  ++    +K GL  D   +F GL  P +VS  A+++GF  +    +AV LF   
Sbjct: 128 EDIFLGNALISAYLKLGLVRDADKVFSGLSCPNVVSYTALISGFSKSDWEDEAVELFFAM 187

Query: 142 RGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDL 201
             SG+ PN  T + ++  C+      L   +HG+ +KLGL+  V + N+++ +Y     L
Sbjct: 188 LDSGIEPNEYTFVAILTACIRNMDYQLGSQVHGIVVKLGLLSCVFICNALMGLYCKCGFL 247

Query: 202 DAAIQIFREMECKDVISW-TRMMGLFVDFEYAGDALKIFREMRKSR-IICDTVALLNLIS 259
           D  +++F EM  +D+ SW T +  L  +F+Y  +A   FR M+  + +  D  +L  L++
Sbjct: 248 DLVLRLFEEMPERDITSWNTVISSLVKEFKY-DEAFDYFRGMQLCKGLKVDHFSLSTLLT 306

Query: 260 VNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGD------------------ 301
             A      +G+QLHA  +  GL+S L +S+S+I  Y+KCG                   
Sbjct: 307 ACAGSVKPMKGQQLHALALKVGLESHLSVSSSLIGFYTKCGSANDVTDLFETMPIRDVIT 366

Query: 302 -------------LDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
                        LDS+  VFN++ +++ +S+ A+++G  +N     AL  FI+M +E  
Sbjct: 367 WTGMITSYMEFGMLDSAVEVFNKMPKRNCISYNAVLAGLSRNDDGSRALELFIEMLEEGV 426

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
           + +   TL SI+TA G L + ++  Q+ G   + G      ++  L+  Y++CG ++ A 
Sbjct: 427 E-ISDCTLTSIITACGLLKSFKVSQQIQGFVMKFGILSNSCIETALVDMYTRCGRMEDAE 485

Query: 409 IVFEEMGFLRDVVSW-NTIIYGYGVNGHGETALALYHK-MTETGEVPDSSTYLSILNACG 466
            +F +     D  +   ++I GY  NG    A++L+H   +E   V D     SIL+ CG
Sbjct: 486 KIFYQRSLENDYTAMLTSMICGYARNGKLNEAISLFHSGQSEGAIVMDEVMSTSILSLCG 545

Query: 467 HAGLTNDG 474
             G    G
Sbjct: 546 SIGFHEMG 553



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 118/484 (24%), Positives = 214/484 (44%), Gaps = 63/484 (13%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML-SGLLP 69
           L+  Y K G +     LF+E+PE+++ SW+ VI        ++++   F  M L  GL  
Sbjct: 237 LMGLYCKCGFLDLVLRLFEEMPERDITSWNTVISSLVKEFKYDEAFDYFRGMQLCKGLKV 296

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES----------------------DLF 107
           + F++  +L A AG       + +H L +K GLES                      DLF
Sbjct: 297 DHFSLSTLLTACAGSVKPMKGQQLHALALKVGLESHLSVSSSLIGFYTKCGSANDVTDLF 356

Query: 108 E-----------GLKNPYL--------------------VSCNAIVAGFINNKLFQQAVL 136
           E           G+   Y+                    +S NA++AG   N    +A+ 
Sbjct: 357 ETMPIRDVITWTGMITSYMEFGMLDSAVEVFNKMPKRNCISYNAVLAGLSRNDDGSRALE 416

Query: 137 LFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYS 196
           LF      G+  +  T+ ++I  C  L S  + + I G  +K G++ +  +  +++DMY+
Sbjct: 417 LFIEMLEEGVEISDCTLTSIITACGLLKSFKVSQQIQGFVMKFGILSNSCIETALVDMYT 476

Query: 197 CLMDLDAAIQIF--REMECKDVISWTRMMGLFVDFEYAGDALKIFRE-MRKSRIICDTVA 253
               ++ A +IF  R +E       T M+  +       +A+ +F     +  I+ D V 
Sbjct: 477 RCGRMEDAEKIFYQRSLENDYTAMLTSMICGYARNGKLNEAISLFHSGQSEGAIVMDEVM 536

Query: 254 LLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT 313
             +++S+   +G  + GKQ+H   +  GL +E  + N+ ++MYSKC ++D +  VFN + 
Sbjct: 537 STSILSLCGSIGFHEMGKQMHCHALKSGLITETGVGNATVSMYSKCWNMDDAVRVFNTMN 596

Query: 314 EKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTA--SGELAALEI 371
            + +VSW  +++G+V +    +AL  + KM +      DSIT   I++A    EL  ++ 
Sbjct: 597 MQDIVSWNGLVAGHVLHWQGDKALGIWKKMEKAGIKP-DSITFALIISAYKHTELNLVDS 655

Query: 372 CLQLHGIAFEAGFPRYRSVQN--CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYG 429
           C  L  ++ E       ++++    IS   + G ++ A      M    DV  W  ++  
Sbjct: 656 CRSLF-VSMETEHNIKPTLEHYASFISVLGRWGLLEEAEQTIRNMPLEPDVYVWRALLNS 714

Query: 430 YGVN 433
             +N
Sbjct: 715 CRIN 718



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 95/173 (54%), Gaps = 4/173 (2%)

Query: 255 LNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE 314
            +L+ ++   GD    + +HAQ +   L+ ++ L N++I+ Y K G +  +  VF+ ++ 
Sbjct: 101 FDLLRLSTRYGDPDLARAVHAQFL--KLEEDIFLGNALISAYLKLGLVRDADKVFSGLSC 158

Query: 315 KSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQ 374
            ++VS+TA+ISG+ ++    EA+  F  M     +  +  T V+ILTA       ++  Q
Sbjct: 159 PNVVSYTALISGFSKSDWEDEAVELFFAMLDSGIEP-NEYTFVAILTACIRNMDYQLGSQ 217

Query: 375 LHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
           +HGI  + G      + N L+  Y KCG +DL   +FEEM   RD+ SWNT+I
Sbjct: 218 VHGIVVKLGLLSCVFICNALMGLYCKCGFLDLVLRLFEEMP-ERDITSWNTVI 269


>gi|414879990|tpg|DAA57121.1| TPA: putative NAC domain and pentatricopeptide repeat containing
            protein [Zea mays]
          Length = 1467

 Score =  231 bits (589), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 163/597 (27%), Positives = 280/597 (46%), Gaps = 79/597 (13%)

Query: 17   KSGKIKEAENLFDEIP-EKNVVSWSIVI---HGYSINGFHEKSMKAFSHMMLS-----GL 67
            ++G++ EAE + + +P E NV  W I++     Y      E+++K  S +         +
Sbjct: 761  RAGRLCEAEQIIEGLPMEVNVTVWRILLGCCSKYGEVAMGERAIKMISDLERESGGDFAV 820

Query: 68   LPNSFTMVGVLVAAAGLQNL--------------ELARSIHGLMVKFGL----------- 102
            L N  T +G    A   + L              E  + +H  +V  GL           
Sbjct: 821  LSNVLTELGRFSDAEQARKLLDQRKIVKLQEAVMEAVKKLHAHLVVSGLHNCQYAMSKVI 880

Query: 103  ------ESDL------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNA 150
                  +SDL      F+ +++P     N ++ G   +   + A++ +   +  G+ P+ 
Sbjct: 881  RLYALHQSDLVSAHKVFKQIESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDN 940

Query: 151  VTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFRE 210
            +T   V++ C    +    E +H   IKLG +LD+ V+NS++ +Y+    L  A  +F E
Sbjct: 941  LTFPFVLKACAKTCAPKEGEQMHNHVIKLGFLLDIFVSNSLIYLYAACGALACARSVFNE 1000

Query: 211  MECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGD---- 266
            M  KDV+SW  ++G +       + L +F+ M+   +  D V ++ +IS    LGD    
Sbjct: 1001 MLVKDVVSWNSLIGGYSQHNRLKEVLTLFKLMQAEEVQADKVTMVKVISACTHLGDWSMA 1060

Query: 267  ---LKRGKQLHAQV-------------VLGGLQSELRLS-----------NSIIAMYSKC 299
               ++  +  H +V              +G LQS  ++            N++I  Y+K 
Sbjct: 1061 DCMVRYIEHNHIEVDVYLGNTLIDYYCRIGQLQSAEKVFSQMKDKNTVTLNAMITAYAKG 1120

Query: 300  GDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSI 359
            G+L S++ +F+QI  K L+SW+++I  Y Q     ++L  F +M++ K    D++ + S+
Sbjct: 1121 GNLVSAKKIFDQIPNKDLISWSSMICAYSQASHFSDSLELFRQMQRAKVKP-DAVVIASV 1179

Query: 360  LTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRD 419
            L+A   L AL++   +H             ++N LI  ++KCG V  A  VF +M   +D
Sbjct: 1180 LSACAHLGALDLGKWIHDYVRRNNIKADTIMENSLIDMFAKCGCVQEALQVFTDME-EKD 1238

Query: 420  VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFN 479
             +SWN+II G   NG  + AL ++H M   G  P+  T+L +L AC +  L  +GL  F 
Sbjct: 1239 TLSWNSIILGLANNGFEDEALDIFHSMLTEGPRPNEVTFLGVLIACANRQLVEEGLDHFE 1298

Query: 480  QMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
            +M   + ++P  +HYGCVVD+L+RAG L  A     ++     P +WR LL  C  H
Sbjct: 1299 RMKSVHNLEPQMKHYGCVVDILSRAGQLEKAVSFISEMPLAPDPVVWRILLGACRTH 1355



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 146/568 (25%), Positives = 255/568 (44%), Gaps = 77/568 (13%)

Query: 11   LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
            +++ +   G+++ A  LFD++P +NVVSW+ +I GY+    + +++    HMM  G+ P+
Sbjct: 551  MITGFAGWGEVEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEALTLLRHMMAGGISPS 610

Query: 71   SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-----------------------LF 107
              T++ V+ A + L  + +   ++G   K G+ SD                         
Sbjct: 611  EITVLAVIPAISNLGGILMGEMLNGYCEKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFD 670

Query: 108  EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRA 167
            E L    LVS  +I++GF  + L  +A+ LF   R +G+ PN +T L+VI  C   G   
Sbjct: 671  EMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIKPNRITFLSVINACSHGG--- 727

Query: 168  LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMD-------LDAAIQIFREMECK-DVISW 219
            L E   GL     ++ + +++  +   + C++D       L  A QI   +  + +V  W
Sbjct: 728  LVE--QGLAFFKSMVYEYNIDPEI-KHFGCIIDMLGRAGRLCEAEQIIEGLPMEVNVTVW 784

Query: 220  TRMMGLFVDF------------------EYAGD---------ALKIFREMRKSRIICDTV 252
              ++G    +                  E  GD          L  F +  ++R + D  
Sbjct: 785  RILLGCCSKYGEVAMGERAIKMISDLERESGGDFAVLSNVLTELGRFSDAEQARKLLDQR 844

Query: 253  ALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYS-KCGDLDSSRSVFNQ 311
             ++ L    A++  +K+   LHA +V+ GL +     + +I +Y+    DL S+  VF Q
Sbjct: 845  KIVKL--QEAVMEAVKK---LHAHLVVSGLHNCQYAMSKVIRLYALHQSDLVSAHKVFKQ 899

Query: 312  ITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEI 371
            I   +   W  ++ G  Q+   ++A+  F K  QEK    D++T   +L A  +  A + 
Sbjct: 900  IESPTTFLWNTLLRGLAQSDAPKDAI-VFYKKAQEKGMKPDNLTFPFVLKACAKTCAPKE 958

Query: 372  CLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYG 431
              Q+H    + GF     V N LI  Y+ CG +  A  VF EM  ++DVVSWN++I GY 
Sbjct: 959  GEQMHNHVIKLGFLLDIFVSNSLIYLYAACGALACARSVFNEM-LVKDVVSWNSLIGGYS 1017

Query: 432  VNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTN--DGLVIFNQMIEENKVKP 489
             +   +  L L+  M       D  T + +++AC H G  +  D +V +   IE N ++ 
Sbjct: 1018 QHNRLKEVLTLFKLMQAEEVQADKVTMVKVISACTHLGDWSMADCMVRY---IEHNHIEV 1074

Query: 490  SQEHYGCVVDLLARAGCLSDASGLAGKL 517
                   ++D   R G L  A  +  ++
Sbjct: 1075 DVYLGNTLIDYYCRIGQLQSAEKVFSQM 1102



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 111/406 (27%), Positives = 181/406 (44%), Gaps = 68/406 (16%)

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
            W   +  +    +  +AL +F+  R+  +  DT     ++   A LG  + G QLHA V
Sbjct: 447 PWRAFLKAYSHGPFPLEALHLFKHARQ-HLADDTFVFTFVLKACAGLGWHRAGAQLHALV 505

Query: 278 VLGGLQSELRLSNSIIAMY--SKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
           V  G +    +  ++I +Y  S+C  L  +R VF+++  K++VSW  +I+G+   G    
Sbjct: 506 VQKGFEFHAYVHTALINVYVMSRC--LVEARKVFDEMPVKNVVSWNVMITGFAGWGEVEY 563

Query: 336 ALNQFIKMRQEK----TDSVD--------------------------SITLVSILTASGE 365
           A   F +M        T  +D                           IT+++++ A   
Sbjct: 564 ARLLFDQMPCRNVVSWTGLIDGYTRACLYAEALTLLRHMMAGGISPSEITVLAVIPAISN 623

Query: 366 LAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNT 425
           L  + +   L+G   + G      V N LI  Y+K G+V  +  VF+EM   R++VSW +
Sbjct: 624 LGGILMGEMLNGYCEKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLDRRNLVSWTS 683

Query: 426 IIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEEN 485
           II G+ ++G    AL L+ +M   G  P+  T+LS++NAC H GL   GL  F  M+ E 
Sbjct: 684 IISGFAMHGLSVEALELFAEMRRAGIKPNRITFLSVINACSHGGLVEQGLAFFKSMVYEY 743

Query: 486 KVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGC------------ 533
            + P  +H+GC++D+L RAG L +A  +   L   +   +WR LL  C            
Sbjct: 744 NIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPMEVNVTVWRILLGCCSKYGEVAMGERA 803

Query: 534 ---------------------VLHVGRFQDAEALRSGSQKKGIIKI 558
                                +  +GRF DAE  R    ++ I+K+
Sbjct: 804 IKMISDLERESGGDFAVLSNVLTELGRFSDAEQARKLLDQRKIVKL 849



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 116/543 (21%), Positives = 221/543 (40%), Gaps = 90/543 (16%)

Query: 22  KEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAA 81
           + A  +FD+ P      W   +  YS   F  +++  F H     L  ++F    VL A 
Sbjct: 435 RTALKVFDQSP----APWRAFLKAYSHGPFPLEALHLFKHAR-QHLADDTFVFTFVLKAC 489

Query: 82  AGLQNLELARSIHGLMVKFGLE----------------------SDLFEGLKNPYLVSCN 119
           AGL        +H L+V+ G E                        +F+ +    +VS N
Sbjct: 490 AGLGWHRAGAQLHALVVQKGFEFHAYVHTALINVYVMSRCLVEARKVFDEMPVKNVVSWN 549

Query: 120 AIVAGF-------------------------------INNKLFQQAVLLFNFFRGSGLVP 148
            ++ GF                                   L+ +A+ L       G+ P
Sbjct: 550 VMITGFAGWGEVEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEALTLLRHMMAGGISP 609

Query: 149 NAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIF 208
           + +T+L VI     LG   + E+++G   K G++ D  V NS++D+Y+ +  +  ++++F
Sbjct: 610 SEITVLAVIPAISNLGGILMGEMLNGYCEKKGIMSDARVGNSLIDLYAKIGSVQNSLKVF 669

Query: 209 REM-ECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDL 267
            EM + ++++SWT ++  F     + +AL++F EMR++ I  + +  L++I+  +  G +
Sbjct: 670 DEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIKPNRITFLSVINACSHGGLV 729

Query: 268 KRGKQLHAQVVLG-GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAII- 324
           ++G      +V    +  E++    II M  + G L  +  +   +  E ++  W  ++ 
Sbjct: 730 EQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPMEVNVTVWRILLG 789

Query: 325 --SGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGEL---------------- 366
             S Y +      A+     +  E+    D   L ++LT  G                  
Sbjct: 790 CCSKYGEVAMGERAIKMISDL--ERESGGDFAVLSNVLTELGRFSDAEQARKLLDQRKIV 847

Query: 367 ----AALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL--AYIVFEEMGFLRDV 420
               A +E   +LH     +G    +   + +I  Y+     DL  A+ VF+++      
Sbjct: 848 KLQEAVMEAVKKLHAHLVVSGLHNCQYAMSKVIRLYA-LHQSDLVSAHKVFKQIESPTTF 906

Query: 421 VSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQ 480
           + WNT++ G   +   + A+  Y K  E G  PD+ T+  +L AC       +G  + N 
Sbjct: 907 L-WNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNLTFPFVLKACAKTCAPKEGEQMHNH 965

Query: 481 MIE 483
           +I+
Sbjct: 966 VIK 968



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 91/423 (21%), Positives = 178/423 (42%), Gaps = 68/423 (16%)

Query: 3    IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
            +D + S+ L+  Y   G +  A ++F+E+  K+VVSW+ +I GYS +   ++ +  F  M
Sbjct: 973  LDIFVSNSLIYLYAACGALACARSVFNEMLVKDVVSWNSLIGGYSQHNRLKEVLTLFKLM 1032

Query: 63   MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG------------- 109
                +  +  TMV V+ A   L +  +A  +   +    +E D++ G             
Sbjct: 1033 QAEEVQADKVTMVKVISACTHLGDWSMADCMVRYIEHNHIEVDVYLGNTLIDYYCRIGQL 1092

Query: 110  ---------LKNPYLVSCNAIVAGF---------------INNK---------------- 129
                     +K+   V+ NA++  +               I NK                
Sbjct: 1093 QSAEKVFSQMKDKNTVTLNAMITAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQAS 1152

Query: 130  LFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNN 189
             F  ++ LF   + + + P+AV + +V+  C  LG+  L + IH    +  +  D  + N
Sbjct: 1153 HFSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALDLGKWIHDYVRRNNIKADTIMEN 1212

Query: 190  SVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIIC 249
            S++DM++    +  A+Q+F +ME KD +SW  ++    +  +  +AL IF  M       
Sbjct: 1213 SLIDMFAKCGCVQEALQVFTDMEEKDTLSWNSIILGLANNGFEDEALDIFHSMLTEGPRP 1272

Query: 250  DTVALL-------NLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDL 302
            + V  L       N   V   L   +R K +H       L+ +++    ++ + S+ G L
Sbjct: 1273 NEVTFLGVLIACANRQLVEEGLDHFERMKSVH------NLEPQMKHYGCVVDILSRAGQL 1326

Query: 303  DSSRSVFNQIT-EKSLVSWTAIISGYVQNGCAREALNQFIKMRQ-EKTDSVDSITLVSIL 360
            + + S  +++      V W  ++     +G    A     K+ + +  +S DS+ L +I 
Sbjct: 1327 EKAVSFISEMPLAPDPVVWRILLGACRTHGNVAVAEMATKKLSELDPGNSADSMLLSNIY 1386

Query: 361  TAS 363
             ++
Sbjct: 1387 ASA 1389



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 122/290 (42%), Gaps = 45/290 (15%)

Query: 311 QITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALE 370
           ++ ++S   W A +  Y       EAL+ F   RQ   D  D+     +L A   L    
Sbjct: 439 KVFDQSPAPWRAFLKAYSHGPFPLEALHLFKHARQHLAD--DTFVFTFVLKACAGLGWHR 496

Query: 371 ICLQLHGIAFEAGFPRYRSVQNCLISSY--SKC--------------------------- 401
              QLH +  + GF  +  V   LI+ Y  S+C                           
Sbjct: 497 AGAQLHALVVQKGFEFHAYVHTALINVYVMSRCLVEARKVFDEMPVKNVVSWNVMITGFA 556

Query: 402 --GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
             G V+ A ++F++M   R+VVSW  +I GY        AL L   M   G  P   T L
Sbjct: 557 GWGEVEYARLLFDQMP-CRNVVSWTGLIDGYTRACLYAEALTLLRHMMAGGISPSEITVL 615

Query: 460 SILNACGHAGLTNDGLVIFNQMIE---ENKVKPSQEHYG-CVVDLLARAGCLSDASGLAG 515
           +++ A     ++N G ++  +M+    E K   S    G  ++DL A+ G + ++  +  
Sbjct: 616 AVIPA-----ISNLGGILMGEMLNGYCEKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFD 670

Query: 516 KLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFLN 565
           ++L+      W +++SG  +H G   +A  L +  ++ G IK   I+FL+
Sbjct: 671 EMLDRRNLVSWTSIISGFAMH-GLSVEALELFAEMRRAG-IKPNRITFLS 718


>gi|4544411|gb|AAD22320.1| hypothetical protein [Arabidopsis thaliana]
 gi|91806147|gb|ABE65802.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 582

 Score =  231 bits (589), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 154/528 (29%), Positives = 260/528 (49%), Gaps = 29/528 (5%)

Query: 31  IPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELA 90
           +PE++ V W+ +I GYS NG+   + K F  M+  G  P++ T+V +L        +   
Sbjct: 1   MPERDTVVWNALICGYSRNGYECDAWKLFIVMLQQGFSPSATTLVNLLPFCGQCGFVSQG 60

Query: 91  RSIHGLMVKFGLESD----------------------LFEGLKNPYLVSCNAIVAGFINN 128
           RS+HG+  K GLE D                      LF  +K+   VS N ++  +  +
Sbjct: 61  RSVHGVAAKSGLELDSQVKNALISFYSKCAELGSAEVLFREMKDKSTVSWNTMIGAYSQS 120

Query: 129 KLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVN 188
            L ++A+ +F       +  + VT++ ++   V+       E +H L +K G++ D+SV 
Sbjct: 121 GLQEEAITVFKNMFEKNVEISPVTIINLLSAHVSH------EPLHCLVVKCGMVNDISVV 174

Query: 189 NSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRII 248
            S++  YS    L +A +++   +   ++  T ++  + +      A+  F + R+  + 
Sbjct: 175 TSLVCAYSRCGCLVSAERLYASAKQDSIVGLTSIVSCYAEKGDMDIAVVYFSKTRQLCMK 234

Query: 249 CDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSV 308
            D VAL+ ++        +  G  LH   +  GL ++  + N +I MYSK  D+++   +
Sbjct: 235 IDAVALVGILHGCKKSSHIDIGMSLHGYAIKSGLCTKTLVVNGLITMYSKFDDVETVLFL 294

Query: 309 FNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAA 368
           F Q+ E  L+SW ++ISG VQ+G A  A   F +M        D+IT+ S+L    +L  
Sbjct: 295 FEQLQETPLISWNSVISGCVQSGRASTAFEVFHQMMLTGGLLPDAITIASLLAGCSQLCC 354

Query: 369 LEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIY 428
           L +  +LHG      F     V   LI  Y+KCGN   A  VF+ +       +WN++I 
Sbjct: 355 LNLGKELHGYTLRNNFENENFVCTALIDMYAKCGNEVQAESVFKSIK-APCTATWNSMIS 413

Query: 429 GYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVK 488
           GY ++G    AL+ Y +M E G  PD  T+L +L+AC H G  ++G + F  MI+E  + 
Sbjct: 414 GYSLSGLQHRALSCYLEMREKGLKPDEITFLGVLSACNHGGFVDEGKICFRAMIKEFGIS 473

Query: 489 PSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
           P+ +HY  +V LL RA   ++A  L  K+       +W ALLS C++H
Sbjct: 474 PTLQHYALMVGLLGRACLFTEALYLIWKMDIKPDSAVWGALLSACIIH 521



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 101/383 (26%), Positives = 184/383 (48%), Gaps = 30/383 (7%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D    + L+S Y K  ++  AE LF E+ +K+ VSW+ +I  YS +G  E+++  F +M
Sbjct: 74  LDSQVKNALISFYSKCAELGSAEVLFREMKDKSTVSWNTMIGAYSQSGLQEEAITVFKNM 133

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
               +  +  T++ +L A    + L      H L+VK G+ +D                 
Sbjct: 134 FEKNVEISPVTIINLLSAHVSHEPL------HCLVVKCGMVNDISVVTSLVCAYSRCGCL 187

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                L+   K   +V   +IV+ +        AV+ F+  R   +  +AV ++ ++ GC
Sbjct: 188 VSAERLYASAKQDSIVGLTSIVSCYAEKGDMDIAVVYFSKTRQLCMKIDAVALVGILHGC 247

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
                  +   +HG  IK GL     V N ++ MYS   D++  + +F +++   +ISW 
Sbjct: 248 KKSSHIDIGMSLHGYAIKSGLCTKTLVVNGLITMYSKFDDVETVLFLFEQLQETPLISWN 307

Query: 221 RMMGLFVDFEYAGDALKIFREMR-KSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
            ++   V    A  A ++F +M     ++ D + + +L++  + L  L  GK+LH   + 
Sbjct: 308 SVISGCVQSGRASTAFEVFHQMMLTGGLLPDAITIASLLAGCSQLCCLNLGKELHGYTLR 367

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
              ++E  +  ++I MY+KCG+   + SVF  I      +W ++ISGY  +G    AL+ 
Sbjct: 368 NNFENENFVCTALIDMYAKCGNEVQAESVFKSIKAPCTATWNSMISGYSLSGLQHRALSC 427

Query: 340 FIKMRQEKTDSVDSITLVSILTA 362
           +++MR EK    D IT + +L+A
Sbjct: 428 YLEMR-EKGLKPDEITFLGVLSA 449


>gi|125555425|gb|EAZ01031.1| hypothetical protein OsI_23065 [Oryza sativa Indica Group]
          Length = 671

 Score =  231 bits (589), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 158/562 (28%), Positives = 275/562 (48%), Gaps = 38/562 (6%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y  + LL +Y   G + +A  +FDE+P +NVVSWS++I   S  G    ++  F+ M+  
Sbjct: 38  YLCNNLLLSYQARGHLADARGVFDEMPRRNVVSWSVLIVASSRLGVLGDALSLFAGMLRG 97

Query: 66  GLL--PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
           G    PNSFT+  ++   A  ++      +H   VK G++ D                  
Sbjct: 98  GERDRPNSFTVAALVAGCARAKDAVAGEQVHASAVKLGVDEDESVAGTLVDMYAKCGRVG 157

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNK---LFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                F       ++S  +++A  +N+        A++LF       + P   T   +++
Sbjct: 158 SSWRAFVLTPQRSVLSWTSMIACLVNHGDSGYRDTAIVLFKKMLVLKVWPTNATFSCILK 217

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
                      + +HG  +K+G  +D ++  ++L MY     +D   ++   +   D  S
Sbjct: 218 VFDVPELLPSGKQVHGCLVKMGTEVDPALGTALLAMYGRCGGMDEITRLACRIR-HDAFS 276

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
            T ++  +       +A+++FR+M    +  D  A+ +L+ V + LG L+  K++H   +
Sbjct: 277 RTSLLTAYARNGCNMEAVRVFRDMLMGHMPIDQSAITSLLQVCSSLGQLRVVKEIHCYAL 336

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
               + +  L N+I+ +Y KCGD+ SS  VFN +  K  +SWTA+++ YVQN  ++EAL 
Sbjct: 337 KNFFRLDTLLLNAIVTVYGKCGDIASSEIVFNTLENKDTISWTALLTCYVQNDLSQEALF 396

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
            F +M ++  +S     + S+L A    ++L    Q+H    + G     SV+N L++ Y
Sbjct: 397 FFREMVRKGLES-SIFCITSVLRACSATSSLSCGWQIHSRVVKLGVDDDTSVENALVTMY 455

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
           +KCG V +A  +F      R ++SWN +I  +  +G+   A+ L+  M E    PD  T+
Sbjct: 456 AKCGVVQVALKIFNSTRN-RGIISWNALITSFSQHGNEVAAIQLFDMMQEEMVCPDDYTF 514

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
           + +L++C   GL  +G   F QM  +  ++P  EHY C+VDL ARAG  SDA     K +
Sbjct: 515 VGLLSSCSRMGLVAEGCEYFKQMKTKYNLEPKMEHYTCMVDLFARAGRFSDAM----KFI 570

Query: 519 EGMG--PN--IWRALLSGCVLH 536
           + M   P+  +W ALL+ C +H
Sbjct: 571 DAMPCQPDQLVWEALLASCRVH 592



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 107/489 (21%), Positives = 218/489 (44%), Gaps = 31/489 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVI-----HGYSINGFHEKSMKA 58
           D   +  L+  Y K G++  +   F   P+++V+SW+ +I     HG S  G+ + ++  
Sbjct: 139 DESVAGTLVDMYAKCGRVGSSWRAFVLTPQRSVLSWTSMIACLVNHGDS--GYRDTAIVL 196

Query: 59  FSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------L 106
           F  M++  + P + T   +L      + L   + +HG +VK G E D             
Sbjct: 197 FKKMLVLKVWPTNATFSCILKVFDVPELLPSGKQVHGCLVKMGTEVDPALGTALLAMYGR 256

Query: 107 FEGLKNPYLVSC---------NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
             G+     ++C          +++  +  N    +AV +F       +  +   + +++
Sbjct: 257 CGGMDEITRLACRIRHDAFSRTSLLTAYARNGCNMEAVRVFRDMLMGHMPIDQSAITSLL 316

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
           + C +LG   + + IH   +K    LD  + N+++ +Y    D+ ++  +F  +E KD I
Sbjct: 317 QVCSSLGQLRVVKEIHCYALKNFFRLDTLLLNAIVTVYGKCGDIASSEIVFNTLENKDTI 376

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           SWT ++  +V  + + +AL  FREM +  +      + +++   +    L  G Q+H++V
Sbjct: 377 SWTALLTCYVQNDLSQEALFFFREMVRKGLESSIFCITSVLRACSATSSLSCGWQIHSRV 436

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           V  G+  +  + N+++ MY+KCG +  +  +FN    + ++SW A+I+ + Q+G    A+
Sbjct: 437 VKLGVDDDTSVENALVTMYAKCGVVQVALKIFNSTRNRGIISWNALITSFSQHGNEVAAI 496

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAAL-EICLQLHGIAFEAGFPRYRSVQNCLIS 396
            Q   M QE+    D  T V +L++   +  + E C     +  +           C++ 
Sbjct: 497 -QLFDMMQEEMVCPDDYTFVGLLSSCSRMGLVAEGCEYFKQMKTKYNLEPKMEHYTCMVD 555

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTE-TGEVPDS 455
            +++ G    A    + M    D + W  ++    V+G+ +       K+ E   E P  
Sbjct: 556 LFARAGRFSDAMKFIDAMPCQPDQLVWEALLASCRVHGNLDLGRMAAKKILEIKPEDPSP 615

Query: 456 STYLSILNA 464
              LS ++A
Sbjct: 616 YIILSSIHA 624



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 101/437 (23%), Positives = 192/437 (43%), Gaps = 30/437 (6%)

Query: 74  MVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFEGLK 111
           +  +L+  +G  +    R++HG  VK G  +                       +F+ + 
Sbjct: 5   LAALLLRGSGGHHHSHPRAVHGAAVKLGCLASTYLCNNLLLSYQARGHLADARGVFDEMP 64

Query: 112 NPYLVSCNAIVAGFINNKLFQQAVLLF-NFFRGSGL-VPNAVTMLTVIRGCVALGSRALC 169
              +VS + ++       +   A+ LF    RG     PN+ T+  ++ GC         
Sbjct: 65  RRNVVSWSVLIVASSRLGVLGDALSLFAGMLRGGERDRPNSFTVAALVAGCARAKDAVAG 124

Query: 170 ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV-- 227
           E +H   +KLG+  D SV  +++DMY+    + ++ + F     + V+SWT M+   V  
Sbjct: 125 EQVHASAVKLGVDEDESVAGTLVDMYAKCGRVGSSWRAFVLTPQRSVLSWTSMIACLVNH 184

Query: 228 -DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
            D  Y   A+ +F++M   ++         ++ V  +   L  GKQ+H  +V  G + + 
Sbjct: 185 GDSGYRDTAIVLFKKMLVLKVWPTNATFSCILKVFDVPELLPSGKQVHGCLVKMGTEVDP 244

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            L  +++AMY +CG +D    +  +I   +  S T++++ Y +NGC  EA+  F  M   
Sbjct: 245 ALGTALLAMYGRCGGMDEITRLACRIRHDAF-SRTSLLTAYARNGCNMEAVRVFRDMLMG 303

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
               +D   + S+L     L  L +  ++H  A +  F     + N +++ Y KCG++  
Sbjct: 304 HM-PIDQSAITSLLQVCSSLGQLRVVKEIHCYALKNFFRLDTLLLNAIVTVYGKCGDIAS 362

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           + IVF  +   +D +SW  ++  Y  N   + AL  + +M   G         S+L AC 
Sbjct: 363 SEIVFNTLEN-KDTISWTALLTCYVQNDLSQEALFFFREMVRKGLESSIFCITSVLRACS 421

Query: 467 HAGLTNDGLVIFNQMIE 483
                + G  I +++++
Sbjct: 422 ATSSLSCGWQIHSRVVK 438


>gi|116831059|gb|ABK28484.1| unknown [Arabidopsis thaliana]
          Length = 583

 Score =  231 bits (589), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 154/528 (29%), Positives = 260/528 (49%), Gaps = 29/528 (5%)

Query: 31  IPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELA 90
           +PE++ V W+ +I GYS NG+   + K F  M+  G  P++ T+V +L        +   
Sbjct: 1   MPERDTVVWNALICGYSRNGYECDAWKLFIVMLQQGFSPSATTLVNLLPFCGQCGFVSQG 60

Query: 91  RSIHGLMVKFGLESD----------------------LFEGLKNPYLVSCNAIVAGFINN 128
           RS+HG+  K GLE D                      LF  +K+   VS N ++  +  +
Sbjct: 61  RSVHGVAAKSGLELDSQVKNALISFYSKCAELGSAEVLFREMKDKSTVSWNTMIGAYSQS 120

Query: 129 KLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVN 188
            L ++A+ +F       +  + VT++ ++   V+       E +H L +K G++ D+SV 
Sbjct: 121 GLQEEAITVFKNMFEKNVEISPVTIINLLSAHVSH------EPLHCLVVKCGMVNDISVV 174

Query: 189 NSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRII 248
            S++  YS    L +A +++   +   ++  T ++  + +      A+  F + R+  + 
Sbjct: 175 TSLVCAYSRCGCLVSAERLYASAKQDSIVGLTSIVSCYAEKGDMDIAVVYFSKTRQLCMK 234

Query: 249 CDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSV 308
            D VAL+ ++        +  G  LH   +  GL ++  + N +I MYSK  D+++   +
Sbjct: 235 IDAVALVGILHGCKKSSHIDIGMSLHGYAIKSGLCTKTLVVNGLITMYSKFDDVETVLFL 294

Query: 309 FNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAA 368
           F Q+ E  L+SW ++ISG VQ+G A  A   F +M        D+IT+ S+L    +L  
Sbjct: 295 FEQLQETPLISWNSVISGCVQSGRASTAFEVFHQMMLTGGLLPDAITIASLLAGCSQLCC 354

Query: 369 LEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIY 428
           L +  +LHG      F     V   LI  Y+KCGN   A  VF+ +       +WN++I 
Sbjct: 355 LNLGKELHGYTLRNNFENENFVCTALIDMYAKCGNEVQAESVFKSIK-APCTATWNSMIS 413

Query: 429 GYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVK 488
           GY ++G    AL+ Y +M E G  PD  T+L +L+AC H G  ++G + F  MI+E  + 
Sbjct: 414 GYSLSGLQHRALSCYLEMREKGLKPDEITFLGVLSACNHGGFVDEGKICFRAMIKEFGIS 473

Query: 489 PSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
           P+ +HY  +V LL RA   ++A  L  K+       +W ALLS C++H
Sbjct: 474 PTLQHYALMVGLLGRACLFTEALYLIWKMDIKPDSAVWGALLSACIIH 521



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 101/383 (26%), Positives = 184/383 (48%), Gaps = 30/383 (7%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D    + L+S Y K  ++  AE LF E+ +K+ VSW+ +I  YS +G  E+++  F +M
Sbjct: 74  LDSQVKNALISFYSKCAELGSAEVLFREMKDKSTVSWNTMIGAYSQSGLQEEAITVFKNM 133

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
               +  +  T++ +L A    + L      H L+VK G+ +D                 
Sbjct: 134 FEKNVEISPVTIINLLSAHVSHEPL------HCLVVKCGMVNDISVVTSLVCAYSRCGCL 187

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                L+   K   +V   +IV+ +        AV+ F+  R   +  +AV ++ ++ GC
Sbjct: 188 VSAERLYASAKQDSIVGLTSIVSCYAEKGDMDIAVVYFSKTRQLCMKIDAVALVGILHGC 247

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
                  +   +HG  IK GL     V N ++ MYS   D++  + +F +++   +ISW 
Sbjct: 248 KKSSHIDIGMSLHGYAIKSGLCTKTLVVNGLITMYSKFDDVETVLFLFEQLQETPLISWN 307

Query: 221 RMMGLFVDFEYAGDALKIFREMR-KSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
            ++   V    A  A ++F +M     ++ D + + +L++  + L  L  GK+LH   + 
Sbjct: 308 SVISGCVQSGRASTAFEVFHQMMLTGGLLPDAITIASLLAGCSQLCCLNLGKELHGYTLR 367

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
              ++E  +  ++I MY+KCG+   + SVF  I      +W ++ISGY  +G    AL+ 
Sbjct: 368 NNFENENFVCTALIDMYAKCGNEVQAESVFKSIKAPCTATWNSMISGYSLSGLQHRALSC 427

Query: 340 FIKMRQEKTDSVDSITLVSILTA 362
           +++MR EK    D IT + +L+A
Sbjct: 428 YLEMR-EKGLKPDEITFLGVLSA 449


>gi|225433177|ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130 [Vitis vinifera]
 gi|296083673|emb|CBI23662.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  231 bits (588), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 139/447 (31%), Positives = 238/447 (53%), Gaps = 4/447 (0%)

Query: 92  SIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAV 151
            ++G   +  L   +F+ +    +VS  A++ G++     + ++ L      SG+ PN  
Sbjct: 47  DMYGKCSRVDLACSVFDRMLERNVVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPNEF 106

Query: 152 TMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM 211
           T  T ++ C ALG       IHG+ +K G      V N+ +DMYS    +  A Q+F +M
Sbjct: 107 TFSTSLKACGALGVVENGMQIHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKM 166

Query: 212 ECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGK 271
             ++++SW  M+           +L +F+ M+    + D     + +     LG ++ G 
Sbjct: 167 PFRNLVSWNAMIAGHTHEGNGRKSLVLFQRMQGQGEVPDEFTFTSTLKACGALGAIRGGT 226

Query: 272 QLHAQVVLGGLQSELR--LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQ 329
           Q+HA ++  G    +R  ++++I+ +Y+KCG L  ++ VF++I +K+L+SW+A+I G+ Q
Sbjct: 227 QIHASLITRGFPISIRNIIASAIVDLYAKCGYLFEAQKVFDRIEQKNLISWSALIQGFAQ 286

Query: 330 NGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS 389
            G   EA++ F ++R E   +VD   L  ++    +LA +E   Q+H    +       S
Sbjct: 287 EGNLLEAMDLFRQLR-ESVSNVDGFVLSIMMGVFADLALVEQGKQMHCYILKVPSGLDIS 345

Query: 390 VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
           V N +I  Y KCG  + A  +F EM  +R+VVSW  +I GYG +G GE A+ L+++M   
Sbjct: 346 VANSIIDMYLKCGLTEEAERLFSEMQ-VRNVVSWTVMITGYGKHGLGEKAIHLFNRMQLD 404

Query: 450 GEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSD 509
           G   D   YL++L+AC H+GL  +    F+++   +++KP+ EHY C+VD+L RAG L +
Sbjct: 405 GIELDEVAYLALLSACSHSGLIRESQEYFSRLCNNHQMKPNIEHYACMVDILGRAGQLKE 464

Query: 510 ASGLAGKLLEGMGPNIWRALLSGCVLH 536
           A  L   +       IW+ LLS C +H
Sbjct: 465 AKNLIENMKLKPNEGIWQTLLSACRVH 491



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 110/388 (28%), Positives = 201/388 (51%), Gaps = 26/388 (6%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
            D   ++ L+  Y K  ++  A ++FD + E+NVVSW+ ++ GY   G  + S+     M
Sbjct: 37  FDLIMNNDLIDMYGKCSRVDLACSVFDRMLERNVVSWTALMCGYLQEGNAKGSLALLCEM 96

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE------------------- 103
             SG+ PN FT    L A   L  +E    IHG+ VK G E                   
Sbjct: 97  GYSGVKPNEFTFSTSLKACGALGVVENGMQIHGMCVKSGFEWVSVVGNATIDMYSKCGRI 156

Query: 104 ---SDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +F  +    LVS NA++AG  +    +++++LF   +G G VP+  T  + ++ C
Sbjct: 157 GMAEQVFNKMPFRNLVSWNAMIAGHTHEGNGRKSLVLFQRMQGQGEVPDEFTFTSTLKAC 216

Query: 161 VALGSRALCELIHGLTIKLGLILDVS--VNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            ALG+      IH   I  G  + +   + ++++D+Y+    L  A ++F  +E K++IS
Sbjct: 217 GALGAIRGGTQIHASLITRGFPISIRNIIASAIVDLYAKCGYLFEAQKVFDRIEQKNLIS 276

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           W+ ++  F       +A+ +FR++R+S    D   L  ++ V A L  +++GKQ+H  ++
Sbjct: 277 WSALIQGFAQEGNLLEAMDLFRQLRESVSNVDGFVLSIMMGVFADLALVEQGKQMHCYIL 336

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
                 ++ ++NSII MY KCG  + +  +F+++  +++VSWT +I+GY ++G   +A++
Sbjct: 337 KVPSGLDISVANSIIDMYLKCGLTEEAERLFSEMQVRNVVSWTVMITGYGKHGLGEKAIH 396

Query: 339 QFIKMRQE--KTDSVDSITLVSILTASG 364
            F +M+ +  + D V  + L+S  + SG
Sbjct: 397 LFNRMQLDGIELDEVAYLALLSACSHSG 424



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/269 (34%), Positives = 143/269 (53%), Gaps = 4/269 (1%)

Query: 265 GDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAII 324
           G   +G Q+HA  V  G   +L ++N +I MY KC  +D + SVF+++ E+++VSWTA++
Sbjct: 18  GLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRMLERNVVSWTALM 77

Query: 325 SGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGF 384
            GY+Q G A+ +L    +M        +  T  + L A G L  +E  +Q+HG+  ++GF
Sbjct: 78  CGYLQEGNAKGSLALLCEMGYSGVKP-NEFTFSTSLKACGALGVVENGMQIHGMCVKSGF 136

Query: 385 PRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH 444
                V N  I  YSKCG + +A  VF +M F R++VSWN +I G+   G+G  +L L+ 
Sbjct: 137 EWVSVVGNATIDMYSKCGRIGMAEQVFNKMPF-RNLVSWNAMIAGHTHEGNGRKSLVLFQ 195

Query: 445 KMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEEN-KVKPSQEHYGCVVDLLAR 503
           +M   GEVPD  T+ S L ACG  G    G  I   +I     +         +VDL A+
Sbjct: 196 RMQGQGEVPDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPISIRNIIASAIVDLYAK 255

Query: 504 AGCLSDASGLAGKLLEGMGPNIWRALLSG 532
            G L +A  +  + +E      W AL+ G
Sbjct: 256 CGYLFEAQKVFDR-IEQKNLISWSALIQG 283



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 147/282 (52%), Gaps = 8/282 (2%)

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           +H   + +G   D+ +NN ++DMY     +D A  +F  M  ++V+SWT +M  ++    
Sbjct: 26  VHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRMLERNVVSWTALMCGYLQEGN 85

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
           A  +L +  EM  S +  +       +     LG ++ G Q+H   V  G +    + N+
Sbjct: 86  AKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVVENGMQIHGMCVKSGFEWVSVVGNA 145

Query: 292 IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
            I MYSKCG +  +  VFN++  ++LVSW A+I+G+   G  R++L  F +M Q + +  
Sbjct: 146 TIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHTHEGNGRKSLVLFQRM-QGQGEVP 204

Query: 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS----YSKCGNVDLA 407
           D  T  S L A G L A+    Q+H      GFP   S++N + S+    Y+KCG +  A
Sbjct: 205 DEFTFTSTLKACGALGAIRGGTQIHASLITRGFP--ISIRNIIASAIVDLYAKCGYLFEA 262

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
             VF+ +   ++++SW+ +I G+   G+   A+ L+ ++ E+
Sbjct: 263 QKVFDRIE-QKNLISWSALIQGFAQEGNLLEAMDLFRQLRES 303


>gi|33146592|dbj|BAC79788.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 749

 Score =  231 bits (588), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 144/432 (33%), Positives = 235/432 (54%), Gaps = 3/432 (0%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           LF+ +     V+ N ++ G   +     AV  F     +G+ P A ++ +V+  CV L  
Sbjct: 116 LFDQMPARTAVTWNTLIHGHARSAAPGLAVAAFARMARAGVSPTASSVSSVLVACVRLED 175

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
            A    +H + +  G    V V  +++DMY+    L AA Q+FREME K+V ++T ++  
Sbjct: 176 AAAGATLHSVGLMHGFCASVVVGTALVDMYAKCHHLGAAQQVFREMEEKNVATFTALVAG 235

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           FV      DA+ + REM +S +  + +   +L+S  A   D+  GKQ+H  V+  GL+ +
Sbjct: 236 FVLSRRPHDAMLLVREMERSGVAPNLMTYSSLLSSFASPEDIDHGKQVHCAVLKKGLEHD 295

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
             + ++++ MYSKCG L++   V   ++ +  VS+ ++ISG    G  +EA   F++MR+
Sbjct: 296 QFVLSALVTMYSKCGILENFVKVQMSVSCQDQVSFNSVISGLSCLGRGKEAFQHFLEMRR 355

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
             TD +D  T  S+L A G  ++L    Q+H +  + G+     VQN LIS Y++ G + 
Sbjct: 356 HGTD-MDVFTFASVLKAIGSSSSLLEGRQVHTLILKIGYDSVVDVQNSLISMYARHGAIG 414

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            +  VF  M    ++VSWN+++ G   +GHG+  + ++ +M      PD  T+LS+L AC
Sbjct: 415 ESNGVFISME-APNLVSWNSLMSGCAQHGHGKEVVEMFEQMRRLHVQPDHITFLSVLTAC 473

Query: 466 GHAGLTNDGLVIFNQMIEENK-VKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
            H GL + GL  FN M ++   V    EHY C+VDLL RAG L++A  L   +    G +
Sbjct: 474 SHVGLVDKGLEYFNLMKDKGYLVGARTEHYACMVDLLGRAGYLNEAEYLINGMPIKPGAS 533

Query: 525 IWRALLSGCVLH 536
           ++RALLS C +H
Sbjct: 534 VYRALLSACQIH 545



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 116/502 (23%), Positives = 237/502 (47%), Gaps = 26/502 (5%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           + ++ LL+ Y +S ++ EA++LFD++P +  V+W+ +IHG++ +     ++ AF+ M  +
Sbjct: 95  FATTALLAFYCRSRRLPEAQHLFDQMPARTAVTWNTLIHGHARSAAPGLAVAAFARMARA 154

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIH--GLMVKF--------------------GLE 103
           G+ P + ++  VLVA   L++     ++H  GLM  F                    G  
Sbjct: 155 GVSPTASSVSSVLVACVRLEDAAAGATLHSVGLMHGFCASVVVGTALVDMYAKCHHLGAA 214

Query: 104 SDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
             +F  ++   + +  A+VAGF+ ++    A+LL      SG+ PN +T  +++    + 
Sbjct: 215 QQVFREMEEKNVATFTALVAGFVLSRRPHDAMLLVREMERSGVAPNLMTYSSLLSSFASP 274

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
                 + +H   +K GL  D  V ++++ MYS    L+  +++   + C+D +S+  ++
Sbjct: 275 EDIDHGKQVHCAVLKKGLEHDQFVLSALVTMYSKCGILENFVKVQMSVSCQDQVSFNSVI 334

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
                     +A + F EMR+     D     +++        L  G+Q+H  ++  G  
Sbjct: 335 SGLSCLGRGKEAFQHFLEMRRHGTDMDVFTFASVLKAIGSSSSLLEGRQVHTLILKIGYD 394

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
           S + + NS+I+MY++ G +  S  VF  +   +LVSW +++SG  Q+G  +E +  F +M
Sbjct: 395 SVVDVQNSLISMYARHGAIGESNGVFISMEAPNLVSWNSLMSGCAQHGHGKEVVEMFEQM 454

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN--CLISSYSKC 401
           R+      D IT +S+LTA   +  ++  L+   +  + G+      ++  C++    + 
Sbjct: 455 RRLHVQP-DHITFLSVLTACSHVGLVDKGLEYFNLMKDKGYLVGARTEHYACMVDLLGRA 513

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G ++ A  +   M        +  ++    ++G+ E  + +  ++ E     DSS ++ +
Sbjct: 514 GYLNEAEYLINGMPIKPGASVYRALLSACQIHGNLEIVIRVSKRLIELNP-HDSSVHVQL 572

Query: 462 LNACGHAGLTNDGLVIFNQMIE 483
            NA    G   +   I   M E
Sbjct: 573 SNAFAGDGRWGNAAEIREAMSE 594



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 83/371 (22%), Positives = 176/371 (47%), Gaps = 27/371 (7%)

Query: 178 KLGLIL-DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDAL 236
           KLG +  ++    ++L  Y     L  A  +F +M  +  ++W  ++         G A+
Sbjct: 86  KLGFLASNLFATTALLAFYCRSRRLPEAQHLFDQMPARTAVTWNTLIHGHARSAAPGLAV 145

Query: 237 KIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMY 296
             F  M ++ +     ++ +++     L D   G  LH+  ++ G  + + +  +++ MY
Sbjct: 146 AAFARMARAGVSPTASSVSSVLVACVRLEDAAAGATLHSVGLMHGFCASVVVGTALVDMY 205

Query: 297 SKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV--DSI 354
           +KC  L +++ VF ++ EK++ ++TA+++G+V    +R   +  + +R+ +   V  + +
Sbjct: 206 AKCHHLGAAQQVFREMEEKNVATFTALVAGFV---LSRRPHDAMLLVREMERSGVAPNLM 262

Query: 355 TLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM 414
           T  S+L++      ++   Q+H    + G    + V + L++ YSKCG ++  ++  +  
Sbjct: 263 TYSSLLSSFASPEDIDHGKQVHCAVLKKGLEHDQFVLSALVTMYSKCGILE-NFVKVQMS 321

Query: 415 GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDG 474
              +D VS+N++I G    G G+ A   + +M   G   D  T+ S+L A G +    +G
Sbjct: 322 VSCQDQVSFNSVISGLSCLGRGKEAFQHFLEMRRHGTDMDVFTFASVLKAIGSSSSLLEG 381

Query: 475 LVIFNQMIEENKVKPSQEHYGCVVD-------LLARAGCLSDASGLAGKLLEGMGPNI-- 525
             +   +++          Y  VVD       + AR G + +++G+    +    PN+  
Sbjct: 382 RQVHTLILKIG--------YDSVVDVQNSLISMYARHGAIGESNGV---FISMEAPNLVS 430

Query: 526 WRALLSGCVLH 536
           W +L+SGC  H
Sbjct: 431 WNSLMSGCAQH 441


>gi|449460648|ref|XP_004148057.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g50420-like [Cucumis sativus]
          Length = 696

 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 165/574 (28%), Positives = 285/574 (49%), Gaps = 35/574 (6%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEK-SMKAFSH 61
           + PY  + +LS Y + G I E++ +F+++P++N+VS++ +I  YS +  H   +    S 
Sbjct: 40  LSPYVCNNILSMYARCGAIWESQKVFEKMPQRNLVSFNALIAAYSRSHGHAPLAFNLLSQ 99

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL--------------- 106
           M L  L PNSFT+  +L AA+  ++   +  IH  +VK G   D+               
Sbjct: 100 MELEFLKPNSFTITSLLQAASFTEDPFWSSLIHAQVVKCGFVHDVRVQTALIGTYSHCLD 159

Query: 107 -------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                  F    +  +V+ N ++ G + +    +A+ LFN   G GL+P   T   ++  
Sbjct: 160 LESAGKVFRWTIDKDVVTWNTMIFGNLKHDKLNEALRLFNQMLGIGLIPTQFTYAMILNI 219

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C   G      LIHG  I    I+D ++ N +LD+Y    D+  A  IF   E  D+++W
Sbjct: 220 CCRNGDYLFGRLIHGRIITSNAIIDRTLQNVLLDLYCNCGDIHTAFCIFNRNENPDLVAW 279

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRII-CDTVALLNLISVNAILGDLKRGKQLHAQVV 278
             ++    + E    A+K+F++++KS +   D      +IS    + +L  G    AQV+
Sbjct: 280 NTIISGCSENEEDEKAMKLFQQLKKSSLTKPDDYTYAAVIST---IDNLLSGMSFIAQVI 336

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
             G +  + +S+ I++M  + G+  ++  VF  +  K +V WT +ISGY + G   +A+ 
Sbjct: 337 KDGFEGSVFISSVIVSMLFRNGESQAAARVFVTVAVKDVVLWTEMISGYSRIGEGEKAIK 396

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
            F +M Q   +       +++ + + +LA L+     H +A + G      V   LI+ Y
Sbjct: 397 CFHQMHQNGHELDSFSLSLALSSCA-DLATLKQGEIFHSLAIKTGSEAEIYVLGSLINMY 455

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
           +K G++  A ++F ++    D+  WN+++ GY  +G+ E AL L+  +   G  PD  T+
Sbjct: 456 AKNGDLGSAQLIFSQVP-CPDLKCWNSMLGGYSHHGNMEQALNLFFNLQNNGVKPDQVTF 514

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK-L 517
           LS+L+AC H+     G  ++N M E N + P+ +HY C+V LL+ AG + +A  +  K  
Sbjct: 515 LSLLSACNHSNSVEIGQFLWNYMKECN-IIPNSKHYSCMVSLLSGAGFMDEAEEMITKSP 573

Query: 518 LEGMGPNIWRALLSGCV----LHVGRFQDAEALR 547
                P +WR LLS CV    L VG     + LR
Sbjct: 574 FANNDPELWRTLLSSCVVKKNLRVGVNAAKQVLR 607



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 118/472 (25%), Positives = 218/472 (46%), Gaps = 31/472 (6%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRG---SGLVPNAVTMLTVIRGCVA 162
           +FE +    LVS NA++A +  ++    A L FN         L PN+ T+ ++++    
Sbjct: 64  VFEKMPQRNLVSFNALIAAY--SRSHGHAPLAFNLLSQMELEFLKPNSFTITSLLQAASF 121

Query: 163 LGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
                   LIH   +K G + DV V  +++  YS  +DL++A ++FR    KDV++W  M
Sbjct: 122 TEDPFWSSLIHAQVVKCGFVHDVRVQTALIGTYSHCLDLESAGKVFRWTIDKDVVTWNTM 181

Query: 223 MGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL 282
           +   +  +   +AL++F +M    +I        ++++    GD   G+ +H +++    
Sbjct: 182 IFGNLKHDKLNEALRLFNQMLGIGLIPTQFTYAMILNICCRNGDYLFGRLIHGRIITSNA 241

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
             +  L N ++ +Y  CGD+ ++  +FN+     LV+W  IISG  +N    +A+  F +
Sbjct: 242 IIDRTLQNVLLDLYCNCGDIHTAFCIFNRNENPDLVAWNTIISGCSENEEDEKAMKLFQQ 301

Query: 343 MRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEA-----GFPRYRSVQNCLISS 397
           +++      D  T  ++++    L        L G++F A     GF     + + ++S 
Sbjct: 302 LKKSSLTKPDDYTYAAVISTIDNL--------LSGMSFIAQVIKDGFEGSVFISSVIVSM 353

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
             + G    A  VF  +  ++DVV W  +I GY   G GE A+  +H+M + G   DS +
Sbjct: 354 LFRNGESQAAARVFVTVA-VKDVVLWTEMISGYSRIGEGEKAIKCFHQMHQNGHELDSFS 412

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY--GCVVDLLARAGCLSDASGLAG 515
               L++C        G +  +  I   K     E Y  G ++++ A+ G L  A  +  
Sbjct: 413 LSLALSSCADLATLKQGEIFHSLAI---KTGSEAEIYVLGSLINMYAKNGDLGSAQLIFS 469

Query: 516 KLLEGMGPNI--WRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFLN 565
           ++     P++  W ++L G   H G  + A  L    Q  G +K   ++FL+
Sbjct: 470 QV---PCPDLKCWNSMLGG-YSHHGNMEQALNLFFNLQNNG-VKPDQVTFLS 516



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 85/379 (22%), Positives = 159/379 (41%), Gaps = 68/379 (17%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           SS ++S  F++G+ + A  +F  +  K+VV W+ +I GYS  G  EK++K F  M  +G 
Sbjct: 347 SSVIVSMLFRNGESQAAARVFVTVAVKDVVLWTEMISGYSRIGEGEKAIKCFHQMHQNGH 406

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
             +SF++   L + A L  L+     H L +K G E++                      
Sbjct: 407 ELDSFSLSLALSSCADLATLKQGEIFHSLAIKTGSEAEIYVLGSLINMYAKNGDLGSAQL 466

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F  +  P L   N+++ G+ ++   +QA+ LF   + +G+ P+ VT L+++  C    S
Sbjct: 467 IFSQVPCPDLKCWNSMLGGYSHHGNMEQALNLFFNLQNNGVKPDQVTFLSLLSACNHSNS 526

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
             + + +     +  +I +          YSC++ L +      E E            +
Sbjct: 527 VEIGQFLWNYMKECNIIPNSK-------HYSCMVSLLSGAGFMDEAE-----------EM 568

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
                +A +  +++R +  S ++   +     + VNA    L+   +  A  +L      
Sbjct: 569 ITKSPFANNDPELWRTLLSSCVVKKNLR----VGVNAAKQVLRIDPEDSAAHIL------ 618

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSL-----VSW-------TAIISGYVQNGCA 333
             LSN    +Y+  G  D    +  +I EK +     VSW        +  SG   +   
Sbjct: 619 --LSN----LYAAAGKWDGVVEMRRRIREKMVGKDPGVSWIEAKSKIQSFSSGLQSHPEV 672

Query: 334 REALNQFIKMRQEKTDSVD 352
            EAL   +K+R   ++ +D
Sbjct: 673 DEALTTLLKLRGNMSEEMD 691


>gi|223635620|sp|O49680.2|PP324_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g19220, mitochondrial; Flags: Precursor
          Length = 951

 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 157/555 (28%), Positives = 274/555 (49%), Gaps = 34/555 (6%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM-LSGLLP 69
           ++S Y K G  + AE +F+E+  ++V+S + +++G++ NG  E++    + M  +  + P
Sbjct: 332 IISMYSKCGDTEAAETVFEELVCRDVISSNAILNGFAANGMFEEAFGILNQMQSVDKIQP 391

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-----------------------L 106
           +  T+V +      L      R++HG  V+  ++S                        L
Sbjct: 392 DIATVVSITSICGDLSFSREGRAVHGYTVRMEMQSRALEVINSVIDMYGKCGLTTQAELL 451

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFN--FFRGSGLVPNAVTMLTVIRGCVALG 164
           F+   +  LVS N++++ F  N    +A  LF       S    +  T+L ++  C +  
Sbjct: 452 FKTTTHRDLVSWNSMISAFSQNGFTHKAKNLFKEVVSEYSCSKFSLSTVLAILTSCDSSD 511

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM-ECKDVISWTRMM 223
           S    + +H    KLG   ++   NSV++MY    DL +A      M E +D+ SW  ++
Sbjct: 512 SLIFGKSVHCWLQKLGFGDNMLSANSVINMYIGCRDLTSAFLRLETMSETRDLTSWNSVI 571

Query: 224 GLFVDFEYAGDALKIFREM-RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL 282
                  +  ++L+ F+ M R+ +I  D + LL  IS +  LG + +G+  H   +    
Sbjct: 572 SGCASSGHHLESLRAFQAMSREGKIRHDLITLLGTISASGNLGLVLQGRCFHGLAIKSLR 631

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
           + + +L N++I MY +C D++S+  VF  I++ +L SW  +IS   QN   RE    F  
Sbjct: 632 ELDTQLQNTLITMYGRCKDIESAVKVFGLISDPNLCSWNCVISALSQNKAGREVFQLFRN 691

Query: 343 MRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
           ++ E  +    IT V +L+AS +L +    +Q H      GF     V   L+  YS CG
Sbjct: 692 LKLEPNE----ITFVGLLSASTQLGSTSYGMQAHCHLIRRGFQANPFVSAALVDMYSSCG 747

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV-PDSSTYLSI 461
            ++    VF   G +  + +WN++I  +G +G GE A+ L+ +++   E+ P+ S+++S+
Sbjct: 748 MLETGMKVFRNSG-VNSISAWNSVISAHGFHGMGEKAMELFKELSSNSEMEPNKSSFISL 806

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L+AC H+G  ++GL  + QM E+  VKP  EH   +VD+L RAG L +A      + E  
Sbjct: 807 LSACSHSGFIDEGLSYYKQMEEKFGVKPVTEHRVWIVDMLGRAGKLREAYEFITGIGEPQ 866

Query: 522 GPNIWRALLSGCVLH 536
              +W ALLS C  H
Sbjct: 867 KAGVWGALLSACNYH 881



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 136/495 (27%), Positives = 223/495 (45%), Gaps = 60/495 (12%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEA----ENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMK 57
           C + Y S +    +F S  +        NLFDE+PE+                   ++M+
Sbjct: 42  CSNYYFSKRKHKRHFTSSVLSPVTPIVHNLFDELPERE-----------------NRTME 84

Query: 58  AFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------- 106
           + S M L  +L  SF M             E  RS+H   +K GL  DL           
Sbjct: 85  S-SFMFLRDVL-RSFMM---------RTETETPRSVHCFALKCGLLQDLATSSKLLTFYG 133

Query: 107 -----------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLT 155
                      F+ LK   ++  N+++     N  +  AV LF      G   ++ T+L 
Sbjct: 134 RTGELVSSSCLFDELKEKDVIVWNSMITALNQNGRYIAAVGLFIEMIHKGNEFDSTTLLL 193

Query: 156 VIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKD 215
                 +L     C ++H L I+ GL+ D S+ N+++++Y+   +L +A  +F  ME +D
Sbjct: 194 AASALSSLHLSRKCSMLHCLAIETGLVGDSSLCNALMNLYAKGENLSSAECVFTHMEHRD 253

Query: 216 VISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
           ++SW  +M   +   +   +L+ F+ M  S    DTV    +IS  + + +L  G+ LH 
Sbjct: 254 IVSWNTIMTKCLANGHPRKSLQYFKSMTGSGQEADTVTFSCVISACSSIEELTLGESLHG 313

Query: 276 QVVLGGLQSELRLS--NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA 333
            V+  G   E  +S  NSII+MYSKCGD +++ +VF ++  + ++S  AI++G+  NG  
Sbjct: 314 LVIKSGYSPEAHVSVGNSIISMYSKCGDTEAAETVFEELVCRDVISSNAILNGFAANGMF 373

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGF-PRYRSVQN 392
            EA     +M+       D  T+VSI +  G+L+       +HG         R   V N
Sbjct: 374 EEAFGILNQMQSVDKIQPDIATVVSITSICGDLSFSREGRAVHGYTVRMEMQSRALEVIN 433

Query: 393 CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV 452
            +I  Y KCG    A ++F+     RD+VSWN++I  +  NG    A  L+ ++      
Sbjct: 434 SVIDMYGKCGLTTQAELLFKTTTH-RDLVSWNSMISAFSQNGFTHKAKNLFKEVVSEYSC 492

Query: 453 PDS--STYLSILNAC 465
                ST L+IL +C
Sbjct: 493 SKFSLSTVLAILTSC 507


>gi|302820681|ref|XP_002992007.1| hypothetical protein SELMODRAFT_134551 [Selaginella moellendorffii]
 gi|300140249|gb|EFJ06975.1| hypothetical protein SELMODRAFT_134551 [Selaginella moellendorffii]
          Length = 947

 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 159/558 (28%), Positives = 270/558 (48%), Gaps = 32/558 (5%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPE-KNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           + L++ Y K   +  A+ +F  + E KN +SWS ++  Y+ N    ++MK F HM L GL
Sbjct: 368 NSLVNMYGKCHSLGNAKEVFWSMEERKNEISWSSLVAAYAQNNQATEAMKLFQHMDLEGL 427

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL--------------------- 106
            P+  T++ VL A   L+  + +  IH  +++ GLE D+                     
Sbjct: 428 KPDRVTLISVLDACGDLRASKQSSQIHARVLEAGLERDVVVANALTALLNMYARCHSLED 487

Query: 107 ----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSG---LVPNAVTMLTVIRG 159
               F G+     +  N+++A +  +   ++A+ +F      G   + PN VT ++ I  
Sbjct: 488 ARKVFAGMCRKDAICWNSLLAAYAQSGSGKEALQIFREMDLEGCKSMKPNDVTFVSTIDA 547

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIF-REMECKDVIS 218
           C      A   + H    ++G+  +V V NS++ MY     L+ A+ +F R +  +D++S
Sbjct: 548 CANSMDLASGIVFHRRAAEVGMDSNVVVANSLIKMYGKCKRLEEAMSVFNRILGIRDLVS 607

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           W  ++  F        AL+ +  M +  +  D +  ++++   A LG +  G+++H Q  
Sbjct: 608 WNALISAFAQNGDGRRALETYWAMIREGVRPDRITFISVLDACATLGSIAEGREIHRQAS 667

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
            GG +S   +  +++ MY +CG+   +   F ++ ++  ++W A+ +   Q G  R AL 
Sbjct: 668 EGGFESVDAVLGTLVNMYGRCGNAMEAELAFGKLQQRDAIAWNAVAAAITQTGDQRRALG 727

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
               M  E     D++T +++L    +  AL      H  A E GF     + N L++ Y
Sbjct: 728 ILRGMDNEGVKP-DNVTFITLLDTCADCNALVEGKIFHARAMELGFGFDIILGNALLNMY 786

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
            KCG++  A  VF  M  +R+ VSWNT+I  Y  NGH + A+ L+  M   G VP+  ++
Sbjct: 787 GKCGSLREANRVFAAMP-VRNSVSWNTLIVAYAQNGHVKLAIGLFRDMDLEGIVPNQVSF 845

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
           LSI  AC HAG+  +G   F  M+ ++ + P+ EHYGC VDLL R G L+DA  L   + 
Sbjct: 846 LSIFFACSHAGMLEEGSKYFQYMVADHGLVPTPEHYGCFVDLLGRTGRLADAEELVTGMA 905

Query: 519 EGMGPNIWRALLSGCVLH 536
           E      W  LL    L 
Sbjct: 906 EDARSLDWLILLGSSTLQ 923



 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 153/535 (28%), Positives = 256/535 (47%), Gaps = 30/535 (5%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+S Y +  ++ +A ++FDEI  K++VSW+ +I  +  NG  +++M  F  M   G+ P 
Sbjct: 169 LVSLYGRCCEVDQARSVFDEICNKDLVSWTAMISAFVQNGHPDRAMVCFWSMQADGVKPC 228

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFE 108
             T + +L A    ++  +   IH  +++ GLE D                       FE
Sbjct: 229 RVTFITILEAVMETRDARVCEEIHLQIIETGLEKDDKLLNLLVRSYGKCGDMEKMKESFE 288

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            L    +VS +  +A F  N  F +A+         G+  N VT ++++   V       
Sbjct: 289 KLDEKNVVSWSGTIAAFSQNGYFWEAIRQLQKMDLEGVQANEVTFVSILDASV-WEEIEE 347

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM-ECKDVISWTRMMGLFV 227
            E +    I+ G   +V+V NS+++MY     L  A ++F  M E K+ ISW+ ++  + 
Sbjct: 348 GEFLRSRIIESGYGSNVAVCNSLVNMYGKCHSLGNAKEVFWSMEERKNEISWSSLVAAYA 407

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
               A +A+K+F+ M    +  D V L++++     L   K+  Q+HA+V+  GL+ ++ 
Sbjct: 408 QNNQATEAMKLFQHMDLEGLKPDRVTLISVLDACGDLRASKQSSQIHARVLEAGLERDVV 467

Query: 288 LSNSIIA---MYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           ++N++ A   MY++C  L+ +R VF  +  K  + W ++++ Y Q+G  +EAL  F +M 
Sbjct: 468 VANALTALLNMYARCHSLEDARKVFAGMCRKDAICWNSLLAAYAQSGSGKEALQIFREMD 527

Query: 345 QEKTDSV--DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
            E   S+  + +T VS + A      L   +  H  A E G      V N LI  Y KC 
Sbjct: 528 LEGCKSMKPNDVTFVSTIDACANSMDLASGIVFHRRAAEVGMDSNVVVANSLIKMYGKCK 587

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
            ++ A  VF  +  +RD+VSWN +I  +  NG G  AL  Y  M   G  PD  T++S+L
Sbjct: 588 RLEEAMSVFNRILGIRDLVSWNALISAFAQNGDGRRALETYWAMIREGVRPDRITFISVL 647

Query: 463 NACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL 517
           +AC   G   +G  I  Q   E   +      G +V++  R G   +A    GKL
Sbjct: 648 DACATLGSIAEGREIHRQA-SEGGFESVDAVLGTLVNMYGRCGNAMEAELAFGKL 701



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 131/502 (26%), Positives = 254/502 (50%), Gaps = 34/502 (6%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L++ Y K G ++EA  + D + + NV SW+I++  Y+ NG  + +++ F  M L G+  N
Sbjct: 70  LINMYGKCGALEEARKILDRMEDSNVFSWTIMLAAYAQNGHLDDALECFWKMELEGVRAN 129

Query: 71  SFTMV----------------------GVLVAAAGLQNLELARSIHGLMVKFGLESDLFE 108
             T++                      G L     +QN  +  S++G   +      +F+
Sbjct: 130 RVTIISALGCCKSFSRGQWFHSRIKQEGFLPDDVMIQNALV--SLYGRCCEVDQARSVFD 187

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            + N  LVS  A+++ F+ N    +A++ F   +  G+ P  VT +T++   +      +
Sbjct: 188 EICNKDLVSWTAMISAFVQNGHPDRAMVCFWSMQADGVKPCRVTFITILEAVMETRDARV 247

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
           CE IH   I+ GL  D  + N ++  Y    D++   + F +++ K+V+SW+  +  F  
Sbjct: 248 CEEIHLQIIETGLEKDDKLLNLLVRSYGKCGDMEKMKESFEKLDEKNVVSWSGTIAAFSQ 307

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
             Y  +A++  ++M    +  + V  ++++   ++  +++ G+ L ++++  G  S + +
Sbjct: 308 NGYFWEAIRQLQKMDLEGVQANEVTFVSILDA-SVWEEIEEGEFLRSRIIESGYGSNVAV 366

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITE-KSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
            NS++ MY KC  L +++ VF  + E K+ +SW+++++ Y QN  A EA+  F  M  E 
Sbjct: 367 CNSLVNMYGKCHSLGNAKEVFWSMEERKNEISWSSLVAAYAQNNQATEAMKLFQHMDLEG 426

Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN---CLISSYSKCGNV 404
               D +TL+S+L A G+L A +   Q+H    EAG  R   V N    L++ Y++C ++
Sbjct: 427 LKP-DRVTLISVLDACGDLRASKQSSQIHARVLEAGLERDVVVANALTALLNMYARCHSL 485

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG---EVPDSSTYLSI 461
           + A  VF  M   +D + WN+++  Y  +G G+ AL ++ +M   G     P+  T++S 
Sbjct: 486 EDARKVFAGM-CRKDAICWNSLLAAYAQSGSGKEALQIFREMDLEGCKSMKPNDVTFVST 544

Query: 462 LNACGHAGLTNDGLVIFNQMIE 483
           ++AC ++     G+V   +  E
Sbjct: 545 IDACANSMDLASGIVFHRRAAE 566



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/318 (29%), Positives = 165/318 (51%), Gaps = 6/318 (1%)

Query: 148 PNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQI 207
            N  T   ++  CV LG+    + IH  +++ G+  +  V N +++MY     L+ A +I
Sbjct: 27  ANPSTYALMLDWCVRLGALEAGKRIHRHSVECGMGKNRFVENLLINMYGKCGALEEARKI 86

Query: 208 FREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDL 267
              ME  +V SWT M+  +    +  DAL+ F +M    +  + V    +IS        
Sbjct: 87  LDRMEDSNVFSWTIMLAAYAQNGHLDDALECFWKMELEGVRANRV---TIISALGCCKSF 143

Query: 268 KRGKQLHAQVVLGG-LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISG 326
            RG+  H+++   G L  ++ + N+++++Y +C ++D +RSVF++I  K LVSWTA+IS 
Sbjct: 144 SRGQWFHSRIKQEGFLPDDVMIQNALVSLYGRCCEVDQARSVFDEICNKDLVSWTAMISA 203

Query: 327 YVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPR 386
           +VQNG    A+  F  M+ +       +T ++IL A  E     +C ++H    E G  +
Sbjct: 204 FVQNGHPDRAMVCFWSMQADGVKPC-RVTFITILEAVMETRDARVCEEIHLQIIETGLEK 262

Query: 387 YRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM 446
              + N L+ SY KCG+++     FE++   ++VVSW+  I  +  NG+   A+    KM
Sbjct: 263 DDKLLNLLVRSYGKCGDMEKMKESFEKLD-EKNVVSWSGTIAAFSQNGYFWEAIRQLQKM 321

Query: 447 TETGEVPDSSTYLSILNA 464
              G   +  T++SIL+A
Sbjct: 322 DLEGVQANEVTFVSILDA 339



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 9/155 (5%)

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
           L Q ++  ++     +  T   +L     L ALE   ++H  + E G  + R V+N LI+
Sbjct: 13  LEQAVEDLEQHQRDANPSTYALMLDWCVRLGALEAGKRIHRHSVECGMGKNRFVENLLIN 72

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
            Y KCG ++ A  + + M    +V SW  ++  Y  NGH + AL  + KM   G   +  
Sbjct: 73  MYGKCGALEEARKILDRMED-SNVFSWTIMLAAYAQNGHLDDALECFWKMELEGVRANRV 131

Query: 457 TYLSILNACG--------HAGLTNDGLVIFNQMIE 483
           T +S L  C         H+ +  +G +  + MI+
Sbjct: 132 TIISALGCCKSFSRGQWFHSRIKQEGFLPDDVMIQ 166


>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 620

 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 134/411 (32%), Positives = 221/411 (53%), Gaps = 4/411 (0%)

Query: 128 NKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSV 187
             LF +++ L+     SG  P+A +   +++ C +L      + +H   I+ G   +  V
Sbjct: 28  QSLFTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVIRGGCEAEPFV 87

Query: 188 NNSVLDMYSCLMDLDAAIQIFREMECKDV--ISWTRMMGLFVDFEYAGDALKIFREMRKS 245
             +++ MY     ++ A ++F E        + +  ++  +       DA  +FR M+++
Sbjct: 88  LTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVSDAAFMFRRMKET 147

Query: 246 RIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSS 305
            +  D+V +L L+ +  +   L  G+ LH + V GG  SE+ + NS I MY KCG ++S 
Sbjct: 148 GVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYSEVAVLNSFITMYMKCGSVESG 207

Query: 306 RSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGE 365
           R +F+++  K L++W A+ISGY QNG A + L  F +M+       D  TLVS+L++   
Sbjct: 208 RRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSGV-CPDPFTLVSVLSSCAH 266

Query: 366 LAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNT 425
           L A +I  ++  +    GF     + N LIS Y++CGN+  A  VF+ M  ++ +VSW  
Sbjct: 267 LGAKKIGQEVGELVEANGFAPNVFLSNALISMYARCGNLAKARAVFDIMP-VKSLVSWTA 325

Query: 426 IIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEEN 485
           +I  YG++G GET L L+  M + G  PD + ++ +L+AC H+GLT+ GL +F  M  E 
Sbjct: 326 MIGCYGMHGMGETGLTLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREY 385

Query: 486 KVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
           K++P  EHY C+VDLL RAG L +A      +       +W ALL  C +H
Sbjct: 386 KLEPGPEHYSCLVDLLGRAGRLDEAMEFIDSMPVEPDGAVWGALLGACKIH 436



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 110/441 (24%), Positives = 203/441 (46%), Gaps = 34/441 (7%)

Query: 37  VSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGL 96
            SW++ +   +      +S+  +  M+ SG  P++F+   +L + A L      + +H  
Sbjct: 16  TSWNVRLRELAYQSLFTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCH 75

Query: 97  MVKFGLESDLFE-----------GL---------KNPYL----VSCNAIVAGFINNKLFQ 132
           +++ G E++ F            GL         +NP+     V  NA+++G+  N    
Sbjct: 76  VIRGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVS 135

Query: 133 QAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVL 192
            A  +F   + +G+  ++VT+L ++  C       L   +HG  +K G   +V+V NS +
Sbjct: 136 DAAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYSEVAVLNSFI 195

Query: 193 DMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTV 252
            MY     +++  ++F EM  K +I+W  ++  +     A D L++F +M+ S +  D  
Sbjct: 196 TMYMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDPF 255

Query: 253 ALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQI 312
            L++++S  A LG  K G+++   V   G    + LSN++I+MY++CG+L  +R+VF+ +
Sbjct: 256 TLVSVLSSCAHLGAKKIGQEVGELVEANGFAPNVFLSNALISMYARCGNLAKARAVFDIM 315

Query: 313 TEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEIC 372
             KSLVSWTA+I  Y  +G     L  F  M +      D    V +L+A       +  
Sbjct: 316 PVKSLVSWTAMIGCYGMHGMGETGLTLFDDMIKRGIRP-DGAVFVMVLSACSHSGLTDKG 374

Query: 373 LQL-----HGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
           L+L          E G   Y    +CL+    + G +D A    + M    D   W  ++
Sbjct: 375 LELFRAMKREYKLEPGPEHY----SCLVDLLGRAGRLDEAMEFIDSMPVEPDGAVWGALL 430

Query: 428 YGYGVNGHGETALALYHKMTE 448
               ++ + + A   + K+ E
Sbjct: 431 GACKIHKNVDMAELAFAKVIE 451



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 163/352 (46%), Gaps = 36/352 (10%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNV--VSWSIVIHGYSINGFHEKSMKAFSH 61
           +P+  + L+S Y K G +++A  +F+E P  +   V ++ +I GY+ N     +   F  
Sbjct: 84  EPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVSDAAFMFRR 143

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------- 105
           M  +G+  +S T++G++      + L L RS+HG  VK G  S+                
Sbjct: 144 MKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYSEVAVLNSFITMYMKCGS 203

Query: 106 ------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                 LF+ +    L++ NA+++G+  N L    + LF   + SG+ P+  T+++V+  
Sbjct: 204 VESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDPFTLVSVLSS 263

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C  LG++ + + +  L    G   +V ++N+++ MY+   +L  A  +F  M  K ++SW
Sbjct: 264 CAHLGAKKIGQEVGELVEANGFAPNVFLSNALISMYARCGNLAKARAVFDIMPVKSLVSW 323

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           T M+G +         L +F +M K  I  D    + ++S  +  G   +G +L      
Sbjct: 324 TAMIGCYGMHGMGETGLTLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLEL-----F 378

Query: 280 GGLQSELRLS------NSIIAMYSKCGDLDSSRSVFNQI-TEKSLVSWTAII 324
             ++ E +L       + ++ +  + G LD +    + +  E     W A++
Sbjct: 379 RAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIDSMPVEPDGAVWGALL 430


>gi|297725471|ref|NP_001175099.1| Os07g0203900 [Oryza sativa Japonica Group]
 gi|255677594|dbj|BAH93827.1| Os07g0203900 [Oryza sativa Japonica Group]
          Length = 721

 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 144/432 (33%), Positives = 235/432 (54%), Gaps = 3/432 (0%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           LF+ +     V+ N ++ G   +     AV  F     +G+ P A ++ +V+  CV L  
Sbjct: 71  LFDQMPARTAVTWNTLIHGHARSAAPGLAVAAFARMARAGVSPTASSVSSVLVACVRLED 130

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
            A    +H + +  G    V V  +++DMY+    L AA Q+FREME K+V ++T ++  
Sbjct: 131 AAAGATLHSVGLMHGFCASVVVGTALVDMYAKCHHLGAAQQVFREMEEKNVATFTALVAG 190

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           FV      DA+ + REM +S +  + +   +L+S  A   D+  GKQ+H  V+  GL+ +
Sbjct: 191 FVLSRRPHDAMLLVREMERSGVAPNLMTYSSLLSSFASPEDIDHGKQVHCAVLKKGLEHD 250

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
             + ++++ MYSKCG L++   V   ++ +  VS+ ++ISG    G  +EA   F++MR+
Sbjct: 251 QFVLSALVTMYSKCGILENFVKVQMSVSCQDQVSFNSVISGLSCLGRGKEAFQHFLEMRR 310

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
             TD +D  T  S+L A G  ++L    Q+H +  + G+     VQN LIS Y++ G + 
Sbjct: 311 HGTD-MDVFTFASVLKAIGSSSSLLEGRQVHTLILKIGYDSVVDVQNSLISMYARHGAIG 369

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            +  VF  M    ++VSWN+++ G   +GHG+  + ++ +M      PD  T+LS+L AC
Sbjct: 370 ESNGVFISME-APNLVSWNSLMSGCAQHGHGKEVVEMFEQMRRLHVQPDHITFLSVLTAC 428

Query: 466 GHAGLTNDGLVIFNQMIEENK-VKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
            H GL + GL  FN M ++   V    EHY C+VDLL RAG L++A  L   +    G +
Sbjct: 429 SHVGLVDKGLEYFNLMKDKGYLVGARTEHYACMVDLLGRAGYLNEAEYLINGMPIKPGAS 488

Query: 525 IWRALLSGCVLH 536
           ++RALLS C +H
Sbjct: 489 VYRALLSACQIH 500



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 116/502 (23%), Positives = 237/502 (47%), Gaps = 26/502 (5%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           + ++ LL+ Y +S ++ EA++LFD++P +  V+W+ +IHG++ +     ++ AF+ M  +
Sbjct: 50  FATTALLAFYCRSRRLPEAQHLFDQMPARTAVTWNTLIHGHARSAAPGLAVAAFARMARA 109

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIH--GLMVKF--------------------GLE 103
           G+ P + ++  VLVA   L++     ++H  GLM  F                    G  
Sbjct: 110 GVSPTASSVSSVLVACVRLEDAAAGATLHSVGLMHGFCASVVVGTALVDMYAKCHHLGAA 169

Query: 104 SDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
             +F  ++   + +  A+VAGF+ ++    A+LL      SG+ PN +T  +++    + 
Sbjct: 170 QQVFREMEEKNVATFTALVAGFVLSRRPHDAMLLVREMERSGVAPNLMTYSSLLSSFASP 229

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
                 + +H   +K GL  D  V ++++ MYS    L+  +++   + C+D +S+  ++
Sbjct: 230 EDIDHGKQVHCAVLKKGLEHDQFVLSALVTMYSKCGILENFVKVQMSVSCQDQVSFNSVI 289

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
                     +A + F EMR+     D     +++        L  G+Q+H  ++  G  
Sbjct: 290 SGLSCLGRGKEAFQHFLEMRRHGTDMDVFTFASVLKAIGSSSSLLEGRQVHTLILKIGYD 349

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
           S + + NS+I+MY++ G +  S  VF  +   +LVSW +++SG  Q+G  +E +  F +M
Sbjct: 350 SVVDVQNSLISMYARHGAIGESNGVFISMEAPNLVSWNSLMSGCAQHGHGKEVVEMFEQM 409

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN--CLISSYSKC 401
           R+      D IT +S+LTA   +  ++  L+   +  + G+      ++  C++    + 
Sbjct: 410 RRLHVQP-DHITFLSVLTACSHVGLVDKGLEYFNLMKDKGYLVGARTEHYACMVDLLGRA 468

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G ++ A  +   M        +  ++    ++G+ E  + +  ++ E     DSS ++ +
Sbjct: 469 GYLNEAEYLINGMPIKPGASVYRALLSACQIHGNLEIVIRVSKRLIELNP-HDSSVHVQL 527

Query: 462 LNACGHAGLTNDGLVIFNQMIE 483
            NA    G   +   I   M E
Sbjct: 528 SNAFAGDGRWGNAAEIREAMSE 549



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 83/371 (22%), Positives = 176/371 (47%), Gaps = 27/371 (7%)

Query: 178 KLGLIL-DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDAL 236
           KLG +  ++    ++L  Y     L  A  +F +M  +  ++W  ++         G A+
Sbjct: 41  KLGFLASNLFATTALLAFYCRSRRLPEAQHLFDQMPARTAVTWNTLIHGHARSAAPGLAV 100

Query: 237 KIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMY 296
             F  M ++ +     ++ +++     L D   G  LH+  ++ G  + + +  +++ MY
Sbjct: 101 AAFARMARAGVSPTASSVSSVLVACVRLEDAAAGATLHSVGLMHGFCASVVVGTALVDMY 160

Query: 297 SKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV--DSI 354
           +KC  L +++ VF ++ EK++ ++TA+++G+V    +R   +  + +R+ +   V  + +
Sbjct: 161 AKCHHLGAAQQVFREMEEKNVATFTALVAGFV---LSRRPHDAMLLVREMERSGVAPNLM 217

Query: 355 TLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM 414
           T  S+L++      ++   Q+H    + G    + V + L++ YSKCG ++  ++  +  
Sbjct: 218 TYSSLLSSFASPEDIDHGKQVHCAVLKKGLEHDQFVLSALVTMYSKCGILE-NFVKVQMS 276

Query: 415 GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDG 474
              +D VS+N++I G    G G+ A   + +M   G   D  T+ S+L A G +    +G
Sbjct: 277 VSCQDQVSFNSVISGLSCLGRGKEAFQHFLEMRRHGTDMDVFTFASVLKAIGSSSSLLEG 336

Query: 475 LVIFNQMIEENKVKPSQEHYGCVVD-------LLARAGCLSDASGLAGKLLEGMGPNI-- 525
             +   +++          Y  VVD       + AR G + +++G+    +    PN+  
Sbjct: 337 RQVHTLILKIG--------YDSVVDVQNSLISMYARHGAIGESNGV---FISMEAPNLVS 385

Query: 526 WRALLSGCVLH 536
           W +L+SGC  H
Sbjct: 386 WNSLMSGCAQH 396


>gi|218199277|gb|EEC81704.1| hypothetical protein OsI_25308 [Oryza sativa Indica Group]
          Length = 749

 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 144/432 (33%), Positives = 234/432 (54%), Gaps = 3/432 (0%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           LF+ +     V+ N ++ G   +     AV  F     +G+ P A ++ +V+  CV L  
Sbjct: 116 LFDQMPARTAVTWNTLIHGHARSAAPGLAVAAFARMARAGVSPTASSVSSVLVACVRLED 175

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
            A    +H + +  G    V V  +++DMY+    L AA Q+FREME K+V ++T ++  
Sbjct: 176 AAAGATLHSVGLMHGFCASVVVGTALVDMYAKCHHLGAAQQVFREMEEKNVATFTALVAG 235

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           FV      DA+ + REM +S +  + +   +L+S  A   D+  GKQ+H  V+  GL+ +
Sbjct: 236 FVLSRRPHDAMLLVREMERSGVAPNLMTYSSLLSSFASPEDIDHGKQVHCAVLKKGLEHD 295

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
             + ++++ MYSKCG L+    V   ++ +  VS+ ++ISG    G  +EA   F++MR+
Sbjct: 296 QFVLSALVTMYSKCGILEDFVKVQMSVSCQDQVSFNSVISGLSCLGRGKEAFQHFLEMRR 355

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
             TD +D  T  S+L A G  ++L    Q+H +  + G+     VQN LIS Y++ G + 
Sbjct: 356 HGTD-MDVFTFASVLKAIGSSSSLLEGRQVHTLILKIGYDSVVDVQNSLISMYARHGAIG 414

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            +  VF  M    ++VSWN+++ G   +GHG+  + ++ +M      PD  T+LS+L AC
Sbjct: 415 ESNGVFISME-APNLVSWNSLMSGCAQHGHGKEVVEMFEQMRRLHVQPDHITFLSVLTAC 473

Query: 466 GHAGLTNDGLVIFNQMIEENK-VKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
            H GL + GL  FN M ++   V    EHY C+VDLL RAG L++A  L   +    G +
Sbjct: 474 SHVGLVDKGLEYFNLMKDKGYLVGARTEHYACMVDLLGRAGYLNEAEYLINGMPIKPGAS 533

Query: 525 IWRALLSGCVLH 536
           ++RALLS C +H
Sbjct: 534 VYRALLSACQIH 545



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 116/502 (23%), Positives = 237/502 (47%), Gaps = 26/502 (5%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           + ++ LL+ Y +S ++ EA++LFD++P +  V+W+ +IHG++ +     ++ AF+ M  +
Sbjct: 95  FATTALLAFYCRSRRLPEAQHLFDQMPARTAVTWNTLIHGHARSAAPGLAVAAFARMARA 154

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIH--GLMVKF--------------------GLE 103
           G+ P + ++  VLVA   L++     ++H  GLM  F                    G  
Sbjct: 155 GVSPTASSVSSVLVACVRLEDAAAGATLHSVGLMHGFCASVVVGTALVDMYAKCHHLGAA 214

Query: 104 SDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
             +F  ++   + +  A+VAGF+ ++    A+LL      SG+ PN +T  +++    + 
Sbjct: 215 QQVFREMEEKNVATFTALVAGFVLSRRPHDAMLLVREMERSGVAPNLMTYSSLLSSFASP 274

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
                 + +H   +K GL  D  V ++++ MYS    L+  +++   + C+D +S+  ++
Sbjct: 275 EDIDHGKQVHCAVLKKGLEHDQFVLSALVTMYSKCGILEDFVKVQMSVSCQDQVSFNSVI 334

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
                     +A + F EMR+     D     +++        L  G+Q+H  ++  G  
Sbjct: 335 SGLSCLGRGKEAFQHFLEMRRHGTDMDVFTFASVLKAIGSSSSLLEGRQVHTLILKIGYD 394

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
           S + + NS+I+MY++ G +  S  VF  +   +LVSW +++SG  Q+G  +E +  F +M
Sbjct: 395 SVVDVQNSLISMYARHGAIGESNGVFISMEAPNLVSWNSLMSGCAQHGHGKEVVEMFEQM 454

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN--CLISSYSKC 401
           R+      D IT +S+LTA   +  ++  L+   +  + G+      ++  C++    + 
Sbjct: 455 RRLHVQP-DHITFLSVLTACSHVGLVDKGLEYFNLMKDKGYLVGARTEHYACMVDLLGRA 513

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G ++ A  +   M        +  ++    ++G+ E  + +  ++ E     DSS ++ +
Sbjct: 514 GYLNEAEYLINGMPIKPGASVYRALLSACQIHGNLEIVIRVSKRLIELNP-HDSSVHVQL 572

Query: 462 LNACGHAGLTNDGLVIFNQMIE 483
            NA    G   +   I   M E
Sbjct: 573 SNAFAGDGRWGNAAEIREAMSE 594



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 83/371 (22%), Positives = 176/371 (47%), Gaps = 27/371 (7%)

Query: 178 KLGLIL-DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDAL 236
           KLG +  ++    ++L  Y     L  A  +F +M  +  ++W  ++         G A+
Sbjct: 86  KLGFLASNLFATTALLAFYCRSRRLPEAQHLFDQMPARTAVTWNTLIHGHARSAAPGLAV 145

Query: 237 KIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMY 296
             F  M ++ +     ++ +++     L D   G  LH+  ++ G  + + +  +++ MY
Sbjct: 146 AAFARMARAGVSPTASSVSSVLVACVRLEDAAAGATLHSVGLMHGFCASVVVGTALVDMY 205

Query: 297 SKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV--DSI 354
           +KC  L +++ VF ++ EK++ ++TA+++G+V    +R   +  + +R+ +   V  + +
Sbjct: 206 AKCHHLGAAQQVFREMEEKNVATFTALVAGFV---LSRRPHDAMLLVREMERSGVAPNLM 262

Query: 355 TLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM 414
           T  S+L++      ++   Q+H    + G    + V + L++ YSKCG ++  ++  +  
Sbjct: 263 TYSSLLSSFASPEDIDHGKQVHCAVLKKGLEHDQFVLSALVTMYSKCGILE-DFVKVQMS 321

Query: 415 GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDG 474
              +D VS+N++I G    G G+ A   + +M   G   D  T+ S+L A G +    +G
Sbjct: 322 VSCQDQVSFNSVISGLSCLGRGKEAFQHFLEMRRHGTDMDVFTFASVLKAIGSSSSLLEG 381

Query: 475 LVIFNQMIEENKVKPSQEHYGCVVD-------LLARAGCLSDASGLAGKLLEGMGPNI-- 525
             +   +++          Y  VVD       + AR G + +++G+    +    PN+  
Sbjct: 382 RQVHTLILKIG--------YDSVVDVQNSLISMYARHGAIGESNGV---FISMEAPNLVS 430

Query: 526 WRALLSGCVLH 536
           W +L+SGC  H
Sbjct: 431 WNSLMSGCAQH 441


>gi|125564656|gb|EAZ10036.1| hypothetical protein OsI_32340 [Oryza sativa Indica Group]
          Length = 644

 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 141/464 (30%), Positives = 235/464 (50%), Gaps = 37/464 (7%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           LF+ + +P     N+++  + N+   Q+A+ L       G++PN  T+  +++ C  + +
Sbjct: 66  LFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACARVQA 125

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
                + HG+ +KLG +  V V N++L  Y+    L  + + F EM  ++V+SW  M+  
Sbjct: 126 WEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMING 185

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +       +A  +F  MR+  ++ D   L++L+   +  G+L+ GK +H+ +++ G + +
Sbjct: 186 YAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRID 245

Query: 286 LRLSNSIIAMYSKCGDL-------------------------------DSSRSVFNQITE 314
           L L+N+++ MY KCGDL                               D++R  F QI E
Sbjct: 246 LILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQIPE 305

Query: 315 KSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQ 374
           KS++SW A+IS YVQ G   EAL+ + +M+     + D  TL ++L+A G+L  L     
Sbjct: 306 KSIISWNAMISCYVQGGRFHEALDLYNRMKLLGL-APDEFTLAAVLSACGQLGDLASGKM 364

Query: 375 LHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNG 434
           +H    +       ++ N L+  Y++CG VD A  +F EM   ++V+SWN II    ++G
Sbjct: 365 IHDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMPS-KNVISWNAIIGALAMHG 423

Query: 435 HGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY 494
             + AL  +  M      PD  T++++L+AC H GL   G   F  M     VKP  EHY
Sbjct: 424 RAQDALMFFRSMVSDAFPPDEITFVALLSACNHGGLLEAGQYYFQAMRHVYNVKPGVEHY 483

Query: 495 GCVVDLLARAGCLSDASGLAGKLLEGMGPN--IWRALLSGCVLH 536
            C+VDLL R G L+ A  L   +   M P+  +W ALL  C +H
Sbjct: 484 ACMVDLLGRGGQLAKAVDLIKDM--PMRPDVVVWGALLGACRIH 525



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 127/496 (25%), Positives = 223/496 (44%), Gaps = 80/496 (16%)

Query: 8   SSKLLSNYFK---SGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML 64
           +S++L++Y      G +  A  LFD IP+ +   ++ +I  Y  +   ++++     M+ 
Sbjct: 44  TSQILASYCALPAGGGVWYARQLFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIR 103

Query: 65  SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPY-------- 114
            G+LPN FT+  +L A A +Q  E     HG++VK G    +F G  L + Y        
Sbjct: 104 RGILPNEFTLPFLLKACARVQAWEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGD 163

Query: 115 ------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA 162
                       +VS N+++ G+      ++A  LF   R  GL+ +  T+++++  C A
Sbjct: 164 SRRFFDEMVDRNVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSA 223

Query: 163 LGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDL--------------------- 201
            G+    +L+H   +  G  +D+ + N+++DMY    DL                     
Sbjct: 224 EGNLEFGKLVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSM 283

Query: 202 ----------DAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDT 251
                     DAA   F ++  K +ISW  M+  +V      +AL ++  M+   +  D 
Sbjct: 284 LCALAKRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDE 343

Query: 252 VALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQ 311
             L  ++S    LGDL  GK +H  +        + L NS++ MY++CG +D++ S+F++
Sbjct: 344 FTLAAVLSACGQLGDLASGKMIHDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSE 403

Query: 312 ITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEI 371
           +  K+++SW AII     +G A++AL  F  M  +     D IT V++L+A         
Sbjct: 404 MPSKNVISWNAIIGALAMHGRAQDALMFFRSMVSDAFPP-DEITFVALLSACN------- 455

Query: 372 CLQLHGIAFEAG---FPRYRSVQN---------CLISSYSKCGNVDLAYIVFEEMGFLRD 419
               HG   EAG   F   R V N         C++    + G +  A  + ++M    D
Sbjct: 456 ----HGGLLEAGQYYFQAMRHVYNVKPGVEHYACMVDLLGRGGQLAKAVDLIKDMPMRPD 511

Query: 420 VVSWNTIIYGYGVNGH 435
           VV W  ++    ++GH
Sbjct: 512 VVVWGALLGACRIHGH 527



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 100/372 (26%), Positives = 166/372 (44%), Gaps = 38/372 (10%)

Query: 204 AIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAI 263
           A Q+F  +   D   +  ++  + +     +AL + R M +  I+ +   L  L+   A 
Sbjct: 63  ARQLFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACAR 122

Query: 264 LGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAI 323
           +   +     H  VV  G   ++ + N+++  Y+  G L  SR  F+++ ++++VSW ++
Sbjct: 123 VQAWEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSM 182

Query: 324 ISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG 383
           I+GY Q G  REA + F  MR++     D  TLVS+L A      LE    +H      G
Sbjct: 183 INGYAQAGNTREACSLFEGMRRQGL-LADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRG 241

Query: 384 FPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGF---------------------LRD--- 419
                 + N L+  Y KCG++ +A+  F+ M F                      RD   
Sbjct: 242 CRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFE 301

Query: 420 ------VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTND 473
                 ++SWN +I  Y   G    AL LY++M   G  PD  T  ++L+ACG  G    
Sbjct: 302 QIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLAS 361

Query: 474 GLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI--WRALLS 531
           G +I +  I +N   P    +  ++D+ AR G +  A  L  ++      N+  W A++ 
Sbjct: 362 GKMI-HDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMPS---KNVISWNAIIG 417

Query: 532 GCVLHVGRFQDA 543
              +H GR QDA
Sbjct: 418 ALAMH-GRAQDA 428


>gi|125529041|gb|EAY77155.1| hypothetical protein OsI_05121 [Oryza sativa Indica Group]
          Length = 916

 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 161/550 (29%), Positives = 274/550 (49%), Gaps = 33/550 (6%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L++ Y++ G  + AE +F     KN+V+W+ +I G   N    ++M  F  M  S   P+
Sbjct: 308 LITFYYELGFPEAAEEVFLSTSNKNLVTWNAMIKGLVENDRVNEAMCMFQEMR-SKNQPD 366

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFG--LES--------DLFEGLKNPY------ 114
             T+V ++ A      L   + +HG ++K G   E         DL+    +P       
Sbjct: 367 VATLVTIISACGDRGLLPEGKEVHGYIIKKGHIYEECSVGNSLLDLYMKCNDPSTARILF 426

Query: 115 -------LVSCNAIVAGFI-NNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
                  L+S N +++G+  N+ L ++A  +F      GL     T++ VI  C      
Sbjct: 427 RTMPMRDLISWNTMISGYSRNDSLGEEAKAMFKGLLSEGLSCTLSTVVAVIPSCFCPQDL 486

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM-ECKDVISW-TRMMG 224
              + +H   +K G +  VS  NS++ MY C  D  AA  +   +    D+ISW T ++G
Sbjct: 487 NFGKSVHSFILKYGFLTGVSAANSLIHMYICCGDSLAAFSLLESITPMSDIISWNTAIVG 546

Query: 225 LFVDFEYAGDALKIFREMRKSRII-CDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
              +  Y GDAL+ F+ M  +  +  D++ L++++SV   L     GK +H   +   ++
Sbjct: 547 CVQNGLY-GDALEAFQFMHSTLTLNPDSITLVSVLSVCGNLKLQSLGKSIHCMALKRLIE 605

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
             LR+ N+++ MY + GD +S+  +F+ +  ++L SW  +ISG+ QN     AL  + KM
Sbjct: 606 FNLRVKNALLTMYFRFGDTESAELIFSSLVGRNLCSWNCMISGFAQNNEGLRALQFYKKM 665

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
              + +    I++V I+ A  +L  L     +HG     G      +   L+  YSKCG 
Sbjct: 666 EYFEPNE---ISIVGIICACTQLGDLRQGKNIHGHVVRFGLQTNVFISASLVDMYSKCGR 722

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           +D++  VFE     + +  WN++I  +G +G G  ++ ++ KM  +G     ST++++L+
Sbjct: 723 LDISIRVFESSA-EKSIACWNSMISAFGFHGLGLKSIEIFWKMNNSGVKATRSTFIALLS 781

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
           AC H+GLT++GL  ++ MIE   + P+ EH+ CVVD+L RAG L +A      L      
Sbjct: 782 ACSHSGLTDEGLKYYHLMIEHFGIIPTPEHHVCVVDMLGRAGRLQEAHKFVESLPSKQAH 841

Query: 524 NIWRALLSGC 533
            +W ALLS C
Sbjct: 842 GVWGALLSAC 851



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 144/500 (28%), Positives = 235/500 (47%), Gaps = 31/500 (6%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+  Y K G    +E +F  +P ++  SW+ ++ G   NG  E S   F  M+ S    +
Sbjct: 205 LMDMYAKCGDFYSSEVVFQRMPYRDTTSWNSMVSGSLFNGLAEISAYYFKEMVRSSFQAD 264

Query: 71  SFTMVGVLVAAAGLQNL-ELARSIHGLMVKFGLE-----------------------SDL 106
             ++  VL A + L++L     S+H  ++K G E                        ++
Sbjct: 265 EVSLSCVLSACSHLKDLFSFGESVHSSVIKLGYEDTTSSVENSLITFYYELGFPEAAEEV 324

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           F    N  LV+ NA++ G + N    +A+ +F   R     P+  T++T+I  C   G  
Sbjct: 325 FLSTSNKNLVTWNAMIKGLVENDRVNEAMCMFQEMRSKN-QPDVATLVTIISACGDRGLL 383

Query: 167 ALCELIHGLTIKLGLIL-DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
              + +HG  IK G I  + SV NS+LD+Y    D   A  +FR M  +D+ISW  M+  
Sbjct: 384 PEGKEVHGYIIKKGHIYEECSVGNSLLDLYMKCNDPSTARILFRTMPMRDLISWNTMISG 443

Query: 226 FVDFEYAGDALK-IFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
           +   +  G+  K +F+ +    + C    ++ +I       DL  GK +H+ ++  G  +
Sbjct: 444 YSRNDSLGEEAKAMFKGLLSEGLSCTLSTVVAVIPSCFCPQDLNFGKSVHSFILKYGFLT 503

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKS-LVSWTAIISGYVQNGCAREALNQFIKM 343
            +  +NS+I MY  CGD  ++ S+   IT  S ++SW   I G VQNG   +AL  F  M
Sbjct: 504 GVSAANSLIHMYICCGDSLAAFSLLESITPMSDIISWNTAIVGCVQNGLYGDALEAFQFM 563

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
               T + DSITLVS+L+  G L    +   +H +A +        V+N L++ Y + G+
Sbjct: 564 HSTLTLNPDSITLVSVLSVCGNLKLQSLGKSIHCMALKRLIEFNLRVKNALLTMYFRFGD 623

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
            + A ++F  +   R++ SWN +I G+  N  G  AL  Y KM E  E P+  + + I+ 
Sbjct: 624 TESAELIFSSL-VGRNLCSWNCMISGFAQNNEGLRALQFYKKM-EYFE-PNEISIVGIIC 680

Query: 464 ACGHAGLTNDGLVIFNQMIE 483
           AC   G    G  I   ++ 
Sbjct: 681 ACTQLGDLRQGKNIHGHVVR 700



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 135/513 (26%), Positives = 239/513 (46%), Gaps = 31/513 (6%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +DP   + +++ Y +   +  A  +FDE    +++ W+  I   ++N  +  ++  F  M
Sbjct: 96  LDPPVRTSVITAYSRVRDVCSALQVFDEAAAPDLILWNAAISALTLNCRYGDAVVLFRWM 155

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------- 106
           +    + +S +MV +L  A+  ++LE   + HG+ +K  L++DL                
Sbjct: 156 VDVLGVFDSTSMVIMLSGASRARSLEHGIAFHGMALKRRLDTDLSLWNTLMDMYAKCGDF 215

Query: 107 ------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                 F+ +      S N++V+G + N L + +   F     S    + V++  V+  C
Sbjct: 216 YSSEVVFQRMPYRDTTSWNSMVSGSLFNGLAEISAYYFKEMVRSSFQADEVSLSCVLSAC 275

Query: 161 VALGSR-ALCELIHGLTIKLGL-ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
             L    +  E +H   IKLG      SV NS++  Y  L   +AA ++F     K++++
Sbjct: 276 SHLKDLFSFGESVHSSVIKLGYEDTTSSVENSLITFYYELGFPEAAEEVFLSTSNKNLVT 335

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           W  M+   V+ +   +A+ +F+EMR S+   D   L+ +IS     G L  GK++H  ++
Sbjct: 336 WNAMIKGLVENDRVNEAMCMFQEMR-SKNQPDVATLVTIISACGDRGLLPEGKEVHGYII 394

Query: 279 LGG-LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
             G +  E  + NS++ +Y KC D  ++R +F  +  + L+SW  +ISGY +N    E  
Sbjct: 395 KKGHIYEECSVGNSLLDLYMKCNDPSTARILFRTMPMRDLISWNTMISGYSRNDSLGEEA 454

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
               K    +  S    T+V+++ +      L     +H    + GF    S  N LI  
Sbjct: 455 KAMFKGLLSEGLSCTLSTVVAVIPSCFCPQDLNFGKSVHSFILKYGFLTGVSAANSLIHM 514

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV-PDSS 456
           Y  CG+   A+ + E +  + D++SWNT I G   NG    AL  +  M  T  + PDS 
Sbjct: 515 YICCGDSLAAFSLLESITPMSDIISWNTAIVGCVQNGLYGDALEAFQFMHSTLTLNPDSI 574

Query: 457 TYLSILNACGHAGLTNDGLVI----FNQMIEEN 485
           T +S+L+ CG+  L + G  I      ++IE N
Sbjct: 575 TLVSVLSVCGNLKLQSLGKSIHCMALKRLIEFN 607



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 164/319 (51%), Gaps = 7/319 (2%)

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM-GLFVDFE 230
           +H   +K   +LD  V  SV+  YS + D+ +A+Q+F E    D+I W   +  L ++  
Sbjct: 85  LHCAALKSAAVLDPPVRTSVITAYSRVRDVCSALQVFDEAAAPDLILWNAAISALTLNCR 144

Query: 231 YAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSN 290
           Y GDA+ +FR M     + D+ +++ ++S  +    L+ G   H   +   L ++L L N
Sbjct: 145 Y-GDAVVLFRWMVDVLGVFDSTSMVIMLSGASRARSLEHGIAFHGMALKRRLDTDLSLWN 203

Query: 291 SIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDS 350
           +++ MY+KCGD  SS  VF ++  +   SW +++SG + NG A  +   F +M +    +
Sbjct: 204 TLMDMYAKCGDFYSSEVVFQRMPYRDTTSWNSMVSGSLFNGLAEISAYYFKEMVRSSFQA 263

Query: 351 VDSITLVSILTASGELAAL-EICLQLHGIAFEAGFP-RYRSVQNCLISSYSKCGNVDLAY 408
            D ++L  +L+A   L  L      +H    + G+     SV+N LI+ Y + G  + A 
Sbjct: 264 -DEVSLSCVLSACSHLKDLFSFGESVHSSVIKLGYEDTTSSVENSLITFYYELGFPEAAE 322

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
            VF      +++V+WN +I G   N     A+ ++ +M    + PD +T ++I++ACG  
Sbjct: 323 EVFLSTSN-KNLVTWNAMIKGLVENDRVNEAMCMFQEMRSKNQ-PDVATLVTIISACGDR 380

Query: 469 GLTNDGLVIFNQMIEENKV 487
           GL  +G  +   +I++  +
Sbjct: 381 GLLPEGKEVHGYIIKKGHI 399


>gi|297800128|ref|XP_002867948.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313784|gb|EFH44207.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 919

 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 163/558 (29%), Positives = 271/558 (48%), Gaps = 52/558 (9%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM-LSG 66
           ++ ++S Y K G I+ AE +F+E+  K+V+SW+ +++G S NG  E++      M  +  
Sbjct: 319 ANSIISMYSKCGDIEAAETVFEELLCKDVISWNAILNGLSANGMFEEAFGILKEMQSVDK 378

Query: 67  LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--------------------- 105
           + P+  T+V +             R+IHG  V+  ++S                      
Sbjct: 379 IQPDISTVVSITSICGDFCLSREGRAIHGYTVRREMQSRALEVINSVIDMYGKCGLTTQA 438

Query: 106 --LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVP--NAVTMLTVIRGCV 161
             LF+   +  LVS N++++ F  N   Q+A  LF            +  T+L ++  C 
Sbjct: 439 EFLFKTTTHRDLVSWNSMISAFAQNGFTQEAKNLFREVVSEYTCSKFSLSTVLAILTSCD 498

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
           +  S    + +H    KLG            D+ S  + L+    IF   E +D+ SW  
Sbjct: 499 SSDSLIFGKSVHCWLQKLG------------DLTSAFLLLE---MIF---ETRDLTSWNS 540

Query: 222 MMGLFVDFEYAGDALKIFREM-RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
           ++       +  ++L+ F+ M R+ +I  D + LL  IS +  L  + +G+ LH   +  
Sbjct: 541 VIYGCASSGHHLESLRAFQAMSREGKIRHDLITLLGTISASGNLRLVLQGRCLHGLAIKS 600

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
             + + +L N++I MY +C D +S+  VF  I++ +L SW  +IS   QN   RE    F
Sbjct: 601 LRELDTQLQNTLITMYGRCKDTESAVKVFGLISDPNLCSWNCVISALSQNKAGREVFQLF 660

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
             ++ E  +    IT V +L+AS +L +    +Q H      GF     V   L+  YS 
Sbjct: 661 RNLKLEPNE----ITFVGLLSASTQLGSTSYGMQAHCHLIRRGFQANPFVSAALVDMYSS 716

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTE--TGEVPDSSTY 458
           CG ++    VF   G ++ + +WN++I  YG +G GE A+ L+ +M+   +G  P+ ST+
Sbjct: 717 CGMLETGMKVFRNSG-VKSISAWNSVISAYGFHGMGEKAMELFKEMSSGNSGMEPNKSTF 775

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
           +S+L+AC H+G  N+GL  +NQM E+  VKP  EH  C+VD+L RAG L +A      + 
Sbjct: 776 ISLLSACSHSGFINEGLRYYNQMEEKFGVKPVTEHRVCIVDMLGRAGKLKEAYEFIIGIG 835

Query: 519 EGMGPNIWRALLSGCVLH 536
           E     +W ALLS C  H
Sbjct: 836 EPQKAGVWGALLSACNYH 853



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 157/506 (31%), Positives = 250/506 (49%), Gaps = 61/506 (12%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D   SSKLL+ Y ++G +  +  LF E+ EK+V+ W+ +I   + NG +  ++  F  M+
Sbjct: 111 DLATSSKLLTIYGRTGDLVSSLGLFGELKEKDVIVWNSMITCLNQNGRYIAAVGLFVEMI 170

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARS---IHGLMVKFGLESD--------------- 105
             G   N F    +L+A + L +L L++    +H L ++ GL SD               
Sbjct: 171 HKG---NEFDSTTLLLAVSALSSLHLSKKCPMVHCLAIETGLVSDSSLCNALMNLYAKGE 227

Query: 106 -------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                  +F  +++  +VS N I+   + N   + +++ F    GSG   + VT   VI 
Sbjct: 228 DLSSAECVFTHMEHRDIVSWNTIMTKCLANGYPRNSLIYFKSMIGSGQEADNVTFSCVIS 287

Query: 159 GCVALGSRALCELIHGLTIKLGLILD--VSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
            C  L    L E +HGL IK G   +  VSV NS++ MYS   D++AA  +F E+ CKDV
Sbjct: 288 ACSCLEELPLGESLHGLVIKSGYSPEAHVSVANSIISMYSKCGDIEAAETVFEELLCKDV 347

Query: 217 ISWTRMM-GLFVD--FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDL---KRG 270
           ISW  ++ GL  +  FE   +A  I +EM+    I   ++   ++S+ +I GD    + G
Sbjct: 348 ISWNAILNGLSANGMFE---EAFGILKEMQSVDKIQPDIS--TVVSITSICGDFCLSREG 402

Query: 271 KQLHAQVVLGGLQSE-LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQ 329
           + +H   V   +QS  L + NS+I MY KCG    +  +F   T + LVSW ++IS + Q
Sbjct: 403 RAIHGYTVRREMQSRALEVINSVIDMYGKCGLTTQAEFLFKTTTHRDLVSWNSMISAFAQ 462

Query: 330 NGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS 389
           NG  +EA N F ++  E T S  S++ V        LA L  C     + F       +S
Sbjct: 463 NGFTQEAKNLFREVVSEYTCSKFSLSTV--------LAILTSCDSSDSLIFG------KS 508

Query: 390 VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
           V   L     K G++  A+++ E +   RD+ SWN++IYG   +GH   +L  +  M+  
Sbjct: 509 VHCWL----QKLGDLTSAFLLLEMIFETRDLTSWNSVIYGCASSGHHLESLRAFQAMSRE 564

Query: 450 GEVP-DSSTYLSILNACGHAGLTNDG 474
           G++  D  T L  ++A G+  L   G
Sbjct: 565 GKIRHDLITLLGTISASGNLRLVLQG 590



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 158/576 (27%), Positives = 256/576 (44%), Gaps = 89/576 (15%)

Query: 26  NLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQ 85
           NLFDE+P+++                  ++++A S M L  +L  SF M           
Sbjct: 60  NLFDEMPKRD-----------------NRTVEA-SFMFLRDVL-RSFMM---------RI 91

Query: 86  NLELARSIHGLMVKFGLESDL----------------------FEGLKNPYLVSCNAIVA 123
             E  RSIH   +K G   DL                      F  LK   ++  N+++ 
Sbjct: 92  ETETPRSIHCFALKCGFLQDLATSSKLLTIYGRTGDLVSSLGLFGELKEKDVIVWNSMIT 151

Query: 124 GFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLIL 183
               N  +  AV LF      G   ++ T+L  +    +L     C ++H L I+ GL+ 
Sbjct: 152 CLNQNGRYIAAVGLFVEMIHKGNEFDSTTLLLAVSALSSLHLSKKCPMVHCLAIETGLVS 211

Query: 184 DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMR 243
           D S+ N+++++Y+   DL +A  +F  ME +D++SW  +M   +   Y  ++L  F+ M 
Sbjct: 212 DSSLCNALMNLYAKGEDLSSAECVFTHMEHRDIVSWNTIMTKCLANGYPRNSLIYFKSMI 271

Query: 244 KSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLS--NSIIAMYSKCGD 301
            S    D V    +IS  + L +L  G+ LH  V+  G   E  +S  NSII+MYSKCGD
Sbjct: 272 GSGQEADNVTFSCVISACSCLEELPLGESLHGLVIKSGYSPEAHVSVANSIISMYSKCGD 331

Query: 302 LDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILT 361
           ++++ +VF ++  K ++SW AI++G   NG   EA     +M+       D  T+VSI +
Sbjct: 332 IEAAETVFEELLCKDVISWNAILNGLSANGMFEEAFGILKEMQSVDKIQPDISTVVSITS 391

Query: 362 ASGELAALEICLQLHGIAFEAGFPRYRSVQ-------NCLISSYSKCGNVDLAYIVFEEM 414
             G+      CL   G A   G+   R +Q       N +I  Y KCG    A  +F+  
Sbjct: 392 ICGDF-----CLSREGRAIH-GYTVRREMQSRALEVINSVIDMYGKCGLTTQAEFLFKTT 445

Query: 415 GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTE--TGEVPDSSTYLSILNACGHAGLTN 472
              RD+VSWN++I  +  NG  + A  L+ ++    T      ST L+IL +C     ++
Sbjct: 446 TH-RDLVSWNSMISAFAQNGFTQEAKNLFREVVSEYTCSKFSLSTVLAILTSCD----SS 500

Query: 473 DGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSG 532
           D L IF + +             C    L + G L+ A  L   + E      W +++ G
Sbjct: 501 DSL-IFGKSVH------------C---WLQKLGDLTSAFLLLEMIFETRDLTSWNSVIYG 544

Query: 533 CVLHVGRFQDAEALRSGSQKKGIIKIPGISFLNSTS 568
           C       +   A ++ S ++G I+   I+ L + S
Sbjct: 545 CASSGHHLESLRAFQAMS-REGKIRHDLITLLGTIS 579



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 129/495 (26%), Positives = 220/495 (44%), Gaps = 54/495 (10%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L++ Y K   +  AE +F  +  +++VSW+ ++     NG+   S+  F  M+ SG   +
Sbjct: 219 LMNLYAKGEDLSSAECVFTHMEHRDIVSWNTIMTKCLANGYPRNSLIYFKSMIGSGQEAD 278

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------------L 106
           + T   V+ A + L+ L L  S+HGL++K G   +                        +
Sbjct: 279 NVTFSCVISACSCLEELPLGESLHGLVIKSGYSPEAHVSVANSIISMYSKCGDIEAAETV 338

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRG-SGLVPNAVTMLTVIRGCVALGS 165
           FE L    ++S NAI+ G   N +F++A  +    +    + P+  T++++   C     
Sbjct: 339 FEELLCKDVISWNAILNGLSANGMFEEAFGILKEMQSVDKIQPDISTVVSITSICGDFCL 398

Query: 166 RALCELIHGLTIKLGL-ILDVSVNNSVLDMY-SCLMDLDAAIQIFREMECKDVISWTRMM 223
                 IHG T++  +    + V NSV+DMY  C +   A   +F+    +D++SW  M+
Sbjct: 399 SREGRAIHGYTVRREMQSRALEVINSVIDMYGKCGLTTQAEF-LFKTTTHRDLVSWNSMI 457

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
             F    +  +A  +FRE+        T +  +L +V AIL        L    + G   
Sbjct: 458 SAFAQNGFTQEAKNLFREVVSEY----TCSKFSLSTVLAILTSCDSSDSL----IFG--- 506

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITE-KSLVSWTAIISGYVQNGCAREALNQFIK 342
                  S+     K GDL S+  +   I E + L SW ++I G   +G   E+L  F  
Sbjct: 507 ------KSVHCWLQKLGDLTSAFLLLEMIFETRDLTSWNSVIYGCASSGHHLESLRAFQA 560

Query: 343 MRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
           M +E     D ITL+  ++ASG L  +     LHG+A ++       +QN LI+ Y +C 
Sbjct: 561 MSREGKIRHDLITLLGTISASGNLRLVLQGRCLHGLAIKSLRELDTQLQNTLITMYGRCK 620

Query: 403 NVDLAYIVFEEMGFLRD--VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           + + A  VF   G + D  + SWN +I     N  G     L+  +      P+  T++ 
Sbjct: 621 DTESAVKVF---GLISDPNLCSWNCVISALSQNKAGREVFQLFRNLKLE---PNEITFVG 674

Query: 461 ILNACGHAGLTNDGL 475
           +L+A    G T+ G+
Sbjct: 675 LLSASTQLGSTSYGM 689



 Score = 43.9 bits (102), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 5/104 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           +P+ S+ L+  Y   G ++    +F     K++ +W+ VI  Y  +G  EK+M+ F  M 
Sbjct: 703 NPFVSAALVDMYSSCGMLETGMKVFRNSGVKSISAWNSVISAYGFHGMGEKAMELFKEMS 762

Query: 64  L--SGLLPNSFTMVGVLVAA--AGLQNLELARSIHGLMVKFGLE 103
              SG+ PN  T + +L A   +G  N E  R  + +  KFG++
Sbjct: 763 SGNSGMEPNKSTFISLLSACSHSGFIN-EGLRYYNQMEEKFGVK 805


>gi|225445472|ref|XP_002281953.1| PREDICTED: pentatricopeptide repeat-containing protein At4g32430,
           mitochondrial [Vitis vinifera]
          Length = 773

 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 155/553 (28%), Positives = 275/553 (49%), Gaps = 40/553 (7%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L++ Y K+G    A  +F+ +   ++VSW+ V+ G+  +   + ++     M  +G+  +
Sbjct: 119 LMNMYCKAGLFDRALVVFENLNNPDIVSWNTVLSGFQRS---DDALNFALRMNFTGVAFD 175

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--------------------- 109
           + T   VL   +  +       +H  ++K GL+ ++F G                     
Sbjct: 176 AVTCTTVLAFCSDHEGFIFGFQLHSRILKCGLDCEVFVGNALITMYSRCCRLVEARRVFD 235

Query: 110 -LKNPYLVSCNAIVAGFI---NNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
            ++N  LVS NA+++G+    N+ L  +A+L+F      G+  + V+    I  C     
Sbjct: 236 EMRNKDLVSWNAMLSGYAQEGNSGL--EAILVFLEMLKEGMKLDHVSFTGAISACGHGKE 293

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
             L   IH L +K+G    V V N ++  YS   D++ A  +F  +  ++V+SWT M+ +
Sbjct: 294 FELGRQIHSLAVKIGYDTHVKVCNVLISTYSKCEDIEDAKLVFESIIDRNVVSWTTMISI 353

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
             +     DA  +F EMR+  +  + V  + LI    +   ++ G+ +H   V     SE
Sbjct: 354 SEE-----DATSLFNEMRRDGVYPNDVTFVGLIHAITMKNLVEEGQMIHGVCVKTSFLSE 408

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           L +SNS+I MY+K   +  S  VF ++  + ++SW ++ISGY QNG  +EAL  F+    
Sbjct: 409 LNVSNSLITMYAKFESMSDSMKVFEELNYREIISWNSLISGYAQNGLWQEALQTFLSALM 468

Query: 346 EKTDSVDSITLVSILT--ASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
           E     +  T  S+L+  AS E  ++    + H    + G      V + L+  Y+K G+
Sbjct: 469 ESRP--NEFTFGSVLSSIASAEAISMRHGQRCHSHILKLGLNTNPIVSSALLDMYAKRGS 526

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           +  +  VF E   L++ V+W  II  +  +G  E  + L+  M   G  PDS T+L+++ 
Sbjct: 527 ICESLGVFSETP-LKNEVAWTAIISAHARHGDYEAVMNLFKDMEREGVKPDSITFLAVIT 585

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
           ACG  G+ + G  +FN M++++ ++PS EHY  +VD+L RAG L +A    G++  G G 
Sbjct: 586 ACGRKGMVDTGYQLFNSMVKDHLIEPSPEHYSSMVDMLGRAGRLKEAEEFVGQIPGGAGL 645

Query: 524 NIWRALLSGCVLH 536
           ++ ++LL  C +H
Sbjct: 646 SVLQSLLGACRIH 658



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 111/366 (30%), Positives = 191/366 (52%), Gaps = 15/366 (4%)

Query: 115 LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPN--AVTMLTVIRGCVALGSRALCELI 172
           + S N  +   +   L  +A+ LF      G V N   VT+  V++ C    S+  C+ I
Sbjct: 43  IASLNRSMLTALRRNLSLEALDLFKKQLQWGFVGNIDQVTVAIVLKACCG-DSKLGCQ-I 100

Query: 173 HGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYA 232
           H   I  G I  V+V NS+++MY      D A+ +F  +   D++SW  ++     F+ +
Sbjct: 101 HAFAISSGFISHVTVPNSLMNMYCKAGLFDRALVVFENLNNPDIVSWNTVLS---GFQRS 157

Query: 233 GDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSI 292
            DAL     M  + +  D V    +++  +       G QLH++++  GL  E+ + N++
Sbjct: 158 DDALNFALRMNFTGVAFDAVTCTTVLAFCSDHEGFIFGFQLHSRILKCGLDCEVFVGNAL 217

Query: 293 IAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNG-CAREALNQFIKMRQEKTDSV 351
           I MYS+C  L  +R VF+++  K LVSW A++SGY Q G    EA+  F++M +E    +
Sbjct: 218 ITMYSRCCRLVEARRVFDEMRNKDLVSWNAMLSGYAQEGNSGLEAILVFLEMLKEGM-KL 276

Query: 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVF 411
           D ++    ++A G     E+  Q+H +A + G+  +  V N LIS+YSKC +++ A +VF
Sbjct: 277 DHVSFTGAISACGHGKEFELGRQIHSLAVKIGYDTHVKVCNVLISTYSKCEDIEDAKLVF 336

Query: 412 EEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLT 471
           E +   R+VVSW T+I     +   E A +L+++M   G  P+  T++ +++A     L 
Sbjct: 337 ESI-IDRNVVSWTTMI-----SISEEDATSLFNEMRRDGVYPNDVTFVGLIHAITMKNLV 390

Query: 472 NDGLVI 477
            +G +I
Sbjct: 391 EEGQMI 396



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 87/182 (47%), Gaps = 35/182 (19%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ L++ Y K   + ++  +F+E+  + ++SW+ +I GY+ NG  +++++ F    LS L
Sbjct: 412 SNSLITMYAKFESMSDSMKVFEELNYREIISWNSLISGYAQNGLWQEALQTF----LSAL 467

Query: 68  L---PNSFTMVGVL--VAAAGLQNLELARSIHGLMVKFGLES---------DLF------ 107
           +   PN FT   VL  +A+A   ++   +  H  ++K GL +         D++      
Sbjct: 468 MESRPNEFTFGSVLSSIASAEAISMRHGQRCHSHILKLGLNTNPIVSSALLDMYAKRGSI 527

Query: 108 ---------EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                      LKN   V+  AI++    +  ++  + LF      G+ P+++T L VI 
Sbjct: 528 CESLGVFSETPLKNE--VAWTAIISAHARHGDYEAVMNLFKDMEREGVKPDSITFLAVIT 585

Query: 159 GC 160
            C
Sbjct: 586 AC 587



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 49/96 (51%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           +P  SS LL  Y K G I E+  +F E P KN V+W+ +I  ++ +G +E  M  F  M 
Sbjct: 510 NPIVSSALLDMYAKRGSICESLGVFSETPLKNEVAWTAIISAHARHGDYEAVMNLFKDME 569

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK 99
             G+ P+S T + V+ A      ++    +   MVK
Sbjct: 570 REGVKPDSITFLAVITACGRKGMVDTGYQLFNSMVK 605


>gi|225452922|ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
           [Vitis vinifera]
          Length = 594

 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 152/441 (34%), Positives = 237/441 (53%), Gaps = 20/441 (4%)

Query: 102 LESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
           L  ++F  +++P ++  N ++   + N     A  +F   + SG+  +  T   +++ C 
Sbjct: 67  LAVNVFNQIQDPDVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACS 126

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMY-SCLMD-LDAAIQIFREMECKDVISW 219
                 + E+IH    K+G  LD+ V NS++D Y  C +D + AA ++F  M  +D +SW
Sbjct: 127 GKVWVRVVEMIHAQVEKMGFCLDIFVPNSLIDSYFKCGLDGVAAARKVFEVMAERDTVSW 186

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAIL-GDLKRGKQLHAQVV 278
             M+G  V     G+A ++F EM +     DTV      S N IL G +K G+   A  +
Sbjct: 187 NSMIGGLVKVGELGEARRLFDEMPER----DTV------SWNTILDGYVKAGEMNAAFEL 236

Query: 279 LGGLQSELRLSNSIIAM-YSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
              + +   +S S + + YSK GD+D +R +F+++  K+LV WT +ISGY + G A++A+
Sbjct: 237 FEKMPARNVVSWSTMVLGYSKAGDMDMARILFDKMPVKNLVPWTIMISGYAEKGLAKDAI 296

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
           N + +M +E     D  T++SIL+A      L +  ++H       F     V N LI  
Sbjct: 297 NLYNQM-EEAGLKFDDGTVISILSACAVSGLLGLGKRVHASIERTRFKCSTPVSNALIDM 355

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           Y+KCG+++ A  +F  M   +DVVSWN II G  ++GHGE AL L+ +M   G VPD  T
Sbjct: 356 YAKCGSLENALSIFHGM-VRKDVVSWNAIIQGLAMHGHGEKALQLFSRMKGEGFVPDKVT 414

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL 517
           ++ +L AC HAG  ++GL  F+ M  +  V P  EHYGC+VDLL R G L +A  L   +
Sbjct: 415 FVGVLCACTHAGFVDEGLHYFHAMERDYGVPPEVEHYGCMVDLLGRGGRLKEAFRLVHSM 474

Query: 518 LEGMGPN--IWRALLSGCVLH 536
              + PN  IW  LL  C +H
Sbjct: 475 --PLEPNAIIWGTLLGACRMH 493



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 121/509 (23%), Positives = 234/509 (45%), Gaps = 41/509 (8%)

Query: 10  KLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLP 69
           KL++ +    ++  A N+F++I + +V+ ++ +I  +  N     +   F  M  SG+  
Sbjct: 54  KLIAAFSLCRQMTLAVNVFNQIQDPDVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCA 113

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPYL------------ 115
           ++FT   +L A +G   + +   IH  + K G   D+F    L + Y             
Sbjct: 114 DNFTYPFLLKACSGKVWVRVVEMIHAQVEKMGFCLDIFVPNSLIDSYFKCGLDGVAAARK 173

Query: 116 ----------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
                     VS N+++ G +      +A  LF+         + V+  T++ G V  G 
Sbjct: 174 VFEVMAERDTVSWNSMIGGLVKVGELGEARRLFDEMPER----DTVSWNTILDGYVKAGE 229

Query: 166 -RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
             A  EL   +  +     +V   ++++  YS   D+D A  +F +M  K+++ WT M+ 
Sbjct: 230 MNAAFELFEKMPAR-----NVVSWSTMVLGYSKAGDMDMARILFDKMPVKNLVPWTIMIS 284

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            + +   A DA+ ++ +M ++ +  D   +++++S  A+ G L  GK++HA +     + 
Sbjct: 285 GYAEKGLAKDAINLYNQMEEAGLKFDDGTVISILSACAVSGLLGLGKRVHASIERTRFKC 344

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
              +SN++I MY+KCG L+++ S+F+ +  K +VSW AII G   +G   +AL  F +M+
Sbjct: 345 STPVSNALIDMYAKCGSLENALSIFHGMVRKDVVSWNAIIQGLAMHGHGEKALQLFSRMK 404

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQ-LHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
            E     D +T V +L A      ++  L   H +  + G P       C++    + G 
Sbjct: 405 GEGF-VPDKVTFVGVLCACTHAGFVDEGLHYFHAMERDYGVPPEVEHYGCMVDLLGRGGR 463

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALA--LYHKMTETGEVPDSSTYLSI 461
           +  A+ +   M    + + W T++    +  H  T LA  ++ ++ ++ E+ DS     +
Sbjct: 464 LKEAFRLVHSMPLEPNAIIWGTLLGACRM--HSATGLAEEVFDRLVKS-ELSDSGNLSML 520

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPS 490
            N    AG  ++   I  +M   +  KPS
Sbjct: 521 SNIYAAAGDWDNFANIRLRMKSTSIQKPS 549



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 167/367 (45%), Gaps = 24/367 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D  + + ++    K G++ EA  LFDE+PE++ VSW+ ++ GY   G    + + F  M 
Sbjct: 182 DTVSWNSMIGGLVKVGELGEARRLFDEMPERDTVSWNTILDGYVKAGEMNAAFELFEKMP 241

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVA 123
              ++  S  ++G   + AG  ++++AR              LF+ +    LV    +++
Sbjct: 242 ARNVVSWSTMVLG--YSKAG--DMDMARI-------------LFDKMPVKNLVPWTIMIS 284

Query: 124 GFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLIL 183
           G+    L + A+ L+N    +GL  +  T+++++  C   G   L + +H    +     
Sbjct: 285 GYAEKGLAKDAINLYNQMEEAGLKFDDGTVISILSACAVSGLLGLGKRVHASIERTRFKC 344

Query: 184 DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMR 243
              V+N+++DMY+    L+ A+ IF  M  KDV+SW  ++       +   AL++F  M+
Sbjct: 345 STPVSNALIDMYAKCGSLENALSIFHGMVRKDVVSWNAIIQGLAMHGHGEKALQLFSRMK 404

Query: 244 KSRIICDTVALLNLISVNAILGDLKRG-KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDL 302
               + D V  + ++      G +  G    HA     G+  E+     ++ +  + G L
Sbjct: 405 GEGFVPDKVTFVGVLCACTHAGFVDEGLHYFHAMERDYGVPPEVEHYGCMVDLLGRGGRL 464

Query: 303 DSS-RSVFNQITEKSLVSWTAIISG---YVQNGCAREALNQFIKMRQEKTDSVDSITLVS 358
             + R V +   E + + W  ++     +   G A E  ++ +K   E +DS +   L +
Sbjct: 465 KEAFRLVHSMPLEPNAIIWGTLLGACRMHSATGLAEEVFDRLVK--SELSDSGNLSMLSN 522

Query: 359 ILTASGE 365
           I  A+G+
Sbjct: 523 IYAAAGD 529



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 80/269 (29%), Positives = 127/269 (47%), Gaps = 16/269 (5%)

Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISG 326
           L + KQ+HAQV+   L  E  +   +IA +S C  +  + +VFNQI +  ++ +  +I  
Sbjct: 30  LNQVKQIHAQVLKANLHRESFVGQKLIAAFSLCRQMTLAVNVFNQIQDPDVLLYNTLIRA 89

Query: 327 YVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPR 386
           +V+N     A + F +M Q+     D+ T   +L A      + +   +H    + GF  
Sbjct: 90  HVRNSEPLLAFSVFFEM-QDSGVCADNFTYPFLLKACSGKVWVRVVEMIHAQVEKMGFCL 148

Query: 387 YRSVQNCLISSYSKCG--NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH 444
              V N LI SY KCG   V  A  VFE M   RD VSWN++I G    G    A  L+ 
Sbjct: 149 DIFVPNSLIDSYFKCGLDGVAAARKVFEVMA-ERDTVSWNSMIGGLVKVGELGEARRLFD 207

Query: 445 KMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARA 504
           +M E     D+ ++ +IL+    AG  N    +F +M   N V      +  +V   ++A
Sbjct: 208 EMPER----DTVSWNTILDGYVKAGEMNAAFELFEKMPARNVVS-----WSTMVLGYSKA 258

Query: 505 GCLSDASGLAGKL-LEGMGPNIWRALLSG 532
           G +  A  L  K+ ++ + P  W  ++SG
Sbjct: 259 GDMDMARILFDKMPVKNLVP--WTIMISG 285



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 79/179 (44%), Gaps = 16/179 (8%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C  P  S+ L+  Y K G ++ A ++F  +  K+VVSW+ +I G +++G  EK+++ FS 
Sbjct: 344 CSTPV-SNALIDMYAKCGSLENALSIFHGMVRKDVVSWNAIIQGLAMHGHGEKALQLFSR 402

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAI 121
           M   G +P+  T VGVL A             H   V  GL    F  ++  Y V     
Sbjct: 403 MKGEGFVPDKVTFVGVLCACT-----------HAGFVDEGLH--YFHAMERDYGVPPEVE 449

Query: 122 VAGFINNKLFQQAVL--LFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIK 178
             G + + L +   L   F       L PNA+   T++  C    +  L E +    +K
Sbjct: 450 HYGCMVDLLGRGGRLKEAFRLVHSMPLEPNAIIWGTLLGACRMHSATGLAEEVFDRLVK 508


>gi|302810303|ref|XP_002986843.1| hypothetical protein SELMODRAFT_124816 [Selaginella moellendorffii]
 gi|300145497|gb|EFJ12173.1| hypothetical protein SELMODRAFT_124816 [Selaginella moellendorffii]
          Length = 845

 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 160/586 (27%), Positives = 297/586 (50%), Gaps = 49/586 (8%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTM 74
           + K G +  A ++F  +   +V SW+ ++   + +GF  ++++ F  M  S +  +  T+
Sbjct: 269 FSKCGCLDRAHDVFHRMKRWDVKSWNAMVAALAQHGFSSEALELFRRMP-SEVAVDKTTL 327

Query: 75  VGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------------FEGLKN 112
           V  L   A  ++LE  +SIH  + + GLE+D+                      F+G+  
Sbjct: 328 VIALSTCAAPESLEDGKSIHSRVARLGLETDVVAGTALVTMYSRCGDLGEARRVFDGILG 387

Query: 113 PYLVSCNAIVAGFINNK-LFQQAVLLFNFFRGSGLVPNAVTMLTVIRG--CVALGSRALC 169
             +VS N ++A +  ++ L  +A+ +F      G+ P   T L V+    C ++G +   
Sbjct: 388 KNVVSWNNMIAAYGRDESLHSRALEIFRLMLLDGVRPTRTTALNVVSAVECQSVGKQ--- 444

Query: 170 ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDF 229
             +HG  +  GL  D  + +++++MY     L  A ++F ++  +DV +W  ++G+ V  
Sbjct: 445 --LHGWIVDTGLYSDSFIGSALVNMYERTGSLGDARRVFEKIIERDVFAWNAIVGVCVGH 502

Query: 230 EYAGDALKIFREMRKSRIICDTVALLNLISVNAILGD-LKRGKQLHAQVVLGGLQSELRL 288
               +AL+ F  M       +    L  ++++A+  D +  G++LH  +   GL+++  +
Sbjct: 503 GQPREALEWFSRMLLEGASGNRATFL--LALSAVSPDRVSYGRKLHGLIAESGLEADNNV 560

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
           +N++I+MY++C  L+ +R+ F+++ +KS+VSWT++I+  V  G  +EA++ F +M  E  
Sbjct: 561 ANALISMYARCKSLEDARNTFDRLEDKSIVSWTSVIAACVDLGSCQEAIDLFQRMELEP- 619

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
              D +T  ++L A   ++A      +H  A E G      V   LI  +SK GN+  A 
Sbjct: 620 ---DRVTFTTVLEACTIVSAHREGKLVHSRARELGLESNVFVATALIHMHSKFGNLGEAR 676

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
            +FE +     +  WN ++ GY   GH ++ +  +H M + G  PD  T+L++++AC HA
Sbjct: 677 RIFEAVE-APTLACWNAMLGGYAQTGHSQSVIDFFHAMQQRGVAPDHITFLAVVSACSHA 735

Query: 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM--GPN-- 524
           GL   G   F  M  +  V    E YGC++DLLARAG L +A       L+GM  GP+  
Sbjct: 736 GLVEKGARTFASMGPDYGVGHGLEDYGCLIDLLARAGQLEEAY----DFLQGMPCGPSDV 791

Query: 525 IWRALLSGCVLHVGRFQDAEALRSGSQKK--GIIKIPGISFLNSTS 568
            W+ LL+ C +     + + A RS  +++  G      +S+++S +
Sbjct: 792 TWKTLLAACKIQGDVRRGSAAARSVIEREPYGAAAFVELSYMSSIA 837



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 144/571 (25%), Positives = 270/571 (47%), Gaps = 53/571 (9%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  + ++  + K   I +A  +F+++ ++++V W+ ++  +  +   +++   F  M
Sbjct: 61  LDGFFGASVVRMFIKCRSIHDASRVFEQMLDRSMVLWTSMVTAFVDDEDVDRAWLFFFRM 120

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------- 106
            L G+LP+  T + +L A   L   EL   +H L+V   LESD+                
Sbjct: 121 QLEGVLPDRVTFISILNACESLAQGEL---VHRLIVDKNLESDVVIGNALMKMLAKCYDL 177

Query: 107 ------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                 F+ +    ++S   +V  +  N    +A   +      G+VPN +T L V+  C
Sbjct: 178 DGAARFFQRMPRRDVISWTGMVTAYARNGHIAEAFGYYLRMLLEGVVPNNITFLAVLAAC 237

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
               S    +L++G  ++     D  V N+ ++M+S    LD A  +F  M+  DV SW 
Sbjct: 238 ---SSARDADLVYGNVVEAEWETDTMVANASINMFSKCGCLDRAHDVFHRMKRWDVKSWN 294

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+       ++ +AL++FR M  S +  D   L+  +S  A    L+ GK +H++V   
Sbjct: 295 AMVAALAQHGFSSEALELFRRM-PSEVAVDKTTLVIALSTCAAPESLEDGKSIHSRVARL 353

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN-GCAREALNQ 339
           GL++++    +++ MYS+CGDL  +R VF+ I  K++VSW  +I+ Y ++      AL  
Sbjct: 354 GLETDVVAGTALVTMYSRCGDLGEARRVFDGILGKNVVSWNNMIAAYGRDESLHSRALEI 413

Query: 340 FIKM-----RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
           F  M     R  +T +++ ++ V   +         +  QLHG   + G      + + L
Sbjct: 414 FRLMLLDGVRPTRTTALNVVSAVECQS---------VGKQLHGWIVDTGLYSDSFIGSAL 464

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGET--ALALYHKMTETGEV 452
           ++ Y + G++  A  VFE++   RDV +WN I+ G  V GHG+   AL  + +M   G  
Sbjct: 465 VNMYERTGSLGDARRVFEKI-IERDVFAWNAIV-GVCV-GHGQPREALEWFSRMLLEGAS 521

Query: 453 PDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASG 512
            + +T+L  L+A     ++    +  + +I E+ ++        ++ + AR   L DA  
Sbjct: 522 GNRATFLLALSAVSPDRVSYGRKL--HGLIAESGLEADNNVANALISMYARCKSLEDARN 579

Query: 513 LAGKLLEGMGPNIWRALLSGCVLHVGRFQDA 543
              + LE      W ++++ CV  +G  Q+A
Sbjct: 580 TFDR-LEDKSIVSWTSVIAACV-DLGSCQEA 608



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 129/483 (26%), Positives = 232/483 (48%), Gaps = 36/483 (7%)

Query: 24  AENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAG 83
           A   F  +P ++V+SW+ ++  Y+ NG   ++   +  M+L G++PN+ T + VL A + 
Sbjct: 180 AARFFQRMPRRDVISWTGMVTAYARNGHIAEAFGYYLRMLLEGVVPNNITFLAVLAACSS 239

Query: 84  LQNLELARSIHGLMVKFGLES----------------------DLFEGLKNPYLVSCNAI 121
            ++ +L   ++G +V+   E+                      D+F  +K   + S NA+
Sbjct: 240 ARDADL---VYGNVVEAEWETDTMVANASINMFSKCGCLDRAHDVFHRMKRWDVKSWNAM 296

Query: 122 VAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGL 181
           VA    +    +A+ LF     S +  +  T++  +  C A  S    + IH    +LGL
Sbjct: 297 VAALAQHGFSSEALELFRRM-PSEVAVDKTTLVIALSTCAAPESLEDGKSIHSRVARLGL 355

Query: 182 ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF-VDFEYAGDALKIFR 240
             DV    +++ MYS   DL  A ++F  +  K+V+SW  M+  +  D      AL+IFR
Sbjct: 356 ETDVVAGTALVTMYSRCGDLGEARRVFDGILGKNVVSWNNMIAAYGRDESLHSRALEIFR 415

Query: 241 EMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCG 300
            M    +       LN++S    +     GKQLH  +V  GL S+  + ++++ MY + G
Sbjct: 416 LMLLDGVRPTRTTALNVVSA---VECQSVGKQLHGWIVDTGLYSDSFIGSALVNMYERTG 472

Query: 301 DLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSIL 360
            L  +R VF +I E+ + +W AI+   V +G  REAL  F +M  E      +  L+++ 
Sbjct: 473 SLGDARRVFEKIIERDVFAWNAIVGVCVGHGQPREALEWFSRMLLEGASGNRATFLLALS 532

Query: 361 TASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDV 420
             S +   +    +LHG+  E+G     +V N LIS Y++C +++ A   F+ +   + +
Sbjct: 533 AVSPD--RVSYGRKLHGLIAESGLEADNNVANALISMYARCKSLEDARNTFDRLED-KSI 589

Query: 421 VSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQ 480
           VSW ++I      G  + A+ L+ +M      PD  T+ ++L AC       +G ++ ++
Sbjct: 590 VSWTSVIAACVDLGSCQEAIDLFQRMELE---PDRVTFTTVLEACTIVSAHREGKLVHSR 646

Query: 481 MIE 483
             E
Sbjct: 647 ARE 649



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 127/460 (27%), Positives = 225/460 (48%), Gaps = 31/460 (6%)

Query: 91  RSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNA 150
           RSIH         S +FE + +  +V   ++V  F++++   +A L F   +  G++P+ 
Sbjct: 77  RSIHD-------ASRVFEQMLDRSMVLWTSMVTAFVDDEDVDRAWLFFFRMQLEGVLPDR 129

Query: 151 VTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFRE 210
           VT ++++  C +L   A  EL+H L +   L  DV + N+++ M +   DLD A + F+ 
Sbjct: 130 VTFISILNACESL---AQGELVHRLIVDKNLESDVVIGNALMKMLAKCYDLDGAARFFQR 186

Query: 211 MECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG 270
           M  +DVISWT M+  +    +  +A   +  M    ++ + +  L   +V A     +  
Sbjct: 187 MPRRDVISWTGMVTAYARNGHIAEAFGYYLRMLLEGVVPNNITFL---AVLAACSSARDA 243

Query: 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
             ++  VV    +++  ++N+ I M+SKCG LD +  VF+++    + SW A+++   Q+
Sbjct: 244 DLVYGNVVEAEWETDTMVANASINMFSKCGCLDRAHDVFHRMKRWDVKSWNAMVAALAQH 303

Query: 331 GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV 390
           G + EAL  F +M  E   +VD  TLV  L+      +LE    +H      G       
Sbjct: 304 GFSSEALELFRRMPSEV--AVDKTTLVIALSTCAAPESLEDGKSIHSRVARLGLETDVVA 361

Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGFL-RDVVSWNTIIYGYGVNGHGET-ALALYHKMTE 448
              L++ YS+CG++  A  VF+  G L ++VVSWN +I  YG +    + AL ++  M  
Sbjct: 362 GTALVTMYSRCGDLGEARRVFD--GILGKNVVSWNNMIAAYGRDESLHSRALEIFRLMLL 419

Query: 449 TGEVPDSSTYLSILNA--CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGC 506
            G  P  +T L++++A  C   G    G ++   +  ++ +  +      +V++  R G 
Sbjct: 420 DGVRPTRTTALNVVSAVECQSVGKQLHGWIVDTGLYSDSFIGSA------LVNMYERTGS 473

Query: 507 LSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEAL 546
           L DA  +  K++E      W A++  C   VG  Q  EAL
Sbjct: 474 LGDARRVFEKIIE-RDVFAWNAIVGVC---VGHGQPREAL 509



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 152/302 (50%), Gaps = 9/302 (2%)

Query: 180 GLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIF 239
           G++LD     SV+ M+     +  A ++F +M  + ++ WT M+  FVD E    A   F
Sbjct: 58  GILLDGFFGASVVRMFIKCRSIHDASRVFEQMLDRSMVLWTSMVTAFVDDEDVDRAWLFF 117

Query: 240 REMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKC 299
             M+   ++ D V  +++++       L +G+ +H  +V   L+S++ + N+++ M +KC
Sbjct: 118 FRMQLEGVLPDRVTFISILNA---CESLAQGELVHRLIVDKNLESDVVIGNALMKMLAKC 174

Query: 300 GDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSI 359
            DLD +   F ++  + ++SWT +++ Y +NG   EA   +++M  E     ++IT +++
Sbjct: 175 YDLDGAARFFQRMPRRDVISWTGMVTAYARNGHIAEAFGYYLRMLLEGV-VPNNITFLAV 233

Query: 360 LTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRD 419
           L A       ++   ++G   EA +     V N  I+ +SKCG +D A+ VF  M    D
Sbjct: 234 LAACSSARDADL---VYGNVVEAEWETDTMVANASINMFSKCGCLDRAHDVFHRMKRW-D 289

Query: 420 VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFN 479
           V SWN ++     +G    AL L+ +M     V D +T +  L+ C       DG  I +
Sbjct: 290 VKSWNAMVAALAQHGFSSEALELFRRMPSEVAV-DKTTLVIALSTCAAPESLEDGKSIHS 348

Query: 480 QM 481
           ++
Sbjct: 349 RV 350



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/359 (22%), Positives = 168/359 (46%), Gaps = 33/359 (9%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  S L++ Y ++G + +A  +F++I E++V +W+ ++     +G   ++++ FS M+
Sbjct: 457 DSFIGSALVNMYERTGSLGDARRVFEKIIERDVFAWNAIVGVCVGHGQPREALEWFSRML 516

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
           L G   N  T + + ++A     +   R +HGL+ + GLE+D                  
Sbjct: 517 LEGASGNRATFL-LALSAVSPDRVSYGRKLHGLIAESGLEADNNVANALISMYARCKSLE 575

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                F+ L++  +VS  +++A  ++    Q+A+ LF       L P+ VT  TV+  C 
Sbjct: 576 DARNTFDRLEDKSIVSWTSVIAACVDLGSCQEAIDLFQRME---LEPDRVTFTTVLEACT 632

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            + +    +L+H    +LGL  +V V  +++ M+S   +L  A +IF  +E   +  W  
Sbjct: 633 IVSAHREGKLVHSRARELGLESNVFVATALIHMHSKFGNLGEARRIFEAVEAPTLACWNA 692

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG- 280
           M+G +    ++   +  F  M++  +  D +  L ++S  +  G +++G +  A +    
Sbjct: 693 MLGGYAQTGHSQSVIDFFHAMQQRGVAPDHITFLAVVSACSHAGLVEKGARTFASMGPDY 752

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAI-----ISGYVQNGCA 333
           G+   L     +I + ++ G L+ +      +    S V+W  +     I G V+ G A
Sbjct: 753 GVGHGLEDYGCLIDLLARAGQLEEAYDFLQGMPCGPSDVTWKTLLAACKIQGDVRRGSA 811



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 136/287 (47%), Gaps = 10/287 (3%)

Query: 250 DTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVF 309
           D    L L+++ A    L     +++ +   G+  +     S++ M+ KC  +  +  VF
Sbjct: 27  DHSKFLKLVNLCAERKLLHEATSVYSSIQAQGILLDGFFGASVVRMFIKCRSIHDASRVF 86

Query: 310 NQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAAL 369
            Q+ ++S+V WT++++ +V +     A   F +M+ E     D +T +SIL A   LA  
Sbjct: 87  EQMLDRSMVLWTSMVTAFVDDEDVDRAWLFFFRMQLEGVLP-DRVTFISILNACESLAQG 145

Query: 370 EICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYG 429
           E+   +H +  +        + N L+   +KC ++D A   F+ M   RDV+SW  ++  
Sbjct: 146 EL---VHRLIVDKNLESDVVIGNALMKMLAKCYDLDGAARFFQRMP-RRDVISWTGMVTA 201

Query: 430 YGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKP 489
           Y  NGH   A   Y +M   G VP++ T+L++L AC  A    D  +++  ++E  + + 
Sbjct: 202 YARNGHIAEAFGYYLRMLLEGVVPNNITFLAVLAACSSA---RDADLVYGNVVEA-EWET 257

Query: 490 SQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
                   +++ ++ GCL  A  +  + ++      W A+++    H
Sbjct: 258 DTMVANASINMFSKCGCLDRAHDVFHR-MKRWDVKSWNAMVAALAQH 303


>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
          Length = 1072

 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 153/542 (28%), Positives = 274/542 (50%), Gaps = 49/542 (9%)

Query: 5   PYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML 64
           P  S+KL+ +Y + G  + ++ +FD  P+ +   W ++I  Y   GF E+++  +  M+ 
Sbjct: 380 PPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGGFFEEAVSLYHEMVY 439

Query: 65  SGLLP-NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVA 123
                 ++F    VL A +G  +L +           G      EGL             
Sbjct: 440 QDQTQISNFVFPSVLKACSGFGDLSVG----------GKNGQASEGLD------------ 477

Query: 124 GFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCEL--------IHGL 175
                 +F Q +          + P++VTML+V   C  LGS  L  L        +HG 
Sbjct: 478 ------MFSQMI-------SEAVEPDSVTMLSVTEACSELGSLRLGRLGRVKEGRSVHGF 524

Query: 176 TIKLGLILDVS-VNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGD 234
            I+  +  ++  +  +++++Y+   +L    ++F  ++ K ++SW  ++ +F       +
Sbjct: 525 VIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEE 584

Query: 235 ALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIA 294
           AL +F +M+   ++ D+ +L + +S    +   + G Q+H  ++  G  ++  + N++I 
Sbjct: 585 ALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTGNFNDF-VQNALID 643

Query: 295 MYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSI 354
           MY+KCG + S+  +F +I EKSLV+W ++I G+ QNG + EA+  F +M       +D +
Sbjct: 644 MYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCV-KMDKL 702

Query: 355 TLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM 414
           T +S++ A   L  LE    +H      G  +   +   L   YSKCG + +A+ VF+ M
Sbjct: 703 TFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRM 762

Query: 415 GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDG 474
              R +VSW+ +I GYG++G     ++L+++M  +G  P+  T++ IL+AC HAG   +G
Sbjct: 763 S-ERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEG 821

Query: 475 LVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCV 534
            + FN M  E  V+P  +H+ C+VDLL+RAG L+ A  +   L      +IW ALL+GC 
Sbjct: 822 KLYFNSM-SEFGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLNGCR 880

Query: 535 LH 536
           +H
Sbjct: 881 IH 882



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 124/302 (41%), Gaps = 58/302 (19%)

Query: 272 QLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYV--- 328
           QLHA + + GL      S  +I  Y++ G  +SS+ VF+   +     W  +I  YV   
Sbjct: 366 QLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGG 425

Query: 329 ------------------------------------------QNGCAREALNQFIKMRQE 346
                                                     +NG A E L+ F +M  E
Sbjct: 426 FFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKNGQASEGLDMFSQMISE 485

Query: 347 KTDSVDSITLVSILTASGELAALEI--------CLQLHGIAFEAGF-PRYRSVQNCLISS 397
             +  DS+T++S+  A  EL +L +           +HG        P    +   L+  
Sbjct: 486 AVEP-DSVTMLSVTEACSELGSLRLGRLGRVKEGRSVHGFVIRRAMDPELDFLGPALMEL 544

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           Y+  GN+   + VFE +   + ++SWNT+I  +  NG  E AL L+ +M   G +PDS +
Sbjct: 545 YADTGNLRDCHKVFETIK-EKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYS 603

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL 517
             S L+ACG    +  G  I   +I+        ++   ++D+ A+ G +  A+ +  K+
Sbjct: 604 LASSLSACGTISFSQLGAQIHGYIIKTGNFNDFVQN--ALIDMYAKCGFVHSANKMFEKI 661

Query: 518 LE 519
            E
Sbjct: 662 KE 663



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 57/100 (57%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + L   Y K G+++ A  +FD + E+++VSWS++I GY ++G    ++  F+ M+
Sbjct: 735 DSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQML 794

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE 103
            SG+ PN  T + +L A +    +E  +     M +FG+E
Sbjct: 795 GSGIKPNDITFMHILSACSHAGAVEEGKLYFNSMSEFGVE 834



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 74/171 (43%), Gaps = 14/171 (8%)

Query: 360 LTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRD 419
           LT+    A      QLH   F  G  R+      LI SY++ G  + +  VF+      D
Sbjct: 352 LTSHKRCATSTTLTQLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFP-KPD 410

Query: 420 VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS-TYLSILNAC---------GHAG 469
              W  +I  Y   G  E A++LYH+M    +   S+  + S+L AC         G  G
Sbjct: 411 SFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKNG 470

Query: 470 LTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
             ++GL +F+QMI E  V+P       V +  +  G L    G  G++ EG
Sbjct: 471 QASEGLDMFSQMISE-AVEPDSVTMLSVTEACSELGSLR--LGRLGRVKEG 518


>gi|413937268|gb|AFW71819.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 830

 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 158/552 (28%), Positives = 267/552 (48%), Gaps = 30/552 (5%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + L+  Y     + +   +F+ + ++NVV+W+ ++ GY   G     M  F  M   G+ 
Sbjct: 95  TSLVDMYMNWHSVLDGRKVFEGMLKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGVW 154

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY------------ 114
           PN FT   VL   A    ++L + +H   +KFG  S +F    L N Y            
Sbjct: 155 PNPFTFSSVLSMVASQGMVDLGQHVHAQSIKFGCCSTVFVCNSLMNMYAKCGLVEEARVV 214

Query: 115 --------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
                   +VS N ++AG + N    +A+ LF+  R S  +    T  TVI  C  L   
Sbjct: 215 FCRMETRDMVSWNTLMAGLVLNGRDLEALQLFHDSRSSITMLTESTYSTVINLCANLKHL 274

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME-CKDVISWTRMMGL 225
            L   +H   +K G     +V  +++D Y+    LD A+ +F  M   ++V+SWT M+  
Sbjct: 275 GLARQLHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKALDVFLLMSGSQNVVSWTAMIDG 334

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
            +       A  +F  MR+  +  + +    +++V+    +     Q+HAQV+    +  
Sbjct: 335 CIQNGDIPLAAALFSRMREDGVAPNDLTYSTILTVS----EASFPPQIHAQVIKTNYECT 390

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
             +  +++  YSK    + + S+F  I +K +VSW+A+++ Y Q G    A N FIKM  
Sbjct: 391 PTVGTALMVSYSKLCSTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDCNGATNAFIKMTM 450

Query: 346 EKTDSVDSITLVSILTASGELAA-LEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
                 +  T+ S + A    AA +++  Q H I+ +        V + L+S Y++ G++
Sbjct: 451 HGLKP-NEFTISSAIDACASPAAGVDLGRQFHAISIKHRCHDALCVSSALVSMYARKGSI 509

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           + A  VFE     RD++SWN+++ GY  +G+ + AL ++ +M   G   D  T+LS++  
Sbjct: 510 ENAQCVFERQTD-RDLLSWNSMLSGYAQHGYSQKALDVFRQMEVEGIDMDGLTFLSVIMG 568

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C HAGL  +G   F+ M+ +  + P+ +HY C+VDL +RAG L +   L   +    GP 
Sbjct: 569 CAHAGLVEEGQQYFDLMVRDYGITPTMDHYACMVDLYSRAGKLDETMSLIEGMPFPAGPT 628

Query: 525 IWRALLSGCVLH 536
           IWRALL  C +H
Sbjct: 629 IWRALLGACRVH 640



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 119/493 (24%), Positives = 226/493 (45%), Gaps = 31/493 (6%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C   +  + L++ Y K G ++EA  +F  +  +++VSW+ ++ G  +NG   ++++ F  
Sbjct: 189 CSTVFVCNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNTLMAGLVLNGRDLEALQLFHD 248

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES--DLFEGLKNPY----- 114
              S  +    T   V+   A L++L LAR +H  ++K G  S  ++   L + Y     
Sbjct: 249 SRSSITMLTESTYSTVINLCANLKHLGLARQLHSSVLKHGFHSYGNVMTALMDAYNKAGQ 308

Query: 115 ----------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                           +VS  A++ G I N     A  LF+  R  G+ PN +T  T++ 
Sbjct: 309 LDKALDVFLLMSGSQNVVSWTAMIDGCIQNGDIPLAAALFSRMREDGVAPNDLTYSTIL- 367

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
               +   +    IH   IK       +V  +++  YS L   + A+ IF+ ++ KDV+S
Sbjct: 368 ---TVSEASFPPQIHAQVIKTNYECTPTVGTALMVSYSKLCSTEEALSIFKMIDQKDVVS 424

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNA-ILGDLKRGKQLHAQV 277
           W+ M+  +        A   F +M    +  +   + + I   A     +  G+Q HA  
Sbjct: 425 WSAMLTCYAQAGDCNGATNAFIKMTMHGLKPNEFTISSAIDACASPAAGVDLGRQFHAIS 484

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           +       L +S+++++MY++ G +++++ VF + T++ L+SW +++SGY Q+G +++AL
Sbjct: 485 IKHRCHDALCVSSALVSMYARKGSIENAQCVFERQTDRDLLSWNSMLSGYAQHGYSQKAL 544

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAF-EAGFPRYRSVQNCLIS 396
           + F +M  E  D +D +T +S++        +E   Q   +   + G         C++ 
Sbjct: 545 DVFRQMEVEGID-MDGLTFLSVIMGCAHAGLVEEGQQYFDLMVRDYGITPTMDHYACMVD 603

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
            YS+ G +D    + E M F      W  ++    V+ + E       K+    E  DS+
Sbjct: 604 LYSRAGKLDETMSLIEGMPFPAGPTIWRALLGACRVHKNVELGKLAAEKLLSL-EPLDSA 662

Query: 457 TYLSILNACGHAG 469
           TY+ + N    AG
Sbjct: 663 TYVLLSNIYSAAG 675



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 94/310 (30%), Positives = 157/310 (50%), Gaps = 17/310 (5%)

Query: 253 ALLNLISVNAILGDLKRGKQLHAQVV-LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQ 311
           ALL +I +   + D   GKQLHA  V  G    ++R+  S++ MY     +   R VF  
Sbjct: 57  ALLGIIKICGSVPDRVLGKQLHALCVRCGHDHGDIRVGTSLVDMYMNWHSVLDGRKVFEG 116

Query: 312 ITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEI 371
           + ++++V+WT++++GY+Q G   + ++ F +MR E     +  T  S+L+       +++
Sbjct: 117 MLKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGV-WPNPFTFSSVLSMVASQGMVDL 175

Query: 372 CLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYG 431
              +H  + + G      V N L++ Y+KCG V+ A +VF  M   RD+VSWNT++ G  
Sbjct: 176 GQHVHAQSIKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCRME-TRDMVSWNTLMAGLV 234

Query: 432 VNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQ 491
           +NG    AL L+H    +  +   STY +++N C  A L + GL    + +  + +K   
Sbjct: 235 LNGRDLEALQLFHDSRSSITMLTESTYSTVINLC--ANLKHLGLA---RQLHSSVLKHGF 289

Query: 492 EHYGCV----VDLLARAGCLSDASGLAGKLLEGMGPNI--WRALLSGCVLHVGRFQDAEA 545
             YG V    +D   +AG L  A  L   LL     N+  W A++ GC+ + G    A A
Sbjct: 290 HSYGNVMTALMDAYNKAGQLDKA--LDVFLLMSGSQNVVSWTAMIDGCIQN-GDIPLAAA 346

Query: 546 LRSGSQKKGI 555
           L S  ++ G+
Sbjct: 347 LFSRMREDGV 356


>gi|20160775|dbj|BAB89716.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|125573261|gb|EAZ14776.1| hypothetical protein OsJ_04704 [Oryza sativa Japonica Group]
          Length = 916

 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 160/553 (28%), Positives = 276/553 (49%), Gaps = 33/553 (5%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ L++ Y++ G  + AE +F     KN+V+W+ +I G   N    ++M  F  M  S  
Sbjct: 305 ANSLITFYYELGFPEAAEEVFLSTSNKNLVTWNAMIKGLVENDRVNEAMCMFQEMR-SKN 363

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG--LES--------DLFEGLKNPY--- 114
            P+  T+V ++ A      L   + +HG ++K G   E         DL+    +P    
Sbjct: 364 QPDVATLVTIISACGDHGLLPEGKEVHGYIIKKGHIYEECSVGNSLLDLYMKCNDPSTAR 423

Query: 115 ----------LVSCNAIVAGFI-NNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
                     L+S N +++G+  N+ L ++A  +F      GL     T++ VI  C   
Sbjct: 424 ILFRTMPMRDLISWNTMISGYSRNDSLGEEAKAMFKGLLSEGLSCTLSTVVAVIPSCFCP 483

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM-ECKDVISW-TR 221
                 + +H   +K G +  VS  NS++ MY C  D  AA  +   +    D+ISW T 
Sbjct: 484 QDLNFGKSVHSFILKYGFLTGVSAANSLIHMYICCGDSLAAFSLLESITPISDIISWNTA 543

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRII-CDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
           ++G   +  Y GDAL+ F+ M  +  +  D++ L++++SV   L     GK +H   +  
Sbjct: 544 IVGCVQNGLY-GDALEAFQFMHSTLTLNPDSITLVSVLSVCGNLKLQSLGKSIHCMALKR 602

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
            ++  LR+ N+++ MY + GD +S+  +F+ +  ++L SW  +ISG+ QN    E L  F
Sbjct: 603 LIEFNLRVKNALLTMYFRFGDTESAELIFSSLVGRNLCSWNCMISGFAQNN---EGLRAF 659

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
              ++ +    + I++V I+ A  +L  L     +HG     G      +   L+  YSK
Sbjct: 660 QFYKKMEDFEPNEISIVGIICACTQLGDLRQGKNIHGHVVRFGLQTNVFISASLVDMYSK 719

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CG +D++  VFE     + +  WN++I  +G +G G  ++ ++ KM  +G     ST+++
Sbjct: 720 CGRLDISIRVFESSA-EKSIACWNSMISAFGFHGLGLKSIEIFWKMNNSGVKATRSTFIA 778

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           +L+AC H+GLT++GL  ++ MIE   + P+ EH+ CVVD+L RAG L +A      L   
Sbjct: 779 LLSACSHSGLTDEGLKYYHLMIEHFGIIPTPEHHVCVVDMLGRAGRLQEAHKFVESLPSK 838

Query: 521 MGPNIWRALLSGC 533
               +W ALLS C
Sbjct: 839 QAHGVWGALLSAC 851



 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 141/500 (28%), Positives = 233/500 (46%), Gaps = 31/500 (6%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+  Y K G    +E +F  +P ++  SW+ ++ G   NG  E S   F  M+ S    +
Sbjct: 205 LMDMYAKCGDFYSSEVVFQRMPYRDTTSWNSMVSGSLFNGLAEISAYYFKEMVRSSFQAD 264

Query: 71  SFTMVGVLVAAAGLQNL-ELARSIHGLMVKFGLE-----------------------SDL 106
             ++  VL A + L++L     S+H  ++K G E                        ++
Sbjct: 265 EVSLSCVLSACSHLKDLFSFGESVHSSVIKLGYEDTTSSVANSLITFYYELGFPEAAEEV 324

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           F    N  LV+ NA++ G + N    +A+ +F   R     P+  T++T+I  C   G  
Sbjct: 325 FLSTSNKNLVTWNAMIKGLVENDRVNEAMCMFQEMRSKN-QPDVATLVTIISACGDHGLL 383

Query: 167 ALCELIHGLTIKLGLIL-DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
              + +HG  IK G I  + SV NS+LD+Y    D   A  +FR M  +D+ISW  M+  
Sbjct: 384 PEGKEVHGYIIKKGHIYEECSVGNSLLDLYMKCNDPSTARILFRTMPMRDLISWNTMISG 443

Query: 226 FVDFEYAGDALK-IFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
           +   +  G+  K +F+ +    + C    ++ +I       DL  GK +H+ ++  G  +
Sbjct: 444 YSRNDSLGEEAKAMFKGLLSEGLSCTLSTVVAVIPSCFCPQDLNFGKSVHSFILKYGFLT 503

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKS-LVSWTAIISGYVQNGCAREALNQFIKM 343
            +  +NS+I MY  CGD  ++ S+   IT  S ++SW   I G VQNG   +AL  F  M
Sbjct: 504 GVSAANSLIHMYICCGDSLAAFSLLESITPISDIISWNTAIVGCVQNGLYGDALEAFQFM 563

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
               T + DSITLVS+L+  G L    +   +H +A +        V+N L++ Y + G+
Sbjct: 564 HSTLTLNPDSITLVSVLSVCGNLKLQSLGKSIHCMALKRLIEFNLRVKNALLTMYFRFGD 623

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
            + A ++F  +   R++ SWN +I G+  N  G  A   Y KM +    P+  + + I+ 
Sbjct: 624 TESAELIFSSL-VGRNLCSWNCMISGFAQNNEGLRAFQFYKKMEDFE--PNEISIVGIIC 680

Query: 464 ACGHAGLTNDGLVIFNQMIE 483
           AC   G    G  I   ++ 
Sbjct: 681 ACTQLGDLRQGKNIHGHVVR 700



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 135/513 (26%), Positives = 239/513 (46%), Gaps = 31/513 (6%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +DP   + +++ Y +   +  A  +FDE    +++ W+  I   ++N  +  ++  F  M
Sbjct: 96  LDPPVRTSVITAYSRVRDVCSALQVFDEAAAPDLILWNAAISALTLNCRYGDAVVLFRWM 155

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------- 106
           +    + +S +MV +L  A+  ++LE   + HG+ +K  L++DL                
Sbjct: 156 VDVLGVIDSTSMVIMLSGASRARSLEHGIAFHGMALKRCLDTDLSLWNTLMDMYAKCGDF 215

Query: 107 ------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                 F+ +      S N++V+G + N L + +   F     S    + V++  V+  C
Sbjct: 216 YSSEVVFQRMPYRDTTSWNSMVSGSLFNGLAEISAYYFKEMVRSSFQADEVSLSCVLSAC 275

Query: 161 VALGSR-ALCELIHGLTIKLGL-ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
             L    +  E +H   IKLG      SV NS++  Y  L   +AA ++F     K++++
Sbjct: 276 SHLKDLFSFGESVHSSVIKLGYEDTTSSVANSLITFYYELGFPEAAEEVFLSTSNKNLVT 335

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           W  M+   V+ +   +A+ +F+EMR S+   D   L+ +IS     G L  GK++H  ++
Sbjct: 336 WNAMIKGLVENDRVNEAMCMFQEMR-SKNQPDVATLVTIISACGDHGLLPEGKEVHGYII 394

Query: 279 LGG-LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
             G +  E  + NS++ +Y KC D  ++R +F  +  + L+SW  +ISGY +N    E  
Sbjct: 395 KKGHIYEECSVGNSLLDLYMKCNDPSTARILFRTMPMRDLISWNTMISGYSRNDSLGEEA 454

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
               K    +  S    T+V+++ +      L     +H    + GF    S  N LI  
Sbjct: 455 KAMFKGLLSEGLSCTLSTVVAVIPSCFCPQDLNFGKSVHSFILKYGFLTGVSAANSLIHM 514

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV-PDSS 456
           Y  CG+   A+ + E +  + D++SWNT I G   NG    AL  +  M  T  + PDS 
Sbjct: 515 YICCGDSLAAFSLLESITPISDIISWNTAIVGCVQNGLYGDALEAFQFMHSTLTLNPDSI 574

Query: 457 TYLSILNACGHAGLTNDGLVI----FNQMIEEN 485
           T +S+L+ CG+  L + G  I      ++IE N
Sbjct: 575 TLVSVLSVCGNLKLQSLGKSIHCMALKRLIEFN 607



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 91/319 (28%), Positives = 164/319 (51%), Gaps = 7/319 (2%)

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM-GLFVDFE 230
           +H   +K G +LD  V  SV+  YS + D+ +A+Q+F E    D+I W   +  L ++  
Sbjct: 85  LHCAALKSGAVLDPPVRTSVITAYSRVRDVCSALQVFDEAAAPDLILWNAAISALTLNCR 144

Query: 231 YAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSN 290
           Y GDA+ +FR M     + D+ +++ ++S  +    L+ G   H   +   L ++L L N
Sbjct: 145 Y-GDAVVLFRWMVDVLGVIDSTSMVIMLSGASRARSLEHGIAFHGMALKRCLDTDLSLWN 203

Query: 291 SIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDS 350
           +++ MY+KCGD  SS  VF ++  +   SW +++SG + NG A  +   F +M +    +
Sbjct: 204 TLMDMYAKCGDFYSSEVVFQRMPYRDTTSWNSMVSGSLFNGLAEISAYYFKEMVRSSFQA 263

Query: 351 VDSITLVSILTASGELAAL-EICLQLHGIAFEAGFP-RYRSVQNCLISSYSKCGNVDLAY 408
            D ++L  +L+A   L  L      +H    + G+     SV N LI+ Y + G  + A 
Sbjct: 264 -DEVSLSCVLSACSHLKDLFSFGESVHSSVIKLGYEDTTSSVANSLITFYYELGFPEAAE 322

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
            VF      +++V+WN +I G   N     A+ ++ +M    + PD +T ++I++ACG  
Sbjct: 323 EVFLSTSN-KNLVTWNAMIKGLVENDRVNEAMCMFQEMRSKNQ-PDVATLVTIISACGDH 380

Query: 469 GLTNDGLVIFNQMIEENKV 487
           GL  +G  +   +I++  +
Sbjct: 381 GLLPEGKEVHGYIIKKGHI 399


>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 591

 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 145/484 (29%), Positives = 247/484 (51%), Gaps = 41/484 (8%)

Query: 118 CNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTI 177
           CNAI+     N +    +   N     GL P+  T+  V++    +      + IH  +I
Sbjct: 78  CNAIIRSISRNSINLSPMEFLNEMLVVGLEPDGFTIPLVLKALALIQGIREGQQIHARSI 137

Query: 178 KLGLI-LDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDAL 236
           K G++  +V V+N+++ +YS    +    ++F E   +D++SWT ++  F        A+
Sbjct: 138 KTGMVGFNVYVSNTLMRLYSVCGSIHDVQKVFDECPHRDLVSWTTLIQAFTKAGLYSRAV 197

Query: 237 KIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV-LGGLQSELRLSNSIIAM 295
           + F EM   R+  D   L+ ++S  + LGDL  G+++H+ +     +++++ + N+++ M
Sbjct: 198 EAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRHYIDMKADVFVGNALLDM 257

Query: 296 YSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSIT 355
           Y KC DL+S+  VF+++  K++V+W A+ISG    G  REAL+ F +M Q+K    D +T
Sbjct: 258 YLKCDDLNSAYKVFDEMPVKNVVTWNAMISGLAYQGRYREALDTF-RMMQDKGVKPDEVT 316

Query: 356 LVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMG 415
           LV +L +   L  LEI   +H           + V N L+  Y+KCG++D A+ VFE M 
Sbjct: 317 LVGVLNSCANLGVLEIGKWVHAYMRRNHILADKFVGNALLDMYAKCGSIDEAFRVFESMK 376

Query: 416 FLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGL 475
             RDV S+  +I+G  ++G    A  ++ +M   G  P+  T+L +L AC H GL  +G 
Sbjct: 377 -RRDVYSYTAMIFGLALHGEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGK 435

Query: 476 VIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWR--ALLSGC 533
             F QM ++ K++P  EHYGC++DLL RAG + +A  +  K+   + P+++   ALL  C
Sbjct: 436 KYFFQMSDKYKLRPQAEHYGCMIDLLGRAGLVKEAEEIIHKM--EIRPDVFACGALLGAC 493

Query: 534 VLH---------------------------------VGRFQDAEALRSGSQKKGIIKIPG 560
            +H                                 V R++DA  +R   + K + K PG
Sbjct: 494 RIHGNVDIGESVMQKLTELDPDEEGTYILMTNLYSSVHRWKDALKIRKTMKNKKMRKTPG 553

Query: 561 ISFL 564
            S +
Sbjct: 554 CSLI 557



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 124/483 (25%), Positives = 217/483 (44%), Gaps = 37/483 (7%)

Query: 42  VIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG 101
           +I   S N  +   M+  + M++ GL P+ FT+  VL A A +Q +   + IH   +K G
Sbjct: 81  IIRSISRNSINLSPMEFLNEMLVVGLEPDGFTIPLVLKALALIQGIREGQQIHARSIKTG 140

Query: 102 L-----------------------ESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLF 138
           +                          +F+   +  LVS   ++  F    L+ +AV  F
Sbjct: 141 MVGFNVYVSNTLMRLYSVCGSIHDVQKVFDECPHRDLVSWTTLIQAFTKAGLYSRAVEAF 200

Query: 139 NFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHG-LTIKLGLILDVSVNNSVLDMYSC 197
                  L  +  T++ V+  C  LG   L + +H  +   + +  DV V N++LDMY  
Sbjct: 201 MEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRHYIDMKADVFVGNALLDMYLK 260

Query: 198 LMDLDAAIQIFREMECKDVISWTRMM-GLFVDFEYAGDALKIFREMRKSRIICDTVALLN 256
             DL++A ++F EM  K+V++W  M+ GL     Y  +AL  FR M+   +  D V L+ 
Sbjct: 261 CDDLNSAYKVFDEMPVKNVVTWNAMISGLAYQGRYR-EALDTFRMMQDKGVKPDEVTLVG 319

Query: 257 LISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKS 316
           +++  A LG L+ GK +HA +    + ++  + N+++ MY+KCG +D +  VF  +  + 
Sbjct: 320 VLNSCANLGVLEIGKWVHAYMRRNHILADKFVGNALLDMYAKCGSIDEAFRVFESMKRRD 379

Query: 317 LVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTA--SGELAALEICLQ 374
           + S+TA+I G   +G A  A   F +M +   +  + +T + +L A   G L A E    
Sbjct: 380 VYSYTAMIFGLALHGEANWAFQVFSEMFRVGIEP-NEVTFLGLLMACSHGGLVA-EGKKY 437

Query: 375 LHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNG 434
              ++ +           C+I    + G V  A  +  +M    DV +   ++    ++G
Sbjct: 438 FFQMSDKYKLRPQAEHYGCMIDLLGRAGLVKEAEEIIHKMEIRPDVFACGALLGACRIHG 497

Query: 435 HGETALALYHKMTETGEVPDSS-TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEH 493
           + +   ++  K+TE    PD   TY+ + N         D L I   M    K K  ++ 
Sbjct: 498 NVDIGESVMQKLTELD--PDEEGTYILMTNLYSSVHRWKDALKIRKTM----KNKKMRKT 551

Query: 494 YGC 496
            GC
Sbjct: 552 PGC 554



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 151/296 (51%), Gaps = 25/296 (8%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y S+ L+  Y   G I + + +FDE P +++VSW+ +I  ++  G + ++++AF  M   
Sbjct: 147 YVSNTLMRLYSVCGSIHDVQKVFDECPHRDLVSWTTLIQAFTKAGLYSRAVEAFMEMCDL 206

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKF-GLESDLFEG--LKNPYL------- 115
            L  +  T+V VL A + L +L L + +H  +  +  +++D+F G  L + YL       
Sbjct: 207 RLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRHYIDMKADVFVGNALLDMYLKCDDLNS 266

Query: 116 -------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA 162
                        V+ NA+++G      +++A+  F   +  G+ P+ VT++ V+  C  
Sbjct: 267 AYKVFDEMPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCAN 326

Query: 163 LGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
           LG   + + +H    +  ++ D  V N++LDMY+    +D A ++F  M+ +DV S+T M
Sbjct: 327 LGVLEIGKWVHAYMRRNHILADKFVGNALLDMYAKCGSIDEAFRVFESMKRRDVYSYTAM 386

Query: 223 M-GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           + GL +  E A  A ++F EM +  I  + V  L L+   +  G +  GK+   Q+
Sbjct: 387 IFGLALHGE-ANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKKYFFQM 441



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 72/331 (21%), Positives = 141/331 (42%), Gaps = 60/331 (18%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + LL  Y K   +  A  +FDE+P KNVV+W+ +I G +  G + +++  F  M 
Sbjct: 247 DVFVGNALLDMYLKCDDLNSAYKVFDEMPVKNVVTWNAMISGLAYQGRYREALDTFRMMQ 306

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
             G+ P+  T+VGVL + A L  LE+ + +H  M +  + +D                  
Sbjct: 307 DKGVKPDEVTLVGVLNSCANLGVLEIGKWVHAYMRRNHILADKFVGNALLDMYAKCGSID 366

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC- 160
               +FE +K   + S  A++ G   +     A  +F+     G+ PN VT L ++  C 
Sbjct: 367 EAFRVFESMKRRDVYSYTAMIFGLALHGEANWAFQVFSEMFRVGIEPNEVTFLGLLMACS 426

Query: 161 ----VALGSRALCELIHGLTIK-----LGLILDVSVNNSVL--------------DMYSC 197
               VA G +   ++     ++      G ++D+     ++              D+++C
Sbjct: 427 HGGLVAEGKKYFFQMSDKYKLRPQAEHYGCMIDLLGRAGLVKEAEEIIHKMEIRPDVFAC 486

Query: 198 LMDL------------DAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKS 245
              L            ++ +Q   E++  +  ++  M  L+       DALKI + M+  
Sbjct: 487 GALLGACRIHGNVDIGESVMQKLTELDPDEEGTYILMTNLYSSVHRWKDALKIRKTMKNK 546

Query: 246 RIICDTVALLNLISVNAILGDLKRGKQLHAQ 276
           ++        +LI V+ ++ + ++G + H +
Sbjct: 547 KM--RKTPGCSLIEVDGVVHEFRKGDKSHPR 575


>gi|297832866|ref|XP_002884315.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330155|gb|EFH60574.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 861

 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 166/583 (28%), Positives = 265/583 (45%), Gaps = 45/583 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D   +S LL  Y K  +  E+  +F  IPEKN VSWS +I G   N     ++K F  M 
Sbjct: 172 DVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQ 231

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
                 +      VL + A L  L L   +H   +K    +D                  
Sbjct: 232 KVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQ 291

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               LF+  +N    S NA++ G+   +   +A+LLF+    SGL  + +++  V R C 
Sbjct: 292 DAQILFDKSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACA 351

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            +   +    I+ L IK  L LDV V N+ +DMY     L  A ++F EM  +D +SW  
Sbjct: 352 LVKGLSEGLQIYDLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNA 411

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++          + L +F  M +SRI  D     +++      G L  G ++H+ +V  G
Sbjct: 412 IIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSVLKA-CTGGSLGYGMEIHSSIVKSG 470

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKS--------------------LVSWT 321
           + S   +  S+I MYSKCG ++ +  + ++  +++                     VSW 
Sbjct: 471 MASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRTNVSGTMEELEKMHNKRLQEMCVSWN 530

Query: 322 AIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFE 381
           +IISGYV    + +A   F +M  E   + D  T  ++L     LA+  +  Q+H    +
Sbjct: 531 SIISGYVMKEQSEDAQMLFTRM-MEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIK 589

Query: 382 AGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALA 441
                   + + L+  YSKCG++  + ++FE+    RD V+WN +I GY  +G GE A+ 
Sbjct: 590 KELQSDVYISSTLVDMYSKCGDLHDSRLMFEK-SLRRDFVTWNAMICGYAHHGKGEEAIQ 648

Query: 442 LYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLL 501
           L+ +M      P+  T++SIL AC H GL + GL  F  M  +  + P   HY  +VD+L
Sbjct: 649 LFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDIL 708

Query: 502 ARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAE 544
            ++G +  A  L  ++       IWR LL  C +H    + AE
Sbjct: 709 GKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAE 751



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 154/584 (26%), Positives = 270/584 (46%), Gaps = 46/584 (7%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  D  + +K+++ Y KS  + +A   F+ +P ++VVSW+ ++ GY  NG   KS++ F 
Sbjct: 68  PLRDVVSWNKMINGYAKSNNMVKASFFFNMMPVRDVVSWNSMLSGYLQNGETLKSIEVFV 127

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--------------- 105
            M  +G   +  T   +L   + L++  L   IHG++V+ G ++D               
Sbjct: 128 DMGRAGTEFDGRTFAIILKVCSCLEDTSLGMQIHGVVVRVGCDTDVVAASALLDMYAKGK 187

Query: 106 -------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                  +F+G+     VS +AI+AG + N L   A+  F   +      +     +V+R
Sbjct: 188 RFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLR 247

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C AL    L   +H   +K     D  V  + LDMY+   ++  A  +F + E  +  S
Sbjct: 248 SCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDKSENLNRQS 307

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           +  M+  +   E+   AL +F  +  S +  D ++L  +    A++  L  G Q++   +
Sbjct: 308 YNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYDLAI 367

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
              L  ++ ++N+ I MY KC  L  +  VF+++  +  VSW AII+ + QNG   E L 
Sbjct: 368 KSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLF 427

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
            F+ M + + +  D  T  S+L A     +L   +++H    ++G     SV   LI  Y
Sbjct: 428 LFVSMLRSRIEP-DEFTFGSVLKACTG-GSLGYGMEIHSSIVKSGMASNSSVGCSLIDMY 485

Query: 399 SKCGNVDLAYIV-------------FEEMGFLRD------VVSWNTIIYGYGVNGHGETA 439
           SKCG ++ A  +              EE+  + +       VSWN+II GY +    E A
Sbjct: 486 SKCGMIEEAEKIHSRFFQRTNVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDA 545

Query: 440 LALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVD 499
             L+ +M E G  PD  TY ++L+ C +      G  I  Q+I++ +++        +VD
Sbjct: 546 QMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKK-ELQSDVYISSTLVD 604

Query: 500 LLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDA 543
           + ++ G L D+  +  K L       W A++ G   H G+ ++A
Sbjct: 605 MYSKCGDLHDSRLMFEKSLR-RDFVTWNAMICGYAHH-GKGEEA 646



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 139/511 (27%), Positives = 223/511 (43%), Gaps = 63/511 (12%)

Query: 12  LSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNS 71
           L  Y K   +++A+ LFD+    N  S++ +I GYS      K++  F  +M SGL  + 
Sbjct: 281 LDMYAKCDNMQDAQILFDKSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDE 340

Query: 72  FTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------------FEG 109
            ++ GV  A A ++ L     I+ L +K  L  D+                      F+ 
Sbjct: 341 ISLSGVFRACALVKGLSEGLQIYDLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDE 400

Query: 110 LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALC 169
           ++    VS NAI+A    N    + + LF     S + P+  T  +V++ C   GS    
Sbjct: 401 MRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSVLKACTG-GSLGYG 459

Query: 170 ELIHGLTIKLGLILDVSVNNSVLDMYS-CLM---------------DLDAAIQIFREMEC 213
             IH   +K G+  + SV  S++DMYS C M               ++   ++   +M  
Sbjct: 460 MEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRTNVSGTMEELEKMHN 519

Query: 214 KDV----ISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKR 269
           K +    +SW  ++  +V  E + DA  +F  M +  I  D      ++   A L     
Sbjct: 520 KRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGL 579

Query: 270 GKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQ 329
           GKQ+HAQV+   LQS++ +S++++ MYSKCGDL  SR +F +   +  V+W A+I GY  
Sbjct: 580 GKQIHAQVIKKELQSDVYISSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAH 639

Query: 330 NGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQL-----HGIAFEAGF 384
           +G   EA+  F +M  E     + +T +SIL A   +  ++  L+           +   
Sbjct: 640 HGKGEEAIQLFERMILENIKP-NHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQL 698

Query: 385 PRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTI-----IYGYGVNGHGETA 439
           P Y ++ + L     K G V  A  +  EM F  D V W T+     I+   V    E  
Sbjct: 699 PHYSNMVDIL----GKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEAT 754

Query: 440 LALYHKMTETGEVPDSSTYLSILNACGHAGL 470
            AL        +  DSS Y  + N    AG+
Sbjct: 755 AALLRL-----DPQDSSAYTLLSNVYADAGM 780



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 123/493 (24%), Positives = 229/493 (46%), Gaps = 30/493 (6%)

Query: 49  NGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELA----------------RS 92
            G  E   +A +HM+LSG  P +F +  +L      ++   A                + 
Sbjct: 19  QGALELGKQAHAHMILSGFRPTTFVLNCLLQVYTNSRDFVSASMVFDRMPLRDVVSWNKM 78

Query: 93  IHGL-----MVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLV 147
           I+G      MVK    S  F  +    +VS N++++G++ N    +++ +F     +G  
Sbjct: 79  INGYAKSNNMVK---ASFFFNMMPVRDVVSWNSMLSGYLQNGETLKSIEVFVDMGRAGTE 135

Query: 148 PNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQI 207
            +  T   +++ C  L   +L   IHG+ +++G   DV   +++LDMY+       ++++
Sbjct: 136 FDGRTFAIILKVCSCLEDTSLGMQIHGVVVRVGCDTDVVAASALLDMYAKGKRFVESLRV 195

Query: 208 FREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDL 267
           F+ +  K+ +SW+ ++   V       ALK F+EM+K           +++   A L +L
Sbjct: 196 FQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSEL 255

Query: 268 KRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGY 327
           + G QLHA  +     ++  +  + + MY+KC ++  ++ +F++    +  S+ A+I+GY
Sbjct: 256 RLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDKSENLNRQSYNAMITGY 315

Query: 328 VQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRY 387
            Q     +AL  F ++        D I+L  +  A   +  L   LQ++ +A ++     
Sbjct: 316 SQEEHGFKALLLFHRLMSSGL-GFDEISLSGVFRACALVKGLSEGLQIYDLAIKSSLSLD 374

Query: 388 RSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMT 447
             V N  I  Y KC  +  A+ VF+EM   RD VSWN II  +  NG G   L L+  M 
Sbjct: 375 VCVANAAIDMYGKCQALAEAFRVFDEMR-RRDAVSWNAIIAAHEQNGKGYETLFLFVSML 433

Query: 448 ETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGC-VVDLLARAGC 506
            +   PD  T+ S+L AC   G    G+ I + +++      S    GC ++D+ ++ G 
Sbjct: 434 RSRIEPDEFTFGSVLKACT-GGSLGYGMEIHSSIVKSGMA--SNSSVGCSLIDMYSKCGM 490

Query: 507 LSDASGLAGKLLE 519
           + +A  +  +  +
Sbjct: 491 IEEAEKIHSRFFQ 503


>gi|255586014|ref|XP_002533676.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526427|gb|EEF28706.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 726

 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 170/629 (27%), Positives = 311/629 (49%), Gaps = 71/629 (11%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           + S+KL+S Y K   ++ A ++F  + E N +SW++++  +   G   +++  +  M  S
Sbjct: 63  FPSTKLISFYSKFNDLESAISVFSLLQEPNTLSWNLIMRTHLDFGLVTEALLLYKKMRES 122

Query: 66  GLLPNSFTMVGVLVAAAGLQ-NLELARSIHGLMVKFGLESDL------------------ 106
           G+  ++FT   +  A   L+ ++ L + +H   +K G   DL                  
Sbjct: 123 GVKTDAFTFPTINRAVMSLKSDVLLGKMVHCDAMKLGFGYDLYFCNTMIEVYARCGCVYY 182

Query: 107 ----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA 162
               F+ +    LVS  ++++G+++      A  LFN  R   + PN+VT++ +++GC A
Sbjct: 183 GRVMFDEMSPRDLVSWTSMISGYVSEGNVFSAFELFNKMRLE-MEPNSVTLIVMLKGCYA 241

Query: 163 LGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
             + +    +H   IK GL++  SV NS+L MYS          +F E+  +DVISW  +
Sbjct: 242 YDNFSEGRQLHCYIIKNGLLIYGSVQNSILRMYSITGSAKEVESLFVEIYRRDVISWNTL 301

Query: 223 MGLFVDFEYAGDALKI---FREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           +G +      GDA ++   F +MR   +   +  L  +ISV A +G+L  G++LH+  + 
Sbjct: 302 IGFYA---LRGDAEEMVCGFNQMR-GEVALSSETLTLVISVFAKIGNLVEGEKLHSFSIK 357

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            GL  ++ L+ S++  Y+KCG+L +S  +F +I  +S  +W  ++SG +QNG   EA++ 
Sbjct: 358 VGLCDDVLLA-SLLDFYAKCGELRNSVQLFGEIPCRSSSTWKLMMSGCIQNGYFDEAIHL 416

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYR----SVQNCLI 395
           F +M Q     + +  L S++ A   L +L++C ++HG      F         +   ++
Sbjct: 417 FRQM-QASGVQLQAQILGSLVDACSHLGSLQLCKEIHGYLTRNFFYILEGDNIHLGTSIL 475

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
           + Y +CG++  A   F  M   +D ++W ++I GYG++G    AL L+++M     +P+ 
Sbjct: 476 NMYIRCGSISSAREYFNRM-VAKDNITWTSMIEGYGIHGMAIEALKLFNQMLVERVLPNR 534

Query: 456 STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAG 515
            T+LS+L+AC H+GL   G  +F  M     ++P  +HY C+VDLL R G + +A  +  
Sbjct: 535 VTFLSLLSACSHSGLIRQGCELFLSMKWVFGMEPDLDHYTCMVDLLGRCGKIKEALAMII 594

Query: 516 KLLEGMGPNIWRALLSGCVLH---------------------------------VGRFQD 542
           +++      IW AL++ C +H                                 VG++ +
Sbjct: 595 RMVVVADSRIWGALVASCRVHGDKKVGEFAAQRLLEMESDNVGYYTLLSNIQAMVGKWDE 654

Query: 543 AEALRSGSQKKGIIKIPGISFLNSTSRDF 571
            E +R    +K + K PG S +    R++
Sbjct: 655 VEQVRKVIHEKDLRKTPGWSCIVGKGRNY 683



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 121/464 (26%), Positives = 220/464 (47%), Gaps = 43/464 (9%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + ++  Y + G +     +FDE+  +++VSW+ +I GY   G    + + F+ M 
Sbjct: 163 DLYFCNTMIEVYARCGCVYYGRVMFDEMSPRDLVSWTSMISGYVSEGNVFSAFELFNKMR 222

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNP----YLVSCN 119
           L  + PNS T++ +L       N    R +H  ++K GL   ++  ++N     Y ++ +
Sbjct: 223 LE-MEPNSVTLIVMLKGCYAYDNFSEGRQLHCYIIKNGLL--IYGSVQNSILRMYSITGS 279

Query: 120 AIVAGFINNKLFQQAVLLFN----FFRGSGLVPNAVTMLTVIRGCVALGSRALC------ 169
           A     +  +++++ V+ +N    F+   G     V     +RG VAL S  L       
Sbjct: 280 AKEVESLFVEIYRRDVISWNTLIGFYALRGDAEEMVCGFNQMRGEVALSSETLTLVISVF 339

Query: 170 ---------ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
                    E +H  +IK+GL  DV +  S+LD Y+   +L  ++Q+F E+ C+   +W 
Sbjct: 340 AKIGNLVEGEKLHSFSIKVGLCDDVLL-ASLLDFYAKCGELRNSVQLFGEIPCRSSSTWK 398

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV--- 277
            MM   +   Y  +A+ +FR+M+ S +      L +L+   + LG L+  K++H  +   
Sbjct: 399 LMMSGCIQNGYFDEAIHLFRQMQASGVQLQAQILGSLVDACSHLGSLQLCKEIHGYLTRN 458

Query: 278 ---VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
              +L G    + L  SI+ MY +CG + S+R  FN++  K  ++WT++I GY  +G A 
Sbjct: 459 FFYILEG--DNIHLGTSILNMYIRCGSISSAREYFNRMVAKDNITWTSMIEGYGIHGMAI 516

Query: 335 EALNQFIKMRQEKT--DSVDSITLVSILTASGEL-AALEICLQLHGI-AFEAGFPRYRSV 390
           EAL  F +M  E+   + V  ++L+S  + SG +    E+ L +  +   E     Y   
Sbjct: 517 EALKLFNQMLVERVLPNRVTFLSLLSACSHSGLIRQGCELFLSMKWVFGMEPDLDHY--- 573

Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNG 434
             C++    +CG +  A  +   M  + D   W  ++    V+G
Sbjct: 574 -TCMVDLLGRCGKIKEALAMIIRMVVVADSRIWGALVASCRVHG 616


>gi|449445041|ref|XP_004140282.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
 gi|449481162|ref|XP_004156100.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
          Length = 693

 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 159/558 (28%), Positives = 281/558 (50%), Gaps = 35/558 (6%)

Query: 8   SSKLLSNYFKSGKIKEAENLF--DEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           S  L+  YF       AE +F  ++ P  +V  W+ ++  Y+ N    ++++ F  +  +
Sbjct: 41  SKSLIGFYFSCHDYASAELVFQTNDCP-LDVSLWNALLSAYTNNFRFVEALQLFDQLNCN 99

Query: 66  GLL-PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPYL------- 115
             + P+ +T   VL A  GL  +   R IH  ++K GL  D+F G  L N Y        
Sbjct: 100 SYVRPDFYTYPVVLKACGGLGRVIYGRRIHNHLLKTGLIWDVFVGSSLMNMYAKCDQFVD 159

Query: 116 ------------VSC-NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA 162
                       V C NA+++ +  +   + A+  F+  +  G  PN+VT   V+  C  
Sbjct: 160 AIKLFDEFPQRDVGCWNAVISCYFKDGKAEMALKTFDKMKELGFEPNSVTFTVVVSSCTR 219

Query: 163 LGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
           L +    + +H   I+  ++LD  V ++++DMY     L+ A ++F ++  K+ I+W  M
Sbjct: 220 LLNLERGKEVHRELIERRILLDAFVLSALVDMYGKCGCLEMAKEVFEKIPRKNAITWNAM 279

Query: 223 MGLFVDFEYAGDA---LKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           +     +   GD+   +++   M         + L ++I  ++    L+ GK +H  ++ 
Sbjct: 280 I---TGYSLKGDSRSCIELLMRMNDEGTKPTLMTLTSIIYASSRSVQLRHGKFIHGYILR 336

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
             +  ++ +  S+I  Y KCG + S+ ++F  I++  +VSW  +ISG+V  G   +AL+ 
Sbjct: 337 NRIDVDIFIDVSLIDFYFKCGYVSSAETIFRTISKNEVVSWNVMISGHVMVGNHIQALHI 396

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           +  M++      D++T  S L+A  +LAAL+   +LH             V   L+  Y+
Sbjct: 397 YDNMKEHHVKP-DALTFSSTLSACSQLAALDKGRELHYCIINHKLEANEIVMGALLDMYA 455

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           KCG+VD A  +F ++   RD+VSW ++I+ YG +G    AL L+ +M +     DS T+L
Sbjct: 456 KCGDVDEARKLFHQLP-KRDLVSWTSMIFAYGSHGQASEALRLFDEMQKLNVRADSVTFL 514

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519
           ++L+AC HAGL ++G + FN+M+ +  +KP  EHY C++DLL RAG L +A  +  +  E
Sbjct: 515 AVLSACSHAGLVDEGYMYFNEMVVQYDIKPGIEHYSCLIDLLGRAGRLHEAYEILQRSKE 574

Query: 520 GMGP-NIWRALLSGCVLH 536
                 +   L S C+LH
Sbjct: 575 TRSDIGLLSTLFSACLLH 592



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 111/440 (25%), Positives = 207/440 (47%), Gaps = 38/440 (8%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  S L++ Y K  +  +A  LFDE P+++V  W+ VI  Y  +G  E ++K F  M 
Sbjct: 140 DVFVGSSLMNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAEMALKTFDKMK 199

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK----------------------FG 101
             G  PNS T   V+ +   L NLE  + +H  +++                        
Sbjct: 200 ELGFEPNSVTFTVVVSSCTRLLNLERGKEVHRELIERRILLDAFVLSALVDMYGKCGCLE 259

Query: 102 LESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
           +  ++FE +     ++ NA++ G+      +  + L       G  P  +T+ ++I    
Sbjct: 260 MAKEVFEKIPRKNAITWNAMITGYSLKGDSRSCIELLMRMNDEGTKPTLMTLTSIIYASS 319

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
                   + IHG  ++  + +D+ ++ S++D Y     + +A  IFR +   +V+SW  
Sbjct: 320 RSVQLRHGKFIHGYILRNRIDVDIFIDVSLIDFYFKCGYVSSAETIFRTISKNEVVSWNV 379

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+   V       AL I+  M++  +  D +   + +S  + L  L +G++LH  ++   
Sbjct: 380 MISGHVMVGNHIQALHIYDNMKEHHVKPDALTFSSTLSACSQLAALDKGRELHYCIINHK 439

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           L++   +  +++ MY+KCGD+D +R +F+Q+ ++ LVSWT++I  Y  +G A EAL  F 
Sbjct: 440 LEANEIVMGALLDMYAKCGDVDEARKLFHQLPKRDLVSWTSMIFAYGSHGQASEALRLFD 499

Query: 342 KMRQEKTDSVDSITLVSILTA--------SGELAALEICLQLHGIAFEAGFPRYRSVQNC 393
           +M Q+     DS+T +++L+A         G +   E+ +Q      + G   Y    +C
Sbjct: 500 EM-QKLNVRADSVTFLAVLSACSHAGLVDEGYMYFNEMVVQYD---IKPGIEHY----SC 551

Query: 394 LISSYSKCGNVDLAYIVFEE 413
           LI    + G +  AY + + 
Sbjct: 552 LIDLLGRAGRLHEAYEILQR 571



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 89/389 (22%), Positives = 185/389 (47%), Gaps = 6/389 (1%)

Query: 149 NAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIF 208
           + VT+L+ +R C +       +LIH      G   ++ ++ S++  Y    D  +A  +F
Sbjct: 2   DYVTLLSALRTCTSSKLLKQGKLIHQRIFSCGFQSNIVLSKSLIGFYFSCHDYASAELVF 61

Query: 209 REMECK-DVISWTRMMGLFVDFEYAGDALKIFREMR-KSRIICDTVALLNLISVNAILGD 266
           +  +C  DV  W  ++  + +     +AL++F ++   S +  D      ++     LG 
Sbjct: 62  QTNDCPLDVSLWNALLSAYTNNFRFVEALQLFDQLNCNSYVRPDFYTYPVVLKACGGLGR 121

Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISG 326
           +  G+++H  ++  GL  ++ + +S++ MY+KC     +  +F++  ++ +  W A+IS 
Sbjct: 122 VIYGRRIHNHLLKTGLIWDVFVGSSLMNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISC 181

Query: 327 YVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPR 386
           Y ++G A  AL  F KM++   +  +S+T   ++++   L  LE   ++H    E     
Sbjct: 182 YFKDGKAEMALKTFDKMKELGFEP-NSVTFTVVVSSCTRLLNLERGKEVHRELIERRILL 240

Query: 387 YRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM 446
              V + L+  Y KCG +++A  VFE++   ++ ++WN +I GY + G   + + L  +M
Sbjct: 241 DAFVLSALVDMYGKCGCLEMAKEVFEKIP-RKNAITWNAMITGYSLKGDSRSCIELLMRM 299

Query: 447 TETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGC 506
            + G  P   T  SI+ A   +     G  I   ++  N++         ++D   + G 
Sbjct: 300 NDEGTKPTLMTLTSIIYASSRSVQLRHGKFIHGYIL-RNRIDVDIFIDVSLIDFYFKCGY 358

Query: 507 LSDASGLAGKLLEGMGPNIWRALLSGCVL 535
           +S A  +   + +    + W  ++SG V+
Sbjct: 359 VSSAETIFRTISKNEVVS-WNVMISGHVM 386



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/335 (22%), Positives = 157/335 (46%), Gaps = 23/335 (6%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  S L+  Y K G ++ A+ +F++IP KN ++W+ +I GYS+ G     ++    M
Sbjct: 240 LDAFVLSALVDMYGKCGCLEMAKEVFEKIPRKNAITWNAMITGYSLKGDSRSCIELLMRM 299

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
              G  P   T+  ++ A++    L   + IHG +++  ++ D                 
Sbjct: 300 NDEGTKPTLMTLTSIIYASSRSVQLRHGKFIHGYILRNRIDVDIFIDVSLIDFYFKCGYV 359

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +F  +    +VS N +++G +      QA+ +++  +   + P+A+T  + +  C
Sbjct: 360 SSAETIFRTISKNEVVSWNVMISGHVMVGNHIQALHIYDNMKEHHVKPDALTFSSTLSAC 419

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             L +      +H   I   L  +  V  ++LDMY+   D+D A ++F ++  +D++SWT
Sbjct: 420 SQLAALDKGRELHYCIINHKLEANEIVMGALLDMYAKCGDVDEARKLFHQLPKRDLVSWT 479

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQ-LHAQVVL 279
            M+  +     A +AL++F EM+K  +  D+V  L ++S  +  G +  G    +  VV 
Sbjct: 480 SMIFAYGSHGQASEALRLFDEMQKLNVRADSVTFLAVLSACSHAGLVDEGYMYFNEMVVQ 539

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE 314
             ++  +   + +I +  + G L  +  +  +  E
Sbjct: 540 YDIKPGIEHYSCLIDLLGRAGRLHEAYEILQRSKE 574



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 57/134 (42%), Gaps = 1/134 (0%)

Query: 351 VDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIV 410
           +D +TL+S L        L+    +H   F  GF     +   LI  Y  C +   A +V
Sbjct: 1   MDYVTLLSALRTCTSSKLLKQGKLIHQRIFSCGFQSNIVLSKSLIGFYFSCHDYASAELV 60

Query: 411 FEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV-PDSSTYLSILNACGHAG 469
           F+      DV  WN ++  Y  N     AL L+ ++     V PD  TY  +L ACG  G
Sbjct: 61  FQTNDCPLDVSLWNALLSAYTNNFRFVEALQLFDQLNCNSYVRPDFYTYPVVLKACGGLG 120

Query: 470 LTNDGLVIFNQMIE 483
               G  I N +++
Sbjct: 121 RVIYGRRIHNHLLK 134


>gi|242056803|ref|XP_002457547.1| hypothetical protein SORBIDRAFT_03g009160 [Sorghum bicolor]
 gi|241929522|gb|EES02667.1| hypothetical protein SORBIDRAFT_03g009160 [Sorghum bicolor]
          Length = 762

 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 174/584 (29%), Positives = 280/584 (47%), Gaps = 71/584 (12%)

Query: 14  NYF-KSGKIKEAENLFDEIPEK----------------------------------NVVS 38
           NY   SG++  A  + D++PEK                                  N  +
Sbjct: 45  NYLVSSGRLAAARKVLDQVPEKSTLYLRFLNRILLGCSRSCDLSAAKALFSAAARRNAKT 104

Query: 39  WSIVIHGYSINGFHEKSMKAFSHMMLSG-LLPNSFTMVGVLVAAAGLQNLELARSIHGLM 97
           W+I++     +G    ++  F  M+  G   P+  T+  VL     +   ++  ++H ++
Sbjct: 105 WTIMMRMLPADGRGSDAVSLFRDMLREGEASPDDVTITTVL----NVPGCDVG-TLHPVV 159

Query: 98  VKFG-----------LESDLFEG---------LKNPYL--VSCNAIVAGFINNKLFQQAV 135
            K G           L++   +G         L+ P+   ++ NA++ G        +A+
Sbjct: 160 TKLGFGASVVVCNTLLDAYCKQGFIAAARRVFLEMPHRDSITYNAMIMGCSRQGRHGEAL 219

Query: 136 LLFNFFRGSGLVPNAVT---MLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVL 192
            LF   R  G+  +  T   +LTV  G V L    L   IHGL ++     +V VNN++L
Sbjct: 220 ELFAAMRREGVDTSHFTFSSLLTVATGMVDL---HLGRQIHGLFVRANPSCNVFVNNALL 276

Query: 193 DMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTV 252
           D YS    L    Q+F EM  +D +S+  M+         G AL++FR+M+       T+
Sbjct: 277 DFYSKCDSLGDLKQLFDEMSERDNVSYNVMISACSWNRCGGMALQLFRDMQTLGFDRRTL 336

Query: 253 ALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQI 312
              +L+SV   L  +K G+Q+HAQ++L GL  E  + N++I MYSKCG LD+++++F   
Sbjct: 337 PYASLLSVAGALPHIKIGRQIHAQLILHGLTLEDFVGNALIDMYSKCGMLDAAKTIFAYK 396

Query: 313 TEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEIC 372
           ++K+ +SWTA+I+G VQNG   EAL  F  MR+    S D  T  SI+ +S  LA + I 
Sbjct: 397 SDKTAISWTALITGCVQNGQNEEALQLFCDMRRAGL-SPDRATCSSIMKSSSSLAVIGIG 455

Query: 373 LQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGV 432
            QLH    ++G        + L+  Y+KCG +D A   F EM   ++ ++WN +I  Y  
Sbjct: 456 RQLHAYLTKSGHMPSVFSGSALLDMYAKCGCLDEAIRTFNEMP-EKNSITWNAVISAYAQ 514

Query: 433 NGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQE 492
            G  + A+ ++  M   G  PD  T+LS+L ACGH GL  + +  F+ M     + P +E
Sbjct: 515 YGQAKNAIRMFDSMLHCGLCPDPVTFLSVLAACGHNGLAEECMKYFDLMRYYYSMSPWKE 574

Query: 493 HYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
           HY CV+D L RAGC      +  ++     P IW ++L  C ++
Sbjct: 575 HYSCVIDTLGRAGCFDKIQKVIDEMPFEDDPIIWSSILHSCRIY 618



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 135/502 (26%), Positives = 236/502 (47%), Gaps = 28/502 (5%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           LL  Y K G I  A  +F E+P ++ ++++ +I G S  G H ++++ F+ M   G+  +
Sbjct: 174 LLDAYCKQGFIAAARRVFLEMPHRDSITYNAMIMGCSRQGRHGEALELFAAMRREGVDTS 233

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVK----------------------FGLESDLFE 108
            FT   +L  A G+ +L L R IHGL V+                       G    LF+
Sbjct: 234 HFTFSSLLTVATGMVDLHLGRQIHGLFVRANPSCNVFVNNALLDFYSKCDSLGDLKQLFD 293

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            +     VS N +++    N+    A+ LF   +  G     +   +++    AL    +
Sbjct: 294 EMSERDNVSYNVMISACSWNRCGGMALQLFRDMQTLGFDRRTLPYASLLSVAGALPHIKI 353

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
              IH   I  GL L+  V N+++DMYS    LDAA  IF     K  ISWT ++   V 
Sbjct: 354 GRQIHAQLILHGLTLEDFVGNALIDMYSKCGMLDAAKTIFAYKSDKTAISWTALITGCVQ 413

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
                +AL++F +MR++ +  D     +++  ++ L  +  G+QLHA +   G    +  
Sbjct: 414 NGQNEEALQLFCDMRRAGLSPDRATCSSIMKSSSSLAVIGIGRQLHAYLTKSGHMPSVFS 473

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
            ++++ MY+KCG LD +   FN++ EK+ ++W A+IS Y Q G A+ A+  F  M     
Sbjct: 474 GSALLDMYAKCGCLDEAIRTFNEMPEKNSITWNAVISAYAQYGQAKNAIRMFDSMLHCGL 533

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGI-AFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
              D +T +S+L A G     E C++   +  +      ++   +C+I +  + G  D  
Sbjct: 534 -CPDPVTFLSVLAACGHNGLAEECMKYFDLMRYYYSMSPWKEHYSCVIDTLGRAGCFDKI 592

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNACG 466
             V +EM F  D + W++I++   + G+ + A     K+     VP D++ Y+ + N   
Sbjct: 593 QKVIDEMPFEDDPIIWSSILHSCRIYGNQDLATVAAEKLFTM--VPTDATAYVILSNIYA 650

Query: 467 HAGLTNDGLVIFNQMIEENKVK 488
            AG   +G     +++ +  VK
Sbjct: 651 KAG-NWEGAARVKKIMRDRGVK 671



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/180 (21%), Positives = 82/180 (45%), Gaps = 22/180 (12%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           ++ +  + L+  Y K G +  A+ +F    +K  +SW+ +I G   NG +E++++ F  M
Sbjct: 368 LEDFVGNALIDMYSKCGMLDAAKTIFAYKSDKTAISWTALITGCVQNGQNEEALQLFCDM 427

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG------------- 109
             +GL P+  T   ++ +++ L  + + R +H  + K G    +F G             
Sbjct: 428 RRAGLSPDRATCSSIMKSSSSLAVIGIGRQLHAYLTKSGHMPSVFSGSALLDMYAKCGCL 487

Query: 110 ---------LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                    +     ++ NA+++ +      + A+ +F+     GL P+ VT L+V+  C
Sbjct: 488 DEAIRTFNEMPEKNSITWNAVISAYAQYGQAKNAIRMFDSMLHCGLCPDPVTFLSVLAAC 547


>gi|297738941|emb|CBI28186.3| unnamed protein product [Vitis vinifera]
          Length = 760

 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 152/530 (28%), Positives = 267/530 (50%), Gaps = 17/530 (3%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L++ Y K+G    A  +F+ +   ++VSW+ V+ G+  +   + ++     M  +G+  +
Sbjct: 119 LMNMYCKAGLFDRALVVFENLNNPDIVSWNTVLSGFQRS---DDALNFALRMNFTGVAFD 175

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPYLVSCNAIVAGFINN 128
           + T   VL   +  +       +H  ++K GL+ ++F G  L   Y   C  + A   N+
Sbjct: 176 AVTCTTVLAFCSDHEGFIFGFQLHSRILKCGLDCEVFVGNALITMYSRCCRLVEARRGNS 235

Query: 129 KLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVN 188
            L  +A+L+F      G+  + V+    I  C       L   IH L +K+G    V V 
Sbjct: 236 GL--EAILVFLEMLKEGMKLDHVSFTGAISACGHGKEFELGRQIHSLAVKIGYDTHVKVC 293

Query: 189 NSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRII 248
           N ++  YS   D++ A  +F  +  ++V+SWT M+ +  +     DA  +F EMR+  + 
Sbjct: 294 NVLISTYSKCEDIEDAKLVFESIIDRNVVSWTTMISISEE-----DATSLFNEMRRDGVY 348

Query: 249 CDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSV 308
            + V  + LI    +   ++ G+ +H   V     SEL +SNS+I MY+K   +  S  V
Sbjct: 349 PNDVTFVGLIHAITMKNLVEEGQMIHGVCVKTSFLSELNVSNSLITMYAKFESMSDSMKV 408

Query: 309 FNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILT--ASGEL 366
           F ++  + ++SW ++ISGY QNG  +EAL  F+    E     +  T  S+L+  AS E 
Sbjct: 409 FEELNYREIISWNSLISGYAQNGLWQEALQTFLSALMESRP--NEFTFGSVLSSIASAEA 466

Query: 367 AALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTI 426
            ++    + H    + G      V + L+  Y+K G++  +  VF E   L++ V+W  I
Sbjct: 467 ISMRHGQRCHSHILKLGLNTNPIVSSALLDMYAKRGSICESLGVFSETP-LKNEVAWTAI 525

Query: 427 IYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENK 486
           I  +  +G  E  + L+  M   G  PDS T+L+++ ACG  G+ + G  +FN M++++ 
Sbjct: 526 ISAHARHGDYEAVMNLFKDMEREGVKPDSITFLAVITACGRKGMVDTGYQLFNSMVKDHL 585

Query: 487 VKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
           ++PS EHY  +VD+L RAG L +A    G++  G G ++ ++LL  C +H
Sbjct: 586 IEPSPEHYSSMVDMLGRAGRLKEAEEFVGQIPGGAGLSVLQSLLGACRIH 635



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 174/365 (47%), Gaps = 36/365 (9%)

Query: 115 LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPN--AVTMLTVIRGCVALGSRALCELI 172
           + S N  +   +   L  +A+ LF      G V N   VT+  V++ C    S+  C+ I
Sbjct: 43  IASLNRSMLTALRRNLSLEALDLFKKQLQWGFVGNIDQVTVAIVLKACCG-DSKLGCQ-I 100

Query: 173 HGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYA 232
           H   I  G I  V+V NS+++MY      D A+ +F  +   D++SW  ++     F+ +
Sbjct: 101 HAFAISSGFISHVTVPNSLMNMYCKAGLFDRALVVFENLNNPDIVSWNTVLS---GFQRS 157

Query: 233 GDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSI 292
            DAL     M  + +  D V    +++  +       G QLH++++  GL  E+ + N++
Sbjct: 158 DDALNFALRMNFTGVAFDAVTCTTVLAFCSDHEGFIFGFQLHSRILKCGLDCEVFVGNAL 217

Query: 293 IAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVD 352
           I MYS+C  L  +R                      +     EA+  F++M +E    +D
Sbjct: 218 ITMYSRCCRLVEAR----------------------RGNSGLEAILVFLEMLKEGM-KLD 254

Query: 353 SITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFE 412
            ++    ++A G     E+  Q+H +A + G+  +  V N LIS+YSKC +++ A +VFE
Sbjct: 255 HVSFTGAISACGHGKEFELGRQIHSLAVKIGYDTHVKVCNVLISTYSKCEDIEDAKLVFE 314

Query: 413 EMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTN 472
            +   R+VVSW T+I     +   E A +L+++M   G  P+  T++ +++A     L  
Sbjct: 315 SI-IDRNVVSWTTMI-----SISEEDATSLFNEMRRDGVYPNDVTFVGLIHAITMKNLVE 368

Query: 473 DGLVI 477
           +G +I
Sbjct: 369 EGQMI 373



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 117/269 (43%), Gaps = 22/269 (8%)

Query: 234 DALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSII 293
           +AL +F++  +   + +   +   I + A  GD K G Q+HA  +  G  S + + NS++
Sbjct: 61  EALDLFKKQLQWGFVGNIDQVTVAIVLKACCGDSKLGCQIHAFAISSGFISHVTVPNSLM 120

Query: 294 AMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDS 353
            MY K G  D +  VF  +    +VSW  ++SG+ +   + +ALN  ++M      + D+
Sbjct: 121 NMYCKAGLFDRALVVFENLNNPDIVSWNTVLSGFQR---SDDALNFALRMNFTGV-AFDA 176

Query: 354 ITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC--------GNVD 405
           +T  ++L    +        QLH    + G      V N LI+ YS+C        GN  
Sbjct: 177 VTCTTVLAFCSDHEGFIFGFQLHSRILKCGLDCEVFVGNALITMYSRCCRLVEARRGNSG 236

Query: 406 L-AYIVFEEM---GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG---EVPDSSTY 458
           L A +VF EM   G   D VS+   I   G     E    ++    + G    V   +  
Sbjct: 237 LEAILVFLEMLKEGMKLDHVSFTGAISACGHGKEFELGRQIHSLAVKIGYDTHVKVCNVL 296

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKV 487
           +S  + C       D  ++F  +I+ N V
Sbjct: 297 ISTYSKCED---IEDAKLVFESIIDRNVV 322



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 87/182 (47%), Gaps = 35/182 (19%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ L++ Y K   + ++  +F+E+  + ++SW+ +I GY+ NG  +++++ F    LS L
Sbjct: 389 SNSLITMYAKFESMSDSMKVFEELNYREIISWNSLISGYAQNGLWQEALQTF----LSAL 444

Query: 68  L---PNSFTMVGVL--VAAAGLQNLELARSIHGLMVKFGLES---------DLF------ 107
           +   PN FT   VL  +A+A   ++   +  H  ++K GL +         D++      
Sbjct: 445 MESRPNEFTFGSVLSSIASAEAISMRHGQRCHSHILKLGLNTNPIVSSALLDMYAKRGSI 504

Query: 108 ---------EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                      LKN   V+  AI++    +  ++  + LF      G+ P+++T L VI 
Sbjct: 505 CESLGVFSETPLKNE--VAWTAIISAHARHGDYEAVMNLFKDMEREGVKPDSITFLAVIT 562

Query: 159 GC 160
            C
Sbjct: 563 AC 564



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 49/96 (51%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           +P  SS LL  Y K G I E+  +F E P KN V+W+ +I  ++ +G +E  M  F  M 
Sbjct: 487 NPIVSSALLDMYAKRGSICESLGVFSETPLKNEVAWTAIISAHARHGDYEAVMNLFKDME 546

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK 99
             G+ P+S T + V+ A      ++    +   MVK
Sbjct: 547 REGVKPDSITFLAVITACGRKGMVDTGYQLFNSMVK 582


>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Brachypodium distachyon]
          Length = 796

 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 147/486 (30%), Positives = 241/486 (49%), Gaps = 34/486 (6%)

Query: 91  RSIHGLMVKFGLESD----------------------LFEGLKNPYLVSCNAIVAGFINN 128
           R +H L V  G  +D                      +F+ + +P  V  N ++AG   +
Sbjct: 143 RPLHALAVASGFAADNFVASALAKLYFTLSRGNDARKVFDAVPSPDTVLWNTLLAGLSGS 202

Query: 129 KLFQQAVLLFNFFRGSGLV-PNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSV 187
               +A+  F    G+G V P++ T+ +V+     + +  +   +H    K GL     V
Sbjct: 203 ----EALEAFVRMAGAGSVRPDSTTLASVLPAAAEVANTTMGRCVHAFGEKCGLAQHEHV 258

Query: 188 NNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRI 247
              ++ +Y+   D++ A  +F  ME  D++++  ++  +      G ++++F+E+    +
Sbjct: 259 VTGLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELFKELVGMGL 318

Query: 248 ICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRS 307
              +  L+ LI V++  G       LHA VV  GL +   +S ++  +Y +  D+DS+R 
Sbjct: 319 RPSSSTLVALIPVHSPFGHEPLAGCLHAHVVKAGLDANAPVSTALTTLYCRFNDMDSARR 378

Query: 308 VFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELA 367
            F+ + EK++ SW A+ISGY QNG    A+  F +M Q      + +T+ S L+A  +L 
Sbjct: 379 AFDAMPEKTMESWNAMISGYAQNGLTEMAVALFQQM-QALNVRPNPLTISSALSACAQLG 437

Query: 368 ALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
           AL +   +H I           V   LI  Y KCG++  A  +F+ M   ++VVSWN +I
Sbjct: 438 ALSLGKWVHKIIANEKLELNVYVMTALIDMYVKCGSIAEARCIFDSMDN-KNVVSWNVMI 496

Query: 428 YGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKV 487
            GYG++G G  AL LY  M +    P SST+LS+L AC H GL  +G  +F  M  +  +
Sbjct: 497 SGYGLHGQGAEALKLYKDMMDAHLHPTSSTFLSVLYACSHGGLVKEGTTVFRSMTSDYGI 556

Query: 488 KPSQEHYGCVVDLLARAGCLSDASGLAGKLLE-GMGPNIWRALLSGCVLHVGRFQDAEAL 546
            P  EH  C+VDLL RAG L +A  L  +  +  +GP IW ALL  C++H    +D +  
Sbjct: 557 TPGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVGPGIWGALLGACMVH----KDGDLA 612

Query: 547 RSGSQK 552
           +  SQK
Sbjct: 613 KLASQK 618



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 124/498 (24%), Positives = 225/498 (45%), Gaps = 58/498 (11%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + +S L   YF   +  +A  +FD +P  + V W+ ++ G S +    ++++AF  M 
Sbjct: 157 DNFVASALAKLYFTLSRGNDARKVFDAVPSPDTVLWNTLLAGLSGS----EALEAFVRMA 212

Query: 64  LSG-LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
            +G + P+S T+  VL AAA + N  + R +H    K GL                    
Sbjct: 213 GAGSVRPDSTTLASVLPAAAEVANTTMGRCVHAFGEKCGLAQHEHVVTGLISLYAKCGDM 272

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                LF+ ++ P LV+ NA+++G+  N +   +V LF    G GL P++ T++ +I   
Sbjct: 273 ECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELFKELVGMGLRPSSSTLVALIPVH 332

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
              G   L   +H   +K GL  +  V+ ++  +Y    D+D+A + F  M  K + SW 
Sbjct: 333 SPFGHEPLAGCLHAHVVKAGLDANAPVSTALTTLYCRFNDMDSARRAFDAMPEKTMESWN 392

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+  +        A+ +F++M+   +  + + + + +S  A LG L  GK +H  +   
Sbjct: 393 AMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQLGALSLGKWVHKIIANE 452

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
            L+  + +  ++I MY KCG +  +R +F+ +  K++VSW  +ISGY  +G   EAL  +
Sbjct: 453 KLELNVYVMTALIDMYVKCGSIAEARCIFDSMDNKNVVSWNVMISGYGLHGQGAEALKLY 512

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN-------- 392
             M         S T +S+L A             HG   + G   +RS+ +        
Sbjct: 513 KDMMDAHLHPTSS-TFLSVLYACS-----------HGGLVKEGTTVFRSMTSDYGITPGI 560

Query: 393 ----CLISSYSKCGNVDLAYIVFEEMGFLRDVVS---WNTIIYGYGVNGHGETALALYHK 445
               C++    + G +  A+ +  E  F +  V    W  ++    V+  G+ A     K
Sbjct: 561 EHCTCMVDLLGRAGQLKEAFELISE--FPKSAVGPGIWGALLGACMVHKDGDLAKLASQK 618

Query: 446 MTETGEVPDSSTYLSILN 463
           + E    P+++ Y  +L+
Sbjct: 619 LFELE--PENTGYYVLLS 634


>gi|115480595|ref|NP_001063891.1| Os09g0555400 [Oryza sativa Japonica Group]
 gi|113632124|dbj|BAF25805.1| Os09g0555400 [Oryza sativa Japonica Group]
 gi|125606583|gb|EAZ45619.1| hypothetical protein OsJ_30287 [Oryza sativa Japonica Group]
          Length = 644

 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 141/464 (30%), Positives = 235/464 (50%), Gaps = 37/464 (7%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           LF+ + +P     N+++  + N+   Q+A+ L       G++PN  T+  +++ C  + +
Sbjct: 66  LFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACARVQA 125

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
                + HG+ +KLG +  V V N++L  Y+    L  + + F EM  ++V+SW  M+  
Sbjct: 126 WEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMING 185

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +       +A  +F  MR+  ++ D   L++L+   +  G+L+ GK +H+ +++ G + +
Sbjct: 186 YAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRID 245

Query: 286 LRLSNSIIAMYSKCGDL-------------------------------DSSRSVFNQITE 314
           L L+N+++ MY KCGDL                               D++R  F QI E
Sbjct: 246 LILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQIPE 305

Query: 315 KSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQ 374
           KS++SW A+IS YVQ G   EAL+ + +M+     + D  TL ++L+A G+L  L     
Sbjct: 306 KSIISWNAMISCYVQGGRFHEALDLYNRMKLLGL-APDEFTLAAVLSACGQLGDLASGKM 364

Query: 375 LHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNG 434
           +H    +       ++ N L+  Y++CG VD A  +F EM   ++V+SWN II    ++G
Sbjct: 365 IHDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMPS-KNVISWNAIIGALAMHG 423

Query: 435 HGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY 494
             + AL  +  M      PD  T++++L+AC H GL   G   F  M     VKP  EHY
Sbjct: 424 RAQDALMFFRSMVFDAFPPDEITFVALLSACNHGGLLEAGQYYFQAMRHVYNVKPGVEHY 483

Query: 495 GCVVDLLARAGCLSDASGLAGKLLEGMGPN--IWRALLSGCVLH 536
            C+VDLL R G L+ A  L   +   M P+  +W ALL  C +H
Sbjct: 484 ACMVDLLGRGGQLAKAVDLIKDM--PMRPDVVVWGALLGACRIH 525



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 127/496 (25%), Positives = 223/496 (44%), Gaps = 80/496 (16%)

Query: 8   SSKLLSNYFK---SGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML 64
           +S++L++Y      G +  A  LFD IP+ +   ++ +I  Y  +   ++++     M+ 
Sbjct: 44  TSQILASYCALPAGGGVWYARQLFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIR 103

Query: 65  SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPY-------- 114
            G+LPN FT+  +L A A +Q  E     HG++VK G    +F G  L + Y        
Sbjct: 104 RGILPNEFTLPFLLKACARVQAWEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGD 163

Query: 115 ------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA 162
                       +VS N+++ G+      ++A  LF   R  GL+ +  T+++++  C A
Sbjct: 164 SRRFFDEMVDRNVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSA 223

Query: 163 LGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDL--------------------- 201
            G+    +L+H   +  G  +D+ + N+++DMY    DL                     
Sbjct: 224 EGNLEFGKLVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSM 283

Query: 202 ----------DAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDT 251
                     DAA   F ++  K +ISW  M+  +V      +AL ++  M+   +  D 
Sbjct: 284 LCALAKRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDE 343

Query: 252 VALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQ 311
             L  ++S    LGDL  GK +H  +        + L NS++ MY++CG +D++ S+F++
Sbjct: 344 FTLAAVLSACGQLGDLASGKMIHDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSE 403

Query: 312 ITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEI 371
           +  K+++SW AII     +G A++AL  F  M  +     D IT V++L+A         
Sbjct: 404 MPSKNVISWNAIIGALAMHGRAQDALMFFRSMVFDAFPP-DEITFVALLSACN------- 455

Query: 372 CLQLHGIAFEAG---FPRYRSVQN---------CLISSYSKCGNVDLAYIVFEEMGFLRD 419
               HG   EAG   F   R V N         C++    + G +  A  + ++M    D
Sbjct: 456 ----HGGLLEAGQYYFQAMRHVYNVKPGVEHYACMVDLLGRGGQLAKAVDLIKDMPMRPD 511

Query: 420 VVSWNTIIYGYGVNGH 435
           VV W  ++    ++GH
Sbjct: 512 VVVWGALLGACRIHGH 527



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 100/372 (26%), Positives = 166/372 (44%), Gaps = 38/372 (10%)

Query: 204 AIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAI 263
           A Q+F  +   D   +  ++  + +     +AL + R M +  I+ +   L  L+   A 
Sbjct: 63  ARQLFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACAR 122

Query: 264 LGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAI 323
           +   +     H  VV  G   ++ + N+++  Y+  G L  SR  F+++ ++++VSW ++
Sbjct: 123 VQAWEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSM 182

Query: 324 ISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG 383
           I+GY Q G  REA + F  MR++     D  TLVS+L A      LE    +H      G
Sbjct: 183 INGYAQAGNTREACSLFEGMRRQGL-LADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRG 241

Query: 384 FPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGF---------------------LRD--- 419
                 + N L+  Y KCG++ +A+  F+ M F                      RD   
Sbjct: 242 CRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFE 301

Query: 420 ------VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTND 473
                 ++SWN +I  Y   G    AL LY++M   G  PD  T  ++L+ACG  G    
Sbjct: 302 QIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLAS 361

Query: 474 GLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI--WRALLS 531
           G +I +  I +N   P    +  ++D+ AR G +  A  L  ++      N+  W A++ 
Sbjct: 362 GKMI-HDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMPS---KNVISWNAIIG 417

Query: 532 GCVLHVGRFQDA 543
              +H GR QDA
Sbjct: 418 ALAMH-GRAQDA 428


>gi|357441891|ref|XP_003591223.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480271|gb|AES61474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 606

 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 135/430 (31%), Positives = 234/430 (54%), Gaps = 5/430 (1%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           LF+ + +  +++  +++ G+ +     +A  +F      G+ PNA T+  V++ C +L +
Sbjct: 63  LFDEMPHRDVIAWTSMITGYTSCNHHSRAWNVFTNMLRDGVKPNAFTVSAVLKACKSLKA 122

Query: 166 RALCELIHGLTIKLGLI-LDVSVNNSVLDMY-SCLMDLDAAIQIFREMECKDVISWTRMM 223
               +L+HGL IK+G     + V+N+++DMY +C   +D A  +F ++  K+ +SWT ++
Sbjct: 123 LLCGKLVHGLAIKIGTQGSSIYVDNALMDMYATCCDSMDNARLVFEDIGTKNAVSWTTLI 182

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
             +     A   L++FR+M          +    +S  A +G    GKQ+HA V+  G +
Sbjct: 183 TGYTHRRDAFGGLRVFRQMFMEEGELSPFSFSIAVSACASIGSSNLGKQVHAAVINHGFE 242

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
           S L + N+I+ MY +C     ++ +F ++T+K  ++W  +I+G+ +   + E+L  F +M
Sbjct: 243 SNLPVMNAILDMYCRCRCASEAKQLFGEMTQKDTITWNTLIAGF-ETLDSYESLCIFSQM 301

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
             E   S +  T  S++ A   LA L    QLHG     G      + N LI  Y+KCGN
Sbjct: 302 VSEGF-SPNCFTFTSVIAACANLAILYCGQQLHGGIIHRGLDNNLELSNALIDMYAKCGN 360

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           V  ++ +F  M    ++VSW +++ GYG +GHG+ A+ L+++M  +G  PD   ++++L+
Sbjct: 361 VADSHKIFSGMRH-TNLVSWTSMMIGYGAHGHGKEAVDLFNEMVGSGIKPDKIVFMAVLS 419

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
           AC HAGL ++GL  F  M     V P ++ Y CVVDLL+RAG + +A  L   +      
Sbjct: 420 ACSHAGLVDEGLRYFRLMTSYYNVAPDRDIYACVVDLLSRAGRVKEAYELIENMPFKPDE 479

Query: 524 NIWRALLSGC 533
           +IW ALL  C
Sbjct: 480 SIWVALLGAC 489



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 122/444 (27%), Positives = 218/444 (49%), Gaps = 33/444 (7%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ L+ +YF  G  +EA  LFDE+P ++V++W+ +I GY+    H ++   F++M+  G+
Sbjct: 44  TTDLIKSYFDKGSFEEAHTLFDEMPHRDVIAWTSMITGYTSCNHHSRAWNVFTNMLRDGV 103

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
            PN+FT+  VL A   L+ L   + +HGL +K G +                        
Sbjct: 104 KPNAFTVSAVLKACKSLKALLCGKLVHGLAIKIGTQGSSIYVDNALMDMYATCCDSMDNA 163

Query: 106 --LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFN--FFRGSGLVPNAVTMLTVIRGCV 161
             +FE +     VS   ++ G+ + +     + +F   F     L P + ++   +  C 
Sbjct: 164 RLVFEDIGTKNAVSWTTLITGYTHRRDAFGGLRVFRQMFMEEGELSPFSFSI--AVSACA 221

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
           ++GS  L + +H   I  G   ++ V N++LDMY        A Q+F EM  KD I+W  
Sbjct: 222 SIGSSNLGKQVHAAVINHGFESNLPVMNAILDMYCRCRCASEAKQLFGEMTQKDTITWNT 281

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++  F   + + ++L IF +M       +     ++I+  A L  L  G+QLH  ++  G
Sbjct: 282 LIAGFETLD-SYESLCIFSQMVSEGFSPNCFTFTSVIAACANLAILYCGQQLHGGIIHRG 340

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           L + L LSN++I MY+KCG++  S  +F+ +   +LVSWT+++ GY  +G  +EA++ F 
Sbjct: 341 LDNNLELSNALIDMYAKCGNVADSHKIFSGMRHTNLVSWTSMMIGYGAHGHGKEAVDLFN 400

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGI--AFEAGFPRYRSVQNCLISSYS 399
           +M        D I  +++L+A      ++  L+   +  ++    P  R +  C++   S
Sbjct: 401 EMVGSGIKP-DKIVFMAVLSACSHAGLVDEGLRYFRLMTSYYNVAPD-RDIYACVVDLLS 458

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSW 423
           + G V  AY + E M F  D   W
Sbjct: 459 RAGRVKEAYELIENMPFKPDESIW 482



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 122/248 (49%), Gaps = 8/248 (3%)

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
           L+  +I  Y   G  + + ++F+++  + +++WT++I+GY        A N F  M ++ 
Sbjct: 43  LTTDLIKSYFDKGSFEEAHTLFDEMPHRDVIAWTSMITGYTSCNHHSRAWNVFTNMLRDG 102

Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYR-SVQNCLISSYSK-CGNVD 405
               ++ T+ ++L A   L AL     +HG+A + G       V N L+  Y+  C ++D
Sbjct: 103 VKP-NAFTVSAVLKACKSLKALLCGKLVHGLAIKIGTQGSSIYVDNALMDMYATCCDSMD 161

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM-TETGEVPDSSTYLSILNA 464
            A +VFE++G  ++ VSW T+I GY         L ++ +M  E GE+   S  +++ +A
Sbjct: 162 NARLVFEDIG-TKNAVSWTTLITGYTHRRDAFGGLRVFRQMFMEEGELSPFSFSIAV-SA 219

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C   G +N G  +   +I     + +      ++D+  R  C S+A  L G++ +     
Sbjct: 220 CASIGSSNLGKQVHAAVINHG-FESNLPVMNAILDMYCRCRCASEAKQLFGEMTQK-DTI 277

Query: 525 IWRALLSG 532
            W  L++G
Sbjct: 278 TWNTLIAG 285


>gi|302766669|ref|XP_002966755.1| hypothetical protein SELMODRAFT_85926 [Selaginella moellendorffii]
 gi|300166175|gb|EFJ32782.1| hypothetical protein SELMODRAFT_85926 [Selaginella moellendorffii]
          Length = 811

 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 159/600 (26%), Positives = 286/600 (47%), Gaps = 39/600 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDE--IPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           D   ++ L+  Y K G + +A  +FD+  +  K +  W+ ++ GY+++G   ++++ +  
Sbjct: 59  DDLVATALVDMYSKCGSLDDARRVFDDYSVDSKRMALWTAMVSGYALHGHSRQALELYQR 118

Query: 62  MM-LSGLLPNSFTMVGVLVAAAGLQNLELARSIH----------------GLMVKFGLES 104
            + +S   P++  ++  + A +  + L+  R+IH                GL+  +G   
Sbjct: 119 FLSVSSEPPDTVMLLSAITACSSAEFLDDGRAIHAQISSRELDHHTHLGNGLVNMYGRCK 178

Query: 105 DL------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
           +L      FE +    LVS N I+  +        A+ LF      G+  +AVT L V+ 
Sbjct: 179 ELHRARKAFEKITAKNLVSWNVIIGAYAQEGHRGHAMELFQRMDPEGVAADAVTFLHVLD 238

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C  + +      IH      GL  DV V +S+++ Y     L  A ++F  M  K+ ++
Sbjct: 239 ACGGVEAAGDVRRIHKKLELSGLEWDVFVASSLVNAYGKCGCLAEAKRVFDTMPLKNTVT 298

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
            T M+  +       +AL+I+REM       D V  ++ +   + +G L +G+ +H++++
Sbjct: 299 MTSMLAAYAQHGLGEEALEIYREMESQGRKADRVTFISALDACSSIGALSQGRAIHSRLL 358

Query: 279 LGGL--QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
           + G+  Q ++ L  +++ MY +CG LD+++S+F+ + +K+ ++W A++  Y Q G  +EA
Sbjct: 359 VSGIIQQPDVVLGTALLNMYGRCGVLDAAKSLFDGMADKNTITWNALMGSYAQWGYGKEA 418

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
           LN +  M  +     +S+T +++LTA   + AL      H     AGF +   V   L++
Sbjct: 419 LNLYHSMDAQP----NSLTFLAMLTACSTVGALLQGRAAHARLAPAGFEKEVEVGVALVN 474

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
            Y KCG+++ A   F ++   + VV+W   +     +G     L L+ +M   G  PDS 
Sbjct: 475 MYGKCGSLEDALGTFAKLE-RKTVVTWTVAMLALAHHGEFRETLRLFTEMELDGVAPDSV 533

Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK 516
             L+ L AC H+G   +G   F  MI++  V P+  HY CVVDLL R G L  A  L   
Sbjct: 534 ALLAALFACSHSGKLKEGRSYFTNMIQDYGVSPTLAHYDCVVDLLCRTGLLGRAEELIDS 593

Query: 517 LLEGMGPNIWRALLSGCVLHVGRFQDA-----EALRSGSQKKGIIKIPGISFLNSTSRDF 571
           +        W  LL+ C  H   +  A     +AL +     GI     +S++ S  R +
Sbjct: 594 MPFEPSAVTWTTLLAACRTHSTLYDKAKVAADKALETEPHNAGIYF--ALSYMYSGVRTY 651


>gi|15242550|ref|NP_196557.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170796|sp|Q9FIB2.1|PP373_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g09950
 gi|9758973|dbj|BAB09416.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332004087|gb|AED91470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 995

 Score =  229 bits (584), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 164/570 (28%), Positives = 280/570 (49%), Gaps = 40/570 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM- 62
           D +  S L+S + KSG +  A  +F+++  +N V+ + ++ G     + E++ K F  M 
Sbjct: 242 DLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMN 301

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQN---LELARSIHGLMVKFGLESDLF---EGLKNPYL- 115
            +  + P S+ ++        L     L+  R +HG ++  GL   +     GL N Y  
Sbjct: 302 SMIDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAK 361

Query: 116 -------------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTV 156
                              VS N+++ G   N  F +AV  +   R   ++P + T+++ 
Sbjct: 362 CGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISS 421

Query: 157 IRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
           +  C +L    L + IHG ++KLG+ L+VSV+N+++ +Y+    L+   +IF  M   D 
Sbjct: 422 LSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQ 481

Query: 217 ISWTRMMGLFVDFEYA-GDALKIFREMRKS--RIICDTVALLNLISVNAILGDLKRGKQL 273
           +SW  ++G     E +  +A+  F   +++  ++   T + +     +   G+L  GKQ+
Sbjct: 482 VSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGEL--GKQI 539

Query: 274 HAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK-SLVSWTAIISGYVQNGC 332
           H   +   +  E    N++IA Y KCG++D    +F+++ E+   V+W ++ISGY+ N  
Sbjct: 540 HGLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNEL 599

Query: 333 AREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN 392
             +AL+    M Q     +DS    ++L+A   +A LE  +++H  +  A       V +
Sbjct: 600 LAKALDLVWFMLQ-TGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGS 658

Query: 393 CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV 452
            L+  YSKCG +D A   F  M  +R+  SWN++I GY  +G GE AL L+  M   G+ 
Sbjct: 659 ALVDMYSKCGRLDYALRFFNTMP-VRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQT 717

Query: 453 P-DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDAS 511
           P D  T++ +L+AC HAGL  +G   F  M +   + P  EH+ C+ D+L RAG L    
Sbjct: 718 PPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLE 777

Query: 512 GLAGKLLEGMGPN--IWRALLSGCVLHVGR 539
               K+   M PN  IWR +L  C    GR
Sbjct: 778 DFIEKM--PMKPNVLIWRTVLGACCRANGR 805



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 125/456 (27%), Positives = 220/456 (48%), Gaps = 34/456 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + L++ Y ++G    A  +FDE+P +N VSW+ ++ GYS NG H++++     M+
Sbjct: 35  DVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEHKEALVFLRDMV 94

Query: 64  LSGLLPNSFTMVGVLVAAA--GLQNLELARSIHGLMVKFGLESD---------------- 105
             G+  N +  V VL A    G   +   R IHGLM K     D                
Sbjct: 95  KEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVSNVLISMYWKCIG 154

Query: 106 -------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                   F  ++    VS N+I++ +      + A  +F+  +  G  P   T  +++ 
Sbjct: 155 SVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSLVT 214

Query: 159 GCVALGSR--ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
              +L      L E I     K GL+ D+ V + ++  ++    L  A ++F +ME ++ 
Sbjct: 215 TACSLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNA 274

Query: 217 ISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDT--VALLNLISVNAILGD--LKRGKQ 272
           ++   +M   V  ++  +A K+F +M     +     V LL+     ++  +  LK+G++
Sbjct: 275 VTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPESYVILLSSFPEYSLAEEVGLKKGRE 334

Query: 273 LHAQVVLGGLQSEL-RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNG 331
           +H  V+  GL   +  + N ++ MY+KCG +  +R VF  +T+K  VSW ++I+G  QNG
Sbjct: 335 VHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNG 394

Query: 332 CAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ 391
           C  EA+ ++  MR+       S TL+S L++   L   ++  Q+HG + + G     SV 
Sbjct: 395 CFIEAVERYKSMRRHDILP-GSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVS 453

Query: 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
           N L++ Y++ G ++    +F  M    D VSWN+II
Sbjct: 454 NALMTLYAETGYLNECRKIFSSMP-EHDQVSWNSII 488



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 137/512 (26%), Positives = 239/512 (46%), Gaps = 44/512 (8%)

Query: 3   IDPYNSSKLLSNYFKS-GKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           +D   S+ L+S Y+K  G +  A   F +I  KN VSW+ +I  YS  G    + + FS 
Sbjct: 137 VDAVVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSS 196

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQ--NLELARSIHGLMVKFGLESDLFEG---------- 109
           M   G  P  +T   ++  A  L   ++ L   I   + K GL +DLF G          
Sbjct: 197 MQYDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKS 256

Query: 110 ------------LKNPYLVSCNAIVAGFINNKLFQQAVLLF-NFFRGSGLVPNAVTMLTV 156
                       ++    V+ N ++ G +  K  ++A  LF +      + P +  +L  
Sbjct: 257 GSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPESYVILLS 316

Query: 157 IRGCVALGSRALCEL---IHGLTIKLGLI-LDVSVNNSVLDMYSCLMDLDAAIQIFREME 212
                +L      +    +HG  I  GL+   V + N +++MY+    +  A ++F  M 
Sbjct: 317 SFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMT 376

Query: 213 CKDVISWTRMM------GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGD 266
            KD +SW  M+      G F++      A++ ++ MR+  I+  +  L++ +S  A L  
Sbjct: 377 DKDSVSWNSMITGLDQNGCFIE------AVERYKSMRRHDILPGSFTLISSLSSCASLKW 430

Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISG 326
            K G+Q+H + +  G+   + +SN+++ +Y++ G L+  R +F+ + E   VSW +II  
Sbjct: 431 AKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGA 490

Query: 327 YVQNGCA-REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFP 385
             ++  +  EA+  F+   Q     ++ IT  S+L+A   L+  E+  Q+HG+A +    
Sbjct: 491 LARSERSLPEAVVCFLNA-QRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKNNIA 549

Query: 386 RYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHK 445
              + +N LI+ Y KCG +D    +F  M   RD V+WN++I GY  N     AL L   
Sbjct: 550 DEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWF 609

Query: 446 MTETGEVPDSSTYLSILNACGHAGLTNDGLVI 477
           M +TG+  DS  Y ++L+A         G+ +
Sbjct: 610 MLQTGQRLDSFMYATVLSAFASVATLERGMEV 641



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 117/227 (51%), Gaps = 9/227 (3%)

Query: 260 VNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVS 319
           V + +G     +  H+++    L  ++ L N++I  Y + GD  S+R VF+++  ++ VS
Sbjct: 10  VQSCVGHRGAARFFHSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVS 69

Query: 320 WTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICL--QLHG 377
           W  I+SGY +NG  +EAL     M +E   S +    VS+L A  E+ ++ I    Q+HG
Sbjct: 70  WACIVSGYSRNGEHKEALVFLRDMVKEGIFS-NQYAFVSVLRACQEIGSVGILFGRQIHG 128

Query: 378 IAFEAGFPRYRSVQNCLISSYSKC-GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHG 436
           + F+  +     V N LIS Y KC G+V  A   F ++  +++ VSWN+II  Y   G  
Sbjct: 129 LMFKLSYAVDAVVSNVLISMYWKCIGSVGYALCAFGDIE-VKNSVSWNSIISVYSQAGDQ 187

Query: 437 ETALALYHKMTETGEVPDSSTYLSIL-NACGHAGLTNDGLVIFNQMI 482
            +A  ++  M   G  P   T+ S++  AC    LT   + +  Q++
Sbjct: 188 RSAFRIFSSMQYDGSRPTEYTFGSLVTTAC---SLTEPDVRLLEQIM 231


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  229 bits (584), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 156/566 (27%), Positives = 284/566 (50%), Gaps = 38/566 (6%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ L++ Y K G       +FD I E+N VSW+ +I         E +++AF  M+   +
Sbjct: 132 ANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDV 191

Query: 68  LPNSFTMVGVLVA-----------------AAGLQNLELAR-------SIHGLMVKFGLE 103
            P+SFT+V V +A                 A GL+  EL         +++G M K    
Sbjct: 192 EPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKGELNSFIINTLVAMYGKMGKLASS 251

Query: 104 SDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
             L    +   LV+ N +++    N+ F +A+         G+ P+  T+ +V+  C  L
Sbjct: 252 KVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHL 311

Query: 164 GSRALCELIHGLTIKLGLILDVS-VNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
                 + +H   +K G + + S V ++++DMY     + +  ++F  M  + +  W  M
Sbjct: 312 EMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAM 371

Query: 223 MGLFVDFEYAGDALKIFREMRKSR-IICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           +  +   EY  +AL +F EM +S  ++ ++  +  ++      G   + + +H  VV  G
Sbjct: 372 ITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKKEAIHGFVVKRG 431

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           L  +  + N+++ MYS+ G +D ++ +F ++ ++ LV+W  II+GYV +    +AL    
Sbjct: 432 LDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVFSERHEDALLMLH 491

Query: 342 KMR------QEKTDSV----DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ 391
           KM+       E+   V    +SITL++IL +   L+AL    ++H  A +       +V 
Sbjct: 492 KMQILERKASERASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVG 551

Query: 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE 451
           + L+  Y+KCG + ++  VF+++  +R+V++WN I+  YG++G+ + A+ +   M   G 
Sbjct: 552 SALVDMYAKCGCLQMSRKVFDQIP-IRNVITWNVIVMAYGMHGNSQDAIDMLRMMMVQGV 610

Query: 452 VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDAS 511
            P+  T++S+  AC H+G+ N+GL IF  M ++  V+PS +HY CVVDLL RAG + +A 
Sbjct: 611 KPNEVTFISVFAACSHSGMVNEGLKIFYNMKKDYGVEPSSDHYACVVDLLGRAGRVKEAY 670

Query: 512 GLAGKLLEGMGP-NIWRALLSGCVLH 536
            L   +         W +LL  C +H
Sbjct: 671 QLINLIPRNFDKAGAWSSLLGACRIH 696



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 123/484 (25%), Positives = 224/484 (46%), Gaps = 41/484 (8%)

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------- 105
           M++ G+ P++F    +L A A LQ+++L + IH  + KFG   D                
Sbjct: 84  MIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG 143

Query: 106 -------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                  +F+ +     VS N++++   + + ++ A+  F       + P++ T+++V  
Sbjct: 144 DFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDVEPSSFTLVSVAL 203

Query: 159 GCVALGSRA---LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKD 215
            C          + + +H   ++ G  L+  + N+++ MY  +  L ++  +    E +D
Sbjct: 204 ACSNFPMPEGLLMGKQVHAYGLRKGE-LNSFIINTLVAMYGKMGKLASSKVLLGSFEGRD 262

Query: 216 VISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
           +++W  ++      E   +AL+  REM    +  D   + +++   + L  L+ GK+LHA
Sbjct: 263 LVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHA 322

Query: 276 QVVL-GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
             +  G L     + ++++ MY  C  + S   VF+ + ++ +  W A+I+GY QN    
Sbjct: 323 YALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDE 382

Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
           EAL  FI+M +      +S T+  ++ A     A      +HG   + G  R R VQN L
Sbjct: 383 EALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKKEAIHGFVVKRGLDRDRFVQNAL 442

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM-------- 446
           +  YS+ G +D+A  +F +M   RD+V+WNTII GY  +   E AL + HKM        
Sbjct: 443 MDMYSRLGKIDIAKRIFGKMED-RDLVTWNTIITGYVFSERHEDALLMLHKMQILERKAS 501

Query: 447 ---TETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLAR 503
              +     P+S T ++IL +C        G  I    I +N +         +VD+ A+
Sbjct: 502 ERASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAI-KNNLATDVAVGSALVDMYAK 560

Query: 504 AGCL 507
            GCL
Sbjct: 561 CGCL 564



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 115/429 (26%), Positives = 198/429 (46%), Gaps = 22/429 (5%)

Query: 126 INNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILD- 184
           + + L ++AVL +      G+ P+      +++    L    L + IH    K G  +D 
Sbjct: 69  VRSNLLREAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVYKFGYGVDS 128

Query: 185 VSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRK 244
           V+V N+++++Y    D  A  ++F  +  ++ +SW  ++     FE    AL+ FR M  
Sbjct: 129 VTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLD 188

Query: 245 SRIICDTVALLN--LISVNAILGD-LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGD 301
             +   +  L++  L   N  + + L  GKQ+HA  +  G  +   + N+++AMY K G 
Sbjct: 189 EDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKGELNSF-IINTLVAMYGKMGK 247

Query: 302 LDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILT 361
           L SS+ +      + LV+W  ++S   QN    EAL    +M  E  +  D  T+ S+L 
Sbjct: 248 LASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEP-DGFTISSVLP 306

Query: 362 ASGELAALEICLQLHGIAFEAGFPRYRS-VQNCLISSYSKCGNVDLAYIVFEEMGFLRDV 420
           A   L  L    +LH  A + G     S V + L+  Y  C  V     VF+ M F R +
Sbjct: 307 ACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGM-FDRKI 365

Query: 421 VSWNTIIYGYGVNGHGETALALYHKMTET-GEVPDSSTYLSILNACGHAGLTND-----G 474
             WN +I GY  N + E AL L+ +M E+ G + +S+T   ++ AC  +G  +      G
Sbjct: 366 GLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKKEAIHG 425

Query: 475 LVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCV 534
            V+   +  +  V+        ++D+ +R G +  A  + GK +E      W  +++G V
Sbjct: 426 FVVKRGLDRDRFVQ------NALMDMYSRLGKIDIAKRIFGK-MEDRDLVTWNTIITGYV 478

Query: 535 LHVGRFQDA 543
               R +DA
Sbjct: 479 FS-ERHEDA 486



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 136/307 (44%), Gaps = 23/307 (7%)

Query: 250 DTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE-LRLSNSIIAMYSKCGDLDSSRSV 308
           D  A   L+   A L D+  GKQ+HA V   G   + + ++N+++ +Y KCGD  +   V
Sbjct: 92  DNFAFPALLKAVADLQDMDLGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKV 151

Query: 309 FNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAA 368
           F++I+E++ VSW ++IS          AL  F  M  E  +   S TLVS+  A      
Sbjct: 152 FDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDVEP-SSFTLVSVALACSNFPM 210

Query: 369 LEICL---QLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIV---FEEMGFLRDVVS 422
            E  L   Q+H      G      + N L++ Y K G +  + ++   FE     RD+V+
Sbjct: 211 PEGLLMGKQVHAYGLRKG-ELNSFIINTLVAMYGKMGKLASSKVLLGSFEG----RDLVT 265

Query: 423 WNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMI 482
           WNT++     N     AL    +M   G  PD  T  S+L AC H  +   G  +    +
Sbjct: 266 WNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAYAL 325

Query: 483 EENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN---IWRALLSGCVLHVGR 539
           +   +  +      +VD+     C    SG   ++ +GM      +W A+++G   +   
Sbjct: 326 KNGSLDENSFVGSALVDMY--CNCKQVLSGC--RVFDGMFDRKIGLWNAMITG---YAQN 378

Query: 540 FQDAEAL 546
             D EAL
Sbjct: 379 EYDEEAL 385



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 99/231 (42%), Gaps = 39/231 (16%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSM------- 56
           D +  + L+  Y + GKI  A+ +F ++ ++++V+W+ +I GY  +  HE ++       
Sbjct: 435 DRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVFSERHEDALLMLHKMQ 494

Query: 57  ----KAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------- 105
               KA        L PNS T++ +L + A L  L   + IH   +K  L +D       
Sbjct: 495 ILERKASERASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSAL 554

Query: 106 ---------------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNA 150
                          +F+ +    +++ N IV  +  +   Q A+ +       G+ PN 
Sbjct: 555 VDMYAKCGCLQMSRKVFDQIPIRNVITWNVIVMAYGMHGNSQDAIDMLRMMMVQGVKPNE 614

Query: 151 VTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDL 201
           VT ++V   C   G      +  GL I   +  D  V  S  D Y+C++DL
Sbjct: 615 VTFISVFAACSHSGM-----VNEGLKIFYNMKKDYGVEPSS-DHYACVVDL 659


>gi|414585599|tpg|DAA36170.1| TPA: hypothetical protein ZEAMMB73_453858 [Zea mays]
          Length = 829

 Score =  229 bits (584), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 167/564 (29%), Positives = 282/564 (50%), Gaps = 42/564 (7%)

Query: 14  NYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFT 73
            Y   G +     LFD +P++N VSW+ +   Y   G  +++++ F  M+  G+ P   +
Sbjct: 188 RYRGDGSVDVVRRLFDAMPKRNAVSWNTLFGWYVKTGRPQEALEMFVRMLEDGIKPTPVS 247

Query: 74  MVGVLVAAAGLQNLELARSIHGLMVKFGLE--SDLF----------------------EG 109
            V V  A A  ++   +  ++GL+VK G+E  +DLF                      E 
Sbjct: 248 FVNVFPAVAK-EDPSWSFVLYGLLVKHGMEYVNDLFVVSSAIVMFSELGDVQSAWRVFEY 306

Query: 110 LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVP-NAVTMLTVIRGCVALGSRAL 168
                    N ++ G++ N  F +A+ L      S  VP + VT L+ +          L
Sbjct: 307 AAKKNTEVWNTMITGYVQNGKFAEAMGLVIRLMVSKEVPLDVVTFLSALTAASQSQDGRL 366

Query: 169 CELIHGLTIK-LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
            + +HG  IK +   L V + N+++ MYS   ++  A ++F  +  KD++SW  M+  FV
Sbjct: 367 GQQLHGYLIKGMHTTLPVILGNALVVMYSRCGNVQTAFELFDRLHEKDIVSWNTMITAFV 426

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
             ++  + L +  +M+KS    D V L  ++S  +  GDL  GKQ H+ ++  G++ E  
Sbjct: 427 QNDFDLEGLLLVYQMQKSGFAADLVTLTAVLSAASNTGDLHIGKQAHSYLIRHGIEGE-G 485

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQI--TEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           L + +I MY+K G ++ ++ VF+     ++  V+W A+I+GY Q G   +A+  F  M +
Sbjct: 486 LESYLIDMYAKSGRIEIAQRVFDDYGNAKRDEVTWNAMIAGYTQTGHPEQAILAFRAMIE 545

Query: 346 EKTDSVDSITLVSILTASGELAALEICL--QLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
              +   S+TL S+L A   L    +C   Q+H  A          V   L+  YSKCG 
Sbjct: 546 ACLEPT-SVTLASVLPACDPLGG-GLCAGKQIHCFALRRCLDTNVFVGTALVDMYSKCGE 603

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           +  A  VF +M   +  VS+ T+I G G +G G++AL+L++ M E G  PD  T+L+ ++
Sbjct: 604 ISTAEHVFADMT-EKSTVSYTTMISGLGQHGFGKSALSLFYSMQEKGLKPDGVTFLAAIS 662

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL-LEGMG 522
           AC ++GL ++GL ++  M E   V  + +H  C+VD+LA+AG + +A     +L  EG  
Sbjct: 663 ACNYSGLVDEGLALYRSM-ETFGVVVTPQHRCCIVDMLAKAGRVEEAYEFVQELGEEGDF 721

Query: 523 PNIWRALLSGCVLHVGRFQDAEAL 546
            +IW  LL+ C     + QD + L
Sbjct: 722 VSIWGTLLASC-----KAQDKQEL 740



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 110/433 (25%), Positives = 205/433 (47%), Gaps = 27/433 (6%)

Query: 119 NAIVAGFINNKLFQQAVLLFNFF-RGSGLVPNA--VTMLTVIRGCVALGSRALCELIHGL 175
           NA++  ++   L + A+ L+      +   P +   T    +  C       L + +H  
Sbjct: 102 NALLIAYVARALPEHALRLYALLNHAARPTPRSDHYTYSCALTACARTRRLRLGKSVHAH 161

Query: 176 TIKLGLIL-DVSV-NNSVLDMY-SCLM-----DLDAAIQIFREMECKDVISWTRMMGLFV 227
            ++    L D +V  NS+L++Y SC+       +D   ++F  M  ++ +SW  + G +V
Sbjct: 162 LLRRARSLPDTAVLRNSLLNVYASCVRYRGDGSVDVVRRLFDAMPKRNAVSWNTLFGWYV 221

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ--SE 285
                 +AL++F  M +  I    V+ +N+    A   D      L+  +V  G++  ++
Sbjct: 222 KTGRPQEALEMFVRMLEDGIKPTPVSFVNVFPAVAK-EDPSWSFVLYGLLVKHGMEYVND 280

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           L + +S I M+S+ GD+ S+  VF    +K+   W  +I+GYVQNG   EA+   I++  
Sbjct: 281 LFVVSSAIVMFSELGDVQSAWRVFEYAAKKNTEVWNTMITGYVQNGKFAEAMGLVIRLMV 340

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV-QNCLISSYSKCGNV 404
            K   +D +T +S LTA+ +     +  QLHG   +        +  N L+  YS+CGNV
Sbjct: 341 SKEVPLDVVTFLSALTAASQSQDGRLGQQLHGYLIKGMHTTLPVILGNALVVMYSRCGNV 400

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
             A+ +F+ +   +D+VSWNT+I  +  N      L L ++M ++G   D  T  ++L+A
Sbjct: 401 QTAFELFDRL-HEKDIVSWNTMITAFVQNDFDLEGLLLVYQMQKSGFAADLVTLTAVLSA 459

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
             + G  + G    + +I         E Y  ++D+ A++G +     +A ++ +  G  
Sbjct: 460 ASNTGDLHIGKQAHSYLIRHGIEGEGLESY--LIDMYAKSGRIE----IAQRVFDDYGNA 513

Query: 525 -----IWRALLSG 532
                 W A+++G
Sbjct: 514 KRDEVTWNAMIAG 526


>gi|302808039|ref|XP_002985714.1| hypothetical protein SELMODRAFT_459 [Selaginella moellendorffii]
 gi|300146623|gb|EFJ13292.1| hypothetical protein SELMODRAFT_459 [Selaginella moellendorffii]
          Length = 659

 Score =  229 bits (584), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 161/579 (27%), Positives = 280/579 (48%), Gaps = 46/579 (7%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           + LL+ + + G +  A+  F  I  K++++W+ +I   S +     ++  F  M L G+ 
Sbjct: 75  TALLTTFARCGSLDRAKAAFTAIARKDLIAWNAIITATSHSNRSHDALDLFRRMQLDGIH 134

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES-----------------DL----- 106
           PN+ T+V VL  +   ++   AR++H L ++  +++                 DL     
Sbjct: 135 PNAITLVAVL--SIFQESSTDARAVHSLAMESAMDASTVAVGNSIVNMYARCRDLDRARL 192

Query: 107 -FEGLKNPYLVSCNAIVAGFIN-NKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
            F  +++  +VS N +++     ++L   A  +F+     G+  +A T + +  G  A  
Sbjct: 193 AFARIQSKNVVSWNVMISAHSQLDRLHPLA--MFHAMMLEGIKADATTFVNLASGLAAPS 250

Query: 165 SRALCELIHGLTIKLG----LILDVSVNNSVLDMYSCLMDLDAAIQIFRE-MEC--KDVI 217
                EL+H    +LG    LI D  +  S++ M++    +  A +IFRE   C  ++ +
Sbjct: 251 PLRDGELLHRCARELGGGRTLIYDAVLATSLVTMFAKCGSVAHAREIFRENFHCHERNPV 310

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
            W  ++   V      DAL +FR M+   +  D +  ++ I     L D   G+ LH  +
Sbjct: 311 VWNAIIAALVQNHDFSDALLLFRTMQLQGVPSDAITFVSTIDACTALEDFPTGRALHGII 370

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
               L+++  ++ +++  YSK   LD++ + F +I E  LV+W  +I+ +V N  +  AL
Sbjct: 371 SESSLETDTIVATALVNFYSKSRRLDAATAAFQRIHEPDLVAWNVLIAAHVDNANSSTAL 430

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
             F    + K D    IT ++ L A    +AL +  +LH    + G      V + L+  
Sbjct: 431 EIFFHRMELKPDR---ITFITTLAACVTASALPLGRRLHEQIRQRGLHSDVVVASALVDM 487

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           YSKCG+++ AY VF  M   R+  +WN +I G+  +G    A +L  +M   G  PDS T
Sbjct: 488 YSKCGSLEEAYQVFSTMAGRRNSATWNALIAGHAQHGFSGRAPSLVREMQLEGVEPDSLT 547

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDAS----GL 513
           Y+ +L AC HAGL  DG   F  ++E+ ++   +EHYGCVVDLL RAG L++A     GL
Sbjct: 548 YVGLLLACTHAGLLEDGCKFFAALVEDKRLAVKEEHYGCVVDLLGRAGKLAEAEEFLLGL 607

Query: 514 AGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQK 552
              +   +   +W +LLS   +H     D E  R  +++
Sbjct: 608 RRAMPVAVSAAMWTSLLSAYGVH----GDMELARRAARR 642



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 141/532 (26%), Positives = 236/532 (44%), Gaps = 40/532 (7%)

Query: 36  VVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHG 95
           V  ++ +I  Y+ +     +      M   G+ PN  T+V +L A   L ++ L   IH 
Sbjct: 1   VAMYTALIGAYARSNDPLAAFTLLRQMQADGIPPNRITLVEILSACTALHSIHLGDRIHQ 60

Query: 96  LMVKFGLESD----------------------LFEGLKNPYLVSCNAIVAGFINNKLFQQ 133
            ++  GL  D                       F  +    L++ NAI+    ++     
Sbjct: 61  WIIDLGLHRDSVLGTALLTTFARCGSLDRAKAAFTAIARKDLIAWNAIITATSHSNRSHD 120

Query: 134 AVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGL-ILDVSVNNSVL 192
           A+ LF   +  G+ PNA+T++ V+   +   S      +H L ++  +    V+V NS++
Sbjct: 121 ALDLFRRMQLDGIHPNAITLVAVL--SIFQESSTDARAVHSLAMESAMDASTVAVGNSIV 178

Query: 193 DMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTV 252
           +MY+   DLD A   F  ++ K+V+SW  M+      +     L +F  M    I  D  
Sbjct: 179 NMYARCRDLDRARLAFARIQSKNVVSWNVMISAHSQLDRL-HPLAMFHAMMLEGIKADAT 237

Query: 253 ALLNLISVNAILGDLKRGKQLH--AQVVLGG--LQSELRLSNSIIAMYSKCGDLDSSRSV 308
             +NL S  A    L+ G+ LH  A+ + GG  L  +  L+ S++ M++KCG +  +R +
Sbjct: 238 TFVNLASGLAAPSPLRDGELLHRCARELGGGRTLIYDAVLATSLVTMFAKCGSVAHAREI 297

Query: 309 FNQ---ITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGE 365
           F +     E++ V W AII+  VQN    +AL  F  M+ +   S D+IT VS + A   
Sbjct: 298 FRENFHCHERNPVVWNAIIAALVQNHDFSDALLLFRTMQLQGVPS-DAITFVSTIDACTA 356

Query: 366 LAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNT 425
           L        LHGI  E+       V   L++ YSK   +D A   F+ +    D+V+WN 
Sbjct: 357 LEDFPTGRALHGIISESSLETDTIVATALVNFYSKSRRLDAATAAFQRI-HEPDLVAWNV 415

Query: 426 IIYGYGVNGHGETALAL-YHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEE 484
           +I  +  N +  TAL + +H+M      PD  T+++ L AC  A     G  +  Q I +
Sbjct: 416 LIAAHVDNANSSTALEIFFHRMELK---PDRITFITTLAACVTASALPLGRRLHEQ-IRQ 471

Query: 485 NKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
             +         +VD+ ++ G L +A  +   +        W AL++G   H
Sbjct: 472 RGLHSDVVVASALVDMYSKCGSLEEAYQVFSTMAGRRNSATWNALIAGHAQH 523


>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  229 bits (584), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 149/444 (33%), Positives = 236/444 (53%), Gaps = 20/444 (4%)

Query: 99  KFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
           +  L  ++F  +++P +   N ++   + N    +A   F   + +GL  +  T   +++
Sbjct: 70  QMNLAVNVFNQIQDPNVHLYNTLIRAHVQNSQSLKAFATFFDMQKNGLFADNFTYPFLLK 129

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYS-C-LMDLDAAIQIFREMECKDV 216
            C   G     ++IH    K G   D+ V NS++D YS C L+ ++ A+++F EM  KD+
Sbjct: 130 ACNGKGWLPTVQMIHCHVEKYGFFGDLFVPNSLIDSYSKCGLLGVNYAMKLFMEMGEKDL 189

Query: 217 ISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAIL-GDLKRGKQLHA 275
           +SW  M+G  V     G A K+F EM          A  + +S N IL G +K G+   A
Sbjct: 190 VSWNSMIGGLVKAGDLGRARKLFDEM----------AERDAVSWNTILDGYVKAGEMSQA 239

Query: 276 QVVLGGLQSELRLS-NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
             +   +     +S +++++ Y K GD++ +R +F+++  K+LV+WT IISG+ + G A+
Sbjct: 240 FNLFEKMPERNVVSWSTMVSGYCKTGDMEMARMLFDKMPFKNLVTWTIIISGFAEKGLAK 299

Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
           EA   + +M        D  TL+SIL A  E   L +  ++H    +       +V N L
Sbjct: 300 EATTLYNQMEAAGLKPDDG-TLISILAACAESGLLVLGKKVHASIKKIRIKCSVNVSNAL 358

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           +  Y+KCG VD A  +F EM  +RD+VSWN ++ G  ++GHGE A+ L+ KM + G  PD
Sbjct: 359 VDMYAKCGRVDKALSIFNEMS-MRDLVSWNCMLQGLAMHGHGEKAIQLFSKMQQEGFKPD 417

Query: 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLA 514
             T ++IL AC HAG  + GL  FN M  ++ + P  EHYGC++DLL R G L +A  L 
Sbjct: 418 KVTLIAILCACTHAGFVDQGLSYFNSMERDHGIVPHIEHYGCMIDLLGRGGRLEEAFRLV 477

Query: 515 GKLLEGMGPN--IWRALLSGCVLH 536
             +   M PN  IW  LL  C +H
Sbjct: 478 QSM--PMEPNDVIWGTLLGACRVH 499



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 126/516 (24%), Positives = 237/516 (45%), Gaps = 43/516 (8%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y + KL+S +    ++  A N+F++I + NV  ++ +I  +  N    K+   F  M 
Sbjct: 54  DLYVAPKLISAFSLCHQMNLAVNVFNQIQDPNVHLYNTLIRAHVQNSQSLKAFATFFDMQ 113

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY------- 114
            +GL  ++FT   +L A  G   L   + IH  + K+G   DLF    L + Y       
Sbjct: 114 KNGLFADNFTYPFLLKACNGKGWLPTVQMIHCHVEKYGFFGDLFVPNSLIDSYSKCGLLG 173

Query: 115 ---------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                          LVS N+++ G +      +A  LF+         +AV+  T++ G
Sbjct: 174 VNYAMKLFMEMGEKDLVSWNSMIGGLVKAGDLGRARKLFDEMAER----DAVSWNTILDG 229

Query: 160 CVALGSRALC-ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            V  G  +    L   +  +     +V   ++++  Y    D++ A  +F +M  K++++
Sbjct: 230 YVKAGEMSQAFNLFEKMPER-----NVVSWSTMVSGYCKTGDMEMARMLFDKMPFKNLVT 284

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           WT ++  F +   A +A  ++ +M  + +  D   L+++++  A  G L  GK++HA + 
Sbjct: 285 WTIIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLISILAACAESGLLVLGKKVHASIK 344

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
              ++  + +SN+++ MY+KCG +D + S+FN+++ + LVSW  ++ G   +G   +A+ 
Sbjct: 345 KIRIKCSVNVSNALVDMYAKCGRVDKALSIFNEMSMRDLVSWNCMLQGLAMHGHGEKAIQ 404

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQ-LHGIAFEAGFPRYRSVQNCLISS 397
            F KM+QE     D +TL++IL A      ++  L   + +  + G   +     C+I  
Sbjct: 405 LFSKMQQEGFKP-DKVTLIAILCACTHAGFVDQGLSYFNSMERDHGIVPHIEHYGCMIDL 463

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTE---TGEVPD 454
             + G ++ A+ + + M    + V W T++    V+     A+ L  K+ +   T E  D
Sbjct: 464 LGRGGRLEEAFRLVQSMPMEPNDVIWGTLLGACRVH----NAVPLAEKVLDRLITLEQSD 519

Query: 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPS 490
              Y  + N    AG  N    +  QM      KPS
Sbjct: 520 PGNYSMLSNIFAAAGDWNSVANMRLQMKSTGVQKPS 555



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 113/423 (26%), Positives = 200/423 (47%), Gaps = 37/423 (8%)

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           +H   IK  L  D+ V   ++  +S    ++ A+ +F +++  +V  +  ++   V    
Sbjct: 42  VHAQIIKRNLHNDLYVAPKLISAFSLCHQMNLAVNVFNQIQDPNVHLYNTLIRAHVQNSQ 101

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
           +  A   F +M+K+ +  D      L+      G L   + +H  V   G   +L + NS
Sbjct: 102 SLKAFATFFDMQKNGLFADNFTYPFLLKACNGKGWLPTVQMIHCHVEKYGFFGDLFVPNS 161

Query: 292 IIAMYSKCGDL--DSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD 349
           +I  YSKCG L  + +  +F ++ EK LVSW ++I G V+ G    A   F +M +   D
Sbjct: 162 LIDSYSKCGLLGVNYAMKLFMEMGEKDLVSWNSMIGGLVKAGDLGRARKLFDEMAER--D 219

Query: 350 SVDSITLVSILTASGELA-ALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
           +V   T++     +GE++ A  +        FE    R     + ++S Y K G++++A 
Sbjct: 220 AVSWNTILDGYVKAGEMSQAFNL--------FEKMPERNVVSWSTMVSGYCKTGDMEMAR 271

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
           ++F++M F +++V+W  II G+   G  + A  LY++M   G  PD  T +SIL AC  +
Sbjct: 272 MLFDKMPF-KNLVTWTIIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLISILAACAES 330

Query: 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI-WR 527
           GL   G  + +  I++ ++K S      +VD+ A+ G +  A  +  ++   M   + W 
Sbjct: 331 GLLVLGKKV-HASIKKIRIKCSVNVSNALVDMYAKCGRVDKALSIFNEM--SMRDLVSWN 387

Query: 528 ALLSGCVLHVGRFQDAEALRSGSQKKG-------IIKI-----------PGISFLNSTSR 569
            +L G  +H G  + A  L S  Q++G       +I I            G+S+ NS  R
Sbjct: 388 CMLQGLAMH-GHGEKAIQLFSKMQQEGFKPDKVTLIAILCACTHAGFVDQGLSYFNSMER 446

Query: 570 DFG 572
           D G
Sbjct: 447 DHG 449



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 113/224 (50%), Gaps = 8/224 (3%)

Query: 266 DLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIIS 325
           D    K++HAQ++   L ++L ++  +I+ +S C  ++ + +VFNQI + ++  +  +I 
Sbjct: 35  DFNHIKEVHAQIIKRNLHNDLYVAPKLISAFSLCHQMNLAVNVFNQIQDPNVHLYNTLIR 94

Query: 326 GYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFP 385
            +VQN  + +A   F  M Q+     D+ T   +L A      L     +H    + GF 
Sbjct: 95  AHVQNSQSLKAFATFFDM-QKNGLFADNFTYPFLLKACNGKGWLPTVQMIHCHVEKYGFF 153

Query: 386 RYRSVQNCLISSYSKCG--NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALY 443
               V N LI SYSKCG   V+ A  +F EMG  +D+VSWN++I G    G    A  L+
Sbjct: 154 GDLFVPNSLIDSYSKCGLLGVNYAMKLFMEMG-EKDLVSWNSMIGGLVKAGDLGRARKLF 212

Query: 444 HKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKV 487
            +M E     D+ ++ +IL+    AG  +    +F +M E N V
Sbjct: 213 DEMAER----DAVSWNTILDGYVKAGEMSQAFNLFEKMPERNVV 252


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  229 bits (584), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 168/618 (27%), Positives = 293/618 (47%), Gaps = 96/618 (15%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           ++ +S Y + G+ + A ++F+ +  ++ V+++ +I GY  N   + + K F  M    L+
Sbjct: 64  NRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKMPDRDLI 123

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINN 128
             +  + G +       NL  AR+             LF  +    +VS NA+++GF  N
Sbjct: 124 SWNVMLSGYVKNG----NLSAARA-------------LFNQMPEKDVVSWNAMLSGFAQN 166

Query: 129 KLFQQAVLLFNFFRGSGLVPNAVTM-----LTVIRGCVALGSRALCELIHGLTIKLGLIL 183
              ++A  +F+      LV N ++        V  G +    R     +    +    ++
Sbjct: 167 GFVEEARKIFDQM----LVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLM 222

Query: 184 DVSVNNSVLDMYSCLMD----------------------LDAAIQIFREMECKDVISWTR 221
              V    LD    L D                      L  A ++F E+  +DV +WT 
Sbjct: 223 GGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTA 282

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH-AQVVLG 280
           M+  FV      +A +IF EM +           N +S NA++    + +Q+  A+ +  
Sbjct: 283 MVSGFVQNGMLDEATRIFEEMPEK----------NEVSWNAMIAGYVQSQQIEKARELFD 332

Query: 281 GLQSELRLS-NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            + S    S N+++  Y++CG++D ++ +F+++ ++  +SW A+ISGY Q+G + EAL+ 
Sbjct: 333 QMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHL 392

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           FIKM+++    ++   L   L++  E+AALE+  QLHG   +AGF       N L++ Y 
Sbjct: 393 FIKMKRD-GGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYG 451

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           KCG+++ A+ VFE++   +D+VSWNT+I GY  +G G+ ALAL+  M  T + PD  T +
Sbjct: 452 KCGSIEEAFDVFEDIT-EKDIVSWNTMIAGYARHGFGKEALALFESMKMTIK-PDDVTLV 509

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519
            +L+AC H GL + G+  FN M +   +  + +HY C++DLL RAG L +A  L   +  
Sbjct: 510 GVLSACSHTGLVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPF 569

Query: 520 GMGPNIWRALLSGCVLH---------------------------------VGRFQDAEAL 546
                 W ALL    +H                                  GR+++   +
Sbjct: 570 YPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREM 629

Query: 547 RSGSQKKGIIKIPGISFL 564
           RS  + KG+ K+PG S++
Sbjct: 630 RSKMRDKGVKKVPGYSWV 647



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 136/520 (26%), Positives = 236/520 (45%), Gaps = 67/520 (12%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  D  + + +LS Y K+G +  A  LF+++PEK+VVSW+ ++ G++ NGF E++ K F 
Sbjct: 118 PDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFD 177

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIH----------------GLMVKFGLES 104
            M    L+ N  +  G+L A      +E AR +                 G + K  L+ 
Sbjct: 178 QM----LVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDD 233

Query: 105 --DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLF------NFFRGSGLVPNAVTMLTV 156
              LF+ +     +S N ++ G+  N L  +A  LF      + F  + +V   V     
Sbjct: 234 ARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQ---- 289

Query: 157 IRGCVALGSRALCELIHGLTIKLGLIL----------------------DVSVNNSVLDM 194
             G +   +R   E+     +    ++                      + S  N+++  
Sbjct: 290 -NGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTG 348

Query: 195 YSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVAL 254
           Y+   ++D A  +F EM  +D ISW  M+  +     + +AL +F +M++   I +  AL
Sbjct: 349 YAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSAL 408

Query: 255 LNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE 314
              +S  A +  L+ GKQLH ++V  G Q+     N+++AMY KCG ++ +  VF  ITE
Sbjct: 409 ACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITE 468

Query: 315 KSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQ 374
           K +VSW  +I+GY ++G  +EAL  F  M+   T   D +TLV +L+A      ++  ++
Sbjct: 469 KDIVSWNTMIAGYARHGFGKEALALFESMKM--TIKPDDVTLVGVLSACSHTGLVDKGME 526

Query: 375 LHGIAFEAGFPRYRSVQN-----CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYG 429
                F + +  Y    N     C+I    + G +D A  + + M F  D  +W  ++  
Sbjct: 527 Y----FNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGA 582

Query: 430 YGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAG 469
             ++G  E       K+ E  E  +S  Y+ + N    +G
Sbjct: 583 SRIHGDTELGEKAAEKVFEM-EPDNSGMYVLLSNLYAASG 621



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 136/275 (49%), Gaps = 26/275 (9%)

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAIL-GDLKRGKQL 273
           D++ W R +  ++       AL +F  MR+           + ++ NA++ G L   K  
Sbjct: 59  DIVKWNRKISAYMRKGQCESALSVFNGMRRR----------STVTYNAMISGYLSNNKFD 108

Query: 274 HAQVVLGGLQSELRLS-NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC 332
            A+ V   +     +S N +++ Y K G+L ++R++FNQ+ EK +VSW A++SG+ QNG 
Sbjct: 109 CARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGF 168

Query: 333 AREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN 392
             EA   F +M  +     + I+   +L+A  +   +E   +L    F++         N
Sbjct: 169 VEEARKIFDQMLVK-----NEISWNGLLSAYVQNGRIEDARRL----FDSKMDWEIVSWN 219

Query: 393 CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV 452
           CL+  Y +   +D A  +F+ M  +RD +SWN +I GY  NG    A  L+ ++     +
Sbjct: 220 CLMGGYVRKKRLDDARSLFDRMP-VRDKISWNIMITGYAQNGLLSEARRLFEELP----I 274

Query: 453 PDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKV 487
            D   + ++++     G+ ++   IF +M E+N+V
Sbjct: 275 RDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEV 309



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 100/239 (41%), Gaps = 56/239 (23%)

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNG---CAREALN 338
           + S++   N  I+ Y + G  +S+ SVFN +  +S V++ A+ISGY+ N    CAR+   
Sbjct: 56  VDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVF- 114

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
                  EK    D I+                                    N ++S Y
Sbjct: 115 -------EKMPDRDLISW-----------------------------------NVMLSGY 132

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
            K GN+  A  +F +M   +DVVSWN ++ G+  NG  E A  ++ +M    E+    ++
Sbjct: 133 VKNGNLSAARALFNQMP-EKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNEI----SW 187

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL 517
             +L+A    G   D   +F+  ++   V      + C++    R   L DA  L  ++
Sbjct: 188 NGLLSAYVQNGRIEDARRLFDSKMDWEIVS-----WNCLMGGYVRKKRLDDARSLFDRM 241


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  229 bits (584), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 143/500 (28%), Positives = 253/500 (50%), Gaps = 50/500 (10%)

Query: 115 LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHG 174
           + S N+++A    +    +A+  F+  R   L PN  T    I+ C AL         H 
Sbjct: 117 VFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAHQ 176

Query: 175 LTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGD 234
             +  G   D+ V+++++DMYS   +L  A  +F E+  ++++SWT M+  +V  + A  
Sbjct: 177 QALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHR 236

Query: 235 ALKIFREMR--------KSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
           AL +F+E             +  D +A+++++S  + + +    + +H  ++  G + +L
Sbjct: 237 ALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKRGFEGDL 296

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            + N+++  Y+KCG+L  SR VF+ + E+ ++SW +II+ Y QNG + E++  F +M ++
Sbjct: 297 GVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKD 356

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
              + +++TL ++L A     +  +   +H    + G      V   +I  Y KCG V++
Sbjct: 357 GEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEM 416

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           A   F+ M   ++V SW+ ++ GYG++GH + AL ++++M   G  P+  T++S+L AC 
Sbjct: 417 ARKAFDRMR-EKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACS 475

Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMG--PN 524
           HAGL  +G   F  M  E  V+P  EHYGC+VDLL RAG L +A      L++GM   P+
Sbjct: 476 HAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAF----DLIKGMKLRPD 531

Query: 525 --IWRALLSGCVLH---------------------------------VGRFQDAEALRSG 549
             +W ALL  C +H                                  GR++D E +R  
Sbjct: 532 FVVWGALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRIL 591

Query: 550 SQKKGIIKIPGISFLNSTSR 569
            +  G++K PG S ++   R
Sbjct: 592 MKNSGLVKPPGFSLVDIKGR 611



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 122/439 (27%), Positives = 212/439 (48%), Gaps = 42/439 (9%)

Query: 26  NLFDEIPEK-NVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGL 84
            LF++  +K NV SW+ VI   + +G   ++++AFS M    L PN  T    + + + L
Sbjct: 106 TLFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSAL 165

Query: 85  QNLELARSIHGLMVKFGLESD----------------------LFEGLKNPYLVSCNAIV 122
            +L   R  H   + FG E D                      LF+ + +  +VS  +++
Sbjct: 166 LDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMI 225

Query: 123 AGFINNKLFQQAVLLFNFF-------RGSGLV-PNAVTMLTVIRGCVALGSRALCELIHG 174
            G++ N    +A+LLF  F        G G V  + + M++V+  C  +  +++ E +HG
Sbjct: 226 TGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHG 285

Query: 175 LTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGD 234
             IK G   D+ V N+++D Y+   +L  + ++F  M  +DVISW  ++ ++     + +
Sbjct: 286 FLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTE 345

Query: 235 ALKIFREMRKS-RIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSII 293
           +++IF  M K   I  + V L  ++   A  G  + GK +H QV+  GL+S + +  SII
Sbjct: 346 SMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSII 405

Query: 294 AMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDS 353
            MY KCG ++ +R  F+++ EK++ SW+A+++GY  +G A+EAL  F +M        + 
Sbjct: 406 DMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKP-NY 464

Query: 354 ITLVSILTASGELAALEICLQL-----HGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
           IT VS+L A      LE          H    E G   Y     C++    + G +  A+
Sbjct: 465 ITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHY----GCMVDLLGRAGYLKEAF 520

Query: 409 IVFEEMGFLRDVVSWNTII 427
            + + M    D V W  ++
Sbjct: 521 DLIKGMKLRPDFVVWGALL 539



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 150/298 (50%), Gaps = 31/298 (10%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + SS L+  Y K G++++A  LFDEI  +N+VSW+ +I GY  N    +++  F   +
Sbjct: 186 DLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALLLFKEFL 245

Query: 64  L--SG------LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL--------- 106
           +  SG      +  +   MV VL A + +    +   +HG ++K G E DL         
Sbjct: 246 VEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKRGFEGDLGVENTLMDA 305

Query: 107 -------------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVP-NAVT 152
                        F+G+    ++S N+I+A +  N +  +++ +F+     G +  NAVT
Sbjct: 306 YAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVT 365

Query: 153 MLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME 212
           +  V+  C   GS+ L + IH   IK+GL  +V V  S++DMY     ++ A + F  M 
Sbjct: 366 LSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMR 425

Query: 213 CKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG 270
            K+V SW+ M+  +    +A +AL++F EM  + +  + +  +++++  +  G L+ G
Sbjct: 426 EKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEG 483


>gi|297811443|ref|XP_002873605.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319442|gb|EFH49864.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 750

 Score =  229 bits (584), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 158/523 (30%), Positives = 255/523 (48%), Gaps = 16/523 (3%)

Query: 17  KSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVG 76
           K GK+ EA   F E+ +  V   S+ ++ Y       + +++ SH     LL N   M G
Sbjct: 58  KHGKLNEAFEFFQEMDKAGV---SVSLYSYQCLFEACRELRSLSH---GRLLHNRMRM-G 110

Query: 77  VLVAAAGLQNLELARSIHGLMVKFGLESD---LFEGLKNPYLVSCNAIVAGFINNKLFQQ 133
           +   +  LQN  L      +  + G   D   LF+ + +   VS   +++ +    L  +
Sbjct: 111 IENPSVLLQNCVLQ-----MYCECGSLEDADKLFDEMSDLNAVSRTTMISAYAEQGLLDK 165

Query: 134 AVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLD 193
           AV LF+    SG  P +    T+++  V   +  +   IH   I+ GL  + S+   +++
Sbjct: 166 AVGLFSRMLESGDKPPSSMYTTLLKSLVNPRALDIGRQIHAHVIRAGLCSNASIETGIVN 225

Query: 194 MYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVA 253
           MY     L  A ++F +M  K  ++WT +M  +     A DALK+F ++    +  D+  
Sbjct: 226 MYVKCGWLVGAKRVFDQMAVKKPVAWTGLMVGYTQAGRARDALKLFVDLITEGVEWDSFV 285

Query: 254 LLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT 313
              ++   A L +L+ GKQ+HA V   GL+ E+ +   ++  Y KC   +S+   F +I 
Sbjct: 286 FSVVLKACASLEELRFGKQIHACVAKLGLECEVSVGTPLVDFYIKCSSFESACRAFQEIR 345

Query: 314 EKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICL 373
           E + VSW+AIISGY Q     EA+  F  +R +    ++S T  SI  A   LA   I  
Sbjct: 346 EPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNAVVLNSFTYTSIFQACSVLADCNIGG 405

Query: 374 QLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVN 433
           Q+H  A +      +  ++ LI+ YSKCG +D A+ VFE M    D+V+W   I G+   
Sbjct: 406 QVHADAIKRSLIGSQYGESALITMYSKCGCLDDAHEVFESMDN-PDIVAWTAFISGHAYY 464

Query: 434 GHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEH 493
           G+   AL L+ KM   G  P+S T++++L AC HAGL   G    + M+ +  V P+ +H
Sbjct: 465 GNASEALRLFEKMVSCGMKPNSVTFIAVLTACSHAGLVEQGKHYLDTMLRKYNVAPTIDH 524

Query: 494 YGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
           Y C++D+ AR+G L +A      +        W+  LSGC  H
Sbjct: 525 YDCMIDIYARSGLLDEALRFMKNMPFEPDAMSWKCFLSGCWTH 567



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/350 (24%), Positives = 167/350 (47%), Gaps = 25/350 (7%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C +    + +++ Y K G +  A+ +FD++  K  V+W+ ++ GY+  G    ++K F  
Sbjct: 214 CSNASIETGIVNMYVKCGWLVGAKRVFDQMAVKKPVAWTGLMVGYTQAGRARDALKLFVD 273

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL--------------- 106
           ++  G+  +SF    VL A A L+ L   + IH  + K GLE ++               
Sbjct: 274 LITEGVEWDSFVFSVVLKACASLEELRFGKQIHACVAKLGLECEVSVGTPLVDFYIKCSS 333

Query: 107 -------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRG-SGLVPNAVTMLTVIR 158
                  F+ ++ P  VS +AI++G+     F++AV  F   R  + +V N+ T  ++ +
Sbjct: 334 FESACRAFQEIREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNAVVLNSFTYTSIFQ 393

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            C  L    +   +H   IK  LI      ++++ MYS    LD A ++F  M+  D+++
Sbjct: 394 ACSVLADCNIGGQVHADAIKRSLIGSQYGESALITMYSKCGCLDDAHEVFESMDNPDIVA 453

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQ-LHAQV 277
           WT  +     +  A +AL++F +M    +  ++V  + +++  +  G +++GK  L   +
Sbjct: 454 WTAFISGHAYYGNASEALRLFEKMVSCGMKPNSVTFIAVLTACSHAGLVEQGKHYLDTML 513

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSS-RSVFNQITEKSLVSWTAIISG 326
               +   +   + +I +Y++ G LD + R + N   E   +SW   +SG
Sbjct: 514 RKYNVAPTIDHYDCMIDIYARSGLLDEALRFMKNMPFEPDAMSWKCFLSG 563


>gi|255541594|ref|XP_002511861.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549041|gb|EEF50530.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 751

 Score =  229 bits (584), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 144/493 (29%), Positives = 244/493 (49%), Gaps = 23/493 (4%)

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------- 105
           M+L+   PN  T+V V+         +L  + HG ++K G E +                
Sbjct: 1   MLLTDQRPNFVTLVSVIRGLGAFHCQDLISAAHGFVIKLGFELEVPVRTALIRFYTLFDF 60

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                LF+   +  +V  +A+V+  + N  +++ V  F      G   N VT+++++  C
Sbjct: 61  EISLKLFDQKLHNDVVLWSAMVSACVKNAKYREGVQHFRRMLNYGTEANHVTVISILSAC 120

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             LG     + IHG  +K        V NS++D Y+    ++A+  IF  +  KD+ISW 
Sbjct: 121 GHLGGLCFVKEIHGFCLKKVFYSFTVVQNSLMDAYAKCGKIEASFYIFNRICEKDLISWR 180

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++ + V+ E   +AL IF +M++S    D + + + I  +    +LK G   HA +   
Sbjct: 181 TVIRICVENECPREALDIFLKMQRSTTEADEIIIRDTIMASIQAKELKFGLGFHAYIEKN 240

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           G    + +  +++ MY K     S+  VF+Q+  K L++W+A+IS Y + G   +ALN +
Sbjct: 241 GFSGYVSVGTALLQMYGKFSKFSSAWLVFDQLNYKDLIAWSAMISVYARGGKPYDALNIY 300

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            +M Q   +  + +T VS+L A   L A E+   +HG   +AG      + + LI  Y K
Sbjct: 301 RQM-QSTNEKANEVTFVSLLQACSALGAQELGESIHGFITKAGHSSNAFLNSALIDLYCK 359

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
            G+V     VF+E+   +D++ W+++I GY +NG G  AL  +  M   G  P+ + +LS
Sbjct: 360 FGSVKKGKAVFDEIS-TKDLICWSSMINGYALNGCGSEALETFADMLNWGFKPNETVFLS 418

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           IL+ C   GL ++G   F  M E+ ++ P   HY C+VDLL+R G + +A     K+   
Sbjct: 419 ILSVCSQCGLEHEGRKWFYYMQEKYRLAPKLSHYACMVDLLSRHGHIEEALMFVKKMPVV 478

Query: 521 MGPNIWRALLSGC 533
               IW A+L+GC
Sbjct: 479 PDKRIWGAVLAGC 491



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 112/479 (23%), Positives = 209/479 (43%), Gaps = 39/479 (8%)

Query: 26  NLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQ 85
            LFD+    +VV WS ++     N  + + ++ F  M+  G   N  T++ +L A   L 
Sbjct: 65  KLFDQKLHNDVVLWSAMVSACVKNAKYREGVQHFRRMLNYGTEANHVTVISILSACGHLG 124

Query: 86  NLELARSIHGLMVKFGLESDLFEGLKNPYL---VSCNAIVAGF----------------- 125
            L   + IHG  +K    S  F  ++N  +     C  I A F                 
Sbjct: 125 GLCFVKEIHGFCLKKVFYS--FTVVQNSLMDAYAKCGKIEASFYIFNRICEKDLISWRTV 182

Query: 126 ----INNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGL 181
               + N+  ++A+ +F   + S    + + +   I   +           H    K G 
Sbjct: 183 IRICVENECPREALDIFLKMQRSTTEADEIIIRDTIMASIQAKELKFGLGFHAYIEKNGF 242

Query: 182 ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFRE 241
              VSV  ++L MY       +A  +F ++  KD+I+W+ M+ ++       DAL I+R+
Sbjct: 243 SGYVSVGTALLQMYGKFSKFSSAWLVFDQLNYKDLIAWSAMISVYARGGKPYDALNIYRQ 302

Query: 242 MRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGD 301
           M+ +    + V  ++L+   + LG  + G+ +H  +   G  S   L++++I +Y K G 
Sbjct: 303 MQSTNEKANEVTFVSLLQACSALGAQELGESIHGFITKAGHSSNAFLNSALIDLYCKFGS 362

Query: 302 LDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILT 361
           +   ++VF++I+ K L+ W+++I+GY  NGC  EAL  F  M        +++ L SIL+
Sbjct: 363 VKKGKAVFDEISTKDLICWSSMINGYALNGCGSEALETFADMLNWGFKPNETVFL-SILS 421

Query: 362 ASGELAALEICLQLHGIA-FEAGFPRYR-----SVQNCLISSYSKCGNVDLAYIVFEEMG 415
              +       L+  G   F     +YR     S   C++   S+ G+++ A +  ++M 
Sbjct: 422 VCSQCG-----LEHEGRKWFYYMQEKYRLAPKLSHYACMVDLLSRHGHIEEALMFVKKMP 476

Query: 416 FLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD-SSTYLSILNACGHAGLTND 473
            + D   W  ++ G    G G   +A +     +   P+ +S Y+++L+     G   D
Sbjct: 477 VVPDKRIWGAVLAGCRSRGDGSIEVAEFVVRQLSALDPENTSYYVTLLDLYAEQGRWKD 535



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 81/404 (20%), Positives = 171/404 (42%), Gaps = 38/404 (9%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+  Y K GKI+ +  +F+ I EK+++SW  VI     N    +++  F  M  S    +
Sbjct: 151 LMDAYAKCGKIEASFYIFNRICEKDLISWRTVIRICVENECPREALDIFLKMQRSTTEAD 210

Query: 71  SFTMVGVLVAAAGLQNLELARSIH----------------------GLMVKFGLESDLFE 108
              +   ++A+   + L+     H                      G   KF     +F+
Sbjct: 211 EIIIRDTIMASIQAKELKFGLGFHAYIEKNGFSGYVSVGTALLQMYGKFSKFSSAWLVFD 270

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            L    L++ +A+++ +        A+ ++   + +    N VT +++++ C ALG++ L
Sbjct: 271 QLNYKDLIAWSAMISVYARGGKPYDALNIYRQMQSTNEKANEVTFVSLLQACSALGAQEL 330

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
            E IHG   K G   +  +N++++D+Y     +     +F E+  KD+I W+ M+  +  
Sbjct: 331 GESIHGFITKAGHSSNAFLNSALIDLYCKFGSVKKGKAVFDEISTKDLICWSSMINGYAL 390

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
                +AL+ F +M       +    L+++SV +  G    G++         +Q + RL
Sbjct: 391 NGCGSEALETFADMLNWGFKPNETVFLSILSVCSQCGLEHEGRKWFYY-----MQEKYRL 445

Query: 289 SNSI------IAMYSKCGDLDSSRSVFNQ---ITEKSLVSWTAIISGYVQNGCAREALNQ 339
           +  +      + + S+ G ++ +     +   + +K +  W A+++G    G     + +
Sbjct: 446 APKLSHYACMVDLLSRHGHIEEALMFVKKMPVVPDKRI--WGAVLAGCRSRGDGSIEVAE 503

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG 383
           F+  +    D  ++   V++L    E    +   +L  I  E G
Sbjct: 504 FVVRQLSALDPENTSYYVTLLDLYAEQGRWKDVERLTKIVDEKG 547



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 81/163 (49%), Gaps = 15/163 (9%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           + + +S L+  Y K G +K+ + +FDEI  K+++ WS +I+GY++NG   ++++ F+ M+
Sbjct: 346 NAFLNSALIDLYCKFGSVKKGKAVFDEISTKDLICWSSMINGYALNGCGSEALETFADML 405

Query: 64  LSGLLPNSFTMVGVL--VAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAI 121
             G  PN    + +L   +  GL++ E  +  + +  K+ L          P L     +
Sbjct: 406 NWGFKPNETVFLSILSVCSQCGLEH-EGRKWFYYMQEKYRLA---------PKLSHYACM 455

Query: 122 VAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
           V     +   ++A++   F +   +VP+      V+ GC + G
Sbjct: 456 VDLLSRHGHIEEALM---FVKKMPVVPDKRIWGAVLAGCRSRG 495


>gi|302816264|ref|XP_002989811.1| hypothetical protein SELMODRAFT_130525 [Selaginella moellendorffii]
 gi|300142377|gb|EFJ09078.1| hypothetical protein SELMODRAFT_130525 [Selaginella moellendorffii]
          Length = 756

 Score =  229 bits (584), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 168/582 (28%), Positives = 282/582 (48%), Gaps = 70/582 (12%)

Query: 5   PYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML 64
           P  ++ +++ Y K   ++EA  +F+ +  KN +SWS ++  Y+ N    ++MK F HM L
Sbjct: 163 PTVANCVVNMYGKCDDLEEARRVFESLKRKNEISWSSLVAAYAQNNQATEAMKLFQHMDL 222

Query: 65  SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------- 105
            GL P+  T++ VL A   L+  + +  IH  +++  LE D                   
Sbjct: 223 EGLKPDRVTLISVLDACGDLRASKQSSQIHARVLEADLERDVVVANALVSMYGKLGRLEQ 282

Query: 106 ---LFE--GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFR----GSGLVPNAVTMLTV 156
              +FE  G K+  +++ NA+++ + +     +A   F  FR     + + P+A T+  +
Sbjct: 283 ATVIFETMGEKSRDVIAWNAMISAYAHTGHHTRA---FGIFRIMLLEAAVTPSAATISAI 339

Query: 157 IRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYS-CLMDLDAAIQIFREMECKD 215
           +  C+ LGS      IH L   +G+    SV  S+L MYS C   + +A  +F  ME K 
Sbjct: 340 LAACLDLGSG---RRIHCLAASIGVESHPSVAISLLGMYSRCSSSITSARALFLGMERKS 396

Query: 216 VISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
           +++W  M+        A +A ++F+ M    +  D     +L+   A+  DL  G++LHA
Sbjct: 397 LVAWNTMIAACAQRGLAAEAQELFKAMD---VEPDGFTFASLL---AVCCDLDLGRRLHA 450

Query: 276 QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVF-------------------NQITEKS 316
            +    L S L +  +++ MYS+CG L  + +VF                   ++I +K 
Sbjct: 451 GIATARLASRLIVDTALVGMYSRCGSLGDAAAVFEGMEDRDTCGSLGDAKLVFDRIPDKD 510

Query: 317 LVSWTAIISGYVQNGCAREALNQFIKM--RQEKTDSVDSITLVSILTASGELAALEICLQ 374
            VSW ++IS Y  +G  ++A+  +  M  R ++   V ++   S L    E AA+     
Sbjct: 511 AVSWNSMISAYAHHGRYKDAIATYRAMDCRPDEATIVSALAAASALADLDEGAAI----- 565

Query: 375 LHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNG 434
            H  A E G     +V++ L S ++KCG++D A  +FE+    +D+VSWN ++  Y  +G
Sbjct: 566 -HARALELGIA-TPAVESTLASMHAKCGSLDAAMALFEK-NREKDLVSWNAMVAAYAQHG 622

Query: 435 HGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY 494
            G  ALAL H+M   G  P+  T   +L +C HAGL   G+     +  E+ V    EHY
Sbjct: 623 DGSEALALIHRMELEGISPNGVTLSGVLASCSHAGLLERGMFYVGWLSREHGVAVESEHY 682

Query: 495 GCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
             VV+LL R G L +A  +   +     P +W  L++ CVLH
Sbjct: 683 RFVVELLGRCGRLGEAEAVVRGMPLEPEPALWVTLVAACVLH 724



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 103/340 (30%), Positives = 164/340 (48%), Gaps = 35/340 (10%)

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           CV LG+    + IH  +++ G+  +  V N +++MY     L+ A +I   ME  +V SW
Sbjct: 5   CVRLGALEAGKRIHRHSVECGMGKNRFVENLLINMYGKCGALEEARKILDGMEDSNVFSW 64

Query: 220 TRMMGLFV-----------DFEYAGDAL---------------------KIFREMRKSRI 247
           T M+  +            D  +A   +                     ++F++M     
Sbjct: 65  TIMLAAYAQNGLDSAKRVFDLSHAKRDVVSWNSMLSTCSQNEQGIQGTWELFQQMDLEGF 124

Query: 248 ICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRS 307
             D V  + L+   A   DL+RG+Q+H   V  G+     ++N ++ MY KC DL+ +R 
Sbjct: 125 QPDRVTFVTLLDCCASFADLRRGRQVHQCAVASGMDLLPTVANCVVNMYGKCDDLEEARR 184

Query: 308 VFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELA 367
           VF  +  K+ +SW+++++ Y QN  A EA+  F  M  E     D +TL+S+L A G+L 
Sbjct: 185 VFESLKRKNEISWSSLVAAYAQNNQATEAMKLFQHMDLEGLKP-DRVTLISVLDACGDLR 243

Query: 368 ALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFL-RDVVSWNTI 426
           A +   Q+H    EA   R   V N L+S Y K G ++ A ++FE MG   RDV++WN +
Sbjct: 244 ASKQSSQIHARVLEADLERDVVVANALVSMYGKLGRLEQATVIFETMGEKSRDVIAWNAM 303

Query: 427 IYGYGVNGHGETALALYHKM-TETGEVPDSSTYLSILNAC 465
           I  Y   GH   A  ++  M  E    P ++T  +IL AC
Sbjct: 304 ISAYAHTGHHTRAFGIFRIMLLEAAVTPSAATISAILAAC 343



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 136/564 (24%), Positives = 248/564 (43%), Gaps = 100/564 (17%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L++ Y K G ++EA  + D + + NV SW+I++  Y+ NG  + + + F           
Sbjct: 36  LINMYGKCGALEEARKILDGMEDSNVFSWTIMLAAYAQNGL-DSAKRVF----------- 83

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKL 130
                                             DL    ++  +VS N++++    N+ 
Sbjct: 84  ----------------------------------DLSHAKRD--VVSWNSMLSTCSQNEQ 107

Query: 131 -FQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNN 189
             Q    LF      G  P+ VT +T++  C +         +H   +  G+ L  +V N
Sbjct: 108 GIQGTWELFQQMDLEGFQPDRVTFVTLLDCCASFADLRRGRQVHQCAVASGMDLLPTVAN 167

Query: 190 SVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIIC 249
            V++MY    DL+ A ++F  ++ K+ ISW+ ++  +     A +A+K+F+ M    +  
Sbjct: 168 CVVNMYGKCDDLEEARRVFESLKRKNEISWSSLVAAYAQNNQATEAMKLFQHMDLEGLKP 227

Query: 250 DTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVF 309
           D V L++++     L   K+  Q+HA+V+   L+ ++ ++N++++MY K G L+ +  +F
Sbjct: 228 DRVTLISVLDACGDLRASKQSSQIHARVLEADLERDVVVANALVSMYGKLGRLEQATVIF 287

Query: 310 NQITEKS--LVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELA 367
             + EKS  +++W A+IS Y   G    A   F  M  E   +  + T+ +IL A  +L 
Sbjct: 288 ETMGEKSRDVIAWNAMISAYAHTGHHTRAFGIFRIMLLEAAVTPSAATISAILAACLDLG 347

Query: 368 ALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC-GNVDLAYIVFEEMGFLR-DVVSWNT 425
           +     ++H +A   G   + SV   L+  YS+C  ++  A  +F  +G  R  +V+WNT
Sbjct: 348 SGR---RIHCLAASIGVESHPSVAISLLGMYSRCSSSITSARALF--LGMERKSLVAWNT 402

Query: 426 IIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG--------HAGLTNDGLVI 477
           +I      G    A  L+  M      PD  T+ S+L  C         HAG+    L  
Sbjct: 403 MIAACAQRGLAAEAQELFKAMDVE---PDGFTFASLLAVCCDLDLGRRLHAGIATARLA- 458

Query: 478 FNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL--------------AGKLLEGMGP 523
            +++I +            +V + +R G L DA+ +                KL+    P
Sbjct: 459 -SRLIVDTA----------LVGMYSRCGSLGDAAAVFEGMEDRDTCGSLGDAKLVFDRIP 507

Query: 524 N----IWRALLSGCVLHVGRFQDA 543
           +     W +++S    H GR++DA
Sbjct: 508 DKDAVSWNSMISA-YAHHGRYKDA 530



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 116/255 (45%), Gaps = 36/255 (14%)

Query: 264 LGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAI 323
           LG L+ GK++H   V  G+     + N +I MY KCG L+ +R + + + + ++ SWT +
Sbjct: 8   LGALEAGKRIHRHSVECGMGKNRFVENLLINMYGKCGALEEARKILDGMEDSNVFSWTIM 67

Query: 324 ISGYVQNGCAREALNQFIKMRQEKTDSV-------------------------------- 351
           ++ Y QNG   ++  +   +   K D V                                
Sbjct: 68  LAAYAQNGL--DSAKRVFDLSHAKRDVVSWNSMLSTCSQNEQGIQGTWELFQQMDLEGFQ 125

Query: 352 -DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIV 410
            D +T V++L      A L    Q+H  A  +G     +V NC+++ Y KC +++ A  V
Sbjct: 126 PDRVTFVTLLDCCASFADLRRGRQVHQCAVASGMDLLPTVANCVVNMYGKCDDLEEARRV 185

Query: 411 FEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGL 470
           FE +   ++ +SW++++  Y  N     A+ L+  M   G  PD  T +S+L+ACG    
Sbjct: 186 FESLK-RKNEISWSSLVAAYAQNNQATEAMKLFQHMDLEGLKPDRVTLISVLDACGDLRA 244

Query: 471 TNDGLVIFNQMIEEN 485
           +     I  +++E +
Sbjct: 245 SKQSSQIHARVLEAD 259


>gi|302771700|ref|XP_002969268.1| hypothetical protein SELMODRAFT_92008 [Selaginella moellendorffii]
 gi|300162744|gb|EFJ29356.1| hypothetical protein SELMODRAFT_92008 [Selaginella moellendorffii]
          Length = 849

 Score =  229 bits (584), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 159/578 (27%), Positives = 291/578 (50%), Gaps = 52/578 (8%)

Query: 6   YNSSKLLSN-----YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           + S  +++N     + K G +  A ++F  +   +V SW+ ++   + +GF  ++++ F 
Sbjct: 255 WESDTMVANASINMFSKCGCLDRARDVFHRMKRWDVKSWNAMVAALAQHGFSSEALELFR 314

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL-------------- 106
            M  S +  +  T+V  L   A  ++LE  +SIH  + + GLE+D+              
Sbjct: 315 RMP-SEVAVDKTTLVIALSTCAAPESLEDGKSIHSRVARLGLETDVVAGTALVTMYSRCG 373

Query: 107 --------FEGLKNPYLVSCNAIVAGF-INNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
                   F+G+    +VS N ++A +  +  L  +A+ +F      G+ P   T L V+
Sbjct: 374 DLGEARRVFDGILGKNVVSWNNMIAAYGRDESLHSRALEIFRLMLLDGVRPTRTTALNVV 433

Query: 158 RG--CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKD 215
               C ++G +     +HG  +  GL  D  + +++++MY     L  A ++F ++  +D
Sbjct: 434 SAVECQSVGKQ-----LHGWIVDTGLYSDSFIGSALVNMYERTGSLGDARRVFEKIIERD 488

Query: 216 VISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGD-LKRGKQLH 274
           V +W  ++G+ V      +AL+ F  M       +    L  ++++A+  D +  G++LH
Sbjct: 489 VFAWNAIVGVCVGHGQPREALEWFSRMLLEGASGNRATFL--LALSAVSPDRVCYGRRLH 546

Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
             +   GL+++  ++N++I+MY++C  L+ +R+ F+++ +KS+VSWT++I+  V  G  +
Sbjct: 547 GLIAESGLEADNNVANALISMYARCKSLEDARNTFDRLEDKSIVSWTSVIAACVDLGSCQ 606

Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
           EA++ F +M  E     D +T  ++L A   ++A      +H  A E G      V   L
Sbjct: 607 EAIDLFQRMELEP----DRVTFTTVLEACTIVSAHREGKLVHSRARELGLESNVFVATAL 662

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           I  +SK GN+  A  +FE +     +  WN ++ GY   GH ++ +  +H M + G  PD
Sbjct: 663 IHMHSKFGNLGEARRIFEAVE-APTLACWNAMLGGYAQTGHSQSVIDFFHAMQQRGVAPD 721

Query: 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLA 514
             T+L++++AC HAGL   G   F  M  +  V    E YGC++DLLARAG L +A    
Sbjct: 722 HITFLAVVSACSHAGLVEKGARTFASMGTDYGVGHGLEDYGCLIDLLARAGQLEEAY--- 778

Query: 515 GKLLEGM--GPN--IWRALLSGCVLHVGRFQDAEALRS 548
              L+GM  GP+   W+ LL+ C +     + + A RS
Sbjct: 779 -DFLQGMPCGPSDVTWKTLLAACKIQGDVRRGSAAARS 815



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 132/485 (27%), Positives = 233/485 (48%), Gaps = 40/485 (8%)

Query: 24  AENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAG 83
           A   F  +P ++V+SW+ ++  Y+ NG   ++   +  M+L G++PN+ T + VL A + 
Sbjct: 180 AARFFQRMPRRDVISWTGMVTAYARNGHIAEAFGYYLRMLLEGVVPNNITFLAVLAACSS 239

Query: 84  LQNLELARSIHGLMVKFGLES----------------------DLFEGLKNPYLVSCNAI 121
            ++ EL   ++G +V+   ES                      D+F  +K   + S NA+
Sbjct: 240 ARDAEL---VYGNVVEAEWESDTMVANASINMFSKCGCLDRARDVFHRMKRWDVKSWNAM 296

Query: 122 VAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGL 181
           VA    +    +A+ LF     S +  +  T++  +  C A  S    + IH    +LGL
Sbjct: 297 VAALAQHGFSSEALELFRRM-PSEVAVDKTTLVIALSTCAAPESLEDGKSIHSRVARLGL 355

Query: 182 ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF-VDFEYAGDALKIFR 240
             DV    +++ MYS   DL  A ++F  +  K+V+SW  M+  +  D      AL+IFR
Sbjct: 356 ETDVVAGTALVTMYSRCGDLGEARRVFDGILGKNVVSWNNMIAAYGRDESLHSRALEIFR 415

Query: 241 EMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCG 300
            M    +       LN++S    +     GKQLH  +V  GL S+  + ++++ MY + G
Sbjct: 416 LMLLDGVRPTRTTALNVVSA---VECQSVGKQLHGWIVDTGLYSDSFIGSALVNMYERTG 472

Query: 301 DLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSIL 360
            L  +R VF +I E+ + +W AI+   V +G  REAL  F +M  E      +  L+++ 
Sbjct: 473 SLGDARRVFEKIIERDVFAWNAIVGVCVGHGQPREALEWFSRMLLEGASGNRATFLLALS 532

Query: 361 TASGELAALEICL--QLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLR 418
             S +     +C   +LHG+  E+G     +V N LIS Y++C +++ A   F+ +   +
Sbjct: 533 AVSPD----RVCYGRRLHGLIAESGLEADNNVANALISMYARCKSLEDARNTFDRLED-K 587

Query: 419 DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIF 478
            +VSW ++I      G  + A+ L+ +M      PD  T+ ++L AC       +G ++ 
Sbjct: 588 SIVSWTSVIAACVDLGSCQEAIDLFQRMELE---PDRVTFTTVLEACTIVSAHREGKLVH 644

Query: 479 NQMIE 483
           ++  E
Sbjct: 645 SRARE 649



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 145/574 (25%), Positives = 271/574 (47%), Gaps = 59/574 (10%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  + ++  + K   I +A  +F+++ ++++V W+ ++  +  +   +++   F  M
Sbjct: 61  LDGFFGASVVRMFIKCRSIHDASRVFEQMLDRSMVLWTSMVTAFVDDEDVDRAWLFFFRM 120

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------- 106
            L G+LP+  T + +L A   L   EL   +H L++   LESD+                
Sbjct: 121 QLEGVLPDRVTFISILNACESLAQGEL---VHRLIIDKNLESDVVIGNALMKMLAKCYDL 177

Query: 107 ------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                 F+ +    ++S   +V  +  N    +A   +      G+VPN +T L V+  C
Sbjct: 178 DGAARFFQRMPRRDVISWTGMVTAYARNGHIAEAFGYYLRMLLEGVVPNNITFLAVLAAC 237

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
               S    EL++G  ++     D  V N+ ++M+S    LD A  +F  M+  DV SW 
Sbjct: 238 ---SSARDAELVYGNVVEAEWESDTMVANASINMFSKCGCLDRARDVFHRMKRWDVKSWN 294

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+       ++ +AL++FR M  S +  D   L+  +S  A    L+ GK +H++V   
Sbjct: 295 AMVAALAQHGFSSEALELFRRM-PSEVAVDKTTLVIALSTCAAPESLEDGKSIHSRVARL 353

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN-GCAREALNQ 339
           GL++++    +++ MYS+CGDL  +R VF+ I  K++VSW  +I+ Y ++      AL  
Sbjct: 354 GLETDVVAGTALVTMYSRCGDLGEARRVFDGILGKNVVSWNNMIAAYGRDESLHSRALEI 413

Query: 340 FIKM-----RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
           F  M     R  +T +++ ++ V   +         +  QLHG   + G      + + L
Sbjct: 414 FRLMLLDGVRPTRTTALNVVSAVECQS---------VGKQLHGWIVDTGLYSDSFIGSAL 464

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGET--ALALYHKMTETGEV 452
           ++ Y + G++  A  VFE++   RDV +WN I+ G  V GHG+   AL  + +M   G  
Sbjct: 465 VNMYERTGSLGDARRVFEKI-IERDVFAWNAIV-GVCV-GHGQPREALEWFSRMLLEGAS 521

Query: 453 PDSSTYLSILNACGHAGLTNDGLVI---FNQMIEENKVKPSQEHYGCVVDLLARAGCLSD 509
            + +T+L  L+A     ++ D +      + +I E+ ++        ++ + AR   L D
Sbjct: 522 GNRATFLLALSA-----VSPDRVCYGRRLHGLIAESGLEADNNVANALISMYARCKSLED 576

Query: 510 ASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDA 543
           A     + LE      W ++++ CV  +G  Q+A
Sbjct: 577 ARNTFDR-LEDKSIVSWTSVIAACV-DLGSCQEA 608



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 130/460 (28%), Positives = 227/460 (49%), Gaps = 31/460 (6%)

Query: 91  RSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNA 150
           RSIH         S +FE + +  +V   ++V  F++++   +A L F   +  G++P+ 
Sbjct: 77  RSIHD-------ASRVFEQMLDRSMVLWTSMVTAFVDDEDVDRAWLFFFRMQLEGVLPDR 129

Query: 151 VTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFRE 210
           VT ++++  C +L   A  EL+H L I   L  DV + N+++ M +   DLD A + F+ 
Sbjct: 130 VTFISILNACESL---AQGELVHRLIIDKNLESDVVIGNALMKMLAKCYDLDGAARFFQR 186

Query: 211 MECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG 270
           M  +DVISWT M+  +    +  +A   +  M    ++ + +  L   +V A     +  
Sbjct: 187 MPRRDVISWTGMVTAYARNGHIAEAFGYYLRMLLEGVVPNNITFL---AVLAACSSARDA 243

Query: 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
           + ++  VV    +S+  ++N+ I M+SKCG LD +R VF+++    + SW A+++   Q+
Sbjct: 244 ELVYGNVVEAEWESDTMVANASINMFSKCGCLDRARDVFHRMKRWDVKSWNAMVAALAQH 303

Query: 331 GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV 390
           G + EAL  F +M  E   +VD  TLV  L+      +LE    +H      G       
Sbjct: 304 GFSSEALELFRRMPSEV--AVDKTTLVIALSTCAAPESLEDGKSIHSRVARLGLETDVVA 361

Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGFL-RDVVSWNTIIYGYGVNGHGET-ALALYHKMTE 448
              L++ YS+CG++  A  VF+  G L ++VVSWN +I  YG +    + AL ++  M  
Sbjct: 362 GTALVTMYSRCGDLGEARRVFD--GILGKNVVSWNNMIAAYGRDESLHSRALEIFRLMLL 419

Query: 449 TGEVPDSSTYLSILNA--CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGC 506
            G  P  +T L++++A  C   G    G ++   +  ++ +  +      +V++  R G 
Sbjct: 420 DGVRPTRTTALNVVSAVECQSVGKQLHGWIVDTGLYSDSFIGSA------LVNMYERTGS 473

Query: 507 LSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEAL 546
           L DA  +  K++E      W A++  C   VG  Q  EAL
Sbjct: 474 LGDARRVFEKIIE-RDVFAWNAIVGVC---VGHGQPREAL 509



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 151/302 (50%), Gaps = 9/302 (2%)

Query: 180 GLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIF 239
           G++LD     SV+ M+     +  A ++F +M  + ++ WT M+  FVD E    A   F
Sbjct: 58  GILLDGFFGASVVRMFIKCRSIHDASRVFEQMLDRSMVLWTSMVTAFVDDEDVDRAWLFF 117

Query: 240 REMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKC 299
             M+   ++ D V  +++++       L +G+ +H  ++   L+S++ + N+++ M +KC
Sbjct: 118 FRMQLEGVLPDRVTFISILNA---CESLAQGELVHRLIIDKNLESDVVIGNALMKMLAKC 174

Query: 300 GDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSI 359
            DLD +   F ++  + ++SWT +++ Y +NG   EA   +++M  E     ++IT +++
Sbjct: 175 YDLDGAARFFQRMPRRDVISWTGMVTAYARNGHIAEAFGYYLRMLLEGV-VPNNITFLAV 233

Query: 360 LTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRD 419
           L A       E+   ++G   EA +     V N  I+ +SKCG +D A  VF  M    D
Sbjct: 234 LAACSSARDAEL---VYGNVVEAEWESDTMVANASINMFSKCGCLDRARDVFHRMKRW-D 289

Query: 420 VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFN 479
           V SWN ++     +G    AL L+ +M     V D +T +  L+ C       DG  I +
Sbjct: 290 VKSWNAMVAALAQHGFSSEALELFRRMPSEVAV-DKTTLVIALSTCAAPESLEDGKSIHS 348

Query: 480 QM 481
           ++
Sbjct: 349 RV 350



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 82/359 (22%), Positives = 168/359 (46%), Gaps = 33/359 (9%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  S L++ Y ++G + +A  +F++I E++V +W+ ++     +G   ++++ FS M+
Sbjct: 457 DSFIGSALVNMYERTGSLGDARRVFEKIIERDVFAWNAIVGVCVGHGQPREALEWFSRML 516

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
           L G   N  T + + ++A     +   R +HGL+ + GLE+D                  
Sbjct: 517 LEGASGNRATFL-LALSAVSPDRVCYGRRLHGLIAESGLEADNNVANALISMYARCKSLE 575

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                F+ L++  +VS  +++A  ++    Q+A+ LF       L P+ VT  TV+  C 
Sbjct: 576 DARNTFDRLEDKSIVSWTSVIAACVDLGSCQEAIDLFQRME---LEPDRVTFTTVLEACT 632

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            + +    +L+H    +LGL  +V V  +++ M+S   +L  A +IF  +E   +  W  
Sbjct: 633 IVSAHREGKLVHSRARELGLESNVFVATALIHMHSKFGNLGEARRIFEAVEAPTLACWNA 692

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG- 280
           M+G +    ++   +  F  M++  +  D +  L ++S  +  G +++G +  A +    
Sbjct: 693 MLGGYAQTGHSQSVIDFFHAMQQRGVAPDHITFLAVVSACSHAGLVEKGARTFASMGTDY 752

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAI-----ISGYVQNGCA 333
           G+   L     +I + ++ G L+ +      +    S V+W  +     I G V+ G A
Sbjct: 753 GVGHGLEDYGCLIDLLARAGQLEEAYDFLQGMPCGPSDVTWKTLLAACKIQGDVRRGSA 811



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 136/287 (47%), Gaps = 10/287 (3%)

Query: 250 DTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVF 309
           D    L L+++ A    L     +++ +   G+  +     S++ M+ KC  +  +  VF
Sbjct: 27  DHSKFLKLVNLCAERKLLHEATSVYSSIQAQGILLDGFFGASVVRMFIKCRSIHDASRVF 86

Query: 310 NQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAAL 369
            Q+ ++S+V WT++++ +V +     A   F +M+ E     D +T +SIL A   LA  
Sbjct: 87  EQMLDRSMVLWTSMVTAFVDDEDVDRAWLFFFRMQLEGVLP-DRVTFISILNACESLAQG 145

Query: 370 EICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYG 429
           E+   +H +  +        + N L+   +KC ++D A   F+ M   RDV+SW  ++  
Sbjct: 146 EL---VHRLIIDKNLESDVVIGNALMKMLAKCYDLDGAARFFQRMP-RRDVISWTGMVTA 201

Query: 430 YGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKP 489
           Y  NGH   A   Y +M   G VP++ T+L++L AC  A    D  +++  ++E  + + 
Sbjct: 202 YARNGHIAEAFGYYLRMLLEGVVPNNITFLAVLAACSSA---RDAELVYGNVVEA-EWES 257

Query: 490 SQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
                   +++ ++ GCL  A  +  + ++      W A+++    H
Sbjct: 258 DTMVANASINMFSKCGCLDRARDVFHR-MKRWDVKSWNAMVAALAQH 303


>gi|359481906|ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Vitis vinifera]
          Length = 635

 Score =  229 bits (584), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 164/595 (27%), Positives = 276/595 (46%), Gaps = 101/595 (16%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           +++N  K G+I EA  LFDE+ E +V++W+ VI GY   G  E++ + F  +     +  
Sbjct: 58  MITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVDAKKNVVT 117

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKL 130
              MVG  + +  + + E                 LF  + N  +VS N ++ G+  N  
Sbjct: 118 WTAMVGGYIRSNKISDAE----------------KLFNEMPNKNVVSWNTMIDGYAQNGR 161

Query: 131 FQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNS 190
              A+ LF        +P         R  V+                          N+
Sbjct: 162 IDSAMYLFE------KMPE--------RNVVSW-------------------------NT 182

Query: 191 VLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICD 250
           V+ M +    ++ A ++F  M  +DVISWT M+            L     + ++R++ D
Sbjct: 183 VMSMLAQCGRIEEARRLFDRMPERDVISWTAMIA----------GLSKNGRIDEARLLFD 232

Query: 251 TVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLS--NSIIAMYSKCGDLDSSRSV 308
            +   N++S NA++    +  +L   + L     E  L   N++I    + GDL  +R +
Sbjct: 233 RMPERNVVSWNAMITGYAQNLRLDEALDLFERMPERDLPSWNTMITGLIQNGDLRRARKL 292

Query: 309 FNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAA 368
           FN++ +K+++SWT +I+G VQ G + EAL  F +M        +  T VS+L A   LA 
Sbjct: 293 FNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAG 352

Query: 369 LEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEE-MGFLRDVVSWNTII 427
           L    Q+H I  +  +     V + LI+ YSKCG +  A  +F++ M   RD+VSWN II
Sbjct: 353 LGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGII 412

Query: 428 YGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKV 487
             Y  +G+G+ A+  + +M ++G  PD  TY+ +L+AC HAGL  +GL  F++++++  +
Sbjct: 413 AAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSHAGLVEEGLKYFDELVKDRSI 472

Query: 488 KPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH----------- 536
              ++HY C+VDL  RAG L +A G   +L       +W ALL+GC +H           
Sbjct: 473 LVREDHYACLVDLCGRAGRLKEAFGFIERLETKPSARVWGALLAGCNVHANVKIGKQAAK 532

Query: 537 ----------------------VGRFQDAEALRSGSQKKGIIKIPGISFLNSTSR 569
                                  G++++A  +R   + KG+ K PG S++   +R
Sbjct: 533 KLLEVEPENAGTYLLLSNIYASTGKWREAARVRLKMKDKGLKKQPGCSWIEVGNR 587



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 92/396 (23%), Positives = 183/396 (46%), Gaps = 34/396 (8%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  D  + + +++   K+G+I EA  LFD +PE+NVVSW+ +I GY+ N   ++++  F 
Sbjct: 204 PERDVISWTAMIAGLSKNGRIDEARLLFDRMPERNVVSWNAMITGYAQNLRLDEALDLFE 263

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNA 120
            M     LP+  TM+  L+     QN +L R+             LF  +    ++S   
Sbjct: 264 RMPERD-LPSWNTMITGLI-----QNGDLRRA-----------RKLFNEMPKKNVISWTT 306

Query: 121 IVAGFINNKLFQQAVLLFN-FFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKL 179
           ++ G +     ++A+ +F+     +G  PN  T ++V+  C  L      + +H +  K 
Sbjct: 307 MITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKT 366

Query: 180 GLILDVSVNNSVLDMYSCLMDLDAAIQIFRE--MECKDVISWTRMMGLFVDFEYAGDALK 237
                  V +++++MYS   +L  A ++F +     +D++SW  ++  +    Y  +A+ 
Sbjct: 367 VYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAIN 426

Query: 238 IFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYS 297
            F+EMRKS    D V  + L+S  +  G ++ G +   ++V    +S L   +    +  
Sbjct: 427 FFKEMRKSGFKPDDVTYVGLLSACSHAGLVEEGLKYFDELVKD--RSILVREDHYACLVD 484

Query: 298 KCGDLDSSRSVFNQI----TEKSLVSWTAIISG---YVQNGCAREALNQFIKMRQEKTDS 350
            CG     +  F  I    T+ S   W A+++G   +      ++A  + +++  E   +
Sbjct: 485 LCGRAGRLKEAFGFIERLETKPSARVWGALLAGCNVHANVKIGKQAAKKLLEVEPENAGT 544

Query: 351 VDSITLVSILTASG---ELAALEICLQLHGIAFEAG 383
              + L +I  ++G   E A + + ++  G+  + G
Sbjct: 545 Y--LLLSNIYASTGKWREAARVRLKMKDKGLKKQPG 578



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 126/268 (47%), Gaps = 22/268 (8%)

Query: 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD 349
           N +I   SK G +  +R +F+++ E  +++WT +ISGY++ G   EA   F ++   K +
Sbjct: 56  NWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRV-DAKKN 114

Query: 350 SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ-NCLISSYSKCGNVDLAY 408
            V    +V     S +++  E              P    V  N +I  Y++ G +D A 
Sbjct: 115 VVTWTAMVGGYIRSNKISDAEKLFN--------EMPNKNVVSWNTMIDGYAQNGRIDSAM 166

Query: 409 IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
            +FE+M   R+VVSWNT++      G  E A  L+ +M E     D  ++ +++      
Sbjct: 167 YLFEKMP-ERNVVSWNTVMSMLAQCGRIEEARRLFDRMPER----DVISWTAMIAGLSKN 221

Query: 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRA 528
           G  ++  ++F++M E N V      +  ++   A+   L +A  L  ++ E   P+ W  
Sbjct: 222 GRIDEARLLFDRMPERNVVS-----WNAMITGYAQNLRLDEALDLFERMPERDLPS-WNT 275

Query: 529 LLSGCVLHVGRFQDAEALRSGSQKKGII 556
           +++G + + G  + A  L +   KK +I
Sbjct: 276 MITGLIQN-GDLRRARKLFNEMPKKNVI 302


>gi|414881651|tpg|DAA58782.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
          Length = 736

 Score =  229 bits (583), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 144/462 (31%), Positives = 251/462 (54%), Gaps = 9/462 (1%)

Query: 78  LVAAAGLQNLELARSIHGLMVKFGLESD---LFEGLKNPYLVSCNAIVAGFINNKLFQQA 134
           L ++ G  N+ ++ ++  +  K G  SD   +F+G+ +   VS  A+V+G+   K  ++A
Sbjct: 149 LPSSCGSNNVFVSTALLNMYCKLGAVSDAKRVFDGMLHRNAVSWAAMVSGYATGKCSEEA 208

Query: 135 VLLFNF-FRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLD 193
             LF    +   L  N      V+          +   +HGL +K GL+  VSV NS++ 
Sbjct: 209 FELFRLMLQKCPLEKNEFVTTAVLSAVSVPLGLLMGTQLHGLVLKDGLVGFVSVENSLVT 268

Query: 194 MYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVA 253
           MY+    +DAA+++F   + ++ I+W+ M+  +     A  A ++F +M  S        
Sbjct: 269 MYAKAECMDAAMRVFGSSKERNSITWSAMITGYAQNGEANCAARMFLQMHSSGFTPTEFT 328

Query: 254 LLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT 313
            + +++  + +G L  GKQ H  +V  G ++++ + ++++ MY+KCG +  ++  F+Q+ 
Sbjct: 329 FVGVLNACSDMGALVVGKQTHCLMVKLGFETQVYVKSALVDMYAKCGCIGDAKDGFHQLY 388

Query: 314 E-KSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDS-ITLVSILTASGELAALEI 371
           +   +V WTA+I+G+VQNG   EAL  + +M  +K   + S +T+ S+L A   LAAL++
Sbjct: 389 DVDDVVLWTAMITGHVQNGEHEEALMLYSRM--DKQGIIPSYLTVTSVLRACACLAALDL 446

Query: 372 CLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYG 431
             QLH    +  F    SV   L + YSKCGN++ + +VF  M   RDV+SWN+II  + 
Sbjct: 447 GKQLHAQILKCRFSLGGSVGTALSTMYSKCGNLEDSMVVFRRMPD-RDVISWNSIISVFS 505

Query: 432 VNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQ 491
            +G G  AL ++ +M   G  PD  T++++L+AC H GL + G   F  M ++  + P+ 
Sbjct: 506 QHGRGSDALDMFEEMKLEGTAPDHITFINLLSACSHMGLVDRGWFYFRAMTKDYNLIPTL 565

Query: 492 EHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGC 533
           +HY C+VD+L+RAG L +A      +    G  +WR +L  C
Sbjct: 566 DHYACMVDILSRAGQLKEAKDFIDSITIDHGTCLWRIVLGAC 607



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 113/394 (28%), Positives = 195/394 (49%), Gaps = 35/394 (8%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           + S+ LL+ Y K G + +A+ +FD +  +N VSW+ ++ GY+     E++ + F  M+  
Sbjct: 159 FVSTALLNMYCKLGAVSDAKRVFDGMLHRNAVSWAAMVSGYATGKCSEEAFELFRLMLQK 218

Query: 66  -GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL------ESDL------------ 106
             L  N F    VL A +    L +   +HGL++K GL      E+ L            
Sbjct: 219 CPLEKNEFVTTAVLSAVSVPLGLLMGTQLHGLVLKDGLVGFVSVENSLVTMYAKAECMDA 278

Query: 107 ----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA 162
               F   K    ++ +A++ G+  N     A  +F     SG  P   T + V+  C  
Sbjct: 279 AMRVFGSSKERNSITWSAMITGYAQNGEANCAARMFLQMHSSGFTPTEFTFVGVLNACSD 338

Query: 163 LGSRALCELIHGLTIKLGLILDVSVNNSVLDMYS-CLMDLDAAIQIFREMECKDVISWTR 221
           +G+  + +  H L +KLG    V V ++++DMY+ C    DA     +  +  DV+ WT 
Sbjct: 339 MGALVVGKQTHCLMVKLGFETQVYVKSALVDMYAKCGCIGDAKDGFHQLYDVDDVVLWTA 398

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV--- 278
           M+   V      +AL ++  M K  II   + + +++   A L  L  GKQLHAQ++   
Sbjct: 399 MITGHVQNGEHEEALMLYSRMDKQGIIPSYLTVTSVLRACACLAALDLGKQLHAQILKCR 458

Query: 279 --LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
             LGG      +  ++  MYSKCG+L+ S  VF ++ ++ ++SW +IIS + Q+G   +A
Sbjct: 459 FSLGG-----SVGTALSTMYSKCGNLEDSMVVFRRMPDRDVISWNSIISVFSQHGRGSDA 513

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALE 370
           L+ F +M+ E T + D IT +++L+A   +  ++
Sbjct: 514 LDMFEEMKLEGT-APDHITFINLLSACSHMGLVD 546



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 156/327 (47%), Gaps = 24/327 (7%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L++ Y K+  +  A  +F    E+N ++WS +I GY+ NG    + + F  M  SG  P 
Sbjct: 266 LVTMYAKAECMDAAMRVFGSSKERNSITWSAMITGYAQNGEANCAARMFLQMHSSGFTPT 325

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF-------------------EGLK 111
            FT VGVL A + +  L + +  H LMVK G E+ ++                   +G  
Sbjct: 326 EFTFVGVLNACSDMGALVVGKQTHCLMVKLGFETQVYVKSALVDMYAKCGCIGDAKDGFH 385

Query: 112 NPY----LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRA 167
             Y    +V   A++ G + N   ++A++L++     G++P+ +T+ +V+R C  L +  
Sbjct: 386 QLYDVDDVVLWTAMITGHVQNGEHEEALMLYSRMDKQGIIPSYLTVTSVLRACACLAALD 445

Query: 168 LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
           L + +H   +K    L  SV  ++  MYS   +L+ ++ +FR M  +DVISW  ++ +F 
Sbjct: 446 LGKQLHAQILKCRFSLGGSVGTALSTMYSKCGNLEDSMVVFRRMPDRDVISWNSIISVFS 505

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGK-QLHAQVVLGGLQSEL 286
                 DAL +F EM+      D +  +NL+S  + +G + RG     A      L   L
Sbjct: 506 QHGRGSDALDMFEEMKLEGTAPDHITFINLLSACSHMGLVDRGWFYFRAMTKDYNLIPTL 565

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQIT 313
                ++ + S+ G L  ++   + IT
Sbjct: 566 DHYACMVDILSRAGQLKEAKDFIDSIT 592



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 115/415 (27%), Positives = 188/415 (45%), Gaps = 31/415 (7%)

Query: 170 ELIHGLTIKLGLILDVSVNNSVLDMYSCLMD--LDAAIQIFREMEC--KDVISWTRMMGL 225
           E +HG  +K G      V+NS++  Y  L    L AA  +F ++    +DV SW  ++  
Sbjct: 34  EALHGWALKSGAASHAPVSNSLITFYCSLPRPLLGAAYVVFADIPAALRDVASWNSLLNP 93

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
            +   +   AL  FR M  S        L +  S  A      R     A  V   L  +
Sbjct: 94  -LSRHHPVSALSHFRSMMSS----PEAVLPSPHSFAAAFTAAARVPSASAGAVTHALACK 148

Query: 286 LR---------LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
           L          +S +++ MY K G +  ++ VF+ +  ++ VSW A++SGY    C+ EA
Sbjct: 149 LPSSCGSNNVFVSTALLNMYCKLGAVSDAKRVFDGMLHRNAVSWAAMVSGYATGKCSEEA 208

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
              F  M Q+     +     ++L+A      L +  QLHG+  + G   + SV+N L++
Sbjct: 209 FELFRLMLQKCPLEKNEFVTTAVLSAVSVPLGLLMGTQLHGLVLKDGLVGFVSVENSLVT 268

Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
            Y+K   +D A  VF      R+ ++W+ +I GY  NG    A  ++ +M  +G  P   
Sbjct: 269 MYAKAECMDAAMRVFGS-SKERNSITWSAMITGYAQNGEANCAARMFLQMHSSGFTPTEF 327

Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIE---ENKVKPSQEHYGCVVDLLARAGCLSDASGL 513
           T++ +LNAC   G    G      M++   E +V         +VD+ A+ GC+ DA   
Sbjct: 328 TFVGVLNACSDMGALVVGKQTHCLMVKLGFETQVYVKS----ALVDMYAKCGCIGDAKDG 383

Query: 514 AGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFLNSTS 568
             +L +     +W A+++G V + G  ++A  L S   K+GII     S+L  TS
Sbjct: 384 FHQLYDVDDVVLWTAMITGHVQN-GEHEEALMLYSRMDKQGIIP----SYLTVTS 433


>gi|302788478|ref|XP_002976008.1| hypothetical protein SELMODRAFT_104228 [Selaginella moellendorffii]
 gi|300156284|gb|EFJ22913.1| hypothetical protein SELMODRAFT_104228 [Selaginella moellendorffii]
          Length = 495

 Score =  229 bits (583), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 140/467 (29%), Positives = 242/467 (51%), Gaps = 14/467 (2%)

Query: 105 DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
           + FE + +  ++S + +VA +       QA++LF      G+ PN VT L+V+  C    
Sbjct: 31  EFFESMTHRNVISWSTMVAAYAQRGDHDQALVLFQKMEEEGVEPNEVTFLSVLDACANAE 90

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
           +    E+IH L  +  L + + V  +++ MY     L  A Q+F  +  KDV++W+ M+ 
Sbjct: 91  AVEQGEMIHRLVARKKLDVGLIVGTALVGMYGKCSRLIEARQVFDGIVEKDVVTWSTMIS 150

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            +    +  +A+++F  M    +  + + L++++   +  G L  GK  H  VV+ G  +
Sbjct: 151 AYAQLGHVREAIQLFGYMNLDGVRPNEIILMSILGACSSAGALAEGKMTHELVVICGFGA 210

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           ++   N++I MY KCGDL S+++VF  +  + L+SW+A+++   ++G  ++A   F +M 
Sbjct: 211 DVSTGNTLIKMYGKCGDLASAKAVFGGMERRDLISWSAMLAVIAEHGHCKDAFVHFRRMD 270

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
            E     D +T VS+L A   L AL     +H      GF     ++N LI  Y KCG++
Sbjct: 271 LEGVKP-DYVTFVSLLDACSLLGALVEGHVIHTRIRAEGFQSVMYIENSLIDMYGKCGSL 329

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
             A  +F+ M   R+V++W T+I     +  G+ AL L+ +M + G  PD   +LSI+++
Sbjct: 330 QAAREIFDRMSH-RNVITWTTMITACVQHEQGKEALELFEEMEKAGVQPDQVAFLSIIHS 388

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C H+GL  +G + F +M+E+    P  EH+  ++DLL R+G L++A  L   +    G  
Sbjct: 389 CSHSGLVEEGRIYFLKMVEDQSFTPGVEHFVGMLDLLGRSGKLNEAEELMEFMPVEPGVV 448

Query: 525 IWRALLSGCVLHVGRFQDAEALRSGSQKKGIIKI------PGISFLN 565
            W  LLS C  H     D E  R+G    G++ +      P +SF N
Sbjct: 449 GWNTLLSACKTH----NDTE--RAGRVAGGMLVLGPGHAGPYVSFSN 489



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 119/452 (26%), Positives = 227/452 (50%), Gaps = 30/452 (6%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C   +  + LL+ Y K G ++EA   F+ +  +NV+SWS ++  Y+  G H++++  F  
Sbjct: 7   CCGEFVGNSLLNMYGKCGGVEEAREFFESMTHRNVISWSTMVAAYAQRGDHDQALVLFQK 66

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL--------------- 106
           M   G+ PN  T + VL A A  + +E    IH L+ +  L+  L               
Sbjct: 67  MEEEGVEPNEVTFLSVLDACANAEAVEQGEMIHRLVARKKLDVGLIVGTALVGMYGKCSR 126

Query: 107 -------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                  F+G+    +V+ + +++ +      ++A+ LF +    G+ PN + +++++  
Sbjct: 127 LIEARQVFDGIVEKDVVTWSTMISAYAQLGHVREAIQLFGYMNLDGVRPNEIILMSILGA 186

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C + G+ A  ++ H L +  G   DVS  N+++ MY    DL +A  +F  ME +D+ISW
Sbjct: 187 CSSAGALAEGKMTHELVVICGFGADVSTGNTLIKMYGKCGDLASAKAVFGGMERRDLISW 246

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           + M+ +  +  +  DA   FR M    +  D V  ++L+   ++LG L  G  +H ++  
Sbjct: 247 SAMLAVIAEHGHCKDAFVHFRRMDLEGVKPDYVTFVSLLDACSLLGALVEGHVIHTRIRA 306

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G QS + + NS+I MY KCG L ++R +F++++ +++++WT +I+  VQ+   +EAL  
Sbjct: 307 EGFQSVMYIENSLIDMYGKCGSLQAAREIFDRMSHRNVITWTTMITACVQHEQGKEALEL 366

Query: 340 FIKMRQE--KTDSVDSITLVSILTASG--ELAALEICLQLHGIAFEAGFPRYRSVQNCLI 395
           F +M +   + D V  ++++   + SG  E   +     +   +F  G   +  + + L 
Sbjct: 367 FEEMEKAGVQPDQVAFLSIIHSCSHSGLVEEGRIYFLKMVEDQSFTPGVEHFVGMLDLL- 425

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
               + G ++ A  + E M     VV WNT++
Sbjct: 426 ---GRSGKLNEAEELMEFMPVEPGVVGWNTLL 454



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 111/389 (28%), Positives = 187/389 (48%), Gaps = 12/389 (3%)

Query: 180 GLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIF 239
           GL     V NS+L+MY     ++ A + F  M  ++VISW+ M+  +        AL +F
Sbjct: 5   GLCCGEFVGNSLLNMYGKCGGVEEAREFFESMTHRNVISWSTMVAAYAQRGDHDQALVLF 64

Query: 240 REMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKC 299
           ++M +  +  + V  L+++   A    +++G+ +H  V    L   L +  +++ MY KC
Sbjct: 65  QKMEEEGVEPNEVTFLSVLDACANAEAVEQGEMIHRLVARKKLDVGLIVGTALVGMYGKC 124

Query: 300 GDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSI 359
             L  +R VF+ I EK +V+W+ +IS Y Q G  REA+  F  M  +     + I L+SI
Sbjct: 125 SRLIEARQVFDGIVEKDVVTWSTMISAYAQLGHVREAIQLFGYMNLDGVRP-NEIILMSI 183

Query: 360 LTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRD 419
           L A     AL      H +    GF    S  N LI  Y KCG++  A  VF  M   RD
Sbjct: 184 LGACSSAGALAEGKMTHELVVICGFGADVSTGNTLIKMYGKCGDLASAKAVFGGME-RRD 242

Query: 420 VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFN 479
           ++SW+ ++     +GH + A   + +M   G  PD  T++S+L+AC   G   +G VI  
Sbjct: 243 LISWSAMLAVIAEHGHCKDAFVHFRRMDLEGVKPDYVTFVSLLDACSLLGALVEGHVIHT 302

Query: 480 QMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI--WRALLSGCVLHV 537
           ++  E   +        ++D+  + G L  A  +  ++      N+  W  +++ CV H 
Sbjct: 303 RIRAEG-FQSVMYIENSLIDMYGKCGSLQAAREIFDRMSH---RNVITWTTMITACVQHE 358

Query: 538 GRFQDAEALRSGSQ-KKGIIKIPGISFLN 565
              Q  EAL    + +K  ++   ++FL+
Sbjct: 359 ---QGKEALELFEEMEKAGVQPDQVAFLS 384


>gi|357143265|ref|XP_003572861.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g01580-like [Brachypodium distachyon]
          Length = 697

 Score =  229 bits (583), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 159/561 (28%), Positives = 280/561 (49%), Gaps = 42/561 (7%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           ++S  L S+   S     A +LFDEIP       + ++        H ++ +    ++L 
Sbjct: 37  HSSHHLTSHVLASYPTGLARHLFDEIPVPTPRLANALLRA------HVRARQWCDALLLI 90

Query: 66  GLL---PNSFTMVGVLVAAAGLQNLELARSIHGLMVK---------------------FG 101
             L   P++FT+  +L A A L  L   R++H L ++                      G
Sbjct: 91  PCLRVRPDAFTLSLLLKACAMLPALAHGRALHALAIRSCTAYTDAFVAAALVHMYAKCRG 150

Query: 102 LESDL--FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFN-FFRGSGLVPNAVTMLTVIR 158
           +   +  +     P +V   ++V G+  N++  +A+  F+    G G +P+ VT+++VI 
Sbjct: 151 MVGSINAYNAFSEPDMVLRTSMVTGYEQNRMAAEALEFFSRHVVGQGFMPSPVTLVSVIS 210

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
               L      +  H   I+     D+ + N++L  Y  +  + AA ++F  M  KDV++
Sbjct: 211 AAAQLKDVLNGQACHAFVIRNNFEYDLVLVNAILGFYMRIGAVQAARRLFEGMTEKDVVT 270

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           W+ M+  +V      +AL  +++M ++ I  + V +++++   ++  D++ G+++H   V
Sbjct: 271 WSCMVTGYVQSGDICEALTAYKKMVEAGIKPNAVTVVSVVQACSLAPDIEEGRRVHDIAV 330

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
             G + E+ ++ +++ MY KC   + +  +F ++++K  V+W  +ISG+ QNG   E++ 
Sbjct: 331 KIGCELEMTVATALVDMYMKCSCHEEAMQLFCRMSKKDAVAWAVVISGFTQNGLPDESMR 390

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
            F K         D++T+V +L A  E   +     LHG     GF     V   L+  Y
Sbjct: 391 VF-KCMLFGGPFPDAVTMVKVLAACSESGVMRQAFCLHGYLVITGFCDKIFVAAALVDLY 449

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
           SKCGN+  A  VFE     +DVV W+++I GYGV+G G+ A+ L+  M  +   P+S T+
Sbjct: 450 SKCGNLGCAVRVFES-AMEKDVVLWSSMISGYGVHGLGQQAVELFQMMVASSVKPNSLTF 508

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
           +S+L+AC H+GL  +G  IF  M +   V P+  H+  +VDLL RAG L +A+    KLL
Sbjct: 509 VSVLSACSHSGLVQEGKRIFESMTQVYGVVPNAVHHSAMVDLLGRAGELQEAA----KLL 564

Query: 519 EGMG---PNIWRALLSGCVLH 536
            G G    + W ALL+ C  H
Sbjct: 565 HGNGRADAHTWCALLAACRAH 585



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 92/382 (24%), Positives = 199/382 (52%), Gaps = 24/382 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS-HM 62
           D + ++ L+  Y K   +  + N ++   E ++V  + ++ GY  N    ++++ FS H+
Sbjct: 134 DAFVAAALVHMYAKCRGMVGSINAYNAFSEPDMVLRTSMVTGYEQNRMAAEALEFFSRHV 193

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
           +  G +P+  T+V V+ AAA L+++   ++ H  +++   E D                 
Sbjct: 194 VGQGFMPSPVTLVSVISAAAQLKDVLNGQACHAFVIRNNFEYDLVLVNAILGFYMRIGAV 253

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                LFEG+    +V+ + +V G++ +    +A+  +     +G+ PNAVT+++V++ C
Sbjct: 254 QAARRLFEGMTEKDVVTWSCMVTGYVQSGDICEALTAYKKMVEAGIKPNAVTVVSVVQAC 313

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
                      +H + +K+G  L+++V  +++DMY      + A+Q+F  M  KD ++W 
Sbjct: 314 SLAPDIEEGRRVHDIAVKIGCELEMTVATALVDMYMKCSCHEEAMQLFCRMSKKDAVAWA 373

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++  F       +++++F+ M       D V ++ +++  +  G +++   LH  +V+ 
Sbjct: 374 VVISGFTQNGLPDESMRVFKCMLFGGPFPDAVTMVKVLAACSESGVMRQAFCLHGYLVIT 433

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
           G   ++ ++ +++ +YSKCG+L  +  VF    EK +V W+++ISGY  +G  ++A+  F
Sbjct: 434 GFCDKIFVAAALVDLYSKCGNLGCAVRVFESAMEKDVVLWSSMISGYGVHGLGQQAVELF 493

Query: 341 IKMRQEKTDSVDSITLVSILTA 362
            +M    +   +S+T VS+L+A
Sbjct: 494 -QMMVASSVKPNSLTFVSVLSA 514



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 86/183 (46%), Gaps = 22/183 (12%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C   + ++ L+  Y K G +  A  +F+   EK+VV WS +I GY ++G  +++++ F  
Sbjct: 436 CDKIFVAAALVDLYSKCGNLGCAVRVFESAMEKDVVLWSSMISGYGVHGLGQQAVELFQM 495

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAI 121
           M+ S + PNS T V VL A +           H  +V+ G    +FE +   Y V  NA+
Sbjct: 496 MVASSVKPNSLTFVSVLSACS-----------HSGLVQEG--KRIFESMTQVYGVVPNAV 542

Query: 122 VAGFINNKL-----FQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLT 176
               + + L      Q+A  L +   G+G   +A T   ++  C A     + E++    
Sbjct: 543 HHSAMVDLLGRAGELQEAAKLLH---GNGRA-DAHTWCALLAACRAHHDTEMSEVVAAKL 598

Query: 177 IKL 179
           +KL
Sbjct: 599 LKL 601


>gi|356529924|ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 694

 Score =  229 bits (583), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 135/442 (30%), Positives = 235/442 (53%), Gaps = 6/442 (1%)

Query: 99  KFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLF-NFFRGSGLVPNAVTMLTVI 157
           + GL  +LF+ +    +VS N ++AG+++     + ++LF N        PN     T +
Sbjct: 65  QLGLARNLFDAMPLRNVVSWNVLMAGYLHGGNHLEVLVLFKNMVSLQNACPNEYVFTTAL 124

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM---ECK 214
             C   G        HGL  K GL+    V ++++ MYS    ++ A+Q+   +      
Sbjct: 125 SACSHGGRVKEGMQCHGLLFKFGLVCHQYVKSALVHMYSRCSHVELALQVLDTVPGEHVN 184

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
           D+ S+  ++   V+     +A+++ R M    +  D V  + ++ + A + DL+ G ++H
Sbjct: 185 DIFSYNSVLNALVESGRGEEAVEVLRRMVDECVAWDHVTYVGVMGLCAQIRDLQLGLRVH 244

Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
           A+++ GGL  +  + + +I MY KCG++ ++R+VF+ +  +++V WTA+++ Y+QNG   
Sbjct: 245 ARLLRGGLMFDEFVGSMLIDMYGKCGEVLNARNVFDGLQNRNVVVWTALMTAYLQNGYFE 304

Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
           E+LN F  M +E T   +  T   +L A   +AAL     LH    + GF  +  V+N L
Sbjct: 305 ESLNLFTCMDREGTLP-NEYTFAVLLNACAGIAALRHGDLLHARVEKLGFKNHVIVRNAL 363

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           I+ YSK G++D +Y VF +M + RD+++WN +I GY  +G G+ AL ++  M    E P+
Sbjct: 364 INMYSKSGSIDSSYNVFTDMIY-RDIITWNAMICGYSHHGLGKQALQVFQDMVSAEECPN 422

Query: 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLA 514
             T++ +L+A  H GL  +G    N ++   K++P  EHY C+V LL+RAG L +A    
Sbjct: 423 YVTFIGVLSAYSHLGLVKEGFYYLNHLMRNFKIEPGLEHYTCMVALLSRAGLLDEAENFM 482

Query: 515 GKLLEGMGPNIWRALLSGCVLH 536
                      WR LL+ C +H
Sbjct: 483 KTTQVKWDVVAWRTLLNACHVH 504



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 121/511 (23%), Positives = 233/511 (45%), Gaps = 38/511 (7%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM-LSGL 67
           + L+  Y K G++  A NLFD +P +NVVSW++++ GY   G H + +  F +M+ L   
Sbjct: 54  NSLVHLYVKCGQLGLARNLFDAMPLRNVVSWNVLMAGYLHGGNHLEVLVLFKNMVSLQNA 113

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES----------------------- 104
            PN +     L A +    ++     HGL+ KFGL                         
Sbjct: 114 CPNEYVFTTALSACSHGGRVKEGMQCHGLLFKFGLVCHQYVKSALVHMYSRCSHVELALQ 173

Query: 105 --DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA 162
             D   G     + S N+++   + +   ++AV +        +  + VT + V+  C  
Sbjct: 174 VLDTVPGEHVNDIFSYNSVLNALVESGRGEEAVEVLRRMVDECVAWDHVTYVGVMGLCAQ 233

Query: 163 LGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
           +    L   +H   ++ GL+ D  V + ++DMY    ++  A  +F  ++ ++V+ WT +
Sbjct: 234 IRDLQLGLRVHARLLRGGLMFDEFVGSMLIDMYGKCGEVLNARNVFDGLQNRNVVVWTAL 293

Query: 223 MGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL 282
           M  ++   Y  ++L +F  M +   + +      L++  A +  L+ G  LHA+V   G 
Sbjct: 294 MTAYLQNGYFEESLNLFTCMDREGTLPNEYTFAVLLNACAGIAALRHGDLLHARVEKLGF 353

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
           ++ + + N++I MYSK G +DSS +VF  +  + +++W A+I GY  +G  ++AL  F  
Sbjct: 354 KNHVIVRNALINMYSKSGSIDSSYNVFTDMIYRDIITWNAMICGYSHHGLGKQALQVFQD 413

Query: 343 MRQEKTDSVDSITLVSILTASGELAALE-----ICLQLHGIAFEAGFPRYRSVQNCLISS 397
           M   + +  + +T + +L+A   L  ++     +   +     E G   Y     C+++ 
Sbjct: 414 MVSAE-ECPNYVTFIGVLSAYSHLGLVKEGFYYLNHLMRNFKIEPGLEHY----TCMVAL 468

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
            S+ G +D A    +      DVV+W T++    V+ + +    +   + +  +  D  T
Sbjct: 469 LSRAGLLDEAENFMKTTQVKWDVVAWRTLLNACHVHRNYDLGRRIAESVLQM-DPHDVGT 527

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVK 488
           Y  + N    A    DG+V   +++ E  +K
Sbjct: 528 YTLLSNMYAKARRW-DGVVTIRKLMRERNIK 557



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 146/306 (47%), Gaps = 30/306 (9%)

Query: 267 LKRGKQLHAQVVLGGL---QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAI 323
           L  GK +HAQ ++       S +   NS++ +Y KCG L  +R++F+ +  +++VSW  +
Sbjct: 28  LPFGKAMHAQFLIRNQTSNHSHISHLNSLVHLYVKCGQLGLARNLFDAMPLRNVVSWNVL 87

Query: 324 ISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG 383
           ++GY+  G   E L  F  M   +    +     + L+A      ++  +Q HG+ F+ G
Sbjct: 88  MAGYLHGGNHLEVLVLFKNMVSLQNACPNEYVFTTALSACSHGGRVKEGMQCHGLLFKFG 147

Query: 384 FPRYRSVQNCLISSYSKCGNVDLAYIVFEEMG--FLRDVVSWNTIIYGYGVNGHGETALA 441
              ++ V++ L+  YS+C +V+LA  V + +    + D+ S+N+++     +G GE A+ 
Sbjct: 148 LVCHQYVKSALVHMYSRCSHVELALQVLDTVPGEHVNDIFSYNSVLNALVESGRGEEAVE 207

Query: 442 LYHKMTETGEVPDSSTYLSILNACG-----------HAGLTNDGLVIFNQMIEENKVKPS 490
           +  +M +     D  TY+ ++  C            HA L   GL +F++ +        
Sbjct: 208 VLRRMVDECVAWDHVTYVGVMGLCAQIRDLQLGLRVHARLLRGGL-MFDEFVG------- 259

Query: 491 QEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGS 550
                 ++D+  + G + +A  +    L+     +W AL++   L  G F+++  L +  
Sbjct: 260 ----SMLIDMYGKCGEVLNARNVFDG-LQNRNVVVWTALMTA-YLQNGYFEESLNLFTCM 313

Query: 551 QKKGII 556
            ++G +
Sbjct: 314 DREGTL 319



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 114/255 (44%), Gaps = 46/255 (18%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  S L+  Y K G++  A N+FD +  +NVV W+ ++  Y  NG+ E+S+  F+ M 
Sbjct: 255 DEFVGSMLIDMYGKCGEVLNARNVFDGLQNRNVVVWTALMTAYLQNGYFEESLNLFTCMD 314

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY------- 114
             G LPN +T   +L A AG+  L     +H  + K G ++ +     L N Y       
Sbjct: 315 REGTLPNEYTFAVLLNACAGIAALRHGDLLHARVEKLGFKNHVIVRNALINMYSKSGSID 374

Query: 115 -------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR--- 158
                        +++ NA++ G+ ++ L +QA+ +F     +   PN VT + V+    
Sbjct: 375 SSYNVFTDMIYRDIITWNAMICGYSHHGLGKQALQVFQDMVSAEECPNYVTFIGVLSAYS 434

Query: 159 --GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMD-------LDAAIQIFR 209
             G V  G   L  L+    I+ G           L+ Y+C++        LD A    +
Sbjct: 435 HLGLVKEGFYYLNHLMRNFKIEPG-----------LEHYTCMVALLSRAGLLDEAENFMK 483

Query: 210 EMECK-DVISWTRMM 223
             + K DV++W  ++
Sbjct: 484 TTQVKWDVVAWRTLL 498


>gi|302756495|ref|XP_002961671.1| hypothetical protein SELMODRAFT_264 [Selaginella moellendorffii]
 gi|300170330|gb|EFJ36931.1| hypothetical protein SELMODRAFT_264 [Selaginella moellendorffii]
          Length = 934

 Score =  229 bits (583), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 151/565 (26%), Positives = 274/565 (48%), Gaps = 49/565 (8%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           ++S Y K G +++A ++F  +P ++VV+ + ++   ++ G    ++K F +M+  G+  +
Sbjct: 349 IVSMYGKCGSLEDAWDVFHRVPRRSVVTCNGMMGACAVQGDSSGALKLFRYMVHEGIEFD 408

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF----------------------E 108
           + T +  L A +G   L      H  M++ GLE D+F                      E
Sbjct: 409 NITFLSALCACSGTSGLSHGEFFHARMLECGLELDIFVANALVNMYGKCGKVEAAEHVFE 468

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            L    + + NA++  ++ N+  +  +L+F     SG  P+ VT    +  C     R L
Sbjct: 469 ELPEQDVRTWNAMILAYVQNEEERSGLLVFRHMMQSGYKPDEVTFAITLNAC--YHPRFL 526

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG---- 224
            + +H L  + G I +  V N+++ MY     L+   Q+F +++ + + SW  M+     
Sbjct: 527 RD-VHSLISETG-ISNTVVQNALVVMYGRFGLLEEGYQVFEKLDQESITSWNVMIASCAQ 584

Query: 225 ------LFVDFEYAGD--ALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG-KQLHA 275
                 +F   +   D  ALK+F  M+++ +  D  + + ++   + +G  +     L A
Sbjct: 585 TCWNSVIFAHVQSGRDSEALKMFWRMQQAGVWPDKTSFVAVVKAYSNVGMTEPEIDWLRA 644

Query: 276 QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
            +    ++  + + N++I+MY +CG    +R +F+ + E+  V+W  ++S   Q    R+
Sbjct: 645 VIANSDVEDGVPIGNALISMYGRCGSFGKARDLFDSMAERDAVTWNTMMSVSEQLEHGRD 704

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAALE----ICLQLHGIAFEAGFPRYRSVQ 391
           ++  F +M QE T   D +T++++L     L AL+    IC+ L      A     + + 
Sbjct: 705 SIQLFRQMLQEGTPP-DKVTILTVLNVCASLPALQEGKAICVWLDHTPLSAN----QMIG 759

Query: 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE 451
           N +++ Y+KCG+ D A  +F  M   RD VSWN +I  YG    G  A  ++  M   G 
Sbjct: 760 NAILNMYAKCGSRDEARRIFSVMQG-RDAVSWNALIGAYGSYSRGRYAFQIFQAMQLEGS 818

Query: 452 VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDAS 511
            PD+ T+ +IL+ C H GL  + +  F  M E+  V+    HYGC+VDLL R G + +A 
Sbjct: 819 TPDAVTFTTILSVCSHGGLLGEAVKWFRWMREDYYVEAETGHYGCIVDLLGRLGRVPEAE 878

Query: 512 GLAGKLLEGMGPNIWRALLSGCVLH 536
            +A K+  G  P +W  LLS C +H
Sbjct: 879 EVAEKMPAGTDPIVWTTLLSACQVH 903



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 155/575 (26%), Positives = 270/575 (46%), Gaps = 39/575 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEK---NVVSWSIVIHGYSINGFHEKSMKAFS 60
           DP   + L+  Y K G + +A  +F ++ E    N+V+W+ +I  Y+ NG  + +++ F 
Sbjct: 39  DPVVGNWLIQMYLKCGSLIDASQVFYQLLETSVVNLVAWTALIAAYARNGQTKLAIRLFQ 98

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHG-------------LMVKFGLESDL- 106
            M L G  P+  T+V +  A    +NLE  + IH              L+  +G    L 
Sbjct: 99  QMQLEGNSPDRITLVTIFEACGNPENLEDGKKIHAYLSCNSDVVLGSSLITMYGKCGSLS 158

Query: 107 -----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                F+ ++    V+ N+++  FI +   ++A+ L+      G +P+  T LTV+    
Sbjct: 159 EACLMFQSMEEWNTVAWNSLMGAFIQHDRVEEAMELYWEMLQCGFLPSRPTFLTVLAAIS 218

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
           +L S    +L+H    + G   DV V  ++++MY     +  A+++F  M   DVI W+ 
Sbjct: 219 SLESLRHGKLVHDTLAEAGHEDDVVVQTALVNMYGKCGSVVEAVEVFDRMPRHDVILWSA 278

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++   V+     ++L++FR+M+      + V L++++S       L+ GK +H  VV  G
Sbjct: 279 VISAHVNCAEYEESLRLFRKMQLEGNRPNNVTLVSVLSACEGPQALETGKGIHECVVEAG 338

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
            + +L + N+I++MY KCG L+ +  VF+++  +S+V+   ++      G +  AL  F 
Sbjct: 339 YEGDLIVGNAIVSMYGKCGSLEDAWDVFHRVPRRSVVTCNGMMGACAVQGDSSGALKLFR 398

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
            M  E  +  D+IT +S L A    + L      H    E G      V N L++ Y KC
Sbjct: 399 YMVHEGIE-FDNITFLSALCACSGTSGLSHGEFFHARMLECGLELDIFVANALVNMYGKC 457

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G V+ A  VFEE+   +DV +WN +I  Y  N    + L ++  M ++G  PD  T+   
Sbjct: 458 GKVEAAEHVFEELP-EQDVRTWNAMILAYVQNEEERSGLLVFRHMMQSGYKPDEVTFAIT 516

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           LNAC H     D     + +I E  +  +      VV +  R G L +   +  K L+  
Sbjct: 517 LNACYHPRFLRD----VHSLISETGISNTVVQNALVV-MYGRFGLLEEGYQVFEK-LDQE 570

Query: 522 GPNIWRALLSGCV---------LHVGRFQDAEALR 547
               W  +++ C           HV   +D+EAL+
Sbjct: 571 SITSWNVMIASCAQTCWNSVIFAHVQSGRDSEALK 605



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 114/468 (24%), Positives = 217/468 (46%), Gaps = 35/468 (7%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D + ++ L++ Y K GK++ AE++F+E+PE++V +W+ +I  Y  N      +  F HM
Sbjct: 442 LDIFVANALVNMYGKCGKVEAAEHVFEELPEQDVRTWNAMILAYVQNEEERSGLLVFRHM 501

Query: 63  MLSGLLPNSFTM---------------VGVLVAAAGLQNLELARSIHGLMVKFGLESD-- 105
           M SG  P+  T                V  L++  G+ N  +  ++  +  +FGL  +  
Sbjct: 502 MQSGYKPDEVTFAITLNACYHPRFLRDVHSLISETGISNTVVQNALVVMYGRFGLLEEGY 561

Query: 106 -LFEGLKNPYLVSCNAIVAGFI----NNKLF--------QQAVLLFNFFRGSGLVPNAVT 152
            +FE L    + S N ++A       N+ +F         +A+ +F   + +G+ P+  +
Sbjct: 562 QVFEKLDQESITSWNVMIASCAQTCWNSVIFAHVQSGRDSEALKMFWRMQQAGVWPDKTS 621

Query: 153 MLTVIRGCVALG-SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM 211
            + V++    +G +    + +  +     +   V + N+++ MY        A  +F  M
Sbjct: 622 FVAVVKAYSNVGMTEPEIDWLRAVIANSDVEDGVPIGNALISMYGRCGSFGKARDLFDSM 681

Query: 212 ECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGK 271
             +D ++W  MM +    E+  D++++FR+M +     D V +L +++V A L  L+ GK
Sbjct: 682 AERDAVTWNTMMSVSEQLEHGRDSIQLFRQMLQEGTPPDKVTILTVLNVCASLPALQEGK 741

Query: 272 QLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNG 331
            +   +    L +   + N+I+ MY+KCG  D +R +F+ +  +  VSW A+I  Y    
Sbjct: 742 AICVWLDHTPLSANQMIGNAILNMYAKCGSRDEARRIFSVMQGRDAVSWNALIGAYGSYS 801

Query: 332 CAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ 391
             R A   F  M+ E + + D++T  +IL+       L   ++      E  +    +  
Sbjct: 802 RGRYAFQIFQAMQLEGS-TPDAVTFTTILSVCSHGGLLGEAVKWFRWMREDYYVEAETGH 860

Query: 392 -NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGET 438
             C++    + G V  A  V E+M    D + W T++    V  HGET
Sbjct: 861 YGCIVDLLGRLGRVPEAEEVAEKMPAGTDPIVWTTLLSACQV--HGET 906



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 148/313 (47%), Gaps = 8/313 (2%)

Query: 156 VIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFR---EME 212
           ++R C      A    IH    +     D  V N ++ MY     L  A Q+F    E  
Sbjct: 11  LLRQCSRSKDLARGRQIHASITRSSAPQDPVVGNWLIQMYLKCGSLIDASQVFYQLLETS 70

Query: 213 CKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQ 272
             ++++WT ++  +        A+++F++M+      D + L+ +        +L+ GK+
Sbjct: 71  VVNLVAWTALIAAYARNGQTKLAIRLFQQMQLEGNSPDRITLVTIFEACGNPENLEDGKK 130

Query: 273 LHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC 332
           +HA +      S++ L +S+I MY KCG L  +  +F  + E + V+W +++  ++Q+  
Sbjct: 131 IHAYL---SCNSDVVLGSSLITMYGKCGSLSEACLMFQSMEEWNTVAWNSLMGAFIQHDR 187

Query: 333 AREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN 392
             EA+  + +M Q         T +++L A   L +L     +H    EAG      VQ 
Sbjct: 188 VEEAMELYWEMLQCGFLP-SRPTFLTVLAAISSLESLRHGKLVHDTLAEAGHEDDVVVQT 246

Query: 393 CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV 452
            L++ Y KCG+V  A  VF+ M    DV+ W+ +I  +      E +L L+ KM   G  
Sbjct: 247 ALVNMYGKCGSVVEAVEVFDRMP-RHDVILWSAVISAHVNCAEYEESLRLFRKMQLEGNR 305

Query: 453 PDSSTYLSILNAC 465
           P++ T +S+L+AC
Sbjct: 306 PNNVTLVSVLSAC 318



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 116/225 (51%), Gaps = 26/225 (11%)

Query: 266 DLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKS---LVSWTA 322
           DL RG+Q+HA +       +  + N +I MY KCG L  +  VF Q+ E S   LV+WTA
Sbjct: 20  DLARGRQIHASITRSSAPQDPVVGNWLIQMYLKCGSLIDASQVFYQLLETSVVNLVAWTA 79

Query: 323 IISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEA 382
           +I+ Y +NG  + A+  F +M+ E  +S D ITLV+I  A G    LE   ++H      
Sbjct: 80  LIAAYARNGQTKLAIRLFQQMQLEG-NSPDRITLVTIFEACGNPENLEDGKKIHA----- 133

Query: 383 GFPRYRSVQ------NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHG 436
               Y S        + LI+ Y KCG++  A ++F+ M    + V+WN+++  +  +   
Sbjct: 134 ----YLSCNSDVVLGSSLITMYGKCGSLSEACLMFQSMEEW-NTVAWNSLMGAFIQHDRV 188

Query: 437 ETALALYHKMTETGEVPDSSTYLSILNACG------HAGLTNDGL 475
           E A+ LY +M + G +P   T+L++L A        H  L +D L
Sbjct: 189 EEAMELYWEMLQCGFLPSRPTFLTVLAAISSLESLRHGKLVHDTL 233


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  229 bits (583), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 147/525 (28%), Positives = 257/525 (48%), Gaps = 72/525 (13%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +FE ++ P L+  N +  G   +     A+ L+      GL+PN+ T   +++ C  L +
Sbjct: 19  VFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKLKA 78

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMY---------------SCLMD---------- 200
                 IHG  +KLG  LD+ V+ S++ MY               S   D          
Sbjct: 79  SKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTALVTG 138

Query: 201 ------LDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVAL 254
                 +++A  +F E+  KDV+SW  M+  +V+     +AL++F+EM K+ +  D   +
Sbjct: 139 YASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDESTM 198

Query: 255 LNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE 314
           + +IS +A  G ++ G+Q+H+ +   G  S L++ N++I  YSKCG+++++  +F  ++ 
Sbjct: 199 VTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGLFLGLSY 258

Query: 315 KSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQ 374
           K ++SW  +I GY      +EAL  F +M +   +S + +T++SIL A   L A++I   
Sbjct: 259 KDVISWNILIGGYTHLNLYKEALLLFQEMLR-SGESPNDVTMLSILHACAHLGAIDIGRW 317

Query: 375 LHGIAFE--AGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGV 432
           +H    +   G     S++  LI  YSKCG+++ A+ VF  M   + + +WN +I+G+ +
Sbjct: 318 IHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSM-LHKSLPAWNAMIFGFAM 376

Query: 433 NGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQE 492
           +G    A  ++ +M +    PD  T++ +L+AC HAG+ + G  IF  M    K+ P  E
Sbjct: 377 HGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTHNYKITPKLE 436

Query: 493 HYGCVVDLLARAGCLSDASGLAGKLLEGMGPN--IWRALLSGCVLH-------------- 536
           HYGC++DLL  +G   +A  +   +   M P+  IW +LL  C +H              
Sbjct: 437 HYGCMIDLLGHSGLFKEAEEMISTMT--MEPDGVIWCSLLKACKMHGNVELGEKFAQNLF 494

Query: 537 -------------------VGRFQDAEALRSGSQKKGIIKIPGIS 562
                               GR+ +   +R     KG+ K+PG S
Sbjct: 495 KIEPNNPGSYVLLSNIYATAGRWNEVARIRGLLNDKGMKKVPGCS 539



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 130/523 (24%), Positives = 237/523 (45%), Gaps = 68/523 (13%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           +LS +F+   +  A ++F+ I E N++ W+ +  G++++     ++K +  M+  GLLPN
Sbjct: 5   ILSPHFEG--LPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPN 62

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF----------------------- 107
           S+T   +L + A L+  +    IHG ++K G E DL+                       
Sbjct: 63  SYTFPFLLKSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFD 122

Query: 108 -----------------------EGLKNPY-------LVSCNAIVAGFINNKLFQQAVLL 137
                                  E  +N +       +VS NA+++G++    +++A+ L
Sbjct: 123 RSSHRDVVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALEL 182

Query: 138 FNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSC 197
           F     + + P+  TM+TVI      GS  L   +H      G   ++ + N+++D YS 
Sbjct: 183 FKEMMKTNVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSK 242

Query: 198 LMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNL 257
             +++ A  +F  +  KDVISW  ++G +       +AL +F+EM +S    + V +L++
Sbjct: 243 CGEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSI 302

Query: 258 ISVNAILGDLKRGKQLHAQV--VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK 315
           +   A LG +  G+ +H  +   L G+ +   L  S+I MYSKCGD++++  VFN +  K
Sbjct: 303 LHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHK 362

Query: 316 SLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQL 375
           SL +W A+I G+  +G A  A + F +MR+ +    D IT V +L+A      L++   +
Sbjct: 363 SLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKP-DDITFVGLLSACSHAGMLDLGRHI 421

Query: 376 -----HGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGY 430
                H          Y     C+I      G    A  +   M    D V W +++   
Sbjct: 422 FRSMTHNYKITPKLEHY----GCMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCSLLKAC 477

Query: 431 GVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTND 473
            ++G+ E        + +  E  +  +Y+ + N    AG  N+
Sbjct: 478 KMHGNVELGEKFAQNLFKI-EPNNPGSYVLLSNIYATAGRWNE 519



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 94/294 (31%), Positives = 151/294 (51%), Gaps = 24/294 (8%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D  + + L++ Y   G I+ A N+FDEIP K+VVSW+ +I GY   G ++++++ F  MM
Sbjct: 128 DVVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMM 187

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
            + + P+  TMV V+ A+A   ++EL R +H  +   G  S+                  
Sbjct: 188 KTNVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEME 247

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               LF GL    ++S N ++ G+ +  L+++A+LLF     SG  PN VTML+++  C 
Sbjct: 248 TACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACA 307

Query: 162 ALGSRALCELIHGLTIKL--GLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
            LG+  +   IH    K   G+    S+  S++DMYS   D++AA Q+F  M  K + +W
Sbjct: 308 HLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAW 367

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQL 273
             M+  F     A  A  IF  MRK+ I  D +  + L+S  +  G L  G+ +
Sbjct: 368 NAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHI 421


>gi|449438685|ref|XP_004137118.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
 gi|449528041|ref|XP_004171015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 868

 Score =  229 bits (583), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 157/567 (27%), Positives = 267/567 (47%), Gaps = 25/567 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D    S L+  Y K   ++++ ++F E+P+KN +SWS  I G   N    + +K F  M 
Sbjct: 191 DVVTGSALVDMYAKCNSLEDSLDVFSELPDKNWISWSAAIAGCVQNDQLLRGLKLFKEMQ 250

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
             G+  +  T   V  + AGL    L   +H   +K    SD                  
Sbjct: 251 RKGIGVSQSTYASVFRSCAGLSASRLGTQLHCHALKTDFGSDVIVGTATLDMYAKCDNMS 310

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               LF  L +  L S NA++ G+  N+   QA  LF   + +    + V++   +    
Sbjct: 311 DAYKLFSLLPDHNLQSYNAMIIGYARNEQGFQAFKLFLQLQKNSFSFDEVSLSGALSAAA 370

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            +   +    +HGL IK  L  ++ V N++LDMY     L  A  +F EME +D +SW  
Sbjct: 371 VIKGHSEGLQLHGLAIKSNLSSNICVANAILDMYGKCGALVEASGLFDEMEIRDPVSWNA 430

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           ++      E  G  L  F  M +S++  D     +++   A       G ++H +++  G
Sbjct: 431 IITACEQNESEGKTLSHFGAMLRSKMEPDEFTYGSVLKACAGQRAFSNGMEVHGRIIKSG 490

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
           +  ++ + ++++ MYSKCG ++ +  +  ++ E+++VSW AIISG+     + ++   F 
Sbjct: 491 MGLKMFVGSALVDMYSKCGMMEEAEKIHYRLEEQTMVSWNAIISGFSLQKKSEDSQRFFS 550

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
            M +   +  D+ T  ++L     LA + +  Q+H    +        + + L+  YSKC
Sbjct: 551 HMLEMGVEP-DNFTYATVLDTCANLATVGLGKQIHAQMIKLELLSDVYITSTLVDMYSKC 609

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           GN+  + ++F +    RD V+WN +I G+  +G GE AL L+  M      P+ +T++S+
Sbjct: 610 GNMHDSLLMFRKAP-KRDSVTWNAMICGFAYHGLGEEALELFEHMLHENIKPNHATFVSV 668

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L AC H G    GL  F +M     ++P  EHY C+VD+L R+G + +A  L   +    
Sbjct: 669 LRACSHVGNAKKGLFYFQKMASIYALEPQLEHYSCMVDILGRSGQVEEALRLIQDMPFEA 728

Query: 522 GPNIWRALLSGCVLHVGRFQDAEALRS 548
              IWR LLS C +  G  + AE   S
Sbjct: 729 DAIIWRTLLSICKIQ-GNVEVAEKAAS 754



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 147/547 (26%), Positives = 256/547 (46%), Gaps = 37/547 (6%)

Query: 18  SGKIKEAENLFDEIPEK-NVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVG 76
           +G+++ A+ +F+ +P   +VVSW+ +I GY  NG  +KS+  F  M   G++ +  T+  
Sbjct: 103 AGRMELAQAVFNSMPHHGDVVSWNSLISGYLQNGDIQKSIAVFLKMRDLGVMFDHTTLAV 162

Query: 77  VLVAAAGLQNLELARSIHGLMVKFGLESDL----------------------FEGLKNPY 114
            L   + L++  L   IHG+ V+ G + D+                      F  L +  
Sbjct: 163 SLKICSLLEDQVLGIQIHGIAVQMGFDYDVVTGSALVDMYAKCNSLEDSLDVFSELPDKN 222

Query: 115 LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHG 174
            +S +A +AG + N    + + LF   +  G+  +  T  +V R C  L +  L   +H 
Sbjct: 223 WISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTYASVFRSCAGLSASRLGTQLHC 282

Query: 175 LTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGD 234
             +K     DV V  + LDMY+   ++  A ++F  +   ++ S+  M+  +   E    
Sbjct: 283 HALKTDFGSDVIVGTATLDMYAKCDNMSDAYKLFSLLPDHNLQSYNAMIIGYARNEQGFQ 342

Query: 235 ALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIA 294
           A K+F +++K+    D V+L   +S  A++     G QLH   +   L S + ++N+I+ 
Sbjct: 343 AFKLFLQLQKNSFSFDEVSLSGALSAAAVIKGHSEGLQLHGLAIKSNLSSNICVANAILD 402

Query: 295 MYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSI 354
           MY KCG L  +  +F+++  +  VSW AII+   QN    + L+ F  M + K +  D  
Sbjct: 403 MYGKCGALVEASGLFDEMEIRDPVSWNAIITACEQNESEGKTLSHFGAMLRSKMEP-DEF 461

Query: 355 TLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA---YIVF 411
           T  S+L A     A    +++HG   ++G      V + L+  YSKCG ++ A   +   
Sbjct: 462 TYGSVLKACAGQRAFSNGMEVHGRIIKSGMGLKMFVGSALVDMYSKCGMMEEAEKIHYRL 521

Query: 412 EEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLT 471
           EE    + +VSWN II G+ +    E +   +  M E G  PD+ TY ++L+ C +    
Sbjct: 522 EE----QTMVSWNAIISGFSLQKKSEDSQRFFSHMLEMGVEPDNFTYATVLDTCANLATV 577

Query: 472 NDGLVIFNQMIEENKVKPSQEHY--GCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRAL 529
             G  I  QMI   K++   + Y    +VD+ ++ G + D S L  +         W A+
Sbjct: 578 GLGKQIHAQMI---KLELLSDVYITSTLVDMYSKCGNMHD-SLLMFRKAPKRDSVTWNAM 633

Query: 530 LSGCVLH 536
           + G   H
Sbjct: 634 ICGFAYH 640



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 126/495 (25%), Positives = 242/495 (48%), Gaps = 23/495 (4%)

Query: 57  KAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES------------ 104
           +A +HM+LSG  P  F    ++        LE A  +   M +  + S            
Sbjct: 45  EAHAHMILSGFTPTVFVTNCLIQMYVKCCALEYAYKVFEEMPQRDIVSWNTMVFGCAGAG 104

Query: 105 --DLFEGLKN--PY---LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
             +L + + N  P+   +VS N++++G++ N   Q+++ +F   R  G++ +  T+   +
Sbjct: 105 RMELAQAVFNSMPHHGDVVSWNSLISGYLQNGDIQKSIAVFLKMRDLGVMFDHTTLAVSL 164

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
           + C  L  + L   IHG+ +++G   DV   ++++DMY+    L+ ++ +F E+  K+ I
Sbjct: 165 KICSLLEDQVLGIQIHGIAVQMGFDYDVVTGSALVDMYAKCNSLEDSLDVFSELPDKNWI 224

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           SW+  +   V  +     LK+F+EM++  I        ++    A L   + G QLH   
Sbjct: 225 SWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTYASVFRSCAGLSASRLGTQLHCHA 284

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
           +     S++ +  + + MY+KC ++  +  +F+ + + +L S+ A+I GY +N    +A 
Sbjct: 285 LKTDFGSDVIVGTATLDMYAKCDNMSDAYKLFSLLPDHNLQSYNAMIIGYARNEQGFQAF 344

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
             F+++ Q+ + S D ++L   L+A+  +      LQLHG+A ++       V N ++  
Sbjct: 345 KLFLQL-QKNSFSFDEVSLSGALSAAAVIKGHSEGLQLHGLAIKSNLSSNICVANAILDM 403

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           Y KCG +  A  +F+EM  +RD VSWN II     N      L+ +  M  +   PD  T
Sbjct: 404 YGKCGALVEASGLFDEME-IRDPVSWNAIITACEQNESEGKTLSHFGAMLRSKMEPDEFT 462

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL 517
           Y S+L AC      ++G+ +  ++I+   +         +VD+ ++ G + +A  +  +L
Sbjct: 463 YGSVLKACAGQRAFSNGMEVHGRIIKSG-MGLKMFVGSALVDMYSKCGMMEEAEKIHYRL 521

Query: 518 LEGMGPNIWRALLSG 532
            E    + W A++SG
Sbjct: 522 EEQTMVS-WNAIISG 535



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 128/508 (25%), Positives = 232/508 (45%), Gaps = 38/508 (7%)

Query: 12  LSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNS 71
           L  Y K   + +A  LF  +P+ N+ S++ +I GY+ N    ++ K F  +  +    + 
Sbjct: 300 LDMYAKCDNMSDAYKLFSLLPDHNLQSYNAMIIGYARNEQGFQAFKLFLQLQKNSFSFDE 359

Query: 72  FTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFEG 109
            ++ G L AAA ++       +HGL +K  L S+                      LF+ 
Sbjct: 360 VSLSGALSAAAVIKGHSEGLQLHGLAIKSNLSSNICVANAILDMYGKCGALVEASGLFDE 419

Query: 110 LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALC 169
           ++    VS NAI+     N+   + +  F     S + P+  T  +V++ C   G RA  
Sbjct: 420 MEIRDPVSWNAIITACEQNESEGKTLSHFGAMLRSKMEPDEFTYGSVLKACA--GQRAFS 477

Query: 170 E--LIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
               +HG  IK G+ L + V ++++DMYS    ++ A +I   +E + ++SW  ++  F 
Sbjct: 478 NGMEVHGRIIKSGMGLKMFVGSALVDMYSKCGMMEEAEKIHYRLEEQTMVSWNAIISGFS 537

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
             + + D+ + F  M +  +  D      ++   A L  +  GKQ+HAQ++   L S++ 
Sbjct: 538 LQKKSEDSQRFFSHMLEMGVEPDNFTYATVLDTCANLATVGLGKQIHAQMIKLELLSDVY 597

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
           ++++++ MYSKCG++  S  +F +  ++  V+W A+I G+  +G   EAL  F  M  E 
Sbjct: 598 ITSTLVDMYSKCGNMHDSLLMFRKAPKRDSVTWNAMICGFAYHGLGEEALELFEHMLHEN 657

Query: 348 TDSVDSITLVSILTASGELAALEICL----QLHGI-AFEAGFPRYRSVQNCLISSYSKCG 402
               +  T VS+L A   +   +  L    ++  I A E     Y    +C++    + G
Sbjct: 658 IKP-NHATFVSVLRACSHVGNAKKGLFYFQKMASIYALEPQLEHY----SCMVDILGRSG 712

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
            V+ A  + ++M F  D + W T++    + G+ E A      + +  +  DSS Y  + 
Sbjct: 713 QVEEALRLIQDMPFEADAIIWRTLLSICKIQGNVEVAEKAASSLLKL-DPEDSSAYTLLS 771

Query: 463 NACGHAGLTNDGLVIFNQMIEEN-KVKP 489
           N    AG+      I   M   N K +P
Sbjct: 772 NIYADAGMWQQVSKIRQTMRSHNLKKEP 799



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 104/398 (26%), Positives = 177/398 (44%), Gaps = 46/398 (11%)

Query: 173 HGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM--------- 223
           H   I  G    V V N ++ MY     L+ A ++F EM  +D++SW  M+         
Sbjct: 47  HAHMILSGFTPTVFVTNCLIQMYVKCCALEYAYKVFEEMPQRDIVSWNTMVFGCAGAGRM 106

Query: 224 ----GLFVDFEYAGD-------------------ALKIFREMRKSRIICDTVALLNLISV 260
                +F    + GD                   ++ +F +MR   ++ D   L   + +
Sbjct: 107 ELAQAVFNSMPHHGDVVSWNSLISGYLQNGDIQKSIAVFLKMRDLGVMFDHTTLAVSLKI 166

Query: 261 NAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSW 320
            ++L D   G Q+H   V  G   ++   ++++ MY+KC  L+ S  VF+++ +K+ +SW
Sbjct: 167 CSLLEDQVLGIQIHGIAVQMGFDYDVVTGSALVDMYAKCNSLEDSLDVFSELPDKNWISW 226

Query: 321 TAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAF 380
           +A I+G VQN      L  F +M Q K   V   T  S+  +   L+A  +  QLH  A 
Sbjct: 227 SAAIAGCVQNDQLLRGLKLFKEM-QRKGIGVSQSTYASVFRSCAGLSASRLGTQLHCHAL 285

Query: 381 EAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETAL 440
           +  F     V    +  Y+KC N+  AY +F  +    ++ S+N +I GY  N  G  A 
Sbjct: 286 KTDFGSDVIVGTATLDMYAKCDNMSDAYKLFSLLPD-HNLQSYNAMIIGYARNEQGFQAF 344

Query: 441 ALYHKMTETGEVPDSSTYLSILNAC----GHA-GLTNDGLVIFNQMIEENKVKPSQEHYG 495
            L+ ++ +     D  +    L+A     GH+ GL   GL I + +     V  +     
Sbjct: 345 KLFLQLQKNSFSFDEVSLSGALSAAAVIKGHSEGLQLHGLAIKSNLSSNICVANA----- 399

Query: 496 CVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGC 533
            ++D+  + G L +ASGL  + +E   P  W A+++ C
Sbjct: 400 -ILDMYGKCGALVEASGLFDE-MEIRDPVSWNAIITAC 435



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 110/237 (46%), Gaps = 36/237 (15%)

Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSL--------- 317
           LK GK+ HA ++L G    + ++N +I MY KC  L+ +  VF ++ ++ +         
Sbjct: 40  LKPGKEAHAHMILSGFTPTVFVTNCLIQMYVKCCALEYAYKVFEEMPQRDIVSWNTMVFG 99

Query: 318 -----------------------VSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSI 354
                                  VSW ++ISGY+QNG  ++++  F+KMR       D  
Sbjct: 100 CAGAGRMELAQAVFNSMPHHGDVVSWNSLISGYLQNGDIQKSIAVFLKMRDLGV-MFDHT 158

Query: 355 TLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM 414
           TL   L     L    + +Q+HGIA + GF       + L+  Y+KC +++ +  VF E+
Sbjct: 159 TLAVSLKICSLLEDQVLGIQIHGIAVQMGFDYDVVTGSALVDMYAKCNSLEDSLDVFSEL 218

Query: 415 GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLT 471
              ++ +SW+  I G   N      L L+ +M   G     STY S+  +C  AGL+
Sbjct: 219 PD-KNWISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTYASVFRSC--AGLS 272



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 54/106 (50%), Gaps = 1/106 (0%)

Query: 355 TLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM 414
           T   I        AL+   + H     +GF     V NCLI  Y KC  ++ AY VFEEM
Sbjct: 26  TFSHIFQECSNRRALKPGKEAHAHMILSGFTPTVFVTNCLIQMYVKCCALEYAYKVFEEM 85

Query: 415 GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
              RD+VSWNT+++G    G  E A A+++ M   G+V   ++ +S
Sbjct: 86  P-QRDIVSWNTMVFGCAGAGRMELAQAVFNSMPHHGDVVSWNSLIS 130


>gi|15229194|ref|NP_190540.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75183401|sp|Q9M2Y7.1|PP274_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49710
 gi|6723416|emb|CAB66909.1| putative protein [Arabidopsis thaliana]
 gi|332645058|gb|AEE78579.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 721

 Score =  228 bits (582), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 150/474 (31%), Positives = 232/474 (48%), Gaps = 23/474 (4%)

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINN 128
           PN F+   ++ A A    + +AR              LF+ +  P  VS N +++G+ + 
Sbjct: 72  PNVFSYNVIVKAYAKDSKIHIARQ-------------LFDEIPQPDTVSYNTLISGYADA 118

Query: 129 KLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVN 188
           +    A++LF   R  G   +  T+  +I  C       L + +H  ++  G     SVN
Sbjct: 119 RETFAAMVLFKRMRKLGFEVDGFTLSGLIAACC--DRVDLIKQLHCFSVSGGFDSYSSVN 176

Query: 189 NSVLDMYSCLMDLDAAIQIFREM-ECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRI 247
           N+ +  YS    L  A+ +F  M E +D +SW  M+  +   +    AL +++EM     
Sbjct: 177 NAFVTYYSKGGLLREAVSVFYGMDELRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGF 236

Query: 248 ICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLD---S 304
             D   L ++++    L  L  G+Q H +++  G      + + +I  YSKCG  D    
Sbjct: 237 KIDMFTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYD 296

Query: 305 SRSVFNQITEKSLVSWTAIISGYVQNG-CAREALNQFIKMRQEKTDSVDSITLVSILTAS 363
           S  VF +I    LV W  +ISGY  N   + EA+  F +M Q      D  + V + +A 
Sbjct: 297 SEKVFQEILSPDLVVWNTMISGYSMNEELSEEAVKSFRQM-QRIGHRPDDCSFVCVTSAC 355

Query: 364 GELAALEICLQLHGIAFEAGFPRYR-SVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVS 422
             L++   C Q+HG+A ++  P  R SV N LIS Y K GN+  A  VF+ M  L + VS
Sbjct: 356 SNLSSPSQCKQIHGLAIKSHIPSNRISVNNALISLYYKSGNLQDARWVFDRMPEL-NAVS 414

Query: 423 WNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMI 482
           +N +I GY  +GHG  AL LY +M ++G  P+  T++++L+AC H G  ++G   FN M 
Sbjct: 415 FNCMIKGYAQHGHGTEALLLYQRMLDSGIAPNKITFVAVLSACAHCGKVDEGQEYFNTMK 474

Query: 483 EENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
           E  K++P  EHY C++DLL RAG L +A      +    G   W ALL  C  H
Sbjct: 475 ETFKIEPEAEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALLGACRKH 528



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 108/459 (23%), Positives = 209/459 (45%), Gaps = 40/459 (8%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P +  YN   ++  Y K  KI  A  LFDEIP+ + VS++ +I GY+       +M  F 
Sbjct: 72  PNVFSYNV--IVKAYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFK 129

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYL----- 115
            M   G   + FT+ G++  AA    ++L + +H   V  G +S  +  + N ++     
Sbjct: 130 RMRKLGFEVDGFTLSGLI--AACCDRVDLIKQLHCFSVSGGFDS--YSSVNNAFVTYYSK 185

Query: 116 --------------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLT 155
                               VS N+++  +  +K   +A+ L+      G   +  T+ +
Sbjct: 186 GGLLREAVSVFYGMDELRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLAS 245

Query: 156 VIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDA---AIQIFREME 212
           V+    +L         HG  IK G   +  V + ++D YS     D    + ++F+E+ 
Sbjct: 246 VLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEIL 305

Query: 213 CKDVISWTRMM-GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGK 271
             D++ W  M+ G  ++ E + +A+K FR+M++     D  + + + S  + L    + K
Sbjct: 306 SPDLVVWNTMISGYSMNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQCK 365

Query: 272 QLHAQVVLGGLQS-ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
           Q+H   +   + S  + ++N++I++Y K G+L  +R VF+++ E + VS+  +I GY Q+
Sbjct: 366 QIHGLAIKSHIPSNRISVNNALISLYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQH 425

Query: 331 GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV 390
           G   EAL  + +M      + + IT V++L+A      ++   +      E  F      
Sbjct: 426 GHGTEALLLYQRMLDSGI-APNKITFVAVLSACAHCGKVDEGQEYFNTMKET-FKIEPEA 483

Query: 391 QN--CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
           ++  C+I    + G ++ A    + M +    V+W  ++
Sbjct: 484 EHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALL 522



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 147/334 (44%), Gaps = 34/334 (10%)

Query: 266 DLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIIS 325
           DL  GK LHA  V   + S   LSN  + +YSKCG L  +R+ F    E ++ S+  I+ 
Sbjct: 23  DLFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGRLSYARAAFYSTEEPNVFSYNVIVK 82

Query: 326 GYVQNGCAREALNQFIKMRQEKTDSVDSI---------TLVSIL---------------T 361
            Y ++     A   F ++ Q  T S +++         T  +++               T
Sbjct: 83  AYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRMRKLGFEVDGFT 142

Query: 362 ASGELAA----LEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFL 417
            SG +AA    +++  QLH  +   GF  Y SV N  ++ YSK G +  A  VF  M  L
Sbjct: 143 LSGLIAACCDRVDLIKQLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDEL 202

Query: 418 RDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVI 477
           RD VSWN++I  YG +  G  ALALY +M   G   D  T  S+LNA         G   
Sbjct: 203 RDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQF 262

Query: 478 FNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN--IWRALLSGCVL 535
             ++I+    + S    G ++D  ++ G             E + P+  +W  ++SG   
Sbjct: 263 HGKLIKAGFHQNSHVGSG-LIDFYSKCGGCDGMYDSEKVFQEILSPDLVVWNTMISG--Y 319

Query: 536 HVGRFQDAEALRSGSQKKGIIKIP-GISFLNSTS 568
            +      EA++S  Q + I   P   SF+  TS
Sbjct: 320 SMNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTS 353


>gi|297804224|ref|XP_002869996.1| putative protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315832|gb|EFH46255.1| putative protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1251

 Score =  228 bits (582), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 156/503 (31%), Positives = 246/503 (48%), Gaps = 27/503 (5%)

Query: 59   FSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKN-PYLVS 117
            F  M   G  PN+FT   V  A A L  +     +H  ++K    SD+F G       V 
Sbjct: 636  FREMKRGGFEPNNFTFPFVAKACARLAYIGYCEMVHTHLIKSPFWSDVFVGTATVDMFVK 695

Query: 118  C---------------------NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTV 156
            C                     NA+++GF  +    +   LF   R   + P++VT++T+
Sbjct: 696  CDSLDYAAKVFERMPVRDATTWNAMLSGFCQSGHTDKVFSLFREMRLDEIPPDSVTVMTL 755

Query: 157  IRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKD- 215
            I+      S  L +++H   I+LG+ L  +V+N+ +  Y    DLD+A  +F  ++  D 
Sbjct: 756  IQSASFEKSLKLLKVMHAFGIRLGVDLQATVSNTWISAYGKCGDLDSAKLVFEAIDRGDR 815

Query: 216  -VISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
             V+SW  +   F  F  A DA   +R M +     D    +NL +       L +G+ +H
Sbjct: 816  TVVSWNSVFKAFAVFGEAFDAFGHYRLMLRDEFKPDLSTFINLAASCQNPQTLTQGRLIH 875

Query: 275  AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
            +  +  G   ++   N+ I+MYSK GD  S+R +F+ +  ++ VSWT +ISGY + G   
Sbjct: 876  SHAIHLGTDQDIEAINTFISMYSKSGDSCSARLLFDIMPSRTCVSWTVMISGYAEKGDMD 935

Query: 335  EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYR-SVQNC 393
            EAL  F  M +   +  D +TL+S+++  G+  +LEI   + G A   G  +    V N 
Sbjct: 936  EALALFHAMAKTGVNP-DLVTLLSLISGCGKFGSLEIGKWIDGRADMYGCKKDNVMVCNA 994

Query: 394  LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
            LI  YSKCG++D A  +F+     + +V+W T+I GY +NG    A+ L+ KM +    P
Sbjct: 995  LIDMYSKCGSIDEARDIFDNTS-EKTMVTWTTMIAGYALNGIFLEAMELFSKMIDLDYKP 1053

Query: 454  DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL 513
            +  T+L++L AC H+G    G   F+ M +   + P  +HY C+VDLL R G L +A  L
Sbjct: 1054 NHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNISPGLDHYSCMVDLLGRKGKLDEALEL 1113

Query: 514  AGKLLEGMGPNIWRALLSGCVLH 536
               +       IW ALLS C +H
Sbjct: 1114 IHNMSAKPDAGIWGALLSACKIH 1136



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 125/438 (28%), Positives = 198/438 (45%), Gaps = 28/438 (6%)

Query: 113  PYLVSCNAI---VAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALC 169
            P L S NA    V   +N     +++LLF   +  G  PN  T   V + C  L     C
Sbjct: 608  PGLSSVNAWNFQVREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLAYIGYC 667

Query: 170  ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDF 229
            E++H   IK     DV V  + +DM+     LD A ++F  M  +D  +W  M+  F   
Sbjct: 668  EMVHTHLIKSPFWSDVFVGTATVDMFVKCDSLDYAAKVFERMPVRDATTWNAMLSGFCQS 727

Query: 230  EYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLS 289
             +      +FREMR   I  D+V ++ LI   +    LK  K +HA  +  G+  +  +S
Sbjct: 728  GHTDKVFSLFREMRLDEIPPDSVTVMTLIQSASFEKSLKLLKVMHAFGIRLGVDLQATVS 787

Query: 290  NSIIAMYSKCGDLDSSRSVFNQIT--EKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
            N+ I+ Y KCGDLDS++ VF  I   ++++VSW ++   +   G A +A   +  M +++
Sbjct: 788  NTWISAYGKCGDLDSAKLVFEAIDRGDRTVVSWNSVFKAFAVFGEAFDAFGHYRLMLRDE 847

Query: 348  TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
                D  T +++  +      L     +H  A   G  +     N  IS YSK G+   A
Sbjct: 848  F-KPDLSTFINLAASCQNPQTLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSGDSCSA 906

Query: 408  YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
             ++F+ M   R  VSW  +I GY   G  + ALAL+H M +TG  PD  T LS+++ CG 
Sbjct: 907  RLLFDIMP-SRTCVSWTVMISGYAEKGDMDEALALFHAMAKTGVNPDLVTLLSLISGCGK 965

Query: 468  AGLTNDGLVIFNQMIEENKVKPSQEHYGC----------VVDLLARAGCLSDASGLAGKL 517
             G    G  I  +           + YGC          ++D+ ++ G + +A  +    
Sbjct: 966  FGSLEIGKWIDGRA----------DMYGCKKDNVMVCNALIDMYSKCGSIDEARDIFDNT 1015

Query: 518  LEGMGPNIWRALLSGCVL 535
             E      W  +++G  L
Sbjct: 1016 SEKTMV-TWTTMIAGYAL 1032



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 114/448 (25%), Positives = 210/448 (46%), Gaps = 45/448 (10%)

Query: 15   YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTM 74
            + K   +  A  +F+ +P ++  +W+ ++ G+  +G  +K    F  M L  + P+S T+
Sbjct: 693  FVKCDSLDYAAKVFERMPVRDATTWNAMLSGFCQSGHTDKVFSLFREMRLDEIPPDSVTV 752

Query: 75   VGVLVAAAGLQNLELARSIHGLMVKFGLE----------------SDL------FEGLK- 111
            + ++ +A+  ++L+L + +H   ++ G++                 DL      FE +  
Sbjct: 753  MTLIQSASFEKSLKLLKVMHAFGIRLGVDLQATVSNTWISAYGKCGDLDSAKLVFEAIDR 812

Query: 112  -NPYLVSCNAIVAGFINNKLFQQAVLLFNFFR---GSGLVPNAVTMLTVIRGCVALGSRA 167
             +  +VS N++   F    +F +A   F  +R        P+  T + +   C    +  
Sbjct: 813  GDRTVVSWNSVFKAFA---VFGEAFDAFGHYRLMLRDEFKPDLSTFINLAASCQNPQTLT 869

Query: 168  LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
               LIH   I LG   D+   N+ + MYS   D  +A  +F  M  +  +SWT M+  + 
Sbjct: 870  QGRLIHSHAIHLGTDQDIEAINTFISMYSKSGDSCSARLLFDIMPSRTCVSWTVMISGYA 929

Query: 228  DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE-L 286
            +     +AL +F  M K+ +  D V LL+LIS     G L+ GK +  +  + G + + +
Sbjct: 930  EKGDMDEALALFHAMAKTGVNPDLVTLLSLISGCGKFGSLEIGKWIDGRADMYGCKKDNV 989

Query: 287  RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
             + N++I MYSKCG +D +R +F+  +EK++V+WT +I+GY  NG   EA+  F KM  +
Sbjct: 990  MVCNALIDMYSKCGSIDEARDIFDNTSEKTMVTWTTMIAGYALNGIFLEAMELFSKM-ID 1048

Query: 347  KTDSVDSITLVSILTASGELAALE-------ICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
                 + IT +++L A     +LE       I  Q++ I+   G   Y    +C++    
Sbjct: 1049 LDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNIS--PGLDHY----SCMVDLLG 1102

Query: 400  KCGNVDLAYIVFEEMGFLRDVVSWNTII 427
            + G +D A  +   M    D   W  ++
Sbjct: 1103 RKGKLDEALELIHNMSAKPDAGIWGALL 1130



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 105/235 (44%), Gaps = 38/235 (16%)

Query: 11   LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
             +S Y KSG    A  LFD +P +  VSW+++I GY+  G  ++++  F  M  +G+ P+
Sbjct: 893  FISMYSKSGDSCSARLLFDIMPSRTCVSWTVMISGYAEKGDMDEALALFHAMAKTGVNPD 952

Query: 71   SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES-----------------------DLF 107
              T++ ++       +LE+ + I G    +G +                        D+F
Sbjct: 953  LVTLLSLISGCGKFGSLEIGKWIDGRADMYGCKKDNVMVCNALIDMYSKCGSIDEARDIF 1012

Query: 108  EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS-R 166
            +      +V+   ++AG+  N +F +A+ LF+        PN +T L V++ C   GS  
Sbjct: 1013 DNTSEKTMVTWTTMIAGYALNGIFLEAMELFSKMIDLDYKPNHITFLAVLQACAHSGSLE 1072

Query: 167  ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMD-------LDAAIQIFREMECK 214
               E  H +      + ++S     LD YSC++D       LD A+++   M  K
Sbjct: 1073 KGWEYFHIMK----QVYNISPG---LDHYSCMVDLLGRKGKLDEALELIHNMSAK 1120


>gi|414885414|tpg|DAA61428.1| TPA: hypothetical protein ZEAMMB73_429908 [Zea mays]
          Length = 817

 Score =  228 bits (582), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 169/563 (30%), Positives = 276/563 (49%), Gaps = 32/563 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + +++ Y K G++  A N F  +P +NVVSW+  I G+        +M   + M+
Sbjct: 209 DVFVGTSIVNMYVKCGQMGAAMNEFWRMPIRNVVSWTTAIAGFVQQEDPVNAMLLLTEML 268

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--LFEGLKNPY------- 114
            SG+  N +T   +L+A +    +  A  +HG+++K  L  D  + E L + Y       
Sbjct: 269 RSGVAINKYTATSILLACSQTSMIREANQVHGMIIKSELYLDHVVKEALISTYANAGAVQ 328

Query: 115 ----------LVSCNAIVAGFIN---NKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                      VS  +I + FI+       Q+++ L        L PN     +V     
Sbjct: 329 LCEKVFQEVDTVSNRSIWSAFISGVSRHSVQRSIQLLRRMLFQCLRPNDKCYASVFS--- 385

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
           ++ S  L   +H L IK G I  V V +++  MYS   DL  + ++F EM+ +D +SWT 
Sbjct: 386 SVDSSELGRQLHPLVIKDGFIHVVLVASALSTMYSRCNDLKDSYKVFEEMQEQDEVSWTS 445

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+  F    ++ +A ++ R M       + V+L  ++S   I   L +GK++H  V L  
Sbjct: 446 MIAGFATHGHSVEAFQVLRNMIAEGFTPNDVSLSAILSACNIPECLLKGKEVHGHV-LRA 504

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
                 +++ +++MYSKC DL ++R +F+    K  +  +++ISGY  NG + EAL+ F 
Sbjct: 505 YGRTTSINHCLVSMYSKCKDLQTARKLFDATPCKDQIMLSSMISGYATNGYSEEALSLF- 563

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           ++       +D     SI++    +A       LHG A + G     SV + L+  YSK 
Sbjct: 564 QLMLAAGFHIDRFLCSSIISICANMARPFCGKLLHGYASKVGILSDLSVSSSLVKLYSKS 623

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           GN+D +  VF+E+  + D+V+W  II GY  +G  + ALAL+  M   G  PD+   +S+
Sbjct: 624 GNLDDSRKVFDELD-VPDLVTWTAIIDGYAQHGSSQDALALFDLMIRCGVKPDTVILVSV 682

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L+ACG  GL  +G   FN M     V+P   HY C+VDLL R+G L +A      +    
Sbjct: 683 LSACGRNGLVEEGFKHFNSMRTVYGVEPVLHHYCCMVDLLGRSGRLVEAKSFIESMPVKP 742

Query: 522 GPNIWRALLSGCVLH----VGRF 540
              +W  LL+ C +H    +GRF
Sbjct: 743 NSMVWSTLLAACRVHDDVVLGRF 765



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 154/590 (26%), Positives = 270/590 (45%), Gaps = 42/590 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEK-NVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           D Y  S ++    K G++ +A   F++   + +VV W+  I G   NG H   ++ F  M
Sbjct: 106 DAYICSTMVDLLAKHGRLGDALRAFEDGEYRGSVVCWNTAISGAVRNGEHALGVEMFLDM 165

Query: 63  ML-SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPY----- 114
           +  S   PNSFT  GVL A A  + L + R++HG++++   E D+F G  + N Y     
Sbjct: 166 VRGSTCEPNSFTYSGVLSACAAGEELGVGRAVHGMVLRRDSEYDVFVGTSIVNMYVKCGQ 225

Query: 115 ---------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                          +VS    +AGF+  +    A+LL      SG+  N  T  +++  
Sbjct: 226 MGAAMNEFWRMPIRNVVSWTTAIAGFVQQEDPVNAMLLLTEMLRSGVAINKYTATSILLA 285

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C           +HG+ IK  L LD  V  +++  Y+    +    ++F+E+   D +S 
Sbjct: 286 CSQTSMIREANQVHGMIIKSELYLDHVVKEALISTYANAGAVQLCEKVFQEV---DTVSN 342

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
             +   F+         +  + +R+    C         SV + +   + G+QLH  V+ 
Sbjct: 343 RSIWSAFISGVSRHSVQRSIQLLRRMLFQCLRPNDKCYASVFSSVDSSELGRQLHPLVIK 402

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G    + +++++  MYS+C DL  S  VF ++ E+  VSWT++I+G+  +G + EA   
Sbjct: 403 DGFIHVVLVASALSTMYSRCNDLKDSYKVFEEMQEQDEVSWTSMIAGFATHGHSVEAFQV 462

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
              M  E     D ++L +IL+A      L    ++HG    A + R  S+ +CL+S YS
Sbjct: 463 LRNMIAEGFTPND-VSLSAILSACNIPECLLKGKEVHGHVLRA-YGRTTSINHCLVSMYS 520

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           KC ++  A  +F+     +D +  +++I GY  NG+ E AL+L+  M   G   D     
Sbjct: 521 KCKDLQTARKLFDATP-CKDQIMLSSMISGYATNGYSEEALSLFQLMLAAGFHIDRFLCS 579

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519
           SI++ C +      G ++ +    +  +         +V L +++G L D+  +  +L  
Sbjct: 580 SIISICANMARPFCGKLL-HGYASKVGILSDLSVSSSLVKLYSKSGNLDDSRKVFDELDV 638

Query: 520 GMGPNI--WRALLSGCVLHVGRFQDAEAL-----RSGSQKKGIIKIPGIS 562
              P++  W A++ G   H G  QDA AL     R G +   +I +  +S
Sbjct: 639 ---PDLVTWTAIIDGYAQH-GSSQDALALFDLMIRCGVKPDTVILVSVLS 684



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 128/522 (24%), Positives = 234/522 (44%), Gaps = 55/522 (10%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPE-KNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           +D      L+S Y  +G ++  E +F E+    N   WS  I G S +   ++S++    
Sbjct: 309 LDHVVKEALISTYANAGAVQLCEKVFQEVDTVSNRSIWSAFISGVSRHSV-QRSIQLLRR 367

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL------------------- 102
           M+   L PN      V    + + + EL R +H L++K G                    
Sbjct: 368 MLFQCLRPNDKCYASVF---SSVDSSELGRQLHPLVIKDGFIHVVLVASALSTMYSRCND 424

Query: 103 ---ESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                 +FE ++    VS  +++AGF  +    +A  +       G  PN V++  ++  
Sbjct: 425 LKDSYKVFEEMQEQDEVSWTSMIAGFATHGHSVEAFQVLRNMIAEGFTPNDVSLSAILSA 484

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C         + +HG  ++       S+N+ ++ MYS   DL  A ++F    CKD I  
Sbjct: 485 CNIPECLLKGKEVHGHVLR-AYGRTTSINHCLVSMYSKCKDLQTARKLFDATPCKDQIML 543

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           + M+  +    Y+ +AL +F+ M  +    D     ++IS+ A +     GK LH     
Sbjct: 544 SSMISGYATNGYSEEALSLFQLMLAAGFHIDRFLCSSIISICANMARPFCGKLLHGYASK 603

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G+ S+L +S+S++ +YSK G+LD SR VF+++    LV+WTAII GY Q+G +++AL  
Sbjct: 604 VGILSDLSVSSSLVKLYSKSGNLDDSRKVFDELDVPDLVTWTAIIDGYAQHGSSQDALAL 663

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN------- 392
           F  M +      D++ LVS+L+A G           +G+  E GF  + S++        
Sbjct: 664 FDLMIRCGVKP-DTVILVSVLSACGR----------NGLV-EEGFKHFNSMRTVYGVEPV 711

Query: 393 -----CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMT 447
                C++    + G +  A    E M    + + W+T++    V  H +  L  + +  
Sbjct: 712 LHHYCCMVDLLGRSGRLVEAKSFIESMPVKPNSMVWSTLLAACRV--HDDVVLGRFVENK 769

Query: 448 ETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKP 489
              E  DS  + ++ N   ++G   +G++   + +++ + +P
Sbjct: 770 IHEENCDSGCFATMSNIRANSG-DWEGVMEIRKSVKDVEKEP 810



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 120/273 (43%), Gaps = 13/273 (4%)

Query: 270 GKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDL-DSSRSVFNQITEKSLVSWTAIISGYV 328
            +QL+      GL  +  + ++++ + +K G L D+ R+  +     S+V W   ISG V
Sbjct: 91  AEQLYCAAWKDGLSRDAYICSTMVDLLAKHGRLGDALRAFEDGEYRGSVVCWNTAISGAV 150

Query: 329 QNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYR 388
           +NG     +  F+ M +  T   +S T   +L+A      L +   +HG+          
Sbjct: 151 RNGEHALGVEMFLDMVRGSTCEPNSFTYSGVLSACAAGEELGVGRAVHGMVLRRDSEYDV 210

Query: 389 SVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTE 448
            V   +++ Y KCG +  A   F  M  +R+VVSW T I G+        A+ L  +M  
Sbjct: 211 FVGTSIVNMYVKCGQMGAAMNEFWRMP-IRNVVSWTTAIAGFVQQEDPVNAMLLLTEMLR 269

Query: 449 TGEVPDSSTYLSILNACGHAGLTND-----GLVIFNQMIEENKVKPSQEHYGCVVDLLAR 503
           +G   +  T  SIL AC    +  +     G++I +++  ++ VK +      ++   A 
Sbjct: 270 SGVAINKYTATSILLACSQTSMIREANQVHGMIIKSELYLDHVVKEA------LISTYAN 323

Query: 504 AGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
           AG +     +  ++      +IW A +SG   H
Sbjct: 324 AGAVQLCEKVFQEVDTVSNRSIWSAFISGVSRH 356



 Score = 41.2 bits (95), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 46/223 (20%), Positives = 79/223 (35%), Gaps = 59/223 (26%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           PC D    S ++S Y                               + NG+ E+++  F 
Sbjct: 536 PCKDQIMLSSMISGY-------------------------------ATNGYSEEALSLFQ 564

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL------------------ 102
            M+ +G   + F    ++   A +      + +HG   K G+                  
Sbjct: 565 LMLAAGFHIDRFLCSSIISICANMARPFCGKLLHGYASKVGILSDLSVSSSLVKLYSKSG 624

Query: 103 ----ESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                  +F+ L  P LV+  AI+ G+  +   Q A+ LF+     G+ P+ V +++V+ 
Sbjct: 625 NLDDSRKVFDELDVPDLVTWTAIIDGYAQHGSSQDALALFDLMIRCGVKPDTVILVSVLS 684

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDL 201
            C   G   L E   G       +  V     VL  Y C++DL
Sbjct: 685 AC---GRNGLVE--EGFK-HFNSMRTVYGVEPVLHHYCCMVDL 721


>gi|224096616|ref|XP_002310672.1| predicted protein [Populus trichocarpa]
 gi|222853575|gb|EEE91122.1| predicted protein [Populus trichocarpa]
          Length = 551

 Score =  228 bits (582), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 142/499 (28%), Positives = 253/499 (50%), Gaps = 38/499 (7%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F+ +    +VS +A ++G+  N  +Q A+L+F     +G   N  T  +V+R C  L  
Sbjct: 54  VFDRMPERTVVSWSAQISGYSQNGCYQDALLVFLDMLRAGFKANQFTYGSVLRACTGLRC 113

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
                 I G   K     ++ V +++LD++S    ++ A  +F  ME +DV+SW  ++G 
Sbjct: 114 LQRGMQIQGCLEKSRFASNLIVQSALLDLHSKCGKMEDASYLFGMMEERDVVSWNAIIGA 173

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
           +    ++GD+ ++FR M +  +  D     +++  + +  D+ R  Q+H  ++  G  S 
Sbjct: 174 YAVQGFSGDSFRMFRSMMQEGMSPDLFTFGSVLKASGMASDVIRVCQIHQLIIQLGYGSH 233

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNG-CAREALNQFIKMR 344
           + LS S+I  Y+KC  L S+  ++  +  K ++S TA+++GY ++   + +AL+ F +++
Sbjct: 234 ISLSGSLIDAYAKCESLASAHCLYKSMPMKDMISCTALMTGYARDSNYSSKALDLFKEIQ 293

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYR-SVQNCLISSYSKCGN 403
           Q     +D + L S+      +++L +  Q+H +A +   P Y  ++ N LI  Y+K G 
Sbjct: 294 QMHM-KIDDVILCSMFNICANISSLSVGRQIHALALKCK-PTYDVAMGNALIDMYAKSGE 351

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           +  A   F EM   ++V+SW ++I GYG +GHG  A+AL+ KM   G  P+  T+LS+L 
Sbjct: 352 IKDANRAFNEME-EKNVISWTSLITGYGSHGHGHEAIALFKKMEYEGLKPNDITFLSLLF 410

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
           AC H GLT +G   FN MI +  + P  EH+ C+VDL AR G L +A  L  K+      
Sbjct: 411 ACNHCGLTGEGWECFNNMISKYNILPRAEHFSCMVDLFARGGLLEEAYNLINKMNIKPNA 470

Query: 524 NIWRALLSGCVLH---------------------------------VGRFQDAEALRSGS 550
           ++W A+L  C ++                                  G + +A  +R   
Sbjct: 471 SLWGAILGACYIYGNMPLAEEAAIHLFKMDPENSVNYVVLADIYAAAGSWDNAWKMRKLM 530

Query: 551 QKKGIIKIPGISFLNSTSR 569
           +++ + K PG SF+ S  +
Sbjct: 531 EERNLKKAPGYSFIPSIPQ 549



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 143/519 (27%), Positives = 244/519 (47%), Gaps = 51/519 (9%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+KL+  Y K G    A  +FD +PE+ VVSWS  I GYS NG ++ ++  F  M+ +G 
Sbjct: 35  STKLIIFYSKLGDTVSARKVFDRMPERTVVSWSAQISGYSQNGCYQDALLVFLDMLRAGF 94

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
             N FT   VL A  GL+ L+    I G + K    S+                      
Sbjct: 95  KANQFTYGSVLRACTGLRCLQRGMQIQGCLEKSRFASNLIVQSALLDLHSKCGKMEDASY 154

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC-VALG 164
           LF  ++   +VS NAI+  +        +  +F      G+ P+  T  +V++   +A  
Sbjct: 155 LFGMMEERDVVSWNAIIGAYAVQGFSGDSFRMFRSMMQEGMSPDLFTFGSVLKASGMASD 214

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM- 223
              +C+ IH L I+LG    +S++ S++D Y+    L +A  +++ M  KD+IS T +M 
Sbjct: 215 VIRVCQ-IHQLIIQLGYGSHISLSGSLIDAYAKCESLASAHCLYKSMPMKDMISCTALMT 273

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
           G   D  Y+  AL +F+E+++  +  D V L ++ ++ A +  L  G+Q+HA  +     
Sbjct: 274 GYARDSNYSSKALDLFKEIQQMHMKIDDVILCSMFNICANISSLSVGRQIHALALKCKPT 333

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
            ++ + N++I MY+K G++  +   FN++ EK+++SWT++I+GY  +G   EA+  F KM
Sbjct: 334 YDVAMGNALIDMYAKSGEIKDANRAFNEMEEKNVISWTSLITGYGSHGHGHEAIALFKKM 393

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG---------FPRYRSVQNCL 394
             E     D IT +S+L A            L G  +E            PR     +C+
Sbjct: 394 EYEGLKPND-ITFLSLLFACNHCG-------LTGEGWECFNNMISKYNILPRAEHF-SCM 444

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII---YGYGVNGHGETALALYHKMTETGE 451
           +  +++ G ++ AY +  +M    +   W  I+   Y YG     E A     KM     
Sbjct: 445 VDLFARGGLLEEAYNLINKMNIKPNASLWGAILGACYIYGNMPLAEEAAIHLFKMD---- 500

Query: 452 VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPS 490
            P++S    +L     A  + D      +++EE  +K +
Sbjct: 501 -PENSVNYVVLADIYAAAGSWDNAWKMRKLMEERNLKKA 538



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 100/411 (24%), Positives = 200/411 (48%), Gaps = 15/411 (3%)

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C+   ++    LIH   +  G   ++ ++  ++  YS L D  +A ++F  M  + V+SW
Sbjct: 7   CIETKAKKPGHLIHNQILTNGFASNIHLSTKLIIFYSKLGDTVSARKVFDRMPERTVVSW 66

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           +  +  +       DAL +F +M ++    +     +++     L  L+RG Q+   +  
Sbjct: 67  SAQISGYSQNGCYQDALLVFLDMLRAGFKANQFTYGSVLRACTGLRCLQRGMQIQGCLEK 126

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
               S L + ++++ ++SKCG ++ +  +F  + E+ +VSW AII  Y   G + ++   
Sbjct: 127 SRFASNLIVQSALLDLHSKCGKMEDASYLFGMMEERDVVSWNAIIGAYAVQGFSGDSFRM 186

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           F  M QE   S D  T  S+L ASG  + +    Q+H +  + G+  + S+   LI +Y+
Sbjct: 187 FRSMMQEGM-SPDLFTFGSVLKASGMASDVIRVCQIHQLIIQLGYGSHISLSGSLIDAYA 245

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNG-HGETALALYHKMTETGEVPDSSTY 458
           KC ++  A+ +++ M  ++D++S   ++ GY  +  +   AL L+ ++ +     D    
Sbjct: 246 KCESLASAHCLYKSMP-MKDMISCTALMTGYARDSNYSSKALDLFKEIQQMHMKIDDVIL 304

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQE--HYGCVVDLLARAGCLSDASGLAGK 516
            S+ N C +    + G  I    +   K KP+ +      ++D+ A++G + DA+    +
Sbjct: 305 CSMFNICANISSLSVGRQIHALAL---KCKPTYDVAMGNALIDMYAKSGEIKDANRAFNE 361

Query: 517 LLEGMGPNI--WRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFLN 565
           + E    N+  W +L++G   H G   +A AL    + +G +K   I+FL+
Sbjct: 362 MEE---KNVISWTSLITGYGSH-GHGHEAIALFKKMEYEG-LKPNDITFLS 407



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 101/221 (45%), Gaps = 22/221 (9%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  D    + L+  Y KSG+IK+A   F+E+ EKNV+SW+ +I GY  +G   +++  F 
Sbjct: 332 PTYDVAMGNALIDMYAKSGEIKDANRAFNEMEEKNVISWTSLITGYGSHGHGHEAIALFK 391

Query: 61  HMMLSGLLPNSFTMVGVLVAA--AGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSC 118
            M   GL PN  T + +L A    GL   E     + ++ K+ +       L      SC
Sbjct: 392 KMEYEGLKPNDITFLSLLFACNHCGLTG-EGWECFNNMISKYNI-------LPRAEHFSC 443

Query: 119 NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCE--LIHGLT 176
             +V  F    L ++A   +N      + PNA     ++  C   G+  L E   IH   
Sbjct: 444 --MVDLFARGGLLEEA---YNLINKMNIKPNASLWGAILGACYIYGNMPLAEEAAIHLFK 498

Query: 177 IKLGLILDVSVNNSVL-DMYSCLMDLDAAIQIFREMECKDV 216
           +      + SVN  VL D+Y+     D A ++ + ME +++
Sbjct: 499 MD----PENSVNYVVLADIYAAAGSWDNAWKMRKLMEERNL 535


>gi|224137486|ref|XP_002327138.1| predicted protein [Populus trichocarpa]
 gi|222835453|gb|EEE73888.1| predicted protein [Populus trichocarpa]
          Length = 601

 Score =  228 bits (582), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 156/528 (29%), Positives = 268/528 (50%), Gaps = 34/528 (6%)

Query: 33  EKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARS 92
           ++++VSW+ +I G S NG+   +++ F  ++  G  P   T+VG++ +    + +   RS
Sbjct: 3   DRDIVSWNALICGCSRNGYDVDALEIFVQLLREGFSPLQTTLVGLVPSCGRREFVFQGRS 62

Query: 93  IHGLMVKFGLESD----------------------LFEGLKNPYLVSCNAIVAGFINNKL 130
           IHG  +K G++ D                      LFE L++  +VS N ++  +  N  
Sbjct: 63  IHGFGIKTGIDLDSQVKNALTYMYAKSGDLEAAELLFEELEDKSVVSWNTMIGAYAGNGF 122

Query: 131 FQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNS 190
           F +++L+F       +  N VT+++++   ++       ELIH   IK GLI + SV  S
Sbjct: 123 FNESMLVFKRMVEQKVEVNPVTIMSLLPANISP------ELIHCYAIKTGLINNGSVVTS 176

Query: 191 VLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICD 250
           ++ +Y+     + A  ++     K+++S T ++  + +       ++ F  M++  +  D
Sbjct: 177 LVCLYAKCGSTELAELLYWSFPQKNLVSLTAIISSYAEKGNMDLVVECFSRMQQLDMKLD 236

Query: 251 TVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFN 310
           +VA+++++        +  G  LH   +  GL +   +SN +I+MY K  D++++ S+F 
Sbjct: 237 SVAMVSILHGITDPSHMSIGIALHGYALKNGLDTHNLVSNGLISMYFKFNDIEAAISLFY 296

Query: 311 QITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALE 370
           ++ EK L+SW ++ISG VQ G A +A+  F +M+     S D+IT+ S+LT   +L  L 
Sbjct: 297 EMPEKPLISWNSVISGCVQAGRASDAMKFFCQMKMFGL-SPDTITVASLLTGCSQLGYLR 355

Query: 371 ICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRD--VVSWNTIIY 428
           +  +LH             V   LI  Y+KCG++ LA  VF+    +R+  V +WNT+I 
Sbjct: 356 LGERLHNYILRNNLEVEDFVGTSLIDMYTKCGSILLAERVFKS---IREPCVATWNTMIS 412

Query: 429 GYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVK 488
           GY   G    AL  Y KM E G  PD  T+L +L AC H GL ++G   F  M EE  + 
Sbjct: 413 GYSWYGLEHNALNCYSKMREQGLEPDRITFLGVLAACIHGGLLHEGKKHFQIMTEEFGMV 472

Query: 489 PSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
           P+ +H  C+V LL RAG   +A      +       +W ALL+ C +H
Sbjct: 473 PNLQHCACMVGLLGRAGLFEEALLFIKNMESEPDSAVWGALLNACCIH 520



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 134/479 (27%), Positives = 222/479 (46%), Gaps = 51/479 (10%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D    + L   Y KSG ++ AE LF+E+ +K+VVSW+ +I  Y+ NGF  +SM  F  M
Sbjct: 74  LDSQVKNALTYMYAKSGDLEAAELLFEELEDKSVVSWNTMIGAYAGNGFFNESMLVFKRM 133

Query: 63  MLSGLLPNSFTMVGVLVA------------AAGL-QNLELARSIHGLMVKFG---LESDL 106
           +   +  N  T++ +L A              GL  N  +  S+  L  K G   L   L
Sbjct: 134 VEQKVEVNPVTIMSLLPANISPELIHCYAIKTGLINNGSVVTSLVCLYAKCGSTELAELL 193

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           +       LVS  AI++ +         V  F+  +   +  ++V M++++ G       
Sbjct: 194 YWSFPQKNLVSLTAIISSYAEKGNMDLVVECFSRMQQLDMKLDSVAMVSILHGITDPSHM 253

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
           ++   +HG  +K GL     V+N ++ MY    D++AAI +F EM  K +ISW  ++   
Sbjct: 254 SIGIALHGYALKNGLDTHNLVSNGLISMYFKFNDIEAAISLFYEMPEKPLISWNSVISGC 313

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
           V    A DA+K F +M+   +  DT+ + +L++  + LG L+ G++LH  ++   L+ E 
Sbjct: 314 VQAGRASDAMKFFCQMKMFGLSPDTITVASLLTGCSQLGYLRLGERLHNYILRNNLEVED 373

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            +  S+I MY+KCG +  +  VF  I E  + +W  +ISGY   G    ALN + KMR++
Sbjct: 374 FVGTSLIDMYTKCGSILLAERVFKSIREPCVATWNTMISGYSWYGLEHNALNCYSKMREQ 433

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
             +  D IT + +L A            +HG     G   ++                  
Sbjct: 434 GLEP-DRITFLGVLAAC-----------IHGGLLHEGKKHFQ------------------ 463

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
             I+ EE G + ++     ++   G  G  E AL     M      PDS+ + ++LNAC
Sbjct: 464 --IMTEEFGMVPNLQHCACMVGLLGRAGLFEEALLFIKNMESE---PDSAVWGALLNAC 517


>gi|218191332|gb|EEC73759.1| hypothetical protein OsI_08419 [Oryza sativa Indica Group]
          Length = 725

 Score =  228 bits (582), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 166/580 (28%), Positives = 272/580 (46%), Gaps = 31/580 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYS--INGFHEKSMKAFSH 61
           D +  S L+    K  ++  ++ +F EI +K+VV+++ +I GYS  ++     +      
Sbjct: 63  DKFVGSSLIVLSSKLHRMDGSQGVFKEIIDKDVVAYTSMITGYSEIVDSVAWNAFDIAID 122

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIH--------------------GLMVKFG 101
           M+   L  N  TM+ +L  A  L  L+  +S+H                     L  + G
Sbjct: 123 MLQGNLEVNRVTMISLLQIAGNLGALKEGKSLHCYSIRRAIVVSDYILETCIVNLYTRCG 182

Query: 102 LESDLFEGLKNP--YLVSCNAIVAGFIN-NKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                   L+N      S NA+++G     + F     L        + P++VT   VI 
Sbjct: 183 AYQSAVATLQNSKGTAASWNAMLSGLTRAGQSFDAIHYLSVMLHEHKITPDSVTFANVIS 242

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
            CV +        IH   I+  + LDV +  +++ +YS    +  +  +F ++  KD +S
Sbjct: 243 ACVEVCYFGYAASIHTYLIRRYIPLDVVLATALVKVYSKCKKITISRHLFNQLIVKDAVS 302

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           +  MM  ++    A +A  +   M    I+ D   +L+L++  A   DL RG+ +H   +
Sbjct: 303 YNAMMYGYLHNGMANEATSLLNYMMAEGIVPDFATVLSLLAAFADQRDLVRGRWIHGFAI 362

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
             G  S+  + N I+ MYS CG    +R +F+ + +KSLVSWTA++ G +  G   E + 
Sbjct: 363 RHGFCSDGDVENHILYMYSVCGKPAVARVIFDLLEQKSLVSWTAMMKGCLPYGHGDEVV- 421

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
           Q   + Q+  +  DS++LV+ + A  EL  L    Q+H   + +   + +   N LIS+Y
Sbjct: 422 QLFHLMQKHGEKPDSMSLVTAVQAVSELGHLNGLKQIHCFVYRSLLEKDKITANSLISAY 481

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
           +KCG +DL+  +F  + + R++ +WN II  Y ++G     L ++ +M E    PD  T+
Sbjct: 482 AKCGRLDLSVGLFFSLEY-RNLDTWNAIISAYAMHGFYINMLEMFKQMEEENIQPDELTF 540

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
            ++L AC HAGL  DG  +FN M     V P +EHYGC+VDLL RAG L D         
Sbjct: 541 STVLTACSHAGLVKDGWRMFNSMTSVYSVLPQEEHYGCMVDLLGRAGHLEDGYKFIKLST 600

Query: 519 EGMGPNIWRALLSGCVLH----VGRFQDAEALRSGSQKKG 554
                 I+  L+S C  H    +      E L  G QK G
Sbjct: 601 LKDKSTIFCVLISACRTHRNTQLALAISKELLEHGPQKPG 640



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 121/518 (23%), Positives = 241/518 (46%), Gaps = 41/518 (7%)

Query: 50  GFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG 109
           G+ E+ +  +  + L  +  +  T+  VL +   L+NL L + +H   +KFGL  D F G
Sbjct: 8   GYPEEVIILYKRLKLHQIGLDGKTITFVLKSCTELENLYLGKGMHVDSLKFGLSGDKFVG 67

Query: 110 ----------------------LKNPYLVSCNAIVAGF---INNKLFQQAVLLFNFFRGS 144
                                 + +  +V+  +++ G+   +++  +    +  +  +G+
Sbjct: 68  SSLIVLSSKLHRMDGSQGVFKEIIDKDVVAYTSMITGYSEIVDSVAWNAFDIAIDMLQGN 127

Query: 145 GLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLIL-DVSVNNSVLDMYSCLMDLDA 203
            L  N VTM+++++    LG+    + +H  +I+  +++ D  +   ++++Y+      +
Sbjct: 128 -LEVNRVTMISLLQIAGNLGALKEGKSLHCYSIRRAIVVSDYILETCIVNLYTRCGAYQS 186

Query: 204 AIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREM-RKSRIICDTVALLNLISVNA 262
           A+   +  +     SW  M+        + DA+     M  + +I  D+V   N+IS   
Sbjct: 187 AVATLQNSK-GTAASWNAMLSGLTRAGQSFDAIHYLSVMLHEHKITPDSVTFANVISACV 245

Query: 263 ILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTA 322
            +        +H  ++   +  ++ L+ +++ +YSKC  +  SR +FNQ+  K  VS+ A
Sbjct: 246 EVCYFGYAASIHTYLIRRYIPLDVVLATALVKVYSKCKKITISRHLFNQLIVKDAVSYNA 305

Query: 323 IISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEA 382
           ++ GY+ NG A EA +    M  E     D  T++S+L A  +   L     +HG A   
Sbjct: 306 MMYGYLHNGMANEATSLLNYMMAEGIVP-DFATVLSLLAAFADQRDLVRGRWIHGFAIRH 364

Query: 383 GFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALAL 442
           GF     V+N ++  YS CG   +A ++F+ +   + +VSW  ++ G    GHG+  + L
Sbjct: 365 GFCSDGDVENHILYMYSVCGKPAVARVIFDLLE-QKSLVSWTAMMKGCLPYGHGDEVVQL 423

Query: 443 YHKMTETGEVPDSSTYLSILNAC---GH-AGLTNDGLVIFNQMIEENKVKPSQEHYGCVV 498
           +H M + GE PDS + ++ + A    GH  GL      ++  ++E++K+  +      ++
Sbjct: 424 FHLMQKHGEKPDSMSLVTAVQAVSELGHLNGLKQIHCFVYRSLLEKDKITANS-----LI 478

Query: 499 DLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
              A+ G L  + GL    LE    + W A++S   +H
Sbjct: 479 SAYAKCGRLDLSVGLFFS-LEYRNLDTWNAIISAYAMH 515



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/317 (22%), Positives = 150/317 (47%), Gaps = 37/317 (11%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D   ++ L+  Y K  KI  + +LF+++  K+ VS++ +++GY  NG   ++    ++M
Sbjct: 267 LDVVLATALVKVYSKCKKITISRHLFNQLIVKDAVSYNAMMYGYLHNGMANEATSLLNYM 326

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
           M  G++P+  T++ +L A A  ++L   R IHG  ++ G  SD                 
Sbjct: 327 MAEGIVPDFATVLSLLAAFADQRDLVRGRWIHGFAIRHGFCSDGDVENHILYMYSVCGKP 386

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +F+ L+   LVS  A++ G +      + V LF+  +  G  P++++++T ++  
Sbjct: 387 AVARVIFDLLEQKSLVSWTAMMKGCLPYGHGDEVVQLFHLMQKHGEKPDSMSLVTAVQAV 446

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             LG     + IH    +  L  D    NS++  Y+    LD ++ +F  +E +++ +W 
Sbjct: 447 SELGHLNGLKQIHCFVYRSLLEKDKITANSLISAYAKCGRLDLSVGLFFSLEYRNLDTWN 506

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++  +    +  + L++F++M +  I  D +    +++  +  G +K G          
Sbjct: 507 AIISAYAMHGFYINMLEMFKQMEEENIQPDELTFSTVLTACSHAGLVKDG---------- 556

Query: 281 GLQSELRLSNSIIAMYS 297
                 R+ NS+ ++YS
Sbjct: 557 -----WRMFNSMTSVYS 568



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 79/185 (42%), Gaps = 22/185 (11%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C D    + +L  Y   GK   A  +FD + +K++VSW+ ++ G    G  ++ ++ F  
Sbjct: 367 CSDGDVENHILYMYSVCGKPAVARVIFDLLEQKSLVSWTAMMKGCLPYGHGDEVVQLFHL 426

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------- 105
           M   G  P+S ++V  + A + L +L   + IH  + +  LE D                
Sbjct: 427 MQKHGEKPDSMSLVTAVQAVSELGHLNGLKQIHCFVYRSLLEKDKITANSLISAYAKCGR 486

Query: 106 ------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                 LF  L+   L + NAI++ +  +  +   + +F       + P+ +T  TV+  
Sbjct: 487 LDLSVGLFFSLEYRNLDTWNAIISAYAMHGFYINMLEMFKQMEEENIQPDELTFSTVLTA 546

Query: 160 CVALG 164
           C   G
Sbjct: 547 CSHAG 551


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  228 bits (582), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 154/562 (27%), Positives = 263/562 (46%), Gaps = 65/562 (11%)

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--------------------- 109
           +F    VL A   +   +L + IHG ++K GL+ D+F G                     
Sbjct: 94  NFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFD 153

Query: 110 -LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            +    +VS + ++     NK F  A+ L        + P+ V M++++       +  +
Sbjct: 154 KMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRM 213

Query: 169 CELIHGLTIKLG--LILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
            + +H   I+      + V    ++LDMY+    L  A Q+F  +  K V+SWT M+   
Sbjct: 214 GKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGC 273

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
           +      +  K+F  M++  I  + + +L+LI      G L+ GKQLHA ++  G    L
Sbjct: 274 IRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSL 333

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            L+ +++ MY KC D+ ++R++F+    + ++ WTA++S Y Q  C  +A N F +MR  
Sbjct: 334 ALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTS 393

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
                  +T+VS+L+      AL++   +H    +        +   L+  Y+KCG+++ 
Sbjct: 394 GVRPT-KVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINA 452

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           A  +F E    RD+  WN II G+ ++G+GE AL ++ +M   G  P+  T++ +L+AC 
Sbjct: 453 AGRLFIE-AISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACS 511

Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN-- 524
           HAGL  +G  +F +M+    + P  EHYGC+VDLL RAG L +A  +   +   + PN  
Sbjct: 512 HAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSM--PIKPNTI 569

Query: 525 IWRALLSGCVLH---------------------------------VGRFQDAEALRSGSQ 551
           +W AL++ C LH                                   R+ DA  +R   +
Sbjct: 570 VWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMK 629

Query: 552 KKGIIKIPGISFL--NSTSRDF 571
             G+ K PG S +  N T  +F
Sbjct: 630 TVGMKKEPGHSVIEVNGTVHEF 651



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 116/521 (22%), Positives = 235/521 (45%), Gaps = 45/521 (8%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L+  Y +   ++ A  +FD++ E++VVSWS +I   S N   + +++    M 
Sbjct: 128 DVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREMN 187

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK------------------------ 99
              + P+   MV ++   A   N+ + +++H  +++                        
Sbjct: 188 FMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGH 247

Query: 100 FGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
            GL   LF GL    +VS  A++AG I +   ++   LF   +   + PN +TML++I  
Sbjct: 248 LGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVE 307

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C   G+  L + +H   ++ G  + +++  +++DMY    D+  A  +F   + +DV+ W
Sbjct: 308 CGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQNRDVMIW 367

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           T M+  +        A  +F +MR S +    V +++L+S+ A+ G L  GK +H+ +  
Sbjct: 368 TAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDK 427

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
             ++ +  L+ +++ MY+KCGD++++  +F +   + +  W AII+G+  +G   EAL+ 
Sbjct: 428 ERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDI 487

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQL-----HGIAFEAGFPRYRSVQNCL 394
           F +M ++     D IT + +L A      +    +L     H          Y     C+
Sbjct: 488 FAEMERQGVKPND-ITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHY----GCM 542

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           +    + G +D A+ + + M    + + W  ++           A    HK  + GE+  
Sbjct: 543 VDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALV-----------AACRLHKNPQLGELAA 591

Query: 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYG 495
           +         CG+  L ++     N+  +   V+ + +  G
Sbjct: 592 TQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVG 632



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 46/80 (57%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D   ++ L+  Y K G I  A  LF E   +++  W+ +I G++++G+ E+++  F+ M
Sbjct: 432 VDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEM 491

Query: 63  MLSGLLPNSFTMVGVLVAAA 82
              G+ PN  T +G+L A +
Sbjct: 492 ERQGVKPNDITFIGLLHACS 511


>gi|326507410|dbj|BAK03098.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 698

 Score =  228 bits (581), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 172/624 (27%), Positives = 281/624 (45%), Gaps = 73/624 (11%)

Query: 5   PYNSSKLLSNY-FKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           P+N  +LL+ Y   S  +  A  LFDEIP  +  SW+ ++  +   G H  + +    M 
Sbjct: 36  PWN--QLLTAYSVSSPGLAAARRLFDEIPRLDAASWNSLLAAHVSIGAHPAACRLLRAMH 93

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
             GL  N+F +   L +AA +    L   +H L VK GL  +                  
Sbjct: 94  ERGLAANTFALGSALRSAAAMGCSALGTQLHSLAVKAGLADNVFSATALLHMYAKCGRTR 153

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVT---MLTVIR 158
               LF+G+     VS NA+VAG++ +     AV LF      G +P+  T   +LTV+ 
Sbjct: 154 DACRLFDGMPERNTVSWNALVAGYVESGKVAPAVQLFVEMEREGFLPDEATFAALLTVVN 213

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM-ECKDVI 217
                    L   +HG  +K G  L + V N+ +  YS    L  + +IF E+ +  D+I
Sbjct: 214 DSTCF----LMHQLHGKIVKYGSALGLIVLNAAITAYSQCGALANSRRIFDEIGDRSDLI 269

Query: 218 SWTRMMGLFVDFEYAGDALKIFREM-RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQ 276
           SW  M+G +       +A++ F  M R S +  D  +  ++IS  A   D   G  +H  
Sbjct: 270 SWNAMLGAYATHGMEHEAMRFFASMMRASGVQPDMYSFTSIISACAEHRD-HGGTVIHGL 328

Query: 277 VVLGGLQSELRLSNSIIAMYSKCGD---LDSSRSVFNQITEKSLVSWTAIISGYVQNGCA 333
           V   G +    + N++IAMY++  +   ++ +   F+ +  K  VSW ++++GY Q+G +
Sbjct: 329 VSKNGFEGVTHVCNALIAMYTRFSENCMMEDAYKCFDSLLLKDTVSWNSMLTGYSQHGLS 388

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC 393
            +AL +F +  Q +  + D     + L +  +LA L +  Q+HG+   +GF     V + 
Sbjct: 389 ADAL-RFFRCMQSENITTDEYAFSAALRSCSDLALLRLGRQIHGLVIRSGFASNNFVSSS 447

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           LI  YSK G +D A   FEE       V WN++++GY  +G  +   +L+++M E     
Sbjct: 448 LIFMYSKSGILDDAMKSFEEAD-KSSSVPWNSMMFGYAQHGKAQAVRSLFNQMLELKVPL 506

Query: 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL 513
           D  T++ ++ AC HAGL ++G  I N M     +    EHY C +DL  RAG L  A  L
Sbjct: 507 DHITFVGLITACSHAGLVDEGSEILNTMESRYGIPLRMEHYACGIDLYGRAGQLDKAKEL 566

Query: 514 AGKLLEGMGPNIWRALLSGCVLH---------------------------------VGRF 540
              +       +W  LL  C +H                                 +G +
Sbjct: 567 IDSMPFEPDAMVWMTLLGACRVHGNMELASDVASHLLEAEPRQHSTYVLLSNMYSGLGMW 626

Query: 541 QDAEALRSGSQKKGIIKIPGISFL 564
            D   ++   + KG+ K+PG S++
Sbjct: 627 SDRAIVQKEMKNKGLSKVPGWSWI 650


>gi|357131661|ref|XP_003567454.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19220,
           mitochondrial-like [Brachypodium distachyon]
          Length = 924

 Score =  228 bits (581), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 163/554 (29%), Positives = 280/554 (50%), Gaps = 34/554 (6%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ L++ YF+ G  ++AE +F  I +KN VSW+++I G   N    +++  F  M LS  
Sbjct: 312 ANSLITFYFEFGFPEDAEKVFMRIFKKNHVSWNVMIKGLMENEKAGEALAVFREM-LSEC 370

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVK---FGLESDLFEGLKNPY---------- 114
            P+  T+V V+++      L   ++IHG + +   F +ES L   L   Y          
Sbjct: 371 QPDFATLVAVILSCGDQGLLCEGKAIHGYITRKCLFHVESSLGNSLLGLYMKCDDAYTAN 430

Query: 115 ----------LVSCNAIVAGFI-NNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
                     L+S N +++G+  ++ L ++A  +F      GL     T+L VI  C   
Sbjct: 431 LLFRTMPIRDLISWNTMLSGYSRDDSLREEAQAMFRELLSEGLSCTMTTILAVIPSCSCP 490

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFRE-MECKDVISW-TR 221
                 + +H   +K G    VSV N+++ MY C  D   A  +    M   D+ISW T 
Sbjct: 491 EDLRFGKAVHSFVLKYGFASGVSVVNALMHMYICCGDSLVAFTLLGSIMPVSDIISWNTA 550

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRII-CDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
           ++G   +  + G AL+ F+ M  S  +  D++ L++++S    L     GK +H+  +  
Sbjct: 551 VVGCVQNGLHRG-ALEAFQFMHSSLPLNPDSITLVSVLSACGTLKLQSLGKSIHSMALKR 609

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
            L   LR+ N+++ MY +  D +S+  +F  + +++L SW  ++SG+ QN   R AL  +
Sbjct: 610 LLVFNLRVKNALLTMYFRFADTESAELIFYSLGDRNLCSWNCMVSGFAQNNDGRRALQFY 669

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            KM +   +    +  VSI+ A  +L  +     +HG   ++       +   L+  YSK
Sbjct: 670 QKMEKFVPNE---MCTVSIICACTQLRDVRHGKSIHGHVVKSDLQNNVFLSASLVDMYSK 726

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CG +D+A  VFE     + +  WN++I  +G +GHG  ++ L+  M  +G     ST+++
Sbjct: 727 CGRLDIAVRVFES-STEKSIACWNSMISAFGFHGHGLRSIELFCSMIHSGMKATRSTFIA 785

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
           +L+AC HAGLT++GL  +N M E+  + P+ EH+ C+VD+L RAG L +A      L + 
Sbjct: 786 LLSACSHAGLTDEGLKYYNLMSEKFGITPTPEHHVCIVDMLGRAGRLQEAHKFVESLPKS 845

Query: 521 MGPN-IWRALLSGC 533
              + +W ALLS C
Sbjct: 846 KEAHGVWGALLSAC 859



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 143/505 (28%), Positives = 234/505 (46%), Gaps = 36/505 (7%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+  Y K G   ++E +F  +P  +  SW+ V  G + NG  E S   F  M+   +  +
Sbjct: 211 LVDMYAKCGSFCDSEAVFWSMPCWDTASWNSVTGGSTFNGLSEVSACYFREMIRLAVQAD 270

Query: 71  SFTMVGVLVAAAGLQNL-ELARSIHGLMVKFGLESDLFEGLKNPYL-------------- 115
             T+  V+ A++  + L     S+HG +VK G E      + N  +              
Sbjct: 271 EVTLSSVISASSRAEGLFSFGESVHGCIVKLGYEDTAPCSVANSLITFYFEFGFPEDAEK 330

Query: 116 ----------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
                     VS N ++ G + N+   +A+ +F     S   P+  T++ VI  C   G 
Sbjct: 331 VFMRIFKKNHVSWNVMIKGLMENEKAGEALAVFREML-SECQPDFATLVAVILSCGDQG- 388

Query: 166 RALCE--LIHG-LTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
             LCE   IHG +T K    ++ S+ NS+L +Y    D   A  +FR M  +D+ISW  M
Sbjct: 389 -LLCEGKAIHGYITRKCLFHVESSLGNSLLGLYMKCDDAYTANLLFRTMPIRDLISWNTM 447

Query: 223 M-GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           + G   D     +A  +FRE+    + C    +L +I   +   DL+ GK +H+ V+  G
Sbjct: 448 LSGYSRDDSLREEAQAMFRELLSEGLSCTMTTILAVIPSCSCPEDLRFGKAVHSFVLKYG 507

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKS-LVSWTAIISGYVQNGCAREALNQF 340
             S + + N+++ MY  CGD   + ++   I   S ++SW   + G VQNG  R AL  F
Sbjct: 508 FASGVSVVNALMHMYICCGDSLVAFTLLGSIMPVSDIISWNTAVVGCVQNGLHRGALEAF 567

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
             M      + DSITLVS+L+A G L    +   +H +A +        V+N L++ Y +
Sbjct: 568 QFMHSSLPLNPDSITLVSVLSACGTLKLQSLGKSIHSMALKRLLVFNLRVKNALLTMYFR 627

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
             + + A ++F  +G  R++ SWN ++ G+  N  G  AL  Y KM +   VP+    +S
Sbjct: 628 FADTESAELIFYSLGD-RNLCSWNCMVSGFAQNNDGRRALQFYQKMEKF--VPNEMCTVS 684

Query: 461 ILNACGHAGLTNDGLVIFNQMIEEN 485
           I+ AC        G  I   +++ +
Sbjct: 685 IICACTQLRDVRHGKSIHGHVVKSD 709



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 97/317 (30%), Positives = 156/317 (49%), Gaps = 12/317 (3%)

Query: 170 ELIHGLTIKLGLILDVSVNNSVLDMYS-CL----MDLDAAIQIFREMECKDVISWTRMMG 224
           E +H   +K G +LD  V  S+L  Y+ C      D  AA+ +F E E  DVI W  ++G
Sbjct: 83  ESLHCAALKSGAVLDPPVRTSLLAAYARCPSGGDHDARAALVLFHEAEDPDVILWNAVIG 142

Query: 225 LFVDFEYAGDALKIFREMRKSR-IICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
                   GDA+ +FR M   R    D+  ++ ++S  +  G+L  G  LHA  V   L 
Sbjct: 143 ALTRACRLGDAVALFRRMAGVRGEAFDSTTVVVMLSGASRAGELDLGMALHAAAVKRRLD 202

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
           +++ L N+++ MY+KCG    S +VF  +      SW ++  G   NG +  +   F +M
Sbjct: 203 TDMNLWNALVDMYAKCGSFCDSEAVFWSMPCWDTASWNSVTGGSTFNGLSEVSACYFREM 262

Query: 344 RQEKTDSVDSITLVSILTASGELAAL-EICLQLHGIAFEAGFPRYR--SVQNCLISSYSK 400
            +    + D +TL S+++AS     L      +HG   + G+      SV N LI+ Y +
Sbjct: 263 IRLAVQA-DEVTLSSVISASSRAEGLFSFGESVHGCIVKLGYEDTAPCSVANSLITFYFE 321

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
            G  + A  VF  + F ++ VSWN +I G   N     ALA++ +M    + PD +T ++
Sbjct: 322 FGFPEDAEKVFMRI-FKKNHVSWNVMIKGLMENEKAGEALAVFREMLSECQ-PDFATLVA 379

Query: 461 ILNACGHAGLTNDGLVI 477
           ++ +CG  GL  +G  I
Sbjct: 380 VILSCGDQGLLCEGKAI 396



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 100/366 (27%), Positives = 177/366 (48%), Gaps = 9/366 (2%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRG-SGLVPNAVTMLTVIRGCVALG 164
           LF   ++P ++  NA++           AV LF    G  G   ++ T++ ++ G    G
Sbjct: 125 LFHEAEDPDVILWNAVIGALTRACRLGDAVALFRRMAGVRGEAFDSTTVVVMLSGASRAG 184

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
              L   +H   +K  L  D+++ N+++DMY+       +  +F  M C D  SW  + G
Sbjct: 185 ELDLGMALHAAAVKRRLDTDMNLWNALVDMYAKCGSFCDSEAVFWSMPCWDTASWNSVTG 244

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNA-ILGDLKRGKQLHAQVVLGGLQ 283
                  +  +   FREM +  +  D V L ++IS ++   G    G+ +H  +V  G +
Sbjct: 245 GSTFNGLSEVSACYFREMIRLAVQADEVTLSSVISASSRAEGLFSFGESVHGCIVKLGYE 304

Query: 284 --SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
             +   ++NS+I  Y + G  + +  VF +I +K+ VSW  +I G ++N  A EAL  F 
Sbjct: 305 DTAPCSVANSLITFYFEFGFPEDAEKVFMRIFKKNHVSWNVMIKGLMENEKAGEALAVFR 364

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHG-IAFEAGFPRYRSVQNCLISSYSK 400
           +M  E     D  TLV+++ + G+   L     +HG I  +  F    S+ N L+  Y K
Sbjct: 365 EMLSECQP--DFATLVAVILSCGDQGLLCEGKAIHGYITRKCLFHVESSLGNSLLGLYMK 422

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGH-GETALALYHKMTETGEVPDSSTYL 459
           C +   A ++F  M  +RD++SWNT++ GY  +    E A A++ ++   G     +T L
Sbjct: 423 CDDAYTANLLFRTMP-IRDLISWNTMLSGYSRDDSLREEAQAMFRELLSEGLSCTMTTIL 481

Query: 460 SILNAC 465
           +++ +C
Sbjct: 482 AVIPSC 487


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  228 bits (581), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 168/629 (26%), Positives = 283/629 (44%), Gaps = 119/629 (18%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           + + S+ L++ Y+K G +  A ++FD IP+ N+ SW+ ++  YS  G   +  + F+   
Sbjct: 39  ETFLSNNLITAYYKLGNLAYAHHVFDHIPQPNLFSWNTILSVYSKLGLLSQMQQIFN--- 95

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVA 123
              L+P                                      +G      VS N  ++
Sbjct: 96  ---LMP------------------------------------FRDG------VSWNLAIS 110

Query: 124 GFINNKLFQQAVLLFNF-FRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLI 182
           G+ N      AV ++    + + +  N +T  T++  C       L   I+G  +K G  
Sbjct: 111 GYANYGSCSDAVRVYKLMLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFG 170

Query: 183 LDVSVNNSVLDMYSCLMDLDAAIQIFREM----------------EC------------- 213
            DV V + ++DMY+ L  +  A + F EM                 C             
Sbjct: 171 SDVFVGSPLVDMYTKLGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGL 230

Query: 214 --KDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGK 271
             +D ISWT M+   +      +AL +FREMR +    D     ++++    L  L  GK
Sbjct: 231 KERDSISWTIMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGK 290

Query: 272 QLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNG 331
           Q+HA V+    +  + + ++++ MYSKC  + S+ +VF ++ +K+++SWTA++ GY QNG
Sbjct: 291 QIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNG 350

Query: 332 CAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ 391
            + EA+  F +M++   +  D  TL S++++   LA+LE   Q H  A  +G   + +V 
Sbjct: 351 FSEEAVKIFFEMQRNGVEP-DDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVS 409

Query: 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE 451
           N LI+ Y KCG+ + ++ +F EM  +RD VSW  ++ GY   G     + L+ +M   G 
Sbjct: 410 NALITLYGKCGSTENSHRLFTEMN-IRDEVSWTALLAGYAQFGKANETIGLFERMLAHGL 468

Query: 452 VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDAS 511
            PD  T++ +L+AC  AGL   GL  F  MI+E+ + P  +H  C++DLL RAG L +A 
Sbjct: 469 KPDGVTFIGVLSACSRAGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEAR 528

Query: 512 GLAGKLLEGMGPNI--WRALLSGCVLH--------------------------------- 536
                +     P++  W  LLS C +H                                 
Sbjct: 529 NFINNM--PCHPDVVGWATLLSSCRVHGDMEIGKWAADSLIALEPQNPASYVLLSSLYAS 586

Query: 537 VGRFQDAEALRSGSQKKGIIKIPGISFLN 565
            G++     LR G + K + K PG S++ 
Sbjct: 587 KGKWDKVAQLRRGMRDKRVRKEPGYSWIK 615



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 104/259 (40%), Gaps = 61/259 (23%)

Query: 269 RGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAI----- 323
           + K+LH  ++    Q E  LSN++I  Y K G+L  +  VF+ I + +L SW  I     
Sbjct: 23  QAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIPQPNLFSWNTILSVYS 82

Query: 324 --------------------------ISGYVQNGCAREALNQFIKMRQEKTDSVDSITLV 357
                                     ISGY   G   +A+  +  M ++   +++ IT  
Sbjct: 83  KLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLMLKDAAMNLNRITFS 142

Query: 358 SILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM--- 414
           ++L    +   +++  Q++G   + GF     V + L+  Y+K G +  A   F+EM   
Sbjct: 143 TMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMPER 202

Query: 415 ----------GFL-----------------RDVVSWNTIIYGYGVNGHGETALALYHKMT 447
                     G +                 RD +SW  +I G   NG    AL ++ +M 
Sbjct: 203 NVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREMR 262

Query: 448 ETGEVPDSSTYLSILNACG 466
             G   D  T+ S+L ACG
Sbjct: 263 LAGFAMDQFTFGSVLTACG 281


>gi|357481329|ref|XP_003610950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512285|gb|AES93908.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 831

 Score =  228 bits (581), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 165/624 (26%), Positives = 288/624 (46%), Gaps = 104/624 (16%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y S+ LL  Y K G  ++A  +F+ I E N V+++ ++ G S     ++ ++ F  M+  
Sbjct: 174 YVSNALLCMYTKCGLNEDAFRVFEGIVEPNEVTFTTMMGGLSQTNQVKEGLELFRLMLRK 233

Query: 66  GLLPNSFTMVGVLVAAA------------GLQNLELARSIHGLMVKFGLESDL------- 106
           G+  +S ++  +LV  A            GL      + IH L VK G E DL       
Sbjct: 234 GICVDSVSLSTILVICAKGVSFGVCDDSRGLSTNAQGKQIHTLAVKHGFERDLHLCNSLL 293

Query: 107 ---------------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAV 151
                          FE L    +VS N +++G+ N    ++A+  F   +  G  P+ V
Sbjct: 294 DMYAKTGDMDSAENVFENLDKHSVVSWNIMISGYGNRCDSEKALECFQRMQCCGYEPDDV 353

Query: 152 TMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM 211
           T + ++  CV  G                                   D+    QIF  M
Sbjct: 354 TYINMLTACVKSG-----------------------------------DVKVGRQIFDCM 378

Query: 212 ECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGK 271
               +ISW  ++  +      G+A+++FR+M+      D   L  ++S  A LG L+ GK
Sbjct: 379 SSPSLISWNAILSGYNQSADHGEAVELFRKMQFQWQNPDRTTLAIILSSCAELGLLEAGK 438

Query: 272 QLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNG 331
           Q+HA     G   ++ +++S+I +YSKCG ++ S+ VF++++E  +V W ++I+G+  N 
Sbjct: 439 QVHAVSQKLGFYDDVYVASSLINVYSKCGKMEVSKHVFSKLSELDVVCWNSMIAGFSINS 498

Query: 332 CAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ 391
             ++AL  F +MRQ      +  +  +I ++  +L++L    Q+H    + G+     V 
Sbjct: 499 LEQDALACFKRMRQFGFFPSE-FSFATIASSCAKLSSLFQGQQIHAQIIKDGYVDNVFVG 557

Query: 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE 451
           + L+  Y KCG+V  A   F+ M   +++V+WN +I+GY  NG+G  A++LY  M  +GE
Sbjct: 558 SSLVEMYCKCGDVGAARYYFDMMPG-KNIVTWNEMIHGYAHNGYGLEAVSLYKDMISSGE 616

Query: 452 VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDAS 511
            PD  T++++L AC H+ L ++G+ IF+ M+++ +V P  +HY C++D L R G  ++  
Sbjct: 617 KPDDITFVAVLTACSHSALVDEGVEIFSSMLQKFEVVPKLDHYTCIIDCLGRVGRFNEVE 676

Query: 512 GLAGKLLEGMGPNIWRALLSGCVLH---------------------------------VG 538
            +   +       +W  +LS C +H                                 +G
Sbjct: 677 VILDTMPYKDDTIVWEVVLSSCRVHANVSLAKRAAEELHRLNPRNSAPYVLLANMYSSMG 736

Query: 539 RFQDAEALRSGSQKKGIIKIPGIS 562
           R+ DA+ +R       I K PG S
Sbjct: 737 RWDDAQVVRDLMSDNQIHKDPGYS 760



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 125/486 (25%), Positives = 213/486 (43%), Gaps = 102/486 (20%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L+  Y K  +I  A ++FD+IP KN+ S++                       
Sbjct: 39  DTFLCNHLIDLYSKCNQITSAHHVFDKIPHKNIFSYN----------------------- 75

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVA 123
                        +L A     NL+ A               LF  +     VS N I+ 
Sbjct: 76  ------------AILSAFCKSNNLQYA-------------CRLFLQMPERNTVSLNTIIT 110

Query: 124 GFINNKLFQQAVLLFNFFR-GSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLI 182
             + N   +QA+  ++       + P+ +T  TV   C  L         HGL +K+G  
Sbjct: 111 TMVKNGYERQALDTYDLMMVYESVKPSHITFATVFSACGGLKDVNCGRRNHGLVLKVGFD 170

Query: 183 LDVSVNNSVLDMYS-CLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFRE 241
            ++ V+N++L MY+ C ++ DA  ++F  +   + +++T MMG         + L++FR 
Sbjct: 171 SNIYVSNALLCMYTKCGLNEDA-FRVFEGIVEPNEVTFTTMMGGLSQTNQVKEGLELFRL 229

Query: 242 MRKSRIICDTVALLNLISVNA------ILGDLK------RGKQLHAQVVLGGLQSELRLS 289
           M +  I  D+V+L  ++ + A      +  D +      +GKQ+H   V  G + +L L 
Sbjct: 230 MLRKGICVDSVSLSTILVICAKGVSFGVCDDSRGLSTNAQGKQIHTLAVKHGFERDLHLC 289

Query: 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD 349
           NS++ MY+K GD+DS+ +VF  + + S+VSW  +ISGY     + +AL  F +M+    +
Sbjct: 290 NSLLDMYAKTGDMDSAENVFENLDKHSVVSWNIMISGYGNRCDSEKALECFQRMQCCGYE 349

Query: 350 SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYI 409
             D +T +++LTA         C+                          K G+V +   
Sbjct: 350 P-DDVTYINMLTA---------CV--------------------------KSGDVKVGRQ 373

Query: 410 VFEEMGFLRDVVSWNTIIYGYGVNG-HGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
           +F+ M     ++SWN I+ GY  +  HGE A+ L+ KM    + PD +T   IL++C   
Sbjct: 374 IFDCMS-SPSLISWNAILSGYNQSADHGE-AVELFRKMQFQWQNPDRTTLAIILSSCAEL 431

Query: 469 GLTNDG 474
           GL   G
Sbjct: 432 GLLEAG 437



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 98/376 (26%), Positives = 173/376 (46%), Gaps = 46/376 (12%)

Query: 150 AVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFR 209
           ++ ++ +++ C+   S +  ++IH    +  L  D  + N ++D+YS    + +A  +F 
Sbjct: 5   SLNLINLLQSCITNKSLSSAKIIHARIFRFTLFSDTFLCNHLIDLYSKCNQITSAHHVFD 64

Query: 210 EMECKDVISWTRMMGLFVDFEYAGDALKIFREMRK------------------SRIICDT 251
           ++  K++ S+  ++  F        A ++F +M +                   R   DT
Sbjct: 65  KIPHKNIFSYNAILSAFCKSNNLQYACRLFLQMPERNTVSLNTIITTMVKNGYERQALDT 124

Query: 252 VALL--------------NLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYS 297
             L+               + S    L D+  G++ H  V+  G  S + +SN+++ MY+
Sbjct: 125 YDLMMVYESVKPSHITFATVFSACGGLKDVNCGRRNHGLVLKVGFDSNIYVSNALLCMYT 184

Query: 298 KCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLV 357
           KCG  + +  VF  I E + V++T ++ G  Q    +E L  F ++   K   VDS++L 
Sbjct: 185 KCGLNEDAFRVFEGIVEPNEVTFTTMMGGLSQTNQVKEGLELF-RLMLRKGICVDSVSLS 243

Query: 358 SILTASGELAALEIC------------LQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
           +IL    +  +  +C             Q+H +A + GF R   + N L+  Y+K G++D
Sbjct: 244 TILVICAKGVSFGVCDDSRGLSTNAQGKQIHTLAVKHGFERDLHLCNSLLDMYAKTGDMD 303

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            A  VFE +     VVSWN +I GYG     E AL  + +M   G  PD  TY+++L AC
Sbjct: 304 SAENVFENLD-KHSVVSWNIMISGYGNRCDSEKALECFQRMQCCGYEPDDVTYINMLTAC 362

Query: 466 GHAGLTNDGLVIFNQM 481
             +G    G  IF+ M
Sbjct: 363 VKSGDVKVGRQIFDCM 378


>gi|302764012|ref|XP_002965427.1| hypothetical protein SELMODRAFT_84339 [Selaginella moellendorffii]
 gi|300166241|gb|EFJ32847.1| hypothetical protein SELMODRAFT_84339 [Selaginella moellendorffii]
          Length = 495

 Score =  228 bits (581), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 140/467 (29%), Positives = 242/467 (51%), Gaps = 14/467 (2%)

Query: 105 DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
           + FE + +  ++S + +VA +       QA++LF      G+ PN VT L+V+  C    
Sbjct: 31  EFFESMTHRNVISWSTMVAAYAQRGDHDQALVLFQKMEEEGVEPNEVTFLSVLDACANAE 90

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
           +    E+IH L  +  L + + V  +++ MY     L  A Q+F  +  KDV++W+ M+ 
Sbjct: 91  AVEQGEMIHRLAARKKLDVGLIVGTALVGMYGKCSRLIEARQVFDGIVEKDVVTWSTMIS 150

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            +    +  +A+++F  M    +  + + L++++   +  G L  GK  H  VV+ G  +
Sbjct: 151 AYAQLGHVREAIQLFGYMNLDGVRPNEIILMSILGACSSAGALAEGKMTHELVVICGFGA 210

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           ++   N++I MY KCGDL S+++VF  +  + L+SW+A+++   ++G  ++A   F +M 
Sbjct: 211 DVSTGNTLIKMYGKCGDLASAKAVFGGMERRDLISWSAMLAVIAEHGHCKDAFVHFRRMD 270

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
            E     D +T VS+L A   L AL     +H      GF     ++N LI  Y KCG++
Sbjct: 271 LEGVKP-DYVTFVSLLDACSLLGALVEGNVIHTRIRAEGFQSVMYIENSLIDMYGKCGSL 329

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
             A  +F+ M   R+V++W T+I     +  G+ AL L+ +M + G  PD   +LSI+++
Sbjct: 330 QAARGIFDRMSH-RNVITWTTMITACVQHEQGKEALELFEEMEKAGVQPDQVAFLSIIHS 388

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C H+GL  +G + F +M+E+    P  EH+  ++DLL R+G L++A  L   +    G  
Sbjct: 389 CSHSGLVEEGRIYFLKMVEDQSFTPGVEHFVGMLDLLGRSGKLNEAEELMEFMPVEPGVV 448

Query: 525 IWRALLSGCVLHVGRFQDAEALRSGSQKKGIIKI------PGISFLN 565
            W  LLS C  H     D E  R+G    G++ +      P +SF N
Sbjct: 449 GWNTLLSACKTH----NDTE--RAGRVAGGMLVLGPGHAGPYVSFSN 489



 Score =  198 bits (504), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 119/452 (26%), Positives = 226/452 (50%), Gaps = 30/452 (6%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           C   +  + LL+ Y K G ++EA   F+ +  +NV+SWS ++  Y+  G H++++  F  
Sbjct: 7   CCGEFVGNSLLNMYGKCGGVEEAREFFESMTHRNVISWSTMVAAYAQRGDHDQALVLFQK 66

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL--------------- 106
           M   G+ PN  T + VL A A  + +E    IH L  +  L+  L               
Sbjct: 67  MEEEGVEPNEVTFLSVLDACANAEAVEQGEMIHRLAARKKLDVGLIVGTALVGMYGKCSR 126

Query: 107 -------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                  F+G+    +V+ + +++ +      ++A+ LF +    G+ PN + +++++  
Sbjct: 127 LIEARQVFDGIVEKDVVTWSTMISAYAQLGHVREAIQLFGYMNLDGVRPNEIILMSILGA 186

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C + G+ A  ++ H L +  G   DVS  N+++ MY    DL +A  +F  ME +D+ISW
Sbjct: 187 CSSAGALAEGKMTHELVVICGFGADVSTGNTLIKMYGKCGDLASAKAVFGGMERRDLISW 246

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           + M+ +  +  +  DA   FR M    +  D V  ++L+   ++LG L  G  +H ++  
Sbjct: 247 SAMLAVIAEHGHCKDAFVHFRRMDLEGVKPDYVTFVSLLDACSLLGALVEGNVIHTRIRA 306

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G QS + + NS+I MY KCG L ++R +F++++ +++++WT +I+  VQ+   +EAL  
Sbjct: 307 EGFQSVMYIENSLIDMYGKCGSLQAARGIFDRMSHRNVITWTTMITACVQHEQGKEALEL 366

Query: 340 FIKMRQE--KTDSVDSITLVSILTASG--ELAALEICLQLHGIAFEAGFPRYRSVQNCLI 395
           F +M +   + D V  ++++   + SG  E   +     +   +F  G   +  + + L 
Sbjct: 367 FEEMEKAGVQPDQVAFLSIIHSCSHSGLVEEGRIYFLKMVEDQSFTPGVEHFVGMLDLL- 425

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
               + G ++ A  + E M     VV WNT++
Sbjct: 426 ---GRSGKLNEAEELMEFMPVEPGVVGWNTLL 454



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 111/389 (28%), Positives = 187/389 (48%), Gaps = 12/389 (3%)

Query: 180 GLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIF 239
           GL     V NS+L+MY     ++ A + F  M  ++VISW+ M+  +        AL +F
Sbjct: 5   GLCCGEFVGNSLLNMYGKCGGVEEAREFFESMTHRNVISWSTMVAAYAQRGDHDQALVLF 64

Query: 240 REMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKC 299
           ++M +  +  + V  L+++   A    +++G+ +H       L   L +  +++ MY KC
Sbjct: 65  QKMEEEGVEPNEVTFLSVLDACANAEAVEQGEMIHRLAARKKLDVGLIVGTALVGMYGKC 124

Query: 300 GDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSI 359
             L  +R VF+ I EK +V+W+ +IS Y Q G  REA+  F  M  +     + I L+SI
Sbjct: 125 SRLIEARQVFDGIVEKDVVTWSTMISAYAQLGHVREAIQLFGYMNLDGVRP-NEIILMSI 183

Query: 360 LTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRD 419
           L A     AL      H +    GF    S  N LI  Y KCG++  A  VF  M   RD
Sbjct: 184 LGACSSAGALAEGKMTHELVVICGFGADVSTGNTLIKMYGKCGDLASAKAVFGGME-RRD 242

Query: 420 VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFN 479
           ++SW+ ++     +GH + A   + +M   G  PD  T++S+L+AC   G   +G VI  
Sbjct: 243 LISWSAMLAVIAEHGHCKDAFVHFRRMDLEGVKPDYVTFVSLLDACSLLGALVEGNVIHT 302

Query: 480 QMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI--WRALLSGCVLHV 537
           ++  E   +        ++D+  + G L  A G+  ++      N+  W  +++ CV H 
Sbjct: 303 RIRAEG-FQSVMYIENSLIDMYGKCGSLQAARGIFDRMSH---RNVITWTTMITACVQHE 358

Query: 538 GRFQDAEALRSGSQ-KKGIIKIPGISFLN 565
              Q  EAL    + +K  ++   ++FL+
Sbjct: 359 ---QGKEALELFEEMEKAGVQPDQVAFLS 384


>gi|116312013|emb|CAJ86370.1| OSIGBa0117N13.14 [Oryza sativa Indica Group]
 gi|116312056|emb|CAJ86420.1| H0303G06.9 [Oryza sativa Indica Group]
          Length = 559

 Score =  228 bits (581), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 149/464 (32%), Positives = 239/464 (51%), Gaps = 6/464 (1%)

Query: 77  VLVAAAGLQNLELARSIHGLMVKFG---LESDLFEGLKNPYLVSCNAIVAGFINNKLFQQ 133
           V  A+A   +L L+  +     +FG       +F+G+ +  +VS  A+V+G+  N   ++
Sbjct: 37  VAAASASPPDLHLSTKLIIFYARFGDVAAARKMFDGMPHRSVVSWTAMVSGYARNGRPRE 96

Query: 134 AVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLD 193
           A+ LF   R SG  PN  T  +    C   G     E +H    K     D+ V ++++D
Sbjct: 97  ALELFALMRASGARPNQFTYGSAASACAGAGCARSGEQVHACAAKGRFAGDMFVQSALMD 156

Query: 194 MYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVA 253
           M+     ++ A Q+F EM  KDV+SW  ++  FV+  + GDAL +F  M K  +I D   
Sbjct: 157 MHLRCGSVEDARQLFAEMGKKDVVSWNALIRGFVERGHDGDALGLFSSMLKEAMIPDHYT 216

Query: 254 LLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT 313
           L + +    I+G     + +H+ ++  G   E  +  S+I  Y+KC  + S+R +++ I+
Sbjct: 217 LGSALKACGIVGVAVNVELIHSCIIKLGYWDEKVVIGSLINSYAKCRSMSSARVIYDSIS 276

Query: 314 EKSLVSWTAIISGYVQN-GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEIC 372
           E  LVS TA+ISGY  +   + +A+  F K+ + K   +D + L S+L     +A+    
Sbjct: 277 EPDLVSSTALISGYTMDRNYSEDAMELFCKIHR-KGLWIDGVLLSSVLCLCASVASARFG 335

Query: 373 LQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGV 432
            Q+H    +       ++ N L+  Y+K G    A   F+EM + R+V+SW ++I   G 
Sbjct: 336 TQIHAYMCKKQSMGDIALDNALVDMYAKAGEFSDAKRAFDEMPY-RNVISWTSLITACGR 394

Query: 433 NGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQE 492
           NG GE A+ L+++M E G  P+  T+LS+L+ACGH GLTN G+  F  M+    + P  E
Sbjct: 395 NGSGEDAVTLFNRMVEDGVRPNDVTFLSLLSACGHCGLTNKGMEYFTSMMSRYGIDPRAE 454

Query: 493 HYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
           HY   +DLLAR G L DA  L  K       ++  A+L  C LH
Sbjct: 455 HYSSAIDLLARGGQLEDAWKLVQKTNLKPNSSMLGAMLGACKLH 498



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/385 (25%), Positives = 192/385 (49%), Gaps = 24/385 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + S+KL+  Y + G +  A  +FD +P ++VVSW+ ++ GY+ NG   ++++ F+ M 
Sbjct: 46  DLHLSTKLIIFYARFGDVAAARKMFDGMPHRSVVSWTAMVSGYARNGRPREALELFALMR 105

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
            SG  PN FT      A AG         +H    K     D                  
Sbjct: 106 ASGARPNQFTYGSAASACAGAGCARSGEQVHACAAKGRFAGDMFVQSALMDMHLRCGSVE 165

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               LF  +    +VS NA++ GF+       A+ LF+      ++P+  T+ + ++ C 
Sbjct: 166 DARQLFAEMGKKDVVSWNALIRGFVERGHDGDALGLFSSMLKEAMIPDHYTLGSALKACG 225

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            +G     ELIH   IKLG   +  V  S+++ Y+    + +A  I+  +   D++S T 
Sbjct: 226 IVGVAVNVELIHSCIIKLGYWDEKVVIGSLINSYAKCRSMSSARVIYDSISEPDLVSSTA 285

Query: 222 MM-GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
           ++ G  +D  Y+ DA+++F ++ +  +  D V L +++ + A +   + G Q+HA +   
Sbjct: 286 LISGYTMDRNYSEDAMELFCKIHRKGLWIDGVLLSSVLCLCASVASARFGTQIHAYMCKK 345

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
               ++ L N+++ MY+K G+   ++  F+++  ++++SWT++I+   +NG   +A+  F
Sbjct: 346 QSMGDIALDNALVDMYAKAGEFSDAKRAFDEMPYRNVISWTSLITACGRNGSGEDAVTLF 405

Query: 341 IKMRQEKTDSVDSITLVSILTASGE 365
            +M ++     D +T +S+L+A G 
Sbjct: 406 NRMVEDGVRPND-VTFLSLLSACGH 429


>gi|297742226|emb|CBI34375.3| unnamed protein product [Vitis vinifera]
          Length = 814

 Score =  228 bits (581), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 177/619 (28%), Positives = 277/619 (44%), Gaps = 73/619 (11%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM--MLSG 66
           S LL  Y K G +  AE  F E    + V W+ ++ G+  NG  EK  + F  M  +  G
Sbjct: 156 SGLLDGYAKLGDVDSAEKCFKEFYIADSVVWTAMVCGFVWNGEFEKGREVFVEMRGLGLG 215

Query: 67  LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL---------------------ESD 105
           L  N F++  VL A   L ++     + GL VK GL                     +SD
Sbjct: 216 LELNEFSLTSVLGA---LSDVREGEQVFGLSVKMGLLCGCSIHLNNALMNMYSRCGSKSD 272

Query: 106 ---LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA 162
              +F+ +  P +VS    +    +     +A  LF       +  N   ++ V+     
Sbjct: 273 AIKMFDEMTEPDVVSWTERIGAAYDAI---EAFELFRLVLSGNMEVNEYMLINVLSAMRE 329

Query: 163 LGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
                    I GL  K G +L  SVNN+++ MY    ++ AA  IF EM C D +SW  +
Sbjct: 330 PKLLKSGRQIQGLCQKAGYLLVASVNNALIFMYGKCGEMVAARHIFDEMLCGDSVSWNSL 389

Query: 223 MGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL 282
           +  + +      ALK+F +MR   +  +   L +++ V A     ++  Q+H+ +V  G 
Sbjct: 390 IAGYAENGLMKQALKVFSQMRDYLLQPNKYTLASILEVAANSNFPEQAMQIHSYIVKLGF 449

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF-- 340
             +  + + +I  Y KC  +  S+ V++ I++ +++   A+ +  V  GC  +AL  F  
Sbjct: 450 IVDDSMLSCLITAYGKCNMICESKRVYSDISQINVLHLNAMAATLVHAGCHADALKLFQT 509

Query: 341 -IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
             ++ QE    VD ITL  +L A G L  LE    +H +A ++G  +   V++ +I  Y 
Sbjct: 510 GWRLHQE----VDCITLSIVLKACGALTDLEYGRNIHSMALKSGMSQDNFVESAVIDVYC 565

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           KCG VD A   F  +    ++V+WN ++ GY  +G       L++KM E G  PD  TYL
Sbjct: 566 KCGTVDEAAKTFMNVS-KNNLVAWNAMVMGYAQHGCYHEVFELFNKMLELGIQPDEITYL 624

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519
            +LN+C HAGL N+     + M+E + V P  EHY C++DL  R G L DA     ++  
Sbjct: 625 GVLNSCCHAGLVNEAHTYLSSMLELHGVVPCLEHYACMIDLFGRVGLLEDAKRTIDQMPI 684

Query: 520 GMGPNIWRALLSGCVLH---------------------------------VGRFQDAEAL 546
                IW+ LLSGC +H                                  GR+     L
Sbjct: 685 MPDAQIWQILLSGCNIHGNVDLGEVAAKKLIELQPENDSAYVLLSNLYASAGRWNAVGKL 744

Query: 547 RSGSQKKGIIKIPGISFLN 565
           R   +KK I K PG S++ 
Sbjct: 745 RRVMKKKIICKEPGSSWIQ 763



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 150/567 (26%), Positives = 264/567 (46%), Gaps = 54/567 (9%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D + SS +++ +  SG    A     + P  + VSW+ +I GY+           F+ +
Sbjct: 53  LDAFLSSFIVNRFAISGDFARARRFLLDTPYPDTVSWNSLISGYARFRQPGPVFDLFNGL 112

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL-----ESDLFEG-------- 109
             SGL P+ F++  ++     L+  E+A   HG+ +K GL      S L +G        
Sbjct: 113 RRSGLSPDEFSLSSLVKGCGVLEQNEVA---HGVCLKMGLLNGFVVSGLLDGYAKLGDVD 169

Query: 110 -----LKNPYL---VSCNAIVAGFINNKLFQQAVLLFNFFR--GSGLVPNAVTMLTVIRG 159
                 K  Y+   V   A+V GF+ N  F++   +F   R  G GL  N  ++ +V+  
Sbjct: 170 SAEKCFKEFYIADSVVWTAMVCGFVWNGEFEKGREVFVEMRGLGLGLELNEFSLTSVLG- 228

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSV--NNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
             AL      E + GL++K+GL+   S+  NN++++MYS       AI++F EM   DV+
Sbjct: 229 --ALSDVREGEQVFGLSVKMGLLCGCSIHLNNALMNMYSRCGSKSDAIKMFDEMTEPDVV 286

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           SWT  +G   D   A +A ++FR +    +  +   L+N++S       LK G+Q+    
Sbjct: 287 SWTERIGAAYD---AIEAFELFRLVLSGNMEVNEYMLINVLSAMREPKLLKSGRQIQGLC 343

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
              G      ++N++I MY KCG++ ++R +F+++     VSW ++I+GY +NG  ++AL
Sbjct: 344 QKAGYLLVASVNNALIFMYGKCGEMVAARHIFDEMLCGDSVSWNSLIAGYAENGLMKQAL 403

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
             F +MR       +  TL SIL  +      E  +Q+H    + GF    S+ +CLI++
Sbjct: 404 KVFSQMRDYLLQP-NKYTLASILEVAANSNFPEQAMQIHSYIVKLGFIVDDSMLSCLITA 462

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           Y KC  +  +  V+ ++  + +V+  N +       G    AL L+       +  D  T
Sbjct: 463 YGKCNMICESKRVYSDISQI-NVLHLNAMAATLVHAGCHADALKLFQTGWRLHQEVDCIT 521

Query: 458 YLSILNACG-----HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASG 512
              +L ACG       G     + + + M ++N V+ +      V+D+  + G + +A+ 
Sbjct: 522 LSIVLKACGALTDLEYGRNIHSMALKSGMSQDNFVESA------VIDVYCKCGTVDEAA- 574

Query: 513 LAGKLLEGMGPN---IWRALLSGCVLH 536
              K    +  N    W A++ G   H
Sbjct: 575 ---KTFMNVSKNNLVAWNAMVMGYAQH 598



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 119/497 (23%), Positives = 222/497 (44%), Gaps = 46/497 (9%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS--HMMLS 65
           ++ L++ Y + G   +A  +FDE+ E +VVSW+  I      G    +++AF    ++LS
Sbjct: 257 NNALMNMYSRCGSKSDAIKMFDEMTEPDVVSWTERI------GAAYDAIEAFELFRLVLS 310

Query: 66  GLLP-NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL---------------------- 102
           G +  N + ++ VL A    + L+  R I GL  K G                       
Sbjct: 311 GNMEVNEYMLINVLSAMREPKLLKSGRQIQGLCQKAGYLLVASVNNALIFMYGKCGEMVA 370

Query: 103 ESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA 162
              +F+ +     VS N+++AG+  N L +QA+ +F+  R   L PN  T+ +++     
Sbjct: 371 ARHIFDEMLCGDSVSWNSLIAGYAENGLMKQALKVFSQMRDYLLQPNKYTLASILEVAAN 430

Query: 163 LGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
                    IH   +KLG I+D S+ + ++  Y     +  + +++ ++   +V+    M
Sbjct: 431 SNFPEQAMQIHSYIVKLGFIVDDSMLSCLITAYGKCNMICESKRVYSDISQINVLHLNAM 490

Query: 223 MGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL 282
               V      DALK+F+   +     D + L  ++     L DL+ G+ +H+  +  G+
Sbjct: 491 AATLVHAGCHADALKLFQTGWRLHQEVDCITLSIVLKACGALTDLEYGRNIHSMALKSGM 550

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
             +  + +++I +Y KCG +D +   F  +++ +LV+W A++ GY Q+GC  E    F K
Sbjct: 551 SQDNFVESAVIDVYCKCGTVDEAAKTFMNVSKNNLVAWNAMVMGYAQHGCYHEVFELFNK 610

Query: 343 MRQEKTDSVDSITLVSILTASGEL-------AALEICLQLHGIAFEAGFPRYRSVQNCLI 395
           M +      D IT + +L +             L   L+LHG+        Y     C+I
Sbjct: 611 MLELGIQP-DEITYLGVLNSCCHAGLVNEAHTYLSSMLELHGVV--PCLEHYA----CMI 663

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
             + + G ++ A    ++M  + D   W  ++ G  ++G+ +       K+ E     DS
Sbjct: 664 DLFGRVGLLEDAKRTIDQMPIMPDAQIWQILLSGCNIHGNVDLGEVAAKKLIELQPENDS 723

Query: 456 STYLSILNACGHAGLTN 472
           + Y+ + N    AG  N
Sbjct: 724 A-YVLLSNLYASAGRWN 739



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 131/274 (47%), Gaps = 11/274 (4%)

Query: 157 IRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
           +R   +L    L +  + L +K G  LD  +++ +++ ++   D   A +   +    D 
Sbjct: 27  LRASASLLHPPLTDQSYALFLKSGFALDAFLSSFIVNRFAISGDFARARRFLLDTPYPDT 86

Query: 217 ISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQ 276
           +SW  ++  +  F   G    +F  +R+S +  D  +L +L+      G L++ +  H  
Sbjct: 87  VSWNSLISGYARFRQPGPVFDLFNGLRRSGLSPDEFSLSSLVKG---CGVLEQNEVAHGV 143

Query: 277 VVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
            +  GL +   +S  ++  Y+K GD+DS+   F +      V WTA++ G+V NG   + 
Sbjct: 144 CLKMGLLNGFVVS-GLLDGYAKLGDVDSAEKCFKEFYIADSVVWTAMVCGFVWNGEFEKG 202

Query: 337 LNQFIKMRQEKTD-SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ--NC 393
              F++MR       ++  +L S+L A  ++   E   Q+ G++ + G     S+   N 
Sbjct: 203 REVFVEMRGLGLGLELNEFSLTSVLGALSDVREGE---QVFGLSVKMGLLCGCSIHLNNA 259

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
           L++ YS+CG+   A  +F+EM    DVVSW   I
Sbjct: 260 LMNMYSRCGSKSDAIKMFDEMT-EPDVVSWTERI 292



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 2/85 (2%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  S ++  Y K G + EA   F  + + N+V+W+ ++ GY+ +G + +  + F+ M+
Sbjct: 553 DNFVESAVIDVYCKCGTVDEAAKTFMNVSKNNLVAWNAMVMGYAQHGCYHEVFELFNKML 612

Query: 64  LSGLLPNSFTMVGVLVAA--AGLQN 86
             G+ P+  T +GVL +   AGL N
Sbjct: 613 ELGIQPDEITYLGVLNSCCHAGLVN 637


>gi|302765755|ref|XP_002966298.1| hypothetical protein SELMODRAFT_61000 [Selaginella moellendorffii]
 gi|300165718|gb|EFJ32325.1| hypothetical protein SELMODRAFT_61000 [Selaginella moellendorffii]
          Length = 644

 Score =  228 bits (580), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 150/531 (28%), Positives = 264/531 (49%), Gaps = 34/531 (6%)

Query: 11  LLSNYFKSGKIKEAENLFDEIP-EKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLP 69
           LL  Y + G I+ A  LFD +  E+N   W+++I  Y   G+  +++  F   +L G+ P
Sbjct: 67  LLGMYVRCGSIESARKLFDSMAVERNGECWTVMISAYVRRGWINEALLLFKKSLLEGVRP 126

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLV---SCNAIVAGF- 125
           +  T + +L A +   +L+  + +H L+ + G +  +   L    +     C ++   + 
Sbjct: 127 SEGTFIALLHACSRPASLDQGKKLHRLLEEAGFQESIAPSLATSLIKMYGKCGSLDEAWK 186

Query: 126 INNKLFQQAVLLFNFFRGS--------------------GLVPNAVTMLTVIRGCV-ALG 164
           +  K+  + V L+     S                    G  P+ +T + V+R C     
Sbjct: 187 VMEKIESRDVELWTVMIASLSHFGKLDRAFELLKRMDLEGDRPSKMTFMAVLRACKDHPE 246

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
           +R +  ++HGL  + GL  DV V  S+++MY+   D   A ++F ++E +DV SW  ++ 
Sbjct: 247 ARQVGGVLHGLIRERGLESDVGVGTSLVNMYARWGDPQQAQEVFSQIEARDVSSWNCLLA 306

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            +        AL ++REM    +  D + L  +I V A L DL++G ++H Q+   G  S
Sbjct: 307 AYSRCSRQEQALVLYREMMLEGVKPDRLTLNTVIDVCASLKDLEQGSRIHQQIASSGFAS 366

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           +L L  ++I  Y +CG LD++  +F  +  +  V+W  +I+    +     A+  F +M+
Sbjct: 367 DLMLDTALITFYGRCGKLDAALEIFEALPARDNVTWNTMIASLNDHSSPEAAMGFFQRMQ 426

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
           QE   +   +TL+++L   G +   ++   +H    E+GF +   V+N LI++Y +CG +
Sbjct: 427 QEGM-APSRVTLLTVLGLCGSVGEAKL---VHSCVRESGFEQDSEVKNTLITAYGRCGGL 482

Query: 405 DLAYIVFEEMGFLRDV-VSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
             A  +FE +   R +  SWN ++  Y   G    AL L+H+M +  ++    T +S+L+
Sbjct: 483 AQAVEIFEALP--RKIESSWNAMMGAYAAQGKPRAALELFHRMVKLEQMIQPITLVSVLS 540

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVK-PSQEHYGCVVDLLARAGCLSDASGL 513
           AC HAGL + GL IF     +  V+  S E YGC +DLL RAG L +A  L
Sbjct: 541 ACSHAGLLHRGLQIFASTASDFGVQWRSLELYGCAIDLLGRAGQLQEAEML 591



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 120/495 (24%), Positives = 214/495 (43%), Gaps = 39/495 (7%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           I P  ++ L+  Y K G + EA  + ++I  ++V  W+++I   S  G  +++ +    M
Sbjct: 163 IAPSLATSLIKMYGKCGSLDEAWKVMEKIESRDVELWTVMIASLSHFGKLDRAFELLKRM 222

Query: 63  MLSGLLPNSFTMVGVLVAAAG-LQNLELARSIHGLMVKFGLESDL--------------- 106
            L G  P+  T + VL A     +  ++   +HGL+ + GLESD+               
Sbjct: 223 DLEGDRPSKMTFMAVLRACKDHPEARQVGGVLHGLIRERGLESDVGVGTSLVNMYARWGD 282

Query: 107 -------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                  F  ++   + S N ++A +      +QA++L+      G+ P+ +T+ TVI  
Sbjct: 283 PQQAQEVFSQIEARDVSSWNCLLAAYSRCSRQEQALVLYREMMLEGVKPDRLTLNTVIDV 342

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C +L        IH      G   D+ ++ +++  Y     LDAA++IF  +  +D ++W
Sbjct: 343 CASLKDLEQGSRIHQQIASSGFASDLMLDTALITFYGRCGKLDAALEIFEALPARDNVTW 402

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
             M+    D      A+  F+ M++  +    V LL ++    + G +   K +H+ V  
Sbjct: 403 NTMIASLNDHSSPEAAMGFFQRMQQEGMAPSRVTLLTVL---GLCGSVGEAKLVHSCVRE 459

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G + +  + N++I  Y +CG L  +  +F  +  K   SW A++  Y   G  R AL  
Sbjct: 460 SGFEQDSEVKNTLITAYGRCGGLAQAVEIFEALPRKIESSWNAMMGAYAAQGKPRAALEL 519

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ--NCLISS 397
           F +M + +   +  ITLVS+L+A      L   LQ+          ++RS++   C I  
Sbjct: 520 FHRMVKLE-QMIQPITLVSVLSACSHAGLLHRGLQIFASTASDFGVQWRSLELYGCAIDL 578

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
             + G +  A ++     F    V W T++    V G  E       K+ E         
Sbjct: 579 LGRAGQLQEAEMLVASSDFSGSSVLWITLLGASKVRGDEEAGKRAAVKVLE--------- 629

Query: 458 YLSILNACGHAGLTN 472
            L   NA  H  L+N
Sbjct: 630 -LDPGNAAAHVILSN 643



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 96/182 (52%), Gaps = 5/182 (2%)

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           R+  +++ MY +CG ++S+R +F+ +  E++   WT +IS YV+ G   EAL  F K   
Sbjct: 62  RVGVALLGMYVRCGSIESARKLFDSMAVERNGECWTVMISAYVRRGWINEALLLFKKSLL 121

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPR--YRSVQNCLISSYSKCGN 403
           E     +  T +++L A    A+L+   +LH +  EAGF      S+   LI  Y KCG+
Sbjct: 122 EGVRPSEG-TFIALLHACSRPASLDQGKKLHRLLEEAGFQESIAPSLATSLIKMYGKCGS 180

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           +D A+ V E++   RDV  W  +I      G  + A  L  +M   G+ P   T++++L 
Sbjct: 181 LDEAWKVMEKIES-RDVELWTVMIASLSHFGKLDRAFELLKRMDLEGDRPSKMTFMAVLR 239

Query: 464 AC 465
           AC
Sbjct: 240 AC 241


>gi|186512044|ref|NP_001119013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635616|sp|P0C8Q2.1|PP323_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g19191, mitochondrial; Flags: Precursor
 gi|332658758|gb|AEE84158.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score =  228 bits (580), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 156/508 (30%), Positives = 249/508 (49%), Gaps = 27/508 (5%)

Query: 54  KSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKN- 112
           +S+  F  M   G  PN+FT   V  A A L ++     +H  ++K    SD+F G    
Sbjct: 35  ESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCEMVHAHLIKSPFWSDVFVGTATV 94

Query: 113 PYLVSCN---------------------AIVAGFINNKLFQQAVLLFNFFRGSGLVPNAV 151
              V CN                     A+++GF  +    +A  LF   R + + P++V
Sbjct: 95  DMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAFSLFREMRLNEITPDSV 154

Query: 152 TMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM 211
           T++T+I+      S  L E +H + I+LG+ + V+V N+ +  Y    DLD+A  +F  +
Sbjct: 155 TVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTYGKCGDLDSAKLVFEAI 214

Query: 212 ECKD--VISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKR 269
           +  D  V+SW  M   +  F  A DA  ++  M +     D    +NL +       L +
Sbjct: 215 DRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTFINLAASCQNPETLTQ 274

Query: 270 GKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQ 329
           G+ +H+  +  G   ++   N+ I+MYSK  D  S+R +F+ +T ++ VSWT +ISGY +
Sbjct: 275 GRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISGYAE 334

Query: 330 NGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYR- 388
            G   EAL  F  M +   +  D +TL+S+++  G+  +LE    +   A   G  R   
Sbjct: 335 KGDMDEALALFHAMIK-SGEKPDLVTLLSLISGCGKFGSLETGKWIDARADIYGCKRDNV 393

Query: 389 SVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTE 448
            + N LI  YSKCG++  A  +F+     + VV+W T+I GY +NG    AL L+ KM +
Sbjct: 394 MICNALIDMYSKCGSIHEARDIFDNTP-EKTVVTWTTMIAGYALNGIFLEALKLFSKMID 452

Query: 449 TGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLS 508
               P+  T+L++L AC H+G    G   F+ M +   + P  +HY C+VDLL R G L 
Sbjct: 453 LDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNISPGLDHYSCMVDLLGRKGKLE 512

Query: 509 DASGLAGKLLEGMGPNIWRALLSGCVLH 536
           +A  L   +       IW ALL+ C +H
Sbjct: 513 EALELIRNMSAKPDAGIWGALLNACKIH 540



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 121/428 (28%), Positives = 199/428 (46%), Gaps = 26/428 (6%)

Query: 133 QAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVL 192
           +++LLF   +  G  PN  T   V + C  L     CE++H   IK     DV V  + +
Sbjct: 35  ESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCEMVHAHLIKSPFWSDVFVGTATV 94

Query: 193 DMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTV 252
           DM+     +D A ++F  M  +D  +W  M+  F    +   A  +FREMR + I  D+V
Sbjct: 95  DMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAFSLFREMRLNEITPDSV 154

Query: 253 ALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQI 312
            ++ LI   +    LK  + +HA  +  G+  ++ ++N+ I+ Y KCGDLDS++ VF  I
Sbjct: 155 TVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTYGKCGDLDSAKLVFEAI 214

Query: 313 T--EKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALE 370
              ++++VSW ++   Y   G A +A   +  M +E+    D  T +++  +      L 
Sbjct: 215 DRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKP-DLSTFINLAASCQNPETLT 273

Query: 371 ICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGY 430
               +H  A   G  +     N  IS YSK  +   A ++F+ M   R  VSW  +I GY
Sbjct: 274 QGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMT-SRTCVSWTVMISGY 332

Query: 431 GVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPS 490
              G  + ALAL+H M ++GE PD  T LS+++ CG  G    G            +   
Sbjct: 333 AEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETG----------KWIDAR 382

Query: 491 QEHYGC----------VVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRF 540
            + YGC          ++D+ ++ G + +A  +     E      W  +++G  L+ G F
Sbjct: 383 ADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVT-WTTMIAGYALN-GIF 440

Query: 541 QDAEALRS 548
            +A  L S
Sbjct: 441 LEALKLFS 448



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 124/520 (23%), Positives = 237/520 (45%), Gaps = 47/520 (9%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  +  +  + K   +  A  +F+ +PE++  +W+ ++ G+  +G  +K+   F  M 
Sbjct: 86  DVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAFSLFREMR 145

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE----------------SDL- 106
           L+ + P+S T++ ++ +A+  ++L+L  ++H + ++ G++                 DL 
Sbjct: 146 LNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTYGKCGDLD 205

Query: 107 -----FEGLK--NPYLVSCNAIVAGFINNKLFQQAVLLFNFF---RGSGLVPNAVTMLTV 156
                FE +   +  +VS N++   +    +F +A   F  +         P+  T + +
Sbjct: 206 SAKLVFEAIDRGDRTVVSWNSMFKAY---SVFGEAFDAFGLYCLMLREEFKPDLSTFINL 262

Query: 157 IRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
              C    +     LIH   I LG   D+   N+ + MYS   D  +A  +F  M  +  
Sbjct: 263 AASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTC 322

Query: 217 ISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQ 276
           +SWT M+  + +     +AL +F  M KS    D V LL+LIS     G L+ GK + A+
Sbjct: 323 VSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETGKWIDAR 382

Query: 277 V-VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
             + G  +  + + N++I MYSKCG +  +R +F+   EK++V+WT +I+GY  NG   E
Sbjct: 383 ADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVTWTTMIAGYALNGIFLE 442

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAALE-------ICLQLHGIAFEAGFPRYR 388
           AL  F KM        + IT +++L A     +LE       I  Q++ I+   G   Y 
Sbjct: 443 ALKLFSKMIDLDYKP-NHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNIS--PGLDHY- 498

Query: 389 SVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTE 448
              +C++    + G ++ A  +   M    D   W  ++    ++ + + A      +  
Sbjct: 499 ---SCMVDLLGRKGKLEEALELIRNMSAKPDAGIWGALLNACKIHRNVKIAEQAAESLFN 555

Query: 449 TGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVK 488
             E   ++ Y+ + N    AG+  DG      ++++  +K
Sbjct: 556 L-EPQMAAPYVEMANIYAAAGMW-DGFARIRSIMKQRNIK 593


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  228 bits (580), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 167/618 (27%), Positives = 292/618 (47%), Gaps = 96/618 (15%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           ++ +S Y + G+ + A ++F+ +  ++ V+++ +I GY  N   + + K F  M    L+
Sbjct: 64  NRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKMPDRDLI 123

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINN 128
             +  + G +       NL  AR+             LF  +    +VS NA+++GF  N
Sbjct: 124 SWNVMLSGYVKNG----NLSAARA-------------LFNQMPEKDVVSWNAMLSGFAQN 166

Query: 129 KLFQQAVLLFNFFRGSGLVPNAVTM-----LTVIRGCVALGSRALCELIHGLTIKLGLIL 183
              ++A  +F+      LV N ++        V  G +    R     +    +    ++
Sbjct: 167 GFVEEARKIFDQM----LVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLM 222

Query: 184 DVSVNNSVLDMYSCLMD----------------------LDAAIQIFREMECKDVISWTR 221
              V    LD    L D                      L  A ++F E+  +DV +WT 
Sbjct: 223 GGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTA 282

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH-AQVVLG 280
           M+  FV      +A +IF EM +           N +S NA++    + +Q+  A+ +  
Sbjct: 283 MVSGFVQNGMLDEATRIFEEMPEK----------NEVSWNAMIAGYVQSQQIEKARELFD 332

Query: 281 GLQSELRLS-NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            + S    S N+++  Y++CG++D ++ +F+++ ++  +SW A+ISGY Q+G + EAL+ 
Sbjct: 333 QMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHL 392

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
           FIKM+++    ++   L   L++  E+AALE+  QLHG   +AGF       N L++ Y 
Sbjct: 393 FIKMKRD-GGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYG 451

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           KCG+++ A+ VFE++   +D+VSWNT+I GY  +G G+ ALAL+  M  T + PD  T +
Sbjct: 452 KCGSIEEAFDVFEDIT-EKDIVSWNTMIAGYARHGFGKEALALFESMKMTIK-PDDVTLV 509

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519
            +L+AC H G  + G+  FN M +   +  + +HY C++DLL RAG L +A  L   +  
Sbjct: 510 GVLSACSHTGFVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPF 569

Query: 520 GMGPNIWRALLSGCVLH---------------------------------VGRFQDAEAL 546
                 W ALL    +H                                  GR+++   +
Sbjct: 570 YPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREM 629

Query: 547 RSGSQKKGIIKIPGISFL 564
           RS  + KG+ K+PG S++
Sbjct: 630 RSKMRDKGVKKVPGYSWV 647



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 136/520 (26%), Positives = 236/520 (45%), Gaps = 67/520 (12%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  D  + + +LS Y K+G +  A  LF+++PEK+VVSW+ ++ G++ NGF E++ K F 
Sbjct: 118 PDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFD 177

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIH----------------GLMVKFGLES 104
            M    L+ N  +  G+L A      +E AR +                 G + K  L+ 
Sbjct: 178 QM----LVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDD 233

Query: 105 --DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLF------NFFRGSGLVPNAVTMLTV 156
              LF+ +     +S N ++ G+  N L  +A  LF      + F  + +V   V     
Sbjct: 234 ARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQ---- 289

Query: 157 IRGCVALGSRALCELIHGLTIKLGLIL----------------------DVSVNNSVLDM 194
             G +   +R   E+     +    ++                      + S  N+++  
Sbjct: 290 -NGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTG 348

Query: 195 YSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVAL 254
           Y+   ++D A  +F EM  +D ISW  M+  +     + +AL +F +M++   I +  AL
Sbjct: 349 YAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSAL 408

Query: 255 LNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE 314
              +S  A +  L+ GKQLH ++V  G Q+     N+++AMY KCG ++ +  VF  ITE
Sbjct: 409 ACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITE 468

Query: 315 KSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQ 374
           K +VSW  +I+GY ++G  +EAL  F  M+   T   D +TLV +L+A      ++  ++
Sbjct: 469 KDIVSWNTMIAGYARHGFGKEALALFESMKM--TIKPDDVTLVGVLSACSHTGFVDKGME 526

Query: 375 LHGIAFEAGFPRYRSVQN-----CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYG 429
                F + +  Y    N     C+I    + G +D A  + + M F  D  +W  ++  
Sbjct: 527 Y----FNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGA 582

Query: 430 YGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAG 469
             ++G  E       K+ E  E  +S  Y+ + N    +G
Sbjct: 583 SRIHGDTELGEKAAEKVFEM-EPDNSGMYVLLSNLYAASG 621



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 136/275 (49%), Gaps = 26/275 (9%)

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAIL-GDLKRGKQL 273
           D++ W R +  ++       AL +F  MR+           + ++ NA++ G L   K  
Sbjct: 59  DIVKWNRKISAYMRKGQCESALSVFNGMRRR----------STVTYNAMISGYLSNNKFD 108

Query: 274 HAQVVLGGLQSELRLS-NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC 332
            A+ V   +     +S N +++ Y K G+L ++R++FNQ+ EK +VSW A++SG+ QNG 
Sbjct: 109 CARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGF 168

Query: 333 AREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN 392
             EA   F +M  +     + I+   +L+A  +   +E   +L    F++         N
Sbjct: 169 VEEARKIFDQMLVK-----NEISWNGLLSAYVQNGRIEDARRL----FDSKMDWEIVSWN 219

Query: 393 CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV 452
           CL+  Y +   +D A  +F+ M  +RD +SWN +I GY  NG    A  L+ ++     +
Sbjct: 220 CLMGGYVRKKRLDDARSLFDRMP-VRDKISWNIMITGYAQNGLLSEARRLFEELP----I 274

Query: 453 PDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKV 487
            D   + ++++     G+ ++   IF +M E+N+V
Sbjct: 275 RDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEV 309



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 100/239 (41%), Gaps = 56/239 (23%)

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNG---CAREALN 338
           + S++   N  I+ Y + G  +S+ SVFN +  +S V++ A+ISGY+ N    CAR+   
Sbjct: 56  VDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVF- 114

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
                  EK    D I+                                    N ++S Y
Sbjct: 115 -------EKMPDRDLISW-----------------------------------NVMLSGY 132

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
            K GN+  A  +F +M   +DVVSWN ++ G+  NG  E A  ++ +M    E+    ++
Sbjct: 133 VKNGNLSAARALFNQMP-EKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNEI----SW 187

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL 517
             +L+A    G   D   +F+  ++   V      + C++    R   L DA  L  ++
Sbjct: 188 NGLLSAYVQNGRIEDARRLFDSKMDWEIVS-----WNCLMGGYVRKKRLDDARSLFDRM 241


>gi|302782105|ref|XP_002972826.1| hypothetical protein SELMODRAFT_173139 [Selaginella moellendorffii]
 gi|300159427|gb|EFJ26047.1| hypothetical protein SELMODRAFT_173139 [Selaginella moellendorffii]
          Length = 624

 Score =  228 bits (580), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 147/551 (26%), Positives = 266/551 (48%), Gaps = 45/551 (8%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTM 74
           Y K G ++ A+ +FD + E+++++W++++  Y+ NG   ++ + F  M++ G++PN  T 
Sbjct: 53  YGKFGCVESAKVVFDRVLERDIITWTLMVSAYAQNGHTRQAFQVFGKMLVEGVVPNKVTF 112

Query: 75  VGVLVAAAGLQNLELARSIHGLMVKFGLE---------SDLFEGLKN------------- 112
           + +L A +       A  +H L+ + G +          D +   KN             
Sbjct: 113 LAILNACSSSSE---AAFVHRLLFESGFQFTAKVESSLVDAYGKCKNVSAARAVFSSMTD 169

Query: 113 -PYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCEL 171
              +V+ NA +    +++    A+  F      GLVP+ VT +   +G     +    + 
Sbjct: 170 KTNVVTWNAFIRALASSRDASGALQTFRSLLLQGLVPDTVTFINASQGA---KTPPEAKY 226

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           +     + G+ LDV++ N++++M+        A ++F     K+++SW  M+  +    +
Sbjct: 227 LEACRQESGVQLDVALGNTLINMFGGSSQPCEARRVFDATHNKNIVSWNAMLSAYSQNGH 286

Query: 232 AGDALKIFREMRKSRII-CDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSN 290
             + + +F++M  ++ +  D +   +++S  A L +L+ GK  HA  V  GL+  + ++ 
Sbjct: 287 FEETIALFKQMASTKTVKPDKLTFASVLSSCANLENLREGKLAHAAAVEAGLEFAVPVAA 346

Query: 291 SIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDS 350
           ++I MYSKC  L+ +R +F++     +V+WT +IS Y QNG  +EA+  F +M    T  
Sbjct: 347 TLIQMYSKCHCLEEARDIFSRSPSSDVVAWTVMISAYAQNGRPQEAIALFFRM----TVP 402

Query: 351 VDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIV 410
            D +   ++L A      LE    +     E G    R+V N ++  Y KC  +     +
Sbjct: 403 PDGVAFATVLGACASSENLEAGRVVRAQIVELGLDAERAVANAVLDLYGKCAEIVETAEI 462

Query: 411 FEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGL 470
           F  M   RD VSWNT++  Y   GH   +L  +  M   G  P   + +S L+   HAGL
Sbjct: 463 FGRMR-QRDRVSWNTMVAAYARAGHTAGSLWCFRAMQLEGVCPSEVSLVSALSTYSHAGL 521

Query: 471 TNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN-----I 525
              G   F  +  +  + PS+E  GCVVDLL RAG     S +A  L+  + P+     +
Sbjct: 522 VEQGCQCFASIASDYGMVPSREQQGCVVDLLGRAG-----SWIAEDLIRVVAPSTSRSEL 576

Query: 526 WRALLSGCVLH 536
           W+A+LS C +H
Sbjct: 577 WKAVLSACRIH 587



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 123/445 (27%), Positives = 198/445 (44%), Gaps = 35/445 (7%)

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMV-------------------KFG- 101
           M   G+ PN F +V VL  ++G  +L   +  H  +                    KFG 
Sbjct: 1   MQQDGIAPNKFLLVRVL--SSGCSSLAQGKLAHACLSEATSGSDRVAGNAAINMYGKFGC 58

Query: 102 LESD--LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
           +ES   +F+ +    +++   +V+ +  N   +QA  +F      G+VPN VT L ++  
Sbjct: 59  VESAKVVFDRVLERDIITWTLMVSAYAQNGHTRQAFQVFGKMLVEGVVPNKVTFLAILNA 118

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK-DVIS 218
           C    S +    +H L  + G      V +S++D Y    ++ AA  +F  M  K +V++
Sbjct: 119 C---SSSSEAAFVHRLLFESGFQFTAKVESSLVDAYGKCKNVSAARAVFSSMTDKTNVVT 175

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           W   +        A  AL+ FR +    ++ DTV  +N    +         K L A   
Sbjct: 176 WNAFIRALASSRDASGALQTFRSLLLQGLVPDTVTFIN---ASQGAKTPPEAKYLEACRQ 232

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
             G+Q ++ L N++I M+        +R VF+    K++VSW A++S Y QNG   E + 
Sbjct: 233 ESGVQLDVALGNTLINMFGGSSQPCEARRVFDATHNKNIVSWNAMLSAYSQNGHFEETIA 292

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
            F +M   KT   D +T  S+L++   L  L      H  A EAG      V   LI  Y
Sbjct: 293 LFKQMASTKTVKPDKLTFASVLSSCANLENLREGKLAHAAAVEAGLEFAVPVAATLIQMY 352

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
           SKC  ++ A  +F       DVV+W  +I  Y  NG  + A+AL+ +MT     PD   +
Sbjct: 353 SKCHCLEEARDIFSRSPS-SDVVAWTVMISAYAQNGRPQEAIALFFRMTVP---PDGVAF 408

Query: 459 LSILNACGHAGLTNDGLVIFNQMIE 483
            ++L AC  +     G V+  Q++E
Sbjct: 409 ATVLGACASSENLEAGRVVRAQIVE 433



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 136/290 (46%), Gaps = 26/290 (8%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL-P 69
           L++ +  S +  EA  +FD    KN+VSW+ ++  YS NG  E+++  F  M  +  + P
Sbjct: 246 LINMFGGSSQPCEARRVFDATHNKNIVSWNAMLSAYSQNGHFEETIALFKQMASTKTVKP 305

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE----------------------SDLF 107
           +  T   VL + A L+NL   +  H   V+ GLE                       D+F
Sbjct: 306 DKLTFASVLSSCANLENLREGKLAHAAAVEAGLEFAVPVAATLIQMYSKCHCLEEARDIF 365

Query: 108 EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRA 167
               +  +V+   +++ +  N   Q+A+ L  FFR + + P+ V   TV+  C +  +  
Sbjct: 366 SRSPSSDVVAWTVMISAYAQNGRPQEAIAL--FFRMT-VPPDGVAFATVLGACASSENLE 422

Query: 168 LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
              ++    ++LGL  + +V N+VLD+Y    ++    +IF  M  +D +SW  M+  + 
Sbjct: 423 AGRVVRAQIVELGLDAERAVANAVLDLYGKCAEIVETAEIFGRMRQRDRVSWNTMVAAYA 482

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
              +   +L  FR M+   +    V+L++ +S  +  G +++G Q  A +
Sbjct: 483 RAGHTAGSLWCFRAMQLEGVCPSEVSLVSALSTYSHAGLVEQGCQCFASI 532


>gi|357114151|ref|XP_003558864.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic-like [Brachypodium distachyon]
          Length = 782

 Score =  228 bits (580), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 161/625 (25%), Positives = 286/625 (45%), Gaps = 64/625 (10%)

Query: 1   PCIDPYNSSKLLS---NYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMK 57
           P + P     L S   ++  +G++ +A       P+  +   ++VI G++  G  E ++ 
Sbjct: 36  PRVRPKRGPSLKSLVLSHAAAGRMHDALAAVRSSPDAFL--HNVVIRGFADAGLPEAALA 93

Query: 58  AFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL--------------- 102
           A+  M+ +G  P+ FT   V+   A L  LE  R+ H   ++ GL               
Sbjct: 94  AYRAMLAAGARPDRFTFPVVVKCCARLGALEEGRAAHSAAIRLGLVGSEVYTGNSLLAFY 153

Query: 103 --------ESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFN-FFRGSGLVPNAVTM 153
                      +F+G+    +V+ N++V G+++N L   A+  F     G  +  + V +
Sbjct: 154 AKLGMVADAERVFDGMPVRDIVTWNSMVDGYVSNGLGALALDCFREMHEGLQVQHDGVGI 213

Query: 154 LTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC 213
           +  +  C    +      +H   I+ GL  DV V  S+LDMY     + +A  +F  M  
Sbjct: 214 IAALAACCLDSALMQGREVHAYVIRHGLEQDVKVGTSLLDMYCKCGAIASAEGMFATMPS 273

Query: 214 KDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQL 273
           + V++W  M+G +       +A   F +M+      + V  +NL++  A       G+ +
Sbjct: 274 RTVVTWNCMIGGYALNGCPEEAFDCFVQMKAEGHQVEVVTAINLLAACAQTESSLYGRSV 333

Query: 274 HAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA 333
           H  V        + L  +++ MYSK G + SS ++F Q+T K+LVSW  +I+ Y+     
Sbjct: 334 HGYVTRSQFLPHVVLETALLEMYSKVGKVKSSETIFGQMTNKTLVSWNNMIAAYMYKEMY 393

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC 393
            EA+  F+++  +     D  T+ +++ A   L  L  C Q+H       +     V N 
Sbjct: 394 NEAITLFLELLNQPLYP-DYFTMSAVVPAFVLLGLLRQCRQMHSYIVRLDYGENTLVTNA 452

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           ++  Y++CG+V  +  +F++M   +DV+SWNTII GY ++G G+ AL ++ +M   G  P
Sbjct: 453 VMHMYARCGDVVSSRKIFDKMAG-KDVISWNTIIMGYAIHGQGKIALEMFSEMKSNGLQP 511

Query: 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL 513
           + ST++S+L AC  +G+ ++G + FN M  +  + P  EHYGC+ DLL RAG L +    
Sbjct: 512 NESTFVSVLTACSVSGMADEGWIQFNLMQRDYGIIPQIEHYGCMTDLLGRAGDLREVLKF 571

Query: 514 AGKLLEGMGPNIWRALL--------------------------SGCVL-------HVGRF 540
              +       IW +LL                          +GC +         GR+
Sbjct: 572 IESIPITPTFRIWGSLLTASRNRNDIDIAEYAAERIFELEHDNTGCYVILSSMYADAGRW 631

Query: 541 QDAEALRSGSQKKGIIKIPGISFLN 565
           +D + +RS   +KG+ +    S + 
Sbjct: 632 EDVQRIRSSMMEKGLRRTDARSIVE 656


>gi|293337115|ref|NP_001168043.1| uncharacterized protein LOC100381772 precursor [Zea mays]
 gi|223945665|gb|ACN26916.1| unknown [Zea mays]
 gi|224028321|gb|ACN33236.1| unknown [Zea mays]
          Length = 780

 Score =  228 bits (580), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 169/563 (30%), Positives = 276/563 (49%), Gaps = 32/563 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + +++ Y K G++  A N F  +P +NVVSW+  I G+        +M   + M+
Sbjct: 172 DVFVGTSIVNMYVKCGQMGAAMNEFWRMPIRNVVSWTTAIAGFVQQEDPVNAMLLLTEML 231

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--LFEGLKNPY------- 114
            SG+  N +T   +L+A +    +  A  +HG+++K  L  D  + E L + Y       
Sbjct: 232 RSGVAINKYTATSILLACSQTSMIREANQVHGMIIKSELYLDHVVKEALISTYANAGAVQ 291

Query: 115 ----------LVSCNAIVAGFIN---NKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                      VS  +I + FI+       Q+++ L        L PN     +V     
Sbjct: 292 LCEKVFQEVDTVSNRSIWSAFISGVSRHSVQRSIQLLRRMLFQCLRPNDKCYASVFS--- 348

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
           ++ S  L   +H L IK G I  V V +++  MYS   DL  + ++F EM+ +D +SWT 
Sbjct: 349 SVDSSELGRQLHPLVIKDGFIHVVLVASALSTMYSRCNDLKDSYKVFEEMQEQDEVSWTS 408

Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
           M+  F    ++ +A ++ R M       + V+L  ++S   I   L +GK++H  V L  
Sbjct: 409 MIAGFATHGHSVEAFQVLRNMIAEGFTPNDVSLSAILSACNIPECLLKGKEVHGHV-LRA 467

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
                 +++ +++MYSKC DL ++R +F+    K  +  +++ISGY  NG + EAL+ F 
Sbjct: 468 YGRTTSINHCLVSMYSKCKDLQTARKLFDATPCKDQIMLSSMISGYATNGYSEEALSLF- 526

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           ++       +D     SI++    +A       LHG A + G     SV + L+  YSK 
Sbjct: 527 QLMLAAGFHIDRFLCSSIISICANMARPFCGKLLHGYASKVGILSDLSVSSSLVKLYSKS 586

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           GN+D +  VF+E+  + D+V+W  II GY  +G  + ALAL+  M   G  PD+   +S+
Sbjct: 587 GNLDDSRKVFDELD-VPDLVTWTAIIDGYAQHGSSQDALALFDLMIRCGVKPDTVILVSV 645

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L+ACG  GL  +G   FN M     V+P   HY C+VDLL R+G L +A      +    
Sbjct: 646 LSACGRNGLVEEGFKHFNSMRTVYGVEPVLHHYCCMVDLLGRSGRLVEAKSFIESMPVKP 705

Query: 522 GPNIWRALLSGCVLH----VGRF 540
              +W  LL+ C +H    +GRF
Sbjct: 706 NSMVWSTLLAACRVHDDVVLGRF 728



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 154/590 (26%), Positives = 270/590 (45%), Gaps = 42/590 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEK-NVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           D Y  S ++    K G++ +A   F++   + +VV W+  I G   NG H   ++ F  M
Sbjct: 69  DAYICSTMVDLLAKHGRLGDALRAFEDGEYRGSVVCWNTAISGAVRNGEHALGVEMFLDM 128

Query: 63  ML-SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPY----- 114
           +  S   PNSFT  GVL A A  + L + R++HG++++   E D+F G  + N Y     
Sbjct: 129 VRGSTCEPNSFTYSGVLSACAAGEELGVGRAVHGMVLRRDSEYDVFVGTSIVNMYVKCGQ 188

Query: 115 ---------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                          +VS    +AGF+  +    A+LL      SG+  N  T  +++  
Sbjct: 189 MGAAMNEFWRMPIRNVVSWTTAIAGFVQQEDPVNAMLLLTEMLRSGVAINKYTATSILLA 248

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C           +HG+ IK  L LD  V  +++  Y+    +    ++F+E+   D +S 
Sbjct: 249 CSQTSMIREANQVHGMIIKSELYLDHVVKEALISTYANAGAVQLCEKVFQEV---DTVSN 305

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
             +   F+         +  + +R+    C         SV + +   + G+QLH  V+ 
Sbjct: 306 RSIWSAFISGVSRHSVQRSIQLLRRMLFQCLRPNDKCYASVFSSVDSSELGRQLHPLVIK 365

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G    + +++++  MYS+C DL  S  VF ++ E+  VSWT++I+G+  +G + EA   
Sbjct: 366 DGFIHVVLVASALSTMYSRCNDLKDSYKVFEEMQEQDEVSWTSMIAGFATHGHSVEAFQV 425

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
              M  E     D ++L +IL+A      L    ++HG    A + R  S+ +CL+S YS
Sbjct: 426 LRNMIAEGFTPND-VSLSAILSACNIPECLLKGKEVHGHVLRA-YGRTTSINHCLVSMYS 483

Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
           KC ++  A  +F+     +D +  +++I GY  NG+ E AL+L+  M   G   D     
Sbjct: 484 KCKDLQTARKLFDATP-CKDQIMLSSMISGYATNGYSEEALSLFQLMLAAGFHIDRFLCS 542

Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519
           SI++ C +      G ++ +    +  +         +V L +++G L D+  +  +L  
Sbjct: 543 SIISICANMARPFCGKLL-HGYASKVGILSDLSVSSSLVKLYSKSGNLDDSRKVFDELDV 601

Query: 520 GMGPNI--WRALLSGCVLHVGRFQDAEAL-----RSGSQKKGIIKIPGIS 562
              P++  W A++ G   H G  QDA AL     R G +   +I +  +S
Sbjct: 602 ---PDLVTWTAIIDGYAQH-GSSQDALALFDLMIRCGVKPDTVILVSVLS 647



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 128/522 (24%), Positives = 234/522 (44%), Gaps = 55/522 (10%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPE-KNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           +D      L+S Y  +G ++  E +F E+    N   WS  I G S +   ++S++    
Sbjct: 272 LDHVVKEALISTYANAGAVQLCEKVFQEVDTVSNRSIWSAFISGVSRHSV-QRSIQLLRR 330

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL------------------- 102
           M+   L PN      V    + + + EL R +H L++K G                    
Sbjct: 331 MLFQCLRPNDKCYASVF---SSVDSSELGRQLHPLVIKDGFIHVVLVASALSTMYSRCND 387

Query: 103 ---ESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                 +FE ++    VS  +++AGF  +    +A  +       G  PN V++  ++  
Sbjct: 388 LKDSYKVFEEMQEQDEVSWTSMIAGFATHGHSVEAFQVLRNMIAEGFTPNDVSLSAILSA 447

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C         + +HG  ++       S+N+ ++ MYS   DL  A ++F    CKD I  
Sbjct: 448 CNIPECLLKGKEVHGHVLR-AYGRTTSINHCLVSMYSKCKDLQTARKLFDATPCKDQIML 506

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           + M+  +    Y+ +AL +F+ M  +    D     ++IS+ A +     GK LH     
Sbjct: 507 SSMISGYATNGYSEEALSLFQLMLAAGFHIDRFLCSSIISICANMARPFCGKLLHGYASK 566

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G+ S+L +S+S++ +YSK G+LD SR VF+++    LV+WTAII GY Q+G +++AL  
Sbjct: 567 VGILSDLSVSSSLVKLYSKSGNLDDSRKVFDELDVPDLVTWTAIIDGYAQHGSSQDALAL 626

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN------- 392
           F  M +      D++ LVS+L+A G           +G+  E GF  + S++        
Sbjct: 627 FDLMIRCGVKP-DTVILVSVLSACGR----------NGLV-EEGFKHFNSMRTVYGVEPV 674

Query: 393 -----CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMT 447
                C++    + G +  A    E M    + + W+T++    V  H +  L  + +  
Sbjct: 675 LHHYCCMVDLLGRSGRLVEAKSFIESMPVKPNSMVWSTLLAACRV--HDDVVLGRFVENK 732

Query: 448 ETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKP 489
              E  DS  + ++ N   ++G   +G++   + +++ + +P
Sbjct: 733 IHEENCDSGCFATMSNIRANSG-DWEGVMEIRKSVKDVEKEP 773



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 120/273 (43%), Gaps = 13/273 (4%)

Query: 270 GKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDL-DSSRSVFNQITEKSLVSWTAIISGYV 328
            +QL+      GL  +  + ++++ + +K G L D+ R+  +     S+V W   ISG V
Sbjct: 54  AEQLYCAAWKDGLSRDAYICSTMVDLLAKHGRLGDALRAFEDGEYRGSVVCWNTAISGAV 113

Query: 329 QNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYR 388
           +NG     +  F+ M +  T   +S T   +L+A      L +   +HG+          
Sbjct: 114 RNGEHALGVEMFLDMVRGSTCEPNSFTYSGVLSACAAGEELGVGRAVHGMVLRRDSEYDV 173

Query: 389 SVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTE 448
            V   +++ Y KCG +  A   F  M  +R+VVSW T I G+        A+ L  +M  
Sbjct: 174 FVGTSIVNMYVKCGQMGAAMNEFWRMP-IRNVVSWTTAIAGFVQQEDPVNAMLLLTEMLR 232

Query: 449 TGEVPDSSTYLSILNACGHAGLTND-----GLVIFNQMIEENKVKPSQEHYGCVVDLLAR 503
           +G   +  T  SIL AC    +  +     G++I +++  ++ VK +      ++   A 
Sbjct: 233 SGVAINKYTATSILLACSQTSMIREANQVHGMIIKSELYLDHVVKEA------LISTYAN 286

Query: 504 AGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
           AG +     +  ++      +IW A +SG   H
Sbjct: 287 AGAVQLCEKVFQEVDTVSNRSIWSAFISGVSRH 319



 Score = 41.2 bits (95), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 46/223 (20%), Positives = 79/223 (35%), Gaps = 59/223 (26%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           PC D    S ++S Y                               + NG+ E+++  F 
Sbjct: 499 PCKDQIMLSSMISGY-------------------------------ATNGYSEEALSLFQ 527

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL------------------ 102
            M+ +G   + F    ++   A +      + +HG   K G+                  
Sbjct: 528 LMLAAGFHIDRFLCSSIISICANMARPFCGKLLHGYASKVGILSDLSVSSSLVKLYSKSG 587

Query: 103 ----ESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                  +F+ L  P LV+  AI+ G+  +   Q A+ LF+     G+ P+ V +++V+ 
Sbjct: 588 NLDDSRKVFDELDVPDLVTWTAIIDGYAQHGSSQDALALFDLMIRCGVKPDTVILVSVLS 647

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDL 201
            C   G   L E   G       +  V     VL  Y C++DL
Sbjct: 648 AC---GRNGLVE--EGFK-HFNSMRTVYGVEPVLHHYCCMVDL 684


>gi|224079788|ref|XP_002305943.1| predicted protein [Populus trichocarpa]
 gi|222848907|gb|EEE86454.1| predicted protein [Populus trichocarpa]
          Length = 693

 Score =  228 bits (580), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 162/555 (29%), Positives = 276/555 (49%), Gaps = 34/555 (6%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           S L+  Y K G I+EA  LF  +   +VVSW+ +I      G   ++++ +  M+ +G+ 
Sbjct: 80  SVLIDLYSKYGSIEEACRLFSCVENGDVVSWTTMISSLVQAGKWSQALRIYIDMIKAGVY 139

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF------------EGLKNPYLV 116
           PN FT V VL AAAG   L+  + +H  ++ FG+E +L             + + +   +
Sbjct: 140 PNEFTFVKVL-AAAGFLGLKHGKVVHAHLIVFGVELNLVVKTALVHMYSKCQRMDDAVRI 198

Query: 117 S----------CNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           S            AI++G   N   ++AV+ F     SG++ N  T L+++  C  + S 
Sbjct: 199 SKLTPESDRFLWTAILSGLAQNLKLREAVVAFQEMEASGILSNNFTYLSILNACSLILSL 258

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMY-SCLMDLDAAIQIFREMECKDVISWTRMMGL 225
            L   IH   I  GL  D+ V N+++DMY  C  +++  +++F  +E  DVISWT ++  
Sbjct: 259 DLGRQIHARVIMAGLEDDIPVGNALVDMYMKCSHEVEDGLRVFEGIESPDVISWTSLIAG 318

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
             +  +   +   + EM  S +  ++V L  ++          +  +LH  V+      +
Sbjct: 319 LSEHGFHQGSFDSYMEMTASGLQPNSVTLSIILRSCRAAKSASQLLKLHGHVIKTNADHD 378

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           + +SN+++  Y+    +D +  +   ++++  +++T + +   Q G    AL+    M  
Sbjct: 379 IAVSNALVDAYAGNERVDDAWHLIRNMSQRDALTYTGLATRLNQMGHHEMALHVINHMFN 438

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
           +    +D  ++   L+AS  L ++E  +QLH  + ++G     SV N L+S Y KCG   
Sbjct: 439 DDI-KMDGYSMAGFLSASAGLNSVETGMQLHSYSVKSGLGSSISVSNGLVSFYGKCGLTR 497

Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            A   F E+    D+VSWN +I      GH  +AL+ +  M  TG  PDS T+L +L  C
Sbjct: 498 DAERAFAEIR-EPDIVSWNGLISVLASYGHISSALSAFDDMRLTGVKPDSVTFLLVLFTC 556

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMG--P 523
            H GL + GL  FN M E + ++P  +HY C+ DLL RAG L +A     ++LE M   P
Sbjct: 557 THCGLVDMGLEYFNSMKEMHGIEPQLDHYVCLFDLLGRAGRLEEAM----EILETMPIRP 612

Query: 524 N--IWRALLSGCVLH 536
           N  I++ LL+ C +H
Sbjct: 613 NASIYKTLLAACKVH 627



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 113/372 (30%), Positives = 193/372 (51%), Gaps = 4/372 (1%)

Query: 115 LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHG 174
           +VS   I++ ++ ++  ++A+ +F    GSG  PN  T  +V+R C ALG  +  + IHG
Sbjct: 6   VVSWTGILSAYVKHEKHEEALGMFQEMMGSGPCPNEFTFSSVLRACSALGEFSDGKCIHG 65

Query: 175 LTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGD 234
             IK G   +  + + ++D+YS    ++ A ++F  +E  DV+SWT M+   V       
Sbjct: 66  CVIKHGFESNQILGSVLIDLYSKYGSIEEACRLFSCVENGDVVSWTTMISSLVQAGKWSQ 125

Query: 235 ALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIA 294
           AL+I+ +M K+ +  +    + +++    LG LK GK +HA +++ G++  L +  +++ 
Sbjct: 126 ALRIYIDMIKAGVYPNEFTFVKVLAAAGFLG-LKHGKVVHAHLIVFGVELNLVVKTALVH 184

Query: 295 MYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSI 354
           MYSKC  +D +  +     E     WTAI+SG  QN   REA+  F +M      S ++ 
Sbjct: 185 MYSKCQRMDDAVRISKLTPESDRFLWTAILSGLAQNLKLREAVVAFQEMEASGILS-NNF 243

Query: 355 TLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN-VDLAYIVFEE 413
           T +SIL A   + +L++  Q+H     AG      V N L+  Y KC + V+    VFE 
Sbjct: 244 TYLSILNACSLILSLDLGRQIHARVIMAGLEDDIPVGNALVDMYMKCSHEVEDGLRVFEG 303

Query: 414 MGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTND 473
           +    DV+SW ++I G   +G  + +   Y +MT +G  P+S T   IL +C  A   + 
Sbjct: 304 IES-PDVISWTSLIAGLSEHGFHQGSFDSYMEMTASGLQPNSVTLSIILRSCRAAKSASQ 362

Query: 474 GLVIFNQMIEEN 485
            L +   +I+ N
Sbjct: 363 LLKLHGHVIKTN 374



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 111/439 (25%), Positives = 215/439 (48%), Gaps = 26/439 (5%)

Query: 31  IPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELA 90
           +P ++VVSW+ ++  Y  +  HE+++  F  MM SG  PN FT   VL A + L      
Sbjct: 1   MPSRDVVSWTGILSAYVKHEKHEEALGMFQEMMGSGPCPNEFTFSSVLRACSALGEFSDG 60

Query: 91  RSIHGLMVKFGLESD----------------------LFEGLKNPYLVSCNAIVAGFINN 128
           + IHG ++K G ES+                      LF  ++N  +VS   +++  +  
Sbjct: 61  KCIHGCVIKHGFESNQILGSVLIDLYSKYGSIEEACRLFSCVENGDVVSWTTMISSLVQA 120

Query: 129 KLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVN 188
             + QA+ ++     +G+ PN  T + V+     LG +   +++H   I  G+ L++ V 
Sbjct: 121 GKWSQALRIYIDMIKAGVYPNEFTFVKVLAAAGFLGLKH-GKVVHAHLIVFGVELNLVVK 179

Query: 189 NSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRII 248
            +++ MYS    +D A++I +     D   WT ++          +A+  F+EM  S I+
Sbjct: 180 TALVHMYSKCQRMDDAVRISKLTPESDRFLWTAILSGLAQNLKLREAVVAFQEMEASGIL 239

Query: 249 CDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCG-DLDSSRS 307
            +    L++++  +++  L  G+Q+HA+V++ GL+ ++ + N+++ MY KC  +++    
Sbjct: 240 SNNFTYLSILNACSLILSLDLGRQIHARVIMAGLEDDIPVGNALVDMYMKCSHEVEDGLR 299

Query: 308 VFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELA 367
           VF  I    ++SWT++I+G  ++G  + + + +++M        +S+TL  IL +     
Sbjct: 300 VFEGIESPDVISWTSLIAGLSEHGFHQGSFDSYMEMTASGLQP-NSVTLSIILRSCRAAK 358

Query: 368 ALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
           +    L+LHG   +       +V N L+ +Y+    VD A+ +   M   RD +++  + 
Sbjct: 359 SASQLLKLHGHVIKTNADHDIAVSNALVDAYAGNERVDDAWHLIRNMS-QRDALTYTGLA 417

Query: 428 YGYGVNGHGETALALYHKM 446
                 GH E AL + + M
Sbjct: 418 TRLNQMGHHEMALHVINHM 436



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/256 (30%), Positives = 126/256 (49%), Gaps = 5/256 (1%)

Query: 211 MECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG 270
           M  +DV+SWT ++  +V  E   +AL +F+EM  S    +     +++   + LG+   G
Sbjct: 1   MPSRDVVSWTGILSAYVKHEKHEEALGMFQEMMGSGPCPNEFTFSSVLRACSALGEFSDG 60

Query: 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
           K +H  V+  G +S   L + +I +YSK G ++ +  +F+ +    +VSWT +IS  VQ 
Sbjct: 61  KCIHGCVIKHGFESNQILGSVLIDLYSKYGSIEEACRLFSCVENGDVVSWTTMISSLVQA 120

Query: 331 GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALE-ICLQLHGIAFEAGFPRYRS 389
           G   +AL  +I M +      +  T V +L A+G L       +  H I F  G      
Sbjct: 121 GKWSQALRIYIDMIKAGV-YPNEFTFVKVLAAAGFLGLKHGKVVHAHLIVF--GVELNLV 177

Query: 390 VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
           V+  L+  YSKC  +D A +   ++    D   W  I+ G   N     A+  + +M  +
Sbjct: 178 VKTALVHMYSKCQRMDDA-VRISKLTPESDRFLWTAILSGLAQNLKLREAVVAFQEMEAS 236

Query: 450 GEVPDSSTYLSILNAC 465
           G + ++ TYLSILNAC
Sbjct: 237 GILSNNFTYLSILNAC 252



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/237 (21%), Positives = 103/237 (43%), Gaps = 37/237 (15%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ L+  Y  + ++ +A +L   + +++ ++++ +    +  G HE ++   +HM    +
Sbjct: 382 SNALVDAYAGNERVDDAWHLIRNMSQRDALTYTGLATRLNQMGHHEMALHVINHMFNDDI 441

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL--------------------- 106
             + ++M G L A+AGL ++E    +H   VK GL S +                     
Sbjct: 442 KMDGYSMAGFLSASAGLNSVETGMQLHSYSVKSGLGSSISVSNGLVSFYGKCGLTRDAER 501

Query: 107 -FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
            F  ++ P +VS N +++   +      A+  F+  R +G+ P++VT L V+  C   G 
Sbjct: 502 AFAEIREPDIVSWNGLISVLASYGHISSALSAFDDMRLTGVKPDSVTFLLVLFTCTHCGL 561

Query: 166 RAL-CELIHGLTIKLGLILDVSVNNSVLDMYSCLMD-------LDAAIQIFREMECK 214
             +  E  + +    G+          LD Y CL D       L+ A++I   M  +
Sbjct: 562 VDMGLEYFNSMKEMHGI-------EPQLDHYVCLFDLLGRAGRLEEAMEILETMPIR 611


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  228 bits (580), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 157/537 (29%), Positives = 248/537 (46%), Gaps = 52/537 (9%)

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINN 128
           PN F+   ++ A A      +A               LF+ +  P LVS N +++ + + 
Sbjct: 72  PNVFSFNAIIAAYAKESRPLIAHQ-------------LFDQIPEPDLVSYNTLISAYADC 118

Query: 129 KLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVN 188
                A+ LF+  R  GL  +  T+  VI  C       L   +H + +  G    VSVN
Sbjct: 119 GETAPALGLFSGMREMGLDMDGFTLSAVITACC--DDVGLIGQLHSVAVSSGFDSYVSVN 176

Query: 189 NSVLDMYSCLMDLDAAIQIFREME-CKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRI 247
           N++L  Y    DLD A ++F  M   +D +SW  M+  +   +    AL +F+EM +  +
Sbjct: 177 NALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGL 236

Query: 248 ICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGD-LDSSR 306
             D   L ++++    L DL  G Q H Q++  G      + + +I +YSKCG  +   R
Sbjct: 237 NVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCR 296

Query: 307 SVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGEL 366
            VF +ITE  LV W  ++SGY QN    E   +  +  Q      +  + V +++A   L
Sbjct: 297 KVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNL 356

Query: 367 AALEICLQLHGIAFEAGFPRYR-SVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNT 425
           ++     Q+H +A ++  P  R SV N LI+ YSKCGN+  A  +F+ M    + VS N+
Sbjct: 357 SSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMA-EHNTVSLNS 415

Query: 426 IIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEEN 485
           +I GY  +G    +L L+  M E    P S T++S+L+AC H G   +G   FN M E+ 
Sbjct: 416 MIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKF 475

Query: 486 KVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH--------- 536
            ++P  EHY C++DLL RAG LS+A  L  ++    G   W +LL  C  H         
Sbjct: 476 NIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKA 535

Query: 537 ------------------------VGRFQDAEALRSGSQKKGIIKIPGISFLNSTSR 569
                                    GR+++   +R   + +G+ K PG S++    R
Sbjct: 536 ANQVLQLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKR 592



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 123/495 (24%), Positives = 234/495 (47%), Gaps = 33/495 (6%)

Query: 4   DP--YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           DP  ++ + +++ Y K  +   A  LFD+IPE ++VS++ +I  Y+  G    ++  FS 
Sbjct: 71  DPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSG 130

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES----------------D 105
           M   GL  + FT+  V+ A     ++ L   +H + V  G +S                D
Sbjct: 131 MREMGLDMDGFTLSAVITACC--DDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGD 188

Query: 106 LFEGLKNPY-------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
           L +  +  Y        VS N+++  +  ++   +A+ LF      GL  +  T+ +V+ 
Sbjct: 189 LDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLT 248

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYS-CLMDLDAAIQIFREMECKDVI 217
               L   +     HG  IK G   +  V + ++D+YS C   +    ++F E+   D++
Sbjct: 249 AFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLV 308

Query: 218 SWTRMM-GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQ 276
            W  M+ G   + E+  DAL+ FR+M+      +  + + +IS  + L    +GKQ+H+ 
Sbjct: 309 LWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSL 368

Query: 277 VVLGGLQS-ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
            +   + S  + + N++IAMYSKCG+L  +R +F+++ E + VS  ++I+GY Q+G   E
Sbjct: 369 ALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEME 428

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEA-GFPRYRSVQNCL 394
           +L+ F  M  E+  +  SIT +S+L+A      +E       +  E           +C+
Sbjct: 429 SLHLFQWML-ERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCM 487

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           I    + G +  A  +   M F    + W +++     +G+ E A+   +++ +  E  +
Sbjct: 488 IDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQL-EPSN 546

Query: 455 SSTYLSILNACGHAG 469
           ++ Y+ + N    AG
Sbjct: 547 AAPYVVLSNMYASAG 561



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 102/328 (31%), Positives = 149/328 (45%), Gaps = 43/328 (13%)

Query: 266 DLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSR------------------- 306
           DL  GK LH+  +   +      SN  I +YSKCG L  +R                   
Sbjct: 23  DLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPNVFSFNAIIA 82

Query: 307 ------------SVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSI 354
                        +F+QI E  LVS+  +IS Y   G    AL  F  MR+   D +D  
Sbjct: 83  AYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLD-MDGF 141

Query: 355 TLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM 414
           TL +++TA  +   L    QLH +A  +GF  Y SV N L++ Y K G++D A  VF  M
Sbjct: 142 TLSAVITACCDDVGL--IGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGM 199

Query: 415 GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDG 474
           G +RD VSWN++I  YG +  G  AL L+ +M   G   D  T  S+L A       + G
Sbjct: 200 GGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGG 259

Query: 475 LVIFNQMIEENKVKPSQEHYGCVVDLLAR-AGCLSDASGLAGKLLEGMGPN--IWRALLS 531
           L    Q+I+    + S    G ++DL ++  G +SD   +  ++ E   P+  +W  ++S
Sbjct: 260 LQFHGQLIKTGFHQNSHVGSG-LIDLYSKCGGGMSDCRKVFEEITE---PDLVLWNTMVS 315

Query: 532 GCVLHVGRFQDAEALRSGSQKKGIIKIP 559
           G   +    +D  AL    Q +GI   P
Sbjct: 316 GYSQNEEFLED--ALECFRQMQGIGYRP 341



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 105/477 (22%), Positives = 215/477 (45%), Gaps = 48/477 (10%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPE-KNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLP 69
           LL+ Y K+G + +A+ +F  +   ++ VSW+ +I  Y  +    K++  F  M+  GL  
Sbjct: 179 LLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNV 238

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-----------------------L 106
           + FT+  VL A   L++L      HG ++K G   +                       +
Sbjct: 239 DMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKV 298

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLF-QQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           FE +  P LV  N +V+G+  N+ F + A+  F   +G G  PN  + + VI  C  L S
Sbjct: 299 FEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSS 358

Query: 166 RALCELIHGLTIKLGLILD-VSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
            +  + IH L +K  +  + +SV+N+++ MYS   +L  A ++F  M   + +S   M+ 
Sbjct: 359 PSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIA 418

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG-KQLHAQVVLGGLQ 283
            +       ++L +F+ M + +I   ++  ++++S  A  G ++ G    +       ++
Sbjct: 419 GYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIE 478

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISGYVQNG---CAREALNQ 339
            E    + +I +  + G L  + ++  ++      + W +++     +G    A +A NQ
Sbjct: 479 PEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQ 538

Query: 340 FIKMRQEKTDSVDSITLVSILTASG---ELAALEICLQLHGIAFEAG--FPRYRSVQNCL 394
            +++  E +++   + L ++  ++G   E+A +   ++  G+  + G  +   +   +  
Sbjct: 539 VLQL--EPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVF 596

Query: 395 ISSYSKCGNVDLAYIVFEEM-------GFLRDVVSWNTIIYGYGVNGHGETALALYH 444
           ++  S    +   Y   EEM       G++ D V W  ++   G  G GE  + L H
Sbjct: 597 VAEDSSHPMIKEIYEFLEEMSGKMKRAGYVPD-VRW-ALVKDDGTRG-GEKEIRLGH 650


>gi|302754104|ref|XP_002960476.1| hypothetical protein SELMODRAFT_70138 [Selaginella moellendorffii]
 gi|300171415|gb|EFJ38015.1| hypothetical protein SELMODRAFT_70138 [Selaginella moellendorffii]
          Length = 672

 Score =  228 bits (580), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 152/552 (27%), Positives = 261/552 (47%), Gaps = 32/552 (5%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L++ Y K+G+   AE+LF  +  KN V+++ +I  YS      +++  +  M L G+ P+
Sbjct: 127 LINMYAKAGEFALAEDLFQRLKPKNAVAYTALIAAYSQFKMGREALGLYRAMHLEGVAPD 186

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------LFEGLKNPYL 115
              M+  L A A   +    R+IH  +   G + D               + E  K+ + 
Sbjct: 187 KVAMLSALGACASEPD---GRAIHACITCCGSDGDDTVASALVSMYGRFQMLESAKSVFF 243

Query: 116 VS---------CNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
                       N++++ ++ +   ++A+ LF      G+ P+ VT++ ++  C  L   
Sbjct: 244 HRRVPRSSVELWNSMISAYVQSGHHREALELFEKMELEGVAPDVVTIVEILGVCSVLRKL 303

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME--CKDVISWTRMMG 224
               +IH   ++  +  D +V +S+L++Y     L+ A+ +FRE     +D ++W  M+ 
Sbjct: 304 DKARMIHA-QLRARVDADTAVVDSLLNVYRECRSLEDAVTVFREEAGGARDCVAWNTMIA 362

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            + +    G ALK+F  M    +    V  + ++   + LG L RG  LH ++   GL  
Sbjct: 363 AYAECGDPGMALKLFTLMDLHGVEPTEVTYVAVLGAASSLGALTRGASLHHRIRSCGLDE 422

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
              +SNS++  Y  CG L S+ +VF+ +  +  VSW  I+  Y Q+GC   AL  F  M 
Sbjct: 423 LPFVSNSLMQFYGSCGRLSSATAVFHSLERRDEVSWNTIMGLYTQHGCCDTALAVFHGME 482

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
            E   + + ITL +++TA        I   +H      G   + +V + L++ Y K G +
Sbjct: 483 LEGVRA-NVITLTNVVTACTVTGDAAIGKSIHARVLSMGLEHHSAVGSALVAMYGKFGML 541

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           D A   F ++   ++ VSWN ++ G+   G     + L   M   G   D +TYL +L A
Sbjct: 542 DRAVSCFNDIS-AKNTVSWNALMTGFAQQGQSVETVQLSRAMQLQGMESDGATYLVVLFA 600

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C H GL  + L  F+ ++E+  V  + EHYGC++DLLARAG L  A  L   +       
Sbjct: 601 CSHGGLVEEALSCFSNLVEDGSVSVNDEHYGCLIDLLARAGWLDRAEDLFRSMPFEPDST 660

Query: 525 IWRALLSGCVLH 536
            W +L+  C LH
Sbjct: 661 SWMSLVGACKLH 672



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 132/520 (25%), Positives = 236/520 (45%), Gaps = 37/520 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           + Y  + L+  Y K G +++AE  F  I E+N+ +W+I +  ++ NG   +++  F  M 
Sbjct: 19  ETYLGNLLVDMYGKCGSLRDAEAAFHTIRERNLFTWTIAMTAFAQNGDPRQAIHLFQAMC 78

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMV----------------------KFG 101
           L G+  +       + A + L +L   RS+H  +                       +F 
Sbjct: 79  LDGVELDRVAFATAVGACSSLGDLHTGRSLHSTIATSSFQSDAVLRVSLINMYAKAGEFA 138

Query: 102 LESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
           L  DLF+ LK    V+  A++A +   K+ ++A+ L+      G+ P+ V ML+ +  C 
Sbjct: 139 LAEDLFQRLKPKNAVAYTALIAAYSQFKMGREALGLYRAMHLEGVAPDKVAMLSALGAC- 197

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIF--REMECKDVISW 219
              S      IH      G   D +V ++++ MY     L++A  +F  R +    V  W
Sbjct: 198 --ASEPDGRAIHACITCCGSDGDDTVASALVSMYGRFQMLESAKSVFFHRRVPRSSVELW 255

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
             M+  +V   +  +AL++F +M    +  D V ++ ++ V ++L  L + + +HAQ + 
Sbjct: 256 NSMISAYVQSGHHREALELFEKMELEGVAPDVVTIVEILGVCSVLRKLDKARMIHAQ-LR 314

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT--EKSLVSWTAIISGYVQNGCAREAL 337
             + ++  + +S++ +Y +C  L+ + +VF +     +  V+W  +I+ Y + G    AL
Sbjct: 315 ARVDADTAVVDSLLNVYRECRSLEDAVTVFREEAGGARDCVAWNTMIAAYAECGDPGMAL 374

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
             F  M     +  + +T V++L A+  L AL     LH      G      V N L+  
Sbjct: 375 KLFTLMDLHGVEPTE-VTYVAVLGAASSLGALTRGASLHHRIRSCGLDELPFVSNSLMQF 433

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           Y  CG +  A  VF  +   RD VSWNTI+  Y  +G  +TALA++H M   G   +  T
Sbjct: 434 YGSCGRLSSATAVFHSLE-RRDEVSWNTIMGLYTQHGCCDTALAVFHGMELEGVRANVIT 492

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCV 497
             +++ AC     T  G     + I    +    EH+  V
Sbjct: 493 LTNVVTAC-----TVTGDAAIGKSIHARVLSMGLEHHSAV 527



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 119/450 (26%), Positives = 208/450 (46%), Gaps = 27/450 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLF--DEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           D   +S L+S Y +   ++ A+++F    +P  +V  W+ +I  Y  +G H ++++ F  
Sbjct: 218 DDTVASALVSMYGRFQMLESAKSVFFHRRVPRSSVELWNSMISAYVQSGHHREALELFEK 277

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHG-LMVKFGLESDLFEGLKNPY------ 114
           M L G+ P+  T+V +L   + L+ L+ AR IH  L  +   ++ + + L N Y      
Sbjct: 278 MELEGVAPDVVTIVEILGVCSVLRKLDKARMIHAQLRARVDADTAVVDSLLNVYRECRSL 337

Query: 115 ----------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                            V+ N ++A +        A+ LF      G+ P  VT + V+ 
Sbjct: 338 EDAVTVFREEAGGARDCVAWNTMIAAYAECGDPGMALKLFTLMDLHGVEPTEVTYVAVLG 397

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
              +LG+      +H      GL     V+NS++  Y     L +A  +F  +E +D +S
Sbjct: 398 AASSLGALTRGASLHHRIRSCGLDELPFVSNSLMQFYGSCGRLSSATAVFHSLERRDEVS 457

Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
           W  +MGL+        AL +F  M    +  + + L N+++   + GD   GK +HA+V+
Sbjct: 458 WNTIMGLYTQHGCCDTALAVFHGMELEGVRANVITLTNVVTACTVTGDAAIGKSIHARVL 517

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
             GL+    + ++++AMY K G LD + S FN I+ K+ VSW A+++G+ Q G + E + 
Sbjct: 518 SMGLEHHSAVGSALVAMYGKFGMLDRAVSCFNDISAKNTVSWNALMTGFAQQGQSVETVQ 577

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ-NCLISS 397
               M+ +  +S D  T + +L A      +E  L       E G          CLI  
Sbjct: 578 LSRAMQLQGMES-DGATYLVVLFACSHGGLVEEALSCFSNLVEDGSVSVNDEHYGCLIDL 636

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
            ++ G +D A  +F  M F  D  SW +++
Sbjct: 637 LARAGWLDRAEDLFRSMPFEPDSTSWMSLV 666



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 137/298 (45%), Gaps = 11/298 (3%)

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYS---CLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
           IH    K G   +  + N ++DMY     L D +AA    RE   +++ +WT  M  F  
Sbjct: 7   IHEQMSKDGYARETYLGNLLVDMYGKCGSLRDAEAAFHTIRE---RNLFTWTIAMTAFAQ 63

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
                 A+ +F+ M    +  D VA    +   + LGDL  G+ LH+ +     QS+  L
Sbjct: 64  NGDPRQAIHLFQAMCLDGVELDRVAFATAVGACSSLGDLHTGRSLHSTIATSSFQSDAVL 123

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
             S+I MY+K G+   +  +F ++  K+ V++TA+I+ Y Q    REAL  +  M  E  
Sbjct: 124 RVSLINMYAKAGEFALAEDLFQRLKPKNAVAYTALIAAYSQFKMGREALGLYRAMHLEGV 183

Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408
               +   V++L+A G  A+      +H      G     +V + L+S Y +   ++ A 
Sbjct: 184 ----APDKVAMLSALGACASEPDGRAIHACITCCGSDGDDTVASALVSMYGRFQMLESAK 239

Query: 409 IVFEEMGFLRDVVS-WNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
            VF      R  V  WN++I  Y  +GH   AL L+ KM   G  PD  T + IL  C
Sbjct: 240 SVFFHRRVPRSSVELWNSMISAYVQSGHHREALELFEKMELEGVAPDVVTIVEILGVC 297



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 97/200 (48%), Gaps = 2/200 (1%)

Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISG 326
           L++GK +H Q+   G   E  L N ++ MY KCG L  + + F+ I E++L +WT  ++ 
Sbjct: 1   LEQGKTIHEQMSKDGYARETYLGNLLVDMYGKCGSLRDAEAAFHTIRERNLFTWTIAMTA 60

Query: 327 YVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPR 386
           + QNG  R+A++ F  M  +  + +D +   + + A   L  L     LH     + F  
Sbjct: 61  FAQNGDPRQAIHLFQAMCLDGVE-LDRVAFATAVGACSSLGDLHTGRSLHSTIATSSFQS 119

Query: 387 YRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM 446
              ++  LI+ Y+K G   LA  +F+ +   ++ V++  +I  Y     G  AL LY  M
Sbjct: 120 DAVLRVSLINMYAKAGEFALAEDLFQRLK-PKNAVAYTALIAAYSQFKMGREALGLYRAM 178

Query: 447 TETGEVPDSSTYLSILNACG 466
              G  PD    LS L AC 
Sbjct: 179 HLEGVAPDKVAMLSALGACA 198



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 106/252 (42%), Gaps = 40/252 (15%)

Query: 5   PYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML 64
           P+ S+ L+  Y   G++  A  +F  +  ++ VSW+ ++  Y+ +G  + ++  F  M L
Sbjct: 424 PFVSNSLMQFYGSCGRLSSATAVFHSLERRDEVSWNTIMGLYTQHGCCDTALAVFHGMEL 483

Query: 65  SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES-------------------- 104
            G+  N  T+  V+ A     +  + +SIH  ++  GLE                     
Sbjct: 484 EGVRANVITLTNVVTACTVTGDAAIGKSIHARVLSMGLEHHSAVGSALVAMYGKFGMLDR 543

Query: 105 --DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA 162
               F  +     VS NA++ GF       + V L    +  G+  +  T L V+  C  
Sbjct: 544 AVSCFNDISAKNTVSWNALMTGFAQQGQSVETVQLSRAMQLQGMESDGATYLVVLFACSH 603

Query: 163 LGSRALCELIHGLTIKLGLILD--VSVNNSVLDMYSCLMD-------LDAAIQIFREMEC 213
            G   L E    L+    L+ D  VSVN+   + Y CL+D       LD A  +FR M  
Sbjct: 604 GG---LVE--EALSCFSNLVEDGSVSVND---EHYGCLIDLLARAGWLDRAEDLFRSMPF 655

Query: 214 K-DVISWTRMMG 224
           + D  SW  ++G
Sbjct: 656 EPDSTSWMSLVG 667


>gi|39546235|emb|CAE04244.3| OSJNBa0089N06.5 [Oryza sativa Japonica Group]
 gi|125549842|gb|EAY95664.1| hypothetical protein OsI_17530 [Oryza sativa Indica Group]
 gi|215686910|dbj|BAG90780.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 559

 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 149/464 (32%), Positives = 239/464 (51%), Gaps = 6/464 (1%)

Query: 77  VLVAAAGLQNLELARSIHGLMVKFG---LESDLFEGLKNPYLVSCNAIVAGFINNKLFQQ 133
           V  A+A   +L L+  +     +FG       +F+G+ +  +VS  A+V+G+  N   ++
Sbjct: 37  VAAASASPPDLHLSTKLVIFYARFGDVAAARKVFDGMPHRSVVSWTAMVSGYARNGRPRE 96

Query: 134 AVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLD 193
           A+ LF   R SG  PN  T  +    C   G     E +H    K     D+ V ++++D
Sbjct: 97  ALELFALMRASGARPNQFTYGSAASACAGAGCARSGEQVHACAAKGRFAGDMFVQSALMD 156

Query: 194 MYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVA 253
           M+     ++ A Q+F EM  KDV+SW  ++  FV+  + GDAL +F  M K  +I D   
Sbjct: 157 MHLRCGSVEDARQLFAEMGKKDVVSWNALIRGFVERGHDGDALGLFSSMLKEAMIPDHYT 216

Query: 254 LLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT 313
           L + +    I+G     + +H+ ++  G   E  +  S+I  Y+KC  + S+R +++ I+
Sbjct: 217 LGSALKACGIVGVAVNVELIHSCIIKLGYWDEKVVIGSLINSYAKCRSMSSARVIYDSIS 276

Query: 314 EKSLVSWTAIISGYVQN-GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEIC 372
           E  LVS TA+ISGY  +   + +A+  F K+ + K   +D + L S+L     +A+    
Sbjct: 277 EPDLVSSTALISGYTMDRNYSEDAMELFCKIHR-KGLWIDGVLLSSVLCLCASVASARFG 335

Query: 373 LQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGV 432
            Q+H    +       ++ N L+  Y+K G    A   F+EM + R+V+SW ++I   G 
Sbjct: 336 TQIHAYMCKKQPMGDIALDNALVDMYAKAGEFSDAKRAFDEMPY-RNVISWTSLITACGR 394

Query: 433 NGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQE 492
           NG GE A+ L+++M E G  P+  T+LS+L+ACGH GLTN G+  F  M+    + P  E
Sbjct: 395 NGSGEDAVTLFNRMVEDGVRPNDVTFLSLLSACGHCGLTNKGMEYFTSMMSRYGIDPRAE 454

Query: 493 HYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
           HY   +DLLAR G L DA  L  K       ++  A+L  C LH
Sbjct: 455 HYSSAIDLLARGGQLEDAWKLVQKTNLKPNSSMLGAMLGACKLH 498



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 99/385 (25%), Positives = 192/385 (49%), Gaps = 24/385 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + S+KL+  Y + G +  A  +FD +P ++VVSW+ ++ GY+ NG   ++++ F+ M 
Sbjct: 46  DLHLSTKLVIFYARFGDVAAARKVFDGMPHRSVVSWTAMVSGYARNGRPREALELFALMR 105

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
            SG  PN FT      A AG         +H    K     D                  
Sbjct: 106 ASGARPNQFTYGSAASACAGAGCARSGEQVHACAAKGRFAGDMFVQSALMDMHLRCGSVE 165

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               LF  +    +VS NA++ GF+       A+ LF+      ++P+  T+ + ++ C 
Sbjct: 166 DARQLFAEMGKKDVVSWNALIRGFVERGHDGDALGLFSSMLKEAMIPDHYTLGSALKACG 225

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
            +G     ELIH   IKLG   +  V  S+++ Y+    + +A  I+  +   D++S T 
Sbjct: 226 IVGVAVNVELIHSCIIKLGYWDEKVVIGSLINSYAKCRSMSSARVIYDSISEPDLVSSTA 285

Query: 222 MM-GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
           ++ G  +D  Y+ DA+++F ++ +  +  D V L +++ + A +   + G Q+HA +   
Sbjct: 286 LISGYTMDRNYSEDAMELFCKIHRKGLWIDGVLLSSVLCLCASVASARFGTQIHAYMCKK 345

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
               ++ L N+++ MY+K G+   ++  F+++  ++++SWT++I+   +NG   +A+  F
Sbjct: 346 QPMGDIALDNALVDMYAKAGEFSDAKRAFDEMPYRNVISWTSLITACGRNGSGEDAVTLF 405

Query: 341 IKMRQEKTDSVDSITLVSILTASGE 365
            +M ++     D +T +S+L+A G 
Sbjct: 406 NRMVEDGVRPND-VTFLSLLSACGH 429


>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g11460
 gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
 gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 136/412 (33%), Positives = 221/412 (53%), Gaps = 6/412 (1%)

Query: 128 NKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSV 187
             LF +++ L+     SG  P+A +   +++ C +L      + +H    K G   +  V
Sbjct: 31  QSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVTKGGCETEPFV 90

Query: 188 NNSVLDMY-SCLMDLDAAIQIFREMECKDVIS--WTRMMGLFVDFEYAGDALKIFREMRK 244
             +++ MY  C +  DA  ++F E      +S  +  ++  +       DA  +FR M++
Sbjct: 91  LTALISMYCKCGLVADAR-KVFEENPQSSQLSVCYNALISGYTANSKVTDAAYMFRRMKE 149

Query: 245 SRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDS 304
           + +  D+V +L L+ +  +   L  G+ LH Q V GGL SE+ + NS I MY KCG +++
Sbjct: 150 TGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEA 209

Query: 305 SRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASG 364
            R +F+++  K L++W A+ISGY QNG A + L  + +M+       D  TLVS+L++  
Sbjct: 210 GRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGV-CPDPFTLVSVLSSCA 268

Query: 365 ELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWN 424
            L A +I  ++  +    GF     V N  IS Y++CGN+  A  VF+ M  ++ +VSW 
Sbjct: 269 HLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMP-VKSLVSWT 327

Query: 425 TIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEE 484
            +I  YG++G GE  L L+  M + G  PD + ++ +L+AC H+GLT+ GL +F  M  E
Sbjct: 328 AMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKRE 387

Query: 485 NKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
            K++P  EHY C+VDLL RAG L +A      +       +W ALL  C +H
Sbjct: 388 YKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIH 439



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 123/498 (24%), Positives = 220/498 (44%), Gaps = 41/498 (8%)

Query: 39  WSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMV 98
           W++ +   +      +S+  +  M+ SG  P++F+   +L + A L      + +H  + 
Sbjct: 21  WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVT 80

Query: 99  KFGLESDLF-----------------------EGLKNPYLVSC-NAIVAGFINNKLFQQA 134
           K G E++ F                       E  ++  L  C NA+++G+  N     A
Sbjct: 81  KGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDA 140

Query: 135 VLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDM 194
             +F   + +G+  ++VTML ++  C       L   +HG  +K GL  +V+V NS + M
Sbjct: 141 AYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITM 200

Query: 195 YSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVAL 254
           Y     ++A  ++F EM  K +I+W  ++  +     A D L+++ +M+ S +  D   L
Sbjct: 201 YMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTL 260

Query: 255 LNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE 314
           ++++S  A LG  K G ++   V   G    + +SN+ I+MY++CG+L  +R+VF+ +  
Sbjct: 261 VSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPV 320

Query: 315 KSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQ 374
           KSLVSWTA+I  Y  +G     L  F  M +      D    V +L+A       +  L+
Sbjct: 321 KSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRP-DGAVFVMVLSACSHSGLTDKGLE 379

Query: 375 L-----HGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYG 429
           L          E G   Y    +CL+    + G +D A    E M    D   W  ++  
Sbjct: 380 LFRAMKREYKLEPGPEHY----SCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGA 435

Query: 430 YGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEEN--KV 487
             ++ + + A   + K+ E    P++  Y  +++         +G+     M+ E   + 
Sbjct: 436 CKIHKNVDMAELAFAKVIEFE--PNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRK 493

Query: 488 KPSQ---EHYGCVVDLLA 502
           KP     EH G V   LA
Sbjct: 494 KPGYSYVEHKGRVHLFLA 511



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 164/352 (46%), Gaps = 36/352 (10%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVS--WSIVIHGYSINGFHEKSMKAFSH 61
           +P+  + L+S Y K G + +A  +F+E P+ + +S  ++ +I GY+ N     +   F  
Sbjct: 87  EPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDAAYMFRR 146

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------- 105
           M  +G+  +S TM+G++      + L L RS+HG  VK GL+S+                
Sbjct: 147 MKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGS 206

Query: 106 ------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                 LF+ +    L++ NA+++G+  N L    + L+   + SG+ P+  T+++V+  
Sbjct: 207 VEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSS 266

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C  LG++ +   +  L    G + +V V+N+ + MY+   +L  A  +F  M  K ++SW
Sbjct: 267 CAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSW 326

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           T M+G +         L +F +M K  I  D    + ++S  +  G   +G +L      
Sbjct: 327 TAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLEL-----F 381

Query: 280 GGLQSELRLS------NSIIAMYSKCGDLDSSRSVFNQI-TEKSLVSWTAII 324
             ++ E +L       + ++ +  + G LD +      +  E     W A++
Sbjct: 382 RAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALL 433


>gi|302805176|ref|XP_002984339.1| hypothetical protein SELMODRAFT_120395 [Selaginella moellendorffii]
 gi|300147727|gb|EFJ14389.1| hypothetical protein SELMODRAFT_120395 [Selaginella moellendorffii]
          Length = 479

 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 140/440 (31%), Positives = 226/440 (51%), Gaps = 16/440 (3%)

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           F+ +++  +VS   +V  F +      A+ LF      G+ PN VT + V+  C    SR
Sbjct: 15  FDSMRDRNVVSWTTVVTAFAHAGHPTAALRLFQRMLAEGIAPNKVTFVAVLHACS--DSR 72

Query: 167 ALCE---LIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
            L +   +IH    + GL  D SV  S+ +MY    D+D A  +  EM   DVI+W+ ++
Sbjct: 73  ELLDPGRMIHRCCEESGLGRDRSVAISLANMYGKCGDVDTAASMLDEMFQPDVIAWSAVI 132

Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
             F     + DAL +FR M+   +I + + L+  +S       L  GK LH+ +V   L+
Sbjct: 133 TGFAQQGRSSDALHLFRRMQHEGVIANKITLVATLSACTDSSSLADGKFLHSLIVEKKLE 192

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
           S++ +  +++ MY+ CG LD +R  F  +   ++++WTA+IS  V  G   EAL  F  +
Sbjct: 193 SDVIVGGALVTMYTNCGSLDDARRAFGAVRRPNVIAWTAMISACVHFGELDEALQIFRLI 252

Query: 344 RQEKTDS----VDSITLVSILTASGELAALEICLQLHG-IAFEAGFPRYRSVQNCLISSY 398
             +  D     +D I  V ++ A   L  L    +LH  I+ +        + N L++ Y
Sbjct: 253 EAQCLDDRELLLDGIVFVPLINACARLTDLSQGRRLHARISSDGSIKVDVQLGNALVNMY 312

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
           SKCG+V+ A  VF+ M + R  VSWNT+I  Y + GH E  L ++H+M + G  PD  ++
Sbjct: 313 SKCGSVEEAARVFDGMKY-RSTVSWNTMISAYAIAGHSEKVLWMFHRMQQEGVEPDEVSF 371

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
           + +L+AC  AG   +G   F    EE ++    +H+GC++DLL R G L +A  L  ++ 
Sbjct: 372 VGVLSACNAAGTVEEGCKYFGLCCEEYRILLEPQHFGCLIDLLGRVGYLDEAERLLRRMK 431

Query: 519 EGMGPNI--WRALLSGCVLH 536
           E   P++  W  LL  C +H
Sbjct: 432 E---PDVMAWMMLLDACRIH 448



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 121/445 (27%), Positives = 217/445 (48%), Gaps = 44/445 (9%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTM 74
           Y K G  ++A   FD + ++NVVSW+ V+  ++  G    +++ F  M+  G+ PN  T 
Sbjct: 2   YAKCGSARDALAAFDSMRDRNVVSWTTVVTAFAHAGHPTAALRLFQRMLAEGIAPNKVTF 61

Query: 75  VGVLVAAAGLQNL-ELARSIHGLMVKFGLESD----------------------LFEGLK 111
           V VL A +  + L +  R IH    + GL  D                      + + + 
Sbjct: 62  VAVLHACSDSRELLDPGRMIHRCCEESGLGRDRSVAISLANMYGKCGDVDTAASMLDEMF 121

Query: 112 NPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCEL 171
            P +++ +A++ GF        A+ LF   +  G++ N +T++  +  C    S A  + 
Sbjct: 122 QPDVIAWSAVITGFAQQGRSSDALHLFRRMQHEGVIANKITLVATLSACTDSSSLADGKF 181

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           +H L ++  L  DV V  +++ MY+    LD A + F  +   +VI+WT M+   V F  
Sbjct: 182 LHSLIVEKKLESDVIVGGALVTMYTNCGSLDDARRAFGAVRRPNVIAWTAMISACVHFGE 241

Query: 232 AGDALKIFREMRKS-----RIICDTVALLNLISVNAILGDLKRGKQLHAQVVL-GGLQSE 285
             +AL+IFR +         ++ D +  + LI+  A L DL +G++LHA++   G ++ +
Sbjct: 242 LDEALQIFRLIEAQCLDDRELLLDGIVFVPLINACARLTDLSQGRRLHARISSDGSIKVD 301

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
           ++L N+++ MYSKCG ++ +  VF+ +  +S VSW  +IS Y   G + + L  F +M+Q
Sbjct: 302 VQLGNALVNMYSKCGSVEEAARVFDGMKYRSTVSWNTMISAYAIAGHSEKVLWMFHRMQQ 361

Query: 346 EKTDSVDSITLVSILTASGELAALE-------ICLQLHGIAFEAGFPRYRSVQNCLISSY 398
           E  +  D ++ V +L+A      +E       +C + + I  E   P++     CLI   
Sbjct: 362 EGVEP-DEVSFVGVLSACNAAGTVEEGCKYFGLCCEEYRILLE---PQH---FGCLIDLL 414

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSW 423
            + G +D A  +   M    DV++W
Sbjct: 415 GRVGYLDEAERLLRRMK-EPDVMAW 438



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/252 (30%), Positives = 127/252 (50%), Gaps = 10/252 (3%)

Query: 295 MYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSI 354
           MY+KCG    + + F+ + ++++VSWT +++ +   G    AL  F +M  E   + + +
Sbjct: 1   MYAKCGSARDALAAFDSMRDRNVVSWTTVVTAFAHAGHPTAALRLFQRMLAEGI-APNKV 59

Query: 355 TLVSILTA-SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEE 413
           T V++L A S     L+    +H    E+G  R RSV   L + Y KCG+VD A  + +E
Sbjct: 60  TFVAVLHACSDSRELLDPGRMIHRCCEESGLGRDRSVAISLANMYGKCGDVDTAASMLDE 119

Query: 414 MGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTND 473
           M F  DV++W+ +I G+   G    AL L+ +M   G + +  T ++ L+AC  +    D
Sbjct: 120 M-FQPDVIAWSAVITGFAQQGRSSDALHLFRRMQHEGVIANKITLVATLSACTDSSSLAD 178

Query: 474 GLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI--WRALLS 531
           G    + +I E K++      G +V +    G L DA    G +     PN+  W A++S
Sbjct: 179 G-KFLHSLIVEKKLESDVIVGGALVTMYTNCGSLDDARRAFGAVRR---PNVIAWTAMIS 234

Query: 532 GCVLHVGRFQDA 543
            CV H G   +A
Sbjct: 235 ACV-HFGELDEA 245



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 170/339 (50%), Gaps = 22/339 (6%)

Query: 194 MYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDT-- 251
           MY+       A+  F  M  ++V+SWT ++  F    +   AL++F+ M    I  +   
Sbjct: 1   MYAKCGSARDALAAFDSMRDRNVVSWTTVVTAFAHAGHPTAALRLFQRMLAEGIAPNKVT 60

Query: 252 -VALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFN 310
            VA+L+  S +  L  L  G+ +H      GL  +  ++ S+  MY KCGD+D++ S+ +
Sbjct: 61  FVAVLHACSDSREL--LDPGRMIHRCCEESGLGRDRSVAISLANMYGKCGDVDTAASMLD 118

Query: 311 QITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALE 370
           ++ +  +++W+A+I+G+ Q G + +AL+ F +M+ E   + + ITLV+ L+A  + ++L 
Sbjct: 119 EMFQPDVIAWSAVITGFAQQGRSSDALHLFRRMQHEGVIA-NKITLVATLSACTDSSSLA 177

Query: 371 ICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLR--DVVSWNTIIY 428
               LH +  E        V   L++ Y+ CG++D A   F   G +R  +V++W  +I 
Sbjct: 178 DGKFLHSLIVEKKLESDVIVGGALVTMYTNCGSLDDARRAF---GAVRRPNVIAWTAMIS 234

Query: 429 GYGVNGHGETALALYHKMTETGEVPDSS------TYLSILNACGHAGLTNDGLVIFNQMI 482
                G  + AL ++ ++ E   + D         ++ ++NAC      + G  +  ++ 
Sbjct: 235 ACVHFGELDEALQIF-RLIEAQCLDDRELLLDGIVFVPLINACARLTDLSQGRRLHARIS 293

Query: 483 EENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
            +  +K   +    +V++ ++ G + +A+    ++ +GM
Sbjct: 294 SDGSIKVDVQLGNALVNMYSKCGSVEEAA----RVFDGM 328



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 71/350 (20%), Positives = 154/350 (44%), Gaps = 39/350 (11%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L + Y K G +  A ++ DE+ + +V++WS VI G++  G    ++  F  M   G++ N
Sbjct: 100 LANMYGKCGDVDTAASMLDEMFQPDVIAWSAVITGFAQQGRSSDALHLFRRMQHEGVIAN 159

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------------FE 108
             T+V  L A     +L   + +H L+V+  LESD+                      F 
Sbjct: 160 KITLVATLSACTDSSSLADGKFLHSLIVEKKLESDVIVGGALVTMYTNCGSLDDARRAFG 219

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGS-----GLVPNAVTMLTVIRGCVAL 163
            ++ P +++  A+++  ++     +A+ +F            L+ + +  + +I  C  L
Sbjct: 220 AVRRPNVIAWTAMISACVHFGELDEALQIFRLIEAQCLDDRELLLDGIVFVPLINACARL 279

Query: 164 GSRALCELIHGLTIKLGLI-LDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
              +    +H      G I +DV + N++++MYS    ++ A ++F  M+ +  +SW  M
Sbjct: 280 TDLSQGRRLHARISSDGSIKVDVQLGNALVNMYSKCGSVEEAARVFDGMKYRSTVSWNTM 339

Query: 223 MGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL 282
           +  +    ++   L +F  M++  +  D V+ + ++S     G ++ G +       G  
Sbjct: 340 ISAYAIAGHSEKVLWMFHRMQQEGVEPDEVSFVGVLSACNAAGTVEEGCKY-----FGLC 394

Query: 283 QSELRL------SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISG 326
             E R+         +I +  + G LD +  +  ++ E  +++W  ++  
Sbjct: 395 CEEYRILLEPQHFGCLIDLLGRVGYLDEAERLLRRMKEPDVMAWMMLLDA 444



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 2/83 (2%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D    + L++ Y K G ++EA  +FD +  ++ VSW+ +I  Y+I G  EK +  F  M
Sbjct: 300 VDVQLGNALVNMYSKCGSVEEAARVFDGMKYRSTVSWNTMISAYAIAGHSEKVLWMFHRM 359

Query: 63  MLSGLLPNSFTMVGVLVA--AAG 83
              G+ P+  + VGVL A  AAG
Sbjct: 360 QQEGVEPDEVSFVGVLSACNAAG 382


>gi|359495864|ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Vitis vinifera]
          Length = 751

 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 143/433 (33%), Positives = 239/433 (55%), Gaps = 6/433 (1%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F+ + + ++V+ N+++A +I N   ++A+ ++      G++P+  T  +V +    LG 
Sbjct: 132 VFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGILPDEFTFSSVFKAFSDLGL 191

Query: 166 RALCELIHGLTIKLGL-ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
               +  HG ++ LG+ + +V V ++++DMY+    +  A  +  ++  KDV+ +T ++ 
Sbjct: 192 VHEGQRAHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIV 251

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            +      G++L++FR M K  I  +   L +++     L DL  G+ +H  +V  GL+S
Sbjct: 252 GYSHHGEDGESLQVFRNMTKKGIEANEYTLSSVLVCCGNLEDLTSGRLIHGLIVKAGLES 311

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
            +    S++ MY +CG +D S  VF Q    + V+WT++I G VQNG    AL +F +M 
Sbjct: 312 AVASQTSLLTMYYRCGLVDDSLKVFKQFINPNQVTWTSVIVGLVQNGREEIALLKFRQML 371

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
           +    + +S TL S+L A   LA LE   Q+H I  + G    + V   LI  Y KCG+ 
Sbjct: 372 RSSI-TPNSFTLSSVLRACSSLAMLEQGKQIHAIVMKFGLDIDKYVGAALIDFYGKCGST 430

Query: 405 DLAYIVFEEMGFLR-DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
           ++A  VF   G L  DVVS N++IY Y  NG G  AL L+  M +TG  P++ T+L +L+
Sbjct: 431 EIARSVFN--GLLEVDVVSVNSMIYSYAQNGFGHEALQLFSGMKDTGLEPNNVTWLGVLS 488

Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
           AC +AGL  +G  IF+       ++ +++HY C+VDLL RAG L +A  L  + +     
Sbjct: 489 ACNNAGLLEEGCHIFSSARNSGNIELTKDHYACMVDLLGRAGRLKEAEMLINQ-VNISDV 547

Query: 524 NIWRALLSGCVLH 536
            IWR LLS C +H
Sbjct: 548 VIWRTLLSACRIH 560



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 125/485 (25%), Positives = 235/485 (48%), Gaps = 27/485 (5%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           +KL+  Y K G +  A  +FDE+P +++V+W+ +I  Y  NG  ++++  +  M+  G+L
Sbjct: 114 NKLIDAYLKCGSVVYARKVFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGIL 173

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE-SDLFEG------------LKNPYL 115
           P+ FT   V  A + L  +   +  HG  V  G+  S++F G            +++  L
Sbjct: 174 PDEFTFSSVFKAFSDLGLVHEGQRAHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRDARL 233

Query: 116 VS----------CNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           VS            A++ G+ ++    +++ +F      G+  N  T+ +V+  C  L  
Sbjct: 234 VSDQVVGKDVVLFTALIVGYSHHGEDGESLQVFRNMTKKGIEANEYTLSSVLVCCGNLED 293

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
                LIHGL +K GL   V+   S+L MY     +D ++++F++    + ++WT ++  
Sbjct: 294 LTSGRLIHGLIVKAGLESAVASQTSLLTMYYRCGLVDDSLKVFKQFINPNQVTWTSVIVG 353

Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
            V       AL  FR+M +S I  ++  L +++   + L  L++GKQ+HA V+  GL  +
Sbjct: 354 LVQNGREEIALLKFRQMLRSSITPNSFTLSSVLRACSSLAMLEQGKQIHAIVMKFGLDID 413

Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
             +  ++I  Y KCG  + +RSVFN + E  +VS  ++I  Y QNG   EAL  F  M+ 
Sbjct: 414 KYVGAALIDFYGKCGSTEIARSVFNGLLEVDVVSVNSMIYSYAQNGFGHEALQLFSGMKD 473

Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG-FPRYRSVQNCLISSYSKCGNV 404
              +  +++T + +L+A      LE    +   A  +G     +    C++    + G +
Sbjct: 474 TGLEP-NNVTWLGVLSACNNAGLLEEGCHIFSSARNSGNIELTKDHYACMVDLLGRAGRL 532

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
             A ++  ++  + DVV W T++    ++G  E A  + +++ +     D  T++ + N 
Sbjct: 533 KEAEMLINQVN-ISDVVIWRTLLSACRIHGDVEMAKRVMNRVIDLAP-EDGGTHVLLSNL 590

Query: 465 CGHAG 469
               G
Sbjct: 591 YASTG 595



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/322 (27%), Positives = 163/322 (50%), Gaps = 7/322 (2%)

Query: 155 TVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
           ++I+ C+ + S      I    +K G     S+ N ++D Y     +  A ++F E+  +
Sbjct: 82  SLIQQCIGIKSITDITKIQSHALKRGF--HHSLGNKLIDAYLKCGSVVYARKVFDEVPHR 139

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
            +++W  M+  ++    + +A+ I++ M    I+ D     ++    + LG +  G++ H
Sbjct: 140 HIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGILPDEFTFSSVFKAFSDLGLVHEGQRAH 199

Query: 275 AQ-VVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA 333
            Q VVLG   S + + ++++ MY+K G +  +R V +Q+  K +V +TA+I GY  +G  
Sbjct: 200 GQSVVLGVGVSNVFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGYSHHGED 259

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC 393
            E+L  F  M ++  ++ +  TL S+L   G L  L     +HG+  +AG     + Q  
Sbjct: 260 GESLQVFRNMTKKGIEA-NEYTLSSVLVCCGNLEDLTSGRLIHGLIVKAGLESAVASQTS 318

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLR-DVVSWNTIIYGYGVNGHGETALALYHKMTETGEV 452
           L++ Y +CG VD +  VF++  F+  + V+W ++I G   NG  E AL  + +M  +   
Sbjct: 319 LLTMYYRCGLVDDSLKVFKQ--FINPNQVTWTSVIVGLVQNGREEIALLKFRQMLRSSIT 376

Query: 453 PDSSTYLSILNACGHAGLTNDG 474
           P+S T  S+L AC    +   G
Sbjct: 377 PNSFTLSSVLRACSSLAMLEQG 398



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 115/251 (45%), Gaps = 45/251 (17%)

Query: 7   NSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSG 66
           + + LL+ Y++ G + ++  +F +    N V+W+ VI G   NG  E ++  F  M+ S 
Sbjct: 315 SQTSLLTMYYRCGLVDDSLKVFKQFINPNQVTWTSVIVGLVQNGREEIALLKFRQMLRSS 374

Query: 67  LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--------------------- 105
           + PNSFT+  VL A + L  LE  + IH +++KFGL+ D                     
Sbjct: 375 ITPNSFTLSSVLRACSSLAMLEQGKQIHAIVMKFGLDIDKYVGAALIDFYGKCGSTEIAR 434

Query: 106 -LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
            +F GL    +VS N+++  +  N    +A+ LF+  + +GL PN VT L V+  C   G
Sbjct: 435 SVFNGLLEVDVVSVNSMIYSYAQNGFGHEALQLFSGMKDTGLEPNNVTWLGVLSACNNAG 494

Query: 165 SRALCELIHGLTIKLGLILDVSVNNS-----VLDMYSCLMD-------LDAAIQIFREME 212
                       ++ G  +  S  NS       D Y+C++D       L  A  +  ++ 
Sbjct: 495 -----------LLEEGCHIFSSARNSGNIELTKDHYACMVDLLGRAGRLKEAEMLINQVN 543

Query: 213 CKDVISWTRMM 223
             DV+ W  ++
Sbjct: 544 ISDVVIWRTLL 554



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 108/238 (45%), Gaps = 42/238 (17%)

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
           L N +I  Y KCG +  +R VF+++  + +V+W ++I+ Y++NG ++EA++ + +M    
Sbjct: 112 LGNKLIDAYLKCGSVVYARKVFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRM---V 168

Query: 348 TDSV--DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS-VQNCLISSYSKCGNV 404
            D +  D  T  S+  A  +L  +    + HG +   G       V + L+  Y+K G +
Sbjct: 169 PDGILPDEFTFSSVFKAFSDLGLVHEGQRAHGQSVVLGVGVSNVFVGSALVDMYAKFGKM 228

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
             A +V +++   +DVV +  +I GY  +G    +L ++  MT+ G   +  T  S+L  
Sbjct: 229 RDARLVSDQV-VGKDVVLFTALIVGYSHHGEDGESLQVFRNMTKKGIEANEYTLSSVLVC 287

Query: 465 CGH-----------------------------------AGLTNDGLVIFNQMIEENKV 487
           CG+                                    GL +D L +F Q I  N+V
Sbjct: 288 CGNLEDLTSGRLIHGLIVKAGLESAVASQTSLLTMYYRCGLVDDSLKVFKQFINPNQV 345



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 2/84 (2%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           ID Y  + L+  Y K G  + A ++F+ + E +VVS + +I+ Y+ NGF  ++++ FS M
Sbjct: 412 IDKYVGAALIDFYGKCGSTEIARSVFNGLLEVDVVSVNSMIYSYAQNGFGHEALQLFSGM 471

Query: 63  MLSGLLPNSFTMVGVLVAA--AGL 84
             +GL PN+ T +GVL A   AGL
Sbjct: 472 KDTGLEPNNVTWLGVLSACNNAGL 495


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 150/527 (28%), Positives = 260/527 (49%), Gaps = 76/527 (14%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +FE ++ P L+  N +  G   N     A+ L+      GL+PN+ +   +++ C    S
Sbjct: 21  IFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKSCAK--S 78

Query: 166 RALCE--LIHGLTIKLGLILDVSVNNSVLDMYSC---LMD-------------------- 200
           +AL E   IHG  +KLG  LD+ VN S++ MY+    L D                    
Sbjct: 79  KALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTALI 138

Query: 201 --------LDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTV 252
                   ++ A ++F E+  KDV+SW  M+  +V+     +AL+++++M K+ +  D  
Sbjct: 139 TGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVKPDES 198

Query: 253 ALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQI 312
            ++ ++S  A  G ++ G+QLH+ +   G  S +++ N +I +YSKCG+++++  +F  +
Sbjct: 199 TMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGLFQGL 258

Query: 313 TEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEIC 372
            +K ++SW  +I G+      +EAL  F +M +   +S + +T++S+L A   L A++I 
Sbjct: 259 AKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRS-GESPNDVTMLSVLPACAHLGAIDIG 317

Query: 373 LQLHGIAFE--AGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGY 430
             +H    +   G     S+   LI  Y+KCG+++ A  VF+ M   R + SWN +I+G+
Sbjct: 318 RWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSM-LTRSLSSWNAMIFGF 376

Query: 431 GVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPS 490
            ++G    A  L+ KM + G  PD  T++ +L+AC H+G+ + G  IF  M ++ K+ P 
Sbjct: 377 AMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPK 436

Query: 491 QEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN--IWRALLSGCVLH------------ 536
            EHYGC++DLL   G   +A  +   +   M P+  IW +LL  C +H            
Sbjct: 437 LEHYGCMIDLLGHCGLFKEAKEMIRTM--PMEPDGVIWCSLLKACKMHNNVELGESYAQN 494

Query: 537 ---------------------VGRFQDAEALRSGSQKKGIIKIPGIS 562
                                 GR+     +R+    KGI K PG S
Sbjct: 495 LIKIEPENPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGIKKAPGCS 541



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 124/477 (25%), Positives = 224/477 (46%), Gaps = 67/477 (14%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           +LS +F    +  A ++F+ I E N++ W+ +  G+++N     ++K +  M+  GLLPN
Sbjct: 7   VLSPHFDG--LSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPN 64

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------------FE 108
           S++   +L + A  + L   + IHG ++K G + D+                      F+
Sbjct: 65  SYSFPFLLKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFD 124

Query: 109 GLKNPYLVSCNAIVA-----GFINN--KL------------------------FQQAVLL 137
              + ++VS  A++      G+INN  KL                        F++A+ L
Sbjct: 125 RSSHRHVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALEL 184

Query: 138 FNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSC 197
           +     + + P+  TM+TV+  C   GS  L   +H      G   ++ + N ++D+YS 
Sbjct: 185 YKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSK 244

Query: 198 LMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNL 257
             +++ A  +F+ +  KDVISW  ++G         +AL +F+EM +S    + V +L++
Sbjct: 245 CGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSV 304

Query: 258 ISVNAILGDLKRGKQLHAQV--VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK 315
           +   A LG +  G+ +H  +   L G+ +   L  S+I MY+KCGD+++++ VF+ +  +
Sbjct: 305 LPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTR 364

Query: 316 SLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQL 375
           SL SW A+I G+  +G A  A + F KMR+   D  D IT V +L+A      L++   +
Sbjct: 365 SLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDP-DDITFVGLLSACSHSGMLDLGRHI 423

Query: 376 HGIAFEAGFPRYRSVQN-----CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
               F +    Y+         C+I     CG    A  +   M    D V W +++
Sbjct: 424 ----FRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLL 476



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 53/91 (58%), Gaps = 4/91 (4%)

Query: 7   NSSKLLSN----YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           N+S LL++    Y K G I+ A+ +FD +  +++ SW+ +I G++++G    +   FS M
Sbjct: 333 NASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKM 392

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSI 93
             +G+ P+  T VG+L A +    L+L R I
Sbjct: 393 RKNGIDPDDITFVGLLSACSHSGMLDLGRHI 423


>gi|224057824|ref|XP_002299342.1| predicted protein [Populus trichocarpa]
 gi|222846600|gb|EEE84147.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 138/448 (30%), Positives = 226/448 (50%), Gaps = 5/448 (1%)

Query: 89  LARSIHGLMVKFGLESD---LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSG 145
           L  S+  +  K G  +D   +F+ ++   LVS N I++ +  N +F +   +F+      
Sbjct: 47  LENSVLKMYCKCGSLADARKVFDEMRERNLVSWNTIISAYAENGVFDKGFCMFSNMLELE 106

Query: 146 LVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAI 205
             PN  T +  +R  +      + + IH   I+ GL  + SVN ++ +MY     L+ A 
Sbjct: 107 TKPNGSTYIGFLRSLLNPSGLEIGKQIHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAE 166

Query: 206 QIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILG 265
            +F +M  K+ ++WT +M  +   E   DAL +F +M    +  D      ++   A L 
Sbjct: 167 LVFEKMSEKNAVAWTGIMVGYTQAERQMDALALFAKMVNEGVELDEYVFSIVLKACAGLE 226

Query: 266 DLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIIS 325
           +L  G+Q+H  +V  GL+SE+ +   ++  Y KC +L+S+   F  I+E + VSW+A+I+
Sbjct: 227 ELNFGRQIHGHIVKLGLESEVSVGTPLVDFYVKCSNLESATKAFEWISEPNDVSWSALIT 286

Query: 326 GYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFP 385
           GY Q G   EAL  F  +R    D ++S T  SI  A   LA      Q H  A ++   
Sbjct: 287 GYCQMGEFEEALKTFESLRTRSVD-INSFTYTSIFQACSALADFNSGAQAHADAIKSSLV 345

Query: 386 RYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHK 445
            Y+  ++ +I+ YS+CG +D A  VFE +    D V+W  II GY   G+   AL L+ +
Sbjct: 346 AYQHGESAMITMYSRCGRLDYATRVFESID-DPDAVAWTAIIAGYAYQGNAPEALKLFRR 404

Query: 446 MTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAG 505
           M + G  P++ T++++L AC H+GL  +G      M     V  + +HY C+VD+ +RAG
Sbjct: 405 MQDCGVRPNAVTFIAVLTACSHSGLVIEGRQYLESMSSNYGVATTIDHYDCMVDIYSRAG 464

Query: 506 CLSDASGLAGKLLEGMGPNIWRALLSGC 533
            L +A  L   +        W+ LL GC
Sbjct: 465 FLQEALELIRSMPFSPDAMSWKCLLGGC 492



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 119/442 (26%), Positives = 203/442 (45%), Gaps = 24/442 (5%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           +L  Y K G + +A  +FDE+ E+N+VSW+ +I  Y+ NG  +K    FS+M+     PN
Sbjct: 51  VLKMYCKCGSLADARKVFDEMRERNLVSWNTIISAYAENGVFDKGFCMFSNMLELETKPN 110

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFE 108
             T +G L +      LE+ + IH   ++ GL S+                      +FE
Sbjct: 111 GSTYIGFLRSLLNPSGLEIGKQIHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFE 170

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
            +     V+   I+ G+   +    A+ LF      G+  +      V++ C  L     
Sbjct: 171 KMSEKNAVAWTGIMVGYTQAERQMDALALFAKMVNEGVELDEYVFSIVLKACAGLEELNF 230

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
              IHG  +KLGL  +VSV   ++D Y    +L++A + F  +   + +SW+ ++  +  
Sbjct: 231 GRQIHGHIVKLGLESEVSVGTPLVDFYVKCSNLESATKAFEWISEPNDVSWSALITGYCQ 290

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
                +ALK F  +R   +  ++    ++    + L D   G Q HA  +   L +    
Sbjct: 291 MGEFEEALKTFESLRTRSVDINSFTYTSIFQACSALADFNSGAQAHADAIKSSLVAYQHG 350

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
            +++I MYS+CG LD +  VF  I +   V+WTAII+GY   G A EAL  F +M Q+  
Sbjct: 351 ESAMITMYSRCGRLDYATRVFESIDDPDAVAWTAIIAGYAYQGNAPEALKLFRRM-QDCG 409

Query: 349 DSVDSITLVSILTASGELA-ALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
              +++T +++LTA       +E    L  ++   G        +C++  YS+ G +  A
Sbjct: 410 VRPNAVTFIAVLTACSHSGLVIEGRQYLESMSSNYGVATTIDHYDCMVDIYSRAGFLQEA 469

Query: 408 YIVFEEMGFLRDVVSWNTIIYG 429
             +   M F  D +SW  ++ G
Sbjct: 470 LELIRSMPFSPDAMSWKCLLGG 491



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 77/162 (47%), Gaps = 25/162 (15%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           +  S +++ Y + G++  A  +F+ I + + V+W+ +I GY+  G   +++K F  M   
Sbjct: 349 HGESAMITMYSRCGRLDYATRVFESIDDPDAVAWTAIIAGYAYQGNAPEALKLFRRMQDC 408

Query: 66  GLLPNSFTMVGVLVAAA-------GLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSC 118
           G+ PN+ T + VL A +       G Q LE   S +G+        D ++ + + Y    
Sbjct: 409 GVRPNAVTFIAVLTACSHSGLVIEGRQYLESMSSNYGVATTI----DHYDCMVDIY---- 460

Query: 119 NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
               AGF+     Q+A+ L    R     P+A++   ++ GC
Sbjct: 461 --SRAGFL-----QEALEL---IRSMPFSPDAMSWKCLLGGC 492


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 157/537 (29%), Positives = 248/537 (46%), Gaps = 52/537 (9%)

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINN 128
           PN F+   ++ A A      +A               LF+ +  P LVS N +++ + + 
Sbjct: 72  PNVFSFNAIIAAYAKESRPLIAHQ-------------LFDQIPEPDLVSYNTLISAYADC 118

Query: 129 KLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVN 188
                A+ LF+  R  GL  +  T+  VI  C       L   +H + +  G    VSVN
Sbjct: 119 GETAPALGLFSGMREMGLDMDXFTLSAVITACC--DDVGLIGQLHSVAVSSGFDSYVSVN 176

Query: 189 NSVLDMYSCLMDLDAAIQIFREME-CKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRI 247
           N++L  Y    DLD A ++F  M   +D +SW  M+  +   +    AL +F+EM +  +
Sbjct: 177 NALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGL 236

Query: 248 ICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGD-LDSSR 306
             D   L ++++    L DL  G Q H Q++  G      + + +I +YSKCG  +   R
Sbjct: 237 NVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCR 296

Query: 307 SVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGEL 366
            VF +ITE  LV W  ++SGY QN    E   +  +  Q      +  + V +++A   L
Sbjct: 297 KVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNL 356

Query: 367 AALEICLQLHGIAFEAGFPRYR-SVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNT 425
           ++     Q+H +A ++  P  R SV N LI+ YSKCGN+  A  +F+ M    + VS N+
Sbjct: 357 SSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMA-EHNTVSLNS 415

Query: 426 IIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEEN 485
           +I GY  +G    +L L+  M E    P S T++S+L+AC H G   +G   FN M E+ 
Sbjct: 416 MIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKF 475

Query: 486 KVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH--------- 536
            ++P  EHY C++DLL RAG LS+A  L  ++    G   W +LL  C  H         
Sbjct: 476 NIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKA 535

Query: 537 ------------------------VGRFQDAEALRSGSQKKGIIKIPGISFLNSTSR 569
                                    GR+++   +R   + +G+ K PG S++    R
Sbjct: 536 ANQVLQLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKR 592



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 123/495 (24%), Positives = 234/495 (47%), Gaps = 33/495 (6%)

Query: 4   DP--YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           DP  ++ + +++ Y K  +   A  LFD+IPE ++VS++ +I  Y+  G    ++  FS 
Sbjct: 71  DPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSG 130

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES----------------D 105
           M   GL  + FT+  V+ A     ++ L   +H + V  G +S                D
Sbjct: 131 MREMGLDMDXFTLSAVITACC--DDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGD 188

Query: 106 LFEGLKNPY-------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
           L +  +  Y        VS N+++  +  ++   +A+ LF      GL  +  T+ +V+ 
Sbjct: 189 LDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLT 248

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYS-CLMDLDAAIQIFREMECKDVI 217
               L   +     HG  IK G   +  V + ++D+YS C   +    ++F E+   D++
Sbjct: 249 AFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLV 308

Query: 218 SWTRMM-GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQ 276
            W  M+ G   + E+  DAL+ FR+M+      +  + + +IS  + L    +GKQ+H+ 
Sbjct: 309 LWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSL 368

Query: 277 VVLGGLQS-ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
            +   + S  + + N++IAMYSKCG+L  +R +F+++ E + VS  ++I+GY Q+G   E
Sbjct: 369 ALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEME 428

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEA-GFPRYRSVQNCL 394
           +L+ F  M  E+  +  SIT +S+L+A      +E       +  E           +C+
Sbjct: 429 SLHLFQWML-ERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCM 487

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           I    + G +  A  +   M F    + W +++     +G+ E A+   +++ +  E  +
Sbjct: 488 IDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQL-EPSN 546

Query: 455 SSTYLSILNACGHAG 469
           ++ Y+ + N    AG
Sbjct: 547 AAPYVVLSNMYASAG 561



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 102/328 (31%), Positives = 149/328 (45%), Gaps = 43/328 (13%)

Query: 266 DLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSR------------------- 306
           DL  GK LH+  +   +      SN  I +YSKCG L  +R                   
Sbjct: 23  DLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPNVFSFNAIIA 82

Query: 307 ------------SVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSI 354
                        +F+QI E  LVS+  +IS Y   G    AL  F  MR+   D +D  
Sbjct: 83  AYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLD-MDXF 141

Query: 355 TLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM 414
           TL +++TA  +   L    QLH +A  +GF  Y SV N L++ Y K G++D A  VF  M
Sbjct: 142 TLSAVITACCDDVGL--IGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGM 199

Query: 415 GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDG 474
           G +RD VSWN++I  YG +  G  AL L+ +M   G   D  T  S+L A       + G
Sbjct: 200 GGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGG 259

Query: 475 LVIFNQMIEENKVKPSQEHYGCVVDLLAR-AGCLSDASGLAGKLLEGMGPN--IWRALLS 531
           L    Q+I+    + S    G ++DL ++  G +SD   +  ++ E   P+  +W  ++S
Sbjct: 260 LQFHGQLIKTGFHQNSHVGSG-LIDLYSKCGGGMSDCRKVFEEITE---PDLVLWNTMVS 315

Query: 532 GCVLHVGRFQDAEALRSGSQKKGIIKIP 559
           G   +    +D  AL    Q +GI   P
Sbjct: 316 GYSQNEEFLED--ALECFRQMQGIGYRP 341



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 105/477 (22%), Positives = 215/477 (45%), Gaps = 48/477 (10%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPE-KNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLP 69
           LL+ Y K+G + +A+ +F  +   ++ VSW+ +I  Y  +    K++  F  M+  GL  
Sbjct: 179 LLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNV 238

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-----------------------L 106
           + FT+  VL A   L++L      HG ++K G   +                       +
Sbjct: 239 DMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKV 298

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLF-QQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           FE +  P LV  N +V+G+  N+ F + A+  F   +G G  PN  + + VI  C  L S
Sbjct: 299 FEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSS 358

Query: 166 RALCELIHGLTIKLGLILD-VSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
            +  + IH L +K  +  + +SV+N+++ MYS   +L  A ++F  M   + +S   M+ 
Sbjct: 359 PSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIA 418

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG-KQLHAQVVLGGLQ 283
            +       ++L +F+ M + +I   ++  ++++S  A  G ++ G    +       ++
Sbjct: 419 GYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIE 478

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISGYVQNG---CAREALNQ 339
            E    + +I +  + G L  + ++  ++      + W +++     +G    A +A NQ
Sbjct: 479 PEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQ 538

Query: 340 FIKMRQEKTDSVDSITLVSILTASG---ELAALEICLQLHGIAFEAG--FPRYRSVQNCL 394
            +++  E +++   + L ++  ++G   E+A +   ++  G+  + G  +   +   +  
Sbjct: 539 VLQL--EPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVF 596

Query: 395 ISSYSKCGNVDLAYIVFEEM-------GFLRDVVSWNTIIYGYGVNGHGETALALYH 444
           ++  S    +   Y   EEM       G++ D V W  ++   G  G GE  + L H
Sbjct: 597 VAEDSSHPMIKEIYEFLEEMSGKMKRAGYVPD-VRW-ALVKDDGTRG-GEKEIRLGH 650


>gi|242059059|ref|XP_002458675.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
 gi|241930650|gb|EES03795.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
          Length = 894

 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 156/559 (27%), Positives = 270/559 (48%), Gaps = 47/559 (8%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           S +L+   +    ++A  L DE     V   ++V+    +    E   K  +H+++SGL 
Sbjct: 283 SNVLNELGRFSDAEQARKLLDERKIVKVPGLALVVTRSFV--MMEAVKKLHAHLVVSGLH 340

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINN 128
              + M  V+ + A LQ  +L                +FE +++P     N ++ G   +
Sbjct: 341 NCQYAMSKVIRSYA-LQQSDLV-----------FAHKVFEQIESPTTFLWNTLLRGLAQS 388

Query: 129 KLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVN 188
              + A++ +   +  G+ P+ +T   V++ C    +    E +H   IKLG +LD+ V+
Sbjct: 389 DAPKDAIVFYKKAQEKGMKPDNMTFPFVLKACAKTYAPKEGEQMHSHVIKLGFLLDIFVS 448

Query: 189 NSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRII 248
           NS++ +Y+   DL  A  IF EM  KDV+SW  ++G +       + L +F  M+   + 
Sbjct: 449 NSLIHLYAACGDLVCARSIFDEMLVKDVVSWNSLIGGYSQRNRFKEVLALFELMQAEEVQ 508

Query: 249 CDTVALLNLISVNAILGD-------LKRGKQLHAQV-------------VLGGLQSELRL 288
            D V ++ +IS    LGD       ++  ++ H +V              +G LQS  ++
Sbjct: 509 ADKVTMVKVISACTHLGDWSMADCMVRYIERNHIEVDVYLGNTLIDYYCRIGQLQSAEKV 568

Query: 289 S-----------NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
                       N++I  Y+K G+L S++ +F+QI  K L+SW+++I  Y Q     ++L
Sbjct: 569 FSQMKDKNTVTLNAMIHAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQASHFSDSL 628

Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
             F +M++ K    D++ + S+L+A   L AL++   +H             ++N LI  
Sbjct: 629 ELFRQMQRAKVKP-DAVVIASVLSACAHLGALDLGKWIHDYVRRNNIKTDTIMENSLIDM 687

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
           ++KCG +  A  VF EM   +D +SWN+II G   NG  + AL +++ M   G  P+  T
Sbjct: 688 FAKCGCMQEALQVFTEME-EKDTLSWNSIILGLANNGFEDEALNIFYSMLTEGPRPNEVT 746

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL 517
           +L +L AC +  L  +GL  F +M   + ++P  +HYGCVV +L+RAG L  A     ++
Sbjct: 747 FLGVLIACANKRLVQEGLDHFERMKTVHNLEPQMKHYGCVVGILSRAGQLEKAKNFINEM 806

Query: 518 LEGMGPNIWRALLSGCVLH 536
                P +WR LL  C  H
Sbjct: 807 PLAPDPVVWRILLGACKTH 825



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 147/564 (26%), Positives = 258/564 (45%), Gaps = 76/564 (13%)

Query: 19  GKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVL 78
           G+I+ A  LFD++P +NVVSW+ +I GY+    + +++  F HMM  G+ P+  T++ V+
Sbjct: 20  GEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALFRHMMAGGISPSEITVLAVV 79

Query: 79  VAAAGLQNLELARSIHGLMVKFGLESD-----------------------LFEGLKNPYL 115
            A + L  + +   +HG  VK G+ SD                         E L    L
Sbjct: 80  PAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLDRRNL 139

Query: 116 VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGL 175
           VS  +I++GF  + L  +A+ LF   R +G+ PN +T L+VI  C   G   L E   GL
Sbjct: 140 VSWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITFLSVINACSHGG---LVE--QGL 194

Query: 176 TIKLGLILDVSVNNSVLDMYSCLMD-------LDAAIQIFREMECK-DVISWTRMMGL-- 225
                ++ + +++  +   + C++D       L  A QI   +  + +VI W  ++G   
Sbjct: 195 AFFKSMVYEYNIDPEI-KHFGCIIDMLGRAGRLCEAEQIIEGLPVEVNVIVWRILLGCCS 253

Query: 226 -FVDFEYAGDALKI------------------------FREMRKSRIICDTVALLNLISV 260
            + + E    A+K+                        F +  ++R + D   ++ +  +
Sbjct: 254 KYGEVEMGKRAIKMISDLERESGGDFAVLSNVLNELGRFSDAEQARKLLDERKIVKVPGL 313

Query: 261 NAILGD----LKRGKQLHAQVVLGGLQSELRLSNSIIAMYS-KCGDLDSSRSVFNQITEK 315
             ++      ++  K+LHA +V+ GL +     + +I  Y+ +  DL  +  VF QI   
Sbjct: 314 ALVVTRSFVMMEAVKKLHAHLVVSGLHNCQYAMSKVIRSYALQQSDLVFAHKVFEQIESP 373

Query: 316 SLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQL 375
           +   W  ++ G  Q+   ++A+  F K  QEK    D++T   +L A  +  A +   Q+
Sbjct: 374 TTFLWNTLLRGLAQSDAPKDAI-VFYKKAQEKGMKPDNMTFPFVLKACAKTYAPKEGEQM 432

Query: 376 HGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGH 435
           H    + GF     V N LI  Y+ CG++  A  +F+EM  ++DVVSWN++I GY     
Sbjct: 433 HSHVIKLGFLLDIFVSNSLIHLYAACGDLVCARSIFDEM-LVKDVVSWNSLIGGYSQRNR 491

Query: 436 GETALALYHKMTETGEVPDSSTYLSILNACGHAGLTN--DGLVIFNQMIEENKVKPSQEH 493
            +  LAL+  M       D  T + +++AC H G  +  D +V +   IE N ++     
Sbjct: 492 FKEVLALFELMQAEEVQADKVTMVKVISACTHLGDWSMADCMVRY---IERNHIEVDVYL 548

Query: 494 YGCVVDLLARAGCLSDASGLAGKL 517
              ++D   R G L  A  +  ++
Sbjct: 549 GNTLIDYYCRIGQLQSAEKVFSQM 572



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 95/312 (30%), Positives = 156/312 (50%), Gaps = 34/312 (10%)

Query: 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD 349
           N +I  ++  G+++ +R +F+Q+  +++VSWT +I GY +     EA+  F  M      
Sbjct: 10  NVVITGFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALFRHMMAGGI- 68

Query: 350 SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYI 409
           S   IT+++++ A   L  + +   LHG   + G      V N LI  Y+K G+V  +  
Sbjct: 69  SPSEITVLAVVPAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKIGSVQNSLK 128

Query: 410 VFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAG 469
           VF+EM   R++VSW +II G+ ++G    AL L+ +M   G  P+  T+LS++NAC H G
Sbjct: 129 VFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITFLSVINACSHGG 188

Query: 470 LTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRAL 529
           L   GL  F  M+ E  + P  +H+GC++D+L RAG L +A  +   L   +   +WR L
Sbjct: 189 LVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPVEVNVIVWRIL 248

Query: 530 LSGCVLH---------------------------------VGRFQDAEALRSGSQKKGII 556
           L  C  +                                 +GRF DAE  R    ++ I+
Sbjct: 249 LGCCSKYGEVEMGKRAIKMISDLERESGGDFAVLSNVLNELGRFSDAEQARKLLDERKIV 308

Query: 557 KIPGISFLNSTS 568
           K+PG++ + + S
Sbjct: 309 KVPGLALVVTRS 320



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 124/548 (22%), Positives = 240/548 (43%), Gaps = 74/548 (13%)

Query: 6   YNSSKLLSNY-FKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML 64
           Y  SK++ +Y  +   +  A  +F++I       W+ ++ G + +   + ++  +     
Sbjct: 344 YAMSKVIRSYALQQSDLVFAHKVFEQIESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQE 403

Query: 65  SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY-------- 114
            G+ P++ T   VL A A     +    +H  ++K G   D+F    L + Y        
Sbjct: 404 KGMKPDNMTFPFVLKACAKTYAPKEGEQMHSHVIKLGFLLDIFVSNSLIHLYAACGDLVC 463

Query: 115 ------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA 162
                       +VS N+++ G+     F++ + LF   +   +  + VTM+ VI  C  
Sbjct: 464 ARSIFDEMLVKDVVSWNSLIGGYSQRNRFKEVLALFELMQAEEVQADKVTMVKVISACTH 523

Query: 163 LGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME---------- 212
           LG  ++ + +     +  + +DV + N+++D Y  +  L +A ++F +M+          
Sbjct: 524 LGDWSMADCMVRYIERNHIEVDVYLGNTLIDYYCRIGQLQSAEKVFSQMKDKNTVTLNAM 583

Query: 213 ---------------------CKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDT 251
                                 KD+ISW+ M+  +    +  D+L++FR+M+++++  D 
Sbjct: 584 IHAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQASHFSDSLELFRQMQRAKVKPDA 643

Query: 252 VALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQ 311
           V + +++S  A LG L  GK +H  V    ++++  + NS+I M++KCG +  +  VF +
Sbjct: 644 VVIASVLSACAHLGALDLGKWIHDYVRRNNIKTDTIMENSLIDMFAKCGCMQEALQVFTE 703

Query: 312 ITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEI 371
           + EK  +SW +II G   NG   EALN F  M  E     + +T + +L A      ++ 
Sbjct: 704 MEEKDTLSWNSIILGLANNGFEDEALNIFYSMLTEGPRP-NEVTFLGVLIACANKRLVQE 762

Query: 372 CLQLHGIAFEAGFPRYRSVQN---------CLISSYSKCGNVDLAYIVFEEMGFLRDVVS 422
            L          F R ++V N         C++   S+ G ++ A     EM    D V 
Sbjct: 763 GLD--------HFERMKTVHNLEPQMKHYGCVVGILSRAGQLEKAKNFINEMPLAPDPVV 814

Query: 423 WNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMI 482
           W  ++     +G+   A     K++E  +  +S  Y+ + N    A   +D L +  Q +
Sbjct: 815 WRILLGACKTHGNVAVAEVATKKLSEL-DPSNSGDYMLLSNIYASADRWSDALNV-RQWM 872

Query: 483 EENKVKPS 490
            +  V+ S
Sbjct: 873 ADTAVRKS 880



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 142/285 (49%), Gaps = 9/285 (3%)

Query: 189 NSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRII 248
           N V+  ++   +++ A  +F +M C++V+SWT ++  +       +A+ +FR M    I 
Sbjct: 10  NVVITGFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALFRHMMAGGIS 69

Query: 249 CDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSV 308
              + +L ++   + LG +  G+ LH   V  G+ S+ R+ NS+I +Y+K G + +S  V
Sbjct: 70  PSEITVLAVVPAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKIGSVQNSLKV 129

Query: 309 FNQITE-KSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELA 367
           F+++ + ++LVSWT+IISG+  +G + EAL  F +MR+      + IT +S++ A     
Sbjct: 130 FDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIRP-NRITFLSVINACSHGG 188

Query: 368 ALEICLQ-LHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTI 426
            +E  L     + +E           C+I    + G +  A  + E +    +V+ W  +
Sbjct: 189 LVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPVEVNVIVWRIL 248

Query: 427 I---YGYGVNGHGETALALYHKMT-ETGEVPDSSTYLSILNACGH 467
           +     YG    G+ A+ +   +  E+G   D +   ++LN  G 
Sbjct: 249 LGCCSKYGEVEMGKRAIKMISDLERESG--GDFAVLSNVLNELGR 291



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/370 (21%), Positives = 156/370 (42%), Gaps = 66/370 (17%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D + S+ L+  Y   G +  A ++FDE+  K+VVSW+ +I GYS     ++ +  F  M
Sbjct: 443 LDIFVSNSLIHLYAACGDLVCARSIFDEMLVKDVVSWNSLIGGYSQRNRFKEVLALFELM 502

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
               +  +  TMV V+ A   L +  +A  +   + +  +E D                 
Sbjct: 503 QAEEVQADKVTMVKVISACTHLGDWSMADCMVRYIERNHIEVDVYLGNTLIDYYCRIGQL 562

Query: 106 ------------------------------------LFEGLKNPYLVSCNAIVAGFINNK 129
                                               +F+ + N  L+S ++++  +    
Sbjct: 563 QSAEKVFSQMKDKNTVTLNAMIHAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQAS 622

Query: 130 LFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNN 189
            F  ++ LF   + + + P+AV + +V+  C  LG+  L + IH    +  +  D  + N
Sbjct: 623 HFSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALDLGKWIHDYVRRNNIKTDTIMEN 682

Query: 190 SVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIIC 249
           S++DM++    +  A+Q+F EME KD +SW  ++    +  +  +AL IF  M       
Sbjct: 683 SLIDMFAKCGCMQEALQVFTEMEEKDTLSWNSIILGLANNGFEDEALNIFYSMLTEGPRP 742

Query: 250 DTVALLNLIS-------VNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDL 302
           + V  L ++        V   L   +R K +H       L+ +++    ++ + S+ G L
Sbjct: 743 NEVTFLGVLIACANKRLVQEGLDHFERMKTVH------NLEPQMKHYGCVVGILSRAGQL 796

Query: 303 DSSRSVFNQI 312
           + +++  N++
Sbjct: 797 EKAKNFINEM 806



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 78/175 (44%), Gaps = 25/175 (14%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D    + L+  + K G ++EA  +F E+ EK+ +SW+ +I G + NGF ++++  F  M+
Sbjct: 677 DTIMENSLIDMFAKCGCMQEALQVFTEMEEKDTLSWNSIILGLANNGFEDEALNIFYSML 736

Query: 64  LSGLLPNSFTMVGVLVAAA-------GLQNLELARSIHGLMVKFGLESDLFEGLKNPYLV 116
             G  PN  T +GVL+A A       GL + E  +++H L                P + 
Sbjct: 737 TEGPRPNEVTFLGVLIACANKRLVQEGLDHFERMKTVHNL---------------EPQMK 781

Query: 117 SCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCEL 171
               +V         ++A    NF     L P+ V    ++  C   G+ A+ E+
Sbjct: 782 HYGCVVGILSRAGQLEKAK---NFINEMPLAPDPVVWRILLGACKTHGNVAVAEV 833


>gi|242067895|ref|XP_002449224.1| hypothetical protein SORBIDRAFT_05g006590 [Sorghum bicolor]
 gi|241935067|gb|EES08212.1| hypothetical protein SORBIDRAFT_05g006590 [Sorghum bicolor]
          Length = 570

 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 140/428 (32%), Positives = 227/428 (53%), Gaps = 16/428 (3%)

Query: 133 QAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVL 192
            A+ L+   R +G+ P+  T   V+  C A     L   +HG  ++  L  D  V  +++
Sbjct: 104 DALALYKRMRAAGVAPDHYTYPIVLPACAAARQPRLGRAVHGDAVRFALDGDGFVRCTLI 163

Query: 193 DMYSCLMDLDAAIQIFREME--CKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICD 250
            MY    ++  A  +F E     + V+SWT M+  +V   + G+AL +F  M    ++ +
Sbjct: 164 AMYFQEGEVADAELVFAESHGSSRTVVSWTAMVAGYVQNYFFGEALALFSTMVAEGVLPN 223

Query: 251 TVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFN 310
            + L++ +        L  G+ +H  V+  G  + + L+N++IAMY KCG +  + ++F 
Sbjct: 224 EITLISFLPCLQGQEWLDAGEMVHGFVIRSGFDANIPLANALIAMYGKCGSIPMAEALFE 283

Query: 311 QITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALE 370
            +  +SLVSW  +++ Y Q+G   EA+  F +M  EK    D +TLVS+L+A G   ALE
Sbjct: 284 GMAVRSLVSWNTMVAIYEQHGDVVEAIKFFHRMLTEKV-GFDCVTLVSVLSACGRSGALE 342

Query: 371 ICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGY 430
               +H  A   G      + N L+  Y+KCG +  A  VF+ +  +R VVSW+ +I  Y
Sbjct: 343 TGKWVHEFARSHGLDADARIGNVLVDMYAKCGEIADARKVFDCL-HVRGVVSWSAMISAY 401

Query: 431 GVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPS 490
             +G  E AL L+  M   G  P+S T+ ++L ACGH+GL N+GL  FN ++ + ++ P+
Sbjct: 402 ANHGDSEEALKLFCLMKSEGVRPNSFTFTAVLVACGHSGLVNEGLKHFNSILSDYQMSPT 461

Query: 491 QEHYGCVVDLLARAGCLSDASGLAGKLLEGMG--PN--IWRALLSGCVLH----VGRFQD 542
            EHY C+VD+L RAG L +A     +++ GM   P+  +W A L GC LH    +  F  
Sbjct: 462 LEHYACIVDMLGRAGRLVEAY----EIIRGMSLCPDKCVWGAFLGGCKLHSNLELAEFVA 517

Query: 543 AEALRSGS 550
            +  +SGS
Sbjct: 518 KDLFQSGS 525



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 122/504 (24%), Positives = 236/504 (46%), Gaps = 38/504 (7%)

Query: 24  AENLFDEIPEKNVVSWSIVIHGYSINGFHE--------KSMKAFSHMMLSGLLPNSFTMV 75
           A  +FD  P ++   W+ ++  ++ +  H          ++  +  M  +G+ P+ +T  
Sbjct: 66  ARRVFDAAPVRDAYMWNTLLRAHAHSHSHSQSSHSHAVDALALYKRMRAAGVAPDHYTYP 125

Query: 76  GVLVAAAGLQNLELARSIHGLMVKFGLESDLF-----------EGL-------------K 111
            VL A A  +   L R++HG  V+F L+ D F           EG               
Sbjct: 126 IVLPACAAARQPRLGRAVHGDAVRFALDGDGFVRCTLIAMYFQEGEVADAELVFAESHGS 185

Query: 112 NPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCEL 171
           +  +VS  A+VAG++ N  F +A+ LF+     G++PN +T+++ +            E+
Sbjct: 186 SRTVVSWTAMVAGYVQNYFFGEALALFSTMVAEGVLPNEITLISFLPCLQGQEWLDAGEM 245

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           +HG  I+ G   ++ + N+++ MY     +  A  +F  M  + ++SW  M+ ++     
Sbjct: 246 VHGFVIRSGFDANIPLANALIAMYGKCGSIPMAEALFEGMAVRSLVSWNTMVAIYEQHGD 305

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
             +A+K F  M   ++  D V L++++S     G L+ GK +H      GL ++ R+ N 
Sbjct: 306 VVEAIKFFHRMLTEKVGFDCVTLVSVLSACGRSGALETGKWVHEFARSHGLDADARIGNV 365

Query: 292 IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
           ++ MY+KCG++  +R VF+ +  + +VSW+A+IS Y  +G + EAL  F  M+ E     
Sbjct: 366 LVDMYAKCGEIADARKVFDCLHVRGVVSWSAMISAYANHGDSEEALKLFCLMKSEGVRP- 424

Query: 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN--CLISSYSKCGNVDLAYI 409
           +S T  ++L A G    +   L+ H  +  + +    ++++  C++    + G +  AY 
Sbjct: 425 NSFTFTAVLVACGHSGLVNEGLK-HFNSILSDYQMSPTLEHYACIVDMLGRAGRLVEAYE 483

Query: 410 VFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAG 469
           +   M    D   W   + G  ++ + E A  +   + ++G   D + Y+ + N    AG
Sbjct: 484 IIRGMSLCPDKCVWGAFLGGCKLHSNLELAEFVAKDLFQSGS-NDVTFYVLMSNMYFEAG 542

Query: 470 LTNDGLVIFNQMIEENKVKPSQEH 493
           +  D   I   M +E ++K +  H
Sbjct: 543 MLEDAERIRRAM-KEMELKKTAGH 565



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 155/339 (45%), Gaps = 41/339 (12%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEI--PEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           D +    L++ YF+ G++ +AE +F E     + VVSW+ ++ GY  N F  +++  FS 
Sbjct: 155 DGFVRCTLIAMYFQEGEVADAELVFAESHGSSRTVVSWTAMVAGYVQNYFFGEALALFST 214

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------- 105
           M+  G+LPN  T++  L    G + L+    +HG +++ G +++                
Sbjct: 215 MVAEGVLPNEITLISFLPCLQGQEWLDAGEMVHGFVIRSGFDANIPLANALIAMYGKCGS 274

Query: 106 ------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                 LFEG+    LVS N +VA +  +    +A+  F+      +  + VT+++V+  
Sbjct: 275 IPMAEALFEGMAVRSLVSWNTMVAIYEQHGDVVEAIKFFHRMLTEKVGFDCVTLVSVLSA 334

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C   G+    + +H      GL  D  + N ++DMY+   ++  A ++F  +  + V+SW
Sbjct: 335 CGRSGALETGKWVHEFARSHGLDADARIGNVLVDMYAKCGEIADARKVFDCLHVRGVVSW 394

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKS------------RIICDTVALLN--LISVNAILG 265
           + M+  + +   + +ALK+F  M+               + C    L+N  L   N+IL 
Sbjct: 395 SAMISAYANHGDSEEALKLFCLMKSEGVRPNSFTFTAVLVACGHSGLVNEGLKHFNSILS 454

Query: 266 DLKRGKQL-HAQVVLGGLQSELRLSNS--IIAMYSKCGD 301
           D +    L H   ++  L    RL  +  II   S C D
Sbjct: 455 DYQMSPTLEHYACIVDMLGRAGRLVEAYEIIRGMSLCPD 493



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 92/209 (44%), Gaps = 19/209 (9%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L+  Y K G+I +A  +FD +  + VVSWS +I  Y+ +G  E+++K F  M   G+ PN
Sbjct: 366 LVDMYAKCGEIADARKVFDCLHVRGVVSWSAMISAYANHGDSEEALKLFCLMKSEGVRPN 425

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKL 130
           SFT   VLVA             H  +V  GL+   F  + + Y +S        I + L
Sbjct: 426 SFTFTAVLVACG-----------HSGLVNEGLKH--FNSILSDYQMSPTLEHYACIVDML 472

Query: 131 FQQAVLL--FNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVN 188
            +   L+  +   RG  L P+       + GC    +  L E +     + G   DV+  
Sbjct: 473 GRAGRLVEAYEIIRGMSLCPDKCVWGAFLGGCKLHSNLELAEFVAKDLFQSGSN-DVTFY 531

Query: 189 NSVLDMY---SCLMDLDAAIQIFREMECK 214
             + +MY     L D +   +  +EME K
Sbjct: 532 VLMSNMYFEAGMLEDAERIRRAMKEMELK 560


>gi|302822426|ref|XP_002992871.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
 gi|300139319|gb|EFJ06062.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
          Length = 716

 Score =  227 bits (578), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 149/568 (26%), Positives = 267/568 (47%), Gaps = 62/568 (10%)

Query: 54  KSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL------- 106
           ++++ +  M   G++ + F +  ++ A   LQ LE  R +H  ++  G  +D+       
Sbjct: 13  QALELWGEMEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALL 72

Query: 107 ---------------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAV 151
                          FEG++   L + ++I+A +      + AV+L+      G+ PN V
Sbjct: 73  QMYAKCGSLDDAKRVFEGMEIKDLFAWSSIIAAYARAGRGEMAVVLYRRMIAEGVEPNVV 132

Query: 152 TMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM 211
           T    + GC ++   A    IH   +   +  D  + +S+L+MY    ++  A ++F  M
Sbjct: 133 TFACALGGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGM 192

Query: 212 ECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRII-CDTVALLNLISVNAILGDLKRG 270
           + ++V S+T M+  +V      +AL++F  M K   I  +      ++     LG+L++G
Sbjct: 193 KARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKG 252

Query: 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
           +++H  +   G  + + + N+++ MY KCG    +R VF+ +T ++++SWT++I+ Y Q+
Sbjct: 253 RKVHRHLASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQH 312

Query: 331 GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV 390
           G  +EALN F +M  E +     ++  S L A   L AL+   ++H    EA     + +
Sbjct: 313 GNPQEALNLFKRMDVEPS----GVSFSSALNACALLGALDEGREIHHRVVEANLASPQ-M 367

Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
           +  L+S Y++CG++D A  VF  M   RD  S N +I  +  +G  + AL +Y KM + G
Sbjct: 368 ETSLLSMYARCGSLDDARRVFNRMK-TRDAFSCNAMIAAFTQHGRKKQALRIYRKMEQEG 426

Query: 451 EVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
              D  T++S+L AC H  L  D       ++ ++ V P  EHY C+VD+L R+G L DA
Sbjct: 427 IPADGITFVSVLVACSHTSLVADCRDFLQSLVMDHGVVPLVEHYLCMVDVLGRSGRLGDA 486

Query: 511 SGLAGKLLEGMGPNIWRALLSGCVLH---------------------------------V 537
             L   +        W  LLSGC  H                                  
Sbjct: 487 EELVETMPYQADAVAWMTLLSGCKRHGDLDRGERAARKVFELAPAETLPYVFLSNMYAAA 546

Query: 538 GRFQDAEALRSGSQKKGIIKIPGISFLN 565
            RF DA  +R   +++G+ +   +S++ 
Sbjct: 547 KRFDDARRVRKEMEERGVTRPVAVSYIE 574



 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 127/509 (24%), Positives = 232/509 (45%), Gaps = 36/509 (7%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
            + LL  Y K G + +A+ +F+ +  K++ +WS +I  Y+  G  E ++  +  M+  G+
Sbjct: 68  ETALLQMYAKCGSLDDAKRVFEGMEIKDLFAWSSIIAAYARAGRGEMAVVLYRRMIAEGV 127

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
            PN  T    L   A +  L   R+IH  ++   +  D                      
Sbjct: 128 EPNVVTFACALGGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARK 187

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFF-RGSGLVPNAVTMLTVIRGCVALG 164
           +FEG+K   + S  A+++ ++      +A+ LF+   +   + PNA T  T++     LG
Sbjct: 188 VFEGMKARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLG 247

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
           +      +H      G   +V V N+++ MY        A ++F  M  ++VISWT M+ 
Sbjct: 248 NLEKGRKVHRHLASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIA 307

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            +       +AL +F+ M    +    V+  + ++  A+LG L  G+++H +VV   L S
Sbjct: 308 AYAQHGNPQEALNLFKRM---DVEPSGVSFSSALNACALLGALDEGREIHHRVVEANLAS 364

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
             ++  S+++MY++CG LD +R VFN++  +   S  A+I+ + Q+G  ++AL  + KM 
Sbjct: 365 P-QMETSLLSMYARCGSLDDARRVFNRMKTRDAFSCNAMIAAFTQHGRKKQALRIYRKME 423

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQ-LHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
           QE   + D IT VS+L A    + +  C   L  +  + G         C++    + G 
Sbjct: 424 QEGIPA-DGITFVSVLVACSHTSLVADCRDFLQSLVMDHGVVPLVEHYLCMVDVLGRSGR 482

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNG---HGETALALYHKMTETGEVPDSSTYLS 460
           +  A  + E M +  D V+W T++ G   +G    GE A     ++     +P    Y+ 
Sbjct: 483 LGDAEELVETMPYQADAVAWMTLLSGCKRHGDLDRGERAARKVFELAPAETLP----YVF 538

Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKP 489
           + N    A   +D   +  +M E    +P
Sbjct: 539 LSNMYAAAKRFDDARRVRKEMEERGVTRP 567


>gi|302812982|ref|XP_002988177.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
 gi|300143909|gb|EFJ10596.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
          Length = 742

 Score =  227 bits (578), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 152/547 (27%), Positives = 275/547 (50%), Gaps = 37/547 (6%)

Query: 23  EAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAA 82
           +A+  FD + ++N+ SW+ ++  ++I+G  +++++A   M   G+ P++ T +  L +  
Sbjct: 10  DAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCG 69

Query: 83  GLQNLELARSIHGLMVKFGLESD----------------------LFEGLKNPYLVSCNA 120
             ++L     IH ++V   LE D                      +F  ++    V   +
Sbjct: 70  DPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWS 129

Query: 121 IVAGF--INNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIK 178
           I+AG   ++  +++ A+  F F    G+      M+T++  C +        +IH     
Sbjct: 130 IMAGAHALHGNVWE-ALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRMIHSCIAL 188

Query: 179 LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME--CKDVISWTRMMGLFVDFEYAGDAL 236
            G   ++ V N+V+ MY     ++ A ++F  M+   +DV+SW  M+  +V  +   DA+
Sbjct: 189 SGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVHNDRGKDAI 248

Query: 237 KIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMY 296
           ++++ M+   +  D V  ++L+S  +   D+  G+ LH Q+V   L+  + + N++++MY
Sbjct: 249 QLYQRMQ---LRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMY 305

Query: 297 SKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ-EKTDS----- 350
           +KCG    +R+VF+++ ++S++SWT IIS YV+     EA + F +M + EK  S     
Sbjct: 306 AKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVK 365

Query: 351 VDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIV 410
            D++  V+IL A  +++ALE    +   A   G    ++V   +++ Y KCG ++ A  +
Sbjct: 366 PDALAFVTILNACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEARRI 425

Query: 411 FEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGL 470
           F+ +    DV  WN +I  Y   G    AL L+ +M   G  PDS +++SIL AC H GL
Sbjct: 426 FDAVCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILLACSHTGL 485

Query: 471 TNDGLVIFNQMIEENK-VKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRAL 529
            + G   F  M  E + V  + +H+GCV DLL R G L +A     KL        W +L
Sbjct: 486 EDQGKSYFTSMTTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSL 545

Query: 530 LSGCVLH 536
           L+ C  H
Sbjct: 546 LAACRNH 552



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 139/281 (49%), Gaps = 7/281 (2%)

Query: 295 MYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSI 354
           MY+ C     +++ F+ + +++L SWT +++ +  +G ++E L    +MRQ+     D++
Sbjct: 1   MYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRP-DAV 59

Query: 355 TLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM 414
           T ++ L + G+  +L   +++H +  ++       V N L++ Y KCG++  A  VF +M
Sbjct: 60  TFITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKM 119

Query: 415 GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDG 474
              R+V+SW+ +   + ++G+   AL  +  M   G     S  ++IL+AC    L  DG
Sbjct: 120 ERTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDG 179

Query: 475 LVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI-WRALLSGC 533
            +I +  I  +  +        V+ +  R G + +A  +   + E +   + W  +LS  
Sbjct: 180 RMI-HSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTY 238

Query: 534 VLHVGRFQDAEALRSGSQKKGIIKIPGISFLN--STSRDFG 572
           V H  R +DA  L    Q +   K+  +S L+  S++ D G
Sbjct: 239 V-HNDRGKDAIQLYQRMQLRP-DKVTYVSLLSACSSAEDVG 277



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 47/252 (18%), Positives = 98/252 (38%), Gaps = 43/252 (17%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM------- 63
           L+S Y K G   EA  +FD++ +++++SW+ +I  Y       ++   F  M+       
Sbjct: 301 LVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGS 360

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
              + P++   V +L A A +  LE  + +       GL SD                  
Sbjct: 361 SQRVKPDALAFVTILNACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIE 420

Query: 106 ----LFEGL-KNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
               +F+ +   P +   NA++A +       +A+ LF      G+ P++ + ++++  C
Sbjct: 421 EARRIFDAVCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILLAC 480

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMD-------LDAAIQIFREMEC 213
              G         G +    +  +       +  + C+ D       L  A +   ++  
Sbjct: 481 SHTGLED-----QGKSYFTSMTTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLPV 535

Query: 214 K-DVISWTRMMG 224
           K D ++WT ++ 
Sbjct: 536 KPDAVAWTSLLA 547


>gi|356529693|ref|XP_003533423.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Glycine max]
          Length = 676

 Score =  227 bits (578), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 149/446 (33%), Positives = 247/446 (55%), Gaps = 9/446 (2%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           LF+ L + ++V+ N++++  I++   ++AV  +      G++P+A T   + +    LG 
Sbjct: 57  LFDELPSRHIVTWNSMISSHISHGKSKEAVEFYGNMLMEGVLPDAYTFSAISKAFSQLGL 116

Query: 166 RALCELIHGLTIKLGL-ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
               +  HGL + LGL +LD  V ++++DMY+    +  A  +FR +  KDV+ +T ++ 
Sbjct: 117 IRHGQRAHGLAVVLGLEVLDGFVASALVDMYAKFDKMRDAHLVFRRVLEKDVVLFTALIV 176

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            +      G+ALKIF +M    +  +   L  ++     LGDL  G+ +H  VV  GL+S
Sbjct: 177 GYAQHGLDGEALKIFEDMVNRGVKPNEYTLACILINCGNLGDLVNGQLIHGLVVKSGLES 236

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
            +    S++ MYS+C  ++ S  VFNQ+   + V+WT+ + G VQNG    A++ F +M 
Sbjct: 237 VVASQTSLLTMYSRCNMIEDSIKVFNQLDYANQVTWTSFVVGLVQNGREEVAVSIFREMI 296

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
           +    S +  TL SIL A   LA LE+  Q+H I  + G    +     LI+ Y KCGN+
Sbjct: 297 RCSI-SPNPFTLSSILQACSSLAMLEVGEQIHAITMKLGLDGNKYAGAALINLYGKCGNM 355

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
           D A  VF+ +  L DVV+ N++IY Y  NG G  AL L+ ++   G VP+  T++SIL A
Sbjct: 356 DKARSVFDVLTEL-DVVAINSMIYAYAQNGFGHEALELFERLKNMGLVPNGVTFISILLA 414

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C +AGL  +G  IF  +   + ++ + +H+ C++DLL R+  L +A+ L   + E   P+
Sbjct: 415 CNNAGLVEEGCQIFASIRNNHNIELTIDHFTCMIDLLGRSRRLEEAAML---IEEVRNPD 471

Query: 525 I--WRALLSGCVLHVGRFQDAEALRS 548
           +  WR LL+ C +H G  + AE + S
Sbjct: 472 VVLWRTLLNSCKIH-GEVEMAEKVMS 496



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 138/513 (26%), Positives = 251/513 (48%), Gaps = 44/513 (8%)

Query: 10  KLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLP 69
           KL+  Y K G + EA  LFDE+P +++V+W+ +I  +  +G  +++++ + +M++ G+LP
Sbjct: 40  KLIDGYIKCGSLAEARKLFDELPSRHIVTWNSMISSHISHGKSKEAVEFYGNMLMEGVLP 99

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE----------SDL---FEGLKNPYLV 116
           +++T   +  A + L  +   +  HGL V  GLE           D+   F+ +++ +LV
Sbjct: 100 DAYTFSAISKAFSQLGLIRHGQRAHGLAVVLGLEVLDGFVASALVDMYAKFDKMRDAHLV 159

Query: 117 S----------CNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
                        A++ G+  + L  +A+ +F      G+ PN  T+  ++  C  LG  
Sbjct: 160 FRRVLEKDVVLFTALIVGYAQHGLDGEALKIFEDMVNRGVKPNEYTLACILINCGNLGDL 219

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
              +LIHGL +K GL   V+   S+L MYS    ++ +I++F +++  + ++WT  +   
Sbjct: 220 VNGQLIHGLVVKSGLESVVASQTSLLTMYSRCNMIEDSIKVFNQLDYANQVTWTSFVVGL 279

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
           V       A+ IFREM +  I  +   L +++   + L  L+ G+Q+HA  +  GL    
Sbjct: 280 VQNGREEVAVSIFREMIRCSISPNPFTLSSILQACSSLAMLEVGEQIHAITMKLGLDGNK 339

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
               ++I +Y KCG++D +RSVF+ +TE  +V+  ++I  Y QNG   EAL  F +++  
Sbjct: 340 YAGAALINLYGKCGNMDKARSVFDVLTELDVVAINSMIYAYAQNGFGHEALELFERLKNM 399

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN---------CLISS 397
                + +T +SIL A      +E   Q+        F   R+  N         C+I  
Sbjct: 400 GLVP-NGVTFISILLACNNAGLVEEGCQI--------FASIRNNHNIELTIDHFTCMIDL 450

Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457
             +   ++ A ++ EE+    DVV W T++    ++G  E A  +  K+ E     D  T
Sbjct: 451 LGRSRRLEEAAMLIEEVRN-PDVVLWRTLLNSCKIHGEVEMAEKVMSKILELAP-GDGGT 508

Query: 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPS 490
           ++ + N    AG  N  ++     I + K+K S
Sbjct: 509 HILLTNLYASAGKWNQ-VIEMKSTIRDLKLKKS 540



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 147/297 (49%), Gaps = 22/297 (7%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D + +S L+  Y K  K+++A  +F  + EK+VV ++ +I GY+ +G   +++K F  M
Sbjct: 135 LDGFVASALVDMYAKFDKMRDAHLVFRRVLEKDVVLFTALIVGYAQHGLDGEALKIFEDM 194

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES------------------ 104
           +  G+ PN +T+  +L+    L +L   + IHGL+VK GLES                  
Sbjct: 195 VNRGVKPNEYTLACILINCGNLGDLVNGQLIHGLVVKSGLESVVASQTSLLTMYSRCNMI 254

Query: 105 ----DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +F  L     V+  + V G + N   + AV +F       + PN  T+ ++++ C
Sbjct: 255 EDSIKVFNQLDYANQVTWTSFVVGLVQNGREEVAVSIFREMIRCSISPNPFTLSSILQAC 314

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
            +L    + E IH +T+KLGL  +     +++++Y    ++D A  +F  +   DV++  
Sbjct: 315 SSLAMLEVGEQIHAITMKLGLDGNKYAGAALINLYGKCGNMDKARSVFDVLTELDVVAIN 374

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
            M+  +    +  +AL++F  ++   ++ + V  ++++      G ++ G Q+ A +
Sbjct: 375 SMIYAYAQNGFGHEALELFERLKNMGLVPNGVTFISILLACNNAGLVEEGCQIFASI 431



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 112/229 (48%), Gaps = 4/229 (1%)

Query: 256 NLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK 315
           +LI+ +A    L   + +H  V+  G      L + +I  Y KCG L  +R +F+++  +
Sbjct: 6   SLIAQSAHTKSLTTLRAVHTNVIKSGFSYSF-LGHKLIDGYIKCGSLAEARKLFDELPSR 64

Query: 316 SLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQL 375
            +V+W ++IS ++ +G ++EA+  +  M  E     D+ T  +I  A  +L  +    + 
Sbjct: 65  HIVTWNSMISSHISHGKSKEAVEFYGNMLMEGVLP-DAYTFSAISKAFSQLGLIRHGQRA 123

Query: 376 HGIAFEAGFPRYRS-VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNG 434
           HG+A   G       V + L+  Y+K   +  A++VF  +   +DVV +  +I GY  +G
Sbjct: 124 HGLAVVLGLEVLDGFVASALVDMYAKFDKMRDAHLVFRRV-LEKDVVLFTALIVGYAQHG 182

Query: 435 HGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIE 483
               AL ++  M   G  P+  T   IL  CG+ G   +G +I   +++
Sbjct: 183 LDGEALKIFEDMVNRGVKPNEYTLACILINCGNLGDLVNGQLIHGLVVK 231


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 1135

 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 155/577 (26%), Positives = 283/577 (49%), Gaps = 49/577 (8%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ L++ Y K G +  A  +FD+IP+++ VSW+ +I         E S+  F  M+   +
Sbjct: 370 ANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCRFEEWELSLHLFRLMLSENV 429

Query: 68  LPNSFTMVGVLVAAAGLQN-LELARSIHG------------------LMVKFGLESD--- 105
            P SFT+V V  A + ++  + L + +H                   +  + G  +D   
Sbjct: 430 DPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNGDLRTYTNNALVTMYARLGRVNDAKA 489

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           LF       LVS N +++    N  F++A++        G+ P+ VT+ +V+  C  L  
Sbjct: 490 LFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLER 549

Query: 166 RALCELIHGLTIKLGLILDVS-VNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
             +   IH   ++ G +++ S V  +++DMY           +F  +  + V  W  ++ 
Sbjct: 550 LRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLA 609

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQ-LHAQVVLGGLQ 283
            +   E+   AL++F EM      C        +    +   +   K+ +H  +V  G  
Sbjct: 610 GYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDKEGIHGYIVKRGFG 669

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
            +  + N+++ MYS+ G ++ S+++F ++ ++ +VSW  +I+G +  G   +ALN   +M
Sbjct: 670 KDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCGRYDDALNLLHEM 729

Query: 344 -RQEKTDSVD----------------SITLVSILTASGELAALEICLQLHGIAFEAGFPR 386
            R++  D  D                S+TL+++L     LAAL    ++H  A +     
Sbjct: 730 QRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQKLAM 789

Query: 387 YRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM 446
             +V + L+  Y+KCG ++LA  VF++M  +R+V++WN +I  YG++G GE AL L+  M
Sbjct: 790 DVAVGSALVDMYAKCGCLNLASRVFDQMP-IRNVITWNVLIMAYGMHGKGEEALELFRIM 848

Query: 447 TETG----EV--PDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDL 500
           T  G    EV  P+  TY++I  AC H+G+ ++GL +F+ M   + V+P  +HY C+VDL
Sbjct: 849 TAGGGSNREVIRPNEVTYIAIFAACSHSGMVDEGLHLFHTMKASHGVEPRGDHYACLVDL 908

Query: 501 LARAGCLSDASGLAGKLLEGMGP-NIWRALLSGCVLH 536
           L R+G + +A  L   +   +   + W +LL  C +H
Sbjct: 909 LGRSGRVKEAYELINTMPSNLNKVDAWSSLLGACRIH 945



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 137/538 (25%), Positives = 244/538 (45%), Gaps = 72/538 (13%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y ++ L++ Y + G++ +A+ LF     K++VSW+ VI   S N   E+++     M++ 
Sbjct: 469 YTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVD 528

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG--LESD------------------ 105
           G+ P+  T+  VL A + L+ L + R IH   ++ G  +E+                   
Sbjct: 529 GVRPDGVTLASVLPACSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKK 588

Query: 106 ---LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLF-NFFRGSGLVPNAVTMLTVIRGCV 161
              +F+G+    +   NA++AG+  N+   QA+ LF      S   PNA T  +V+  CV
Sbjct: 589 GRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACV 648

Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
                +  E IHG  +K G   D  V N+++DMYS +  ++ +  IF  M  +D++SW  
Sbjct: 649 RCKVFSDKEGIHGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNT 708

Query: 222 MM-GLFVDFEYAGDALKIFREMRKSR------------------IICDTVALLNLISVNA 262
           M+ G  V   Y  DAL +  EM++ +                     ++V L+ ++   A
Sbjct: 709 MITGCIVCGRY-DDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCA 767

Query: 263 ILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTA 322
            L  L +GK++HA  V   L  ++ + ++++ MY+KCG L+ +  VF+Q+  +++++W  
Sbjct: 768 ALAALGKGKEIHAYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIRNVITWNV 827

Query: 323 IISGYVQNGCAREALNQFIKM-----RQEKTDSVDSITLVSILTASGELAALEICLQL-H 376
           +I  Y  +G   EAL  F  M        +    + +T ++I  A      ++  L L H
Sbjct: 828 LIMAYGMHGKGEEALELFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSGMVDEGLHLFH 887

Query: 377 GIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFLRDVVSWNTIIYGYGVNGH 435
            +    G         CL+    + G V  AY +   M   L  V +W++++        
Sbjct: 888 TMKASHGVEPRGDHYACLVDLLGRSGRVKEAYELINTMPSNLNKVDAWSSLL-------- 939

Query: 436 GETALALYHKMTETGEV---------PD-SSTYLSILNACGHAGLTNDGLVIFNQMIE 483
                   H+  E GE+         P+ +S Y+ + N    AGL +  L +  +M E
Sbjct: 940 ---GACRIHQSVEFGEIAAKHLFVLEPNVASHYVLMSNIYSSAGLWDQALGVRKKMKE 994



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 121/486 (24%), Positives = 218/486 (44%), Gaps = 47/486 (9%)

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFG------------------------LESD 105
           ++F    VL AAA + +L L + IH  + KFG                            
Sbjct: 329 DNFAFPAVLKAAAAVHDLCLGKQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQ 388

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL-G 164
           +F+ + +   VS N+++A     + ++ ++ LF       + P + T+++V   C  + G
Sbjct: 389 VFDDIPDRDHVSWNSMIATLCRFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRG 448

Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
              L + +H  T++ G  L    NN+++ MY+ L  ++ A  +F   + KD++SW  ++ 
Sbjct: 449 GVRLGKQVHAYTLRNG-DLRTYTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVIS 507

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG-LQ 283
                +   +AL     M    +  D V L +++   + L  L+ G+++H   +  G L 
Sbjct: 508 SLSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYALRNGDLI 567

Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
               +  +++ MY  C      R VF+ +  +++  W A+++GY +N    +AL  F++M
Sbjct: 568 ENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVEM 627

Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
             E     ++ T  S+L A            +HG   + GF + + VQN L+  YS+ G 
Sbjct: 628 ISESEFCPNATTFASVLPACVRCKVFSDKEGIHGYIVKRGFGKDKYVQNALMDMYSRMGR 687

Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMT-ETGE----------- 451
           V+++  +F  M   RD+VSWNT+I G  V G  + AL L H+M    GE           
Sbjct: 688 VEISKTIFGRMN-KRDIVSWNTMITGCIVCGRYDDALNLLHEMQRRQGEDGSDTFVDYED 746

Query: 452 ------VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAG 505
                  P+S T +++L  C        G  I    +++ K+         +VD+ A+ G
Sbjct: 747 DGGVPFKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQ-KLAMDVAVGSALVDMYAKCG 805

Query: 506 CLSDAS 511
           CL+ AS
Sbjct: 806 CLNLAS 811



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 112/409 (27%), Positives = 199/409 (48%), Gaps = 21/409 (5%)

Query: 155 TVIRGCVALGSRALCELIHGLTIKLGLIL--DVSVNNSVLDMYSCLMDLDAAIQIFREME 212
            V++   A+    L + IH    K G      V+V NS+++MY    DL AA Q+F ++ 
Sbjct: 335 AVLKAAAAVHDLCLGKQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIP 394

Query: 213 CKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLI-SVNAILGDLKRGK 271
            +D +SW  M+     FE    +L +FR M    +   +  L+++  + + + G ++ GK
Sbjct: 395 DRDHVSWNSMIATLCRFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGK 454

Query: 272 QLHAQVVLGGLQSELR--LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQ 329
           Q+HA  +  G   +LR   +N+++ MY++ G ++ ++++F     K LVSW  +IS   Q
Sbjct: 455 QVHAYTLRNG---DLRTYTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQ 511

Query: 330 NGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS 389
           N    EAL  ++ +        D +TL S+L A  +L  L I  ++H  A   G     S
Sbjct: 512 NDRFEEAL-MYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYALRNGDLIENS 570

Query: 390 -VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVS-WNTIIYGYGVNGHGETALALYHKMT 447
            V   L+  Y  C       +VF+  G +R  V+ WN ++ GY  N   + AL L+ +M 
Sbjct: 571 FVGTALVDMYCNCKQPKKGRLVFD--GVVRRTVAVWNALLAGYARNEFDDQALRLFVEMI 628

Query: 448 ETGEV-PDSSTYLSILNACGHAGLTNDGLVIFNQMIEE--NKVKPSQEHYGCVVDLLARA 504
              E  P+++T+ S+L AC    + +D   I   +++    K K  Q     ++D+ +R 
Sbjct: 629 SESEFCPNATTFASVLPACVRCKVFSDKEGIHGYIVKRGFGKDKYVQ---NALMDMYSRM 685

Query: 505 GCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKK 553
           G +  +  + G+ +       W  +++GC++  GR+ DA  L    Q++
Sbjct: 686 GRVEISKTIFGR-MNKRDIVSWNTMITGCIV-CGRYDDALNLLHEMQRR 732



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 116/237 (48%), Gaps = 10/237 (4%)

Query: 234 DALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG--LQSELRLSNS 291
           DA+  +  M  +    D  A   ++   A + DL  GKQ+HA V   G    S + ++NS
Sbjct: 313 DAISTYAAMLAAPAPPDNFAFPAVLKAAAAVHDLCLGKQIHAHVFKFGHAPPSSVAVANS 372

Query: 292 IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
           ++ MY KCGDL ++R VF+ I ++  VSW ++I+   +      +L+ F  M  E  D  
Sbjct: 373 LVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCRFEEWELSLHLFRLMLSENVDPT 432

Query: 352 DSITLVSILTASGEL-AALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIV 410
            S TLVS+  A   +   + +  Q+H      G  R  +  N L++ Y++ G V+ A  +
Sbjct: 433 -SFTLVSVAHACSHVRGGVRLGKQVHAYTLRNGDLRTYT-NNALVTMYARLGRVNDAKAL 490

Query: 411 FEEMGFL--RDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
           F   G    +D+VSWNT+I     N   E AL   + M   G  PD  T  S+L AC
Sbjct: 491 F---GVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPAC 544



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 50/246 (20%), Positives = 94/246 (38%), Gaps = 56/246 (22%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + L+  Y + G+++ ++ +F  + ++++VSW+ +I G  + G ++ ++     M 
Sbjct: 671 DKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCGRYDDALNLLHEMQ 730

Query: 64  LS------------------GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK------ 99
                                  PNS T++ VL   A L  L   + IH   VK      
Sbjct: 731 RRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQKLAMD 790

Query: 100 ----------------FGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRG 143
                             L S +F+ +    +++ N ++  +  +   ++A+ LF     
Sbjct: 791 VAVGSALVDMYAKCGCLNLASRVFDQMPIRNVITWNVLIMAYGMHGKGEEALELFRIMTA 850

Query: 144 SG------LVPNAVTMLTVIRGCVALG--SRALCELIHGLTIKLGLILDVSVNNSVLDMY 195
            G      + PN VT + +   C   G     L  L H +    G+           D Y
Sbjct: 851 GGGSNREVIRPNEVTYIAIFAACSHSGMVDEGL-HLFHTMKASHGV-------EPRGDHY 902

Query: 196 SCLMDL 201
           +CL+DL
Sbjct: 903 ACLVDL 908


>gi|15240444|ref|NP_198063.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635756|sp|O04659.2|PP398_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g27110
 gi|332006268|gb|AED93651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 157/552 (28%), Positives = 270/552 (48%), Gaps = 27/552 (4%)

Query: 11  LLSNYFKSGKIKEAENLFDEIP-EKNVVSWSIVIHGYSINGFHEKSMKAFSHMM-LSGLL 68
           L++ YF       A ++F+      +V  W+ ++ GYS N     +++ F  ++  S  +
Sbjct: 45  LINVYFTCKDHCSARHVFENFDIRSDVYIWNSLMSGYSKNSMFHDTLEVFKRLLNCSICV 104

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------------- 106
           P+SFT   V+ A   L    L R IH L+VK G   D+                      
Sbjct: 105 PDSFTFPNVIKAYGALGREFLGRMIHTLVVKSGYVCDVVVASSLVGMYAKFNLFENSLQV 164

Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
           F+ +    + S N +++ F  +   ++A+ LF     SG  PN+V++   I  C  L   
Sbjct: 165 FDEMPERDVASWNTVISCFYQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWL 224

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
              + IH   +K G  LD  VN++++DMY     L+ A ++F++M  K +++W  M+  +
Sbjct: 225 ERGKEIHRKCVKKGFELDEYVNSALVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGY 284

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
           V    +   ++I   M           L +++   +   +L  GK +H  V+   + +++
Sbjct: 285 VAKGDSKSCVEILNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKFIHGYVIRSVVNADI 344

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            ++ S+I +Y KCG+ + + +VF++  +    SW  +IS Y+  G   +A+  + +M   
Sbjct: 345 YVNCSLIDLYFKCGEANLAETVFSKTQKDVAESWNVMISSYISVGNWFKAVEVYDQMVSV 404

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
                D +T  S+L A  +LAALE   Q+H    E+       + + L+  YSKCGN   
Sbjct: 405 GVKP-DVVTFTSVLPACSQLAALEKGKQIHLSISESRLETDELLLSALLDMYSKCGNEKE 463

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           A+ +F  +   +DVVSW  +I  YG +G    AL  + +M + G  PD  T L++L+ACG
Sbjct: 464 AFRIFNSIP-KKDVVSWTVMISAYGSHGQPREALYQFDEMQKFGLKPDGVTLLAVLSACG 522

Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM-GPNI 525
           HAGL ++GL  F+QM  +  ++P  EHY C++D+L RAG L +A  +  +  E      +
Sbjct: 523 HAGLIDEGLKFFSQMRSKYGIEPIIEHYSCMIDILGRAGRLLEAYEIIQQTPETSDNAEL 582

Query: 526 WRALLSGCVLHV 537
              L S C LH+
Sbjct: 583 LSTLFSACCLHL 594



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 115/430 (26%), Positives = 213/430 (49%), Gaps = 26/430 (6%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           +S L+  Y K    + +  +FDE+PE++V SW+ VI  +  +G  EK+++ F  M  SG 
Sbjct: 145 ASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVISCFYQSGEAEKALELFGRMESSGF 204

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
            PNS ++   + A + L  LE  + IH   VK G E D                      
Sbjct: 205 EPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEYVNSALVDMYGKCDCLEVARE 264

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F+ +    LV+ N+++ G++     +  V + N     G  P+  T+ +++  C    +
Sbjct: 265 VFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQTTLTSILMACSRSRN 324

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI-SWTRMMG 224
               + IHG  I+  +  D+ VN S++D+Y    + + A  +F + + KDV  SW  M+ 
Sbjct: 325 LLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAETVFSKTQ-KDVAESWNVMIS 383

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            ++       A++++ +M    +  D V   +++   + L  L++GKQ+H  +    L++
Sbjct: 384 SYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSISESRLET 443

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
           +  L ++++ MYSKCG+   +  +FN I +K +VSWT +IS Y  +G  REAL QF +M 
Sbjct: 444 DELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQPREALYQFDEM- 502

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHG-IAFEAGFPRYRSVQNCLISSYSKCGN 403
           Q+     D +TL+++L+A G    ++  L+    +  + G        +C+I    + G 
Sbjct: 503 QKFGLKPDGVTLLAVLSACGHAGLIDEGLKFFSQMRSKYGIEPIIEHYSCMIDILGRAGR 562

Query: 404 VDLAYIVFEE 413
           +  AY + ++
Sbjct: 563 LLEAYEIIQQ 572



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/319 (27%), Positives = 164/319 (51%), Gaps = 5/319 (1%)

Query: 153 MLTVIRGCV-ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM 211
           +L+++R C  +  S    +L+H   + LGL  DV +  S++++Y    D  +A  +F   
Sbjct: 6   LLSLLRECTNSTKSLRRIKLVHQRILTLGLRRDVVLCKSLINVYFTCKDHCSARHVFENF 65

Query: 212 ECK-DVISWTRMMGLFVDFEYAGDALKIFREMRKSRI-ICDTVALLNLISVNAILGDLKR 269
           + + DV  W  +M  +       D L++F+ +    I + D+    N+I     LG    
Sbjct: 66  DIRSDVYIWNSLMSGYSKNSMFHDTLEVFKRLLNCSICVPDSFTFPNVIKAYGALGREFL 125

Query: 270 GKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQ 329
           G+ +H  VV  G   ++ +++S++ MY+K    ++S  VF+++ E+ + SW  +IS + Q
Sbjct: 126 GRMIHTLVVKSGYVCDVVVASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVISCFYQ 185

Query: 330 NGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS 389
           +G A +AL  F +M     +  +S++L   ++A   L  LE   ++H    + GF     
Sbjct: 186 SGEAEKALELFGRMESSGFEP-NSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEY 244

Query: 390 VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
           V + L+  Y KC  +++A  VF++M   + +V+WN++I GY   G  ++ + + ++M   
Sbjct: 245 VNSALVDMYGKCDCLEVAREVFQKMP-RKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIE 303

Query: 450 GEVPDSSTYLSILNACGHA 468
           G  P  +T  SIL AC  +
Sbjct: 304 GTRPSQTTLTSILMACSRS 322



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 159/337 (47%), Gaps = 23/337 (6%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D Y +S L+  Y K   ++ A  +F ++P K++V+W+ +I GY   G  +  ++  + M
Sbjct: 241 LDEYVNSALVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRM 300

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------- 106
           ++ G  P+  T+  +L+A +  +NL   + IHG +++  + +D+                
Sbjct: 301 IIEGTRPSQTTLTSILMACSRSRNLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEA 360

Query: 107 ------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                 F   +     S N +++ +I+   + +AV +++     G+ P+ VT  +V+  C
Sbjct: 361 NLAETVFSKTQKDVAESWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPAC 420

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             L +    + IH    +  L  D  + +++LDMYS   +   A +IF  +  KDV+SWT
Sbjct: 421 SQLAALEKGKQIHLSISESRLETDELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWT 480

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+  +       +AL  F EM+K  +  D V LL ++S     G +  G +  +Q+   
Sbjct: 481 VMISAYGSHGQPREALYQFDEMQKFGLKPDGVTLLAVLSACGHAGLIDEGLKFFSQMRSK 540

Query: 281 -GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKS 316
            G++  +   + +I +  + G L  +  +  Q  E S
Sbjct: 541 YGIEPIIEHYSCMIDILGRAGRLLEAYEIIQQTPETS 577



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 123/252 (48%), Gaps = 3/252 (1%)

Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVS-WTAIIS 325
           L+R K +H +++  GL+ ++ L  S+I +Y  C D  S+R VF     +S V  W +++S
Sbjct: 20  LRRIKLVHQRILTLGLRRDVVLCKSLINVYFTCKDHCSARHVFENFDIRSDVYIWNSLMS 79

Query: 326 GYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFP 385
           GY +N    + L  F ++        DS T  +++ A G L    +   +H +  ++G+ 
Sbjct: 80  GYSKNSMFHDTLEVFKRLLNCSICVPDSFTFPNVIKAYGALGREFLGRMIHTLVVKSGYV 139

Query: 386 RYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHK 445
               V + L+  Y+K    + +  VF+EM   RDV SWNT+I  +  +G  E AL L+ +
Sbjct: 140 CDVVVASSLVGMYAKFNLFENSLQVFDEMP-ERDVASWNTVISCFYQSGEAEKALELFGR 198

Query: 446 MTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAG 505
           M  +G  P+S +    ++AC        G  I  + +++   +  +     +VD+  +  
Sbjct: 199 MESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKG-FELDEYVNSALVDMYGKCD 257

Query: 506 CLSDASGLAGKL 517
           CL  A  +  K+
Sbjct: 258 CLEVAREVFQKM 269


>gi|302817788|ref|XP_002990569.1| hypothetical protein SELMODRAFT_131810 [Selaginella moellendorffii]
 gi|300141737|gb|EFJ08446.1| hypothetical protein SELMODRAFT_131810 [Selaginella moellendorffii]
          Length = 564

 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 155/545 (28%), Positives = 267/545 (48%), Gaps = 36/545 (6%)

Query: 15  YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM-LSGLLPNSFT 73
           Y K G ++EA  +F+ I   +  SW++++  Y  NG  +++++ F  M+ + G+  +  T
Sbjct: 2   YGKCGSVEEARAVFNSIKRSSCFSWNLMLGAYCNNGSGDQALELFKQMVDVHGIRADRVT 61

Query: 74  MVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY----------------- 114
            V    A + + +LE  +  H   V+ GLES L     L N Y                 
Sbjct: 62  FVTAATACSLVGSLEEGKQFHSRFVESGLESSLILDSALMNMYGRCGSAEEARKIFDRIP 121

Query: 115 ---LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCEL 171
              +V  N ++A +  N  F +A+ L+       L P+ VT L V+  C     R    L
Sbjct: 122 VKNVVCWNVMIAAYAQNGHFSEALELY---YDMNLKPDRVTFLNVLHACTLESGR----L 174

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           IH   +  GL  D  V N++++M+     L  A ++F  +  +DVISW  +M +++   +
Sbjct: 175 IHQDVVSAGLERDKFVGNALVNMFGKCGSLSDAKRVFDRIAFRDVISWNALMSVYIQQGH 234

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
             +A ++F+ M K+ +  ++V  L+L+   + L  L+   ++H ++   GL+ + ++ N+
Sbjct: 235 RKEAFELFKRMDKAGLQPNSVTYLSLLPACSSLEQLR---EIHQELADQGLEQDEQVGNT 291

Query: 292 IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
           +I  Y+K   L+ S +VF ++  +S+VSWT +I G V++G    AL+ + +M  E     
Sbjct: 292 LITAYNKFS-LEDSVAVFERMKRRSVVSWTCMIMGMVEHGYGGRALDLYREMVVEGVRP- 349

Query: 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVF 411
           D++ LV  L A   +  L    ++H +           V   +++ Y KCG    A  VF
Sbjct: 350 DAVALVCALDACTSVENLAEGRKIHRLVEGTTMVTDVFVATAVVNMYGKCGKFAEAEAVF 409

Query: 412 EEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLT 471
           + M     V +WN++I  Y  +GH   AL LY +M  +G  PD  T L  L AC H GL 
Sbjct: 410 QGMK-TTTVATWNSLIGAYAQHGHATDALKLYERMELSGTRPDGVTLLCALFACSHLGLL 468

Query: 472 NDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLS 531
           +     ++ M+E+ +V+    H+GC+VDL  RAG + +A  L   +      + W ALL+
Sbjct: 469 DRAREFYSGMVEDYQVEAVPAHFGCLVDLFCRAGWIDEAEELIASMPVRPHISAWTALLN 528

Query: 532 GCVLH 536
            C  H
Sbjct: 529 ACKAH 533



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 122/442 (27%), Positives = 215/442 (48%), Gaps = 35/442 (7%)

Query: 9   SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
           S L++ Y + G  +EA  +FD IP KNVV W+++I  Y+ NG   ++++ +  M L    
Sbjct: 98  SALMNMYGRCGSAEEARKIFDRIPVKNVVCWNVMIAAYAQNGHFSEALELYYDMNLK--- 154

Query: 69  PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPY------------ 114
           P+  T + VL A      LE  R IH  +V  GLE D F G  L N +            
Sbjct: 155 PDRVTFLNVLHAC----TLESGRLIHQDVVSAGLERDKFVGNALVNMFGKCGSLSDAKRV 210

Query: 115 --------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
                   ++S NA+++ +I     ++A  LF     +GL PN+VT L+++  C +L   
Sbjct: 211 FDRIAFRDVISWNALMSVYIQQGHRKEAFELFKRMDKAGLQPNSVTYLSLLPACSSL--E 268

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
            L E IH      GL  D  V N+++  Y+    L+ ++ +F  M+ + V+SWT M+   
Sbjct: 269 QLRE-IHQELADQGLEQDEQVGNTLITAYN-KFSLEDSVAVFERMKRRSVVSWTCMIMGM 326

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
           V+  Y G AL ++REM    +  D VAL+  +     + +L  G+++H  V    + +++
Sbjct: 327 VEHGYGGRALDLYREMVVEGVRPDAVALVCALDACTSVENLAEGRKIHRLVEGTTMVTDV 386

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            ++ +++ MY KCG    + +VF  +   ++ +W ++I  Y Q+G A +AL  + +M   
Sbjct: 387 FVATAVVNMYGKCGKFAEAEAVFQGMKTTTVATWNSLIGAYAQHGHATDALKLYERMELS 446

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLH-GIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
            T   D +TL+  L A   L  L+   + + G+  +       +   CL+  + + G +D
Sbjct: 447 GTRP-DGVTLLCALFACSHLGLLDRAREFYSGMVEDYQVEAVPAHFGCLVDLFCRAGWID 505

Query: 406 LAYIVFEEMGFLRDVVSWNTII 427
            A  +   M     + +W  ++
Sbjct: 506 EAEELIASMPVRPHISAWTALL 527



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 92/291 (31%), Positives = 152/291 (52%), Gaps = 18/291 (6%)

Query: 194 MYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSR-IICDTV 252
           MY     ++ A  +F  ++     SW  M+G + +      AL++F++M     I  D V
Sbjct: 1   MYGKCGSVEEARAVFNSIKRSSCFSWNLMLGAYCNNGSGDQALELFKQMVDVHGIRADRV 60

Query: 253 ALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQI 312
             +   +  +++G L+ GKQ H++ V  GL+S L L ++++ MY +CG  + +R +F++I
Sbjct: 61  TFVTAATACSLVGSLEEGKQFHSRFVESGLESSLILDSALMNMYGRCGSAEEARKIFDRI 120

Query: 313 TEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEIC 372
             K++V W  +I+ Y QNG   EAL  +  M  +     D +T +++L A      LE  
Sbjct: 121 PVKNVVCWNVMIAAYAQNGHFSEALELYYDMNLKP----DRVTFLNVLHA----CTLESG 172

Query: 373 LQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGV 432
             +H     AG  R + V N L++ + KCG++  A  VF+ + F RDV+SWN ++  Y  
Sbjct: 173 RLIHQDVVSAGLERDKFVGNALVNMFGKCGSLSDAKRVFDRIAF-RDVISWNALMSVYIQ 231

Query: 433 NGHGETALALYHKMTETGEVPDSSTYLSILNACG--------HAGLTNDGL 475
            GH + A  L+ +M + G  P+S TYLS+L AC         H  L + GL
Sbjct: 232 QGHRKEAFELFKRMDKAGLQPNSVTYLSLLPACSSLEQLREIHQELADQGL 282



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 166/347 (47%), Gaps = 28/347 (8%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  + L++ + K G + +A+ +FD I  ++V+SW+ ++  Y   G  +++ + F  M 
Sbjct: 187 DKFVGNALVNMFGKCGSLSDAKRVFDRIAFRDVISWNALMSVYIQQGHRKEAFELFKRMD 246

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
            +GL PNS T + +L A + L+ L   R IH  +   GLE D                  
Sbjct: 247 KAGLQPNSVTYLSLLPACSSLEQL---REIHQELADQGLEQDEQVGNTLITAYNKFSLED 303

Query: 106 ---LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA 162
              +FE +K   +VS   ++ G + +    +A+ L+      G+ P+AV ++  +  C +
Sbjct: 304 SVAVFERMKRRSVVSWTCMIMGMVEHGYGGRALDLYREMVVEGVRPDAVALVCALDACTS 363

Query: 163 LGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
           + + A    IH L     ++ DV V  +V++MY        A  +F+ M+   V +W  +
Sbjct: 364 VENLAEGRKIHRLVEGTTMVTDVFVATAVVNMYGKCGKFAEAEAVFQGMKTTTVATWNSL 423

Query: 223 MGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL 282
           +G +    +A DALK++  M  S    D V LL  +   + LG L R ++ ++ +V    
Sbjct: 424 IGAYAQHGHATDALKLYERMELSGTRPDGVTLLCALFACSHLGLLDRAREFYSGMV-EDY 482

Query: 283 QSELRLSN--SIIAMYSKCGDLDSSRSVFNQITEKSLVS-WTAIISG 326
           Q E   ++   ++ ++ + G +D +  +   +  +  +S WTA+++ 
Sbjct: 483 QVEAVPAHFGCLVDLFCRAGWIDEAEELIASMPVRPHISAWTALLNA 529



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 109/216 (50%), Gaps = 9/216 (4%)

Query: 295 MYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSI 354
           MY KCG ++ +R+VFN I   S  SW  ++  Y  NG   +AL  F +M        D +
Sbjct: 1   MYGKCGSVEEARAVFNSIKRSSCFSWNLMLGAYCNNGSGDQALELFKQMVDVHGIRADRV 60

Query: 355 TLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM 414
           T V+  TA   + +LE   Q H    E+G      + + L++ Y +CG+ + A  +F+ +
Sbjct: 61  TFVTAATACSLVGSLEEGKQFHSRFVESGLESSLILDSALMNMYGRCGSAEEARKIFDRI 120

Query: 415 GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDG 474
             +++VV WN +I  Y  NGH   AL LY+ M      PD  T+L++L+AC     T + 
Sbjct: 121 P-VKNVVCWNVMIAAYAQNGHFSEALELYYDMNLK---PDRVTFLNVLHAC-----TLES 171

Query: 475 LVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
             + +Q +    ++  +     +V++  + G LSDA
Sbjct: 172 GRLIHQDVVSAGLERDKFVGNALVNMFGKCGSLSDA 207


>gi|356565918|ref|XP_003551183.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Glycine max]
          Length = 703

 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 154/558 (27%), Positives = 272/558 (48%), Gaps = 33/558 (5%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           DPY ++ L+++Y K  ++  A  +FDE+P ++ VSW+ +I  ++ +G  + + +    M 
Sbjct: 27  DPYTANNLITSYAKCTELNSAHQVFDEMPHRDTVSWNAIISAFASSGDLDTTWQLLGAMR 86

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG------------LK 111
            S    +S T   +L   A +  L+L + +H +M+K GL  ++F G            + 
Sbjct: 87  RSTHAFDSRTFGSILKGVAYVGKLKLGQQLHSVMLKVGLSENVFSGSALLDMYAKCGRVD 146

Query: 112 NPYLV----------SCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVT---MLTVIR 158
           + Y+V          S N +VA +        A  + +     G+  +  T   +LT++ 
Sbjct: 147 DGYVVFQSMPERNYVSWNTLVASYSRVGDCDMAFWVLSCMELEGVEIDDGTVSPLLTLLD 206

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFR-EMECKDVI 217
             +      L   +H   +K GL L  +V N+ +  YS    L  A ++F   + C+D++
Sbjct: 207 NAMFY---KLTMQLHCKIVKHGLELFNTVCNATITAYSECCSLQDAERVFDGAVLCRDLV 263

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           +W  M+G ++  E    A K+F +M+      D      ++   ++      GK LH  V
Sbjct: 264 TWNSMLGAYLMHEKEDLAFKVFLDMQNFGFEPDAYTYTGIVGACSVQEHKTCGKCLHGLV 323

Query: 278 VLGGLQSELRLSNSIIAMYSKCGD--LDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
           +  GL + + +SN++I+MY +  D  ++ +  +F  +  K   +W +I++GYVQ G + +
Sbjct: 324 IKRGLDNSVPVSNALISMYIRFNDRCMEDALRIFFSMDLKDCCTWNSILAGYVQVGLSED 383

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLI 395
           AL  F++MR    + +D  T  +++ +  +LA L++  Q H +A + GF     V + LI
Sbjct: 384 ALRLFLQMRCLVIE-IDHYTFSAVIRSCSDLATLQLGQQFHVLALKVGFDTNSYVGSSLI 442

Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
             YSKCG ++ A   FE      + + WN+II+GY  +G G  AL L++ M E     D 
Sbjct: 443 FMYSKCGIIEDARKSFEATS-KDNAIVWNSIIFGYAQHGQGNIALDLFYMMKERKVKLDH 501

Query: 456 STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAG 515
            T++++L AC H GL  +G      M  +  + P QEHY C +DL  RAG L  A+ L  
Sbjct: 502 ITFVAVLTACSHNGLVEEGCNFIESMESDFGIPPRQEHYACAIDLYGRAGHLKKATALVE 561

Query: 516 KLLEGMGPNIWRALLSGC 533
            +       + + LL  C
Sbjct: 562 TMPFEPDAMVLKTLLGAC 579



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 149/293 (50%), Gaps = 1/293 (0%)

Query: 173 HGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYA 232
           H   IKLG I D    N+++  Y+   +L++A Q+F EM  +D +SW  ++  F      
Sbjct: 16  HCRAIKLGSIADPYTANNLITSYAKCTELNSAHQVFDEMPHRDTVSWNAIISAFASSGDL 75

Query: 233 GDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSI 292
               ++   MR+S    D+    +++   A +G LK G+QLH+ ++  GL   +   +++
Sbjct: 76  DTTWQLLGAMRRSTHAFDSRTFGSILKGVAYVGKLKLGQQLHSVMLKVGLSENVFSGSAL 135

Query: 293 IAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVD 352
           + MY+KCG +D    VF  + E++ VSW  +++ Y + G    A      M  E  + +D
Sbjct: 136 LDMYAKCGRVDDGYVVFQSMPERNYVSWNTLVASYSRVGDCDMAFWVLSCMELEGVE-ID 194

Query: 353 SITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFE 412
             T+  +LT        ++ +QLH    + G   + +V N  I++YS+C ++  A  VF+
Sbjct: 195 DGTVSPLLTLLDNAMFYKLTMQLHCKIVKHGLELFNTVCNATITAYSECCSLQDAERVFD 254

Query: 413 EMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
                RD+V+WN+++  Y ++   + A  ++  M   G  PD+ TY  I+ AC
Sbjct: 255 GAVLCRDLVTWNSMLGAYLMHEKEDLAFKVFLDMQNFGFEPDAYTYTGIVGAC 307


>gi|255546193|ref|XP_002514156.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546612|gb|EEF48110.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 885

 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 145/501 (28%), Positives = 250/501 (49%), Gaps = 24/501 (4%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D +  S L+  Y K G+++ A+ +F  +PEKN VSW+ +++GY+  G  +  +K F  M
Sbjct: 227 LDLFVGSALVDLYAKFGEMELADRVFFGMPEKNNVSWNALLNGYAQRGDGKNVLKLFCRM 286

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG------------- 109
           +   +   ++T+  VL   A   NL   +++H L ++   E D F G             
Sbjct: 287 LECEMNFTNYTLSTVLKGCANSGNLREGKALHSLSIRRAYELDEFLGCNLVDMYSKCGMA 346

Query: 110 ---------LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                    ++ P +V+ +AI+ G       Q+A  LF+  R  G+ PN  +  +VI   
Sbjct: 347 YEALKVFNMIEEPDIVAWSAIITGLDQQGHSQEAAELFHLMRQKGVRPNQFSFASVISAA 406

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             +G   L + IH    K G   D SV N+++ MY     +   I++F  M  +D++SW 
Sbjct: 407 TNVGDLYLGQSIHCCICKYGYESDNSVGNALITMYMKSGFVQDGIRVFDTMTNRDLVSWN 466

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            ++  F DFE +   L+IF +M    ++ +    + ++   + L ++  GKQ+HA ++  
Sbjct: 467 ALLSGFYDFETSDQGLRIFCQMLMEGLVPNLYTFVGVLRSCSSLLNVWFGKQVHAHIIKN 526

Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
            L     +  ++I MY+K   L+ +   FN++T + L +WT II+G+ Q   A +A+   
Sbjct: 527 SLDGNDFVGTALIDMYAKNRCLEDADVAFNKLTNRDLFTWTVIIAGHSQTDKAEKAVKYL 586

Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
            +M +E     +  TL S L+    +A L    QLH +A ++G      V + L+  Y K
Sbjct: 587 GQMLREGIKP-NEFTLASCLSGCSRMATLGNGQQLHSLAIKSGHSGDVFVSSALVDMYGK 645

Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
           CG ++ A  +F+ + F RD V+WNTII GY  +G G+ AL  +  M +    PD  T++ 
Sbjct: 646 CGCMEDAEAIFKGL-FSRDTVAWNTIICGYSQHGQGQKALEAFRMMLDEDIDPDEVTFIG 704

Query: 461 ILNACGHAGLTNDGLVIFNQM 481
           +L AC + G   +G   F+ M
Sbjct: 705 VLAACSYMGWVEEGKKHFDLM 725



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 136/499 (27%), Positives = 235/499 (47%), Gaps = 40/499 (8%)

Query: 76  GVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFEGLKNP 113
           G+L   A   NL    +IHG ++K GLE D                      +  G++  
Sbjct: 98  GMLRECASKGNLNEGTAIHGNVIKSGLEPDSHLWVSLINLYAKCGSLAFARKVLVGMRER 157

Query: 114 YLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIH 173
            +VS  A++AG+++       V  +   R   + PN  T+ TV++           +LIH
Sbjct: 158 DVVSWTALIAGYVSEGCGSDGVKAYCEMRKENICPNEFTLATVLKASSMCSDIKFGKLIH 217

Query: 174 GLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAG 233
              IK GL+LD+ V ++++D+Y+   +++ A ++F  M  K+ +SW  ++  +       
Sbjct: 218 LEAIKTGLLLDLFVGSALVDLYAKFGEMELADRVFFGMPEKNNVSWNALLNGYAQRGDGK 277

Query: 234 DALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSII 293
           + LK+F  M +  +      L  ++   A  G+L+ GK LH+  +    + +  L  +++
Sbjct: 278 NVLKLFCRMLECEMNFTNYTLSTVLKGCANSGNLREGKALHSLSIRRAYELDEFLGCNLV 337

Query: 294 AMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDS 353
            MYSKCG    +  VFN I E  +V+W+AII+G  Q G ++EA   F  MRQ K    + 
Sbjct: 338 DMYSKCGMAYEALKVFNMIEEPDIVAWSAIITGLDQQGHSQEAAELFHLMRQ-KGVRPNQ 396

Query: 354 ITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEE 413
            +  S+++A+  +  L +   +H    + G+    SV N LI+ Y K G V     VF+ 
Sbjct: 397 FSFASVISAATNVGDLYLGQSIHCCICKYGYESDNSVGNALITMYMKSGFVQDGIRVFDT 456

Query: 414 MGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTND 473
           M   RD+VSWN ++ G+      +  L ++ +M   G VP+  T++ +L +C  + L N 
Sbjct: 457 MTN-RDLVSWNALLSGFYDFETSDQGLRIFCQMLMEGLVPNLYTFVGVLRSC--SSLLN- 512

Query: 474 GLVIFNQMIEENKVKPSQEHYGCV----VDLLARAGCLSDASGLAGKLLEGMGPNIWRAL 529
             V F + +  + +K S +    V    +D+ A+  CL DA     KL         R L
Sbjct: 513 --VWFGKQVHAHIIKNSLDGNDFVGTALIDMYAKNRCLEDADVAFNKLTN-------RDL 563

Query: 530 LSGCVLHVGRFQDAEALRS 548
            +  V+  G  Q  +A ++
Sbjct: 564 FTWTVIIAGHSQTDKAEKA 582



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 145/567 (25%), Positives = 255/567 (44%), Gaps = 42/567 (7%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           L++ Y K G +  A  +   + E++VVSW+ +I GY   G     +KA+  M    + PN
Sbjct: 134 LINLYAKCGSLAFARKVLVGMRERDVVSWTALIAGYVSEGCGSDGVKAYCEMRKENICPN 193

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFE---------------------- 108
            FT+  VL A++   +++  + IH   +K GL  DLF                       
Sbjct: 194 EFTLATVLKASSMCSDIKFGKLIHLEAIKTGLLLDLFVGSALVDLYAKFGEMELADRVFF 253

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
           G+     VS NA++ G+      +  + LF       +     T+ TV++GC   G+   
Sbjct: 254 GMPEKNNVSWNALLNGYAQRGDGKNVLKLFCRMLECEMNFTNYTLSTVLKGCANSGNLRE 313

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYS-CLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
            + +H L+I+    LD  +  +++DMYS C M  + A+++F  +E  D+++W+ ++    
Sbjct: 314 GKALHSLSIRRAYELDEFLGCNLVDMYSKCGMAYE-ALKVFNMIEEPDIVAWSAIITGLD 372

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
              ++ +A ++F  MR+  +  +  +  ++IS    +GDL  G+ +H  +   G +S+  
Sbjct: 373 QQGHSQEAAELFHLMRQKGVRPNQFSFASVISAATNVGDLYLGQSIHCCICKYGYESDNS 432

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
           + N++I MY K G +     VF+ +T + LVSW A++SG+     + + L  F +M  E 
Sbjct: 433 VGNALITMYMKSGFVQDGIRVFDTMTNRDLVSWNALLSGFYDFETSDQGLRIFCQMLMEG 492

Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
               +  T V +L +   L  +    Q+H    +        V   LI  Y+K   ++ A
Sbjct: 493 L-VPNLYTFVGVLRSCSSLLNVWFGKQVHAHIIKNSLDGNDFVGTALIDMYAKNRCLEDA 551

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
            + F ++   RD+ +W  II G+      E A+    +M   G  P+  T  S L+ C  
Sbjct: 552 DVAFNKLTN-RDLFTWTVIIAGHSQTDKAEKAVKYLGQMLREGIKPNEFTLASCLSGCSR 610

Query: 468 AGLTNDGLVIFNQMIEENKVKPSQEHYGCV------VDLLARAGCLSDASGLAGKLLEGM 521
                +G  + +  I+         H G V      VD+  + GC+ DA  +  K L   
Sbjct: 611 MATLGNGQQLHSLAIKSG-------HSGDVFVSSALVDMYGKCGCMEDAEAIF-KGLFSR 662

Query: 522 GPNIWRALLSGCVLHVGRFQDA-EALR 547
               W  ++ G   H G+ Q A EA R
Sbjct: 663 DTVAWNTIICGYSQH-GQGQKALEAFR 688



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 56/96 (58%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D + SS L+  Y K G +++AE +F  +  ++ V+W+ +I GYS +G  +K+++AF  M+
Sbjct: 632 DVFVSSALVDMYGKCGCMEDAEAIFKGLFSRDTVAWNTIICGYSQHGQGQKALEAFRMML 691

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK 99
              + P+  T +GVL A + +  +E  +    LM K
Sbjct: 692 DEDIDPDEVTFIGVLAACSYMGWVEEGKKHFDLMSK 727


>gi|224145077|ref|XP_002325518.1| predicted protein [Populus trichocarpa]
 gi|222862393|gb|EEE99899.1| predicted protein [Populus trichocarpa]
          Length = 678

 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 150/523 (28%), Positives = 262/523 (50%), Gaps = 28/523 (5%)

Query: 9   SKLLSNYFKSGKIKEAENLFDE-IPEKNVVSWSIVIHGYSINGFHE--KSMKAFSHMMLS 65
           +KL+  Y   G I++A+++FDE      V  W+ +I G  I+G       + A+  M ++
Sbjct: 142 TKLVHMYTSCGSIEDAKSVFDECTSTATVYPWNALIRGTVISGKKRYGDVLSAYQEMRVN 201

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES--------------------- 104
           G+  N +T   V+ + AG   L+     H +M+K G+ S                     
Sbjct: 202 GVELNEYTFSNVIKSFAGASALKQGFKTHAIMIKNGMISSAVLRTCLIDMYFKCGKTRLA 261

Query: 105 -DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
            ++FE L    +V+  A++AGF +N+   +A+    +    G+ PN+V + +++     +
Sbjct: 262 HNVFEELLERDIVAWGAMIAGFAHNRRQWEALDYVRWMVSEGMYPNSVIITSILPVIGEV 321

Query: 164 GSRALCELIHGLTIKL-GLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM 222
            +R L + +H   +K+ G   ++S+ + ++DMY    D+ +  ++F     ++V+SWT +
Sbjct: 322 WARRLGQEVHCYVLKMKGYSRELSIQSGLIDMYCKCGDMGSGRRVFYGSRERNVVSWTAL 381

Query: 223 MGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL 282
           M  +V       AL+    M++     D V +  +I V A L  LK GK++HA  V    
Sbjct: 382 MSGYVSNGRLEQALRSVVWMQQEGCRPDVVTVATVIPVCAKLKTLKHGKEIHAFSVKKLF 441

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
              + L+ S+I MYSKCG LD S  +F+ +  +++++WTA+I  YV+NGC  EA N F  
Sbjct: 442 LPNVSLTTSLIKMYSKCGVLDYSVKLFDGMEARNVIAWTAMIDSYVENGCINEAFNVFRF 501

Query: 343 MRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
           M+  K    DS+T+  +L+   ++  L+   ++HG   +  F     V + L+  Y  CG
Sbjct: 502 MQWSK-HRPDSVTMARMLSICSKIKTLKFGKEIHGHILKKDFESIPFVSSELVKMYGSCG 560

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
            V  A  VF  +  ++  ++W  II  YG N   + A+ L+ +M      P+  T+  +L
Sbjct: 561 LVHSAESVFNAVP-VKGSMTWTAIIEAYGYNSLWQDAIKLFDEMRSRKFTPNDFTFKVVL 619

Query: 463 NACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAG 505
           + C  AG  +D   IF  M +  KVK S +HY  ++ LL R+G
Sbjct: 620 SICDEAGFADDACRIFELMSKRYKVKISGDHYAIIIGLLNRSG 662



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 117/489 (23%), Positives = 224/489 (45%), Gaps = 21/489 (4%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEK----NVVSWSIVIHGYSINGFHEKSMKAF 59
           +P    K +  + +  ++K+A  + D + ++    N  ++S +I     +    K+ +  
Sbjct: 67  NPQAIYKDIQRFSRKNQLKDALIIMDYMDQQGIPVNPTTFSALIAACIRSKSLTKAKEIH 126

Query: 60  SHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCN 119
           +H+ ++GL  N F    ++       ++E A+S+              E      +   N
Sbjct: 127 THLRINGLQNNEFLRTKLVHMYTSCGSIEDAKSVFD------------ECTSTATVYPWN 174

Query: 120 AIVAGFI--NNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTI 177
           A++ G +    K +   +  +   R +G+  N  T   VI+      +       H + I
Sbjct: 175 ALIRGTVISGKKRYGDVLSAYQEMRVNGVELNEYTFSNVIKSFAGASALKQGFKTHAIMI 234

Query: 178 KLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALK 237
           K G+I    +   ++DMY        A  +F E+  +D+++W  M+  F       +AL 
Sbjct: 235 KNGMISSAVLRTCLIDMYFKCGKTRLAHNVFEELLERDIVAWGAMIAGFAHNRRQWEALD 294

Query: 238 IFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV-LGGLQSELRLSNSIIAMY 296
             R M    +  ++V + +++ V   +   + G+++H  V+ + G   EL + + +I MY
Sbjct: 295 YVRWMVSEGMYPNSVIITSILPVIGEVWARRLGQEVHCYVLKMKGYSRELSIQSGLIDMY 354

Query: 297 SKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITL 356
            KCGD+ S R VF    E+++VSWTA++SGYV NG   +AL   + M+QE     D +T+
Sbjct: 355 CKCGDMGSGRRVFYGSRERNVVSWTALMSGYVSNGRLEQALRSVVWMQQEGCRP-DVVTV 413

Query: 357 VSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGF 416
            +++    +L  L+   ++H  + +  F    S+   LI  YSKCG +D +  +F+ M  
Sbjct: 414 ATVIPVCAKLKTLKHGKEIHAFSVKKLFLPNVSLTTSLIKMYSKCGVLDYSVKLFDGME- 472

Query: 417 LRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLV 476
            R+V++W  +I  Y  NG    A  ++  M  +   PDS T   +L+ C        G  
Sbjct: 473 ARNVIAWTAMIDSYVENGCINEAFNVFRFMQWSKHRPDSVTMARMLSICSKIKTLKFGKE 532

Query: 477 IFNQMIEEN 485
           I   +++++
Sbjct: 533 IHGHILKKD 541



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 114/455 (25%), Positives = 204/455 (44%), Gaps = 24/455 (5%)

Query: 111 KNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCE 170
           KNP  +  +  +  F      + A+++ ++    G+  N  T   +I  C+   S    +
Sbjct: 66  KNPQAIYKD--IQRFSRKNQLKDALIIMDYMDQQGIPVNPTTFSALIAACIRSKSLTKAK 123

Query: 171 LIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFRE-MECKDVISWTRMM--GLFV 227
            IH      GL  +  +   ++ MY+    ++ A  +F E      V  W  ++   +  
Sbjct: 124 EIHTHLRINGLQNNEFLRTKLVHMYTSCGSIEDAKSVFDECTSTATVYPWNALIRGTVIS 183

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
             +  GD L  ++EMR + +  +     N+I   A    LK+G + HA ++  G+ S   
Sbjct: 184 GKKRYGDVLSAYQEMRVNGVELNEYTFSNVIKSFAGASALKQGFKTHAIMIKNGMISSAV 243

Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
           L   +I MY KCG    + +VF ++ E+ +V+W A+I+G+  N    EAL+ +++    +
Sbjct: 244 LRTCLIDMYFKCGKTRLAHNVFEELLERDIVAWGAMIAGFAHNRRQWEALD-YVRWMVSE 302

Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFE-AGFPRYRSVQNCLISSYSKCGNVDL 406
               +S+ + SIL   GE+ A  +  ++H    +  G+ R  S+Q+ LI  Y KCG++  
Sbjct: 303 GMYPNSVIITSILPVIGEVWARRLGQEVHCYVLKMKGYSRELSIQSGLIDMYCKCGDMGS 362

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
              VF      R+VVSW  ++ GY  NG  E AL     M + G  PD  T  +++  C 
Sbjct: 363 GRRVFYG-SRERNVVSWTALMSGYVSNGRLEQALRSVVWMQQEGCRPDVVTVATVIPVCA 421

Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM-GPNI 525
                  G  I    +++  + P+      ++ + ++ G L      + KL +GM   N+
Sbjct: 422 KLKTLKHGKEIHAFSVKKLFL-PNVSLTTSLIKMYSKCGVLD----YSVKLFDGMEARNV 476

Query: 526 --WRALL-----SGCV---LHVGRFQDAEALRSGS 550
             W A++     +GC+    +V RF      R  S
Sbjct: 477 IAWTAMIDSYVENGCINEAFNVFRFMQWSKHRPDS 511



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 78/179 (43%), Gaps = 22/179 (12%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           ++ L+  Y K G +  +  LFD +  +NV++W+ +I  Y  NG   ++   F  M  S  
Sbjct: 448 TTSLIKMYSKCGVLDYSVKLFDGMEARNVIAWTAMIDSYVENGCINEAFNVFRFMQWSKH 507

Query: 68  LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF------------------EG 109
            P+S TM  +L   + ++ L+  + IHG ++K   ES  F                  E 
Sbjct: 508 RPDSVTMARMLSICSKIKTLKFGKEIHGHILKKDFESIPFVSSELVKMYGSCGLVHSAES 567

Query: 110 LKNPYLV----SCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
           + N   V    +  AI+  +  N L+Q A+ LF+  R     PN  T   V+  C   G
Sbjct: 568 VFNAVPVKGSMTWTAIIEAYGYNSLWQDAIKLFDEMRSRKFTPNDFTFKVVLSICDEAG 626



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 39/74 (52%)

Query: 5   PYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML 64
           P+ SS+L+  Y   G +  AE++F+ +P K  ++W+ +I  Y  N   + ++K F  M  
Sbjct: 546 PFVSSELVKMYGSCGLVHSAESVFNAVPVKGSMTWTAIIEAYGYNSLWQDAIKLFDEMRS 605

Query: 65  SGLLPNSFTMVGVL 78
               PN FT   VL
Sbjct: 606 RKFTPNDFTFKVVL 619


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 151/493 (30%), Positives = 252/493 (51%), Gaps = 45/493 (9%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F  L+NP     N+++    ++K   +A+ L++    SGL P+ +T   VI+ C     
Sbjct: 151 IFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNESSV 210

Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
                L+H   +K G   D  + +S++ +Y+   DL AA Q+F     +DV+SW  M+  
Sbjct: 211 TWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDG 270

Query: 226 FVDFEYAGDALKIFREMRKSRIIC-DTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
           +V     G A  +F      R++C D ++   +I+  AI+G +   K+L  ++    L S
Sbjct: 271 YVKHVEMGHARMVF-----DRMVCRDVISWNTMINGYAIVGKIDEAKRLFDEMPERNLVS 325

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
                NS++A + KCG+++ +  +F+++  + +VSW ++++ Y Q G   EAL  F +MR
Sbjct: 326 ----WNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMR 381

Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
                  ++ T+VS+L+A   L AL+  L LH    +        V   L+  Y+KCG +
Sbjct: 382 AVGVKPTEA-TVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKI 440

Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
            LA  VF  M   +DV++WNTII G  ++G+ + A  L+ +M E G  P+  T+++IL+A
Sbjct: 441 SLATQVFNAMES-KDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSA 499

Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
           C HAG+ ++G  + + M     ++P  EHYGCV+DLLARAG L +A  L G +     P+
Sbjct: 500 CSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPS 559

Query: 525 IWRALLSGCVLH--------VG-------------------------RFQDAEALRSGSQ 551
              ALL GC +H        VG                         ++ DA  +R+  +
Sbjct: 560 ALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMK 619

Query: 552 KKGIIKIPGISFL 564
             GI K+PG+S +
Sbjct: 620 VNGISKVPGVSVI 632



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 129/263 (49%), Gaps = 17/263 (6%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           ++  Y K  ++  A  +FD +  ++V+SW+ +I+GY+I G  +++ + F  M    L+  
Sbjct: 267 MIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAIVGKIDEAKRLFDEMPERNLVSW 326

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKL 130
           +  + G +       N+E A         FG    LF  +    +VS N+++A +     
Sbjct: 327 NSMLAGFVKCG----NVEDA---------FG----LFSEMPCRDVVSWNSMLACYAQCGK 369

Query: 131 FQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNS 190
             +A+ LF+  R  G+ P   T+++++  C  LG+      +H       + ++  V  +
Sbjct: 370 PNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTA 429

Query: 191 VLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICD 250
           ++DMY+    +  A Q+F  ME KDV++W  ++          +A ++F+EM+++ +  +
Sbjct: 430 LVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPN 489

Query: 251 TVALLNLISVNAILGDLKRGKQL 273
            +  + ++S  +  G +  G++L
Sbjct: 490 DITFVAILSACSHAGMVDEGQKL 512


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 173/612 (28%), Positives = 300/612 (49%), Gaps = 97/612 (15%)

Query: 27  LFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQN 86
           +FD I   N   W+ ++  Y  +   EK++  +  M+ + + P+++T   ++V A  ++ 
Sbjct: 97  IFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYT-YPLVVQACAVRL 155

Query: 87  LELA-RSIHGLMVKFGLESDLF--EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRG 143
           LE   + IH  ++K G +SD++    L N Y V  N   A     KLF ++ +L      
Sbjct: 156 LEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDA----RKLFDESPVL------ 205

Query: 144 SGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDA 203
                ++V+  +++ G V  G     +LI     +  ++     +NS++ +   +  +  
Sbjct: 206 -----DSVSWNSILAGYVKKGDVEEAKLIFDQMPQRNIV----ASNSMIVLLGKMGQVME 256

Query: 204 AIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAI 263
           A ++F EM+ KD++SW+ ++  +       +AL +F EM  + +  D V +++++S  A 
Sbjct: 257 AWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAH 316

Query: 264 LGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYS-------------------------- 297
           L  +K GK +H  V+  G++S + L N++I MYS                          
Sbjct: 317 LSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSM 376

Query: 298 -----KCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVD 352
                KCG ++ +R++F+ + EK +VSW+A+ISGY Q+ C  E L  F +M+  +    D
Sbjct: 377 ISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRP-D 435

Query: 353 SITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFE 412
              LVS+++A   LAAL+    +H    + G      +   L+  Y KCG V+ A  VF 
Sbjct: 436 ETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFN 495

Query: 413 EMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTN 472
            M   + V SWN +I G  VNG  E +L ++ +M   G +P+  T++ +L AC H GL +
Sbjct: 496 GME-EKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVD 554

Query: 473 DGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG--MGPNI--WRA 528
           +G   F  MIE++ ++P+ +HYGC+VDLL RAG L++A     KL+E   M P++  W A
Sbjct: 555 EGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAE----KLIESMPMAPDVATWGA 610

Query: 529 LLSGCVLH--------VGR-------------------------FQDAEALRSGSQKKGI 555
           LL  C  H        VGR                         ++D   +R   +++G+
Sbjct: 611 LLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGV 670

Query: 556 IKIPGISFLNST 567
           +K PG S + + 
Sbjct: 671 VKTPGCSLIEAN 682



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 138/562 (24%), Positives = 255/562 (45%), Gaps = 78/562 (13%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + L++ Y   G +++A  LFDE P  + VSW+ ++ GY   G  E++   F  M 
Sbjct: 175 DVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEAKLIFDQMP 234

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVA 123
              ++  S +M+ VL+   G Q +E  +              LF  +    +VS +A+++
Sbjct: 235 QRNIVA-SNSMI-VLLGKMG-QVMEAWK--------------LFNEMDEKDMVSWSALIS 277

Query: 124 GFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLIL 183
           G+  N ++++A+++F     +G+  + V +++V+  C  L      ++IHGL I++G+  
Sbjct: 278 GYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIES 337

Query: 184 DVSVNNSVLDMYSC---LMD----------------------------LDAAIQIFREME 212
            V++ N+++ MYS    +MD                            ++ A  +F  M 
Sbjct: 338 YVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMP 397

Query: 213 CKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQ 272
            KD++SW+ ++  +   +   + L +F EM+  +I  D   L+++IS    L  L +GK 
Sbjct: 398 EKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAALDQGKW 457

Query: 273 LHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC 332
           +HA +   GL+  + L  +++ MY KCG ++++  VFN + EK + SW A+I G   NG 
Sbjct: 458 VHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGL 517

Query: 333 AREALNQFIKMRQEKTDSVDSITLVSILTASGELAALE-------ICLQLHGIAFEAGFP 385
              +L+ F +M+       + IT + +L A   +  ++         ++ HGI  E    
Sbjct: 518 VERSLDMFSEMKNNGVIP-NEITFMGVLGACRHMGLVDEGRCHFASMIEKHGI--EPNVK 574

Query: 386 RYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHK 445
            Y     C++    + G ++ A  + E M    DV +W  ++     +G  E    +  K
Sbjct: 575 HY----GCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGRK 630

Query: 446 MTETGEVPDSSTYLSIL-NACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARA 504
           + E    PD   +  +L N     G   D L +   M ++  VK      GC        
Sbjct: 631 LIELQ--PDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTP----GC-------- 676

Query: 505 GCLSDASGLAGKLLEGMGPNIW 526
             L +A+G+  + L G   + W
Sbjct: 677 -SLIEANGVVHEFLAGDKTHPW 697



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 117/254 (46%), Gaps = 40/254 (15%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           +D  + + ++S   K G +++A  LFD +PEK++VSWS VI GY+ +    +++  F  M
Sbjct: 368 LDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEM 427

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES------------------ 104
            L  + P+   +V V+ A   L  L+  + +H  + K GL+                   
Sbjct: 428 QLGQIRPDETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCV 487

Query: 105 ----DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
               ++F G++   + S NA++ G   N L ++++ +F+  + +G++PN +T + V+  C
Sbjct: 488 ENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGAC 547

Query: 161 VALG--SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME------ 212
             +G      C     +  K G+  +V         Y C++DL     +  E E      
Sbjct: 548 RHMGLVDEGRCHFA-SMIEKHGIEPNVK-------HYGCMVDLLGRAGLLNEAEKLIESM 599

Query: 213 --CKDVISWTRMMG 224
               DV +W  ++G
Sbjct: 600 PMAPDVATWGALLG 613



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 110/231 (47%), Gaps = 16/231 (6%)

Query: 266 DLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCG--DLDSSRSVFNQITEKSLVSWTAI 323
           +LK+  ++ +Q++L G  S+   ++ ++   +      LD S  +F++I   +   W  +
Sbjct: 53  NLKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFIGLDYSLQIFDRIENSNGFMWNTM 112

Query: 324 ISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASG----ELAALEICLQLHGIA 379
           +  Y+Q+  A +AL  + K+  +     D+ T   ++ A      E    EI    H   
Sbjct: 113 MRAYIQSNSAEKALLLY-KLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEI----HDHV 167

Query: 380 FEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETA 439
            + GF     VQN LI+ Y+ CGN+  A  +F+E   L D VSWN+I+ GY   G  E A
Sbjct: 168 LKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVL-DSVSWNSILAGYVKKGDVEEA 226

Query: 440 LALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPS 490
             ++ +M +   V  +S  + +    G  G   +   +FN+M E++ V  S
Sbjct: 227 KLIFDQMPQRNIVASNSMIVLL----GKMGQVMEAWKLFNEMDEKDMVSWS 273


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 162/598 (27%), Positives = 269/598 (44%), Gaps = 118/598 (19%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y  + L++ Y K+G    A  LFDE+P +   SW+ V+  Y+  G  + S          
Sbjct: 50  YLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYAKRGDMDSS---------- 99

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGF 125
                                                  + F+ L     VS   ++ G+
Sbjct: 100 --------------------------------------CEFFDRLPQRDSVSWTTMIVGY 121

Query: 126 INNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDV 185
            N   + +A+ +       G+ P+  T+  V+    A       + +H   +KLGL  +V
Sbjct: 122 KNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNV 181

Query: 186 SVNNSVLDMYSCLMD-------------------------------LDAAIQIFREMECK 214
           SV+NS+L+MY+   D                               +D A+  F +M  +
Sbjct: 182 SVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAER 241

Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREM-RKSRIICDTVALLNLISVNAILGDLKRGKQL 273
           D+++W  M+  +    Y   AL +F +M R S +  D   L +++S  A L  L  G+Q+
Sbjct: 242 DIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQI 301

Query: 274 HAQVVLGGLQSELRLSNSIIAMYSKCG--------------------------------- 300
           H+ +V  G      + N++I+MYS+CG                                 
Sbjct: 302 HSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLG 361

Query: 301 DLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSIL 360
           D++ ++++F+ + ++ +V+WTA+I GY Q+G   EA+N F  M  E+    +S TL ++L
Sbjct: 362 DMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRP-NSYTLAAML 420

Query: 361 TASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDV 420
           + +  LA+L    Q+HG A ++G     SV N LI+ Y+K G++  A   F+ +   RD 
Sbjct: 421 SVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDT 480

Query: 421 VSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQ 480
           VSW ++I     +GH E AL L+  M   G  PD  TY+ + +AC HAGL N G   F+ 
Sbjct: 481 VSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDM 540

Query: 481 MIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI--WRALLSGCVLH 536
           M + +K+ P+  HY C+VDL  RAG L +A     K+   + P++  W +LLS C ++
Sbjct: 541 MKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKM--PIEPDVVTWGSLLSACRVY 596



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 126/517 (24%), Positives = 219/517 (42%), Gaps = 92/517 (17%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P    ++ + +LS Y K G +  +   FD +P+++ VSW+ +I GY   G + K+++   
Sbjct: 76  PLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMG 135

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL-------------- 106
            MM  G+ P+ FT+  VL + A  + LE  + +H  +VK GL  ++              
Sbjct: 136 EMMREGIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCG 195

Query: 107 ---------------------------------------FEGLKNPYLVSCNAIVAGFIN 127
                                                  FE +    +V+ N++++G+  
Sbjct: 196 DPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQ 255

Query: 128 NKLFQQAVLLFN-FFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVS 186
                +A+ +F+   R S L P+  T+ +V+  C  L    + E IH   +  G  +   
Sbjct: 256 RGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGI 315

Query: 187 VNNSVLDMYS-C--------------------------------LMDLDAAIQIFREMEC 213
           V N+++ MYS C                                L D++ A  IF  ++ 
Sbjct: 316 VLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKD 375

Query: 214 KDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQL 273
           +DV++WT M+  +      G+A+ +FR M       ++  L  ++SV + L  L  GKQ+
Sbjct: 376 RDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQI 435

Query: 274 HAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISGYVQNGC 332
           H   V  G    + +SN++I MY+K G + S+   F+ I  E+  VSWT++I    Q+G 
Sbjct: 436 HGSAVKSGEIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGH 495

Query: 333 AREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG--FPRYRSV 390
           A EAL  F  M  E     D IT V + +A      +    Q   +  +     P   S 
Sbjct: 496 AEEALELFETMLMEGLRP-DHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTL-SH 553

Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
             C++  + + G +  A    E+M    DVV+W +++
Sbjct: 554 YACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLL 590



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 115/466 (24%), Positives = 195/466 (41%), Gaps = 103/466 (22%)

Query: 148 PNAVTMLTVIRGCVAL--------GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCL- 198
           P  +++ T++  C  L          R   +L+H   IK GL+  V + N+++++YS   
Sbjct: 4   PVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLVFSVYLMNNLMNVYSKTG 63

Query: 199 ------------------------------MDLDAAIQIFREMECKDVISWTRMMGLFVD 228
                                          D+D++ + F  +  +D +SWT M+  + +
Sbjct: 64  YALHARKLFDEMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKN 123

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
                 A++I  EM +  I      L N+++  A    L+ GK++H+ +V  GL+  + +
Sbjct: 124 IGQYHKAIRIMGEMMREGIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSV 183

Query: 289 SNSIIAMYSKCGD-------------------------------LDSSRSVFNQITEKSL 317
           SNS++ MY+KCGD                               +D + + F Q+ E+ +
Sbjct: 184 SNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDI 243

Query: 318 VSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHG 377
           V+W ++ISGY Q G    AL+ F KM ++   S D  TL S+L+A   L  L I  Q+H 
Sbjct: 244 VTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHS 303

Query: 378 IAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFL-------------------- 417
                GF     V N LIS YS+CG V+ A  + E+ G                      
Sbjct: 304 HIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDM 363

Query: 418 ------------RDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
                       RDVV+W  +I GY  +G    A+ L+  M    + P+S T  ++L+  
Sbjct: 364 NEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVA 423

Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDAS 511
                   G  I    ++  ++  S      ++ + A+AG ++ AS
Sbjct: 424 SSLASLGHGKQIHGSAVKSGEIY-SVSVSNALITMYAKAGSITSAS 468


>gi|302784186|ref|XP_002973865.1| hypothetical protein SELMODRAFT_100621 [Selaginella moellendorffii]
 gi|300158197|gb|EFJ24820.1| hypothetical protein SELMODRAFT_100621 [Selaginella moellendorffii]
          Length = 616

 Score =  226 bits (576), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 135/435 (31%), Positives = 231/435 (53%), Gaps = 9/435 (2%)

Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
           +F+G++    +S + ++AG++ + L ++A+ L+   +   + P+  T   V+  C +LG 
Sbjct: 124 VFDGMRRRDSISWSKMIAGYVRHGLAREAIKLY---KAMAIDPDGFTFSAVLNACSSLGP 180

Query: 166 RAL--CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
           RAL   + IH    ++ L  DV V+++++ M++    L  + ++F +   KDV+ W  M+
Sbjct: 181 RALEVGKEIHAHMKRIWLKPDVFVDSALVTMFAKCGSLKESREVFDDCRWKDVLFWNSMI 240

Query: 224 GLFVDFEYAGDALKIFREMRKSR--IICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
             +    +  +A+++F+ M  S   +  + +    +++  + + DL++GK++H Q+V  G
Sbjct: 241 VAYSQSGHPREAIELFKSMGSSSPPVEPNAITYTTVLAACSAVEDLEQGKEVHRQMVDAG 300

Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
            Q +    NS++ MY+KCG +  +R VF+ + ++++VSWT IIS YV+ G  REAL+ + 
Sbjct: 301 FQFDAAAENSLVNMYAKCGSITEAREVFDGMKQRTVVSWTGIISAYVRKGHPREALDLYR 360

Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
           KM  E  +  + IT  S+L+A   L ALE    +H     AG+    +V N L+S Y KC
Sbjct: 361 KMGSEGVEP-NGITFASVLSACSSLGALEEGKAVHAQMKAAGYKPDLAVANALVSLYGKC 419

Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
           G+VD A  VF+ M  +R+VVSW  +I  Y  + H E A+ LY  M   G    S  Y ++
Sbjct: 420 GSVDSARKVFDRMK-IRNVVSWTAMISAYAHHRHSEEAIQLYKAMDLEGVQASSFIYGTV 478

Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
           L AC  AGL       F  +  +       E Y C+  +L RAG L++A  L   +    
Sbjct: 479 LTACSQAGLLESARHYFGCLTRDCGAPAKLEDYVCMATVLGRAGRLAEAEELLAVMPFEA 538

Query: 522 GPNIWRALLSGCVLH 536
               W  LL+ C  H
Sbjct: 539 EFVAWMGLLAACKAH 553



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/445 (26%), Positives = 222/445 (49%), Gaps = 31/445 (6%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y  + L+  Y K G +++A+ +FD +  ++ +SWS +I GY  +G   +++K +  M + 
Sbjct: 103 YVGNHLVQMYSKCGSLEDAKKVFDGMRRRDSISWSKMIAGYVRHGLAREAIKLYKAMAID 162

Query: 66  GLLPNSFTMVGVLVAAA--GLQNLELARSIHGLMVKFGLESDLF------------EGLK 111
              P+ FT   VL A +  G + LE+ + IH  M +  L+ D+F              LK
Sbjct: 163 ---PDGFTFSAVLNACSSLGPRALEVGKEIHAHMKRIWLKPDVFVDSALVTMFAKCGSLK 219

Query: 112 NPYLV--SC--------NAIVAGFINNKLFQQAVLLFNFFRGSG--LVPNAVTMLTVIRG 159
               V   C        N+++  +  +   ++A+ LF     S   + PNA+T  TV+  
Sbjct: 220 ESREVFDDCRWKDVLFWNSMIVAYSQSGHPREAIELFKSMGSSSPPVEPNAITYTTVLAA 279

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C A+      + +H   +  G   D +  NS+++MY+    +  A ++F  M+ + V+SW
Sbjct: 280 CSAVEDLEQGKEVHRQMVDAGFQFDAAAENSLVNMYAKCGSITEAREVFDGMKQRTVVSW 339

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
           T ++  +V   +  +AL ++R+M    +  + +   +++S  + LG L+ GK +HAQ+  
Sbjct: 340 TGIISAYVRKGHPREALDLYRKMGSEGVEPNGITFASVLSACSSLGALEEGKAVHAQMKA 399

Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
            G + +L ++N+++++Y KCG +DS+R VF+++  +++VSWTA+IS Y  +  + EA+  
Sbjct: 400 AGYKPDLAVANALVSLYGKCGSVDSARKVFDRMKIRNVVSWTAMISAYAHHRHSEEAIQL 459

Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHG-IAFEAGFPRYRSVQNCLISSY 398
           +  M  E   +  S    ++LTA  +   LE      G +  + G P       C+ +  
Sbjct: 460 YKAMDLEGVQA-SSFIYGTVLTACSQAGLLESARHYFGCLTRDCGAPAKLEDYVCMATVL 518

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSW 423
            + G +  A  +   M F  + V+W
Sbjct: 519 GRAGRLAEAEELLAVMPFEAEFVAW 543



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 118/387 (30%), Positives = 194/387 (50%), Gaps = 18/387 (4%)

Query: 156 VIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKD 215
           ++R C   G  A  + IH   +K G   +V V N ++ MYS    L+ A ++F  M  +D
Sbjct: 76  LLRDC---GELAAGKKIHEHVVKNGYYENVYVGNHLVQMYSKCGSLEDAKKVFDGMRRRD 132

Query: 216 VISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGD--LKRGKQL 273
            ISW++M+  +V    A +A+K+++ M    I  D      +++  + LG   L+ GK++
Sbjct: 133 SISWSKMIAGYVRHGLAREAIKLYKAM---AIDPDGFTFSAVLNACSSLGPRALEVGKEI 189

Query: 274 HAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA 333
           HA +    L+ ++ + ++++ M++KCG L  SR VF+    K ++ W ++I  Y Q+G  
Sbjct: 190 HAHMKRIWLKPDVFVDSALVTMFAKCGSLKESREVFDDCRWKDVLFWNSMIVAYSQSGHP 249

Query: 334 REALNQFIKMRQEKTD-SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN 392
           REA+  F  M         ++IT  ++L A   +  LE   ++H    +AGF    + +N
Sbjct: 250 REAIELFKSMGSSSPPVEPNAITYTTVLAACSAVEDLEQGKEVHRQMVDAGFQFDAAAEN 309

Query: 393 CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV 452
            L++ Y+KCG++  A  VF+ M   R VVSW  II  Y   GH   AL LY KM   G  
Sbjct: 310 SLVNMYAKCGSITEAREVFDGMK-QRTVVSWTGIISAYVRKGHPREALDLYRKMGSEGVE 368

Query: 453 PDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASG 512
           P+  T+ S+L+AC   G   +G  +  QM +    KP       +V L  + G +  A  
Sbjct: 369 PNGITFASVLSACSSLGALEEGKAVHAQM-KAAGYKPDLAVANALVSLYGKCGSVDSAR- 426

Query: 513 LAGKLLEGMG-PNI--WRALLSGCVLH 536
              K+ + M   N+  W A++S    H
Sbjct: 427 ---KVFDRMKIRNVVSWTAMISAYAHH 450



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 135/263 (51%), Gaps = 24/263 (9%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  S L++ + K G +KE+  +FD+   K+V+ W+ +I  YS +G   ++++ F  M 
Sbjct: 201 DVFVDSALVTMFAKCGSLKESREVFDDCRWKDVLFWNSMIVAYSQSGHPREAIELFKSMG 260

Query: 64  LSG--LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------- 105
            S   + PN+ T   VL A + +++LE  + +H  MV  G + D                
Sbjct: 261 SSSPPVEPNAITYTTVLAACSAVEDLEQGKEVHRQMVDAGFQFDAAAENSLVNMYAKCGS 320

Query: 106 ------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                 +F+G+K   +VS   I++ ++     ++A+ L+      G+ PN +T  +V+  
Sbjct: 321 ITEAREVFDGMKQRTVVSWTGIISAYVRKGHPREALDLYRKMGSEGVEPNGITFASVLSA 380

Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
           C +LG+    + +H      G   D++V N+++ +Y     +D+A ++F  M+ ++V+SW
Sbjct: 381 CSSLGALEEGKAVHAQMKAAGYKPDLAVANALVSLYGKCGSVDSARKVFDRMKIRNVVSW 440

Query: 220 TRMMGLFVDFEYAGDALKIFREM 242
           T M+  +    ++ +A+++++ M
Sbjct: 441 TAMISAYAHHRHSEEAIQLYKAM 463



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 82/184 (44%), Gaps = 22/184 (11%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
            D    + L++ Y K G I EA  +FD + ++ VVSW+ +I  Y   G   +++  +  M
Sbjct: 303 FDAAAENSLVNMYAKCGSITEAREVFDGMKQRTVVSWTGIISAYVRKGHPREALDLYRKM 362

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------- 106
              G+ PN  T   VL A + L  LE  +++H  M   G + DL                
Sbjct: 363 GSEGVEPNGITFASVLSACSSLGALEEGKAVHAQMKAAGYKPDLAVANALVSLYGKCGSV 422

Query: 107 ------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                 F+ +K   +VS  A+++ + +++  ++A+ L+      G+  ++    TV+  C
Sbjct: 423 DSARKVFDRMKIRNVVSWTAMISAYAHHRHSEEAIQLYKAMDLEGVQASSFIYGTVLTAC 482

Query: 161 VALG 164
              G
Sbjct: 483 SQAG 486


>gi|302760085|ref|XP_002963465.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
 gi|300168733|gb|EFJ35336.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
          Length = 829

 Score =  226 bits (576), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 154/559 (27%), Positives = 278/559 (49%), Gaps = 37/559 (6%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           ++S Y       +A+  FD + ++N+ SW+ ++  ++I+G  +++++A   M   G+ P+
Sbjct: 85  IVSMYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPD 144

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFE 108
           + T +  L +    ++L     IH ++V   LE D                      +F 
Sbjct: 145 AVTFITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFA 204

Query: 109 GLKNPYLVSCNAIVAGF--INNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
            ++    V   +I+AG   ++  +++ A+  F F    G+      M+T++  C +    
Sbjct: 205 KMERTRNVISWSIMAGAHALHGNVWE-ALRHFRFMLLLGIKATKSAMVTILSACSSPALV 263

Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME--CKDVISWTRMMG 224
               LIH      G   ++ V N+V+ MY     ++ A ++F  M+   +DV+SW  M+ 
Sbjct: 264 QDGRLIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLS 323

Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
            +V  +   DA+++++ M+   +  D V  ++L+S  +   D+  G+ LH Q+V   L+ 
Sbjct: 324 AYVHNDRGKDAIQLYQRMQ---LRADKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEK 380

Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
            + + N++++MY+KCG    +R+VF+++ ++S++SWT IIS YV+     EA + F +M 
Sbjct: 381 NVIVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQML 440

Query: 345 Q-EKTDS-----VDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
           + EK  S      D++  V+IL A  +++ALE    +   A   G    ++V   +++ Y
Sbjct: 441 ELEKNGSSQRVKPDALAFVTILNACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLY 500

Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
            KCG ++    +F+ +    DV  WN +I  Y   G    AL L+ +M   G  PDS ++
Sbjct: 501 GKCGEIEEGRRIFDGVCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSF 560

Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENK-VKPSQEHYGCVVDLLARAGCLSDASGLAGKL 517
           +SIL AC H GL + G   F  M  E + V  + +H+GCV DLL R G L +A     KL
Sbjct: 561 VSILLACSHTGLEDQGKSYFTSMTTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKL 620

Query: 518 LEGMGPNIWRALLSGCVLH 536
                   W +LL+ C  H
Sbjct: 621 PVKPDAVAWTSLLAACRNH 639



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 158/317 (49%), Gaps = 7/317 (2%)

Query: 172 IHGLTIKLGLIL-DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFE 230
           IH L +K  L+  ++ + N ++ MY+       A   F  +E +++ SWT ++  F    
Sbjct: 65  IHSLAVKHNLLPGNLILGNHIVSMYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISG 124

Query: 231 YAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSN 290
            + + L+    MR+  +  D V  +  +        L+ G ++H  VV   L+ + ++SN
Sbjct: 125 QSKETLRALERMRQDGVRPDAVTFITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSN 184

Query: 291 SIIAMYSKCGDLDSSRSVFNQITE-KSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD 349
           +++ MY KCG L  ++ VF ++   ++++SW+ +   +  +G   EAL  F  M      
Sbjct: 185 ALLNMYKKCGSLSHAKRVFAKMERTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIK 244

Query: 350 SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYI 409
           +  S  +V+IL+A    A ++    +H     +GF     V N +++ Y +CG V+ A  
Sbjct: 245 ATKS-AMVTILSACSSPALVQDGRLIHSCIALSGFESELLVANAVMTMYGRCGAVEEARK 303

Query: 410 VFEEMG-FLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468
           VF+ M   LRDVVSWN ++  Y  N  G+ A+ LY +M       D  TY+S+L+AC  A
Sbjct: 304 VFDAMDEALRDVVSWNIMLSAYVHNDRGKDAIQLYQRMQLRA---DKVTYVSLLSACSSA 360

Query: 469 GLTNDGLVIFNQMIEEN 485
                G V+  Q++ + 
Sbjct: 361 EDVGLGRVLHKQIVNDE 377


>gi|302818178|ref|XP_002990763.1| hypothetical protein SELMODRAFT_132289 [Selaginella moellendorffii]
 gi|300141501|gb|EFJ08212.1| hypothetical protein SELMODRAFT_132289 [Selaginella moellendorffii]
          Length = 661

 Score =  226 bits (576), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 158/569 (27%), Positives = 269/569 (47%), Gaps = 51/569 (8%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML-SGLLP 69
           L++ Y K G+++EA  +F  +   N+VSW+ +I  ++  G    ++  F  M L + ++P
Sbjct: 58  LINMYGKCGRVEEARAVFASMEHPNLVSWNTIIAAHAAAGDGRGALAVFRAMQLEASVVP 117

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------------F 107
           +  +   V  A    +    AR IH  +   G   D+                      F
Sbjct: 118 DRVSFTSVANACGSARE---ARIIHASVAARGFLDDVIVCTALITAYCRCGSLGEARATF 174

Query: 108 EGL--KNPYLVSCNAIVAGFINNKLFQQAVLLF----NFFRGSG----LVPNAVTMLTVI 157
           + +  +   +V+  A++AG+  +   ++A+ LF        G G    + PNAVT++TV+
Sbjct: 175 DAMAPRARNVVTWTALIAGYAQSGHLEEALDLFWSMAEHDGGGGETWSVAPNAVTIVTVV 234

Query: 158 RGCVALGSRALCELIHGLTIKLGLILD--VSVNNSVLDMYSCLMDLDAAIQIFREMECKD 215
             C    +    + IH   I    I D  V +  S++ MY+    ++ A  +F  M  ++
Sbjct: 235 NLCAEFAALDQGKAIHDRCIHAAAIRDDPVQIGTSLVTMYAKCGSIEDARLVFDSMAERN 294

Query: 216 VISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
            +SW  M+  +    +    L +FR M +  +  + V LL +++  + L  L++   +H 
Sbjct: 295 EVSWNAMLSGYSQHGHGAQLLHLFRAMLQGGVQPNAVTLLPVVNACSSLAQLRQADDIHG 354

Query: 276 QVVLGG-------LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYV 328
           ++VL         L++   +  ++ +MY++CG +D + +VF  + ++++VSW A+I  Y 
Sbjct: 355 RIVLQSRDTPALSLRTNAVVGCALCSMYARCGSIDEAAAVFAGMEQRNVVSWNAMIGAYA 414

Query: 329 QNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYR 388
           Q+G  R AL  F  M+Q      D+ITL+S+L A           Q+HG + +    R  
Sbjct: 415 QHGRGRLALAVFGGMQQHGVKP-DAITLISVLDACAGAGDARRGSQVHGWSLQLQL-RSA 472

Query: 389 SVQNCLISSYSKCGNVDLAYIVFEEM-GFLRDVVSWNTIIYGYGVNGHGETALALYHKMT 447
           ++ N  ++ Y+K G V  A  VFE M    R ++SW+ ++  Y   GH E A  L+H M 
Sbjct: 473 ALDNAAVNMYAKSGRVAAAREVFEAMDSQRRTIMSWSAMVAAYAGVGHAEEAFRLFHAMQ 532

Query: 448 ETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCL 507
             G  P+  T +SIL AC HAG+   G   F  M  +  V P +EH GCVVD+L RAG +
Sbjct: 533 REGVRPNHVTLISILGACSHAGMLQAGCSCFASMAADYGVWPREEHTGCVVDMLGRAGWV 592

Query: 508 SDASGLAGK---LLEGMGPNIWRALLSGC 533
             A  L  +      G     W A+L  C
Sbjct: 593 EQAHRLVQRSGAGGGGGDAQAWMAVLGAC 621



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 118/434 (27%), Positives = 214/434 (49%), Gaps = 29/434 (6%)

Query: 144 SGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVS---VNNSVLDMYSCLMD 200
           SG+   A T   +++ C  L + +  + IH   +        S   V N +++MY     
Sbjct: 8   SGVAAEASTYARLLQACARLKALSQGQRIHAHILSSHSSSGSSSTLVLNHLINMYGKCGR 67

Query: 201 LDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMR-KSRIICDTVALLNLIS 259
           ++ A  +F  ME  +++SW  ++           AL +FR M+ ++ ++ D V   +  S
Sbjct: 68  VEEARAVFASMEHPNLVSWNTIIAAHAAAGDGRGALAVFRAMQLEASVVPDRV---SFTS 124

Query: 260 VNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKS--L 317
           V    G  +  + +HA V   G   ++ +  ++I  Y +CG L  +R+ F+ +  ++  +
Sbjct: 125 VANACGSAREARIIHASVAARGFLDDVIVCTALITAYCRCGSLGEARATFDAMAPRARNV 184

Query: 318 VSWTAIISGYVQNGCAREALNQFIKMRQE-----KTDSV--DSITLVSILTASGELAALE 370
           V+WTA+I+GY Q+G   EAL+ F  M +      +T SV  +++T+V+++    E AAL+
Sbjct: 185 VTWTALIAGYAQSGHLEEALDLFWSMAEHDGGGGETWSVAPNAVTIVTVVNLCAEFAALD 244

Query: 371 ICLQLHGIAFEAGFPRYRSVQ--NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIY 428
               +H     A   R   VQ    L++ Y+KCG+++ A +VF+ M   R+ VSWN ++ 
Sbjct: 245 QGKAIHDRCIHAAAIRDDPVQIGTSLVTMYAKCGSIEDARLVFDSMAE-RNEVSWNAMLS 303

Query: 429 GYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVK 488
           GY  +GHG   L L+  M + G  P++ T L ++NAC           I  +++ +++  
Sbjct: 304 GYSQHGHGAQLLHLFRAMLQGGVQPNAVTLLPVVNACSSLAQLRQADDIHGRIVLQSRDT 363

Query: 489 P-----SQEHYGCVV-DLLARAGCLSDASGL-AGKLLEGMGPNIWRALLSGCVLHVGRFQ 541
           P     +    GC +  + AR G + +A+ + AG  +E      W A++     H GR +
Sbjct: 364 PALSLRTNAVVGCALCSMYARCGSIDEAAAVFAG--MEQRNVVSWNAMIGAYAQH-GRGR 420

Query: 542 DAEALRSGSQKKGI 555
            A A+  G Q+ G+
Sbjct: 421 LALAVFGGMQQHGV 434



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 173/365 (47%), Gaps = 38/365 (10%)

Query: 4   DPYN-SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           DP    + L++ Y K G I++A  +FD + E+N VSW+ ++ GYS +G   + +  F  M
Sbjct: 262 DPVQIGTSLVTMYAKCGSIEDARLVFDSMAERNEVSWNAMLSGYSQHGHGAQLLHLFRAM 321

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMV-------KFGLESD---------- 105
           +  G+ PN+ T++ V+ A + L  L  A  IHG +V          L ++          
Sbjct: 322 LQGGVQPNAVTLLPVVNACSSLAQLRQADDIHGRIVLQSRDTPALSLRTNAVVGCALCSM 381

Query: 106 ------------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTM 153
                       +F G++   +VS NA++  +  +   + A+ +F   +  G+ P+A+T+
Sbjct: 382 YARCGSIDEAAAVFAGMEQRNVVSWNAMIGAYAQHGRGRLALAVFGGMQQHGVKPDAITL 441

Query: 154 LTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC 213
           ++V+  C   G       +HG +++L L    +++N+ ++MY+    + AA ++F  M+ 
Sbjct: 442 ISVLDACAGAGDARRGSQVHGWSLQLQL-RSAALDNAAVNMYAKSGRVAAAREVFEAMDS 500

Query: 214 --KDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGK 271
             + ++SW+ M+  +    +A +A ++F  M++  +  + V L++++   +  G L+ G 
Sbjct: 501 QRRTIMSWSAMVAAYAGVGHAEEAFRLFHAMQREGVRPNHVTLISILGACSHAGMLQAGC 560

Query: 272 QLHAQVVLG-GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLV----SWTAIISG 326
              A +    G+      +  ++ M  + G ++ +  +  +           +W A++  
Sbjct: 561 SCFASMAADYGVWPREEHTGCVVDMLGRAGWVEQAHRLVQRSGAGGGGGDAQAWMAVLGA 620

Query: 327 YVQNG 331
             Q G
Sbjct: 621 CSQQG 625



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 142/308 (46%), Gaps = 17/308 (5%)

Query: 242 MRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLS---NSIIAMYSK 298
           + +S +  +      L+   A L  L +G+++HA ++     S    +   N +I MY K
Sbjct: 5   VERSGVAAEASTYARLLQACARLKALSQGQRIHAHILSSHSSSGSSSTLVLNHLINMYGK 64

Query: 299 CGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVS 358
           CG ++ +R+VF  +   +LVSW  II+ +   G  R AL  F  M+ E +   D ++  S
Sbjct: 65  CGRVEEARAVFASMEHPNLVSWNTIIAAHAAAGDGRGALAVFRAMQLEASVVPDRVSFTS 124

Query: 359 ILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMG-FL 417
           +  A G      I   +H      GF     V   LI++Y +CG++  A   F+ M    
Sbjct: 125 VANACGSAREARI---IHASVAARGFLDDVIVCTALITAYCRCGSLGEARATFDAMAPRA 181

Query: 418 RDVVSWNTIIYGYGVNGHGETALALYHKMTET----GEV----PDSSTYLSILNACGHAG 469
           R+VV+W  +I GY  +GH E AL L+  M E     GE     P++ T ++++N C    
Sbjct: 182 RNVVTWTALIAGYAQSGHLEEALDLFWSMAEHDGGGGETWSVAPNAVTIVTVVNLCAEFA 241

Query: 470 LTNDGLVIFNQMIEENKVKPSQEHYGC-VVDLLARAGCLSDASGLAGKLLEGMGPNIWRA 528
             + G  I ++ I    ++      G  +V + A+ G + DA  +   + E      W A
Sbjct: 242 ALDQGKAIHDRCIHAAAIRDDPVQIGTSLVTMYAKCGSIEDARLVFDSMAE-RNEVSWNA 300

Query: 529 LLSGCVLH 536
           +LSG   H
Sbjct: 301 MLSGYSQH 308


>gi|242073178|ref|XP_002446525.1| hypothetical protein SORBIDRAFT_06g017520 [Sorghum bicolor]
 gi|241937708|gb|EES10853.1| hypothetical protein SORBIDRAFT_06g017520 [Sorghum bicolor]
          Length = 910

 Score =  226 bits (576), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 163/593 (27%), Positives = 279/593 (47%), Gaps = 65/593 (10%)

Query: 4   DPYNSSKLLSNYFKSG---KIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           D    + L+S Y K G    + +A   F  I  K+VVSW+ VI GY  N   ++++  F 
Sbjct: 215 DTLCGNALVSMYAKCGGSRAMDDAHRAFSSIRCKDVVSWNSVIAGYIENRLFQEALALFG 274

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQ-NLELARSIHGLMVKFGLESD-------------- 105
            M   G LPN  T+  +L   +  +      + +H  +V+ GLE D              
Sbjct: 275 QMTSQGSLPNYSTVASILPVCSFTEFGRYHGKEVHSFVVRHGLEMDVSVSNALMTHYSKV 334

Query: 106 --------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
                   +F  +    +VS N I+AG++ N    +A+ LF+    +G+ P++V+ ++++
Sbjct: 335 LEVKAVESIFMSMDVRDIVSWNTIIAGYVMNGYHYRALGLFHELLSTGIAPDSVSFISLL 394

Query: 158 RGCVALGSRALCELIHGLTIKLGLIL-DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
             C  +G       +HG  ++  ++L + S+ N+++  YS     D A + F ++  KD 
Sbjct: 395 TACAQVGDVKAGMGVHGYILQRPVLLQETSLMNALVTFYSHCDRFDDAFRAFTDILNKDS 454

Query: 217 ISWTRMMGLFVDFE-YAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
           ISW  ++      E +      +  EM +     D+V +LN+I V+   G +K  ++ H 
Sbjct: 455 ISWNAILSACAHSEQHIEKFFVLMSEMCRGVNQWDSVTVLNVIHVSTFCG-IKMVREAHG 513

Query: 276 QVVLGGLQSELRLSNSIIAMYSKCGD-------------------------------LDS 304
             +  G   E  ++N+I+  Y KCG                                ++ 
Sbjct: 514 WSLRVGYTGETSVANAILDAYVKCGYSHDANILFRNHGGRNTVTDNIMISCYLKNNCIED 573

Query: 305 SRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASG 364
           +  +FN + EK L SW  +I  Y QN    +A + F  ++ E     D +++ +IL A  
Sbjct: 574 AEVIFNHMAEKDLTSWNLMIQLYAQNHMDDQAFSLFNHLQSEGLKP-DLVSITNILEACI 632

Query: 365 ELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWN 424
            L ++++  Q H     A       ++  L+ +YSKCGN+  AY +FE     +D+V++ 
Sbjct: 633 HLCSVQLVRQCHAYMLRASLEDIH-LEGALVDAYSKCGNITNAYNIFEVSS--KDLVTFT 689

Query: 425 TIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEE 484
            +I  Y ++G  E A+ L+ KM +    PD     ++L+AC HAGL + G+ IF  + E 
Sbjct: 690 AMIGCYAMHGMAEKAVELFSKMIKLDIRPDHVVLTTLLSACSHAGLVDAGIKIFKSIGEI 749

Query: 485 NKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL-LEGMGPNIWRALLSGCVLH 536
           ++V P+ EHY C+VDLLAR+G L DA   A  +    +  N W +LL  C +H
Sbjct: 750 HRVVPTAEHYACMVDLLARSGHLQDAYMFALDMPPHAVNANAWSSLLGACKVH 802



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 140/514 (27%), Positives = 245/514 (47%), Gaps = 70/514 (13%)

Query: 19  GKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL----LPNSFTM 74
           G + +A  +FDE+   + V W+I+I   S  G  E +   F  M+  G+    +P + T+
Sbjct: 125 GSLADALLVFDEMARPDAVCWNILITACSRRGLFEDAFVLFRSMLSCGVVEQSMPTAVTV 184

Query: 75  VGVLVAAAGLQNLELARSIHGLMVKFGLESDL-------------------------FEG 109
             ++ A A   +L   RS+HG +VK GLESD                          F  
Sbjct: 185 AVIVPACAKWGHLRTGRSVHGYVVKTGLESDTLCGNALVSMYAKCGGSRAMDDAHRAFSS 244

Query: 110 LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC--VALGSRA 167
           ++   +VS N+++AG+I N+LFQ+A+ LF      G +PN  T+ +++  C     G R 
Sbjct: 245 IRCKDVVSWNSVIAGYIENRLFQEALALFGQMTSQGSLPNYSTVASILPVCSFTEFG-RY 303

Query: 168 LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
             + +H   ++ GL +DVSV+N+++  YS ++++ A   IF  M+ +D++SW  ++  +V
Sbjct: 304 HGKEVHSFVVRHGLEMDVSVSNALMTHYSKVLEVKAVESIFMSMDVRDIVSWNTIIAGYV 363

Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG-LQSEL 286
              Y   AL +F E+  + I  D+V+ ++L++  A +GD+K G  +H  ++    L  E 
Sbjct: 364 MNGYHYRALGLFHELLSTGIAPDSVSFISLLTACAQVGDVKAGMGVHGYILQRPVLLQET 423

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            L N+++  YS C   D +   F  I  K  +SW AI+S       + + + +F  +  E
Sbjct: 424 SLMNALVTFYSHCDRFDDAFRAFTDILNKDSISWNAILSACAH---SEQHIEKFFVLMSE 480

Query: 347 KTDSV---DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
               V   DS+T+++++  S     +++  + HG +   G+    SV N ++ +Y KCG 
Sbjct: 481 MCRGVNQWDSVTVLNVIHVS-TFCGIKMVREAHGWSLRVGYTGETSVANAILDAYVKCGY 539

Query: 404 VDLAYIVFEEMG-------------FL-----------------RDVVSWNTIIYGYGVN 433
              A I+F   G             +L                 +D+ SWN +I  Y  N
Sbjct: 540 SHDANILFRNHGGRNTVTDNIMISCYLKNNCIEDAEVIFNHMAEKDLTSWNLMIQLYAQN 599

Query: 434 GHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
              + A +L++ +   G  PD  +  +IL AC H
Sbjct: 600 HMDDQAFSLFNHLQSEGLKPDLVSITNILEACIH 633



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 114/446 (25%), Positives = 207/446 (46%), Gaps = 40/446 (8%)

Query: 62  MMLSGLLPNSFTMVGVLVAAAGLQNL--ELARSIHGLMVKFGLESD-------------- 105
           M+  GL P +  +   + +A+ L      LAR +HGL VK G  +               
Sbjct: 63  MLAEGLRPGALELAAAIRSASALPGGGGALARCLHGLAVKSGRVASSATVAKAVMDAYGR 122

Query: 106 ----------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLV----PNAV 151
                     +F+ +  P  V  N ++       LF+ A +LF      G+V    P AV
Sbjct: 123 RLGSLADALLVFDEMARPDAVCWNILITACSRRGLFEDAFVLFRSMLSCGVVEQSMPTAV 182

Query: 152 TMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCL---MDLDAAIQIF 208
           T+  ++  C   G       +HG  +K GL  D    N+++ MY+       +D A + F
Sbjct: 183 TVAVIVPACAKWGHLRTGRSVHGYVVKTGLESDTLCGNALVSMYAKCGGSRAMDDAHRAF 242

Query: 209 REMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLK 268
             + CKDV+SW  ++  +++     +AL +F +M     + +   + +++ V +   +  
Sbjct: 243 SSIRCKDVVSWNSVIAGYIENRLFQEALALFGQMTSQGSLPNYSTVASILPVCS-FTEFG 301

Query: 269 R--GKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISG 326
           R  GK++H+ VV  GL+ ++ +SN+++  YSK  ++ +  S+F  +  + +VSW  II+G
Sbjct: 302 RYHGKEVHSFVVRHGLEMDVSVSNALMTHYSKVLEVKAVESIFMSMDVRDIVSWNTIIAG 361

Query: 327 YVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG-FP 385
           YV NG    AL  F ++      + DS++ +S+LTA  ++  ++  + +HG   +     
Sbjct: 362 YVMNGYHYRALGLFHELLSTGI-APDSVSFISLLTACAQVGDVKAGMGVHGYILQRPVLL 420

Query: 386 RYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYG-VNGHGETALALYH 444
           +  S+ N L++ YS C   D A+  F ++   +D +SWN I+        H E    L  
Sbjct: 421 QETSLMNALVTFYSHCDRFDDAFRAFTDI-LNKDSISWNAILSACAHSEQHIEKFFVLMS 479

Query: 445 KMTETGEVPDSSTYLSILNACGHAGL 470
           +M       DS T L++++     G+
Sbjct: 480 EMCRGVNQWDSVTVLNVIHVSTFCGI 505


>gi|413918395|gb|AFW58327.1| hypothetical protein ZEAMMB73_709604 [Zea mays]
          Length = 906

 Score =  226 bits (576), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 160/594 (26%), Positives = 279/594 (46%), Gaps = 65/594 (10%)

Query: 4   DPYNSSKLLSNYFKSGKIK---EAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           D    + L+S Y K G  +   +A   F  I  K+VVSW+ VI GY  N    +++  FS
Sbjct: 209 DTLCGNALVSMYAKCGGSRVMVDAHRAFSSIRCKDVVSWNSVIAGYIENQLFGEALALFS 268

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQ-NLELARSIHGLMVKFGLESD-------------- 105
            M+  G LPN  T+  +L   +  +      + +H  +V+ G+E D              
Sbjct: 269 QMISQGYLPNYSTVASILPVCSFTEFGRHHGKEVHSFVVRHGMEIDVSVSNALMTHYSKV 328

Query: 106 --------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
                   +F  +    +VS N I+AG++ N    +A+ LF     +G+ P++V+ ++++
Sbjct: 329 LEMKDVESIFTSMDVRDIVSWNTIIAGYVMNGYHHRALGLFQGLLSTGIAPDSVSFISLL 388

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
             C  +G       +HG   +  ++ + S+ N+++  YS     D A + F ++  KD I
Sbjct: 389 TACAQVGDVKTGMEVHGYIFQRPVLQETSLMNALVTFYSHCDRFDDAFRAFTDILNKDSI 448

Query: 218 SWTRMMGLFVDFE-YAGDALKIFREMRKSRIIC--DTVALLNLISVNAILGDLKRGKQLH 274
           SW  ++      E +      +  EM +    C  D+V +LN+I ++   G +K  ++ H
Sbjct: 449 SWNAILSACATSEQHIEKFFVLMSEMCRGVNQCQWDSVTVLNVIHMSTFCG-IKMVREAH 507

Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGD-------------------------------LD 303
              +  G   E  ++N+I+  Y KCG                                ++
Sbjct: 508 GWSLRVGYTGETSVANAILDAYVKCGYSHDASILFRNHAGRNIVTDNIMISCYLKSNCIE 567

Query: 304 SSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTAS 363
            +  +FN + EK L SW  +I  Y QN    +A + F  ++ E     D +++ +IL A 
Sbjct: 568 DAEVIFNHMAEKDLTSWNLMIQLYAQNDMDGQAFSLFNHLQSEGLKP-DIVSIANILEAC 626

Query: 364 GELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSW 423
             L ++++  Q H     A       ++  L+ +YSKCGN+  AY +F+ +   +D+V++
Sbjct: 627 IHLCSVQLVRQCHAYMLRASLEDIH-LEGALVDAYSKCGNITNAYNIFQ-ISPKKDLVTF 684

Query: 424 NTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIE 483
             +I  Y ++G  E A+ L+ KM +    PD     ++L+AC HAGL + G+ IF  + E
Sbjct: 685 TAMIGCYAMHGMAEEAVELFSKMLKLDIRPDHVVLTTLLSACSHAGLVDAGIKIFKSIRE 744

Query: 484 ENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL-LEGMGPNIWRALLSGCVLH 536
            ++V P+ EHY C+VDLLAR+G + DA   A  +    +  N W +LL  C +H
Sbjct: 745 IHRVVPTAEHYACMVDLLARSGHIQDAYMFALDMPPHAVNANAWSSLLGACKVH 798



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 136/528 (25%), Positives = 250/528 (47%), Gaps = 76/528 (14%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           +  ++  Y + G + +A  LFDE+   + V W+I+I   S  G  E +   F  M+  G+
Sbjct: 109 AKAVMDAYGRFGSLADALLLFDEMARPDAVCWNILITACSRRGLFEDAFILFRSMLSCGV 168

Query: 68  ---LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL------------------ 106
              +P + T+  ++ A A  ++L+  RS+H  +VK GLESD                   
Sbjct: 169 GQGMPTAVTVAVIVPACAKWRHLQTGRSVHCYVVKTGLESDTLCGNALVSMYAKCGGSRV 228

Query: 107 -------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
                  F  ++   +VS N+++AG+I N+LF +A+ LF+     G +PN  T+ +++  
Sbjct: 229 MVDAHRAFSSIRCKDVVSWNSVIAGYIENQLFGEALALFSQMISQGYLPNYSTVASILPV 288

Query: 160 C--VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
           C     G R   + +H   ++ G+ +DVSV+N+++  YS ++++     IF  M+ +D++
Sbjct: 289 CSFTEFG-RHHGKEVHSFVVRHGMEIDVSVSNALMTHYSKVLEMKDVESIFTSMDVRDIV 347

Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
           SW  ++  +V   Y   AL +F+ +  + I  D+V+ ++L++  A +GD+K G ++H  +
Sbjct: 348 SWNTIIAGYVMNGYHHRALGLFQGLLSTGIAPDSVSFISLLTACAQVGDVKTGMEVHGYI 407

Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA--RE 335
               +  E  L N+++  YS C   D +   F  I  K  +SW AI+S      CA   +
Sbjct: 408 FQRPVLQETSLMNALVTFYSHCDRFDDAFRAFTDILNKDSISWNAILS-----ACATSEQ 462

Query: 336 ALNQFIKMRQEKTDSV-----DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV 390
            + +F  +  E    V     DS+T+++++  S     +++  + HG +   G+    SV
Sbjct: 463 HIEKFFVLMSEMCRGVNQCQWDSVTVLNVIHMS-TFCGIKMVREAHGWSLRVGYTGETSV 521

Query: 391 QNCLISSYSKCGN-------------------------------VDLAYIVFEEMGFLRD 419
            N ++ +Y KCG                                ++ A ++F  M   +D
Sbjct: 522 ANAILDAYVKCGYSHDASILFRNHAGRNIVTDNIMISCYLKSNCIEDAEVIFNHMA-EKD 580

Query: 420 VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
           + SWN +I  Y  N     A +L++ +   G  PD  +  +IL AC H
Sbjct: 581 LTSWNLMIQLYAQNDMDGQAFSLFNHLQSEGLKPDIVSIANILEACIH 628



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 120/415 (28%), Positives = 191/415 (46%), Gaps = 25/415 (6%)

Query: 143 GSGLVPNAVTMLTVIRGCVAL--GSRALCELIHGLTIKLGLILD-VSVNNSVLDMYSCLM 199
           G G  P A+ +   IR   AL     AL   +HGL +K G +    +V  +V+D Y    
Sbjct: 61  GEGHRPGALELAAAIRSSSALPGSGSALARCLHGLAVKAGRVASSATVAKAVMDAYGRFG 120

Query: 200 DLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRI---ICDTVALLN 256
            L  A+ +F EM   D + W  ++          DA  +FR M    +   +   V +  
Sbjct: 121 SLADALLLFDEMARPDAVCWNILITACSRRGLFEDAFILFRSMLSCGVGQGMPTAVTVAV 180

Query: 257 LISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGD----LDSSRSVFNQI 312
           ++   A    L+ G+ +H  VV  GL+S+    N++++MY+KCG     +D+ R+ F+ I
Sbjct: 181 IVPACAKWRHLQTGRSVHCYVVKTGLESDTLCGNALVSMYAKCGGSRVMVDAHRA-FSSI 239

Query: 313 TEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE----KTDSVDSITLVSILTASGELAA 368
             K +VSW ++I+GY++N    EAL  F +M  +       +V SI  V   T  G    
Sbjct: 240 RCKDVVSWNSVIAGYIENQLFGEALALFSQMISQGYLPNYSTVASILPVCSFTEFGRHHG 299

Query: 369 LEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIY 428
            E+    H      G     SV N L++ YSK   +     +F  M  +RD+VSWNTII 
Sbjct: 300 KEV----HSFVVRHGMEIDVSVSNALMTHYSKVLEMKDVESIFTSMD-VRDIVSWNTIIA 354

Query: 429 GYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVK 488
           GY +NG+   AL L+  +  TG  PDS +++S+L AC   G    G+ +   + +   ++
Sbjct: 355 GYVMNGYHHRALGLFQGLLSTGIAPDSVSFISLLTACAQVGDVKTGMEVHGYIFQRPVLQ 414

Query: 489 PSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVL---HVGRF 540
            +      +V   +      DA      +L     + W A+LS C     H+ +F
Sbjct: 415 ETSL-MNALVTFYSHCDRFDDAFRAFTDILNKDSIS-WNAILSACATSEQHIEKF 467



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 103/401 (25%), Positives = 192/401 (47%), Gaps = 40/401 (9%)

Query: 62  MMLSGLLPNSFTMVGVLVAAAGL--QNLELARSIHGLMVK-------------------- 99
           M+  G  P +  +   + +++ L      LAR +HGL VK                    
Sbjct: 59  MLGEGHRPGALELAAAIRSSSALPGSGSALARCLHGLAVKAGRVASSATVAKAVMDAYGR 118

Query: 100 FGLESD---LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGL---VPNAVTM 153
           FG  +D   LF+ +  P  V  N ++       LF+ A +LF      G+   +P AVT+
Sbjct: 119 FGSLADALLLFDEMARPDAVCWNILITACSRRGLFEDAFILFRSMLSCGVGQGMPTAVTV 178

Query: 154 LTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYS------CLMDLDAAIQI 207
             ++  C           +H   +K GL  D    N+++ MY+       ++D   A + 
Sbjct: 179 AVIVPACAKWRHLQTGRSVHCYVVKTGLESDTLCGNALVSMYAKCGGSRVMVD---AHRA 235

Query: 208 FREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILG-D 266
           F  + CKDV+SW  ++  +++ +  G+AL +F +M     + +   + +++ V +     
Sbjct: 236 FSSIRCKDVVSWNSVIAGYIENQLFGEALALFSQMISQGYLPNYSTVASILPVCSFTEFG 295

Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISG 326
              GK++H+ VV  G++ ++ +SN+++  YSK  ++    S+F  +  + +VSW  II+G
Sbjct: 296 RHHGKEVHSFVVRHGMEIDVSVSNALMTHYSKVLEMKDVESIFTSMDVRDIVSWNTIIAG 355

Query: 327 YVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPR 386
           YV NG    AL  F  +      + DS++ +S+LTA  ++  ++  +++HG  F+    +
Sbjct: 356 YVMNGYHHRALGLFQGLLSTGI-APDSVSFISLLTACAQVGDVKTGMEVHGYIFQRPVLQ 414

Query: 387 YRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
             S+ N L++ YS C   D A+  F ++   +D +SWN I+
Sbjct: 415 ETSLMNALVTFYSHCDRFDDAFRAFTDI-LNKDSISWNAIL 454



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 118/504 (23%), Positives = 234/504 (46%), Gaps = 83/504 (16%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           ID   S+ L+++Y K  ++K+ E++F  +  +++VSW+ +I GY +NG+H +++  F  +
Sbjct: 313 IDVSVSNALMTHYSKVLEMKDVESIFTSMDVRDIVSWNTIIAGYVMNGYHHRALGLFQGL 372

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGL---------------MVKFGLESDLF 107
           + +G+ P+S + + +L A A + +++    +HG                +V F    D F
Sbjct: 373 LSTGIAPDSVSFISLLTACAQVGDVKTGMEVHGYIFQRPVLQETSLMNALVTFYSHCDRF 432

Query: 108 E-------GLKNPYLVSCNAIVAGFINNKLFQQA--VLLFNFFRGSGLVP-NAVTMLTVI 157
           +        + N   +S NAI++    ++   +   VL+    RG      ++VT+L VI
Sbjct: 433 DDAFRAFTDILNKDSISWNAILSACATSEQHIEKFFVLMSEMCRGVNQCQWDSVTVLNVI 492

Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMY-SCLMDLDAAI----------- 205
                 G + + E  HG ++++G   + SV N++LD Y  C    DA+I           
Sbjct: 493 HMSTFCGIKMVRE-AHGWSLRVGYTGETSVANAILDAYVKCGYSHDASILFRNHAGRNIV 551

Query: 206 -------------------QIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSR 246
                               IF  M  KD+ SW  M+ L+   +  G A  +F  ++   
Sbjct: 552 TDNIMISCYLKSNCIEDAEVIFNHMAEKDLTSWNLMIQLYAQNDMDGQAFSLFNHLQSEG 611

Query: 247 IICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSR 306
           +  D V++ N++     L  ++  +Q HA ++   L+ ++ L  +++  YSKCG++ ++ 
Sbjct: 612 LKPDIVSIANILEACIHLCSVQLVRQCHAYMLRASLE-DIHLEGALVDAYSKCGNITNAY 670

Query: 307 SVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGEL 366
           ++F    +K LV++TA+I  Y  +G A EA+  F KM +      D + L ++L+A    
Sbjct: 671 NIFQISPKKDLVTFTAMIGCYAMHGMAEEAVELFSKMLKLDIRP-DHVVLTTLLSACS-- 727

Query: 367 AALEICLQLHGIAFEAGFPRYRSVQN------------CLISSYSKCGNVDLAYIVFEEM 414
                    H    +AG   ++S++             C++   ++ G++  AY+   +M
Sbjct: 728 ---------HAGLVDAGIKIFKSIREIHRVVPTAEHYACMVDLLARSGHIQDAYMFALDM 778

Query: 415 -GFLRDVVSWNTIIYGYGVNGHGE 437
                +  +W++++    V+G  E
Sbjct: 779 PPHAVNANAWSSLLGACKVHGKVE 802


>gi|449438472|ref|XP_004137012.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Cucumis sativus]
 gi|449493172|ref|XP_004159212.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Cucumis sativus]
          Length = 605

 Score =  226 bits (576), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 146/532 (27%), Positives = 261/532 (49%), Gaps = 64/532 (12%)

Query: 91  RSIHGLMVKFGLESD-----------------------LFEGLKNPYLVSCNAIVAGFIN 127
           R  H  +VK GLE+D                       +F+GL    +VS  +++ G++ 
Sbjct: 80  RQFHAHVVKSGLETDRFVGNSLLSLYFKLGSDSLLTRRVFDGLFVKDVVSWASMITGYVR 139

Query: 128 NKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSV 187
                 A+ LF     SG+ PN  T+  VI+ C  +G+  L +  HG+ ++ G   +  +
Sbjct: 140 EGKSGIAIELFWDMLDSGIEPNGFTLSAVIKACSEIGNLVLGKCFHGVVVRRGFDSNPVI 199

Query: 188 NNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFR-EMRKSR 246
            +S++DMY        A Q+F E+   D + WT ++  F   +   +AL  F  + R  R
Sbjct: 200 LSSLIDMYGRNSVSSDARQLFDELLEPDPVCWTTVISAFTRNDLYEEALGFFYLKHRAHR 259

Query: 247 IICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSR 306
           +  D     ++++    LG L++G+++HA+V+  G    +   +S++ MY KCG ++ S+
Sbjct: 260 LCPDNYTFGSVLTACGNLGRLRQGEEIHAKVIAYGFSGNVVTESSLVDMYGKCGAVEKSQ 319

Query: 307 SVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGEL 366
            +F++++ ++ VSW+A+++ Y  NG   +A+N F +M++     VD  +  +++ A   L
Sbjct: 320 RLFDRMSNRNSVSWSALLAVYCHNGDYEKAVNLFREMKE-----VDLYSFGTVIRACAGL 374

Query: 367 AALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTI 426
           AA+    ++H      G  R   V++ L+  Y+KCG ++ AY VF+ M   R++++WN++
Sbjct: 375 AAVTPGKEIHCQYIRKGGWRDVIVESALVDLYAKCGCINFAYRVFDRMP-TRNLITWNSM 433

Query: 427 IYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENK 486
           I+G+  NG    A+ ++  M + G  PD  +++ +L AC H GL +     F+ M  +  
Sbjct: 434 IHGFAQNGSSGIAIQIFEAMIKEGIKPDCISFIGLLFACSHTGLVDQARHYFDLMTGKYG 493

Query: 487 VKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCV------------ 534
           +KP  EHY C+VDLL RAG L +A  L          ++W  LL  C             
Sbjct: 494 IKPGVEHYNCMVDLLGRAGLLEEAENLIENAECRNDSSLWLVLLGACTTTCTNSATAERI 553

Query: 535 ---------------LH-------VGRFQDAEALRSGSQKKGIIKIPGISFL 564
                          +H       VGR+ DA  +R   + + + K+PG S++
Sbjct: 554 AKKLMELEPQCYLSYVHLANVYRAVGRWDDAVKVRELMKNRQLKKMPGQSWM 605



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/357 (28%), Positives = 169/357 (47%), Gaps = 7/357 (1%)

Query: 155 TVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCL-MDLDAAIQIFREMEC 213
           ++++ C+ + S       H   +K GL  D  V NS+L +Y  L  D     ++F  +  
Sbjct: 65  SLLQTCIKVDSFTRGRQFHAHVVKSGLETDRFVGNSLLSLYFKLGSDSLLTRRVFDGLFV 124

Query: 214 KDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQL 273
           KDV+SW  M+  +V    +G A+++F +M  S I  +   L  +I   + +G+L  GK  
Sbjct: 125 KDVVSWASMITGYVREGKSGIAIELFWDMLDSGIEPNGFTLSAVIKACSEIGNLVLGKCF 184

Query: 274 HAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA 333
           H  VV  G  S   + +S+I MY +      +R +F+++ E   V WT +IS + +N   
Sbjct: 185 HGVVVRRGFDSNPVILSSLIDMYGRNSVSSDARQLFDELLEPDPVCWTTVISAFTRNDLY 244

Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC 393
            EAL  F    +      D+ T  S+LTA G L  L    ++H      GF      ++ 
Sbjct: 245 EEALGFFYLKHRAHRLCPDNYTFGSVLTACGNLGRLRQGEEIHAKVIAYGFSGNVVTESS 304

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           L+  Y KCG V+ +  +F+ M   R+ VSW+ ++  Y  NG  E A+ L+ +M E     
Sbjct: 305 LVDMYGKCGAVEKSQRLFDRMSN-RNSVSWSALLAVYCHNGDYEKAVNLFREMKEV---- 359

Query: 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
           D  ++ +++ AC        G  I  Q I +   +        +VDL A+ GC++ A
Sbjct: 360 DLYSFGTVIRACAGLAAVTPGKEIHCQYIRKGGWRDVIVE-SALVDLYAKCGCINFA 415



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 88/390 (22%), Positives = 173/390 (44%), Gaps = 33/390 (8%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS-HM 62
           +P   S L+  Y ++    +A  LFDE+ E + V W+ VI  ++ N  +E+++  F    
Sbjct: 196 NPVILSSLIDMYGRNSVSSDARQLFDELLEPDPVCWTTVISAFTRNDLYEEALGFFYLKH 255

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
               L P+++T   VL A   L  L     IH  ++ +G   +                 
Sbjct: 256 RAHRLCPDNYTFGSVLTACGNLGRLRQGEEIHAKVIAYGFSGNVVTESSLVDMYGKCGAV 315

Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                LF+ + N   VS +A++A + +N  +++AV LF   +   L     +  TVIR C
Sbjct: 316 EKSQRLFDRMSNRNSVSWSALLAVYCHNGDYEKAVNLFREMKEVDL----YSFGTVIRAC 371

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             L +    + IH   I+ G   DV V ++++D+Y+    ++ A ++F  M  +++I+W 
Sbjct: 372 AGLAAVTPGKEIHCQYIRKGGWRDVIVESALVDLYAKCGCINFAYRVFDRMPTRNLITWN 431

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
            M+  F     +G A++IF  M K  I  D ++ + L+   +  G + + +  +  ++ G
Sbjct: 432 SMIHGFAQNGSSGIAIQIFEAMIKEGIKPDCISFIGLLFACSHTGLVDQARH-YFDLMTG 490

Query: 281 --GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
             G++  +   N ++ +  + G L+ + ++      ++  S   ++ G     C   A  
Sbjct: 491 KYGIKPGVEHYNCMVDLLGRAGLLEEAENLIENAECRNDSSLWLVLLGACTTTCTNSATA 550

Query: 339 QFIK---MRQEKTDSVDSITLVSILTASGE 365
           + I    M  E    +  + L ++  A G 
Sbjct: 551 ERIAKKLMELEPQCYLSYVHLANVYRAVGR 580


>gi|356523586|ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 604

 Score =  226 bits (576), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 156/480 (32%), Positives = 235/480 (48%), Gaps = 42/480 (8%)

Query: 86  NLELARSIHGLMVKFGLESDLFEGLK----------------------NPYLVSCNAIVA 123
           NL+    IH  ++K  L  DLF   K                      +P +   N+I+ 
Sbjct: 33  NLDSVNQIHAQVLKANLHQDLFVAPKLIAAFSLCRHLASAVNVFNHVPHPNVHLYNSIIR 92

Query: 124 GFINNKLFQQAVLLFNFF---RGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLG 180
              +N       L FN F   + +GL P+  T   +++ C    S  L  +IH    K G
Sbjct: 93  AHAHNT--SHPSLPFNAFFQMQKNGLFPDNFTYPFLLKACTGPSSLPLVRMIHAHVEKFG 150

Query: 181 LILDVSVNNSVLDMYSCL--MDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKI 238
              D+ V NS++D YS      LD A+ +F  M+ +DV++W  M+G  V       A K+
Sbjct: 151 FYGDIFVPNSLIDSYSRCGSAGLDGAMSLFLAMKERDVVTWNSMIGGLVRCGELEGACKL 210

Query: 239 FREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSK 298
           F EM +     D V+   ++   A  G++ R  +L  ++     Q  +   ++++  YSK
Sbjct: 211 FDEMPER----DMVSWNTMLDGYAKAGEMDRAFELFERMP----QRNIVSWSTMVCGYSK 262

Query: 299 CGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVS 358
            GD+D +R +F++   K++V WT II+GY + G  REA   + KM +      D   L+S
Sbjct: 263 GGDMDMARVLFDRCPAKNVVLWTTIIAGYAEKGFVREATELYGKMEEAGLRPDDGF-LIS 321

Query: 359 ILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLR 418
           IL A  E   L +  ++H       F     V N  I  Y+KCG +D A+ VF  M   +
Sbjct: 322 ILAACAESGMLGLGKRIHASMRRWRFRCGTKVLNAFIDMYAKCGCLDAAFDVFSGMMAKK 381

Query: 419 DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIF 478
           DVVSWN++I G+ ++GHGE AL L+ +M   G  PD+ T++ +L AC HAGL N+G   F
Sbjct: 382 DVVSWNSMIQGFAMHGHGEKALELFSRMVPEGFEPDTYTFVGLLCACTHAGLVNEGRKYF 441

Query: 479 NQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN--IWRALLSGCVLH 536
             M +   + P  EHYGC++DLL R G L +A  L   +   M PN  I   LL+ C +H
Sbjct: 442 YSMEKVYGIVPQVEHYGCMMDLLGRGGHLKEAFTLLRSM--PMEPNAIILGTLLNACRMH 499



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 120/517 (23%), Positives = 234/517 (45%), Gaps = 43/517 (8%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEK-SMKAFSHM 62
           D + + KL++ +     +  A N+F+ +P  NV  ++ +I  ++ N  H      AF  M
Sbjct: 52  DLFVAPKLIAAFSLCRHLASAVNVFNHVPHPNVHLYNSIIRAHAHNTSHPSLPFNAFFQM 111

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
             +GL P++FT   +L A  G  +L L R IH  + KFG   D                 
Sbjct: 112 QKNGLFPDNFTYPFLLKACTGPSSLPLVRMIHAHVEKFGFYGDIFVPNSLIDSYSRCGSA 171

Query: 106 -------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
                  LF  +K   +V+ N+++ G +     + A  LF+      +    V+  T++ 
Sbjct: 172 GLDGAMSLFLAMKERDVVTWNSMIGGLVRCGELEGACKLFDEMPERDM----VSWNTMLD 227

Query: 159 GCVALG--SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
           G    G   RA  EL   +  +     ++   ++++  YS   D+D A  +F     K+V
Sbjct: 228 GYAKAGEMDRAF-ELFERMPQR-----NIVSWSTMVCGYSKGGDMDMARVLFDRCPAKNV 281

Query: 217 ISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQ 276
           + WT ++  + +  +  +A +++ +M ++ +  D   L+++++  A  G L  GK++HA 
Sbjct: 282 VLWTTIIAGYAEKGFVREATELYGKMEEAGLRPDDGFLISILAACAESGMLGLGKRIHAS 341

Query: 277 VVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFN-QITEKSLVSWTAIISGYVQNGCARE 335
           +     +   ++ N+ I MY+KCG LD++  VF+  + +K +VSW ++I G+  +G   +
Sbjct: 342 MRRWRFRCGTKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEK 401

Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN--C 393
           AL  F +M  E  +  D+ T V +L A    A L    + +  + E  +     V++  C
Sbjct: 402 ALELFSRMVPEGFEP-DTYTFVGLLCACTH-AGLVNEGRKYFYSMEKVYGIVPQVEHYGC 459

Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
           ++    + G++  A+ +   M    + +   T++    ++   + A A+  ++ +  E  
Sbjct: 460 MMDLLGRGGHLKEAFTLLRSMPMEPNAIILGTLLNACRMHNDVDFARAVCEQLFKV-EPT 518

Query: 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPS 490
           D   Y  + N    AG   +   +  QM+     KPS
Sbjct: 519 DPGNYSLLSNIYAQAGDWMNVANVRLQMMNTGGQKPS 555


>gi|302799324|ref|XP_002981421.1| hypothetical protein SELMODRAFT_114363 [Selaginella moellendorffii]
 gi|300150961|gb|EFJ17609.1| hypothetical protein SELMODRAFT_114363 [Selaginella moellendorffii]
          Length = 789

 Score =  226 bits (576), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 170/620 (27%), Positives = 286/620 (46%), Gaps = 63/620 (10%)

Query: 8   SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
           S+ LL  Y +    ++AE L D +P +N +SW+ VI   +  G   +S+  F  M+  G 
Sbjct: 50  SNHLLHMYARLESSRDAELLLDRMPRRNALSWNAVIRANAQAGDFPRSLLFFQRMLQDGS 109

Query: 68  LPNSFTMVGVLVAAAGLQNLELARS-------------------IHGLMVKFGLESDLFE 108
           LP++   + ++ A   +Q  E+ +                    ++G   +     D F+
Sbjct: 110 LPDAVVFLSLIKAPRTIQEGEIVQEFAEKSGFDRSFVVGTALIGMYGRCGRLDRAKDAFD 169

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR-A 167
            ++   +VS NA++  +      +Q++ +F      G+ PNAVT++ +      + ++  
Sbjct: 170 RIQERGVVSWNALITVYSRGDEKEQSLRVFREMLLQGIAPNAVTIICIASAVAGIAAKIT 229

Query: 168 LC-ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
            C  LIH  +I  GLI   +V NS+++++    ++  A  IF +M+ +DV SW  M+  F
Sbjct: 230 TCGNLIHSCSIDSGLISVTTVANSIINLFGRGGNITRANDIFEKMDRRDVCSWNTMISAF 289

Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
               ++  AL ++  M    I  D V  +N++       DL+RG+ +H  V   G  S+L
Sbjct: 290 AQNGHSSGALDLYGRMT---IRPDGVTFVNVLEACDCPDDLERGESIHRDVRAHGYDSDL 346

Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
            ++ ++++MY +CG LD +  VF  I    +++  AII+ + Q G A  +L  F +M Q 
Sbjct: 347 IVATALVSMYRRCGRLDRAAEVFAAIQHPGVITLNAIIAAHAQFGRADGSLLHFRQMLQL 406

Query: 347 KTDSVDSITLVSILTASGELAALEICLQ-LHGIAFEAG---FPRYRSVQNCLISSYSKCG 402
                   TLV++L A     A     + LH    E      P    V+N L++ Y+KCG
Sbjct: 407 GIRP-SKFTLVAVLGACATSGAAASAGRDLHRWMAECPGDCDPHDILVRNALVNMYAKCG 465

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
           ++D A  +F+      +V +WN I+ GY  +G+   A+ L ++M   G  PD  ++ + L
Sbjct: 466 DLDAARGIFD-AAPQGNVSTWNAIMAGYAQHGYANMAVRLLYEMQLAGISPDPISFTAAL 524

Query: 463 NACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMG 522
           +A  HA    DG  IF  +  +  + PS EHYG VVDLL RAG L +A G    +     
Sbjct: 525 SASSHARQVEDGARIFYAISRDYGLIPSVEHYGAVVDLLGRAGWLEEAEGFLRSMAIAAD 584

Query: 523 PNIWRALLSGCVLH---------------------------------VGRFQDAEALRSG 549
              W ALL  C +H                                  GR+ +AE +R  
Sbjct: 585 AAAWMALLGACRIHKDQDRAMRAAEAIVAIDPSHGASYTVLSNVYSAAGRWDEAEEIRRR 644

Query: 550 SQKKGIIKIPGISFLNSTSR 569
             + G  K PG S++   +R
Sbjct: 645 MSENGARKEPGRSWIEVKNR 664



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 151/299 (50%), Gaps = 16/299 (5%)

Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           IH   I+ G    + ++N +L MY+ L     A  +   M  ++ +SW  ++        
Sbjct: 34  IHRRVIESGYGDHLFLSNHLLHMYARLESSRDAELLLDRMPRRNALSWNAVIRANAQ--- 90

Query: 232 AGD---ALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
           AGD   +L  F+ M +   + D V  L+LI        ++ G+ +       G      +
Sbjct: 91  AGDFPRSLLFFQRMLQDGSLPDAVVFLSLIKAPRT---IQEGEIVQEFAEKSGFDRSFVV 147

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
             ++I MY +CG LD ++  F++I E+ +VSW A+I+ Y +     ++L  F +M  +  
Sbjct: 148 GTALIGMYGRCGRLDRAKDAFDRIQERGVVSWNALITVYSRGDEKEQSLRVFREMLLQGI 207

Query: 349 DSVDSITLVSILTASGELAA-LEICLQL-HGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
            + +++T++ I +A   +AA +  C  L H  + ++G     +V N +I+ + + GN+  
Sbjct: 208 -APNAVTIICIASAVAGIAAKITTCGNLIHSCSIDSGLISVTTVANSIINLFGRGGNITR 266

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
           A  +FE+M   RDV SWNT+I  +  NGH   AL LY +MT     PD  T++++L AC
Sbjct: 267 ANDIFEKMD-RRDVCSWNTMISAFAQNGHSSGALDLYGRMTIR---PDGVTFVNVLEAC 321



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 129/256 (50%), Gaps = 14/256 (5%)

Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRS---VFNQITEKSLVSWTAI 323
           L++G+++H +V+  G    L LSN ++ MY++   L+SSR    + +++  ++ +SW A+
Sbjct: 28  LEQGRKIHRRVIESGYGDHLFLSNHLLHMYAR---LESSRDAELLLDRMPRRNALSWNAV 84

Query: 324 ISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG 383
           I    Q G    +L  F +M Q+ +   D++  +S++ A   +   EI  +    A ++G
Sbjct: 85  IRANAQAGDFPRSLLFFQRMLQDGS-LPDAVVFLSLIKAPRTIQEGEIVQEF---AEKSG 140

Query: 384 FPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALY 443
           F R   V   LI  Y +CG +D A   F+ +   R VVSWN +I  Y      E +L ++
Sbjct: 141 FDRSFVVGTALIGMYGRCGRLDRAKDAFDRIQ-ERGVVSWNALITVYSRGDEKEQSLRVF 199

Query: 444 HKMTETGEVPDSSTYLSILNACG--HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLL 501
            +M   G  P++ T + I +A     A +T  G +I +  I+   +  +      +++L 
Sbjct: 200 REMLLQGIAPNAVTIICIASAVAGIAAKITTCGNLIHSCSIDSGLISVTTV-ANSIINLF 258

Query: 502 ARAGCLSDASGLAGKL 517
            R G ++ A+ +  K+
Sbjct: 259 GRGGNITRANDIFEKM 274


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  226 bits (576), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 140/497 (28%), Positives = 239/497 (48%), Gaps = 54/497 (10%)

Query: 119 NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIK 178
           ++I+  + ++ L   +   FN  R   + PN     ++++    L    L   +H  T++
Sbjct: 79  SSIIKCYTSHSLLHLSFSSFNSMRSLSVPPNRHVFPSLLKASTLLKHHKLAHSLHACTVR 138

Query: 179 LGLILDVSVNNSVLDMYSCLMD---------------LDAAIQIFREMECKDVISWTRMM 223
           LGL  D+ + N++++ Y+   +               +D   ++F  M  +DV+SW  ++
Sbjct: 139 LGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWNTVI 198

Query: 224 GLFVDFEYAGDALKIFREMRKS-RIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL 282
             F       +AL + REM K+ ++  D+  L +++ + A   D+ +GK++H   V  G 
Sbjct: 199 AGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGYAVRNGF 258

Query: 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342
             ++ + +S+I MY+KC  L+ S   F  +  K  +SW +II+G VQNG     L  F +
Sbjct: 259 DGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQNGEFDRGLGFFRR 318

Query: 343 MRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
           M +E    + +++  S++ A   L AL +  QLHG     GF     + + L+  Y+KCG
Sbjct: 319 MLKENVKPM-AVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDNEFIASSLVDMYAKCG 377

Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
           N+ +A  VF+ +   RD+V+W  II G  ++GH   A++L+  M E G  P    ++++L
Sbjct: 378 NIKMARYVFDRID-KRDMVAWTAIIMGCAMHGHALDAVSLFENMLEDGVRPCYVAFMAVL 436

Query: 463 NACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMG 522
            AC HAGL ++G   FN M  +  + P  EHY  V DLL RAG L +A       + G+ 
Sbjct: 437 TACSHAGLVDEGWRYFNSMERDFGIAPGLEHYAAVADLLGRAGRLEEAYDFISN-MRGVQ 495

Query: 523 P--NIWRALLSGCVLH---------------------------------VGRFQDAEALR 547
           P  ++W  LL+ C  H                                   R++DA  LR
Sbjct: 496 PTGSVWSILLAACRAHKSVELAEKVLDKLLSVDSENMGAYVLMSNIYSAAQRWKDAARLR 555

Query: 548 SGSQKKGIIKIPGISFL 564
              +KKG+ K P  S++
Sbjct: 556 IHMRKKGLKKTPACSWI 572



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 95/363 (26%), Positives = 173/363 (47%), Gaps = 39/363 (10%)

Query: 38  SWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLM 97
           +WS +I  Y+ +     S  +F+ M    + PN      +L A+  L++ +LA S+H   
Sbjct: 77  AWSSIIKCYTSHSLLHLSFSSFNSMRSLSVPPNRHVFPSLLKASTLLKHHKLAHSLHACT 136

Query: 98  VKFGLESDLF--EGLKNPY-----------------------------------LVSCNA 120
           V+ GL+SDL+    L N Y                                   +VS N 
Sbjct: 137 VRLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWNT 196

Query: 121 IVAGFINNKLFQQAV-LLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKL 179
           ++AGF  N ++ +A+ ++    +   L P++ T+ +++            + IHG  ++ 
Sbjct: 197 VIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGYAVRN 256

Query: 180 GLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIF 239
           G   DV + +S++DMY+    L+ +++ F  +  KD ISW  ++   V        L  F
Sbjct: 257 GFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQNGEFDRGLGFF 316

Query: 240 REMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKC 299
           R M K  +    V+  ++I   A L  L  G+QLH  +V  G      +++S++ MY+KC
Sbjct: 317 RRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDNEFIASSLVDMYAKC 376

Query: 300 GDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSI 359
           G++  +R VF++I ++ +V+WTAII G   +G A +A++ F  M ++       +  +++
Sbjct: 377 GNIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLEDGVRPC-YVAFMAV 435

Query: 360 LTA 362
           LTA
Sbjct: 436 LTA 438



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 145/290 (50%), Gaps = 25/290 (8%)

Query: 6   YNSSKLLSNYFKSGK--IKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           +N+ K+   + K G+  I   + +FD +P ++VVSW+ VI G++ NG + +++     M 
Sbjct: 159 HNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWNTVIAGFAQNGMYVEALDMVREMG 218

Query: 64  LSG-LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG------------- 109
            +G L P+SFT+  +L   A   ++   + IHG  V+ G + D+F G             
Sbjct: 219 KNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRL 278

Query: 110 ---LKNPYL------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
              L+  Y+      +S N+I+AG + N  F + +  F       + P AV+  +VI  C
Sbjct: 279 ECSLRAFYILPRKDAISWNSIIAGCVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPAC 338

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
             L + +L   +HG  ++LG   +  + +S++DMY+   ++  A  +F  ++ +D+++WT
Sbjct: 339 AHLTALSLGRQLHGCIVRLGFDDNEFIASSLVDMYAKCGNIKMARYVFDRIDKRDMVAWT 398

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG 270
            ++       +A DA+ +F  M +  +    VA + +++  +  G +  G
Sbjct: 399 AIIMGCAMHGHALDAVSLFENMLEDGVRPCYVAFMAVLTACSHAGLVDEG 448



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 77/183 (42%), Gaps = 22/183 (12%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D +  S L+  Y K  +++ +   F  +P K+ +SW+ +I G   NG  ++ +  F  M+
Sbjct: 261 DVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQNGEFDRGLGFFRRML 320

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
              + P + +   V+ A A L  L L R +HG +V+ G + +                  
Sbjct: 321 KENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDNEFIASSLVDMYAKCGNIK 380

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               +F+ +    +V+  AI+ G   +     AV LF      G+ P  V  + V+  C 
Sbjct: 381 MARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLEDGVRPCYVAFMAVLTACS 440

Query: 162 ALG 164
             G
Sbjct: 441 HAG 443


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  226 bits (575), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 166/561 (29%), Positives = 274/561 (48%), Gaps = 65/561 (11%)

Query: 26  NLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQ 85
           N+   +P      ++ ++H Y++      + + F  +      PN F+            
Sbjct: 31  NIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQ----PNLFS----------WN 76

Query: 86  NLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFN-FFRGS 144
           NL LA S  GL+ +  +ES  FE L +   V+ N ++ G+  + L   AV  +N   R  
Sbjct: 77  NLLLAYSKAGLISE--MES-TFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDF 133

Query: 145 GLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYS---CLMD- 200
                 VT++T+++   + G  +L + IHG  IKLG    + V + +L MY+   C+ D 
Sbjct: 134 SANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDA 193

Query: 201 ---------------------------LDAAIQIFREMECKDVISWTRMMGLFVDFEYAG 233
                                      ++ A+Q+FR ME KD +SW  M+        A 
Sbjct: 194 KKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGME-KDSVSWAAMIKGLAQNGLAK 252

Query: 234 DALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSII 293
           +A++ FREM+   +  D     +++     LG +  GKQ+HA ++    Q  + + +++I
Sbjct: 253 EAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALI 312

Query: 294 AMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDS 353
            MY KC  L  +++VF+++ +K++VSWTA++ GY Q G A EA+  F+ M++   D  D 
Sbjct: 313 DMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDP-DH 371

Query: 354 ITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEE 413
            TL   ++A   +++LE   Q HG A  +G   Y +V N L++ Y KCG++D +  +F E
Sbjct: 372 YTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNE 431

Query: 414 MGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTND 473
           M  +RD VSW  ++  Y   G     + L+ KM + G  PD  T   +++AC  AGL   
Sbjct: 432 MN-VRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEK 490

Query: 474 GLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM--GPNI--WRAL 529
           G   F  M  E  + PS  HY C++DL +R+G L +A     + + GM   P+   W  L
Sbjct: 491 GQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAM----RFINGMPFPPDAIGWTTL 546

Query: 530 LSGCV----LHVGRFQDAEAL 546
           LS C     L +G++  AE+L
Sbjct: 547 LSACRNKGNLEIGKWA-AESL 566



 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 131/483 (27%), Positives = 226/483 (46%), Gaps = 59/483 (12%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  + ++ + LL  Y K+G I E E+ F+++P+++ V+W+++I GYS++G    ++KA++
Sbjct: 68  PQPNLFSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYN 127

Query: 61  HMM--LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES-------------- 104
            MM   S  L    T++ +L  ++   ++ L + IHG ++K G ES              
Sbjct: 128 TMMRDFSANL-TRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYAN 186

Query: 105 ---------------------------------------DLFEGLKNPYLVSCNAIVAGF 125
                                                   LF G++    VS  A++ G 
Sbjct: 187 VGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDS-VSWAAMIKGL 245

Query: 126 INNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDV 185
             N L ++A+  F   +  GL  +     +V+  C  LG+    + IH   I+      +
Sbjct: 246 AQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHI 305

Query: 186 SVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKS 245
            V ++++DMY     L  A  +F  M+ K+V+SWT M+  +     A +A+KIF +M++S
Sbjct: 306 YVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRS 365

Query: 246 RIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSS 305
            I  D   L   IS  A +  L+ G Q H + +  GL   + +SNS++ +Y KCGD+D S
Sbjct: 366 GIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDS 425

Query: 306 RSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGE 365
             +FN++  +  VSWTA++S Y Q G A E +  F KM Q      D +TL  +++A   
Sbjct: 426 TRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKP-DGVTLTGVISACSR 484

Query: 366 LAALEICLQLHGI-AFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWN 424
              +E   +   +   E G        +C+I  +S+ G ++ A      M F  D + W 
Sbjct: 485 AGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWT 544

Query: 425 TII 427
           T++
Sbjct: 545 TLL 547



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 77/350 (22%), Positives = 137/350 (39%), Gaps = 73/350 (20%)

Query: 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSL------------- 317
           K +H  ++      E  L N+I+  Y+       +R VF++I + +L             
Sbjct: 26  KMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKA 85

Query: 318 ------------------VSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSI 359
                             V+W  +I GY  +G    A+  +  M ++ + ++  +TL+++
Sbjct: 86  GLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTM 145

Query: 360 LTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM----- 414
           L  S     + +  Q+HG   + GF  Y  V + L+  Y+  G +  A  VF  +     
Sbjct: 146 LKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNT 205

Query: 415 ------------------------GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
                                   G  +D VSW  +I G   NG  + A+  + +M   G
Sbjct: 206 VMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQG 265

Query: 451 EVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY---GCVVDLLARAGCL 507
              D   + S+L ACG  G  N+G  I   +I  N     Q+H      ++D+  +  CL
Sbjct: 266 LKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTN----FQDHIYVGSALIDMYCKCKCL 321

Query: 508 SDASGLAGKLLEGMGPNI--WRALLSGCVLHVGRFQDAEALRSGSQKKGI 555
             A  +  ++ +    N+  W A++ G     GR ++A  +    Q+ GI
Sbjct: 322 HYAKTVFDRMKQ---KNVVSWTAMVVG-YGQTGRAEEAVKIFLDMQRSGI 367


>gi|357464861|ref|XP_003602712.1| hypothetical protein MTR_3g098230 [Medicago truncatula]
 gi|355491760|gb|AES72963.1| hypothetical protein MTR_3g098230 [Medicago truncatula]
          Length = 867

 Score =  226 bits (575), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 165/595 (27%), Positives = 292/595 (49%), Gaps = 67/595 (11%)

Query: 3   IDPYNSSKLLSNYFKSGKIK-EAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           +D +  + L+S Y K G +  +A  +FD I  K+VVSW+ +I G + NG  +++   FS 
Sbjct: 173 MDTFAGNALVSMYAKCGLVACDAYAVFDSIIHKDVVSWNAMIAGLAENGLLKEAFSLFSL 232

Query: 62  MMLSGLLPNSFTMVGVL-VAAAGLQNL--ELARSIHGLMVKFG-LESD------------ 105
           MM   + PN  T+  +L V A+  +N+     R IH  ++++  L +D            
Sbjct: 233 MMKGSVKPNYATVANILPVCASFDENIAHRCGRQIHSYVLQWPELSADVSVCNALLSFYL 292

Query: 106 ----------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLF-NFFRGSGLVPNAVTML 154
                     LF  +    LVS N I+AG+  N  + +++ +F N      L+ ++VTM+
Sbjct: 293 KVGRTKEAESLFWAMDARDLVSWNTIIAGYALNGEWLKSLHVFGNLVSLEMLLLDSVTMV 352

Query: 155 TVIRGCVALGSRALCELIHGLTIKLGLIL-DVSVNNSVLDMYSCLMDLDAAIQIFREMEC 213
           +++  C  L +    + +H   ++   +  D S  N+++  Y+    ++ A   F  +  
Sbjct: 353 SILPACAQLDNLQAGKQVHAYILRHPFLFEDTSAGNALVSFYAKCGYIEEAYHTFSMISR 412

Query: 214 KDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQL 273
           KD+ISW  ++  F +  +    L +   M K  I  D+V +L +I   A L  +K+ K++
Sbjct: 413 KDLISWNSILDAFGEKRHHSRFLSLLHVMLKLDIRPDSVTILTIIHFCASLLRVKKVKEI 472

Query: 274 HAQVVLGG---LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK-SLVSWTAIISGYV- 328
           H   +  G     +   + N+I+  YSKCG+++ +  +F  ++EK +LV+  ++ISGYV 
Sbjct: 473 HGYSIRSGSLLCATAPTVGNAILDAYSKCGNIEYANKMFQNLSEKRNLVTCNSLISGYVG 532

Query: 329 ------------------------------QNGCAREALNQFIKMRQEKTDSVDSITLVS 358
                                         +N C  +AL  F+K++ +     D +T++S
Sbjct: 533 LGSHYDANMIFSGMSETDLTTWNLMVRVYAENDCPEQALELFLKLQTQGMKP-DVVTIMS 591

Query: 359 ILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLR 418
           ++    ++A++ +  Q HG    + F     ++  L+ +Y+KCG +  AY +F+     +
Sbjct: 592 LIPVCTQMASVHLLRQCHGYIIRSSFEDLH-LKGTLLDAYAKCGIIGYAYKIFQS-SVDK 649

Query: 419 DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIF 478
           D+V +  +I GY ++G  E AL  +  M   G  PD   + SIL+AC HAG   +GL IF
Sbjct: 650 DLVMFTAMIGGYAMHGMSEKALETFSHMLNMGIKPDHVIFTSILSACSHAGRIAEGLKIF 709

Query: 479 NQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGC 533
           + + + + +KP+ E + CVVDLLAR G +S+A     K+      NIW  LL  C
Sbjct: 710 DSIEKIHGMKPTIEQFACVVDLLARGGHVSEAYSFVTKIPIEANANIWGTLLGAC 764



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 142/528 (26%), Positives = 255/528 (48%), Gaps = 74/528 (14%)

Query: 7   NSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKS-MKAFSHMMLS 65
            S  LL+ Y K G + +   LFD+    + V W+IV+ GYS +G ++   MK F  M  S
Sbjct: 74  TSKALLNMYAKCGMLDDCHKLFDQFGRCDPVIWNIVLSGYSRSGKNDADVMKVFRAMHSS 133

Query: 66  G-LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPY----LVSC 118
           G ++P+S T+  VL   A   NL   +S+HG ++K G E D F G  L + Y    LV+C
Sbjct: 134 GEVMPSSVTIATVLPVCARSGNLNGGKSVHGYVIKSGFEMDTFAGNALVSMYAKCGLVAC 193

Query: 119 -----------------NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
                            NA++AG   N L ++A  LF+      + PN  T+  ++  C 
Sbjct: 194 DAYAVFDSIIHKDVVSWNAMIAGLAENGLLKEAFSLFSLMMKGSVKPNYATVANILPVCA 253

Query: 162 ALG---SRALCELIHGLTIKLG-LILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
           +     +      IH   ++   L  DVSV N++L  Y  +     A  +F  M+ +D++
Sbjct: 254 SFDENIAHRCGRQIHSYVLQWPELSADVSVCNALLSFYLKVGRTKEAESLFWAMDARDLV 313

Query: 218 SW-TRMMGLFVDFEYAGDALKIFREMRK-SRIICDTVALLNLISVNAILGDLKRGKQLHA 275
           SW T + G  ++ E+   +L +F  +     ++ D+V +++++   A L +L+ GKQ+HA
Sbjct: 314 SWNTIIAGYALNGEWL-KSLHVFGNLVSLEMLLLDSVTMVSILPACAQLDNLQAGKQVHA 372

Query: 276 QVVLGG-LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
            ++    L  +    N++++ Y+KCG ++ +   F+ I+ K L+SW +I+  + +    +
Sbjct: 373 YILRHPFLFEDTSAGNALVSFYAKCGYIEEAYHTFSMISRKDLISWNSILDAFGE----K 428

Query: 335 EALNQFIKMRQE--KTD-SVDSITLVSILTASGELAALEICLQLHGIAFEAG---FPRYR 388
              ++F+ +     K D   DS+T+++I+     L  ++   ++HG +  +G        
Sbjct: 429 RHHSRFLSLLHVMLKLDIRPDSVTILTIIHFCASLLRVKKVKEIHGYSIRSGSLLCATAP 488

Query: 389 SVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGY-GVNGH------------ 435
           +V N ++ +YSKCGN++ A  +F+ +   R++V+ N++I GY G+  H            
Sbjct: 489 TVGNAILDAYSKCGNIEYANKMFQNLSEKRNLVTCNSLISGYVGLGSHYDANMIFSGMSE 548

Query: 436 ------------------GETALALYHKMTETGEVPDSSTYLSILNAC 465
                              E AL L+ K+   G  PD  T +S++  C
Sbjct: 549 TDLTTWNLMVRVYAENDCPEQALELFLKLQTQGMKPDVVTIMSLIPVC 596



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 121/462 (26%), Positives = 219/462 (47%), Gaps = 33/462 (7%)

Query: 37  VSWSIVIHGYSINGFHEKSMKAFSHMML--SGLLPNSFTMVGVLVAAAGLQNLELARSIH 94
           ++W+  I    ++  H +++  F H +   +   P+   +  +L + + L    L + +H
Sbjct: 1   MTWASTIRSLCVDSRHNEALSFFHHCLKDSAAFKPDHEVLAAILKSCSALLASNLGKCLH 60

Query: 95  GLMVKFGLES----------------------DLFEGLKNPYLVSCNAIVAGFINNKLFQ 132
             +VK G  S                       LF+       V  N +++G+  +    
Sbjct: 61  SYVVKQGHVSCHVTSKALLNMYAKCGMLDDCHKLFDQFGRCDPVIWNIVLSGYSRSGKND 120

Query: 133 QAVL-LFNFFRGSG-LVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNS 190
             V+ +F     SG ++P++VT+ TV+  C   G+    + +HG  IK G  +D    N+
Sbjct: 121 ADVMKVFRAMHSSGEVMPSSVTIATVLPVCARSGNLNGGKSVHGYVIKSGFEMDTFAGNA 180

Query: 191 VLDMYS-CLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIIC 249
           ++ MY+ C +    A  +F  +  KDV+SW  M+    +     +A  +F  M K  +  
Sbjct: 181 LVSMYAKCGLVACDAYAVFDSIIHKDVVSWNAMIAGLAENGLLKEAFSLFSLMMKGSVKP 240

Query: 250 DTVALLNLISVNAILGD---LKRGKQLHAQVV-LGGLQSELRLSNSIIAMYSKCGDLDSS 305
           +   + N++ V A   +    + G+Q+H+ V+    L +++ + N++++ Y K G    +
Sbjct: 241 NYATVANILPVCASFDENIAHRCGRQIHSYVLQWPELSADVSVCNALLSFYLKVGRTKEA 300

Query: 306 RSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGE 365
            S+F  +  + LVSW  II+GY  NG   ++L+ F  +   +   +DS+T+VSIL A  +
Sbjct: 301 ESLFWAMDARDLVSWNTIIAGYALNGEWLKSLHVFGNLVSLEMLLLDSVTMVSILPACAQ 360

Query: 366 LAALEICLQLHGIAFEAGFP-RYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWN 424
           L  L+   Q+H       F     S  N L+S Y+KCG ++ AY  F  M   +D++SWN
Sbjct: 361 LDNLQAGKQVHAYILRHPFLFEDTSAGNALVSFYAKCGYIEEAYHTF-SMISRKDLISWN 419

Query: 425 TIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           +I+  +G   H    L+L H M +    PDS T L+I++ C 
Sbjct: 420 SILDAFGEKRHHSRFLSLLHVMLKLDIRPDSVTILTIIHFCA 461


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  226 bits (575), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 152/571 (26%), Positives = 269/571 (47%), Gaps = 97/571 (16%)

Query: 85  QNLELARSIHGLMVKFGLES-------------------------DLFEGLKNPYLVSCN 119
           + L+  R IH  M+K GL +                          +FE ++ P L+  N
Sbjct: 13  KTLQSLRIIHAQMIKTGLHNTNYALSRLLEFCILSPNFDGLPYAISVFETIQEPNLLIWN 72

Query: 120 AIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKL 179
            +  G   +     A+ L+      GL+PN+ T   +++ C  L      + IHG  +KL
Sbjct: 73  TMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQQIHGHVLKL 132

Query: 180 GLILDVSVNNSVLDMY---------------SCLMD----------------LDAAIQIF 208
           G  LD+ V+ S++ MY               S   D                +++A ++F
Sbjct: 133 GYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRGYIESAQKMF 192

Query: 209 REMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLK 268
            E+  KDV+SW  ++  + D     +AL +F+EM K+ +  D   ++ ++S  A  G ++
Sbjct: 193 DEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQ 252

Query: 269 RGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYV 328
            G+Q+H+ +   GL S L++ N++I +YSKCG+++++  +F  ++ K ++SW  +I GY 
Sbjct: 253 LGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYT 312

Query: 329 QNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFE--AGFPR 386
                +EAL  F +M +   +  D +T++SIL A  +L A++    +H    +   G   
Sbjct: 313 HLNLYKEALLLFQEMLRSGENPND-VTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTN 371

Query: 387 YRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM 446
             S++  LI  Y+KCG+++ A+ VF  M   R + + N +I+G+ ++G    A  ++ +M
Sbjct: 372 ASSLRTSLIDMYAKCGDIEAAHQVFNSMHH-RTLSACNAMIFGFAMHGRANAAFDIFSRM 430

Query: 447 TETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGC 506
            + G  PD  T++ +L+AC H+G+ + G  IF  M +  K+ P  EHYGC++DLL   G 
Sbjct: 431 RKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITPKLEHYGCMIDLLGHLGL 490

Query: 507 LSDASGLAGKLLEGMGPN--IWRALLSGCVLH---------------------------- 536
             +A  +   +   M P+  IW +LL  C +H                            
Sbjct: 491 FKEAEEMINTMT--MEPDGVIWCSLLKACKMHGNVELGESFAQKLIKIEPENPGSYVLLS 548

Query: 537 -----VGRFQDAEALRSGSQKKGIIKIPGIS 562
                 GR+ +   +R+    KG+ K+PG S
Sbjct: 549 NIYATAGRWNEVANIRALLNDKGMKKVPGCS 579



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 126/510 (24%), Positives = 237/510 (46%), Gaps = 66/510 (12%)

Query: 24  AENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAG 83
           A ++F+ I E N++ W+ +  G++++     ++K +  M+  GLLPNS+T   +L + A 
Sbjct: 56  AISVFETIQEPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAK 115

Query: 84  LQNLELARSIHGLMVKFGLESDL----------------------FEGLKNPYLVS---- 117
           L+  +  + IHG ++K G E DL                      F+G  +  +VS    
Sbjct: 116 LKVSKEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTAL 175

Query: 118 ---------------------------CNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNA 150
                                       NAI++G+ +    ++A+ LF     + + P+ 
Sbjct: 176 ITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDE 235

Query: 151 VTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFRE 210
            TM+TV+  C   GS  L   +H      GL  ++ + N+++D+YS   +++ A  +F+ 
Sbjct: 236 STMVTVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQG 295

Query: 211 MECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG 270
           +  KDVISW  M+G +       +AL +F+EM +S    + V +L+++   A LG +  G
Sbjct: 296 LSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFG 355

Query: 271 KQLHAQV--VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYV 328
           + +H  +   + G+ +   L  S+I MY+KCGD++++  VFN +  ++L +  A+I G+ 
Sbjct: 356 RWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFA 415

Query: 329 QNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYR 388
            +G A  A + F +MR+   +  D IT V +L+A      L++  ++    F +    Y+
Sbjct: 416 MHGRANAAFDIFSRMRKNGIEP-DDITFVGLLSACSHSGMLDLGRRI----FRSMTQNYK 470

Query: 389 SVQN-----CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALY 443
                    C+I      G    A  +   M    D V W +++    ++G+ E   +  
Sbjct: 471 ITPKLEHYGCMIDLLGHLGLFKEAEEMINTMTMEPDGVIWCSLLKACKMHGNVELGESFA 530

Query: 444 HKMTETGEVPDSSTYLSILNACGHAGLTND 473
            K+ +  E  +  +Y+ + N    AG  N+
Sbjct: 531 QKLIKI-EPENPGSYVLLSNIYATAGRWNE 559



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 100/354 (28%), Positives = 173/354 (48%), Gaps = 26/354 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D  + + L++ Y   G I+ A+ +FDEIP K+VVSW+ +I GY+  G +++++  F  MM
Sbjct: 168 DVVSYTALITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMM 227

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
            + + P+  TMV V+ A A   +++L R +H  +   GL S+                  
Sbjct: 228 KTNVKPDESTMVTVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVE 287

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               LF+GL N  ++S N ++ G+ +  L+++A+LLF     SG  PN VTML+++  C 
Sbjct: 288 TACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACA 347

Query: 162 ALGSRALCELIHGLTIKL--GLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
            LG+      IH    K   G+    S+  S++DMY+   D++AA Q+F  M  + + + 
Sbjct: 348 QLGAIDFGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSAC 407

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
             M+  F     A  A  IF  MRK+ I  D +  + L+S  +  G L  G+++   +  
Sbjct: 408 NAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQ 467

Query: 280 G-GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISGYVQNG 331
              +  +L     +I +    G    +  + N +T E   V W +++     +G
Sbjct: 468 NYKITPKLEHYGCMIDLLGHLGLFKEAEEMINTMTMEPDGVIWCSLLKACKMHG 521


>gi|359492699|ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like [Vitis vinifera]
          Length = 1545

 Score =  226 bits (575), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 171/634 (26%), Positives = 290/634 (45%), Gaps = 140/634 (22%)

Query: 3   IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
           ++P+  +KL+S Y K G + EA  +F E+ E+N+ +WS +I  YS      + ++ F  M
Sbjct: 117 MNPFVETKLVSMYAKCGSLGEARKVFGEMRERNLYAWSAMIGAYSREQMWREVVQHFFFM 176

Query: 63  MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------- 106
           M  G++P+ F +  +L A     + E  + IH L+++ G+  ++                
Sbjct: 177 MEDGIVPDEFLLPKILQACGNCGDAETGKLIHSLVIRCGMNFNIRVSNSILAVYAKCGRL 236

Query: 107 ------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                 FE +     VS N+I+ G+      +++  LF   +  G+ P  VT        
Sbjct: 237 SCARRFFENMDYRDRVSWNSIITGYCQKGELEKSHQLFEKMQEEGIEPGLVTW------- 289

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC----KDV 216
                                       N +++ YS     D A+++ ++ME      DV
Sbjct: 290 ----------------------------NILINSYSQSGKCDDAMELMKKMESFRIVPDV 321

Query: 217 ISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQ 276
            +WT M+  F        AL++FREM  + I  + V + + IS  A L  LK+G +LH+ 
Sbjct: 322 FTWTSMISGFAQNNRRSQALELFREMLLAGIEPNGVTVTSGISACASLKALKKGMELHSV 381

Query: 277 VVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK--------------------- 315
            V  G   +L + NS+I MYSK G+L+ +R VF+ I +K                     
Sbjct: 382 AVKIGCVEDLLVGNSLIDMYSKSGELEDARRVFDMILKKDVYTWNSMIGGYCQAGYCGKA 441

Query: 316 --------------SLVSWTAIISGYVQNGCAREALNQFIKMRQE---KTDSVDSITLVS 358
                         ++V+W A+ISGY+QNG   +A++ F +M ++   K D+    +L++
Sbjct: 442 YDLFIKMHESDVPPNVVTWNAMISGYIQNGDEDQAMDLFHRMEKDGLIKRDTASWNSLIA 501

Query: 359 ILTASGE-----------------------LAALEICLQL---------HGIAFEAGFPR 386
               +G                        L+ L  C  L         HG         
Sbjct: 502 GYLQNGHKNKALGIFRQMQSFCIRPNSVTMLSILPACANLVAAKKVKEIHGCILRRNLGS 561

Query: 387 YRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM 446
             SV NCLI +Y+K GN+  A  +F+ +   +D++SWN++I GY ++G  ++AL L+ +M
Sbjct: 562 ELSVANCLIDTYAKSGNIVYAQTIFQGIS-SKDIISWNSLIAGYVLHGCSDSALDLFDQM 620

Query: 447 TETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGC 506
           T+ G  P   T+LSI+ A   +G+ + G  +F+ M+E+ ++ P  EH+  ++DLL R+G 
Sbjct: 621 TKMGVKPSRGTFLSIIYAFSLSGMVDKGKQVFSSMMEDYQILPGLEHHSAMIDLLGRSGK 680

Query: 507 LSDASGLAGKLLEGMG--PN--IWRALLSGCVLH 536
           L    G A + +E M   P+  IW ALL+   +H
Sbjct: 681 L----GEAIEFIEDMAIEPDSCIWAALLTASKIH 710



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 109/455 (23%), Positives = 212/455 (46%), Gaps = 52/455 (11%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPE----KNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSG 66
           L+++Y +SGK  +A  L  ++       +V +W+ +I G++ N    ++++ F  M+L+G
Sbjct: 292 LINSYSQSGKCDDAMELMKKMESFRIVPDVFTWTSMISGFAQNNRRSQALELFREMLLAG 351

Query: 67  LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFI 126
           + PN  T+   + A A L+ L+    +H + VK G   DL  G         N+++  + 
Sbjct: 352 IEPNGVTVTSGISACASLKALKKGMELHSVAVKIGCVEDLLVG---------NSLIDMYS 402

Query: 127 NNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKL---GLIL 183
            +   + A  +F+      L  +  T  ++I G    G    C   + L IK+    +  
Sbjct: 403 KSGELEDARRVFDMI----LKKDVYTWNSMIGGYCQAG---YCGKAYDLFIKMHESDVPP 455

Query: 184 DVSVNNSVLDMYSCLMDLDAAIQIFREMEC-----KDVISWTRMMGLFVDFEYAGDALKI 238
           +V   N+++  Y    D D A+ +F  ME      +D  SW  ++  ++   +   AL I
Sbjct: 456 NVVTWNAMISGYIQNGDEDQAMDLFHRMEKDGLIKRDTASWNSLIAGYLQNGHKNKALGI 515

Query: 239 FREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSK 298
           FR+M+   I  ++V +L+++   A L   K+ K++H  ++   L SEL ++N +I  Y+K
Sbjct: 516 FRQMQSFCIRPNSVTMLSILPACANLVAAKKVKEIHGCILRRNLGSELSVANCLIDTYAK 575

Query: 299 CGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVS 358
            G++  ++++F  I+ K ++SW ++I+GYV +GC+  AL+ F           D +T + 
Sbjct: 576 SGNIVYAQTIFQGISSKDIISWNSLIAGYVLHGCSDSALDLF-----------DQMTKMG 624

Query: 359 ILTASGELAALEICLQLHGI------AFEAGFPRYRSV-----QNCLISSYSKCGNVDLA 407
           +  + G   ++     L G+       F +    Y+ +      + +I    + G +  A
Sbjct: 625 VKPSRGTFLSIIYAFSLSGMVDKGKQVFSSMMEDYQILPGLEHHSAMIDLLGRSGKLGEA 684

Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALAL 442
               E+M    D   W  ++    +  HG   LA+
Sbjct: 685 IEFIEDMAIEPDSCIWAALLTASKI--HGNIGLAI 717



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 101/382 (26%), Positives = 176/382 (46%), Gaps = 65/382 (17%)

Query: 143 GSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVS--VNNSVLDMYSCLMD 200
           GS + PN  T + +++ C+  GS  L   +H    ++GL+ +++  V   ++ MY+    
Sbjct: 80  GSNVKPN--TYMQLLQSCIDQGSAELGRKLHA---RIGLLEEMNPFVETKLVSMYAKCGS 134

Query: 201 LDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISV 260
           L  A ++F EM  +++ +W+ M+G +   +   + ++ F  M +  I+ D   L  ++  
Sbjct: 135 LGEARKVFGEMRERNLYAWSAMIGAYSREQMWREVVQHFFFMMEDGIVPDEFLLPKILQA 194

Query: 261 NAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSW 320
               GD + GK +H+ V+  G+   +R+SNSI+A+Y+KCG L  +R  F  +  +  VSW
Sbjct: 195 CGNCGDAETGKLIHSLVIRCGMNFNIRVSNSILAVYAKCGRLSCARRFFENMDYRDRVSW 254

Query: 321 TAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAF 380
            +II+GY Q G   ++   F KM++E                                  
Sbjct: 255 NSIITGYCQKGELEKSHQLFEKMQEE--------------------------------GI 282

Query: 381 EAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLR---DVVSWNTIIYGYGVNGHGE 437
           E G   +    N LI+SYS+ G  D A  + ++M   R   DV +W ++I G+  N    
Sbjct: 283 EPGLVTW----NILINSYSQSGKCDDAMELMKKMESFRIVPDVFTWTSMISGFAQNNRRS 338

Query: 438 TALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCV 497
            AL L+ +M   G  P+  T  S ++AC        G+ + +  ++           GCV
Sbjct: 339 QALELFREMLLAGIEPNGVTVTSGISACASLKALKKGMELHSVAVK----------IGCV 388

Query: 498 VDLL---------ARAGCLSDA 510
            DLL         +++G L DA
Sbjct: 389 EDLLVGNSLIDMYSKSGELEDA 410


>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 740

 Score =  226 bits (575), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 166/563 (29%), Positives = 270/563 (47%), Gaps = 96/563 (17%)

Query: 24  AENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAG 83
           A  +FD IP+ N+ SW+ ++  YS +G          H+                     
Sbjct: 57  ARRVFDGIPQPNLFSWNNLLLAYSKSG----------HLS-------------------- 86

Query: 84  LQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFN-FFR 142
               E+ R+              FE L +   V+ N ++ G+  + L   AV  +N   +
Sbjct: 87  ----EMERT--------------FEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMK 128

Query: 143 GSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYS---CLM 199
                   VT++T+++   + G  +L + IHG  IKLG    + V + +LDMYS   C+ 
Sbjct: 129 DFSSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCIS 188

Query: 200 D----------------------------LDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
           D                            ++ A+Q+FR ME KD +SW+ M+        
Sbjct: 189 DAKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGME-KDSVSWSAMIKGLAQNGM 247

Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
             +A++ FREM+   +  D     +++     LG +  G+Q+HA ++   LQ  + + ++
Sbjct: 248 EKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSA 307

Query: 292 IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
           +I MY KC  L  +++VF+++ +K++VSWTA++ GY Q G A EA+  F+ M++   D  
Sbjct: 308 LIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDP- 366

Query: 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVF 411
           D  TL   ++A   +++LE   Q HG A  AG   Y +V N L++ Y KCG++D +  +F
Sbjct: 367 DHYTLGQAISACANISSLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLF 426

Query: 412 EEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLT 471
            EM  +RD VSW  ++  Y   G    A+ L+ KM + G  PD  T   +++AC  AGL 
Sbjct: 427 NEMN-VRDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISACSRAGLV 485

Query: 472 NDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMG--PNI--WR 527
             G   F  MI E  + PS  HY C++DL +R+G + +A G     + GM   P+   W 
Sbjct: 486 EKGQRYFELMINEYGIVPSNGHYSCMIDLFSRSGRIEEAMG----FINGMPFRPDAIGWT 541

Query: 528 ALLSGCV----LHVGRFQDAEAL 546
            LLS C     L +G++  AE+L
Sbjct: 542 TLLSACRNKGNLEIGKWA-AESL 563



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 133/483 (27%), Positives = 228/483 (47%), Gaps = 59/483 (12%)

Query: 1   PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
           P  + ++ + LL  Y KSG + E E  F+++P+++ V+W+++I GYS++G    ++KA++
Sbjct: 65  PQPNLFSWNNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYN 124

Query: 61  HMM--LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES-------------- 104
            MM   S  L    T++ +L  ++   ++ L + IHG ++K G ES              
Sbjct: 125 TMMKDFSSNL-TRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSK 183

Query: 105 ---------------------------------------DLFEGLKNPYLVSCNAIVAGF 125
                                                   LF G++    VS +A++ G 
Sbjct: 184 VGCISDAKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGMEKDS-VSWSAMIKGL 242

Query: 126 INNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDV 185
             N + ++A+  F   +  GL  +     +V+  C  LG+      IH   I+  L   +
Sbjct: 243 AQNGMEKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHI 302

Query: 186 SVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKS 245
            V ++++DMY     L  A  +F  M+ K+V+SWT M+  +     AG+A+KIF +M++S
Sbjct: 303 YVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRS 362

Query: 246 RIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSS 305
            I  D   L   IS  A +  L+ G Q H + +  GL   + +SNS++ +Y KCGD+D S
Sbjct: 363 GIDPDHYTLGQAISACANISSLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDS 422

Query: 306 RSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGE 365
             +FN++  +  VSWTA++S Y Q G A EA+  F KM Q      D +TL  +++A   
Sbjct: 423 TRLFNEMNVRDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKP-DGVTLTGVISACSR 481

Query: 366 LAALEICLQLHGIAF-EAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWN 424
              +E   +   +   E G        +C+I  +S+ G ++ A      M F  D + W 
Sbjct: 482 AGLVEKGQRYFELMINEYGIVPSNGHYSCMIDLFSRSGRIEEAMGFINGMPFRPDAIGWT 541

Query: 425 TII 427
           T++
Sbjct: 542 TLL 544


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  226 bits (575), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 141/527 (26%), Positives = 261/527 (49%), Gaps = 72/527 (13%)

Query: 104 SDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
           + +FE ++ P  +  N ++ G   +     ++ L+      GL+PN+ T   +++ C   
Sbjct: 18  TSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKSCAKS 77

Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMY------------------------SCLM 199
            +    + IHG  +KLG  LD+ V+ S++ MY                        + L+
Sbjct: 78  KTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTALI 137

Query: 200 -------DLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTV 252
                  D+ +A ++F E+  KDV+SW  M+  + +     +AL++F EM K  +  D  
Sbjct: 138 TGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDES 197

Query: 253 ALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQI 312
             + ++S  A  G ++ G+Q+H+ V   G  S L++ N++I +YSKCG+++++  +F  +
Sbjct: 198 TYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQGL 257

Query: 313 TEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEIC 372
           + K ++SW  +I GY      +EAL  F +M +   ++ + +T++S+L A   L A++I 
Sbjct: 258 SYKDVISWNTLIGGYTHMNLYKEALLLFQEMLR-SGETPNDVTMLSVLPACAHLGAIDIG 316

Query: 373 LQLHGIAFE--AGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGY 430
             +H    +   G     S++  LI  Y+KCG+++ A+ VF  M   + + SWN +I+G+
Sbjct: 317 RWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSM-LHKSLSSWNAMIFGF 375

Query: 431 GVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPS 490
            ++G  + +  L+ +M + G  PD  T++ +L+AC H+G+ + G  IF  M ++ K+ P 
Sbjct: 376 AMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPK 435

Query: 491 QEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN--IWRALLSGCVLH------------ 536
            EHYGC++DLL  +G   +A  +   +   M P+  IW +LL  C +H            
Sbjct: 436 LEHYGCMIDLLGHSGLFKEAEEMINTM--EMEPDGVIWCSLLKACKMHGNVELAESFAQN 493

Query: 537 ---------------------VGRFQDAEALRSGSQKKGIIKIPGIS 562
                                 GR++D   +R+    K + K+PG S
Sbjct: 494 LIKIEPENPSSYILLSNIYASAGRWEDVARIRALLNGKCMKKVPGCS 540



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 126/510 (24%), Positives = 231/510 (45%), Gaps = 66/510 (12%)

Query: 24  AENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAG 83
           A ++F+ I E N + W+ +I G++++     S+  +  M+  GLLPNS+T   +L + A 
Sbjct: 17  ATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKSCAK 76

Query: 84  LQNLELARSIHGLMVKFGLESDLF------------EGLKNPYLV--------------- 116
            +     + IHG ++K G + DL+              L++ Y V               
Sbjct: 77  SKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTAL 136

Query: 117 --------------------------SCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNA 150
                                     S NA+++G+     +++A+ LF       + P+ 
Sbjct: 137 ITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDE 196

Query: 151 VTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFRE 210
            T +TV+  C   GS  L   +H      G   ++ + N+++D+YS   +++ A  +F+ 
Sbjct: 197 STYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQG 256

Query: 211 MECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG 270
           +  KDVISW  ++G +       +AL +F+EM +S    + V +L+++   A LG +  G
Sbjct: 257 LSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIG 316

Query: 271 KQLHAQV--VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYV 328
           + +H  +   L G+ +   L  S+I MY+KCGD++++  VFN +  KSL SW A+I G+ 
Sbjct: 317 RWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFA 376

Query: 329 QNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYR 388
            +G A  + + F +MR+   +  D IT V +L+A      L++   +    F +    Y+
Sbjct: 377 MHGRADASFDLFSRMRKIGIEP-DDITFVGLLSACSHSGMLDLGRHI----FRSMTQDYK 431

Query: 389 SVQN-----CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALY 443
                    C+I      G    A  +   M    D V W +++    ++G+ E A +  
Sbjct: 432 MTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELAESFA 491

Query: 444 HKMTETGEVPDSSTYLSILNACGHAGLTND 473
             + +  E  + S+Y+ + N    AG   D
Sbjct: 492 QNLIKI-EPENPSSYILLSNIYASAGRWED 520



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 110/390 (28%), Positives = 183/390 (46%), Gaps = 31/390 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D  + + L++ Y   G I+ A+ LFDEIP K+VVSW+ +I GY+  G ++++++ F  MM
Sbjct: 129 DVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMM 188

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
              + P+  T V VL A A   ++EL R +H  +   G +S+                  
Sbjct: 189 KMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVE 248

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               LF+GL    ++S N ++ G+ +  L+++A+LLF     SG  PN VTML+V+  C 
Sbjct: 249 TACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACA 308

Query: 162 ALGSRALCELIHGLTIKL--GLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
            LG+  +   IH    K   G+    S+  S++DMY+   D++AA Q+F  M  K + SW
Sbjct: 309 HLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSW 368

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
             M+  F     A  +  +F  MRK  I  D +  + L+S  +  G L  G+ +   +  
Sbjct: 369 NAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQ 428

Query: 280 G-GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISGYVQNG---CAR 334
              +  +L     +I +    G    +  + N +  E   V W +++     +G    A 
Sbjct: 429 DYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELAE 488

Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASG 364
                 IK+  E   S   I L +I  ++G
Sbjct: 489 SFAQNLIKIEPENPSSY--ILLSNIYASAG 516



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 124/292 (42%), Gaps = 45/292 (15%)

Query: 302 LDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILT 361
           L  + SVF  I E + + W  +I G+  +     +L  ++ M        +S T   +L 
Sbjct: 14  LPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLP-NSYTFPFLLK 72

Query: 362 ASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEE-------- 413
           +  +        Q+HG   + GF     V   LIS Y +   ++ AY VF+         
Sbjct: 73  SCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVS 132

Query: 414 -----MGF-----------------LRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE 451
                 G+                 ++DVVSWN +I GY   G  + AL L+ +M +   
Sbjct: 133 YTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNV 192

Query: 452 VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDAS 511
            PD STY+++L+AC H+G    G  + +  ++++    + +    ++DL ++ G +  A 
Sbjct: 193 RPDESTYVTVLSACAHSGSIELGRQV-HSWVDDHGFDSNLKIVNALIDLYSKCGEVETAC 251

Query: 512 GLAGKLLEGMGPN---IWRALLSGCVLHVGRFQDA-----EALRSGSQKKGI 555
           G    L +G+       W  L+ G   H+  +++A     E LRSG     +
Sbjct: 252 G----LFQGLSYKDVISWNTLIGG-YTHMNLYKEALLLFQEMLRSGETPNDV 298


>gi|302806575|ref|XP_002985037.1| hypothetical protein SELMODRAFT_121365 [Selaginella moellendorffii]
 gi|300147247|gb|EFJ13912.1| hypothetical protein SELMODRAFT_121365 [Selaginella moellendorffii]
          Length = 763

 Score =  225 bits (574), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 154/563 (27%), Positives = 271/563 (48%), Gaps = 39/563 (6%)

Query: 5   PYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML 64
           P+ ++ L+  Y K G + +A+ +FD    ++ V+W+ ++ GY+ NG  E+++  F+ M  
Sbjct: 169 PFVANTLIDMYSKCGSLLDAKKVFDSTQARDAVAWTAMMLGYAENGEAERALHLFACMEQ 228

Query: 65  SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL------------------ 106
            G + N      +L      + LE    IH  ++    + D                   
Sbjct: 229 QGCMYNREAYTSLLRECISGRALERGARIHARLIAIEKDKDTAIGNLLVQMYAKCGDLHR 288

Query: 107 ----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNF--FRGSGLVPNAVTMLTVIRGC 160
               F  ++    VS   ++A +I++   +Q + LF+     G+    +A T+  V+  C
Sbjct: 289 ARKAFYSIERRNSVSWTVMLAAYIDHGKQEQGLCLFHTMDLEGAQADMDAFTLSCVLSAC 348

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
            +LG+ A  + IH   +  G  LD+ + N+++ MY+    L+ A ++F  ++ K  +SWT
Sbjct: 349 SSLGAGAEGQAIHARLVACGYELDIPLQNALVTMYAKCHCLEEARRVFDNIQDKSRVSWT 408

Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG----KQLHAQ 276
            ++  +V  E   ++LK+F  M    +  D + L  L +    L D  RG    + +H +
Sbjct: 409 SIISAYVQHERGDESLKMFLAMNLDGMQPDEMTLSALCAACCQLEDRGRGLAVGRGVHTR 468

Query: 277 VVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
           + + G      +  +++ MY++CG L  + +VFN++T K +VSW A+++  V+ G A EA
Sbjct: 469 IRVAGHDQNPVVGTALVCMYARCGCLLEAAAVFNKLTPKDVVSWNAMLTATVEAGEAEEA 528

Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
           L    +MR E     D+ T   ++ A   L        +H      G   +      L+ 
Sbjct: 529 LRLHQRMRAEGV-MPDAATFAVVVAACSALKDEATSRAVHTEVAARGLDGHPVSGTALVC 587

Query: 397 SYSKCGNVDLAYIVFEEMGF--LRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
            Y+KCG +D A  VFE M    +  V +WN+I+     +GHG TA+  +  MT     PD
Sbjct: 588 MYAKCGRLDDATTVFERMQRHSVLAVAAWNSILAALAKHGHGATAVEFFRVMTMAYVQPD 647

Query: 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLA 514
             T   +L+AC H+GL   GL  F  M+ +  + P+ EHY C++DLL RAG  ++A    
Sbjct: 648 GITITVMLHACSHSGLLATGLDYFLSMLHDFGLAPAAEHYACLIDLLGRAGVGAEAE--- 704

Query: 515 GKLLEGM--GPN--IWRALLSGC 533
            +++ GM   P+   W+ LL+ C
Sbjct: 705 -EVIRGMPFAPDNVAWKTLLASC 726



 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 137/491 (27%), Positives = 239/491 (48%), Gaps = 31/491 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D Y  + L++ Y K G + EA   F+++  ++ VSW+ +I  Y+ NG   ++++ FS M 
Sbjct: 66  DSYALNSLVNMYAKCGSLVEARAEFEKLQRRDAVSWTTLILAYTENGRGGEALELFSRMA 125

Query: 64  LSGLLPNSFTMVGVLVAAAG-LQNLELARSIHGLMVKFGLES------------------ 104
             G LP+  T +  LVA A  L+ LE    +H      G +S                  
Sbjct: 126 DEGCLPDGRTYLAALVACASLLRCLERGMDVHSQSRTSGCDSVPFVANTLIDMYSKCGSL 185

Query: 105 ----DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
                +F+  +    V+  A++ G+  N   ++A+ LF      G + N     +++R C
Sbjct: 186 LDAKKVFDSTQARDAVAWTAMMLGYAENGEAERALHLFACMEQQGCMYNREAYTSLLREC 245

Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
           ++  +      IH   I +    D ++ N ++ MY+   DL  A + F  +E ++ +SWT
Sbjct: 246 ISGRALERGARIHARLIAIEKDKDTAIGNLLVQMYAKCGDLHRARKAFYSIERRNSVSWT 305

Query: 221 RMMGLFVDFEYAGDALKIFREM--RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
            M+  ++D       L +F  M    ++   D   L  ++S  + LG    G+ +HA++V
Sbjct: 306 VMLAAYIDHGKQEQGLCLFHTMDLEGAQADMDAFTLSCVLSACSSLGAGAEGQAIHARLV 365

Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
             G + ++ L N+++ MY+KC  L+ +R VF+ I +KS VSWT+IIS YVQ+    E+L 
Sbjct: 366 ACGYELDIPLQNALVTMYAKCHCLEEARRVFDNIQDKSRVSWTSIISAYVQHERGDESLK 425

Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELA----ALEICLQLHGIAFEAGFPRYRSVQNCL 394
            F+ M  +     D +TL ++  A  +L      L +   +H     AG  +   V   L
Sbjct: 426 MFLAMNLDGMQP-DEMTLSALCAACCQLEDRGRGLAVGRGVHTRIRVAGHDQNPVVGTAL 484

Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
           +  Y++CG +  A  VF ++   +DVVSWN ++      G  E AL L+ +M   G +PD
Sbjct: 485 VCMYARCGCLLEAAAVFNKL-TPKDVVSWNAMLTATVEAGEAEEALRLHQRMRAEGVMPD 543

Query: 455 SSTYLSILNAC 465
           ++T+  ++ AC
Sbjct: 544 AATFAVVVAAC 554



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 147/297 (49%), Gaps = 5/297 (1%)

Query: 189 NSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRII 248
           NS+++MY+    L  A   F +++ +D +SWT ++  + +    G+AL++F  M     +
Sbjct: 71  NSLVNMYAKCGSLVEARAEFEKLQRRDAVSWTTLILAYTENGRGGEALELFSRMADEGCL 130

Query: 249 CD-TVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRS 307
            D    L  L++  ++L  L+RG  +H+Q    G  S   ++N++I MYSKCG L  ++ 
Sbjct: 131 PDGRTYLAALVACASLLRCLERGMDVHSQSRTSGCDSVPFVANTLIDMYSKCGSLLDAKK 190

Query: 308 VFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELA 367
           VF+    +  V+WTA++ GY +NG A  AL+ F  M Q+     +     S+L       
Sbjct: 191 VFDSTQARDAVAWTAMMLGYAENGEAERALHLFACMEQQGC-MYNREAYTSLLRECISGR 249

Query: 368 ALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
           ALE   ++H         +  ++ N L+  Y+KCG++  A   F  +   R+ VSW  ++
Sbjct: 250 ALERGARIHARLIAIEKDKDTAIGNLLVQMYAKCGDLHRARKAFYSIE-RRNSVSWTVML 308

Query: 428 YGYGVNGHGETALALYHKMTETGEVPDSSTYL--SILNACGHAGLTNDGLVIFNQMI 482
             Y  +G  E  L L+H M   G   D   +    +L+AC   G   +G  I  +++
Sbjct: 309 AAYIDHGKQEQGLCLFHTMDLEGAQADMDAFTLSCVLSACSSLGAGAEGQAIHARLV 365



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 115/264 (43%), Gaps = 38/264 (14%)

Query: 264 LGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSL------ 317
           +  L +   LHA  V  G +S+  ++N++I ++S+CG L ++R+VF+++  + +      
Sbjct: 8   VASLDKCCALHAGAVEIGAESDTFVANTVIDVFSRCGSLVNARNVFDRMVRRDVVSWNDS 67

Query: 318 -------------------------------VSWTAIISGYVQNGCAREALNQFIKMRQE 346
                                          VSWT +I  Y +NG   EAL  F +M  E
Sbjct: 68  YALNSLVNMYAKCGSLVEARAEFEKLQRRDAVSWTTLILAYTENGRGGEALELFSRMADE 127

Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
                    L +++  +  L  LE  + +H  +  +G      V N LI  YSKCG++  
Sbjct: 128 GCLPDGRTYLAALVACASLLRCLERGMDVHSQSRTSGCDSVPFVANTLIDMYSKCGSLLD 187

Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
           A  VF+     RD V+W  ++ GY  NG  E AL L+  M + G + +   Y S+L  C 
Sbjct: 188 AKKVFDSTQ-ARDAVAWTAMMLGYAENGEAERALHLFACMEQQGCMYNREAYTSLLRECI 246

Query: 467 HAGLTNDGLVIFNQMIEENKVKPS 490
                  G  I  ++I   K K +
Sbjct: 247 SGRALERGARIHARLIAIEKDKDT 270



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 60/138 (43%), Gaps = 36/138 (26%)

Query: 365 ELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM---------- 414
           ++A+L+ C  LH  A E G      V N +I  +S+CG++  A  VF+ M          
Sbjct: 7   KVASLDKCCALHAGAVEIGAESDTFVANTVIDVFSRCGSLVNARNVFDRMVRRDVVSWND 66

Query: 415 --------------GFL------------RDVVSWNTIIYGYGVNGHGETALALYHKMTE 448
                         G L            RD VSW T+I  Y  NG G  AL L+ +M +
Sbjct: 67  SYALNSLVNMYAKCGSLVEARAEFEKLQRRDAVSWTTLILAYTENGRGGEALELFSRMAD 126

Query: 449 TGEVPDSSTYLSILNACG 466
            G +PD  TYL+ L AC 
Sbjct: 127 EGCLPDGRTYLAALVACA 144



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/254 (20%), Positives = 112/254 (44%), Gaps = 39/254 (15%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           +P   + L+  Y + G + EA  +F+++  K+VVSW+ ++      G  E++++    M 
Sbjct: 477 NPVVGTALVCMYARCGCLLEAAAVFNKLTPKDVVSWNAMLTATVEAGEAEEALRLHQRMR 536

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE-------------------- 103
             G++P++ T   V+ A + L++   +R++H  +   GL+                    
Sbjct: 537 AEGVMPDAATFAVVVAACSALKDEATSRAVHTEVAARGLDGHPVSGTALVCMYAKCGRLD 596

Query: 104 --SDLFEGLKNPYLVSC---NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
             + +FE ++   +++    N+I+A    +     AV  F     + + P+ +T+  ++ 
Sbjct: 597 DATTVFERMQRHSVLAVAAWNSILAALAKHGHGATAVEFFRVMTMAYVQPDGITITVMLH 656

Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDL-------DAAIQIFREM 211
            C   G      L  GL   L ++ D  +  +  + Y+CL+DL         A ++ R M
Sbjct: 657 ACSHSGL-----LATGLDYFLSMLHDFGLAPAA-EHYACLIDLLGRAGVGAEAEEVIRGM 710

Query: 212 E-CKDVISWTRMMG 224
               D ++W  ++ 
Sbjct: 711 PFAPDNVAWKTLLA 724


>gi|326526571|dbj|BAJ97302.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 851

 Score =  225 bits (574), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 163/566 (28%), Positives = 283/566 (50%), Gaps = 39/566 (6%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPE--KNVVSWSIVIHGYSINGFHEKSMKAFSH 61
           DP+  + L+S Y + G++++AE +F  IP+  +N+VSW+ ++   +++G   + ++ F  
Sbjct: 102 DPFVGNSLVSMYGRCGRVEDAEKVFGGIPDAARNIVSWNALM--AALSGDPRRGLELFRD 159

Query: 62  MMLS-GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES---------DLFEGL- 110
            +++ G + +  T+V VL   A L   E  R++HGL  K G ++         D++    
Sbjct: 160 CLVAVGGMVDEATLVTVLPMCAALGWSETGRAVHGLAAKSGWDAPARVGNALVDMYAKCG 219

Query: 111 ----------KNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRG-----SGLVP-NAVTML 154
                     + P +VS N ++  +  N+   +A   F   R       G VP + +T+L
Sbjct: 220 ELADAERAFPEAPSVVSWNVMLGAYTRNR---EAGAAFGLLRDMQIKEHGSVPADEITVL 276

Query: 155 TVIRGCVALGSRALCELIHGLTIKLGL-ILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC 213
           +V+  C      +    +H  T++ GL      V N+++  Y     L  A ++F ++  
Sbjct: 277 SVLPACSGPTELSRLRELHAFTVRRGLDAASDKVPNALVAAYGRCGRLLHADRVFTDIRR 336

Query: 214 KDVISWTRMMGLFVDFEYAGDALKIFREMRKS-RIICDTVALLNLISVNAILGDLKRGKQ 272
           K V SW  ++        A  A+++F +M  +  +  D  ++ +L+   A    L   K 
Sbjct: 337 KTVSSWNTLISAHAQQNTAA-AIELFIQMTNACGLKPDGFSIGSLLMACADPKHLLHVKA 395

Query: 273 LHAQVVLGGLQSELRLSNSIIAMYSKCGDLDS-SRSVFNQITEKSLVSWTAIISGYVQNG 331
            H  ++  GL+ +  +  S+++ Y +C   +  +R +F+ + EK  V W A+ISGY QNG
Sbjct: 396 THGFILRNGLERDTVIRASLLSAYIRCSRTEYLARVLFDAMEEKGEVLWIAMISGYSQNG 455

Query: 332 CAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ 391
              E+L  F +M+  +      I+  S L A  EL+++ +  ++H  A +A       + 
Sbjct: 456 LPGESLQLFREMQSVEGHCSSVISATSALMACSELSSVRLGKEMHCFALKADLCDDPFLS 515

Query: 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE 451
           + LI  YSKCG V+ A   F+ +      VSW  +I GY VNG G  A+ LY KM   G 
Sbjct: 516 SSLIDMYSKCGFVEDARTFFDRLKARDAKVSWTAMITGYAVNGLGREAVELYGKMRREGM 575

Query: 452 VPDSSTYLSILNACGHAGLTNDGLVIFNQMI-EENKVKPSQEHYGCVVDLLARAGCLSDA 510
            PD  TYL +L ACGHAG+  +GL  F++M    +K++   EHY CV+ +L+RAG  +DA
Sbjct: 576 EPDEFTYLGLLMACGHAGMLEEGLRFFDEMRNHHHKIEVKLEHYSCVIGMLSRAGRFADA 635

Query: 511 SGLAGKLLEGMGPNIWRALLSGCVLH 536
             L  ++ +     I  ++LS C +H
Sbjct: 636 VALMAEMPQEPDAKILSSVLSACHIH 661



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 127/473 (26%), Positives = 210/473 (44%), Gaps = 63/473 (13%)

Query: 39  WSIVIHGYSINGFHEKSMKAFSHMML--SGLLPNSFTM---------VGVLVAAAGLQNL 87
           W+ ++  +S  G H  ++     ++    G+ P+ FT+         + V  AAAG    
Sbjct: 32  WNALLADHSRAGRHADALALLPPLLAASEGIAPDRFTLPPAARSCGFLRVGAAAAG---- 87

Query: 88  ELARSIHGLMVKFGLESDLFEG--LKNPY----------------------LVSCNAIVA 123
              R +H L  K GL  D F G  L + Y                      +VS NA++A
Sbjct: 88  ---RQVHALAAKLGLPGDPFVGNSLVSMYGRCGRVEDAEKVFGGIPDAARNIVSWNALMA 144

Query: 124 GFINN-----KLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIK 178
               +     +LF+  ++        G+V  A T++TV+  C ALG       +HGL  K
Sbjct: 145 ALSGDPRRGLELFRDCLVAVG-----GMVDEA-TLVTVLPMCAALGWSETGRAVHGLAAK 198

Query: 179 LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKI 238
            G      V N+++DMY+   +L  A + F   E   V+SW  M+G +     AG A  +
Sbjct: 199 SGWDAPARVGNALVDMYAKCGELADAERAF--PEAPSVVSWNVMLGAYTRNREAGAAFGL 256

Query: 239 FREMR---KSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL-RLSNSIIA 294
            R+M+      +  D + +L+++   +   +L R ++LHA  V  GL +   ++ N+++A
Sbjct: 257 LRDMQIKEHGSVPADEITVLSVLPACSGPTELSRLRELHAFTVRRGLDAASDKVPNALVA 316

Query: 295 MYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSI 354
            Y +CG L  +  VF  I  K++ SW  +IS + Q   A  A+  FI+M        D  
Sbjct: 317 AYGRCGRLLHADRVFTDIRRKTVSSWNTLISAHAQQNTA-AAIELFIQMTNACGLKPDGF 375

Query: 355 TLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD-LAYIVFEE 413
           ++ S+L A  +   L      HG     G  R   ++  L+S+Y +C   + LA ++F+ 
Sbjct: 376 SIGSLLMACADPKHLLHVKATHGFILRNGLERDTVIRASLLSAYIRCSRTEYLARVLFDA 435

Query: 414 MGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET-GEVPDSSTYLSILNAC 465
           M    +V+ W  +I GY  NG    +L L+ +M    G      +  S L AC
Sbjct: 436 MEEKGEVL-WIAMISGYSQNGLPGESLQLFREMQSVEGHCSSVISATSALMAC 487



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 109/409 (26%), Positives = 192/409 (46%), Gaps = 40/409 (9%)

Query: 145 GLVPNAVTMLTVIRGC--VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLD 202
           G+ P+  T+    R C  + +G+ A    +H L  KLGL  D  V NS++ MY     ++
Sbjct: 61  GIAPDRFTLPPAARSCGFLRVGAAAAGRQVHALAAKLGLPGDPFVGNSLVSMYGRCGRVE 120

Query: 203 AAIQIFREME--CKDVISWTRMMGLFVDFEYAGDALKIFRE-MRKSRIICDTVALLNLIS 259
            A ++F  +    ++++SW  +M         G  L++FR+ +     + D   L+ ++ 
Sbjct: 121 DAEKVFGGIPDAARNIVSWNALMAALSGDPRRG--LELFRDCLVAVGGMVDEATLVTVLP 178

Query: 260 VNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVS 319
           + A LG  + G+ +H      G  +  R+ N+++ MY+KCG+L  +   F +    S+VS
Sbjct: 179 MCAALGWSETGRAVHGLAAKSGWDAPARVGNALVDMYAKCGELADAERAFPEAP--SVVS 236

Query: 320 WTAIISGYVQNGCAREALNQF-----IKMRQEKTDSVDSITLVSILTASGELAALEICLQ 374
           W  ++  Y +N   REA   F     +++++  +   D IT++S+L A      L    +
Sbjct: 237 WNVMLGAYTRN---REAGAAFGLLRDMQIKEHGSVPADEITVLSVLPACSGPTELSRLRE 293

Query: 375 LHGIAFEAGFPRYR-SVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVN 433
           LH      G       V N L+++Y +CG +  A  VF ++   + V SWNT+I  +   
Sbjct: 294 LHAFTVRRGLDAASDKVPNALVAAYGRCGRLLHADRVFTDI-RRKTVSSWNTLISAH-AQ 351

Query: 434 GHGETALALYHKMTET-GEVPDSSTYLSILNACG------HAGLTNDGLVIFNQMIEENK 486
            +   A+ L+ +MT   G  PD  +  S+L AC       H   T+ G ++ N +  +  
Sbjct: 352 QNTAAAIELFIQMTNACGLKPDGFSIGSLLMACADPKHLLHVKATH-GFILRNGLERDTV 410

Query: 487 VKPS--QEHYGCV-VDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSG 532
           ++ S    +  C   + LAR   L DA       +E  G  +W A++SG
Sbjct: 411 IRASLLSAYIRCSRTEYLARV--LFDA-------MEEKGEVLWIAMISG 450



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 1/88 (1%)

Query: 2   CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNV-VSWSIVIHGYSINGFHEKSMKAFS 60
           C DP+ SS L+  Y K G +++A   FD +  ++  VSW+ +I GY++NG   ++++ + 
Sbjct: 509 CDDPFLSSSLIDMYSKCGFVEDARTFFDRLKARDAKVSWTAMITGYAVNGLGREAVELYG 568

Query: 61  HMMLSGLLPNSFTMVGVLVAAAGLQNLE 88
            M   G+ P+ FT +G+L+A      LE
Sbjct: 569 KMRREGMEPDEFTYLGLLMACGHAGMLE 596


>gi|147770185|emb|CAN69881.1| hypothetical protein VITISV_024112 [Vitis vinifera]
          Length = 734

 Score =  225 bits (574), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 145/523 (27%), Positives = 258/523 (49%), Gaps = 17/523 (3%)

Query: 17  KSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVG 76
           K GK+KEA +   E+ + +V   S+  H Y      E   K  S  +  G L +      
Sbjct: 64  KQGKLKEAHDFLKEMDDADV---SVTPHSYQC--LFEACGKLRS--LADGRLIHDRLRRT 116

Query: 77  VLVAAAGLQNLELARSIHGLMVKFGLESDL---FEGLKNPYLVSCNAIVAGFINNKLFQQ 133
           V   +  ++N  L      +    G   D+   F+ +    LVS   +++ +  N   ++
Sbjct: 117 VKNPSGSIENCLLR-----MYCDCGSXIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEK 171

Query: 134 AVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLD 193
           A+ LF+  + SG+ PN+   +++++ C+      L + +H   I+  L  +++V  ++ +
Sbjct: 172 AIRLFSDMQASGIRPNSAVYMSLLQSCLGPSFLELGKQMHSHVIRAQLNANITVETAICN 231

Query: 194 MYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVA 253
           MY     L+ A  +F  M+ ++ ++WT +M  +   +    AL++F  M    +  D   
Sbjct: 232 MYVRCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFV 291

Query: 254 LLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT 313
              ++ V   L D   GKQ+H+ +V  G +SE+ +   ++  Y KCGD++S+   F +I+
Sbjct: 292 FSIVLKVCCXLEDWDMGKQIHSHIVKLGXESEVSVGTPLVDFYVKCGDIESAYRSFGRIS 351

Query: 314 EKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICL 373
           E + VSW+A+ISG+ Q+G   + +  F  +R E    ++S    S+  A    A L +  
Sbjct: 352 EPNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGV-VLNSFIYTSVFQACAAQANLNMGS 410

Query: 374 QLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVN 433
           Q HG A + G   Y   ++ +++ YSKCG +D A   FE +    D V+W  II GY  +
Sbjct: 411 QAHGDAIKRGLVSYLYGESAMVTMYSKCGRLDYARRAFESID-EPDAVAWTAIISGYAYH 469

Query: 434 GHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEH 493
           G+   AL  + +M   G  P++ T++++L AC H+GL  +       M  +  VKP+ +H
Sbjct: 470 GNAAEALGFFRRMQSYGVRPNAVTFIAVLTACSHSGLVAEAKQYLGSMSRDYGVKPTIDH 529

Query: 494 YGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
           Y C++D  +RAG L +A  L  ++        W++LL GC  H
Sbjct: 530 YDCMIDTYSRAGLLXEALELINRMPFEPDAMSWKSLLGGCWAH 572



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 125/442 (28%), Positives = 212/442 (47%), Gaps = 24/442 (5%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           LL  Y   G   + + +FDE+  KN+VSW IVI  Y+ NG  EK+++ FS M  SG+ PN
Sbjct: 128 LLRMYCDCGSXIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASGIRPN 187

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------------FE 108
           S   + +L +  G   LEL + +H  +++  L +++                      F+
Sbjct: 188 SAVYMSLLQSCLGPSFLELGKQMHSHVIRAQLNANITVETAICNMYVRCGWLEGAKLVFD 247

Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
           G+     V+   ++ G+   K  + A+ LF      G+  +      V++ C  L    +
Sbjct: 248 GMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCXLEDWDM 307

Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
            + IH   +KLG   +VSV   ++D Y    D+++A + F  +   + +SW+ ++  F  
Sbjct: 308 GKQIHSHIVKLGXESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALISGFSQ 367

Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
                D +KIF  +R   ++ ++    ++    A   +L  G Q H   +  GL S L  
Sbjct: 368 SGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIKRGLVSYLYG 427

Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
            ++++ MYSKCG LD +R  F  I E   V+WTAIISGY  +G A EAL  F +M Q   
Sbjct: 428 ESAMVTMYSKCGRLDYARRAFESIDEPDAVAWTAIISGYAYHGNAAEALGFFRRM-QSYG 486

Query: 349 DSVDSITLVSILTASGELAALEICLQLHG-IAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
              +++T +++LTA      +    Q  G ++ + G        +C+I +YS+ G +  A
Sbjct: 487 VRPNAVTFIAVLTACSHSGLVAEAKQYLGSMSRDYGVKPTIDHYDCMIDTYSRAGLLXEA 546

Query: 408 YIVFEEMGFLRDVVSWNTIIYG 429
             +   M F  D +SW +++ G
Sbjct: 547 LELINRMPFEPDAMSWKSLLGG 568



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 145/328 (44%), Gaps = 15/328 (4%)

Query: 234 DALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSII 293
           +A    +EM  + +     +   L      L  L  G+ +H ++          + N ++
Sbjct: 70  EAHDFLKEMDDADVSVTPHSYQCLFEACGKLRSLADGRLIHDRLRRTVKNPSGSIENCLL 129

Query: 294 AMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDS 353
            MY  CG     + VF+++  K+LVSW  +IS Y +NG   +A+  F  M Q      +S
Sbjct: 130 RMYCDCGSXIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDM-QASGIRPNS 188

Query: 354 ITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEE 413
              +S+L +    + LE+  Q+H     A      +V+  + + Y +CG ++ A +VF+ 
Sbjct: 189 AVYMSLLQSCLGPSFLELGKQMHSHVIRAQLNANITVETAICNMYVRCGWLEGAKLVFDG 248

Query: 414 MGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTND 473
           M   ++ V+W  ++ GY      E AL L+ +M   G   D   +  +L  C      + 
Sbjct: 249 MD-AQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCXLEDWDM 307

Query: 474 GLVIFNQMIE---ENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN--IWRA 528
           G  I + +++   E++V         +VD   + G +  A    G++ E   PN   W A
Sbjct: 308 GKQIHSHIVKLGXESEVSVGTP----LVDFYVKCGDIESAYRSFGRISE---PNDVSWSA 360

Query: 529 LLSGCVLHVGRFQDAEALRSGSQKKGII 556
           L+SG     GR +D   + +  + +G++
Sbjct: 361 LISG-FSQSGRLEDCIKIFTSLRSEGVV 387



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 76/158 (48%), Gaps = 13/158 (8%)

Query: 6   YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
           Y  S +++ Y K G++  A   F+ I E + V+W+ +I GY+ +G   +++  F  M   
Sbjct: 426 YGESAMVTMYSKCGRLDYARRAFESIDEPDAVAWTAIISGYAYHGNAAEALGFFRRMQSY 485

Query: 66  GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK-FGLESDLFEGLKNPYLVSCNAIVAG 124
           G+ PN+ T + VL A +    +  A+   G M + +G++         P +   + ++  
Sbjct: 486 GVRPNAVTFIAVLTACSHSGLVAEAKQYLGSMSRDYGVK---------PTIDHYDCMIDT 536

Query: 125 FINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA 162
           +    L  +A+ L N        P+A++  +++ GC A
Sbjct: 537 YSRAGLLXEALELINRM---PFEPDAMSWKSLLGGCWA 571


>gi|347954544|gb|AEP33772.1| organelle transcript processing 82, partial [Draba nemorosa]
          Length = 526

 Score =  225 bits (574), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 148/514 (28%), Positives = 260/514 (50%), Gaps = 56/514 (10%)

Query: 70  NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAG---FI 126
           +S  M+   +   GL N   A S    +++F + S  F+GL  PY +S    +      I
Sbjct: 1   SSLRMIHAQMIKTGLHNTNYALS---KLIEFCVLSPHFDGL--PYAISVFETIQEPNLLI 55

Query: 127 NNKLFQ---------QAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTI 177
            N +F+          A+ L+      GL+PN  T   +++ C    +    + IHG  +
Sbjct: 56  WNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVL 115

Query: 178 KLGLILDVSVNNSVLDMY------------------------SCLMD-------LDAAIQ 206
           KLG  LD+ V+ S++ MY                        + L+        ++ A +
Sbjct: 116 KLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALIKGYASRGYIENAQK 175

Query: 207 IFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGD 266
           +F E+  KDV+SW  M+  + +     +AL++F++M K+ +  D   ++ ++S  A  G 
Sbjct: 176 LFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGS 235

Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISG 326
           ++ G+Q+H  +   G  S L++ N++I +YSKCG+++++  +F  ++ K ++SW  +I G
Sbjct: 236 IELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGEVETACGLFEGLSYKDVISWNTLIGG 295

Query: 327 YVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFE--AGF 384
           Y      +EAL  F +M +   +S + +T++SIL A   L A++I   +H    +   G 
Sbjct: 296 YTHMNLYKEALLLFQEMLRS-GESPNDVTMLSILPACAHLGAIDIGRWIHVYINKRLKGV 354

Query: 385 PRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH 444
               S+   LI  Y+KCG+++ A  VF+ M   R + SWN +I+G+ ++G    A  L+ 
Sbjct: 355 TNASSLLTSLIDMYAKCGDIEAAKQVFDSM-LTRSLSSWNAMIFGFAMHGKANAAFDLFS 413

Query: 445 KMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARA 504
           KM + G  PD  T++ +L+AC H+G+ + G  IF  M ++ K+ P  EHYGC++DLL   
Sbjct: 414 KMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHC 473

Query: 505 GCLSDASGLAGKLLEGMGPN--IWRALLSGCVLH 536
           G   +A  +   +   M P+  IW +LL  C +H
Sbjct: 474 GLFKEAKEMIRTM--PMEPDGVIWCSLLKACKMH 505



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 120/477 (25%), Positives = 219/477 (45%), Gaps = 67/477 (14%)

Query: 11  LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
           +LS +F    +  A ++F+ I E N++ W+ +  G++++     ++  +  M+  GLLPN
Sbjct: 30  VLSPHFDG--LPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPN 87

Query: 71  SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------------FE 108
            +T   +L + A  +     + IHG ++K G + DL                      F+
Sbjct: 88  CYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFD 147

Query: 109 GLKNPYLVSCNAIVAGFIN-------NKLF------------------------QQAVLL 137
              +  +VS  A++ G+ +        KLF                        ++A+ L
Sbjct: 148 QSSHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALEL 207

Query: 138 FNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSC 197
           F     + + P+  TM+TV+  C   GS  L   +H      G   ++ + N+++D+YS 
Sbjct: 208 FKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSK 267

Query: 198 LMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNL 257
             +++ A  +F  +  KDVISW  ++G +       +AL +F+EM +S    + V +L++
Sbjct: 268 CGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSI 327

Query: 258 ISVNAILGDLKRGKQLHAQV--VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK 315
           +   A LG +  G+ +H  +   L G+ +   L  S+I MY+KCGD+++++ VF+ +  +
Sbjct: 328 LPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTR 387

Query: 316 SLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQL 375
           SL SW A+I G+  +G A  A + F KMR+   D  D IT V +L+A      L++   +
Sbjct: 388 SLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDP-DDITFVGLLSACSHSGMLDLGRHI 446

Query: 376 HGIAFEAGFPRYRSVQN-----CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
               F +    Y+         C+I     CG    A  +   M    D V W +++
Sbjct: 447 ----FRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLL 499



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 100/349 (28%), Positives = 171/349 (48%), Gaps = 26/349 (7%)

Query: 4   DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
           D  + + L+  Y   G I+ A+ LFDEIP K+VVSW+ +I GY+  G ++++++ F  MM
Sbjct: 153 DVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMM 212

Query: 64  LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
            + + P+  TMV V+ A A   ++EL R +H  +   G  S+                  
Sbjct: 213 KTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGEVE 272

Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
               LFEGL    ++S N ++ G+ +  L+++A+LLF     SG  PN VTML+++  C 
Sbjct: 273 TACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACA 332

Query: 162 ALGSRALCELIHGLTIKL--GLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
            LG+  +   IH    K   G+    S+  S++DMY+   D++AA Q+F  M  + + SW
Sbjct: 333 HLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSW 392

Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
             M+  F     A  A  +F +MRK+ I  D +  + L+S  +  G L  G+ +   +  
Sbjct: 393 NAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQ 452

Query: 280 G-GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISG 326
              +  +L     +I +   CG    ++ +   +  E   V W +++  
Sbjct: 453 DYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKA 501



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 107/387 (27%), Positives = 180/387 (46%), Gaps = 36/387 (9%)

Query: 201 LDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISV 260
           L  AI +F  ++  +++ W  M            AL ++  M    ++ +      L+  
Sbjct: 38  LPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKS 97

Query: 261 NAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSW 320
            A     + G+Q+H  V+  G   +L +  S+I+MY + G L+ +R VF+Q + + +VS+
Sbjct: 98  CAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSY 157

Query: 321 TAI-------------------------------ISGYVQNGCAREALNQFIKMRQEKTD 349
           TA+                               ISGY + G  +EAL  F  M +    
Sbjct: 158 TALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVR 217

Query: 350 SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYI 409
             D  T+V++++A  +  ++E+  Q+H    + GF     + N LI  YSKCG V+ A  
Sbjct: 218 P-DESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGEVETACG 276

Query: 410 VFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAG 469
           +FE + + +DV+SWNT+I GY      + AL L+ +M  +GE P+  T LSIL AC H G
Sbjct: 277 LFEGLSY-KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLG 335

Query: 470 LTNDGLVIFNQMIEENK-VKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRA 528
             + G  I   + +  K V  +      ++D+ A+ G +  A  +   +L     + W A
Sbjct: 336 AIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLT-RSLSSWNA 394

Query: 529 LLSGCVLHVGRFQDAEALRSGSQKKGI 555
           ++ G  +H G+   A  L S  +K GI
Sbjct: 395 MIFGFAMH-GKANAAFDLFSKMRKNGI 420


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.322    0.138    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,422,756,646
Number of Sequences: 23463169
Number of extensions: 337970676
Number of successful extensions: 965344
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8304
Number of HSP's successfully gapped in prelim test: 2613
Number of HSP's that attempted gapping in prelim test: 779432
Number of HSP's gapped (non-prelim): 64686
length of query: 572
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 424
effective length of database: 8,886,646,355
effective search space: 3767938054520
effective search space used: 3767938054520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 80 (35.4 bits)