BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046221
(572 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650
OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2
Length = 1064
Score = 304 bits (778), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 185/563 (32%), Positives = 286/563 (50%), Gaps = 28/563 (4%)
Query: 4 DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
D Y + L+S YF G + AE++F + +++ V+++ +I+G S G+ EK+M+ F M
Sbjct: 322 DTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMH 381
Query: 64 LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-LFEGLKNPYLVSCNAIV 122
L GL P+S T+ ++VA + L + +H K G S+ EG C I
Sbjct: 382 LDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIE 441
Query: 123 AGF-------INNKLFQQAVLL-----------FNFFRG---SGLVPNAVTMLTVIRGCV 161
+ N + +L+ F FR +VPN T ++++ C+
Sbjct: 442 TALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCI 501
Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
LG L E IH IK L+ V + ++DMY+ L LD A I KDV+SWT
Sbjct: 502 RLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTT 561
Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
M+ + + + AL FR+M I D V L N +S A L LK G+Q+HAQ + G
Sbjct: 562 MIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSG 621
Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
S+L N+++ +YS+CG ++ S F Q ++W A++SG+ Q+G EAL F+
Sbjct: 622 FSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFV 681
Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
+M +E D+ ++ T S + A+ E A ++ Q+H + + G+ V N LIS Y+KC
Sbjct: 682 RMNREGIDN-NNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKC 740
Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
G++ A F E+ ++ VSWN II Y +G G AL + +M + P+ T + +
Sbjct: 741 GSISDAEKQFLEVS-TKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGV 799
Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
L+AC H GL + G+ F M E + P EHY CVVD+L RAG LS A ++
Sbjct: 800 LSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKP 859
Query: 522 GPNIWRALLSGCVLH----VGRF 540
+WR LLS CV+H +G F
Sbjct: 860 DALVWRTLLSACVVHKNMEIGEF 882
Score = 170 bits (431), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 147/554 (26%), Positives = 249/554 (44%), Gaps = 39/554 (7%)
Query: 8 SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
S KL Y G + A +FDE+PE+ + +W+ +I + + F M+ +
Sbjct: 123 SEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENV 182
Query: 68 LPNSFTMVGVLVAA-AGLQNLELARSIHGLMVKFGLESD--------------------- 105
PN T GVL A G ++ IH ++ GL
Sbjct: 183 TPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLAR 242
Query: 106 -LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
+F+GL+ S A+++G N+ +A+ LF G++P +V+ C +
Sbjct: 243 RVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIE 302
Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
S + E +HGL +KLG D V N+++ +Y L +L +A IF M +D +++ ++
Sbjct: 303 SLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLIN 362
Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
Y A+++F+ M + D+ L +L+ + G L RG+QLHA G S
Sbjct: 363 GLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFAS 422
Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
++ +++ +Y+KC D++++ F + +++V W ++ Y G + N F R
Sbjct: 423 NNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAY---GLLDDLRNSFRIFR 479
Query: 345 QEKTDSV--DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
Q + + + + T SIL L LE+ Q+H + F V + LI Y+K G
Sbjct: 480 QMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLG 539
Query: 403 NVDLAY-IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
+D A+ I+ G +DVVSW T+I GY + AL + +M + G D +
Sbjct: 540 KLDTAWDILIRFAG--KDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNA 597
Query: 462 LNACGHAGLTNDGLVIFNQMIEE--NKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519
++AC +G I Q + P Q +V L +R G + + S LA + E
Sbjct: 598 VSACAGLQALKEGQQIHAQACVSGFSSDLPFQ---NALVTLYSRCGKIEE-SYLAFEQTE 653
Query: 520 GMGPNI-WRALLSG 532
G NI W AL+SG
Sbjct: 654 A-GDNIAWNALVSG 666
Score = 157 bits (396), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 118/481 (24%), Positives = 215/481 (44%), Gaps = 35/481 (7%)
Query: 11 LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
LL+ Y K I+ A + F E +NVV W++++ Y + S + F M + ++PN
Sbjct: 430 LLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPN 489
Query: 71 SFTMVGVLVAAAGLQNLELARSIHGLMVK--FGLESDLFEGLKNPY-------------- 114
+T +L L +LEL IH ++K F L + + L + Y
Sbjct: 490 QYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILI 549
Query: 115 ------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
+VS ++AG+ +A+ F G+ + V + + C L +
Sbjct: 550 RFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKE 609
Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
+ IH G D+ N+++ +YS ++ + F + E D I+W ++ F
Sbjct: 610 GQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQ 669
Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
+AL++F M + I + + + + ++K+GKQ+HA + G SE +
Sbjct: 670 SGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEV 729
Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
N++I+MY+KCG + + F +++ K+ VSW AII+ Y ++G EAL+ F +M
Sbjct: 730 CNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNV 789
Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAF------EAGFPRYRSVQNCLISSYSKCG 402
+ +TLV +L+A + ++ GIA+ E G C++ ++ G
Sbjct: 790 RP-NHVTLVGVLSACSHIGLVD-----KGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAG 843
Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
+ A +EM D + W T++ V+ + E H + E E DS+TY+ +
Sbjct: 844 LLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLEL-EPEDSATYVLLS 902
Query: 463 N 463
N
Sbjct: 903 N 903
Score = 142 bits (359), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 112/385 (29%), Positives = 184/385 (47%), Gaps = 19/385 (4%)
Query: 93 IHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVT 152
IHG+ K + +F L S AI ++ FQ+ + + G+ PN T
Sbjct: 30 IHGVPRKLKTRT-VFPTLCGTRRASFAAISVYISEDESFQEKRI--DSVENRGIRPNHQT 86
Query: 153 MLTVIRGCVAL-GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM 211
+ ++ GC+ GS +H +KLGL + ++ + D Y DL A ++F EM
Sbjct: 87 LKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEM 146
Query: 212 ECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG- 270
+ + +W +M+ G+ +F R++ + V N + + +L + G
Sbjct: 147 PERTIFTWNKMIKELASRNLIGEVFGLF-----VRMVSENVT-PNEGTFSGVLEACRGGS 200
Query: 271 ------KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAII 324
+Q+HA+++ GL+ + N +I +YS+ G +D +R VF+ + K SW A+I
Sbjct: 201 VAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMI 260
Query: 325 SGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGF 384
SG +N C EA+ F M S+L+A ++ +LEI QLHG+ + GF
Sbjct: 261 SGLSKNECEAEAIRLFCDMYVLGIMPT-PYAFSSVLSACKKIESLEIGEQLHGLVLKLGF 319
Query: 385 PRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH 444
V N L+S Y GN+ A +F M RD V++NT+I G G+GE A+ L+
Sbjct: 320 SSDTYVCNALVSLYFHLGNLISAEHIFSNMS-QRDAVTYNTLINGLSQCGYGEKAMELFK 378
Query: 445 KMTETGEVPDSSTYLSILNACGHAG 469
+M G PDS+T S++ AC G
Sbjct: 379 RMHLDGLEPDSNTLASLVVACSADG 403
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 100/460 (21%), Positives = 196/460 (42%), Gaps = 43/460 (9%)
Query: 3 IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
++ Y S L+ Y K GK+ A ++ K+VVSW+ +I GY+ F +K++ F M
Sbjct: 523 LNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQM 582
Query: 63 MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------- 106
+ G+ + + + A AGLQ L+ + IH G SDL
Sbjct: 583 LDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKI 642
Query: 107 ------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
FE + ++ NA+V+GF + ++A+ +F G+ N T + ++
Sbjct: 643 EESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAA 702
Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
+ + +H + K G + V N+++ MY+ + A + F E+ K+ +SW
Sbjct: 703 SETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWN 762
Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG-KQLHAQVVL 279
++ + + +AL F +M S + + V L+ ++S + +G + +G +
Sbjct: 763 AIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSE 822
Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK-SLVSWTAIISGYVQNG---CARE 335
GL + ++ M ++ G L ++ ++ K + W ++S V +
Sbjct: 823 YGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEF 882
Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQL---HGIAFEAGFPRYRSVQN 392
A + +++ E DS + L ++ S + A ++ Q G+ E G + V+N
Sbjct: 883 AAHHLLELEPE--DSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPG-QSWIEVKN 939
Query: 393 CLISSYSKCGNVDLAYIVFE----------EMGFLRDVVS 422
+ S Y N LA + E E+G+++D S
Sbjct: 940 SIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFS 979
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 295 bits (756), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 175/556 (31%), Positives = 301/556 (54%), Gaps = 23/556 (4%)
Query: 3 IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
ID SKL Y G +KEA +FDE+ + + W+I+++ + +G S+ F M
Sbjct: 127 IDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKM 186
Query: 63 MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL-------------------- 102
M SG+ +S+T V + + L+++ +HG ++K G
Sbjct: 187 MSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRV 246
Query: 103 --ESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
+F+ + ++S N+I+ G+++N L ++ + +F SG+ + T+++V GC
Sbjct: 247 DSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGC 306
Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
+L +H + +K + N++LDMYS DLD+A +FREM + V+S+T
Sbjct: 307 ADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYT 366
Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
M+ + AG+A+K+F EM + I D + +++ A L GK++H +
Sbjct: 367 SMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKEN 426
Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
L ++ +SN+++ MY+KCG + + VF+++ K ++SW II GY +N A EAL+ F
Sbjct: 427 DLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLF 486
Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
+ +EK S D T+ +L A L+A + ++HG G+ R V N L+ Y+K
Sbjct: 487 NLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAK 546
Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
CG + LA+++F+++ +D+VSW +I GYG++G G+ A+AL+++M + G D +++S
Sbjct: 547 CGALLLAHMLFDDIA-SKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVS 605
Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
+L AC H+GL ++G FN M E K++P+ EHY C+VD+LAR G L A +
Sbjct: 606 LLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIP 665
Query: 521 MGPNIWRALLSGCVLH 536
IW ALL GC +H
Sbjct: 666 PDATIWGALLCGCRIH 681
Score = 189 bits (480), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 128/480 (26%), Positives = 233/480 (48%), Gaps = 35/480 (7%)
Query: 11 LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
L++ Y K+ ++ A +FDE+ E++V+SW+ +I+GY NG EK + F M++SG+ +
Sbjct: 236 LVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEID 295
Query: 71 SFTMVGVLVAAAGLQNLELARSIHGLMVK--FGLESD--------------------LFE 108
T+V V A + + L R++H + VK F E +F
Sbjct: 296 LATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFR 355
Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
+ + +VS +++AG+ L +AV LF G+ P+ T+ V+ C
Sbjct: 356 EMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDE 415
Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
+ +H + L D+ V+N+++DMY+ + A +F EM KD+ISW ++G +
Sbjct: 416 GKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSK 475
Query: 229 FEYAGDALKIFREM-RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
YA +AL +F + + R D + ++ A L +G+++H ++ G S+
Sbjct: 476 NCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRH 535
Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
++NS++ MY+KCG L + +F+ I K LVSWT +I+GY +G +EA+ F +MRQ
Sbjct: 536 VANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAG 595
Query: 348 TDSVDSITLVSILTASGELAALE-----ICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
++ D I+ VS+L A ++ + H E Y C++ ++ G
Sbjct: 596 IEA-DEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHY----ACIVDMLARTG 650
Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
++ AY E M D W ++ G ++ + A + K+ E P+++ Y ++
Sbjct: 651 DLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELE--PENTGYYVLM 708
Score = 155 bits (393), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 114/388 (29%), Positives = 197/388 (50%), Gaps = 25/388 (6%)
Query: 141 FRGSGLVPNAVTMLTVIRGCVALGSRALCELIH----GLTIKLGLILD--VSVNNSVLD- 193
F SG + NAV +L V G + R LC ++ ++K G +D + N V+D
Sbjct: 71 FCESGNLENAVKLLCV-SGKWDIDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDS 129
Query: 194 --------MYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGD---ALKIFREM 242
MY+ DL A ++F E++ + + W +M + +GD ++ +F++M
Sbjct: 130 NLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMN---ELAKSGDFSGSIGLFKKM 186
Query: 243 RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDL 302
S + D+ + + L + G+QLH ++ G + NS++A Y K +
Sbjct: 187 MSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRV 246
Query: 303 DSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTA 362
DS+R VF+++TE+ ++SW +II+GYV NG A + L+ F++M + +D T+VS+
Sbjct: 247 DSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIE-IDLATIVSVFAG 305
Query: 363 SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVS 422
+ + + +H I +A F R N L+ YSKCG++D A VF EM R VVS
Sbjct: 306 CADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMS-DRSVVS 364
Query: 423 WNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMI 482
+ ++I GY G A+ L+ +M E G PD T ++LN C L ++G + ++ I
Sbjct: 365 YTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRV-HEWI 423
Query: 483 EENKVKPSQEHYGCVVDLLARAGCLSDA 510
+EN + ++D+ A+ G + +A
Sbjct: 424 KENDLGFDIFVSNALMDMYAKCGSMQEA 451
>sp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protein At3g03580
OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1
Length = 882
Score = 293 bits (749), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 181/591 (30%), Positives = 311/591 (52%), Gaps = 35/591 (5%)
Query: 4 DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
D + + L+ Y + G + A +FDE+P +++VSW+ +I GYS +G++E++++ + +
Sbjct: 140 DLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELK 199
Query: 64 LSGLLPNSFTMVGVLVAAAGLQNLELARSIHG-------------------LMVKFGLES 104
S ++P+SFT+ VL A L ++ + +HG + +KF +
Sbjct: 200 NSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPT 259
Query: 105 D---LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
D +F+ + VS N ++ G++ ++ +++V +F P+ +T+ +V+R C
Sbjct: 260 DARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMF-LENLDQFKPDLLTVSSVLRACG 318
Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
L +L + I+ +K G +L+ +V N ++D+Y+ D+ A +F MECKD +SW
Sbjct: 319 HLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNS 378
Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
++ ++ +A+K+F+ M D + L LISV+ L DLK GK LH+ + G
Sbjct: 379 IISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSG 438
Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
+ +L +SN++I MY+KCG++ S +F+ + V+W +IS V+ G L
Sbjct: 439 ICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTT 498
Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
+MR+ + D T + L LAA + ++H G+ + N LI YSKC
Sbjct: 499 QMRKSEV-VPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKC 557
Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
G ++ + VFE M RDVV+W +IY YG+ G GE AL + M ++G VPDS +++I
Sbjct: 558 GCLENSSRVFERMS-RRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAI 616
Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
+ AC H+GL ++GL F +M K+ P EHY CVVDLL+R+ +S A +
Sbjct: 617 IYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKP 676
Query: 522 GPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIKI----PGISFLNSTS 568
+IW ++L C G + AE + + II++ PG S L S +
Sbjct: 677 DASIWASVLRACRTS-GDMETAERV-----SRRIIELNPDDPGYSILASNA 721
Score = 190 bits (483), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 145/530 (27%), Positives = 267/530 (50%), Gaps = 33/530 (6%)
Query: 8 SSKLLSNYFKSGKIKEAENLFDEI-PEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSG 66
S KL+ Y + + ++F + P KNV W+ +I +S NG ++++ + + S
Sbjct: 42 SGKLIDKYSHFREPASSLSVFRRVSPAKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESK 101
Query: 67 LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPY---------- 114
+ P+ +T V+ A AGL + E+ ++ ++ G ESDLF G L + Y
Sbjct: 102 VSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFESDLFVGNALVDMYSRMGLLTRAR 161
Query: 115 ----------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
LVS N++++G+ ++ +++A+ +++ + S +VP++ T+ +V+ L
Sbjct: 162 QVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLL 221
Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
+ +HG +K G+ V VNN ++ MY A ++F EM+ +D +S+ M+
Sbjct: 222 VVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMIC 281
Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
++ E +++++F E + D + + +++ L DL K ++ ++ G
Sbjct: 282 GYLKLEMVEESVRMFLE-NLDQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVL 340
Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
E + N +I +Y+KCGD+ ++R VFN + K VSW +IISGY+Q+G EA+ F KM
Sbjct: 341 ESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLF-KMM 399
Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
+ D IT + +++ S LA L+ LH ++G SV N LI Y+KCG V
Sbjct: 400 MIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEV 459
Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
+ +F MG D V+WNT+I G T L + +M ++ VPD +T+L L
Sbjct: 460 GDSLKIFSSMG-TGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPM 518
Query: 465 CGHAGLTNDGLVIFNQMIE---ENKVKPSQEHYGCVVDLLARAGCLSDAS 511
C G I ++ E++++ ++++ ++ GCL ++S
Sbjct: 519 CASLAAKRLGKEIHCCLLRFGYESELQIGN----ALIEMYSKCGCLENSS 564
Score = 177 bits (449), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 144/515 (27%), Positives = 251/515 (48%), Gaps = 49/515 (9%)
Query: 80 AAAGLQNLELARSIHGLMVKFGLES-DLFEG------------------------LKNPY 114
A + NL R IH L++ GL+S D F G KN Y
Sbjct: 13 ALSSSSNLNELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAKNVY 72
Query: 115 LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHG 174
L N+I+ F N LF +A+ + R S + P+ T +VI+ C L + +L++
Sbjct: 73 L--WNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYE 130
Query: 175 LTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGD 234
+ +G D+ V N+++DMYS + L A Q+F EM +D++SW ++ + Y +
Sbjct: 131 QILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEE 190
Query: 235 ALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIA 294
AL+I+ E++ S I+ D+ + +++ L +K+G+ LH + G+ S + ++N ++A
Sbjct: 191 ALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVA 250
Query: 295 MYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK-MRQEKTDSVDS 353
MY K +R VF+++ + VS+ +I GY++ E++ F++ + Q K D
Sbjct: 251 MYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENLDQFKP---DL 307
Query: 354 ITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEE 413
+T+ S+L A G L L + ++ +AGF +V+N LI Y+KCG++ A VF
Sbjct: 308 LTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNS 367
Query: 414 MGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTND 473
M +D VSWN+II GY +G A+ L+ M E D TYL +++ T
Sbjct: 368 ME-CKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVS-----TRL 421
Query: 474 GLVIFNQMIEENKVKP----SQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI-WRA 528
+ F + + N +K ++D+ A+ G + D+ + + G G + W
Sbjct: 422 ADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSM--GTGDTVTWNT 479
Query: 529 LLSGCVLHVGRFQD-AEALRSGSQKKGIIKIPGIS 562
++S CV RF D A L+ +Q + +P ++
Sbjct: 480 VISACV----RFGDFATGLQVTTQMRKSEVVPDMA 510
Score = 169 bits (427), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 134/489 (27%), Positives = 237/489 (48%), Gaps = 40/489 (8%)
Query: 11 LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
L++ Y K + +A +FDE+ ++ VS++ +I GY E+S++ F L P+
Sbjct: 248 LVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLEN-LDQFKPD 306
Query: 71 SFTMVGVLVAAAGLQNLELARSIHGLMVKFG--LES--------------------DLFE 108
T+ VL A L++L LA+ I+ M+K G LES D+F
Sbjct: 307 LLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFN 366
Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
++ VS N+I++G+I + +A+ LF + +T L +I L
Sbjct: 367 SMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKF 426
Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
+ +H IK G+ +D+SV+N+++DMY+ ++ +++IF M D ++W ++ V
Sbjct: 427 GKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVR 486
Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
F L++ +MRKS ++ D L + + A L + GK++H ++ G +SEL++
Sbjct: 487 FGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQI 546
Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
N++I MYSKCG L++S VF +++ + +V+WT +I Y G +AL F M EK+
Sbjct: 547 GNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADM--EKS 604
Query: 349 DSV-DSITLVSILTASGELAALEICLQLHGIA-FEAGFPRYR-----SVQNCLISSYSKC 401
V DS+ ++I+ A ++ G+A FE Y+ C++ S+
Sbjct: 605 GIVPDSVVFIAIIYACSHSGLVD-----EGLACFEKMKTHYKIDPMIEHYACVVDLLSRS 659
Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
+ A + M D W +++ +G ETA + ++ E PD Y SI
Sbjct: 660 QKISKAEEFIQAMPIKPDASIWASVLRACRTSGDMETAERVSRRIIELN--PDDPGY-SI 716
Query: 462 LNACGHAGL 470
L + +A L
Sbjct: 717 LASNAYAAL 725
Score = 56.2 bits (134), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 78/181 (43%), Gaps = 22/181 (12%)
Query: 2 CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
CID S+ L+ Y K G++ ++ +F + + V+W+ VI G ++ +
Sbjct: 440 CIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQ 499
Query: 62 MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL--------------- 106
M S ++P+ T + L A L L + IH +++FG ES+L
Sbjct: 500 MRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGC 559
Query: 107 -------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
FE + +V+ ++ + ++A+ F SG+VP++V + +I
Sbjct: 560 LENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYA 619
Query: 160 C 160
C
Sbjct: 620 C 620
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 286 bits (733), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 174/550 (31%), Positives = 297/550 (54%), Gaps = 24/550 (4%)
Query: 9 SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
+KL+S + + G + EA +F+ I K V + ++ G++ +K+++ F M +
Sbjct: 73 TKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVE 132
Query: 69 PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPY------------ 114
P + +L L + + IHGL+VK G DLF GL+N Y
Sbjct: 133 PVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKV 192
Query: 115 --------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
LVS N IVAG+ N + + A+ + L P+ +T+++V+ AL
Sbjct: 193 FDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLI 252
Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
++ + IHG ++ G V+++ +++DMY+ L+ A Q+F M ++V+SW M+ +
Sbjct: 253 SVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAY 312
Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
V E +A+ IF++M + V+++ + A LGDL+RG+ +H V GL +
Sbjct: 313 VQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNV 372
Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
+ NS+I+MY KC ++D++ S+F ++ ++LVSW A+I G+ QNG +ALN F +MR
Sbjct: 373 SVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRS- 431
Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
+T D+ T VS++TA EL+ +HG+ + + V L+ Y+KCG + +
Sbjct: 432 RTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMI 491
Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
A ++F+ M R V +WN +I GYG +G G+ AL L+ +M + P+ T+LS+++AC
Sbjct: 492 ARLIFDMMS-ERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACS 550
Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIW 526
H+GL GL F M E ++ S +HYG +VDLL RAG L++A ++ N++
Sbjct: 551 HSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVY 610
Query: 527 RALLSGCVLH 536
A+L C +H
Sbjct: 611 GAMLGACQIH 620
Score = 188 bits (477), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 108/394 (27%), Positives = 206/394 (52%), Gaps = 23/394 (5%)
Query: 3 IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
+D + + L + Y K ++ EA +FD +PE+++VSW+ ++ GYS NG +++ M
Sbjct: 168 LDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSM 227
Query: 63 MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES------------------ 104
L P+ T+V VL A + L+ + + + IHG ++ G +S
Sbjct: 228 CEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSL 287
Query: 105 ----DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
LF+G+ +VS N+++ ++ N+ ++A+L+F G+ P V+++ + C
Sbjct: 288 ETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHAC 347
Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
LG IH L+++LGL +VSV NS++ MY ++D A +F +++ + ++SW
Sbjct: 348 ADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWN 407
Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
M+ F DAL F +MR + DT +++I+ A L K +H V+
Sbjct: 408 AMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRS 467
Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
L + ++ +++ MY+KCG + +R +F+ ++E+ + +W A+I GY +G + AL F
Sbjct: 468 CLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELF 527
Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQ 374
+M Q+ T + +T +S+++A +E L+
Sbjct: 528 EEM-QKGTIKPNGVTFLSVISACSHSGLVEAGLK 560
Score = 32.7 bits (73), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 367 AALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTI 426
++L+ Q+ + F+ G + Q L+S + + G+VD A VFE + +V+ ++T+
Sbjct: 48 SSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVL-YHTM 106
Query: 427 IYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
+ G+ + AL + +M P + +L CG
Sbjct: 107 LKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCG 146
>sp|Q9SS97|PP205_ARATH Putative pentatricopeptide repeat-containing protein At3g01580
OS=Arabidopsis thaliana GN=PCMP-E87 PE=3 SV=2
Length = 660
Score = 284 bits (726), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 173/558 (31%), Positives = 291/558 (52%), Gaps = 36/558 (6%)
Query: 23 EAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAA 82
+A +F E+ ++++ W+ ++ S E+ + FSHM P++FT+ L A
Sbjct: 12 DARQMFGEMTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKACG 71
Query: 83 GLQNLELARSIHGLMVK-FGLESDL----------------------FEGLKNPYLVSCN 119
L+ + IHG + K L SDL F+ L+ P +V+ +
Sbjct: 72 ELREVNYGEMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKPDIVTWS 131
Query: 120 AIVAGFINNKLFQQAVLLFNFFR----GSGLVPNAVTMLTVIRGCVALGSRALCELIHGL 175
++V+GF N QAV FFR S + P+ VT++T++ C L + L +HG
Sbjct: 132 SMVSGFEKNGSPYQAV---EFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCVHGF 188
Query: 176 TIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDA 235
I+ G D+S+ NS+L+ Y+ A+ +F+ + KDVISW+ ++ +V A +A
Sbjct: 189 VIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAAAEA 248
Query: 236 LKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAM 295
L +F +M + +L ++ A DL++G++ H + GL++E+++S +++ M
Sbjct: 249 LLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVSTALVDM 308
Query: 296 YSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSIT 355
Y KC + + +VF++I K +VSW A+ISG+ NG A ++ +F M E D+I
Sbjct: 309 YMKCFSPEEAYAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAIL 368
Query: 356 LVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMG 415
+V +L + EL LE H + GF + L+ YS+CG++ A VF +
Sbjct: 369 MVKVLGSCSELGFLEQAKCFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIA 428
Query: 416 FLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV-PDSSTYLSILNACGHAGLTNDG 474
L+D V W ++I GYG++G G AL ++ M ++ EV P+ T+LSIL+AC HAGL ++G
Sbjct: 429 -LKDTVVWTSLITGYGIHGKGTKALETFNHMVKSSEVKPNEVTFLSILSACSHAGLIHEG 487
Query: 475 LVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCV 534
L IF M+ + ++ P+ EHY +VDLL R G L A + ++ P I LL C
Sbjct: 488 LRIFKLMVNDYRLAPNLEHYAVLVDLLGRVGDLDTAIEITKRMPFSPTPQILGTLLGACR 547
Query: 535 LHVGRFQDAEALRSGSQK 552
+H Q+ E + ++K
Sbjct: 548 IH----QNGEMAETVAKK 561
Score = 176 bits (446), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 129/495 (26%), Positives = 235/495 (47%), Gaps = 34/495 (6%)
Query: 4 DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM- 62
D Y S L+ Y K G++ EA +FDE+ + ++V+WS ++ G+ NG ++++ F M
Sbjct: 95 DLYVGSSLIYMYIKCGRMIEALRMFDELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMV 154
Query: 63 MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
M S + P+ T++ ++ A L N L R +HG +++ G +D
Sbjct: 155 MASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVIRRGFSNDLSLVNSLLNCYAKSRAF 214
Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
LF+ + ++S + ++A ++ N +A+L+FN G PN T+L V++ C
Sbjct: 215 KEAVNLFKMIAEKDVISWSTVIACYVQNGAAAEALLVFNDMMDDGTEPNVATVLCVLQAC 274
Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
A H L I+ GL +V V+ +++DMY + A +F + KDV+SW
Sbjct: 275 AAAHDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPRKDVVSWV 334
Query: 221 RMMGLFVDFEYAGDALKIFREM-RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
++ F A +++ F M ++ D + ++ ++ + LG L++ K H+ V+
Sbjct: 335 ALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMVKVLGSCSELGFLEQAKCFHSYVIK 394
Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
G S + S++ +YS+CG L ++ VFN I K V WT++I+GY +G +AL
Sbjct: 395 YGFDSNPFIGASLVELYSRCGSLGNASKVFNGIALKDTVVWTSLITGYGIHGKGTKALET 454
Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN-----CL 394
F M + + +T +SIL+A + L++ F+ YR N L
Sbjct: 455 FNHMVKSSEVKPNEVTFLSILSACSHAGLIHEGLRI----FKLMVNDYRLAPNLEHYAVL 510
Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
+ + G++D A + + M F T++ ++ +GE A + K+ E E
Sbjct: 511 VDLLGRVGDLDTAIEITKRMPFSPTPQILGTLLGACRIHQNGEMAETVAKKLFEL-ESNH 569
Query: 455 SSTYLSILNACGHAG 469
+ Y+ + N G G
Sbjct: 570 AGYYMLMSNVYGVKG 584
>sp|Q9SVA5|PP357_ARATH Pentatricopeptide repeat-containing protein At4g39530
OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1
Length = 834
Score = 280 bits (717), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 180/559 (32%), Positives = 288/559 (51%), Gaps = 36/559 (6%)
Query: 4 DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
D Y + L+ Y K G I A +FD +PEK+ V+W+ +I G G S++ F +M
Sbjct: 182 DVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLM 241
Query: 64 LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
++P+ + + VL A + L LE + IH ++++GLE D
Sbjct: 242 EDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVI 301
Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
LF G+ N ++S +++G+ N L ++A+ LF GL P+ +++ C
Sbjct: 302 AAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCA 361
Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYS---CLMDLDAAIQIFREMECKDVIS 218
+L + +H TIK L D V NS++DMY+ CL D A ++F DV+
Sbjct: 362 SLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTD---ARKVFDIFAAADVVL 418
Query: 219 WTRMM----GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
+ M+ L +E +AL IFR+MR I + ++L+ +A L L KQ+H
Sbjct: 419 FNAMIEGYSRLGTQWELH-EALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIH 477
Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
+ GL ++ +++I +YS C L SR VF+++ K LV W ++ +GYVQ
Sbjct: 478 GLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENE 537
Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
EALN F+++ Q + D T +++TA+G LA++++ + H + G + N L
Sbjct: 538 EALNLFLEL-QLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNAL 596
Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
+ Y+KCG+ + A+ F+ RDVV WN++I Y +G G+ AL + KM G P+
Sbjct: 597 LDMYAKCGSPEDAHKAFDSAAS-RDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPN 655
Query: 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLA 514
T++ +L+AC HAGL DGL F M+ ++P EHY C+V LL RAG L+ A L
Sbjct: 656 YITFVGVLSACSHAGLVEDGLKQFELMLRFG-IEPETEHYVCMVSLLGRAGRLNKARELI 714
Query: 515 GKLLEGMGPNIWRALLSGC 533
K+ +WR+LLSGC
Sbjct: 715 EKMPTKPAAIVWRSLLSGC 733
Score = 191 bits (485), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 125/503 (24%), Positives = 236/503 (46%), Gaps = 27/503 (5%)
Query: 11 LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
L+ +Y K G++ A LF+ +P KN++SW+ ++ GY N H+++M+ F+ M GL P+
Sbjct: 290 LIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPD 349
Query: 71 SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFE 108
+ +L + A L L +H +K L +D +F+
Sbjct: 350 MYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFD 409
Query: 109 GLKNPYLVSCNAIVAGFI---NNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
+V NA++ G+ +A+ +F R + P+ +T ++++R +L S
Sbjct: 410 IFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTS 469
Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
L + IHGL K GL LD+ ++++D+YS L + +F EM+ KD++ W M
Sbjct: 470 LGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAG 529
Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
+V +AL +F E++ SR D N+++ L ++ G++ H Q++ GL+
Sbjct: 530 YVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECN 589
Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
++N+++ MY+KCG + + F+ + +V W ++IS Y +G ++AL KM
Sbjct: 590 PYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMS 649
Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
E + + IT V +L+A +E L+ + G C++S + G ++
Sbjct: 650 EGIEP-NYITFVGVLSACSHAGLVEDGLKQFELMLRFGIEPETEHYVCMVSLLGRAGRLN 708
Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
A + E+M + W +++ G G+ E A +M + DS ++ + N
Sbjct: 709 KARELIEKMPTKPAAIVWRSLLSGCAKAGNVELA-EHAAEMAILSDPKDSGSFTMLSNIY 767
Query: 466 GHAGLTNDGLVIFNQMIEENKVK 488
G+ + + +M E VK
Sbjct: 768 ASKGMWTEAKKVRERMKVEGVVK 790
Score = 183 bits (464), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 144/536 (26%), Positives = 262/536 (48%), Gaps = 31/536 (5%)
Query: 3 IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
+D Y S+ L++ Y ++G + A +F+++PE+N+VSWS ++ + +G +E+S+ F
Sbjct: 77 LDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLEF 136
Query: 63 MLSGL-LPNSFTMVGVLVAAAGL--QNLELARSIHGLMVKFGLESDLFEG--LKNPYLVS 117
+ PN + + + A +GL + + + +VK G + D++ G L + YL
Sbjct: 137 WRTRKDSPNEYILSSFIQACSGLDGRGRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKD 196
Query: 118 CNAIVAGFINNKLFQQAVL--------------------LFNFFRGSGLVPNAVTMLTVI 157
N A + + L +++ + LF +VP+ + TV+
Sbjct: 197 GNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVL 256
Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
C L + IH ++ GL +D S+ N ++D Y + AA ++F M K++I
Sbjct: 257 SACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNII 316
Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
SWT ++ + +A+++F M K + D A ++++ A L L G Q+HA
Sbjct: 317 SWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAYT 376
Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA---R 334
+ L ++ ++NS+I MY+KC L +R VF+ +V + A+I GY + G
Sbjct: 377 IKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQWELH 436
Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
EALN F MR + +T VS+L AS L +L + Q+HG+ F+ G + L
Sbjct: 437 EALNIFRDMRF-RLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSAL 495
Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
I YS C + + +VF+EM ++D+V WN++ GY E AL L+ ++ + E PD
Sbjct: 496 IDVYSNCYCLKDSRLVFDEMK-VKDLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPD 554
Query: 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
T+ +++ A G+ G Q+++ ++ + ++D+ A+ G DA
Sbjct: 555 EFTFANMVTAAGNLASVQLGQEFHCQLLKRG-LECNPYITNALLDMYAKCGSPEDA 609
Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 131/491 (26%), Positives = 226/491 (46%), Gaps = 53/491 (10%)
Query: 93 IHGLMVKFGLESD----------------------LFEGLKNPYLVSCNAIVAGFINNKL 130
+HG ++ +GLE D +FE + LVS + +V+ ++ +
Sbjct: 66 VHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGI 125
Query: 131 FQQAVLLF-NFFRGSGLVPNAVTMLTVIRGCVALGSRA--LCELIHGLTIKLGLILDVSV 187
+++++++F F+R PN + + I+ C L R + + +K G DV V
Sbjct: 126 YEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDGRGRWMVFQLQSFLVKSGFDRDVYV 185
Query: 188 NNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRI 247
++D Y ++D A +F + K ++WT M+ V + +L++F ++ + +
Sbjct: 186 GTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNV 245
Query: 248 ICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRS 307
+ D L ++S +IL L+ GKQ+HA ++ GL+ + L N +I Y KCG + ++
Sbjct: 246 VPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHK 305
Query: 308 VFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELA 367
+FN + K+++SWT ++SGY QN +EA+ F M + D SILT+ L
Sbjct: 306 LFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKP-DMYACSSILTSCASLH 364
Query: 368 ALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
AL Q+H +A V N LI Y+KC + A VF+ DVV +N +I
Sbjct: 365 ALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFA-AADVVLFNAMI 423
Query: 428 YGY---GVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEE 484
GY G AL ++ M P T++S+L A A LT+ GL
Sbjct: 424 EGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRAS--ASLTSLGL--------S 473
Query: 485 NKVKPSQEHYGCVVDLLARAG---------CLSDASGLAGKLLEGMGPNIWRALLSGCVL 535
++ YG +D+ A + CL D S L ++ IW ++ +G
Sbjct: 474 KQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKD-SRLVFDEMKVKDLVIWNSMFAG--- 529
Query: 536 HVGRFQDAEAL 546
+V + ++ EAL
Sbjct: 530 YVQQSENEEAL 540
Score = 132 bits (333), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 172/344 (50%), Gaps = 8/344 (2%)
Query: 171 LIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFE 230
++HG I GL LD ++N ++++YS + A ++F +M ++++SW+ M+
Sbjct: 65 VVHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHG 124
Query: 231 YAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGK----QLHAQVVLGGLQSEL 286
++L +F E ++R +L+ + A G RG+ QL + +V G ++
Sbjct: 125 IYEESLVVFLEFWRTRKDSPNEYILSSF-IQACSGLDGRGRWMVFQLQSFLVKSGFDRDV 183
Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
+ +I Y K G++D +R VF+ + EKS V+WT +ISG V+ G + +L F ++ ++
Sbjct: 184 YVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMED 243
Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
D L ++L+A L LE Q+H G S+ N LI SY KCG V
Sbjct: 244 NV-VPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIA 302
Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
A+ +F M ++++SW T++ GY N + A+ L+ M++ G PD SIL +C
Sbjct: 303 AHKLFNGMPN-KNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCA 361
Query: 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
G + I+ N S ++D+ A+ CL+DA
Sbjct: 362 SLHALGFGTQVHAYTIKANLGNDSYVT-NSLIDMYAKCDCLTDA 404
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 86/184 (46%), Gaps = 22/184 (11%)
Query: 3 IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
+D + S L+ Y +K++ +FDE+ K++V W+ + GY +E+++ F +
Sbjct: 487 LDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLEL 546
Query: 63 MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES---------DLFEGLKNP 113
LS P+ FT ++ AA L +++L + H ++K GLE D++ +P
Sbjct: 547 QLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSP 606
Query: 114 Y-------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
+V N++++ + N+ ++A+ + G+ PN +T + V+ C
Sbjct: 607 EDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSAC 666
Query: 161 VALG 164
G
Sbjct: 667 SHAG 670
>sp|Q9LYV3|PP377_ARATH Putative pentatricopeptide repeat-containing protein At5g13230,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H89 PE=3
SV=1
Length = 822
Score = 278 bits (711), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 173/557 (31%), Positives = 293/557 (52%), Gaps = 36/557 (6%)
Query: 2 CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
C+D + ++ LL+ Y K+G K+A NLFDE+PE+N VS+ + GY+ + + +S
Sbjct: 81 CLDLFATNILLNAYVKAGFDKDALNLFDEMPERNNVSFVTLAQGYAC----QDPIGLYSR 136
Query: 62 MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------- 105
+ G N L L E+ +H +VK G +S+
Sbjct: 137 LHREGHELNPHVFTSFLKLFVSLDKAEICPWLHSPIVKLGYDSNAFVGAALINAYSVCGS 196
Query: 106 ------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
+FEG+ +V IV+ ++ N F+ ++ L + R +G +PN T T ++
Sbjct: 197 VDSARTVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKA 256
Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
+ LG+ + +HG +K +LD V +L +Y+ L D+ A ++F EM DV+ W
Sbjct: 257 SIGLGAFDFAKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPW 316
Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
+ M+ F + +A+ +F MR++ ++ + L ++++ AI G+QLH VV
Sbjct: 317 SFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVK 376
Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
G ++ +SN++I +Y+KC +D++ +F +++ K+ VSW +I GY G +A +
Sbjct: 377 VGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSM 436
Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
F + + + SV +T S L A LA++++ +Q+HG+A + + +V N LI Y+
Sbjct: 437 FREALRNQV-SVTEVTFSSALGACASLASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYA 495
Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
KCG++ A VF EM + DV SWN +I GY +G G AL + M + P+ T+L
Sbjct: 496 KCGDIKFAQSVFNEMETI-DVASWNALISGYSTHGLGRQALRILDIMKDRDCKPNGLTFL 554
Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519
+L+ C +AGL + G F MI ++ ++P EHY C+V LL R+G L A KL+E
Sbjct: 555 GVLSGCSNAGLIDQGQECFESMIRDHGIEPCLEHYTCMVRLLGRSGQLDKAM----KLIE 610
Query: 520 GMG--PN--IWRALLSG 532
G+ P+ IWRA+LS
Sbjct: 611 GIPYEPSVMIWRAMLSA 627
Score = 154 bits (388), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 120/454 (26%), Positives = 212/454 (46%), Gaps = 16/454 (3%)
Query: 98 VKFGLESD---LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTML 154
VK G + D LF+ + VS + G+ Q + L++ G N
Sbjct: 95 VKAGFDKDALNLFDEMPERNNVSFVTLAQGYA----CQDPIGLYSRLHREGHELNPHVFT 150
Query: 155 TVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
+ ++ V+L +C +H +KLG + V ++++ YS +D+A +F + CK
Sbjct: 151 SFLKLFVSLDKAEICPWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARTVFEGILCK 210
Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
D++ W ++ +V+ Y D+LK+ MR + + + + + LG K +H
Sbjct: 211 DIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGAFDFAKGVH 270
Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
Q++ + R+ ++ +Y++ GD+ + VFN++ + +V W+ +I+ + QNG
Sbjct: 271 GQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCN 330
Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
EA++ FI+MR E + TL SIL + QLHG+ + GF V N L
Sbjct: 331 EAVDLFIRMR-EAFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDIYVSNAL 389
Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
I Y+KC +D A +F E+ ++ VSWNT+I GY G G A +++ +
Sbjct: 390 IDVYAKCEKMDTAVKLFAELSS-KNEVSWNTVIVGYENLGEGGKAFSMFREALRNQVSVT 448
Query: 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLA 514
T+ S L AC + G+ + I+ N K ++D+ A+ G + A +
Sbjct: 449 EVTFSSALGACASLASMDLGVQVHGLAIKTNNAKKVAVS-NSLIDMYAKCGDIKFAQSVF 507
Query: 515 GKLLEGMGPNIWRALLSGCVLH-VGRFQDAEALR 547
+ +E + W AL+SG H +GR +ALR
Sbjct: 508 NE-METIDVASWNALISGYSTHGLGR----QALR 536
Score = 99.0 bits (245), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 143/313 (45%), Gaps = 8/313 (2%)
Query: 155 TVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMY-SCLMDLDAAIQIFREMEC 213
++R C+ + IH +K G LD+ N +L+ Y D D A+ +F EM
Sbjct: 54 AMLRRCIQKNDPISAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKD-ALNLFDEMPE 112
Query: 214 KDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQL 273
++ +S+ + + D + ++ + + + + + + L + L
Sbjct: 113 RNNVSFVTLAQGYA----CQDPIGLYSRLHREGHELNPHVFTSFLKLFVSLDKAEICPWL 168
Query: 274 HAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA 333
H+ +V G S + ++I YS CG +DS+R+VF I K +V W I+S YV+NG
Sbjct: 169 HSPIVKLGYDSNAFVGAALINAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVENGYF 228
Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC 393
++L MR ++ T + L AS L A + +HG + + V
Sbjct: 229 EDSLKLLSCMRMAGF-MPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVG 287
Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
L+ Y++ G++ A+ VF EM DVV W+ +I + NG A+ L+ +M E VP
Sbjct: 288 LLQLYTQLGDMSDAFKVFNEMP-KNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVP 346
Query: 454 DSSTYLSILNACG 466
+ T SILN C
Sbjct: 347 NEFTLSSILNGCA 359
>sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510
OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1
Length = 825
Score = 277 bits (709), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 167/562 (29%), Positives = 272/562 (48%), Gaps = 28/562 (4%)
Query: 1 PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
P + +++ ++S + K+G + A +LFD +P++ VV+W+I++ Y+ N +++ K F
Sbjct: 75 PHKNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFR 134
Query: 61 HMMLSG--LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------- 105
M S LP+ T +L +H VK G +++
Sbjct: 135 QMCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSY 194
Query: 106 -----------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTML 154
LFE + V+ N ++ G+ + L+ +++ LF R SG P+ T
Sbjct: 195 CEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFS 254
Query: 155 TVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
V++ V L AL + +H L++ G D SV N +LD YS + +F EM
Sbjct: 255 GVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPEL 314
Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
D +S+ ++ + + +L FREM+ ++S+ A L L+ G+QLH
Sbjct: 315 DFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLH 374
Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
Q +L S L + NS++ MY+KC + + +F + +++ VSWTA+ISGYVQ G
Sbjct: 375 CQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHG 434
Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
L F KMR D T ++L AS A+L + QLH +G + L
Sbjct: 435 AGLKLFTKMRGSNL-RADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGL 493
Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
+ Y+KCG++ A VFEEM R+ VSWN +I + NG GE A+ + KM E+G PD
Sbjct: 494 VDMYAKCGSIKDAVQVFEEMP-DRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPD 552
Query: 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLA 514
S + L +L AC H G G F M + P ++HY C++DLL R G ++A L
Sbjct: 553 SVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLM 612
Query: 515 GKLLEGMGPNIWRALLSGCVLH 536
++ +W ++L+ C +H
Sbjct: 613 DEMPFEPDEIMWSSVLNACRIH 634
Score = 171 bits (432), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 123/489 (25%), Positives = 223/489 (45%), Gaps = 32/489 (6%)
Query: 8 SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
S+ LL +Y + ++ A LF+EIPEK+ V+++ +I GY +G + +S+ F M SG
Sbjct: 187 SNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGH 246
Query: 68 LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
P+ FT GVL A GL + L + +H L V G D
Sbjct: 247 QPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRM 306
Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
LF+ + VS N +++ + ++ ++ F + G T++ L S
Sbjct: 307 LFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSS 366
Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
+ +H + + V NS++DMY+ + A IF+ + + +SWT ++
Sbjct: 367 LQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISG 426
Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
+V G LK+F +MR S + D ++ +A L GKQLHA ++ G
Sbjct: 427 YVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLEN 486
Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
+ + ++ MY+KCG + + VF ++ +++ VSW A+IS + NG A+ F KM +
Sbjct: 487 VFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIE 546
Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRY-----RSVQNCLISSYSK 400
DS++++ +LTA +E + F+A P Y + C++ +
Sbjct: 547 SGLQP-DSVSILGVLTACSHCGFVEQGTEY----FQAMSPIYGITPKKKHYACMLDLLGR 601
Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
G A + +EM F D + W++++ ++ + A K+ ++ D++ Y+S
Sbjct: 602 NGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVS 661
Query: 461 ILNACGHAG 469
+ N AG
Sbjct: 662 MSNIYAAAG 670
>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990
OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2
Length = 823
Score = 275 bits (702), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 183/612 (29%), Positives = 307/612 (50%), Gaps = 65/612 (10%)
Query: 8 SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS-G 66
S+KL++ Y G + A + FD I ++V +W+++I GY G + ++ FS MLS G
Sbjct: 89 SAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSG 148
Query: 67 LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--------------------- 105
L P+ T VL A + + IH L +KFG D
Sbjct: 149 LTPDYRTFPSVLKACRTVID---GNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNAR 205
Query: 106 -LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
LF+ + + S NA+++G+ + ++A+ L N R ++VT+++++ C G
Sbjct: 206 ILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAM----DSVTVVSLLSACTEAG 261
Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
IH +IK GL ++ V+N ++D+Y+ L ++F M +D+ISW ++
Sbjct: 262 DFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIK 321
Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG-LQ 283
+ E A+ +F+EMR SRI D + L++L S+ + LGD++ + + + G
Sbjct: 322 AYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFL 381
Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
++ + N+++ MY+K G +DS+R+VFN + ++SW IISGY QNG A EA+ + M
Sbjct: 382 EDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIM 441
Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
+E + + T VS+L A + AL ++LHG + G V L Y KCG
Sbjct: 442 EEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGR 501
Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
++ A +F ++ + + V WNT+I +G +GHGE A+ L+ +M + G PD T++++L+
Sbjct: 502 LEDALSLFYQIPRV-NSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLS 560
Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
AC H+GL ++G F M + + PS +HYGC+VD+ RAG L A +
Sbjct: 561 ACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDA 620
Query: 524 NIWRALLSGCVLH---------------------------------VGRFQDAEALRSGS 550
+IW ALLS C +H G+++ + +RS +
Sbjct: 621 SIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIA 680
Query: 551 QKKGIIKIPGIS 562
KG+ K PG S
Sbjct: 681 HGKGLRKTPGWS 692
Score = 109 bits (272), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 83/311 (26%), Positives = 160/311 (51%), Gaps = 19/311 (6%)
Query: 155 TVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
T+ R C L S A C +H + I +V ++ ++++Y L ++ A F ++ +
Sbjct: 59 TLFRYCTNLQS-AKC--LHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNR 115
Query: 215 DVISWTRMMGLFVDFEYAGDALKIFR----EMRKSRIICDTVALLNLISVNAILGDLKRG 270
DV +W M+ + AG++ ++ R M S + D +++ + D G
Sbjct: 116 DVYAWNLMIS---GYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVID---G 169
Query: 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
++H + G ++ ++ S+I +YS+ + ++R +F+++ + + SW A+ISGY Q+
Sbjct: 170 NKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQS 229
Query: 331 GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV 390
G A+EAL +R ++DS+T+VS+L+A E + +H + + G V
Sbjct: 230 GNAKEALTLSNGLR-----AMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFV 284
Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
N LI Y++ G + VF+ M ++RD++SWN+II Y +N A++L+ +M +
Sbjct: 285 SNKLIDLYAEFGRLRDCQKVFDRM-YVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSR 343
Query: 451 EVPDSSTYLSI 461
PD T +S+
Sbjct: 344 IQPDCLTLISL 354
Score = 87.0 bits (214), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 127/255 (49%), Gaps = 15/255 (5%)
Query: 266 DLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIIS 325
+L+ K LHA++V+ + +S ++ +Y G++ +R F+ I + + +W +IS
Sbjct: 66 NLQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMIS 125
Query: 326 GYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFP 385
GY + G + E + F + D T S+L A + ++H +A + GF
Sbjct: 126 GYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVIDGN---KIHCLALKFGFM 182
Query: 386 RYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHK 445
V LI YS+ V A I+F+EM +RD+ SWN +I GY +G+ + AL L +
Sbjct: 183 WDVYVAASLIHLYSRYKAVGNARILFDEMP-VRDMGSWNAMISGYCQSGNAKEALTLSNG 241
Query: 446 MTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIE---ENKVKPSQEHYGCVVDLLA 502
+ DS T +S+L+AC AG N G+ I + I+ E+++ S + ++DL A
Sbjct: 242 L----RAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNK----LIDLYA 293
Query: 503 RAGCLSDASGLAGKL 517
G L D + ++
Sbjct: 294 EFGRLRDCQKVFDRM 308
Score = 49.7 bits (117), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%)
Query: 3 IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
+D + + L Y K G++++A +LF +IP N V W+ +I + +G EK++ F M
Sbjct: 484 LDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEM 543
Query: 63 MLSGLLPNSFTMVGVLVAAA 82
+ G+ P+ T V +L A +
Sbjct: 544 LDEGVKPDHITFVTLLSACS 563
>sp|Q9M9E2|PPR45_ARATH Pentatricopeptide repeat-containing protein At1g15510,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=2
SV=1
Length = 866
Score = 272 bits (696), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 169/551 (30%), Positives = 290/551 (52%), Gaps = 32/551 (5%)
Query: 11 LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM-LSGLLP 69
L+ + + G + +A +F ++ E+N+ SW++++ GY+ G+ +++M + M+ + G+ P
Sbjct: 135 FLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKP 194
Query: 70 NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LF 107
+ +T VL G+ +L + +H +V++G E D LF
Sbjct: 195 DVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLF 254
Query: 108 EGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRA 167
+ + ++S NA+++G+ N + + + LF RG + P+ +T+ +VI C LG R
Sbjct: 255 DRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRR 314
Query: 168 LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV 227
L IH I G +D+SV NS+ MY A ++F ME KD++SWT M+ +
Sbjct: 315 LGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGY- 373
Query: 228 DFEYAGD-ALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
++ + D A+ +R M + + D + + ++S A LGDL G +LH + L S +
Sbjct: 374 EYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYV 433
Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
++N++I MYSKC +D + +F+ I K+++SWT+II+G N EAL I +RQ
Sbjct: 434 IVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEAL---IFLRQM 490
Query: 347 K-TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
K T ++ITL + L A + AL ++H G + N L+ Y +CG ++
Sbjct: 491 KMTLQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMN 550
Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
A+ F +DV SWN ++ GY G G + L+ +M ++ PD T++S+L C
Sbjct: 551 TAWSQFNSQK--KDVTSWNILLTGYSERGQGSMVVELFDRMVKSRVRPDEITFISLLCGC 608
Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI 525
+ + GL+ F++M E+ V P+ +HY CVVDLL RAG L +A K+ P +
Sbjct: 609 SKSQMVRQGLMYFSKM-EDYGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPAV 667
Query: 526 WRALLSGCVLH 536
W ALL+ C +H
Sbjct: 668 WGALLNACRIH 678
Score = 171 bits (434), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 119/430 (27%), Positives = 209/430 (48%), Gaps = 25/430 (5%)
Query: 43 IHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVL-----------------VAAAGLQ 85
+HG NG E++MK + M + + V ++ +A + +
Sbjct: 66 LHGLCANGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMS 125
Query: 86 NL--ELARSIHGLMVKFGLESD---LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFN- 139
+L EL + + V+FG D +F + L S N +V G+ F +A+ L++
Sbjct: 126 SLGVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHR 185
Query: 140 FFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLM 199
G+ P+ T V+R C + A + +H ++ G LD+ V N+++ MY
Sbjct: 186 MLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCG 245
Query: 200 DLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLIS 259
D+ +A +F M +D+ISW M+ + + + L++F MR + D + L ++IS
Sbjct: 246 DVKSARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVIS 305
Query: 260 VNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVS 319
+LGD + G+ +HA V+ G ++ + NS+ MY G + +F+++ K +VS
Sbjct: 306 ACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVS 365
Query: 320 WTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIA 379
WT +ISGY N +A++ + M Q+ D IT+ ++L+A L L+ ++LH +A
Sbjct: 366 WTTMISGYEYNFLPDKAIDTYRMMDQDSVKP-DEITVAAVLSACATLGDLDTGVELHKLA 424
Query: 380 FEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETA 439
+A Y V N LI+ YSKC +D A +F + ++V+SW +II G +N A
Sbjct: 425 IKARLISYVIVANNLINMYSKCKCIDKALDIFHNIP-RKNVISWTSIIAGLRLNNRCFEA 483
Query: 440 LALYHKMTET 449
L +M T
Sbjct: 484 LIFLRQMKMT 493
Score = 153 bits (386), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 130/531 (24%), Positives = 238/531 (44%), Gaps = 52/531 (9%)
Query: 3 IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
ID N+ L++ Y K G +K A LFD +P ++++SW+ +I GY NG + ++ F M
Sbjct: 231 IDVVNA--LITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAM 288
Query: 63 MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
+ P+ T+ V+ A L + L R IH ++ G D
Sbjct: 289 RGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSW 348
Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
LF ++ +VS +++G+ N L +A+ + + P+ +T+ V+ C
Sbjct: 349 REAEKLFSRMERKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSAC 408
Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
LG +H L IK LI V V N++++MYS +D A+ IF + K+VISWT
Sbjct: 409 ATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWT 468
Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
++ +AL R+M+ + + + + L ++ A +G L GK++HA V+
Sbjct: 469 SIIAGLRLNNRCFEALIFLRQMKMT-LQPNAITLTAALAACARIGALMCGKEIHAHVLRT 527
Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
G+ + L N+++ MY +CG ++++ S FN +K + SW +++GY + G + F
Sbjct: 528 GVGLDDFLPNALLDMYVRCGRMNTAWSQFNS-QKKDVTSWNILLTGYSERGQGSMVVELF 586
Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN-----CLI 395
+M + + D IT +S+L + + G+ + + Y N C++
Sbjct: 587 DRMVKSRVRP-DEITFISLLCGCSKSQMVR-----QGLMYFSKMEDYGVTPNLKHYACVV 640
Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
+ G + A+ ++M D W ++ A ++HK+ + GE+
Sbjct: 641 DLLGRAGELQEAHKFIQKMPVTPDPAVWGALL----------NACRIHHKI-DLGELSAQ 689
Query: 456 STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGC 506
+ + G+ L + + E KV+ + G VD AGC
Sbjct: 690 HIFELDKKSVGYYILLCNLYADCGKWREVAKVRRMMKENGLTVD----AGC 736
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 270 bits (689), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 176/635 (27%), Positives = 301/635 (47%), Gaps = 125/635 (19%)
Query: 9 SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
++L+ Y K G +++ +FD++P++N+ +W+ V+ G + GF +++
Sbjct: 59 NRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEA------------- 105
Query: 69 PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINN 128
LF + + N++V+GF +
Sbjct: 106 -----------------------------------DSLFRSMPERDQCTWNSMVSGFAQH 130
Query: 129 KLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVN 188
++A+ F G V N + +V+ C L +H L K + DV +
Sbjct: 131 DRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIG 190
Query: 189 NSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRII 248
++++DMYS +++ A ++F EM ++V+SW ++ F A +AL +F+ M +SR+
Sbjct: 191 SALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVE 250
Query: 249 CDTVALLNLISVNAILGDLKRGKQLHAQVVLGG-LQSELRLSNSIIAMYSKCGDLDSSRS 307
D V L ++IS A L +K G+++H +VV L++++ LSN+ + MY+KC + +R
Sbjct: 251 PDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARF 310
Query: 308 VFN-------------------------------QITEKSLVSWTAIISGYVQNGCAREA 336
+F+ ++ E+++VSW A+I+GY QNG EA
Sbjct: 311 IFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEA 370
Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQL------HGIAFEAGFPRYRSV 390
L+ F +++E + +IL A +LA L + +Q HG F++G V
Sbjct: 371 LSLFCLLKRESV-CPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFV 429
Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
N LI Y KCG V+ Y+VF +M RD VSWN +I G+ NG+G AL L+ +M E+G
Sbjct: 430 GNSLIDMYVKCGCVEEGYLVFRKM-MERDCVSWNAMIIGFAQNGYGNEALELFREMLESG 488
Query: 451 EVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
E PD T + +L+ACGHAG +G F+ M + V P ++HY C+VDLL RAG L +A
Sbjct: 489 EKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEA 548
Query: 511 SGLAGKLLEGMGPN--IWRALLSGCVLH-------------------------------- 536
+ ++ M P+ IW +LL+ C +H
Sbjct: 549 KSMIEEM--PMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYA 606
Query: 537 -VGRFQDAEALRSGSQKKGIIKIPGISFLNSTSRD 570
+G+++D +R +K+G+ K PG S++ D
Sbjct: 607 ELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHD 641
Score = 156 bits (394), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 130/551 (23%), Positives = 243/551 (44%), Gaps = 67/551 (12%)
Query: 1 PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
P + Y + +++ K G + EA++LF +PE++ +W+ ++ G++ + E+++ F+
Sbjct: 82 PQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFA 141
Query: 61 HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--------------- 105
M G + N ++ VL A +GL ++ +H L+ K SD
Sbjct: 142 MMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCG 201
Query: 106 -------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
+F+ + + +VS N+++ F N +A+ +F S + P+ VT+ +VI
Sbjct: 202 NVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVIS 261
Query: 159 GCVALGSRALCELIHGLTIKLG-LILDVSVNNSVLDM----------------------- 194
C +L + + + +HG +K L D+ ++N+ +DM
Sbjct: 262 ACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVI 321
Query: 195 --------YSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSR 246
Y+ AA +F +M ++V+SW ++ + +AL +F +++
Sbjct: 322 AETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRES 381
Query: 247 IICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL------QSELRLSNSIIAMYSKCG 300
+ + N++ A L +L G Q H V+ G + ++ + NS+I MY KCG
Sbjct: 382 VCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCG 441
Query: 301 DLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSIL 360
++ VF ++ E+ VSW A+I G+ QNG EAL F +M E + D IT++ +L
Sbjct: 442 CVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREML-ESGEKPDHITMIGVL 500
Query: 361 TASGELAALEICLQ-LHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRD 419
+A G +E + + G R C++ + G ++ A + EEM D
Sbjct: 501 SACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPD 560
Query: 420 VVSWNTIIYGYGVNGHGETALALY--HKMTETGEVPDSSTYLSILNACGHAGLTNDGLVI 477
V W +++ V H L Y K+ E E +S Y+ + N G D + +
Sbjct: 561 SVIWGSLLAACKV--HRNITLGKYVAEKLLEV-EPSNSGPYVLLSNMYAELGKWEDVMNV 617
Query: 478 FNQMIEENKVK 488
M +E K
Sbjct: 618 RKSMRKEGVTK 628
Score = 145 bits (367), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 116/486 (23%), Positives = 218/486 (44%), Gaps = 88/486 (18%)
Query: 172 IHGLTIKLGLILDVSVNNSVLDMYS---CLMD---------------------------- 200
+H IK G ++ + N ++D YS L D
Sbjct: 42 VHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGF 101
Query: 201 LDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISV 260
LD A +FR M +D +W M+ F + +AL F M K + + + +++S
Sbjct: 102 LDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSA 161
Query: 261 NAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSW 320
+ L D+ +G Q+H+ + S++ + ++++ MYSKCG+++ ++ VF+++ ++++VSW
Sbjct: 162 CSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSW 221
Query: 321 TAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAF 380
++I+ + QNG A EAL+ F M + + + D +TL S+++A L+A+++ ++HG
Sbjct: 222 NSLITCFEQNGPAVEALDVFQMMLESRVEP-DEVTLASVISACASLSAIKVGQEVHGRVV 280
Query: 381 EAGFPRYRSV-QNCLISSYSKCGNVDLAYIVFEEM-------------GFL--------- 417
+ R + N + Y+KC + A +F+ M G+
Sbjct: 281 KNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAAR 340
Query: 418 --------RDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAG 469
R+VVSWN +I GY NG E AL+L+ + P ++ +IL AC
Sbjct: 341 LMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLA 400
Query: 470 LTNDGLVIFNQMIEEN-KVKPSQEHY----GCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
+ G+ +++ K + +E ++D+ + GC+ + + K++E +
Sbjct: 401 ELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVS 460
Query: 525 IWRALLSGCVLHVGRFQDA-----EALRSGSQKKGIIKI-------------PGISFLNS 566
W A++ G + G +A E L SG + I I G + +S
Sbjct: 461 -WNAMIIGFAQN-GYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSS 518
Query: 567 TSRDFG 572
+RDFG
Sbjct: 519 MTRDFG 524
Score = 113 bits (282), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 132/271 (48%), Gaps = 33/271 (12%)
Query: 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAI------- 323
+ +HA V+ G +E+ + N +I YSKCG L+ R VF+++ ++++ +W ++
Sbjct: 40 RYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKL 99
Query: 324 ------------------------ISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSI 359
+SG+ Q+ EAL F M +E ++ + S+
Sbjct: 100 GFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGF-VLNEYSFASV 158
Query: 360 LTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRD 419
L+A L + +Q+H + ++ F + + L+ YSKCGNV+ A VF+EMG R+
Sbjct: 159 LSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMG-DRN 217
Query: 420 VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFN 479
VVSWN++I + NG AL ++ M E+ PD T S+++AC G +
Sbjct: 218 VVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHG 277
Query: 480 QMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
++++ +K++ VD+ A+ + +A
Sbjct: 278 RVVKNDKLRNDIILSNAFVDMYAKCSRIKEA 308
>sp|Q9LUS3|PP237_ARATH Pentatricopeptide repeat-containing protein At3g16610
OS=Arabidopsis thaliana GN=PCMP-E91 PE=2 SV=1
Length = 654
Score = 268 bits (686), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 186/627 (29%), Positives = 315/627 (50%), Gaps = 74/627 (11%)
Query: 7 NSSKLLSN----YFKSGKIKEAENLFDEIPEK--NVVSWSIVIHGYSINGFHEKSMKAFS 60
+SS +L N Y +++ A ++FDEIP N ++W ++I Y+ N F EK++ +
Sbjct: 33 SSSTVLVNLTRLYASCNEVELARHVFDEIPHPRINPIAWDLMIRAYASNDFAEKALDLYY 92
Query: 61 HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL-------------- 106
M+ SG+ P +T VL A AGL+ ++ + IH + +D+
Sbjct: 93 KMLNSGVRPTKYTYPFVLKACAGLRAIDDGKLIHSHVNCSDFATDMYVCTALVDFYAKCG 152
Query: 107 --------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLF-NFFRGSGLVPNAVTMLTVI 157
F+ + +V+ NA+++GF + + LF + R GL PN T++ +
Sbjct: 153 ELEMAIKVFDEMPKRDMVAWNAMISGFSLHCCLTDVIGLFLDMRRIDGLSPNLSTIVGMF 212
Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
G+ + +HG ++G D+ V +LD+Y+ + A ++F K+ +
Sbjct: 213 PALGRAGALREGKAVHGYCTRMGFSNDLVVKTGILDVYAKSKCIIYARRVFDLDFKKNEV 272
Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAIL------GDLKRGK 271
+W+ M+G +V+ E +A ++F +M ++ D VA++ +++ IL GDL G+
Sbjct: 273 TWSAMIGGYVENEMIKEAGEVFFQM----LVNDNVAMVTPVAIGLILMGCARFGDLSGGR 328
Query: 272 QLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNG 331
+H V G +L + N+II+ Y+K G L + F++I K ++S+ ++I+G V N
Sbjct: 329 CVHCYAVKAGFILDLTVQNTIISFYAKYGSLCDAFRQFSEIGLKDVISYNSLITGCVVNC 388
Query: 332 CAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ 391
E+ F +MR D TL+ +LTA LAAL HG G+ S+
Sbjct: 389 RPEESFRLFHEMRTSGIRP-DITTLLGVLTACSHLAALGHGSSCHGYCVVHGYAVNTSIC 447
Query: 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE 451
N L+ Y+KCG +D+A VF+ M RD+VSWNT+++G+G++G G+ AL+L++ M ETG
Sbjct: 448 NALMDMYTKCGKLDVAKRVFDTM-HKRDIVSWNTMLFGFGIHGLGKEALSLFNSMQETGV 506
Query: 452 VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEEN-KVKPSQEHYGCVVDLLARAGCLSDA 510
PD T L+IL+AC H+GL ++G +FN M + V P +HY C+ DLLARAG L +A
Sbjct: 507 NPDEVTLLAILSACSHSGLVDEGKQLFNSMSRGDFNVIPRIDHYNCMTDLLARAGYLDEA 566
Query: 511 SGLAGKLLEGMGPNIWRALLSGCVLH--------------------------------VG 538
K+ + LLS C +
Sbjct: 567 YDFVNKMPFEPDIRVLGTLLSACWTYKNAELGNEVSKKMQSLGETTESLVLLSNTYSAAE 626
Query: 539 RFQDAEALRSGSQKKGIIKIPGISFLN 565
R++DA +R +K+G++K PG S+++
Sbjct: 627 RWEDAARIRMIQKKRGLLKTPGYSWVD 653
Score = 178 bits (452), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 133/489 (27%), Positives = 235/489 (48%), Gaps = 38/489 (7%)
Query: 4 DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM- 62
D Y + L+ Y K G+++ A +FDE+P++++V+W+ +I G+S++ + F M
Sbjct: 137 DMYVCTALVDFYAKCGELEMAIKVFDEMPKRDMVAWNAMISGFSLHCCLTDVIGLFLDMR 196
Query: 63 MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPYL----- 115
+ GL PN T+VG+ A L +++HG + G +DL G+ + Y
Sbjct: 197 RIDGLSPNLSTIVGMFPALGRAGALREGKAVHGYCTRMGFSNDLVVKTGILDVYAKSKCI 256
Query: 116 ---------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLT----- 155
V+ +A++ G++ N++ ++A +F LV + V M+T
Sbjct: 257 IYARRVFDLDFKKNEVTWSAMIGGYVENEMIKEAGEVF----FQMLVNDNVAMVTPVAIG 312
Query: 156 -VIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
++ GC G + +H +K G ILD++V N+++ Y+ L A + F E+ K
Sbjct: 313 LILMGCARFGDLSGGRCVHCYAVKAGFILDLTVQNTIISFYAKYGSLCDAFRQFSEIGLK 372
Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
DVIS+ ++ V ++ ++F EMR S I D LL +++ + L L G H
Sbjct: 373 DVISYNSLITGCVVNCRPEESFRLFHEMRTSGIRPDITTLLGVLTACSHLAALGHGSSCH 432
Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
V+ G + N+++ MY+KCG LD ++ VF+ + ++ +VSW ++ G+ +G +
Sbjct: 433 GYCVVHGYAVNTSICNALMDMYTKCGKLDVAKRVFDTMHKRDIVSWNTMLFGFGIHGLGK 492
Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGF---PRYRSVQ 391
EAL+ F M QE + D +TL++IL+A ++ QL F PR
Sbjct: 493 EALSLFNSM-QETGVNPDEVTLLAILSACSHSGLVDEGKQLFNSMSRGDFNVIPRIDH-Y 550
Query: 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE 451
NC+ ++ G +D AY +M F D+ T++ + E + KM GE
Sbjct: 551 NCMTDLLARAGYLDEAYDFVNKMPFEPDIRVLGTLLSACWTYKNAELGNEVSKKMQSLGE 610
Query: 452 VPDSSTYLS 460
+S LS
Sbjct: 611 TTESLVLLS 619
>sp|Q9LFI1|PP280_ARATH Pentatricopeptide repeat-containing protein At3g53360,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E86 PE=2
SV=1
Length = 768
Score = 268 bits (686), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 181/618 (29%), Positives = 310/618 (50%), Gaps = 59/618 (9%)
Query: 4 DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
D ++ +LS Y K G +++A +FD +PE+N+VS++ VI GYS NG ++++ + M+
Sbjct: 101 DTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIRLYLKML 160
Query: 64 LSGLLPNSFTMVGVLVAAAGLQNLELARSIHG-------------------LMVKFGLES 104
L+P+ F ++ A A ++ L + +H + V+F S
Sbjct: 161 QEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMS 220
Query: 105 D---LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLV-PNAVTMLTVIRGC 160
D +F G+ L+S ++I+AGF +A+ G+ PN + ++ C
Sbjct: 221 DASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKAC 280
Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
+L IHGL IK L + S+ DMY+ L++A ++F ++E D SW
Sbjct: 281 SSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIERPDTASWN 340
Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
++ + YA +A+ +F +MR S I D ++L +L+ L +G Q+H+ ++
Sbjct: 341 VIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGMQIHSYIIKW 400
Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKS-LVSWTAIISGYVQNGCAREALNQ 339
G ++L + NS++ MY+ C DL ++F + VSW I++ +Q+ E L
Sbjct: 401 GFLADLTVCNSLLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTILTACLQHEQPVEMLRL 460
Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
F M + + D IT+ ++L E+++L++ Q+H + + G + ++N LI Y+
Sbjct: 461 FKLMLVSECEP-DHITMGNLLRGCVEISSLKLGSQVHCYSLKTGLAPEQFIKNGLIDMYA 519
Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
KCG++ A +F+ M RDVVSW+T+I GY +G GE AL L+ +M G P+ T++
Sbjct: 520 KCGSLGQARRIFDSMDN-RDVVSWSTLIVGYAQSGFGEEALILFKEMKSAGIEPNHVTFV 578
Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519
+L AC H GL +GL ++ M E+ + P++EH CVVDLLARAG L++A ++
Sbjct: 579 GVLTACSHVGLVEEGLKLYATMQTEHGISPTKEHCSCVVDLLARAGRLNEAERFIDEMKL 638
Query: 520 GMGPNIWRALLSGC------------------------VLHV---------GRFQDAEAL 546
+W+ LLS C HV G +++A L
Sbjct: 639 EPDVVVWKTLLSACKTQGNVHLAQKAAENILKIDPFNSTAHVLLCSMHASSGNWENAALL 698
Query: 547 RSGSQKKGIIKIPGISFL 564
RS +K + KIPG S++
Sbjct: 699 RSSMKKHDVKKIPGQSWI 716
Score = 130 bits (328), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 96/366 (26%), Positives = 176/366 (48%), Gaps = 2/366 (0%)
Query: 119 NAIVAGFINNKLFQQAVLLFNFF-RGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTI 177
N + + +++A+ F+F + S T +++I C + S A IH +
Sbjct: 35 NDHINSLCKSNFYREALEAFDFAQKNSSFKIRLRTYISLICACSSSRSLAQGRKIHDHIL 94
Query: 178 KLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALK 237
D +NN +L MY L A ++F M ++++S+T ++ + +A++
Sbjct: 95 NSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIR 154
Query: 238 IFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYS 297
++ +M + ++ D A ++I A D+ GKQLHAQV+ S L N++IAMY
Sbjct: 155 LYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYV 214
Query: 298 KCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLV 357
+ + + VF I K L+SW++II+G+ Q G EAL+ +M +
Sbjct: 215 RFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFG 274
Query: 358 SILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFL 417
S L A L + Q+HG+ ++ L Y++CG ++ A VF+++
Sbjct: 275 SSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIE-R 333
Query: 418 RDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVI 477
D SWN II G NG+ + A++++ +M +G +PD+ + S+L A + G+ I
Sbjct: 334 PDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGMQI 393
Query: 478 FNQMIE 483
+ +I+
Sbjct: 394 HSYIIK 399
>sp|Q9STS9|PP268_ARATH Putative pentatricopeptide repeat-containing protein At3g47840
OS=Arabidopsis thaliana GN=PCMP-E43 PE=3 SV=1
Length = 706
Score = 268 bits (685), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 174/614 (28%), Positives = 292/614 (47%), Gaps = 59/614 (9%)
Query: 6 YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMML- 64
++ + L + +G ++ A +FD++P ++VSW+ +I Y ++++ FS M +
Sbjct: 41 FDPNSHLRSLINAGNLRAARQVFDKMPHGDIVSWTSIIKRYVTANNSDEALILFSAMRVV 100
Query: 65 -SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGL------------- 110
+ P++ + VL A N+ S+H VK L S ++ G
Sbjct: 101 DHAVSPDTSVLSVVLKACGQSSNIAYGESLHAYAVKTSLLSSVYVGSSLLDMYKRVGKID 160
Query: 111 -------KNPY--LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
+ P+ V+ AI+ G ++ +++ + F+ S + + T ++ C
Sbjct: 161 KSCRVFSEMPFRNAVTWTAIITGLVHAGRYKEGLTYFSEMSRSEELSDTYTFAIALKACA 220
Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
L + IH I G + + V NS+ MY+ ++ + +F M +DV+SWT
Sbjct: 221 GLRQVKYGKAIHTHVIVRGFVTTLCVANSLATMYTECGEMQDGLCLFENMSERDVVSWTS 280
Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
++ + A++ F +MR S++ + ++ S A L L G+QLH V+ G
Sbjct: 281 LIVAYKRIGQEVKAVETFIKMRNSQVPPNEQTFASMFSACASLSRLVWGEQLHCNVLSLG 340
Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
L L +SNS++ MYS CG+L S+ +F + + ++SW+ II GY Q G E F
Sbjct: 341 LNDSLSVSNSMMKMYSTCGNLVSASVLFQGMRCRDIISWSTIIGGYCQAGFGEEGFKYFS 400
Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
MRQ T D L S+L+ SG +A +E Q+H +A G + +V++ LI+ YSKC
Sbjct: 401 WMRQSGTKPTD-FALASLLSVSGNMAVIEGGRQVHALALCFGLEQNSTVRSSLINMYSKC 459
Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
G++ A ++F E D+VS +I GY +G + A+ L+ K + G PDS T++S+
Sbjct: 460 GSIKEASMIFGETD-RDDIVSLTAMINGYAEHGKSKEAIDLFEKSLKVGFRPDSVTFISV 518
Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
L AC H+G + G FN M E ++P++EHYGC+VDLL RAG LSDA + ++
Sbjct: 519 LTACTHSGQLDLGFHYFNMMQETYNMRPAKEHYGCMVDLLCRAGRLSDAEKMINEMSWKK 578
Query: 522 GPNIWRALLSGCVLH---------------------------------VGRFQDAEALRS 548
+W LL C G ++A +R
Sbjct: 579 DDVVWTTLLIACKAKGDIERGRRAAERILELDPTCATALVTLANIYSSTGNLEEAANVRK 638
Query: 549 GSQKKGIIKIPGIS 562
+ KG+IK PG S
Sbjct: 639 NMKAKGVIKEPGWS 652
>sp|Q9FLZ9|PP405_ARATH Pentatricopeptide repeat-containing protein At5g39350
OS=Arabidopsis thaliana GN=PCMP-E16 PE=2 SV=1
Length = 677
Score = 268 bits (685), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 179/614 (29%), Positives = 303/614 (49%), Gaps = 61/614 (9%)
Query: 9 SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL- 67
S L Y G I A LF+E+P+ +++S++IVI Y G + ++ F M+ G+
Sbjct: 53 STLSVTYALCGHITYARKLFEEMPQSSLLSYNIVIRMYVREGLYHDAISVFIRMVSEGVK 112
Query: 68 -LPNSFTMVGVLVAAAGLQNLELARSIHGLMVK-------------------FG---LES 104
+P+ +T V AA L++++L +HG +++ FG +
Sbjct: 113 CVPDGYTYPFVAKAAGELKSMKLGLVVHGRILRSWFGRDKYVQNALLAMYMNFGKVEMAR 172
Query: 105 DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
D+F+ +KN ++S N +++G+ N A+++F++ + + T+++++ C L
Sbjct: 173 DVFDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLK 232
Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
+ +H L + L + V N++++MY +D A +F ME +DVI+WT M+
Sbjct: 233 DLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFDRMERRDVITWTCMIN 292
Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
+ + +AL++ R M+ + + V + +L+SV + GK LH V + S
Sbjct: 293 GYTEDGDVENALELCRLMQFEGVRPNAVTIASLVSVCGDALKVNDGKCLHGWAVRQQVYS 352
Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
++ + S+I+MY+KC +D VF+ ++ W+AII+G VQN +AL F +MR
Sbjct: 353 DIIIETSLISMYAKCKRVDLCFRVFSGASKYHTGPWSAIIAGCVQNELVSDALGLFKRMR 412
Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
+E + + TL S+L A LA L + +H + GF L+ YSKCG +
Sbjct: 413 REDVEP-NIATLNSLLPAYAALADLRQAMNIHCYLTKTGFMSSLDAATGLVHVYSKCGTL 471
Query: 405 DLAYIVF---EEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
+ A+ +F +E +DVV W +I GYG++G G AL ++ +M +G P+ T+ S
Sbjct: 472 ESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNEITFTSA 531
Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
LNAC H+GL +GL +F M+E K HY C+VDLL RAG L +A L +
Sbjct: 532 LNACSHSGLVEEGLTLFRFMLEHYKTLARSNHYTCIVDLLGRAGRLDEAYNLITTIPFEP 591
Query: 522 GPNIWRALLSGCVLH---------------------------------VGRFQDAEALRS 548
+W ALL+ CV H +GR++D E +RS
Sbjct: 592 TSTVWGALLAACVTHENVQLGEMAANKLFELEPENTGNYVLLANIYAALGRWKDMEKVRS 651
Query: 549 GSQKKGIIKIPGIS 562
+ G+ K PG S
Sbjct: 652 MMENVGLRKKPGHS 665
Score = 160 bits (404), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 113/451 (25%), Positives = 208/451 (46%), Gaps = 28/451 (6%)
Query: 4 DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
D Y + LL+ Y GK++ A ++FD + ++V+SW+ +I GY NG+ ++ F M+
Sbjct: 151 DKYVQNALLAMYMNFGKVEMARDVFDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMV 210
Query: 64 LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLM--VKFGLESDLFEGLKNPYL------ 115
+ + T+V +L L++LE+ R++H L+ + G + ++ L N YL
Sbjct: 211 NESVDLDHATIVSMLPVCGHLKDLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMD 270
Query: 116 --------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
++ ++ G+ + + A+ L + G+ PNAVT+ +++ C
Sbjct: 271 EARFVFDRMERRDVITWTCMINGYTEDGDVENALELCRLMQFEGVRPNAVTIASLVSVCG 330
Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
+ +HG ++ + D+ + S++ MY+ +D ++F W+
Sbjct: 331 DALKVNDGKCLHGWAVRQQVYSDIIIETSLISMYAKCKRVDLCFRVFSGASKYHTGPWSA 390
Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
++ V E DAL +F+ MR+ + + L +L+ A L DL++ +H + G
Sbjct: 391 IIAGCVQNELVSDALGLFKRMRREDVEPNIATLNSLLPAYAALADLRQAMNIHCYLTKTG 450
Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE----KSLVSWTAIISGYVQNGCAREAL 337
S L + ++ +YSKCG L+S+ +FN I E K +V W A+ISGY +G AL
Sbjct: 451 FMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNAL 510
Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ-NCLIS 396
F++M + + + IT S L A +E L L E RS C++
Sbjct: 511 QVFMEMVRSGV-TPNEITFTSALNACSHSGLVEEGLTLFRFMLEHYKTLARSNHYTCIVD 569
Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
+ G +D AY + + F W ++
Sbjct: 570 LLGRAGRLDEAYNLITTIPFEPTSTVWGALL 600
Score = 122 bits (307), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 142/267 (53%), Gaps = 5/267 (1%)
Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISG 326
+ + K LH V+ GG S LS ++ Y+ CG + +R +F ++ + SL+S+ +I
Sbjct: 31 ISKTKALHCHVITGGRVSGHILS-TLSVTYALCGHITYARKLFEEMPQSSLLSYNIVIRM 89
Query: 327 YVQNGCAREALNQFIKMRQEKTDSV-DSITLVSILTASGELAALEICLQLHGIAFEAGFP 385
YV+ G +A++ FI+M E V D T + A+GEL ++++ L +HG + F
Sbjct: 90 YVREGLYHDAISVFIRMVSEGVKCVPDGYTYPFVAKAAGELKSMKLGLVVHGRILRSWFG 149
Query: 386 RYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHK 445
R + VQN L++ Y G V++A VF+ M RDV+SWNT+I GY NG+ AL ++
Sbjct: 150 RDKYVQNALLAMYMNFGKVEMARDVFDVMKN-RDVISWNTMISGYYRNGYMNDALMMFDW 208
Query: 446 MTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAG 505
M D +T +S+L CGH G + ++++EE ++ E +V++ + G
Sbjct: 209 MVNESVDLDHATIVSMLPVCGHLKDLEMGRNV-HKLVEEKRLGDKIEVKNALVNMYLKCG 267
Query: 506 CLSDASGLAGKLLEGMGPNIWRALLSG 532
+ +A + + +E W +++G
Sbjct: 268 RMDEARFVFDR-MERRDVITWTCMING 293
>sp|Q9SII7|PP159_ARATH Pentatricopeptide repeat-containing protein At2g17210
OS=Arabidopsis thaliana GN=PCMP-E77 PE=2 SV=2
Length = 736
Score = 267 bits (683), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 167/545 (30%), Positives = 288/545 (52%), Gaps = 34/545 (6%)
Query: 15 YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTM 74
Y K G + FD + ++ VSW++++ G GF E+ + FS + + G PN+ T+
Sbjct: 92 YMKCGDLCSGLREFDCMNSRDSVSWNVIVFGLLDYGFEEEGLWWFSKLRVWGFEPNTSTL 151
Query: 75 VGVLVAAAGLQNLELARSIHGLMVKFGL---------------ESD------LFEGLKNP 113
V V+ A L IHG +++ G +SD LF+ +
Sbjct: 152 VLVIHACRSLWFD--GEKIHGYVIRSGFCGISSVQNSILCMYADSDSLSARKLFDEMSER 209
Query: 114 YLVSCNAIVAGFINNKLFQQAVLLFN-FFRGSGLVPNAVTMLTVIRGCVALGSRALCELI 172
++S + ++ ++ +K + LF + P+ VT+ +V++ C + + +
Sbjct: 210 DVISWSVVIRSYVQSKEPVVGLKLFKEMVHEAKTEPDCVTVTSVLKACTVMEDIDVGRSV 269
Query: 173 HGLTIKLGLIL-DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
HG +I+ G L DV V NS++DMYS D+D+A ++F E C++++SW ++ FV +
Sbjct: 270 HGFSIRRGFDLADVFVCNSLIDMYSKGFDVDSAFRVFDETTCRNIVSWNSILAGFVHNQR 329
Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
+AL++F M + + D V +++L+ V K +H ++ G +S +S
Sbjct: 330 YDEALEMFHLMVQEAVEVDEVTVVSLLRVCKFFEQPLPCKSIHGVIIRRGYESNEVALSS 389
Query: 292 IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
+I Y+ C +D + +V + +T K +VS + +ISG G + EA++ F MR D+
Sbjct: 390 LIDAYTSCSLVDDAGTVLDSMTYKDVVSCSTMISGLAHAGRSDEAISIFCHMR----DTP 445
Query: 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFP-RYRSVQNCLISSYSKCGNVDLAYIV 410
++IT++S+L A A L HGIA SV ++ +Y+KCG +++A
Sbjct: 446 NAITVISLLNACSVSADLRTSKWAHGIAIRRSLAINDISVGTSIVDAYAKCGAIEMARRT 505
Query: 411 FEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGL 470
F+++ ++++SW II Y +NG + ALAL+ +M + G P++ TYL+ L+AC H GL
Sbjct: 506 FDQIT-EKNIISWTVIISAYAINGLPDKALALFDEMKQKGYTPNAVTYLAALSACNHGGL 564
Query: 471 TNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM--GPNIWRA 528
GL+IF M+EE+ KPS +HY C+VD+L+RAG + A L L E + G + W A
Sbjct: 565 VKKGLMIFKSMVEEDH-KPSLQHYSCIVDMLSRAGEIDTAVELIKNLPEDVKAGASAWGA 623
Query: 529 LLSGC 533
+LSGC
Sbjct: 624 ILSGC 628
Score = 129 bits (323), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 154/311 (49%), Gaps = 5/311 (1%)
Query: 156 VIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKD 215
V + C L I +K G VSV NS+ D Y DL + ++ F M +D
Sbjct: 53 VFKACAKLSWLFQGRCIQASLLKRGFESFVSVGNSIADFYMKCGDLCSGLREFDCMNSRD 112
Query: 216 VISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
+SW ++ +D+ + + L F ++R +T L ++ ++A G+++H
Sbjct: 113 SVSWNVIVFGLLDYGFEEEGLWWFSKLRVWGFEPNTSTL--VLVIHACRSLWFDGEKIHG 170
Query: 276 QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
V+ G + NSI+ MY+ L S+R +F++++E+ ++SW+ +I YVQ+
Sbjct: 171 YVIRSGFCGISSVQNSILCMYADSDSL-SARKLFDEMSERDVISWSVVIRSYVQSKEPVV 229
Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS-VQNCL 394
L F +M E D +T+ S+L A + +++ +HG + GF V N L
Sbjct: 230 GLKLFKEMVHEAKTEPDCVTVTSVLKACTVMEDIDVGRSVHGFSIRRGFDLADVFVCNSL 289
Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
I YSK +VD A+ VF+E R++VSWN+I+ G+ N + AL ++H M + D
Sbjct: 290 IDMYSKGFDVDSAFRVFDETT-CRNIVSWNSILAGFVHNQRYDEALEMFHLMVQEAVEVD 348
Query: 455 SSTYLSILNAC 465
T +S+L C
Sbjct: 349 EVTVVSLLRVC 359
Score = 112 bits (281), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 80/349 (22%), Positives = 167/349 (47%), Gaps = 29/349 (8%)
Query: 4 DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
D + + L+ Y K + A +FDE +N+VSW+ ++ G+ N ++++++ F M+
Sbjct: 282 DVFVCNSLIDMYSKGFDVDSAFRVFDETTCRNIVSWNSILAGFVHNQRYDEALEMFHLMV 341
Query: 64 LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
+ + T+V +L + +SIHG++++ G ES+
Sbjct: 342 QEAVEVDEVTVVSLLRVCKFFEQPLPCKSIHGVIIRRGYESNEVALSSLIDAYTSCSLVD 401
Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
+ + + +VSC+ +++G + +A+ +F R + PNA+T+++++ C
Sbjct: 402 DAGTVLDSMTYKDVVSCSTMISGLAHAGRSDEAISIFCHMRDT---PNAITVISLLNACS 458
Query: 162 ALGSRALCELIHGLTIKLGL-ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
+ HG+ I+ L I D+SV S++D Y+ ++ A + F ++ K++ISWT
Sbjct: 459 VSADLRTSKWAHGIAIRRSLAINDISVGTSIVDAYAKCGAIEMARRTFDQITEKNIISWT 518
Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
++ + AL +F EM++ + V L +S G +K+G + +V
Sbjct: 519 VIISAYAINGLPDKALALFDEMKQKGYTPNAVTYLAALSACNHGGLVKKGLMIFKSMVEE 578
Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK---SLVSWTAIISG 326
+ L+ + I+ M S+ G++D++ + + E +W AI+SG
Sbjct: 579 DHKPSLQHYSCIVDMLSRAGEIDTAVELIKNLPEDVKAGASAWGAILSG 627
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 1/136 (0%)
Query: 330 NGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS 389
+G RE ++ + ++++ D + A +L+ L + + GF + S
Sbjct: 24 SGKWREVVSGYSEIQRAGVQFNDPFVFPIVFKACAKLSWLFQGRCIQASLLKRGFESFVS 83
Query: 390 VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
V N + Y KCG++ F+ M RD VSWN I++G G E L + K+
Sbjct: 84 VGNSIADFYMKCGDLCSGLREFDCMN-SRDSVSWNVIVFGLLDYGFEEEGLWWFSKLRVW 142
Query: 450 GEVPDSSTYLSILNAC 465
G P++ST + +++AC
Sbjct: 143 GFEPNTSTLVLVIHAC 158
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 266 bits (681), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 154/491 (31%), Positives = 269/491 (54%), Gaps = 25/491 (5%)
Query: 52 HEKSMKAF-SHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGL 110
H+ +K + +++ GL + F + ++ A++ ++ AR + F+ L
Sbjct: 33 HKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQV-------------FDDL 79
Query: 111 KNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCE 170
P + NAI+ G+ N FQ A+L+++ + + + P++ T +++ C L +
Sbjct: 80 PRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGR 139
Query: 171 LIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFR--EMECKDVISWTRMMGLFVD 228
+H +LG DV V N ++ +Y+ L +A +F + + ++SWT ++ +
Sbjct: 140 FVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQ 199
Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
+AL+IF +MRK + D VAL+++++ L DLK+G+ +HA VV GL+ E L
Sbjct: 200 NGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDL 259
Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
S+ MY+KCG + +++ +F+++ +L+ W A+ISGY +NG AREA++ F +M K
Sbjct: 260 LISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEM-INKD 318
Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS---VQNCLISSYSKCGNVD 405
D+I++ S ++A ++ +LE Q + G YR + + LI ++KCG+V+
Sbjct: 319 VRPDTISITSAISACAQVGSLE---QARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVE 375
Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
A +VF+ RDVV W+ +I GYG++G A++LY M G P+ T+L +L AC
Sbjct: 376 GARLVFDRT-LDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMAC 434
Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI 525
H+G+ +G FN+M ++K+ P Q+HY CV+DLL RAG L A + + G +
Sbjct: 435 NHSGMVREGWWFFNRM-ADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTV 493
Query: 526 WRALLSGCVLH 536
W ALLS C H
Sbjct: 494 WGALLSACKKH 504
Score = 172 bits (437), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 113/453 (24%), Positives = 220/453 (48%), Gaps = 25/453 (5%)
Query: 9 SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
+KL+ G I A +FD++P + W+ +I GYS N + ++ +S+M L+ +
Sbjct: 57 TKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVS 116
Query: 69 PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--------------------- 107
P+SFT +L A +GL +L++ R +H + + G ++D+F
Sbjct: 117 PDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTV 176
Query: 108 -EGLKNP--YLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
EGL P +VS AIV+ + N +A+ +F+ R + P+ V +++V+ L
Sbjct: 177 FEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQ 236
Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
IH +K+GL ++ + S+ MY+ + A +F +M+ ++I W M+
Sbjct: 237 DLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMIS 296
Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
+ YA +A+ +F EM + DT+++ + IS A +G L++ + ++ V +
Sbjct: 297 GYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRD 356
Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
++ +S+++I M++KCG ++ +R VF++ ++ +V W+A+I GY +G AREA++ + M
Sbjct: 357 DVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAME 416
Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
+ D +T + +L A + + + C+I + G++
Sbjct: 417 RGGVHPND-VTFLGLLMACNHSGMVREGWWFFNRMADHKINPQQQHYACVIDLLGRAGHL 475
Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGE 437
D AY V + M V W ++ + H E
Sbjct: 476 DQAYEVIKCMPVQPGVTVWGALLSACKKHRHVE 508
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 107/392 (27%), Positives = 197/392 (50%), Gaps = 7/392 (1%)
Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
+A + IH + LGL + ++ S D+ A Q+F ++ + W ++
Sbjct: 34 KAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRG 93
Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
+ + DAL ++ M+ +R+ D+ +L+ + L L+ G+ +HAQV G ++
Sbjct: 94 YSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDAD 153
Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFN--QITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
+ + N +IA+Y+KC L S+R+VF + E+++VSWTAI+S Y QNG EAL F +M
Sbjct: 154 VFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQM 213
Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
R+ D + LVS+L A L L+ +H + G + L + Y+KCG
Sbjct: 214 RKMDVKP-DWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQ 272
Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
V A I+F++M +++ WN +I GY NG+ A+ ++H+M PD+ + S ++
Sbjct: 273 VATAKILFDKMK-SPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAIS 331
Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
AC G ++ + + + + ++D+ A+ G + A + + L+
Sbjct: 332 ACAQVGSLEQARSMY-EYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLD-RDV 389
Query: 524 NIWRALLSGCVLHVGRFQDAEALRSGSQKKGI 555
+W A++ G LH GR ++A +L ++ G+
Sbjct: 390 VVWSAMIVGYGLH-GRAREAISLYRAMERGGV 420
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 88/180 (48%), Gaps = 22/180 (12%)
Query: 3 IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
I+P L + Y K G++ A+ LFD++ N++ W+ +I GY+ NG+ +++ F M
Sbjct: 255 IEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEM 314
Query: 63 MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--------------- 107
+ + P++ ++ + A A + +LE ARS++ + + D+F
Sbjct: 315 INKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSV 374
Query: 108 EGLK-------NPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
EG + + +V +A++ G+ + ++A+ L+ G+ PN VT L ++ C
Sbjct: 375 EGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMAC 434
>sp|P93005|PP181_ARATH Pentatricopeptide repeat-containing protein At2g33680
OS=Arabidopsis thaliana GN=PCMP-E19 PE=3 SV=1
Length = 727
Score = 265 bits (676), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 182/569 (31%), Positives = 296/569 (52%), Gaps = 45/569 (7%)
Query: 2 CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKS---MKA 58
CI N L++ Y K GK+ +A ++F+ I K+VVSW+ +I GYS NG S M+
Sbjct: 48 CIQHANV--LVNFYAKCGKLAKAHSIFNAIICKDVVSWNSLITGYSQNGGISSSYTVMQL 105
Query: 59 FSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF----------- 107
F M +LPN++T+ G+ A + LQ+ + R H L+VK D++
Sbjct: 106 FREMRAQDILPNAYTLAGIFKAESSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCK 165
Query: 108 -----EGLK--------NPYLVSCNAIVAGFINNKLFQQAVLLFNFF-----RGSGLVPN 149
+GLK N Y S +V+G+ ++A+ +FN F GS
Sbjct: 166 AGLVEDGLKVFAYMPERNTYTWS--TMVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYV 223
Query: 150 AVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFR 209
+L+ + + +G L IH +TIK GL+ V+++N+++ MYS L+ A ++F
Sbjct: 224 FTAVLSSLAATIYVG---LGRQIHCITIKNGLLGFVALSNALVTMYSKCESLNEACKMFD 280
Query: 210 EMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKR 269
++ I+W+ M+ + + +A+K+F M + I ++ +++ + + L+
Sbjct: 281 SSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEE 340
Query: 270 GKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQ 329
GKQLH+ ++ G + L + +++ MY+K G L +R F+ + E+ + WT++ISGYVQ
Sbjct: 341 GKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQ 400
Query: 330 NGCAREALNQFIKMRQEKTDSV--DSITLVSILTASGELAALEICLQLHGIAFEAGFPRY 387
N EAL I R+ KT + + T+ S+L A LA LE+ Q+HG + GF
Sbjct: 401 NSDNEEAL---ILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLE 457
Query: 388 RSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMT 447
+ + L + YSKCG+++ +VF +DVVSWN +I G NG G+ AL L+ +M
Sbjct: 458 VPIGSALSTMYSKCGSLEDGNLVFRRTPN-KDVVSWNAMISGLSHNGQGDEALELFEEML 516
Query: 448 ETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCL 507
G PD T+++I++AC H G G FN M ++ + P +HY C+VDLL+RAG L
Sbjct: 517 AEGMEPDDVTFVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACMVDLLSRAGQL 576
Query: 508 SDASGLAGKLLEGMGPNIWRALLSGCVLH 536
+A G +WR LLS C H
Sbjct: 577 KEAKEFIESANIDHGLCLWRILLSACKNH 605
Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 110/429 (25%), Positives = 207/429 (48%), Gaps = 35/429 (8%)
Query: 67 LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES---------------------- 104
L P++ T++ L + +NL R++HG +++ G +
Sbjct: 10 LNPHTSTLLKKLTHHSQQRNLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAH 69
Query: 105 DLFEGLKNPYLVSCNAIVAGFINNKLFQQA---VLLFNFFRGSGLVPNAVTMLTVIRGCV 161
+F + +VS N+++ G+ N + + LF R ++PNA T+ + +
Sbjct: 70 SIFNAIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAES 129
Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
+L S + H L +K+ D+ V+ S++ MY ++ +++F M ++ +W+
Sbjct: 130 SLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWST 189
Query: 222 MMGLFVDFEYAGDALKIFRE-MRKSRIICDT----VALLNLISVNAILGDLKRGKQLHAQ 276
M+ + +A+K+F +R+ D+ A+L+ ++ +G G+Q+H
Sbjct: 190 MVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSSLAATIYVG---LGRQIHCI 246
Query: 277 VVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
+ GL + LSN+++ MYSKC L+ + +F+ +++ ++W+A+++GY QNG + EA
Sbjct: 247 TIKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEA 306
Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
+ F +M + T+V +L A ++ LE QLH + GF R+ L+
Sbjct: 307 VKLFSRMFSAGIKPSE-YTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVD 365
Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
Y+K G + A F+ + RDV W ++I GY N E AL LY +M G +P+
Sbjct: 366 MYAKAGCLADARKGFDCLQ-ERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDP 424
Query: 457 TYLSILNAC 465
T S+L AC
Sbjct: 425 TMASVLKAC 433
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 122/488 (25%), Positives = 223/488 (45%), Gaps = 37/488 (7%)
Query: 4 DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
D Y + L+ Y K+G +++ +F +PE+N +WS ++ GY+ G E+++K F+ +
Sbjct: 152 DIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFL 211
Query: 64 LSGL--LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL-----------------ES 104
+ + VL + A + L R IH + +K GL ES
Sbjct: 212 REKEEGSDSDYVFTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVALSNALVTMYSKCES 271
Query: 105 -----DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
+F+ + ++ +A+V G+ N +AV LF+ +G+ P+ T++ V+
Sbjct: 272 LNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNA 331
Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYS---CLMDLDAAIQIFREMECKDV 216
C + + +H +KLG + +++DMY+ CL D +E +DV
Sbjct: 332 CSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQE---RDV 388
Query: 217 ISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQ 276
WT ++ +V +AL ++R M+ + II + + +++ + L L+ GKQ+H
Sbjct: 389 ALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGH 448
Query: 277 VVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
+ G E+ + +++ MYSKCG L+ VF + K +VSW A+ISG NG EA
Sbjct: 449 TIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEA 508
Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEI-CLQLHGIAFEAGFPRYRSVQNCLI 395
L F +M E + D +T V+I++A +E + ++ + G C++
Sbjct: 509 LELFEEMLAEGMEP-DDVTFVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACMV 567
Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALY--HKMTETGEVP 453
S+ G + A E + W ++ HG+ L +Y K+ G
Sbjct: 568 DLLSRAGQLKEAKEFIESANIDHGLCLWRILL--SACKNHGKCELGVYAGEKLMALGS-R 624
Query: 454 DSSTYLSI 461
+SSTY+ +
Sbjct: 625 ESSTYVQL 632
Score = 143 bits (360), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 97/372 (26%), Positives = 183/372 (49%), Gaps = 17/372 (4%)
Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD--- 228
+HG I+ G + N +++ Y+ L A IF + CKDV+SW ++ +
Sbjct: 36 VHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHSIFNAIICKDVVSWNSLITGYSQNGG 95
Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
+ +++FREMR I+ + L + + L G+Q HA VV ++ +
Sbjct: 96 ISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSSTVGRQAHALVVKMSSFGDIYV 155
Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL---NQFIKMRQ 345
S++ MY K G ++ VF + E++ +W+ ++SGY G EA+ N F++ ++
Sbjct: 156 DTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLREKE 215
Query: 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
E +DS ++L++ + + Q+H I + G + ++ N L++ YSKC +++
Sbjct: 216 EGSDS--DYVFTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVALSNALVTMYSKCESLN 273
Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
A +F+ G R+ ++W+ ++ GY NG A+ L+ +M G P T + +LNAC
Sbjct: 274 EACKMFDSSGD-RNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNAC 332
Query: 466 GHAGLTNDGLVIFNQMIE---ENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMG 522
+G + + +++ E + + +VD+ A+AGCL+DA L+
Sbjct: 333 SDICYLEEGKQLHSFLLKLGFERHLFATT----ALVDMYAKAGCLADARK-GFDCLQERD 387
Query: 523 PNIWRALLSGCV 534
+W +L+SG V
Sbjct: 388 VALWTSLISGYV 399
Score = 87.4 bits (215), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 106/227 (46%), Gaps = 8/227 (3%)
Query: 251 TVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFN 310
T LL ++ ++ +L G+ +H Q++ G + ++ +N ++ Y+KCG L + S+FN
Sbjct: 14 TSTLLKKLTHHSQQRNLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHSIFN 73
Query: 311 QITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV--DSITLVSILTASGELAA 368
I K +VSW ++I+GY QNG + R+ + + ++ TL I A L +
Sbjct: 74 AIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSLQS 133
Query: 369 LEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIY 428
+ Q H + + V L+ Y K G V+ VF M R+ +W+T++
Sbjct: 134 STVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMP-ERNTYTWSTMVS 192
Query: 429 GYGVNGHGETALALYHKMTETGEVPDSSTY-----LSILNACGHAGL 470
GY G E A+ +++ E S Y LS L A + GL
Sbjct: 193 GYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSSLAATIYVGL 239
>sp|Q9M2Y4|PP276_ARATH Pentatricopeptide repeat-containing protein At3g49740
OS=Arabidopsis thaliana GN=PCMP-E84 PE=2 SV=1
Length = 737
Score = 261 bits (668), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 172/563 (30%), Positives = 295/563 (52%), Gaps = 40/563 (7%)
Query: 4 DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVS-WSIVIHGYSINGFHEKSMKAFSHM 62
D Y+ + LLS FK G I+ A +FD++PE++ V+ W+ +I G +G+HE S++ F M
Sbjct: 122 DVYSWTTLLSASFKLGDIEYAFEVFDKMPERDDVAIWNAMITGCKESGYHETSVELFREM 181
Query: 63 MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK--FGLESDLFEGLKNPYL----- 115
G+ + F +L + +L+ + +H L++K F + S + L Y
Sbjct: 182 HKLGVRHDKFGFATIL-SMCDYGSLDFGKQVHSLVIKAGFFIASSVVNALITMYFNCQVV 240
Query: 116 -----------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
V+ N ++ G K +++L+F + L P +T ++V+
Sbjct: 241 VDACLVFEETDVAVRDQVTFNVVIDGLAGFKR-DESLLVFRKMLEASLRPTDLTFVSVMG 299
Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
C A+ +HGL IK G V+N+ + MYS D AA ++F +E KD+++
Sbjct: 300 SC---SCAAMGHQVHGLAIKTGYEKYTLVSNATMTMYSSFEDFGAAHKVFESLEEKDLVT 356
Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
W M+ + + A+ +++ M + D +L++ + DL + + A ++
Sbjct: 357 WNTMISSYNQAKLGKSAMSVYKRMHIIGVKPDEFTFGSLLATSL---DLDVLEMVQACII 413
Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
GL S++ +SN++I+ YSK G ++ + +F + K+L+SW AIISG+ NG E L
Sbjct: 414 KFGLSSKIEISNALISAYSKNGQIEKADLLFERSLRKNLISWNAIISGFYHNGFPFEGLE 473
Query: 339 QFIKMRQEKTDSV-DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
+F + + + + D+ TL ++L+ ++L + Q H G + + N LI+
Sbjct: 474 RFSCLLESEVRILPDAYTLSTLLSICVSTSSLMLGSQTHAYVLRHGQFKETLIGNALINM 533
Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV-PDSS 456
YS+CG + + VF +M +DVVSWN++I Y +G GE A+ Y M + G+V PD++
Sbjct: 534 YSQCGTIQNSLEVFNQMS-EKDVVSWNSLISAYSRHGEGENAVNTYKTMQDEGKVIPDAA 592
Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK 516
T+ ++L+AC HAGL +GL IFN M+E + V + +H+ C+VDLL RAG L +A L K
Sbjct: 593 TFSAVLSACSHAGLVEEGLEIFNSMVEFHGVIRNVDHFSCLVDLLGRAGHLDEAESLV-K 651
Query: 517 LLE---GMGPNIWRALLSGCVLH 536
+ E G ++W AL S C H
Sbjct: 652 ISEKTIGSRVDVWWALFSACAAH 674
Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 130/501 (25%), Positives = 232/501 (46%), Gaps = 53/501 (10%)
Query: 11 LLSNYFKSGKIKEAENLFDE--IPEKNVVSWSIVIHGYSINGF-HEKSMKAFSHMMLSGL 67
L++ YF + +A +F+E + ++ V++++VI G + GF ++S+ F M+ + L
Sbjct: 230 LITMYFNCQVVVDACLVFEETDVAVRDQVTFNVVIDG--LAGFKRDESLLVFRKMLEASL 287
Query: 68 LPNSFTMVGVL----VAAAGLQNLELARSIHGLMVK----------------------FG 101
P T V V+ AA G Q +HGL +K FG
Sbjct: 288 RPTDLTFVSVMGSCSCAAMGHQ-------VHGLAIKTGYEKYTLVSNATMTMYSSFEDFG 340
Query: 102 LESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
+FE L+ LV+ N +++ + KL + A+ ++ G+ P+ T +++ +
Sbjct: 341 AAHKVFESLEEKDLVTWNTMISSYNQAKLGKSAMSVYKRMHIIGVKPDEFTFGSLLATSL 400
Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
L + E++ IK GL + ++N+++ YS ++ A +F K++ISW
Sbjct: 401 DLD---VLEMVQACIIKFGLSSKIEISNALISAYSKNGQIEKADLLFERSLRKNLISWNA 457
Query: 222 MMGLFVDFEYAGDALKIFREMRKS--RIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
++ F + + L+ F + +S RI+ D L L+S+ L G Q HA V+
Sbjct: 458 IISGFYHNGFPFEGLERFSCLLESEVRILPDAYTLSTLLSICVSTSSLMLGSQTHAYVLR 517
Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
G E + N++I MYS+CG + +S VFNQ++EK +VSW ++IS Y ++G A+N
Sbjct: 518 HGQFKETLIGNALINMYSQCGTIQNSLEVFNQMSEKDVVSWNSLISAYSRHGEGENAVNT 577
Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFE-AGFPRYRSVQNCLISSY 398
+ M+ E D+ T ++L+A +E L++ E G R +CL+
Sbjct: 578 YKTMQDEGKVIPDAATFSAVLSACSHAGLVEEGLEIFNSMVEFHGVIRNVDHFSCLVDLL 637
Query: 399 SKCGNVD----LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALA-LYHKMTETGEVP 453
+ G++D L I + +G DV W + HG+ L + K+ E
Sbjct: 638 GRAGHLDEAESLVKISEKTIGSRVDV--WWALFSACA--AHGDLKLGKMVAKLLMEKEKD 693
Query: 454 DSSTYLSILNACGHAGLTNDG 474
D S Y+ + N AG+ +
Sbjct: 694 DPSVYVQLSNIYAGAGMWKEA 714
Score = 108 bits (271), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 100/384 (26%), Positives = 177/384 (46%), Gaps = 44/384 (11%)
Query: 115 LVSCNAIVAGFINNKLFQQAVLLF-NFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIH 173
L++ N + G + + A+ LF + R + L P+ ++ I L +H
Sbjct: 21 LLNLNRRLTGLTRSGENRNALKLFADVHRCTTLRPDQYSVSLAITTARHLRDTIFGGQVH 80
Query: 174 GLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL---FVDFE 230
I+ GL+ V+N++L +Y L +L + + F E++ DV SWT ++ D E
Sbjct: 81 CYAIRSGLLCHSHVSNTLLSLYERLGNLASLKKKFDEIDEPDVYSWTTLLSASFKLGDIE 140
Query: 231 YAGD-----------------------------ALKIFREMRKSRIICDTVALLNLISVN 261
YA + ++++FREM K + D ++S+
Sbjct: 141 YAFEVFDKMPERDDVAIWNAMITGCKESGYHETSVELFREMHKLGVRHDKFGFATILSM- 199
Query: 262 AILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQ--ITEKSLVS 319
G L GKQ+H+ V+ G + N++I MY C + + VF + + + V+
Sbjct: 200 CDYGSLDFGKQVHSLVIKAGFFIASSVVNALITMYFNCQVVVDACLVFEETDVAVRDQVT 259
Query: 320 WTAIISGYVQNGCAR-EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGI 378
+ +I G G R E+L F KM + D +T VS++ G + + Q+HG+
Sbjct: 260 FNVVIDGLA--GFKRDESLLVFRKMLEASLRPTD-LTFVSVM---GSCSCAAMGHQVHGL 313
Query: 379 AFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGET 438
A + G+ +Y V N ++ YS + A+ VFE + +D+V+WNT+I Y G++
Sbjct: 314 AIKTGYEKYTLVSNATMTMYSSFEDFGAAHKVFESLE-EKDLVTWNTMISSYNQAKLGKS 372
Query: 439 ALALYHKMTETGEVPDSSTYLSIL 462
A+++Y +M G PD T+ S+L
Sbjct: 373 AMSVYKRMHIIGVKPDEFTFGSLL 396
Score = 82.4 bits (202), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 122/270 (45%), Gaps = 35/270 (12%)
Query: 234 DALKIFREMRK-SRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSI 292
+ALK+F ++ + + + D ++ I+ L D G Q+H + GL +SN++
Sbjct: 39 NALKLFADVHRCTTLRPDQYSVSLAITTARHLRDTIFGGQVHCYAIRSGLLCHSHVSNTL 98
Query: 293 IAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV- 351
+++Y + G+L S + F++I E + SWT ++S + G A F KM + ++
Sbjct: 99 LSLYERLGNLASLKKKFDEIDEPDVYSWTTLLSASFKLGDIEYAFEVFDKMPERDDVAIW 158
Query: 352 ------------------------------DSITLVSILTASGELAALEICLQLHGIAFE 381
D +IL+ + +L+ Q+H + +
Sbjct: 159 NAMITGCKESGYHETSVELFREMHKLGVRHDKFGFATILSMC-DYGSLDFGKQVHSLVIK 217
Query: 382 AGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGF-LRDVVSWNTIIYGYGVNGHGETAL 440
AGF SV N LI+ Y C V A +VFEE +RD V++N +I G E+ L
Sbjct: 218 AGFFIASSVVNALITMYFNCQVVVDACLVFEETDVAVRDQVTFNVVIDGLAGFKRDES-L 276
Query: 441 ALYHKMTETGEVPDSSTYLSILNACGHAGL 470
++ KM E P T++S++ +C A +
Sbjct: 277 LVFRKMLEASLRPTDLTFVSVMGSCSCAAM 306
Score = 52.8 bits (125), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 74/178 (41%), Gaps = 31/178 (17%)
Query: 324 ISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG 383
++G ++G R AL F + + T D ++ +T + L Q+H A +G
Sbjct: 28 LTGLTRSGENRNALKLFADVHRCTTLRPDQYSVSLAITTARHLRDTIFGGQVHCYAIRSG 87
Query: 384 FPRYRSVQNCLISSYSKCGN-------------------------------VDLAYIVFE 412
+ V N L+S Y + GN ++ A+ VF+
Sbjct: 88 LLCHSHVSNTLLSLYERLGNLASLKKKFDEIDEPDVYSWTTLLSASFKLGDIEYAFEVFD 147
Query: 413 EMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGL 470
+M DV WN +I G +G+ ET++ L+ +M + G D + +IL+ C + L
Sbjct: 148 KMPERDDVAIWNAMITGCKESGYHETSVELFREMHKLGVRHDKFGFATILSMCDYGSL 205
>sp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protein At4g21300
OS=Arabidopsis thaliana GN=PCMP-E36 PE=3 SV=1
Length = 857
Score = 258 bits (660), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 154/554 (27%), Positives = 287/554 (51%), Gaps = 29/554 (5%)
Query: 8 SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
+S L+ Y + GKI LFD + +K+ V W+++++GY+ G + +K FS M + +
Sbjct: 176 ASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQI 235
Query: 68 LPNSFTMVGVLVAAAGLQNLELARSIHGLMV----------------------KFGLESD 105
PN+ T VL A ++L +HGL+V +F S
Sbjct: 236 SPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASK 295
Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
LF + V+ N +++G++ + L ++++ F SG++P+A+T +++ +
Sbjct: 296 LFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFEN 355
Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
C+ IH ++ + LD+ + ++++D Y + A IF + DV+ +T M+
Sbjct: 356 LEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISG 415
Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
++ D+L++FR + K +I + + L++++ V IL LK G++LH ++ G +
Sbjct: 416 YLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNR 475
Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
+ ++I MY+KCG ++ + +F +++++ +VSW ++I+ Q+ A++ F RQ
Sbjct: 476 CNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIF---RQ 532
Query: 346 EKTDSV--DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
+ D +++ + L+A L + +HG + ++ LI Y+KCGN
Sbjct: 533 MGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGN 592
Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTE-TGEVPDSSTYLSIL 462
+ A VF+ M +++VSWN+II G +G + +L L+H+M E +G PD T+L I+
Sbjct: 593 LKAAMNVFKTMK-EKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEII 651
Query: 463 NACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMG 522
++C H G ++G+ F M E+ ++P QEHY CVVDL RAG L++A +
Sbjct: 652 SSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPD 711
Query: 523 PNIWRALLSGCVLH 536
+W LL C LH
Sbjct: 712 AGVWGTLLGACRLH 725
Score = 191 bits (484), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 152/590 (25%), Positives = 283/590 (47%), Gaps = 39/590 (6%)
Query: 4 DPYNSSKLLSNYFKSGKIKEAENLFD--EIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
D Y ++L Y G + +F ++ ++ W+ +I + NG +++ +
Sbjct: 69 DSYTDERILGMYAMCGSFSDCGKMFYRLDLRRSSIRPWNSIISSFVRNGLLNQALAFYFK 128
Query: 62 MMLSGLLPNSFTMVGVLVAAAGLQNLE-------------------LARSIHGLMVKFG- 101
M+ G+ P+ T ++ A L+N + +A S+ +++G
Sbjct: 129 MLCFGVSPDVSTFPCLVKACVALKNFKGIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGK 188
Query: 102 --LESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
+ S LF+ + V N ++ G+ + F+ R + PNAVT V+
Sbjct: 189 IDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSV 248
Query: 160 CVALGSRALCEL---IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
C S+ L +L +HGL + G+ + S+ NS+L MYS D A ++FR M D
Sbjct: 249 C---ASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADT 305
Query: 217 ISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQ 276
++W M+ +V ++L F EM S ++ D + +L+ + +L+ KQ+H
Sbjct: 306 VTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCY 365
Query: 277 VVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
++ + ++ L++++I Y KC + ++++F+Q +V +TA+ISGY+ NG ++
Sbjct: 366 IMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDS 425
Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
L F + + K S + ITLVSIL G L AL++ +LHG + GF ++ +I
Sbjct: 426 LEMFRWLVKVKI-SPNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNIGCAVID 484
Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
Y+KCG ++LAY +FE + RD+VSWN++I + + A+ ++ +M +G D
Sbjct: 485 MYAKCGRMNLAYEIFERLS-KRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCV 543
Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK 516
+ + L+AC + + G I MI+ + ++D+ A+ G L A +
Sbjct: 544 SISAALSACANLPSESFGKAIHGFMIKHSLASDVYSE-STLIDMYAKCGNLKAAMNVFKT 602
Query: 517 LLEGMGPNI--WRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFL 564
+ E NI W ++++ C H G+ +D+ L +K I+ I+FL
Sbjct: 603 MKEK---NIVSWNSIIAACGNH-GKLKDSLCLFHEMVEKSGIRPDQITFL 648
Score = 180 bits (457), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 122/481 (25%), Positives = 240/481 (49%), Gaps = 24/481 (4%)
Query: 11 LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
LLS Y K G+ +A LF + + V+W+ +I GY +G E+S+ F M+ SG+LP+
Sbjct: 280 LLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPD 339
Query: 71 SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPYL------------V 116
+ T +L + + +NLE + IH +++ + D+F L + Y
Sbjct: 340 AITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFS 399
Query: 117 SCN--------AIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
CN A+++G+++N L+ ++ +F + + PN +T+++++ L + L
Sbjct: 400 QCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKL 459
Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
+HG IK G ++ +V+DMY+ ++ A +IF + +D++SW M+
Sbjct: 460 GRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQ 519
Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
+ A+ IFR+M S I D V++ +S A L GK +H ++ L S++
Sbjct: 520 SDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVYS 579
Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
+++I MY+KCG+L ++ +VF + EK++VSW +II+ +G +++L F +M ++
Sbjct: 580 ESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSG 639
Query: 349 DSVDSITLVSILTASGELAALEICLQ-LHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
D IT + I+++ + ++ ++ + + G + C++ + + G + A
Sbjct: 640 IRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEA 699
Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
Y + M F D W T++ ++ + E A K+ + + +S Y+ I NA +
Sbjct: 700 YETVKSMPFPPDAGVWGTLLGACRLHKNVELAEVASSKLMDL-DPSNSGYYVLISNAHAN 758
Query: 468 A 468
A
Sbjct: 759 A 759
Score = 119 bits (297), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 156/324 (48%), Gaps = 24/324 (7%)
Query: 3 IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
+D + +S L+ YFK + A+N+F + +VV ++ +I GY NG + S++ F +
Sbjct: 373 LDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWL 432
Query: 63 MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES------------------ 104
+ + PN T+V +L L L+L R +HG ++K G ++
Sbjct: 433 VKVKISPNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRM 492
Query: 105 ----DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
++FE L +VS N+++ + A+ +F SG+ + V++ + C
Sbjct: 493 NLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSAC 552
Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
L S + + IHG IK L DV ++++DMY+ +L AA+ +F+ M+ K+++SW
Sbjct: 553 ANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWN 612
Query: 221 RMMGLFVDFEYAGDALKIFREM-RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
++ + D+L +F EM KS I D + L +IS +GD+ G + +
Sbjct: 613 SIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTE 672
Query: 280 G-GLQSELRLSNSIIAMYSKCGDL 302
G+Q + ++ ++ + G L
Sbjct: 673 DYGIQPQQEHYACVVDLFGRAGRL 696
Score = 75.9 bits (185), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 66/275 (24%), Positives = 123/275 (44%), Gaps = 16/275 (5%)
Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQ--ITEKSLVSWTAII 324
L++GKQ+HA +++ + + I+ MY+ CG +F + + S+ W +II
Sbjct: 51 LRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRRSSIRPWNSII 110
Query: 325 SGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGF 384
S +V+NG +AL + KM S D T ++ A L + L G
Sbjct: 111 SSFVRNGLLNQALAFYFKMLCFGV-SPDVSTFPCLVKACVALKNFKGIDFLSDTVSSLGM 169
Query: 385 PRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH 444
V + LI +Y + G +D+ +F+ + +D V WN ++ GY G ++ + +
Sbjct: 170 DCNEFVASSLIKAYLEYGKIDVPSKLFDRV-LQKDCVIWNVMLNGYAKCGALDSVIKGFS 228
Query: 445 KMTETGEVPDSSTYLSILNACGHA-----GLTNDGLVIFNQMIEENKVKPSQEHYGCVVD 499
M P++ T+ +L+ C G+ GLV+ + + E +K S ++
Sbjct: 229 VMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNS------LLS 282
Query: 500 LLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCV 534
+ ++ G DAS L +++ W ++SG V
Sbjct: 283 MYSKCGRFDDASKLF-RMMSRADTVTWNCMISGYV 316
>sp|Q9ZQ74|PP146_ARATH Pentatricopeptide repeat-containing protein At2g03380,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E47 PE=3
SV=1
Length = 689
Score = 257 bits (657), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 163/560 (29%), Positives = 290/560 (51%), Gaps = 27/560 (4%)
Query: 8 SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
++KL+S Y G K+A +FD+IPE + W +++ Y +N + +K + +M G
Sbjct: 79 ATKLVSLYGFFGYTKDARLVFDQIPEPDFYLWKVMLRCYCLNKESVEVVKLYDLLMKHGF 138
Query: 68 LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKF-GLESDLFEGLKNPY------------ 114
+ L A LQ+L+ + IH +VK ++ + GL + Y
Sbjct: 139 RYDDIVFSKALKACTELQDLDNGKKIHCQLVKVPSFDNVVLTGLLDMYAKCGEIKSAHKV 198
Query: 115 --------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
+V +++AG++ N L ++ ++LFN R + ++ N T T+I C L +
Sbjct: 199 FNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIMACTKLSAL 258
Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
+ HG +K G+ L + S+LDMY D+ A ++F E D++ WT M+ +
Sbjct: 259 HQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGY 318
Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
+AL +F++M+ I + V + +++S ++ +L+ G+ +H + G+ +
Sbjct: 319 THNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGCGLIENLELGRSVHGLSIKVGIW-DT 377
Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
++N+++ MY+KC ++ VF +EK +V+W +IISG+ QNG EAL F +M E
Sbjct: 378 NVANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSE 437
Query: 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ--NCLISSYSKCGNV 404
+ + +T+ S+ +A L +L + LH + + GF SV L+ Y+KCG+
Sbjct: 438 SV-TPNGVTVASLFSACASLGSLAVGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDP 496
Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
A ++F+ + ++ ++W+ +I GYG G +L L+ +M + + P+ ST+ SIL+A
Sbjct: 497 QSARLIFDTIE-EKNTITWSAMIGGYGKQGDTIGSLELFEEMLKKQQKPNESTFTSILSA 555
Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
CGH G+ N+G F+ M ++ PS +HY C+VD+LARAG L A + K+
Sbjct: 556 CGHTGMVNEGKKYFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQPDVR 615
Query: 525 IWRALLSGCVLHVGRFQDAE 544
+ A L GC +H RF E
Sbjct: 616 CFGAFLHGCGMH-SRFDLGE 634
Score = 185 bits (470), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 145/507 (28%), Positives = 244/507 (48%), Gaps = 30/507 (5%)
Query: 1 PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
P D + LL Y K G+IK A +F++I +NVV W+ +I GY N E+ + F+
Sbjct: 172 PSFDNVVLTGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFN 231
Query: 61 HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE--SDLFEGLKNPY---- 114
M + +L N +T +++A L L + HG +VK G+E S L L + Y
Sbjct: 232 RMRENNVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCG 291
Query: 115 ----------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
LV A++ G+ +N +A+ LF +G + PN VT+ +V+
Sbjct: 292 DISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCVTIASVLS 351
Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYS-CLMDLDAAIQIFREMECKDVI 217
GC + + L +HGL+IK+G I D +V N+++ MY+ C + DA E E KD++
Sbjct: 352 GCGLIENLELGRSVHGLSIKVG-IWDTNVANALVHMYAKCYQNRDAKYVFEMESE-KDIV 409
Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA-Q 276
+W ++ F +AL +F M + + V + +L S A LG L G LHA
Sbjct: 410 AWNSIISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFSACASLGSLAVGSSLHAYS 469
Query: 277 VVLGGL-QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335
V LG L S + + +++ Y+KCGD S+R +F+ I EK+ ++W+A+I GY + G
Sbjct: 470 VKLGFLASSSVHVGTALLDFYAKCGDPQSARLIFDTIEEKNTITWSAMIGGYGKQGDTIG 529
Query: 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAAL-EICLQLHGIAFEAGFPRYRSVQNCL 394
+L F +M +++ +S T SIL+A G + E + + F C+
Sbjct: 530 SLELFEEMLKKQQKPNES-TFTSILSACGHTGMVNEGKKYFSSMYKDYNFTPSTKHYTCM 588
Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
+ ++ G ++ A + E+M DV + ++G G++ + + KM + D
Sbjct: 589 VDMLARAGELEQALDIIEKMPIQPDVRCFGAFLHGCGMHSRFDLGEIVIKKMLDL-HPDD 647
Query: 455 SSTYLSILNACGHAGLTNDGLVIFNQM 481
+S Y+ + N G N + N M
Sbjct: 648 ASYYVLVSNLYASDGRWNQAKEVRNLM 674
Score = 176 bits (446), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 127/462 (27%), Positives = 220/462 (47%), Gaps = 11/462 (2%)
Query: 76 GVLVAAAGLQNLELARSIHGLMVKFGLESD---LFEGLKNPYLVSCNAIVAGFINNKLFQ 132
GVL + ++ +A + L FG D +F+ + P ++ + NK
Sbjct: 65 GVLTGNGLMGDISIATKLVSLYGFFGYTKDARLVFDQIPEPDFYLWKVMLRCYCLNKESV 124
Query: 133 QAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVL 192
+ V L++ G + + ++ C L + IH +K+ D V +L
Sbjct: 125 EVVKLYDLLMKHGFRYDDIVFSKALKACTELQDLDNGKKIHCQLVKVP-SFDNVVLTGLL 183
Query: 193 DMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTV 252
DMY+ ++ +A ++F ++ ++V+ WT M+ +V + + L +F MR++ ++ +
Sbjct: 184 DMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNEY 243
Query: 253 ALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQI 312
LI L L +GK H +V G++ L S++ MY KCGD+ ++R VFN+
Sbjct: 244 TYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEH 303
Query: 313 TEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEIC 372
+ LV WTA+I GY NG EAL+ F KM+ + + +T+ S+L+ G + LE+
Sbjct: 304 SHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKP-NCVTIASVLSGCGLIENLELG 362
Query: 373 LQLHGIAFEAGFPRYRSVQNCLISSYSKC-GNVDLAYIVFEEMGFLRDVVSWNTIIYGYG 431
+HG++ + G +V N L+ Y+KC N D Y+ EM +D+V+WN+II G+
Sbjct: 363 RSVHGLSIKVGIWD-TNVANALVHMYAKCYQNRDAKYVF--EMESEKDIVAWNSIISGFS 419
Query: 432 VNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQ 491
NG AL L+H+M P+ T S+ +AC G G + ++ + S
Sbjct: 420 QNGSIHEALFLFHRMNSESVTPNGVTVASLFSACASLGSLAVGSSLHAYSVKLGFLASSS 479
Query: 492 EHYG-CVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSG 532
H G ++D A+ G A L +E W A++ G
Sbjct: 480 VHVGTALLDFYAKCGDPQSAR-LIFDTIEEKNTITWSAMIGG 520
Score = 127 bits (318), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 84/294 (28%), Positives = 145/294 (49%), Gaps = 3/294 (1%)
Query: 173 HGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYA 232
HG+ GL+ D+S+ ++ +Y A +F ++ D W M+ + + +
Sbjct: 64 HGVLTGNGLMGDISIATKLVSLYGFFGYTKDARLVFDQIPEPDFYLWKVMLRCYCLNKES 123
Query: 233 GDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSI 292
+ +K++ + K D + + L DL GK++H Q+V + L+ +
Sbjct: 124 VEVVKLYDLLMKHGFRYDDIVFSKALKACTELQDLDNGKKIHCQLVKVPSFDNVVLT-GL 182
Query: 293 IAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVD 352
+ MY+KCG++ S+ VFN IT +++V WT++I+GYV+N E L F +MR+ +
Sbjct: 183 LDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVLG-N 241
Query: 353 SITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFE 412
T +++ A +L+AL HG ++G + L+ Y KCG++ A VF
Sbjct: 242 EYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFN 301
Query: 413 EMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
E + D+V W +I GY NG AL+L+ KM P+ T S+L+ CG
Sbjct: 302 EHSHV-DLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGCG 354
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 114/241 (47%), Gaps = 6/241 (2%)
Query: 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
+Q H + GL ++ ++ ++++Y G +R VF+QI E W ++ Y N
Sbjct: 61 RQSHGVLTGNGLMGDISIATKLVSLYGFFGYTKDARLVFDQIPEPDFYLWKVMLRCYCLN 120
Query: 331 GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV 390
+ E + + + + D I L A EL L+ ++H + P + +V
Sbjct: 121 KESVEVVKLY-DLLMKHGFRYDDIVFSKALKACTELQDLDNGKKIHCQLVKV--PSFDNV 177
Query: 391 Q-NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449
L+ Y+KCG + A+ VF ++ LR+VV W ++I GY N E L L+++M E
Sbjct: 178 VLTGLLDMYAKCGEIKSAHKVFNDIT-LRNVVCWTSMIAGYVKNDLCEEGLVLFNRMREN 236
Query: 450 GEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSD 509
+ + TY +++ AC + G F+ + ++ ++ S ++D+ + G +S+
Sbjct: 237 NVLGNEYTYGTLIMACTKLSALHQG-KWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISN 295
Query: 510 A 510
A
Sbjct: 296 A 296
>sp|Q9XE98|PP303_ARATH Pentatricopeptide repeat-containing protein At4g04370
OS=Arabidopsis thaliana GN=PCMP-E99 PE=3 SV=1
Length = 729
Score = 257 bits (656), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 160/529 (30%), Positives = 268/529 (50%), Gaps = 26/529 (4%)
Query: 4 DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
D Y SS L++ Y K G + A +F+E+ E++VV W+ +I YS G ++ + M
Sbjct: 80 DFYISSSLVNLYAKFGLLAHARKVFEEMRERDVVHWTAMIGCYSRAGIVGEACSLVNEMR 139
Query: 64 LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE-------------------- 103
G+ P T++ +L +G+ + + +H V +G +
Sbjct: 140 FQGIKPGPVTLLEML---SGVLEITQLQCLHDFAVIYGFDCDIAVMNSMLNLYCKCDHVG 196
Query: 104 --SDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
DLF+ ++ +VS N +++G+ + + + L RG GL P+ T +
Sbjct: 197 DAKDLFDQMEQRDMVSWNTMISGYASVGNMSEILKLLYRMRGDGLRPDQQTFGASLSVSG 256
Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
+ + ++H +K G +D+ + +++ MY +A+ ++ + KDV+ WT
Sbjct: 257 TMCDLEMGRMLHCQIVKTGFDVDMHLKTALITMYLKCGKEEASYRVLETIPNKDVVCWTV 316
Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
M+ + A AL +F EM +S + A+ ++++ A LG G +H V+ G
Sbjct: 317 MISGLMRLGRAEKALIVFSEMLQSGSDLSSEAIASVVASCAQLGSFDLGASVHGYVLRHG 376
Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
+ NS+I MY+KCG LD S +F ++ E+ LVSW AIISGY QN +AL F
Sbjct: 377 YTLDTPALNSLITMYAKCGHLDKSLVIFERMNERDLVSWNAIISGYAQNVDLCKALLLFE 436
Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
+M+ + VDS T+VS+L A AL + +H I + V L+ YSKC
Sbjct: 437 EMKFKTVQQVDSFTVVSLLQACSSAGALPVGKLIHCIVIRSFIRPCSLVDTALVDMYSKC 496
Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
G ++ A F+ + + +DVVSW +I GYG +G G+ AL +Y + +G P+ +L++
Sbjct: 497 GYLEAAQRCFDSISW-KDVVSWGILIAGYGFHGKGDIALEIYSEFLHSGMEPNHVIFLAV 555
Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
L++C H G+ GL IF+ M+ + V+P+ EH CVVDLL RA + DA
Sbjct: 556 LSSCSHNGMVQQGLKIFSSMVRDFGVEPNHEHLACVVDLLCRAKRIEDA 604
Score = 214 bits (546), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 168/587 (28%), Positives = 271/587 (46%), Gaps = 81/587 (13%)
Query: 43 IHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIH-------- 94
I+ S +G H++ + FS M+ + LLP++FT +L A A LQ L SIH
Sbjct: 18 INHLSSHGDHKQVLSTFSSMLANKLLPDTFTFPSLLKACASLQRLSFGLSIHQQVLVNGF 77
Query: 95 -----------GLMVKFGL---ESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNF 140
L KFGL +FE ++ +V A++ + + +A L N
Sbjct: 78 SSDFYISSSLVNLYAKFGLLAHARKVFEEMRERDVVHWTAMIGCYSRAGIVGEACSLVNE 137
Query: 141 FRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMD 200
R G+ P VT+L ++ G + + + +H + G D++V NS+L++Y
Sbjct: 138 MRFQGIKPGPVTLLEMLSGVLEITQ---LQCLHDFAVIYGFDCDIAVMNSMLNLYCKCDH 194
Query: 201 LDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISV 260
+ A +F +ME +D++SW M+ + + LK+ MR + D +SV
Sbjct: 195 VGDAKDLFDQMEQRDMVSWNTMISGYASVGNMSEILKLLYRMRGDGLRPDQQTFGASLSV 254
Query: 261 NAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSW 320
+ + DL+ G+ LH Q+V G ++ L ++I MY KCG ++S V I K +V W
Sbjct: 255 SGTMCDLEMGRMLHCQIVKTGFDVDMHLKTALITMYLKCGKEEASYRVLETIPNKDVVCW 314
Query: 321 TAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAF 380
T +ISG ++ G A +AL F +M Q +D + S + S++ + +L + ++ +HG
Sbjct: 315 TVMISGLMRLGRAEKALIVFSEMLQSGSD-LSSEAIASVVASCAQLGSFDLGASVHGYVL 373
Query: 381 EAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETAL 440
G+ N LI+ Y+KCG++D + ++FE M RD+VSWN II GY N AL
Sbjct: 374 RHGYTLDTPALNSLITMYAKCGHLDKSLVIFERMN-ERDLVSWNAIISGYAQNVDLCKAL 432
Query: 441 ALYHKMT-ETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVD 499
L+ +M +T + DS T +S+L AC AG G +I + ++ + ++P +VD
Sbjct: 433 LLFEEMKFKTVQQVDSFTVVSLLQACSSAGALPVGKLI-HCIVIRSFIRPCSLVDTALVD 491
Query: 500 LLARAGCLSDAS---------------------GLAGK-----------LLEGMGPN--I 525
+ ++ G L A G GK L GM PN I
Sbjct: 492 MYSKCGYLEAAQRCFDSISWKDVVSWGILIAGYGFHGKGDIALEIYSEFLHSGMEPNHVI 551
Query: 526 WRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFLNSTSRDFG 572
+ A+LS C H G Q G+ +S RDFG
Sbjct: 552 FLAVLSSCS-HNGMVQQ-----------------GLKIFSSMVRDFG 580
Score = 105 bits (263), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 81/300 (27%), Positives = 156/300 (52%), Gaps = 25/300 (8%)
Query: 3 IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
+D + + L++ Y K GK + + + + IP K+VV W+++I G G EK++ FS M
Sbjct: 278 VDMHLKTALITMYLKCGKEEASYRVLETIPNKDVVCWTVMISGLMRLGRAEKALIVFSEM 337
Query: 63 MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
+ SG +S + V+ + A L + +L S+HG +++ G D
Sbjct: 338 LQSGSDLSSEAIASVVASCAQLGSFDLGASVHGYVLRHGYTLDTPALNSLITMYAKCGHL 397
Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVP-NAVTMLTVIRG 159
+FE + LVS NAI++G+ N +A+LLF + + ++ T++++++
Sbjct: 398 DKSLVIFERMNERDLVSWNAIISGYAQNVDLCKALLLFEEMKFKTVQQVDSFTVVSLLQA 457
Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
C + G+ + +LIH + I+ + V+ +++DMYS L+AA + F + KDV+SW
Sbjct: 458 CSSAGALPVGKLIHCIVIRSFIRPCSLVDTALVDMYSKCGYLEAAQRCFDSISWKDVVSW 517
Query: 220 TRMMGLFVDFEYAGD-ALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
++ + F GD AL+I+ E S + + V L ++S + G +++G ++ + +V
Sbjct: 518 GILIAGY-GFHGKGDIALEIYSEFLHSGMEPNHVIFLAVLSSCSHNGMVQQGLKIFSSMV 576
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 255 bits (652), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 188/665 (28%), Positives = 310/665 (46%), Gaps = 113/665 (16%)
Query: 8 SSKLLSNYFKSGKIKEAENLFDEIPEKN--VVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
+S L+S Y G + A +L P + V W+ +I Y NG K + F M
Sbjct: 62 TSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSL 121
Query: 66 GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPY--------- 114
P+++T V A + ++ S H L + G S++F G L Y
Sbjct: 122 SWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDA 181
Query: 115 -----------LVSCNAIVAGFINNKLFQQAVLLFNFFRGS---GLVPNAVTMLTVIRGC 160
+VS N+I+ + KL + V L F R + G P+ +T++ V+ C
Sbjct: 182 RKVFDEMSVWDVVSWNSIIESYA--KLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPC 239
Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
+LG+ +L + +H + +I ++ V N ++DMY+ +D A +F M KDV+SW
Sbjct: 240 ASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWN 299
Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVA--------------------------- 253
M+ + DA+++F +M++ +I D V
Sbjct: 300 AMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSS 359
Query: 254 --------LLNLISVNAILGDLKRGKQLHAQVVL-------GGLQSELRLSNSIIAMYSK 298
L++++S A +G L GK++H + G E + N +I MY+K
Sbjct: 360 GIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAK 419
Query: 299 CGDLDSSRSVFNQIT--EKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDS-VDSIT 355
C +D++R++F+ ++ E+ +V+WT +I GY Q+G A +AL +M +E + ++ T
Sbjct: 420 CKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFT 479
Query: 356 LVSILTASGELAALEICLQLHGIAF---EAGFPRYRSVQNCLISSYSKCGNVDLAYIVFE 412
+ L A LAAL I Q+H A + P + V NCLI Y+KCG++ A +VF+
Sbjct: 480 ISCALVACASLAALRIGKQIHAYALRNQQNAVPLF--VSNCLIDMYAKCGSISDARLVFD 537
Query: 413 EMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTN 472
M ++ V+W +++ GYG++G+GE AL ++ +M G D T L +L AC H+G+ +
Sbjct: 538 NM-MAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMID 596
Query: 473 DGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSG 532
G+ FN+M V P EHY C+VDLL RAG L+ A L ++ P +W A LS
Sbjct: 597 QGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSC 656
Query: 533 CVLH---------------------------------VGRFQDAEALRSGSQKKGIIKIP 559
C +H GR++D +RS + KG+ K P
Sbjct: 657 CRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRP 716
Query: 560 GISFL 564
G S++
Sbjct: 717 GCSWV 721
Score = 140 bits (352), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 100/349 (28%), Positives = 167/349 (47%), Gaps = 10/349 (2%)
Query: 170 ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKD--VISWTRMMGLFV 227
+LIH + G IL +++ + ++ Y + L A+ + R D V W ++ +
Sbjct: 45 KLIHQKLLSFG-ILTLNLTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYG 103
Query: 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287
D A L +F M D + + ++ G+ HA ++ G S +
Sbjct: 104 DNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVF 163
Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
+ N+++AMYS+C L +R VF++++ +VSW +II Y + G + AL F +M E
Sbjct: 164 VGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEF 223
Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407
D+ITLV++L L + QLH A + + V NCL+ Y+KCG +D A
Sbjct: 224 GCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEA 283
Query: 408 YIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
VF M ++DVVSWN ++ GY G E A+ L+ KM E D T+ + ++
Sbjct: 284 NTVFSNMS-VKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQ 342
Query: 468 AGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK 516
GL + L + QM+ +KP++ V + +GC S + + GK
Sbjct: 343 RGLGYEALGVCRQMLSSG-IKPNE-----VTLISVLSGCASVGALMHGK 385
>sp|O80647|PP195_ARATH Pentatricopeptide repeat-containing protein At2g39620
OS=Arabidopsis thaliana GN=PCMP-E33 PE=3 SV=1
Length = 836
Score = 252 bits (644), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 160/562 (28%), Positives = 288/562 (51%), Gaps = 25/562 (4%)
Query: 8 SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
SS L+ Y + AE++F+E+ K+ SW ++ Y+ NGF E+ ++ F M +
Sbjct: 237 SSGLIDMYCNCADLYAAESVFEEVWRKDESSWGTMMAAYAHNGFFEEVLELFDLMRNYDV 296
Query: 68 LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
N L AAA + +L +IH V+ GL D
Sbjct: 297 RMNKVAAASALQAAAYVGDLVKGIAIHDYAVQQGLIGDVSVATSLMSMYSKCGELEIAEQ 356
Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
LF +++ +VS +A++A + +A+ LF + PNAVT+ +V++GC + +
Sbjct: 357 LFINIEDRDVVSWSAMIASYEQAGQHDEAISLFRDMMRIHIKPNAVTLTSVLQGCAGVAA 416
Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
L + IH IK + ++ +V+ MY+ A++ F + KD +++ +
Sbjct: 417 SRLGKSIHCYAIKADIESELETATAVISMYAKCGRFSPALKAFERLPIKDAVAFNALAQG 476
Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
+ A A +++ M+ + D+ ++ ++ A D RG ++ Q++ G SE
Sbjct: 477 YTQIGDANKAFDVYKNMKLHGVCPDSRTMVGMLQTCAFCSDYARGSCVYGQIIKHGFDSE 536
Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQIT-EKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
+++++I M++KC L ++ +F++ EKS VSW +++GY+ +G A EA+ F +M+
Sbjct: 537 CHVAHALINMFTKCDALAAAIVLFDKCGFEKSTVSWNIMMNGYLLHGQAEEAVATFRQMK 596
Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
EK +++T V+I+ A+ EL+AL + + +H + GF V N L+ Y+KCG +
Sbjct: 597 VEKFQP-NAVTFVNIVRAAAELSALRVGMSVHSSLIQCGFCSQTPVGNSLVDMYAKCGMI 655
Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
+ + F E+ + +VSWNT++ Y +G A++L+ M E PDS ++LS+L+A
Sbjct: 656 ESSEKCFIEISN-KYIVSWNTMLSAYAAHGLASCAVSLFLSMQENELKPDSVSFLSVLSA 714
Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
C HAGL +G IF +M E +K++ EHY C+VDLL +AG +A + ++
Sbjct: 715 CRHAGLVEEGKRIFEEMGERHKIEAEVEHYACMVDLLGKAGLFGEAVEMMRRMRVKTSVG 774
Query: 525 IWRALLSGCVLHVGRFQDAEAL 546
+W ALL+ +H + AL
Sbjct: 775 VWGALLNSSRMHCNLWLSNAAL 796
Score = 208 bits (530), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 158/571 (27%), Positives = 269/571 (47%), Gaps = 41/571 (7%)
Query: 3 IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
+ P+N +L++ Y + + +FD + + VV W+ +I GY+ G H +++ F +M
Sbjct: 33 LKPHN--QLINAYSLFQRQDLSRVIFDSVRDPGVVLWNSMIRGYTRAGLHREALGFFGYM 90
Query: 63 MLS-GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------- 105
G+ P+ ++ L A AG + + IH L+ + GLESD
Sbjct: 91 SEEKGIDPDKYSFTFALKACAGSMDFKKGLRIHDLIAEMGLESDVYIGTALVEMYCKARD 150
Query: 106 ------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
+F+ + +V+ N +V+G N A+LLF+ R + + V++ +I
Sbjct: 151 LVSARQVFDKMHVKDVVTWNTMVSGLAQNGCSSAALLLFHDMRSCCVDIDHVSLYNLIPA 210
Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
L +C +HGL IK G I S + ++DMY DL AA +F E+ KD SW
Sbjct: 211 VSKLEKSDVCRCLHGLVIKKGFIFAFS--SGLIDMYCNCADLYAAESVFEEVWRKDESSW 268
Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
MM + + + L++F MR + + VA + + A +GDL +G +H V
Sbjct: 269 GTMMAAYAHNGFFEEVLELFDLMRNYDVRMNKVAAASALQAAAYVGDLVKGIAIHDYAVQ 328
Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
GL ++ ++ S+++MYSKCG+L+ + +F I ++ +VSW+A+I+ Y Q G EA++
Sbjct: 329 QGLIGDVSVATSLMSMYSKCGELEIAEQLFINIEDRDVVSWSAMIASYEQAGQHDEAISL 388
Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
F M + +++TL S+L +AA + +H A +A +IS Y+
Sbjct: 389 FRDMMRIHIKP-NAVTLTSVLQGCAGVAASRLGKSIHCYAIKADIESELETATAVISMYA 447
Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
KCG A FE + ++D V++N + GY G A +Y M G PDS T +
Sbjct: 448 KCGRFSPALKAFERLP-IKDAVAFNALAQGYTQIGDANKAFDVYKNMKLHGVCPDSRTMV 506
Query: 460 SILNACGHAGLTNDGLVIFNQMIE-----ENKVKPSQEHYGCVVDLLARAGCLSDASGLA 514
+L C G ++ Q+I+ E V + + D LA A L D G
Sbjct: 507 GMLQTCAFCSDYARGSCVYGQIIKHGFDSECHVAHALINMFTKCDALAAAIVLFDKCGFE 566
Query: 515 GKLLEGMGPNIWRALLSGCVLHVGRFQDAEA 545
+ W +++G +LH G+ ++A A
Sbjct: 567 KSTVS------WNIMMNGYLLH-GQAEEAVA 590
Score = 192 bits (487), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 127/503 (25%), Positives = 246/503 (48%), Gaps = 27/503 (5%)
Query: 4 DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
D Y + L+ Y K+ + A +FD++ K+VV+W+ ++ G + NG ++ F M
Sbjct: 134 DVYIGTALVEMYCKARDLVSARQVFDKMHVKDVVTWNTMVSGLAQNGCSSAALLLFHDMR 193
Query: 64 LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCN---- 119
+ + ++ ++ A + L+ ++ R +HGL++K G GL + Y CN
Sbjct: 194 SCCVDIDHVSLYNLIPAVSKLEKSDVCRCLHGLVIKKGFIFAFSSGLIDMY---CNCADL 250
Query: 120 -------------------AIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
++A + +N F++ + LF+ R + N V + ++
Sbjct: 251 YAAESVFEEVWRKDESSWGTMMAAYAHNGFFEEVLELFDLMRNYDVRMNKVAAASALQAA 310
Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
+G IH ++ GLI DVSV S++ MYS +L+ A Q+F +E +DV+SW+
Sbjct: 311 AYVGDLVKGIAIHDYAVQQGLIGDVSVATSLMSMYSKCGELEIAEQLFINIEDRDVVSWS 370
Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
M+ + +A+ +FR+M + I + V L +++ A + + GK +H +
Sbjct: 371 AMIASYEQAGQHDEAISLFRDMMRIHIKPNAVTLTSVLQGCAGVAASRLGKSIHCYAIKA 430
Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
++SEL + ++I+MY+KCG + F ++ K V++ A+ GY Q G A +A + +
Sbjct: 431 DIESELETATAVISMYAKCGRFSPALKAFERLPIKDAVAFNALAQGYTQIGDANKAFDVY 490
Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
M+ DS T+V +L + ++G + GF V + LI+ ++K
Sbjct: 491 KNMKLHGV-CPDSRTMVGMLQTCAFCSDYARGSCVYGQIIKHGFDSECHVAHALINMFTK 549
Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
C + A ++F++ GF + VSWN ++ GY ++G E A+A + +M P++ T+++
Sbjct: 550 CDALAAAIVLFDKCGFEKSTVSWNIMMNGYLLHGQAEEAVATFRQMKVEKFQPNAVTFVN 609
Query: 461 ILNACGHAGLTNDGLVIFNQMIE 483
I+ A G+ + + +I+
Sbjct: 610 IVRAAAELSALRVGMSVHSSLIQ 632
Score = 119 bits (298), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 88/299 (29%), Positives = 148/299 (49%), Gaps = 12/299 (4%)
Query: 149 NAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIF 208
N +L ++R C R L + +HG I GL +N +++ YS D + IF
Sbjct: 4 NYTNLLLMLRECKNF--RCLLQ-VHGSLIVSGL----KPHNQLINAYSLFQRQDLSRVIF 56
Query: 209 REMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSR-IICDTVALLNLISVNAILGDL 267
+ V+ W M+ + +AL F M + + I D + + A D
Sbjct: 57 DSVRDPGVVLWNSMIRGYTRAGLHREALGFFGYMSEEKGIDPDKYSFTFALKACAGSMDF 116
Query: 268 KRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGY 327
K+G ++H + GL+S++ + +++ MY K DL S+R VF+++ K +V+W ++SG
Sbjct: 117 KKGLRIHDLIAEMGLESDVYIGTALVEMYCKARDLVSARQVFDKMHVKDVVTWNTMVSGL 176
Query: 328 VQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRY 387
QNGC+ AL F MR D +D ++L +++ A +L ++C LHG+ + GF
Sbjct: 177 AQNGCSSAALLLFHDMRSCCVD-IDHVSLYNLIPAVSKLEKSDVCRCLHGLVIKKGF--I 233
Query: 388 RSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM 446
+ + LI Y C ++ A VFEE+ + +D SW T++ Y NG E L L+ M
Sbjct: 234 FAFSSGLIDMYCNCADLYAAESVFEEV-WRKDESSWGTMMAAYAHNGFFEEVLELFDLM 291
>sp|Q9SJ73|PP148_ARATH Pentatricopeptide repeat-containing protein At2g04860
OS=Arabidopsis thaliana GN=PCMP-E74 PE=2 SV=3
Length = 692
Score = 251 bits (642), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 165/553 (29%), Positives = 275/553 (49%), Gaps = 29/553 (5%)
Query: 6 YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
Y + LL+ Y K G + A+ LFDE+PE++ V W+ +I GYS NG+ + K F M+
Sbjct: 86 YVKTSLLNLYLKKGCVTSAQMLFDEMPERDTVVWNALICGYSRNGYECDAWKLFIVMLQQ 145
Query: 66 GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-------------------- 105
G P++ T+V +L + RS+HG+ K GLE D
Sbjct: 146 GFSPSATTLVNLLPFCGQCGFVSQGRSVHGVAAKSGLELDSQVKNALISFYSKCAELGSA 205
Query: 106 --LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
LF +K+ VS N ++ + + L ++A+ +F + + VT++ ++ V+
Sbjct: 206 EVLFREMKDKSTVSWNTMIGAYSQSGLQEEAITVFKNMFEKNVEISPVTIINLLSAHVSH 265
Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
E +H L +K G++ D+SV S++ YS L +A +++ + ++ T ++
Sbjct: 266 ------EPLHCLVVKCGMVNDISVVTSLVCAYSRCGCLVSAERLYASAKQDSIVGLTSIV 319
Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
+ + A+ F + R+ + D VAL+ ++ + G LH + GL
Sbjct: 320 SCYAEKGDMDIAVVYFSKTRQLCMKIDAVALVGILHGCKKSSHIDIGMSLHGYAIKSGLC 379
Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
++ + N +I MYSK D+++ +F Q+ E L+SW ++ISG VQ+G A A F +M
Sbjct: 380 TKTLVVNGLITMYSKFDDVETVLFLFEQLQETPLISWNSVISGCVQSGRASTAFEVFHQM 439
Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
D+IT+ S+L +L L + +LHG F V LI Y+KCGN
Sbjct: 440 MLTGGLLPDAITIASLLAGCSQLCCLNLGKELHGYTLRNNFENENFVCTALIDMYAKCGN 499
Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
A VF+ + +WN++I GY ++G AL+ Y +M E G PD T+L +L+
Sbjct: 500 EVQAESVFKSIK-APCTATWNSMISGYSLSGLQHRALSCYLEMREKGLKPDEITFLGVLS 558
Query: 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP 523
AC H G ++G + F MI+E + P+ +HY +V LL RA ++A L K+
Sbjct: 559 ACNHGGFVDEGKICFRAMIKEFGISPTLQHYALMVGLLGRACLFTEALYLIWKMDIKPDS 618
Query: 524 NIWRALLSGCVLH 536
+W ALLS C++H
Sbjct: 619 AVWGALLSACIIH 631
Score = 169 bits (428), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 136/501 (27%), Positives = 236/501 (47%), Gaps = 39/501 (7%)
Query: 59 FSHMMLSGLLPNSFTM--------------------VGVLVAAAGLQNLELAR-SIHGLM 97
F ++ S L PN FTM V + +GL + S+ L
Sbjct: 36 FRDLLRSSLTPNHFTMSIFLQATTTSFNSFKLQVEQVQTHLTKSGLDRFVYVKTSLLNLY 95
Query: 98 VKFGLESD---LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTML 154
+K G + LF+ + V NA++ G+ N A LF G P+A T++
Sbjct: 96 LKKGCVTSAQMLFDEMPERDTVVWNALICGYSRNGYECDAWKLFIVMLQQGFSPSATTLV 155
Query: 155 TVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
++ C G + +HG+ K GL LD V N+++ YS +L +A +FREM+ K
Sbjct: 156 NLLPFCGQCGFVSQGRSVHGVAAKSGLELDSQVKNALISFYSKCAELGSAEVLFREMKDK 215
Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
+SW M+G + +A+ +F+ M + + V ++NL+S + + LH
Sbjct: 216 STVSWNTMIGAYSQSGLQEEAITVFKNMFEKNVEISPVTIINLLSAHV------SHEPLH 269
Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
VV G+ +++ + S++ YS+CG L S+ ++ + S+V T+I+S Y + G
Sbjct: 270 CLVVKCGMVNDISVVTSLVCAYSRCGCLVSAERLYASAKQDSIVGLTSIVSCYAEKGDMD 329
Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
A+ F K RQ +D++ LV IL + + ++I + LHG A ++G V N L
Sbjct: 330 IAVVYFSKTRQ-LCMKIDAVALVGILHGCKKSSHIDIGMSLHGYAIKSGLCTKTLVVNGL 388
Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE-VP 453
I+ YSK +V+ +FE++ ++SWN++I G +G TA ++H+M TG +P
Sbjct: 389 ITMYSKFDDVETVLFLFEQLQ-ETPLISWNSVISGCVQSGRASTAFEVFHQMMLTGGLLP 447
Query: 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGC--VVDLLARAGCLSDAS 511
D+ T S+L C N G + + N E++ C ++D+ A+ G A
Sbjct: 448 DAITIASLLAGCSQLCCLNLGKELHGYTLRNNF---ENENFVCTALIDMYAKCGNEVQAE 504
Query: 512 GLAGKLLEGMGPNIWRALLSG 532
+ K ++ W +++SG
Sbjct: 505 SVF-KSIKAPCTATWNSMISG 524
Score = 138 bits (347), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 101/383 (26%), Positives = 185/383 (48%), Gaps = 30/383 (7%)
Query: 3 IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
+D + L+S Y K ++ AE LF E+ +K+ VSW+ +I YS +G E+++ F +M
Sbjct: 184 LDSQVKNALISFYSKCAELGSAEVLFREMKDKSTVSWNTMIGAYSQSGLQEEAITVFKNM 243
Query: 63 MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------- 105
+ + T++ +L A + L H L+VK G+ +D
Sbjct: 244 FEKNVEISPVTIINLLSAHVSHEPL------HCLVVKCGMVNDISVVTSLVCAYSRCGCL 297
Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
L+ K +V +IV+ + AV+ F+ R + +AV ++ ++ GC
Sbjct: 298 VSAERLYASAKQDSIVGLTSIVSCYAEKGDMDIAVVYFSKTRQLCMKIDAVALVGILHGC 357
Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
+ +HG IK GL V N ++ MYS D++ + +F +++ +ISW
Sbjct: 358 KKSSHIDIGMSLHGYAIKSGLCTKTLVVNGLITMYSKFDDVETVLFLFEQLQETPLISWN 417
Query: 221 RMMGLFVDFEYAGDALKIFREMRKS-RIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
++ V A A ++F +M + ++ D + + +L++ + L L GK+LH +
Sbjct: 418 SVISGCVQSGRASTAFEVFHQMMLTGGLLPDAITIASLLAGCSQLCCLNLGKELHGYTLR 477
Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
++E + ++I MY+KCG+ + SVF I +W ++ISGY +G AL+
Sbjct: 478 NNFENENFVCTALIDMYAKCGNEVQAESVFKSIKAPCTATWNSMISGYSLSGLQHRALSC 537
Query: 340 FIKMRQEKTDSVDSITLVSILTA 362
+++MR EK D IT + +L+A
Sbjct: 538 YLEMR-EKGLKPDEITFLGVLSA 559
Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 102/421 (24%), Positives = 191/421 (45%), Gaps = 18/421 (4%)
Query: 119 NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV-ALGSRAL-CELIHGLT 176
++++ I+ ++ + +F S L PN TM ++ + S L E +
Sbjct: 17 HSLLKSCIHGEISSSPITIFRDLLRSSLTPNHFTMSIFLQATTTSFNSFKLQVEQVQTHL 76
Query: 177 IKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDAL 236
K GL V V S+L++Y + +A +F EM +D + W ++ + Y DA
Sbjct: 77 TKSGLDRFVYVKTSLLNLYLKKGCVTSAQMLFDEMPERDTVVWNALICGYSRNGYECDAW 136
Query: 237 KIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMY 296
K+F M + L+NL+ G + +G+ +H GL+ + ++ N++I+ Y
Sbjct: 137 KLFIVMLQQGFSPSATTLVNLLPFCGQCGFVSQGRSVHGVAAKSGLELDSQVKNALISFY 196
Query: 297 SKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITL 356
SKC +L S+ +F ++ +KS VSW +I Y Q+G EA+ F M EK + +T+
Sbjct: 197 SKCAELGSAEVLFREMKDKSTVSWNTMIGAYSQSGLQEEAITVFKNMF-EKNVEISPVTI 255
Query: 357 VSILTA--SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM 414
+++L+A S E LH + + G SV L+ +YS+CG + A ++
Sbjct: 256 INLLSAHVSHE--------PLHCLVVKCGMVNDISVVTSLVCAYSRCGCLVSAERLYASA 307
Query: 415 GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDG 474
+V +I+ Y G + A+ + K + D+ + IL+ C + + G
Sbjct: 308 K-QDSIVGLTSIVSCYAEKGDMDIAVVYFSKTRQLCMKIDAVALVGILHGCKKSSHIDIG 366
Query: 475 LVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI-WRALLSGC 533
+ + I+ + G ++ + ++ + L +L E P I W +++SGC
Sbjct: 367 MSLHGYAIKSGLCTKTLVVNG-LITMYSKFDDVETVLFLFEQLQE--TPLISWNSVISGC 423
Query: 534 V 534
V
Sbjct: 424 V 424
>sp|P0C898|PP232_ARATH Putative pentatricopeptide repeat-containing protein At3g15130
OS=Arabidopsis thaliana GN=PCMP-H86 PE=3 SV=1
Length = 689
Score = 251 bits (641), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 149/435 (34%), Positives = 240/435 (55%), Gaps = 6/435 (1%)
Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
+F+ + +VS +A+++G + N + ++ LF+ G+ PN T T ++ C L +
Sbjct: 63 VFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNA 122
Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
IHG +K+G + V V NS++DMYS ++ A ++FR + + +ISW M+
Sbjct: 123 LEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAG 182
Query: 226 FVDFEYAGDALKIFREMRKSRII--CDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
FV Y AL F M+++ I D L +L+ + G + GKQ+H +V G
Sbjct: 183 FVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFH 242
Query: 284 --SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
S ++ S++ +Y KCG L S+R F+QI EK+++SW+++I GY Q G EA+ F
Sbjct: 243 CPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFK 302
Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
++ QE +DS L SI+ + A L Q+ +A + SV N ++ Y KC
Sbjct: 303 RL-QELNSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKC 361
Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
G VD A F EM L+DV+SW +I GYG +G G+ ++ ++++M PD YL++
Sbjct: 362 GLVDEAEKCFAEMQ-LKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAV 420
Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
L+AC H+G+ +G +F++++E + +KP EHY CVVDLL RAG L +A L +
Sbjct: 421 LSACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKP 480
Query: 522 GPNIWRALLSGCVLH 536
IW+ LLS C +H
Sbjct: 481 NVGIWQTLLSLCRVH 495
Score = 163 bits (413), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 134/506 (26%), Positives = 242/506 (47%), Gaps = 53/506 (10%)
Query: 7 NSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSG 66
S+ L+ Y K + A +FD +PE+NVVSWS ++ G+ +NG + S+ FS M G
Sbjct: 43 TSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQG 102
Query: 67 LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE----------------------S 104
+ PN FT L A L LE IHG +K G E
Sbjct: 103 IYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAE 162
Query: 105 DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLV--PNAVTMLTVIRGCVA 162
+F + + L+S NA++AGF++ +A+ F + + + P+ T+ ++++ C +
Sbjct: 163 KVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSS 222
Query: 163 LGSRALCELIHGLTIKLGLILDVS--VNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
G + IHG ++ G S + S++D+Y L +A + F +++ K +ISW+
Sbjct: 223 TGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWS 282
Query: 221 RM-MGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
+ +G + E+ +A+ +F+ +++ D+ AL ++I V A L++GKQ+ A V
Sbjct: 283 SLILGYAQEGEFV-EAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQALAVK 341
Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
E + NS++ MY KCG +D + F ++ K ++SWT +I+GY ++G ++++
Sbjct: 342 LPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRI 401
Query: 340 FIKMRQE--KTDSVDSITLVSILTASGELAALE----ICLQLHGIAFEAGFPRYRSVQNC 393
F +M + + D V + ++S + SG + E L+ HGI PR C
Sbjct: 402 FYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIK-----PRVEHYA-C 455
Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV- 452
++ + G + A + + M +V W T++ V HG+ L E G++
Sbjct: 456 VVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRV--HGDIELG-----KEVGKIL 508
Query: 453 -----PDSSTYLSILNACGHAGLTND 473
+ + Y+ + N G AG N+
Sbjct: 509 LRIDAKNPANYVMMSNLYGQAGYWNE 534
Score = 139 bits (350), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 91/334 (27%), Positives = 168/334 (50%), Gaps = 7/334 (2%)
Query: 146 LVPNA-VTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAA 204
++PN +++++R C G +H +K G L++ +N ++DMY + A
Sbjct: 1 MIPNQRQNLVSILRVCTRKGLSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMA 60
Query: 205 IQIFREMECKDVISWTRMM-GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAI 263
++F M ++V+SW+ +M G ++ + G +L +F EM + I + + +
Sbjct: 61 YKVFDSMPERNVVSWSALMSGHVLNGDLKG-SLSLFSEMGRQGIYPNEFTFSTNLKACGL 119
Query: 264 LGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAI 323
L L++G Q+H + G + + + NS++ MYSKCG ++ + VF +I ++SL+SW A+
Sbjct: 120 LNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAM 179
Query: 324 ISGYVQNGCAREALNQFIKMRQEK-TDSVDSITLVSILTASGELAALEICLQLHGIAFEA 382
I+G+V G +AL+ F M++ + D TL S+L A + Q+HG +
Sbjct: 180 IAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRS 239
Query: 383 GF--PRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETAL 440
GF P ++ L+ Y KCG + A F+++ + ++SW+++I GY G A+
Sbjct: 240 GFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIK-EKTMISWSSLILGYAQEGEFVEAM 298
Query: 441 ALYHKMTETGEVPDSSTYLSILNACGHAGLTNDG 474
L+ ++ E DS SI+ L G
Sbjct: 299 GLFKRLQELNSQIDSFALSSIIGVFADFALLRQG 332
Score = 122 bits (306), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 93/294 (31%), Positives = 146/294 (49%), Gaps = 12/294 (4%)
Query: 254 LLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT 313
L++++ V G +G Q+H ++ G L SN +I MY KC + + VF+ +
Sbjct: 9 LVSILRVCTRKGLSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMP 68
Query: 314 EKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICL 373
E+++VSW+A++SG+V NG + +L+ F +M ++ + T + L A G L ALE L
Sbjct: 69 ERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYP-NEFTFSTNLKACGLLNALEKGL 127
Query: 374 QLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVN 433
Q+HG + GF V N L+ YSKCG ++ A VF + R ++SWN +I G+
Sbjct: 128 QIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRI-VDRSLISWNAMIAGFVHA 186
Query: 434 GHGETALALYHKMTETG--EVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQ 491
G+G AL + M E E PD T S+L AC G+ G I ++ PS
Sbjct: 187 GYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSS 246
Query: 492 EH-YGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAE 544
G +VDL + G L A ++ E + ++S L +G Q+ E
Sbjct: 247 ATITGSLVDLYVKCGYLFSARKAFDQIKE-------KTMISWSSLILGYAQEGE 293
>sp|O49619|PP350_ARATH Pentatricopeptide repeat-containing protein At4g35130,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H27 PE=3
SV=1
Length = 804
Score = 251 bits (641), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 161/558 (28%), Positives = 291/558 (52%), Gaps = 41/558 (7%)
Query: 9 SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
++ L + S +++A LFDE+ + + W+++I G++ G + ++++ +S M+ +G+
Sbjct: 68 TRALRGFADSRLMEDALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVK 127
Query: 69 PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------------- 106
++FT V+ + AG+ +LE + IH +++K G SD+
Sbjct: 128 ADTFTYPFVIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKV 187
Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
FE + +VS N++++G++ +++LF G P+ + ++ + C + S
Sbjct: 188 FEEMPERDIVSWNSMISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSP 247
Query: 167 ALCELIHGLTIKLGLIL-DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
+ + IH ++ + DV V S+LDMYS ++ A +IF M +++++W M+G
Sbjct: 248 KMGKEIHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGC 307
Query: 226 FVDFEYAGDALKIFREMRKSR-IICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
+ DA F++M + + D + +NL+ +AIL G+ +H + G
Sbjct: 308 YARNGRVTDAFLCFQKMSEQNGLQPDVITSINLLPASAIL----EGRTIHGYAMRRGFLP 363
Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
+ L ++I MY +CG L S+ +F+++ EK+++SW +II+ YVQNG AL F
Sbjct: 364 HMVLETALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAYVQNGKNYSALELF---- 419
Query: 345 QEKTDS---VDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
QE DS DS T+ SIL A E +L ++H ++ + + N L+ Y+ C
Sbjct: 420 QELWDSSLVPDSTTIASILPAYAESLSLSEGREIHAYIVKSRYWSNTIILNSLVHMYAMC 479
Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
G+++ A F + L+DVVSWN+II Y V+G G ++ L+ +M + P+ ST+ S+
Sbjct: 480 GDLEDARKCFNHI-LLKDVVSWNSIIMAYAVHGFGRISVWLFSEMIASRVNPNKSTFASL 538
Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
L AC +G+ ++G F M E + P EHYGC++DL+ R G S A + LE M
Sbjct: 539 LAACSISGMVDEGWEYFESMKREYGIDPGIEHYGCMLDLIGRTGNFSAAK----RFLEEM 594
Query: 522 GPNIWRALLSGCVLHVGR 539
P + A + G +L+ R
Sbjct: 595 -PFVPTARIWGSLLNASR 611
Score = 164 bits (415), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 130/502 (25%), Positives = 230/502 (45%), Gaps = 45/502 (8%)
Query: 4 DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
D Y + L+S Y K G +AE +F+E+PE+++VSW+ +I GY G S+ F M+
Sbjct: 164 DVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIVSWNSMISGYLALGDGFSSLMLFKEML 223
Query: 64 LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES------------------- 104
G P+ F+ + L A + + + ++ + IH V+ +E+
Sbjct: 224 KCGFKPDRFSTMSALGACSHVYSPKMGKEIHCHAVRSRIETGDVMVMTSILDMYSKYGEV 283
Query: 105 ----DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFN-FFRGSGLVPNAVTMLTVIRG 159
+F G+ +V+ N ++ + N A L F +GL P+ +T + ++
Sbjct: 284 SYAERIFNGMIQRNIVAWNVMIGCYARNGRVTDAFLCFQKMSEQNGLQPDVITSINLLPA 343
Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
L R IHG ++ G + + + +++DMY L +A IF M K+VISW
Sbjct: 344 SAILEGRT----IHGYAMRRGFLPHMVLETALIDMYGECGQLKSAEVIFDRMAEKNVISW 399
Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
++ +V AL++F+E+ S ++ D+ + +++ A L G+++HA +V
Sbjct: 400 NSIIAAYVQNGKNYSALELFQELWDSSLVPDSTTIASILPAYAESLSLSEGREIHAYIVK 459
Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
S + NS++ MY+ CGDL+ +R FN I K +VSW +II Y +G R ++
Sbjct: 460 SRYWSNTIILNSLVHMYAMCGDLEDARKCFNHILLKDVVSWNSIIMAYAVHGFGRISVWL 519
Query: 340 FIKMRQEKTDSVDSITLVSILTA---SGEL----AALEICLQLHGIAFEAGFPRYRSVQN 392
F +M + + S T S+L A SG + E + +GI + G Y
Sbjct: 520 FSEMIASRVNPNKS-TFASLLAACSISGMVDEGWEYFESMKREYGI--DPGIEHY----G 572
Query: 393 CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALY-HKMTETGE 451
C++ + GN A EEM F+ W +++ H + +A + + E
Sbjct: 573 CMLDLIGRTGNFSAAKRFLEEMPFVPTARIWGSLL--NASRNHKDITIAEFAAEQIFKME 630
Query: 452 VPDSSTYLSILNACGHAGLTND 473
++ Y+ +LN AG D
Sbjct: 631 HDNTGCYVLLLNMYAEAGRWED 652
>sp|Q9LU94|PP255_ARATH Putative pentatricopeptide repeat-containing protein At3g25970
OS=Arabidopsis thaliana GN=PCMP-E46 PE=3 SV=2
Length = 701
Score = 250 bits (639), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 167/560 (29%), Positives = 276/560 (49%), Gaps = 35/560 (6%)
Query: 4 DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
D Y S+++L +Y K G + A LFDE+P+++ VSW+ +I GY+ G E + F+ M
Sbjct: 34 DIYVSNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCGKLEDAWCLFTCMK 93
Query: 64 LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLE-------------------S 104
SG + ++ +L A ++ +L +HGL++K G E
Sbjct: 94 RSGSDVDGYSFSRLLKGIASVKRFDLGEQVHGLVIKGGYECNVYVGSSLVDMYAKCERVE 153
Query: 105 DLFEGLKN---PYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTML--TVIRG 159
D FE K P VS NA++AGF+ + + A L + AVTM T
Sbjct: 154 DAFEAFKEISEPNSVSWNALIAGFVQVRDIKTAFWLLGLME----MKAAVTMDAGTFAPL 209
Query: 160 CVALGSRALCEL---IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME-CKD 215
L C L +H +KLGL ++++ N+++ Y+ + A ++F + KD
Sbjct: 210 LTLLDDPMFCNLLKQVHAKVLKLGLQHEITICNAMISSYADCGSVSDAKRVFDGLGGSKD 269
Query: 216 VISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA 275
+ISW M+ F E A ++F +M++ + D L+S + GK LH
Sbjct: 270 LISWNSMIAGFSKHELKESAFELFIQMQRHWVETDIYTYTGLLSACSGEEHQIFGKSLHG 329
Query: 276 QVVLGGLQSELRLSNSIIAMYSK--CGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA 333
V+ GL+ +N++I+MY + G ++ + S+F + K L+SW +II+G+ Q G +
Sbjct: 330 MVIKKGLEQVTSATNALISMYIQFPTGTMEDALSLFESLKSKDLISWNSIITGFAQKGLS 389
Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC 393
+A+ F +R + VD ++L + +LA L++ Q+H +A ++GF V +
Sbjct: 390 EDAVKFFSYLRSSEI-KVDDYAFSALLRSCSDLATLQLGQQIHALATKSGFVSNEFVISS 448
Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
LI YSKCG ++ A F+++ V+WN +I GY +G G+ +L L+ +M
Sbjct: 449 LIVMYSKCGIIESARKCFQQISSKHSTVAWNAMILGYAQHGLGQVSLDLFSQMCNQNVKL 508
Query: 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL 513
D T+ +IL AC H GL +GL + N M K++P EHY VDLL RAG ++ A L
Sbjct: 509 DHVTFTAILTACSHTGLIQEGLELLNLMEPVYKIQPRMEHYAAAVDLLGRAGLVNKAKEL 568
Query: 514 AGKLLEGMGPNIWRALLSGC 533
+ P + + L C
Sbjct: 569 IESMPLNPDPMVLKTFLGVC 588
Score = 140 bits (354), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/295 (29%), Positives = 150/295 (50%)
Query: 171 LIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFE 230
L H IK G I D+ V+N +LD Y L A +F EM +D +SW M+ +
Sbjct: 21 LTHCYAIKCGSISDIYVSNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCG 80
Query: 231 YAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSN 290
DA +F M++S D + L+ A + G+Q+H V+ GG + + + +
Sbjct: 81 KLEDAWCLFTCMKRSGSDVDGYSFSRLLKGIASVKRFDLGEQVHGLVIKGGYECNVYVGS 140
Query: 291 SIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDS 350
S++ MY+KC ++ + F +I+E + VSW A+I+G+VQ + A M + +
Sbjct: 141 SLVDMYAKCERVEDAFEAFKEISEPNSVSWNALIAGFVQVRDIKTAFWLLGLMEMKAAVT 200
Query: 351 VDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIV 410
+D+ T +LT + + Q+H + G ++ N +ISSY+ CG+V A V
Sbjct: 201 MDAGTFAPLLTLLDDPMFCNLLKQVHAKVLKLGLQHEITICNAMISSYADCGSVSDAKRV 260
Query: 411 FEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
F+ +G +D++SWN++I G+ + E+A L+ +M D TY +L+AC
Sbjct: 261 FDGLGGSKDLISWNSMIAGFSKHELKESAFELFIQMQRHWVETDIYTYTGLLSAC 315
>sp|Q9SCT2|PP277_ARATH Pentatricopeptide repeat-containing protein At3g50420
OS=Arabidopsis thaliana GN=PCMP-E85 PE=2 SV=1
Length = 794
Score = 248 bits (634), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 166/572 (29%), Positives = 289/572 (50%), Gaps = 32/572 (5%)
Query: 5 PYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSIN-GFHEKSMKAFSHMM 63
PY ++ L+S Y + G +++A +FD++P +NVVS++ + YS N F + +HM
Sbjct: 132 PYANNNLISMYVRCGSLEQARKVFDKMPHRNVVSYNALYSAYSRNPDFASYAFPLTTHMA 191
Query: 64 LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG--------------------LE 103
+ PNS T ++ A L+++ + S++ ++K G LE
Sbjct: 192 FEYVKPNSSTFTSLVQVCAVLEDVLMGSSLNSQIIKLGYSDNVVVQTSVLGMYSSCGDLE 251
Query: 104 S--DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
S +F+ + N V+ N ++ G + N + ++ F SG+ P T V+ GC
Sbjct: 252 SARRIFDCVNNRDAVAWNTMIVGSLKNDKIEDGLMFFRNMLMSGVDPTQFTYSIVLNGCS 311
Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
LGS +L +LIH I + D+ ++N++LDMY D+ A +F + +++SW
Sbjct: 312 KLGSYSLGKLIHARIIVSDSLADLPLDNALLDMYCSCGDMREAFYVFGRIHNPNLVSWNS 371
Query: 222 MMGLFVDFEYAGDALKIFREM-RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
++ + + A+ ++R + R S D IS A GK LH QV
Sbjct: 372 IISGCSENGFGEQAMLMYRRLLRMSTPRPDEYTFSAAISATAEPERFVHGKLLHGQVTKL 431
Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
G + + + ++++MY K + +S++ VF+ + E+ +V WT +I G+ + G + A+ F
Sbjct: 432 GYERSVFVGTTLLSMYFKNREAESAQKVFDVMKERDVVLWTEMIVGHSRLGNSELAVQFF 491
Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
I+M +EK S D +L S++ A ++A L H +A GF SV L+ Y K
Sbjct: 492 IEMYREKNRS-DGFSLSSVIGACSDMAMLRQGEVFHCLAIRTGFDCVMSVCGALVDMYGK 550
Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
G + A +F + D+ WN+++ Y +G E AL+ + ++ E G +PD+ TYLS
Sbjct: 551 NGKYETAETIFS-LASNPDLKCWNSMLGAYSQHGMVEKALSFFEQILENGFMPDAVTYLS 609
Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
+L AC H G T G ++NQM +E +K +HY C+V+L+++AG + +A L + G
Sbjct: 610 LLAACSHRGSTLQGKFLWNQM-KEQGIKAGFKHYSCMVNLVSKAGLVDEALELIEQSPPG 668
Query: 521 MG-PNIWRALLSGCV----LHVGRFQDAEALR 547
+WR LLS CV L +G + + L+
Sbjct: 669 NNQAELWRTLLSACVNTRNLQIGLYAAEQILK 700
Score = 164 bits (415), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 145/546 (26%), Positives = 247/546 (45%), Gaps = 48/546 (8%)
Query: 5 PYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVS---WSIVIHGYSI-NGFHEKSMKAFS 60
PY ++ L+S Y + +++A +FD++P++N+V+ S V S+ + H + +K S
Sbjct: 22 PYANNNLISMYVRCSSLEQARKVFDKMPQRNIVTLFGLSAVFEYVSMGSSLHSQIIKLGS 81
Query: 61 HMMLSGLLPNSF--TMVGVLVAAAGLQNLELARSIHGLMVKFG----------------- 101
M+ + N ++V + + L+ AR IH L++ G
Sbjct: 82 FQMIFFMPLNEIASSVVELTRKCVSITVLKRARQIHALVLTAGAGAATESPYANNNLISM 141
Query: 102 ------LES--DLFEGLKNPYLVSCNAIVAGFINNKLFQQ-AVLLFNFFRGSGLVPNAVT 152
LE +F+ + + +VS NA+ + + N F A L + PN+ T
Sbjct: 142 YVRCGSLEQARKVFDKMPHRNVVSYNALYSAYSRNPDFASYAFPLTTHMAFEYVKPNSST 201
Query: 153 MLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME 212
++++ C L + ++ IKLG +V V SVL MYS DL++A +IF +
Sbjct: 202 FTSLVQVCAVLEDVLMGSSLNSQIIKLGYSDNVVVQTSVLGMYSSCGDLESARRIFDCVN 261
Query: 213 CKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVN--AILGDLKRG 270
+D ++W M+ + + D L FR M S + D I +N + LG G
Sbjct: 262 NRDAVAWNTMIVGSLKNDKIEDGLMFFRNMLMSGV--DPTQFTYSIVLNGCSKLGSYSLG 319
Query: 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
K +HA++++ ++L L N+++ MY CGD+ + VF +I +LVSW +IISG +N
Sbjct: 320 KLIHARIIVSDSLADLPLDNALLDMYCSCGDMREAFYVFGRIHNPNLVSWNSIISGCSEN 379
Query: 331 GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV 390
G +A+ + ++ + T D T + ++A+ E LHG + G+ R V
Sbjct: 380 GFGEQAMLMYRRLLRMSTPRPDEYTFSAAISATAEPERFVHGKLLHGQVTKLGYERSVFV 439
Query: 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450
L+S Y K + A VF+ M RDVV W +I G+ G+ E A+ + +M
Sbjct: 440 GTTLLSMYFKNREAESAQKVFDVMK-ERDVVLWTEMIVGHSRLGNSELAVQFFIEMYREK 498
Query: 451 EVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
D + S++ AC + G V I + CV+ + G L D
Sbjct: 499 NRSDGFSLSSVIGACSDMAMLRQGEVFHCLAIRTG--------FDCVMSV---CGALVDM 547
Query: 511 SGLAGK 516
G GK
Sbjct: 548 YGKNGK 553
>sp|Q84MA3|PP345_ARATH Pentatricopeptide repeat-containing protein At4g32430,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E40 PE=2
SV=1
Length = 763
Score = 248 bits (632), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 168/554 (30%), Positives = 273/554 (49%), Gaps = 36/554 (6%)
Query: 8 SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
S+ ++ Y K+G+ A +F+ + + +VVSW+ ++ G+ N + ++ M +G+
Sbjct: 114 SNAVMGMYRKAGRFDNALCIFENLVDPDVVSWNTILSGFDDN---QIALNFVVRMKSAGV 170
Query: 68 LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL---------------FEGLKN 112
+ ++FT L G + L + +VK GLESDL F G +
Sbjct: 171 VFDAFTYSTALSFCVGSEGFLLGLQLQSTVVKTGLESDLVVGNSFITMYSRSGSFRGARR 230
Query: 113 PY-------LVSCNAIVAGFINNKLFQ-QAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
+ ++S N++++G F +AV++F G+ + V+ +VI C
Sbjct: 231 VFDEMSFKDMISWNSLLSGLSQEGTFGFEAVVIFRDMMREGVELDHVSFTSVITTCCHET 290
Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
L IHGL IK G + V N ++ YS L+A +F +M ++V+SWT M+
Sbjct: 291 DLKLARQIHGLCIKRGYESLLEVGNILMSRYSKCGVLEAVKSVFHQMSERNVVSWTTMIS 350
Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
D DA+ IF MR + + V + LI+ +K G ++H + G S
Sbjct: 351 SNKD-----DAVSIFLNMRFDGVYPNEVTFVGLINAVKCNEQIKEGLKIHGLCIKTGFVS 405
Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
E + NS I +Y+K L+ ++ F IT + ++SW A+ISG+ QNG + EAL F+
Sbjct: 406 EPSVGNSFITLYAKFEALEDAKKAFEDITFREIISWNAMISGFAQNGFSHEALKMFLSAA 465
Query: 345 QEKTDSVDSITLVSILTA--SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402
E + T S+L A E +++ + H + G V + L+ Y+K G
Sbjct: 466 AETMP--NEYTFGSVLNAIAFAEDISVKQGQRCHAHLLKLGLNSCPVVSSALLDMYAKRG 523
Query: 403 NVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462
N+D + VF EM V W +II Y +G ET + L+HKM + PD T+LS+L
Sbjct: 524 NIDESEKVFNEMSQKNQFV-WTSIISAYSSHGDFETVMNLFHKMIKENVAPDLVTFLSVL 582
Query: 463 NACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMG 522
AC G+ + G IFN MIE ++PS EHY C+VD+L RAG L +A L ++ G G
Sbjct: 583 TACNRKGMVDKGYEIFNMMIEVYNLEPSHEHYSCMVDMLGRAGRLKEAEELMSEVPGGPG 642
Query: 523 PNIWRALLSGCVLH 536
++ +++L C LH
Sbjct: 643 ESMLQSMLGSCRLH 656
Score = 143 bits (361), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 115/393 (29%), Positives = 188/393 (47%), Gaps = 31/393 (7%)
Query: 149 NAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIF 208
+ VT+ ++ C R C+ IHG + G V V+N+V+ MY D A+ IF
Sbjct: 77 DEVTLCLALKACRGDLKRG-CQ-IHGFSTTSGFTSFVCVSNAVMGMYRKAGRFDNALCIF 134
Query: 209 REMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLK 268
+ DV+SW ++ F D + AL M+ + ++ D +S
Sbjct: 135 ENLVDPDVVSWNTILSGFDDNQI---ALNFVVRMKSAGVVFDAFTYSTALSFCVGSEGFL 191
Query: 269 RGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYV 328
G QL + VV GL+S+L + NS I MYS+ G +R VF++++ K ++SW +++SG
Sbjct: 192 LGLQLQSTVVKTGLESDLVVGNSFITMYSRSGSFRGARRVFDEMSFKDMISWNSLLSGLS 251
Query: 329 QNGC-AREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRY 387
Q G EA+ F M +E + +D ++ S++T L++ Q+HG+ + G+
Sbjct: 252 QEGTFGFEAVVIFRDMMREGVE-LDHVSFTSVITTCCHETDLKLARQIHGLCIKRGYESL 310
Query: 388 RSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMT 447
V N L+S YSKCG ++ VF +M R+VVSW T+I + + + A++++ M
Sbjct: 311 LEVGNILMSRYSKCGVLEAVKSVFHQMS-ERNVVSWTTMI-----SSNKDDAVSIFLNMR 364
Query: 448 ETGEVPDSSTYLSILNA--CGHA---GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLA 502
G P+ T++ ++NA C GL GL I + E V S + L A
Sbjct: 365 FDGVYPNEVTFVGLINAVKCNEQIKEGLKIHGLCIKTGFVSEPSVGNS------FITLYA 418
Query: 503 RAGCLSDASGLAGKLLEGMGPN---IWRALLSG 532
+ L DA K E + W A++SG
Sbjct: 419 KFEALEDAK----KAFEDITFREIISWNAMISG 447
Score = 55.8 bits (133), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/233 (20%), Positives = 103/233 (44%), Gaps = 31/233 (13%)
Query: 4 DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
+P + ++ Y K +++A+ F++I + ++SW+ +I G++ NGF +++K F
Sbjct: 406 EPSVGNSFITLYAKFEALEDAKKAFEDITFREIISWNAMISGFAQNGFSHEALKMFLSAA 465
Query: 64 LSGLLPNSFTMVGVLVAAAGLQNLEL--ARSIHGLMVKFGLES----------------- 104
+ +PN +T VL A A +++ + + H ++K GL S
Sbjct: 466 -AETMPNEYTFGSVLNAIAFAEDISVKQGQRCHAHLLKLGLNSCPVVSSALLDMYAKRGN 524
Query: 105 -----DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
+F + +I++ + ++ F+ + LF+ + P+ VT L+V+
Sbjct: 525 IDESEKVFNEMSQKNQFVWTSIISAYSSHGDFETVMNLFHKMIKENVAPDLVTFLSVLTA 584
Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME 212
C G + G I ++++V + YSC++D+ +E E
Sbjct: 585 CNRKGM-----VDKGYEI-FNMMIEVYNLEPSHEHYSCMVDMLGRAGRLKEAE 631
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 246 bits (628), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 145/535 (27%), Positives = 257/535 (48%), Gaps = 71/535 (13%)
Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
F+ LK+P +++ +++ F + LF +A+ F R SG P+ +V++ C +
Sbjct: 62 FKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDL 121
Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMY------------------------------- 195
E +HG ++LG+ D+ N++++MY
Sbjct: 122 RFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDV 181
Query: 196 ---SCLMD--LDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICD 250
+C+M +D+ ++F M KDV+S+ ++ + DAL++ REM + + D
Sbjct: 182 KAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPD 241
Query: 251 TVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFN 310
+ L +++ + + D+ +GK++H V+ G+ S++ + +S++ MY+K ++ S VF+
Sbjct: 242 SFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFS 301
Query: 311 QITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALE 370
++ + +SW ++++GYVQNG EAL F +M K ++ S++ A LA L
Sbjct: 302 RLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKP-GAVAFSSVIPACAHLATLH 360
Query: 371 ICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGY 430
+ QLHG GF + + L+ YSKCGN+ A +F+ M L D VSW II G+
Sbjct: 361 LGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVL-DEVSWTAIIMGH 419
Query: 431 GVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPS 490
++GHG A++L+ +M G P+ ++++L AC H GL ++ FN M + +
Sbjct: 420 ALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQE 479
Query: 491 QEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHV------------- 537
EHY V DLL RAG L +A K+ ++W LLS C +H
Sbjct: 480 LEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIF 539
Query: 538 --------------------GRFQDAEALRSGSQKKGIIKIPGISFLNSTSRDFG 572
GR+++ LR +KKG+ K P S++ ++ G
Sbjct: 540 TVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHG 594
Score = 142 bits (359), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 94/359 (26%), Positives = 190/359 (52%), Gaps = 16/359 (4%)
Query: 97 MVKFGLES--DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTML 154
++ FG++S +FE + +VS N I+AG+ + +++ A+ + + L P++ T+
Sbjct: 187 IMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLS 246
Query: 155 TVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
+V+ + IHG I+ G+ DV + +S++DMY+ ++ + ++F + C+
Sbjct: 247 SVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCR 306
Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
D ISW ++ +V +AL++FR+M +++ VA ++I A L L GKQLH
Sbjct: 307 DGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLH 366
Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
V+ GG S + ++++++ MYSKCG++ ++R +F+++ VSWTAII G+ +G
Sbjct: 367 GYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGH 426
Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEIC-------LQLHGIAFEAGFPRY 387
EA++ F +M+++ + + V++LTA + ++ +++G+ E Y
Sbjct: 427 EAVSLFEEMKRQGVKP-NQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQE--LEHY 483
Query: 388 RSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM 446
+V + L + G ++ AY +M W+T++ V+ + E A + K+
Sbjct: 484 AAVADLL----GRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKI 538
Score = 120 bits (300), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 89/391 (22%), Positives = 193/391 (49%), Gaps = 38/391 (9%)
Query: 21 IKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVA 80
I +F+ +P K+VVS++ +I GY+ +G +E +++ M + L P+SFT+ VL
Sbjct: 192 IDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPI 251
Query: 81 AAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPYL--------------------VSC 118
+ ++ + IHG +++ G++SD++ G L + Y +S
Sbjct: 252 FSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISW 311
Query: 119 NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIK 178
N++VAG++ N + +A+ LF + + P AV +VI C L + L + +HG ++
Sbjct: 312 NSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLR 371
Query: 179 LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKI 238
G ++ + ++++DMYS ++ AA +IF M D +SWT ++ + +A+ +
Sbjct: 372 GGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSL 431
Query: 239 FREMRKSRIICDTVALLNLISVNAILGDLKRG-KQLHAQVVLGGLQSELRLSNSIIAMYS 297
F EM++ + + VA + +++ + +G + ++ + GL EL ++ +
Sbjct: 432 FEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLG 491
Query: 298 KCGDLDSSRSVFNQI-TEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDS--- 353
+ G L+ + + +++ E + W+ ++S C+ + + EK +VDS
Sbjct: 492 RAGKLEEAYNFISKMCVEPTGSVWSTLLS-----SCSVHKNLELAEKVAEKIFTVDSENM 546
Query: 354 ---ITLVSILTASG---ELAALEICLQLHGI 378
+ + ++ ++G E+A L + ++ G+
Sbjct: 547 GAYVLMCNMYASNGRWKEMAKLRLRMRKKGL 577
Score = 110 bits (274), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 105/442 (23%), Positives = 194/442 (43%), Gaps = 52/442 (11%)
Query: 155 TVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
T+I+ + S++ + +H I+ + S + V+ +Y+ L L A+ +F+ ++
Sbjct: 10 TLIKNPTRIKSKSQAKQLHAQFIRTQSLSHTSAS-IVISIYTNLKLLHEALLLFKTLKSP 68
Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
V++W ++ F D AL F EMR S D +++ ++ DL+ G+ +H
Sbjct: 69 PVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVH 128
Query: 275 AQVVLGGLQSELRLSNSIIAMYSK-----------------------CGD---------- 301
+V G+ +L N+++ MY+K GD
Sbjct: 129 GFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIM 188
Query: 302 ---LDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD-SVDSITLV 357
+DS R VF + K +VS+ II+GY Q+G +AL +M TD DS TL
Sbjct: 189 PFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREM--GTTDLKPDSFTLS 246
Query: 358 SILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFL 417
S+L E + ++HG G + + L+ Y+K ++ + VF + +
Sbjct: 247 SVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRL-YC 305
Query: 418 RDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVI 477
RD +SWN+++ GY NG AL L+ +M P + + S++ AC H + G +
Sbjct: 306 RDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQL 365
Query: 478 FNQMIE----ENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGC 533
++ N S +VD+ ++ G + A + + + + W A++ G
Sbjct: 366 HGYVLRGGFGSNIFIAS-----ALVDMYSKCGNIKAARKIFDR-MNVLDEVSWTAIIMGH 419
Query: 534 VLHVGRFQDAEALRSGSQKKGI 555
LH G +A +L +++G+
Sbjct: 420 ALH-GHGHEAVSLFEEMKRQGV 440
Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 87/183 (47%), Gaps = 22/183 (12%)
Query: 4 DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
D Y S L+ Y KS +I+++E +F + ++ +SW+ ++ GY NG + ++++ F M+
Sbjct: 276 DVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMV 335
Query: 64 LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLKNPYL------ 115
+ + P + V+ A A L L L + +HG +++ G S++F L + Y
Sbjct: 336 TAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIK 395
Query: 116 --------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
VS AI+ G + +AV LF + G+ PN V + V+ C
Sbjct: 396 AARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACS 455
Query: 162 ALG 164
+G
Sbjct: 456 HVG 458
Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 8 SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
+S L+ Y K G IK A +FD + + VSW+ +I G++++G +++ F M G+
Sbjct: 381 ASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGV 440
Query: 68 LPNSFTMVGVLVAAAGLQNLELARSIHGLMVK-FGLESDL 106
PN V VL A + + ++ A M K +GL +L
Sbjct: 441 KPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQEL 480
>sp|Q9FXA9|PPR83_ARATH Putative pentatricopeptide repeat-containing protein At1g56570
OS=Arabidopsis thaliana GN=PCMP-E64 PE=3 SV=1
Length = 611
Score = 246 bits (628), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 139/435 (31%), Positives = 241/435 (55%), Gaps = 9/435 (2%)
Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
LF+ + + +V+ A++ G+ ++ +A F+ G PN T+ +V++ C +
Sbjct: 67 LFDEMPDRDVVAWTAMITGYASSNYNARAWECFHEMVKQGTSPNEFTLSSVLKSCRNMKV 126
Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMY-SCLMDLDAAIQIFREMECKDVISWTRMMG 224
A L+HG+ +KLG+ + V+N++++MY +C + ++AA IFR+++ K+ ++WT
Sbjct: 127 LAYGALVHGVVVKLGMEGSLYVDNAMMNMYATCSVTMEAACLIFRDIKVKNDVTWTT--- 183
Query: 225 LFVDFEYAGDA---LKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
L F + GD LK++++M + + +A + + GKQ+HA V+ G
Sbjct: 184 LITGFTHLGDGIGGLKMYKQMLLENAEVTPYCITIAVRASASIDSVTTGKQIHASVIKRG 243
Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
QS L + NSI+ +Y +CG L ++ F+++ +K L++W +IS ++ + EAL F
Sbjct: 244 FQSNLPVMNSILDLYCRCGYLSEAKHYFHEMEDKDLITWNTLISE-LERSDSSEALLMFQ 302
Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
+ + + + T S++ A +AAL QLHG F GF + + N LI Y+KC
Sbjct: 303 RF-ESQGFVPNCYTFTSLVAACANIAALNCGQQLHGRIFRRGFNKNVELANALIDMYAKC 361
Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
GN+ + VF E+ R++VSW +++ GYG +G+G A+ L+ KM +G PD ++++
Sbjct: 362 GNIPDSQRVFGEIVDRRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMAV 421
Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
L+AC HAGL GL FN M E + P ++ Y CVVDLL RAG + +A L ++
Sbjct: 422 LSACRHAGLVEKGLKYFNVMESEYGINPDRDIYNCVVDLLGRAGKIGEAYELVERMPFKP 481
Query: 522 GPNIWRALLSGCVLH 536
+ W A+L C H
Sbjct: 482 DESTWGAILGACKAH 496
Score = 192 bits (489), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 126/462 (27%), Positives = 227/462 (49%), Gaps = 48/462 (10%)
Query: 5 PYNSSK-------LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMK 57
PY K L+ +YF+ G ++EA +LFDE+P+++VV+W+ +I GY+ + ++ ++ +
Sbjct: 38 PYKPKKHHILATNLIVSYFEKGLVEEARSLFDEMPDRDVVAWTAMITGYASSNYNARAWE 97
Query: 58 AFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------- 106
F M+ G PN FT+ VL + ++ L +HG++VK G+E L
Sbjct: 98 CFHEMVKQGTSPNEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNAMMNMYA 157
Query: 107 ------------FEGLKNPYLVSCNAIVAGFIN-------NKLFQQAVLLFNFFRGSGLV 147
F +K V+ ++ GF + K+++Q +L + +
Sbjct: 158 TCSVTMEAACLIFRDIKVKNDVTWTTLITGFTHLGDGIGGLKMYKQMLL-----ENAEVT 212
Query: 148 PNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQI 207
P +T+ +R ++ S + IH IK G ++ V NS+LD+Y L A
Sbjct: 213 PYCITI--AVRASASIDSVTTGKQIHASVIKRGFQSNLPVMNSILDLYCRCGYLSEAKHY 270
Query: 208 FREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDL 267
F EME KD+I+W ++ ++ + +AL +F+ + + +L++ A + L
Sbjct: 271 FHEMEDKDLITWNTLISE-LERSDSSEALLMFQRFESQGFVPNCYTFTSLVAACANIAAL 329
Query: 268 KRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE-KSLVSWTAIISG 326
G+QLH ++ G + L+N++I MY+KCG++ S+ VF +I + ++LVSWT+++ G
Sbjct: 330 NCGQQLHGRIFRRGFNKNVELANALIDMYAKCGNIPDSQRVFGEIVDRRNLVSWTSMMIG 389
Query: 327 YVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGI-AFEAGFP 385
Y +G EA+ F KM D I +++L+A +E L+ + E G
Sbjct: 390 YGSHGYGAEAVELFDKMVSSGIRP-DRIVFMAVLSACRHAGLVEKGLKYFNVMESEYGIN 448
Query: 386 RYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
R + NC++ + G + AY + E M F D +W I+
Sbjct: 449 PDRDIYNCVVDLLGRAGKIGEAYELVERMPFKPDESTWGAIL 490
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 126/261 (48%), Gaps = 11/261 (4%)
Query: 288 LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347
L+ ++I Y + G ++ +RS+F+++ ++ +V+WTA+I+GY + A F +M ++
Sbjct: 47 LATNLIVSYFEKGLVEEARSLFDEMPDRDVVAWTAMITGYASSNYNARAWECFHEMVKQG 106
Query: 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG-NVDL 406
T S + TL S+L + + L +HG+ + G V N +++ Y+ C ++
Sbjct: 107 T-SPNEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNAMMNMYATCSVTMEA 165
Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM-TETGEVPDSSTYLSILNAC 465
A ++F ++ D V+W T+I G+ G G L +Y +M E EV +++ +
Sbjct: 166 ACLIFRDIKVKND-VTWTTLITGFTHLGDGIGGLKMYKQMLLENAEVTPYCITIAVRASA 224
Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI 525
+T G I +I+ + + ++DL R G LS+A + +E
Sbjct: 225 SIDSVTT-GKQIHASVIKRG-FQSNLPVMNSILDLYCRCGYLSEAKHYFHE-MEDKDLIT 281
Query: 526 WRALLSGCVLHVGRFQDAEAL 546
W L+S + R +EAL
Sbjct: 282 WNTLIS----ELERSDSSEAL 298
>sp|Q9MA95|PP214_ARATH Putative pentatricopeptide repeat-containing protein At3g05240
OS=Arabidopsis thaliana GN=PCMP-E82 PE=3 SV=2
Length = 565
Score = 245 bits (625), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 142/462 (30%), Positives = 247/462 (53%), Gaps = 28/462 (6%)
Query: 86 NLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSG 145
NL ARS+ FE + P + N+++ G+ N+ +A++ + G
Sbjct: 56 NLSYARSV-------------FESIDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKG 102
Query: 146 LVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAI 205
P+ T V++ C L +HG +K G +++ V+ +L MY C +++ +
Sbjct: 103 YSPDYFTFPYVLKACSGLRDIQFGSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGL 162
Query: 206 QIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILG 265
++F ++ +V++W ++ FV+ DA++ FREM+ + + + +++L+
Sbjct: 163 RVFEDIPQWNVVAWGSLISGFVNNNRFSDAIEAFREMQSNGVKANETIMVDLLVACGRCK 222
Query: 266 DLKRGKQLHAQVVLGGL------QSELR----LSNSIIAMYSKCGDLDSSRSVFNQITEK 315
D+ GK H L GL QS++ L+ S+I MY+KCGDL ++R +F+ + E+
Sbjct: 223 DIVTGKWFHG--FLQGLGFDPYFQSKVGFNVILATSLIDMYAKCGDLRTARYLFDGMPER 280
Query: 316 SLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQL 375
+LVSW +II+GY QNG A EAL F+ M + D +T +S++ AS ++ +
Sbjct: 281 TLVSWNSIITGYSQNGDAEEALCMFLDMLDLGI-APDKVTFLSVIRASMIQGCSQLGQSI 339
Query: 376 HGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGH 435
H + GF + ++ L++ Y+K G+ + A FE++ +D ++W +I G +GH
Sbjct: 340 HAYVSKTGFVKDAAIVCALVNMYAKTGDAESAKKAFEDLE-KKDTIAWTVVIIGLASHGH 398
Query: 436 GETALALYHKMTETGE-VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY 494
G AL+++ +M E G PD TYL +L AC H GL +G F +M + + ++P+ EHY
Sbjct: 399 GNEALSIFQRMQEKGNATPDGITYLGVLYACSHIGLVEEGQRYFAEMRDLHGLEPTVEHY 458
Query: 495 GCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
GC+VD+L+RAG +A L + NIW ALL+GC +H
Sbjct: 459 GCMVDILSRAGRFEEAERLVKTMPVKPNVNIWGALLNGCDIH 500
Score = 155 bits (393), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 121/495 (24%), Positives = 225/495 (45%), Gaps = 44/495 (8%)
Query: 24 AENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAG 83
A ++F+ I +V W+ +I GYS + +K++ + M+ G P+ FT VL A +G
Sbjct: 60 ARSVFESIDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSG 119
Query: 84 LQNLELARSIHGLMVKFGLESDL----------------------FEGLKNPYLVSCNAI 121
L++++ +HG +VK G E ++ FE + +V+ ++
Sbjct: 120 LRDIQFGSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSL 179
Query: 122 VAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGL 181
++GF+NN F A+ F + +G+ N M+ ++ C + HG LG
Sbjct: 180 ISGFVNNNRFSDAIEAFREMQSNGVKANETIMVDLLVACGRCKDIVTGKWFHGFLQGLGF 239
Query: 182 I--------LDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAG 233
+V + S++DMY+ DL A +F M + ++SW ++ + A
Sbjct: 240 DPYFQSKVGFNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAE 299
Query: 234 DALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSII 293
+AL +F +M I D V L++I + I G + G+ +HA V G + + +++
Sbjct: 300 EALCMFLDMLDLGIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCALV 359
Query: 294 AMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDS 353
MY+K GD +S++ F + +K ++WT +I G +G EAL+ F +M+++ + D
Sbjct: 360 NMYAKTGDAESAKKAFEDLEKKDTIAWTVVIIGLASHGHGNEALSIFQRMQEKGNATPDG 419
Query: 354 ITLVSILTASGELAALEICLQ-------LHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL 406
IT + +L A + +E + LHG+ E Y C++ S+ G +
Sbjct: 420 ITYLGVLYACSHIGLVEEGQRYFAEMRDLHGL--EPTVEHY----GCMVDILSRAGRFEE 473
Query: 407 AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466
A + + M +V W ++ G ++ + E + + E E+ S Y+ + N
Sbjct: 474 AERLVKTMPVKPNVNIWGALLNGCDIHENLELTDRIRSMVAEPEEL-GSGIYVLLSNIYA 532
Query: 467 HAGLTNDGLVIFNQM 481
AG D +I M
Sbjct: 533 KAGRWADVKLIRESM 547
Score = 140 bits (353), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 114/412 (27%), Positives = 200/412 (48%), Gaps = 18/412 (4%)
Query: 166 RALCEL--IHGLTIKLGLILDVSVNNSVLDMYSC---LMDLDAAIQIFREMECKDVISWT 220
R+L EL +HGL IK +I +V + ++D + M+L A +F ++C V W
Sbjct: 17 RSLVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDCPSVYIWN 76
Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
M+ + + AL ++EM + D ++ + L D++ G +H VV
Sbjct: 77 SMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSCVHGFVVKT 136
Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
G + + +S ++ MY CG+++ VF I + ++V+W ++ISG+V N +A+ F
Sbjct: 137 GFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNNRFSDAIEAF 196
Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGF-PRYRS-------VQN 392
+M+ + ++I +V +L A G + HG GF P ++S +
Sbjct: 197 REMQSNGVKANETI-MVDLLVACGRCKDIVTGKWFHGFLQGLGFDPYFQSKVGFNVILAT 255
Query: 393 CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV 452
LI Y+KCG++ A +F+ M R +VSWN+II GY NG E AL ++ M + G
Sbjct: 256 SLIDMYAKCGDLRTARYLFDGMP-ERTLVSWNSIITGYSQNGDAEEALCMFLDMLDLGIA 314
Query: 453 PDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASG 512
PD T+LS++ A G + G I + + VK + +V++ A+ G ++++
Sbjct: 315 PDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAA-IVCALVNMYAKTG-DAESAK 372
Query: 513 LAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFL 564
A + LE W ++ G H G +A ++ Q+KG GI++L
Sbjct: 373 KAFEDLEKKDTIAWTVVIIGLASH-GHGNEALSIFQRMQEKGNATPDGITYL 423
Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 88/357 (24%), Positives = 171/357 (47%), Gaps = 33/357 (9%)
Query: 3 IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
++ Y S+ LL Y G++ +F++IP+ NVV+W +I G+ N +++AF M
Sbjct: 140 VNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNNRFSDAIEAFREM 199
Query: 63 MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES------------------ 104
+G+ N MV +LVA +++ + HG + G +
Sbjct: 200 QSNGVKANETIMVDLLVACGRCKDIVTGKWFHGFLQGLGFDPYFQSKVGFNVILATSLID 259
Query: 105 ------------DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVT 152
LF+G+ LVS N+I+ G+ N ++A+ +F G+ P+ VT
Sbjct: 260 MYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMFLDMLDLGIAPDKVT 319
Query: 153 MLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME 212
L+VIR + G L + IH K G + D ++ ++++MY+ D ++A + F ++E
Sbjct: 320 FLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCALVNMYAKTGDAESAKKAFEDLE 379
Query: 213 CKDVISWTRMMGLFVDFEYAGDALKIFREMR-KSRIICDTVALLNLISVNAILGDLKRGK 271
KD I+WT ++ + +AL IF+ M+ K D + L ++ + +G ++ G+
Sbjct: 380 KKDTIAWTVVIIGLASHGHGNEALSIFQRMQEKGNATPDGITYLGVLYACSHIGLVEEGQ 439
Query: 272 QLHAQVV-LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVS-WTAIISG 326
+ A++ L GL+ + ++ + S+ G + + + + K V+ W A+++G
Sbjct: 440 RYFAEMRDLHGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMPVKPNVNIWGALLNG 496
>sp|Q9C507|PP111_ARATH Putative pentatricopeptide repeat-containing protein At1g69350,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E66 PE=3
SV=1
Length = 787
Score = 245 bits (625), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 156/556 (28%), Positives = 295/556 (53%), Gaps = 28/556 (5%)
Query: 4 DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
D + LL Y ++G + +AE +FD +P +++V+WS ++ NG K+++ F M+
Sbjct: 135 DAVIETSLLCMYGQTGNLSDAEKVFDGMPVRDLVAWSTLVSSCLENGEVVKALRMFKCMV 194
Query: 64 LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK--FGLESDL--------------- 106
G+ P++ TM+ V+ A L L +ARS+HG + + F L+ L
Sbjct: 195 DDGVEPDAVTMISVVEGCAELGCLRIARSVHGQITRKMFDLDETLCNSLLTMYSKCGDLL 254
Query: 107 -----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
FE + VS A+++ + + ++A+ F+ SG+ PN VT+ +V+ C
Sbjct: 255 SSERIFEKIAKKNAVSWTAMISSYNRGEFSEKALRSFSEMIKSGIEPNLVTLYSVLSSCG 314
Query: 162 ALGSRALCELIHGLTIKLGLILDV-SVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
+G + +HG ++ L + S++ +++++Y+ L + R + +++++W
Sbjct: 315 LIGLIREGKSVHGFAVRRELDPNYESLSLALVELYAECGKLSDCETVLRVVSDRNIVAWN 374
Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
++ L+ AL +FR+M RI D L + IS G + GKQ+H V+
Sbjct: 375 SLISLYAHRGMVIQALGLFRQMVTQRIKPDAFTLASSISACENAGLVPLGKQIHGHVIRT 434
Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
+ E + NS+I MYSK G +DS+ +VFNQI +S+V+W +++ G+ QNG + EA++ F
Sbjct: 435 DVSDEF-VQNSLIDMYSKSGSVDSASTVFNQIKHRSVVTWNSMLCGFSQNGNSVEAISLF 493
Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
M + ++ +T ++++ A + +LE +H +G + LI Y+K
Sbjct: 494 DYMYHSYLE-MNEVTFLAVIQACSSIGSLEKGKWVHHKLIISGLKDLFT-DTALIDMYAK 551
Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
CG+++ A VF M V +++I YG++G +A++ +++M E+G P+ +++
Sbjct: 552 CGDLNAAETVFRAMSSRSIVSW-SSMINAYGMHGRIGSAISTFNQMVESGTKPNEVVFMN 610
Query: 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG 520
+L+ACGH+G +G FN M + V P+ EH+ C +DLL+R+G L +A ++
Sbjct: 611 VLSACGHSGSVEEGKYYFNLM-KSFGVSPNSEHFACFIDLLSRSGDLKEAYRTIKEMPFL 669
Query: 521 MGPNIWRALLSGCVLH 536
++W +L++GC +H
Sbjct: 670 ADASVWGSLVNGCRIH 685
Score = 195 bits (496), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 138/507 (27%), Positives = 251/507 (49%), Gaps = 35/507 (6%)
Query: 4 DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
DP +KL+ +Y G + +F+ P + + ++I + ++ + ++
Sbjct: 33 DPLPVTKLIESYAFMGSPDSSRLVFEAFPYPDSFMYGVLIKCNVWCHLLDAAIDLYHRLV 92
Query: 64 LSGLLPNSFTMVGVLVAAAG-LQNLELARSIHGLMVKFGLESD----------------- 105
+ F VL A AG ++L + +HG ++K G++ D
Sbjct: 93 SETTQISKFVFPSVLRACAGSREHLSVGGKVHGRIIKGGVDDDAVIETSLLCMYGQTGNL 152
Query: 106 -----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
+F+G+ LV+ + +V+ + N +A+ +F G+ P+AVTM++V+ GC
Sbjct: 153 SDAEKVFDGMPVRDLVAWSTLVSSCLENGEVVKALRMFKCMVDDGVEPDAVTMISVVEGC 212
Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
LG + +HG + LD ++ NS+L MYS DL ++ +IF ++ K+ +SWT
Sbjct: 213 AELGCLRIARSVHGQITRKMFDLDETLCNSLLTMYSKCGDLLSSERIFEKIAKKNAVSWT 272
Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
M+ + E++ AL+ F EM KS I + V L +++S ++G ++ GK +H V
Sbjct: 273 AMISSYNRGEFSEKALRSFSEMIKSGIEPNLVTLYSVLSSCGLIGLIREGKSVHGFAVRR 332
Query: 281 GLQSELR-LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
L LS +++ +Y++CG L +V ++++++V+W ++IS Y G +AL
Sbjct: 333 ELDPNYESLSLALVELYAECGKLSDCETVLRVVSDRNIVAWNSLISLYAHRGMVIQALGL 392
Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
F +M ++ D+ TL S ++A + + Q+HG VQN LI YS
Sbjct: 393 FRQMVTQRIKP-DAFTLASSISACENAGLVPLGKQIHGHVIRTDVSD-EFVQNSLIDMYS 450
Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALAL----YHKMTETGEVPDS 455
K G+VD A VF ++ R VV+WN+++ G+ NG+ A++L YH E EV
Sbjct: 451 KSGSVDSASTVFNQIKH-RSVVTWNSMLCGFSQNGNSVEAISLFDYMYHSYLEMNEV--- 506
Query: 456 STYLSILNACGHAGLTNDGLVIFNQMI 482
T+L+++ AC G G + +++I
Sbjct: 507 -TFLAVIQACSSIGSLEKGKWVHHKLI 532
Score = 176 bits (446), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 127/485 (26%), Positives = 251/485 (51%), Gaps = 30/485 (6%)
Query: 3 IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
+D + LL+ Y K G + +E +F++I +KN VSW+ +I Y+ F EK++++FS M
Sbjct: 235 LDETLCNSLLTMYSKCGDLLSSERIFEKIAKKNAVSWTAMISSYNRGEFSEKALRSFSEM 294
Query: 63 MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGL------------ 110
+ SG+ PN T+ VL + + + +S+HG V+ L+ + +E L
Sbjct: 295 IKSGIEPNLVTLYSVLSSCGLIGLIREGKSVHGFAVRRELDPN-YESLSLALVELYAECG 353
Query: 111 ------------KNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
+ +V+ N++++ + + + QA+ LF + P+A T+ + I
Sbjct: 354 KLSDCETVLRVVSDRNIVAWNSLISLYAHRGMVIQALGLFRQMVTQRIKPDAFTLASSIS 413
Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
C G L + IHG I+ + D V NS++DMYS +D+A +F +++ + V++
Sbjct: 414 ACENAGLVPLGKQIHGHVIRTD-VSDEFVQNSLIDMYSKSGSVDSASTVFNQIKHRSVVT 472
Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
W M+ F + +A+ +F M S + + V L +I + +G L++GK +H +++
Sbjct: 473 WNSMLCGFSQNGNSVEAISLFDYMYHSYLEMNEVTFLAVIQACSSIGSLEKGKWVHHKLI 532
Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
+ GL+ +L ++I MY+KCGDL+++ +VF ++ +S+VSW+++I+ Y +G A++
Sbjct: 533 ISGLK-DLFTDTALIDMYAKCGDLNAAETVFRAMSSRSIVSWSSMINAYGMHGRIGSAIS 591
Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
F +M + T + + +++L+A G ++E + G C I
Sbjct: 592 TFNQMVESGTKP-NEVVFMNVLSACGHSGSVEEGKYYFNLMKSFGVSPNSEHFACFIDLL 650
Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
S+ G++ AY +EM FL D W +++ G ++ + A+ + +++ V D + Y
Sbjct: 651 SRSGDLKEAYRTIKEMPFLADASVWGSLVNGCRIHQKMDIIKAIKNDLSDI--VTDDTGY 708
Query: 459 LSILN 463
++L+
Sbjct: 709 YTLLS 713
Score = 152 bits (384), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 119/438 (27%), Positives = 211/438 (48%), Gaps = 25/438 (5%)
Query: 106 LFEGLKNP------YLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
+FE P L+ CN L A+ L++ + +V+R
Sbjct: 56 VFEAFPYPDSFMYGVLIKCNVWC------HLLDAAIDLYHRLVSETTQISKFVFPSVLRA 109
Query: 160 CVALGSRALCEL---IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV 216
C GSR + +HG IK G+ D + S+L MY +L A ++F M +D+
Sbjct: 110 CA--GSREHLSVGGKVHGRIIKGGVDDDAVIETSLLCMYGQTGNLSDAEKVFDGMPVRDL 167
Query: 217 ISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQ 276
++W+ ++ ++ AL++F+ M + D V +++++ A LG L+ + +H Q
Sbjct: 168 VAWSTLVSSCLENGEVVKALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARSVHGQ 227
Query: 277 VVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
+ + L NS++ MYSKCGDL SS +F +I +K+ VSWTA+IS Y + + +A
Sbjct: 228 ITRKMFDLDETLCNSLLTMYSKCGDLLSSERIFEKIAKKNAVSWTAMISSYNRGEFSEKA 287
Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGF-PRYRSVQNCLI 395
L F +M + + + +TL S+L++ G + + +HG A P Y S+ L+
Sbjct: 288 LRSFSEMIKSGIEP-NLVTLYSVLSSCGLIGLIREGKSVHGFAVRRELDPNYESLSLALV 346
Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
Y++CG + V + R++V+WN++I Y G AL L+ +M PD+
Sbjct: 347 ELYAECGKLSDCETVLRVVSD-RNIVAWNSLISLYAHRGMVIQALGLFRQMVTQRIKPDA 405
Query: 456 STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEH-YGCVVDLLARAGCLSDASGLA 514
T S ++AC +AGL G I +I + S E ++D+ +++G + AS +
Sbjct: 406 FTLASSISACENAGLVPLGKQIHGHVI---RTDVSDEFVQNSLIDMYSKSGSVDSASTVF 462
Query: 515 GKLLEGMGPNIWRALLSG 532
+ ++ W ++L G
Sbjct: 463 NQ-IKHRSVVTWNSMLCG 479
>sp|Q7XJN6|PP197_ARATH Pentatricopeptide repeat-containing protein At2g40720
OS=Arabidopsis thaliana GN=PCMP-E26 PE=3 SV=1
Length = 860
Score = 244 bits (624), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 172/564 (30%), Positives = 288/564 (51%), Gaps = 39/564 (6%)
Query: 4 DPYNSSKLLSNYFKSGKIKEAENLFDEIPEK-NVVSWSIVIHGYSINGFHEKSMKAFSHM 62
D + + L+ YFK G +A +F EI +K NVV W+++I G+ +G E S+ +
Sbjct: 204 DSFLKTALIDMYFKFGLSIDAWRVFVEIEDKSNVVLWNVMIVGFGGSGICESSLDLY--- 260
Query: 63 MLSG-----LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------ 105
ML+ L+ SFT G L A + +N R IH +VK GL +D
Sbjct: 261 MLAKNNSVKLVSTSFT--GALGACSQSENSGFGRQIHCDVVKMGLHNDPYVCTSLLSMYS 318
Query: 106 ----------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLT 155
+F + + L NA+VA + N A+ LF F R ++P++ T+
Sbjct: 319 KCGMVGEAETVFSCVVDKRLEIWNAMVAAYAENDYGYSALDLFGFMRQKSVLPDSFTLSN 378
Query: 156 VIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYS-CLMDLDAAIQIFREMECK 214
VI C LG + +H K + ++ +++L +YS C D DA + +F+ ME K
Sbjct: 379 VISCCSVLGLYNYGKSVHAELFKRPIQSTSTIESALLTLYSKCGCDPDAYL-VFKSMEEK 437
Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKS--RIICDTVALLNLISVNAILGDLKRGKQ 272
D+++W ++ +ALK+F +M+ + D+ + ++ + A L L+ G Q
Sbjct: 438 DMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVTNACAGLEALRFGLQ 497
Query: 273 LHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC 332
+H ++ GL + + +S+I +YSKCG + + VF ++ +++V+W ++IS Y +N
Sbjct: 498 VHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEMALKVFTSMSTENMVAWNSMISCYSRNNL 557
Query: 333 AREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN 392
+++ F M + DS+++ S+L A A+L LHG G P ++N
Sbjct: 558 PELSIDLFNLMLSQGIFP-DSVSITSVLVAISSTASLLKGKSLHGYTLRLGIPSDTHLKN 616
Query: 393 CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV 452
LI Y KCG A +F++M + +++WN +IYGYG +G TAL+L+ +M + GE
Sbjct: 617 ALIDMYVKCGFSKYAENIFKKMQH-KSLITWNLMIYGYGSHGDCITALSLFDEMKKAGES 675
Query: 453 PDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASG 512
PD T+LS+++AC H+G +G IF M ++ ++P+ EHY +VDLL RAG L +A
Sbjct: 676 PDDVTFLSLISACNHSGFVEEGKNIFEFMKQDYGIEPNMEHYANMVDLLGRAGLLEEAYS 735
Query: 513 LAGKLLEGMGPNIWRALLSGCVLH 536
+ +IW LLS H
Sbjct: 736 FIKAMPIEADSSIWLCLLSASRTH 759
Score = 177 bits (450), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 136/496 (27%), Positives = 240/496 (48%), Gaps = 38/496 (7%)
Query: 4 DPYNSSKLLSNYFKSGKIKEAENLFDE-------IPEKNVVSWSIVIHGYSINGFHEKSM 56
DP+ ++ L++ Y K G + A +FD + ++V W+ +I GY ++ +
Sbjct: 94 DPFIATSLVNMYVKCGFLDYAVQVFDGWSQSQSGVSARDVTVWNSMIDGYFKFRRFKEGV 153
Query: 57 KAFSHMMLSGLLPNSFTM---VGVLVAAAGLQNLELARSIHGLMVKFGLESDLF--EGLK 111
F M++ G+ P++F++ V V+ + E + IHG M++ L++D F L
Sbjct: 154 GCFRRMLVFGVRPDAFSLSIVVSVMCKEGNFRREE-GKQIHGFMLRNSLDTDSFLKTALI 212
Query: 112 NPY---------------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNA 150
+ Y +V N ++ GF + + + ++ L+ + + + +
Sbjct: 213 DMYFKFGLSIDAWRVFVEIEDKSNVVLWNVMIVGFGGSGICESSLDLYMLAKNNSVKLVS 272
Query: 151 VTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFRE 210
+ + C + IH +K+GL D V S+L MYS + A +F
Sbjct: 273 TSFTGALGACSQSENSGFGRQIHCDVVKMGLHNDPYVCTSLLSMYSKCGMVGEAETVFSC 332
Query: 211 MECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG 270
+ K + W M+ + + +Y AL +F MR+ ++ D+ L N+IS ++LG G
Sbjct: 333 VVDKRLEIWNAMVAAYAENDYGYSALDLFGFMRQKSVLPDSFTLSNVISCCSVLGLYNYG 392
Query: 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN 330
K +HA++ +QS + ++++ +YSKCG + VF + EK +V+W ++ISG +N
Sbjct: 393 KSVHAELFKRPIQSTSTIESALLTLYSKCGCDPDAYLVFKSMEEKDMVAWGSLISGLCKN 452
Query: 331 GCAREALNQFIKMRQEKTDSV--DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYR 388
G +EAL F M+ + DS+ DS + S+ A L AL LQ+HG + G
Sbjct: 453 GKFKEALKVFGDMKDDD-DSLKPDSDIMTSVTNACAGLEALRFGLQVHGSMIKTGLVLNV 511
Query: 389 SVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTE 448
V + LI YSKCG ++A VF M ++V+WN++I Y N E ++ L++ M
Sbjct: 512 FVGSSLIDLYSKCGLPEMALKVFTSMS-TENMVAWNSMISCYSRNNLPELSIDLFNLMLS 570
Query: 449 TGEVPDSSTYLSILNA 464
G PDS + S+L A
Sbjct: 571 QGIFPDSVSITSVLVA 586
Score = 171 bits (433), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 127/511 (24%), Positives = 240/511 (46%), Gaps = 37/511 (7%)
Query: 4 DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
DPY + LLS Y K G + EAE +F + +K + W+ ++ Y+ N + ++ F M
Sbjct: 306 DPYVCTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYAENDYGYSALDLFGFMR 365
Query: 64 LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
+LP+SFT+ V+ + L +S+H + K ++S
Sbjct: 366 QKSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKRPIQSTSTIESALLTLYSKCGCDP 425
Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGS--GLVPNAVTMLTVIRG 159
+F+ ++ +V+ ++++G N F++A+ +F + L P++ M +V
Sbjct: 426 DAYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVTNA 485
Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
C L + +HG IK GL+L+V V +S++D+YS + A+++F M +++++W
Sbjct: 486 CAGLEALRFGLQVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEMALKVFTSMSTENMVAW 545
Query: 220 TRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279
M+ + ++ +F M I D+V++ +++ + L +GK LH +
Sbjct: 546 NSMISCYSRNNLPELSIDLFNLMLSQGIFPDSVSITSVLVAISSTASLLKGKSLHGYTLR 605
Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
G+ S+ L N++I MY KCG + ++F ++ KSL++W +I GY +G AL+
Sbjct: 606 LGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHKSLITWNLMIYGYGSHGDCITALSL 665
Query: 340 FIKMRQ--EKTDSVDSITLVSILTASGELAA----LEICLQLHGIAFEAGFPRYRSVQNC 393
F +M++ E D V ++L+S SG + E Q +GI E Y ++ +
Sbjct: 666 FDEMKKAGESPDDVTFLSLISACNHSGFVEEGKNIFEFMKQDYGI--EPNMEHYANMVDL 723
Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
L + G ++ AY + M D W ++ + + E + K+ E
Sbjct: 724 L----GRAGLLEEAYSFIKAMPIEADSSIWLCLLSASRTHHNVELGILSAEKLLRM-EPE 778
Query: 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIEE 484
STY+ ++N AGL N+ + M E+
Sbjct: 779 RGSTYVQLINLYMEAGLKNEAAKLLGLMKEK 809
Score = 130 bits (326), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 118/439 (26%), Positives = 207/439 (47%), Gaps = 18/439 (4%)
Query: 117 SCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAV-TMLTVIRGCVALGSRALCELIHGL 175
S N+ + I + QA+ L++ GS +V T ++++ C AL + + + IHG
Sbjct: 26 SINSGIRALIQKGEYLQALHLYSKHDGSSPFWTSVFTFPSLLKACSALTNLSYGKTIHGS 85
Query: 176 TIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIF-------REMECKDVISWTRMMGLFVD 228
+ LG D + S+++MY LD A+Q+F + +DV W M+ +
Sbjct: 86 VVVLGWRYDPFIATSLVNMYVKCGFLDYAVQVFDGWSQSQSGVSARDVTVWNSMIDGYFK 145
Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKR--GKQLHAQVVLGGLQSEL 286
F + + FR M + D +L ++SV G+ +R GKQ+H ++ L ++
Sbjct: 146 FRRFKEGVGCFRRMLVFGVRPDAFSLSIVVSVMCKEGNFRREEGKQIHGFMLRNSLDTDS 205
Query: 287 RLSNSIIAMYSKCG-DLDSSRSVFNQITEKS-LVSWTAIISGYVQNGCAREALNQFIKMR 344
L ++I MY K G +D+ R VF +I +KS +V W +I G+ +G +L+ ++ +
Sbjct: 206 FLKTALIDMYFKFGLSIDAWR-VFVEIEDKSNVVLWNVMIVGFGGSGICESSLDLYMLAK 264
Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
V S + L A + Q+H + G V L+S YSKCG V
Sbjct: 265 NNSVKLV-STSFTGALGACSQSENSGFGRQIHCDVVKMGLHNDPYVCTSLLSMYSKCGMV 323
Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
A VF + R + WN ++ Y N +G +AL L+ M + +PDS T ++++
Sbjct: 324 GEAETVFSCVVDKRLEI-WNAMVAAYAENDYGYSALDLFGFMRQKSVLPDSFTLSNVISC 382
Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
C GL N G + ++ + ++ + ++ L ++ GC DA L K +E
Sbjct: 383 CSVLGLYNYGKSVHAELFKR-PIQSTSTIESALLTLYSKCGCDPDAY-LVFKSMEEKDMV 440
Query: 525 IWRALLSGCVLHVGRFQDA 543
W +L+SG + G+F++A
Sbjct: 441 AWGSLISG-LCKNGKFKEA 458
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 244 bits (624), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 164/591 (27%), Positives = 288/591 (48%), Gaps = 76/591 (12%)
Query: 11 LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
++S Y ++G+ + A LFDE+PE+++VSW+++I GY N K+ + F ++P
Sbjct: 101 MISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFE------IMPE 154
Query: 71 SFTMVGVLVAAAGLQN--LELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINN 128
+ + QN ++ ARS+ F+ + VS NA+++ ++ N
Sbjct: 155 RDVCSWNTMLSGYAQNGCVDDARSV-------------FDRMPEKNDVSWNALLSAYVQN 201
Query: 129 KLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVN 188
++A +LF LV + ++ + +R + ++ + DV
Sbjct: 202 SKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMN--------VRDVVSW 253
Query: 189 NSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRII 248
N+++ Y+ +D A Q+F E +DV +WT M+ ++ +A ++F
Sbjct: 254 NTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELF--------- 304
Query: 249 CDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLS--NSIIAMYSKCGDLDSSR 306
D + N +S NA+L +G+++ L + +S N++I Y++CG + ++
Sbjct: 305 -DKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAK 363
Query: 307 SVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGEL 366
++F+++ ++ VSW A+I+GY Q+G + EAL F++M +E ++ + S L+ ++
Sbjct: 364 NLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMERE-GGRLNRSSFSSALSTCADV 422
Query: 367 AALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTI 426
ALE+ QLHG + G+ V N L+ Y KCG+++ A +F+EM +D+VSWNT+
Sbjct: 423 VALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAG-KDIVSWNTM 481
Query: 427 IYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENK 486
I GY +G GE AL + M G PD +T +++L+AC H GL + G F M ++
Sbjct: 482 IAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYG 541
Query: 487 VKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH---------- 536
V P+ +HY C+VDLL RAG L DA L + IW LL +H
Sbjct: 542 VMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAA 601
Query: 537 -----------------------VGRFQDAEALRSGSQKKGIIKIPGISFL 564
GR+ D LR + KG+ K+PG S++
Sbjct: 602 DKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWI 652
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 92/186 (49%), Gaps = 22/186 (11%)
Query: 1 PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
PC + + +++ Y + GKI EA+NLFD++P+++ VSW+ +I GYS +G ++++ F
Sbjct: 339 PCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFV 398
Query: 61 HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLES---------------- 104
M G N + L A + LEL + +HG +VK G E+
Sbjct: 399 QMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCG 458
Query: 105 ------DLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
DLF+ + +VS N ++AG+ + + A+ F + GL P+ TM+ V+
Sbjct: 459 SIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLS 518
Query: 159 GCVALG 164
C G
Sbjct: 519 ACSHTG 524
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 105/229 (45%), Gaps = 45/229 (19%)
Query: 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYV--------------------- 328
N +I+ Y + G+ + +R +F+++ E+ LVSW +I GYV
Sbjct: 99 NGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVC 158
Query: 329 ----------QNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGI 378
QNGC +A + F +M EK D ++ ++L+A + + +E L
Sbjct: 159 SWNTMLSGYAQNGCVDDARSVFDRM-PEKND----VSWNALLSAYVQNSKMEEACML--- 210
Query: 379 AFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGET 438
F++ NCL+ + K + A F+ M +RDVVSWNTII GY +G +
Sbjct: 211 -FKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMN-VRDVVSWNTIITGYAQSGKIDE 268
Query: 439 ALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKV 487
A L+ + V D T+ ++++ + + +F++M E N+V
Sbjct: 269 ARQLF----DESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEV 313
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 97/250 (38%), Gaps = 65/250 (26%)
Query: 241 EMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ--SELRLSNSIIAMYSK 298
E+ K R + L+ S+N + +R H L+ ++ ++ S K
Sbjct: 2 EINKFRALSRRAQQLHYTSLNGLK---RRCNNAHGAANFHSLKRATQTQIQKSQTKPLLK 58
Query: 299 CGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVS 358
CGD D + W IS Y++ G EAL F +M
Sbjct: 59 CGDSD-------------IKEWNVAISSYMRTGRCNEALRVFKRM--------------- 90
Query: 359 ILTASGELAALEICLQLHGIAFEAGFPRYRSVQ-NCLISSYSKCGNVDLAYIVFEEMGFL 417
PR+ SV N +IS Y + G +LA +F+EM
Sbjct: 91 --------------------------PRWSSVSYNGMISGYLRNGEFELARKLFDEMP-E 123
Query: 418 RDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVI 477
RD+VSWN +I GY N + A L+ M E D ++ ++L+ G +D +
Sbjct: 124 RDLVSWNVMIKGYVRNRNLGKARELFEIMPER----DVCSWNTMLSGYAQNGCVDDARSV 179
Query: 478 FNQMIEENKV 487
F++M E+N V
Sbjct: 180 FDRMPEKNDV 189
>sp|Q9SS83|PP220_ARATH Pentatricopeptide repeat-containing protein At3g09040,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E88 PE=2
SV=1
Length = 1028
Score = 244 bits (622), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 171/623 (27%), Positives = 290/623 (46%), Gaps = 63/623 (10%)
Query: 6 YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
Y S L+S Y K K++ A +F+ + EKN V W+ +I GY+ NG K M+ F M S
Sbjct: 363 YVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSS 422
Query: 66 GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG--LKNPYL-------- 115
G + FT +L A +LE+ H +++K L +LF G L + Y
Sbjct: 423 GYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDA 482
Query: 116 ------------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
V+ N I+ ++ ++ +A LF G+V + + + ++ C +
Sbjct: 483 RQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHV 542
Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
+ +H L++K GL D+ +S++DMYS + A ++F + V+S ++
Sbjct: 543 HGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALI 602
Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
+ +A+ +F+EM + + ++ L G Q H Q+ G
Sbjct: 603 AGYSQNNLE-EAVVLFQEMLTRGVNPSEITFATIVEACHKPESLTLGTQFHGQITKRGFS 661
Query: 284 SELR-LSNSIIAMYSKCGDLDSSRSVFNQITE-KSLVSWTAIISGYVQNGCAREALNQFI 341
SE L S++ MY + + ++F++++ KS+V WT ++SG+ QNG EAL +
Sbjct: 662 SEGEYLGISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYK 721
Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
+MR + D T V++L L++L +H + F N LI Y+KC
Sbjct: 722 EMRHDGV-LPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKC 780
Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
G++ + VF+EM +VVSWN++I GY NG+ E AL ++ M ++ +PD T+L +
Sbjct: 781 GDMKGSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGV 840
Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
L AC HAG +DG IF MI + ++ +H C+VDLL R G L +A + +
Sbjct: 841 LTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEA--QNL 898
Query: 522 GPN--IWRALLSGCVLH---------------------------------VGRFQDAEAL 546
P+ +W +LL C +H G ++ A AL
Sbjct: 899 KPDARLWSSLLGACRIHGDDIRGEISAEKLIELEPQNSSAYVLLSNIYASQGCWEKANAL 958
Query: 547 RSGSQKKGIIKIPGISFLNSTSR 569
R + +G+ K+PG S+++ R
Sbjct: 959 RKVMRDRGVKKVPGYSWIDVEQR 981
Score = 200 bits (508), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 146/547 (26%), Positives = 260/547 (47%), Gaps = 30/547 (5%)
Query: 11 LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
+++ Y + GK+K+A LF E+ +VV+W+++I G+ G +++ F +M S +
Sbjct: 267 VINTYIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKST 326
Query: 71 SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL----------------------FE 108
T+ VL A + NL+L +H +K GL S++ FE
Sbjct: 327 RSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFE 386
Query: 109 GLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168
L+ V NA++ G+ +N + + LF + SG + T +++ C A +
Sbjct: 387 ALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEM 446
Query: 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
H + IK L ++ V N+++DMY+ L+ A QIF M +D ++W ++G +V
Sbjct: 447 GSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQ 506
Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
E +A +F+ M I+ D L + + + L +GKQ+H V GL +L
Sbjct: 507 DENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVKCGLDRDLHT 566
Query: 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348
+S+I MYSKCG + +R VF+ + E S+VS A+I+GY QN EA+ F +M
Sbjct: 567 GSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGYSQNNL-EEAVVLFQEMLTRGV 625
Query: 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFP---RYRSVQNCLISSYSKCGNVD 405
+ + IT +I+ A + +L + Q HG + GF Y + L+ Y +
Sbjct: 626 NPSE-ITFATIVEACHKPESLTLGTQFHGQITKRGFSSEGEYLGIS--LLGMYMNSRGMT 682
Query: 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
A +F E+ + +V W ++ G+ NG E AL Y +M G +PD +T++++L C
Sbjct: 683 EACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVC 742
Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI 525
+G I + +I + ++D+ A+ G + +S + ++
Sbjct: 743 SVLSSLREGRAI-HSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSNVVS 801
Query: 526 WRALLSG 532
W +L++G
Sbjct: 802 WNSLING 808
Score = 190 bits (483), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 135/475 (28%), Positives = 217/475 (45%), Gaps = 60/475 (12%)
Query: 15 YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTM 74
Y K ++ AE FD + EK+V +W+ ++ YS G K +++F + + + PN FT
Sbjct: 105 YAKCAQVSYAEKQFDFL-EKDVTAWNSMLSMYSSIGKPGKVLRSFVSLFENQIFPNKFTF 163
Query: 75 VGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFEGLKN 112
VL A N+E R IH M+K GLE + +FE + +
Sbjct: 164 SIVLSTCARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRISDARRVFEWIVD 223
Query: 113 PYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELI 172
P V + +G++ L ++AVL+F R G P+ + +TVI + LG
Sbjct: 224 PNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRPDHLAFVTVINTYIRLGK------- 276
Query: 173 HGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYA 232
L A +F EM DV++W M+
Sbjct: 277 ----------------------------LKDARLLFGEMSSPDVVAWNVMISGHGKRGCE 308
Query: 233 GDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSI 292
A++ F MRKS + L +++S I+ +L G +HA+ + GL S + + +S+
Sbjct: 309 TVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSL 368
Query: 293 IAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVD 352
++MYSKC ++++ VF + EK+ V W A+I GY NG + + + F+ M+ + +D
Sbjct: 369 VSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYN-ID 427
Query: 353 SITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFE 412
T S+L+ LE+ Q H I + + V N L+ Y+KCG ++ A +FE
Sbjct: 428 DFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFE 487
Query: 413 EMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
M RD V+WNTII Y + + A L+ +M G V D + S L AC H
Sbjct: 488 RM-CDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTH 541
Score = 179 bits (455), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 140/530 (26%), Positives = 243/530 (45%), Gaps = 18/530 (3%)
Query: 4 DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
+ Y L+ Y K +I +A +F+ I + N V W+ + GY G E+++ F M
Sbjct: 194 NSYCGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMR 253
Query: 64 LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVA 123
G P+ V V+ L L+ AR + G M +P +V+ N +++
Sbjct: 254 DEGHRPDHLAFVTVINTYIRLGKLKDARLLFGEM-------------SSPDVVAWNVMIS 300
Query: 124 GFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLIL 183
G A+ F R S + T+ +V+ + + L ++H IKLGL
Sbjct: 301 GHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLAS 360
Query: 184 DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMR 243
++ V +S++ MYS ++AA ++F +E K+ + W M+ + + +++F +M+
Sbjct: 361 NIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMK 420
Query: 244 KSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLD 303
S D +L+S A DL+ G Q H+ ++ L L + N+++ MY+KCG L+
Sbjct: 421 SSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALE 480
Query: 304 SSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTAS 363
+R +F ++ ++ V+W II YVQ+ EA + F +M S D L S L A
Sbjct: 481 DARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVS-DGACLASTLKAC 539
Query: 364 GELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSW 423
+ L Q+H ++ + G R + LI YSKCG + A VF + VVS
Sbjct: 540 THVHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEW-SVVSM 598
Query: 424 NTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIE 483
N +I GY N + E A+ L+ +M G P T+ +I+ AC G F+ I
Sbjct: 599 NALIAGYSQN-NLEEAVVLFQEMLTRGVNPSEITFATIVEACHKPESLTLG-TQFHGQIT 656
Query: 484 ENKVKPSQEHYG-CVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSG 532
+ E+ G ++ + + +++A L +L +W ++SG
Sbjct: 657 KRGFSSEGEYLGISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSG 706
Score = 136 bits (342), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 89/312 (28%), Positives = 155/312 (49%), Gaps = 27/312 (8%)
Query: 4 DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
D + S L+ Y K G IK+A +F +PE +VVS + +I GYS N E+++ F M+
Sbjct: 563 DLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGYSQNNL-EEAVVLFQEML 621
Query: 64 LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
G+ P+ T ++ A ++L L HG + K G S+
Sbjct: 622 TRGVNPSEITFATIVEACHKPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGM 681
Query: 106 -----LFEGLKNPY-LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
LF L +P +V +++G N +++A+ + R G++P+ T +TV+R
Sbjct: 682 TEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRV 741
Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK-DVIS 218
C L S IH L L LD +N+++DMY+ D+ + Q+F EM + +V+S
Sbjct: 742 CSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSNVVS 801
Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
W ++ + YA DALKIF MR+S I+ D + L +++ + G + G+++ +++
Sbjct: 802 WNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKIF-EMM 860
Query: 279 LGGLQSELRLSN 290
+G E R+ +
Sbjct: 861 IGQYGIEARVDH 872
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 93/403 (23%), Positives = 173/403 (42%), Gaps = 66/403 (16%)
Query: 172 IHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEY 231
+H ++ LG+ + + N+++D+Y+ + A + F +E KDV +W M+ ++
Sbjct: 82 VHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFDFLE-KDVTAWNSMLSMYSSIGK 140
Query: 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS 291
G L+ F + +++I + ++S A +++ G+Q+H ++ GL+ +
Sbjct: 141 PGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLERNSYCGGA 200
Query: 292 IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE--KTD 349
++ MY+KC + +R VF I + + V WT + SGYV+ G EA+ F +MR E + D
Sbjct: 201 LVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRPD 260
Query: 350 SVDSITLVSILTASGEL---------------AALEICLQLHG------IAFEAGF---- 384
+ +T+++ G+L A + + HG +A E F
Sbjct: 261 HLAFVTVINTYIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRK 320
Query: 385 ---PRYRSVQNCLISSYSKCGNVDLAYIVFEE---MGFLRDV------------------ 420
RS ++S+ N+DL +V E +G ++
Sbjct: 321 SSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEA 380
Query: 421 -------------VSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467
V WN +I GY NG + L+ M +G D T+ S+L+ C
Sbjct: 381 AAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAA 440
Query: 468 AGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
+ G F+ +I + K+ + +VD+ A+ G L DA
Sbjct: 441 SHDLEMG-SQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDA 482
Score = 89.4 bits (220), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 103/215 (47%), Gaps = 3/215 (1%)
Query: 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISG 326
L+ GK +H++ ++ G+ SE RL N+I+ +Y+KC + + F+ EK + +W +++S
Sbjct: 76 LRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFD-FLEKDVTAWNSMLSM 134
Query: 327 YVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPR 386
Y G + L F+ + + + + T +L+ +E Q+H + G R
Sbjct: 135 YSSIGKPGKVLRSFVSLFENQIFP-NKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLER 193
Query: 387 YRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM 446
L+ Y+KC + A VFE + + V W + GY G E A+ ++ +M
Sbjct: 194 NSYCGGALVDMYAKCDRISDARRVFEWI-VDPNTVCWTCLFSGYVKAGLPEEAVLVFERM 252
Query: 447 TETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQM 481
+ G PD +++++N G D ++F +M
Sbjct: 253 RDEGHRPDHLAFVTVINTYIRLGKLKDARLLFGEM 287
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 74/172 (43%), Gaps = 14/172 (8%)
Query: 368 ALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFL-RDVVSWNTI 426
AL I +H + G + N ++ Y+KC V A F+ FL +DV +WN++
Sbjct: 75 ALRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFD---FLEKDVTAWNSM 131
Query: 427 IYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENK 486
+ Y G L + + E P+ T+ +L+ C G I MI K
Sbjct: 132 LSMYSSIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQIHCSMI---K 188
Query: 487 VKPSQEHY--GCVVDLLARAGCLSDASGLAGKLLEGMGPNI--WRALLSGCV 534
+ + Y G +VD+ A+ +SDA + +++ PN W L SG V
Sbjct: 189 MGLERNSYCGGALVDMYAKCDRISDARRVFEWIVD---PNTVCWTCLFSGYV 237
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 244 bits (622), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 162/568 (28%), Positives = 279/568 (49%), Gaps = 33/568 (5%)
Query: 9 SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS-GL 67
+KL G I A ++F + +V +++++ G+S+N S+ F+H+ S L
Sbjct: 56 TKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDL 115
Query: 68 LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL--------------------- 106
PNS T + AA+G ++ R IHG V G +S+L
Sbjct: 116 KPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARK 175
Query: 107 -FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLF-NFFRGSGLVPNAVTMLTVIRGCVALG 164
F+ + + N +++G+ N+++ +++ +F + S + T+L ++ L
Sbjct: 176 VFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQ 235
Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
L IH L K G V + +YS + +FRE D++++ M+
Sbjct: 236 ELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIH 295
Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284
+ +L +F+E+ S + L++L+ V+ G L +H + S
Sbjct: 296 GYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVS---GHLMLIYAIHGYCLKSNFLS 352
Query: 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344
+S ++ +YSK +++S+R +F++ EKSL SW A+ISGY QNG +A++ F +M
Sbjct: 353 HASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREM- 411
Query: 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404
Q+ S + +T+ IL+A +L AL + +H + F V LI Y+KCG++
Sbjct: 412 QKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSI 471
Query: 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464
A +F+ M ++ V+WNT+I GYG++G G+ AL ++++M +G P T+L +L A
Sbjct: 472 AEARRLFDLMT-KKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYA 530
Query: 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPN 524
C HAGL +G IFN MI +PS +HY C+VD+L RAG L A + G +
Sbjct: 531 CSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSS 590
Query: 525 IWRALLSGCVLHVGRFQDAEALRSGSQK 552
+W LL C +H +D R+ S+K
Sbjct: 591 VWETLLGACRIH----KDTNLARTVSEK 614
Score = 172 bits (437), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 127/483 (26%), Positives = 228/483 (47%), Gaps = 38/483 (7%)
Query: 9 SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM-LSGL 67
S ++ YFK ++++A +FD +PEK+ + W+ +I GY N + +S++ F ++ S
Sbjct: 158 SNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCT 217
Query: 68 LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG----------------------LESD 105
++ T++ +L A A LQ L L IH L K G + S
Sbjct: 218 RLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSA 277
Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165
LF + P +V+ NA++ G+ +N + ++ LF SG + T+++++ G
Sbjct: 278 LFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLV---PVSGH 334
Query: 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225
L IHG +K + SV+ ++ +YS L ++++A ++F E K + SW M+
Sbjct: 335 LMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISG 394
Query: 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285
+ DA+ +FREM+KS + V + ++S A LG L GK +H V +S
Sbjct: 395 YTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESS 454
Query: 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345
+ +S ++I MY+KCG + +R +F+ +T+K+ V+W +ISGY +G +EALN F +M
Sbjct: 455 IYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLN 514
Query: 346 EKTDSVDSITLVSILTASGELAALE-----ICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400
+T + +L A ++ +H FE Y C++ +
Sbjct: 515 SGITPT-PVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHY----ACMVDILGR 569
Query: 401 CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460
G++ A E M W T++ ++ A + K+ E PD+ Y
Sbjct: 570 AGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELD--PDNVGYHV 627
Query: 461 ILN 463
+L+
Sbjct: 628 LLS 630
Score = 83.2 bits (204), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 111/248 (44%), Gaps = 38/248 (15%)
Query: 8 SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
S+ L + Y K +I+ A LFDE PEK++ SW+ +I GY+ NG E ++ F M S
Sbjct: 357 STALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEF 416
Query: 68 LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
PN T+ +L A A L L L + +H L+ ES
Sbjct: 417 SPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARR 476
Query: 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG- 164
LF+ + V+ N +++G+ + Q+A+ +F SG+ P VT L V+ C G
Sbjct: 477 LFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGL 536
Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMD-------LDAAIQIFREMECKDVI 217
+ E+ + + + G + SV + Y+C++D L A+Q M +
Sbjct: 537 VKEGDEIFNSMIHRYG--FEPSVKH-----YACMVDILGRAGHLQRALQFIEAMSIEPGS 589
Query: 218 S-WTRMMG 224
S W ++G
Sbjct: 590 SVWETLLG 597
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 94/215 (43%), Gaps = 8/215 (3%)
Query: 257 LISVNAILGDLKRGK------QLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFN 310
LIS N L KR Q HAQ++L G ++++ L + S G + +R +F
Sbjct: 17 LISKNTYLDFFKRSTSISHLAQTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFL 76
Query: 311 QITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALE 370
+ + + ++ G+ N +L+ F +R+ +S T ++A+
Sbjct: 77 SVQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDR 136
Query: 371 ICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGY 430
+HG A G + + ++ Y K V+ A VF+ M +D + WNT+I GY
Sbjct: 137 AGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMP-EKDTILWNTMISGY 195
Query: 431 GVNGHGETALALYHKM-TETGEVPDSSTYLSILNA 464
N ++ ++ + E+ D++T L IL A
Sbjct: 196 RKNEMYVESIQVFRDLINESCTRLDTTTLLDILPA 230
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Query: 6 YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
Y S+ L+ Y K G I EA LFD + +KN V+W+ +I GY ++G ++++ F M+ S
Sbjct: 456 YVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNS 515
Query: 66 GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMV-KFGLE 103
G+ P T + VL A + ++ I M+ ++G E
Sbjct: 516 GITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFE 554
>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610
OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1
Length = 868
Score = 243 bits (620), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 154/560 (27%), Positives = 281/560 (50%), Gaps = 46/560 (8%)
Query: 9 SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
+ L+ Y K K+ +FDE+ E+NVV+W+ +I GY+ N +++ + F M G
Sbjct: 132 TSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQ 191
Query: 69 PNSFTMVGVL-------VAAAGLQNLELARSIHGLMVKFGLESD---------------- 105
PNSFT L V GLQ +H ++VK GL+
Sbjct: 192 PNSFTFAAALGVLAEEGVGGRGLQ-------VHTVVVKNGLDKTIPVSNSLINLYLKCGN 244
Query: 106 ------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159
LF+ + +V+ N++++G+ N L +A+ +F R + + + + +VI+
Sbjct: 245 VRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKL 304
Query: 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYS-CLMDLDAAIQIFREMEC-KDVI 217
C L E +H +K G + D ++ +++ YS C LDA +++F+E+ C +V+
Sbjct: 305 CANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDA-LRLFKEIGCVGNVV 363
Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
SWT M+ F+ + +A+ +F EM++ + + +++ ++ ++HAQV
Sbjct: 364 SWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISP----SEVHAQV 419
Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
V + + +++ Y K G ++ + VF+ I +K +V+W+A+++GY Q G A+
Sbjct: 420 VKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAI 479
Query: 338 NQFIKMRQEKTDSVDSITLVSILTA-SGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
F ++ + + T SIL + A++ Q HG A ++ V + L++
Sbjct: 480 KMFGELTKGGIKP-NEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLT 538
Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
Y+K GN++ A VF+ +D+VSWN++I GY +G AL ++ +M + D
Sbjct: 539 MYAKKGNIESAEEVFKRQR-EKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGV 597
Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK 516
T++ + AC HAGL +G F+ M+ + K+ P++EH C+VDL +RAG L A +
Sbjct: 598 TFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIEN 657
Query: 517 LLEGMGPNIWRALLSGCVLH 536
+ G IWR +L+ C +H
Sbjct: 658 MPNPAGSTIWRTILAACRVH 677
Score = 174 bits (441), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 133/521 (25%), Positives = 243/521 (46%), Gaps = 58/521 (11%)
Query: 8 SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
S+ L++ Y K G +++A LFD+ K+VV+W+ +I GY+ NG +++ F M L+ +
Sbjct: 232 SNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYV 291
Query: 68 LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG--LESDLFEGLKNPY----------- 114
+ + V+ A L+ L +H +VK+G + ++ L Y
Sbjct: 292 RLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALR 351
Query: 115 ----------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
+VS A+++GF+ N ++AV LF+ + G+ PN T ++ +
Sbjct: 352 LFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVIS 411
Query: 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG 224
+H +K +V ++LD Y L ++ A ++F ++ KD+++W+ M+
Sbjct: 412 PSE----VHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLA 467
Query: 225 LFVDFEYAGDALKIFREMRKSRIICDTVALLNLISV----NAILGDLKRGKQLHAQVVLG 280
+ A+K+F E+ K I + ++++V NA +G +GKQ H +
Sbjct: 468 GYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMG---QGKQFHGFAIKS 524
Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQF 340
L S L +S++++ MY+K G+++S+ VF + EK LVSW ++ISGY Q+G A +AL+ F
Sbjct: 525 RLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVF 584
Query: 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAF-EAGFPRYRSVQNCLISSYS 399
+M++ K +D +T + + A +E + I + + +C++ YS
Sbjct: 585 KEMKKRKV-KMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYS 643
Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP------ 453
+ G ++ A V E M W TI+ A HK TE G +
Sbjct: 644 RAGQLEKAMKVIENMPNPAGSTIWRTIL-----------AACRVHKKTELGRLAAEKIIA 692
Query: 454 ----DSSTYLSILNACGHAGLTNDGLVIFNQMIEEN-KVKP 489
DS+ Y+ + N +G + + M E N K +P
Sbjct: 693 MKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEP 733
Score = 173 bits (438), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 138/573 (24%), Positives = 276/573 (48%), Gaps = 38/573 (6%)
Query: 18 SGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGV 77
S ++ A NLFD+ P ++ S+ ++ G+S +G +++ + F ++ G+ + V
Sbjct: 40 SSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSV 99
Query: 78 LVAAAGLQNLELARSIHGLMVKFGLESD----------------------LFEGLKNPYL 115
L +A L + R +H +KFG D +F+ +K +
Sbjct: 100 LKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNV 159
Query: 116 VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA---LGSRALCELI 172
V+ +++G+ N + + + LF + G PN+ T + G +A +G R L +
Sbjct: 160 VTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAAL-GVLAEEGVGGRGL--QV 216
Query: 173 HGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYA 232
H + +K GL + V+NS++++Y ++ A +F + E K V++W M+ +
Sbjct: 217 HTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLD 276
Query: 233 GDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSI 292
+AL +F MR + + + ++I + A L +L+ +QLH VV G + + ++
Sbjct: 277 LEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTAL 336
Query: 293 IAMYSKCGDLDSSRSVFNQI-TEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351
+ YSKC + + +F +I ++VSWTA+ISG++QN EA++ F +M++ K
Sbjct: 337 MVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKR-KGVRP 395
Query: 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVF 411
+ T ILTA ++ E+ H + + R +V L+ +Y K G V+ A VF
Sbjct: 396 NEFTYSVILTALPVISPSEV----HAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVF 451
Query: 412 EEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLT 471
+ +D+V+W+ ++ GY G E A+ ++ ++T+ G P+ T+ SILN C +
Sbjct: 452 SGID-DKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNAS 510
Query: 472 NDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLS 531
F+ ++++ S ++ + A+ G + A + + E + W +++S
Sbjct: 511 MGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVS-WNSMIS 569
Query: 532 GCVLHVGRFQDAEALRSGSQKKGIIKIPGISFL 564
G H + + + ++K +K+ G++F+
Sbjct: 570 GYAQHGQAMKALDVFKEMKKRK--VKMDGVTFI 600
>sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170,
chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2
SV=1
Length = 850
Score = 241 bits (615), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 170/563 (30%), Positives = 280/563 (49%), Gaps = 38/563 (6%)
Query: 6 YNSSKLLSNYFKSGKIKEAENLFDEIP---EKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
YNS L+S Y KSG +AE++F+ + +++VVSWS ++ Y NG ++K F
Sbjct: 100 YNS--LISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEF 157
Query: 63 MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG-LESDLFEG------------ 109
+ GL+PN + V+ A + + + R G ++K G ESD+ G
Sbjct: 158 LELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGEN 217
Query: 110 -LKNPYLV-----SCNAIVAGFINNKLFQ-----QAVLLFNFFRGSGLVPNAVTMLTVIR 158
+N Y V N + + + Q +A+ F SG + T+ +V
Sbjct: 218 SFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFS 277
Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYS-CLMD--LDAAIQIFREMECKD 215
C L + +L + +H I+ GL+ DV S++DMY+ C D +D ++F ME
Sbjct: 278 ACAELENLSLGKQLHSWAIRSGLVDDVEC--SLVDMYAKCSADGSVDDCRKVFDRMEDHS 335
Query: 216 VISWTRMM-GLFVDFEYAGDALKIFREM-RKSRIICDTVALLNLISVNAILGDLKRGKQL 273
V+SWT ++ G + A +A+ +F EM + + + + L D + GKQ+
Sbjct: 336 VMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQV 395
Query: 274 HAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCA 333
Q GL S ++NS+I+M+ K ++ ++ F ++EK+LVS+ + G +N
Sbjct: 396 LGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNF 455
Query: 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNC 393
+A + + E+ V + T S+L+ + ++ Q+H + G + V N
Sbjct: 456 EQAF-KLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNA 514
Query: 394 LISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453
LIS YSKCG++D A VF M R+V+SW ++I G+ +G L +++M E G P
Sbjct: 515 LISMYSKCGSIDTASRVFNFMEN-RNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKP 573
Query: 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL 513
+ TY++IL+AC H GL ++G FN M E++K+KP EHY C+VDLL RAG L+DA
Sbjct: 574 NEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEF 633
Query: 514 AGKLLEGMGPNIWRALLSGCVLH 536
+ +WR L C +H
Sbjct: 634 INTMPFQADVLVWRTFLGACRVH 656
Score = 169 bits (427), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 128/498 (25%), Positives = 241/498 (48%), Gaps = 36/498 (7%)
Query: 21 IKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVA 80
+ A +FD++ E NVV+W+++I GF ++++ F M+LSG + FT+ V A
Sbjct: 219 FENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSA 278
Query: 81 AAGLQNLELARSIHGLMVKFGLESDL-----------------------FEGLKNPYLVS 117
A L+NL L + +H ++ GL D+ F+ +++ ++S
Sbjct: 279 CAELENLSLGKQLHSWAIRSGLVDDVECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMS 338
Query: 118 CNAIVAGFINN-KLFQQAVLLFNFFRGSGLV-PNAVTMLTVIRGCVALGSRALCELIHGL 175
A++ G++ N L +A+ LF+ G V PN T + + C L + + + G
Sbjct: 339 WTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQ 398
Query: 176 TIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMG---LFVDFEYA 232
K GL + SV NSV+ M+ ++ A + F + K+++S+ + ++FE
Sbjct: 399 AFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFE-- 456
Query: 233 GDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSI 292
A K+ E+ + + +L+S A +G +++G+Q+H+QVV GL + N++
Sbjct: 457 -QAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNAL 515
Query: 293 IAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVD 352
I+MYSKCG +D++ VFN + ++++SWT++I+G+ ++G A L F +M +E +
Sbjct: 516 ISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKP-N 574
Query: 353 SITLVSILTASGELAALEICLQLHGIAFEAGF--PRYRSVQNCLISSYSKCGNVDLAYIV 410
+T V+IL+A + + + +E P+ C++ + G + A+
Sbjct: 575 EVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYA-CMVDLLCRAGLLTDAFEF 633
Query: 411 FEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGL 470
M F DV+ W T + V+ + E K+ E + + + Y+ + N AG
Sbjct: 634 INTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILEL-DPNEPAAYIQLSNIYACAGK 692
Query: 471 TNDGLVIFNQMIEENKVK 488
+ + +M E N VK
Sbjct: 693 WEESTEMRRKMKERNLVK 710
Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 98/345 (28%), Positives = 173/345 (50%), Gaps = 15/345 (4%)
Query: 134 AVLLFNFFRGSGLVP-NAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVL 192
AV + G+ P ++VT ++++ C+ L +L+H I+ + D + NS++
Sbjct: 45 AVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLI 104
Query: 193 DMYSCLMDLDAAIQIFREME---CKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIIC 249
+YS D A +F M +DV+SW+ MM + + DA+K+F E + ++
Sbjct: 105 SLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVP 164
Query: 250 DTVALLNLISVNAILGDLKRGK-QLHAQVVLGGLQSELRLSNSIIAMYSKCGD-LDSSRS 307
+ +I + + G+ L + G +S++ + S+I M+ K + +++
Sbjct: 165 NDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYK 224
Query: 308 VFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELA 367
VF++++E ++V+WT +I+ +Q G REA+ F+ M +S D TL S+ +A EL
Sbjct: 225 VFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFES-DKFTLSSVFSACAELE 283
Query: 368 ALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC---GNVDLAYIVFEEMGFLRDVVSWN 424
L + QLH A +G V+ L+ Y+KC G+VD VF+ M V+SW
Sbjct: 284 NLSLGKQLHSWAIRSGL--VDDVECSLVDMYAKCSADGSVDDCRKVFDRME-DHSVMSWT 340
Query: 425 TIIYGYGVNGHGET-ALALYHKMTETGEV-PDSSTYLSILNACGH 467
+I GY N + T A+ L+ +M G V P+ T+ S ACG+
Sbjct: 341 ALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGN 385
>sp|Q9FNN9|PP370_ARATH Putative pentatricopeptide repeat-containing protein At5g08490
OS=Arabidopsis thaliana GN=PCMP-E32 PE=3 SV=1
Length = 849
Score = 240 bits (612), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 170/590 (28%), Positives = 285/590 (48%), Gaps = 67/590 (11%)
Query: 11 LLSNYFKSGKI-KEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLP 69
L+S Y K G I +A FD I +K+VVSW+ +I G+S N + ++F M+ P
Sbjct: 163 LVSMYAKFGFIFPDAYTAFDGIADKDVVSWNAIIAGFSENNMMADAFRSFCLMLKEPTEP 222
Query: 70 NSFTMVGVLVAAAGLQN---LELARSIHGLMVK----------------FGLE------- 103
N T+ VL A + R IH +V+ F L
Sbjct: 223 NYATIANVLPVCASMDKNIACRSGRQIHSYVVQRSWLQTHVFVCNSLVSFYLRVGRIEEA 282
Query: 104 SDLFEGLKNPYLVSCNAIVAGFINN-KLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA 162
+ LF + + LVS N ++AG+ +N + F+ L N + P++VT+++++ C
Sbjct: 283 ASLFTRMGSKDLVSWNVVIAGYASNCEWFKAFQLFHNLVHKGDVSPDSVTIISILPVCAQ 342
Query: 163 LGSRALCELIHGLTIKLGLIL-DVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
L A + IH ++ +L D SV N+++ Y+ D AA F M KD+ISW
Sbjct: 343 LTDLASGKEIHSYILRHSYLLEDTSVGNALISFYARFGDTSAAYWAFSLMSTKDIISWNA 402
Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
++ F D L + + I D+V +L+L+ + + + K++H V G
Sbjct: 403 ILDAFADSPKQFQFLNLLHHLLNEAITLDSVTILSLLKFCINVQGIGKVKEVHGYSVKAG 462
Query: 282 L---QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK-SLVSWTAIISGYVQNG------ 331
L + E +L N+++ Y+KCG+++ + +F ++E+ +LVS+ +++SGYV +G
Sbjct: 463 LLHDEEEPKLGNALLDAYAKCGNVEYAHKIFLGLSERRTLVSYNSLLSGYVNSGSHDDAQ 522
Query: 332 -------------------------CAREALNQFIKMRQEKTDSVDSITLVSILTASGEL 366
C EA+ F ++ Q + +++T++++L +L
Sbjct: 523 MLFTEMSTTDLTTWSLMVRIYAESCCPNEAIGVFREI-QARGMRPNTVTIMNLLPVCAQL 581
Query: 367 AALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTI 426
A+L + Q HG G R ++ L+ Y+KCG++ AY VF+ RD+V + +
Sbjct: 582 ASLHLVRQCHGYIIRGGLGDIR-LKGTLLDVYAKCGSLKHAYSVFQSDA-RRDLVMFTAM 639
Query: 427 IYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENK 486
+ GY V+G G+ AL +Y MTE+ PD ++L AC HAGL DGL I++ + +
Sbjct: 640 VAGYAVHGRGKEALMIYSHMTESNIKPDHVFITTMLTACCHAGLIQDGLQIYDSIRTVHG 699
Query: 487 VKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536
+KP+ E Y C VDL+AR G L DA ++ NIW LL C +
Sbjct: 700 MKPTMEQYACAVDLIARGGRLDDAYSFVTQMPVEPNANIWGTLLRACTTY 749
Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 126/516 (24%), Positives = 249/516 (48%), Gaps = 40/516 (7%)
Query: 8 SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSG- 66
S +L+ Y K ++ + + +F ++ + V W+IV+ G S++ E +M+ F M +
Sbjct: 59 SKSVLNMYAKCRRMDDCQKMFRQMDSLDPVVWNIVLTGLSVSCGRE-TMRFFKAMHFADE 117
Query: 67 LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL-------------------- 106
P+S T VL L + +S+H ++K GLE D
Sbjct: 118 PKPSSVTFAIVLPLCVRLGDSYNGKSMHSYIIKAGLEKDTLVGNALVSMYAKFGFIFPDA 177
Query: 107 ---FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
F+G+ + +VS NAI+AGF N + A F PN T+ V+ C ++
Sbjct: 178 YTAFDGIADKDVVSWNAIIAGFSENNMMADAFRSFCLMLKEPTEPNYATIANVLPVCASM 237
Query: 164 GSRALCE---LIHGLTIKLG-LILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISW 219
C IH ++ L V V NS++ Y + ++ A +F M KD++SW
Sbjct: 238 DKNIACRSGRQIHSYVVQRSWLQTHVFVCNSLVSFYLRVGRIEEAASLFTRMGSKDLVSW 297
Query: 220 TRMMGLFVDFEYAGDALKIFREM-RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
++ + A ++F + K + D+V +++++ V A L DL GK++H+ ++
Sbjct: 298 NVVIAGYASNCEWFKAFQLFHNLVHKGDVSPDSVTIISILPVCAQLTDLASGKEIHSYIL 357
Query: 279 LGG-LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
L + + N++I+ Y++ GD ++ F+ ++ K ++SW AI+ + + + L
Sbjct: 358 RHSYLLEDTSVGNALISFYARFGDTSAAYWAFSLMSTKDIISWNAILDAFADSPKQFQFL 417
Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGF---PRYRSVQNCL 394
N + E ++DS+T++S+L + + ++HG + +AG + N L
Sbjct: 418 NLLHHLLNEAI-TLDSVTILSLLKFCINVQGIGKVKEVHGYSVKAGLLHDEEEPKLGNAL 476
Query: 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD 454
+ +Y+KCGNV+ A+ +F + R +VS+N+++ GY +G + A L+ +M+ T D
Sbjct: 477 LDAYAKCGNVEYAHKIFLGLSERRTLVSYNSLLSGYVNSGSHDDAQMLFTEMSTT----D 532
Query: 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPS 490
+T+ ++ + N+ + +F + I+ ++P+
Sbjct: 533 LTTWSLMVRIYAESCCPNEAIGVFRE-IQARGMRPN 567
Score = 142 bits (358), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 111/411 (27%), Positives = 193/411 (46%), Gaps = 13/411 (3%)
Query: 139 NFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCL 198
NF SG + L V++ C ++ +HG KLG I V+ SVL+MY+
Sbjct: 10 NFRLLSGFGTDHRVFLDVVKACASVSDLTSGRALHGCVFKLGHIACSEVSKSVLNMYAKC 69
Query: 199 MDLDAAIQIFREMECKDVISWTRMM-GLFVDFEYAGDALKIFREMR-KSRIICDTVALLN 256
+D ++FR+M+ D + W ++ GL V + ++ F+ M +V
Sbjct: 70 RRMDDCQKMFRQMDSLDPVVWNIVLTGLSV--SCGRETMRFFKAMHFADEPKPSSVTFAI 127
Query: 257 LISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDL-DSSRSVFNQITEK 315
++ + LGD GK +H+ ++ GL+ + + N++++MY+K G + + + F+ I +K
Sbjct: 128 VLPLCVRLGDSYNGKSMHSYIIKAGLEKDTLVGNALVSMYAKFGFIFPDAYTAFDGIADK 187
Query: 316 SLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEIC--- 372
+VSW AII+G+ +N +A F M +E T+ + T+ ++L + C
Sbjct: 188 DVVSWNAIIAGFSENNMMADAFRSFCLMLKEPTEP-NYATIANVLPVCASMDKNIACRSG 246
Query: 373 LQLHGIAFEAGFPR-YRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYG 431
Q+H + + + + V N L+S Y + G ++ A +F MG +D+VSWN +I GY
Sbjct: 247 RQIHSYVVQRSWLQTHVFVCNSLVSFYLRVGRIEEAASLFTRMG-SKDLVSWNVVIAGYA 305
Query: 432 VNGHGETALALYHKMTETGEV-PDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPS 490
N A L+H + G+V PDS T +SIL C G I + ++ + +
Sbjct: 306 SNCEWFKAFQLFHNLVHKGDVSPDSVTIISILPVCAQLTDLASGKEIHSYILRHSYLLED 365
Query: 491 QEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQ 541
++ AR G S A+ A L+ W A+L +FQ
Sbjct: 366 TSVGNALISFYARFGDTS-AAYWAFSLMSTKDIISWNAILDAFADSPKQFQ 415
Score = 126 bits (316), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 115/444 (25%), Positives = 192/444 (43%), Gaps = 55/444 (12%)
Query: 63 MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIV 122
+LSG + + V+ A A + +L R++HG + K G ++C+ +
Sbjct: 13 LLSGFGTDHRVFLDVVKACASVSDLTSGRALHGCVFKLGH-------------IACSEVS 59
Query: 123 AGFIN-----------NKLFQQAVLL--------------------FNFFRGSGLV---- 147
+N K+F+Q L FF+
Sbjct: 60 KSVLNMYAKCRRMDDCQKMFRQMDSLDPVVWNIVLTGLSVSCGRETMRFFKAMHFADEPK 119
Query: 148 PNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCL-MDLDAAIQ 206
P++VT V+ CV LG + +H IK GL D V N+++ MY+ A
Sbjct: 120 PSSVTFAIVLPLCVRLGDSYNGKSMHSYIIKAGLEKDTLVGNALVSMYAKFGFIFPDAYT 179
Query: 207 IFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGD 266
F + KDV+SW ++ F + DA + F M K + + N++ V A +
Sbjct: 180 AFDGIADKDVVSWNAIIAGFSENNMMADAFRSFCLMLKEPTEPNYATIANVLPVCASMDK 239
Query: 267 ---LKRGKQLHAQVV-LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTA 322
+ G+Q+H+ VV LQ+ + + NS+++ Y + G ++ + S+F ++ K LVSW
Sbjct: 240 NIACRSGRQIHSYVVQRSWLQTHVFVCNSLVSFYLRVGRIEEAASLFTRMGSKDLVSWNV 299
Query: 323 IISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEA 382
+I+GY N +A F + + S DS+T++SIL +L L ++H
Sbjct: 300 VIAGYASNCEWFKAFQLFHNLVHKGDVSPDSVTIISILPVCAQLTDLASGKEIHSYILRH 359
Query: 383 GF-PRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALA 441
+ SV N LIS Y++ G+ AY F M +D++SWN I+ + + L
Sbjct: 360 SYLLEDTSVGNALISFYARFGDTSAAYWAFSLMS-TKDIISWNAILDAFADSPKQFQFLN 418
Query: 442 LYHKMTETGEVPDSSTYLSILNAC 465
L H + DS T LS+L C
Sbjct: 419 LLHHLLNEAITLDSVTILSLLKFC 442
Score = 72.8 bits (177), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 105/220 (47%), Gaps = 31/220 (14%)
Query: 6 YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
YNS LLS Y SG +A+ LF E+ ++ +WS+++ Y+ + +++ F +
Sbjct: 505 YNS--LLSGYVNSGSHDDAQMLFTEMSTTDLTTWSLMVRIYAESCCPNEAIGVFREIQAR 562
Query: 66 GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG-----------LKNPY 114
G+ PN+ T++ +L A L +L L R HG +++ GL +G LK+ Y
Sbjct: 563 GMRPNTVTIMNLLPVCAQLASLHLVRQCHGYIIRGGLGDIRLKGTLLDVYAKCGSLKHAY 622
Query: 115 ----------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
LV A+VAG+ + ++A+++++ S + P+ V + T++ C G
Sbjct: 623 SVFQSDARRDLVMFTAMVAGYAVHGRGKEALMIYSHMTESNIKPDHVFITTMLTACCHAG 682
Query: 165 SRALCELIH-GLTIKLGLILDVSVNNSVLDMYSCLMDLDA 203
LI GL I I V ++ Y+C +DL A
Sbjct: 683 ------LIQDGLQI-YDSIRTVHGMKPTMEQYACAVDLIA 715
>sp|Q9M1V3|PP296_ARATH Pentatricopeptide repeat-containing protein At3g63370
OS=Arabidopsis thaliana GN=PCMP-H83 PE=2 SV=2
Length = 960
Score = 238 bits (608), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 167/616 (27%), Positives = 300/616 (48%), Gaps = 70/616 (11%)
Query: 11 LLSNYFKSGKIKEAENLFDEIPEK-NVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLP 69
L+S Y K+ + A LFD EK + V W+ ++ YS +G ++++ F M ++G P
Sbjct: 223 LVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAP 282
Query: 70 NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD-----------------------L 106
NS+T+V L A G +L + IH ++K S +
Sbjct: 283 NSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERI 342
Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
+ N +V+ N+++ G++ N ++++A+ F+ +G + V+M ++I L +
Sbjct: 343 LRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNL 402
Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYS-----CLMDLDAAIQIFREMECKDVISWTR 221
+H IK G ++ V N+++DMYS C M + F M KD+ISWT
Sbjct: 403 LAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMG-----RAFLRMHDKDLISWTT 457
Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
++ + + +AL++FR++ K R+ D + L +++ +++L + K++H ++ G
Sbjct: 458 VIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKG 517
Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFI 341
L + + N ++ +Y KC ++ + VF I K +VSWT++IS NG EA+ F
Sbjct: 518 LLDTV-IQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFR 576
Query: 342 KMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401
+M E S DS+ L+ IL+A+ L+AL ++H GF S+ ++ Y+ C
Sbjct: 577 RM-VETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACC 635
Query: 402 GNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461
G++ A VF+ + + ++ + ++I YG++G G+ A+ L+ KM PD ++L++
Sbjct: 636 GDLQSAKAVFDRIE-RKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLAL 694
Query: 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521
L AC HAGL ++G M E +++P EHY C+VD+L RA C+ +A +
Sbjct: 695 LYACSHAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEP 754
Query: 522 GPNIWRALLSGCVLHV---------------------------------GRFQDAEALRS 548
+W ALL+ C H GR+ D E +R+
Sbjct: 755 TAEVWCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRA 814
Query: 549 GSQKKGIIKIPGISFL 564
+ G+ K PG S++
Sbjct: 815 KMKASGMEKHPGCSWI 830
Score = 197 bits (502), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 142/494 (28%), Positives = 244/494 (49%), Gaps = 27/494 (5%)
Query: 8 SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
+ KL+ Y K G + +AE +FDE+P++ +W+ +I Y NG ++ + +M + G+
Sbjct: 119 AGKLVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGV 178
Query: 68 LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD---------------------- 105
+ +L A A L+++ +H L+VK G S
Sbjct: 179 PLGLSSFPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARR 238
Query: 106 LFEGLKNP-YLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164
LF+G + V N+I++ + + + + LF +G PN+ T+++ + C
Sbjct: 239 LFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFS 298
Query: 165 SRALCELIHGLTIKLGL-ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
L + IH +K ++ V N+++ MY+ + A +I R+M DV++W ++
Sbjct: 299 YAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLI 358
Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
+V +AL+ F +M + D V++ ++I+ + L +L G +LHA V+ G
Sbjct: 359 KGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWD 418
Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
S L++ N++I MYSKC F ++ +K L+SWT +I+GY QN C EAL F +
Sbjct: 419 SNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDV 478
Query: 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403
+++ + +D + L SIL AS L ++ I ++H G +QN L+ Y KC N
Sbjct: 479 AKKRME-IDEMILGSILRASSVLKSMLIVKEIHCHILRKGLLD-TVIQNELVDVYGKCRN 536
Query: 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463
+ A VFE + +DVVSW ++I +NG+ A+ L+ +M ETG DS L IL+
Sbjct: 537 MGYATRVFESIKG-KDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCILS 595
Query: 464 ACGHAGLTNDGLVI 477
A N G I
Sbjct: 596 AAASLSALNKGREI 609
Score = 166 bits (419), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 104/387 (26%), Positives = 206/387 (53%), Gaps = 24/387 (6%)
Query: 6 YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
Y + L++ Y + GK+ +AE + ++ +VV+W+ +I GY N ++++++ FS M+ +
Sbjct: 321 YVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAA 380
Query: 66 GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL------------------- 106
G + +M ++ A+ L NL +H ++K G +S+L
Sbjct: 381 GHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYM 440
Query: 107 ---FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
F + + L+S ++AG+ N +A+ LF + + + + +++R L
Sbjct: 441 GRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVL 500
Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
S + + IH ++ GL LD + N ++D+Y ++ A ++F ++ KDV+SWT M+
Sbjct: 501 KSMLIVKEIHCHILRKGL-LDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMI 559
Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ 283
+A+++FR M ++ + D+VALL ++S A L L +G+++H ++ G
Sbjct: 560 SSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFC 619
Query: 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343
E ++ +++ MY+ CGDL S+++VF++I K L+ +T++I+ Y +GC + A+ F KM
Sbjct: 620 LEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKM 679
Query: 344 RQEKTDSVDSITLVSILTASGELAALE 370
R E S D I+ +++L A L+
Sbjct: 680 RHENV-SPDHISFLALLYACSHAGLLD 705
Score = 100 bits (249), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 128/271 (47%), Gaps = 7/271 (2%)
Query: 267 LKRGKQLHAQVVLGGLQSELR-LSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIIS 325
+ +G+QLH+++ EL L+ ++ MY KCG LD + VF+++ +++ +W +I
Sbjct: 96 VSQGRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIG 155
Query: 326 GYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFP 385
YV NG AL + MR E + + ++L A +L + +LH + + G+
Sbjct: 156 AYVSNGEPASALALYWNMRVEGV-PLGLSSFPALLKACAKLRDIRSGSELHSLLVKLGYH 214
Query: 386 RYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHK 445
+ N L+S Y+K ++ A +F+ D V WN+I+ Y +G L L+ +
Sbjct: 215 STGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFRE 274
Query: 446 MTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGC--VVDLLAR 503
M TG P+S T +S L AC G I +++ + S E Y C ++ + R
Sbjct: 275 MHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSS--THSSELYVCNALIAMYTR 332
Query: 504 AGCLSDASGLAGKLLEGMGPNIWRALLSGCV 534
G + A + + + W +L+ G V
Sbjct: 333 CGKMPQAERIL-RQMNNADVVTWNSLIKGYV 362
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 86/184 (46%), Gaps = 22/184 (11%)
Query: 3 IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
+D ++L+ Y K + A +F+ I K+VVSW+ +I ++NG ++++ F M
Sbjct: 519 LDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRM 578
Query: 63 MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK--FGLESDL-------------- 106
+ +GL +S ++ +L AAA L L R IH +++ F LE +
Sbjct: 579 VETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDL 638
Query: 107 ------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
F+ ++ L+ +++ + + + AV LF+ R + P+ ++ L ++ C
Sbjct: 639 QSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYAC 698
Query: 161 VALG 164
G
Sbjct: 699 SHAG 702
Score = 34.3 bits (77), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/96 (19%), Positives = 48/96 (50%)
Query: 2 CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
C++ + ++ Y G ++ A+ +FD I K ++ ++ +I+ Y ++G + +++ F
Sbjct: 619 CLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDK 678
Query: 62 MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLM 97
M + P+ + + +L A + L+ R +M
Sbjct: 679 MRHENVSPDHISFLALLYACSHAGLLDEGRGFLKIM 714
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 238 bits (608), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 159/516 (30%), Positives = 258/516 (50%), Gaps = 41/516 (7%)
Query: 84 LQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRG 143
L NL L R++ K+ LF + P + N+++ GF+NN LF + + LF R
Sbjct: 47 LVNLLLKRTLFFRQTKYSYL--LFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRK 104
Query: 144 SGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDA 203
GL + T V++ C SR L +H L +K G DV+ S+L +YS L+
Sbjct: 105 HGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLND 164
Query: 204 AIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAI 263
A ++F E+ + V++WT + + +A+ +F++M + + D+ ++ ++S
Sbjct: 165 AHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVH 224
Query: 264 LGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAI 323
+GDL G+ + + +Q + +++ +Y+KCG ++ +RSVF+ + EK +V+W+ +
Sbjct: 225 VGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTM 284
Query: 324 ISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG 383
I GY N +E + F++M QE D ++V L++ L AL++ +
Sbjct: 285 IQGYASNSFPKEGIELFLQMLQENLKP-DQFSIVGFLSSCASLGALDLGEWGISLIDRHE 343
Query: 384 FPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALY 443
F + N LI Y+KCG + + VF+EM +D+V N I G NGH + + A++
Sbjct: 344 FLTNLFMANALIDMYAKCGAMARGFEVFKEMK-EKDIVIMNAAISGLAKNGHVKLSFAVF 402
Query: 444 HKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLAR 503
+ + G PD ST+L +L C HAGL DGL FN + +K + EHYGC+VDL R
Sbjct: 403 GQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGR 462
Query: 504 AGCLSDASGLAGKLLEGMGPN--IWRALLSGCVL------------------------HV 537
AG L DA L + M PN +W ALLSGC L +V
Sbjct: 463 AGMLDDAYRLICDM--PMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYV 520
Query: 538 ---------GRFQDAEALRSGSQKKGIIKIPGISFL 564
GR+ +A +R KKG+ KIPG S++
Sbjct: 521 QLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWI 556
Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/427 (21%), Positives = 194/427 (45%), Gaps = 26/427 (6%)
Query: 27 LFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQN 86
LF N+ ++ +I+G+ N +++ F + GL + FT VL A +
Sbjct: 67 LFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASS 126
Query: 87 LELARSIHGLMVKFGLESD----------------------LFEGLKNPYLVSCNAIVAG 124
+L +H L+VK G D LF+ + + +V+ A+ +G
Sbjct: 127 RKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSG 186
Query: 125 FINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILD 184
+ + ++A+ LF G+ P++ ++ V+ CV +G E I ++ + +
Sbjct: 187 YTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKN 246
Query: 185 VSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRK 244
V +++++Y+ ++ A +F M KD+++W+ M+ + + + +++F +M +
Sbjct: 247 SFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQ 306
Query: 245 SRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDS 304
+ D +++ +S A LG L G+ + + + L ++N++I MY+KCG +
Sbjct: 307 ENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMAR 366
Query: 305 SRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASG 364
VF ++ EK +V A ISG +NG + + F + + S D T + +L
Sbjct: 367 GFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGI-SPDGSTFLGLLCGCV 425
Query: 365 ELAALEICLQLHGIAFEAGFPRYRSVQN--CLISSYSKCGNVDLAYIVFEEMGFLRDVVS 422
++ L+ A + R+V++ C++ + + G +D AY + +M + +
Sbjct: 426 HAGLIQDGLRFFN-AISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIV 484
Query: 423 WNTIIYG 429
W ++ G
Sbjct: 485 WGALLSG 491
Score = 99.0 bits (245), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 73/342 (21%), Positives = 161/342 (47%), Gaps = 24/342 (7%)
Query: 9 SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLL 68
+ LLS Y SG++ +A LFDEIP+++VV+W+ + GY+ +G H +++ F M+ G+
Sbjct: 150 TSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVK 209
Query: 69 PNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD----------------------L 106
P+S+ +V VL A + +L+ I M + ++ + +
Sbjct: 210 PDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSV 269
Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
F+ + +V+ + ++ G+ +N ++ + LF L P+ +++ + C +LG+
Sbjct: 270 FDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGAL 329
Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
L E L + + ++ + N+++DMY+ + ++F+EM+ KD++ +
Sbjct: 330 DLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGL 389
Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG-KQLHAQVVLGGLQSE 285
+ + +F + K I D L L+ G ++ G + +A + L+
Sbjct: 390 AKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRT 449
Query: 286 LRLSNSIIAMYSKCGDLDSS-RSVFNQITEKSLVSWTAIISG 326
+ ++ ++ + G LD + R + + + + W A++SG
Sbjct: 450 VEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSG 491
Score = 35.8 bits (81), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 72/170 (42%), Gaps = 17/170 (10%)
Query: 6 YNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65
+ ++ L+ Y K G + +F E+ EK++V + I G + NG + S F
Sbjct: 349 FMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKL 408
Query: 66 GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGF 125
G+ P+ T +G+L +H +++ GL F + Y + G
Sbjct: 409 GISPDGSTFLGLLCGC-----------VHAGLIQDGLR--FFNAISCVYALKRTVEHYGC 455
Query: 126 INNKLFQQAVLLFNFFR---GSGLVPNAVTMLTVIRGCVALGSRALCELI 172
+ + L+ +A +L + +R + PNA+ ++ GC + L E +
Sbjct: 456 MVD-LWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETV 504
>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070
OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
Length = 786
Score = 237 bits (605), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 164/574 (28%), Positives = 275/574 (47%), Gaps = 91/574 (15%)
Query: 1 PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
P ++ + +LS Y K G + FD++P+++ VSW+ +I GY G + K+++
Sbjct: 76 PLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMG 135
Query: 61 HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--LFEGLKNPYLVSC 118
M+ G+ P FT+ VL + A + +E + +H +VK GL + + L N Y
Sbjct: 136 DMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCG 195
Query: 119 NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIK 178
+ ++A F+ +++ V+R
Sbjct: 196 DPMMAKFVFDRM-------------------------VVR-------------------- 210
Query: 179 LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKI 238
D+S N+++ ++ + +D A+ F +M +D+++W M+ F Y AL I
Sbjct: 211 -----DISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDI 265
Query: 239 FREM-RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYS 297
F +M R S + D L +++S A L L GKQ+H+ +V G + N++I+MYS
Sbjct: 266 FSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYS 325
Query: 298 KC---------------------------------GDLDSSRSVFNQITEKSLVSWTAII 324
+C GD++ ++++F + ++ +V+WTA+I
Sbjct: 326 RCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMI 385
Query: 325 SGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGF 384
GY Q+G EA+N F M +S TL ++L+ + LA+L Q+HG A ++G
Sbjct: 386 VGYEQHGSYGEAINLFRSM-VGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGE 444
Query: 385 PRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH 444
SV N LI+ Y+K GN+ A F+ + RD VSW ++I +GH E AL L+
Sbjct: 445 IYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFE 504
Query: 445 KMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARA 504
M G PD TY+ + +AC HAGL N G F+ M + +K+ P+ HY C+VDL RA
Sbjct: 505 TMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRA 564
Query: 505 GCLSDASGLAGKLLEGMGPNI--WRALLSGCVLH 536
G L +A K+ + P++ W +LLS C +H
Sbjct: 565 GLLQEAQEFIEKM--PIEPDVVTWGSLLSACRVH 596
Score = 130 bits (327), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 116/466 (24%), Positives = 197/466 (42%), Gaps = 103/466 (22%)
Query: 148 PNAVTMLTVIRGCVAL--------GSRALCELIHGLTIKLGLILDVSVN----------- 188
P +++ T++ C L R +L+H IK GL+ V +
Sbjct: 4 PVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTG 63
Query: 189 --------------------NSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD 228
N+VL YS D+D+ + F ++ +D +SWT M+ + +
Sbjct: 64 YALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKN 123
Query: 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRL 288
A+++ +M K I L N+++ A ++ GK++H+ +V GL+ + +
Sbjct: 124 IGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSV 183
Query: 289 SNSIIAMYSKCGD-------------------------------LDSSRSVFNQITEKSL 317
SNS++ MY+KCGD +D + + F Q+ E+ +
Sbjct: 184 SNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDI 243
Query: 318 VSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHG 377
V+W ++ISG+ Q G AL+ F KM ++ S D TL S+L+A L L I Q+H
Sbjct: 244 VTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHS 303
Query: 378 IAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMG---------------------- 415
GF V N LIS YS+CG V+ A + E+ G
Sbjct: 304 HIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDM 363
Query: 416 ------FL----RDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465
F+ RDVV+W +I GY +G A+ L+ M G+ P+S T ++L+
Sbjct: 364 NQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVA 423
Query: 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDAS 511
+ G I ++ ++ S ++ + A+AG ++ AS
Sbjct: 424 SSLASLSHGKQIHGSAVKSGEIY-SVSVSNALITMYAKAGNITSAS 468
>sp|O64705|PP184_ARATH Pentatricopeptide repeat-containing protein At2g34400
OS=Arabidopsis thaliana GN=PCMP-E23 PE=3 SV=2
Length = 621
Score = 237 bits (604), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 146/414 (35%), Positives = 224/414 (54%), Gaps = 10/414 (2%)
Query: 100 FGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVL-LFNFFRGSGLVPNAVTMLTVIR 158
F S LF + P S N ++ G N +A L L+ + SGL P+ T V
Sbjct: 81 FNYSSFLFSVTEEPNHYSFNYMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFI 140
Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
C L + +H K+GL DV +N+S++ MY+ + A ++F E+ +D +S
Sbjct: 141 ACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVS 200
Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
W M+ + + YA DA+ +FR+M + D L++++ + LGDL+ G+ L +
Sbjct: 201 WNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAI 260
Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
+ L + +I+MY KCGDLDS+R VFNQ+ +K V+WTA+I+ Y QNG + EA
Sbjct: 261 TKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFK 320
Query: 339 QFIKMRQEKTD-SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397
F +M EKT S D+ TL ++L+A G + ALE+ Q+ A E V L+
Sbjct: 321 LFFEM--EKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDM 378
Query: 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS- 456
Y KCG V+ A VFE M +++ +WN +I Y GH + AL L+ +M+ VP S
Sbjct: 379 YGKCGRVEEALRVFEAMP-VKNEATWNAMITAYAHQGHAKEALLLFDRMS----VPPSDI 433
Query: 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510
T++ +L+AC HAGL + G F++M + P EHY ++DLL+RAG L +A
Sbjct: 434 TFIGVLSACVHAGLVHQGCRYFHEMSSMFGLVPKIEHYTNIIDLLSRAGMLDEA 487
Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 111/412 (26%), Positives = 195/412 (47%), Gaps = 32/412 (7%)
Query: 27 LFDEIPEKNVVSWSIVIHGYSINGF--HEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGL 84
LF E N S++ +I G + N + HE ++ + M SGL P+ FT V +A A L
Sbjct: 87 LFSVTEEPNHYSFNYMIRGLT-NTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKL 145
Query: 85 QNLELARSIHGLMVKFGLESD----------------------LFEGLKNPYLVSCNAIV 122
+ + + RS+H + K GLE D LF+ + VS N+++
Sbjct: 146 EEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMI 205
Query: 123 AGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLI 182
+G+ + A+ LF G P+ T+++++ C LG L+ + I +
Sbjct: 206 SGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIG 265
Query: 183 LDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREM 242
L + + ++ MY DLD+A ++F +M KD ++WT M+ ++ + +A K+F EM
Sbjct: 266 LSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEM 325
Query: 243 RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDL 302
K+ + D L ++S +G L+ GKQ+ LQ + ++ ++ MY KCG +
Sbjct: 326 EKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRV 385
Query: 303 DSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTA 362
+ + VF + K+ +W A+I+ Y G A+EAL F +M +D IT + +L+A
Sbjct: 386 EEALRVFEAMPVKNEATWNAMITAYAHQGHAKEALLLFDRMSVPPSD----ITFIGVLSA 441
Query: 363 SGELAAL-EICLQLHGIAFEAGF-PRYRSVQNCLISSYSKCGNVDLAYIVFE 412
+ + C H ++ G P+ N +I S+ G +D A+ E
Sbjct: 442 CVHAGLVHQGCRYFHEMSSMFGLVPKIEHYTN-IIDLLSRAGMLDEAWEFME 492
Score = 106 bits (264), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 106/448 (23%), Positives = 197/448 (43%), Gaps = 41/448 (9%)
Query: 4 DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
D + + L+ Y K G++ A LFDEI E++ VSW+ +I GYS G+ + +M F M
Sbjct: 166 DVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDAMDLFRKME 225
Query: 64 LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMV--KFGLESDLFEGLKNPY------- 114
G P+ T+V +L A + L +L R + + + K GL + L L + Y
Sbjct: 226 EEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLISMYGKCGDLD 285
Query: 115 -------------LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
V+ A++ + N +A LF +G+ P+A T+ TV+ C
Sbjct: 286 SARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACG 345
Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
++G+ L + I +L L ++ V ++DMY ++ A+++F M K+ +W
Sbjct: 346 SVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNEATWNA 405
Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG-KQLHAQVVLG 280
M+ + +A +AL +F M + + + ++S G + +G + H +
Sbjct: 406 MITAYAHQGHAKEALLLFDRM---SVPPSDITFIGVLSACVHAGLVHQGCRYFHEMSSMF 462
Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQN----GCAREA 336
GL ++ +II + S+ G LD + + K A I G +A
Sbjct: 463 GLVPKIEHYTNIIDLLSRAGMLDEAWEFMERFPGKPDEIMLAAILGACHKRKDVAIREKA 522
Query: 337 LNQFIKMRQEKT--DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
+ ++M++ K + V S +++ + E A + ++ G+ G + ++ L
Sbjct: 523 MRMLMEMKEAKNAGNYVISSNVLADMKMWDESAKMRALMRDRGVVKTPGCS-WIEIEGEL 581
Query: 395 I-----SSYSKCGNVD---LAYIVFEEM 414
+ S Y +CG D L ++ EEM
Sbjct: 582 MEFLAGSDYLQCGREDSGSLFDLLVEEM 609
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 112/240 (46%), Gaps = 13/240 (5%)
Query: 239 FREMRKSRIICDTVALLN-LISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYS 297
F E R+ + D + LL ISVN + +Q+ AQ++L ++ N +I
Sbjct: 28 FEEARRGDLERDFLFLLKKCISVNQL-------RQIQAQMLLHSVEK----PNFLIPKAV 76
Query: 298 KCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLV 357
+ GD + S +F+ E + S+ +I G EA + + D T
Sbjct: 77 ELGDFNYSSFLFSVTEEPNHYSFNYMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYN 136
Query: 358 SILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFL 417
+ A +L + + +H F+ G R + + LI Y+KCG V A +F+E+
Sbjct: 137 FVFIACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEIT-E 195
Query: 418 RDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVI 477
RD VSWN++I GY G+ + A+ L+ KM E G PD T +S+L AC H G G ++
Sbjct: 196 RDTVSWNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLL 255
>sp|Q9LIE7|PP246_ARATH Pentatricopeptide repeat-containing protein At3g22150,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E95 PE=2
SV=1
Length = 820
Score = 236 bits (603), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 166/549 (30%), Positives = 281/549 (51%), Gaps = 34/549 (6%)
Query: 27 LFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQN 86
+FD + KNVV+W+ +I Y G + ++ + F MM + P+ + V V A + ++
Sbjct: 170 VFDNMRRKNVVAWNTLISWYVKTGRNAEACRQFGIMMRMEVKPSPVSFVNVFPAVSISRS 229
Query: 87 LELARSIHGLMVKFGLE--SDLF---------------EGLKNPYLVSC--------NAI 121
++ A +GLM+K G E DLF E + + SC N +
Sbjct: 230 IKKANVFYGLMLKLGDEYVKDLFVVSSAISMYAELGDIESSRRVF-DSCVERNIEVWNTM 288
Query: 122 VAGFINNKLFQQAVLLFNFFRGSG-LVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLG 180
+ ++ N +++ LF GS +V + VT L AL L HG K
Sbjct: 289 IGVYVQNDCLVESIELFLEAIGSKEIVSDEVTYLLAASAVSALQQVELGRQFHGFVSKNF 348
Query: 181 LILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFR 240
L + + NS++ MYS + + +F M +DV+SW M+ FV + L +
Sbjct: 349 RELPIVIVNSLMVMYSRCGSVHKSFGVFLSMRERDVVSWNTMISAFVQNGLDDEGLMLVY 408
Query: 241 EMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCG 300
EM+K D + + L+S + L + + GKQ HA ++ G+Q E +++ +I MYSK G
Sbjct: 409 EMQKQGFKIDYITVTALLSAASNLRNKEIGKQTHAFLIRQGIQFE-GMNSYLIDMYSKSG 467
Query: 301 DLDSSRSVF--NQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVS 358
+ S+ +F + E+ +W ++ISGY QNG + F KM ++ +++T+ S
Sbjct: 468 LIRISQKLFEGSGYAERDQATWNSMISGYTQNGHTEKTFLVFRKMLEQNIRP-NAVTVAS 526
Query: 359 ILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLR 418
IL A ++ ++++ QLHG + + V + L+ YSK G + A +F + R
Sbjct: 527 ILPACSQIGSVDLGKQLHGFSIRQYLDQNVFVASALVDMYSKAGAIKYAEDMFSQTK-ER 585
Query: 419 DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIF 478
+ V++ T+I GYG +G GE A++L+ M E+G PD+ T++++L+AC ++GL ++GL IF
Sbjct: 586 NSVTYTTMILGYGQHGMGERAISLFLSMQESGIKPDAITFVAVLSACSYSGLIDEGLKIF 645
Query: 479 NQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL-LEGMGPNIWRALLSGCVLHV 537
+M E ++PS EHY C+ D+L R G +++A L EG +W +LL C LH
Sbjct: 646 EEMREVYNIQPSSEHYCCITDMLGRVGRVNEAYEFVKGLGEEGNIAELWGSLLGSCKLH- 704
Query: 538 GRFQDAEAL 546
G + AE +
Sbjct: 705 GELELAETV 713
Score = 192 bits (489), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 142/559 (25%), Positives = 263/559 (47%), Gaps = 47/559 (8%)
Query: 1 PCIDPYNSS--KLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKA 58
P + P S LS + G + A LFD IP+ V W+ +I G+ N +++
Sbjct: 33 PTLTPQTPSIRSRLSKICQDGNPQLARQLFDAIPKPTTVLWNTIIIGFICNNLPHEALLF 92
Query: 59 FSHMMLSGLLPN--SFTMVGVLVAAAGLQNLELARSIHGLMVK----------------- 99
+S M + N ++T L A A +NL+ +++H +++
Sbjct: 93 YSRMKKTAPFTNCDAYTYSSTLKACAETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMY 152
Query: 100 -----------FGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVP 148
+ + +F+ ++ +V+ N +++ ++ +A F + P
Sbjct: 153 VSCLNAPDCFEYDVVRKVFDNMRRKNVVAWNTLISWYVKTGRNAEACRQFGIMMRMEVKP 212
Query: 149 NAVTMLTVIRGCVALGSRALCELIHGLTIKLG--LILDVSVNNSVLDMYSCLMDLDAAIQ 206
+ V+ + V S + +GL +KLG + D+ V +S + MY+ L D++++ +
Sbjct: 213 SPVSFVNVFPAVSISRSIKKANVFYGLMLKLGDEYVKDLFVVSSAISMYAELGDIESSRR 272
Query: 207 IFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSR-IICDTVALLNLISVNAILG 265
+F +++ W M+G++V + +++++F E S+ I+ D V L S + L
Sbjct: 273 VFDSCVERNIEVWNTMIGVYVQNDCLVESIELFLEAIGSKEIVSDEVTYLLAASAVSALQ 332
Query: 266 DLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIIS 325
++ G+Q H V + + + NS++ MYS+CG + S VF + E+ +VSW +IS
Sbjct: 333 QVELGRQFHGFVSKNFRELPIVIVNSLMVMYSRCGSVHKSFGVFLSMRERDVVSWNTMIS 392
Query: 326 GYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFP 385
+VQNG E L +M Q++ +D IT+ ++L+A+ L EI Q H G
Sbjct: 393 AFVQNGLDDEGLMLVYEM-QKQGFKIDYITVTALLSAASNLRNKEIGKQTHAFLIRQGI- 450
Query: 386 RYRSVQNCLISSYSKCGNVDLAYIVFEEMGFL-RDVVSWNTIIYGYGVNGHGETALALYH 444
++ + + LI YSK G + ++ +FE G+ RD +WN++I GY NGH E ++
Sbjct: 451 QFEGMNSYLIDMYSKSGLIRISQKLFEGSGYAERDQATWNSMISGYTQNGHTEKTFLVFR 510
Query: 445 KMTETGEVPDSSTYLSILNACGHAGLTNDGLVI----FNQMIEENKVKPSQEHYGCVVDL 500
KM E P++ T SIL AC G + G + Q +++N S +VD+
Sbjct: 511 KMLEQNIRPNAVTVASILPACSQIGSVDLGKQLHGFSIRQYLDQNVFVAS-----ALVDM 565
Query: 501 LARAGCLSDASGLAGKLLE 519
++AG + A + + E
Sbjct: 566 YSKAGAIKYAEDMFSQTKE 584
Score = 100 bits (248), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/294 (22%), Positives = 144/294 (48%), Gaps = 31/294 (10%)
Query: 11 LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70
L+ Y + G + ++ +F + E++VVSW+ +I + NG ++ + M G +
Sbjct: 359 LMVMYSRCGSVHKSFGVFLSMRERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFKID 418
Query: 71 SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLV-------------- 116
T+ +L AA+ L+N E+ + H +++ G++ FEG+ N YL+
Sbjct: 419 YITVTALLSAASNLRNKEIGKQTHAFLIRQGIQ---FEGM-NSYLIDMYSKSGLIRISQK 474
Query: 117 -------------SCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163
+ N++++G+ N ++ L+F + PNAVT+ +++ C +
Sbjct: 475 LFEGSGYAERDQATWNSMISGYTQNGHTEKTFLVFRKMLEQNIRPNAVTVASILPACSQI 534
Query: 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM 223
GS L + +HG +I+ L +V V ++++DMYS + A +F + + ++ +++T M+
Sbjct: 535 GSVDLGKQLHGFSIRQYLDQNVFVASALVDMYSKAGAIKYAEDMFSQTKERNSVTYTTMI 594
Query: 224 GLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
+ A+ +F M++S I D + + ++S + G + G ++ ++
Sbjct: 595 LGYGQHGMGERAISLFLSMQESGIKPDAITFVAVLSACSYSGLIDEGLKIFEEM 648
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 8 SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
+S L+ Y K+G IK AE++F + E+N V+++ +I GY +G E+++ F M SG+
Sbjct: 559 ASALVDMYSKAGAIKYAEDMFSQTKERNSVTYTTMILGYGQHGMGERAISLFLSMQESGI 618
Query: 68 LPNSFTMVGVLVAAA-------GLQNLELARSIHGL 96
P++ T V VL A + GL+ E R ++ +
Sbjct: 619 KPDAITFVAVLSACSYSGLIDEGLKIFEEMREVYNI 654
>sp|O49287|PP127_ARATH Putative pentatricopeptide repeat-containing protein At1g77010,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E5 PE=3
SV=1
Length = 695
Score = 236 bits (601), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 171/590 (28%), Positives = 284/590 (48%), Gaps = 87/590 (14%)
Query: 8 SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67
++ LL Y +SGK+ A NLFDE+P++N SW+ +I GY +G S++ F M+
Sbjct: 65 ANHLLQMYSRSGKMGIARNLFDEMPDRNYFSWNTMIEGYMNSGEKGTSLRFFD--MMPER 122
Query: 68 LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFIN 127
S+ +V A AG L +AR LF + +V+ N+++ G+I
Sbjct: 123 DGYSWNVVVSGFAKAG--ELSVARR-------------LFNAMPEKDVVTLNSLLHGYIL 167
Query: 128 NKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSV 187
N ++A+ LF S +A+T+ TV++ C L + + IH + G+ D +
Sbjct: 168 NGYAEEALRLFKELNFSA---DAITLTTVLKACAELEALKCGKQIHAQILIGGVECDSKM 224
Query: 188 NNSVLDMYSCLMDLDAAIQIFREMECKD-------------------------------V 216
N+S++++Y+ DL A + ++ D V
Sbjct: 225 NSSLVNVYAKCGDLRMASYMLEQIREPDDHSLSALISGYANCGRVNESRGLFDRKSNRCV 284
Query: 217 ISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQ 276
I W M+ ++ +AL +F EMR + D+ L +I+ LG L+ GKQ+H
Sbjct: 285 ILWNSMISGYIANNMKMEALVLFNEMR-NETREDSRTLAAVINACIGLGFLETGKQMHCH 343
Query: 277 VVLGGLQSELRLSNSIIAMYSKCGD-------------------------------LDSS 305
GL ++ ++++++ MYSKCG +D +
Sbjct: 344 ACKFGLIDDIVVASTLLDMYSKCGSPMEACKLFSEVESYDTILLNSMIKVYFSCGRIDDA 403
Query: 306 RSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTD-SVDSITLVSILTASG 364
+ VF +I KSL+SW ++ +G+ QNGC E L F +M K D D ++L S+++A
Sbjct: 404 KRVFERIENKSLISWNSMTNGFSQNGCTVETLEYFHQMH--KLDLPTDEVSLSSVISACA 461
Query: 365 ELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWN 424
+++LE+ Q+ A G + V + LI Y KCG V+ VF+ M D V WN
Sbjct: 462 SISSLELGEQVFARATIVGLDSDQVVSSSLIDLYCKCGFVEHGRRVFDTM-VKSDEVPWN 520
Query: 425 TIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEE 484
++I GY NG G A+ L+ KM+ G P T++ +L AC + GL +G +F M +
Sbjct: 521 SMISGYATNGQGFEAIDLFKKMSVAGIRPTQITFMVVLTACNYCGLVEEGRKLFESMKVD 580
Query: 485 NKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCV 534
+ P +EH+ C+VDLLARAG + +A L ++ + ++W ++L GCV
Sbjct: 581 HGFVPDKEHFSCMVDLLARAGYVEEAINLVEEMPFDVDGSMWSSILRGCV 630
Score = 182 bits (461), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 150/582 (25%), Positives = 261/582 (44%), Gaps = 92/582 (15%)
Query: 1 PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
P D Y+ + ++S + K+G++ A LF+ +PEK+VV+ + ++HGY +NG+ E++++ F
Sbjct: 120 PERDGYSWNVVVSGFAKAGELSVARRLFNAMPEKDVVTLNSLLHGYILNGYAEEALRLFK 179
Query: 61 HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--------------- 105
+ S ++ T+ VL A A L+ L+ + IH ++ G+E D
Sbjct: 180 ELNFSA---DAITLTTVLKACAELEALKCGKQIHAQILIGGVECDSKMNSSLVNVYAKCG 236
Query: 106 --------------------------------------LFEGLKNPYLVSCNAIVAGFIN 127
LF+ N ++ N++++G+I
Sbjct: 237 DLRMASYMLEQIREPDDHSLSALISGYANCGRVNESRGLFDRKSNRCVILWNSMISGYIA 296
Query: 128 NKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSV 187
N + +A++LFN R ++ T+ VI C+ LG + +H K GLI D+ V
Sbjct: 297 NNMKMEALVLFNEMRNETR-EDSRTLAAVINACIGLGFLETGKQMHCHACKFGLIDDIVV 355
Query: 188 NNSVLDMYS--------CLM-----------------------DLDAAIQIFREMECKDV 216
+++LDMYS C + +D A ++F +E K +
Sbjct: 356 ASTLLDMYSKCGSPMEACKLFSEVESYDTILLNSMIKVYFSCGRIDDAKRVFERIENKSL 415
Query: 217 ISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQ 276
ISW M F + L+ F +M K + D V+L ++IS A + L+ G+Q+ A+
Sbjct: 416 ISWNSMTNGFSQNGCTVETLEYFHQMHKLDLPTDEVSLSSVISACASISSLELGEQVFAR 475
Query: 277 VVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
+ GL S+ +S+S+I +Y KCG ++ R VF+ + + V W ++ISGY NG EA
Sbjct: 476 ATIVGLDSDQVVSSSLIDLYCKCGFVEHGRRVFDTMVKSDEVPWNSMISGYATNGQGFEA 535
Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQL-HGIAFEAGFPRYRSVQNCLI 395
++ F KM IT + +LTA +E +L + + GF + +C++
Sbjct: 536 IDLFKKMSVAGIRPT-QITFMVVLTACNYCGLVEEGRKLFESMKVDHGFVPDKEHFSCMV 594
Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
++ G V+ A + EEM F D W++I+ G NG+ K+ E E +S
Sbjct: 595 DLLARAGYVEEAINLVEEMPFDVDGSMWSSILRGCVANGYKAMGKKAAEKIIEL-EPENS 653
Query: 456 STYLSILNACGHAGLTNDGLVIFNQMIEENKVK-PSQEHYGC 496
Y+ + +G ++ M E N K P C
Sbjct: 654 VAYVQLSAIFATSGDWESSALVRKLMRENNVTKNPGSSWTDC 695
Score = 99.4 bits (246), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 90/351 (25%), Positives = 152/351 (43%), Gaps = 77/351 (21%)
Query: 156 VIRGCVALGSRALCELIHGLTIKLGLILD-VSVNNSVLDMYSCLMDLDAAIQIFREMECK 214
+++ C + L +GL +K G + V V N +L MYS + A +F EM +
Sbjct: 32 LLQSCSSRNRETLWRQTNGLLLKKGFLSSIVIVANHLLQMYSRSGKMGIARNLFDEMPDR 91
Query: 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274
+ SW M+ +++ G +L+ F M + + G
Sbjct: 92 NYFSWNTMIEGYMNSGEKGTSLRFFDMMPE-----------------------RDGYSW- 127
Query: 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAR 334
N +++ ++K G+L +R +FN + EK +V+ +++ GY+ NG A
Sbjct: 128 ---------------NVVVSGFAKAGELSVARRLFNAMPEKDVVTLNSLLHGYILNGYAE 172
Query: 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394
EAL F +E S D+ITL ++L A EL AL+ Q+H G + + L
Sbjct: 173 EALRLF----KELNFSADAITLTTVLKACAELEALKCGKQIHAQILIGGVECDSKMNSSL 228
Query: 395 ISSYSKCGNVDLAYIVFEEM-------------GFL-----------------RDVVSWN 424
++ Y+KCG++ +A + E++ G+ R V+ WN
Sbjct: 229 VNVYAKCGDLRMASYMLEQIREPDDHSLSALISGYANCGRVNESRGLFDRKSNRCVILWN 288
Query: 425 TIIYGYGVNGHGETALALYHKM-TETGEVPDSSTYLSILNACGHAGLTNDG 474
++I GY N AL L+++M ET E DS T +++NAC G G
Sbjct: 289 SMISGYIANNMKMEALVLFNEMRNETRE--DSRTLAAVINACIGLGFLETG 337
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 129/277 (46%), Gaps = 47/277 (16%)
Query: 280 GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQ 339
G L S + ++N ++ MYS+ G + +R++F+++ +++ SW +I GY+ +G +L +
Sbjct: 56 GFLSSIVIVANHLLQMYSRSGKMGIARNLFDEMPDRNYFSWNTMIEGYMNSGEKGTSL-R 114
Query: 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399
F M E+ G ++ N ++S ++
Sbjct: 115 FFDMMPER----------------------------DGYSW-----------NVVVSGFA 135
Query: 400 KCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459
K G + +A +F M +DVV+ N++++GY +NG+ E AL L+ ++ + D+ T
Sbjct: 136 KAGELSVARRLFNAMP-EKDVVTLNSLLHGYILNGYAEEALRLFKELNFSA---DAITLT 191
Query: 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519
++L AC G I Q++ V+ + +V++ A+ G L AS + ++ E
Sbjct: 192 TVLKACAELEALKCGKQIHAQIL-IGGVECDSKMNSSLVNVYAKCGDLRMASYMLEQIRE 250
Query: 520 GMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGII 556
++ AL+SG + GR ++ L + +I
Sbjct: 251 PDDHSL-SALISG-YANCGRVNESRGLFDRKSNRCVI 285
>sp|Q0WN60|PPR48_ARATH Pentatricopeptide repeat-containing protein At1g18485
OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2
Length = 970
Score = 236 bits (601), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 162/565 (28%), Positives = 279/565 (49%), Gaps = 37/565 (6%)
Query: 4 DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
D + + L+S Y G + +A LFD +PE+N+VSW+ +I +S NGF E+S MM
Sbjct: 221 DVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMM 280
Query: 64 LS----GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL------------- 106
+P+ T+V VL A + + L + +HG VK L+ +L
Sbjct: 281 EENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKC 340
Query: 107 ---------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFR-----GSGLVPNAVT 152
F+ N +VS N +V GF F+ R G + + VT
Sbjct: 341 GCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGT---FDVLRQMLAGGEDVKADEVT 397
Query: 153 MLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME 212
+L + C + +H ++K + + V N+ + Y+ L A ++F +
Sbjct: 398 ILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIR 457
Query: 213 CKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQ 272
K V SW ++G +L +M+ S ++ D+ + +L+S + L L+ GK+
Sbjct: 458 SKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKE 517
Query: 273 LHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGC 332
+H ++ L+ +L + S++++Y CG+L + +++F+ + +KSLVSW +I+GY+QNG
Sbjct: 518 VHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGF 577
Query: 333 AREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN 392
AL F +M + I+++ + A L +L + + H A + +
Sbjct: 578 PDRALGVFRQMVLYGI-QLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIAC 636
Query: 393 CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV 452
LI Y+K G++ + VF + + SWN +I GYG++G + A+ L+ +M TG
Sbjct: 637 SLIDMYAKNGSITQSSKVFNGLK-EKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHN 695
Query: 453 PDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA-S 511
PD T+L +L AC H+GL ++GL +QM +KP+ +HY CV+D+L RAG L A
Sbjct: 696 PDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALR 755
Query: 512 GLAGKLLEGMGPNIWRALLSGCVLH 536
+A ++ E IW++LLS C +H
Sbjct: 756 VVAEEMSEEADVGIWKSLLSSCRIH 780
Score = 187 bits (476), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 154/583 (26%), Positives = 278/583 (47%), Gaps = 50/583 (8%)
Query: 9 SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM-LSGL 67
+++++ Y G ++ +FD + KN+ W+ VI YS N +++ ++ F M+ + L
Sbjct: 124 TRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDL 183
Query: 68 LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEG------------------ 109
LP+ FT V+ A AG+ ++ + ++HGL+VK GL D+F G
Sbjct: 184 LPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQ 243
Query: 110 ----LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFF---RGSG-LVPNAVTMLTVIRGCV 161
+ LVS N+++ F +N +++ LL G G +P+ T++TV+ C
Sbjct: 244 LFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCA 303
Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
L + +HG +KL L ++ +NN+++DMYS + A IF+ K+V+SW
Sbjct: 304 REREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNT 363
Query: 222 MMGLFVDFEYAGDALKIFREMRK-----SRIICDTVALLNLISVNAILGDLKRGKQLHAQ 276
M+G F GD F +R+ + D V +LN + V L K+LH
Sbjct: 364 MVG---GFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCY 420
Query: 277 VVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336
+ ++N+ +A Y+KCG L ++ VF+ I K++ SW A+I G+ Q+ R +
Sbjct: 421 SLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLS 480
Query: 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396
L+ ++M+ DS T+ S+L+A +L +L + ++HG R V ++S
Sbjct: 481 LDAHLQMKISGLLP-DSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLS 539
Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
Y CG + +F+ M + +VSWNT+I GY NG + AL ++ +M G
Sbjct: 540 LYIHCGELCTVQALFDAMED-KSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGI 598
Query: 457 TYLSILNACG-----HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDAS 511
+ + + AC G + + + ++ + S ++D+ A+ G ++ +S
Sbjct: 599 SMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACS------LIDMYAKNGSITQSS 652
Query: 512 GLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKG 554
+ L E + W A++ G +H G ++A L Q+ G
Sbjct: 653 KVFNGLKEKSTAS-WNAMIMGYGIH-GLAKEAIKLFEEMQRTG 693
Score = 135 bits (340), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 121/481 (25%), Positives = 218/481 (45%), Gaps = 28/481 (5%)
Query: 11 LLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSG--LL 68
L+ Y K G I A+ +F KNVVSW+ ++ G+S G + M+ G +
Sbjct: 333 LMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVK 392
Query: 69 PNSFTMVGVLVAAAGLQNLELARSIHGLMVK----------------------FGLESDL 106
+ T++ + L + +H +K +
Sbjct: 393 ADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRV 452
Query: 107 FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166
F G+++ + S NA++ G + + ++ + SGL+P++ T+ +++ C L S
Sbjct: 453 FHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSL 512
Query: 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLF 226
L + +HG I+ L D+ V SVL +Y +L +F ME K ++SW ++ +
Sbjct: 513 RLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGY 572
Query: 227 VDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286
+ + AL +FR+M I ++++ + ++L L+ G++ HA + L+ +
Sbjct: 573 LQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDA 632
Query: 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346
++ S+I MY+K G + S VFN + EKS SW A+I GY +G A+EA+ F +M Q
Sbjct: 633 FIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEM-QR 691
Query: 347 KTDSVDSITLVSILTASGELAALEICLQ-LHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405
+ D +T + +LTA + L+ L + G C+I + G +D
Sbjct: 692 TGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLD 751
Query: 406 LAY-IVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTE-TGEVPDSSTYLSILN 463
A +V EEM DV W +++ ++ + E + K+ E E P++ LS L
Sbjct: 752 KALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLY 811
Query: 464 A 464
A
Sbjct: 812 A 812
Score = 103 bits (257), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 148/308 (48%), Gaps = 25/308 (8%)
Query: 212 ECKDVISWTRMMGLFV-DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG 270
E D+ R + FV D E + DA + RE AL L+ + D++ G
Sbjct: 55 ETGDLDKSFRTVQEFVGDDESSSDAFLLVRE-----------ALGLLLQASGKRKDIEMG 103
Query: 271 KQLHAQVVLGG--LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYV 328
+++H Q+V G L+++ L II MY+ CG D SR VF+ + K+L W A+IS Y
Sbjct: 104 RKIH-QLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYS 162
Query: 329 QNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYR 388
+N E L FI+M D T ++ A ++ + I L +HG+ + G
Sbjct: 163 RNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDV 222
Query: 389 SVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETA-LALYHKMT 447
V N L+S Y G V A +F+ M R++VSWN++I + NG E + L L M
Sbjct: 223 FVGNALVSFYGTHGFVTDALQLFDIMP-ERNLVSWNSMIRVFSDNGFSEESFLLLGEMME 281
Query: 448 ETGE---VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY--GCVVDLLA 502
E G+ +PD +T +++L C G + + K++ +E ++D+ +
Sbjct: 282 ENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAV---KLRLDKELVLNNALMDMYS 338
Query: 503 RAGCLSDA 510
+ GC+++A
Sbjct: 339 KCGCITNA 346
>sp|Q9CA56|PP121_ARATH Pentatricopeptide repeat-containing protein At1g74600,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E69 PE=2
SV=1
Length = 895
Score = 234 bits (596), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 155/558 (27%), Positives = 273/558 (48%), Gaps = 32/558 (5%)
Query: 4 DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
D + + ++ Y K G + EA +F IP +VVSW++++ GY+ + +++ F M
Sbjct: 284 DVFVCTAIVDLYAKCGHMAEAMEVFSRIPNPSVVSWTVMLSGYTKSNDAFSALEIFKEMR 343
Query: 64 LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVK--FGLESDLFEGLKNPYLVS---- 117
SG+ N+ T+ V+ A + A +H + K F L+S + L + Y S
Sbjct: 344 HSGVEINNCTVTSVISACGRPSMVCEASQVHAWVFKSGFYLDSSVAAALISMYSKSGDID 403
Query: 118 -----------------CNAIVAGFINNKLFQQAVLLFNFFRGSGLVPN--AVTMLTVIR 158
N ++ F +K +A+ LF GL + +V L +
Sbjct: 404 LSEQVFEDLDDIQRQNIVNVMITSFSQSKKPGKAIRLFTRMLQEGLRTDEFSVCSLLSVL 463
Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
C+ LG + +HG T+K GL+LD++V +S+ +YS L+ + ++F+ + KD
Sbjct: 464 DCLNLGKQ-----VHGYTLKSGLVLDLTVGSSLFTLYSKCGSLEESYKLFQGIPFKDNAC 518
Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
W M+ F ++ Y +A+ +F EM D L +++V + L RGK++H +
Sbjct: 519 WASMISGFNEYGYLREAIGLFSEMLDDGTSPDESTLAAVLTVCSSHPSLPRGKEIHGYTL 578
Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
G+ + L ++++ MYSKCG L +R V++++ E VS +++ISGY Q+G ++
Sbjct: 579 RAGIDKGMDLGSALVNMYSKCGSLKLARQVYDRLPELDPVSCSSLISGYSQHGLIQDGFL 638
Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
F M ++DS + SIL A+ + Q+H + G SV + L++ Y
Sbjct: 639 LFRDMVMSGF-TMDSFAISSILKAAALSDESSLGAQVHAYITKIGLCTEPSVGSSLLTMY 697
Query: 399 SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458
SK G++D F ++ D+++W +I Y +G AL +Y+ M E G PD T+
Sbjct: 698 SKFGSIDDCCKAFSQING-PDLIAWTALIASYAQHGKANEALQVYNLMKEKGFKPDKVTF 756
Query: 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518
+ +L+AC H GL + N M+++ ++P HY C+VD L R+G L +A +
Sbjct: 757 VGVLSACSHGGLVEESYFHLNSMVKDYGIEPENRHYVCMVDALGRSGRLREAESFINNMH 816
Query: 519 EGMGPNIWRALLSGCVLH 536
+W LL+ C +H
Sbjct: 817 IKPDALVWGTLLAACKIH 834
Score = 184 bits (466), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 152/567 (26%), Positives = 270/567 (47%), Gaps = 40/567 (7%)
Query: 3 IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHM 62
D + + LLS Y SG + +A LFD IP+ +VVS +I+I GY + E+S++ FS M
Sbjct: 82 FDVFLTKSLLSWYSNSGSMADAAKLFDTIPQPDVVSCNIMISGYKQHRLFEESLRFFSKM 141
Query: 63 MLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFG------LESDLFE------GL 110
G N + V+ A + LQ + + +K G +ES L +
Sbjct: 142 HFLGFEANEISYGSVISACSALQAPLFSELVCCHTIKMGYFFYEVVESALIDVFSKNLRF 201
Query: 111 KNPYLV----------SCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160
++ Y V N I+AG + N+ + LF+ P++ T +V+ C
Sbjct: 202 EDAYKVFRDSLSANVYCWNTIIAGALRNQNYGAVFDLFHEMCVGFQKPDSYTYSSVLAAC 261
Query: 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWT 220
+L +++ IK G DV V +++D+Y+ + A+++F + V+SWT
Sbjct: 262 ASLEKLRFGKVVQARVIKCG-AEDVFVCTAIVDLYAKCGHMAEAMEVFSRIPNPSVVSWT 320
Query: 221 RMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280
M+ + A AL+IF+EMR S + + + ++IS + Q+HA V
Sbjct: 321 VMLSGYTKSNDAFSALEIFKEMRHSGVEINNCTVTSVISACGRPSMVCEASQVHAWVFKS 380
Query: 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVF---NQITEKSLVSWTAIISGYVQNGCAREAL 337
G + ++ ++I+MYSK GD+D S VF + I +++V+ +I+ + Q+ +A+
Sbjct: 381 GFYLDSSVAAALISMYSKSGDIDLSEQVFEDLDDIQRQNIVN--VMITSFSQSKKPGKAI 438
Query: 338 NQFIKMRQE--KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLI 395
F +M QE +TD +L+S+L L + Q+HG ++G +V + L
Sbjct: 439 RLFTRMLQEGLRTDEFSVCSLLSVLD------CLNLGKQVHGYTLKSGLVLDLTVGSSLF 492
Query: 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455
+ YSKCG+++ +Y +F+ + F +D W ++I G+ G+ A+ L+ +M + G PD
Sbjct: 493 TLYSKCGSLEESYKLFQGIPF-KDNACWASMISGFNEYGYLREAIGLFSEMLDDGTSPDE 551
Query: 456 STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAG 515
ST ++L C G I + + + +V++ ++ G L A +
Sbjct: 552 STLAAVLTVCSSHPSLPRGKEIHGYTLRAG-IDKGMDLGSALVNMYSKCGSLKLARQVYD 610
Query: 516 KLLEGMGPNIWRALLSGCVLHVGRFQD 542
+L E + P +L+SG H G QD
Sbjct: 611 RLPE-LDPVSCSSLISGYSQH-GLIQD 635
Score = 156 bits (394), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 124/493 (25%), Positives = 228/493 (46%), Gaps = 33/493 (6%)
Query: 3 IDPYNSSKLLSNYFKSGKIKEAENLF---DEIPEKNVVSWSIVIHGYSINGFHEKSMKAF 59
+D ++ L+S Y KSG I +E +F D+I +N+V+ ++I +S + K+++ F
Sbjct: 384 LDSSVAAALISMYSKSGDIDLSEQVFEDLDDIQRQNIVN--VMITSFSQSKKPGKAIRLF 441
Query: 60 SHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDL------------- 106
+ M+ GL + F++ +L L L L + +HG +K GL DL
Sbjct: 442 TRMLQEGLRTDEFSVCSLLSV---LDCLNLGKQVHGYTLKSGLVLDLTVGSSLFTLYSKC 498
Query: 107 ---------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157
F+G+ ++++GF ++A+ LF+ G P+ T+ V+
Sbjct: 499 GSLEESYKLFQGIPFKDNACWASMISGFNEYGYLREAIGLFSEMLDDGTSPDESTLAAVL 558
Query: 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI 217
C + S + IHG T++ G+ + + +++++MYS L A Q++ + D +
Sbjct: 559 TVCSSHPSLPRGKEIHGYTLRAGIDKGMDLGSALVNMYSKCGSLKLARQVYDRLPELDPV 618
Query: 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277
S + ++ + D +FR+M S D+ A+ +++ A+ + G Q+HA +
Sbjct: 619 SCSSLISGYSQHGLIQDGFLLFRDMVMSGFTMDSFAISSILKAAALSDESSLGAQVHAYI 678
Query: 278 VLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337
GL +E + +S++ MYSK G +D F+QI L++WTA+I+ Y Q+G A EAL
Sbjct: 679 TKIGLCTEPSVGSSLLTMYSKFGSIDDCCKAFSQINGPDLIAWTALIASYAQHGKANEAL 738
Query: 338 NQFIKMRQEKTDSVDSITLVSILTASGELAALEIC-LQLHGIAFEAGFPRYRSVQNCLIS 396
Q + +EK D +T V +L+A +E L+ + + G C++
Sbjct: 739 -QVYNLMKEKGFKPDKVTFVGVLSACSHGGLVEESYFHLNSMVKDYGIEPENRHYVCMVD 797
Query: 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS 456
+ + G + A M D + W T++ ++G E K E E D+
Sbjct: 798 ALGRSGRLREAESFINNMHIKPDALVWGTLLAACKIHGEVELGKVAAKKAIEL-EPSDAG 856
Query: 457 TYLSILNACGHAG 469
Y+S+ N G
Sbjct: 857 AYISLSNILAEVG 869
Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 138/278 (49%), Gaps = 16/278 (5%)
Query: 261 NAILGDLKRGKQLHAQVVLGGLQS-ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVS 319
N+ L +L+ K L A ++ L ++ L+ S+++ YS G + + +F+ I + +VS
Sbjct: 58 NSRLCNLRTTKILQAHLLRRYLLPFDVFLTKSLLSWYSNSGSMADAAKLFDTIPQPDVVS 117
Query: 320 WTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIA 379
+ISGY Q+ E+L F KM ++ + I+ S+++A L A +
Sbjct: 118 CNIMISGYKQHRLFEESLRFFSKMHFLGFEA-NEISYGSVISACSALQAPLFSELVCCHT 176
Query: 380 FEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETA 439
+ G+ Y V++ LI +SK + AY VF + +V WNTII G N +
Sbjct: 177 IKMGYFFYEVVESALIDVFSKNLRFEDAYKVFRD-SLSANVYCWNTIIAGALRNQNYGAV 235
Query: 440 LALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEH-YGC-- 496
L+H+M + PDS TY S+L AC A L + F ++++ +K E + C
Sbjct: 236 FDLFHEMCVGFQKPDSYTYSSVLAAC--ASLEK---LRFGKVVQARVIKCGAEDVFVCTA 290
Query: 497 VVDLLARAGCLSDASGLAGKLLEGMGPNI--WRALLSG 532
+VDL A+ G +++A + ++ P++ W +LSG
Sbjct: 291 IVDLYAKCGHMAEAMEVFSRI---PNPSVVSWTVMLSG 325
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%)
Query: 2 CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSH 61
C +P S LL+ Y K G I + F +I ++++W+ +I Y+ +G ++++ ++
Sbjct: 684 CTEPSVGSSLLTMYSKFGSIDDCCKAFSQINGPDLIAWTALIASYAQHGKANEALQVYNL 743
Query: 62 MMLSGLLPNSFTMVGVLVAAA 82
M G P+ T VGVL A +
Sbjct: 744 MKEKGFKPDKVTFVGVLSACS 764
Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/182 (20%), Positives = 69/182 (37%), Gaps = 53/182 (29%)
Query: 1 PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
P +DP + S L+S Y + G I++ LF +
Sbjct: 613 PELDPVSCSSLISGYSQHGLIQDGFLLFRD------------------------------ 642
Query: 61 HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--------------- 105
M++SG +SF + +L AAA L +H + K GL ++
Sbjct: 643 -MVMSGFTMDSFAISSILKAAALSDESSLGAQVHAYITKIGLCTEPSVGSSLLTMYSKFG 701
Query: 106 -------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
F + P L++ A++A + + +A+ ++N + G P+ VT + V+
Sbjct: 702 SIDDCCKAFSQINGPDLIAWTALIASYAQHGKANEALQVYNLMKEKGFKPDKVTFVGVLS 761
Query: 159 GC 160
C
Sbjct: 762 AC 763
>sp|Q9FWA6|PP207_ARATH Pentatricopeptide repeat-containing protein At3g02330
OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2
Length = 903
Score = 232 bits (592), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 167/583 (28%), Positives = 266/583 (45%), Gaps = 45/583 (7%)
Query: 4 DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMM 63
D +S LL Y K + E+ +F IPEKN VSWS +I G N ++K F M
Sbjct: 214 DVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQ 273
Query: 64 LSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD------------------ 105
+ VL + A L L L +H +K +D
Sbjct: 274 KVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQ 333
Query: 106 ----LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161
LF+ +N S NA++ G+ + +A+LLF+ SGL + +++ V R C
Sbjct: 334 DAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACA 393
Query: 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221
+ + I+GL IK L LDV V N+ +DMY L A ++F EM +D +SW
Sbjct: 394 LVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNA 453
Query: 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281
++ + L +F M +SRI D +++ G L G ++H+ +V G
Sbjct: 454 IIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKA-CTGGSLGYGMEIHSSIVKSG 512
Query: 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKS--------------------LVSWT 321
+ S + S+I MYSKCG ++ + + ++ +++ VSW
Sbjct: 513 MASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWN 572
Query: 322 AIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFE 381
+IISGYV + +A F +M E + D T ++L LA+ + Q+H +
Sbjct: 573 SIISGYVMKEQSEDAQMLFTRM-MEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIK 631
Query: 382 AGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALA 441
+ + L+ YSKCG++ + ++FE+ RD V+WN +I GY +G GE A+
Sbjct: 632 KELQSDVYICSTLVDMYSKCGDLHDSRLMFEK-SLRRDFVTWNAMICGYAHHGKGEEAIQ 690
Query: 442 LYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLL 501
L+ +M P+ T++SIL AC H GL + GL F M + + P HY +VD+L
Sbjct: 691 LFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDIL 750
Query: 502 ARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAE 544
++G + A L ++ IWR LL C +H + AE
Sbjct: 751 GKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAE 793
Score = 193 bits (490), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 158/586 (26%), Positives = 270/586 (46%), Gaps = 50/586 (8%)
Query: 1 PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFS 60
P D + +K+++ Y KS + +A + F+ +P ++VVSW+ ++ GY NG KS++ F
Sbjct: 110 PLRDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFV 169
Query: 61 HMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD--------------- 105
M G+ + T +L + L++ L IHG++V+ G ++D
Sbjct: 170 DMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGK 229
Query: 106 -------LFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158
+F+G+ VS +AI+AG + N L A+ F + + +V+R
Sbjct: 230 RFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLR 289
Query: 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218
C AL L +H +K D V + LDMY+ ++ A +F E + S
Sbjct: 290 SCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQS 349
Query: 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278
+ M+ + E+ AL +F + S + D ++L + A++ L G Q++ +
Sbjct: 350 YNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAI 409
Query: 279 LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALN 338
L ++ ++N+ I MY KC L + VF+++ + VSW AII+ + QNG E L
Sbjct: 410 KSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLF 469
Query: 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398
F+ M + + + D T SIL A +L +++H ++G SV LI Y
Sbjct: 470 LFVSMLRSRIEP-DEFTFGSILKACTG-GSLGYGMEIHSSIVKSGMASNSSVGCSLIDMY 527
Query: 399 SKCGNVDLAYIV-------------FEEMGFLRD------VVSWNTIIYGYGVNGHGETA 439
SKCG ++ A + EE+ + + VSWN+II GY + E A
Sbjct: 528 SKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDA 587
Query: 440 LALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGC--V 497
L+ +M E G PD TY ++L+ C + G I Q+I K + + Y C +
Sbjct: 588 QMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVI---KKELQSDVYICSTL 644
Query: 498 VDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDA 543
VD+ ++ G L D+ + K L W A++ G H G+ ++A
Sbjct: 645 VDMYSKCGDLHDSRLMFEKSLR-RDFVTWNAMICGYAHH-GKGEEA 688
Score = 153 bits (387), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 129/541 (23%), Positives = 251/541 (46%), Gaps = 36/541 (6%)
Query: 26 NLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQ 85
+ +++ + ++S V + G E +A +HM++SG P +F + +L +
Sbjct: 38 DFLNQVNSVSTTNFSFVFKECAKQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSR 97
Query: 86 NLELAR------------SIHGLMVKFGLESDLFEG------LKNPYLVSCNAIVAGFIN 127
+ A S + ++ + +D+F+ + +VS N++++G++
Sbjct: 98 DFVSASMVFDKMPLRDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQ 157
Query: 128 NKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSV 187
N +++ +F G+ + T +++ C L +L IHG+ +++G DV
Sbjct: 158 NGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVA 217
Query: 188 NNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRI 247
+++LDMY+ ++++F+ + K+ +SW+ ++ V ALK F+EM+K
Sbjct: 218 ASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNA 277
Query: 248 ICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRS 307
+++ A L +L+ G QLHA + ++ + + + MY+KC ++ ++
Sbjct: 278 GVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQI 337
Query: 308 VFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELA 367
+F+ + S+ A+I+GY Q +AL F ++ D I+L + A +
Sbjct: 338 LFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGL-GFDEISLSGVFRACALVK 396
Query: 368 ALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTII 427
L LQ++G+A ++ V N I Y KC + A+ VF+EM RD VSWN II
Sbjct: 397 GLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMR-RRDAVSWNAII 455
Query: 428 YGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKV 487
+ NG G L L+ M + PD T+ SIL AC G G+ I + +++
Sbjct: 456 AAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACT-GGSLGYGMEIHSSIVKSGMA 514
Query: 488 KPSQEHYGC-VVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCV-----LHVGRFQ 541
S GC ++D+ ++ G + +A + + + RA +SG + +H R Q
Sbjct: 515 --SNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQ-------RANVSGTMEELEKMHNKRLQ 565
Query: 542 D 542
+
Sbjct: 566 E 566
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 200,859,963
Number of Sequences: 539616
Number of extensions: 8105919
Number of successful extensions: 26497
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 74
Number of HSP's that attempted gapping in prelim test: 18499
Number of HSP's gapped (non-prelim): 2453
length of query: 572
length of database: 191,569,459
effective HSP length: 123
effective length of query: 449
effective length of database: 125,196,691
effective search space: 56213314259
effective search space used: 56213314259
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)