Query 046221
Match_columns 572
No_of_seqs 655 out of 2864
Neff 11.8
Searched_HMMs 46136
Date Fri Mar 29 09:53:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046221.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046221hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1.2E-87 2.7E-92 703.8 65.5 567 1-571 117-738 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 3E-76 6.4E-81 618.0 59.9 543 1-563 47-593 (857)
3 PLN03081 pentatricopeptide (PP 100.0 1.5E-70 3.3E-75 561.4 54.2 483 3-571 85-575 (697)
4 PLN03218 maturation of RBCL 1; 100.0 1.1E-69 2.3E-74 556.4 58.6 509 34-560 368-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 4.3E-69 9.4E-74 552.0 54.6 500 3-519 368-908 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 1.7E-65 3.6E-70 524.3 53.7 441 112-555 84-525 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.3E-33 2.8E-38 304.4 59.0 533 5-551 329-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 4.2E-33 9E-38 300.5 59.0 526 8-556 298-869 (899)
9 PRK11447 cellulose synthase su 100.0 1E-24 2.2E-29 235.0 57.1 524 4-552 61-739 (1157)
10 PRK11447 cellulose synthase su 100.0 4.4E-23 9.5E-28 222.4 53.6 498 10-519 117-739 (1157)
11 PRK09782 bacteriophage N4 rece 99.9 2E-21 4.4E-26 200.0 54.5 507 17-555 56-708 (987)
12 PRK09782 bacteriophage N4 rece 99.9 8E-20 1.7E-24 188.3 52.5 524 5-558 78-745 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 3.3E-21 7.1E-26 176.5 33.6 380 151-542 117-508 (966)
14 PRK11788 tetratricopeptide rep 99.9 7.4E-21 1.6E-25 183.4 32.5 304 223-562 42-356 (389)
15 KOG4626 O-linked N-acetylgluco 99.9 2.6E-20 5.5E-25 170.8 30.8 424 119-556 52-488 (966)
16 KOG2002 TPR-containing nuclear 99.9 3.3E-18 7.2E-23 165.2 42.0 529 13-556 207-801 (1018)
17 TIGR00990 3a0801s09 mitochondr 99.9 6.5E-18 1.4E-22 171.4 42.8 421 39-519 130-570 (615)
18 TIGR00990 3a0801s09 mitochondr 99.9 1.7E-17 3.7E-22 168.3 43.4 420 118-554 130-572 (615)
19 PRK11788 tetratricopeptide rep 99.9 2E-19 4.3E-24 173.5 28.1 300 159-492 44-354 (389)
20 PRK15174 Vi polysaccharide exp 99.9 6.4E-18 1.4E-22 170.6 38.0 320 190-519 47-380 (656)
21 PRK10049 pgaA outer membrane p 99.9 6.4E-17 1.4E-21 167.1 45.8 152 120-276 20-175 (765)
22 PRK10049 pgaA outer membrane p 99.8 1.1E-16 2.5E-21 165.3 43.6 408 35-484 14-456 (765)
23 KOG4422 Uncharacterized conser 99.8 3.6E-16 7.9E-21 137.6 39.8 463 36-549 116-621 (625)
24 PRK15174 Vi polysaccharide exp 99.8 4.9E-17 1.1E-21 164.3 39.8 326 117-449 44-381 (656)
25 PRK14574 hmsH outer membrane p 99.8 5.1E-16 1.1E-20 157.2 46.2 425 122-556 41-516 (822)
26 KOG2002 TPR-containing nuclear 99.8 2.9E-16 6.3E-21 152.1 39.6 433 113-556 268-748 (1018)
27 PRK14574 hmsH outer membrane p 99.8 3.6E-15 7.8E-20 151.1 45.3 329 14-381 43-395 (822)
28 KOG4422 Uncharacterized conser 99.8 1E-15 2.2E-20 134.8 34.5 363 26-450 198-591 (625)
29 KOG0495 HAT repeat protein [RN 99.8 4.4E-13 9.6E-18 124.7 45.6 491 50-570 390-895 (913)
30 KOG2003 TPR repeat-containing 99.7 3.6E-15 7.9E-20 132.4 27.4 467 42-536 207-707 (840)
31 KOG2076 RNA polymerase III tra 99.7 1.1E-12 2.3E-17 126.9 43.0 530 16-556 150-772 (895)
32 KOG2076 RNA polymerase III tra 99.7 3.3E-12 7.2E-17 123.6 46.2 498 44-556 147-737 (895)
33 KOG1915 Cell cycle control pro 99.7 3.5E-12 7.7E-17 114.3 39.8 429 83-532 85-549 (677)
34 KOG0495 HAT repeat protein [RN 99.7 2E-11 4.2E-16 114.0 45.8 472 56-560 366-853 (913)
35 KOG2003 TPR repeat-containing 99.7 1.3E-13 2.8E-18 122.7 27.9 466 8-505 204-708 (840)
36 KOG4318 Bicoid mRNA stability 99.7 1.9E-13 4.1E-18 131.4 27.8 496 2-533 22-640 (1088)
37 KOG1915 Cell cycle control pro 99.6 8.2E-11 1.8E-15 105.8 39.6 429 12-462 80-547 (677)
38 KOG4318 Bicoid mRNA stability 99.6 1.6E-12 3.4E-17 125.3 29.8 242 34-301 23-286 (1088)
39 KOG0547 Translocase of outer m 99.6 1.1E-11 2.3E-16 111.8 31.8 403 118-551 118-564 (606)
40 PF13429 TPR_15: Tetratricopep 99.6 2.2E-14 4.7E-19 130.8 13.0 256 223-518 15-275 (280)
41 PF13429 TPR_15: Tetratricopep 99.6 1.6E-14 3.5E-19 131.7 12.1 251 292-552 14-276 (280)
42 PRK10747 putative protoheme IX 99.6 1.3E-11 2.8E-16 117.8 32.4 284 229-551 97-388 (398)
43 KOG1155 Anaphase-promoting com 99.6 9.5E-11 2.1E-15 105.1 35.0 286 226-516 237-532 (559)
44 KOG2047 mRNA splicing factor [ 99.6 5.4E-10 1.2E-14 104.4 40.6 516 5-542 102-712 (835)
45 PRK10747 putative protoheme IX 99.6 3.3E-12 7.1E-17 121.9 27.0 277 49-344 97-388 (398)
46 COG2956 Predicted N-acetylgluc 99.6 1.3E-11 2.8E-16 105.5 27.0 300 228-567 47-361 (389)
47 KOG1155 Anaphase-promoting com 99.6 3.4E-11 7.4E-16 107.9 30.3 354 182-550 161-533 (559)
48 TIGR00540 hemY_coli hemY prote 99.6 1.3E-11 2.9E-16 118.4 30.3 291 227-551 95-397 (409)
49 KOG1126 DNA-binding cell divis 99.5 1.3E-12 2.8E-17 122.4 22.0 279 266-556 334-623 (638)
50 KOG3785 Uncharacterized conser 99.5 4.9E-11 1.1E-15 103.2 29.4 449 44-527 30-498 (557)
51 TIGR00540 hemY_coli hemY prote 99.5 1.6E-11 3.6E-16 117.8 28.7 285 195-518 94-397 (409)
52 KOG0547 Translocase of outer m 99.5 1.1E-10 2.3E-15 105.6 29.1 213 298-519 338-565 (606)
53 KOG1126 DNA-binding cell divis 99.5 1E-11 2.2E-16 116.5 22.0 279 230-519 333-619 (638)
54 COG3071 HemY Uncharacterized e 99.5 2.4E-10 5.2E-15 101.0 28.7 286 229-551 97-388 (400)
55 KOG1173 Anaphase-promoting com 99.4 4.3E-10 9.4E-15 103.6 29.6 273 255-534 248-533 (611)
56 KOG2047 mRNA splicing factor [ 99.4 5.8E-08 1.2E-12 91.3 43.2 493 36-552 102-686 (835)
57 COG3071 HemY Uncharacterized e 99.4 9.3E-10 2E-14 97.3 28.4 284 128-482 97-388 (400)
58 KOG3785 Uncharacterized conser 99.4 1.6E-08 3.5E-13 88.0 35.0 445 12-495 29-498 (557)
59 KOG1173 Anaphase-promoting com 99.4 2.3E-09 5.1E-14 98.9 31.3 477 8-502 19-533 (611)
60 PF13041 PPR_2: PPR repeat fam 99.4 1.7E-12 3.8E-17 82.3 5.9 50 113-162 1-50 (50)
61 KOG2376 Signal recognition par 99.3 2.5E-08 5.4E-13 92.8 34.4 211 122-344 19-251 (652)
62 TIGR02521 type_IV_pilW type IV 99.3 6.7E-10 1.4E-14 99.0 24.0 162 388-552 65-231 (234)
63 COG2956 Predicted N-acetylgluc 99.3 3.3E-09 7.1E-14 91.1 25.9 211 198-414 48-275 (389)
64 KOG1156 N-terminal acetyltrans 99.3 9.1E-08 2E-12 90.2 36.9 459 36-550 8-508 (700)
65 KOG2376 Signal recognition par 99.3 8E-08 1.7E-12 89.5 36.1 148 369-519 357-519 (652)
66 KOG1156 N-terminal acetyltrans 99.3 1.3E-07 2.8E-12 89.2 37.7 458 19-517 21-508 (700)
67 PF13041 PPR_2: PPR repeat fam 99.3 5.9E-12 1.3E-16 79.8 6.7 50 418-467 1-50 (50)
68 KOG1174 Anaphase-promoting com 99.3 5.3E-08 1.2E-12 86.6 33.0 286 228-522 208-503 (564)
69 KOG4162 Predicted calmodulin-b 99.3 4.8E-08 1E-12 93.9 35.2 481 47-566 238-795 (799)
70 TIGR02521 type_IV_pilW type IV 99.3 1.9E-09 4.1E-14 96.0 23.5 193 319-518 33-230 (234)
71 PRK12370 invasion protein regu 99.3 2E-09 4.4E-14 107.6 24.7 241 302-555 277-537 (553)
72 KOG1129 TPR repeat-containing 99.3 5.5E-10 1.2E-14 95.8 16.9 228 290-557 227-462 (478)
73 KOG4162 Predicted calmodulin-b 99.2 7.2E-08 1.6E-12 92.7 31.2 435 62-519 314-782 (799)
74 PRK12370 invasion protein regu 99.2 2.9E-09 6.2E-14 106.5 23.3 261 34-315 254-535 (553)
75 KOG1129 TPR repeat-containing 99.2 2E-09 4.4E-14 92.4 17.7 192 321-555 227-426 (478)
76 PF12569 NARP1: NMDA receptor- 99.2 2.1E-07 4.6E-12 89.9 33.8 298 11-344 10-332 (517)
77 KOG1840 Kinesin light chain [C 99.2 9.5E-09 2.1E-13 97.8 23.1 128 391-518 328-477 (508)
78 KOG1174 Anaphase-promoting com 99.2 2.8E-07 6.1E-12 82.1 30.4 303 246-556 189-503 (564)
79 KOG1840 Kinesin light chain [C 99.2 3.5E-09 7.5E-14 100.7 19.2 191 361-552 249-478 (508)
80 KOG3616 Selective LIM binding 99.1 9E-07 1.9E-11 84.8 33.2 285 190-517 620-908 (1636)
81 PF12569 NARP1: NMDA receptor- 99.1 2.6E-07 5.6E-12 89.4 29.8 285 122-414 11-331 (517)
82 KOG3616 Selective LIM binding 99.1 1.1E-06 2.3E-11 84.3 32.3 49 494-549 1082-1130(1636)
83 KOG4340 Uncharacterized conser 99.1 2.4E-07 5.3E-12 78.9 24.7 195 39-282 13-209 (459)
84 PF04733 Coatomer_E: Coatomer 99.1 1.5E-08 3.2E-13 91.1 18.0 222 290-522 39-268 (290)
85 PRK11189 lipoprotein NlpI; Pro 99.1 1.7E-07 3.7E-12 85.7 24.9 221 299-527 39-274 (296)
86 KOG1127 TPR repeat-containing 99.0 3.2E-07 6.9E-12 90.8 27.1 160 7-179 494-659 (1238)
87 COG3063 PilF Tfp pilus assembl 99.0 1.5E-07 3.3E-12 77.3 20.7 200 320-526 38-243 (250)
88 COG3063 PilF Tfp pilus assembl 99.0 4.1E-07 9E-12 74.8 21.2 193 355-551 37-234 (250)
89 KOG3617 WD40 and TPR repeat-co 99.0 3.5E-05 7.6E-10 75.3 37.3 230 14-278 737-994 (1416)
90 KOG0985 Vesicle coat protein c 99.0 2.2E-05 4.7E-10 78.4 35.9 331 36-418 1104-1445(1666)
91 KOG0548 Molecular co-chaperone 99.0 7.3E-06 1.6E-10 76.1 30.8 212 256-482 229-453 (539)
92 KOG3617 WD40 and TPR repeat-co 98.9 2.1E-05 4.5E-10 76.8 34.3 269 34-344 724-994 (1416)
93 PF04733 Coatomer_E: Coatomer 98.9 1.6E-07 3.5E-12 84.4 19.1 247 294-555 9-267 (290)
94 PRK11189 lipoprotein NlpI; Pro 98.9 2.3E-07 5E-12 84.8 20.5 94 39-143 67-160 (296)
95 KOG1127 TPR repeat-containing 98.9 1E-05 2.2E-10 80.5 32.3 395 4-414 525-993 (1238)
96 KOG0985 Vesicle coat protein c 98.9 0.00013 2.8E-09 73.1 41.9 270 122-433 1055-1326(1666)
97 KOG0548 Molecular co-chaperone 98.9 1.1E-05 2.4E-10 75.0 28.6 418 79-535 10-471 (539)
98 KOG4340 Uncharacterized conser 98.9 5.8E-06 1.2E-10 70.7 24.7 300 8-377 13-334 (459)
99 cd05804 StaR_like StaR_like; a 98.8 1.7E-05 3.7E-10 75.6 29.4 192 38-244 8-214 (355)
100 cd05804 StaR_like StaR_like; a 98.8 3E-05 6.5E-10 73.9 30.3 194 217-448 7-214 (355)
101 KOG1125 TPR repeat-containing 98.7 1.2E-06 2.6E-11 81.9 17.9 242 295-546 294-564 (579)
102 PRK04841 transcriptional regul 98.7 7.5E-05 1.6E-09 81.0 34.4 326 226-554 384-761 (903)
103 KOG1128 Uncharacterized conser 98.7 8.7E-06 1.9E-10 78.4 23.1 231 283-532 395-632 (777)
104 KOG0624 dsRNA-activated protei 98.7 4.7E-05 1E-09 66.7 24.4 306 190-522 43-373 (504)
105 PF12854 PPR_1: PPR repeat 98.7 3.9E-08 8.4E-13 55.6 3.9 32 180-211 2-33 (34)
106 KOG1125 TPR repeat-containing 98.7 5E-06 1.1E-10 77.9 19.7 248 261-513 295-564 (579)
107 TIGR03302 OM_YfiO outer membra 98.7 2.4E-06 5.2E-11 75.9 17.4 160 389-554 34-233 (235)
108 PRK04841 transcriptional regul 98.6 5.3E-05 1.1E-09 82.1 30.7 265 12-279 348-640 (903)
109 PF12854 PPR_1: PPR repeat 98.6 5.5E-08 1.2E-12 55.0 4.0 32 450-481 2-33 (34)
110 KOG3081 Vesicle coat complex C 98.6 2.3E-05 5.1E-10 66.2 20.5 160 350-518 105-269 (299)
111 KOG0624 dsRNA-activated protei 98.6 0.00045 9.8E-09 60.8 29.1 307 149-483 37-369 (504)
112 KOG1070 rRNA processing protei 98.6 1.4E-05 3E-10 82.5 21.4 196 318-519 1459-1662(1710)
113 PRK15179 Vi polysaccharide bio 98.5 1.1E-05 2.4E-10 81.5 20.0 145 383-531 81-230 (694)
114 PRK15179 Vi polysaccharide bio 98.5 2.4E-05 5.3E-10 79.0 21.8 134 415-553 81-217 (694)
115 PRK15359 type III secretion sy 98.5 3.6E-06 7.9E-11 67.4 12.8 101 423-527 27-129 (144)
116 COG5010 TadD Flp pilus assembl 98.5 4.3E-05 9.4E-10 64.7 19.3 130 386-519 98-230 (257)
117 TIGR03302 OM_YfiO outer membra 98.5 1.1E-05 2.3E-10 71.7 17.2 186 316-519 32-231 (235)
118 PRK10370 formate-dependent nit 98.5 2.3E-05 4.9E-10 66.6 17.7 115 401-519 52-172 (198)
119 KOG1128 Uncharacterized conser 98.4 2E-05 4.3E-10 76.1 18.1 229 255-502 402-634 (777)
120 KOG1914 mRNA cleavage and poly 98.4 0.0016 3.5E-08 61.2 34.3 412 113-552 18-500 (656)
121 PRK15359 type III secretion sy 98.4 5.1E-06 1.1E-10 66.6 12.1 110 440-556 13-124 (144)
122 KOG1070 rRNA processing protei 98.4 9.2E-05 2E-09 76.7 23.1 223 253-477 1460-1693(1710)
123 KOG3081 Vesicle coat complex C 98.4 0.00037 8.1E-09 59.2 22.9 246 295-554 17-272 (299)
124 COG5010 TadD Flp pilus assembl 98.4 3.3E-05 7.2E-10 65.4 16.3 154 392-549 70-227 (257)
125 PRK10370 formate-dependent nit 98.4 1.4E-05 3.1E-10 67.8 14.3 150 395-558 23-178 (198)
126 COG4783 Putative Zn-dependent 98.4 8.5E-05 1.8E-09 68.6 19.7 138 397-554 315-455 (484)
127 KOG1914 mRNA cleavage and poly 98.4 0.0024 5.2E-08 60.1 37.6 148 333-483 347-500 (656)
128 PLN02789 farnesyltranstransfer 98.4 0.00011 2.4E-09 67.2 20.5 174 11-197 43-229 (320)
129 PF07079 DUF1347: Protein of u 98.3 0.0023 4.9E-08 58.9 34.5 128 397-529 388-531 (549)
130 PLN02789 farnesyltranstransfer 98.3 0.00069 1.5E-08 62.1 24.7 180 368-551 87-300 (320)
131 PRK14720 transcript cleavage f 98.3 0.00024 5.2E-09 72.9 23.3 173 226-431 93-268 (906)
132 TIGR00756 PPR pentatricopeptid 98.2 2.3E-06 5E-11 49.4 4.4 35 37-71 1-35 (35)
133 TIGR00756 PPR pentatricopeptid 98.2 2.4E-06 5.3E-11 49.3 4.3 34 117-150 2-35 (35)
134 KOG2053 Mitochondrial inherita 98.2 0.0084 1.8E-07 60.1 44.4 510 16-551 20-606 (932)
135 KOG3060 Uncharacterized conser 98.2 0.0013 2.8E-08 55.6 20.9 125 321-448 56-182 (289)
136 TIGR02552 LcrH_SycD type III s 98.2 5.3E-05 1.1E-09 60.5 13.0 104 421-527 18-122 (135)
137 PRK14720 transcript cleavage f 98.2 0.00063 1.4E-08 69.9 23.0 234 215-502 30-268 (906)
138 PF13812 PPR_3: Pentatricopept 98.2 3.3E-06 7.3E-11 48.3 4.2 33 37-69 2-34 (34)
139 TIGR02552 LcrH_SycD type III s 98.2 4.8E-05 1.1E-09 60.7 12.2 111 441-556 4-117 (135)
140 COG4783 Putative Zn-dependent 98.2 0.0011 2.3E-08 61.7 21.8 145 362-527 315-463 (484)
141 PF13812 PPR_3: Pentatricopept 98.2 3.6E-06 7.8E-11 48.1 4.1 33 116-148 2-34 (34)
142 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 8.3E-05 1.8E-09 69.4 14.7 122 392-519 173-296 (395)
143 KOG2053 Mitochondrial inherita 98.1 0.014 3.1E-07 58.5 42.9 441 47-519 20-535 (932)
144 PF09976 TPR_21: Tetratricopep 98.1 0.00013 2.9E-09 58.8 13.6 88 426-516 54-143 (145)
145 PF09976 TPR_21: Tetratricopep 98.0 0.00031 6.7E-09 56.6 14.7 125 422-550 14-144 (145)
146 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 4.9E-05 1.1E-09 70.9 11.3 124 9-143 173-296 (395)
147 PF04840 Vps16_C: Vps16, C-ter 98.0 0.013 2.7E-07 53.8 28.8 122 391-533 180-301 (319)
148 PF12895 Apc3: Anaphase-promot 98.0 2.8E-05 6.1E-10 55.8 6.9 48 469-516 3-50 (84)
149 KOG0553 TPR repeat-containing 98.0 8.8E-05 1.9E-09 64.2 10.4 93 398-495 91-186 (304)
150 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00036 7.8E-09 54.1 12.3 96 422-519 4-104 (119)
151 PF08579 RPM2: Mitochondrial r 97.9 0.0002 4.3E-09 52.1 9.1 79 119-197 29-116 (120)
152 PF05843 Suf: Suppressor of fo 97.8 0.00083 1.8E-08 60.8 15.1 127 422-552 3-135 (280)
153 PRK15363 pathogenicity island 97.8 0.00076 1.6E-08 53.3 12.8 95 393-489 40-137 (157)
154 PF01535 PPR: PPR repeat; Int 97.8 2.6E-05 5.5E-10 43.4 3.5 31 37-67 1-31 (31)
155 KOG3060 Uncharacterized conser 97.8 0.002 4.4E-08 54.5 15.7 190 364-556 23-223 (289)
156 PF01535 PPR: PPR repeat; Int 97.8 3E-05 6.4E-10 43.1 3.6 30 117-146 2-31 (31)
157 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00043 9.4E-09 53.7 11.5 100 456-556 3-108 (119)
158 PF12895 Apc3: Anaphase-promot 97.8 4.8E-05 1E-09 54.5 5.5 81 433-516 2-83 (84)
159 cd00189 TPR Tetratricopeptide 97.8 0.0003 6.5E-09 51.9 10.1 92 423-518 3-95 (100)
160 cd00189 TPR Tetratricopeptide 97.8 0.00034 7.5E-09 51.6 10.2 91 459-552 4-96 (100)
161 PF14938 SNAP: Soluble NSF att 97.8 0.0038 8.3E-08 56.8 18.4 136 393-529 119-274 (282)
162 PLN03088 SGT1, suppressor of 97.8 0.00051 1.1E-08 64.6 13.0 103 427-533 9-113 (356)
163 PF10037 MRP-S27: Mitochondria 97.8 0.0007 1.5E-08 63.7 13.6 122 347-468 60-186 (429)
164 PF10037 MRP-S27: Mitochondria 97.7 0.00029 6.3E-09 66.2 10.9 127 65-198 60-186 (429)
165 COG4700 Uncharacterized protei 97.7 0.0038 8.2E-08 50.1 15.2 123 385-512 86-214 (251)
166 PF14559 TPR_19: Tetratricopep 97.7 0.00017 3.8E-09 49.2 7.1 62 467-530 3-65 (68)
167 PF06239 ECSIT: Evolutionarily 97.7 0.00043 9.3E-09 57.3 9.7 127 22-177 31-166 (228)
168 KOG1538 Uncharacterized conser 97.7 0.025 5.5E-07 54.6 22.3 253 218-518 558-844 (1081)
169 COG3898 Uncharacterized membra 97.6 0.046 1E-06 49.6 26.4 285 230-527 98-399 (531)
170 PRK02603 photosystem I assembl 97.6 0.0019 4.2E-08 53.8 13.3 83 422-506 37-121 (172)
171 PF08579 RPM2: Mitochondrial r 97.6 0.00078 1.7E-08 49.2 8.8 79 220-298 29-116 (120)
172 PF05843 Suf: Suppressor of fo 97.6 0.001 2.2E-08 60.2 12.0 126 355-482 3-134 (280)
173 CHL00033 ycf3 photosystem I as 97.6 0.0017 3.6E-08 54.0 12.4 95 420-516 35-138 (168)
174 PRK15363 pathogenicity island 97.5 0.0032 6.9E-08 49.8 12.3 95 421-519 36-131 (157)
175 KOG1538 Uncharacterized conser 97.5 0.023 5E-07 54.9 20.0 260 8-344 559-844 (1081)
176 PF06239 ECSIT: Evolutionarily 97.5 0.0028 6.1E-08 52.6 12.1 87 418-505 45-152 (228)
177 KOG0550 Molecular chaperone (D 97.5 0.042 9.2E-07 50.3 20.1 330 193-550 57-420 (486)
178 PRK10153 DNA-binding transcrip 97.5 0.0019 4.2E-08 63.5 13.2 143 383-528 332-491 (517)
179 PF12688 TPR_5: Tetratrico pep 97.5 0.0049 1.1E-07 47.0 12.2 93 426-518 7-102 (120)
180 KOG0553 TPR repeat-containing 97.4 0.0022 4.7E-08 55.9 11.0 99 362-463 90-190 (304)
181 PRK10153 DNA-binding transcrip 97.4 0.0083 1.8E-07 59.2 16.6 74 416-494 416-489 (517)
182 PRK02603 photosystem I assembl 97.4 0.0036 7.8E-08 52.2 12.1 99 456-555 36-151 (172)
183 PF14938 SNAP: Soluble NSF att 97.4 0.0038 8.3E-08 56.8 13.1 23 459-481 159-181 (282)
184 PLN03088 SGT1, suppressor of 97.4 0.0022 4.7E-08 60.4 11.7 91 462-555 9-101 (356)
185 PF13414 TPR_11: TPR repeat; P 97.4 0.00067 1.5E-08 46.4 6.0 61 420-482 3-65 (69)
186 PF12688 TPR_5: Tetratrico pep 97.3 0.004 8.6E-08 47.5 10.4 91 460-551 6-102 (120)
187 PF13432 TPR_16: Tetratricopep 97.3 0.00056 1.2E-08 46.1 5.2 54 428-483 5-59 (65)
188 COG4235 Cytochrome c biogenesi 97.3 0.0049 1.1E-07 54.1 12.0 103 454-559 155-262 (287)
189 CHL00033 ycf3 photosystem I as 97.3 0.0047 1E-07 51.3 11.6 113 436-549 15-138 (168)
190 COG4700 Uncharacterized protei 97.3 0.031 6.6E-07 45.1 14.7 110 415-524 84-194 (251)
191 PF04840 Vps16_C: Vps16, C-ter 97.2 0.18 3.8E-06 46.4 29.8 110 218-343 179-288 (319)
192 PF13414 TPR_11: TPR repeat; P 97.2 0.0024 5.1E-08 43.6 7.2 64 454-519 2-66 (69)
193 PRK10803 tol-pal system protei 97.2 0.0053 1.1E-07 54.5 11.0 100 422-523 145-250 (263)
194 PF13432 TPR_16: Tetratricopep 97.1 0.0024 5.2E-08 42.9 6.9 60 461-522 3-63 (65)
195 COG5107 RNA14 Pre-mRNA 3'-end 97.1 0.22 4.7E-06 46.4 29.3 128 421-552 398-530 (660)
196 PF14559 TPR_19: Tetratricopep 97.1 0.0025 5.4E-08 43.4 6.7 61 431-496 2-63 (68)
197 PRK10866 outer membrane biogen 97.0 0.056 1.2E-06 47.7 16.1 24 222-245 181-204 (243)
198 KOG1130 Predicted G-alpha GTPa 97.0 0.015 3.3E-07 53.0 11.8 130 390-519 197-343 (639)
199 PRK10866 outer membrane biogen 97.0 0.13 2.7E-06 45.5 17.7 54 497-551 181-239 (243)
200 PF13525 YfiO: Outer membrane 96.9 0.014 2.9E-07 50.2 11.3 65 1-65 1-71 (203)
201 KOG2041 WD40 repeat protein [G 96.9 0.36 7.8E-06 47.6 21.3 30 3-32 690-719 (1189)
202 PRK10803 tol-pal system protei 96.9 0.012 2.5E-07 52.4 11.0 97 456-556 144-249 (263)
203 PF13371 TPR_9: Tetratricopept 96.9 0.0043 9.2E-08 42.9 6.7 54 428-483 3-57 (73)
204 KOG2796 Uncharacterized conser 96.9 0.18 4E-06 43.3 17.0 136 319-457 179-321 (366)
205 COG4235 Cytochrome c biogenesi 96.9 0.025 5.4E-07 49.8 12.1 97 419-519 155-255 (287)
206 PF13281 DUF4071: Domain of un 96.9 0.17 3.7E-06 47.0 18.1 75 356-430 144-227 (374)
207 PF13371 TPR_9: Tetratricopept 96.8 0.0055 1.2E-07 42.3 6.3 63 463-527 3-66 (73)
208 PF12921 ATP13: Mitochondrial 96.8 0.024 5.3E-07 43.7 10.1 98 388-503 2-100 (126)
209 KOG2280 Vacuolar assembly/sort 96.8 0.71 1.5E-05 46.1 24.4 109 289-413 687-795 (829)
210 PF13424 TPR_12: Tetratricopep 96.7 0.0034 7.3E-08 44.1 4.8 62 456-517 6-72 (78)
211 KOG2280 Vacuolar assembly/sort 96.7 0.81 1.8E-05 45.8 34.5 341 144-518 426-797 (829)
212 KOG2796 Uncharacterized conser 96.5 0.081 1.7E-06 45.4 12.3 140 390-531 179-327 (366)
213 KOG1130 Predicted G-alpha GTPa 96.5 0.023 4.9E-07 51.9 9.6 129 355-483 197-343 (639)
214 KOG0543 FKBP-type peptidyl-pro 96.5 0.035 7.5E-07 50.9 10.9 96 456-553 258-355 (397)
215 PF07079 DUF1347: Protein of u 96.5 0.8 1.7E-05 43.0 27.8 80 411-498 447-532 (549)
216 PF12921 ATP13: Mitochondrial 96.5 0.055 1.2E-06 41.7 10.2 96 352-465 1-98 (126)
217 PF03704 BTAD: Bacterial trans 96.4 0.036 7.8E-07 44.7 9.5 70 423-494 65-139 (146)
218 KOG2114 Vacuolar assembly/sort 96.4 1.4 3E-05 44.8 26.9 177 10-213 339-518 (933)
219 PF13281 DUF4071: Domain of un 96.3 0.88 1.9E-05 42.5 18.8 30 454-483 304-333 (374)
220 KOG0550 Molecular chaperone (D 96.3 0.98 2.1E-05 41.9 21.7 151 260-414 178-347 (486)
221 COG5107 RNA14 Pre-mRNA 3'-end 96.2 1.2 2.5E-05 41.9 32.9 143 388-535 397-547 (660)
222 PF13424 TPR_12: Tetratricopep 96.1 0.014 2.9E-07 41.0 5.1 63 421-483 6-74 (78)
223 PRK15331 chaperone protein Sic 96.1 0.14 3E-06 41.1 10.9 84 398-482 47-132 (165)
224 PF10300 DUF3808: Protein of u 96.1 0.26 5.6E-06 48.4 15.2 115 434-550 247-373 (468)
225 KOG2041 WD40 repeat protein [G 96.0 1.8 3.9E-05 43.0 28.0 29 113-141 690-718 (1189)
226 PF03704 BTAD: Bacterial trans 95.9 0.036 7.9E-07 44.7 7.4 61 457-519 64-124 (146)
227 PF08631 SPO22: Meiosis protei 95.9 1.4 3E-05 40.1 24.3 99 390-491 86-192 (278)
228 PRK15331 chaperone protein Sic 95.9 0.2 4.3E-06 40.2 10.7 95 429-527 46-141 (165)
229 COG1729 Uncharacterized protei 95.8 0.12 2.5E-06 45.1 10.2 95 422-519 144-243 (262)
230 PF04053 Coatomer_WDAD: Coatom 95.8 0.37 8E-06 46.6 14.7 157 123-311 269-427 (443)
231 KOG3941 Intermediate in Toll s 95.8 0.16 3.4E-06 44.2 10.6 126 23-177 52-186 (406)
232 PLN03098 LPA1 LOW PSII ACCUMUL 95.7 0.061 1.3E-06 50.6 8.7 61 388-448 75-140 (453)
233 KOG3941 Intermediate in Toll s 95.7 0.13 2.9E-06 44.6 9.9 96 410-506 56-173 (406)
234 KOG2610 Uncharacterized conser 95.7 1.2 2.5E-05 40.1 15.6 156 400-560 115-283 (491)
235 PLN03098 LPA1 LOW PSII ACCUMUL 95.7 0.14 2.9E-06 48.4 10.6 63 419-483 74-140 (453)
236 KOG0543 FKBP-type peptidyl-pro 95.6 0.18 3.9E-06 46.5 10.8 120 396-519 216-354 (397)
237 KOG1920 IkappaB kinase complex 95.5 4.2 9.1E-05 43.4 24.2 47 393-444 1004-1050(1265)
238 PF13512 TPR_18: Tetratricopep 95.5 0.13 2.7E-06 40.2 8.4 82 1-82 6-93 (142)
239 PF04053 Coatomer_WDAD: Coatom 95.5 0.61 1.3E-05 45.2 14.8 161 325-518 269-429 (443)
240 KOG1585 Protein required for f 95.5 1.4 3.1E-05 37.7 14.7 86 392-478 154-250 (308)
241 PF10300 DUF3808: Protein of u 95.4 0.58 1.2E-05 46.1 14.7 117 401-519 246-375 (468)
242 PF13525 YfiO: Outer membrane 95.4 1.5 3.3E-05 37.6 21.2 51 461-511 147-198 (203)
243 KOG1941 Acetylcholine receptor 95.4 2.1 4.6E-05 39.0 16.6 164 319-482 85-273 (518)
244 PF13170 DUF4003: Protein of u 95.3 1.5 3.2E-05 40.0 15.7 63 131-193 78-149 (297)
245 PF04184 ST7: ST7 protein; In 95.1 2.3 5E-05 40.8 16.6 76 457-532 261-340 (539)
246 PF13170 DUF4003: Protein of u 95.1 0.66 1.4E-05 42.2 12.9 135 52-194 78-226 (297)
247 PF08631 SPO22: Meiosis protei 95.1 2.6 5.6E-05 38.3 24.2 100 355-455 86-192 (278)
248 smart00299 CLH Clathrin heavy 94.9 1.5 3.3E-05 34.9 13.8 25 151-175 70-94 (140)
249 KOG4555 TPR repeat-containing 94.8 0.4 8.7E-06 36.4 8.8 96 428-525 51-149 (175)
250 PRK11906 transcriptional regul 94.8 3.4 7.3E-05 39.5 16.9 114 403-519 319-435 (458)
251 KOG4555 TPR repeat-containing 94.6 0.93 2E-05 34.5 10.3 87 396-482 51-142 (175)
252 PF13428 TPR_14: Tetratricopep 94.6 0.081 1.8E-06 31.9 4.2 27 458-484 4-30 (44)
253 KOG2114 Vacuolar assembly/sort 94.5 6.7 0.00015 40.2 25.4 180 73-277 336-516 (933)
254 PF13512 TPR_18: Tetratricopep 94.4 1.8 4E-05 33.9 12.1 53 432-485 22-77 (142)
255 COG0457 NrfG FOG: TPR repeat [ 94.4 3.2 6.9E-05 36.4 24.1 156 392-552 99-264 (291)
256 PF13428 TPR_14: Tetratricopep 94.4 0.13 2.8E-06 31.0 4.7 26 423-448 4-29 (44)
257 COG3898 Uncharacterized membra 94.2 4.7 0.0001 37.4 28.2 283 262-553 95-392 (531)
258 KOG1258 mRNA processing protei 94.1 6.6 0.00014 38.7 32.7 128 115-245 45-180 (577)
259 COG1729 Uncharacterized protei 94.0 0.85 1.9E-05 39.9 10.5 98 74-179 145-244 (262)
260 PRK11906 transcriptional regul 93.8 1.6 3.5E-05 41.6 12.7 142 403-550 273-433 (458)
261 PF04184 ST7: ST7 protein; In 93.7 3.4 7.5E-05 39.7 14.4 73 389-462 260-338 (539)
262 KOG2610 Uncharacterized conser 93.5 2.1 4.5E-05 38.6 12.0 149 127-276 115-272 (491)
263 PF09205 DUF1955: Domain of un 93.4 2.8 6E-05 32.2 13.2 57 460-518 91-147 (161)
264 COG4105 ComL DNA uptake lipopr 93.1 5.6 0.00012 34.7 16.6 53 222-275 173-228 (254)
265 smart00299 CLH Clathrin heavy 92.7 4.2 9E-05 32.3 14.8 84 256-343 12-95 (140)
266 KOG1258 mRNA processing protei 92.6 12 0.00025 37.1 30.9 176 287-467 298-487 (577)
267 PF07035 Mic1: Colon cancer-as 92.6 5 0.00011 32.8 13.6 134 135-280 14-149 (167)
268 PF10602 RPN7: 26S proteasome 92.5 1.8 4E-05 36.0 10.1 97 421-519 37-141 (177)
269 KOG1941 Acetylcholine receptor 92.5 1.5 3.3E-05 39.9 9.9 225 327-552 16-274 (518)
270 KOG1586 Protein required for f 92.5 5.2 0.00011 34.3 12.3 14 435-448 88-101 (288)
271 KOG1464 COP9 signalosome, subu 92.5 6.9 0.00015 34.2 18.0 47 266-312 42-91 (440)
272 COG3629 DnrI DNA-binding trans 92.5 1.6 3.5E-05 38.9 10.1 76 423-500 156-236 (280)
273 COG3118 Thioredoxin domain-con 92.4 7.8 0.00017 34.6 18.2 139 363-505 144-286 (304)
274 COG4785 NlpI Lipoprotein NlpI, 92.4 5.8 0.00013 33.5 12.3 179 363-555 75-268 (297)
275 COG3118 Thioredoxin domain-con 92.3 7.9 0.00017 34.6 15.9 138 396-536 142-285 (304)
276 KOG4570 Uncharacterized conser 92.3 2.4 5.2E-05 37.9 10.6 100 382-485 58-165 (418)
277 COG3629 DnrI DNA-binding trans 92.2 1.6 3.5E-05 38.9 9.8 76 389-464 154-236 (280)
278 KOG1585 Protein required for f 92.2 7 0.00015 33.8 16.3 142 391-547 94-250 (308)
279 PF13176 TPR_7: Tetratricopept 92.2 0.3 6.5E-06 27.8 3.6 24 458-481 2-25 (36)
280 PF09613 HrpB1_HrpK: Bacterial 92.2 1.8 3.8E-05 34.8 8.9 78 421-503 8-89 (160)
281 TIGR02561 HrpB1_HrpK type III 92.1 4.2 9E-05 32.1 10.6 51 431-483 21-72 (153)
282 COG4649 Uncharacterized protei 92.1 5.5 0.00012 32.3 13.6 91 396-486 102-198 (221)
283 PF09205 DUF1955: Domain of un 92.0 4.5 9.8E-05 31.1 12.0 137 125-282 12-151 (161)
284 PF13431 TPR_17: Tetratricopep 91.9 0.21 4.6E-06 28.0 2.7 23 489-511 11-33 (34)
285 PF10602 RPN7: 26S proteasome 91.9 3.1 6.8E-05 34.6 10.7 107 443-550 23-139 (177)
286 PF09613 HrpB1_HrpK: Bacterial 91.9 5.7 0.00012 32.0 11.5 111 396-513 18-131 (160)
287 PRK09687 putative lyase; Provi 91.6 10 0.00022 34.4 23.8 241 26-297 27-278 (280)
288 COG4105 ComL DNA uptake lipopr 91.5 8.9 0.00019 33.5 19.1 53 497-550 173-230 (254)
289 KOG0276 Vesicle coat complex C 91.5 2.6 5.7E-05 41.3 10.7 152 15-211 596-747 (794)
290 PF13176 TPR_7: Tetratricopept 91.4 0.49 1.1E-05 26.9 4.0 27 422-448 1-27 (36)
291 PF00637 Clathrin: Region in C 91.1 0.46 9.9E-06 38.1 5.0 86 120-212 12-97 (143)
292 KOG4234 TPR repeat-containing 90.9 1.7 3.7E-05 36.0 7.8 20 500-519 177-196 (271)
293 PF00515 TPR_1: Tetratricopept 90.7 0.63 1.4E-05 25.9 4.0 25 458-482 4-28 (34)
294 PF10345 Cohesin_load: Cohesin 90.6 23 0.0005 36.6 33.3 166 113-279 57-253 (608)
295 KOG1920 IkappaB kinase complex 90.1 32 0.00068 37.3 24.7 111 391-519 942-1054(1265)
296 COG1747 Uncharacterized N-term 90.0 20 0.00043 34.9 20.6 160 352-519 65-233 (711)
297 TIGR02561 HrpB1_HrpK type III 89.9 4.7 0.0001 31.8 9.1 50 399-450 21-74 (153)
298 PF07035 Mic1: Colon cancer-as 89.6 10 0.00022 31.0 14.7 92 415-517 24-115 (167)
299 PF02259 FAT: FAT domain; Int 89.4 20 0.00042 34.0 18.3 65 419-483 145-212 (352)
300 PF00515 TPR_1: Tetratricopept 89.3 0.6 1.3E-05 26.0 3.1 27 493-519 3-29 (34)
301 PF07719 TPR_2: Tetratricopept 88.9 1.1 2.3E-05 24.8 4.0 25 458-482 4-28 (34)
302 PF07719 TPR_2: Tetratricopept 88.6 0.71 1.5E-05 25.6 3.1 27 493-519 3-29 (34)
303 COG1747 Uncharacterized N-term 88.1 27 0.00058 34.0 19.2 159 385-552 63-233 (711)
304 KOG4570 Uncharacterized conser 88.1 3.7 7.9E-05 36.8 8.3 101 180-281 59-165 (418)
305 PF10579 Rapsyn_N: Rapsyn N-te 87.8 1.7 3.8E-05 29.8 4.8 47 467-513 18-65 (80)
306 KOG2066 Vacuolar assembly/sort 87.7 36 0.00079 35.0 22.7 66 459-536 638-703 (846)
307 PF13431 TPR_17: Tetratricopep 86.9 0.66 1.4E-05 26.0 2.2 31 443-475 2-33 (34)
308 PF11207 DUF2989: Protein of u 86.1 8.6 0.00019 32.3 9.0 74 437-511 123-198 (203)
309 PRK11619 lytic murein transgly 86.1 46 0.001 34.6 35.0 311 125-448 43-374 (644)
310 PF04097 Nic96: Nup93/Nic96; 86.0 46 0.00099 34.5 22.5 48 37-85 112-159 (613)
311 PRK11619 lytic murein transgly 85.8 47 0.001 34.5 28.6 133 195-335 43-181 (644)
312 KOG4234 TPR repeat-containing 85.7 5 0.00011 33.4 7.3 87 396-484 103-197 (271)
313 KOG4648 Uncharacterized conser 85.6 3.5 7.6E-05 37.3 6.9 86 396-482 105-192 (536)
314 KOG1550 Extracellular protein 85.3 35 0.00077 34.7 14.9 148 363-518 259-424 (552)
315 PF06552 TOM20_plant: Plant sp 85.2 15 0.00033 30.2 9.8 41 507-554 96-137 (186)
316 PF02284 COX5A: Cytochrome c o 85.1 13 0.00027 27.2 9.4 60 438-499 28-87 (108)
317 PF07721 TPR_4: Tetratricopept 85.1 1 2.2E-05 23.3 2.2 21 9-29 5-25 (26)
318 COG4649 Uncharacterized protei 84.9 20 0.00043 29.3 13.7 121 398-519 68-195 (221)
319 cd00923 Cyt_c_Oxidase_Va Cytoc 84.2 9.1 0.0002 27.6 7.1 62 131-193 23-84 (103)
320 PF13374 TPR_10: Tetratricopep 84.1 2.3 5.1E-05 24.8 3.9 27 456-482 3-29 (42)
321 KOG4642 Chaperone-dependent E3 84.0 19 0.00042 31.1 10.1 115 399-515 21-141 (284)
322 PF13174 TPR_6: Tetratricopept 83.8 1.9 4.1E-05 23.5 3.2 23 461-483 6-28 (33)
323 PF13181 TPR_8: Tetratricopept 83.7 2 4.3E-05 23.8 3.2 24 459-482 5-28 (34)
324 PF09670 Cas_Cas02710: CRISPR- 83.5 25 0.00055 33.6 12.4 52 430-482 141-196 (379)
325 PF13374 TPR_10: Tetratricopep 83.4 3.1 6.6E-05 24.3 4.2 29 420-448 2-30 (42)
326 COG2976 Uncharacterized protei 83.3 26 0.00056 29.4 12.3 87 427-519 96-187 (207)
327 PF13181 TPR_8: Tetratricopept 83.3 1.3 2.9E-05 24.5 2.4 27 493-519 3-29 (34)
328 PF00637 Clathrin: Region in C 83.3 0.72 1.6E-05 36.9 1.7 86 256-344 12-97 (143)
329 PRK09687 putative lyase; Provi 83.0 37 0.0008 30.9 25.9 135 387-533 141-277 (280)
330 COG4455 ImpE Protein of avirul 82.2 8.2 0.00018 32.7 7.3 64 38-102 3-66 (273)
331 KOG4642 Chaperone-dependent E3 82.1 20 0.00044 31.0 9.6 100 430-534 20-128 (284)
332 PF02284 COX5A: Cytochrome c o 82.0 14 0.00031 26.9 7.5 60 133-193 28-87 (108)
333 PF10579 Rapsyn_N: Rapsyn N-te 81.6 4.6 0.0001 27.8 4.7 51 427-478 14-66 (80)
334 COG0457 NrfG FOG: TPR repeat [ 81.3 35 0.00075 29.5 27.7 85 430-519 177-264 (291)
335 KOG1464 COP9 signalosome, subu 81.1 39 0.00084 29.9 16.9 260 281-549 21-328 (440)
336 PF04097 Nic96: Nup93/Nic96; 81.0 73 0.0016 33.0 21.7 85 324-414 265-353 (613)
337 COG2976 Uncharacterized protei 81.0 32 0.00069 28.8 14.4 127 422-554 56-189 (207)
338 COG2909 MalT ATP-dependent tra 80.9 80 0.0017 33.4 23.0 158 399-559 469-653 (894)
339 TIGR02508 type_III_yscG type I 80.7 8.1 0.00018 28.0 5.8 50 15-66 49-98 (115)
340 PHA02875 ankyrin repeat protei 80.3 60 0.0013 31.6 15.4 18 192-209 139-156 (413)
341 PF11207 DUF2989: Protein of u 80.1 11 0.00023 31.8 7.3 75 53-134 123-197 (203)
342 PF07163 Pex26: Pex26 protein; 80.0 17 0.00038 32.2 8.8 86 427-515 90-182 (309)
343 COG3947 Response regulator con 79.3 47 0.001 29.8 15.2 58 493-551 281-340 (361)
344 PF13174 TPR_6: Tetratricopept 78.8 2.2 4.7E-05 23.3 2.3 22 497-518 6-27 (33)
345 KOG2471 TPR repeat-containing 78.4 35 0.00076 33.0 10.8 107 430-536 250-382 (696)
346 COG2909 MalT ATP-dependent tra 78.4 96 0.0021 32.8 28.7 22 460-481 623-644 (894)
347 KOG0890 Protein kinase of the 78.2 1.6E+02 0.0035 35.3 25.6 60 456-519 1671-1730(2382)
348 PF13762 MNE1: Mitochondrial s 77.9 20 0.00043 28.5 7.9 82 8-89 42-133 (145)
349 COG4455 ImpE Protein of avirul 77.5 45 0.00098 28.6 12.0 126 422-556 3-137 (273)
350 KOG0991 Replication factor C, 77.4 48 0.001 28.8 11.9 99 363-465 169-282 (333)
351 KOG4648 Uncharacterized conser 77.3 18 0.00038 33.1 8.3 93 360-455 104-198 (536)
352 KOG0686 COP9 signalosome, subu 77.2 67 0.0015 30.4 12.9 53 394-446 156-213 (466)
353 KOG2062 26S proteasome regulat 76.4 99 0.0021 32.0 30.6 50 166-215 191-240 (929)
354 PRK15180 Vi polysaccharide bio 76.3 55 0.0012 31.7 11.4 99 430-531 333-433 (831)
355 KOG0276 Vesicle coat complex C 75.9 33 0.00071 34.2 10.2 109 8-140 617-746 (794)
356 TIGR03504 FimV_Cterm FimV C-te 75.8 5.7 0.00012 23.9 3.4 24 426-449 5-28 (44)
357 PF04190 DUF410: Protein of un 75.7 61 0.0013 29.1 15.5 33 284-316 88-120 (260)
358 KOG2758 Translation initiation 75.5 65 0.0014 29.4 14.9 164 374-552 21-195 (432)
359 PF02259 FAT: FAT domain; Int 75.5 74 0.0016 30.1 21.8 49 193-243 6-56 (352)
360 PF06552 TOM20_plant: Plant sp 75.4 23 0.00049 29.3 7.8 60 437-501 52-123 (186)
361 PRK10941 hypothetical protein; 74.8 38 0.00082 30.5 9.9 76 424-501 185-261 (269)
362 PRK13184 pknD serine/threonine 74.5 1.4E+02 0.003 32.7 26.0 167 352-518 687-867 (932)
363 KOG2066 Vacuolar assembly/sort 73.6 1.2E+02 0.0026 31.6 25.6 168 12-215 363-535 (846)
364 PF14853 Fis1_TPR_C: Fis1 C-te 73.3 13 0.00029 23.4 4.8 33 497-529 7-40 (53)
365 PF11846 DUF3366: Domain of un 73.1 16 0.00035 31.0 7.1 32 488-519 141-172 (193)
366 TIGR03504 FimV_Cterm FimV C-te 72.8 9 0.0002 23.0 3.8 26 120-145 4-29 (44)
367 KOG2063 Vacuolar assembly/sort 72.5 1.4E+02 0.003 32.2 14.3 27 38-64 506-532 (877)
368 PF13762 MNE1: Mitochondrial s 71.0 51 0.0011 26.2 11.9 78 391-468 42-128 (145)
369 cd00280 TRFH Telomeric Repeat 70.6 36 0.00078 28.2 7.8 48 436-483 85-139 (200)
370 PF09986 DUF2225: Uncharacteri 70.5 71 0.0015 27.7 10.6 29 493-521 167-195 (214)
371 PF13929 mRNA_stabil: mRNA sta 69.9 86 0.0019 28.4 15.8 61 384-444 198-262 (292)
372 cd00923 Cyt_c_Oxidase_Va Cytoc 69.5 41 0.00088 24.5 9.3 44 438-481 25-68 (103)
373 KOG3364 Membrane protein invol 69.2 53 0.0012 25.7 9.2 72 452-523 29-104 (149)
374 KOG2063 Vacuolar assembly/sort 68.6 1.8E+02 0.0038 31.4 23.3 58 8-65 310-375 (877)
375 PF12862 Apc5: Anaphase-promot 68.5 28 0.00061 25.2 6.5 63 431-493 9-79 (94)
376 KOG0687 26S proteasome regulat 68.3 84 0.0018 28.8 10.2 91 456-549 105-206 (393)
377 KOG0376 Serine-threonine phosp 68.2 12 0.00025 36.0 5.4 82 398-481 14-98 (476)
378 KOG1308 Hsp70-interacting prot 67.8 2.5 5.3E-05 38.4 0.9 85 430-519 124-210 (377)
379 PF14689 SPOB_a: Sensor_kinase 67.3 12 0.00025 24.7 3.8 29 454-482 22-50 (62)
380 PF07163 Pex26: Pex26 protein; 66.9 70 0.0015 28.6 9.3 88 324-412 90-182 (309)
381 smart00028 TPR Tetratricopepti 66.6 11 0.00024 19.5 3.4 21 461-481 7-27 (34)
382 PF10345 Cohesin_load: Cohesin 66.1 1.7E+02 0.0037 30.4 35.5 427 114-552 29-605 (608)
383 PF11848 DUF3368: Domain of un 64.4 29 0.00062 21.3 4.9 34 125-158 12-45 (48)
384 PF08424 NRDE-2: NRDE-2, neces 63.6 1.3E+02 0.0028 28.1 15.9 59 438-500 49-108 (321)
385 KOG0686 COP9 signalosome, subu 63.2 1.4E+02 0.0031 28.4 12.0 172 38-213 152-332 (466)
386 PF11663 Toxin_YhaV: Toxin wit 62.8 11 0.00024 29.1 3.4 34 46-81 105-138 (140)
387 PF08311 Mad3_BUB1_I: Mad3/BUB 62.5 61 0.0013 25.2 7.6 42 438-479 81-123 (126)
388 KOG0403 Neoplastic transformat 62.5 1.5E+02 0.0033 28.6 25.0 73 423-503 512-586 (645)
389 PF10366 Vps39_1: Vacuolar sor 62.5 59 0.0013 24.4 7.3 27 218-244 41-67 (108)
390 PF09986 DUF2225: Uncharacteri 62.2 1.1E+02 0.0023 26.6 10.5 54 436-489 141-199 (214)
391 PF13934 ELYS: Nuclear pore co 62.1 1.1E+02 0.0024 26.8 11.4 13 505-517 154-166 (226)
392 KOG0292 Vesicle coat complex C 61.3 1.8E+02 0.0039 30.9 12.2 136 395-556 650-785 (1202)
393 cd08819 CARD_MDA5_2 Caspase ac 60.3 59 0.0013 23.1 6.5 38 298-336 48-85 (88)
394 PF14669 Asp_Glu_race_2: Putat 60.3 1E+02 0.0022 25.9 12.3 52 393-444 137-205 (233)
395 KOG4077 Cytochrome c oxidase, 60.0 56 0.0012 25.1 6.5 44 439-482 68-111 (149)
396 PF14853 Fis1_TPR_C: Fis1 C-te 59.9 31 0.00068 21.8 4.6 21 428-448 9-29 (53)
397 PF11848 DUF3368: Domain of un 59.4 28 0.0006 21.4 4.2 36 45-80 11-46 (48)
398 KOG4507 Uncharacterized conser 59.3 1.6E+02 0.0034 29.7 11.0 148 347-498 565-717 (886)
399 KOG0403 Neoplastic transformat 59.1 1.8E+02 0.0038 28.2 19.5 61 321-383 513-573 (645)
400 COG0790 FOG: TPR repeat, SEL1 59.1 1.4E+02 0.0031 27.2 19.5 16 329-344 53-68 (292)
401 PRK12798 chemotaxis protein; R 59.1 1.7E+02 0.0038 28.1 19.3 184 366-556 125-327 (421)
402 COG5187 RPN7 26S proteasome re 59.0 1.4E+02 0.003 27.0 12.0 66 420-485 115-185 (412)
403 PRK10941 hypothetical protein; 59.0 85 0.0018 28.3 8.9 75 458-534 184-262 (269)
404 KOG2034 Vacuolar sorting prote 58.9 2.5E+02 0.0055 29.9 24.3 44 294-342 512-555 (911)
405 KOG4507 Uncharacterized conser 58.0 39 0.00085 33.5 6.9 97 431-531 618-718 (886)
406 KOG2908 26S proteasome regulat 57.9 38 0.00082 31.1 6.3 60 460-519 80-143 (380)
407 PRK10564 maltose regulon perip 57.9 20 0.00044 32.3 4.7 43 113-155 254-297 (303)
408 COG5187 RPN7 26S proteasome re 57.2 86 0.0019 28.2 8.2 96 455-550 115-218 (412)
409 PF12862 Apc5: Anaphase-promot 57.2 72 0.0016 23.1 7.1 55 465-519 8-69 (94)
410 PF10255 Paf67: RNA polymerase 56.5 1.2E+02 0.0026 29.2 9.8 61 457-518 124-191 (404)
411 TIGR02508 type_III_yscG type I 56.4 78 0.0017 23.3 8.2 50 293-344 46-95 (115)
412 PF11123 DNA_Packaging_2: DNA 55.5 57 0.0012 22.1 5.2 49 506-554 12-75 (82)
413 PF08311 Mad3_BUB1_I: Mad3/BUB 55.0 98 0.0021 24.0 8.6 44 473-517 81-125 (126)
414 KOG4077 Cytochrome c oxidase, 55.0 89 0.0019 24.1 6.8 47 133-179 67-113 (149)
415 PRK15180 Vi polysaccharide bio 54.7 2.2E+02 0.0047 27.9 24.6 117 16-145 300-421 (831)
416 PF14689 SPOB_a: Sensor_kinase 54.5 40 0.00086 22.1 4.6 45 471-518 6-50 (62)
417 KOG0890 Protein kinase of the 53.7 4.9E+02 0.011 31.7 31.0 65 491-556 1670-1734(2382)
418 PF11817 Foie-gras_1: Foie gra 53.2 53 0.0012 29.2 6.8 21 461-481 184-204 (247)
419 KOG0991 Replication factor C, 52.9 1.6E+02 0.0034 25.8 11.8 122 392-519 134-266 (333)
420 PF11846 DUF3366: Domain of un 52.5 53 0.0011 27.8 6.4 41 513-554 133-174 (193)
421 COG5108 RPO41 Mitochondrial DN 52.3 89 0.0019 31.8 8.3 77 76-162 33-115 (1117)
422 cd08819 CARD_MDA5_2 Caspase ac 51.8 85 0.0018 22.3 6.6 35 198-233 49-83 (88)
423 PF13934 ELYS: Nuclear pore co 51.2 1.7E+02 0.0037 25.6 12.9 112 382-505 73-186 (226)
424 COG0735 Fur Fe2+/Zn2+ uptake r 51.2 74 0.0016 25.4 6.6 48 117-164 22-69 (145)
425 KOG1586 Protein required for f 51.1 1.7E+02 0.0037 25.6 18.0 62 393-454 118-188 (288)
426 PF15469 Sec5: Exocyst complex 50.4 70 0.0015 26.8 6.7 90 459-565 90-180 (182)
427 PRK13342 recombination factor 50.2 2.5E+02 0.0055 27.4 16.4 44 320-364 230-276 (413)
428 KOG4279 Serine/threonine prote 50.1 3.3E+02 0.0071 28.6 12.5 94 390-483 203-315 (1226)
429 PF13929 mRNA_stabil: mRNA sta 48.8 2.1E+02 0.0046 26.0 19.8 111 200-310 143-262 (292)
430 PF07575 Nucleopor_Nup85: Nup8 48.6 3.2E+02 0.007 28.1 15.7 27 5-32 149-175 (566)
431 PF04910 Tcf25: Transcriptiona 48.0 2.5E+02 0.0055 26.7 18.9 27 353-379 40-66 (360)
432 PRK13800 putative oxidoreducta 47.5 4.3E+02 0.0093 29.2 26.3 132 386-525 754-886 (897)
433 KOG4521 Nuclear pore complex, 47.4 4.4E+02 0.0096 29.4 13.9 117 422-546 985-1124(1480)
434 PF04190 DUF410: Protein of un 46.4 2.2E+02 0.0048 25.6 15.4 142 123-280 18-170 (260)
435 PF09868 DUF2095: Uncharacteri 46.3 45 0.00099 24.8 4.1 32 41-73 66-97 (128)
436 smart00638 LPD_N Lipoprotein N 46.1 3.5E+02 0.0077 27.9 22.2 59 185-245 310-369 (574)
437 KOG2908 26S proteasome regulat 44.2 1.9E+02 0.0042 26.8 8.5 56 400-455 87-155 (380)
438 KOG2659 LisH motif-containing 44.0 2.2E+02 0.0047 24.8 10.6 102 415-519 21-131 (228)
439 KOG3364 Membrane protein invol 43.9 1.6E+02 0.0035 23.2 7.9 65 418-483 30-99 (149)
440 PHA02875 ankyrin repeat protei 43.8 3.2E+02 0.0068 26.6 19.3 195 123-335 7-217 (413)
441 PF03745 DUF309: Domain of unk 42.5 49 0.0011 21.7 3.6 48 46-93 9-61 (62)
442 KOG1550 Extracellular protein 42.4 4E+02 0.0086 27.4 21.7 17 228-244 261-277 (552)
443 PRK13342 recombination factor 42.4 3.4E+02 0.0073 26.5 17.3 47 423-469 230-279 (413)
444 PRK10564 maltose regulon perip 42.1 54 0.0012 29.7 4.9 37 422-458 259-295 (303)
445 PF10366 Vps39_1: Vacuolar sor 42.1 1.5E+02 0.0032 22.3 7.8 27 117-143 41-67 (108)
446 KOG2396 HAT (Half-A-TPR) repea 42.0 3.6E+02 0.0078 26.8 33.7 79 55-144 90-169 (568)
447 PF12968 DUF3856: Domain of Un 41.9 1.6E+02 0.0034 22.6 10.5 83 467-549 21-125 (144)
448 PF09477 Type_III_YscG: Bacter 41.2 1.5E+02 0.0033 22.2 8.1 78 165-245 21-98 (116)
449 PF11663 Toxin_YhaV: Toxin wit 41.0 36 0.00078 26.5 3.1 30 433-464 108-137 (140)
450 PF09477 Type_III_YscG: Bacter 41.0 1.5E+02 0.0033 22.1 8.8 75 267-344 22-96 (116)
451 COG5108 RPO41 Mitochondrial DN 40.6 2.2E+02 0.0048 29.2 9.0 75 358-432 33-115 (1117)
452 TIGR03581 EF_0839 conserved hy 40.6 1.5E+02 0.0032 25.4 6.8 79 403-481 136-234 (236)
453 COG4785 NlpI Lipoprotein NlpI, 40.5 2.4E+02 0.0053 24.4 17.7 61 185-245 99-162 (297)
454 smart00386 HAT HAT (Half-A-TPR 40.1 58 0.0013 17.1 4.2 15 470-484 2-16 (33)
455 PRK11639 zinc uptake transcrip 40.0 1E+02 0.0022 25.5 6.0 67 21-87 10-76 (169)
456 PF14669 Asp_Glu_race_2: Putat 39.4 2.4E+02 0.0051 23.9 13.7 55 256-310 137-205 (233)
457 KOG2471 TPR repeat-containing 39.2 1.2E+02 0.0026 29.7 6.8 104 397-503 249-381 (696)
458 COG2137 OraA Uncharacterized p 39.1 2.3E+02 0.0049 23.6 12.4 111 404-518 54-165 (174)
459 PRK11639 zinc uptake transcrip 39.1 1.4E+02 0.0031 24.6 6.7 47 118-164 28-74 (169)
460 PF11768 DUF3312: Protein of u 38.9 1.5E+02 0.0033 29.6 7.6 21 498-518 501-521 (545)
461 KOG3807 Predicted membrane pro 38.6 1.3E+02 0.0027 27.7 6.5 99 429-527 249-349 (556)
462 KOG0376 Serine-threonine phosp 38.1 62 0.0013 31.4 4.9 101 361-465 12-115 (476)
463 KOG2659 LisH motif-containing 38.1 2.7E+02 0.0059 24.2 8.9 91 391-481 29-129 (228)
464 KOG1497 COP9 signalosome, subu 38.0 3.3E+02 0.0072 25.2 14.5 97 459-555 107-215 (399)
465 KOG4567 GTPase-activating prot 38.0 3.3E+02 0.0071 25.1 9.0 43 237-279 264-306 (370)
466 COG0735 Fur Fe2+/Zn2+ uptake r 37.5 1.2E+02 0.0025 24.3 5.8 62 24-85 8-69 (145)
467 PF08424 NRDE-2: NRDE-2, neces 37.5 3.5E+02 0.0076 25.3 14.0 118 373-491 51-190 (321)
468 PF11838 ERAP1_C: ERAP1-like C 37.1 3.5E+02 0.0075 25.1 19.3 108 404-516 146-262 (324)
469 PF04034 DUF367: Domain of unk 36.6 2E+02 0.0044 22.3 7.1 60 387-446 65-125 (127)
470 COG3947 Response regulator con 36.6 3.4E+02 0.0073 24.8 15.4 58 458-517 282-339 (361)
471 KOG2422 Uncharacterized conser 36.4 4.7E+02 0.01 26.5 16.4 201 328-536 249-496 (665)
472 KOG2062 26S proteasome regulat 36.4 5.4E+02 0.012 27.1 30.1 309 225-556 366-694 (929)
473 KOG4567 GTPase-activating prot 35.8 3.5E+02 0.0076 24.9 8.6 70 170-240 263-342 (370)
474 KOG0545 Aryl-hydrocarbon recep 35.4 3.2E+02 0.0069 24.2 8.8 54 428-483 238-292 (329)
475 cd07153 Fur_like Ferric uptake 35.3 95 0.0021 23.5 4.9 45 120-164 5-49 (116)
476 KOG1308 Hsp70-interacting prot 35.2 48 0.001 30.6 3.5 90 399-491 125-217 (377)
477 KOG3636 Uncharacterized conser 35.1 3.3E+02 0.0072 26.3 8.8 84 144-228 177-272 (669)
478 PF10475 DUF2450: Protein of u 34.9 1.9E+02 0.0042 26.5 7.6 24 452-475 194-217 (291)
479 PF04762 IKI3: IKI3 family; I 34.2 6.9E+02 0.015 27.8 15.9 112 421-550 813-927 (928)
480 PF10475 DUF2450: Protein of u 34.1 3.7E+02 0.0081 24.7 9.4 50 293-344 105-154 (291)
481 cd07153 Fur_like Ferric uptake 33.9 78 0.0017 23.9 4.2 48 41-88 5-52 (116)
482 KOG0687 26S proteasome regulat 33.6 4E+02 0.0086 24.8 13.3 92 390-483 106-209 (393)
483 KOG0292 Vesicle coat complex C 33.3 5.6E+02 0.012 27.7 10.7 132 294-449 651-782 (1202)
484 PRK13800 putative oxidoreducta 32.8 7.2E+02 0.016 27.5 24.8 248 283-552 632-880 (897)
485 PLN03025 replication factor C 32.2 4.2E+02 0.0092 24.7 10.2 84 470-557 159-257 (319)
486 PRK14956 DNA polymerase III su 31.6 4.3E+02 0.0093 26.4 9.5 83 472-557 183-281 (484)
487 PF11817 Foie-gras_1: Foie gra 31.0 2.1E+02 0.0045 25.5 7.0 58 493-551 180-245 (247)
488 PRK14963 DNA polymerase III su 31.0 4.4E+02 0.0096 26.6 9.8 84 470-557 176-274 (504)
489 PRK14700 recombination factor 30.5 4.3E+02 0.0094 24.3 10.5 45 426-470 129-176 (300)
490 COG4003 Uncharacterized protei 30.2 1.3E+02 0.0028 20.9 4.0 39 33-72 27-66 (98)
491 PF02847 MA3: MA3 domain; Int 30.0 1.6E+02 0.0036 22.0 5.4 21 323-343 8-28 (113)
492 PHA03100 ankyrin repeat protei 29.8 5.7E+02 0.012 25.5 16.0 40 172-211 158-199 (480)
493 KOG1811 Predicted Zn2+-binding 29.7 5E+02 0.011 26.4 9.4 76 491-569 587-665 (1141)
494 cd02683 MIT_1 MIT: domain cont 29.3 2E+02 0.0043 20.0 6.6 14 467-480 18-31 (77)
495 PF07720 TPR_3: Tetratricopept 29.2 1.2E+02 0.0025 17.3 3.6 22 526-548 4-25 (36)
496 PRK13184 pknD serine/threonine 29.2 8.2E+02 0.018 27.1 23.9 321 222-556 481-872 (932)
497 PRK07914 hypothetical protein; 29.1 4.5E+02 0.0098 24.5 9.2 20 538-557 209-228 (320)
498 PF01475 FUR: Ferric uptake re 28.9 95 0.0021 23.7 4.0 46 119-164 11-56 (120)
499 PF11768 DUF3312: Protein of u 28.9 6.2E+02 0.014 25.6 10.6 55 10-64 413-472 (545)
500 PF00244 14-3-3: 14-3-3 protei 28.7 4.1E+02 0.0089 23.5 9.1 157 394-552 7-197 (236)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.2e-87 Score=703.79 Aligned_cols=567 Identities=32% Similarity=0.599 Sum_probs=553.2
Q ss_pred CCCCCcchhhHHHHHhhcCChhhHHHHhccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHH
Q 046221 1 PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVA 80 (572)
Q Consensus 1 p~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 80 (572)
|.++..++|.|+..|++.|+++.|.++|++|++||..+||++|.+|++.|++++|+++|++|...|+.||..||+.++.+
T Consensus 117 ~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~ 196 (857)
T PLN03077 117 PSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRT 196 (857)
T ss_pred CCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCChHHHHHHHHHHHHhcCCCCc----------------------ccCCCCCCceeHHHHHHHHHhCCChHHHHHHH
Q 046221 81 AAGLQNLELARSIHGLMVKFGLESDL----------------------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLF 138 (572)
Q Consensus 81 ~~~~g~~~~a~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 138 (572)
|+..++++.+.+++..+.+.|..++. |+.++.||+.+||++|.+|++.|++++|+++|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf 276 (857)
T PLN03077 197 CGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELF 276 (857)
T ss_pred hCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999999999999988775 88999999999999999999999999999999
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHHHHHHhCCCHHHHHHHHhhcCCCCccc
Q 046221 139 NFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVIS 218 (572)
Q Consensus 139 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 218 (572)
++|.+.|+.||..||+.++.+|++.|+.+.+.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|++|..||..+
T Consensus 277 ~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s 356 (857)
T PLN03077 277 FTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVS 356 (857)
T ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCccchHHHHHHhcccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHh
Q 046221 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSK 298 (572)
Q Consensus 219 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 298 (572)
|+.+|.+|.+.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+++.|+.+|++
T Consensus 357 ~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k 436 (857)
T PLN03077 357 WTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSK 436 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHhccCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHH
Q 046221 299 CGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGI 378 (572)
Q Consensus 299 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 378 (572)
.|++++|.++|++|.++|+.+|+.+|.+|++.|+.++|+.+|++|. . +..||..||..++.+|++.|+++.+.+++..
T Consensus 437 ~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~-~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~ 514 (857)
T PLN03077 437 CKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML-L-TLKPNSVTLIAALSACARIGALMCGKEIHAH 514 (857)
T ss_pred cCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHH-h-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHH
Confidence 9999999999999999999999999999999999999999999996 3 6999999999999999999999999999999
Q ss_pred HHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHH
Q 046221 379 AFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458 (572)
Q Consensus 379 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~ 458 (572)
+.+.|+.++..++++++++|+++|++++|.++|+.+ .||..+||++|.+|++.|+.++|+++|++|.+.|+.||..||
T Consensus 515 ~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~ 592 (857)
T PLN03077 515 VLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTF 592 (857)
T ss_pred HHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccH
Confidence 999999999999999999999999999999999999 699999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccCCCChHHHHHHHHHHhhh--
Q 046221 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH-- 536 (572)
Q Consensus 459 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-- 536 (572)
+.++.+|++.|++++|.++|+.|.+..|+.|+..+|++++++|.+.|++++|.+++++|.-.|+..+|.+|+.+|..+
T Consensus 593 ~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~ 672 (857)
T PLN03077 593 ISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRH 672 (857)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999999998788999999999999999999999999999999997799999999999988643
Q ss_pred -------------------------------cCCHHHHHHHHHHHHhCCCCCCCceeEEEcCCccC
Q 046221 537 -------------------------------VGRFQDAEALRSGSQKKGIIKIPGISFLNSTSRDF 571 (572)
Q Consensus 537 -------------------------------~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 571 (572)
.|+|++|.++.+.|.++|++++||+||+.+++.|+
T Consensus 673 ~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~ 738 (857)
T PLN03077 673 VELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVH 738 (857)
T ss_pred hHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEE
Confidence 69999999999999999999999999999998875
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3e-76 Score=618.03 Aligned_cols=543 Identities=27% Similarity=0.393 Sum_probs=521.1
Q ss_pred CCCCCcchhhHHHHHhhcCChhhHHHHhccCCC----CChhhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHH
Q 046221 1 PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPE----KNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVG 76 (572)
Q Consensus 1 p~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 76 (572)
|.|+..++|.++..|++.|++++|..+|+.+++ |+..+|..++.++.+.+.++.+..++..+.+.|..++...++.
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~ 126 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA 126 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH
Confidence 356788899999999999999999999999876 7888999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCChHHHHHHHHHHHHhcCCCCcccCCCCCCceeHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHH
Q 046221 77 VLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTV 156 (572)
Q Consensus 77 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 156 (572)
++..|++.|+++.|.++|++| ++||+.+||.+|.+|++.|++++|+++|++|...|+.||..||+.+
T Consensus 127 li~~~~~~g~~~~A~~~f~~m-------------~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~l 193 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKM-------------PERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCV 193 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcC-------------CCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHH
Confidence 999999999999999996655 4589999999999999999999999999999999999999999999
Q ss_pred HHHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHccCCHHHHH
Q 046221 157 IRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDAL 236 (572)
Q Consensus 157 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 236 (572)
+++|+..+++..+.+++..+.+.|+.||..++++|+.+|++.|+++.|.++|++|..+|..+||.+|.+|++.|++++|+
T Consensus 194 l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl 273 (857)
T PLN03077 194 LRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGL 273 (857)
T ss_pred HHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCccchHHHHHHhcccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHHHHHHhccCCCC
Q 046221 237 KIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKS 316 (572)
Q Consensus 237 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 316 (572)
++|.+|...|+.||..||+.++.+|++.|+.+.+.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|++|.++|
T Consensus 274 ~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d 353 (857)
T PLN03077 274 ELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKD 353 (857)
T ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 046221 317 LVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396 (572)
Q Consensus 317 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 396 (572)
..+|+.++.+|++.|++++|+++|++|. ..+..||..||..++.+|++.|+++.|.++++.+.+.|+.|+..+|++++.
T Consensus 354 ~~s~n~li~~~~~~g~~~~A~~lf~~M~-~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~ 432 (857)
T PLN03077 354 AVSWTAMISGYEKNGLPDKALETYALME-QDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIE 432 (857)
T ss_pred eeeHHHHHHHHHhCCCHHHHHHHHHHHH-HhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 9999999999999999999999999998 889999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCChHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHH
Q 046221 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLV 476 (572)
Q Consensus 397 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 476 (572)
+|++.|++++|.++|++|.. +|..+|+.++.+|++.|+.++|+.+|++|.. ++.||..||..++.+|++.|+.+.+.+
T Consensus 433 ~y~k~g~~~~A~~vf~~m~~-~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~ 510 (857)
T PLN03077 433 MYSKCKCIDKALEVFHNIPE-KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKE 510 (857)
T ss_pred HHHHcCCHHHHHHHHHhCCC-CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHH
Confidence 99999999999999999965 7899999999999999999999999999986 599999999999999999999999999
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccCCCChHHHHHHHHHHhhhcCCHHHHHHHHHHHHhCCCC
Q 046221 477 IFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGII 556 (572)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~A~~~~~~m~~~~~~ 556 (572)
++..++ +.|+.+|..++++|+++|.++|++++|.++|+.+ .+|..+|+.++.+|..+ |+.++|+++|++|.+.|+.
T Consensus 511 i~~~~~-~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~-G~~~~A~~lf~~M~~~g~~ 586 (857)
T PLN03077 511 IHAHVL-RTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAH-GKGSMAVELFNRMVESGVN 586 (857)
T ss_pred HHHHHH-HhCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCC
Confidence 999996 6789999999999999999999999999999998 78889999999999888 9999999999999999998
Q ss_pred CCCceeE
Q 046221 557 KIPGISF 563 (572)
Q Consensus 557 ~~~~~~~ 563 (572)
|+..+..
T Consensus 587 Pd~~T~~ 593 (857)
T PLN03077 587 PDEVTFI 593 (857)
T ss_pred CCcccHH
Confidence 8765543
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.5e-70 Score=561.39 Aligned_cols=483 Identities=22% Similarity=0.366 Sum_probs=442.9
Q ss_pred CCCcchhhHHHHHhhcCChhhHHHHhccCCC-----CChhhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHH
Q 046221 3 IDPYNSSKLLSNYFKSGKIKEAENLFDEIPE-----KNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGV 77 (572)
Q Consensus 3 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 77 (572)
++..+|+.++..|.+.|++++|+++|+.|.. ||..+|+.++.++.+.++++.|.+++..|.+.|+.||..+|+.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 4556899999999999999999999998853 68899999999999999999999999999999999999999999
Q ss_pred HHHHcCCCChHHHHHHHHHHHHhcCCCCcccCCCCCCceeHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 046221 78 LVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157 (572)
Q Consensus 78 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 157 (572)
+..|++.|+++.|.++|++| +.||..+||.++.+|++.|++++|+++|++|.+.|+.|+..||+.++
T Consensus 165 i~~y~k~g~~~~A~~lf~~m-------------~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll 231 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEM-------------PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVML 231 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcC-------------CCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHH
Confidence 99999999999999996665 35899999999999999999999999999999999999999999999
Q ss_pred HHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHccCCHHHHHH
Q 046221 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALK 237 (572)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 237 (572)
.+|+..|..+.+.+++..+.+.|+.||..+|++|+++|++.|++++|.++|++|..+|+.+||.+|.+|++.|++++|.+
T Consensus 232 ~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~ 311 (697)
T PLN03081 232 RASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALC 311 (697)
T ss_pred HHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCccchHHHHHHhcccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHHHHHHhccCCCCc
Q 046221 238 IFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSL 317 (572)
Q Consensus 238 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 317 (572)
+|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..++++|+++|++.|++++|.++|++|.++|+
T Consensus 312 lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~ 391 (697)
T PLN03081 312 LYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNL 391 (697)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 046221 318 VSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397 (572)
Q Consensus 318 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 397 (572)
.+||.+|.+|++.|+.++|+++|++|. ..|..
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~-~~g~~----------------------------------------------- 423 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMI-AEGVA----------------------------------------------- 423 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCC-----------------------------------------------
Confidence 999999999999999999999999997 43333
Q ss_pred hhhcCChHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHhccCChHHHHH
Q 046221 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTE-TGEVPDSSTYLSILNACGHAGLTNDGLV 476 (572)
Q Consensus 398 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 476 (572)
||..||+.++.+|.+.|+.++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.+
T Consensus 424 --------------------Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 424 --------------------PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred --------------------CCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 6666666666777777777777777777765 4788888888888888888888888888
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC-CC-ChHHHHHHHHHHhhhcCCHHHHHHHHHHHHhCC
Q 046221 477 IFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE-GM-GPNIWRALLSGCVLHVGRFQDAEALRSGSQKKG 554 (572)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~g~~~~A~~~~~~m~~~~ 554 (572)
++++| ++.|+..+|++|+.+|...|+++.|..+++++.+ .| +..+|..|+..|... |+|++|.+++++|.++|
T Consensus 484 ~~~~~----~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~-G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 484 MIRRA----PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSS-GRQAEAAKVVETLKRKG 558 (697)
T ss_pred HHHHC----CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhC-CCHHHHHHHHHHHHHcC
Confidence 77655 4678888888888888888888888888888776 44 466899999999888 99999999999999999
Q ss_pred CCCCCceeEEEcCCccC
Q 046221 555 IIKIPGISFLNSTSRDF 571 (572)
Q Consensus 555 ~~~~~~~~~~~~~~~~~ 571 (572)
+++.|++||+.+++.++
T Consensus 559 ~~k~~g~s~i~~~~~~~ 575 (697)
T PLN03081 559 LSMHPACTWIEVKKQDH 575 (697)
T ss_pred CccCCCeeEEEECCeEE
Confidence 99999999999998775
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.1e-69 Score=556.45 Aligned_cols=509 Identities=15% Similarity=0.177 Sum_probs=448.0
Q ss_pred CChhhHHHHHHHHhhCCChHHHHHHHHHHHHcCC-CCCcchHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCcccCCCC
Q 046221 34 KNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGL-LPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKN 112 (572)
Q Consensus 34 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 112 (572)
++...|..++..+++.|++++|+++|++|.+.|+ .++..+++.++..|.+.|..++|..+++.|. .
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~-------------~ 434 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR-------------N 434 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC-------------C
Confidence 5677888888888899999999999999988885 4667777888888888899999988876663 3
Q ss_pred CCceeHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHH
Q 046221 113 PYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVL 192 (572)
Q Consensus 113 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 192 (572)
||..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI 514 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCHHHHHHHHhhcCC----CCcccHHHHHHHHHccCCHHHHHHHHHHHHh--CCCCCCccchHHHHHHhcccCC
Q 046221 193 DMYSCLMDLDAAIQIFREMEC----KDVISWTRMMGLFVDFEYAGDALKIFREMRK--SRIICDTVALLNLISVNAILGD 266 (572)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~p~~~~~~~ll~~~~~~~~ 266 (572)
.+|++.|++++|.++|+.|.+ ||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|+
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ 594 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCC
Confidence 999999999999999988864 7888999999999999999999999999976 5688999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHHHHHHhccCC----CCcchHHHHHHHHHHcCChHHHHHHHHH
Q 046221 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE----KSLVSWTAIISGYVQNGCAREALNQFIK 342 (572)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 342 (572)
+++|.++|+.|.+.++.|+..+|+.++.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.+++++
T Consensus 595 ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~e 674 (1060)
T PLN03218 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQD 674 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998874 6778999999999999999999999999
Q ss_pred HHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc---CCCCC
Q 046221 343 MRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM---GFLRD 419 (572)
Q Consensus 343 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~ 419 (572)
|. ..|..||..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++| ++.||
T Consensus 675 M~-k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd 753 (1060)
T PLN03218 675 AR-KQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753 (1060)
T ss_pred HH-HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 98 888999999999999999999999999999999998899999999999999999999999999999988 88899
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc-----------------------cCChHHHHH
Q 046221 420 VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH-----------------------AGLTNDGLV 476 (572)
Q Consensus 420 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~-----------------------~g~~~~a~~ 476 (572)
..+|+.++.+|++.|+++.|.+++++|.+.|+.||..+|+.++..|.+ .+..+.|..
T Consensus 754 ~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~ 833 (1060)
T PLN03218 754 TITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALM 833 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHH
Confidence 999999999999999999999999999999999999999988865432 122467999
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC---CCChHHHHHHHHHHhhhcCCHHHHHHHHHHHHhC
Q 046221 477 IFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE---GMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKK 553 (572)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~l~~~~~~~~g~~~~A~~~~~~m~~~ 553 (572)
+|++|+ ..|+.||..+|+.++.++.+.+..+.+..+++.|.. .|+..+|+.|+.++.. ..++|..++++|.+.
T Consensus 834 lf~eM~-~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~---~~~~A~~l~~em~~~ 909 (1060)
T PLN03218 834 VYRETI-SAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGE---YDPRAFSLLEEAASL 909 (1060)
T ss_pred HHHHHH-HCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhcc---ChHHHHHHHHHHHHc
Confidence 999996 778999999999999999999999999999998865 6778899999998732 236899999999999
Q ss_pred CCCCCCc
Q 046221 554 GIIKIPG 560 (572)
Q Consensus 554 ~~~~~~~ 560 (572)
|+.|+..
T Consensus 910 Gi~p~~~ 916 (1060)
T PLN03218 910 GVVPSVS 916 (1060)
T ss_pred CCCCCcc
Confidence 9998765
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.3e-69 Score=551.96 Aligned_cols=500 Identities=14% Similarity=0.146 Sum_probs=466.4
Q ss_pred CCCcchhhHHHHHhhcCChhhHHHHhccCCCC-----ChhhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHH
Q 046221 3 IDPYNSSKLLSNYFKSGKIKEAENLFDEIPEK-----NVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGV 77 (572)
Q Consensus 3 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 77 (572)
++...|..++..+++.|++++|+++|++|+++ +...++.++.+|.+.|.+++|+.+|+.|.. ||..+|+.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 56677888999999999999999999999874 445667788889999999999999999974 999999999
Q ss_pred HHHHcCCCChHHHHHHHHHHHHhcCCCCcccCCCCCCceeHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 046221 78 LVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVI 157 (572)
Q Consensus 78 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 157 (572)
+.+|++.|+++.|.++++.|.+.|+. ||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.+|
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~---------pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI 514 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLK---------ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCC---------CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999984 889999999999999999999999999999999999999999999
Q ss_pred HHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHHHHHHhCCCHHHHHHHHhhcC------CCCcccHHHHHHHHHccCC
Q 046221 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME------CKDVISWTRMMGLFVDFEY 231 (572)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~li~~~~~~~~ 231 (572)
.+|++.|++++|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|+
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ 594 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999999999999999999999999999999999995 3789999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCccchHHHHHHhcccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHHHHHHhc
Q 046221 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQ 311 (572)
Q Consensus 232 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 311 (572)
+++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.
T Consensus 595 ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~e 674 (1060)
T PLN03218 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQD 674 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC----CCcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCc
Q 046221 312 ITE----KSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRY 387 (572)
Q Consensus 312 ~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 387 (572)
|.+ |+..+|+.+|.+|++.|++++|.++|++|. ..+..||..+|+.++.+|++.|++++|.++|+.|.+.|+.||
T Consensus 675 M~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~-~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd 753 (1060)
T PLN03218 675 ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK-SIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 974 688999999999999999999999999998 789999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhhcCChHHHHHHHHHc---CCCCCHhHHHHHHHHHHh----c-------------------CChHHHHH
Q 046221 388 RSVQNCLISSYSKCGNVDLAYIVFEEM---GFLRDVVSWNTIIYGYGV----N-------------------GHGETALA 441 (572)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~----~-------------------~~~~~A~~ 441 (572)
..+|+.++.+|++.|++++|.+++++| ++.||..+|+.++..|.+ . +..+.|..
T Consensus 754 ~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~ 833 (1060)
T PLN03218 754 TITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALM 833 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHH
Confidence 999999999999999999999999999 899999999999865432 1 22467999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC
Q 046221 442 LYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 442 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
+|++|.+.|+.||..||+.++.++++.+..+.+..+++.|. ..+..|+..+|+++++++.+. .++|..++++|..
T Consensus 834 lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~-~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~ 908 (1060)
T PLN03218 834 VYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLG-ISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAAS 908 (1060)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhc-cCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHH
Confidence 99999999999999999999998889999999999998884 667889999999999998432 4689999999987
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.7e-65 Score=524.34 Aligned_cols=441 Identities=29% Similarity=0.496 Sum_probs=429.4
Q ss_pred CCCceeHHHHHHHHHhCCChHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHhH
Q 046221 112 NPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSG-LVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNS 190 (572)
Q Consensus 112 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 190 (572)
.++..+|+.+|.++.+.|++++|+++|+.|...+ ..||..+|+.++.+|++.++.+.+.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3567799999999999999999999999999864 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCccchHHHHHHhcccCChHHH
Q 046221 191 VLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG 270 (572)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 270 (572)
++.+|++.|+++.|.++|++|.+||..+||.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|+.+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 046221 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDS 350 (572)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 350 (572)
.+++..+.+.|+.+|..++++|+.+|++.|++++|.++|++|.++|+++||.++.+|++.|++++|+++|++|. ..|..
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~-~~g~~ 322 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMR-DSGVS 322 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998 89999
Q ss_pred CCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 046221 351 VDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGY 430 (572)
Q Consensus 351 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~ 430 (572)
||..||+.++.+|++.|+++.|.+++..|.+.|++|+..+|++++.+|+++|++++|.++|++|.. ||..+||.||.+|
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-~d~~t~n~lI~~y 401 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR-KNLISWNALIAGY 401 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC-CCeeeHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999965 8999999999999
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHH
Q 046221 431 GVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510 (572)
Q Consensus 431 ~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 510 (572)
++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+..|+.|+..+|+.++++|.+.|++++|
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999987789999999999999999999999999
Q ss_pred HHHHHhccCCCChHHHHHHHHHHhhhcCCHHHHHHHHHHHHhCCC
Q 046221 511 SGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGI 555 (572)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~A~~~~~~m~~~~~ 555 (572)
.+++++|...|+..+|++|+.+|..+ |+++.|..+++++.+.++
T Consensus 482 ~~~~~~~~~~p~~~~~~~Ll~a~~~~-g~~~~a~~~~~~l~~~~p 525 (697)
T PLN03081 482 YAMIRRAPFKPTVNMWAALLTACRIH-KNLELGRLAAEKLYGMGP 525 (697)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHc-CCcHHHHHHHHHHhCCCC
Confidence 99999998899999999999999998 999999999999976544
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.3e-33 Score=304.44 Aligned_cols=533 Identities=11% Similarity=0.004 Sum_probs=263.2
Q ss_pred CcchhhHHHHHhhcCChhhHHHHhccCCC---CChhhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 046221 5 PYNSSKLLSNYFKSGKIKEAENLFDEIPE---KNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAA 81 (572)
Q Consensus 5 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 81 (572)
+..+..+...+.+.|++++|...++.+.. .+...+..+...+.+.|++++|.++|+++.+.. +.+...+..+...+
T Consensus 329 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 407 (899)
T TIGR02917 329 HQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISK 407 (899)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34455566667777777777777766554 345566666677777777777777777766543 22334455555566
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCCc------------------------ccCCCCCCceeHHHHHHHHHhCCChHHHHHH
Q 046221 82 AGLQNLELARSIHGLMVKFGLESDL------------------------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLL 137 (572)
Q Consensus 82 ~~~g~~~~a~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 137 (572)
...|++++|...++.+.+..+.... ......++...|+.+...+...|++++|.+.
T Consensus 408 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 487 (899)
T TIGR02917 408 LSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREA 487 (899)
T ss_pred HhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHH
Confidence 6666666666666666655431100 0000002233444444444444444444444
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHHHHHHhCCCHHHHHHHHhhcCC---C
Q 046221 138 FNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC---K 214 (572)
Q Consensus 138 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~ 214 (572)
|+++.+.. +.+...+..+...+...|++++|.+.++.+.+.+ +.+..++..+...+.+.|+.++|...++++.. .
T Consensus 488 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 565 (899)
T TIGR02917 488 FEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ 565 (899)
T ss_pred HHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 44444321 1122333344444444444444444444444432 23344444444444445555555555444432 1
Q ss_pred CcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCccchHHHHHHhcccCChHHHHHHHHHHHHhCCCCCcchHHHHHH
Q 046221 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIA 294 (572)
Q Consensus 215 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 294 (572)
+...+..++..+...|++++|..+++.+.+. .+.+..++..+..++...|++++|...++.+.+.. +.+...+..+..
T Consensus 566 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 643 (899)
T TIGR02917 566 EIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLAD 643 (899)
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 2333444445555555555555555554433 12333444444555555555555555555554433 223334444455
Q ss_pred HHHhcCChhHHHHHHhccCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHH
Q 046221 295 MYSKCGDLDSSRSVFNQITE---KSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEI 371 (572)
Q Consensus 295 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 371 (572)
++.+.|++++|...|+++.+ .+..++..++..+...|++++|..+++.+. . ..+.+...+..+...+...|+++.
T Consensus 644 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~g~~~~ 721 (899)
T TIGR02917 644 AYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQ-K-QHPKAALGFELEGDLYLRQKDYPA 721 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-h-hCcCChHHHHHHHHHHHHCCCHHH
Confidence 55555555555555544432 123344445555555555555555555553 1 123334444444455555555555
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc--CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 046221 372 CLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM--GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449 (572)
Q Consensus 372 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 449 (572)
|...++.+...+ |+..++..+..++.+.|++++|.+.++++ ..+.+...+..+...|...|++++|..+|+++.+.
T Consensus 722 A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 722 AIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred HHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 555555554433 22234444555555555555555555554 22233444555555555555555555555555553
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC--CCChHHHH
Q 046221 450 GEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE--GMGPNIWR 527 (572)
Q Consensus 450 g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ 527 (572)
. +++..++..+...+...|+ .+|+.+++++++.. +-+..++..+..++.+.|++++|.+.++++.+ +.++.++.
T Consensus 800 ~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 875 (899)
T TIGR02917 800 A-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA--PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRY 875 (899)
T ss_pred C-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Confidence 1 2234455555555555555 44555555554322 22333444555555555555555555555554 22444555
Q ss_pred HHHHHHhhhcCCHHHHHHHHHHHH
Q 046221 528 ALLSGCVLHVGRFQDAEALRSGSQ 551 (572)
Q Consensus 528 ~l~~~~~~~~g~~~~A~~~~~~m~ 551 (572)
.+...+... |++++|.+++++|.
T Consensus 876 ~l~~~~~~~-g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 876 HLALALLAT-GRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHc-CCHHHHHHHHHHHh
Confidence 555555444 55555555555553
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.2e-33 Score=300.49 Aligned_cols=526 Identities=11% Similarity=0.018 Sum_probs=377.7
Q ss_pred hhhHHHHHhhcCChhhHHHHhccCCC---CChhhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHcCC
Q 046221 8 SSKLLSNYFKSGKIKEAENLFDEIPE---KNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGL 84 (572)
Q Consensus 8 ~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 84 (572)
+..+...+...|++++|...|+++.+ .+...+..+...+.+.|++++|+..++.+.+.+ +.+...+..+...+.+.
T Consensus 298 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 376 (899)
T TIGR02917 298 LLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLAL 376 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHC
Confidence 34456678899999999999998764 355677888889999999999999999998765 55667888889999999
Q ss_pred CChHHHHHHHHHHHHhcCCCCcccCCCCCCceeHHHHHHHHHhCC----------------------------------C
Q 046221 85 QNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNK----------------------------------L 130 (572)
Q Consensus 85 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------------------------~ 130 (572)
|++++|..+++.+.+..+. +...+..+...+...| +
T Consensus 377 g~~~~A~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 446 (899)
T TIGR02917 377 GDFEKAAEYLAKATELDPE----------NAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQ 446 (899)
T ss_pred CCHHHHHHHHHHHHhcCCC----------CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCC
Confidence 9999999999999876542 2233444444444444 4
Q ss_pred hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHHHHHHhCCCHHHHHHHHhh
Q 046221 131 FQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFRE 210 (572)
Q Consensus 131 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 210 (572)
+++|.++++.+... .+++..++..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...|++
T Consensus 447 ~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 524 (899)
T TIGR02917 447 FDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEK 524 (899)
T ss_pred HHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44555554444432 22344555666666666666666666666665543 33444555566666666666666666666
Q ss_pred cCC---CCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCccchHHHHHHhcccCChHHHHHHHHHHHHhCCCCCcc
Q 046221 211 MEC---KDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR 287 (572)
Q Consensus 211 ~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 287 (572)
+.. .+..++..+...+...|++++|...+.++...+ +.+...+..+...+...|+++.|..+++.+.+.. +.+..
T Consensus 525 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 602 (899)
T TIGR02917 525 VLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPE 602 (899)
T ss_pred HHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHH
Confidence 543 244556666666666777777777777765542 3344555666677777777777777777776543 44566
Q ss_pred hHHHHHHHHHhcCChhHHHHHHhccCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhc
Q 046221 288 LSNSIIAMYSKCGDLDSSRSVFNQITE---KSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASG 364 (572)
Q Consensus 288 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 364 (572)
.+..+..++.+.|++++|...|+.+.+ .+...+..+..++.+.|++++|...++++. ...+.+..++..+...+.
T Consensus 603 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~l~~~~~ 680 (899)
T TIGR02917 603 AWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRAL--ELKPDNTEAQIGLAQLLL 680 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH--hcCCCCHHHHHHHHHHHH
Confidence 777777777788888888877777653 244567777777777888888888887775 223445667777777778
Q ss_pred ccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc-CCCCCHhHHHHHHHHHHhcCChHHHHHHH
Q 046221 365 ELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFLRDVVSWNTIIYGYGVNGHGETALALY 443 (572)
Q Consensus 365 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 443 (572)
..|+++.|..+++.+.+.. +.+...+..+...+.+.|++++|.+.++.+ ...|+..++..+..++.+.|++++|...+
T Consensus 681 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 759 (899)
T TIGR02917 681 AAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTL 759 (899)
T ss_pred HcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHH
Confidence 8888888888888777665 556667777788888888888888888887 44566677777888888888888888888
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC--CC
Q 046221 444 HKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE--GM 521 (572)
Q Consensus 444 ~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~ 521 (572)
+++.+. .+.+...+..+...|...|++++|.++|+++++.. +++...+..++..+...|+ .+|+.+++++.. +.
T Consensus 760 ~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~ 835 (899)
T TIGR02917 760 EAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA--PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN 835 (899)
T ss_pred HHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC
Confidence 888875 23456778888888888899999999998887544 5667788888888888888 778888888876 44
Q ss_pred ChHHHHHHHHHHhhhcCCHHHHHHHHHHHHhCCCC
Q 046221 522 GPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGII 556 (572)
Q Consensus 522 ~~~~~~~l~~~~~~~~g~~~~A~~~~~~m~~~~~~ 556 (572)
++..+..+...+... |++++|.++++++.+.++.
T Consensus 836 ~~~~~~~~~~~~~~~-g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 836 IPAILDTLGWLLVEK-GEADRALPLLRKAVNIAPE 869 (899)
T ss_pred CcHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCC
Confidence 555666666666666 9999999999999988764
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=1e-24 Score=235.02 Aligned_cols=524 Identities=11% Similarity=0.022 Sum_probs=315.2
Q ss_pred CCcchhhHHHHHhhcCChhhHHHHhccCCC--CChhhH-----------------HHHHHHHhhCCChHHHHHHHHHHHH
Q 046221 4 DPYNSSKLLSNYFKSGKIKEAENLFDEIPE--KNVVSW-----------------SIVIHGYSINGFHEKSMKAFSHMML 64 (572)
Q Consensus 4 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~-----------------~~li~~~~~~~~~~~a~~~~~~m~~ 64 (572)
|+.++..++..+.+.|+.++|.+.++++.+ |+...+ ......+...|++++|+..|+.+.+
T Consensus 61 ~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~ 140 (1157)
T PRK11447 61 NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFN 140 (1157)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHcc
Confidence 566777888899999999999999998876 332221 2223467888999999999999887
Q ss_pred cCCCCCcch-HHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCcccCCCCCCceeHHHHHHHHHhCCChHHHHHHHHHHHh
Q 046221 65 SGLLPNSFT-MVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRG 143 (572)
Q Consensus 65 ~~~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 143 (572)
.+ +|+... ...........|+.++|...++.+.+..+ .+...+..+...+...|+.++|++.++++.+
T Consensus 141 ~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P----------~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~ 209 (1157)
T PRK11447 141 GA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYP----------GNTGLRNTLALLLFSSGRRDEGFAVLEQMAK 209 (1157)
T ss_pred CC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCC----------CCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Confidence 53 444321 11112222356899999999999998875 3455788888999999999999999998765
Q ss_pred CCC------------------C--------------CCHhhHH---------------------HHHHHHhccCChHHHH
Q 046221 144 SGL------------------V--------------PNAVTML---------------------TVIRGCVALGSRALCE 170 (572)
Q Consensus 144 ~~~------------------~--------------p~~~~~~---------------------~ll~~~~~~~~~~~a~ 170 (572)
... . |+..... .....+...|++++|.
T Consensus 210 ~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~ 289 (1157)
T PRK11447 210 SPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAI 289 (1157)
T ss_pred CCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHH
Confidence 321 0 1100000 0122345567888888
Q ss_pred HHHHHHHHhcCCCChhHHhHHHHHHHhCCCHHHHHHHHhhcCC--CCc---ccHH------------HHHHHHHccCCHH
Q 046221 171 LIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC--KDV---ISWT------------RMMGLFVDFEYAG 233 (572)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~---~~~~------------~li~~~~~~~~~~ 233 (572)
..+++.++.. +.+...+..+..++.+.|+.++|+..|++..+ |+. ..|. .....+.+.|+++
T Consensus 290 ~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~ 368 (1157)
T PRK11447 290 PELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLA 368 (1157)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHH
Confidence 8888877754 44667777777888888888888888877654 221 1121 1234566778888
Q ss_pred HHHHHHHHHHhCCCCCCccchHHHHHHhcccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHHHHHHhccC
Q 046221 234 DALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT 313 (572)
Q Consensus 234 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 313 (572)
+|...|++..+.. +.+...+..+...+...|++++|.+.|+++.+.. +.+...+..+...|. .++.++|..+++.+.
T Consensus 369 eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~ 445 (1157)
T PRK11447 369 QAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLS 445 (1157)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCC
Confidence 8888888877753 2334455666677777888888888888877654 233334444444443 334555555555443
Q ss_pred CCC------------cchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHH
Q 046221 314 EKS------------LVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFE 381 (572)
Q Consensus 314 ~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 381 (572)
... ...+..+...+...|++++|+..|++..+. .+-+...+..+...+.+.|++++|...++.+.+
T Consensus 446 ~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~ 523 (1157)
T PRK11447 446 ASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQ 523 (1157)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 211 112333444555667777777777766522 222344555566666677777777777766654
Q ss_pred hcCCCchhHHHHHH--------------------------------------------HHhhhcCChHHHHHHHHHcCCC
Q 046221 382 AGFPRYRSVQNCLI--------------------------------------------SSYSKCGNVDLAYIVFEEMGFL 417 (572)
Q Consensus 382 ~~~~~~~~~~~~l~--------------------------------------------~~~~~~g~~~~A~~~~~~~~~~ 417 (572)
.. +.+...+..+. ..+...|+.++|.++++.- +
T Consensus 524 ~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~--p 600 (1157)
T PRK11447 524 QK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQ--P 600 (1157)
T ss_pred cC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhC--C
Confidence 32 22222222222 3334444555555444421 2
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHH
Q 046221 418 RDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGC 496 (572)
Q Consensus 418 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 496 (572)
.+...+..+...+.+.|++++|+..|++..+. .| +...+..++..+...|++++|++.++.+++.. +.+...+..
T Consensus 601 ~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~--p~~~~~~~~ 676 (1157)
T PRK11447 601 PSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA--NDSLNTQRR 676 (1157)
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--CCChHHHHH
Confidence 23334455566666666677777766666663 34 34566666666666677777776666654322 223344555
Q ss_pred HHHHHHhhCChhHHHHHHHhccC-CC-Ch------HHHHHHHHHHhhhcCCHHHHHHHHHHHHh
Q 046221 497 VVDLLARAGCLSDASGLAGKLLE-GM-GP------NIWRALLSGCVLHVGRFQDAEALRSGSQK 552 (572)
Q Consensus 497 l~~~~~~~g~~~~A~~~~~~~~~-~~-~~------~~~~~l~~~~~~~~g~~~~A~~~~~~m~~ 552 (572)
+..++...|++++|.++++++.. .| ++ ..+..+...+... |++++|++.|++...
T Consensus 677 la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~-G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 677 VALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQT-GQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHh
Confidence 66666666777777776666654 11 11 1233334444444 777777777666654
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=4.4e-23 Score=222.43 Aligned_cols=498 Identities=11% Similarity=-0.004 Sum_probs=327.9
Q ss_pred hHHHHHhhcCChhhHHHHhccCCCCChhhHH----HHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHcCCC
Q 046221 10 KLLSNYFKSGKIKEAENLFDEIPEKNVVSWS----IVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQ 85 (572)
Q Consensus 10 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 85 (572)
.+...+.+.|++++|+..|+.+.+.++.... .........|+.++|++.|+++.+.. +-+...+..+...+...|
T Consensus 117 ~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g 195 (1157)
T PRK11447 117 QQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSG 195 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccC
Confidence 3455788999999999999998763222211 11111234589999999999999874 445556777888888999
Q ss_pred ChHHHHHHHHHHHHhcCCCCc--------ccCCC---------------CCCce-------------------eH--HHH
Q 046221 86 NLELARSIHGLMVKFGLESDL--------FEGLK---------------NPYLV-------------------SC--NAI 121 (572)
Q Consensus 86 ~~~~a~~~~~~~~~~~~~~~~--------~~~~~---------------~~~~~-------------------~~--~~l 121 (572)
+.++|...++++.+....... ....+ .|+.. .+ ...
T Consensus 196 ~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~ 275 (1157)
T PRK11447 196 RRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQ 275 (1157)
T ss_pred CHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHH
Confidence 999999999988653211000 00000 01100 01 122
Q ss_pred HHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCC-ChhHH------------
Q 046221 122 VAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLIL-DVSVN------------ 188 (572)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~------------ 188 (572)
...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|...|++.++..... ....+
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 455678899999999999998853 2367788889999999999999999999998865322 11112
Q ss_pred hHHHHHHHhCCCHHHHHHHHhhcCC---CCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-ccchHHHHHHhccc
Q 046221 189 NSVLDMYSCLMDLDAAIQIFREMEC---KDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICD-TVALLNLISVNAIL 264 (572)
Q Consensus 189 ~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~ 264 (572)
......+.+.|++++|+..|++... .+...+..+...+...|++++|.+.|++..+.. |+ ...+..+...+. .
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH-h
Confidence 1224567789999999999998876 355677788999999999999999999998753 33 333333333332 2
Q ss_pred CChHHHHHHHHHHHHhCC--------CCCcchHHHHHHHHHhcCChhHHHHHHhccCC--C-CcchHHHHHHHHHHcCCh
Q 046221 265 GDLKRGKQLHAQVVLGGL--------QSELRLSNSIIAMYSKCGDLDSSRSVFNQITE--K-SLVSWTAIISGYVQNGCA 333 (572)
Q Consensus 265 ~~~~~a~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~ 333 (572)
++.++|..+++.+..... ......+..+...+...|++++|.+.|++..+ | +...+..+...|.+.|++
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 344445444433221100 00011222334444445555555555554432 1 222334444445555555
Q ss_pred HHHHHHHHHHHhcCCCCC---------------------------------CHhH---------HHHHHHHhcccccHHH
Q 046221 334 REALNQFIKMRQEKTDSV---------------------------------DSIT---------LVSILTASGELAALEI 371 (572)
Q Consensus 334 ~~a~~~~~~~~~~~~~~~---------------------------------~~~~---------~~~ll~~~~~~~~~~~ 371 (572)
++|...++++....+..| +... +......+...|+.++
T Consensus 512 ~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 512 SQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 555555555432221111 1110 1122334555666666
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc-CCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 046221 372 CLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFLR-DVVSWNTIIYGYGVNGHGETALALYHKMTET 449 (572)
Q Consensus 372 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 449 (572)
|..+++ ..+.+...+..+...+.+.|++++|+..|++. ...| +...+..++..|...|++++|+..++...+
T Consensus 592 A~~~l~-----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~- 665 (1157)
T PRK11447 592 AEALLR-----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA- 665 (1157)
T ss_pred HHHHHH-----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc-
Confidence 666655 23556677788999999999999999999998 3334 578889999999999999999999998887
Q ss_pred CCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC----ChhHHHHHHHHHHhhCChhHHHHHHHhccC
Q 046221 450 GEVPD-SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKP----SQEHYGCVVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 450 g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
..|+ ..++..+..++...|++++|.++++++++...-.| +...+..+...+...|++++|++.++++..
T Consensus 666 -~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 666 -TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred -cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4554 46677788899999999999999999975432222 224666778899999999999999999874
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=2e-21 Score=199.98 Aligned_cols=507 Identities=10% Similarity=0.013 Sum_probs=308.4
Q ss_pred hcCChhhHHHHhccCCC---CChhhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHcCCCChHHHHHH
Q 046221 17 KSGKIKEAENLFDEIPE---KNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSI 93 (572)
Q Consensus 17 ~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 93 (572)
..|++++|+..|+...+ .++.++..+...|.+.|++++|+..+++..+. .|+...|..++..+ ++.++|..+
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~~ 130 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVTT 130 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHHH
Confidence 44899999999998875 34677888889999999999999999998876 55555555555444 888899999
Q ss_pred HHHHHHhcCCCCcccCCCCCCceeHHHHHHH--------HHhCCChHHHHHHHHHHHhCCCCCCHhhHHHH-HHHHhccC
Q 046221 94 HGLMVKFGLESDLFEGLKNPYLVSCNAIVAG--------FINNKLFQQAVLLFNFFRGSGLVPNAVTMLTV-IRGCVALG 164 (572)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-l~~~~~~~ 164 (572)
++++....+.. ...+..+... |.+. ++|.+.++ .+.....|+..+.... .+.|.+.|
T Consensus 131 ye~l~~~~P~n----------~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~ 196 (987)
T PRK09782 131 VEELLAQQKAC----------DAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLK 196 (987)
T ss_pred HHHHHHhCCCC----------hhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHh
Confidence 99998887642 2333333333 3333 44444443 3333233334433333 66666677
Q ss_pred ChHHHHHHHHHHHHhcCCCChhHHhHHHHHHHh-CCCHHHHHHHHhhcCCCCcccHHHHHHHHHccCCHHHHHHHHHHHH
Q 046221 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSC-LMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMR 243 (572)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 243 (572)
+++.+..++.++.+.+ +.+......|..+|.. .++ +.+..+++.....++..+..++..|.+.|+.++|..+++++.
T Consensus 197 dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~ 274 (987)
T PRK09782 197 QWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENK 274 (987)
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 7777777777776665 3334444555555555 244 666666554333455666666666666666666666666654
Q ss_pred hCCCC-CCccchHHH------------------------------HHHh-------------------------------
Q 046221 244 KSRII-CDTVALLNL------------------------------ISVN------------------------------- 261 (572)
Q Consensus 244 ~~~~~-p~~~~~~~l------------------------------l~~~------------------------------- 261 (572)
..... |+..++.-+ +..+
T Consensus 275 ~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 354 (987)
T PRK09782 275 PLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVA 354 (987)
T ss_pred ccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccc
Confidence 32111 111111100 1111
Q ss_pred --------------------------------cccCChHHHHHHHHHHHHh-C-CCCCcchHHHHHHHHHhcCC---hhH
Q 046221 262 --------------------------------AILGDLKRGKQLHAQVVLG-G-LQSELRLSNSIIAMYSKCGD---LDS 304 (572)
Q Consensus 262 --------------------------------~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~---~~~ 304 (572)
...|+.++|.++++..... + -..+.....-++..|.+.+. ..+
T Consensus 355 ~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 434 (987)
T PRK09782 355 TRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK 434 (987)
T ss_pred cCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence 1223333333333333321 0 01122233345555555544 222
Q ss_pred HHHHHh-------------------------ccCC---C--CcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHh
Q 046221 305 SRSVFN-------------------------QITE---K--SLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSI 354 (572)
Q Consensus 305 a~~~~~-------------------------~~~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 354 (572)
+..+-. .... + +...|..+..++.. ++.++|+..+.+..... |+..
T Consensus 435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~---Pd~~ 510 (987)
T PRK09782 435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ---PDAW 510 (987)
T ss_pred HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC---CchH
Confidence 222211 1110 1 23345555555555 67777777666665232 4444
Q ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc-CCCCC-HhHHHHHHHHHHh
Q 046221 355 TLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFLRD-VVSWNTIIYGYGV 432 (572)
Q Consensus 355 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~ 432 (572)
....+...+...|+++.|...++.+... +|+...+..+..++.+.|++++|...+++. ...|+ ...+..+......
T Consensus 511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~ 588 (987)
T PRK09782 511 QHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYI 588 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 4444445556788888888888876443 344444556667778888888888888877 33333 2333333344455
Q ss_pred cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHH
Q 046221 433 NGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASG 512 (572)
Q Consensus 433 ~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 512 (572)
.|++++|...+++..+ +.|+...+..+..++.+.|++++|+..++++++.. +.+...+..+..++...|++++|++
T Consensus 589 ~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~--Pd~~~a~~nLG~aL~~~G~~eeAi~ 664 (987)
T PRK09782 589 PGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALELE--PNNSNYQAALGYALWDSGDIAQSRE 664 (987)
T ss_pred CCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 6888888888888887 56777788888888888899999998888887543 4455577788888888889999988
Q ss_pred HHHhccC--CCChHHHHHHHHHHhhhcCCHHHHHHHHHHHHhCCC
Q 046221 513 LAGKLLE--GMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGI 555 (572)
Q Consensus 513 ~~~~~~~--~~~~~~~~~l~~~~~~~~g~~~~A~~~~~~m~~~~~ 555 (572)
.++++.+ +.++..+..+...+... |++++|+..+++..+..+
T Consensus 665 ~l~~AL~l~P~~~~a~~nLA~al~~l-Gd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 665 MLERAHKGLPDDPALIRQLAYVNQRL-DDMAATQHYARLVIDDID 708 (987)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCC
Confidence 8888877 44455677777777666 899999988888876554
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.92 E-value=8e-20 Score=188.27 Aligned_cols=524 Identities=11% Similarity=-0.020 Sum_probs=356.7
Q ss_pred CcchhhHHHHHhhcCChhhHHHHhccCCC--CChhhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHH-
Q 046221 5 PYNSSKLLSNYFKSGKIKEAENLFDEIPE--KNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAA- 81 (572)
Q Consensus 5 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~- 81 (572)
+.++..|...|.+.|++++|+..+++..+ |+-..|..++..+ +++++|..+++++.+.. +-+...+..+....
T Consensus 78 ~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~ 153 (987)
T PRK09782 78 IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEV 153 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHHHHHhC-CCChhHHHHHHHHhh
Confidence 56778899999999999999999999886 3323333333333 89999999999999873 33344454444440
Q ss_pred ----cCCCChHHHHHHHHHHHHhcCCCCcccCCCCCCceeHHHH-HHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHH
Q 046221 82 ----AGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAI-VAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTV 156 (572)
Q Consensus 82 ----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 156 (572)
....+.++|.+.++ .....+ .|+..+.... ...|.+.|++++|+++++++.+.+.. +..-...+
T Consensus 154 ~~~~l~y~q~eqAl~AL~-lr~~~~---------~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L 222 (987)
T PRK09782 154 GQNALRLAQLPVARAQLN-DATFAA---------SPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQW 222 (987)
T ss_pred ccchhhhhhHHHHHHHHH-HhhhCC---------CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHH
Confidence 12234466666666 332222 2344444444 89999999999999999999998633 34445556
Q ss_pred HHHHhc-cCChHHHHHHHHHHHHhcCCCChhHHhHHHHHHHhCCCHHHHHHHHhhcCC-----CCccc------------
Q 046221 157 IRGCVA-LGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC-----KDVIS------------ 218 (572)
Q Consensus 157 l~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~------------ 218 (572)
-.++.. .++ +.+..+++. .+..+...+..+...|.+.|+.++|.++++++.. |+..+
T Consensus 223 ~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~ 297 (987)
T PRK09782 223 FDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANP 297 (987)
T ss_pred HHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCch
Confidence 566666 355 666666442 3446788888999999999999999998888763 10000
Q ss_pred ------------------HHHHHHH-------------------------------------------------------
Q 046221 219 ------------------WTRMMGL------------------------------------------------------- 225 (572)
Q Consensus 219 ------------------~~~li~~------------------------------------------------------- 225 (572)
.-.++..
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 377 (987)
T PRK09782 298 VQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLT 377 (987)
T ss_pred hhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHH
Confidence 0000111
Q ss_pred --------HHccCCHHHHHHHHHHHHhC-C-CCCCccchHHHHHHhcccCC---hHHHHHH-------------------
Q 046221 226 --------FVDFEYAGDALKIFREMRKS-R-IICDTVALLNLISVNAILGD---LKRGKQL------------------- 273 (572)
Q Consensus 226 --------~~~~~~~~~a~~~~~~m~~~-~-~~p~~~~~~~ll~~~~~~~~---~~~a~~~------------------- 273 (572)
.++.|+.++|.++|+..... + -.++.....-++..+.+.+. ..++..+
T Consensus 378 ~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 457 (987)
T PRK09782 378 RLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGI 457 (987)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhh
Confidence 12344455555555555441 1 11122223355556655544 2222222
Q ss_pred ---HHHHHHh-CC-CC--CcchHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHH--HHHHHHcCChHHHHHHHHHHH
Q 046221 274 ---HAQVVLG-GL-QS--ELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAI--ISGYVQNGCAREALNQFIKMR 344 (572)
Q Consensus 274 ---~~~~~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~ 344 (572)
+...... +. ++ +...+..+..++.. ++.++|...+.+.....+..+..+ ...+...|++++|...|+++.
T Consensus 458 ~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~ 536 (987)
T PRK09782 458 ADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKIS 536 (987)
T ss_pred hhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 2222211 11 23 55667777777776 888889997777654333344444 344468999999999999985
Q ss_pred hcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc-CCCCCHhHH
Q 046221 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFLRDVVSW 423 (572)
Q Consensus 345 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~ 423 (572)
.. +|+...+..+...+.+.|+.+.|...++...+.. +.....+..+.....+.|++++|...+++. ...|+...|
T Consensus 537 -~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~ 612 (987)
T PRK09782 537 -LH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAY 612 (987)
T ss_pred -cc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHH
Confidence 32 3444455666778889999999999999998765 334444444444555669999999999998 666888899
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 046221 424 NTIIYGYGVNGHGETALALYHKMTETGEVPD-SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLA 502 (572)
Q Consensus 424 ~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 502 (572)
..+...+.+.|++++|+..|++..+ ..|+ ...+..+..++...|++++|+..++++++.. |-+...+..+..++.
T Consensus 613 ~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~--P~~~~a~~nLA~al~ 688 (987)
T PRK09782 613 VARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL--PDDPALIRQLAYVNQ 688 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 9999999999999999999999999 5675 4778888889999999999999999998654 456678999999999
Q ss_pred hhCChhHHHHHHHhccC-CCChHHHH-HHHHHHhhhcCCHHHHHHHHHHHHhCCCCCC
Q 046221 503 RAGCLSDASGLAGKLLE-GMGPNIWR-ALLSGCVLHVGRFQDAEALRSGSQKKGIIKI 558 (572)
Q Consensus 503 ~~g~~~~A~~~~~~~~~-~~~~~~~~-~l~~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 558 (572)
..|++++|+..+++..+ .|+..... ......... .+++.|.+-+++...-++...
T Consensus 689 ~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~-~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 689 RLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQR-FNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHH-HHHHHHHHHHHHHhhcCccch
Confidence 99999999999999987 66554333 233333333 778888888887766665543
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=3.3e-21 Score=176.53 Aligned_cols=380 Identities=14% Similarity=0.119 Sum_probs=234.4
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHHHHHHhCCCHHHHHHHHhhcCCCCc--ccH-HHHHHHHH
Q 046221 151 VTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV--ISW-TRMMGLFV 227 (572)
Q Consensus 151 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~-~~li~~~~ 227 (572)
.+|..+.+.+-..|+++.|..+++.+++.. +.....|..+..++...|+.+.|.+.|.+..+-|+ ... +.+...+-
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlk 195 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLK 195 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHH
Confidence 344444444444444444444444444432 22334444444444444444444444444443222 111 11222223
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCccchHHHHHHhcccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHHHH
Q 046221 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRS 307 (572)
Q Consensus 228 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 307 (572)
..|+.++|...|.+..+.. +--...|+.|-..+-..|+...|++-|++.++.+ +.-...|-.|...|...+.++.|..
T Consensus 196 a~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs 273 (966)
T KOG4626|consen 196 AEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVS 273 (966)
T ss_pred hhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHH
Confidence 3455555555555444431 1112344444444555555555555555555433 1122344455556666666666666
Q ss_pred HHhccCC--C-CcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcC
Q 046221 308 VFNQITE--K-SLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGF 384 (572)
Q Consensus 308 ~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 384 (572)
.|.+... | ..+.+..+...|...|+.+-|+..+++..+..+. =+..|+.+..++-..|++.+|.+.+.......
T Consensus 274 ~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~--F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~- 350 (966)
T KOG4626|consen 274 CYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN--FPDAYNNLANALKDKGSVTEAVDCYNKALRLC- 350 (966)
T ss_pred HHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC--chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-
Confidence 6555432 2 2345555555566666666666666666422222 23456666666666666666666666666554
Q ss_pred CCchhHHHHHHHHhhhcCChHHHHHHHHHc-CCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH-HHHHHH
Q 046221 385 PRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFLRD-VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS-STYLSI 461 (572)
Q Consensus 385 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~-~~~~~l 461 (572)
+......+.|...|...|.+++|.++|... .+.|. ...++.|...|.++|++++|+..|++.++ +.|+. ..|+.+
T Consensus 351 p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~Nm 428 (966)
T KOG4626|consen 351 PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNM 428 (966)
T ss_pred CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhc
Confidence 334556677899999999999999999988 55565 56789999999999999999999999998 89987 889999
Q ss_pred HHHHhccCChHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhhCChhHHHHHHHhccC-CCC-hHHHHHHHHHHhhhcC
Q 046221 462 LNACGHAGLTNDGLVIFNQMIEENKVKPS-QEHYGCVVDLLARAGCLSDASGLAGKLLE-GMG-PNIWRALLSGCVLHVG 538 (572)
Q Consensus 462 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~~g 538 (572)
...|-..|+.+.|++.+.+++.- .|. ...++.|...|...|++.+|++-+++... +|| +..|..++.....- .
T Consensus 429 Gnt~ke~g~v~~A~q~y~rAI~~---nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~v-c 504 (966)
T KOG4626|consen 429 GNTYKEMGDVSAAIQCYTRAIQI---NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIV-C 504 (966)
T ss_pred chHHHHhhhHHHHHHHHHHHHhc---CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHH-h
Confidence 99999999999999999999853 344 45889999999999999999999999887 554 55677666654333 4
Q ss_pred CHHH
Q 046221 539 RFQD 542 (572)
Q Consensus 539 ~~~~ 542 (572)
+|.+
T Consensus 505 dw~D 508 (966)
T KOG4626|consen 505 DWTD 508 (966)
T ss_pred cccc
Confidence 4443
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=7.4e-21 Score=183.39 Aligned_cols=304 Identities=15% Similarity=0.124 Sum_probs=206.6
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCccchHHHHHHhcccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCCh
Q 046221 223 MGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDL 302 (572)
Q Consensus 223 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 302 (572)
...+...|++++|...|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++..
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~--------------- 105 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQ--------------- 105 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHH---------------
Confidence 334455666666777766666542 1223345555555555566666665555555432111100
Q ss_pred hHHHHHHhccCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHh
Q 046221 303 DSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEA 382 (572)
Q Consensus 303 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 382 (572)
....+..+...|.+.|++++|..+|+++. . ..+.+..++..+...+...|++++|.+.++.+.+.
T Consensus 106 -------------~~~~~~~La~~~~~~g~~~~A~~~~~~~l-~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 170 (389)
T PRK11788 106 -------------RLLALQELGQDYLKAGLLDRAEELFLQLV-D-EGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKL 170 (389)
T ss_pred -------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHH-c-CCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHh
Confidence 00123444455555555555555555553 1 12233445555555555555555555555555544
Q ss_pred cCCCc----hhHHHHHHHHhhhcCChHHHHHHHHHc-CCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--
Q 046221 383 GFPRY----RSVQNCLISSYSKCGNVDLAYIVFEEM-GFLR-DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD-- 454 (572)
Q Consensus 383 ~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~-- 454 (572)
+..+. ...+..+...+.+.|++++|...++++ ...| +...+..+...|.+.|++++|.++++++.+. .|+
T Consensus 171 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~ 248 (389)
T PRK11788 171 GGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ--DPEYL 248 (389)
T ss_pred cCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--ChhhH
Confidence 32221 123455777888999999999999998 3334 4567788889999999999999999999985 444
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC-CCChHHHHHHHHHH
Q 046221 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE-GMGPNIWRALLSGC 533 (572)
Q Consensus 455 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~ 533 (572)
..++..++.+|...|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++.. .|+...++.++...
T Consensus 249 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~ 325 (389)
T PRK11788 249 SEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYH 325 (389)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHh
Confidence 366888999999999999999999999754 46777778899999999999999999999877 78888888887776
Q ss_pred hh-h-cCCHHHHHHHHHHHHhCCCCCCCcee
Q 046221 534 VL-H-VGRFQDAEALRSGSQKKGIIKIPGIS 562 (572)
Q Consensus 534 ~~-~-~g~~~~A~~~~~~m~~~~~~~~~~~~ 562 (572)
.. . .|+.++++.++++|.+++++++|.+.
T Consensus 326 ~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~ 356 (389)
T PRK11788 326 LAEAEEGRAKESLLLLRDLVGEQLKRKPRYR 356 (389)
T ss_pred hhccCCccchhHHHHHHHHHHHHHhCCCCEE
Confidence 53 2 26999999999999999999999854
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=2.6e-20 Score=170.77 Aligned_cols=424 Identities=13% Similarity=0.087 Sum_probs=338.5
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHHHHHHhC
Q 046221 119 NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCL 198 (572)
Q Consensus 119 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (572)
..|..-..+.|++++|.+.-...-..+ ..+..+.-.+-..+.+..+.+...+.-....+.. +.-..+|..+.+.+-..
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHh
Confidence 345556678899999998877665542 1122233233334555556665544444434332 44567899999999999
Q ss_pred CCHHHHHHHHhhcCC---CCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCccchHH-HHHHhcccCChHHHHHHH
Q 046221 199 MDLDAAIQIFREMEC---KDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLN-LISVNAILGDLKRGKQLH 274 (572)
Q Consensus 199 ~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~~~~~a~~~~ 274 (572)
|++++|+.+++.+.+ ..+..|..+..++...|+.+.|...|.+..+. .|+.....+ +-..+...|++.+|...|
T Consensus 130 g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHH
Confidence 999999999999876 35688999999999999999999999998874 566554333 333445578999999999
Q ss_pred HHHHHhCCCCCcchHHHHHHHHHhcCChhHHHHHHhccCCCCc---chHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 046221 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSL---VSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV 351 (572)
Q Consensus 275 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 351 (572)
.+.+... +.-...|+.|...+-..|++..|+..|++...-|+ ..|-.|...|...+.+++|+..+.+.. .-.+-
T Consensus 208 lkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl--~lrpn 284 (966)
T KOG4626|consen 208 LKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRAL--NLRPN 284 (966)
T ss_pred HHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHH--hcCCc
Confidence 8888765 34456788899899999999999999999886444 578889999999999999999999885 22333
Q ss_pred CHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc-CCCC-CHhHHHHHHHH
Q 046221 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFLR-DVVSWNTIIYG 429 (572)
Q Consensus 352 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~ 429 (572)
....+..+...|..+|.++.|+..+++..+.. +.-+..|+.|..++-..|++.+|+..+.+. ...| ...+.+.|...
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni 363 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNI 363 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 45677788888899999999999999998764 445788999999999999999999999998 4444 47789999999
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChh-HHHHHHHHHHhhCCh
Q 046221 430 YGVNGHGETALALYHKMTETGEVPDS-STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQE-HYGCVVDLLARAGCL 507 (572)
Q Consensus 430 ~~~~~~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~ 507 (572)
|...|.++.|..+|....+ +.|.. ..++.|...|-.+|++++|+..++++++ +.|+.. .|+.+...|-..|+.
T Consensus 364 ~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHHHhhhH
Confidence 9999999999999999998 78876 7899999999999999999999999985 567754 899999999999999
Q ss_pred hHHHHHHHhccC-CCC-hHHHHHHHHHHhhhcCCHHHHHHHHHHHHhCCCC
Q 046221 508 SDASGLAGKLLE-GMG-PNIWRALLSGCVLHVGRFQDAEALRSGSQKKGII 556 (572)
Q Consensus 508 ~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~~g~~~~A~~~~~~m~~~~~~ 556 (572)
..|.+.+.++.. .|. ....+.|...+... |+..+|++-++...+..+.
T Consensus 439 ~~A~q~y~rAI~~nPt~AeAhsNLasi~kDs-Gni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 439 SAAIQCYTRAIQINPTFAEAHSNLASIYKDS-GNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred HHHHHHHHHHHhcCcHHHHHHhhHHHHhhcc-CCcHHHHHHHHHHHccCCC
Confidence 999999999987 554 34577777777766 9999999999998776654
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.88 E-value=3.3e-18 Score=165.25 Aligned_cols=529 Identities=11% Similarity=0.052 Sum_probs=351.0
Q ss_pred HHHhhcCChhhHHHHhccCCCCChhhHHHHHHH------HhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHcCCCC
Q 046221 13 SNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHG------YSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQN 86 (572)
Q Consensus 13 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~------~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 86 (572)
..+.+.|+.+.|+..|++..+.|+.+-++++.. +.....+..++.++...-..+ +-++...+.|-.-|.-.|+
T Consensus 207 ~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~d 285 (1018)
T KOG2002|consen 207 HCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKD 285 (1018)
T ss_pred hHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhccc
Confidence 444566777777777777766555444444321 111234455566665554433 4556667777777778888
Q ss_pred hHHHHHHHHHHHHhcCCCCcccCCCCCCceeHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCH--hhHHHHHHHHhccC
Q 046221 87 LELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNA--VTMLTVIRGCVALG 164 (572)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~ 164 (572)
++.+..+...+........ --..+|..+.++|-..|++++|...|.+-.+. .|+. ..+.-+.+.+.+.|
T Consensus 286 y~~v~~la~~ai~~t~~~~-------~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~ 356 (1018)
T KOG2002|consen 286 YERVWHLAEHAIKNTENKS-------IKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRG 356 (1018)
T ss_pred HHHHHHHHHHHHHhhhhhH-------HHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhc
Confidence 8888888887776553111 11235777888888888888888888777664 3333 34455667788888
Q ss_pred ChHHHHHHHHHHHHhcCCCChhHHhHHHHHHHhCC----CHHHHHHHHhhcCCC---CcccHHHHHHHHHccCCHHHHHH
Q 046221 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLM----DLDAAIQIFREMECK---DVISWTRMMGLFVDFEYAGDALK 237 (572)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~ 237 (572)
+++.+...|+...+.. +.+..+...|...|+..+ ..+.|..++.+...+ |...|-.+...+-... +..++.
T Consensus 357 dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d-~~~sL~ 434 (1018)
T KOG2002|consen 357 DLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTD-PWASLD 434 (1018)
T ss_pred hHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcC-hHHHHH
Confidence 8888888888887764 455566666666666654 456677777666553 4556666665555443 333365
Q ss_pred HHHHH----HhCCCCCCccchHHHHHHhcccCChHHHHHHHHHHHHh---CCCCCcc------hHHHHHHHHHhcCChhH
Q 046221 238 IFREM----RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG---GLQSELR------LSNSIIAMYSKCGDLDS 304 (572)
Q Consensus 238 ~~~~m----~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~------~~~~l~~~~~~~~~~~~ 304 (572)
.|... ...+-.+.+...+.+...+...|++..|...+...... ...++.. +--.+..++-..++.+.
T Consensus 435 ~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~ 514 (1018)
T KOG2002|consen 435 AYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEV 514 (1018)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhH
Confidence 55443 34454566777888888888888888888888887765 1223321 22335566666778888
Q ss_pred HHHHHhccCCCCc---chHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHH
Q 046221 305 SRSVFNQITEKSL---VSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFE 381 (572)
Q Consensus 305 a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 381 (572)
|.+.|..+.+..+ ..|-.+.......+...+|...+..........|+..++. ...+.....+..|..-|..+.+
T Consensus 515 A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~--G~~~l~k~~~~~a~k~f~~i~~ 592 (1018)
T KOG2002|consen 515 AEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLL--GNLHLKKSEWKPAKKKFETILK 592 (1018)
T ss_pred HHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHH--HHHHHhhhhhcccccHHHHHHh
Confidence 8888888875332 2333333222334677888888888865556666665543 3345555556666665555544
Q ss_pred hcC-CCchhHHHHHHHHhhh------------cCChHHHHHHHHHc--CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 046221 382 AGF-PRYRSVQNCLISSYSK------------CGNVDLAYIVFEEM--GFLRDVVSWNTIIYGYGVNGHGETALALYHKM 446 (572)
Q Consensus 382 ~~~-~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 446 (572)
... .+|+...-+|.+.|.. .+..++|+++|.+. ..+.+...-|.+.-.++..|++..|..+|.+.
T Consensus 593 ~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqV 672 (1018)
T KOG2002|consen 593 KTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQV 672 (1018)
T ss_pred hhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHH
Confidence 322 2455555555554432 24577888888877 44456777788888899999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC-CCChHH
Q 046221 447 TETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE-GMGPNI 525 (572)
Q Consensus 447 ~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~ 525 (572)
++.. .-...+|..+..+|...|++-.|++.|+..+++..-.-+..+...|..++.+.|.+.+|.+.+..+.. .|...+
T Consensus 673 rEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~ 751 (1018)
T KOG2002|consen 673 REAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTS 751 (1018)
T ss_pred HHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccch
Confidence 9974 33556788899999999999999999999998887677888999999999999999999999888776 443332
Q ss_pred --HHHHHHHHhhh-----------------cCCHHHHHHHHHHHHhCCCC
Q 046221 526 --WRALLSGCVLH-----------------VGRFQDAEALRSGSQKKGII 556 (572)
Q Consensus 526 --~~~l~~~~~~~-----------------~g~~~~A~~~~~~m~~~~~~ 556 (572)
+|..+...... .+..++|.++|..|...+-+
T Consensus 752 v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 752 VKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33322211100 56778889999999887765
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=6.5e-18 Score=171.36 Aligned_cols=421 Identities=11% Similarity=-0.042 Sum_probs=221.7
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCcccCCCCCCceeH
Q 046221 39 WSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSC 118 (572)
Q Consensus 39 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (572)
+......+.+.|++++|+..|++..+. .|+...|..+..++.+.|++++|...++..++..+ .+...|
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p----------~~~~a~ 197 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP----------DYSKAL 197 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC----------CCHHHH
Confidence 445566777888888888888887754 56667777777778888888888888888777654 345577
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHHHHHHhC
Q 046221 119 NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCL 198 (572)
Q Consensus 119 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (572)
..+..++...|++++|+..|......+.. +......++..... ..+........+.. +++...+..+.. +...
T Consensus 198 ~~~a~a~~~lg~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~ 270 (615)
T TIGR00990 198 NRRANAYDGLGKYADALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQS 270 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHH
Confidence 77788888888888888777665543211 11111111111111 11122222222211 111122221111 1111
Q ss_pred CCHHHHHHHHhhcCCCCc---ccHHHHHHHH---HccCCHHHHHHHHHHHHhCC-CCCCccchHHHHHHhcccCChHHHH
Q 046221 199 MDLDAAIQIFREMECKDV---ISWTRMMGLF---VDFEYAGDALKIFREMRKSR-IICDTVALLNLISVNAILGDLKRGK 271 (572)
Q Consensus 199 ~~~~~a~~~~~~~~~~~~---~~~~~li~~~---~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~ 271 (572)
........-+....+.+. ..+..+...+ ...+++++|.+.|+...+.+ ..|
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~---------------------- 328 (615)
T TIGR00990 271 FRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGE---------------------- 328 (615)
T ss_pred ccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCCh----------------------
Confidence 111111111111101000 0111111000 11234444555444444332 111
Q ss_pred HHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHHHHHHhccCC--CC-cchHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 046221 272 QLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE--KS-LVSWTAIISGYVQNGCAREALNQFIKMRQEKT 348 (572)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 348 (572)
.....+..+...+...|++++|...|+...+ |+ ...|..+...+...|++++|...|++..+.
T Consensus 329 ------------~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-- 394 (615)
T TIGR00990 329 ------------KEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL-- 394 (615)
T ss_pred ------------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence 1223344444555555555555555555443 21 234455555555666666666666655422
Q ss_pred CCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc-CCCC-CHhHHHHH
Q 046221 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFLR-DVVSWNTI 426 (572)
Q Consensus 349 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l 426 (572)
.+.+...+..+...+...|+++.|...++...+.. +.+...+..+..++.+.|++++|+..|++. ...| +...|+.+
T Consensus 395 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~l 473 (615)
T TIGR00990 395 NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYY 473 (615)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 22334455555555666666666666666655543 334455556666777777777777777766 3223 35667777
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCH--------HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 046221 427 IYGYGVNGHGETALALYHKMTETGEVPDS--------STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVV 498 (572)
Q Consensus 427 ~~~~~~~~~~~~A~~~~~~~~~~g~~p~~--------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 498 (572)
...+...|++++|+..|++..+. .|+. ..+......+...|++++|.++++++++.. +.+...+..++
T Consensus 474 g~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~--p~~~~a~~~la 549 (615)
T TIGR00990 474 GELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID--PECDIAVATMA 549 (615)
T ss_pred HHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCcHHHHHHHH
Confidence 77777777777777777777663 3321 111112222334577777777777776432 22333566777
Q ss_pred HHHHhhCChhHHHHHHHhccC
Q 046221 499 DLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 499 ~~~~~~g~~~~A~~~~~~~~~ 519 (572)
.++.+.|++++|.++|+++.+
T Consensus 550 ~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 550 QLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHccCHHHHHHHHHHHHH
Confidence 777777777777777777655
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=1.7e-17 Score=168.34 Aligned_cols=420 Identities=12% Similarity=-0.011 Sum_probs=290.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHHHHHHh
Q 046221 118 CNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSC 197 (572)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 197 (572)
+......+.+.|++++|++.|++..+ +.|+...|..+..++...|++++|...+...++.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 44567788899999999999999887 46788888888899999999999999999988864 4556788889999999
Q ss_pred CCCHHHHHHHHhhcCCCC---cccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCccchHHHHHHhcccCChHHHHHHH
Q 046221 198 LMDLDAAIQIFREMECKD---VISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274 (572)
Q Consensus 198 ~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 274 (572)
.|++++|+..|......+ ......++..+.. ..+........+. .+++...+..+.. +...........-+
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILET-KPENLPSVTFVGN-YLQSFRPKPRPAGL 280 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhc-CCCCCCCHHHHHH-HHHHccCCcchhhh
Confidence 999999998876554311 1111111211111 1222223333222 1222222222221 21111111111111
Q ss_pred HHHHHhCCCCCc-chHHHHHHH---HHhcCChhHHHHHHhccCCC------CcchHHHHHHHHHHcCChHHHHHHHHHHH
Q 046221 275 AQVVLGGLQSEL-RLSNSIIAM---YSKCGDLDSSRSVFNQITEK------SLVSWTAIISGYVQNGCAREALNQFIKMR 344 (572)
Q Consensus 275 ~~~~~~~~~~~~-~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 344 (572)
..... ..+.. ..+..+... ....+++++|.+.|+...+. ....|..+...+...|++++|+..+++..
T Consensus 281 ~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal 358 (615)
T TIGR00990 281 EDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI 358 (615)
T ss_pred hcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11111 11111 111111111 12346899999999887642 23467788888999999999999999986
Q ss_pred hcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc-CCCC-CHhH
Q 046221 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFLR-DVVS 422 (572)
Q Consensus 345 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~ 422 (572)
.. .+-....+..+...+...|+++.|...++.+.+.. +.+...+..+...+...|++++|...|++. ...| +...
T Consensus 359 ~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~ 435 (615)
T TIGR00990 359 EL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFS 435 (615)
T ss_pred Hc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHH
Confidence 32 23345677888888899999999999999988764 556788899999999999999999999998 4445 4677
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCC-CC---Chh-HHHH
Q 046221 423 WNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKV-KP---SQE-HYGC 496 (572)
Q Consensus 423 ~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~---~~~-~~~~ 496 (572)
+..+...+.+.|++++|+..|++..+. .| +...+..+...+...|++++|+..|+++++...- .+ +.. .++.
T Consensus 436 ~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~ 513 (615)
T TIGR00990 436 HIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINK 513 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHH
Confidence 788888999999999999999999884 56 4588999999999999999999999998754311 01 111 2222
Q ss_pred HHHHHHhhCChhHHHHHHHhccC-CCCh-HHHHHHHHHHhhhcCCHHHHHHHHHHHHhCC
Q 046221 497 VVDLLARAGCLSDASGLAGKLLE-GMGP-NIWRALLSGCVLHVGRFQDAEALRSGSQKKG 554 (572)
Q Consensus 497 l~~~~~~~g~~~~A~~~~~~~~~-~~~~-~~~~~l~~~~~~~~g~~~~A~~~~~~m~~~~ 554 (572)
....+...|++++|.++++++.. .|+. ..+..+...+... |++++|+..|++..+..
T Consensus 514 a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~-g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 514 ALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQ-GDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHh
Confidence 33344457999999999999876 4444 4577777777776 99999999999986543
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=2e-19 Score=173.47 Aligned_cols=300 Identities=11% Similarity=0.057 Sum_probs=150.3
Q ss_pred HHhccCChHHHHHHHHHHHHhcCCCChhHHhHHHHHHHhCCCHHHHHHHHhhcCCC-C------cccHHHHHHHHHccCC
Q 046221 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK-D------VISWTRMMGLFVDFEY 231 (572)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~------~~~~~~li~~~~~~~~ 231 (572)
.+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+... + ...+..+...|...|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3455566777777777776653 334455666666666666666666666655431 1 1234555566666666
Q ss_pred HHHHHHHHHHHHhCCCCCCccchHHHHHHhcccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHHHHHHhc
Q 046221 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQ 311 (572)
Q Consensus 232 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 311 (572)
+++|..+|+++.+.. +++..++..++..+...|++++|...++.+.+.+..+.....
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---------------------- 179 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEI---------------------- 179 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHH----------------------
Confidence 666666666665431 223444555555555555555555555555543321111000
Q ss_pred cCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHH
Q 046221 312 ITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ 391 (572)
Q Consensus 312 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 391 (572)
...+..+...+.+.|++++|...|+++.+. .+.+...+..+...+.+.|++++|.++++.+.+.+......++
T Consensus 180 -----~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 252 (389)
T PRK11788 180 -----AHFYCELAQQALARGDLDAARALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVL 252 (389)
T ss_pred -----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHH
Confidence 001223333444444455555555444311 1112223333333344444444444444444333211112344
Q ss_pred HHHHHHhhhcCChHHHHHHHHHc-CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc---
Q 046221 392 NCLISSYSKCGNVDLAYIVFEEM-GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH--- 467 (572)
Q Consensus 392 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~--- 467 (572)
+.++.+|.+.|++++|...++++ ...|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+..
T Consensus 253 ~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~ 330 (389)
T PRK11788 253 PKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAE 330 (389)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccC
Confidence 55555666666666666666665 33355444555666666666666666666666552 4666556555554442
Q ss_pred cCChHHHHHHHHHhHHhcCCCCChh
Q 046221 468 AGLTNDGLVIFNQMIEENKVKPSQE 492 (572)
Q Consensus 468 ~g~~~~a~~~~~~~~~~~~~~~~~~ 492 (572)
.|+.++++.+++++++ .++.|++.
T Consensus 331 ~g~~~~a~~~~~~~~~-~~~~~~p~ 354 (389)
T PRK11788 331 EGRAKESLLLLRDLVG-EQLKRKPR 354 (389)
T ss_pred CccchhHHHHHHHHHH-HHHhCCCC
Confidence 3456666666666653 22444443
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=6.4e-18 Score=170.64 Aligned_cols=320 Identities=12% Similarity=0.023 Sum_probs=205.6
Q ss_pred HHHHHHHhCCCHHHHHHHHhhcCC---CCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCccchHHHHHHhcccCC
Q 046221 190 SVLDMYSCLMDLDAAIQIFREMEC---KDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGD 266 (572)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 266 (572)
.++..+.+.|+.++|..+++.... .+...+..++.+....|++++|...++++.... +.+...+..+...+...|+
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCC
Confidence 345566677777777777776654 234455556666667777777777777777642 2234455666666777777
Q ss_pred hHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHHHHHHhccCC--CCc-chHHHHHHHHHHcCChHHHHHHHHHH
Q 046221 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE--KSL-VSWTAIISGYVQNGCAREALNQFIKM 343 (572)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~ 343 (572)
++.|...++.+.+.. +.+...+..+...+...|++++|...++.+.. |+. ..+..+ ..+...|++++|...++.+
T Consensus 126 ~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~ 203 (656)
T PRK15174 126 YATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARAL 203 (656)
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHH
Confidence 777777777777653 34455666677777777777777777766532 222 223222 3366677777777777776
Q ss_pred HhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHH----HHHHHHHc-CCCC
Q 046221 344 RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDL----AYIVFEEM-GFLR 418 (572)
Q Consensus 344 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~-~~~~ 418 (572)
. .....++......+...+...|++++|...++.+.+.. +.+...+..+...+...|++++ |...+++. ...|
T Consensus 204 l-~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P 281 (656)
T PRK15174 204 L-PFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS 281 (656)
T ss_pred H-hcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC
Confidence 5 32222333344444556667777777777777777654 4455666667777777777764 67777766 3333
Q ss_pred -CHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChh-HHH
Q 046221 419 -DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD-SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQE-HYG 495 (572)
Q Consensus 419 -~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~ 495 (572)
+...+..+...+...|++++|+..+++..+ ..|+ ...+..+..++.+.|++++|+..++++++.. |+.. .+.
T Consensus 282 ~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~--l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~---P~~~~~~~ 356 (656)
T PRK15174 282 DNVRIVTLYADALIRTGQNEKAIPLLQQSLA--THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK---GVTSKWNR 356 (656)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---ccchHHHH
Confidence 355667777777777777777777777776 3454 3556666777777777777777777776533 3332 333
Q ss_pred HHHHHHHhhCChhHHHHHHHhccC
Q 046221 496 CVVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 496 ~l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
.+..++...|++++|...++++.+
T Consensus 357 ~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345667777777777777777665
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=6.4e-17 Score=167.09 Aligned_cols=152 Identities=7% Similarity=-0.083 Sum_probs=75.9
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHHHHHHhCC
Q 046221 120 AIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLM 199 (572)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (572)
-.+......|+.++|++++.+..... ..+...+..+..++...|++++|..++++.++.. +.+...+..+...+...|
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 34444555566666666666555421 2233345555555556666666666666555542 333444445555555555
Q ss_pred CHHHHHHHHhhcCC--C-CcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCc-cchHHHHHHhcccCChHHHHHHHH
Q 046221 200 DLDAAIQIFREMEC--K-DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDT-VALLNLISVNAILGDLKRGKQLHA 275 (572)
Q Consensus 200 ~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~ 275 (572)
+.++|...+++... | +.. +..+...+...|++++|+..++++.+. .|+. ..+..+..++...+..+.|...++
T Consensus 98 ~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 98 QYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 56655555555543 2 223 555555555555555555555555553 2222 222333334444455555554444
Q ss_pred H
Q 046221 276 Q 276 (572)
Q Consensus 276 ~ 276 (572)
.
T Consensus 175 ~ 175 (765)
T PRK10049 175 D 175 (765)
T ss_pred h
Confidence 3
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=1.1e-16 Score=165.27 Aligned_cols=408 Identities=8% Similarity=-0.071 Sum_probs=232.8
Q ss_pred ChhhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCcccCCCCCC
Q 046221 35 NVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPY 114 (572)
Q Consensus 35 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 114 (572)
++..-.-.+......|+.++|++++.+..... +.+...+..+...+...|++++|..+++..++..+ .+
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P----------~~ 82 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP----------QN 82 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----------CC
Confidence 33344445556667788888888888876522 34444577777777888888888888888777654 33
Q ss_pred ceeHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHHHH
Q 046221 115 LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDM 194 (572)
Q Consensus 115 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 194 (572)
...+..++..+...|++++|+..+++..+.. +.+.. +..+..++...|+.++|...++++++.. +.+...+..+..+
T Consensus 83 ~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~ 159 (765)
T PRK10049 83 DDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQA 159 (765)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4456677777888888888888888887752 22344 6667777778888888888888888764 3445555666777
Q ss_pred HHhCCCHHHHHHHHhhcCC-CCc------ccHHHHHHHHHc-----cCCH---HHHHHHHHHHHhC-CCCCCcc-chHH-
Q 046221 195 YSCLMDLDAAIQIFREMEC-KDV------ISWTRMMGLFVD-----FEYA---GDALKIFREMRKS-RIICDTV-ALLN- 256 (572)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~-~~~------~~~~~li~~~~~-----~~~~---~~a~~~~~~m~~~-~~~p~~~-~~~~- 256 (572)
+...+..+.|+..++.... |+. .....++..... .+++ ++|+..++.+.+. ...|+.. .+..
T Consensus 160 l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a 239 (765)
T PRK10049 160 LRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRA 239 (765)
T ss_pred HHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHH
Confidence 7777888888888877665 110 011112222211 1223 5566666666543 1222221 1110
Q ss_pred ---HHHHhcccCChHHHHHHHHHHHHhCCC-CCcchHHHHHHHHHhcCChhHHHHHHhccCCCCc-------chHHHHHH
Q 046221 257 ---LISVNAILGDLKRGKQLHAQVVLGGLQ-SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSL-------VSWTAIIS 325 (572)
Q Consensus 257 ---ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~l~~ 325 (572)
.+.++...|++++|...|+.+.+.+.+ |+. ....+...|...|++++|...|+++.+.+. .....+..
T Consensus 240 ~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~ 318 (765)
T PRK10049 240 RIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFY 318 (765)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHH
Confidence 022334445666666666666554321 111 111234455555666666665555432111 12333344
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCc---hhHHHHHHHHhhhcC
Q 046221 326 GYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRY---RSVQNCLISSYSKCG 402 (572)
Q Consensus 326 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g 402 (572)
++...|++++|...++.+... .++....+... ...|+ ...+..+...+...|
T Consensus 319 a~~~~g~~~eA~~~l~~~~~~--~P~~~~~~~~~-----------------------~~~p~~~~~~a~~~~a~~l~~~g 373 (765)
T PRK10049 319 SLLESENYPGALTVTAHTINN--SPPFLRLYGSP-----------------------TSIPNDDWLQGQSLLSQVAKYSN 373 (765)
T ss_pred HHHhcccHHHHHHHHHHHhhc--CCceEeecCCC-----------------------CCCCCchHHHHHHHHHHHHHHcC
Confidence 455555555555555555311 11111000000 00122 123344555666777
Q ss_pred ChHHHHHHHHHc--CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhccCChHHHHHHHH
Q 046221 403 NVDLAYIVFEEM--GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD-SSTYLSILNACGHAGLTNDGLVIFN 479 (572)
Q Consensus 403 ~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~ 479 (572)
++++|+++++++ ..+.+...+..+...+...|++++|++.+++..+ +.|+ ...+...+..+...|++++|..+++
T Consensus 374 ~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~ 451 (765)
T PRK10049 374 DLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTD 451 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 777777777776 3323355666667777777777777777777776 4564 3555555566677777777777777
Q ss_pred HhHHh
Q 046221 480 QMIEE 484 (572)
Q Consensus 480 ~~~~~ 484 (572)
++++.
T Consensus 452 ~ll~~ 456 (765)
T PRK10049 452 DVVAR 456 (765)
T ss_pred HHHHh
Confidence 77653
No 23
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.84 E-value=3.6e-16 Score=137.57 Aligned_cols=463 Identities=12% Similarity=0.054 Sum_probs=294.0
Q ss_pred hhhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHc--CCCChHHH-HHHHHHHHHhcCCCCc------
Q 046221 36 VVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAA--GLQNLELA-RSIHGLMVKFGLESDL------ 106 (572)
Q Consensus 36 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~--~~g~~~~a-~~~~~~~~~~~~~~~~------ 106 (572)
+.+=|.++. +..+|.+.++.-+|+.|+..|++.+...-..|+...+ ...++.-| .+.|-.|...|-....
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 344555554 4667899999999999999998888877777766544 33333322 2334444444432221
Q ss_pred -----ccCCCCCCceeHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcC
Q 046221 107 -----FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGL 181 (572)
Q Consensus 107 -----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 181 (572)
|+..| .+..+|..+|.++++.-..+.|.+++++-.....+.+..+||.+|.+-.-.. ..+++.+|....+
T Consensus 195 vAdL~~E~~P-KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm 269 (625)
T KOG4422|consen 195 VADLLFETLP-KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKM 269 (625)
T ss_pred HHHHHHhhcC-CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhc
Confidence 33333 3445778888888888888888888888877777778888888877643222 2667777887778
Q ss_pred CCChhHHhHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCccchHHHHHHh
Q 046221 182 ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVN 261 (572)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 261 (572)
.||..|+|+++.+..+.|+++.|.+ .|.+++.+|++-|+.|...+|..+|..+
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar~---------------------------aalqil~EmKeiGVePsLsSyh~iik~f 322 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDARK---------------------------AALQILGEMKEIGVEPSLSSYHLIIKNF 322 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHHH---------------------------HHHHHHHHHHHhCCCcchhhHHHHHHHh
Confidence 8888888888888887777776653 4677888999999999999999999988
Q ss_pred cccCChHH-HHHHHHHHHHh--C--C----CCCcchHHHHHHHHHhcCChhHHHHHHhccCC--------CCc---chHH
Q 046221 262 AILGDLKR-GKQLHAQVVLG--G--L----QSELRLSNSIIAMYSKCGDLDSSRSVFNQITE--------KSL---VSWT 321 (572)
Q Consensus 262 ~~~~~~~~-a~~~~~~~~~~--~--~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~---~~~~ 321 (572)
++.++..+ +..++.++... | + +.|...|...+..|.+..+.+-|.++-.-... ++. .-|.
T Consensus 323 ~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr 402 (625)
T KOG4422|consen 323 KRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYR 402 (625)
T ss_pred cccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHH
Confidence 88887754 44555555432 1 2 22344566677778888888888777655442 111 2355
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhc
Q 046221 322 AIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401 (572)
Q Consensus 322 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 401 (572)
.+....|+....+.-+..|+.|. -.-.-|+..+...++.+..-.+.++-.-+++..++..|.......-.-++..+++.
T Consensus 403 ~~~~licq~es~~~~~~~Y~~lV-P~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~ 481 (625)
T KOG4422|consen 403 KFFDLICQMESIDVTLKWYEDLV-PSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARD 481 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-cceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcC
Confidence 67778888888999999999998 77888999999999999999999999999999988877544333322222222222
Q ss_pred CChHHHHHHHHHcCCCCCHh---HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 046221 402 GNVDLAYIVFEEMGFLRDVV---SWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIF 478 (572)
Q Consensus 402 g~~~~A~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 478 (572)
...|+.. -+.....-|+ ..-.+.....-.+|.+... .....+.++-.+.+.|+.++|.+++
T Consensus 482 -------------k~hp~tp~r~Ql~~~~ak~a-ad~~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l 545 (625)
T KOG4422|consen 482 -------------KLHPLTPEREQLQVAFAKCA-ADIKEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEML 545 (625)
T ss_pred -------------CCCCCChHHHHHHHHHHHHH-HHHHHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHH
Confidence 1122211 2222211111 1111222223344554333 3344555555667888888888888
Q ss_pred HHhHHhcCCCCChhHHH---HHHHHHHhhCChhHHHHHHHhccC--CCChH-HHHHHHHHHhhhcCCHHHHHHHHHH
Q 046221 479 NQMIEENKVKPSQEHYG---CVVDLLARAGCLSDASGLAGKLLE--GMGPN-IWRALLSGCVLHVGRFQDAEALRSG 549 (572)
Q Consensus 479 ~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~-~~~~l~~~~~~~~g~~~~A~~~~~~ 549 (572)
....+++.-.|-....+ -+++.-.+.++...|..+++-|.. .|... .-+.+...|... ....+|+.-|..
T Consensus 546 ~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f~iN-qeq~~~ls~l~~ 621 (625)
T KOG4422|consen 546 GLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICEGLAQRIMEDFAIN-QEQKEALSNLTA 621 (625)
T ss_pred HHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhhHHHHHHHHhcCcC-HHHHHHHhhhhh
Confidence 87765544444444444 445555677778888888887765 22222 233444444433 333344444433
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=4.9e-17 Score=164.29 Aligned_cols=326 Identities=8% Similarity=-0.030 Sum_probs=254.0
Q ss_pred eHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHHHHHH
Q 046221 117 SCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYS 196 (572)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 196 (572)
-...++..+.+.|++++|..+++........+ ...+..++.+....|+++.|...++.+++.. +.+...+..+...+.
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~ 121 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLL 121 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 34566778889999999999999998874443 4445555567778999999999999999875 556677888889999
Q ss_pred hCCCHHHHHHHHhhcCC--C-CcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCccchHHHHHHhcccCChHHHHHH
Q 046221 197 CLMDLDAAIQIFREMEC--K-DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQL 273 (572)
Q Consensus 197 ~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 273 (572)
..|+.++|...+++... | +...+..+...+...|++++|...++.+.... |+.......+..+...|++++|...
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATCLSFLNKSRLPEDHDL 199 (656)
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999998875 3 56678889999999999999999999887653 3333222223347788999999999
Q ss_pred HHHHHHhCCCCCcchHHHHHHHHHhcCChhHHHHHHhccCC---CCcchHHHHHHHHHHcCChHH----HHHHHHHHHhc
Q 046221 274 HAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE---KSLVSWTAIISGYVQNGCARE----ALNQFIKMRQE 346 (572)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~ 346 (572)
++.+.+....++......+...+.+.|++++|...++.... .+...+..+...+...|++++ |...|++...
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~- 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ- 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh-
Confidence 99987765444444555567788899999999999988764 244577778888999999885 7889988863
Q ss_pred CCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc-CCCCCHhH-HH
Q 046221 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFLRDVVS-WN 424 (572)
Q Consensus 347 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~-~~ 424 (572)
..+.+...+..+...+...|+++.|...++...+.. +.+...+..+..++.+.|++++|...++++ ...|+... +.
T Consensus 279 -l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~ 356 (656)
T PRK15174 279 -FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNR 356 (656)
T ss_pred -hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHH
Confidence 234466788888888999999999999999888764 445666777888999999999999999988 44455433 34
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhc
Q 046221 425 TIIYGYGVNGHGETALALYHKMTET 449 (572)
Q Consensus 425 ~l~~~~~~~~~~~~A~~~~~~~~~~ 449 (572)
.+..++...|+.++|...|++..+.
T Consensus 357 ~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4566788899999999999998874
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.84 E-value=5.1e-16 Score=157.17 Aligned_cols=425 Identities=9% Similarity=-0.038 Sum_probs=313.2
Q ss_pred HHHHHhCCChHHHHHHHHHHHhCCCCCCH--hhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHHHHHHhCC
Q 046221 122 VAGFINNKLFQQAVLLFNFFRGSGLVPNA--VTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLM 199 (572)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (572)
+-...+.|+++.|++.|++..+. .|+. ..+ .++..+...|+.++|...+++.+. ..+........+...+...|
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~-p~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS-SMNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcC
Confidence 34567899999999999999875 4554 234 788888888999999999999882 11222333333466888899
Q ss_pred CHHHHHHHHhhcCC--C-CcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCccchHHHHHHhcccCChHHHHHHHHH
Q 046221 200 DLDAAIQIFREMEC--K-DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQ 276 (572)
Q Consensus 200 ~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 276 (572)
++++|+++|+++.+ | +...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|...+++
T Consensus 117 dyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 117 RWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 99999999999986 3 4566778888999999999999999999875 56666665555555556677669999999
Q ss_pred HHHhCCCCCcchHHHHHHHHHhcCChhHHHHHHhccCCC-CcchH--------HHHHHHH-----HHcCC---hHHHHHH
Q 046221 277 VVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK-SLVSW--------TAIISGY-----VQNGC---AREALNQ 339 (572)
Q Consensus 277 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~--------~~l~~~~-----~~~~~---~~~a~~~ 339 (572)
+.+.. +.+...+..++.++.+.|-...|.++..+-+.- +...+ ...++.- ....+ .+.|+.-
T Consensus 195 ll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~ 273 (822)
T PRK14574 195 AVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALAD 273 (822)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHH
Confidence 99886 566777788889999999999999888765421 00000 0111100 01122 3456666
Q ss_pred HHHHHhcCCCCCCHh-----HHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc
Q 046221 340 FIKMRQEKTDSVDSI-----TLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM 414 (572)
Q Consensus 340 ~~~~~~~~~~~~~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 414 (572)
++.+...-+..|... ...--+-++...++...+++.++.+...+.+....+-..+.++|...+++++|+.+++++
T Consensus 274 ~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~ 353 (822)
T PRK14574 274 YQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSL 353 (822)
T ss_pred HHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 666653333334322 233455677888999999999999999887766778888999999999999999999988
Q ss_pred -C-------CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcC-------------CCCCH-HHHHHHHHHHhccCChH
Q 046221 415 -G-------FLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG-------------EVPDS-STYLSILNACGHAGLTN 472 (572)
Q Consensus 415 -~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g-------------~~p~~-~~~~~l~~~~~~~g~~~ 472 (572)
. ..++......|..+|...+++++|..+++++.+.- ..||. ..+..++..+...|++.
T Consensus 354 ~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~ 433 (822)
T PRK14574 354 YYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLP 433 (822)
T ss_pred hhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHH
Confidence 1 12234445788999999999999999999998831 11233 33455677788999999
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC-CCC-hHHHHHHHHHHhhhcCCHHHHHHHHHHH
Q 046221 473 DGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE-GMG-PNIWRALLSGCVLHVGRFQDAEALRSGS 550 (572)
Q Consensus 473 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~~g~~~~A~~~~~~m 550 (572)
+|++.++++.... |-|......+.+.+...|++.+|++.++.+.. .|+ ..+........... |+|.+|..+.+.+
T Consensus 434 ~Ae~~le~l~~~a--P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l-~e~~~A~~~~~~l 510 (822)
T PRK14574 434 TAQKKLEDLSSTA--PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMAL-QEWHQMELLTDDV 510 (822)
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhh-hhHHHHHHHHHHH
Confidence 9999999997654 77888999999999999999999999987766 454 44555566666555 9999999998887
Q ss_pred HhCCCC
Q 046221 551 QKKGII 556 (572)
Q Consensus 551 ~~~~~~ 556 (572)
.+..++
T Consensus 511 ~~~~Pe 516 (822)
T PRK14574 511 ISRSPE 516 (822)
T ss_pred HhhCCC
Confidence 665544
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.83 E-value=2.9e-16 Score=152.06 Aligned_cols=433 Identities=15% Similarity=0.043 Sum_probs=315.6
Q ss_pred CCceeHHHHHHHHHhCCChHHHHHHHHHHHhCCCC--CCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHhH
Q 046221 113 PYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLV--PNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNS 190 (572)
Q Consensus 113 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 190 (572)
.|....+.|...|.-.|+++.++.+...+...... .-...|..+.+++-..|++++|...|.+..+..-......+-.
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~G 347 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVG 347 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccc
Confidence 56678888999999999999999999888775311 1234577888999999999999999988877542222344556
Q ss_pred HHHHHHhCCCHHHHHHHHhhcCC--C-CcccHHHHHHHHHccC----CHHHHHHHHHHHHhCCCCCCccchHHHHHHhcc
Q 046221 191 VLDMYSCLMDLDAAIQIFREMEC--K-DVISWTRMMGLFVDFE----YAGDALKIFREMRKSRIICDTVALLNLISVNAI 263 (572)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~----~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 263 (572)
|...+.+.|+++.+...|+.+.. | +..+...|...|...+ ..+.|..++....+. .+.|...|..+...+-.
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~-~~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ-TPVDSEAWLELAQLLEQ 426 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHh
Confidence 78899999999999999999876 3 3456666666666554 456677777666654 24455666666555544
Q ss_pred cCChHHHHHHHHHHH----HhCCCCCcchHHHHHHHHHhcCChhHHHHHHhccCCC-------Ccc------hHHHHHHH
Q 046221 264 LGDLKRGKQLHAQVV----LGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK-------SLV------SWTAIISG 326 (572)
Q Consensus 264 ~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~------~~~~l~~~ 326 (572)
++...+...+..+. ..+..+.+...|.+...+...|++..|...|...... +.. +-..+...
T Consensus 427 -~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 427 -TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred -cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence 44444455555443 4555677888899999999999999999998876532 221 22234556
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCCCHh-HHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChH
Q 046221 327 YVQNGCAREALNQFIKMRQEKTDSVDSI-TLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405 (572)
Q Consensus 327 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 405 (572)
+-..++++.|.+.|..+.... |..+ .|..++......++..+|...+....... ..++..++.+...+.+...+.
T Consensus 506 ~E~l~~~~~A~e~Yk~Ilkeh---p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~ 581 (1018)
T KOG2002|consen 506 LEELHDTEVAEEMYKSILKEH---PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWK 581 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHC---chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhc
Confidence 666788999999999997432 3332 34444444445578888888888777654 556667777777888888888
Q ss_pred HHHHHHHHc----CCCCCHhHHHHHHHHHHh------------cCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhcc
Q 046221 406 LAYIVFEEM----GFLRDVVSWNTIIYGYGV------------NGHGETALALYHKMTETGEVP-DSSTYLSILNACGHA 468 (572)
Q Consensus 406 ~A~~~~~~~----~~~~~~~~~~~l~~~~~~------------~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~ 468 (572)
.|.+-|... ...+|..+.-.|.+.|.. .+..++|+++|.+.++. .| |...=+.+.-.++..
T Consensus 582 ~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA~k 659 (1018)
T KOG2002|consen 582 PAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN--DPKNMYAANGIGIVLAEK 659 (1018)
T ss_pred ccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc--Ccchhhhccchhhhhhhc
Confidence 888866555 333666666666665543 23467899999998884 45 667778888889999
Q ss_pred CChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC----CCChHHHHHHHHHHhhhcCCHHHHH
Q 046221 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE----GMGPNIWRALLSGCVLHVGRFQDAE 544 (572)
Q Consensus 469 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~l~~~~~~~~g~~~~A~ 544 (572)
|++.+|..+|.+..+.. .-...+|-.+..+|..+|.+..|+++|+.... ..++.+...|..++... |++.+|.
T Consensus 660 g~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~-~~~~eak 736 (1018)
T KOG2002|consen 660 GRFSEARDIFSQVREAT--SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEA-GKLQEAK 736 (1018)
T ss_pred cCchHHHHHHHHHHHHH--hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHh-hhHHHHH
Confidence 99999999999997654 23556789999999999999999999998766 45677788888888888 9999999
Q ss_pred HHHHHHHhCCCC
Q 046221 545 ALRSGSQKKGII 556 (572)
Q Consensus 545 ~~~~~m~~~~~~ 556 (572)
+.+...+...+.
T Consensus 737 ~~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 737 EALLKARHLAPS 748 (1018)
T ss_pred HHHHHHHHhCCc
Confidence 998887766654
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.81 E-value=3.6e-15 Score=151.05 Aligned_cols=329 Identities=8% Similarity=-0.009 Sum_probs=165.7
Q ss_pred HHhhcCChhhHHHHhccCCCCChh---hHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHH-HH--HHHHcCCCCh
Q 046221 14 NYFKSGKIKEAENLFDEIPEKNVV---SWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMV-GV--LVAAAGLQNL 87 (572)
Q Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~l--l~~~~~~g~~ 87 (572)
...++|+++.|+..|+++.+.++. ....++..+...|+.++|+..+++.. .|+...+. .+ ...+...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCH
Confidence 344666667777777666542221 12255666666677777776666665 23222222 22 3345556677
Q ss_pred HHHHHHHHHHHHhcCCCCcccCCCCCCceeHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChH
Q 046221 88 ELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRA 167 (572)
Q Consensus 88 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 167 (572)
++|..+++++.+..+ .+...+..++..+...++.++|++.++++... .|+...+..++..+...++..
T Consensus 119 d~Aiely~kaL~~dP----------~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~ 186 (822)
T PRK14574 119 DQALALWQSSLKKDP----------TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNY 186 (822)
T ss_pred HHHHHHHHHHHhhCC----------CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHH
Confidence 777777777666654 22344455566666667777777766666654 444444433333333344444
Q ss_pred HHHHHHHHHHHhcCCCChhHHhHHHHHHHhCCCHHHHHHHHhhcCCC-CcccHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 046221 168 LCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK-DVISWTRMMGLFVDFEYAGDALKIFREMRKSR 246 (572)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 246 (572)
+|.+.++++++.. +.+...+..+..++.+.|-...|.++..+-+.- +...+..| ..+.+.+..+ .+
T Consensus 187 ~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l--------~~~~~a~~vr----~a 253 (822)
T PRK14574 187 DALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL--------ERDAAAEQVR----MA 253 (822)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH--------HHHHHHHHHh----hc
Confidence 4666666666654 445555566666666666666666666554320 00000000 0000000000 00
Q ss_pred CCCCccchHHHHHHhcccCCh---HHHHHHHHHHHHh-CCCCCc-ch----HHHHHHHHHhcCChhHHHHHHhccCCCC-
Q 046221 247 IICDTVALLNLISVNAILGDL---KRGKQLHAQVVLG-GLQSEL-RL----SNSIIAMYSKCGDLDSSRSVFNQITEKS- 316 (572)
Q Consensus 247 ~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~-~~~~~~-~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 316 (572)
..++. ....++ +.|..-++.+... +..|.. .. ..-.+-++...|+..++++.|+.+....
T Consensus 254 ~~~~~----------~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~ 323 (822)
T PRK14574 254 VLPTR----------SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGY 323 (822)
T ss_pred ccccc----------cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCC
Confidence 00000 001122 2233333333321 111211 11 1123345566667777777777766432
Q ss_pred -c--chHHHHHHHHHHcCChHHHHHHHHHHHhcCC----CCCCHhHHHHHHHHhcccccHHHHHHHHHHHHH
Q 046221 317 -L--VSWTAIISGYVQNGCAREALNQFIKMRQEKT----DSVDSITLVSILTASGELAALEICLQLHGIAFE 381 (572)
Q Consensus 317 -~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 381 (572)
+ .+-..+..+|...+++++|..+++.+....+ .+++......|.-++...+++++|..+++.+.+
T Consensus 324 ~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~ 395 (822)
T PRK14574 324 KMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSE 395 (822)
T ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 1 2334456667777777777777777653332 123333346677777777777777777777765
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=1e-15 Score=134.77 Aligned_cols=363 Identities=13% Similarity=0.118 Sum_probs=247.3
Q ss_pred HHhccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCC
Q 046221 26 NLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESD 105 (572)
Q Consensus 26 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 105 (572)
-+|+..+ .+..+|..||.++++--..+.|.++|++......+.+..+||.+|.+-+-..+ ++++.+|.+....
T Consensus 198 L~~E~~P-KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~-- 270 (625)
T KOG4422|consen 198 LLFETLP-KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMT-- 270 (625)
T ss_pred HHHhhcC-CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcC--
Confidence 4444444 47789999999999999999999999999988889999999999977653322 7889999998884
Q ss_pred cccCCCCCCceeHHHHHHHHHhCCChHH----HHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHH-HHHHHHHHHHh-
Q 046221 106 LFEGLKNPYLVSCNAIVAGFINNKLFQQ----AVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL-CELIHGLTIKL- 179 (572)
Q Consensus 106 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~- 179 (572)
||..++|+++++..+.|+++. |++++.+|++-|+.|+..+|..+|..+++.++..+ +..++.++...
T Consensus 271 -------Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~l 343 (625)
T KOG4422|consen 271 -------PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSL 343 (625)
T ss_pred -------CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhh
Confidence 889999999999999998764 56889999999999999999999999999888754 44444444432
Q ss_pred -c--C----CCChhHHhHHHHHHHhCCCHHHHHHHHhhcCCC-----------CcccHHHHHHHHHccCCHHHHHHHHHH
Q 046221 180 -G--L----ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECK-----------DVISWTRMMGLFVDFEYAGDALKIFRE 241 (572)
Q Consensus 180 -~--~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~li~~~~~~~~~~~a~~~~~~ 241 (572)
| + +.|...|...+..|.+..+.+-|.++-.-+... ...-|..+....++....+..+..|+.
T Consensus 344 tGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~ 423 (625)
T KOG4422|consen 344 TGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYED 423 (625)
T ss_pred ccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 2 234456777788888889999888877666541 123456677777888888889999999
Q ss_pred HHhCCCCCCccchHHHHHHhcccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHHHHHHhccCCCCcchHH
Q 046221 242 MRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWT 321 (572)
Q Consensus 242 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 321 (572)
|..+-+-|+..+...++++....+.++-..++|.++...|.........-++..+++.. ..|+...-.
T Consensus 424 lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k------------~hp~tp~r~ 491 (625)
T KOG4422|consen 424 LVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK------------LHPLTPERE 491 (625)
T ss_pred hccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC------------CCCCChHHH
Confidence 98888888889999999988888888888888888887663322222211111111111 011111000
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhc
Q 046221 322 AIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401 (572)
Q Consensus 322 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 401 (572)
.+-.... +-|..+++.. ...-.++.+ ...+....+.+...+.+.
T Consensus 492 Ql~~~~a-----k~aad~~e~~-----------------------------e~~~~R~r~--~~~~~t~l~~ia~Ll~R~ 535 (625)
T KOG4422|consen 492 QLQVAFA-----KCAADIKEAY-----------------------------ESQPIRQRA--QDWPATSLNCIAILLLRA 535 (625)
T ss_pred HHHHHHH-----HHHHHHHHHH-----------------------------HhhHHHHHh--ccCChhHHHHHHHHHHHc
Confidence 0000000 0011111111 111122222 234445556677777888
Q ss_pred CChHHHHHHHHHc-------CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 046221 402 GNVDLAYIVFEEM-------GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450 (572)
Q Consensus 402 g~~~~A~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g 450 (572)
|+.++|.+++.-+ +..|......-++..-.+.++...|...++-|...+
T Consensus 536 G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 536 GRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred chHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 8888888887766 222444444455666677778888888888886653
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.77 E-value=4.4e-13 Score=124.68 Aligned_cols=491 Identities=11% Similarity=0.030 Sum_probs=350.1
Q ss_pred CChHHHHHHHHHHHHcCCCCCcchHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCcccCCCCCCceeHHHHHHHHHhCC
Q 046221 50 GFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNK 129 (572)
Q Consensus 50 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 129 (572)
...+.|.-++.+..+. ++.+ .-|.-++++..-++.|.++++...+.-+ .+...|-+-...--.+|
T Consensus 390 E~~~darilL~rAvec-cp~s----~dLwlAlarLetYenAkkvLNkaRe~ip----------td~~IWitaa~LEE~ng 454 (913)
T KOG0495|consen 390 EEPEDARILLERAVEC-CPQS----MDLWLALARLETYENAKKVLNKAREIIP----------TDREIWITAAKLEEANG 454 (913)
T ss_pred cChHHHHHHHHHHHHh-ccch----HHHHHHHHHHHHHHHHHHHHHHHHhhCC----------CChhHHHHHHHHHHhcC
Confidence 3444456666665553 1222 2344456666677788888887776654 34457777667777788
Q ss_pred ChHHHHHHHHH----HHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCC--hhHHhHHHHHHHhCCCHHH
Q 046221 130 LFQQAVLLFNF----FRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILD--VSVNNSVLDMYSCLMDLDA 203 (572)
Q Consensus 130 ~~~~a~~~~~~----m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ 203 (572)
+.+...+++++ +...|+..+...|..=...|-..|..-.+..+....+..|+.-. ..+|..-...|.+.+.++-
T Consensus 455 n~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~c 534 (913)
T KOG0495|consen 455 NVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIEC 534 (913)
T ss_pred CHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHH
Confidence 88877777654 45568888888888888888888888888888888887776433 4677777888888888888
Q ss_pred HHHHHhhcCC---CCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCccchHHHHHHhcccCChHHHHHHHHHHHHh
Q 046221 204 AIQIFREMEC---KDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280 (572)
Q Consensus 204 a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 280 (572)
|..+|....+ .+...|...+..--..|..++...++++.... ++-....+.......-..|++..|..++..+.+.
T Consensus 535 arAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~ 613 (913)
T KOG0495|consen 535 ARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEA 613 (913)
T ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh
Confidence 8888877765 34566777777767778888888888888775 2323334444455556668888888888888776
Q ss_pred CCCCCcchHHHHHHHHHhcCChhHHHHHHhccCC--CCcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHH
Q 046221 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE--KSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVS 358 (572)
Q Consensus 281 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 358 (572)
. +.+..++-+-+........++.|..+|.+... ++...|..-+...--.+..++|.+++++.. ...+.-...|..
T Consensus 614 ~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~l--k~fp~f~Kl~lm 690 (913)
T KOG0495|consen 614 N-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEAL--KSFPDFHKLWLM 690 (913)
T ss_pred C-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHH--HhCCchHHHHHH
Confidence 6 34667777778888888888888888887654 455566666666666777888888887775 233333446666
Q ss_pred HHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc--CCCCCHhHHHHHHHHHHhcCCh
Q 046221 359 ILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM--GFLRDVVSWNTIIYGYGVNGHG 436 (572)
Q Consensus 359 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~ 436 (572)
+.+.+.+.++++.|...|..-.+. +|..+..|-.+...--+.|.+-.|..++++. ..+.+...|-..|..-.+.|+.
T Consensus 691 lGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~ 769 (913)
T KOG0495|consen 691 LGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNK 769 (913)
T ss_pred HhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCH
Confidence 667777777777777776543332 3455667777777777888888888888887 4445677888888888888888
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHh
Q 046221 437 ETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK 516 (572)
Q Consensus 437 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 516 (572)
+.|..+..+.++. .+.+...|.--|...-+.++-......+++. ..|++....+...|....++++|.+.|.+
T Consensus 770 ~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc------e~dphVllaia~lfw~e~k~~kar~Wf~R 842 (913)
T KOG0495|consen 770 EQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC------EHDPHVLLAIAKLFWSEKKIEKAREWFER 842 (913)
T ss_pred HHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc------cCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888887774 3334466777777766766655555555443 45777888899999999999999999999
Q ss_pred ccC-C-CChHHHHHHHHHHhhhcCCHHHHHHHHHHHHhCCCCCCCceeEEEcCCcc
Q 046221 517 LLE-G-MGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFLNSTSRD 570 (572)
Q Consensus 517 ~~~-~-~~~~~~~~l~~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~ 570 (572)
... . ..-.+|..+.....++ |.-++-.+++.+-... .|.-|..|..++..|
T Consensus 843 avk~d~d~GD~wa~fykfel~h-G~eed~kev~~~c~~~--EP~hG~~W~avSK~i 895 (913)
T KOG0495|consen 843 AVKKDPDNGDAWAWFYKFELRH-GTEEDQKEVLKKCETA--EPTHGELWQAVSKDI 895 (913)
T ss_pred HHccCCccchHHHHHHHHHHHh-CCHHHHHHHHHHHhcc--CCCCCcHHHHHhhhH
Confidence 987 3 4455788888888888 9888888888876554 456788888776654
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.74 E-value=3.6e-15 Score=132.36 Aligned_cols=467 Identities=12% Similarity=0.062 Sum_probs=287.8
Q ss_pred HHHHHhhCCChHHHHHHHHHHHHcCCCCCcchH-HHHHHHHcCCCChHHHHHHHHHHHHhcCCCCcccCCCCCCceeHHH
Q 046221 42 VIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTM-VGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNA 120 (572)
Q Consensus 42 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (572)
+.+-|.....+.+|+..|+-+.+....|+.... ..+...+.+.+++.+|.+++...+..-++..- .--+...|.
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink-----~~rikil~n 281 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINK-----DMRIKILNN 281 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccch-----hhHHHHHhh
Confidence 344566677888999999999888878877644 23456677888999999999888766543220 112345666
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHH--------hHHH
Q 046221 121 IVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVN--------NSVL 192 (572)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------~~l~ 192 (572)
+...+.+.|+++.|+..|+...+. .|+-.+-..|+-++...|+-++..+.|..|+.....+|..-| ..|+
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 667788999999999999988774 677776555566666678999999999999876544443211 1222
Q ss_pred HHHHhCCC-----------HHHHHHHHhhcCCCCccc-HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-ccchHHHHH
Q 046221 193 DMYSCLMD-----------LDAAIQIFREMECKDVIS-WTRMMGLFVDFEYAGDALKIFREMRKSRIICD-TVALLNLIS 259 (572)
Q Consensus 193 ~~~~~~~~-----------~~~a~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~ 259 (572)
.--.+... .++++..--++..|-+.+ |.+ ...-.++.++.+...|- ...-..-..
T Consensus 360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~------------g~dwcle~lk~s~~~~la~dlei~ka~ 427 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA------------GCDWCLESLKASQHAELAIDLEINKAG 427 (840)
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc------------ccHHHHHHHHHhhhhhhhhhhhhhHHH
Confidence 22221111 111111111111111000 000 00011111111100000 000001123
Q ss_pred HhcccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHh--cCChhHHHHHHhccCCCCcchHHHH-----HHHHHHcCC
Q 046221 260 VNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSK--CGDLDSSRSVFNQITEKSLVSWTAI-----ISGYVQNGC 332 (572)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~l-----~~~~~~~~~ 332 (572)
.+.+.|+++.|.++++.+.+..-.......+.|-..+.- ..++.+|...-+.....| -||.- ...-..+|+
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d--ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID--RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc--ccCHHHhhcCCceeeecCc
Confidence 456778888888888877765433333333333322222 234556665555443322 12221 112234688
Q ss_pred hHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHH
Q 046221 333 AREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFE 412 (572)
Q Consensus 333 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 412 (572)
+++|.+.+++.. .....-....|+ +.-.+...|++++|.+.|-.+... +..+..+.-.+...|....+...|++++.
T Consensus 506 ~dka~~~ykeal-~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~ 582 (840)
T KOG2003|consen 506 LDKAAEFYKEAL-NNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLM 582 (840)
T ss_pred HHHHHHHHHHHH-cCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 999999998886 332222222333 333456778889988887665543 23455666667788888888999999888
Q ss_pred Hc--CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC
Q 046221 413 EM--GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPS 490 (572)
Q Consensus 413 ~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 490 (572)
+. -++.|+.....|...|-+.|+-.+|.+.+-+--.- ++.+..|..-|..-|....-+++++.+|+++. -++|+
T Consensus 583 q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa---liqp~ 658 (840)
T KOG2003|consen 583 QANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA---LIQPN 658 (840)
T ss_pred HhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH---hcCcc
Confidence 88 45456788888889999999998888876655543 44477888888888888888899999998763 36888
Q ss_pred hhHHHHHH-HHHHhhCChhHHHHHHHhccC--CCChHHHHHHHHHHhhh
Q 046221 491 QEHYGCVV-DLLARAGCLSDASGLAGKLLE--GMGPNIWRALLSGCVLH 536 (572)
Q Consensus 491 ~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~ 536 (572)
..-|..++ .++.+.|++++|.++++.... +.+......|++.+..-
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dl 707 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDL 707 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccc
Confidence 88888766 456778999999999988877 55666677777776544
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.72 E-value=1.1e-12 Score=126.94 Aligned_cols=530 Identities=13% Similarity=0.056 Sum_probs=344.9
Q ss_pred hhcCChhhHHHHhccCCC---CChhhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHcCCCChHHHHH
Q 046221 16 FKSGKIKEAENLFDEIPE---KNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARS 92 (572)
Q Consensus 16 ~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 92 (572)
-..|++++|.+++.++.+ .+...|.+|...|-..|+.+++...+-..--.. +-|...|..+-......|++++|.-
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHH
Confidence 344999999999999876 467899999999999999999987765443322 4455788888888889999999999
Q ss_pred HHHHHHHhcCCCCcccCCCCCCceeHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHH----HHHHHhccCChHH
Q 046221 93 IHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLT----VIRGCVALGSRAL 168 (572)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~----ll~~~~~~~~~~~ 168 (572)
++.++++..+ ++....-.-+..|-+.|+...|.+.|.++.....+.|..-+.. +++.+...++.+.
T Consensus 229 cy~rAI~~~p----------~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 229 CYSRAIQANP----------SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred HHHHHHhcCC----------cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 9999999886 4445555667888999999999999999998744333333333 3455666777788
Q ss_pred HHHHHHHHHHh-cCCCChhHHhHHHHHHHhCCCHHHHHHHHhhcCC--------------------------CCcccHH-
Q 046221 169 CELIHGLTIKL-GLILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC--------------------------KDVISWT- 220 (572)
Q Consensus 169 a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------------------------~~~~~~~- 220 (572)
|.+.++..... +-..+...++.++..+.+...++.|......+.. ++..+|+
T Consensus 299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l 378 (895)
T KOG2076|consen 299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL 378 (895)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence 88888887763 2355667788888889888888888877655432 1112222
Q ss_pred ---HHHHHHHccCCHHHHHHHHHHHHhCCCC--CCccchHHHHHHhcccCChHHHHHHHHHHHHhCCCCCcchHHHHHHH
Q 046221 221 ---RMMGLFVDFEYAGDALKIFREMRKSRII--CDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAM 295 (572)
Q Consensus 221 ---~li~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 295 (572)
.+.-++...+..+....+........+. -+...|.-+..++...|.+..|..++..+.....-.+..+|-.+..+
T Consensus 379 ~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 379 RVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred hhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 2223344444444555555555555533 34567888999999999999999999999988766678899999999
Q ss_pred HHhcCChhHHHHHHhccCCCCcc---hHHHHHHHHHHcCChHHHHHHHHHHHh-------cCCCCCCHhHHHHHHHHhcc
Q 046221 296 YSKCGDLDSSRSVFNQITEKSLV---SWTAIISGYVQNGCAREALNQFIKMRQ-------EKTDSVDSITLVSILTASGE 365 (572)
Q Consensus 296 ~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~~ll~~~~~ 365 (572)
|...|..+.|...|+.+..-.+. .-..|...+.+.|+.++|++.+..+.. .....|+..........+..
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~ 538 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQ 538 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHH
Confidence 99999999999999998754333 444566678899999999999988641 22344555555556666777
Q ss_pred cccHHHHHHHHHHHHHhcC----------------------CCchhHHHHHHHHhhhcCChHHHHHHHHHc---------
Q 046221 366 LAALEICLQLHGIAFEAGF----------------------PRYRSVQNCLISSYSKCGNVDLAYIVFEEM--------- 414 (572)
Q Consensus 366 ~~~~~~a~~~~~~~~~~~~----------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------- 414 (572)
.|+.++-..+-..|+.... +....+...++.+-.+.++.....+-...-
T Consensus 539 ~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~ 618 (895)
T KOG2076|consen 539 VGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELR 618 (895)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhc
Confidence 7877776655444433211 111112222333333333322222111110
Q ss_pred CCCCCH--hHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHH---H-HHHHHHHHhccCChHHHHHHHHHhHHhcCC
Q 046221 415 GFLRDV--VSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSS---T-YLSILNACGHAGLTNDGLVIFNQMIEENKV 487 (572)
Q Consensus 415 ~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~---~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 487 (572)
+...+. ..+..++.++++.+++++|+.+...+....+-- +.. . -...+.++...+++..|...++.|+...+.
T Consensus 619 ~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~ 698 (895)
T KOG2076|consen 619 GLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQF 698 (895)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhh
Confidence 221111 234456677888899999999888887653211 222 2 233455667888999999999888866433
Q ss_pred CCChh---HHHHHHHHHHhhCChhHHHHHHHhccC-CCChHHHHHHHHH-HhhhcCCHHHHHHHHHHHHhCCCC
Q 046221 488 KPSQE---HYGCVVDLLARAGCLSDASGLAGKLLE-GMGPNIWRALLSG-CVLHVGRFQDAEALRSGSQKKGII 556 (572)
Q Consensus 488 ~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~-~~~~~g~~~~A~~~~~~m~~~~~~ 556 (572)
..++. .|+.....+.+.|+-.-=.+++..+.. +|+......++.+ .....+.+..|+..+-+.....+.
T Consensus 699 ~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd 772 (895)
T KOG2076|consen 699 YLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPD 772 (895)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCC
Confidence 32322 455455555555554444444444433 3333222222221 111237788888877666555543
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.72 E-value=3.3e-12 Score=123.64 Aligned_cols=498 Identities=11% Similarity=0.030 Sum_probs=340.2
Q ss_pred HHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCcccCCCCCCceeHHHHHH
Q 046221 44 HGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVA 123 (572)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 123 (572)
+.+.-.|+.++|.+++.+..+.. +.....|..|...+-..|+.+++...+-.+....+ .|...|-.+..
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p----------~d~e~W~~lad 215 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP----------KDYELWKRLAD 215 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC----------CChHHHHHHHH
Confidence 34455599999999999999875 66778999999999999999999877655544443 45578999999
Q ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHH----hHHHHHHHhCC
Q 046221 124 GFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVN----NSVLDMYSCLM 199 (572)
Q Consensus 124 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~ 199 (572)
...+.|++++|.-+|.+..+.. +++...+--=...|-+.|+...|...+.++.....+.|..-. -..+..+...+
T Consensus 216 ls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~ 294 (895)
T KOG2076|consen 216 LSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHN 294 (895)
T ss_pred HHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999874 344445555567788999999999999999987543333222 23455666777
Q ss_pred CHHHHHHHHhhcCC-----CCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCC----------------------CCcc
Q 046221 200 DLDAAIQIFREMEC-----KDVISWTRMMGLFVDFEYAGDALKIFREMRKSRII----------------------CDTV 252 (572)
Q Consensus 200 ~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~----------------------p~~~ 252 (572)
+-+.|.+.++.... -+...++.++..+.+...++.+......+...... |+..
T Consensus 295 ~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~ 374 (895)
T KOG2076|consen 295 ERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKEL 374 (895)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCC
Confidence 77889888887765 25567899999999999999999998888762111 1222
Q ss_pred chH----HHHHHhcccCChHHHHHHHHHHHHhCC--CCCcchHHHHHHHHHhcCChhHHHHHHhccCCC----CcchHHH
Q 046221 253 ALL----NLISVNAILGDLKRGKQLHAQVVLGGL--QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK----SLVSWTA 322 (572)
Q Consensus 253 ~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~ 322 (572)
.|. .+.-++.+....+....+...+..... ..+...|.-+..+|...|++..|..+|..+... +...|-.
T Consensus 375 s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~ 454 (895)
T KOG2076|consen 375 SYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYK 454 (895)
T ss_pred CccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHH
Confidence 221 233445566666667777777777763 445667888999999999999999999998853 4568999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHH--------HHhcCCCchhHHHHH
Q 046221 323 IISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIA--------FEAGFPRYRSVQNCL 394 (572)
Q Consensus 323 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~--------~~~~~~~~~~~~~~l 394 (572)
+..+|...|.+++|...|+......+...| .-.+|...+.+.|+.++|.+.+..+ ...+..|........
T Consensus 455 ~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D--~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r 532 (895)
T KOG2076|consen 455 LARCYMELGEYEEAIEFYEKVLILAPDNLD--ARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHR 532 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCCCchh--hhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHH
Confidence 999999999999999999999744443333 4455666778899999999999874 334556666666677
Q ss_pred HHHhhhcCChHHHHHHHHHc--------CCCC-----------------CHhHHHHHHHHHHhcCChHHHHHH------H
Q 046221 395 ISSYSKCGNVDLAYIVFEEM--------GFLR-----------------DVVSWNTIIYGYGVNGHGETALAL------Y 443 (572)
Q Consensus 395 ~~~~~~~g~~~~A~~~~~~~--------~~~~-----------------~~~~~~~l~~~~~~~~~~~~A~~~------~ 443 (572)
...+...|+.++=..+-..| -+-| ........+.+-.+.++......- +
T Consensus 533 ~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~ 612 (895)
T KOG2076|consen 533 CDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEF 612 (895)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhh
Confidence 78888899888755544444 1111 111122222333333322111111 1
Q ss_pred HHHHhcCCCCCH--HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChh----HHHHHHHHHHhhCChhHHHHHHHhc
Q 046221 444 HKMTETGEVPDS--STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQE----HYGCVVDLLARAGCLSDASGLAGKL 517 (572)
Q Consensus 444 ~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~ 517 (572)
.--...|+.-+. ..+.-++.++++.+++.+|..+...+++..-+.-+.. .-...+.+.+..+++..|.+.++.+
T Consensus 613 ~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~ 692 (895)
T KOG2076|consen 613 RAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSV 692 (895)
T ss_pred hhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 111112222222 3456677788999999999999988876544433433 2234456677889999999999887
Q ss_pred cC------CC-ChHHHHHHHHHHhhhcCCHHHHHHHHHHHHhCCCC
Q 046221 518 LE------GM-GPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGII 556 (572)
Q Consensus 518 ~~------~~-~~~~~~~l~~~~~~~~g~~~~A~~~~~~m~~~~~~ 556 (572)
.. .| ....|+..+...... |+-.--.+.+..+......
T Consensus 693 i~~~~~~~~~~q~~l~n~~~s~~~~~-~q~v~~~R~~~~~~~~~~~ 737 (895)
T KOG2076|consen 693 ITQFQFYLDVYQLNLWNLDFSYFSKY-GQRVCYLRLIMRLLVKNKD 737 (895)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccCcc
Confidence 75 12 233466555544444 5544444444444444433
No 33
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=3.5e-12 Score=114.33 Aligned_cols=429 Identities=13% Similarity=0.084 Sum_probs=319.7
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCcccCCCCCCceeHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHh
Q 046221 83 GLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAV-TMLTVIRGCV 161 (572)
Q Consensus 83 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~ 161 (572)
.++++..|.++|+..+.... .++..|-..+..-.++.....|..++++.... -|.+. .|..-+..--
T Consensus 85 sq~e~~RARSv~ERALdvd~----------r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE 152 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDY----------RNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEE 152 (677)
T ss_pred hHHHHHHHHHHHHHHHhccc----------ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHH
Confidence 55677788888888877653 66778888888888999999999999988764 34333 3444444555
Q ss_pred ccCChHHHHHHHHHHHHhcCCCChhHHhHHHHHHHhCCCHHHHHHHHhhcC--CCCcccHHHHHHHHHccCCHHHHHHHH
Q 046221 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREME--CKDVISWTRMMGLFVDFEYAGDALKIF 239 (572)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~ 239 (572)
..|++..|.++|+...+ ..|+...|.+.|..-.+-..++.|..++++.. .|++.+|-...+.=.++|....+..+|
T Consensus 153 ~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred HhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 67899999999988776 48999999999999999999999999999865 488888988888888999999999998
Q ss_pred HHHHhCCCCCCcc----chHHHHHHhcccCChHHHHHHHHHHHHhCCCC-CcchHHHHHHHHHhcCChhHHHHH------
Q 046221 240 REMRKSRIICDTV----ALLNLISVNAILGDLKRGKQLHAQVVLGGLQS-ELRLSNSIIAMYSKCGDLDSSRSV------ 308 (572)
Q Consensus 240 ~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~------ 308 (572)
....+. ..|.. .|.+....-.+...++.|.-+|+-.+.+-... ....|..+...--+-|+.....+.
T Consensus 231 erAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk 308 (677)
T KOG1915|consen 231 ERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRK 308 (677)
T ss_pred HHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhh
Confidence 887654 12222 23333333345567888888888887764222 134555555554555665443332
Q ss_pred --HhccCCCCc---chHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHh-------HHH---HHHHHhcccccHHHHH
Q 046221 309 --FNQITEKSL---VSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSI-------TLV---SILTASGELAALEICL 373 (572)
Q Consensus 309 --~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~---~ll~~~~~~~~~~~a~ 373 (572)
++.+.+.|+ .+|--.+..-...|+.+...++|++.. .+++|-.. .|. ..+-.-....+.+.+.
T Consensus 309 ~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAI--anvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 309 FQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAI--ANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHH--ccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 233333444 466667777778899999999999994 55666331 111 1122224567999999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHh----hhcCChHHHHHHHHHc-CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 046221 374 QLHGIAFEAGFPRYRSVQNCLISSY----SKCGNVDLAYIVFEEM-GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTE 448 (572)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 448 (572)
++++...+ -+|....+|.-+--+| .++.++..|.+++... |..|-..+|...|..-.+.++++.+..+|++.++
T Consensus 387 ~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle 465 (677)
T KOG1915|consen 387 QVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE 465 (677)
T ss_pred HHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999988 3555666666554444 4678999999999988 8889999999999999999999999999999999
Q ss_pred cCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC-CCChHHH
Q 046221 449 TGEVP-DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE-GMGPNIW 526 (572)
Q Consensus 449 ~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~ 526 (572)
..| |..+|......-...|+.++|..+|+-++....+......|.+.|+.=...|.++.|..+++++.+ .+-..+|
T Consensus 466 --~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvW 543 (677)
T KOG1915|consen 466 --FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVW 543 (677)
T ss_pred --cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHH
Confidence 456 558898888888899999999999999987665555666888888888999999999999999988 5555577
Q ss_pred HHHHHH
Q 046221 527 RALLSG 532 (572)
Q Consensus 527 ~~l~~~ 532 (572)
-+...-
T Consensus 544 isFA~f 549 (677)
T KOG1915|consen 544 ISFAKF 549 (677)
T ss_pred HhHHHH
Confidence 766543
No 34
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.70 E-value=2e-11 Score=114.02 Aligned_cols=472 Identities=15% Similarity=0.087 Sum_probs=365.8
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCcccCCCCCCceeHHHHHHHHHhCCChHHHH
Q 046221 56 MKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAV 135 (572)
Q Consensus 56 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 135 (572)
.+++++.+++ -|+.. .|-.+.....+.+.|..++....+.-+. -..|.-++.+..-++.|.
T Consensus 366 ~RVlRKALe~--iP~sv---~LWKaAVelE~~~darilL~rAveccp~--------------s~dLwlAlarLetYenAk 426 (913)
T KOG0495|consen 366 KRVLRKALEH--IPRSV---RLWKAAVELEEPEDARILLERAVECCPQ--------------SMDLWLALARLETYENAK 426 (913)
T ss_pred HHHHHHHHHh--CCchH---HHHHHHHhccChHHHHHHHHHHHHhccc--------------hHHHHHHHHHHHHHHHHH
Confidence 3455555544 33332 2334444556667788888888776542 223455667778899999
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHH----HhcCCCChhHHhHHHHHHHhCCCHHHHHHHHhhc
Q 046221 136 LLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTI----KLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM 211 (572)
Q Consensus 136 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (572)
.+++..++. ++.+...|.+....--..|+.+...++++.-+ ..|+..+...|-.=...+-+.|..-.+..+....
T Consensus 427 kvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~av 505 (913)
T KOG0495|consen 427 KVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAV 505 (913)
T ss_pred HHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHH
Confidence 999999886 67788888888777788899999988877644 4678888888888888888888888888888776
Q ss_pred CC------CCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCccchHHHHHHhcccCChHHHHHHHHHHHHhCCCCC
Q 046221 212 EC------KDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE 285 (572)
Q Consensus 212 ~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 285 (572)
.. .-..+|+.-.+.|.+.+.++-|..+|....+- .+-+...|..+...--..|..+....+++++...- +..
T Consensus 506 igigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pka 583 (913)
T KOG0495|consen 506 IGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKA 583 (913)
T ss_pred HhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-Ccc
Confidence 54 23468899999999999999999999988875 34455667777666677799999999999998775 455
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHhccCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHH
Q 046221 286 LRLSNSIIAMYSKCGDLDSSRSVFNQITE---KSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTA 362 (572)
Q Consensus 286 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~ 362 (572)
...+-.....+-..|++..|..++...-+ .+...|-.-+.....+..++.|..+|.+.. ...|+...|..-+..
T Consensus 584 e~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar---~~sgTeRv~mKs~~~ 660 (913)
T KOG0495|consen 584 EILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKAR---SISGTERVWMKSANL 660 (913)
T ss_pred hhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHh---ccCCcchhhHHHhHH
Confidence 66677777778888999999999988764 244678888888899999999999999986 355667777776777
Q ss_pred hcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc-CCCCC-HhHHHHHHHHHHhcCChHHHH
Q 046221 363 SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFLRD-VVSWNTIIYGYGVNGHGETAL 440 (572)
Q Consensus 363 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~ 440 (572)
.--+++.++|.++++...+. ++.-...|..+.+.+-+.++.+.|...|..- ..-|+ +..|-.|...--+.|.+-.|.
T Consensus 661 er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR 739 (913)
T KOG0495|consen 661 ERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRAR 739 (913)
T ss_pred HHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHH
Confidence 77788999999999888775 4566778888999999999999999988876 33354 566777777777888999999
Q ss_pred HHHHHHHhcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC
Q 046221 441 ALYHKMTETGEVP-DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 441 ~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
.++++.+-. .| +...|...|+.-.+.|..+.|..++.+++++. +.+...|..-|...-+.++-..+.+.+++..
T Consensus 740 ~ildrarlk--NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQec--p~sg~LWaEaI~le~~~~rkTks~DALkkce- 814 (913)
T KOG0495|consen 740 SILDRARLK--NPKNALLWLESIRMELRAGNKEQAELLMAKALQEC--PSSGLLWAEAIWLEPRPQRKTKSIDALKKCE- 814 (913)
T ss_pred HHHHHHHhc--CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccchhHHHHHHhccCcccchHHHHHHHhcc-
Confidence 999998875 45 56889999999999999999999999998654 6666788888888888888778887777764
Q ss_pred CCChHHHHHHHHHHhhhcCCHHHHHHHHHHHHhCCCCCCCc
Q 046221 520 GMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPG 560 (572)
Q Consensus 520 ~~~~~~~~~l~~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 560 (572)
-|+.+.......+... .+++.|.+.|++..+.+......
T Consensus 815 -~dphVllaia~lfw~e-~k~~kar~Wf~Ravk~d~d~GD~ 853 (913)
T KOG0495|consen 815 -HDPHVLLAIAKLFWSE-KKIEKAREWFERAVKKDPDNGDA 853 (913)
T ss_pred -CCchhHHHHHHHHHHH-HHHHHHHHHHHHHHccCCccchH
Confidence 5566666666667766 89999999999988776654433
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.68 E-value=1.3e-13 Score=122.72 Aligned_cols=466 Identities=13% Similarity=0.065 Sum_probs=277.8
Q ss_pred hhhHHHHHhhcCChhhHHHHhccCCC----CChhhH-HHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcc----hHHHHH
Q 046221 8 SSKLLSNYFKSGKIKEAENLFDEIPE----KNVVSW-SIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSF----TMVGVL 78 (572)
Q Consensus 8 ~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~ll 78 (572)
...|.+.|.......+|+..++-+.+ ||.... -.+-+.+.+.+.+.+|++.|+-.+..-...+.. ..+.+.
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 34466677777778888888887765 443322 223456788889999999998877652112222 344445
Q ss_pred HHHcCCCChHHHHHHHHHHHHhcCCCCcccCCCCCCceeHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHh-------
Q 046221 79 VAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAV------- 151 (572)
Q Consensus 79 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~------- 151 (572)
-.+.+.|.++.|..-|++..... |+..+--.|+-++..-|+.++..+.|.+|..--..||..
T Consensus 284 vtfiq~gqy~dainsfdh~m~~~-----------pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~d 352 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEEA-----------PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKD 352 (840)
T ss_pred eeEEecccchhhHhhHHHHHHhC-----------ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcC
Confidence 56779999999999999988875 555444445556666799999999999998654333332
Q ss_pred -----hHHHHHHH-----HhccCChHHHHHHH---HHHHHhcCCCChhHHhHHHHHHHhCCCHHHHHHHHhhcCC-C-Cc
Q 046221 152 -----TMLTVIRG-----CVALGSRALCELIH---GLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC-K-DV 216 (572)
Q Consensus 152 -----~~~~ll~~-----~~~~~~~~~a~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~ 216 (572)
..+..|.. ..+.+ ...|++.. ..++.--+.|+-.. -.+-+++.++.-.. + -.
T Consensus 353 dp~~~ll~eai~nd~lk~~ek~~-ka~aek~i~ta~kiiapvi~~~fa~------------g~dwcle~lk~s~~~~la~ 419 (840)
T KOG2003|consen 353 DPDDNLLNEAIKNDHLKNMEKEN-KADAEKAIITAAKIIAPVIAPDFAA------------GCDWCLESLKASQHAELAI 419 (840)
T ss_pred CcchHHHHHHHhhHHHHHHHHhh-hhhHHHHHHHHHHHhccccccchhc------------ccHHHHHHHHHhhhhhhhh
Confidence 22222211 11111 11111111 11111112222110 01111221111110 0 00
Q ss_pred ccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCccchH--HHHHHhcccCChHHHHHHHHHHHHhCCCCCcchHHHHHH
Q 046221 217 ISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALL--NLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIA 294 (572)
Q Consensus 217 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 294 (572)
..--.-...+.++|+++.|.++++-+.+.+-+.-...-+ .++..+..-.++..|.+.-+..+... ..+......-.+
T Consensus 420 dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn 498 (840)
T KOG2003|consen 420 DLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGN 498 (840)
T ss_pred hhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCc
Confidence 000111234667788888888877776553222222222 22222222345666666655554433 122211111122
Q ss_pred HHHhcCChhHHHHHHhccCCCCcchHHHHH---HHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHH
Q 046221 295 MYSKCGDLDSSRSVFNQITEKSLVSWTAII---SGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEI 371 (572)
Q Consensus 295 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 371 (572)
.-...|++++|...|.+....|..+-.+|. -.+-..|+.++|++.|-++ ..-...+...+.-+...|....+...
T Consensus 499 ~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~kl--h~il~nn~evl~qianiye~led~aq 576 (840)
T KOG2003|consen 499 IAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKL--HAILLNNAEVLVQIANIYELLEDPAQ 576 (840)
T ss_pred eeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHH--HHHHHhhHHHHHHHHHHHHHhhCHHH
Confidence 233457888888888887776665443333 2355677888888888776 33334455566666677777778888
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc--CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 046221 372 CLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM--GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449 (572)
Q Consensus 372 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 449 (572)
|++++.+.... ++.++.+.+.|...|-+.|+-..|.+..-+- -++.+..+..-|..-|....-+++++.+|++..-
T Consensus 577 aie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal- 654 (840)
T KOG2003|consen 577 AIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL- 654 (840)
T ss_pred HHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh-
Confidence 88877655432 4667788888888888888888888776555 3444566666677777777778888888888766
Q ss_pred CCCCCHHHHHHHHHHH-hccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhC
Q 046221 450 GEVPDSSTYLSILNAC-GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAG 505 (572)
Q Consensus 450 g~~p~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 505 (572)
+.|+..-|..++..| .+.|++.+|..+++..-+ .++.|...+..|+..+...|
T Consensus 655 -iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr--kfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 655 -IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR--KFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred -cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCccchHHHHHHHHHhcccc
Confidence 788888888777655 467888888888888743 35778888888888776666
No 36
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.65 E-value=1.9e-13 Score=131.41 Aligned_cols=496 Identities=10% Similarity=0.001 Sum_probs=256.4
Q ss_pred CCCCcchhhHHHHHhhcCChhhHHHHhccCCC----------------------------CChhhHHHHHHHHhhCCChH
Q 046221 2 CIDPYNSSKLLSNYFKSGKIKEAENLFDEIPE----------------------------KNVVSWSIVIHGYSINGFHE 53 (572)
Q Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------------------------~~~~~~~~li~~~~~~~~~~ 53 (572)
+|+.+||..+|.-||..|+.+.|- +|..|.- |.+.+|..+..+|..+|+..
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ayr~hGDli 100 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAYRIHGDLI 100 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHHHHHHHhccchH
Confidence 588999999999999999999998 7776642 34567777777777777665
Q ss_pred HHHHHHHH-H-------HHcCCCCCcchHHHHHHHH--------------cCCCChHHHHHHHHHH------------HH
Q 046221 54 KSMKAFSH-M-------MLSGLLPNSFTMVGVLVAA--------------AGLQNLELARSIHGLM------------VK 99 (572)
Q Consensus 54 ~a~~~~~~-m-------~~~~~~~~~~~~~~ll~~~--------------~~~g~~~~a~~~~~~~------------~~ 99 (572)
. ++..++ | ...|+......+-..+.++ .-.|-++.+.+++..+ ++
T Consensus 101 ~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~p~~vfLr 179 (1088)
T KOG4318|consen 101 L-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLR 179 (1088)
T ss_pred H-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccchHHHHHH
Confidence 4 222222 2 1233322111111111111 1112222222222110 00
Q ss_pred hcCCCC-c----------ccCCCCCCceeHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHH
Q 046221 100 FGLESD-L----------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRAL 168 (572)
Q Consensus 100 ~~~~~~-~----------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 168 (572)
....+. . +.+ .|+..+|..++..-..+|+.+.|..++.+|++.|+..+..-|..++-+ .++..-
T Consensus 180 qnv~~ntpvekLl~~cksl~e--~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~ 254 (1088)
T KOG4318|consen 180 QNVVDNTPVEKLLNMCKSLVE--APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQV 254 (1088)
T ss_pred HhccCCchHHHHHHHHHHhhc--CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchH
Confidence 000000 0 111 366667777777777777777777777777777777666666666554 666666
Q ss_pred HHHHHHHHHHhcCCCChhHHhHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHccCCHHHHHHHH---------
Q 046221 169 CELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIF--------- 239 (572)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~--------- 239 (572)
++.+++.|.+.|+.|+..|+...+..+..+|....+. -..+....+++-+..-.-.| ..|.+.+
T Consensus 255 ~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~-----e~sq~~hg~tAavrsaa~rg--~~a~k~l~~nl~~~v~ 327 (1088)
T KOG4318|consen 255 FEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGE-----EGSQLAHGFTAAVRSAACRG--LLANKRLRQNLRKSVI 327 (1088)
T ss_pred HHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcc-----cccchhhhhhHHHHHHHhcc--cHhHHHHHHHHHHHHH
Confidence 7777777777777777777766665555544321111 11122222222222222222 1111111
Q ss_pred ---HHHHhCCCCCCccchHHHHHHhcccCChHHHHHHHHHHHHhCCC---CCcchHHHHHHHHHhcCChhHHHHHHhccC
Q 046221 240 ---REMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ---SELRLSNSIIAMYSKCGDLDSSRSVFNQIT 313 (572)
Q Consensus 240 ---~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 313 (572)
.+..-.|+.-....|... .-....|.-+..+++...+..--.. .++..+..++.- .|.++.
T Consensus 328 ~s~k~~fLlg~d~~~aiws~c-~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrq------------yFrr~e 394 (1088)
T KOG4318|consen 328 GSTKKLFLLGTDILEAIWSMC-EKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQ------------YFRRIE 394 (1088)
T ss_pred HHhhHHHHhccccchHHHHHH-HHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHH------------HHHHHH
Confidence 111111222122222211 1122245555555555444321111 111222222332 233322
Q ss_pred CCCcc-hHHHHHHHHHH---cC------------ChHHHHHHHHHHHh---cCCCCC-------CHhHHHHHHHHhcccc
Q 046221 314 EKSLV-SWTAIISGYVQ---NG------------CAREALNQFIKMRQ---EKTDSV-------DSITLVSILTASGELA 367 (572)
Q Consensus 314 ~~~~~-~~~~l~~~~~~---~~------------~~~~a~~~~~~~~~---~~~~~~-------~~~~~~~ll~~~~~~~ 367 (572)
.+... .++ .-.+... .. +...+.+-+..... .....| -...-+.++..|++.-
T Consensus 395 ~~~~~~i~~-~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~ 473 (1088)
T KOG4318|consen 395 RHICSRIYY-AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEY 473 (1088)
T ss_pred hhHHHHHHH-HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHH
Confidence 22111 111 0011110 11 11111111111110 001111 1112233444455555
Q ss_pred cHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc-----CCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 046221 368 ALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-----GFLRDVVSWNTIIYGYGVNGHGETALAL 442 (572)
Q Consensus 368 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 442 (572)
+..++...-+.....-++ ..|..|++.++.....+.|..+.++. .+..|..-+..+.+.+.+.+....+..+
T Consensus 474 n~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~ti 550 (1088)
T KOG4318|consen 474 NKLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTI 550 (1088)
T ss_pred HHHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHH
Confidence 555555433333332222 67889999999999999999999998 3335666788888999999999999999
Q ss_pred HHHHHhcCC-CCCH-HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC-
Q 046221 443 YHKMTETGE-VPDS-STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE- 519 (572)
Q Consensus 443 ~~~~~~~g~-~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 519 (572)
++++.+.-. .|+. .++..++......|+.+...++.+-+. ..|+..+ .-++....+.++...|.++.+....
T Consensus 551 L~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lv-slgl~et----gPl~~vhLrkdd~s~a~ea~e~~~qk 625 (1088)
T KOG4318|consen 551 LYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILV-SLGLSET----GPLWMVHLRKDDQSAAQEAPEPEEQK 625 (1088)
T ss_pred HhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHH-Hhhhhhc----ccceEEEeeccchhhhhhcchHHHHH
Confidence 999987422 3333 566677778888899988888887764 5555442 3455566788899999888887665
Q ss_pred -CCChHHHHHHHHHH
Q 046221 520 -GMGPNIWRALLSGC 533 (572)
Q Consensus 520 -~~~~~~~~~l~~~~ 533 (572)
+|.|.....+...+
T Consensus 626 yk~~P~~~e~lcrlv 640 (1088)
T KOG4318|consen 626 YKPYPKDLEGLCRLV 640 (1088)
T ss_pred hcCChHHHHHHHHHH
Confidence 56665555444444
No 37
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=8.2e-11 Score=105.77 Aligned_cols=429 Identities=13% Similarity=0.092 Sum_probs=290.1
Q ss_pred HHHHhhcCChhhHHHHhccCCC---CChhhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcc-hHHHHHHHHcCCCCh
Q 046221 12 LSNYFKSGKIKEAENLFDEIPE---KNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSF-TMVGVLVAAAGLQNL 87 (572)
Q Consensus 12 ~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~g~~ 87 (572)
.+.=..++++..|+.+|++... .++..|--.+..-.+...+..|..++++.... -|... .|--.+..=-..|++
T Consensus 80 aqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi 157 (677)
T KOG1915|consen 80 AQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNI 157 (677)
T ss_pred HHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhccc
Confidence 3334456788899999998876 56778888888889999999999999998764 33322 222233333356899
Q ss_pred HHHHHHHHHHHHhcCCCCcccCCCCCCceeHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChH
Q 046221 88 ELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRA 167 (572)
Q Consensus 88 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 167 (572)
..|.++|+.-.... |+..+|++.|+.-.+.+.++.|..++++..- +.|+..+|..-.+.-.+.|...
T Consensus 158 ~gaRqiferW~~w~-----------P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~ 224 (677)
T KOG1915|consen 158 AGARQIFERWMEWE-----------PDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVA 224 (677)
T ss_pred HHHHHHHHHHHcCC-----------CcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHH
Confidence 99999999887654 7788999999999999999999999999876 4699999999888888999999
Q ss_pred HHHHHHHHHHHh-c-CCCChhHHhHHHHHHHhCCCHHHHHHHHhhcCC--C---CcccHHHHHHHHHccCCHHHHHHH--
Q 046221 168 LCELIHGLTIKL-G-LILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC--K---DVISWTRMMGLFVDFEYAGDALKI-- 238 (572)
Q Consensus 168 ~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~---~~~~~~~li~~~~~~~~~~~a~~~-- 238 (572)
.+..++...++. | -..+...+.+....-.++..++.|.-+|+-..+ | ....|..+...=-+.|+.....+.
T Consensus 225 ~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 225 LARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 999999888763 2 122334555555555666778888888765544 2 233444444444445555444433
Q ss_pred ------HHHHHhCCCCCCccchHHHHHHhcccCChHHHHHHHHHHHHhCCCCCcc-hHHHHHH--------HHHhcCChh
Q 046221 239 ------FREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELR-LSNSIIA--------MYSKCGDLD 303 (572)
Q Consensus 239 ------~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~--------~~~~~~~~~ 303 (572)
|+.+...+ +.|-.++--.++.-...|+.+...++|+.....-.+.... .|.-.|- .-....+++
T Consensus 305 ~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 33333332 3455666677777777889999999998887654322211 1222221 112456777
Q ss_pred HHHHHHhccCC---CCcchHHHH----HHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHH
Q 046221 304 SSRSVFNQITE---KSLVSWTAI----ISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLH 376 (572)
Q Consensus 304 ~a~~~~~~~~~---~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 376 (572)
.+.++|+...+ ....|+..+ ..--.++.+...|.+++.... |..|...+|..-+..-.+.++++....++
T Consensus 384 rtr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLY 460 (677)
T KOG1915|consen 384 RTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLY 460 (677)
T ss_pred HHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHH
Confidence 77777766553 233344333 333346677788888777764 66777778888888778888888888888
Q ss_pred HHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHcCCCCC----HhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 046221 377 GIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRD----VVSWNTIIYGYGVNGHGETALALYHKMTETGEV 452 (572)
Q Consensus 377 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~ 452 (572)
+...+.+ |-+..+|......-...|+.+.|..+|+-.-.+|. ...|.+.|..-...|.+++|..+|+++++. .
T Consensus 461 Ekfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t 537 (677)
T KOG1915|consen 461 EKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--T 537 (677)
T ss_pred HHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--c
Confidence 8877765 55667777777777777888888888887722232 344555555556678888888888888774 3
Q ss_pred CCHHHHHHHH
Q 046221 453 PDSSTYLSIL 462 (572)
Q Consensus 453 p~~~~~~~l~ 462 (572)
+-...|.+..
T Consensus 538 ~h~kvWisFA 547 (677)
T KOG1915|consen 538 QHVKVWISFA 547 (677)
T ss_pred ccchHHHhHH
Confidence 3333444433
No 38
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.62 E-value=1.6e-12 Score=125.28 Aligned_cols=242 Identities=12% Similarity=0.090 Sum_probs=142.8
Q ss_pred CChhhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCcccCCCCC
Q 046221 34 KNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNP 113 (572)
Q Consensus 34 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 113 (572)
||.++|..+|.-|+..|+.+.|- +|.-|.-...+-+...++.++.+....++.+.+. .|
T Consensus 23 PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------------------ep 81 (1088)
T KOG4318|consen 23 PNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------------------EP 81 (1088)
T ss_pred CchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC--------------------CC
Confidence 45555555555555555555555 5555555444444455555555555554444332 35
Q ss_pred CceeHHHHHHHHHhCCChHHHHHHHHH-HH-------hCCCCCCHhhHHHHHHHHhccCChHH--------HHHHHHHHH
Q 046221 114 YLVSCNAIVAGFINNKLFQQAVLLFNF-FR-------GSGLVPNAVTMLTVIRGCVALGSRAL--------CELIHGLTI 177 (572)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~~~a~~~~~~-m~-------~~~~~p~~~~~~~ll~~~~~~~~~~~--------a~~~~~~~~ 177 (572)
-..+|..|..+|...||... ++..++ |. ..|+..-..-+-..++++-. -..+. -+.++...+
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~-~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPH-SLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred chhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcc-cchhHHHHHHHHHHHHHHHHHH
Confidence 56688888888888888765 222222 22 12322222222222222211 11111 112223333
Q ss_pred HhcC-CCChhHHhH---HHHHHHh-CCCHHHHHHHHhhcCC-CCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCc
Q 046221 178 KLGL-ILDVSVNNS---VLDMYSC-LMDLDAAIQIFREMEC-KDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDT 251 (572)
Q Consensus 178 ~~~~-~~~~~~~~~---l~~~~~~-~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 251 (572)
+.+. .|...-++. ++.-... ...+++-..+.....+ +++.+|..++.+-..+|+.+.|..++.+|++.|++.+.
T Consensus 160 kll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~ 239 (1088)
T KOG4318|consen 160 KLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA 239 (1088)
T ss_pred HHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence 3321 121111111 1222221 2234444444444444 88999999999999999999999999999999999999
Q ss_pred cchHHHHHHhcccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCC
Q 046221 252 VALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGD 301 (572)
Q Consensus 252 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 301 (572)
.-|-.++-+ .++...++.+++-|...|+.|+..|+...+-.+.+.|.
T Consensus 240 HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 240 HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 888888765 88899999999999999999999999888777777554
No 39
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=1.1e-11 Score=111.81 Aligned_cols=403 Identities=10% Similarity=-0.016 Sum_probs=235.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCC-hhHHhHHHHHH
Q 046221 118 CNAIVAGFINNKLFQQAVLLFNFFRGSGLVPN-AVTMLTVIRGCVALGSRALCELIHGLTIKLGLILD-VSVNNSVLDMY 195 (572)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 195 (572)
+-....-|.++|.+++|++.|.+..+. .|| ...|....-+|...|+++++.+--...++. .|+ +..+..-..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHH
Confidence 334556688999999999999999884 778 677788888889999999988877776664 343 34555666777
Q ss_pred HhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHccCCHHHHHHHHH--------HHHh-CC--CCCCccchHHHHHHhccc
Q 046221 196 SCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFR--------EMRK-SR--IICDTVALLNLISVNAIL 264 (572)
Q Consensus 196 ~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~--------~m~~-~~--~~p~~~~~~~ll~~~~~~ 264 (572)
-..|++++|+.-. +-.++...+....-.--+.+++. +-.+ .+ +.|+.....+....+-..
T Consensus 194 E~lg~~~eal~D~---------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~ 264 (606)
T KOG0547|consen 194 EQLGKFDEALFDV---------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD 264 (606)
T ss_pred HhhccHHHHHHhh---------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc
Confidence 7888888776322 12222222222222222222222 2122 11 234333333333222110
Q ss_pred CChHHHHHHHHHHHHhCCCCCcchHHHHHHH----HHhc-CChhHHHHHHhccC--------CC--Cc------chHHHH
Q 046221 265 GDLKRGKQLHAQVVLGGLQSELRLSNSIIAM----YSKC-GDLDSSRSVFNQIT--------EK--SL------VSWTAI 323 (572)
Q Consensus 265 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~-~~~~~a~~~~~~~~--------~~--~~------~~~~~l 323 (572)
- ......+.......+..+ +... ..++.|...+.+-. .. |. .+....
T Consensus 265 ~------------~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~ 332 (606)
T KOG0547|consen 265 P------------KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLR 332 (606)
T ss_pred c------------cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHh
Confidence 0 000000000011111111 1110 12222222222111 01 10 011111
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCC
Q 046221 324 ISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403 (572)
Q Consensus 324 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 403 (572)
..-+.-.|+.-.|..-|+.......-.++ .|..+...|....+.++....|+...+.+ +-++.+|..-.+++.-.++
T Consensus 333 gtF~fL~g~~~~a~~d~~~~I~l~~~~~~--lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q 409 (606)
T KOG0547|consen 333 GTFHFLKGDSLGAQEDFDAAIKLDPAFNS--LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQ 409 (606)
T ss_pred hhhhhhcCCchhhhhhHHHHHhcCcccch--HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHH
Confidence 11233457777788888777622222222 26666677888888888888888887765 5567777777788888888
Q ss_pred hHHHHHHHHHc-CCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHh
Q 046221 404 VDLAYIVFEEM-GFLRD-VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQM 481 (572)
Q Consensus 404 ~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 481 (572)
+++|..-|++. .+.|. ...|--+..+..+.+++++++..|++.++. ++--+..|+.....+...++++.|.+.|+.+
T Consensus 410 ~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~a 488 (606)
T KOG0547|consen 410 YEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKA 488 (606)
T ss_pred HHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence 88888888887 55443 555666666666778888888888888875 4444588888888888888888888888888
Q ss_pred HHhcCC------CCChhHHHHHHHHHHhhCChhHHHHHHHhccC-CCChH-HHHHHHHHHhhhcCCHHHHHHHHHHHH
Q 046221 482 IEENKV------KPSQEHYGCVVDLLARAGCLSDASGLAGKLLE-GMGPN-IWRALLSGCVLHVGRFQDAEALRSGSQ 551 (572)
Q Consensus 482 ~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~-~~~~l~~~~~~~~g~~~~A~~~~~~m~ 551 (572)
++-... .+.+.+...++..-.+ +++..|..+++++.+ +|... .|..|...-.+. |+.++|+++|++..
T Consensus 489 i~LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~-~~i~eAielFEksa 564 (606)
T KOG0547|consen 489 IELEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQR-GKIDEAIELFEKSA 564 (606)
T ss_pred HhhccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHH-hhHHHHHHHHHHHH
Confidence 753211 1112222233333233 788888888888887 44433 566777666666 88888888888753
No 40
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.58 E-value=2.2e-14 Score=130.78 Aligned_cols=256 Identities=15% Similarity=0.126 Sum_probs=76.1
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCccchHH-HHHHhcccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCC
Q 046221 223 MGLFVDFEYAGDALKIFREMRKSRIICDTVALLN-LISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGD 301 (572)
Q Consensus 223 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 301 (572)
...+.+.|++++|++++++......+|+...|.. +...+-..++.+.|...++.+...+.. ++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 4445555666666666644333321233333332 222333445556666666555554321 33344444444 45555
Q ss_pred hhHHHHHHhccCC--CCcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHH
Q 046221 302 LDSSRSVFNQITE--KSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIA 379 (572)
Q Consensus 302 ~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 379 (572)
+++|.+++...-+ ++...+..++..+.+.++++++..+++.+......
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~------------------------------ 142 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAA------------------------------ 142 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T--------------------------------
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCC------------------------------
Confidence 5555555544322 23334444555555555555555555555422222
Q ss_pred HHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc-CCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHH
Q 046221 380 FEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFLR-DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457 (572)
Q Consensus 380 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~ 457 (572)
+.+...|..+...+.+.|+.++|++.+++. ...| +......++..+...|+.+++..+++...+.. +.|...
T Consensus 143 -----~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~ 216 (280)
T PF13429_consen 143 -----PDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDL 216 (280)
T ss_dssp ------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCH
T ss_pred -----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHH
Confidence 334445555555666666666666666665 3334 35556666666666666666666666655542 334455
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhcc
Q 046221 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518 (572)
Q Consensus 458 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 518 (572)
+..+..++...|+.++|+.+|++..+.+ +.|+.....+.+++...|+.++|.++.+++.
T Consensus 217 ~~~la~~~~~lg~~~~Al~~~~~~~~~~--p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 217 WDALAAAYLQLGRYEEALEYLEKALKLN--PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp CHHHHHHHHHHT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHT----------------
T ss_pred HHHHHHHhcccccccccccccccccccc--ccccccccccccccccccccccccccccccc
Confidence 5566666666677777777776665433 4456666666666777777777766665543
No 41
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.58 E-value=1.6e-14 Score=131.66 Aligned_cols=251 Identities=16% Similarity=0.168 Sum_probs=109.1
Q ss_pred HHHHHHhcCChhHHHHHHhcc-CC----CCcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhccc
Q 046221 292 IIAMYSKCGDLDSSRSVFNQI-TE----KSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGEL 366 (572)
Q Consensus 292 l~~~~~~~~~~~~a~~~~~~~-~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 366 (572)
+...+.+.|++++|.+++.+. .. .+..-|..+.......++++.|...++++. ..+ +-+...+..++.. ...
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~-~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLL-ASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc-ccccccccccccc-ccc
Confidence 344555556666666666322 11 123334444444555666666666666665 221 1133344444444 566
Q ss_pred ccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc----CCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 046221 367 AALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM----GFLRDVVSWNTIIYGYGVNGHGETALAL 442 (572)
Q Consensus 367 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 442 (572)
++++.|..++....+. .+++..+..++..+.+.++++++.++++.+ ..+.+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6666666666554443 245566677888889999999999999986 3446778888999999999999999999
Q ss_pred HHHHHhcCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC-C
Q 046221 443 YHKMTETGEVPD-SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE-G 520 (572)
Q Consensus 443 ~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~ 520 (572)
+++..+ ..|+ ......++..+...|+.+++.++++...+.. +.|+..+..+..+|...|++++|..++++... .
T Consensus 169 ~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 169 YRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 999999 4675 6788899999999999999999999886543 56777888999999999999999999999887 5
Q ss_pred C-ChHHHHHHHHHHhhhcCCHHHHHHHHHHHHh
Q 046221 521 M-GPNIWRALLSGCVLHVGRFQDAEALRSGSQK 552 (572)
Q Consensus 521 ~-~~~~~~~l~~~~~~~~g~~~~A~~~~~~m~~ 552 (572)
| |+.....+..++... |+.++|.++.++..+
T Consensus 245 p~d~~~~~~~a~~l~~~-g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQA-GRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccc-ccccccccccccccc
Confidence 5 566666666666666 999999999887654
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.58 E-value=1.3e-11 Score=117.78 Aligned_cols=284 Identities=11% Similarity=0.000 Sum_probs=161.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCccchHHHHHHhcccCChHHHHHHHHHHHHhCCCCCcchHH--HHHHHHHhcCChhHHH
Q 046221 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSN--SIIAMYSKCGDLDSSR 306 (572)
Q Consensus 229 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~ 306 (572)
.|+++.|.+.+....+..-.| ...|.....+....|+++.+...+.++.+. .|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 688888887777654432111 122333344446778888888888887654 33433222 3356677777888777
Q ss_pred HHHhccCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhc
Q 046221 307 SVFNQITEK---SLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG 383 (572)
Q Consensus 307 ~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 383 (572)
..++.+.+. ++.....+...|.+.|++++|.+++..+.+.....+.. ...+-
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~--~~~l~----------------------- 228 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEH--RAMLE----------------------- 228 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHH--HHHHH-----------------------
Confidence 777776642 34456667777777777777777777776322222111 11000
Q ss_pred CCCchhHHHHHHHHhhhcCChHHHHHHHHHc--CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHH
Q 046221 384 FPRYRSVQNCLISSYSKCGNVDLAYIVFEEM--GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI 461 (572)
Q Consensus 384 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l 461 (572)
...|..++.......+.+...++++.+ ..+.++.....+...+...|+.++|.+++++..+. .|+.... +
T Consensus 229 ----~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~ 300 (398)
T PRK10747 229 ----QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--L 300 (398)
T ss_pred ----HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--H
Confidence 001111222222333445555555555 23335556666666667777777777777666662 4444221 2
Q ss_pred HHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC-CCChHHHHHHHHHHhhhcCCH
Q 046221 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE-GMGPNIWRALLSGCVLHVGRF 540 (572)
Q Consensus 462 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~g~~ 540 (572)
+.+....++.+++++..+...+.+ +-|...+..+...+.+.|++++|.+.|+++.+ .|+...+..+...+... |+.
T Consensus 301 l~~~l~~~~~~~al~~~e~~lk~~--P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~-g~~ 377 (398)
T PRK10747 301 LIPRLKTNNPEQLEKVLRQQIKQH--GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRL-HKP 377 (398)
T ss_pred HHhhccCCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CCH
Confidence 233334466677777776665443 34444566666777777777777777777666 56666666555555544 777
Q ss_pred HHHHHHHHHHH
Q 046221 541 QDAEALRSGSQ 551 (572)
Q Consensus 541 ~~A~~~~~~m~ 551 (572)
++|.+++++-.
T Consensus 378 ~~A~~~~~~~l 388 (398)
T PRK10747 378 EEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHH
Confidence 77776666553
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=9.5e-11 Score=105.14 Aligned_cols=286 Identities=11% Similarity=0.087 Sum_probs=144.5
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCccchHHHHHHhcccCChHHHHHHHHHHHHhCC--CCCcchHHHHHHHHHhcCChh
Q 046221 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL--QSELRLSNSIIAMYSKCGDLD 303 (572)
Q Consensus 226 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 303 (572)
+-...+.+++..-.......|.+-+...-+....+.-...|+++|+.+|+++.+... -.|..+|..++-.--...++.
T Consensus 237 ~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs 316 (559)
T KOG1155|consen 237 YQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLS 316 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHH
Confidence 333344555555555555555443333333333344455666666666666665532 123344444332211111111
Q ss_pred H-HHHHHhccCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHh
Q 046221 304 S-SRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEA 382 (572)
Q Consensus 304 ~-a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 382 (572)
- |..++ .+.+--+.|...+.+-|.-.++.++|...|++..+. .+-....++.+.+-|...++...|.+-++..++.
T Consensus 317 ~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi 393 (559)
T KOG1155|consen 317 YLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI 393 (559)
T ss_pred HHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc
Confidence 1 11111 111222344455555555666666666666666411 1222334445555566666666666666666654
Q ss_pred cCCCchhHHHHHHHHhhhcCChHHHHHHHHHc-CCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHH
Q 046221 383 GFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFLR-DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460 (572)
Q Consensus 383 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ 460 (572)
. |.|-..|-.|.++|.-.+...-|+-.|++. ..+| |...|.+|..+|.+.++.++|++.|......| ..+...+..
T Consensus 394 ~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~ 471 (559)
T KOG1155|consen 394 N-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVR 471 (559)
T ss_pred C-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHH
Confidence 4 445556666666666666666666666666 3333 46666666666666666666666666666543 224456666
Q ss_pred HHHHHhccCChHHHHHHHHHhHHhc---C-CCC-ChhHHHHHHHHHHhhCChhHHHHHHHh
Q 046221 461 ILNACGHAGLTNDGLVIFNQMIEEN---K-VKP-SQEHYGCVVDLLARAGCLSDASGLAGK 516 (572)
Q Consensus 461 l~~~~~~~g~~~~a~~~~~~~~~~~---~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 516 (572)
|...|-+.++..+|.+.|++.++.. | +.| ....-.-|...+.+.+++++|..+...
T Consensus 472 LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 472 LAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 6666666666666666666555421 1 111 111222244445555566655544433
No 44
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.57 E-value=5.4e-10 Score=104.41 Aligned_cols=516 Identities=13% Similarity=0.114 Sum_probs=312.7
Q ss_pred CcchhhHHHHHhhcCChhhHHHHhccCCC-----CChhhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHH
Q 046221 5 PYNSSKLLSNYFKSGKIKEAENLFDEIPE-----KNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLV 79 (572)
Q Consensus 5 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 79 (572)
+..|-.-+..+.++|++...+..|++... .....|...+......+-++-++.+|++-++- ++..-.-.+.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 34566667888899999999999987654 24457899999999999999999999998853 3344677788
Q ss_pred HHcCCCChHHHHHHHHHHHHhcCCCCcccCC-CCCCceeHHHHHHHHHhCCChHHH---HHHHHHHHhCCCCCCHh--hH
Q 046221 80 AAAGLQNLELARSIHGLMVKFGLESDLFEGL-KNPYLVSCNAIVAGFINNKLFQQA---VLLFNFFRGSGLVPNAV--TM 153 (572)
Q Consensus 80 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a---~~~~~~m~~~~~~p~~~--~~ 153 (572)
.+++.+++++|.+.+..++.... |.+. .+.+...|+.+-...+++-+.-.. ..+++.+... -+|.. .|
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~----f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw 251 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDE----FVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLW 251 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchh----hhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHH
Confidence 88999999999999887764322 1111 123344566666655555433222 2333333322 33433 46
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHHHHHHhC----------------C------CHHHHHHHHhhc
Q 046221 154 LTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCL----------------M------DLDAAIQIFREM 211 (572)
Q Consensus 154 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~------~~~~a~~~~~~~ 211 (572)
+.|..-|.+.|.+++|..++++.+.. ..+..-|+.+.++|+.- + +++-...-|+.+
T Consensus 252 ~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~l 329 (835)
T KOG2047|consen 252 CSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESL 329 (835)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHH
Confidence 67777778888888888888776664 23333344444444321 1 122233333333
Q ss_pred CCC---------------CcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCc------cchHHHHHHhcccCChHHH
Q 046221 212 ECK---------------DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDT------VALLNLISVNAILGDLKRG 270 (572)
Q Consensus 212 ~~~---------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~------~~~~~ll~~~~~~~~~~~a 270 (572)
... ++..|..-+. +..|+..+-...|.+..+. +.|.. ..+..+.+.|-..|+++.|
T Consensus 330 m~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~a 406 (835)
T KOG2047|consen 330 MNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDA 406 (835)
T ss_pred HhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHH
Confidence 221 2223332222 3356677777778777665 34422 2456677778888999999
Q ss_pred HHHHHHHHHhCCCCC---cchHHHHHHHHHhcCChhHHHHHHhccCC-C--------------------CcchHHHHHHH
Q 046221 271 KQLHAQVVLGGLQSE---LRLSNSIIAMYSKCGDLDSSRSVFNQITE-K--------------------SLVSWTAIISG 326 (572)
Q Consensus 271 ~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~--------------------~~~~~~~l~~~ 326 (572)
..+|+...+...+.- ..+|..-..+=.+..+++.|.++.+.... | +...|...+..
T Consensus 407 Rvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dl 486 (835)
T KOG2047|consen 407 RVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADL 486 (835)
T ss_pred HHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHH
Confidence 999998887654322 23455555555667788888888877642 1 22356666666
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCc-hhHHHHHHHHhhh---cC
Q 046221 327 YVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRY-RSVQNCLISSYSK---CG 402 (572)
Q Consensus 327 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~g 402 (572)
--..|-++....+++++.+..-..|....- ....+....-++++.+++++-+..=-.|+ ..+|+..+.-+.+ ..
T Consensus 487 eEs~gtfestk~vYdriidLriaTPqii~N--yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~ 564 (835)
T KOG2047|consen 487 EESLGTFESTKAVYDRIIDLRIATPQIIIN--YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGT 564 (835)
T ss_pred HHHhccHHHHHHHHHHHHHHhcCCHHHHHH--HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCC
Confidence 666778888888888887555455443321 11223344556777777654333222233 3456666655543 24
Q ss_pred ChHHHHHHHHHc--CCCCCHhHHHHHHHH--HHhcCChHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHhccCChHHHHH
Q 046221 403 NVDLAYIVFEEM--GFLRDVVSWNTIIYG--YGVNGHGETALALYHKMTETGEVPDS--STYLSILNACGHAGLTNDGLV 476 (572)
Q Consensus 403 ~~~~A~~~~~~~--~~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~a~~ 476 (572)
.++.|..+|++. +.+|...-+-.|+.+ --+.|-...|+.+|++.... +.+.. ..|++.|.-....=-+.....
T Consensus 565 klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~ 643 (835)
T KOG2047|consen 565 KLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTRE 643 (835)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHH
Confidence 688999999988 665442222222222 22357778888999887664 55543 678887765444444556778
Q ss_pred HHHHhHHhcCCCCChhHHH---HHHHHHHhhCChhHHHHHHHhccC--CCChH--HHHHHHHHHhhhcCCHHH
Q 046221 477 IFNQMIEENKVKPSQEHYG---CVVDLLARAGCLSDASGLAGKLLE--GMGPN--IWRALLSGCVLHVGRFQD 542 (572)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~--~~~~l~~~~~~~~g~~~~ 542 (572)
+|+++++.. |+...-. -..+.=.+.|.++.|..++....+ +|... .|..-=.--.+| |+-+-
T Consensus 644 iYekaIe~L---p~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrH-GnedT 712 (835)
T KOG2047|consen 644 IYEKAIESL---PDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRH-GNEDT 712 (835)
T ss_pred HHHHHHHhC---ChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhc-CCHHH
Confidence 888888653 5554333 333455688999999999887766 44433 355443333455 77433
No 45
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.56 E-value=3.3e-12 Score=121.87 Aligned_cols=277 Identities=9% Similarity=-0.055 Sum_probs=201.4
Q ss_pred CCChHHHHHHHHHHHHcCCCCCcch-HHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCcccCCCCCCceeHH--HHHHHH
Q 046221 49 NGFHEKSMKAFSHMMLSGLLPNSFT-MVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCN--AIVAGF 125 (572)
Q Consensus 49 ~~~~~~a~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~ 125 (572)
.|+++.|.+.+....+.. +++.. |.....+..+.|+++.|...+.++.+..+ +..... .....+
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~-----------~~~~~~~l~~a~l~ 163 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELAD-----------NDQLPVEITRVRIQ 163 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-----------cchHHHHHHHHHHH
Confidence 588888887777655432 12222 22223333578888888888888876542 222222 335677
Q ss_pred HhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCh-------hHHhHHHHHHHhC
Q 046221 126 INNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDV-------SVNNSVLDMYSCL 198 (572)
Q Consensus 126 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~ 198 (572)
...|+++.|...++++.+.. +-+...+..+...+.+.|+++.+..++..+.+.+..++. .+|..++......
T Consensus 164 l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~ 242 (398)
T PRK10747 164 LARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMAD 242 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 78888888888888887764 225566777778888888888888888888877644322 2344455555555
Q ss_pred CCHHHHHHHHhhcCC---CCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCccchHHHHHHhcccCChHHHHHHHH
Q 046221 199 MDLDAAIQIFREMEC---KDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA 275 (572)
Q Consensus 199 ~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 275 (572)
.+.+...++++.++. .++.....+...+...|+.++|.+.+.+..+. +||.. ..++.+....++.+.+.+..+
T Consensus 243 ~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e 318 (398)
T PRK10747 243 QGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLR 318 (398)
T ss_pred cCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHH
Confidence 667788888888765 47778888999999999999999999988874 44442 223444455689999999999
Q ss_pred HHHHhCCCCCcchHHHHHHHHHhcCChhHHHHHHhccCC--CCcchHHHHHHHHHHcCChHHHHHHHHHHH
Q 046221 276 QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE--KSLVSWTAIISGYVQNGCAREALNQFIKMR 344 (572)
Q Consensus 276 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 344 (572)
...+.. +.|......+...+.+.+++++|.+.|+...+ |+...+..+...+.+.|+.++|.+++++-.
T Consensus 319 ~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 319 QQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888765 56667788899999999999999999999874 677778889999999999999999998875
No 46
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.56 E-value=1.3e-11 Score=105.46 Aligned_cols=300 Identities=15% Similarity=0.121 Sum_probs=194.3
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCccchHHHHHHhcccCChHHHHHHHHHHHHhCCCCC---cchHHHHHHHHHhcCChhH
Q 046221 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSE---LRLSNSIIAMYSKCGDLDS 304 (572)
Q Consensus 228 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~ 304 (572)
-++++++|.++|-+|.+.+ +-+..+-.+|-+.+.+.|..+.|+++...+.++.--+. ....-.|..-|...|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3567788888888887631 12223334555566666777777777766665321111 1122334445555666666
Q ss_pred HHHHHhccCCCCc---chHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHH
Q 046221 305 SRSVFNQITEKSL---VSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFE 381 (572)
Q Consensus 305 a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 381 (572)
|+.+|..+.+.+. .....|+..|....++++|++.-+++. +
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~------------------------------------k 169 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLV------------------------------------K 169 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHH------------------------------------H
Confidence 6666666554222 234445555556666666666555554 3
Q ss_pred hcCCCc----hhHHHHHHHHhhhcCChHHHHHHHHHc-CCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH
Q 046221 382 AGFPRY----RSVQNCLISSYSKCGNVDLAYIVFEEM-GFLRD-VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455 (572)
Q Consensus 382 ~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~ 455 (572)
.+-.+. ...|--+...+....+++.|..++.+. ...|. +..--.+...+...|++++|.+.|+...+.+..--+
T Consensus 170 ~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~ 249 (389)
T COG2956 170 LGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLS 249 (389)
T ss_pred cCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHH
Confidence 322221 123344555566677888899998888 33344 334445667788999999999999999996433334
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHh-ccCCCChHHHHHHHHHHh
Q 046221 456 STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK-LLEGMGPNIWRALLSGCV 534 (572)
Q Consensus 456 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~l~~~~~ 534 (572)
.+...|..+|...|+.++....+..+++.. +.......+.+.-....-.+.|...+.+ +..+|+...+..++..-.
T Consensus 250 evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~---~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l 326 (389)
T COG2956 250 EVLEMLYECYAQLGKPAEGLNFLRRAMETN---TGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHL 326 (389)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcc---CCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhh
Confidence 778899999999999999999999998543 5555555565555555556666655554 555999999999888654
Q ss_pred hh--cCCHHHHHHHHHHHHhCCCCCCCceeEEEcC
Q 046221 535 LH--VGRFQDAEALRSGSQKKGIIKIPGISFLNST 567 (572)
Q Consensus 535 ~~--~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~ 567 (572)
.. .|++++.+..+..|....++..|.|.--+-+
T Consensus 327 ~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CG 361 (389)
T COG2956 327 ADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCG 361 (389)
T ss_pred ccccccchhhhHHHHHHHHHHHHhhcCCceecccC
Confidence 32 5779999999999999998888876544433
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=3.4e-11 Score=107.94 Aligned_cols=354 Identities=16% Similarity=0.137 Sum_probs=250.6
Q ss_pred CCChhHHhHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCccchH--HHHH
Q 046221 182 ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALL--NLIS 259 (572)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--~ll~ 259 (572)
..|...+-.....+.+.|..+.|+..|......-+..|.+-+....-..+.+.+..+.. |.+.|...+. .+..
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~-----~l~~~~h~M~~~F~~~ 235 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVV-----GLPSDMHWMKKFFLKK 235 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHh-----cCcccchHHHHHHHHH
Confidence 44444444444556677888888888887766444444444433332223332222211 2222222221 2334
Q ss_pred HhcccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHHHHHHhccCCCCc------chHHHHHHHHHHcCCh
Q 046221 260 VNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSL------VSWTAIISGYVQNGCA 333 (572)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~l~~~~~~~~~~ 333 (572)
++-.....+++.+-.......|++.+...-+....+.-...++|+|+.+|+++.+.|+ .+|+.++ |.++.+.
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~s 313 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhH
Confidence 5556667888888888888889888887777777788888999999999999987654 4666655 3333221
Q ss_pred HHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHH
Q 046221 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEE 413 (572)
Q Consensus 334 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 413 (572)
.+..+-+-. ..-.+-.+.|...+..-|+-.++.++|..+|++..+.+ +.....|+.+.+-|....+...|.+-++.
T Consensus 314 --kLs~LA~~v-~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 314 --KLSYLAQNV-SNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred --HHHHHHHHH-HHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 222222221 22233445577778888888999999999999999876 55677889999999999999999999999
Q ss_pred c-CCC-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC
Q 046221 414 M-GFL-RDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPS 490 (572)
Q Consensus 414 ~-~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 490 (572)
. .+. .|-..|-.|.++|.-.+-+.-|+-.|++..+ ++| |+..|..|..+|.+.++.++|++.|..++.-+ ..+
T Consensus 390 Avdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~--dte 465 (559)
T KOG1155|consen 390 AVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG--DTE 465 (559)
T ss_pred HHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc--ccc
Confidence 8 443 5789999999999999999999999999999 567 77999999999999999999999999998544 345
Q ss_pred hhHHHHHHHHHHhhCChhHHHHHHHhccC------CCChHHHHH--HHHHHhhhcCCHHHHHHHHHHH
Q 046221 491 QEHYGCVVDLLARAGCLSDASGLAGKLLE------GMGPNIWRA--LLSGCVLHVGRFQDAEALRSGS 550 (572)
Q Consensus 491 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~--l~~~~~~~~g~~~~A~~~~~~m 550 (572)
...+..|.+.|-+.++.++|...+++..+ ..++.+..+ .+..+....+++++|.....+.
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 57899999999999999999999988665 234433332 2333333347787776655444
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.55 E-value=1.3e-11 Score=118.45 Aligned_cols=291 Identities=11% Similarity=0.029 Sum_probs=153.8
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCccc-hHHHHHHhcccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHH
Q 046221 227 VDFEYAGDALKIFREMRKSRIICDTVA-LLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSS 305 (572)
Q Consensus 227 ~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 305 (572)
...|+++.|.+.+.+..+. .|++.. +.....+....|+.+.+...+....+....+...+.......+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 3567888888887776554 344332 2333455566677777777777765543222222223345556666666666
Q ss_pred HHHHhccCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHh
Q 046221 306 RSVFNQITEK---SLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEA 382 (572)
Q Consensus 306 ~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 382 (572)
...++.+.+. +...+..+...+.+.|++++|.+.+..+. +.+.. +...+..+-.
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~-k~~~~-~~~~~~~l~~--------------------- 229 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMA-KAGLF-DDEEFADLEQ--------------------- 229 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HcCCC-CHHHHHHHHH---------------------
Confidence 6666666532 33455556666666666666666666665 32221 1111110000
Q ss_pred cCCCchhHHHHHHHHhhhcCChHHHHHHHHHcC--CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHH---
Q 046221 383 GFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMG--FLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST--- 457 (572)
Q Consensus 383 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~--- 457 (572)
..+..++..-......+...+.++..+ .+.+...+..+...+...|+.++|.+++++..+. .||...
T Consensus 230 ------~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~ 301 (409)
T TIGR00540 230 ------KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISL 301 (409)
T ss_pred ------HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchh
Confidence 000000100011111222333333331 1135566666667777777777777777777763 344331
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHh--ccC-CCChHHHHHHHHHHh
Q 046221 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK--LLE-GMGPNIWRALLSGCV 534 (572)
Q Consensus 458 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~-~~~~~~~~~l~~~~~ 534 (572)
...........++.+.+.+.++...+...-.|+.....++...+.+.|++++|.+.|++ ..+ .|++..+..+...+.
T Consensus 302 ~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~ 381 (409)
T TIGR00540 302 PLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFD 381 (409)
T ss_pred HHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHH
Confidence 11111222344666677777776665442222214555677777777777777777773 433 667666666666665
Q ss_pred hhcCCHHHHHHHHHHHH
Q 046221 535 LHVGRFQDAEALRSGSQ 551 (572)
Q Consensus 535 ~~~g~~~~A~~~~~~m~ 551 (572)
.. |+.++|.+++++-.
T Consensus 382 ~~-g~~~~A~~~~~~~l 397 (409)
T TIGR00540 382 QA-GDKAEAAAMRQDSL 397 (409)
T ss_pred Hc-CCHHHHHHHHHHHH
Confidence 55 77777777777643
No 49
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=1.3e-12 Score=122.38 Aligned_cols=279 Identities=13% Similarity=0.038 Sum_probs=213.1
Q ss_pred ChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHHHHHHhccCCC------CcchHHHHHHHHHHcCChHHHHHH
Q 046221 266 DLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK------SLVSWTAIISGYVQNGCAREALNQ 339 (572)
Q Consensus 266 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~ 339 (572)
+..+|...|..+..+ ...+..+...+..+|...+++++|.++|+.+.+. +...|.+.+--+.+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 456777777774333 3444467778889999999999999999988753 45677776654432 223333
Q ss_pred HHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc-CCCC
Q 046221 340 FIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFLR 418 (572)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~ 418 (572)
+.+-. ....+-.+.+|.++..+++-+++.+.|+..|++..... +....+|+.+..-+.....+|.|...|+.. ++.|
T Consensus 409 Laq~L-i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDL-IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHH-HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 33332 34455677899999999999999999999999887654 336788888888888899999999999988 5434
Q ss_pred C-HhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHH
Q 046221 419 D-VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD-SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGC 496 (572)
Q Consensus 419 ~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 496 (572)
. ...|-.+...|.+.++++.|+-.|+++.+ +.|. .+....+...+.+.|+.|+|++++++++... +-|+..-..
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld--~kn~l~~~~ 562 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD--PKNPLCKYH 562 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC--CCCchhHHH
Confidence 3 45566677889999999999999999998 7784 4778888888999999999999999997433 344445555
Q ss_pred HHHHHHhhCChhHHHHHHHhccC-CCC-hHHHHHHHHHHhhhcCCHHHHHHHHHHHHhCCCC
Q 046221 497 VVDLLARAGCLSDASGLAGKLLE-GMG-PNIWRALLSGCVLHVGRFQDAEALRSGSQKKGII 556 (572)
Q Consensus 497 l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~~g~~~~A~~~~~~m~~~~~~ 556 (572)
-+..+...+++++|+..++++++ -|+ ..++..+...|.+- |+.+.|+..|.=+.+-.++
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~-~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRL-GNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHH-ccchHHHHhhHHHhcCCCc
Confidence 66778889999999999999988 454 45566677777666 9999999999888877665
No 50
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.54 E-value=4.9e-11 Score=103.17 Aligned_cols=449 Identities=9% Similarity=0.010 Sum_probs=207.2
Q ss_pred HHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCcccCCCCCCceeHHHHHH
Q 046221 44 HGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVA 123 (572)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 123 (572)
.-+...+++..|+.+++--...+-.....+-.-+..++...|++++|...+..+.+..- ++...+-.|.-
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~----------~~~el~vnLAc 99 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDD----------APAELGVNLAC 99 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCC----------CCcccchhHHH
Confidence 34445556666666666544322111111112223334466777777666666555321 44555555655
Q ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHHHHHHhCCCHHH
Q 046221 124 GFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDA 203 (572)
Q Consensus 124 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (572)
.+.-.|.+.+|..+-....+ +.---..+++..-+.++-++...+.+.+... ...--+|.......-.+.+
T Consensus 100 c~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQe 169 (557)
T KOG3785|consen 100 CKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQE 169 (557)
T ss_pred HHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHH
Confidence 55566666666655544221 1222223333334455555444444433321 1111223333223335677
Q ss_pred HHHHHhhcCC--CCcccHHH-HHHHHHccCCHHHHHHHHHHHHhCCCCCCc-cchHHHHHHhcccCChHHHHHHHHHHHH
Q 046221 204 AIQIFREMEC--KDVISWTR-MMGLFVDFEYAGDALKIFREMRKSRIICDT-VALLNLISVNAILGDLKRGKQLHAQVVL 279 (572)
Q Consensus 204 a~~~~~~~~~--~~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 279 (572)
|++++.++.. |+-...|. +.-+|.+..-++-+.+++.-..+. .||+ ...+.......+.=+-..|+.-.+.+.+
T Consensus 170 AIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~lad 247 (557)
T KOG3785|consen 170 AIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELAD 247 (557)
T ss_pred HHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHh
Confidence 7777777765 33334443 334556666677677776666554 2333 2333322222333222233333333333
Q ss_pred hCCCCCcchHHHHHHHHHhc-----CChhHHHHHHhccCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHh
Q 046221 280 GGLQSELRLSNSIIAMYSKC-----GDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSI 354 (572)
Q Consensus 280 ~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 354 (572)
.+-.. -..+.-+++. .+-+.|.+++-.+.+.=+.+--.++--|.+.++.++|..+.+++. +..|-..
T Consensus 248 N~~~~-----~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~---PttP~Ey 319 (557)
T KOG3785|consen 248 NIDQE-----YPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLD---PTTPYEY 319 (557)
T ss_pred ccccc-----chhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcC---CCChHHH
Confidence 22110 0112222222 123444444443332222222333444566666666666655542 3333333
Q ss_pred HHHHHHHH-----hcccccHHHHHHHHHHHHHhcCCCch-hHHHHHHHHhhhcCChHHHHHHHHHc---CCCCCHhHHHH
Q 046221 355 TLVSILTA-----SGELAALEICLQLHGIAFEAGFPRYR-SVQNCLISSYSKCGNVDLAYIVFEEM---GFLRDVVSWNT 425 (572)
Q Consensus 355 ~~~~ll~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~ 425 (572)
....+..+ .........|.+.|+..-+.+..-|. .--.++...+.-..++++.+-.++.+ -...|...+ .
T Consensus 320 ilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N 398 (557)
T KOG3785|consen 320 ILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-N 398 (557)
T ss_pred HHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-H
Confidence 33332222 12223445555555555444433221 12233444455555666666666655 111222222 3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHH-HHHHHHHHhh
Q 046221 426 IIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY-GCVVDLLARA 504 (572)
Q Consensus 426 l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~ 504 (572)
+.++++..|++.+|+++|-++....++.+..-...|.++|.+.+++.-|+.++-.+ + -+.+..+. ..+..-|.++
T Consensus 399 ~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~-~---t~~e~fsLLqlIAn~CYk~ 474 (557)
T KOG3785|consen 399 LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT-N---TPSERFSLLQLIANDCYKA 474 (557)
T ss_pred HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc-C---CchhHHHHHHHHHHHHHHH
Confidence 55666666777777777655554333323333334455666777777666655433 1 12222222 2333455666
Q ss_pred CChhHHHHHHHhccC-CCChHHHH
Q 046221 505 GCLSDASGLAGKLLE-GMGPNIWR 527 (572)
Q Consensus 505 g~~~~A~~~~~~~~~-~~~~~~~~ 527 (572)
+.+--|-+.|+.+.. +|++.-|.
T Consensus 475 ~eFyyaaKAFd~lE~lDP~pEnWe 498 (557)
T KOG3785|consen 475 NEFYYAAKAFDELEILDPTPENWE 498 (557)
T ss_pred HHHHHHHHhhhHHHccCCCccccC
Confidence 666666666666554 66666555
No 51
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.53 E-value=1.6e-11 Score=117.82 Aligned_cols=285 Identities=10% Similarity=0.047 Sum_probs=196.3
Q ss_pred HHhCCCHHHHHHHHhhcCC--CCc-ccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcc--chHHHHHHhcccCChHH
Q 046221 195 YSCLMDLDAAIQIFREMEC--KDV-ISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTV--ALLNLISVNAILGDLKR 269 (572)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~ 269 (572)
....|+++.|.+.+.+..+ |+. ..+-.......+.|+++.|.+.+.+..+. .|+.. ........+...|+++.
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHH
Confidence 3567999999999988765 333 23444567788889999999999998765 35554 23334677788999999
Q ss_pred HHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHHHHHHhccCCCCc---chHHHHH-HH---HHHcCChHHHHHHHHH
Q 046221 270 GKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSL---VSWTAII-SG---YVQNGCAREALNQFIK 342 (572)
Q Consensus 270 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~-~~---~~~~~~~~~a~~~~~~ 342 (572)
|...++.+.+.. +.+..+...+...+...|++++|.+.+..+.+..+ ..+..+- .+ ....+..++..+.+..
T Consensus 172 Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 172 ARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999987 55667888999999999999999999998875432 1221111 11 1111111111112222
Q ss_pred HHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc-CCCCCHh
Q 046221 343 MRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFLRDVV 421 (572)
Q Consensus 343 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~ 421 (572)
+. +...+ ..+.++..+..+...+...|+.++|.+++++. ...|+..
T Consensus 251 ~~--------------------------------~~~p~-~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~ 297 (409)
T TIGR00540 251 WW--------------------------------KNQPR-HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDR 297 (409)
T ss_pred HH--------------------------------HHCCH-HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcc
Confidence 21 11100 01236667777888888888888888888888 4445543
Q ss_pred H---HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHH
Q 046221 422 S---WNTIIYGYGVNGHGETALALYHKMTETGEVPDS---STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYG 495 (572)
Q Consensus 422 ~---~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 495 (572)
. ...........++.+.+.+.+++..+. .|+. ....++...|.+.|++++|.+.|+.+. .....|+...+.
T Consensus 298 ~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~-a~~~~p~~~~~~ 374 (409)
T TIGR00540 298 AISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVA-ACKEQLDANDLA 374 (409)
T ss_pred cchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhH-HhhcCCCHHHHH
Confidence 2 122222334457788888888888874 5544 456688888999999999999999532 223468888888
Q ss_pred HHHHHHHhhCChhHHHHHHHhcc
Q 046221 496 CVVDLLARAGCLSDASGLAGKLL 518 (572)
Q Consensus 496 ~l~~~~~~~g~~~~A~~~~~~~~ 518 (572)
.+...+.+.|+.++|.+++++..
T Consensus 375 ~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 375 MAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999998754
No 52
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=1.1e-10 Score=105.56 Aligned_cols=213 Identities=15% Similarity=0.103 Sum_probs=145.6
Q ss_pred hcCChhHHHHHHhccCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHH
Q 046221 298 KCGDLDSSRSVFNQITEK---SLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQ 374 (572)
Q Consensus 298 ~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 374 (572)
-.|+.-.|..-|+..... +...|-.+...|....+.++.++.|.+..+..+..|| +|..-.....-.++++.|..
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~d--vYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPD--VYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCc--hhHhHHHHHHHHHHHHHHHH
Confidence 346666666666665532 2223666666777788888888888877533333333 44444444455567777777
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc--CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 046221 375 LHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM--GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV 452 (572)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~ 452 (572)
=|+..+... +-+...|..+.-+..+.++++++...|++. .++..+..|+.....+..++++++|.+.|+..++ +.
T Consensus 416 DF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~--LE 492 (606)
T KOG0547|consen 416 DFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE--LE 492 (606)
T ss_pred HHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--hc
Confidence 777776644 344556666666777888999999999988 6645577888888889999999999999998887 45
Q ss_pred CC-------HH--HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChh-HHHHHHHHHHhhCChhHHHHHHHhccC
Q 046221 453 PD-------SS--TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQE-HYGCVVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 453 p~-------~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
|+ .. ....++..-.+ +++.+|+++++++++ +.|... .|..|...-.++|+.++|+++|++...
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e---~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIE---LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHc---cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 54 11 11222222233 788899999998875 344443 788888888999999999999998653
No 53
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=1e-11 Score=116.54 Aligned_cols=279 Identities=14% Similarity=0.045 Sum_probs=208.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCCccchHHHHHHhcccCChHHHHHHHHHHHHhCC--CCCcchHHHHHHHHHhcCChhHHHH
Q 046221 230 EYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL--QSELRLSNSIIAMYSKCGDLDSSRS 307 (572)
Q Consensus 230 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~ 307 (572)
-+..+|...|...... +.-+......+-++|...+++++++++|+.+.+... ..+..+|.+.+..+-+.=...---+
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 4467888888884443 333345556677889999999999999999887642 3456677776655443322222222
Q ss_pred HHhccCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCc
Q 046221 308 VFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRY 387 (572)
Q Consensus 308 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 387 (572)
-+-.+....+.+|.++..+|.-.++.+.|++.|++.. .-.+-...+|+.+..-+.....+|.|...|+..+ ..+
T Consensus 412 ~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAi--Qldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al----~~~ 485 (638)
T KOG1126|consen 412 DLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAI--QLDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL----GVD 485 (638)
T ss_pred HHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhh--ccCCccchhhhhcCChhhhhHHHHhHHHHHHhhh----cCC
Confidence 2222334467899999999999999999999999885 2223366788888788888889999999887665 456
Q ss_pred hhHHHH---HHHHhhhcCChHHHHHHHHHc-CCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHH
Q 046221 388 RSVQNC---LISSYSKCGNVDLAYIVFEEM-GFLRD-VVSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSI 461 (572)
Q Consensus 388 ~~~~~~---l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l 461 (572)
+.+||+ +...|.+.++++.|+-.|++. .+.|. .+....+...+-+.|+.++|+.+++++.. +.| |+.+-...
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH--LDPKNPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCCchhHHHH
Confidence 666665 566789999999999999998 66664 56667777888899999999999999998 455 55665666
Q ss_pred HHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC
Q 046221 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 462 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
+..+...+++++|+..++++.+ . ++-+...+..++..|.+.|+.+.|+.=|.-+.+
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~-~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKE-L-VPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHH-h-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 7778889999999999999953 2 344455788888999999999999988887775
No 54
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.47 E-value=2.4e-10 Score=100.97 Aligned_cols=286 Identities=13% Similarity=0.040 Sum_probs=172.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCccchHHHHHHhcccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHHHHH
Q 046221 229 FEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSV 308 (572)
Q Consensus 229 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 308 (572)
.|++.+|+++..+-.+.+-.| ...|.....+.-..|+.+.+...+.++.+..-.++....-.........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 577888888877766654322 3345555666677788888888888777664455555666667777778888877776
Q ss_pred HhccC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCC
Q 046221 309 FNQIT---EKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFP 385 (572)
Q Consensus 309 ~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 385 (572)
.+++. ..++........+|.+.|++.....++..+. +.+.-.++..- +
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~-ka~~l~~~e~~-----------------~----------- 226 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLR-KAGLLSDEEAA-----------------R----------- 226 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHH-HccCCChHHHH-----------------H-----------
Confidence 66554 3455677777888888888888888888887 55544333210 0
Q ss_pred CchhHHHHHHHHhhhcCChHHHHHHHHHc--CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 046221 386 RYRSVQNCLISSYSKCGNVDLAYIVFEEM--GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN 463 (572)
Q Consensus 386 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 463 (572)
....+|+.+++-....+..+.-...|+.. ..+.++..-.+++.-+.+.|+.++|.++..+..+.+..|+ -...-
T Consensus 227 le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~ 302 (400)
T COG3071 227 LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLI 302 (400)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHH
Confidence 01112333344333444444444445544 2333444455555666666666666666666666554444 11222
Q ss_pred HHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC-CCChHHHHHHHHHHhhhcCCHHH
Q 046221 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE-GMGPNIWRALLSGCVLHVGRFQD 542 (572)
Q Consensus 464 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~g~~~~ 542 (572)
.+.+-++...-++..++.++.++..| ..+.+|...|.+.+.+.+|.+.|+.... .|+..+|+.+..++-.. |+..+
T Consensus 303 ~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~-g~~~~ 379 (400)
T COG3071 303 PRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQL-GEPEE 379 (400)
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHc-CChHH
Confidence 34556666666666666655543333 5566666666666666666666666655 66666666666666555 66666
Q ss_pred HHHHHHHHH
Q 046221 543 AEALRSGSQ 551 (572)
Q Consensus 543 A~~~~~~m~ 551 (572)
|.+++++-.
T Consensus 380 A~~~r~e~L 388 (400)
T COG3071 380 AEQVRREAL 388 (400)
T ss_pred HHHHHHHHH
Confidence 666666654
No 55
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=4.3e-10 Score=103.65 Aligned_cols=273 Identities=14% Similarity=0.043 Sum_probs=192.9
Q ss_pred HHHHHHhcccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHHHHHHhccCC---CCcchHHHHHHHHHHcC
Q 046221 255 LNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE---KSLVSWTAIISGYVQNG 331 (572)
Q Consensus 255 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~ 331 (572)
..-..-|...+++.+..++.+.+.+.. ++....+..-|.++.+.|+..+-.-+=.++.+ ....+|-++.--|...|
T Consensus 248 ~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~ 326 (611)
T KOG1173|consen 248 AEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIG 326 (611)
T ss_pred HHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhc
Confidence 333445566678888888888887765 55555556666677888877766666556654 24578888888888888
Q ss_pred ChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCC-CchhHHHHHHHHhhhcCChHHHHHH
Q 046221 332 CAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFP-RYRSVQNCLISSYSKCGNVDLAYIV 410 (572)
Q Consensus 332 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~ 410 (572)
+..+|.+.|.+.... .+.=...|..+...++-.+..|+|...+....+.-.. .-+..| +.--|.+.++++-|.++
T Consensus 327 k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LY--lgmey~~t~n~kLAe~F 402 (611)
T KOG1173|consen 327 KYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLY--LGMEYMRTNNLKLAEKF 402 (611)
T ss_pred CcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHH--HHHHHHHhccHHHHHHH
Confidence 899999988877411 1112346777788888888888888887666553111 111222 33457778888999998
Q ss_pred HHHc-CCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCC----HHHHHHHHHHHhccCChHHHHHHHHHhH
Q 046221 411 FEEM-GFLR-DVVSWNTIIYGYGVNGHGETALALYHKMTET--GEVPD----SSTYLSILNACGHAGLTNDGLVIFNQMI 482 (572)
Q Consensus 411 ~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--g~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 482 (572)
|.+. ++.| |+...+-+.......+.+.+|..+|+..+.. .+.+. ..+++.|..+|.+.+++++|+..+++++
T Consensus 403 f~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL 482 (611)
T KOG1173|consen 403 FKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKAL 482 (611)
T ss_pred HHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 8887 5545 5677777777777778888999888887632 11111 2457788888889999999999999887
Q ss_pred HhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC-CCChHHHHHHHHHHh
Q 046221 483 EENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE-GMGPNIWRALLSGCV 534 (572)
Q Consensus 483 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~ 534 (572)
... +-+..++.++.-.|...|+++.|.+.|.+... +|+..+...++..+.
T Consensus 483 ~l~--~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 483 LLS--PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HcC--CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 544 66777888888888889999999999998877 788777776666543
No 56
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.44 E-value=5.8e-08 Score=91.28 Aligned_cols=493 Identities=13% Similarity=0.127 Sum_probs=304.7
Q ss_pred hhhHHHHHHHHhhCCChHHHHHHHHHHHHc-CCCCCcchHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCcccCCCCCC
Q 046221 36 VVSWSIVIHGYSINGFHEKSMKAFSHMMLS-GLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPY 114 (572)
Q Consensus 36 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 114 (572)
+..|-..+..+.++|+.-.....|+..+.. .+.--...|...+.-....|-++.+.+++...++..+.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~----------- 170 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPE----------- 170 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHH-----------
Confidence 457788888889999999999999886653 34444457888888888888899999999999887652
Q ss_pred ceeHHHHHHHHHhCCChHHHHHHHHHHHhCC------CCCCHhhHHHHHHHHhccCChHH---HHHHHHHHHHhcCCCC-
Q 046221 115 LVSCNAIVAGFINNKLFQQAVLLFNFFRGSG------LVPNAVTMLTVIRGCVALGSRAL---CELIHGLTIKLGLILD- 184 (572)
Q Consensus 115 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~------~~p~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~- 184 (572)
.-+.-|..+++.+++++|.+.+....... .+.+...|..+-...++..+.-. ...+++.++.. -+|
T Consensus 171 --~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq 246 (835)
T KOG2047|consen 171 --AREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQ 246 (835)
T ss_pred --HHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHH
Confidence 46778889999999999999998876431 23344455555454444433222 22333333322 233
Q ss_pred -hhHHhHHHHHHHhCCCHHHHHHHHhhcCC--CCcccHHHHHHHHHcc----------------CC------HHHHHHHH
Q 046221 185 -VSVNNSVLDMYSCLMDLDAAIQIFREMEC--KDVISWTRMMGLFVDF----------------EY------AGDALKIF 239 (572)
Q Consensus 185 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~----------------~~------~~~a~~~~ 239 (572)
...|++|.+-|.+.|.++.|..+|++... -.+.-|..+.++|++- ++ ++-.+.-|
T Consensus 247 ~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~ 326 (835)
T KOG2047|consen 247 LGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARF 326 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHH
Confidence 36899999999999999999999988765 2333344444444321 11 12223334
Q ss_pred HHHHhCC-CC---------C-CccchHHHHHHhcccCChHHHHHHHHHHHHhCCCC------CcchHHHHHHHHHhcCCh
Q 046221 240 REMRKSR-II---------C-DTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS------ELRLSNSIIAMYSKCGDL 302 (572)
Q Consensus 240 ~~m~~~~-~~---------p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~ 302 (572)
+.+...+ +- | +..++..- .-...|+..+....+.++.+.- .| -...|..+...|-..|++
T Consensus 327 e~lm~rr~~~lNsVlLRQn~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l 403 (835)
T KOG2047|consen 327 ESLMNRRPLLLNSVLLRQNPHNVEEWHKR--VKLYEGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDL 403 (835)
T ss_pred HHHHhccchHHHHHHHhcCCccHHHHHhh--hhhhcCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcH
Confidence 4333321 00 1 11111111 1223456667777777776542 11 124677888999999999
Q ss_pred hHHHHHHhccCCCCcc-------hHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCC-----------H------hHHHH
Q 046221 303 DSSRSVFNQITEKSLV-------SWTAIISGYVQNGCAREALNQFIKMRQEKTDSVD-----------S------ITLVS 358 (572)
Q Consensus 303 ~~a~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------~------~~~~~ 358 (572)
+.|..+|++..+-+-. +|..-...-.++.+++.|+++.+... .-+..|. . ..|..
T Consensus 404 ~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~-~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~ 482 (835)
T KOG2047|consen 404 DDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRAT-HVPTNPELEYYDNSEPVQARLHRSLKIWSM 482 (835)
T ss_pred HHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh-cCCCchhhhhhcCCCcHHHHHHHhHHHHHH
Confidence 9999999998874433 34444444556778889998888765 3222211 1 12333
Q ss_pred HHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc----CCCCC-HhHHHHHHHHHHh-
Q 046221 359 ILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM----GFLRD-VVSWNTIIYGYGV- 432 (572)
Q Consensus 359 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~-~~~~~~l~~~~~~- 432 (572)
.+......|-++....+++.+.+..+.....+.| ....+-...-++++.+++++- .- |+ ...|+..+.-+.+
T Consensus 483 y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~-p~v~diW~tYLtkfi~r 560 (835)
T KOG2047|consen 483 YADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKW-PNVYDIWNTYLTKFIKR 560 (835)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCC-ccHHHHHHHHHHHHHHH
Confidence 3334445567788888888888877543333322 333445566789999999876 22 33 3567766655544
Q ss_pred --cCChHHHHHHHHHHHhcCCCCCHHHHHHHH--HHHhccCChHHHHHHHHHhHHhcCCCCCh--hHHHHHHHHHHhhCC
Q 046221 433 --NGHGETALALYHKMTETGEVPDSSTYLSIL--NACGHAGLTNDGLVIFNQMIEENKVKPSQ--EHYGCVVDLLARAGC 506 (572)
Q Consensus 433 --~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~ 506 (572)
...++.|..+|++.++ |.+|...-+-.|+ ..=-+.|....|..+++++.. ++++.. ..|+.+|.-....=-
T Consensus 561 ygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yG 637 (835)
T KOG2047|consen 561 YGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYG 637 (835)
T ss_pred hcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhC
Confidence 2468999999999999 6777553222222 223456888899999999843 344443 367777754443333
Q ss_pred hhHHHHHHHhccC-CCChHHHHHHH--HHHhhhcCCHHHHHHHHHHHHh
Q 046221 507 LSDASGLAGKLLE-GMGPNIWRALL--SGCVLHVGRFQDAEALRSGSQK 552 (572)
Q Consensus 507 ~~~A~~~~~~~~~-~~~~~~~~~l~--~~~~~~~g~~~~A~~~~~~m~~ 552 (572)
...-.++++++.+ -|+..+-...+ .-.-...|..+.|..++.--.+
T Consensus 638 v~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 638 VPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred CcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 4455667777666 45544422222 2222235888999888765433
No 57
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.42 E-value=9.3e-10 Score=97.35 Aligned_cols=284 Identities=13% Similarity=0.056 Sum_probs=159.8
Q ss_pred CCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHHHHHHhCCCHHHHHHH
Q 046221 128 NKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQI 207 (572)
Q Consensus 128 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 207 (572)
.|+|..|.++..+-.+.+-.| ...|..-.++.-+.|+.+.+..++.+.-+..-.++...+-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 577777777777766655332 3345555666667777777777777776654355555556666666666766666665
Q ss_pred HhhcCC---CCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCccchHHHHHHhcccCChHHHHHHHHHHHHhCCCC
Q 046221 208 FREMEC---KDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQS 284 (572)
Q Consensus 208 ~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 284 (572)
..++.+ .++.......++|.+.|++.....++..+.+.|+--|+.. .++
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~-----------------~~l----------- 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA-----------------ARL----------- 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH-----------------HHH-----------
Confidence 555443 4556666666677777777777777666666654322210 000
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHhccCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHH
Q 046221 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITE---KSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILT 361 (572)
Q Consensus 285 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~ 361 (572)
...++..+++-....+..+.-...++..+. .++..-..++.-+.+.|+.++|.++..+..
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~L----------------- 290 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDAL----------------- 290 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHH-----------------
Confidence 011223333333333333333333443331 233444444445555555555555555554
Q ss_pred HhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc--CCCCCHhHHHHHHHHHHhcCChHHH
Q 046221 362 ASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM--GFLRDVVSWNTIIYGYGVNGHGETA 439 (572)
Q Consensus 362 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A 439 (572)
+.+..|+.. ..-.+.+.++.+.-++..++. ..+.++..+.+|...|.+++.+.+|
T Consensus 291 -------------------k~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA 347 (400)
T COG3071 291 -------------------KRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKA 347 (400)
T ss_pred -------------------HhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHH
Confidence 333333311 111223444444444444433 2222335666777777777777777
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhH
Q 046221 440 LALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMI 482 (572)
Q Consensus 440 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 482 (572)
...|+...+ ..|+..+|..+..++.+.|+..+|.+..++.+
T Consensus 348 ~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 348 SEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 777776666 46777777777777777777777777777765
No 58
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.41 E-value=1.6e-08 Score=87.95 Aligned_cols=445 Identities=13% Similarity=0.059 Sum_probs=273.5
Q ss_pred HHHHhhcCChhhHHHHhccCCC------CChhhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHcCCC
Q 046221 12 LSNYFKSGKIKEAENLFDEIPE------KNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQ 85 (572)
Q Consensus 12 ~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 85 (572)
+.-+....++..|+.+++--.. .+...| +...+.+.|++++|+..|.-+.... .++...+..|..+..-.|
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLW--IAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLG 105 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHH--HHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHH
Confidence 3445566789999999885543 122333 3346778999999999999988755 666666777777777788
Q ss_pred ChHHHHHHHHHHHHhcCCCCcccCCCCCCceeHHHHH-HHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC
Q 046221 86 NLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIV-AGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164 (572)
Q Consensus 86 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 164 (572)
.+.+|..+.... |+....+.|+ ....+.|+-++-...-+.+... ...-.++....-..-
T Consensus 106 ~Y~eA~~~~~ka---------------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~ 165 (557)
T KOG3785|consen 106 QYIEAKSIAEKA---------------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRM 165 (557)
T ss_pred HHHHHHHHHhhC---------------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHH
Confidence 888888875543 4445555554 4455667776666555555431 122223333333334
Q ss_pred ChHHHHHHHHHHHHhcCCCChhHHhHH-HHHHHhCCCHHHHHHHHhhcCC--CC-cccHHHHHHHHHccCCHHHHHHHHH
Q 046221 165 SRALCELIHGLTIKLGLILDVSVNNSV-LDMYSCLMDLDAAIQIFREMEC--KD-VISWTRMMGLFVDFEYAGDALKIFR 240 (572)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~ 240 (572)
.+.+|.+++...+..+ |+-...|.- .-+|.+..-++-+.+++.--.+ || +.+.|.......+.-.-..|.+-..
T Consensus 166 HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k 243 (557)
T KOG3785|consen 166 HYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKK 243 (557)
T ss_pred HHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHH
Confidence 5788999998887643 343334433 3356777777777776665443 33 3444444444433322223444444
Q ss_pred HHHhCCCCCCccchH-HHH-HHhcccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHHHHHHhccCCCCcc
Q 046221 241 EMRKSRIICDTVALL-NLI-SVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLV 318 (572)
Q Consensus 241 ~m~~~~~~p~~~~~~-~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 318 (572)
.+.+.+-.. ..+. -++ +.+....+-+.|.+++-.+.+. .|... -.|+-.|.+.+++++|..+...+...++.
T Consensus 244 ~ladN~~~~--~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPEAR--lNL~iYyL~q~dVqeA~~L~Kdl~PttP~ 317 (557)
T KOG3785|consen 244 ELADNIDQE--YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPEAR--LNLIIYYLNQNDVQEAISLCKDLDPTTPY 317 (557)
T ss_pred HHHhccccc--chhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChHhh--hhheeeecccccHHHHHHHHhhcCCCChH
Confidence 444432111 1111 111 1223345667888887777654 23222 24556788999999999999988765554
Q ss_pred hHHHHHHHHHHcC-------ChHHHHHHHHHHHhcCCCCCCHh-HHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhH
Q 046221 319 SWTAIISGYVQNG-------CAREALNQFIKMRQEKTDSVDSI-TLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV 390 (572)
Q Consensus 319 ~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 390 (572)
-|-.-.-.+...| ...-|...|+-.- ..+..-|.. .-.++.+++.-...++.+.-++..+...-...|...
T Consensus 318 EyilKgvv~aalGQe~gSreHlKiAqqffqlVG-~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn 396 (557)
T KOG3785|consen 318 EYILKGVVFAALGQETGSREHLKIAQQFFQLVG-ESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFN 396 (557)
T ss_pred HHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhc-ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Confidence 4432222233333 2445556665554 444333332 233444455556678888888888777666666666
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHc-CCC-CCHhHHHH-HHHHHHhcCChHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHh
Q 046221 391 QNCLISSYSKCGNVDLAYIVFEEM-GFL-RDVVSWNT-IIYGYGVNGHGETALALYHKMTETGEVPDSST-YLSILNACG 466 (572)
Q Consensus 391 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~-~~~l~~~~~ 466 (572)
+| +.++++..|.+.+|+++|-.+ +.. .+..+|.. |.++|.+.+.++.|+.++-++-. +.+..+ ...+..-|.
T Consensus 397 ~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CY 472 (557)
T KOG3785|consen 397 LN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCY 472 (557)
T ss_pred hH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHH
Confidence 66 889999999999999999988 221 45566654 56889999999998877655432 334444 444556788
Q ss_pred ccCChHHHHHHHHHhHHhcCCCCChhHHH
Q 046221 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYG 495 (572)
Q Consensus 467 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 495 (572)
+.+.+=-|.+.|+.+ +. ..|+++.|.
T Consensus 473 k~~eFyyaaKAFd~l-E~--lDP~pEnWe 498 (557)
T KOG3785|consen 473 KANEFYYAAKAFDEL-EI--LDPTPENWE 498 (557)
T ss_pred HHHHHHHHHHhhhHH-Hc--cCCCccccC
Confidence 999988888888877 44 478887774
No 59
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=2.3e-09 Score=98.95 Aligned_cols=477 Identities=12% Similarity=-0.000 Sum_probs=298.2
Q ss_pred hhhHHHHHhhcCChhhHHHHhccCCC--CChhhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHcCCC
Q 046221 8 SSKLLSNYFKSGKIKEAENLFDEIPE--KNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQ 85 (572)
Q Consensus 8 ~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 85 (572)
|..+++-+..+.++.-|.-+-+++-. .|+..---+.+++.-.|++.+|..+...-.-. ..|..+......++.+..
T Consensus 19 ~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~~lk 96 (611)
T KOG1173|consen 19 YRRLVRDALMQHRYKTALFWADKVAGLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLVKLK 96 (611)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHH
Confidence 44455555556666666666665532 45555555667777778888887776653221 445556666667777888
Q ss_pred ChHHHHHHHHHHHHhc--CCCCccc--CCCCCCc-----------eeHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCH
Q 046221 86 NLELARSIHGLMVKFG--LESDLFE--GLKNPYL-----------VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNA 150 (572)
Q Consensus 86 ~~~~a~~~~~~~~~~~--~~~~~~~--~~~~~~~-----------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 150 (572)
++++|..++....... +..+.-. ..-.+|. ..+-.-...|....+.++|...|.+.... |.
T Consensus 97 ~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~----D~ 172 (611)
T KOG1173|consen 97 EWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA----DA 172 (611)
T ss_pred HHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc----ch
Confidence 8888888877321110 0000000 0000111 11111123344445566666666655433 33
Q ss_pred hhHHH---HHHHHhccCChHHHHHHHHHHHHh-cCCCChhHHhHHHHHH-HhCCCHHHHHHHH--hhcC--CCCcccHHH
Q 046221 151 VTMLT---VIRGCVALGSRALCELIHGLTIKL-GLILDVSVNNSVLDMY-SCLMDLDAAIQIF--REME--CKDVISWTR 221 (572)
Q Consensus 151 ~~~~~---ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~--~~~~--~~~~~~~~~ 221 (572)
.-|.. ++.+..-.. .+-..++...--. -...+......+.... ++..+ +.....- +.+. +.++.....
T Consensus 173 ~c~Ea~~~lvs~~mlt~--~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n-~~~~~r~~~~sl~~l~~~~dll~~ 249 (611)
T KOG1173|consen 173 KCFEAFEKLVSAHMLTA--QEEFELLESLDLAMLTKEDVERLEILYELKLCKNRN-EESLTRNEDESLIGLAENLDLLAE 249 (611)
T ss_pred hhHHHHHHHHHHHhcch--hHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcc-ccccccCchhhhhhhhhcHHHHHH
Confidence 33322 222211110 0111111100000 0001111111111111 00000 0000000 0000 134445555
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCccchHHHHHHhcccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCC
Q 046221 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGD 301 (572)
Q Consensus 222 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 301 (572)
..+-+...+++.+..++.....+. .++....+..-|.++...|+..+-..+=..+++.- +..+.+|-++.--|.-.|+
T Consensus 250 ~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k 327 (611)
T KOG1173|consen 250 KADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGK 327 (611)
T ss_pred HHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcC
Confidence 666777889999999999999876 45666777777778888888877777767776654 6677888888888888999
Q ss_pred hhHHHHHHhccCCCCc---chHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHH
Q 046221 302 LDSSRSVFNQITEKSL---VSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGI 378 (572)
Q Consensus 302 ~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 378 (572)
.++|.+.|.+...-|. ..|-...+.|+-.|..++|+..+...- +-.+-....+.-+..-|.+.++.+.|.++|..
T Consensus 328 ~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAa--rl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~ 405 (611)
T KOG1173|consen 328 YSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAA--RLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQ 405 (611)
T ss_pred cHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHH--HhccCCcchHHHHHHHHHHhccHHHHHHHHHH
Confidence 9999999998765433 589999999999999999999988774 22222333344455678889999999999988
Q ss_pred HHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc-----CC---CC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 046221 379 AFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-----GF---LR-DVVSWNTIIYGYGVNGHGETALALYHKMTET 449 (572)
Q Consensus 379 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~---~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 449 (572)
..... |.|+.+.+-+.-.....+.+.+|..+|+.. .. .+ -..+++.|..+|.+.+.+++|+..+++.+..
T Consensus 406 A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l 484 (611)
T KOG1173|consen 406 ALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL 484 (611)
T ss_pred HHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 87654 667888888888888899999999999877 11 11 2445788889999999999999999999984
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 046221 450 GEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLA 502 (572)
Q Consensus 450 g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 502 (572)
.+-+..++.++.-.|...|+++.|+..|.+.+ .+.|+..+...++..+.
T Consensus 485 -~~k~~~~~asig~iy~llgnld~Aid~fhKaL---~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 485 -SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL---ALKPDNIFISELLKLAI 533 (611)
T ss_pred -CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH---hcCCccHHHHHHHHHHH
Confidence 23477999999999999999999999999876 46788877666665443
No 60
>PF13041 PPR_2: PPR repeat family
Probab=99.36 E-value=1.7e-12 Score=82.28 Aligned_cols=50 Identities=26% Similarity=0.539 Sum_probs=43.9
Q ss_pred CCceeHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc
Q 046221 113 PYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA 162 (572)
Q Consensus 113 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 162 (572)
||+.+||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888999999999999999999999999999999999999998888864
No 61
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=2.5e-08 Score=92.83 Aligned_cols=211 Identities=13% Similarity=0.044 Sum_probs=132.0
Q ss_pred HHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHHHHHHhCCCH
Q 046221 122 VAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDL 201 (572)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (572)
+.-+..+|++++|.+...++...+ +-+...+..-+-+..+.+.+++|..+.+.-.. ...+...+---..+..+.+..
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHHHHHHcccH
Confidence 455677899999999999999865 44556677777888899999999855443111 011111111113344578999
Q ss_pred HHHHHHHhhcCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CccchHHHHHHhcccCChHHHHHHHHHHHHh
Q 046221 202 DAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIIC-DTVALLNLISVNAILGDLKRGKQLHAQVVLG 280 (572)
Q Consensus 202 ~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 280 (572)
|+|...++.....+..+...-.+.+.+.+++++|+++|+.+.+++..- +...-..++.+-.. ... ..+...
T Consensus 96 Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~-------l~~-~~~q~v 167 (652)
T KOG2376|consen 96 DEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA-------LQV-QLLQSV 167 (652)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh-------hhH-HHHHhc
Confidence 999999996665666677777788999999999999999998775322 11111122211110 000 112222
Q ss_pred CCCCCcchHHHH---HHHHHhcCChhHHHHHHhccC--------CCCc----------chHHHHHHHHHHcCChHHHHHH
Q 046221 281 GLQSELRLSNSI---IAMYSKCGDLDSSRSVFNQIT--------EKSL----------VSWTAIISGYVQNGCAREALNQ 339 (572)
Q Consensus 281 ~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~--------~~~~----------~~~~~l~~~~~~~~~~~~a~~~ 339 (572)
...| ..+|..+ .-.+...|++.+|+++++... +.|. ..--.+.-.+...|+..+|..+
T Consensus 168 ~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i 246 (652)
T KOG2376|consen 168 PEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSI 246 (652)
T ss_pred cCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 2222 3334333 334667899999999988772 1111 1223345566788999999999
Q ss_pred HHHHH
Q 046221 340 FIKMR 344 (572)
Q Consensus 340 ~~~~~ 344 (572)
+....
T Consensus 247 y~~~i 251 (652)
T KOG2376|consen 247 YVDII 251 (652)
T ss_pred HHHHH
Confidence 98885
No 62
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.34 E-value=6.7e-10 Score=98.99 Aligned_cols=162 Identities=14% Similarity=0.030 Sum_probs=98.9
Q ss_pred hhHHHHHHHHhhhcCChHHHHHHHHHc-C-CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHH
Q 046221 388 RSVQNCLISSYSKCGNVDLAYIVFEEM-G-FLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNA 464 (572)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~ 464 (572)
...+..+...+...|++++|.+.+++. . .+.+...+..+...+...|++++|...+++..+....| ....+..+..+
T Consensus 65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (234)
T TIGR02521 65 YLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLC 144 (234)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 344455566666666777776666665 2 22334556666666777777777777777776532222 23455556666
Q ss_pred HhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC--CCChHHHHHHHHHHhhhcCCHHH
Q 046221 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE--GMGPNIWRALLSGCVLHVGRFQD 542 (572)
Q Consensus 465 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~g~~~~ 542 (572)
+...|++++|...++++++.. +.+...+..+...+...|++++|.+.+++... +.++..+..+...+... |+.++
T Consensus 145 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 221 (234)
T TIGR02521 145 ALKAGDFDKAEKYLTRALQID--PQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARAL-GDVAA 221 (234)
T ss_pred HHHcCCHHHHHHHHHHHHHhC--cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-hhHHH
Confidence 777777777777777776433 23345666677777777777777777777655 33334444444444444 77777
Q ss_pred HHHHHHHHHh
Q 046221 543 AEALRSGSQK 552 (572)
Q Consensus 543 A~~~~~~m~~ 552 (572)
|..+.+.+.+
T Consensus 222 a~~~~~~~~~ 231 (234)
T TIGR02521 222 AQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHh
Confidence 7777666654
No 63
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.34 E-value=3.3e-09 Score=91.09 Aligned_cols=211 Identities=15% Similarity=0.128 Sum_probs=138.0
Q ss_pred CCCHHHHHHHHhhcCCCCcccH---HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcc------chHHHHHHhcccCChH
Q 046221 198 LMDLDAAIQIFREMECKDVISW---TRMMGLFVDFEYAGDALKIFREMRKSRIICDTV------ALLNLISVNAILGDLK 268 (572)
Q Consensus 198 ~~~~~~a~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~------~~~~ll~~~~~~~~~~ 268 (572)
+.+.++|.+.|-+|.+.|..++ -+|...|.+.|..+.|+++-+.+.++ ||.. ..-.|..-|...|-++
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 4689999999999998666555 46788999999999999999999875 4432 2234556677889999
Q ss_pred HHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHHHHHHhccCCCCcchHH--------HHHHHHHHcCChHHHHHHH
Q 046221 269 RGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWT--------AIISGYVQNGCAREALNQF 340 (572)
Q Consensus 269 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------~l~~~~~~~~~~~~a~~~~ 340 (572)
.|+.+|..+.+.+ .--......|+..|-...+|++|+++-+++.+-+...++ -+...+....+.+.|..++
T Consensus 125 RAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 125 RAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 9999999998755 334456678899999999999999998887765444443 3444444566777778777
Q ss_pred HHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc
Q 046221 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM 414 (572)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 414 (572)
.+..+.. +.....-..+.......|+++.|.+.++.+.+.+..--..+...|..+|...|+.++...++.++
T Consensus 204 ~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~ 275 (389)
T COG2956 204 KKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRA 275 (389)
T ss_pred HHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 7775221 11122222233344444555555555555554443333344444444455555554444444444
No 64
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.33 E-value=9.1e-08 Score=90.19 Aligned_cols=459 Identities=14% Similarity=0.084 Sum_probs=258.8
Q ss_pred hhhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCcccCCCCCCc
Q 046221 36 VVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYL 115 (572)
Q Consensus 36 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (572)
...|..++..| ..+++...++..+.+++ +.+--..|.....-.+...|+.++|........+..+ .+.
T Consensus 8 ~~lF~~~lk~y-E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~----------~S~ 75 (700)
T KOG1156|consen 8 NALFRRALKCY-ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL----------KSH 75 (700)
T ss_pred HHHHHHHHHHH-HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCc----------ccc
Confidence 34455555554 45678888888888777 3344445655555556678888999888776666544 566
Q ss_pred eeHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHHHHH
Q 046221 116 VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMY 195 (572)
Q Consensus 116 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 195 (572)
++|+.+.-.+....++++|++.|......+ +-|...+.-+.-.-++.|+++.......+..+.. +.
T Consensus 76 vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~------------ 141 (700)
T KOG1156|consen 76 VCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PS------------ 141 (700)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hh------------
Confidence 789888888888899999999998887753 2234444444333445555555444444443321 11
Q ss_pred HhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCCccchHHHHH------HhcccCChH
Q 046221 196 SCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSR-IICDTVALLNLIS------VNAILGDLK 268 (572)
Q Consensus 196 ~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~------~~~~~~~~~ 268 (572)
.-..|..+..++.-.|++..|..++++..+.. -.|+...|..... .....|..+
T Consensus 142 -------------------~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q 202 (700)
T KOG1156|consen 142 -------------------QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQ 202 (700)
T ss_pred -------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHH
Confidence 12334444455555555555555555554443 1344333332211 223345555
Q ss_pred HHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHHHHHHhccCCCCc--chHHH-HHHHHHHcCChHHHH-HHHHHHH
Q 046221 269 RGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSL--VSWTA-IISGYVQNGCAREAL-NQFIKMR 344 (572)
Q Consensus 269 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~-l~~~~~~~~~~~~a~-~~~~~~~ 344 (572)
.|.+.+......- ......-..-...+.+.+++++|..++..+..+++ ..|.. +..++.+-.+.-+++ .+|....
T Consensus 203 ~ale~L~~~e~~i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls 281 (700)
T KOG1156|consen 203 KALEHLLDNEKQI-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILS 281 (700)
T ss_pred HHHHHHHhhhhHH-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 5554444332211 11111122334566777888888888887775433 33333 333443333333444 5555543
Q ss_pred hcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHH----HHHHHHc-C----
Q 046221 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA----YIVFEEM-G---- 415 (572)
Q Consensus 345 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A----~~~~~~~-~---- 415 (572)
...+........-+.......-.+..-.++....+.|+++-..... ..|-.....+-. ..+...+ +
T Consensus 282 --~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~---SLyk~p~k~~~le~Lvt~y~~~L~~~~~f 356 (700)
T KOG1156|consen 282 --EKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLR---SLYKDPEKVAFLEKLVTSYQHSLSGTGMF 356 (700)
T ss_pred --hcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhH---HHHhchhHhHHHHHHHHHHHhhcccccCC
Confidence 1111111111111222222333344445566666777655433322 222222211111 1111111 1
Q ss_pred --------CCCCHhHHHH--HHHHHHhcCChHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHhHHh
Q 046221 416 --------FLRDVVSWNT--IIYGYGVNGHGETALALYHKMTETGEVPDS-STYLSILNACGHAGLTNDGLVIFNQMIEE 484 (572)
Q Consensus 416 --------~~~~~~~~~~--l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 484 (572)
.+|....|+. ++..|-+.|+++.|..+++....+ .|+. .-|..=.+.+...|++++|..+++++.+-
T Consensus 357 ~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el 434 (700)
T KOG1156|consen 357 NFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL 434 (700)
T ss_pred CcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Confidence 2466666654 567788999999999999999884 7776 66666678889999999999999988643
Q ss_pred cCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccCCC-ChH--------HHHHH--HHHHhhhcCCHHHHHHHHHHH
Q 046221 485 NKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM-GPN--------IWRAL--LSGCVLHVGRFQDAEALRSGS 550 (572)
Q Consensus 485 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~--------~~~~l--~~~~~~~~g~~~~A~~~~~~m 550 (572)
. .||..+-..-+.-..+.++.++|.++........ +.. .|..+ ..++.+. |++..|++-|...
T Consensus 435 D--~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~-~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 435 D--TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQ-NKLGLALKKFHEI 508 (700)
T ss_pred c--chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHH-HHHHHHHHHHhhH
Confidence 3 5777666678888889999999999988877622 111 24433 2334445 7777776655543
No 65
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=8e-08 Score=89.54 Aligned_cols=148 Identities=13% Similarity=0.010 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHH--------Hc-CCCCCHhHHHHHHHHHHhcCChHHH
Q 046221 369 LEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFE--------EM-GFLRDVVSWNTIIYGYGVNGHGETA 439 (572)
Q Consensus 369 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~-~~~~~~~~~~~l~~~~~~~~~~~~A 439 (572)
...+.+++....+....-...+.-.+++.....|+++.|.+++. .+ .+...+.+...+...+.+.++.+.|
T Consensus 357 ~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a 436 (652)
T KOG2376|consen 357 HKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSA 436 (652)
T ss_pred HhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccH
Confidence 44555555444443222223444555666677788888887777 33 2222333445555666666666666
Q ss_pred HHHHHHHHhc--CCCCCHH----HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHH
Q 046221 440 LALYHKMTET--GEVPDSS----TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL 513 (572)
Q Consensus 440 ~~~~~~~~~~--g~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 513 (572)
..++.+.... .-.+... ++.-+..--.+.|+.++|..+++++++.+ ++|..+...++.+|++ =+.+.|..+
T Consensus 437 ~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n--~~d~~~l~~lV~a~~~-~d~eka~~l 513 (652)
T KOG2376|consen 437 SAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN--PNDTDLLVQLVTAYAR-LDPEKAESL 513 (652)
T ss_pred HHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC--CchHHHHHHHHHHHHh-cCHHHHHHH
Confidence 6666655431 0112222 23333333456688888888888887544 6777788888887765 457777777
Q ss_pred HHhccC
Q 046221 514 AGKLLE 519 (572)
Q Consensus 514 ~~~~~~ 519 (572)
-.++..
T Consensus 514 ~k~L~p 519 (652)
T KOG2376|consen 514 SKKLPP 519 (652)
T ss_pred hhcCCC
Confidence 776643
No 66
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.32 E-value=1.3e-07 Score=89.24 Aligned_cols=458 Identities=12% Similarity=0.019 Sum_probs=261.0
Q ss_pred CChhhHHHHhccCCCCC---hhhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHcCCCChHHHHHHHH
Q 046221 19 GKIKEAENLFDEIPEKN---VVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHG 95 (572)
Q Consensus 19 ~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 95 (572)
+.+..-+++.+.+.+.. ..+.....-.+...|+.++|.+....-.+.+ .-+.+.|+.+.-..-...++++|.+.+.
T Consensus 21 kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~ 99 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYR 99 (700)
T ss_pred HHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHH
Confidence 45555555555544322 2333333334667799999999998877654 4456678877777778899999999999
Q ss_pred HHHHhcCCCCcccCCCCCCceeHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhccCChHHHHHHHH
Q 046221 96 LMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVP-NAVTMLTVIRGCVALGSRALCELIHG 174 (572)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~ 174 (572)
.+...+. .|...|..+.-.-++.|+++...+.-..+.+. .| ....|..+..+.--.|+...|..+++
T Consensus 100 nAl~~~~----------dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ 167 (700)
T KOG1156|consen 100 NALKIEK----------DNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILE 167 (700)
T ss_pred HHHhcCC----------CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999886 56678888887888889999999998888875 34 45567888888888999999999999
Q ss_pred HHHHhc-CCCChhHHhHHH------HHHHhCCCHHHHHHHHhhcCCC--Cccc-HHHHHHHHHccCCHHHHHHHHHHHHh
Q 046221 175 LTIKLG-LILDVSVNNSVL------DMYSCLMDLDAAIQIFREMECK--DVIS-WTRMMGLFVDFEYAGDALKIFREMRK 244 (572)
Q Consensus 175 ~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~--~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~ 244 (572)
...+.. -.|+...+.... ....+.|..+.|.+.+...... |... -..-...+.+.+++++|..++..+..
T Consensus 168 ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~ 247 (700)
T KOG1156|consen 168 EFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE 247 (700)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh
Confidence 998865 356665554332 2345677788888777766542 2222 23445667788888888888888887
Q ss_pred CCCCCCccchHHHHHHhc--ccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCCh-hHHHHHHhccCCCCc-chH
Q 046221 245 SRIICDTVALLNLISVNA--ILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDL-DSSRSVFNQITEKSL-VSW 320 (572)
Q Consensus 245 ~~~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~-~~~ 320 (572)
. .||..-|...+..+. -.+..+....+|....+.-......... =++ .....++ +....++..+.+.++ ..+
T Consensus 248 r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rl-pls-vl~~eel~~~vdkyL~~~l~Kg~p~vf 323 (700)
T KOG1156|consen 248 R--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRL-PLS-VLNGEELKEIVDKYLRPLLSKGVPSVF 323 (700)
T ss_pred h--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhc-cHH-HhCcchhHHHHHHHHHHHhhcCCCchh
Confidence 5 466666655444332 2222333334444443321110000000 000 0000111 112222222222222 233
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHH--HHHHHh
Q 046221 321 TAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQN--CLISSY 398 (572)
Q Consensus 321 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~ 398 (572)
..+...|-.....+-..++...+. ..+.....-.-.+. ...-+|+...|. .++..+
T Consensus 324 ~dl~SLyk~p~k~~~le~Lvt~y~-------------~~L~~~~~f~~~D~---------~~~E~PttllWt~y~laqh~ 381 (700)
T KOG1156|consen 324 KDLRSLYKDPEKVAFLEKLVTSYQ-------------HSLSGTGMFNFLDD---------GKQEPPTTLLWTLYFLAQHY 381 (700)
T ss_pred hhhHHHHhchhHhHHHHHHHHHHH-------------hhcccccCCCcccc---------cccCCchHHHHHHHHHHHHH
Confidence 333333322111111111111111 00000000000000 000144444443 456667
Q ss_pred hhcCChHHHHHHHHHc-CCCCCH-hHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHH
Q 046221 399 SKCGNVDLAYIVFEEM-GFLRDV-VSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLV 476 (572)
Q Consensus 399 ~~~g~~~~A~~~~~~~-~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 476 (572)
-+.|+++.|..+++.. +..|+. ..|-.-.+.+...|+++.|..++++..+.. .||...=.--..-..++++.++|.+
T Consensus 382 D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~ 460 (700)
T KOG1156|consen 382 DKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEE 460 (700)
T ss_pred HHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHH
Confidence 7888888888888877 666763 345555667778888888888888888753 3444333344555567788888888
Q ss_pred HHHHhHHhcCC--CCChh----HHHHH--HHHHHhhCChhHHHHHHHhc
Q 046221 477 IFNQMIEENKV--KPSQE----HYGCV--VDLLARAGCLSDASGLAGKL 517 (572)
Q Consensus 477 ~~~~~~~~~~~--~~~~~----~~~~l--~~~~~~~g~~~~A~~~~~~~ 517 (572)
+..... +.|. --+.. +|-.+ ..+|.++|++..|+.-|..+
T Consensus 461 ~~skFT-r~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 461 VLSKFT-REGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHHHhh-hcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 877774 3332 11110 12222 35677777777776655543
No 67
>PF13041 PPR_2: PPR repeat family
Probab=99.32 E-value=5.9e-12 Score=79.83 Aligned_cols=50 Identities=42% Similarity=0.620 Sum_probs=44.0
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Q 046221 418 RDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467 (572)
Q Consensus 418 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 467 (572)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78888999999999999999999999999988899999999998888874
No 68
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=5.3e-08 Score=86.60 Aligned_cols=286 Identities=13% Similarity=0.055 Sum_probs=175.5
Q ss_pred ccCCHHHHHHHHHHHHhCC-CCCCccchHHHHHHhcccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHHH
Q 046221 228 DFEYAGDALKIFREMRKSR-IICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSR 306 (572)
Q Consensus 228 ~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 306 (572)
..++...+...+-.+.... ++-|......+.+++...|+.+.+...|+.....+ +.+........-.+.+.|+.++..
T Consensus 208 ~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 208 FNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDS 286 (564)
T ss_pred HhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHH
Confidence 3444444444444443333 33344455566666666677777766666655433 111111122223344556666555
Q ss_pred HHHhccCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhc
Q 046221 307 SVFNQITEK---SLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG 383 (572)
Q Consensus 307 ~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 383 (572)
.+...+-.. ....|..-.......+++..|+.+-++..+ ..+-+...+..-...+...++.+.|.--|+......
T Consensus 287 ~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~--~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La 364 (564)
T KOG1174|consen 287 ALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCID--SEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA 364 (564)
T ss_pred HHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhc--cCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence 554444322 223344444444556667777776666541 112222333333345566677777776676665443
Q ss_pred CCCchhHHHHHHHHhhhcCChHHHHHHHHHc--CCCCCHhHHHHHH-HHHH-hcCChHHHHHHHHHHHhcCCCCCH-HHH
Q 046221 384 FPRYRSVQNCLISSYSKCGNVDLAYIVFEEM--GFLRDVVSWNTII-YGYG-VNGHGETALALYHKMTETGEVPDS-STY 458 (572)
Q Consensus 384 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~-~~~~-~~~~~~~A~~~~~~~~~~g~~p~~-~~~ 458 (572)
|-+...|.-|+.+|...|++.+|.-.-+.. ..+.+..+.+.+. ..+. ...--++|.+++++.+. +.|+. ...
T Consensus 365 -p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV 441 (564)
T KOG1174|consen 365 -PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAV 441 (564)
T ss_pred -hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHH
Confidence 456778888899999999988887766554 3333444544442 2222 22334788889988887 67876 667
Q ss_pred HHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC-CCC
Q 046221 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE-GMG 522 (572)
Q Consensus 459 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~ 522 (572)
+.+...|...|..++++.++++.+. ..||....+.|.+.+...+.+++|++.|..+.. +|.
T Consensus 442 ~~~AEL~~~Eg~~~D~i~LLe~~L~---~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 442 NLIAELCQVEGPTKDIIKLLEKHLI---IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHHHHHHhhCccchHHHHHHHHHh---hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 7788889999999999999998874 358999999999999999999999999998876 443
No 69
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.32 E-value=4.8e-08 Score=93.87 Aligned_cols=481 Identities=15% Similarity=0.086 Sum_probs=268.6
Q ss_pred hhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHc---CCCChHHHHHHHHHHHHhcCCCCcccCCCCCCceeHHHHHH
Q 046221 47 SINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAA---GLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVA 123 (572)
Q Consensus 47 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~---~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 123 (572)
...++..+++.-+.....++.+.+..++..+...+. ..++.+++ ++-..+....
T Consensus 238 ~~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~--------------------- 294 (799)
T KOG4162|consen 238 KKLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESL--------------------- 294 (799)
T ss_pred cCCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhc---------------------
Confidence 345566777777777777666777777666654443 45555555 2222222211
Q ss_pred HHHhCCChHHHH----HHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHHHHHHhCC
Q 046221 124 GFINNKLFQQAV----LLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLM 199 (572)
Q Consensus 124 ~~~~~~~~~~a~----~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (572)
+-..+.+++. -.+.+++...+.-|...|..+.-+....|+++.+-+.|++....- -.....|..+...|...|
T Consensus 295 --i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag 371 (799)
T KOG4162|consen 295 --IPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAG 371 (799)
T ss_pred --cccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhc
Confidence 1112222221 122333333445566667777777777777777777777665432 333455666666677777
Q ss_pred CHHHHHHHHhhcCC----C-CcccHHHHHHHHHc-cCCHHHHHHHHHHHHhC--CC--CCCccchHHHHHHhccc---C-
Q 046221 200 DLDAAIQIFREMEC----K-DVISWTRMMGLFVD-FEYAGDALKIFREMRKS--RI--ICDTVALLNLISVNAIL---G- 265 (572)
Q Consensus 200 ~~~~a~~~~~~~~~----~-~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~--~~--~p~~~~~~~ll~~~~~~---~- 265 (572)
.-..|..+++.-.. | |+..+-..-+.|.. -+..++++++..+.... +. ...+..|..+--+|... .
T Consensus 372 ~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~ 451 (799)
T KOG4162|consen 372 SDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQAN 451 (799)
T ss_pred cchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCC
Confidence 77777777765543 2 22223323333333 35566666655555441 11 11222233222222111 0
Q ss_pred -------ChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHHHHHHhccCC----CCcchHHHHHHHHHHcCChH
Q 046221 266 -------DLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE----KSLVSWTAIISGYVQNGCAR 334 (572)
Q Consensus 266 -------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~ 334 (572)
...++.+.+++..+.+. .|+.+.-.+.--|+..++++.|.....+..+ .+...|..+.-.+...+++.
T Consensus 452 ~~seR~~~h~kslqale~av~~d~-~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~ 530 (799)
T KOG4162|consen 452 LKSERDALHKKSLQALEEAVQFDP-TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLK 530 (799)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhH
Confidence 12346666777666552 2333333344456667777777776665543 34567777777777777777
Q ss_pred HHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHH---------------------hcC-------CC
Q 046221 335 EALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFE---------------------AGF-------PR 386 (572)
Q Consensus 335 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---------------------~~~-------~~ 386 (572)
+|+.+.+....+.|.. ......-+..-...++.+++......+.. .|+ ..
T Consensus 531 ~Al~vvd~al~E~~~N--~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~ 608 (799)
T KOG4162|consen 531 EALDVVDAALEEFGDN--HVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTD 608 (799)
T ss_pred HHHHHHHHHHHHhhhh--hhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccc
Confidence 7777777665443331 11111111111113333333332221111 010 11
Q ss_pred chhHHHHHHHHhhhc---CChHHHHHHHHHcCCC--CC------HhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-C
Q 046221 387 YRSVQNCLISSYSKC---GNVDLAYIVFEEMGFL--RD------VVSWNTIIYGYGVNGHGETALALYHKMTETGEVP-D 454 (572)
Q Consensus 387 ~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~--~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~ 454 (572)
...++..+....... -..+.. +...... |+ ...|......+.+.++.++|...+.+... +.| .
T Consensus 609 a~s~sr~ls~l~a~~~~~~~se~~---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~ 683 (799)
T KOG4162|consen 609 AISTSRYLSSLVASQLKSAGSELK---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLS 683 (799)
T ss_pred cchhhHHHHHHHHhhhhhcccccc---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhh
Confidence 122222222211111 111111 1111111 22 23455666778889999999988888887 455 4
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhhCChhHHHH--HHHhccC--CCChHHHHHH
Q 046221 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPS-QEHYGCVVDLLARAGCLSDASG--LAGKLLE--GMGPNIWRAL 529 (572)
Q Consensus 455 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~--~~~~~~~~~l 529 (572)
...|......+...|++.+|.+.|..++. +.|+ +....++..++.+.|+..-|.. ++..+.+ +.++..|..+
T Consensus 684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~---ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~L 760 (799)
T KOG4162|consen 684 ASVYYLRGLLLEVKGQLEEAKEAFLVALA---LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYL 760 (799)
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 47787888888999999999999998874 3454 4588899999999999888888 9998887 6678889999
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHhCCCCCCCceeEEEc
Q 046221 530 LSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFLNS 566 (572)
Q Consensus 530 ~~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 566 (572)
....... |+.+.|.+.|+...+-.. ..|--.|+.+
T Consensus 761 G~v~k~~-Gd~~~Aaecf~aa~qLe~-S~PV~pFs~i 795 (799)
T KOG4162|consen 761 GEVFKKL-GDSKQAAECFQAALQLEE-SNPVLPFSNI 795 (799)
T ss_pred HHHHHHc-cchHHHHHHHHHHHhhcc-CCCccccccc
Confidence 8888777 999999999998766543 2444444443
No 70
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.28 E-value=1.9e-09 Score=96.02 Aligned_cols=193 Identities=15% Similarity=0.127 Sum_probs=135.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHh
Q 046221 319 SWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398 (572)
Q Consensus 319 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 398 (572)
.+..+...+...|++++|...+++..+. .+.+...+..+...+...|+++.|...++...+.. +.+...+..+...+
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEH--DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 4445555666666666666666665422 22334455556666666677777777766666553 33445666677778
Q ss_pred hhcCChHHHHHHHHHc-C---CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChHH
Q 046221 399 SKCGNVDLAYIVFEEM-G---FLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNACGHAGLTND 473 (572)
Q Consensus 399 ~~~g~~~~A~~~~~~~-~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~ 473 (572)
...|++++|.+.+++. . .......+..+...+...|++++|...+++..+. .| +...+..+...+...|++++
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHH
Confidence 8888888888888887 2 1223456667778888899999999999988874 44 45677888888889999999
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhcc
Q 046221 474 GLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518 (572)
Q Consensus 474 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 518 (572)
|...++++++. .+.+...+..++..+...|+.++|..+.+.+.
T Consensus 188 A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 188 ARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999988754 24556667777888888999999988877764
No 71
>PRK12370 invasion protein regulator; Provisional
Probab=99.26 E-value=2e-09 Score=107.55 Aligned_cols=241 Identities=11% Similarity=-0.007 Sum_probs=163.5
Q ss_pred hhHHHHHHhccCCCCc---chHHHHHHHHH---------HcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccH
Q 046221 302 LDSSRSVFNQITEKSL---VSWTAIISGYV---------QNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAAL 369 (572)
Q Consensus 302 ~~~a~~~~~~~~~~~~---~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 369 (572)
+++|...|++..+.++ ..|..+..++. ..+++++|...+++..+. .+-+...+..+...+...|++
T Consensus 277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--dP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--DHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccCH
Confidence 4566666666654322 23444433332 224477888888887522 344556666677777788888
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc-CCCCCHh-HHHHHHHHHHhcCChHHHHHHHHHHH
Q 046221 370 EICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFLRDVV-SWNTIIYGYGVNGHGETALALYHKMT 447 (572)
Q Consensus 370 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~ 447 (572)
++|...+++..+.+ +.+...+..+..++...|++++|...+++. ...|+.. .+..++..+...|++++|+..++++.
T Consensus 355 ~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l 433 (553)
T PRK12370 355 IVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELR 433 (553)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 88888888888775 555667788888999999999999999998 5555532 33344445666889999999999988
Q ss_pred hcCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhhCChhHHHHHHHhccC----CC
Q 046221 448 ETGEVPD-SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPS-QEHYGCVVDLLARAGCLSDASGLAGKLLE----GM 521 (572)
Q Consensus 448 ~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~ 521 (572)
+.. .|+ ...+..+..++...|+.++|...++++... .|+ ....+.+...|...| ++|...++++.+ .+
T Consensus 434 ~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 434 SQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ---EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred Hhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc---cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 752 454 455777888888999999999999887533 344 334555666777777 477777777665 45
Q ss_pred ChHHHHHHHHHHhhhcCCHHHHHHHHHHHHhCCC
Q 046221 522 GPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGI 555 (572)
Q Consensus 522 ~~~~~~~l~~~~~~~~g~~~~A~~~~~~m~~~~~ 555 (572)
....+..++.+.+ |+-+.+..+ +++.+.+-
T Consensus 508 ~~~~~~~~~~~~~---g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 508 NNPGLLPLVLVAH---GEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred cCchHHHHHHHHH---hhhHHHHHH-HHhhccch
Confidence 4455555555554 777666666 77776653
No 72
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.25 E-value=5.5e-10 Score=95.75 Aligned_cols=228 Identities=13% Similarity=0.059 Sum_probs=134.3
Q ss_pred HHHHHHHHhcCChhHHHHHHhccCC--CCcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccc
Q 046221 290 NSIIAMYSKCGDLDSSRSVFNQITE--KSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELA 367 (572)
Q Consensus 290 ~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 367 (572)
+.+..+|.+.|.+.+|.+.|+...+ +-+.+|-.|-++|.+..++..|+.++.+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gl----------------------- 283 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGL----------------------- 283 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhh-----------------------
Confidence 3455556666666666665555432 344555555566666666666666665543
Q ss_pred cHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc--CCCCCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 046221 368 ALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM--GFLRDVVSWNTIIYGYGVNGHGETALALYHK 445 (572)
Q Consensus 368 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 445 (572)
+. ++-++....-+.+.+...++.++|.++++.. ..+.++....++...|.-.++++.|+.+|.+
T Consensus 284 -------------d~-fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRR 349 (478)
T KOG1129|consen 284 -------------DS-FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRR 349 (478)
T ss_pred -------------hc-CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHH
Confidence 21 1222222333445555666667777777666 2223445555556666667777777777777
Q ss_pred HHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhhCChhHHHHHHHhccC-CCC
Q 046221 446 MTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPS--QEHYGCVVDLLARAGCLSDASGLAGKLLE-GMG 522 (572)
Q Consensus 446 ~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~ 522 (572)
+++.|+. +...|+.+.-+|...+++|-++..|++++... -.|+ ..+|..+.......||+.-|.+.|+-... +++
T Consensus 350 iLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlsta-t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~ 427 (478)
T KOG1129|consen 350 ILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTA-TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ 427 (478)
T ss_pred HHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhc-cCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc
Confidence 7777643 45666666667777777777777777665332 2233 23677777777777777777777776655 333
Q ss_pred -hHHHHHHHHHHhhhcCCHHHHHHHHHHHHhCCCCC
Q 046221 523 -PNIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIK 557 (572)
Q Consensus 523 -~~~~~~l~~~~~~~~g~~~~A~~~~~~m~~~~~~~ 557 (572)
...++.|.-.-.+. |+.++|..++....+..+.-
T Consensus 428 h~ealnNLavL~~r~-G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 428 HGEALNNLAVLAARS-GDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred hHHHHHhHHHHHhhc-CchHHHHHHHHHhhhhCccc
Confidence 33555554444444 77777777777766655443
No 73
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.23 E-value=7.2e-08 Score=92.72 Aligned_cols=435 Identities=12% Similarity=-0.004 Sum_probs=222.1
Q ss_pred HHHcCCCCCcchHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCcccCCCCCCceeHHHHHHHHHhCCChHHHHHHHHHH
Q 046221 62 MMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFF 141 (572)
Q Consensus 62 m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 141 (572)
++...+.-|...|..+--++...|+++.+.+.|++....-+ .....|+.+...+...|.-..|..++++-
T Consensus 314 ~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~----------~~~e~w~~~als~saag~~s~Av~ll~~~ 383 (799)
T KOG4162|consen 314 LRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF----------GEHERWYQLALSYSAAGSDSKAVNLLRES 383 (799)
T ss_pred HHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh----------hhHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 33344555666677776677777777777777777665543 22346777777777777777777777665
Q ss_pred HhCCCCCCHhh-HHHHHHHHh-ccCChHHHHHHHHHHHHhc--C--CCChhHHhHHHHHHHhC-----------CCHHHH
Q 046221 142 RGSGLVPNAVT-MLTVIRGCV-ALGSRALCELIHGLTIKLG--L--ILDVSVNNSVLDMYSCL-----------MDLDAA 204 (572)
Q Consensus 142 ~~~~~~p~~~~-~~~ll~~~~-~~~~~~~a~~~~~~~~~~~--~--~~~~~~~~~l~~~~~~~-----------~~~~~a 204 (572)
......|+..+ +-..-+.|. +.+..+++..+-.+.+... . ......|-.+.-+|... ....++
T Consensus 384 ~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~ks 463 (799)
T KOG4162|consen 384 LKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKS 463 (799)
T ss_pred cccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHH
Confidence 54332343333 222223332 3345555555555554411 0 11222333333333211 112233
Q ss_pred HHHHhhcCC---CCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCccchHHHHHHhcccCChHHHHHHHHHHHHhC
Q 046221 205 IQIFREMEC---KDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281 (572)
Q Consensus 205 ~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 281 (572)
++.+++..+ .|+...-.+.--|+..++.+.|++..++..+-+-.-+...+..+.-.+...+++.+|+.+.+.....-
T Consensus 464 lqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~ 543 (799)
T KOG4162|consen 464 LQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF 543 (799)
T ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh
Confidence 444444322 12222222333344445555555555555554334444445444445555555555555554443311
Q ss_pred CCCCcchHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCH-hHHHHHH
Q 046221 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDS-ITLVSIL 360 (572)
Q Consensus 282 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~ll 360 (572)
..|-.....-+..-...++.+++......+.. .|... ....+.++-...+++...+.-..+.+.+. .++..+.
T Consensus 544 -~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~----~we~~-~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls 617 (799)
T KOG4162|consen 544 -GDNHVLMDGKIHIELTFNDREEALDTCIHKLA----LWEAE-YGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS 617 (799)
T ss_pred -hhhhhhchhhhhhhhhcccHHHHHHHHHHHHH----HHHhh-hhHhhhhhhhhhhhhhcccccCcccccccchhhHHHH
Confidence 00000000011111112333333222221110 00000 00011111112222222221011111111 1222221
Q ss_pred HHhcccccHHHHHHHHHHHHHhcCCCch--------hHHHHHHHHhhhcCChHHHHHHHHHc-CCCC-CHhHHHHHHHHH
Q 046221 361 TASGELAALEICLQLHGIAFEAGFPRYR--------SVQNCLISSYSKCGNVDLAYIVFEEM-GFLR-DVVSWNTIIYGY 430 (572)
Q Consensus 361 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~ 430 (572)
.-.... .+.+..-.. +......|.. ..|......+.+.+..++|...+.+. ++.| ....|......+
T Consensus 618 ~l~a~~--~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~ 694 (799)
T KOG4162|consen 618 SLVASQ--LKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLL 694 (799)
T ss_pred HHHHhh--hhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHH
Confidence 111100 000000000 1111112222 23445667788889999999888887 3333 455666666778
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHhccCChHHHHH--HHHHhHHhcCCCCChhHHHHHHHHHHhhCCh
Q 046221 431 GVNGHGETALALYHKMTETGEVPDS-STYLSILNACGHAGLTNDGLV--IFNQMIEENKVKPSQEHYGCVVDLLARAGCL 507 (572)
Q Consensus 431 ~~~~~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 507 (572)
...|..++|...|..... +.|+. .+...+...+.+.|+..-|.. ++.++++-. +.+...|..+...+.+.|+.
T Consensus 695 ~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d--p~n~eaW~~LG~v~k~~Gd~ 770 (799)
T KOG4162|consen 695 EVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD--PLNHEAWYYLGEVFKKLGDS 770 (799)
T ss_pred HHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHccch
Confidence 889999999999999888 78876 788899999999998887877 999998654 55677999999999999999
Q ss_pred hHHHHHHHhccC
Q 046221 508 SDASGLAGKLLE 519 (572)
Q Consensus 508 ~~A~~~~~~~~~ 519 (572)
+.|.+.|+...+
T Consensus 771 ~~Aaecf~aa~q 782 (799)
T KOG4162|consen 771 KQAAECFQAALQ 782 (799)
T ss_pred HHHHHHHHHHHh
Confidence 999999998776
No 74
>PRK12370 invasion protein regulator; Provisional
Probab=99.22 E-value=2.9e-09 Score=106.49 Aligned_cols=261 Identities=10% Similarity=-0.039 Sum_probs=169.5
Q ss_pred CChhhHHHHHHHHhh-----CCChHHHHHHHHHHHHcCCCCCc-chHHHHHHHHc---------CCCChHHHHHHHHHHH
Q 046221 34 KNVVSWSIVIHGYSI-----NGFHEKSMKAFSHMMLSGLLPNS-FTMVGVLVAAA---------GLQNLELARSIHGLMV 98 (572)
Q Consensus 34 ~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~---------~~g~~~~a~~~~~~~~ 98 (572)
.+...|...+.+... .+.+++|+..|++..+. .|+. ..|..+..++. ..+++++|...+++++
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 456666666665322 23467888888888865 4443 34444433322 3345788888888888
Q ss_pred HhcCCCCcccCCCCCCceeHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHH
Q 046221 99 KFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIK 178 (572)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 178 (572)
+..+ .+...+..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|...++..++
T Consensus 332 ~ldP----------~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~ 400 (553)
T PRK12370 332 ELDH----------NNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLK 400 (553)
T ss_pred hcCC----------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 8765 345677788888888899999999999888763 22455677777888888999999999999888
Q ss_pred hcCCCChhHHhHHHHHHHhCCCHHHHHHHHhhcCC---C-CcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCccch
Q 046221 179 LGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC---K-DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVAL 254 (572)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 254 (572)
.... +...+..++..+...|++++|...+++... | +...+..+..++...|++++|...+.++... .|+..+.
T Consensus 401 l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~ 477 (553)
T PRK12370 401 LDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIA 477 (553)
T ss_pred cCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHH
Confidence 6522 223333344456667888999988887643 3 3445677778888899999999998887554 3443333
Q ss_pred -HHHHHHhcccCChHHHHHHHHHHHHhCC-CCCcchHHHHHHHHHhcCChhHHHHHHhccCCC
Q 046221 255 -LNLISVNAILGDLKRGKQLHAQVVLGGL-QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK 315 (572)
Q Consensus 255 -~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 315 (572)
+.+...+...| +.+...++.+.+..- .+..... +-..|.-.|+-+.+... +++.+.
T Consensus 478 ~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 478 VNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 33444556666 477776766665321 2222222 33445555666666655 666543
No 75
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.20 E-value=2e-09 Score=92.40 Aligned_cols=192 Identities=16% Similarity=0.058 Sum_probs=150.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhh
Q 046221 321 TAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400 (572)
Q Consensus 321 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 400 (572)
+.+.++|.+.|.+.+|.+.|+.-. . -.|-+.+|-.|..+|.+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL-~-------------------------------------q~~~~dTfllLskvY~r 268 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSL-T-------------------------------------QFPHPDTFLLLSKVYQR 268 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHh-h-------------------------------------cCCchhHHHHHHHHHHH
Confidence 456677777777777777776654 1 14556677778889999
Q ss_pred cCChHHHHHHHHHc-CCCCCHhHH-HHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChHHHHHH
Q 046221 401 CGNVDLAYIVFEEM-GFLRDVVSW-NTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNACGHAGLTNDGLVI 477 (572)
Q Consensus 401 ~g~~~~A~~~~~~~-~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~ 477 (572)
..+++.|+.++.+- ...|..+|| ..+...+-..++.++|.++|+...+. .| +......+...|.-.++++-|+.+
T Consensus 269 idQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~--~~~nvEaiAcia~~yfY~~~PE~Alry 346 (478)
T KOG1129|consen 269 IDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL--HPINVEAIACIAVGYFYDNNPEMALRY 346 (478)
T ss_pred hccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc--CCccceeeeeeeeccccCCChHHHHHH
Confidence 99999999999987 444655555 45667788889999999999999985 44 567788888889999999999999
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC---CCCh--HHHHHHHHHHhhhcCCHHHHHHHHHHHHh
Q 046221 478 FNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE---GMGP--NIWRALLSGCVLHVGRFQDAEALRSGSQK 552 (572)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~--~~~~~l~~~~~~~~g~~~~A~~~~~~m~~ 552 (572)
++++++. |+ -++..|..+.-+|.-.+.++-++.-|+++.. .|+. .+|..+-...... |++.-|.+.|+-...
T Consensus 347 YRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~i-GD~nlA~rcfrlaL~ 423 (478)
T KOG1129|consen 347 YRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTI-GDFNLAKRCFRLALT 423 (478)
T ss_pred HHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEec-cchHHHHHHHHHHhc
Confidence 9999854 44 5778999999999999999999999998876 3443 3688887766656 999999888887655
Q ss_pred CCC
Q 046221 553 KGI 555 (572)
Q Consensus 553 ~~~ 555 (572)
.+.
T Consensus 424 ~d~ 426 (478)
T KOG1129|consen 424 SDA 426 (478)
T ss_pred cCc
Confidence 443
No 76
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.20 E-value=2.1e-07 Score=89.94 Aligned_cols=298 Identities=12% Similarity=0.058 Sum_probs=153.9
Q ss_pred HHHHHhhcCChhhHHHHhccCCC--CC-hhhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHH-HHHc----
Q 046221 11 LLSNYFKSGKIKEAENLFDEIPE--KN-VVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVL-VAAA---- 82 (572)
Q Consensus 11 l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll-~~~~---- 82 (572)
....+..+|++++|++.++.... .| ..........+.+.|+.++|..+|..+.+. .|+...|...+ .++.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcc
Confidence 45677888999999999987654 34 445566677888999999999999999987 45555554444 4442
Q ss_pred -CCCChHHHHHHHHHHHHhcCCCCcccCCCCCCceeHHHHHHHHHhCCChH-HHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 046221 83 -GLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQ-QAVLLFNFFRGSGLVPNAVTMLTVIRGC 160 (572)
Q Consensus 83 -~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 160 (572)
...+.+....+++.+...-+..+ +...+.-.+.....+. .+...+..+...|+++ +|+.+-..|
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp~s~-----------~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly 153 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYPRSD-----------APRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLY 153 (517)
T ss_pred cccccHHHHHHHHHHHHHhCcccc-----------chhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHH
Confidence 12356677777777766553211 2222221222222232 3445556666667543 444444444
Q ss_pred hccCChHHHHHHHHHHHHhcCCCChhHHhHHHHHHHhCCCHHHHHHHHhhcCCCCc--ccHHHHHHHHHccCCHHHHHHH
Q 046221 161 VALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV--ISWTRMMGLFVDFEYAGDALKI 238 (572)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~ 238 (572)
.......-..+++.......- ..+.+.... -..-..|.. .++..+...|...|++++|+++
T Consensus 154 ~d~~K~~~i~~l~~~~~~~l~---------------~~~~~~~~~--~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~ 216 (517)
T PF12569_consen 154 KDPEKAAIIESLVEEYVNSLE---------------SNGSFSNGD--DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEY 216 (517)
T ss_pred cChhHHHHHHHHHHHHHHhhc---------------ccCCCCCcc--ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 433333334444444332210 000000000 000001222 1223344455555555555555
Q ss_pred HHHHHhCCCCCC-ccchHHHHHHhcccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHHHHHHhccCCCCc
Q 046221 239 FREMRKSRIICD-TVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSL 317 (572)
Q Consensus 239 ~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 317 (572)
+++.++. .|+ +..|..-.+.+-+.|++.+|...++.....+ ..|..+-+..+..+.+.|++++|.+++.....++.
T Consensus 217 Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 217 IDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 5555543 233 3344444555555566666655555555544 33444444455555566666666665555544331
Q ss_pred c----------hH--HHHHHHHHHcCChHHHHHHHHHHH
Q 046221 318 V----------SW--TAIISGYVQNGCAREALNQFIKMR 344 (572)
Q Consensus 318 ~----------~~--~~l~~~~~~~~~~~~a~~~~~~~~ 344 (572)
. .| .....+|.+.|++..|++.|..+.
T Consensus 294 ~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 294 DPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred CcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 1 12 223455666666666666555443
No 77
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.18 E-value=9.5e-09 Score=97.82 Aligned_cols=128 Identities=14% Similarity=0.073 Sum_probs=77.3
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHc------CCCC----CHhHHHHHHHHHHhcCChHHHHHHHHHHHhcC------CCCC
Q 046221 391 QNCLISSYSKCGNVDLAYIVFEEM------GFLR----DVVSWNTIIYGYGVNGHGETALALYHKMTETG------EVPD 454 (572)
Q Consensus 391 ~~~l~~~~~~~g~~~~A~~~~~~~------~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g------~~p~ 454 (572)
++.+...++..+++++|..+++.. -..+ -..+++.|...|.+.|++++|.+++++++... ..+.
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChh
Confidence 344556666677777777766655 0111 13556777777777777777777777765421 1222
Q ss_pred -HHHHHHHHHHHhccCChHHHHHHHHHhHH---hcCC-CCC-hhHHHHHHHHHHhhCChhHHHHHHHhcc
Q 046221 455 -SSTYLSILNACGHAGLTNDGLVIFNQMIE---ENKV-KPS-QEHYGCVVDLLARAGCLSDASGLAGKLL 518 (572)
Q Consensus 455 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 518 (572)
...++.+...|.+.+++.+|.++|.+... ..|. .|+ ..+|..|...|.+.|++++|.++.+...
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 24566677777777777777777665421 1111 122 2367777777777777777777766654
No 78
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=2.8e-07 Score=82.14 Aligned_cols=303 Identities=11% Similarity=-0.046 Sum_probs=216.7
Q ss_pred CCCCCccchHHHHHHhcc--cCChHHHHHHHHHHHH-hCCCCCcchHHHHHHHHHhcCChhHHHHHHhccCCCCcchH--
Q 046221 246 RIICDTVALLNLISVNAI--LGDLKRGKQLHAQVVL-GGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSW-- 320 (572)
Q Consensus 246 ~~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-- 320 (572)
.++|...+...-+.+++. .++-..+.+.+-.+.. .-++.+......+..++...|+.++|+..|++...-|+.+.
T Consensus 189 ~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~ 268 (564)
T KOG1174|consen 189 TVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEA 268 (564)
T ss_pred ecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhh
Confidence 344555555555555433 3444444444444433 33577788889999999999999999999998876554433
Q ss_pred -HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhh
Q 046221 321 -TAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399 (572)
Q Consensus 321 -~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 399 (572)
......+.+.|+.++...+...+. . ...-....|..-+...-..++++.|..+-++.++.. +.+...+-.-...+.
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf-~-~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~ 345 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLF-A-KVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLI 345 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHH-h-hhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHH
Confidence 233445678889988888888875 2 122223333334444556778889998888877654 344555555567788
Q ss_pred hcCChHHHHHHHHHc-CCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHH-HHH-hccCChHHHH
Q 046221 400 KCGNVDLAYIVFEEM-GFLR-DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL-NAC-GHAGLTNDGL 475 (572)
Q Consensus 400 ~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~-~~~-~~~g~~~~a~ 475 (572)
..|+.++|.-.|+.. ...| +...|..|+.+|...|++.+|.-+-++..+. +..+..+.+.+. ..| ....--++|.
T Consensus 346 ~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 346 ALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred hccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHH
Confidence 899999999999988 5544 6889999999999999999999888877664 344556766663 333 3334467899
Q ss_pred HHHHHhHHhcCCCCC-hhHHHHHHHHHHhhCChhHHHHHHHhccC-CCChHHHHHHHHHHhhhcCCHHHHHHHHHHHHhC
Q 046221 476 VIFNQMIEENKVKPS-QEHYGCVVDLLARAGCLSDASGLAGKLLE-GMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKK 553 (572)
Q Consensus 476 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~g~~~~A~~~~~~m~~~ 553 (572)
++++..++ +.|+ ......+.+.+.+.|..+++..++++... .||.+.-+.|...+... +.+.+|.+.|....+.
T Consensus 425 kf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~-Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 425 KFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQ-NEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHh-hhHHHHHHHHHHHHhc
Confidence 99998764 3455 34677888999999999999999999877 88888888887777766 9999999999888766
Q ss_pred CCC
Q 046221 554 GII 556 (572)
Q Consensus 554 ~~~ 556 (572)
+++
T Consensus 501 dP~ 503 (564)
T KOG1174|consen 501 DPK 503 (564)
T ss_pred Ccc
Confidence 654
No 79
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.16 E-value=3.5e-09 Score=100.74 Aligned_cols=191 Identities=16% Similarity=0.122 Sum_probs=135.3
Q ss_pred HHhcccccHHHHHHHHHHHHHh-----c--CCCchhHHHHHHHHhhhcCChHHHHHHHHHc--------CC-CCCH-hHH
Q 046221 361 TASGELAALEICLQLHGIAFEA-----G--FPRYRSVQNCLISSYSKCGNVDLAYIVFEEM--------GF-LRDV-VSW 423 (572)
Q Consensus 361 ~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~-~~~~-~~~ 423 (572)
..|...+++++|..+|+.+... | .+.-..+++.|..+|.+.|++++|...+++. +. .|.+ ..+
T Consensus 249 ~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l 328 (508)
T KOG1840|consen 249 LVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQL 328 (508)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHH
Confidence 3444444444444444444332 1 1222455677778889999998888887766 22 1232 335
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhc---CCCCC----HHHHHHHHHHHhccCChHHHHHHHHHhHHhc----C-CCCC-
Q 046221 424 NTIIYGYGVNGHGETALALYHKMTET---GEVPD----SSTYLSILNACGHAGLTNDGLVIFNQMIEEN----K-VKPS- 490 (572)
Q Consensus 424 ~~l~~~~~~~~~~~~A~~~~~~~~~~---g~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~-~~~~- 490 (572)
+.+...|...+++++|..++++..+. -..++ ..++..|...|...|++++|.+++++++... | ..+.
T Consensus 329 ~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~ 408 (508)
T KOG1840|consen 329 SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGV 408 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhh
Confidence 66777889999999999999876652 11222 2679999999999999999999999987653 1 1222
Q ss_pred hhHHHHHHHHHHhhCChhHHHHHHHhccC-----CCCh----HHHHHHHHHHhhhcCCHHHHHHHHHHHHh
Q 046221 491 QEHYGCVVDLLARAGCLSDASGLAGKLLE-----GMGP----NIWRALLSGCVLHVGRFQDAEALRSGSQK 552 (572)
Q Consensus 491 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~----~~~~~l~~~~~~~~g~~~~A~~~~~~m~~ 552 (572)
...++.+...|.+.+++.+|.++|.+... .|+. .+|..|...|... |++++|.++.+....
T Consensus 409 ~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~-g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 409 GKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQ-GNYEAAEELEEKVLN 478 (508)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHc-ccHHHHHHHHHHHHH
Confidence 34688899999999999999999998654 3332 3588899999877 999999999998863
No 80
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.13 E-value=9e-07 Score=84.79 Aligned_cols=285 Identities=15% Similarity=0.122 Sum_probs=131.7
Q ss_pred HHHHHHHhCCCHHHHHHHHhhcC--CCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCccchHHHHHHhcccCCh
Q 046221 190 SVLDMYSCLMDLDAAIQIFREME--CKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDL 267 (572)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 267 (572)
+.|..|.+.|..-.|.+....-. ..|......+..++.+..-+++|-++|+++.. +...+.++.+-.-+
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkale~fkkgdaf 690 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAF 690 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHH
Confidence 34666777777666655442221 24555555566666666666666666665532 11222222222223
Q ss_pred HHHHHHHHHHHHhCCCCCcchH-HHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 046221 268 KRGKQLHAQVVLGGLQSELRLS-NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE 346 (572)
Q Consensus 268 ~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 346 (572)
.+|.++-+-. ++...+.. ..-...+...|+++.|...|-+.. ..-..+.+-.....+.+|+.+++.+. .
T Consensus 691 ~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~-----~~~kaieaai~akew~kai~ildniq-d 760 (1636)
T KOG3616|consen 691 GKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNIQ-D 760 (1636)
T ss_pred HHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHhh-h
Confidence 3333322211 11111100 111222333444555544443221 11222334444555666666666554 2
Q ss_pred CCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc-CCCCCHhHHHH
Q 046221 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFLRDVVSWNT 425 (572)
Q Consensus 347 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~ 425 (572)
. +.....|..+...|+..|+++.|.++|-+. ..++--|.+|.+.|++++|.++-.+. +-......|-+
T Consensus 761 q--k~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yia 829 (1636)
T KOG3616|consen 761 Q--KTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIA 829 (1636)
T ss_pred h--ccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHH
Confidence 1 122234555556666666666666665322 12233456666666666666666655 33333444444
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhC
Q 046221 426 IIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAG 505 (572)
Q Consensus 426 l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 505 (572)
-..-+-++|++.+|.++|-.+. .|+. .|..|-+.|..++.+++.++- +| ..-..|...+..-|...|
T Consensus 830 kaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~---h~-d~l~dt~~~f~~e~e~~g 896 (1636)
T KOG3616|consen 830 KAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKH---HG-DHLHDTHKHFAKELEAEG 896 (1636)
T ss_pred hHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHh---Ch-hhhhHHHHHHHHHHHhcc
Confidence 4444555666666655553322 2332 234455555555555555422 10 111224444455555555
Q ss_pred ChhHHHHHHHhc
Q 046221 506 CLSDASGLAGKL 517 (572)
Q Consensus 506 ~~~~A~~~~~~~ 517 (572)
+...|++-|-++
T Consensus 897 ~lkaae~~flea 908 (1636)
T KOG3616|consen 897 DLKAAEEHFLEA 908 (1636)
T ss_pred ChhHHHHHHHhh
Confidence 555555544443
No 81
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.11 E-value=2.6e-07 Score=89.39 Aligned_cols=285 Identities=11% Similarity=0.031 Sum_probs=198.0
Q ss_pred HHHHHhCCChHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHHHHHHhC--
Q 046221 122 VAGFINNKLFQQAVLLFNFFRGSGLVPNAV-TMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCL-- 198 (572)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 198 (572)
...+...|++++|++.++.-... .+|.. .+......+.+.|+.++|..++..+++.+ +.+...|..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcc
Confidence 35567889999999999875543 44554 45566677899999999999999999987 56666677777766332
Q ss_pred ---CCHHHHHHHHhhcCC--CCcccHHHHHHHHHccCCHH-HHHHHHHHHHhCCCCCCccchHHHHHHhcccCChHHHHH
Q 046221 199 ---MDLDAAIQIFREMEC--KDVISWTRMMGLFVDFEYAG-DALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQ 272 (572)
Q Consensus 199 ---~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~-~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 272 (572)
.+.+....+++++.. |...+...+.-.+.....+. .+..++..+...|+++ +|+.+-..|......+-...
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence 256777788887765 33232222322222222232 3556677777888654 56666666665555555666
Q ss_pred HHHHHHHhC--------------CCCCcc--hHHHHHHHHHhcCChhHHHHHHhccCCCCc---chHHHHHHHHHHcCCh
Q 046221 273 LHAQVVLGG--------------LQSELR--LSNSIIAMYSKCGDLDSSRSVFNQITEKSL---VSWTAIISGYVQNGCA 333 (572)
Q Consensus 273 ~~~~~~~~~--------------~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~ 333 (572)
++......- -+|+.. ++.-+...|-..|++++|..++++..+.++ ..|..-...+-..|++
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCH
Confidence 666554321 123332 335567778899999999999998876433 4677778889999999
Q ss_pred HHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHH--------HHHHHHhhhcCChH
Q 046221 334 REALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQ--------NCLISSYSKCGNVD 405 (572)
Q Consensus 334 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~g~~~ 405 (572)
.+|.+.++... .-..-|...-+.....+.+.|+++.|.+++....+.+..|....+ .....+|.+.|++.
T Consensus 245 ~~Aa~~~~~Ar--~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 245 KEAAEAMDEAR--ELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HHHHHHHHHHH--hCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999984 445557777777888889999999999999988877754433322 34567888999999
Q ss_pred HHHHHHHHc
Q 046221 406 LAYIVFEEM 414 (572)
Q Consensus 406 ~A~~~~~~~ 414 (572)
.|++.|..+
T Consensus 323 ~ALk~~~~v 331 (517)
T PF12569_consen 323 LALKRFHAV 331 (517)
T ss_pred HHHHHHHHH
Confidence 888776655
No 82
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.10 E-value=1.1e-06 Score=84.34 Aligned_cols=49 Identities=12% Similarity=-0.018 Sum_probs=25.7
Q ss_pred HHHHHHHHHhhCChhHHHHHHHhccCCCChHHHHHHHHHHhhhcCCHHHHHHHHHH
Q 046221 494 YGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSG 549 (572)
Q Consensus 494 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~A~~~~~~ 549 (572)
+..-.+.....|++.+|+-++-++. +|+.. +..+... +-|.+|+++.+.
T Consensus 1082 ~tgqar~aiee~d~~kae~fllran-kp~i~-----l~yf~e~-~lw~dalri~kd 1130 (1636)
T KOG3616|consen 1082 LTGQARGAIEEGDFLKAEGFLLRAN-KPDIA-----LNYFIEA-ELWPDALRIAKD 1130 (1636)
T ss_pred HhhhhhccccccchhhhhhheeecC-CCchH-----HHHHHHh-ccChHHHHHHHh
Confidence 3333444456667777766665554 45532 1222223 677777666543
No 83
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.09 E-value=2.4e-07 Score=78.88 Aligned_cols=195 Identities=8% Similarity=0.034 Sum_probs=89.0
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCcccCCCCCCceeH
Q 046221 39 WSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSC 118 (572)
Q Consensus 39 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (572)
+++++..+.+..++.+|++++..-.++. +.+....+.+..+|....++..|...++++.+..+. ..-|
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~-----------~~qY 80 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPE-----------LEQY 80 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChH-----------HHHH
Confidence 4555555555666666666665555442 223444445555555555666666666555544321 1122
Q ss_pred H-HHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHHHHHHh
Q 046221 119 N-AIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSC 197 (572)
Q Consensus 119 ~-~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 197 (572)
. --...+.+.+.+..|+++...|... |+...-..-+.+. ....
T Consensus 81 rlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaA---------------------------------IkYs 124 (459)
T KOG4340|consen 81 RLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAA---------------------------------IKYS 124 (459)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHH---------------------------------Hhcc
Confidence 2 1123444555555555555555431 1111111111111 1122
Q ss_pred CCCHHHHHHHHhhcCC-CCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCccchHHHHHHhcccCChHHHHHHHHH
Q 046221 198 LMDLDAAIQIFREMEC-KDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQ 276 (572)
Q Consensus 198 ~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 276 (572)
.+++..+..+.++.+. .+..+.+.......+.|+++.|.+-|+...+-+---....|+..+ +..+.|+.+.|.+...+
T Consensus 125 e~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSE 203 (459)
T KOG4340|consen 125 EGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISE 203 (459)
T ss_pred cccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHH
Confidence 3455555555555542 333444444444445555555555555554433222233343332 33344555555555555
Q ss_pred HHHhCC
Q 046221 277 VVLGGL 282 (572)
Q Consensus 277 ~~~~~~ 282 (572)
+.++|+
T Consensus 204 IieRG~ 209 (459)
T KOG4340|consen 204 IIERGI 209 (459)
T ss_pred HHHhhh
Confidence 555554
No 84
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.07 E-value=1.5e-08 Score=91.09 Aligned_cols=222 Identities=11% Similarity=0.056 Sum_probs=139.1
Q ss_pred HHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-CCHhHHHHHHHHhccccc
Q 046221 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDS-VDSITLVSILTASGELAA 368 (572)
Q Consensus 290 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~ 368 (572)
..+.+++...|+.+.+..-...-..|.......+...+...++-+.++.-+++.. ..... .+..........+...|+
T Consensus 39 ~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~-~~~~~~~~~~~~~~~A~i~~~~~~ 117 (290)
T PF04733_consen 39 FYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELL-ADQAGESNEIVQLLAATILFHEGD 117 (290)
T ss_dssp HHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCC-CTS---CHHHHHHHHHHHHCCCCH
T ss_pred HHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHH-HhccccccHHHHHHHHHHHHHcCC
Confidence 3456667777777766555544444555555444443333344455555555443 22222 333333334455667788
Q ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc-CCCCCHhHHHHHHHHHH----hcCChHHHHHHH
Q 046221 369 LEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFLRDVVSWNTIIYGYG----VNGHGETALALY 443 (572)
Q Consensus 369 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~----~~~~~~~A~~~~ 443 (572)
++.|.+++... .+.......+.+|.+.++++.|.+.++.| ....|. +...+..++. -.+.+.+|..+|
T Consensus 118 ~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f 190 (290)
T PF04733_consen 118 YEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDS-ILTQLAEAWVNLATGGEKYQDAFYIF 190 (290)
T ss_dssp HHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred HHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 88888877532 34566667788888999999999999888 444443 3333444433 234688999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCCh-hHHHHHHHhccC-CC
Q 046221 444 HKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCL-SDASGLAGKLLE-GM 521 (572)
Q Consensus 444 ~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~-~~ 521 (572)
+++.+. ..++..+.+.+..++...|++++|.++++++++.. +-+..++..++.+....|+. +.+.+++.++.. .|
T Consensus 191 ~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~--~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 191 EELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD--PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp HHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred HHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 998765 56777888888888899999999999998886543 44566777788887888877 667788888876 55
Q ss_pred C
Q 046221 522 G 522 (572)
Q Consensus 522 ~ 522 (572)
+
T Consensus 268 ~ 268 (290)
T PF04733_consen 268 N 268 (290)
T ss_dssp T
T ss_pred C
Confidence 4
No 85
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.05 E-value=1.7e-07 Score=85.71 Aligned_cols=221 Identities=12% Similarity=-0.032 Sum_probs=136.7
Q ss_pred cCChhHHHHHHhccCCC---C----cchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHH
Q 046221 299 CGDLDSSRSVFNQITEK---S----LVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEI 371 (572)
Q Consensus 299 ~~~~~~a~~~~~~~~~~---~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 371 (572)
.+..+.++.-+.++... + ...|..+...+...|+.++|...|++..+ ..+.+...+..+...+...|+++.
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALA--LRPDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHCCCHHH
Confidence 35556666666665531 1 23566777778888888888888888752 234456777788888888888888
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc-CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 046221 372 CLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450 (572)
Q Consensus 372 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g 450 (572)
|...++...+.. +.+...+..+..++...|++++|.+.|+.. ...|+..........+...+++++|...+.+....
T Consensus 117 A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~- 194 (296)
T PRK11189 117 AYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK- 194 (296)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-
Confidence 888888887654 334566666777788888888888888877 44454322222222234466788888888665543
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCC-----CChhHHHHHHHHHHhhCChhHHHHHHHhccC-C-CCh
Q 046221 451 EVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVK-----PSQEHYGCVVDLLARAGCLSDASGLAGKLLE-G-MGP 523 (572)
Q Consensus 451 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~ 523 (572)
..|+...+ .+. ....|+...+ +.++.+.+..... .....|..+...+.+.|++++|...|+++.. . |+.
T Consensus 195 ~~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 195 LDKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred CCccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 23333222 222 2334554443 3444443211111 1234677788888888888888888888776 3 344
Q ss_pred HHHH
Q 046221 524 NIWR 527 (572)
Q Consensus 524 ~~~~ 527 (572)
.-+.
T Consensus 271 ~e~~ 274 (296)
T PRK11189 271 VEHR 274 (296)
T ss_pred HHHH
Confidence 4444
No 86
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.04 E-value=3.2e-07 Score=90.78 Aligned_cols=160 Identities=13% Similarity=-0.008 Sum_probs=102.8
Q ss_pred chhhHHHHHhhcCChhhHHHHhccCCC---CChhhHHHHHHHHhhCCChHHHHHHHHHHHHcC-CCCCcchHHHHHHHHc
Q 046221 7 NSSKLLSNYFKSGKIKEAENLFDEIPE---KNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSG-LLPNSFTMVGVLVAAA 82 (572)
Q Consensus 7 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~ 82 (572)
.|..|...|+...+...|.+.|+..-+ .+..++......|+...+++.|..+.-..-+.. ...-...|..+.-.+-
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyL 573 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYL 573 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccccc
Confidence 456677777777777777777776655 345567777777777778887777732222211 0011112223333344
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCcccCCCCCCceeHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH--H
Q 046221 83 GLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG--C 160 (572)
Q Consensus 83 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~--~ 160 (572)
+.++...+..-|+...+..+ .|..+|..++.+|.+.|++..|+++|.+.... .|+. +|...-.+ -
T Consensus 574 ea~n~h~aV~~fQsALR~dP----------kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~e 640 (1238)
T KOG1127|consen 574 EAHNLHGAVCEFQSALRTDP----------KDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVME 640 (1238)
T ss_pred CccchhhHHHHHHHHhcCCc----------hhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHH
Confidence 66777777777777776665 66778889999999999999999999887653 4443 33322222 3
Q ss_pred hccCChHHHHHHHHHHHHh
Q 046221 161 VALGSRALCELIHGLTIKL 179 (572)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~ 179 (572)
+..|.+.++...+...+..
T Consensus 641 cd~GkYkeald~l~~ii~~ 659 (1238)
T KOG1127|consen 641 CDNGKYKEALDALGLIIYA 659 (1238)
T ss_pred HHhhhHHHHHHHHHHHHHH
Confidence 5678888888888777653
No 87
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.03 E-value=1.5e-07 Score=77.30 Aligned_cols=200 Identities=14% Similarity=0.056 Sum_probs=134.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhh
Q 046221 320 WTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399 (572)
Q Consensus 320 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 399 (572)
...+.-+|.+.|+...|.+-+++.. ...+-+..++..+...|.+.|..+.|.+.|+...... +-+..+.|.....+|
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL--~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKAL--EHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH--HhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 3345556666666666666666664 2233344455555556666666666666666655543 445566677777788
Q ss_pred hcCChHHHHHHHHHc----CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHhccCChHHH
Q 046221 400 KCGNVDLAYIVFEEM----GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS-STYLSILNACGHAGLTNDG 474 (572)
Q Consensus 400 ~~g~~~~A~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~a 474 (572)
..|++++|...|++. ....-..+|..+.-+..+.|+.+.|...|++.++ ..|+. .+...+.....+.|++..|
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHH
Confidence 888888888888877 1212346777777777888888888888888888 45644 6777788888888888888
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC-CCChHHH
Q 046221 475 LVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE-GMGPNIW 526 (572)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~ 526 (572)
..+++... .. ..++....-..|+.-.+.|+.+.|-++=..+.. .|...-+
T Consensus 193 r~~~~~~~-~~-~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 193 RLYLERYQ-QR-GGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HHHHHHHH-hc-ccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 88888774 33 237777777777777788888877776655554 4444433
No 88
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.98 E-value=4.1e-07 Score=74.82 Aligned_cols=193 Identities=14% Similarity=0.049 Sum_probs=146.7
Q ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc-CCCC-CHhHHHHHHHHHHh
Q 046221 355 TLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFLR-DVVSWNTIIYGYGV 432 (572)
Q Consensus 355 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~ 432 (572)
+..-+.-.|...|+...|..-+++..++. +.+..++..+...|-+.|+.+.|.+.|++. ...| +-...|....-+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 44556667888999999999999988876 566778888889999999999999999987 4444 45677777778888
Q ss_pred cCChHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHH
Q 046221 433 NGHGETALALYHKMTETGEVPD-SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDAS 511 (572)
Q Consensus 433 ~~~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 511 (572)
.|++++|...|++....-.-|. ..||..+.-+..+.|+.+.|...|++.++.. +-.......+.....+.|++-.|.
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD--PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--cCCChHHHHHHHHHHhcccchHHH
Confidence 9999999999999887533333 3788888888889999999999999988644 334456777888888999999999
Q ss_pred HHHHhccC--CCChHHHHHHHHHHhhhcCCHHHHHHHHHHHH
Q 046221 512 GLAGKLLE--GMGPNIWRALLSGCVLHVGRFQDAEALRSGSQ 551 (572)
Q Consensus 512 ~~~~~~~~--~~~~~~~~~l~~~~~~~~g~~~~A~~~~~~m~ 551 (572)
.++++... .+...+....+..-... |+-+.|-+.=..+.
T Consensus 194 ~~~~~~~~~~~~~A~sL~L~iriak~~-gd~~~a~~Y~~qL~ 234 (250)
T COG3063 194 LYLERYQQRGGAQAESLLLGIRIAKRL-GDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHh-ccHHHHHHHHHHHH
Confidence 99998876 55555555445544444 88766665544443
No 89
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.97 E-value=3.5e-05 Score=75.29 Aligned_cols=230 Identities=14% Similarity=0.046 Sum_probs=127.4
Q ss_pred HHhhcCChhhHHHHhccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHHHHc-C--------CCCCcchHHHHHHHHcCC
Q 046221 14 NYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS-G--------LLPNSFTMVGVLVAAAGL 84 (572)
Q Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~--------~~~~~~~~~~ll~~~~~~ 84 (572)
.|..-|+.+.|.+-.+.+. +-..|..|.+.+.+.++.+-|.-.+..|... | -.|+ .+-..+.-.....
T Consensus 737 fyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieL 813 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIEL 813 (1416)
T ss_pred EEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHH
Confidence 3555677777777665554 3457888888888888888777776666431 1 1222 2222222233467
Q ss_pred CChHHHHHHHHHHHHhcCCCCcccCCCCCCceeHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC
Q 046221 85 QNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164 (572)
Q Consensus 85 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 164 (572)
|.+++|+.++.+.++.. .|=+.|-..|.|++|+++-+.=-+-.+ ..||..-..-+...+
T Consensus 814 gMlEeA~~lYr~ckR~D------------------LlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKRYD------------------LLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARR 872 (1416)
T ss_pred hhHHHHHHHHHHHHHHH------------------HHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhc
Confidence 88888888887776643 334556667888888877654322111 234444445555566
Q ss_pred ChHHHHHHHHHHHHh----------c---------CCCChhHHhHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHH
Q 046221 165 SRALCELIHGLTIKL----------G---------LILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGL 225 (572)
Q Consensus 165 ~~~~a~~~~~~~~~~----------~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~ 225 (572)
+.+.|.+.|+..-.+ . -..|...|.-....+-..|+.+.|+.+|...+ -|-++++.
T Consensus 873 Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-----D~fs~VrI 947 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK-----DYFSMVRI 947 (1416)
T ss_pred cHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-----hhhhheee
Confidence 677776666542111 0 01222333333333344566666666665542 24445555
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCccchHHHHHHhcccCChHHHHHHHHHHH
Q 046221 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVV 278 (572)
Q Consensus 226 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 278 (572)
.+-.|+.++|-++-++- -|....-.+.+.|-..|++.+|..+|....
T Consensus 948 ~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 948 KCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred EeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 55556666665555442 234444455666666666666666665544
No 90
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=2.2e-05 Score=78.38 Aligned_cols=331 Identities=15% Similarity=0.124 Sum_probs=188.6
Q ss_pred hhhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCcccCCCCCCc
Q 046221 36 VVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYL 115 (572)
Q Consensus 36 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (572)
+..|..+..+-.+.|...+|++-|-+ .-|+..|..++....+.|.+++-.+.+....+..-. |
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E---------~-- 1166 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE---------P-- 1166 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC---------c--
Confidence 45566677776777777777666554 345566777777777777777777666655554432 2
Q ss_pred eeHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHHHHH
Q 046221 116 VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMY 195 (572)
Q Consensus 116 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 195 (572)
..=..||-+|++.++..+..+.+ .-|+......+-.-|...+.++.|.-++.. ++-|..|...+
T Consensus 1167 ~id~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TL 1230 (1666)
T KOG0985|consen 1167 YIDSELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTL 1230 (1666)
T ss_pred cchHHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHH
Confidence 23456677777777666544332 246666666666667777777766666543 33455666666
Q ss_pred HhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCccchHHHHHHhcccCChHHHHHHHH
Q 046221 196 SCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHA 275 (572)
Q Consensus 196 ~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 275 (572)
+..|++..|...-++. .+..+|-.+-.+|...+.+.-| +|.-.++.....-...++..|-..|-+++...+++
T Consensus 1231 V~LgeyQ~AVD~aRKA--ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~E 1303 (1666)
T KOG0985|consen 1231 VYLGEYQGAVDAARKA--NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLE 1303 (1666)
T ss_pred HHHHHHHHHHHHhhhc--cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHH
Confidence 6777777766655443 4556777777777766554433 22222233344455567777777777777777776
Q ss_pred HHHHhCCCCCcchHHHHHHHHHhcCChhHHHHH---H-hccCCC-------CcchHHHHHHHHHHcCChHHHHHHHHHHH
Q 046221 276 QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSV---F-NQITEK-------SLVSWTAIISGYVQNGCAREALNQFIKMR 344 (572)
Q Consensus 276 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~---~-~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 344 (572)
..+... ......|+-|.-.|++-. +++..+. | .++.-| ....|+-+...|.+-..++.|.-.. |.
T Consensus 1304 a~LGLE-RAHMgmfTELaiLYskyk-p~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~tm--m~ 1379 (1666)
T KOG0985|consen 1304 AGLGLE-RAHMGMFTELAILYSKYK-PEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAALTM--ME 1379 (1666)
T ss_pred hhhchh-HHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH--Hh
Confidence 544221 223445666666666532 3333222 2 222111 1246777777777777776664322 22
Q ss_pred hcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHcCCCC
Q 046221 345 QEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLR 418 (572)
Q Consensus 345 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 418 (572)
......+...|.-++.-.+...-+-+|.+++- .-.+...+-++..+.-.=+...+..+|.+.+..|
T Consensus 1380 -h~teaw~~~~FKdii~kVaNvElyYkAi~FYl-------~~~P~llnDlL~vL~pRlDh~r~v~~f~K~~~lp 1445 (1666)
T KOG0985|consen 1380 -HPTEAWDHGQFKDIITKVANVELYYKAIQFYL-------DFHPLLLNDLLTVLSPRLDHTRTVSIFSKAGQLP 1445 (1666)
T ss_pred -CChhhhhhhhHHHHHHHHhhHHHHHHHHHHHH-------HhChHHHHHHHHhcccccCchHHHHHHHhcCCCc
Confidence 22333344455555555555444555555442 2223445566666666667777777777774434
No 91
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=7.3e-06 Score=76.14 Aligned_cols=212 Identities=16% Similarity=0.074 Sum_probs=95.4
Q ss_pred HHHHHhcccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHHHHHHhccCCCCcc----------hHHHHHH
Q 046221 256 NLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLV----------SWTAIIS 325 (572)
Q Consensus 256 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------~~~~l~~ 325 (572)
.+..+.-+..+++.+.+-+....... .+...++....+|...|.+..+...-....+.+.. +...+..
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 34444445555555665555555544 34444455555666666655555444433322111 1111223
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChH
Q 046221 326 GYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405 (572)
Q Consensus 326 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 405 (572)
+|.+.++++.++..|.+.. .....|+.. .+....+++........-.+... ..-...-...+.+.|++.
T Consensus 307 a~~k~~~~~~ai~~~~kaL-te~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~ 375 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKAL-TEHRTPDLL---------SKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYP 375 (539)
T ss_pred hhhhHHhHHHHHHHHHHHh-hhhcCHHHH---------HHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHH
Confidence 4444555566666665544 222222211 11112222222222111111000 000111134455556666
Q ss_pred HHHHHHHHc--CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHhH
Q 046221 406 LAYIVFEEM--GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS-STYLSILNACGHAGLTNDGLVIFNQMI 482 (572)
Q Consensus 406 ~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~ 482 (572)
.|.+.+.++ ..+-|...|....-+|.+.|.+..|++-.+..++ +.|+. ..|..=..++....+++.|.+.|.+.+
T Consensus 376 ~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie--L~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 376 EAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIE--LDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666655 3333455566666666666666666665555555 24433 334444444445555666666666554
No 92
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.94 E-value=2.1e-05 Score=76.78 Aligned_cols=269 Identities=12% Similarity=0.091 Sum_probs=158.0
Q ss_pred CChhhHHHHHH--HHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCcccCCC
Q 046221 34 KNVVSWSIVIH--GYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLK 111 (572)
Q Consensus 34 ~~~~~~~~li~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 111 (572)
=|..+-.++++ .|..-|+.+.|.+-.+-+.. ...|..+.+.|.+.++++-|+-.+..|.........-...+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 46777788876 47888999999988877653 35689999999999999999999888865432111111111
Q ss_pred CCCceeHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHhHH
Q 046221 112 NPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSV 191 (572)
Q Consensus 112 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 191 (572)
.++ ..=..+.......|..++|..+|.+-++. ..+=+.|-..|.+++|.++-+.--+..+. .||-..
T Consensus 798 ~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~y 864 (1416)
T KOG3617|consen 798 NGE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNY 864 (1416)
T ss_pred CCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHH
Confidence 232 22222333445678888888888877643 33445566778888888876543222222 344444
Q ss_pred HHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCccchHHHHHHhcccCChHHHH
Q 046221 192 LDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGK 271 (572)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 271 (572)
..-+-..++++.|++.|++...+--..+..|. .++.....+.+.+. |...|.---..+-..|+.+.|.
T Consensus 865 A~~Lear~Di~~AleyyEK~~~hafev~rmL~------e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl 932 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGVHAFEVFRMLK------EYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMDAAL 932 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCChHHHHHHHHH------hChHHHHHHHHhcc------chHHHHHHHHHHhcccchHHHH
Confidence 55555677888888888876443222111111 11122222222221 2233333334445567777777
Q ss_pred HHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHHHHcCChHHHHHHHHHHH
Q 046221 272 QLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344 (572)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 344 (572)
.+|..... |-++++..|-.|+.++|-++-++- .|......+.+.|-..|++.+|..+|.+..
T Consensus 933 ~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 933 SFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 77665543 234555556667777666665542 233455556666666677777776666654
No 93
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.93 E-value=1.6e-07 Score=84.38 Aligned_cols=247 Identities=13% Similarity=0.049 Sum_probs=161.4
Q ss_pred HHHHhcCChhHHHHHHhccCCCC----cchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccH
Q 046221 294 AMYSKCGDLDSSRSVFNQITEKS----LVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAAL 369 (572)
Q Consensus 294 ~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 369 (572)
+-+.-.|++..++.-.+ ....+ ......+.+++...|+++.++ .++. .+..|.......+...+....+.
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~--~~~~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIK--KSSSPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS---TTSSCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhc--cCCChhHHHHHHHHHHHhCccch
Confidence 44555688888876554 22221 234455677888888877544 4443 33377777776676666655555
Q ss_pred HHHHHHHHHHHHhcCC-CchhHHHHHHHHhhhcCChHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 046221 370 EICLQLHGIAFEAGFP-RYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTE 448 (572)
Q Consensus 370 ~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 448 (572)
+.+..-++........ .+....-.....+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~---~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG---GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT---TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc---CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555555443333323 23333334445677889999999988765 4556667788999999999999999999998
Q ss_pred cCCCCCHHHHHHHHHHH----hccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC--CCC
Q 046221 449 TGEVPDSSTYLSILNAC----GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE--GMG 522 (572)
Q Consensus 449 ~g~~p~~~~~~~l~~~~----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~ 522 (572)
+..|. +...+..++ ...+.+.+|..+|+++.+. .++++.+.+.+..+....|++++|.+++.+... +-+
T Consensus 160 --~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~ 234 (290)
T PF04733_consen 160 --IDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND 234 (290)
T ss_dssp --CSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH
T ss_pred --cCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC
Confidence 45554 333344443 2334799999999998543 568888999999999999999999999999887 445
Q ss_pred hHHHHHHHHHHhhhcCCH-HHHHHHHHHHHhCCC
Q 046221 523 PNIWRALLSGCVLHVGRF-QDAEALRSGSQKKGI 555 (572)
Q Consensus 523 ~~~~~~l~~~~~~~~g~~-~~A~~~~~~m~~~~~ 555 (572)
+.+...++...... |+. +.+.+.+.++.+..+
T Consensus 235 ~d~LaNliv~~~~~-gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 235 PDTLANLIVCSLHL-GKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp HHHHHHHHHHHHHT-T-TCHHHHHHHHHCHHHTT
T ss_pred HHHHHHHHHHHHHh-CCChhHHHHHHHHHHHhCC
Confidence 55666665554444 777 667788888776543
No 94
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.92 E-value=2.3e-07 Score=84.80 Aligned_cols=94 Identities=10% Similarity=-0.064 Sum_probs=44.3
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCcccCCCCCCceeH
Q 046221 39 WSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSC 118 (572)
Q Consensus 39 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (572)
|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++|...++..++..+ .+..+|
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P----------~~~~a~ 135 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDP----------TYNYAY 135 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----------CCHHHH
Confidence 4444444445555555555555544432 22334444444455555555555555555544433 122344
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHh
Q 046221 119 NAIVAGFINNKLFQQAVLLFNFFRG 143 (572)
Q Consensus 119 ~~l~~~~~~~~~~~~a~~~~~~m~~ 143 (572)
..+...+...|++++|.+.|+...+
T Consensus 136 ~~lg~~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 136 LNRGIALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4444444455555555555555444
No 95
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.92 E-value=1e-05 Score=80.55 Aligned_cols=395 Identities=11% Similarity=0.015 Sum_probs=201.4
Q ss_pred CCcchhhHHHHHhhcCChhhHHHHhccCCCCC-----hhhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHH
Q 046221 4 DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKN-----VVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVL 78 (572)
Q Consensus 4 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 78 (572)
|...+..+.+.|.+..+++.|..+.-...+.. ...|-...-.|...++...|+.-|+...+.. +-|...|..+.
T Consensus 525 daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLG 603 (1238)
T KOG1127|consen 525 DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLG 603 (1238)
T ss_pred hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHH
Confidence 45566778889999999999998854433321 2234444445677788888888888877654 45666788888
Q ss_pred HHHcCCCChHHHHHHHHHHHHhcCCCCcccCCCCCCceeHHH--HHHHHHhCCChHHHHHHHHHHHhC------CCCCCH
Q 046221 79 VAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNA--IVAGFINNKLFQQAVLLFNFFRGS------GLVPNA 150 (572)
Q Consensus 79 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~m~~~------~~~p~~ 150 (572)
.+|.+.|++..|.++|.+.....+. ..|.. ....-+..|.+.+|+..+...... +..--.
T Consensus 604 eAY~~sGry~~AlKvF~kAs~LrP~------------s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLa 671 (1238)
T KOG1127|consen 604 EAYPESGRYSHALKVFTKASLLRPL------------SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLA 671 (1238)
T ss_pred HHHHhcCceehHHHhhhhhHhcCcH------------hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 8888888888888888877766542 12222 222344568888888777766542 111122
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHH-------HHHhcCCCChhHHhHHHHHH-----------------------HhCCC
Q 046221 151 VTMLTVIRGCVALGSRALCELIHGL-------TIKLGLILDVSVNNSVLDMY-----------------------SCLMD 200 (572)
Q Consensus 151 ~~~~~ll~~~~~~~~~~~a~~~~~~-------~~~~~~~~~~~~~~~l~~~~-----------------------~~~~~ 200 (572)
.++..+...+...|-...+..+++. ...+....+...|-.+.+++ -+.+.
T Consensus 672 E~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~ 751 (1238)
T KOG1127|consen 672 ESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGA 751 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhccc
Confidence 2333333333333322223222222 22222111222222111111 11111
Q ss_pred H---H---HHHHHHhhcCC--CCcccHHHHHHHHHc--------cCCHHHHHHHHHHHHhCCCCCCccchHHHHHHhccc
Q 046221 201 L---D---AAIQIFREMEC--KDVISWTRMMGLFVD--------FEYAGDALKIFREMRKSRIICDTVALLNLISVNAIL 264 (572)
Q Consensus 201 ~---~---~a~~~~~~~~~--~~~~~~~~li~~~~~--------~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 264 (572)
. | -+.+.+-.-.. .+..+|..++..|.+ ..+...|...+....+. ..+...+-..+......
T Consensus 752 l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVlsg~ 829 (1238)
T KOG1127|consen 752 LKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNALGVLSGI 829 (1238)
T ss_pred CcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHHHhhcc
Confidence 1 0 00000000000 133445555444433 12223456666655543 23444444444445555
Q ss_pred CChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHHHHHHhccCCC---CcchHHHHHHHHHHcCChHHHHHHHH
Q 046221 265 GDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK---SLVSWTAIISGYVQNGCAREALNQFI 341 (572)
Q Consensus 265 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~ 341 (572)
|++.-+..-|-.-.... +....+|..+.-.+.+..+++.|...|.....- +...|--........|+.-+...+|.
T Consensus 830 gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfa 908 (1238)
T KOG1127|consen 830 GNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFA 908 (1238)
T ss_pred chhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 66666655554443332 445556667777777888888888888877653 33455444444445666666666665
Q ss_pred HH---HhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHH---------hcCCCchhHHHHHHHHhhhcCChHHHHH
Q 046221 342 KM---RQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFE---------AGFPRYRSVQNCLISSYSKCGNVDLAYI 409 (572)
Q Consensus 342 ~~---~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 409 (572)
.- ....|.-++...+..........|+.+.-....+.+.. .+.+.....|.+.....-+.+.++.|..
T Consensus 909 Hs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~e 988 (1238)
T KOG1127|consen 909 HSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALE 988 (1238)
T ss_pred hhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHH
Confidence 51 11233444444444444444444444433322222211 1334455556655555556666666655
Q ss_pred HHHHc
Q 046221 410 VFEEM 414 (572)
Q Consensus 410 ~~~~~ 414 (572)
...+.
T Consensus 989 la~Rl 993 (1238)
T KOG1127|consen 989 LATRL 993 (1238)
T ss_pred HHHHH
Confidence 55444
No 96
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=0.00013 Score=73.12 Aligned_cols=270 Identities=14% Similarity=0.088 Sum_probs=159.4
Q ss_pred HHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHHHHHHhCCCH
Q 046221 122 VAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDL 201 (572)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (572)
......++-+++|+.+|+..- .+......++.- .++++.|.+.-+.. ..+.+|+.+..+-.+.|.+
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCch
Confidence 334445555666666666542 233333333332 23444444433322 2345666677776777777
Q ss_pred HHHHHHHhhcCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCccchHHHHHHhcccCChHHHHHHHHHHHHhC
Q 046221 202 DAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281 (572)
Q Consensus 202 ~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 281 (572)
.+|++-|-+. .|+..|..+++...+.|.+++-.+++...++....|... +.++-+|++.+++.+.+.++.
T Consensus 1121 ~dAieSyika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~------ 1190 (1666)
T KOG0985|consen 1121 KDAIESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA------ 1190 (1666)
T ss_pred HHHHHHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc------
Confidence 7776655443 455567777777777777777777766666554444433 356666776666665554432
Q ss_pred CCCCcchHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHH
Q 046221 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILT 361 (572)
Q Consensus 282 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~ 361 (572)
-|+......+.+-|...|.++.|.-+|. ++..|..|...+...|+++.|.+.-++.. +..||.-+-.
T Consensus 1191 -gpN~A~i~~vGdrcf~~~~y~aAkl~y~-----~vSN~a~La~TLV~LgeyQ~AVD~aRKAn-------s~ktWK~Vcf 1257 (1666)
T KOG0985|consen 1191 -GPNVANIQQVGDRCFEEKMYEAAKLLYS-----NVSNFAKLASTLVYLGEYQGAVDAARKAN-------STKTWKEVCF 1257 (1666)
T ss_pred -CCCchhHHHHhHHHhhhhhhHHHHHHHH-----HhhhHHHHHHHHHHHHHHHHHHHHhhhcc-------chhHHHHHHH
Confidence 4555555666666777777777766665 34567778888888888888877666553 5567777777
Q ss_pred HhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc-CCCC-CHhHHHHHHHHHHhc
Q 046221 362 ASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFLR-DVVSWNTIIYGYGVN 433 (572)
Q Consensus 362 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~ 433 (572)
+|...+.+..|. +...++.....-..-++..|-..|-+++-+.+++.. |... ..-.|+-|.-.|.+-
T Consensus 1258 aCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1258 ACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred HHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 777666554332 111222233344456777788888888888887766 4432 334455555555543
No 97
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=1.1e-05 Score=75.02 Aligned_cols=418 Identities=14% Similarity=0.030 Sum_probs=238.8
Q ss_pred HHHcCCCChHHHHHHHHHHHHhcCCCCcccCCCCCCceeHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCC-HhhHHHHH
Q 046221 79 VAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPN-AVTMLTVI 157 (572)
Q Consensus 79 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll 157 (572)
.+.+..|+++.|...|-+.+...+ +|.+.|..-..+|...|++++|++=-.+-++ +.|+ ..-|+-.-
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p----------~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~G 77 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSP----------TNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKG 77 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCC----------CccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhH
Confidence 355678999999999988888776 6788899999999999999999876666655 4555 34678888
Q ss_pred HHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHHHHHHhCCCHHHHHHHHhh------cCC-C------CcccHHHHHH
Q 046221 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFRE------MEC-K------DVISWTRMMG 224 (572)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~------~~~-~------~~~~~~~li~ 224 (572)
.++.-.|++++|...|.+-++.. +.+...++.+..++... ..+.+.|.. +.. | ....|..++.
T Consensus 78 aa~~~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~---~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~ 153 (539)
T KOG0548|consen 78 AALFGLGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLED---YAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILE 153 (539)
T ss_pred HHHHhcccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHH---HHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHH
Confidence 88888899999999998887764 55566777777766111 111111111 000 0 1112333332
Q ss_pred HHHcc-------CCHHHHHHHHHHHHh--------CCCCCCccchH---HHHHHhcccCChHHHHHHHHHHHHhCCCCCc
Q 046221 225 LFVDF-------EYAGDALKIFREMRK--------SRIICDTVALL---NLISVNAILGDLKRGKQLHAQVVLGGLQSEL 286 (572)
Q Consensus 225 ~~~~~-------~~~~~a~~~~~~m~~--------~~~~p~~~~~~---~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 286 (572)
.+-++ .+.+......-.+.. .+..+....-. .-.......++..+-.+. ..-.
T Consensus 154 ~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~---------k~~a 224 (539)
T KOG0548|consen 154 IIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRV---------KEKA 224 (539)
T ss_pred HhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHH---------HHhh
Confidence 22211 001111111111100 00000000000 000000000000000000 0001
Q ss_pred chHHHHHHHHHhcCChhHHHHHHhccCCC--CcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC--C----HhHHHH
Q 046221 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEK--SLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV--D----SITLVS 358 (572)
Q Consensus 287 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~----~~~~~~ 358 (572)
.-...+.++..+..+++.|.+-+....+- ++.-++....+|...|.+.+......... +.|... + ...+..
T Consensus 225 ~~ek~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~-E~gre~rad~klIak~~~r 303 (539)
T KOG0548|consen 225 HKEKELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAV-EVGRELRADYKLIAKALAR 303 (539)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHH-HHhHHHHHHHHHHHHHHHH
Confidence 12244566666677777777777665543 23334555566777776666665555544 222111 0 112222
Q ss_pred HHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc-CCCCCH-hHHHHHHHHHHhcCCh
Q 046221 359 ILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFLRDV-VSWNTIIYGYGVNGHG 436 (572)
Q Consensus 359 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~-~~~~~l~~~~~~~~~~ 436 (572)
+..++.+.++++.+...+.+.......|+. ..+....+++.+..+.. -+.|.. .....-...+.+.|++
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCH
Confidence 334566667788888888776554433332 23344455555555554 333432 1122235668889999
Q ss_pred HHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHH
Q 046221 437 ETALALYHKMTETGEVP-DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAG 515 (572)
Q Consensus 437 ~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 515 (572)
..|+..|.+++.. .| |...|....-+|.+.|.+..|+.-.+..++.+ ++....|.--..++.-..++++|.+.|+
T Consensus 375 ~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~--p~~~kgy~RKg~al~~mk~ydkAleay~ 450 (539)
T KOG0548|consen 375 PEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELD--PNFIKAYLRKGAALRAMKEYDKALEAYQ 450 (539)
T ss_pred HHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999986 46 55889999999999999999999988887653 3334455555667777788999999999
Q ss_pred hccC-CCChHHHHHHHHHHhh
Q 046221 516 KLLE-GMGPNIWRALLSGCVL 535 (572)
Q Consensus 516 ~~~~-~~~~~~~~~l~~~~~~ 535 (572)
+..+ +|+..-+..-+.-|..
T Consensus 451 eale~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 451 EALELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHhcCchhHHHHHHHHHHHH
Confidence 9887 6665555555555544
No 98
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=5.8e-06 Score=70.75 Aligned_cols=300 Identities=10% Similarity=0.034 Sum_probs=165.1
Q ss_pred hhhHHHHHhhcCChhhHHHHhccCCCC---ChhhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHH-HHHHcC
Q 046221 8 SSKLLSNYFKSGKIKEAENLFDEIPEK---NVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGV-LVAAAG 83 (572)
Q Consensus 8 ~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-l~~~~~ 83 (572)
+.+.+..+.+..++++|++++..-.+. +....+.+...|-...++..|-+.|+++-.. .|...-|... ..++.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 456777788999999999999877663 4556777778888999999999999998765 5665555432 355667
Q ss_pred CCChHHHHHHHHHHHHhcCCCCcccCCCCCCceeHHHHH----HHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 046221 84 LQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIV----AGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159 (572)
Q Consensus 84 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 159 (572)
.+.+..|.++...|... + ...+..+ ......+++..+..++++....| +..+.+
T Consensus 91 A~i~ADALrV~~~~~D~------------~--~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~i----- 148 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN------------P--ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQI----- 148 (459)
T ss_pred hcccHHHHHHHHHhcCC------------H--HHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhc-----
Confidence 78888888887766432 1 1112111 12234566666666666554221 222222
Q ss_pred HhccCChHHHHHHHHHHHHhcCCCChhHHhHHHHHHHhCCCHHHHHHHHhhcCC----CCcccHHHHHHHHHccCCHHHH
Q 046221 160 CVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC----KDVISWTRMMGLFVDFEYAGDA 235 (572)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a 235 (572)
.......+.|+.+.|.+-|+...+ .....||..+ +..+.++++.|
T Consensus 149 ------------------------------n~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasA 197 (459)
T KOG4340|consen 149 ------------------------------NLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASA 197 (459)
T ss_pred ------------------------------cchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHH
Confidence 222223344455555555544433 1233444333 34456777888
Q ss_pred HHHHHHHHhCCCCCCccch-H---HHHHHhcccCCh-HHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHHHHHHh
Q 046221 236 LKIFREMRKSRIICDTVAL-L---NLISVNAILGDL-KRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFN 310 (572)
Q Consensus 236 ~~~~~~m~~~~~~p~~~~~-~---~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 310 (572)
++...++.++|++-.+..- . ..+.+- ..|+. ..+..-+ ...+|.-...+.+.|+++.|.+.+.
T Consensus 198 Lk~iSEIieRG~r~HPElgIGm~tegiDvr-svgNt~~lh~Sal-----------~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 198 LKHISEIIERGIRQHPELGIGMTTEGIDVR-SVGNTLVLHQSAL-----------VEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred HHHHHHHHHhhhhcCCccCccceeccCchh-cccchHHHHHHHH-----------HHHhhhhhhhhhhcccHHHHHHHhh
Confidence 8888888877754322210 0 000000 00110 0000000 1122333445667888899988888
Q ss_pred ccCCC-----CcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHH
Q 046221 311 QITEK-----SLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHG 377 (572)
Q Consensus 311 ~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 377 (572)
.|+.+ |++|...+.-.- ..+++.+..+-+.-+.+..+ -...||..++-.||+..-++.|-.++.
T Consensus 266 DmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP--fP~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 266 DMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP--FPPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred cCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC--CChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 88753 455544332211 23444444444444442322 234566667777777776666666654
No 99
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.80 E-value=1.7e-05 Score=75.61 Aligned_cols=192 Identities=9% Similarity=-0.006 Sum_probs=95.9
Q ss_pred hHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchH--H-HHHHHHcCCCChHHHHHHHHHHHHhcCCCCcccCCCCCC
Q 046221 38 SWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTM--V-GVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPY 114 (572)
Q Consensus 38 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~--~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 114 (572)
.|..+...+...|+.+.+...+....+.. +++.... . .....+...|++++|..+++...+..+ .+
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P----------~~ 76 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQAL-AARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP----------RD 76 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC----------Cc
Confidence 34444445555556666555555544321 1121111 1 111223355666666666666665543 11
Q ss_pred ceeHHHHHHHHH----hCCChHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHh
Q 046221 115 LVSCNAIVAGFI----NNKLFQQAVLLFNFFRGSGLVPNA-VTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNN 189 (572)
Q Consensus 115 ~~~~~~l~~~~~----~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 189 (572)
...+.. ...+. ..+....+.+.+.. .....|+. .....+...+...|++++|...+++.++.. +.+...+.
T Consensus 77 ~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~ 152 (355)
T cd05804 77 LLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVH 152 (355)
T ss_pred HHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHH
Confidence 222221 11111 12333444444433 11122222 222334445566677777777777776654 44455566
Q ss_pred HHHHHHHhCCCHHHHHHHHhhcCC--C---Cc--ccHHHHHHHHHccCCHHHHHHHHHHHHh
Q 046221 190 SVLDMYSCLMDLDAAIQIFREMEC--K---DV--ISWTRMMGLFVDFEYAGDALKIFREMRK 244 (572)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~~~~~--~---~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~ 244 (572)
.+...+...|++++|...+++... + +. ..|..+...+...|++++|..++++...
T Consensus 153 ~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 153 AVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 666677777777777777766554 1 11 1234566667777777777777777643
No 100
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.77 E-value=3e-05 Score=73.91 Aligned_cols=194 Identities=14% Similarity=0.038 Sum_probs=90.9
Q ss_pred ccHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCCccchHH-HHHHhcccCChHHHHHHHHHHHHhCCCCCcchHHH---
Q 046221 217 ISWTRMMGLFVDFEYAGDALKIFREMRKSRI-ICDTVALLN-LISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNS--- 291 (572)
Q Consensus 217 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--- 291 (572)
..|..+...+...|+.+.+...+....+... .++...... ....+...|+++.|...++...+.. +.+...+..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~ 85 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHH
Confidence 4455666666666777776666665544321 112111111 1223355677777777777766553 222222221
Q ss_pred HHHHHHhcCChhHHHHHHhccCCCCc---chHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhccccc
Q 046221 292 IIAMYSKCGDLDSSRSVFNQITEKSL---VSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAA 368 (572)
Q Consensus 292 l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 368 (572)
+.......+..+.+.+.+......+. .....+...+...|++++|...+++..
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al------------------------ 141 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRAL------------------------ 141 (355)
T ss_pred HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------------
Confidence 11111122333444444433221111 122223334455555555555555554
Q ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc-CCC---CCH--hHHHHHHHHHHhcCChHHHHHH
Q 046221 369 LEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFL---RDV--VSWNTIIYGYGVNGHGETALAL 442 (572)
Q Consensus 369 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~---~~~--~~~~~l~~~~~~~~~~~~A~~~ 442 (572)
+.. +.+...+..+..++...|++++|...+++. ... |+. ..|..+...+...|++++|..+
T Consensus 142 ------------~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 208 (355)
T cd05804 142 ------------ELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI 208 (355)
T ss_pred ------------hhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 332 223344455555566666666666666655 111 221 2233455556666666666666
Q ss_pred HHHHHh
Q 046221 443 YHKMTE 448 (572)
Q Consensus 443 ~~~~~~ 448 (572)
+++...
T Consensus 209 ~~~~~~ 214 (355)
T cd05804 209 YDTHIA 214 (355)
T ss_pred HHHHhc
Confidence 666543
No 101
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.72 E-value=1.2e-06 Score=81.88 Aligned_cols=242 Identities=12% Similarity=0.120 Sum_probs=152.8
Q ss_pred HHHhcCChhHHHHHHhccCCCCc---chHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHH
Q 046221 295 MYSKCGDLDSSRSVFNQITEKSL---VSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEI 371 (572)
Q Consensus 295 ~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 371 (572)
-+.+.|++.+|.-.|+...+.|+ ..|..|.......++-..|+..+++.. .-.+.+...+..|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl--~LdP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCL--ELDPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHH--hcCCccHHHHHHHHHHHhhhhhHHH
Confidence 34566777777777776665433 466667777777777777777777764 2334456666777777777777777
Q ss_pred HHHHHHHHHHhcCCC--------chhHHHHHHHHhhhcCChHHHHHHHHHc----CCCCCHhHHHHHHHHHHhcCChHHH
Q 046221 372 CLQLHGIAFEAGFPR--------YRSVQNCLISSYSKCGNVDLAYIVFEEM----GFLRDVVSWNTIIYGYGVNGHGETA 439 (572)
Q Consensus 372 a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A 439 (572)
|...++..+....+- +...-.. ..+.....+....++|-++ +..+|+.....|.-.|--.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 777776665443110 0000000 1112222344445555555 4446777777777777788888888
Q ss_pred HHHHHHHHhcCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhhCChhHHHHHHHhc
Q 046221 440 LALYHKMTETGEVPD-SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQ-EHYGCVVDLLARAGCLSDASGLAGKL 517 (572)
Q Consensus 440 ~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 517 (572)
+..|+..+. ++|+ ...|+-|...++...+.++|+..|.++++ ++|.- .....|.-.|...|.+++|...|=.+
T Consensus 450 iDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq---LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 450 VDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ---LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh---cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 888888887 5674 47788888888888888888888888764 45553 36667777788888888887776654
Q ss_pred cC------------CCChHHHHHHHHHHhhhcCCHHHHHHH
Q 046221 518 LE------------GMGPNIWRALLSGCVLHVGRFQDAEAL 546 (572)
Q Consensus 518 ~~------------~~~~~~~~~l~~~~~~~~g~~~~A~~~ 546 (572)
.. .++...|..|-.++... ++.|-+.+.
T Consensus 525 L~mq~ks~~~~~~~~~se~iw~tLR~als~~-~~~D~l~~a 564 (579)
T KOG1125|consen 525 LSMQRKSRNHNKAPMASENIWQTLRLALSAM-NRSDLLQEA 564 (579)
T ss_pred HHhhhcccccccCCcchHHHHHHHHHHHHHc-CCchHHHHh
Confidence 33 12235677777665555 666645443
No 102
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.71 E-value=7.5e-05 Score=80.95 Aligned_cols=326 Identities=10% Similarity=-0.045 Sum_probs=170.2
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCccchHHHHHHhcccCChHHHHHHHHHHHHhCCC------CC--cchHHHHHHHHH
Q 046221 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQ------SE--LRLSNSIIAMYS 297 (572)
Q Consensus 226 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~~--~~~~~~l~~~~~ 297 (572)
....|+++.+...+..+.......+..........+...|+++++...+......--. +. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 4445666666666555422111112222223333445667777777777766543111 11 111122334455
Q ss_pred hcCChhHHHHHHhccCC----CCc----chHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--C--CHhHHHHHHHHhcc
Q 046221 298 KCGDLDSSRSVFNQITE----KSL----VSWTAIISGYVQNGCAREALNQFIKMRQEKTDS--V--DSITLVSILTASGE 365 (572)
Q Consensus 298 ~~~~~~~a~~~~~~~~~----~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~--~~~~~~~ll~~~~~ 365 (572)
..|++++|...+++... .+. ...+.+...+...|++++|...+++........ + ...+...+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 67788887777766432 111 233445555667788888887777765221111 1 11233444556667
Q ss_pred cccHHHHHHHHHHHHHh----cCCC---chhHHHHHHHHhhhcCChHHHHHHHHHc-----CCCCC--HhHHHHHHHHHH
Q 046221 366 LAALEICLQLHGIAFEA----GFPR---YRSVQNCLISSYSKCGNVDLAYIVFEEM-----GFLRD--VVSWNTIIYGYG 431 (572)
Q Consensus 366 ~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~--~~~~~~l~~~~~ 431 (572)
.|+++.|...++..... +... ....+..+...+...|++++|...+.+. ...+. ...+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 78888887777665442 2111 1223344555666678888887777765 11121 233444555667
Q ss_pred hcCChHHHHHHHHHHHhcC--CCC--CHHHH--HHHHHHHhccCChHHHHHHHHHhHHhcCCCCChh----HHHHHHHHH
Q 046221 432 VNGHGETALALYHKMTETG--EVP--DSSTY--LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQE----HYGCVVDLL 501 (572)
Q Consensus 432 ~~~~~~~A~~~~~~~~~~g--~~p--~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~ 501 (572)
..|+++.|...+++..... ... ..... ...+..+...|+.+.|..++..... . ...... .+..+..++
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~-~-~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPK-P-EFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCC-C-CCccchhHHHHHHHHHHHH
Confidence 7788888887777765421 011 00000 1112334456777777777765532 1 111111 134556677
Q ss_pred HhhCChhHHHHHHHhccC-----CCC---hHHHHHHHHHHhhhcCCHHHHHHHHHHHHhCC
Q 046221 502 ARAGCLSDASGLAGKLLE-----GMG---PNIWRALLSGCVLHVGRFQDAEALRSGSQKKG 554 (572)
Q Consensus 502 ~~~g~~~~A~~~~~~~~~-----~~~---~~~~~~l~~~~~~~~g~~~~A~~~~~~m~~~~ 554 (572)
...|++++|...++++.. ... ..+...+...+... |+.++|...+.+..+..
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~-G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQ-GRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHh
Confidence 777888888887777654 111 11233333344444 88888887777776544
No 103
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.70 E-value=8.7e-06 Score=78.43 Aligned_cols=231 Identities=13% Similarity=0.090 Sum_probs=181.3
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHH
Q 046221 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTA 362 (572)
Q Consensus 283 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~ 362 (572)
+|-...-..+...+...|-...|..+|+++ ..|..++.+|+..|+..+|..+..+-. + .+||+..|..+...
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~l-e--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQEL-E--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHh-c--CCCcchhHHHhhhh
Confidence 444445567888899999999999999976 478889999999999999999888875 3 78899999999999
Q ss_pred hcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc-CCC-CCHhHHHHHHHHHHhcCChHHHH
Q 046221 363 SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFL-RDVVSWNTIIYGYGVNGHGETAL 440 (572)
Q Consensus 363 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~A~ 440 (572)
..+..-+++|.++.+..... .-..+.....+.++++++.+.|+.- .+. .-..+|-.+..+..+.++++.|.
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 99888999999998765433 1122333344578999999999876 332 34567877878888899999999
Q ss_pred HHHHHHHhcCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC
Q 046221 441 ALYHKMTETGEVPDS-STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 441 ~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
+.|..... ..||. ..|+.+-.+|.+.|+-.+|...++++++-+ .-+..+|...+-...+.|.+++|.+.+.++..
T Consensus 540 ~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn--~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 540 KAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN--YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC--CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 99999888 68876 889999999999999999999999998554 34455777778888899999999999998876
Q ss_pred ----CCChHHHHHHHHH
Q 046221 520 ----GMGPNIWRALLSG 532 (572)
Q Consensus 520 ----~~~~~~~~~l~~~ 532 (572)
..|+.+...++..
T Consensus 616 ~~~~~~d~~vl~~iv~~ 632 (777)
T KOG1128|consen 616 LRKKYKDDEVLLIIVRT 632 (777)
T ss_pred hhhhcccchhhHHHHHH
Confidence 3344444444433
No 104
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.66 E-value=4.7e-05 Score=66.73 Aligned_cols=306 Identities=10% Similarity=0.038 Sum_probs=198.0
Q ss_pred HHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHH---HHHHccCCHHHHHHHHHHHHhCCCCCCccchH-HHHHHhcccC
Q 046221 190 SVLDMYSCLMDLDAAIQIFREMECKDVISWTRMM---GLFVDFEYAGDALKIFREMRKSRIICDTVALL-NLISVNAILG 265 (572)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~ll~~~~~~~ 265 (572)
-+...+...|++..|+.-|....+.|+..|.++. ..|...|+...|+.-+.+..+. +||-..-. .--..+.+.|
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcc
Confidence 4566667777888888888777776666666554 3566677777777666666653 45532211 1112345556
Q ss_pred ChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHh
Q 046221 266 DLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQ 345 (572)
Q Consensus 266 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 345 (572)
.++.|..-|+.++++..... ....++.+.-..++-+. ....+..+.-.|+...|+.....+.
T Consensus 121 ele~A~~DF~~vl~~~~s~~-----~~~eaqskl~~~~e~~~------------l~~ql~s~~~~GD~~~ai~~i~~ll- 182 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNG-----LVLEAQSKLALIQEHWV------------LVQQLKSASGSGDCQNAIEMITHLL- 182 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcc-----hhHHHHHHHHhHHHHHH------------HHHHHHHHhcCCchhhHHHHHHHHH-
Confidence 66666666666655432111 11122222211111111 1223445566788999999988885
Q ss_pred cCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc-CCCCCHhH--
Q 046221 346 EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFLRDVVS-- 422 (572)
Q Consensus 346 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~-- 422 (572)
.-.+.|...+..-..+|...|++..|+.=++...+.. ..+...+--+-..+...|+.+.++..+++. .+.||...
T Consensus 183 -Ei~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf 260 (504)
T KOG0624|consen 183 -EIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCF 260 (504)
T ss_pred -hcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHH
Confidence 3456677788888888899999999988877776655 334444555777888899999998888887 66676432
Q ss_pred --HHHH---H------HHHHhcCChHHHHHHHHHHHhcCCCCCH-----HHHHHHHHHHhccCChHHHHHHHHHhHHhcC
Q 046221 423 --WNTI---I------YGYGVNGHGETALALYHKMTETGEVPDS-----STYLSILNACGHAGLTNDGLVIFNQMIEENK 486 (572)
Q Consensus 423 --~~~l---~------~~~~~~~~~~~A~~~~~~~~~~g~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 486 (572)
|..| . ......+++.++++..+...+. .|.. ..+..+-.++...|++.+|++...++++
T Consensus 261 ~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--- 335 (504)
T KOG0624|consen 261 PFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--- 335 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh---
Confidence 3222 1 2234567778888888877774 4542 3345566677888899999999988874
Q ss_pred CCCC-hhHHHHHHHHHHhhCChhHHHHHHHhccC-CCC
Q 046221 487 VKPS-QEHYGCVVDLLARAGCLSDASGLAGKLLE-GMG 522 (572)
Q Consensus 487 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~ 522 (572)
+.|| +.++.--.++|.-...++.|+.-|+++.+ .++
T Consensus 336 ~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 336 IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 3455 67888888899888899999999999887 443
No 105
>PF12854 PPR_1: PPR repeat
Probab=98.66 E-value=3.9e-08 Score=55.63 Aligned_cols=32 Identities=34% Similarity=0.480 Sum_probs=21.9
Q ss_pred cCCCChhHHhHHHHHHHhCCCHHHHHHHHhhc
Q 046221 180 GLILDVSVNNSVLDMYSCLMDLDAAIQIFREM 211 (572)
Q Consensus 180 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (572)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56666666666677777777777777766666
No 106
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.66 E-value=5e-06 Score=77.91 Aligned_cols=248 Identities=15% Similarity=0.102 Sum_probs=180.7
Q ss_pred hcccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHHHHHHhccCCC---CcchHHHHHHHHHHcCChHHHH
Q 046221 261 NAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK---SLVSWTAIISGYVQNGCAREAL 337 (572)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~ 337 (572)
+.+.|++.+|.-.|+..++.+ +.+...|..|.......++-..|+..+.+..+- +....-.|.-.|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 356788888888888888776 556778888888888888888888888887754 4456677777888889889999
Q ss_pred HHHHHHHhcCC-----CC--CCHhHHHHHHHHhcccccHHHHHHHH-HHHHHhcCCCchhHHHHHHHHhhhcCChHHHHH
Q 046221 338 NQFIKMRQEKT-----DS--VDSITLVSILTASGELAALEICLQLH-GIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYI 409 (572)
Q Consensus 338 ~~~~~~~~~~~-----~~--~~~~~~~~ll~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 409 (572)
+.++.-..... .. ++..+-.. ........+....++| +.....+..+|+.+...|.-.|--.|++++|..
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 99887752220 00 00000000 1222333344455554 555556666899999999999999999999999
Q ss_pred HHHHc-CCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHhHHhcC
Q 046221 410 VFEEM-GFLR-DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS-STYLSILNACGHAGLTNDGLVIFNQMIEENK 486 (572)
Q Consensus 410 ~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 486 (572)
.|+.. .+.| |...||.|...++...+.++|+..|.+.++ ++|+. .....|.-+|...|.+++|.+.|-.++....
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 99998 6656 578899999999999999999999999999 79987 6667778889999999999998887664321
Q ss_pred --------CCCChhHHHHHHHHHHhhCChhHHHHH
Q 046221 487 --------VKPSQEHYGCVVDLLARAGCLSDASGL 513 (572)
Q Consensus 487 --------~~~~~~~~~~l~~~~~~~g~~~~A~~~ 513 (572)
-.++..+|..|=.++.-.++.+-+.+.
T Consensus 530 ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 530 KSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred cccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 112345777776666666666654443
No 107
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.65 E-value=2.4e-06 Score=75.86 Aligned_cols=160 Identities=14% Similarity=0.064 Sum_probs=98.0
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHHc-CCCCC----HhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH----HHHH
Q 046221 389 SVQNCLISSYSKCGNVDLAYIVFEEM-GFLRD----VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS----STYL 459 (572)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~----~~~~ 459 (572)
..+-.+...+...|++++|...++++ ...|+ ...+..+..++...|++++|...++++.+. .|+. .++.
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~ 111 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYAYY 111 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHHHH
Confidence 33444555566666666666666665 22222 134455566666666666666666666653 3322 1344
Q ss_pred HHHHHHhcc--------CChHHHHHHHHHhHHhcCCCCChh-H-----------------HHHHHHHHHhhCChhHHHHH
Q 046221 460 SILNACGHA--------GLTNDGLVIFNQMIEENKVKPSQE-H-----------------YGCVVDLLARAGCLSDASGL 513 (572)
Q Consensus 460 ~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~-~-----------------~~~l~~~~~~~g~~~~A~~~ 513 (572)
.+..++... |++++|.+.++.+++.. |+.. . ...+...+.+.|++++|...
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~ 188 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY---PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINR 188 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC---CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 444444433 56666677776665443 2221 1 12455678888999999999
Q ss_pred HHhccC-CCC----hHHHHHHHHHHhhhcCCHHHHHHHHHHHHhCC
Q 046221 514 AGKLLE-GMG----PNIWRALLSGCVLHVGRFQDAEALRSGSQKKG 554 (572)
Q Consensus 514 ~~~~~~-~~~----~~~~~~l~~~~~~~~g~~~~A~~~~~~m~~~~ 554 (572)
++++.. .|+ +..+..+...+... |++++|...++.+..+.
T Consensus 189 ~~~al~~~p~~~~~~~a~~~l~~~~~~l-g~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 189 FETVVENYPDTPATEEALARLVEAYLKL-GLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHCCCCcchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhC
Confidence 999876 332 35677777777766 99999999998887654
No 108
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.64 E-value=5.3e-05 Score=82.10 Aligned_cols=265 Identities=10% Similarity=-0.077 Sum_probs=145.7
Q ss_pred HHHHhhcCChhhHHHHhccCCCCChhh--HHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHcCCCChHH
Q 046221 12 LSNYFKSGKIKEAENLFDEIPEKNVVS--WSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLEL 89 (572)
Q Consensus 12 ~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 89 (572)
...+...|++.+|...+.......... .......+...|++..+...++.+.......+..........+...|++++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~ 427 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE 427 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence 445556666666666665554432111 111223345567787777777665322112223333344445567899999
Q ss_pred HHHHHHHHHHhcCCCCcccCCCCCC--ceeHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCH----hhHHHHHHHHhcc
Q 046221 90 ARSIHGLMVKFGLESDLFEGLKNPY--LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNA----VTMLTVIRGCVAL 163 (572)
Q Consensus 90 a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~ 163 (572)
+..++....+.-...+. ...+. ......+...+...|++++|...+++..+.-...+. ...+.+...+...
T Consensus 428 a~~~l~~a~~~~~~~~~---~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~ 504 (903)
T PRK04841 428 VNTLLARAEQELKDRNI---ELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCK 504 (903)
T ss_pred HHHHHHHHHHhccccCc---ccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHc
Confidence 99998877654211000 00011 112222334556789999999999887653111121 2334445556778
Q ss_pred CChHHHHHHHHHHHHhcCC---C--ChhHHhHHHHHHHhCCCHHHHHHHHhhcCC-------CC----cccHHHHHHHHH
Q 046221 164 GSRALCELIHGLTIKLGLI---L--DVSVNNSVLDMYSCLMDLDAAIQIFREMEC-------KD----VISWTRMMGLFV 227 (572)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~----~~~~~~li~~~~ 227 (572)
|+++.|...+++.....-. + ...++..+...+...|+++.|...+++... ++ ...+..+...+.
T Consensus 505 G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 584 (903)
T PRK04841 505 GELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLW 584 (903)
T ss_pred CCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 8999998888887753211 1 123445556677778888888887766433 11 112334445566
Q ss_pred ccCCHHHHHHHHHHHHhCC--CCCC--ccchHHHHHHhcccCChHHHHHHHHHHHH
Q 046221 228 DFEYAGDALKIFREMRKSR--IICD--TVALLNLISVNAILGDLKRGKQLHAQVVL 279 (572)
Q Consensus 228 ~~~~~~~a~~~~~~m~~~~--~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 279 (572)
..|++++|...+.+..... ..+. ...+..+.......|+.+.|...+.....
T Consensus 585 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 585 EWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred HhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6788888877777764421 1111 12233334455566777777777666644
No 109
>PF12854 PPR_1: PPR repeat
Probab=98.63 E-value=5.5e-08 Score=55.00 Aligned_cols=32 Identities=28% Similarity=0.599 Sum_probs=16.6
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHh
Q 046221 450 GEVPDSSTYLSILNACGHAGLTNDGLVIFNQM 481 (572)
Q Consensus 450 g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 481 (572)
|+.||..||++|+.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555544
No 110
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=2.3e-05 Score=66.18 Aligned_cols=160 Identities=10% Similarity=0.085 Sum_probs=91.6
Q ss_pred CCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHcCCCCCHhHHHHHHHH
Q 046221 350 SVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYG 429 (572)
Q Consensus 350 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~ 429 (572)
..+......-...|.+.++++.|....... -+......=+..+.+..+++-|.+.+++|..--+..+.+-|..+
T Consensus 105 ~sn~i~~l~aa~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~a 178 (299)
T KOG3081|consen 105 GSNLIDLLLAAIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQA 178 (299)
T ss_pred chhHHHHHHhhHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 333333333444556666666666655431 11222222244556666777777777777332455566656665
Q ss_pred HHh----cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhC
Q 046221 430 YGV----NGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAG 505 (572)
Q Consensus 430 ~~~----~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 505 (572)
+.+ .+.+..|.-+|++|.++ ..|+..+.+....++...|++++|..+++.++.+. .-++.+...++.+-...|
T Consensus 179 wv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd--~~dpetL~Nliv~a~~~G 255 (299)
T KOG3081|consen 179 WVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD--AKDPETLANLIVLALHLG 255 (299)
T ss_pred HHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhC
Confidence 543 34567777777777764 56777777777777777777777777777776544 345556666665555556
Q ss_pred ChhHH-HHHHHhcc
Q 046221 506 CLSDA-SGLAGKLL 518 (572)
Q Consensus 506 ~~~~A-~~~~~~~~ 518 (572)
...++ .+.+.++.
T Consensus 256 kd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 256 KDAEVTERNLSQLK 269 (299)
T ss_pred CChHHHHHHHHHHH
Confidence 54333 34444444
No 111
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.56 E-value=0.00045 Score=60.80 Aligned_cols=307 Identities=10% Similarity=0.012 Sum_probs=206.2
Q ss_pred CHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHH---HHH
Q 046221 149 NAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRM---MGL 225 (572)
Q Consensus 149 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l---i~~ 225 (572)
++.-..-+-..+...|.+..|..-|...++.. +.+-.++-.-...|...|+-..|+.-+.++.+..+.-+.+- ...
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchh
Confidence 34444556677778888888888888776532 22222333334567788888888888888876333333333 346
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCccchHHHHHHhcccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHH
Q 046221 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSS 305 (572)
Q Consensus 226 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 305 (572)
+.+.|.+++|..-|+...+.. |+..+- ..+..+.--.++-..+ ...+..+.-.|+...|
T Consensus 116 llK~Gele~A~~DF~~vl~~~--~s~~~~---~eaqskl~~~~e~~~l----------------~~ql~s~~~~GD~~~a 174 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHE--PSNGLV---LEAQSKLALIQEHWVL----------------VQQLKSASGSGDCQNA 174 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcC--CCcchh---HHHHHHHHhHHHHHHH----------------HHHHHHHhcCCchhhH
Confidence 789999999999999998863 433221 2222222222222222 1233345567888888
Q ss_pred HHHHhccCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHh
Q 046221 306 RSVFNQITE---KSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEA 382 (572)
Q Consensus 306 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 382 (572)
+.....+.+ .|...+..-..+|...|++..|+.=++... .-..-+..++..+-..+...|+.+......++..+.
T Consensus 175 i~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~as--kLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl 252 (504)
T KOG0624|consen 175 IEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQAS--KLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL 252 (504)
T ss_pred HHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHH--hccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc
Confidence 888877764 366677778899999999999998887774 333445566667777888899999998888887764
Q ss_pred cCCCchhH----HHHH---HH------HhhhcCChHHHHHHHHHc-CCCCC-----HhHHHHHHHHHHhcCChHHHHHHH
Q 046221 383 GFPRYRSV----QNCL---IS------SYSKCGNVDLAYIVFEEM-GFLRD-----VVSWNTIIYGYGVNGHGETALALY 443 (572)
Q Consensus 383 ~~~~~~~~----~~~l---~~------~~~~~g~~~~A~~~~~~~-~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~ 443 (572)
.|+... |-.+ .. .....+++.++.+..+.. ...|. ...+..+-.++...+++.+|++..
T Consensus 253 --dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC 330 (504)
T KOG0624|consen 253 --DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQC 330 (504)
T ss_pred --CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHH
Confidence 344332 2221 11 123345666666666555 33344 233455667778889999999999
Q ss_pred HHHHhcCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhHH
Q 046221 444 HKMTETGEVPD-SSTYLSILNACGHAGLTNDGLVIFNQMIE 483 (572)
Q Consensus 444 ~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 483 (572)
.+.++ +.|| ..++.--..+|.-...+|.|+.-|+.+.+
T Consensus 331 ~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 331 KEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 99998 6776 68999999999999999999999999965
No 112
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.56 E-value=1.4e-05 Score=82.49 Aligned_cols=196 Identities=13% Similarity=0.111 Sum_probs=126.7
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHh---HHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHH
Q 046221 318 VSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSI---TLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394 (572)
Q Consensus 318 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 394 (572)
..|-..|.-+.+.++.+.|.+++++....-+..-... .|.+++.....-|.-+...++|+++.+.. .....|..|
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~L 1536 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLKL 1536 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHHH
Confidence 5677777777777788888888877752222222222 34444444444455666667777666543 234456667
Q ss_pred HHHhhhcCChHHHHHHHHHc--CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHhccC
Q 046221 395 ISSYSKCGNVDLAYIVFEEM--GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS---STYLSILNACGHAG 469 (572)
Q Consensus 395 ~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~---~~~~~l~~~~~~~g 469 (572)
...|.+.+.+++|.++++.| ........|...+..+.++++-+.|..++.+..+. -|.. ....-.+..-.+.|
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcC
Confidence 77777777777777777777 44345667777777777777777777777777763 4432 33334444556777
Q ss_pred ChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC
Q 046221 470 LTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 470 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
+.+++..+|+..+... |-....|+.+++.-.+.|+.+.++.+|+++..
T Consensus 1615 DaeRGRtlfEgll~ay--PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~ 1662 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAY--PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIE 1662 (1710)
T ss_pred CchhhHHHHHHHHhhC--ccchhHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 7777777777776544 34455677777777777777777777777766
No 113
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.53 E-value=1.1e-05 Score=81.46 Aligned_cols=145 Identities=15% Similarity=0.117 Sum_probs=115.3
Q ss_pred cCCCchhHHHHHHHHhhhcCChHHHHHHHHHc-CCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH-HHHH
Q 046221 383 GFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFLRD-VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS-STYL 459 (572)
Q Consensus 383 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~-~~~~ 459 (572)
..+.+...+..|.....+.|.+++|+.+++.. ...|+ ......+...+.+.+++++|...+++... ..|+. ....
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHH
Confidence 34566778888888889999999999999988 66676 45566778888999999999999999988 46765 6677
Q ss_pred HHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC--CCChHHHHHHHH
Q 046221 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE--GMGPNIWRALLS 531 (572)
Q Consensus 460 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~ 531 (572)
.+..++.+.|++++|..+|++++.. .+-+...+..+..++.+.|+.++|...|++..+ .+....|+.++.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 7778888999999999999999752 234467888899999999999999999999877 455555555443
No 114
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.51 E-value=2.4e-05 Score=79.02 Aligned_cols=134 Identities=10% Similarity=0.079 Sum_probs=114.0
Q ss_pred CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhH
Q 046221 415 GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS-STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEH 493 (572)
Q Consensus 415 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 493 (572)
....+...+-.|.....+.|++++|..+++...+ +.||. .....++..+.+.+++++|...+++.++.. +-+...
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~~~~ 156 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSSARE 156 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCCHHH
Confidence 4545688899999999999999999999999999 68976 677888899999999999999999998543 445557
Q ss_pred HHHHHHHHHhhCChhHHHHHHHhccC-CC-ChHHHHHHHHHHhhhcCCHHHHHHHHHHHHhC
Q 046221 494 YGCVVDLLARAGCLSDASGLAGKLLE-GM-GPNIWRALLSGCVLHVGRFQDAEALRSGSQKK 553 (572)
Q Consensus 494 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~g~~~~A~~~~~~m~~~ 553 (572)
...+..++.+.|++++|.++|+++.. .| +..++..+...+... |+.++|...|++..+.
T Consensus 157 ~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~-G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 157 ILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRR-GALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Confidence 78888999999999999999999986 44 466788887777766 9999999999988643
No 115
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.50 E-value=3.6e-06 Score=67.44 Aligned_cols=101 Identities=9% Similarity=-0.003 Sum_probs=71.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 046221 423 WNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLL 501 (572)
Q Consensus 423 ~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 501 (572)
+..+...+...|++++|...|+.... +.| +...|..+..++...|++++|+..|+++++.. +.+...+..+..++
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~--p~~~~a~~~lg~~l 102 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD--ASHPEPVYQTGVCL 102 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcHHHHHHHHHH
Confidence 44456667777888888888887776 445 44777777777888888888888888776533 45666777777778
Q ss_pred HhhCChhHHHHHHHhccC-CCChHHHH
Q 046221 502 ARAGCLSDASGLAGKLLE-GMGPNIWR 527 (572)
Q Consensus 502 ~~~g~~~~A~~~~~~~~~-~~~~~~~~ 527 (572)
.+.|++++|...+++... .|+...+.
T Consensus 103 ~~~g~~~eAi~~~~~Al~~~p~~~~~~ 129 (144)
T PRK15359 103 KMMGEPGLAREAFQTAIKMSYADASWS 129 (144)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 888888888888887766 45444333
No 116
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.50 E-value=4.3e-05 Score=64.69 Aligned_cols=130 Identities=15% Similarity=0.074 Sum_probs=104.9
Q ss_pred CchhHHHHHHHHhhhcCChHHHHHHHHHc--CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-HHHHHHHH
Q 046221 386 RYRSVQNCLISSYSKCGNVDLAYIVFEEM--GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD-SSTYLSIL 462 (572)
Q Consensus 386 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~l~ 462 (572)
.+.......+....+.|++..|...+.+. .-++|...|+.+.-+|.+.|+.+.|..-|.+..+ +.|+ ...++.+.
T Consensus 98 ~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlg 175 (257)
T COG5010 98 KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALE--LAPNEPSIANNLG 175 (257)
T ss_pred ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHH--hccCCchhhhhHH
Confidence 34445555778888899999999999988 6667889999999999999999999999999888 5664 47788888
Q ss_pred HHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC
Q 046221 463 NACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 463 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
..+.-.|+.+.|..++..... . -+-|..+-..+.-+....|++.+|..+...-..
T Consensus 176 ms~~L~gd~~~A~~lll~a~l-~-~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~~ 230 (257)
T COG5010 176 MSLLLRGDLEDAETLLLPAYL-S-PAADSRVRQNLALVVGLQGDFREAEDIAVQELL 230 (257)
T ss_pred HHHHHcCCHHHHHHHHHHHHh-C-CCCchHHHHHHHHHHhhcCChHHHHhhcccccc
Confidence 888889999999999988853 3 133666777888888899999999988877654
No 117
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.49 E-value=1.1e-05 Score=71.69 Aligned_cols=186 Identities=11% Similarity=-0.015 Sum_probs=109.7
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCC-HhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCch--hHHH
Q 046221 316 SLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVD-SITLVSILTASGELAALEICLQLHGIAFEAGFPRYR--SVQN 392 (572)
Q Consensus 316 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 392 (572)
....+..+...+.+.|++++|...|+++....+..|. ...+..+..++...|+++.|...++.+.+....... ..+.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 4456677777888888888888888887633332222 234555666677777777777777777654321111 1233
Q ss_pred HHHHHhhhc--------CChHHHHHHHHHc-CCCCCH-hHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 046221 393 CLISSYSKC--------GNVDLAYIVFEEM-GFLRDV-VSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSIL 462 (572)
Q Consensus 393 ~l~~~~~~~--------g~~~~A~~~~~~~-~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 462 (572)
.+..++... |+.++|.+.++++ ...|+. ..+..+... ..+... . ......+.
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~--------------~~~~~~---~-~~~~~~~a 173 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRM--------------DYLRNR---L-AGKELYVA 173 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHH--------------HHHHHH---H-HHHHHHHH
Confidence 333334332 5566666666665 222332 122111100 000000 0 00112455
Q ss_pred HHHhccCChHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhhCChhHHHHHHHhccC
Q 046221 463 NACGHAGLTNDGLVIFNQMIEENKVKP-SQEHYGCVVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 463 ~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
..+.+.|++.+|+..++.+++...-.| ....+..++.++.+.|++++|...++.+..
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 668889999999999999886543222 345788899999999999999998887754
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.48 E-value=2.3e-05 Score=66.62 Aligned_cols=115 Identities=11% Similarity=0.073 Sum_probs=78.7
Q ss_pred cCChHHHHHHHHHc--CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHH-hccCC--hHHH
Q 046221 401 CGNVDLAYIVFEEM--GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNAC-GHAGL--TNDG 474 (572)
Q Consensus 401 ~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~-~~~g~--~~~a 474 (572)
.++.+++...+++. ..+.+...|..+...|...|++++|...|++..+ +.| +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 45556666666555 3335567777777778788888888888887777 455 446666666653 56566 4778
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC
Q 046221 475 LVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
.++++++++.. +-+...+..+...+.+.|++++|...++++.+
T Consensus 130 ~~~l~~al~~d--P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 130 REMIDKALALD--ANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHhC--CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88888777544 34555677777777788888888888888766
No 119
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.44 E-value=2e-05 Score=76.05 Aligned_cols=229 Identities=11% Similarity=0.036 Sum_probs=173.4
Q ss_pred HHHHHHhcccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHHHHHHhccCC--CCcchHHHHHHHHHHcCC
Q 046221 255 LNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE--KSLVSWTAIISGYVQNGC 332 (572)
Q Consensus 255 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~ 332 (572)
..+...+.+.|-...|..+++.+. .+..++.+|+..|+..+|..+..+..+ |+...|..+.+......-
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHH
Confidence 345566777888888998888765 345688899999999999888776554 667788888888877777
Q ss_pred hHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHH
Q 046221 333 AREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFE 412 (572)
Q Consensus 333 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 412 (572)
+++|+++.+..... .-..+.....+.++++++.+-++.-.+.+ +....+|-.+..+..+.+++..|.+.|.
T Consensus 473 yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 473 YEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 89999998877422 12222222344788999998888776654 4556677777888889999999999999
Q ss_pred Hc-CCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC
Q 046221 413 EM-GFLRD-VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPS 490 (572)
Q Consensus 413 ~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 490 (572)
.. ...|+ ...||.+-.+|.+.++..+|...+++..+.+ .-+...|...+-...+.|.+++|.+.+.++........|
T Consensus 544 rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d 622 (777)
T KOG1128|consen 544 RCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKD 622 (777)
T ss_pred HHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhccc
Confidence 88 44465 6789999999999999999999999999976 445566666777778999999999999988755433445
Q ss_pred hhHHHHHHHHHH
Q 046221 491 QEHYGCVVDLLA 502 (572)
Q Consensus 491 ~~~~~~l~~~~~ 502 (572)
..+...++....
T Consensus 623 ~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 623 DEVLLIIVRTVL 634 (777)
T ss_pred chhhHHHHHHHH
Confidence 555555554443
No 120
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.44 E-value=0.0016 Score=61.16 Aligned_cols=412 Identities=10% Similarity=0.049 Sum_probs=200.1
Q ss_pred CCceeHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHH
Q 046221 113 PYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVL 192 (572)
Q Consensus 113 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 192 (572)
-|+.+|+.||+-+... ..+++.+.++++... .+-....|..-|..-....+++.++.+|.+.+..-+ +...|...+
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lYl 93 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLYL 93 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHHH
Confidence 5688999999988766 999999999999864 333556788888888999999999999999887643 455555555
Q ss_pred HHHHh-CCCHHHH----HHHHhhcCC------CCcccHHHHHHHH---------HccCCHHHHHHHHHHHHhCCCCC---
Q 046221 193 DMYSC-LMDLDAA----IQIFREMEC------KDVISWTRMMGLF---------VDFEYAGDALKIFREMRKSRIIC--- 249 (572)
Q Consensus 193 ~~~~~-~~~~~~a----~~~~~~~~~------~~~~~~~~li~~~---------~~~~~~~~a~~~~~~m~~~~~~p--- 249 (572)
+---+ .|+...+ .+.|+-... .+...|+..+..+ ..+.+.+...++|+++....+.-
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 43222 2333321 122221111 2333455544332 23345556667777766431110
Q ss_pred ---CccchHHHHHH-------hcccCChHHHHHHHHHHHH--hCCCCCcchHHHHHHHHHhcCChhH--HHHHHhccC--
Q 046221 250 ---DTVALLNLISV-------NAILGDLKRGKQLHAQVVL--GGLQSELRLSNSIIAMYSKCGDLDS--SRSVFNQIT-- 313 (572)
Q Consensus 250 ---~~~~~~~ll~~-------~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~--a~~~~~~~~-- 313 (572)
|-.+|-.-|+. --+...+..|.++++++.. .|+.....+. -..|-.++ ..+++....
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~v-------p~~~T~~e~~qv~~W~n~I~w 246 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAV-------PPKGTKDEIQQVELWKNWIKW 246 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCC-------CCCCChHHHHHHHHHHHHHHH
Confidence 01111111110 0122334455555555543 1211110000 00000011 111111110
Q ss_pred -CCCc--------------chHHHHHHHHHHcCC-hHHHHHHHHHHH---hcCCCCCCHhHHHHHHHHhcccccHHHHHH
Q 046221 314 -EKSL--------------VSWTAIISGYVQNGC-AREALNQFIKMR---QEKTDSVDSITLVSILTASGELAALEICLQ 374 (572)
Q Consensus 314 -~~~~--------------~~~~~l~~~~~~~~~-~~~a~~~~~~~~---~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 374 (572)
+.|. .+|...+..+.-+-+ +-++-..+.... ...|..|+... ..+++..
T Consensus 247 EksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~------------~t~e~~~ 314 (656)
T KOG1914|consen 247 EKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKS------------LTDEAAS 314 (656)
T ss_pred HhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchh------------hHHHHHH
Confidence 0000 111111111110000 111111111111 01111111111 1233444
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHhhhc---CChHHHHHHHHHc----CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 046221 375 LHGIAFEAGFPRYRSVQNCLISSYSKC---GNVDLAYIVFEEM----GFLRDVVSWNTIIYGYGVNGHGETALALYHKMT 447 (572)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 447 (572)
+++.....-..-+..+|..+.+---.. ...+.....++++ ...|+ .+|..+++.-.+..-...|..+|.++.
T Consensus 315 ~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR 393 (656)
T KOG1914|consen 315 IYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAR 393 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHh
Confidence 444443332222333333322211111 1233334444444 33233 456666666666666777777777777
Q ss_pred hcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccCC---CC-
Q 046221 448 ETGEVP-DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEG---MG- 522 (572)
Q Consensus 448 ~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~- 522 (572)
+.+..+ +......++.-++ .++.+-|.++|+--++.. .-++......++.+...++-..|..+|++.... ++
T Consensus 394 ~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf--~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~k 470 (656)
T KOG1914|consen 394 EDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKF--GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADK 470 (656)
T ss_pred hccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhc--CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhh
Confidence 776666 4455666665444 466777777777766554 234445556677777777777777777777652 22
Q ss_pred -hHHHHHHHHHHhhhcCCHHHHHHHHHHHHh
Q 046221 523 -PNIWRALLSGCVLHVGRFQDAEALRSGSQK 552 (572)
Q Consensus 523 -~~~~~~l~~~~~~~~g~~~~A~~~~~~m~~ 552 (572)
...|..++.--..- |+...+.++-+++..
T Consensus 471 s~~Iw~r~l~yES~v-GdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 471 SKEIWDRMLEYESNV-GDLNSILKLEKRRFT 500 (656)
T ss_pred hHHHHHHHHHHHHhc-ccHHHHHHHHHHHHH
Confidence 23577777665555 777777776666543
No 121
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.43 E-value=5.1e-06 Score=66.58 Aligned_cols=110 Identities=11% Similarity=-0.029 Sum_probs=90.6
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC
Q 046221 440 LALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 440 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
..++++.++ +.|+. +..+..++...|++++|...|+.++... +.+...+..+..++.+.|++++|...|+++..
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 466777777 56664 4567788899999999999999998644 55777899999999999999999999999988
Q ss_pred --CCChHHHHHHHHHHhhhcCCHHHHHHHHHHHHhCCCC
Q 046221 520 --GMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGII 556 (572)
Q Consensus 520 --~~~~~~~~~l~~~~~~~~g~~~~A~~~~~~m~~~~~~ 556 (572)
+.++..+..+...+... |++++|...+++..+..+.
T Consensus 87 l~p~~~~a~~~lg~~l~~~-g~~~eAi~~~~~Al~~~p~ 124 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMM-GEPGLAREAFQTAIKMSYA 124 (144)
T ss_pred cCCCCcHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC
Confidence 55666777777777666 9999999999999887654
No 122
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.42 E-value=9.2e-05 Score=76.73 Aligned_cols=223 Identities=11% Similarity=0.080 Sum_probs=126.7
Q ss_pred chHHHHHHhcccCChHHHHHHHHHHHHhC-CC---CCcchHHHHHHHHHhcCChhHHHHHHhccCCC-C-cchHHHHHHH
Q 046221 253 ALLNLISVNAILGDLKRGKQLHAQVVLGG-LQ---SELRLSNSIIAMYSKCGDLDSSRSVFNQITEK-S-LVSWTAIISG 326 (572)
Q Consensus 253 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~l~~~ 326 (572)
.|..-|.-....++.+.|+++.++++..- +. --..+|.++++.-..-|.-+...++|++..+- | ...|..|...
T Consensus 1460 ~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~i 1539 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGI 1539 (1710)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 34444455555566666666666655421 11 11235555665555556666666666666542 2 2456666666
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCC-CchhHHHHHHHHhhhcCChH
Q 046221 327 YVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFP-RYRSVQNCLISSYSKCGNVD 405 (572)
Q Consensus 327 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~ 405 (572)
|.+.+..++|.++++.|.+.-+ -....|...+..+.+.++.+.|..++.+..+.-.+ -......-.++.-.+.|+.+
T Consensus 1540 y~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDae 1617 (1710)
T KOG1070|consen 1540 YEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAE 1617 (1710)
T ss_pred HHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCch
Confidence 7777777777777777754333 34445666666666666666666666665543211 12333344455556667777
Q ss_pred HHHHHHHHc--CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHhccCChHHHHHH
Q 046221 406 LAYIVFEEM--GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS--STYLSILNACGHAGLTNDGLVI 477 (572)
Q Consensus 406 ~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~a~~~ 477 (572)
.+..+|+.. ..+.....|+..+..-.++|+.+.+..+|++....++.|-. ..|...+..=-..|+-+.+..+
T Consensus 1618 RGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1618 RGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred hhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 777777666 44334556777777777777777777777777776666533 4444455444444544444333
No 123
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=0.00037 Score=59.17 Aligned_cols=246 Identities=12% Similarity=0.027 Sum_probs=151.9
Q ss_pred HHHhcCChhHHHHHHhccCC--CCcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHH
Q 046221 295 MYSKCGDLDSSRSVFNQITE--KSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEIC 372 (572)
Q Consensus 295 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 372 (572)
-+.-.|++..++..-..... .++..-.-+.++|...|.+.... .++ ..+..|....+..+.......++.+..
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~---~eI--~~~~~~~lqAvr~~a~~~~~e~~~~~~ 91 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVI---SEI--KEGKATPLQAVRLLAEYLELESNKKSI 91 (299)
T ss_pred HHHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcccccccc---ccc--ccccCChHHHHHHHHHHhhCcchhHHH
Confidence 34444666666554443332 22223333445555555543332 222 222244444444444444444544443
Q ss_pred HH-HHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 046221 373 LQ-LHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE 451 (572)
Q Consensus 373 ~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~ 451 (572)
.. +.+.+.......+......-...|++.|++++|++..... ...+ ....=+..+.+..+.+-|.+.+++|.+
T Consensus 92 ~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-~~lE--~~Al~VqI~lk~~r~d~A~~~lk~mq~--- 165 (299)
T KOG3081|consen 92 LASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-ENLE--AAALNVQILLKMHRFDLAEKELKKMQQ--- 165 (299)
T ss_pred HHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-chHH--HHHHHHHHHHHHHHHHHHHHHHHHHHc---
Confidence 33 3444444444444333344456788999999999999884 2223 232334456677889999999999997
Q ss_pred CCCHHHHHHHHHHHh----ccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC--CCChHH
Q 046221 452 VPDSSTYLSILNACG----HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE--GMGPNI 525 (572)
Q Consensus 452 ~p~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~ 525 (572)
--+..|.+.|..++. ..+++.+|.-+|+++-++ .+|+..+.+....++...|++++|..+++.+.. ..++.+
T Consensus 166 ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpet 243 (299)
T KOG3081|consen 166 IDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPET 243 (299)
T ss_pred cchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHH
Confidence 245577877777764 445799999999999543 589999999999999999999999999999987 455666
Q ss_pred HHHHHHHHhhhcCCHHHH-HHHHHHHHhCC
Q 046221 526 WRALLSGCVLHVGRFQDA-EALRSGSQKKG 554 (572)
Q Consensus 526 ~~~l~~~~~~~~g~~~~A-~~~~~~m~~~~ 554 (572)
...++...... |+..++ .+.+.++....
T Consensus 244 L~Nliv~a~~~-Gkd~~~~~r~l~QLk~~~ 272 (299)
T KOG3081|consen 244 LANLIVLALHL-GKDAEVTERNLSQLKLSH 272 (299)
T ss_pred HHHHHHHHHHh-CCChHHHHHHHHHHHhcC
Confidence 65555544434 665444 45555554433
No 124
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.40 E-value=3.3e-05 Score=65.37 Aligned_cols=154 Identities=17% Similarity=0.107 Sum_probs=124.2
Q ss_pred HHHHHHhhhcCChHHHHHHHHHc--CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccC
Q 046221 392 NCLISSYSKCGNVDLAYIVFEEM--GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAG 469 (572)
Q Consensus 392 ~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 469 (572)
..+-..+...|+-+....+.... ..+.|.......+....+.|++..|...+.+.... -++|..+|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHcc
Confidence 44566677788888888888887 33345556667889999999999999999999984 3557799999999999999
Q ss_pred ChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC-CC-ChHHHHHHHHHHhhhcCCHHHHHHHH
Q 046221 470 LTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE-GM-GPNIWRALLSGCVLHVGRFQDAEALR 547 (572)
Q Consensus 470 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~g~~~~A~~~~ 547 (572)
+.+.|..-|.++++-. +-+...++.+.-.|.-.|+.+.|..++..... ++ +..+-..|....... |++++|..+.
T Consensus 149 r~~~Ar~ay~qAl~L~--~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~-g~~~~A~~i~ 225 (257)
T COG5010 149 RFDEARRAYRQALELA--PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQ-GDFREAEDIA 225 (257)
T ss_pred ChhHHHHHHHHHHHhc--cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhc-CChHHHHhhc
Confidence 9999999999998654 34556788888889999999999999999887 33 555666666666556 9999998876
Q ss_pred HH
Q 046221 548 SG 549 (572)
Q Consensus 548 ~~ 549 (572)
..
T Consensus 226 ~~ 227 (257)
T COG5010 226 VQ 227 (257)
T ss_pred cc
Confidence 54
No 125
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.38 E-value=1.4e-05 Score=67.83 Aligned_cols=150 Identities=13% Similarity=0.148 Sum_probs=112.9
Q ss_pred HHHhhhcCChHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChHH
Q 046221 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNACGHAGLTND 473 (572)
Q Consensus 395 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~ 473 (572)
+-.|...|+++.+....+.+..+.. .+...++.+++...+++..+. .| |...|..+...|...|++++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~ 91 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPLH---------QFASQQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDN 91 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCccc---------cccCchhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHH
Confidence 3467788888777555544311111 122356778888888888874 45 66899999999999999999
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHH-HhhCC--hhHHHHHHHhccC-CC-ChHHHHHHHHHHhhhcCCHHHHHHHHH
Q 046221 474 GLVIFNQMIEENKVKPSQEHYGCVVDLL-ARAGC--LSDASGLAGKLLE-GM-GPNIWRALLSGCVLHVGRFQDAEALRS 548 (572)
Q Consensus 474 a~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~g~~~~A~~~~~ 548 (572)
|...|+++++.. +.+...+..+..++ ...|+ .++|.+++++... .| ++..+..+...+... |++++|+..++
T Consensus 92 A~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~-g~~~~Ai~~~~ 168 (198)
T PRK10370 92 ALLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQ-ADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 999999998644 45667888888864 67777 5999999999988 55 555666666666666 99999999999
Q ss_pred HHHhCCCCCC
Q 046221 549 GSQKKGIIKI 558 (572)
Q Consensus 549 ~m~~~~~~~~ 558 (572)
++.+...+.+
T Consensus 169 ~aL~l~~~~~ 178 (198)
T PRK10370 169 KVLDLNSPRV 178 (198)
T ss_pred HHHhhCCCCc
Confidence 9988877644
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.38 E-value=8.5e-05 Score=68.65 Aligned_cols=138 Identities=14% Similarity=0.089 Sum_probs=98.7
Q ss_pred HhhhcCChHHHHHHHHHc-CCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHhccCChHH
Q 046221 397 SYSKCGNVDLAYIVFEEM-GFLRD-VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS-STYLSILNACGHAGLTND 473 (572)
Q Consensus 397 ~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~ 473 (572)
.+...|++++|+..++.+ ...|+ +..+......+.+.|+..+|.+.++++.. ..|+. .....+..++.+.|++.+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhcCChHH
Confidence 345677888888888887 33344 44555566778888888888888888887 56764 556667778888888888
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccCCCChHHHHHHHHHHhhhcCCHHHHHHHHHHHHhC
Q 046221 474 GLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKK 553 (572)
Q Consensus 474 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~A~~~~~~m~~~ 553 (572)
|+.+++..... .+-|+..|..|.++|...|+..+|.....+.. ... |+|+.|+..+....++
T Consensus 393 ai~~L~~~~~~--~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~---------------~~~-G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 393 AIRILNRYLFN--DPEDPNGWDLLAQAYAELGNRAEALLARAEGY---------------ALA-GRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHhhc--CCCCchHHHHHHHHHHHhCchHHHHHHHHHHH---------------HhC-CCHHHHHHHHHHHHHh
Confidence 88888887543 36677788888888888888888776655442 233 7777777777666655
Q ss_pred C
Q 046221 554 G 554 (572)
Q Consensus 554 ~ 554 (572)
.
T Consensus 455 ~ 455 (484)
T COG4783 455 V 455 (484)
T ss_pred c
Confidence 4
No 127
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.37 E-value=0.0024 Score=60.06 Aligned_cols=148 Identities=14% Similarity=0.108 Sum_probs=91.5
Q ss_pred hHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCC-chhHHHHHHHHhhhcCChHHHHHHH
Q 046221 333 AREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPR-YRSVQNCLISSYSKCGNVDLAYIVF 411 (572)
Q Consensus 333 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 411 (572)
.+.....+++........|+ .+|...+....+..-++.|..+|.++.+.+..+ .+.++++++.-+| .++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 44455555555523333333 345555666666667777777777777766665 5666666666555 46667777777
Q ss_pred HHc--CCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHhccCChHHHHHHHHHhHH
Q 046221 412 EEM--GFLRD-VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS--STYLSILNACGHAGLTNDGLVIFNQMIE 483 (572)
Q Consensus 412 ~~~--~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 483 (572)
+-- .. +| +.--...+.-+...++-..|..+|++....++.|+. ..|..++.-=+.-|+...+.++-+++..
T Consensus 425 eLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 425 ELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 654 22 33 223344555666667777777777777776666644 6677777777777777777777666543
No 128
>PLN02789 farnesyltranstransferase
Probab=98.37 E-value=0.00011 Score=67.21 Aligned_cols=174 Identities=7% Similarity=-0.106 Sum_probs=85.7
Q ss_pred HHHHHhhcCChhhHHHHhccCCCCCh---hhHHHHHHHHhhCC-ChHHHHHHHHHHHHcCCCCCcchHHHHHHHHcCCCC
Q 046221 11 LLSNYFKSGKIKEAENLFDEIPEKNV---VSWSIVIHGYSING-FHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQN 86 (572)
Q Consensus 11 l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 86 (572)
+-..+...++.++|+.+.+.+.+.++ .+|+.--..+...| .+++++..++.+.+.+ +-+..+|+.....+.+.|+
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGP 121 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCc
Confidence 34444555566666666666554222 33443333444444 4566666666666543 2333344443333333343
Q ss_pred --hHHHHHHHHHHHHhcCCCCcccCCCCCCceeHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcc-
Q 046221 87 --LELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL- 163 (572)
Q Consensus 87 --~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~- 163 (572)
.+++..+++.+++..+ .|..+|+...-++...|+++++++.++++.+.++. |...|+.....+.+.
T Consensus 122 ~~~~~el~~~~kal~~dp----------kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~ 190 (320)
T PLN02789 122 DAANKELEFTRKILSLDA----------KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSP 190 (320)
T ss_pred hhhHHHHHHHHHHHHhCc----------ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcc
Confidence 2445556656655544 44456666666666666666666666666655422 334444433333222
Q ss_pred --CCh----HHHHHHHHHHHHhcCCCChhHHhHHHHHHHh
Q 046221 164 --GSR----ALCELIHGLTIKLGLILDVSVNNSVLDMYSC 197 (572)
Q Consensus 164 --~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 197 (572)
|.. +...+....++... +-|...|+.+...+..
T Consensus 191 ~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 191 LLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKD 229 (320)
T ss_pred ccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhc
Confidence 111 23344444444433 3445555555555544
No 129
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.35 E-value=0.0023 Score=58.88 Aligned_cols=128 Identities=16% Similarity=0.111 Sum_probs=84.6
Q ss_pred HhhhcCC-hHHHHHHHHHc-CCCC-CHhHHHHH----HHHHHh---cCChHHHHHHHHHHHhcCCCC----CHHHHHHHH
Q 046221 397 SYSKCGN-VDLAYIVFEEM-GFLR-DVVSWNTI----IYGYGV---NGHGETALALYHKMTETGEVP----DSSTYLSIL 462 (572)
Q Consensus 397 ~~~~~g~-~~~A~~~~~~~-~~~~-~~~~~~~l----~~~~~~---~~~~~~A~~~~~~~~~~g~~p----~~~~~~~l~ 462 (572)
-+.+.|. -++|+++++.+ .+.+ |...-|.+ =.+|.+ ...+..-+.+-+-+.+.|+.| +...-+.|.
T Consensus 388 ~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~La 467 (549)
T PF07079_consen 388 HLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLA 467 (549)
T ss_pred HHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHH
Confidence 3455565 77888888877 3333 33222222 122322 223444455555566778877 334455666
Q ss_pred HH--HhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccCCCChHHHHHH
Q 046221 463 NA--CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRAL 529 (572)
Q Consensus 463 ~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l 529 (572)
+| +...|++.++.-.-....+ +.|++.+|..++-++....++++|.+++.++ +|+..++++-
T Consensus 468 DAEyLysqgey~kc~~ys~WL~~---iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L--P~n~~~~dsk 531 (549)
T PF07079_consen 468 DAEYLYSQGEYHKCYLYSSWLTK---IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL--PPNERMRDSK 531 (549)
T ss_pred HHHHHHhcccHHHHHHHHHHHHH---hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC--CCchhhHHHH
Confidence 55 5678999998877666643 6799999999999999999999999999998 4677776643
No 130
>PLN02789 farnesyltranstransferase
Probab=98.33 E-value=0.00069 Score=62.12 Aligned_cols=180 Identities=14% Similarity=0.058 Sum_probs=93.0
Q ss_pred cHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCCh--HHHHHHHHHc--CCCCCHhHHHHHHHHHHhcCChHHHHHHH
Q 046221 368 ALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV--DLAYIVFEEM--GFLRDVVSWNTIIYGYGVNGHGETALALY 443 (572)
Q Consensus 368 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 443 (572)
+++++...++.+.+.. +.+..+|+....++.+.|+. +++..+++++ ..+.+..+|+....++...|+++++++.+
T Consensus 87 ~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~ 165 (320)
T PLN02789 87 DLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYC 165 (320)
T ss_pred hHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3455555555555443 23333444333333444432 4556666555 23245666666666666667777777777
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHhcc---CC----hHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhh----CChhHHHH
Q 046221 444 HKMTETGEVPDSSTYLSILNACGHA---GL----TNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARA----GCLSDASG 512 (572)
Q Consensus 444 ~~~~~~g~~p~~~~~~~l~~~~~~~---g~----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~ 512 (572)
+++++.+. -|...|+.....+.+. |. .++++.+..++++.. +-+...|+.+...+... ++..+|.+
T Consensus 166 ~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~--P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~ 242 (320)
T PLN02789 166 HQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN--PRNESPWRYLRGLFKDDKEALVSDPEVSS 242 (320)
T ss_pred HHHHHHCC-CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC--CCCcCHHHHHHHHHhcCCcccccchhHHH
Confidence 77776431 1334454444443332 22 235566665665443 34445666666555552 33455666
Q ss_pred HHHhccC-CC-ChHHHHHHHHHHhhhcC-----------------CHHHHHHHHHHHH
Q 046221 513 LAGKLLE-GM-GPNIWRALLSGCVLHVG-----------------RFQDAEALRSGSQ 551 (572)
Q Consensus 513 ~~~~~~~-~~-~~~~~~~l~~~~~~~~g-----------------~~~~A~~~~~~m~ 551 (572)
++.+... .| ++.....|+..+..... ..++|.++++.|.
T Consensus 243 ~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 243 VCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 6666544 22 33344455555543211 3467888888873
No 131
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.31 E-value=0.00024 Score=72.85 Aligned_cols=173 Identities=13% Similarity=0.147 Sum_probs=97.5
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCccchHHHHHHhcccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHH
Q 046221 226 FVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSS 305 (572)
Q Consensus 226 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 305 (572)
.....++.-+..+...|.+. .-+...+..+..+|.+.|+.+++..+|+++++.. +.++.+.|.+...|... ++++|
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred cccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHH
Confidence 33334443333444444432 2233456666667777777777777777777766 55666777777777777 77777
Q ss_pred HHHHhccCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHh-cC
Q 046221 306 RSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEA-GF 384 (572)
Q Consensus 306 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~ 384 (572)
..++.+.. ..+...+++..+.++|.++...... + .+.-..+.+.+... +.
T Consensus 169 ~~m~~KAV-----------~~~i~~kq~~~~~e~W~k~~~~~~~--d----------------~d~f~~i~~ki~~~~~~ 219 (906)
T PRK14720 169 ITYLKKAI-----------YRFIKKKQYVGIEEIWSKLVHYNSD--D----------------FDFFLRIERKVLGHREF 219 (906)
T ss_pred HHHHHHHH-----------HHHHhhhcchHHHHHHHHHHhcCcc--c----------------chHHHHHHHHHHhhhcc
Confidence 77766532 2366666777888888877522111 1 11122222222222 22
Q ss_pred CCchhHHHHHHHHhhhcCChHHHHHHHHHc-CCCC-CHhHHHHHHHHHH
Q 046221 385 PRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFLR-DVVSWNTIIYGYG 431 (572)
Q Consensus 385 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~ 431 (572)
.--..++-.+...|-..++++++..+++.+ ...| +.....-++.+|.
T Consensus 220 ~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 220 TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 233344445556667777777777777777 3333 3444555555554
No 132
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.23 E-value=2.3e-06 Score=49.42 Aligned_cols=35 Identities=26% Similarity=0.543 Sum_probs=32.3
Q ss_pred hhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCc
Q 046221 37 VSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNS 71 (572)
Q Consensus 37 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 71 (572)
.+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999974
No 133
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.22 E-value=2.4e-06 Score=49.32 Aligned_cols=34 Identities=21% Similarity=0.435 Sum_probs=29.5
Q ss_pred eHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCH
Q 046221 117 SCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNA 150 (572)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 150 (572)
+||.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6888999999999999999999999888888873
No 134
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.22 E-value=0.0084 Score=60.11 Aligned_cols=510 Identities=13% Similarity=0.055 Sum_probs=266.3
Q ss_pred hhcCChhhHHHHhccCCCCCh-hhHHHHHHH--HhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHcCCCChHHHHH
Q 046221 16 FKSGKIKEAENLFDEIPEKNV-VSWSIVIHG--YSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARS 92 (572)
Q Consensus 16 ~~~~~~~~A~~~~~~~~~~~~-~~~~~li~~--~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 92 (572)
...+++..|....+.+.+..+ ..|..++.+ +.+.|+.++|..+++.....+.. |..|...+-.+|.+.++.++|..
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence 355778888888887765322 245555555 46789999999999887765533 77788888899999999999999
Q ss_pred HHHHHHHhcCCCCcccCCCCCCceeHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC--------
Q 046221 93 IHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG-------- 164 (572)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-------- 164 (572)
++++..+.. |+......+..+|++.+++.+-.+.=-+|.+. .+-+...+-.+++...+.-
T Consensus 99 ~Ye~~~~~~-----------P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~ 166 (932)
T KOG2053|consen 99 LYERANQKY-----------PSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLD 166 (932)
T ss_pred HHHHHHhhC-----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCccccc
Confidence 999998875 44445555666777777775544443333332 2334555556665544321
Q ss_pred --ChHHHHHHHHHHHHhc-CCCChhHHhHHHHHHHhCCCHHHHHHHHh-hcCC----CCcccHHHHHHHHHccCCHHHHH
Q 046221 165 --SRALCELIHGLTIKLG-LILDVSVNNSVLDMYSCLMDLDAAIQIFR-EMEC----KDVISWTRMMGLFVDFEYAGDAL 236 (572)
Q Consensus 165 --~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~----~~~~~~~~li~~~~~~~~~~~a~ 236 (572)
-...|...++.+++.+ -.-+..-.-.-...+...|++++|..++. ..-+ -+...-+.-+..+...+++.+..
T Consensus 167 ~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~ 246 (932)
T KOG2053|consen 167 PILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELF 246 (932)
T ss_pred chhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHH
Confidence 1234555566665543 11111112222344556788999988883 2222 23334445667777888888888
Q ss_pred HHHHHHHhCCCCCCccchHHHHH-------Hh---------cccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHH---
Q 046221 237 KIFREMRKSRIICDTVALLNLIS-------VN---------AILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYS--- 297 (572)
Q Consensus 237 ~~~~~m~~~~~~p~~~~~~~ll~-------~~---------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--- 297 (572)
++-.++...| +|. |...+. .. ...+..+...+........ .....|-+-+.++.
T Consensus 247 ~l~~~Ll~k~--~Dd--y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~---~~Rgp~LA~lel~kr~~ 319 (932)
T KOG2053|consen 247 ELSSRLLEKG--NDD--YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGS---KSRGPYLARLELDKRYK 319 (932)
T ss_pred HHHHHHHHhC--Ccc--hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcc---cccCcHHHHHHHHHHhc
Confidence 8888888775 333 222211 11 1111222222222222211 11222333333333
Q ss_pred hcCChhHHHHHH-hccCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC-CH-----hHHHHHH-HHhc--ccc
Q 046221 298 KCGDLDSSRSVF-NQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV-DS-----ITLVSIL-TASG--ELA 367 (572)
Q Consensus 298 ~~~~~~~a~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-----~~~~~ll-~~~~--~~~ 367 (572)
.-|+.+++...| +..-.. ..|..=+..|...=..+.-..++.......+... |. .+....+ ..++ ..-
T Consensus 320 ~~gd~ee~~~~y~~kfg~k--pcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l 397 (932)
T KOG2053|consen 320 LIGDSEEMLSYYFKKFGDK--PCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKL 397 (932)
T ss_pred ccCChHHHHHHHHHHhCCC--cHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccC
Confidence 346666655443 222211 1111111122222122222223322220100000 00 0111111 1111 011
Q ss_pred cHHHHHHHHHHHH---Hhc------CCCchh---------HHHHHHHHhhhcCChHH---HHHHHHHc-CCCCC-HhHHH
Q 046221 368 ALEICLQLHGIAF---EAG------FPRYRS---------VQNCLISSYSKCGNVDL---AYIVFEEM-GFLRD-VVSWN 424 (572)
Q Consensus 368 ~~~~a~~~~~~~~---~~~------~~~~~~---------~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~~~-~~~~~ 424 (572)
+.+....++.++. +.| +-|+.. +-+.+++.+.+.++... |+-+++.- ...|+ ..+--
T Consensus 398 ~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KL 477 (932)
T KOG2053|consen 398 PADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKL 477 (932)
T ss_pred ChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHH
Confidence 2233333332221 222 122322 23677888888888663 33334433 33333 34444
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhh
Q 046221 425 TIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARA 504 (572)
Q Consensus 425 ~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 504 (572)
.+|..|+--|-+..|.++|+.+--+.+.-|..-|.. ..-+...|++..+...+....+-.+ ..-..+-..+..+| +.
T Consensus 478 lLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~-~~~~~t~g~~~~~s~~~~~~lkfy~-~~~kE~~eyI~~AY-r~ 554 (932)
T KOG2053|consen 478 LLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLI-FRRAETSGRSSFASNTFNEHLKFYD-SSLKETPEYIALAY-RR 554 (932)
T ss_pred HHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHH-HHHHHhcccchhHHHHHHHHHHHHh-hhhhhhHHHHHHHH-Hc
Confidence 578889888999999999999877777777765543 3445677888888888876653221 11112333334444 67
Q ss_pred CChhHHHHHHH---hccC---CCChHHHHHHHHHHhhhcCCHHHHHHHHHHHH
Q 046221 505 GCLSDASGLAG---KLLE---GMGPNIWRALLSGCVLHVGRFQDAEALRSGSQ 551 (572)
Q Consensus 505 g~~~~A~~~~~---~~~~---~~~~~~~~~l~~~~~~~~g~~~~A~~~~~~m~ 551 (572)
|.+.+..++.. ++.. .--..+-+..+...+.. ++.+.-...++.|.
T Consensus 555 g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~-~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 555 GAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNA-DRGTQLLKLLESMK 606 (932)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CcHHHHHHHHhccc
Confidence 77766655543 2321 11112333444444444 78888777777775
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=0.0013 Score=55.59 Aligned_cols=125 Identities=14% Similarity=0.114 Sum_probs=53.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhh
Q 046221 321 TAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400 (572)
Q Consensus 321 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 400 (572)
..++-+....|+.+.|...++.+.+.-+..+...-+.++ -+.-.|.+++|.++++.+.+.. |.|..++-.-+...-.
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam--~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAM--LLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 334444445555555555555554222111111111111 1223344455555555444443 3333333333333344
Q ss_pred cCChHHHHHHHHHc--CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 046221 401 CGNVDLAYIVFEEM--GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTE 448 (572)
Q Consensus 401 ~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 448 (572)
.|+.-+|++-+.+. .+..|...|.-+...|...|++++|.-.++++.-
T Consensus 133 ~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred cCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 44444444444433 3334444555555555555555555555555444
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.19 E-value=5.3e-05 Score=60.48 Aligned_cols=104 Identities=13% Similarity=0.111 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 046221 421 VSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDL 500 (572)
Q Consensus 421 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 500 (572)
.....+...+...|++++|...++.+.+.+ +.+...+..+...+...|++++|..+++.+++.. +.+...+..+..+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~ 94 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD--PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCChHHHHHHHHH
Confidence 334455566667777777777777776632 2244666667777777777777777777765432 4445566666777
Q ss_pred HHhhCChhHHHHHHHhccC-CCChHHHH
Q 046221 501 LARAGCLSDASGLAGKLLE-GMGPNIWR 527 (572)
Q Consensus 501 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~ 527 (572)
+...|++++|...+++..+ .|+...+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 7777777777777777666 55444433
No 137
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.18 E-value=0.00063 Score=69.92 Aligned_cols=234 Identities=9% Similarity=0.072 Sum_probs=125.7
Q ss_pred CcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCccchHHH-HHHhcccCChHHHHHHHHHHHHhCCCCCcchHHHHH
Q 046221 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNL-ISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSII 293 (572)
Q Consensus 215 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 293 (572)
+...+..|+..+...+++++|.++.+...+. .|+...+... ...+.+.++...+..+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 5567777888888888888888888866554 4554433222 2233444443333333 122
Q ss_pred HHHHhcCChhHHHHHHhccCC--CCcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHH
Q 046221 294 AMYSKCGDLDSSRSVFNQITE--KSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEI 371 (572)
Q Consensus 294 ~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 371 (572)
.......++..+..+...+.+ .+-.++..+..+|-+.|+.++|...++++.+.. +-|....+.+...++.. ++++
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHh-hHHH
Confidence 222222233222222222221 122355666677777777777777777775222 44556666666666666 6666
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc-CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhc-
Q 046221 372 CLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET- 449 (572)
Q Consensus 372 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~- 449 (572)
|.+++...... +...+++..+.++|.++ ...|+ +.+.-..+.+.+...
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~---------------d~d~f~~i~~ki~~~~ 217 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD---------------DFDFFLRIERKVLGHR 217 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc---------------cchHHHHHHHHHHhhh
Confidence 66666555443 44555666666666666 22232 122222333333322
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 046221 450 GEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLA 502 (572)
Q Consensus 450 g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 502 (572)
|..--..++..+-..|-..+++++++.+++.+++.. +-|.....-++.+|.
T Consensus 218 ~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~--~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 218 EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD--NKNNKAREELIRFYK 268 (906)
T ss_pred ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC--CcchhhHHHHHHHHH
Confidence 212223445555566777778888888888887533 334445556666654
No 138
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.18 E-value=3.3e-06 Score=48.27 Aligned_cols=33 Identities=15% Similarity=0.377 Sum_probs=30.1
Q ss_pred hhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCC
Q 046221 37 VSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLP 69 (572)
Q Consensus 37 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 69 (572)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999887
No 139
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.16 E-value=4.8e-05 Score=60.69 Aligned_cols=111 Identities=7% Similarity=-0.062 Sum_probs=87.9
Q ss_pred HHHHHHHhcCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC
Q 046221 441 ALYHKMTETGEVPDS-STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 441 ~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
..+++... ..|+. .....+...+...|++++|.+.++.+.+.. +.+...+..+..++.+.|++++|...+++...
T Consensus 4 ~~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 4 ATLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hhHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666 45644 556777888999999999999999997544 45777888999999999999999999999876
Q ss_pred --CCChHHHHHHHHHHhhhcCCHHHHHHHHHHHHhCCCC
Q 046221 520 --GMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGII 556 (572)
Q Consensus 520 --~~~~~~~~~l~~~~~~~~g~~~~A~~~~~~m~~~~~~ 556 (572)
+.++..+..+...+... |++++|...+++..+....
T Consensus 80 ~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 80 LDPDDPRPYFHAAECLLAL-GEPESALKALDLAIEICGE 117 (135)
T ss_pred cCCCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhccc
Confidence 44556676666666655 9999999999998876643
No 140
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.16 E-value=0.0011 Score=61.71 Aligned_cols=145 Identities=12% Similarity=0.056 Sum_probs=113.9
Q ss_pred HhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc-CCCCC-HhHHHHHHHHHHhcCChHHH
Q 046221 362 ASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFLRD-VVSWNTIIYGYGVNGHGETA 439 (572)
Q Consensus 362 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A 439 (572)
.....+..+.|+..++.+... .|.|+.......+.+.+.++.++|.+.++++ ...|+ ...+-.+..+|.+.|++.+|
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 445567778888888776654 3566777777888999999999999999998 55566 55566778899999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC
Q 046221 440 LALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 440 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
+.+++..... .+-|+..|..|.++|...|+..++.....+ .|...|+++.|...+....+
T Consensus 394 i~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE-------------------~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 394 IRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAE-------------------GYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHH-------------------HHHhCCCHHHHHHHHHHHHH
Confidence 9999998875 355779999999999999998888766543 35567899999999888877
Q ss_pred --CCChHHHH
Q 046221 520 --GMGPNIWR 527 (572)
Q Consensus 520 --~~~~~~~~ 527 (572)
+.+...|.
T Consensus 454 ~~~~~~~~~a 463 (484)
T COG4783 454 QVKLGFPDWA 463 (484)
T ss_pred hccCCcHHHH
Confidence 45555544
No 141
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.16 E-value=3.6e-06 Score=48.14 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=25.7
Q ss_pred eeHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC
Q 046221 116 VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVP 148 (572)
Q Consensus 116 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 148 (572)
.+|+.++.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467788888888888888888888888777766
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.14 E-value=8.3e-05 Score=69.43 Aligned_cols=122 Identities=14% Similarity=0.016 Sum_probs=81.0
Q ss_pred HHHHHHhhhcCChHHHHHHHHHc-CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccC
Q 046221 392 NCLISSYSKCGNVDLAYIVFEEM-GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNACGHAG 469 (572)
Q Consensus 392 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g 469 (572)
..++..+...++++.|..+++++ ...|+ ....++..+...++-.+|.+++++..+. .| +...+..-...|.+.+
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDPE--VAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcC
Confidence 44555556667777777777777 33344 3334666666677777777777777753 33 4455555556677777
Q ss_pred ChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC
Q 046221 470 LTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 470 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
+++.|+.+.+++++.. |-+..+|..|..+|.+.|+++.|+..++.+.-
T Consensus 249 ~~~lAL~iAk~av~ls--P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 249 KYELALEIAKKAVELS--PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 7777777777776433 33444777777777777777777777777664
No 143
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.11 E-value=0.014 Score=58.53 Aligned_cols=441 Identities=13% Similarity=0.042 Sum_probs=247.7
Q ss_pred hhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHc--CCCChHHHHHHHHHHHHhcCCCCcccCCCCCCceeHHHHHHH
Q 046221 47 SINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAA--GLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAG 124 (572)
Q Consensus 47 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (572)
...+++..|+.....+.+. .|+. .|..++.++. +.|+.++|..+++.....+. .|..+...+-..
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~----------~D~~tLq~l~~~ 86 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKG----------TDDLTLQFLQNV 86 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCC----------CchHHHHHHHHH
Confidence 4557889999999998775 4554 4666677665 89999999988887766655 356688889999
Q ss_pred HHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHHHHHHhCCC----
Q 046221 125 FINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMD---- 200 (572)
Q Consensus 125 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---- 200 (572)
|...|+.++|..+|++.... .|+..-...+..+|.+.+++.+-.++--++.+. .+-+...+=++++.......
T Consensus 87 y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~ 163 (932)
T KOG2053|consen 87 YRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENE 163 (932)
T ss_pred HHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcc
Confidence 99999999999999999874 678888888899999999888776665555553 35555555555555543321
Q ss_pred ------HHHHHHHHhhcCCCC--ccc---HHHHHHHHHccCCHHHHHHHHH-HHHhCCCCCCccchHHHHHHhcccCChH
Q 046221 201 ------LDAAIQIFREMECKD--VIS---WTRMMGLFVDFEYAGDALKIFR-EMRKSRIICDTVALLNLISVNAILGDLK 268 (572)
Q Consensus 201 ------~~~a~~~~~~~~~~~--~~~---~~~li~~~~~~~~~~~a~~~~~-~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 268 (572)
+.-|.+.++.+.+.+ ..+ ...-...+-..|++++|++++. ...+.-...+...-+.-+..+...+++.
T Consensus 164 ~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~ 243 (932)
T KOG2053|consen 164 LLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQ 243 (932)
T ss_pred cccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChH
Confidence 223555555555433 111 1122334456788999999984 3333323333334445566777788899
Q ss_pred HHHHHHHHHHHhCCCCCcchHHHHHHHHH----------------hcCChhHHHHHHhccCCC-CcchHHHHHHHHH---
Q 046221 269 RGKQLHAQVVLGGLQSELRLSNSIIAMYS----------------KCGDLDSSRSVFNQITEK-SLVSWTAIISGYV--- 328 (572)
Q Consensus 269 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----------------~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~--- 328 (572)
+..++-.++...+... |...++.+. ..+..+...+...+.... .-..|-+-+.++.
T Consensus 244 ~l~~l~~~Ll~k~~Dd----y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~ 319 (932)
T KOG2053|consen 244 ELFELSSRLLEKGNDD----YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYK 319 (932)
T ss_pred HHHHHHHHHHHhCCcc----hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhc
Confidence 8888888888876332 333222211 112222222222222211 1122333333333
Q ss_pred HcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchh-------HHHHHHHHhhhc
Q 046221 329 QNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS-------VQNCLISSYSKC 401 (572)
Q Consensus 329 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~ 401 (572)
.-|+.+++.-.|-+-. |..| .+..=+..|...=..+.-..++....... ++.. .+.+.+..-.-.
T Consensus 320 ~~gd~ee~~~~y~~kf---g~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~~--~~~s~~~k~l~~h~c~l~~~rl~ 391 (932)
T KOG2053|consen 320 LIGDSEEMLSYYFKKF---GDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLAD--DDSSGDEKVLQQHLCVLLLLRLL 391 (932)
T ss_pred ccCChHHHHHHHHHHh---CCCc---HhHhhHHHhhccCCHHHHHHHHHHhhccC--CcchhhHHHHHHHHHHHHHHHHh
Confidence 4477777665543322 2222 11111111111112222222222221110 0000 011122222222
Q ss_pred CC-----hHHHHHHHHHc------C------CCCCH---------hHHHHHHHHHHhcCChH---HHHHHHHHHHhcCCC
Q 046221 402 GN-----VDLAYIVFEEM------G------FLRDV---------VSWNTIIYGYGVNGHGE---TALALYHKMTETGEV 452 (572)
Q Consensus 402 g~-----~~~A~~~~~~~------~------~~~~~---------~~~~~l~~~~~~~~~~~---~A~~~~~~~~~~g~~ 452 (572)
|. -+.-..++.+. | .-|+. .+-+.|+..|.+.++.. +|+-+++.-... .
T Consensus 392 G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~--s 469 (932)
T KOG2053|consen 392 GLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTK--S 469 (932)
T ss_pred hccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhc--C
Confidence 21 22222333222 1 22332 23466778888888765 445555554442 3
Q ss_pred C-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC
Q 046221 453 P-DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 453 p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
| |..+-..+++.|+-.|-...|.++|+.+ .-..+..|..-|.. ...+...|++..+...++....
T Consensus 470 ~hnf~~KLlLiriY~~lGa~p~a~~~y~tL-dIK~IQ~DTlgh~~-~~~~~t~g~~~~~s~~~~~~lk 535 (932)
T KOG2053|consen 470 PHNFQTKLLLIRIYSYLGAFPDAYELYKTL-DIKNIQTDTLGHLI-FRRAETSGRSSFASNTFNEHLK 535 (932)
T ss_pred CccHHHHHHHHHHHHHhcCChhHHHHHHhc-chHHhhhccchHHH-HHHHHhcccchhHHHHHHHHHH
Confidence 4 4466667888999999999999999988 44446666544332 3455566777777777765543
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.10 E-value=0.00013 Score=58.76 Aligned_cols=88 Identities=15% Similarity=0.104 Sum_probs=44.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 046221 426 IIYGYGVNGHGETALALYHKMTETGEVPDS--STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLAR 503 (572)
Q Consensus 426 l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 503 (572)
+...+...|++++|...|+...+....|+. .....|...+...|++++|+..++.. ... ......+....++|.+
T Consensus 54 lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~--~~~~~~~~~~Gdi~~~ 130 (145)
T PF09976_consen 54 LAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDE--AFKALAAELLGDIYLA 130 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCc--chHHHHHHHHHHHHHH
Confidence 334455566666666666666654311211 22333445555666666666665443 122 1233344455556666
Q ss_pred hCChhHHHHHHHh
Q 046221 504 AGCLSDASGLAGK 516 (572)
Q Consensus 504 ~g~~~~A~~~~~~ 516 (572)
.|++++|...|++
T Consensus 131 ~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 131 QGDYDEARAAYQK 143 (145)
T ss_pred CCCHHHHHHHHHH
Confidence 6666666665554
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.05 E-value=0.00031 Score=56.62 Aligned_cols=125 Identities=11% Similarity=0.107 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCh--hHHHH
Q 046221 422 SWNTIIYGYGVNGHGETALALYHKMTETGEVPD---SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQ--EHYGC 496 (572)
Q Consensus 422 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~ 496 (572)
.|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+++.. ..|+. .....
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~ 90 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHH
Confidence 455555555 4788999999999999863 223 2344456677899999999999999998543 22222 24556
Q ss_pred HHHHHHhhCChhHHHHHHHhccC-CCChHHHHHHHHHHhhhcCCHHHHHHHHHHH
Q 046221 497 VVDLLARAGCLSDASGLAGKLLE-GMGPNIWRALLSGCVLHVGRFQDAEALRSGS 550 (572)
Q Consensus 497 l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~g~~~~A~~~~~~m 550 (572)
|..++...|++++|+..++.... ...+..+......+... |++++|...|++.
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~-g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQ-GDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHC-CCHHHHHHHHHHh
Confidence 78899999999999999988765 33333444444555555 9999999999864
No 146
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.04 E-value=4.9e-05 Score=70.94 Aligned_cols=124 Identities=15% Similarity=0.117 Sum_probs=103.1
Q ss_pred hhHHHHHhhcCChhhHHHHhccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHcCCCChH
Q 046221 9 SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLE 88 (572)
Q Consensus 9 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 88 (572)
..|+..+...++++.|+.+|+++.+.++.....++..+...++-.+|++++++..+.. +-+......-...|.+.++.+
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHH
Confidence 3466777788999999999999998778788888899988999999999999988652 345445555566677999999
Q ss_pred HHHHHHHHHHHhcCCCCcccCCCCCCceeHHHHHHHHHhCCChHHHHHHHHHHHh
Q 046221 89 LARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRG 143 (572)
Q Consensus 89 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 143 (572)
.|..+.+++....+ .+..+|..|..+|.+.|+++.|+-.++.+.-
T Consensus 252 lAL~iAk~av~lsP----------~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 252 LALEIAKKAVELSP----------SEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHHHHHHHhCc----------hhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 99999999998875 3456999999999999999999999988764
No 147
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.99 E-value=0.013 Score=53.78 Aligned_cols=122 Identities=16% Similarity=0.150 Sum_probs=94.3
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCC
Q 046221 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGL 470 (572)
Q Consensus 391 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 470 (572)
.+..+.-+...|+...|.++..+..+ |+...|...+.+++..+++++-...-.. +-++..|..++.+|.+.|.
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKV-PDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 34456667788999999999999999 9999999999999999999987765432 2234778899999999999
Q ss_pred hHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccCCCChHHHHHHHHHH
Q 046221 471 TNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGC 533 (572)
Q Consensus 471 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~ 533 (572)
..+|..+..++ + +..-+..|.++|++.+|.+.--+.. |......+...+
T Consensus 253 ~~eA~~yI~k~------~-----~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~~ 301 (319)
T PF04840_consen 253 KKEASKYIPKI------P-----DEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKRC 301 (319)
T ss_pred HHHHHHHHHhC------C-----hHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHHC
Confidence 99999988763 1 2445678899999999988876654 444555555444
No 148
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.99 E-value=2.8e-05 Score=55.75 Aligned_cols=48 Identities=15% Similarity=0.241 Sum_probs=21.3
Q ss_pred CChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHh
Q 046221 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK 516 (572)
Q Consensus 469 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 516 (572)
|+++.|+.+++++++.....++...+..+..+|.+.|++++|.+++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 445555555555544331111223333345555555555555555554
No 149
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.96 E-value=8.8e-05 Score=64.19 Aligned_cols=93 Identities=17% Similarity=0.161 Sum_probs=57.5
Q ss_pred hhhcCChHHHHHHHHHc-CCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHhccCChHHH
Q 046221 398 YSKCGNVDLAYIVFEEM-GFLR-DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS-STYLSILNACGHAGLTNDG 474 (572)
Q Consensus 398 ~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~a 474 (572)
+.+.+++.+|+..|.+. .+.| |.+.|..-..+|.+.|.++.|++-.+..+. +.|.. .+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHHH
Confidence 44566666666666666 3333 455555666666666666666666666666 55644 6666666666666666666
Q ss_pred HHHHHHhHHhcCCCCChhHHH
Q 046221 475 LVIFNQMIEENKVKPSQEHYG 495 (572)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~ 495 (572)
++.|+++++ +.|+-.+|.
T Consensus 169 ~~aykKaLe---ldP~Ne~~K 186 (304)
T KOG0553|consen 169 IEAYKKALE---LDPDNESYK 186 (304)
T ss_pred HHHHHhhhc---cCCCcHHHH
Confidence 666666653 455555443
No 150
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.89 E-value=0.00036 Score=54.14 Aligned_cols=96 Identities=11% Similarity=0.085 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-ChhHHHH
Q 046221 422 SWNTIIYGYGVNGHGETALALYHKMTETGEVPD----SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKP-SQEHYGC 496 (572)
Q Consensus 422 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~ 496 (572)
++-.+...+.+.|++++|...|+++.+. .|+ ...+..+..++.+.|++++|...|+.+++...-.+ ....+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 3445555666677777777777776653 232 23455566667777777777777776654331111 1345566
Q ss_pred HHHHHHhhCChhHHHHHHHhccC
Q 046221 497 VVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 497 l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
+..++.+.|++++|...++++..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHH
Confidence 66666677777777777776665
No 151
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.86 E-value=0.0002 Score=52.13 Aligned_cols=79 Identities=11% Similarity=0.057 Sum_probs=67.5
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhCCC-CCCHhhHHHHHHHHhccC--------ChHHHHHHHHHHHHhcCCCChhHHh
Q 046221 119 NAIVAGFINNKLFQQAVLLFNFFRGSGL-VPNAVTMLTVIRGCVALG--------SRALCELIHGLTIKLGLILDVSVNN 189 (572)
Q Consensus 119 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 189 (572)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ..-....+++.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456667777999999999999999999 999999999999977654 3445678899999999999999999
Q ss_pred HHHHHHHh
Q 046221 190 SVLDMYSC 197 (572)
Q Consensus 190 ~l~~~~~~ 197 (572)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99987765
No 152
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.84 E-value=0.00083 Score=60.79 Aligned_cols=127 Identities=10% Similarity=0.128 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 046221 422 SWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA-CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDL 500 (572)
Q Consensus 422 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 500 (572)
+|..++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|.++|+.+++.. +.+...|...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 34444444444444555555555554321 1122223222222 222334444555555554432 3344445555555
Q ss_pred HHhhCChhHHHHHHHhccC-CCCh----HHHHHHHHHHhhhcCCHHHHHHHHHHHHh
Q 046221 501 LARAGCLSDASGLAGKLLE-GMGP----NIWRALLSGCVLHVGRFQDAEALRSGSQK 552 (572)
Q Consensus 501 ~~~~g~~~~A~~~~~~~~~-~~~~----~~~~~l~~~~~~~~g~~~~A~~~~~~m~~ 552 (572)
+.+.|+.+.|..+|++... -+.. ..|...+.--... |+.+.+..+.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~-Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKY-GDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHH-S-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Confidence 5555555555555555544 1111 2444444444444 555555555554443
No 153
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.83 E-value=0.00076 Score=53.26 Aligned_cols=95 Identities=6% Similarity=-0.043 Sum_probs=72.2
Q ss_pred HHHHHhhhcCChHHHHHHHHHc-CCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccC
Q 046221 393 CLISSYSKCGNVDLAYIVFEEM-GFLR-DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNACGHAG 469 (572)
Q Consensus 393 ~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g 469 (572)
.+...+...|++++|.++|+.+ .+.| +..-|-.|..++...|++++|+..|...... .| |+.++..+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L--~~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI--KIDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCchHHHHHHHHHHHcC
Confidence 3555667788888888888887 3333 4566777888888888899999998888884 45 4588888888888889
Q ss_pred ChHHHHHHHHHhHHhcCCCC
Q 046221 470 LTNDGLVIFNQMIEENKVKP 489 (572)
Q Consensus 470 ~~~~a~~~~~~~~~~~~~~~ 489 (572)
+.+.|.+.|+.++...+-.|
T Consensus 118 ~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 118 NVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred CHHHHHHHHHHHHHHhccCh
Confidence 99999888888876554333
No 154
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.83 E-value=2.6e-05 Score=43.38 Aligned_cols=31 Identities=29% Similarity=0.589 Sum_probs=23.0
Q ss_pred hhHHHHHHHHhhCCChHHHHHHHHHHHHcCC
Q 046221 37 VSWSIVIHGYSINGFHEKSMKAFSHMMLSGL 67 (572)
Q Consensus 37 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 67 (572)
++|++++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677777777777777777777777777663
No 155
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=0.002 Score=54.45 Aligned_cols=190 Identities=14% Similarity=0.086 Sum_probs=137.4
Q ss_pred cccccHHHHHHHHHHHHHh---c-CCCch-hHHHHHHHHhhhcCChHHHHHHHHHc--CCCCCHhHHHHHHHHHHhcCCh
Q 046221 364 GELAALEICLQLHGIAFEA---G-FPRYR-SVQNCLISSYSKCGNVDLAYIVFEEM--GFLRDVVSWNTIIYGYGVNGHG 436 (572)
Q Consensus 364 ~~~~~~~~a~~~~~~~~~~---~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~ 436 (572)
....+.++..+++..+... | ..++. ..|..++-+....|+.+.|...++++ .++.+...-..-..-+-..|++
T Consensus 23 ~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 23 ETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhch
Confidence 4456788888888777643 3 33443 34556666777899999999999998 4422222222122234457899
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHh
Q 046221 437 ETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK 516 (572)
Q Consensus 437 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 516 (572)
++|+++|+.+++.. +.|..++.-=+...-..|+.-+|++-+.+.++. +..|...|.-+.+.|...|++++|.-.+++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 99999999999974 335688887777778889988999999998865 478999999999999999999999999999
Q ss_pred ccC-CCChH-HHHHHHHHHhhh--cCCHHHHHHHHHHHHhCCCC
Q 046221 517 LLE-GMGPN-IWRALLSGCVLH--VGRFQDAEALRSGSQKKGII 556 (572)
Q Consensus 517 ~~~-~~~~~-~~~~l~~~~~~~--~g~~~~A~~~~~~m~~~~~~ 556 (572)
+.- .|-.. .+..+...+... ..+.+-|.+++.+..+....
T Consensus 180 ~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~ 223 (289)
T KOG3060|consen 180 LLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPK 223 (289)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChH
Confidence 876 55444 444555554433 24566778888887776653
No 156
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.82 E-value=3e-05 Score=43.12 Aligned_cols=30 Identities=23% Similarity=0.589 Sum_probs=24.1
Q ss_pred eHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 046221 117 SCNAIVAGFINNKLFQQAVLLFNFFRGSGL 146 (572)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 146 (572)
+||.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 688888888888888888888888887663
No 157
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.81 E-value=0.00043 Score=53.67 Aligned_cols=100 Identities=14% Similarity=0.021 Sum_probs=78.2
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhhCChhHHHHHHHhccC-CCC----hHHHHHH
Q 046221 456 STYLSILNACGHAGLTNDGLVIFNQMIEENKVKP-SQEHYGCVVDLLARAGCLSDASGLAGKLLE-GMG----PNIWRAL 529 (572)
Q Consensus 456 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----~~~~~~l 529 (572)
.++..++..+.+.|++++|.+.|+.+++..+-.+ ....+..+..++.+.|++++|...++++.. .|+ +..+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 4566777888999999999999999986542111 134667789999999999999999999876 444 3456666
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHhCCCC
Q 046221 530 LSGCVLHVGRFQDAEALRSGSQKKGII 556 (572)
Q Consensus 530 ~~~~~~~~g~~~~A~~~~~~m~~~~~~ 556 (572)
...+... |++++|...++++.+..+.
T Consensus 83 ~~~~~~~-~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 83 GMSLQEL-GDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHHh-CChHHHHHHHHHHHHHCcC
Confidence 6666655 9999999999999988654
No 158
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.81 E-value=4.8e-05 Score=54.54 Aligned_cols=81 Identities=16% Similarity=0.241 Sum_probs=55.3
Q ss_pred cCChHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHH
Q 046221 433 NGHGETALALYHKMTETGE-VPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDAS 511 (572)
Q Consensus 433 ~~~~~~A~~~~~~~~~~g~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 511 (572)
.|+++.|+.+++++.+..- .|+...+..+..+|.+.|++++|+.+++. .+.. +.+......+..++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--PSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--HCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--CCCHHHHHHHHHHHHHhCCHHHHH
Confidence 5778888888888888532 12344555578888888888888888877 2322 123344555678888888888888
Q ss_pred HHHHh
Q 046221 512 GLAGK 516 (572)
Q Consensus 512 ~~~~~ 516 (572)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88875
No 159
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.80 E-value=0.0003 Score=51.92 Aligned_cols=92 Identities=21% Similarity=0.187 Sum_probs=50.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 046221 423 WNTIIYGYGVNGHGETALALYHKMTETGEVPD-SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLL 501 (572)
Q Consensus 423 ~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 501 (572)
+..+...+...|++++|...++++.+. .|+ ...+..+...+...|++++|.+.++..++.. +.+...+..+...+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~ 78 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--PDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CcchhHHHHHHHHH
Confidence 344455555666666666666666553 332 2445555555666666666666666654322 22334555555566
Q ss_pred HhhCChhHHHHHHHhcc
Q 046221 502 ARAGCLSDASGLAGKLL 518 (572)
Q Consensus 502 ~~~g~~~~A~~~~~~~~ 518 (572)
...|++++|...+.+..
T Consensus 79 ~~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 79 YKLGKYEEALEAYEKAL 95 (100)
T ss_pred HHHHhHHHHHHHHHHHH
Confidence 66666666666655543
No 160
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.78 E-value=0.00034 Score=51.57 Aligned_cols=91 Identities=15% Similarity=0.143 Sum_probs=48.0
Q ss_pred HHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC--CCChHHHHHHHHHHhhh
Q 046221 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE--GMGPNIWRALLSGCVLH 536 (572)
Q Consensus 459 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~ 536 (572)
..+...+...|++++|..+++++++.. +.+...+..+..++...|++++|.+.+++... +.+..++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 344445555666666666666654322 22334455555566666666666666665544 22333444444444444
Q ss_pred cCCHHHHHHHHHHHHh
Q 046221 537 VGRFQDAEALRSGSQK 552 (572)
Q Consensus 537 ~g~~~~A~~~~~~m~~ 552 (572)
|++++|...+++..+
T Consensus 82 -~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 -GKYEEALEAYEKALE 96 (100)
T ss_pred -HhHHHHHHHHHHHHc
Confidence 666666666655543
No 161
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.77 E-value=0.0038 Score=56.81 Aligned_cols=136 Identities=10% Similarity=0.079 Sum_probs=76.3
Q ss_pred HHHHHhhhc-CChHHHHHHHHHc-----CC-CCC--HhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-----CH-HH
Q 046221 393 CLISSYSKC-GNVDLAYIVFEEM-----GF-LRD--VVSWNTIIYGYGVNGHGETALALYHKMTETGEVP-----DS-ST 457 (572)
Q Consensus 393 ~l~~~~~~~-g~~~~A~~~~~~~-----~~-~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-----~~-~~ 457 (572)
.+...|... |++++|.+.|++. .. .+. ...+..+...+.+.|++++|..+|++....-... +. ..
T Consensus 119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 345566666 7888888777766 11 121 3345566777888889999999998887643221 22 12
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhHHhc-CCCCCh--hHHHHHHHHHHh--hCChhHHHHHHHhccCCCChHHHHHH
Q 046221 458 YLSILNACGHAGLTNDGLVIFNQMIEEN-KVKPSQ--EHYGCVVDLLAR--AGCLSDASGLAGKLLEGMGPNIWRAL 529 (572)
Q Consensus 458 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~--~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~l 529 (572)
|...+-++...|++..|.+.+++..... ++..+. .....|+.++-. ...+.+|..-|+.+. +.|+.--..|
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~-~ld~w~~~~l 274 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS-RLDNWKTKML 274 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS----HHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC-ccHHHHHHHH
Confidence 3334445667788888888888875332 233332 256677777743 224556666666665 4444433333
No 162
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.76 E-value=0.00051 Score=64.56 Aligned_cols=103 Identities=17% Similarity=0.112 Sum_probs=66.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhC
Q 046221 427 IYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAG 505 (572)
Q Consensus 427 ~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 505 (572)
...+...|+++.|+..|+++++. .| +...|..+..+|...|++++|+..++++++.. +.+...|..+..+|...|
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhC
Confidence 34455667777777777777763 44 34666666777777777777777777776533 334556667777777777
Q ss_pred ChhHHHHHHHhccC-CCChHHHHHHHHHH
Q 046221 506 CLSDASGLAGKLLE-GMGPNIWRALLSGC 533 (572)
Q Consensus 506 ~~~~A~~~~~~~~~-~~~~~~~~~l~~~~ 533 (572)
++++|...|+++.. .|+.......+..|
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 77777777777766 55544444444444
No 163
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.76 E-value=0.0007 Score=63.66 Aligned_cols=122 Identities=16% Similarity=0.138 Sum_probs=85.6
Q ss_pred CCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHh--cCCCchhHHHHHHHHhhhcCChHHHHHHHHHc---CCCCCHh
Q 046221 347 KTDSVDSITLVSILTASGELAALEICLQLHGIAFEA--GFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM---GFLRDVV 421 (572)
Q Consensus 347 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~ 421 (572)
.+.+.+...+..++..+....+++.+..++-+.... ....-..+..++++.|.+.|..+.++.+++.= |+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 445566777777777777777777777776666544 22222334457888888888888888887754 7778888
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhcc
Q 046221 422 SWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468 (572)
Q Consensus 422 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 468 (572)
++|.|+..+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888888877777766666666666655555444
No 164
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.75 E-value=0.00029 Score=66.17 Aligned_cols=127 Identities=9% Similarity=-0.046 Sum_probs=98.8
Q ss_pred cCCCCCcchHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCcccCCCCCCceeHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 046221 65 SGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGS 144 (572)
Q Consensus 65 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 144 (572)
.+.+.+......++..+....+++.+..++-......-... --..+.+++++.|...|..+.++++++.=...
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~-------~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~y 132 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSY-------LLPSTHHALVRQCLELGAEDELLELLKNRLQY 132 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCccccc-------ccCccHHHHHHHHHhcCCHHHHHHHHhChhhc
Confidence 34466777788888888888888888888777766532211 11224568999999999999999999888888
Q ss_pred CCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHHHHHHhC
Q 046221 145 GLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCL 198 (572)
Q Consensus 145 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (572)
|+-||..|++.+|..+.+.|++..|.++...|..++...+..|+..-+.+|.+.
T Consensus 133 GiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 133 GIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred ccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999999999998888888777777776666666655
No 165
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.74 E-value=0.0038 Score=50.11 Aligned_cols=123 Identities=16% Similarity=0.140 Sum_probs=67.8
Q ss_pred CCchhHHHHHHHHhhhcCChHHHHHHHHHc--C-CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC---HHHH
Q 046221 385 PRYRSVQNCLISSYSKCGNVDLAYIVFEEM--G-FLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD---SSTY 458 (572)
Q Consensus 385 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~---~~~~ 458 (572)
.|+...--.|..++.+.|+..+|...|++. | ..-|....-.+.++....+++..|...++++-+.. |+ ..+.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCch
Confidence 455554455666666666666666666665 2 23345555555666666666666666666665532 31 2233
Q ss_pred HHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHH
Q 046221 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASG 512 (572)
Q Consensus 459 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 512 (572)
..+.+.+...|++.+|..-|+.++.. -|+...-.-....+.++|+..+|..
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~---ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY---YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh---CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 44555666666666666666666532 2444444444455556665555443
No 166
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.73 E-value=0.00017 Score=49.17 Aligned_cols=62 Identities=16% Similarity=0.268 Sum_probs=39.6
Q ss_pred ccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC-CCChHHHHHHH
Q 046221 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE-GMGPNIWRALL 530 (572)
Q Consensus 467 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~ 530 (572)
..|++++|+++|+++++.. +-+...+..++.+|.+.|++++|.++++++.. .|+...|..++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 4567777777777776544 34555666677777777777777777777766 55544444443
No 167
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.69 E-value=0.00043 Score=57.33 Aligned_cols=127 Identities=13% Similarity=0.113 Sum_probs=88.9
Q ss_pred hhHHHHhccC--CCCChhhHHHHHHHHhh-----CCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHcCCCChHHHHHHH
Q 046221 22 KEAENLFDEI--PEKNVVSWSIVIHGYSI-----NGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIH 94 (572)
Q Consensus 22 ~~A~~~~~~~--~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 94 (572)
..-...|++. ...+-.+|..++..|.+ .|+.+-....+..|.+-|+.-|..+|+.||..+=+ |.+- -..+|
T Consensus 31 ~~~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~f 108 (228)
T PF06239_consen 31 APHEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFF 108 (228)
T ss_pred cchHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHH
Confidence 3445566665 45788899999988764 47888888889999999999999999999998864 3321 11111
Q ss_pred HHHHHhcCCCCcccCCCCCCceeHHHHHHHHHh-CCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCC-hHHHHHH
Q 046221 95 GLMVKFGLESDLFEGLKNPYLVSCNAIVAGFIN-NKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS-RALCELI 172 (572)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~ 172 (572)
+. .+.. -.+-+-|++++++|...|+.||..|+..+++.+++.+. ..+..++
T Consensus 109 Q~---------------------------~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rm 161 (228)
T PF06239_consen 109 QA---------------------------EFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRM 161 (228)
T ss_pred HH---------------------------HhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHH
Confidence 11 1111 23557789999999999999999999999999987663 2334444
Q ss_pred HHHHH
Q 046221 173 HGLTI 177 (572)
Q Consensus 173 ~~~~~ 177 (572)
.=+|-
T Consensus 162 mYWmp 166 (228)
T PF06239_consen 162 MYWMP 166 (228)
T ss_pred HHHHH
Confidence 43443
No 168
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.67 E-value=0.025 Score=54.62 Aligned_cols=253 Identities=11% Similarity=0.049 Sum_probs=124.7
Q ss_pred cHHHHHHHHHccCCHHHHHHHH---------HHHHhCCCCCCccchHHHHHHhcccCChH--HHHHHHHHHHHhCCCCCc
Q 046221 218 SWTRMMGLFVDFEYAGDALKIF---------REMRKSRIICDTVALLNLISVNAILGDLK--RGKQLHAQVVLGGLQSEL 286 (572)
Q Consensus 218 ~~~~li~~~~~~~~~~~a~~~~---------~~m~~~~~~p~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~ 286 (572)
.+.+-+-.|...|.+++|.++- +.+... ..+.-.++..=++|.+..+.. +...-++++.+.|-.|+.
T Consensus 558 p~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~ 635 (1081)
T KOG1538|consen 558 PQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPND 635 (1081)
T ss_pred cccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchH
Confidence 4455556666777777665431 111110 122333444445555544433 233445566667766766
Q ss_pred chHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhccc
Q 046221 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGEL 366 (572)
Q Consensus 287 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 366 (572)
.. +...++-.|++.+|.++|.+- |.-..|+++|..|. ..-...-+...
T Consensus 636 iL---lA~~~Ay~gKF~EAAklFk~~------------------G~enRAlEmyTDlR-----------MFD~aQE~~~~ 683 (1081)
T KOG1538|consen 636 LL---LADVFAYQGKFHEAAKLFKRS------------------GHENRALEMYTDLR-----------MFDYAQEFLGS 683 (1081)
T ss_pred HH---HHHHHHhhhhHHHHHHHHHHc------------------CchhhHHHHHHHHH-----------HHHHHHHHhhc
Confidence 43 445566778888888877643 44445555554443 11112222233
Q ss_pred ccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc---------CCC---CCHhHHHHHHHHHHhcC
Q 046221 367 AALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM---------GFL---RDVVSWNTIIYGYGVNG 434 (572)
Q Consensus 367 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~---~~~~~~~~l~~~~~~~~ 434 (572)
|..++-..+.++-.+. ..+..--.+-.+++...|+..+|..+.-+- +-+ .+..+...+..-+.+..
T Consensus 684 g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~ 761 (1081)
T KOG1538|consen 684 GDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLD 761 (1081)
T ss_pred CChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhcc
Confidence 3333322222211110 001111122344555666666665554322 111 23334444444455566
Q ss_pred ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhH-----------HHHHHHHHHh
Q 046221 435 HGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEH-----------YGCVVDLLAR 503 (572)
Q Consensus 435 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-----------~~~l~~~~~~ 503 (572)
.+.-|-++|.+|-+. ..+++.+...++|++|..+-+..- .+.||+.. |.-.-++|.+
T Consensus 762 ~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hP---e~~~dVy~pyaqwLAE~DrFeEAqkAfhk 829 (1081)
T KOG1538|consen 762 SPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHP---EFKDDVYMPYAQWLAENDRFEEAQKAFHK 829 (1081)
T ss_pred ccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCc---cccccccchHHHHhhhhhhHHHHHHHHHH
Confidence 677777888776552 356777888888988888776442 23455431 1112235555
Q ss_pred hCChhHHHHHHHhcc
Q 046221 504 AGCLSDASGLAGKLL 518 (572)
Q Consensus 504 ~g~~~~A~~~~~~~~ 518 (572)
.|+..+|.++++++.
T Consensus 830 AGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 830 AGRQREAVQVLEQLT 844 (1081)
T ss_pred hcchHHHHHHHHHhh
Confidence 555556665555554
No 169
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.64 E-value=0.046 Score=49.62 Aligned_cols=285 Identities=16% Similarity=0.091 Sum_probs=161.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCccchHHHHHHhc--ccCChHHHHHHHHHHHHhCCCCCcch--HHHHHHHHHhcCChhHH
Q 046221 230 EYAGDALKIFREMRKSRIICDTVALLNLISVNA--ILGDLKRGKQLHAQVVLGGLQSELRL--SNSIIAMYSKCGDLDSS 305 (572)
Q Consensus 230 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a 305 (572)
|+-..|.++-.+..+. +..|......++.+-. -.|+.+.|.+-|+.|... |.... ...|.-.--+.|+.+.|
T Consensus 98 Gda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 98 GDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred CchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 4444444443333221 3334444444444332 236666666666666531 11111 11222223455777777
Q ss_pred HHHHhccCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHh--HHHHHHHHhcc---cccHHHHHHHHH
Q 046221 306 RSVFNQITEK---SLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSI--TLVSILTASGE---LAALEICLQLHG 377 (572)
Q Consensus 306 ~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~ll~~~~~---~~~~~~a~~~~~ 377 (572)
..+-+..-.. -...+...+...+..|+++.|+++++.-....-+.++.. .-..++.+-.. ..+...|...-.
T Consensus 174 r~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~ 253 (531)
T COG3898 174 RHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDAL 253 (531)
T ss_pred HHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 6666655432 124667778888888888888888887764444555543 22223322211 123334444333
Q ss_pred HHHHhcCCCchhHH-HHHHHHhhhcCChHHHHHHHHHc-CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCC
Q 046221 378 IAFEAGFPRYRSVQ-NCLISSYSKCGNVDLAYIVFEEM-GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET-GEVPD 454 (572)
Q Consensus 378 ~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-g~~p~ 454 (572)
+.. .+.|+..-- -.-..++.+.|+..++-.+++.+ ...|.+..+... .+.+.|+ .++.-+++.... .++||
T Consensus 254 ~a~--KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY--~~ar~gd--ta~dRlkRa~~L~slk~n 327 (531)
T COG3898 254 EAN--KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLY--VRARSGD--TALDRLKRAKKLESLKPN 327 (531)
T ss_pred HHh--hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHH--HHhcCCC--cHHHHHHHHHHHHhcCcc
Confidence 322 334443221 22346788999999999999998 555766655332 2344454 344444443321 25675
Q ss_pred H-HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh-hCChhHHHHHHHhccCCCChHHHH
Q 046221 455 S-STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLAR-AGCLSDASGLAGKLLEGMGPNIWR 527 (572)
Q Consensus 455 ~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~ 527 (572)
. .....+..+....|++..|..--+.+.+ ..|....|..|.+.-.- .||-.++..++.+....|....|.
T Consensus 328 naes~~~va~aAlda~e~~~ARa~Aeaa~r---~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW~ 399 (531)
T COG3898 328 NAESSLAVAEAALDAGEFSAARAKAEAAAR---EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPAWT 399 (531)
T ss_pred chHHHHHHHHHHHhccchHHHHHHHHHHhh---hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCccc
Confidence 5 7777788888889999888877766643 46888888888776544 499999999999887744443443
No 170
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.63 E-value=0.0019 Score=53.78 Aligned_cols=83 Identities=16% Similarity=0.159 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 046221 422 SWNTIIYGYGVNGHGETALALYHKMTETGEVPD--SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVD 499 (572)
Q Consensus 422 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 499 (572)
.+..+...+...|++++|...|++..+.+..+. ...+..+...+.+.|++++|...++++++.. +-+...+..+..
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~ 114 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--PKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHH
Confidence 344445555555666666666665554321111 2345555555666666666666666655432 223334444555
Q ss_pred HHHhhCC
Q 046221 500 LLARAGC 506 (572)
Q Consensus 500 ~~~~~g~ 506 (572)
++...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 5555444
No 171
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.59 E-value=0.00078 Score=49.16 Aligned_cols=79 Identities=9% Similarity=0.049 Sum_probs=66.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCC-CCCccchHHHHHHhcccC--------ChHHHHHHHHHHHHhCCCCCcchHH
Q 046221 220 TRMMGLFVDFEYAGDALKIFREMRKSRI-ICDTVALLNLISVNAILG--------DLKRGKQLHAQVVLGGLQSELRLSN 290 (572)
Q Consensus 220 ~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 290 (572)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+.....+|+.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456666677999999999999999999 899999999999886653 2445788999999999999999999
Q ss_pred HHHHHHHh
Q 046221 291 SIIAMYSK 298 (572)
Q Consensus 291 ~l~~~~~~ 298 (572)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99988765
No 172
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.59 E-value=0.001 Score=60.19 Aligned_cols=126 Identities=10% Similarity=-0.025 Sum_probs=59.7
Q ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhh-cCChHHHHHHHHHc--CCCCCHhHHHHHHHHHH
Q 046221 355 TLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK-CGNVDLAYIVFEEM--GFLRDVVSWNTIIYGYG 431 (572)
Q Consensus 355 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~ 431 (572)
.|..++...-+.+..+.|..+|..+.+.+ ..+..+|-.....-.+ .++.+.|.++|+.. ....+...|...+..+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 44555555555555666666665554221 2233333333333222 34444455555555 33334445555555555
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHhccCChHHHHHHHHHhH
Q 046221 432 VNGHGETALALYHKMTETGEVPDS---STYLSILNACGHAGLTNDGLVIFNQMI 482 (572)
Q Consensus 432 ~~~~~~~A~~~~~~~~~~g~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~ 482 (572)
+.|+.+.|..+|++.... +.++. ..|...+.-=.+.|+.+.+.++.+++.
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~ 134 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAE 134 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555566666555543 22221 245555555555555555555555554
No 173
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.59 E-value=0.0017 Score=53.97 Aligned_cols=95 Identities=15% Similarity=0.040 Sum_probs=55.8
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHH
Q 046221 420 VVSWNTIIYGYGVNGHGETALALYHKMTETGEVP--DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCV 497 (572)
Q Consensus 420 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 497 (572)
...|..+...+...|++++|+..|++.......| ...++..+...+...|++++|+..++.+++.. +.....+..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~--~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN--PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHH
Confidence 3445555666666777777777777776532222 12456667777777777777777777776432 2233345555
Q ss_pred HHHHH-------hhCChhHHHHHHHh
Q 046221 498 VDLLA-------RAGCLSDASGLAGK 516 (572)
Q Consensus 498 ~~~~~-------~~g~~~~A~~~~~~ 516 (572)
...+. +.|++++|...+++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 55555 66666655444443
No 174
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.54 E-value=0.0032 Score=49.83 Aligned_cols=95 Identities=6% Similarity=-0.035 Sum_probs=78.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 046221 421 VSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS-STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVD 499 (572)
Q Consensus 421 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 499 (572)
...-.+..-+...|++++|.++|+-+.. +.|.. .-|..|..+|-..|++.+|+..|..+..-. +-|+..+-.+..
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~--~ddp~~~~~ag~ 111 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK--IDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchHHHHHHH
Confidence 3334455567789999999999999888 67755 667778888999999999999999997443 456778888999
Q ss_pred HHHhhCChhHHHHHHHhccC
Q 046221 500 LLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 500 ~~~~~g~~~~A~~~~~~~~~ 519 (572)
++...|+.+.|.+.|+....
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999998765
No 175
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.53 E-value=0.023 Score=54.88 Aligned_cols=260 Identities=13% Similarity=0.101 Sum_probs=126.8
Q ss_pred hhhHHHHHhhcCChhhHHHHhccCCC-----------CChhhHHHHHHHHhhCCC--hHHHHHHHHHHHHcCCCCCcchH
Q 046221 8 SSKLLSNYFKSGKIKEAENLFDEIPE-----------KNVVSWSIVIHGYSINGF--HEKSMKAFSHMMLSGLLPNSFTM 74 (572)
Q Consensus 8 ~~~l~~~~~~~~~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~ 74 (572)
+..=+-.|...|.+++|.++----.- .+.-.++..=.+|.+-++ +-+.+.-+++|.++|-.|+...
T Consensus 559 ~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL- 637 (1081)
T KOG1538|consen 559 QSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLL- 637 (1081)
T ss_pred ccccchhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH-
Confidence 34445567777888877765321111 122334444556655543 3344555666777776676543
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHHHhcCCCCcccCCCCCCceeHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHH
Q 046221 75 VGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTML 154 (572)
Q Consensus 75 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 154 (572)
+...|+-.|++.+|.++| .++|.-..|+++|.+|+--
T Consensus 638 --lA~~~Ay~gKF~EAAklF-------------------------------k~~G~enRAlEmyTDlRMF---------- 674 (1081)
T KOG1538|consen 638 --LADVFAYQGKFHEAAKLF-------------------------------KRSGHENRALEMYTDLRMF---------- 674 (1081)
T ss_pred --HHHHHHhhhhHHHHHHHH-------------------------------HHcCchhhHHHHHHHHHHH----------
Confidence 234455667777766553 3455556666666655421
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHccCCHHH
Q 046221 155 TVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGD 234 (572)
Q Consensus 155 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 234 (572)
-..+-+...|+.++-..+.+.--+.. .+..--.+....+...|+.++|..+. ..+|-.+-
T Consensus 675 D~aQE~~~~g~~~eKKmL~RKRA~WA--r~~kePkaAAEmLiSaGe~~KAi~i~------------------~d~gW~d~ 734 (1081)
T KOG1538|consen 675 DYAQEFLGSGDPKEKKMLIRKRADWA--RNIKEPKAAAEMLISAGEHVKAIEIC------------------GDHGWVDM 734 (1081)
T ss_pred HHHHHHhhcCChHHHHHHHHHHHHHh--hhcCCcHHHHHHhhcccchhhhhhhh------------------hcccHHHH
Confidence 12233344444444333333221110 00000012233344455555554432 22222333
Q ss_pred HHHHHHHHHhCCCCCCccchHHHHHHhcccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHHHHHHhccCC
Q 046221 235 ALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE 314 (572)
Q Consensus 235 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 314 (572)
+.++-+++.. .+..+...+...+.+...+..|-++|..|-.. ..++......+++++|..+-++.++
T Consensus 735 lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 735 LIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred HHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 3333332221 22333444444444555556666666655432 3456666677777777777776664
Q ss_pred --CCcc-----------hHHHHHHHHHHcCChHHHHHHHHHHH
Q 046221 315 --KSLV-----------SWTAIISGYVQNGCAREALNQFIKMR 344 (572)
Q Consensus 315 --~~~~-----------~~~~l~~~~~~~~~~~~a~~~~~~~~ 344 (572)
+++. -+...-.+|.+.|+..+|.++++++.
T Consensus 802 ~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 802 FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 2221 11122345566677777777777764
No 176
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.51 E-value=0.0028 Score=52.65 Aligned_cols=87 Identities=23% Similarity=0.336 Sum_probs=58.1
Q ss_pred CCHhHHHHHHHHHHh-----cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhcc----------------CChHHHHH
Q 046221 418 RDVVSWNTIIYGYGV-----NGHGETALALYHKMTETGEVPDSSTYLSILNACGHA----------------GLTNDGLV 476 (572)
Q Consensus 418 ~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~----------------g~~~~a~~ 476 (572)
.+..+|..++..|.+ .|..+-....+..|.+-|+.-|..+|+.|++.+=+. .+-+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 455555555555543 244555556666666666666666666666654321 23456888
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhhC
Q 046221 477 IFNQMIEENKVKPSQEHYGCVVDLLARAG 505 (572)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 505 (572)
++++| +.+|+-||.+++..|++.+.+.+
T Consensus 125 lL~qM-E~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 125 LLEQM-ENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHH-HHcCCCCcHHHHHHHHHHhcccc
Confidence 89999 78889999999999998886555
No 177
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.042 Score=50.28 Aligned_cols=330 Identities=10% Similarity=-0.017 Sum_probs=165.1
Q ss_pred HHHHhCCCHHHHHHHHhhcCC--C-CcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-ccchHHHHHHhcccCChH
Q 046221 193 DMYSCLMDLDAAIQIFREMEC--K-DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICD-TVALLNLISVNAILGDLK 268 (572)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~ 268 (572)
..+.+..++.+|+..+....+ | +..-|..-+..+...++++++.--.+.-.+. .|. .......-.++...++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHHHH
Confidence 345555566666666665544 2 3444555555666666666666555444332 221 223334444444444555
Q ss_pred HHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHHHHHHhccCC-----CCcchHHHH-HHHHHHcCChHHHHHHHHH
Q 046221 269 RGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE-----KSLVSWTAI-ISGYVQNGCAREALNQFIK 342 (572)
Q Consensus 269 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l-~~~~~~~~~~~~a~~~~~~ 342 (572)
+|.+.++.-. .+ ....+...++.+.. |....|..+ ..++.-.|++++|...-..
T Consensus 135 ~A~~~~~~~~---------~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ 194 (486)
T KOG0550|consen 135 EAEEKLKSKQ---------AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAID 194 (486)
T ss_pred HHHHHhhhhh---------hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHH
Confidence 5544444111 00 01111111222211 111222222 2345556666666665555
Q ss_pred HHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhH-------------HHHHHHHhhhcCChHHHHH
Q 046221 343 MRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSV-------------QNCLISSYSKCGNVDLAYI 409 (572)
Q Consensus 343 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~g~~~~A~~ 409 (572)
+.+......+....+ -.++...++.+.+..-|++.++.+ |+... +..-.+-..+.|++..|.+
T Consensus 195 ilkld~~n~~al~vr--g~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E 270 (486)
T KOG0550|consen 195 ILKLDATNAEALYVR--GLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYE 270 (486)
T ss_pred HHhcccchhHHHHhc--ccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHH
Confidence 542222211111111 112233455556665555544332 22111 1111234567899999999
Q ss_pred HHHHc-CCC-----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHhH
Q 046221 410 VFEEM-GFL-----RDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS-STYLSILNACGHAGLTNDGLVIFNQMI 482 (572)
Q Consensus 410 ~~~~~-~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~ 482 (572)
.+.+. ++. |+...|.....+..+.|+..+|+.-.++..+ +.|.. ..|..-..++...++|++|.+-++.++
T Consensus 271 ~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 271 CYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALEKWEEAVEDYEKAM 348 (486)
T ss_pred HHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988 444 4555666677778889999999999988887 45543 555556667888899999999999887
Q ss_pred HhcCCCCChhHHHHHHHHHHhh--CChhHHHHHHHhccCCCChHHHHHHHHHHh--hhcCCHHHHHHHHHHH
Q 046221 483 EENKVKPSQEHYGCVVDLLARA--GCLSDASGLAGKLLEGMGPNIWRALLSGCV--LHVGRFQDAEALRSGS 550 (572)
Q Consensus 483 ~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~--~~~g~~~~A~~~~~~m 550 (572)
+...-.-...++.-...++-+. .++-.-+-+.......+.-..|.-+.-..+ .+.|.-.+|...|.+.
T Consensus 349 q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkev 420 (486)
T KOG0550|consen 349 QLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEV 420 (486)
T ss_pred hhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHH
Confidence 5442222233444444444322 233344444444433444445543322221 2234444555444443
No 178
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.50 E-value=0.0019 Score=63.47 Aligned_cols=143 Identities=13% Similarity=0.006 Sum_probs=92.0
Q ss_pred cCCCchhHHHHHHHHhhhc-----CChHHHHHHHHHc-CCCCC-HhHHHHHHHHHHhcC--------ChHHHHHHHHHHH
Q 046221 383 GFPRYRSVQNCLISSYSKC-----GNVDLAYIVFEEM-GFLRD-VVSWNTIIYGYGVNG--------HGETALALYHKMT 447 (572)
Q Consensus 383 ~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~--------~~~~A~~~~~~~~ 447 (572)
..+.+...|..++++.... ++.+.|..+|++. ...|+ ...|..+..++.... +...+.+...+..
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 4567778888888775432 2367888888887 55565 445555544443221 1223333344333
Q ss_pred hcC-CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC-CCChHH
Q 046221 448 ETG-EVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE-GMGPNI 525 (572)
Q Consensus 448 ~~g-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~ 525 (572)
... ...+...|..+.-.+...|++++|...++++++. .|+...|..+..++...|+.++|.+.++++.. .|...+
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L---~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL---EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 321 2234566777766666778888888888888753 46777888888888888888888888888776 666666
Q ss_pred HHH
Q 046221 526 WRA 528 (572)
Q Consensus 526 ~~~ 528 (572)
|..
T Consensus 489 ~~~ 491 (517)
T PRK10153 489 LYW 491 (517)
T ss_pred HHH
Confidence 543
No 179
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.46 E-value=0.0049 Score=46.98 Aligned_cols=93 Identities=15% Similarity=0.180 Sum_probs=63.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHH
Q 046221 426 IIYGYGVNGHGETALALYHKMTETGEVPDS--STYLSILNACGHAGLTNDGLVIFNQMIEENKVKP-SQEHYGCVVDLLA 502 (572)
Q Consensus 426 l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 502 (572)
+..++-..|+.++|+.+|++....|+.... ..+..+..++...|++++|+.++++.++..+-.+ +......+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 345666788888888888888888766643 5666777788888888888888888875431111 1222233344667
Q ss_pred hhCChhHHHHHHHhcc
Q 046221 503 RAGCLSDASGLAGKLL 518 (572)
Q Consensus 503 ~~g~~~~A~~~~~~~~ 518 (572)
..|+.++|.+.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 8888888887776544
No 180
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.43 E-value=0.0022 Score=55.88 Aligned_cols=99 Identities=21% Similarity=0.157 Sum_probs=77.8
Q ss_pred HhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc-CCCCC-HhHHHHHHHHHHhcCChHHH
Q 046221 362 ASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFLRD-VVSWNTIIYGYGVNGHGETA 439 (572)
Q Consensus 362 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A 439 (572)
-..+.+++++|...|...++.. +-+...|..-..+|.+.|.++.|++-.+.. .+.|. ..+|..|..+|...|++++|
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 4567788888888888888764 556677777888888999988888888777 55454 67888888888888999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHH
Q 046221 440 LALYHKMTETGEVPDSSTYLSILN 463 (572)
Q Consensus 440 ~~~~~~~~~~g~~p~~~~~~~l~~ 463 (572)
++.|++.++ +.|+..+|..=+.
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHHHHH
Confidence 988888888 7888777765444
No 181
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.43 E-value=0.0083 Score=59.15 Aligned_cols=74 Identities=9% Similarity=0.029 Sum_probs=60.3
Q ss_pred CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHH
Q 046221 416 FLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY 494 (572)
Q Consensus 416 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 494 (572)
...+...|..+.......|++++|...++++.+ +.|+...|..+...+...|+.++|.+.++++++.. |...+|
T Consensus 416 ~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~---P~~pt~ 489 (517)
T PRK10153 416 LNVLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR---PGENTL 489 (517)
T ss_pred CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCchH
Confidence 334557787776677778999999999999999 56888999999999999999999999999987644 554444
No 182
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.41 E-value=0.0036 Score=52.19 Aligned_cols=99 Identities=12% Similarity=0.032 Sum_probs=72.7
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhhCChhHHHHHHHhccC-CC-ChHHHHHHHHH
Q 046221 456 STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPS-QEHYGCVVDLLARAGCLSDASGLAGKLLE-GM-GPNIWRALLSG 532 (572)
Q Consensus 456 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~ 532 (572)
..+..+...+...|++++|...|+++++...-+++ ...+..+..++.+.|++++|...++++.. .| +...+..+...
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 56777888899999999999999999854322222 35788899999999999999999999887 44 34455555555
Q ss_pred HhhhcCC--------------HHHHHHHHHHHHhCCC
Q 046221 533 CVLHVGR--------------FQDAEALRSGSQKKGI 555 (572)
Q Consensus 533 ~~~~~g~--------------~~~A~~~~~~m~~~~~ 555 (572)
+... |+ +++|.+++++..+.+.
T Consensus 116 ~~~~-g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p 151 (172)
T PRK02603 116 YHKR-GEKAEEAGDQDEAEALFDKAAEYWKQAIRLAP 151 (172)
T ss_pred HHHc-CChHhHhhCHHHHHHHHHHHHHHHHHHHhhCc
Confidence 5443 55 4667777777666553
No 183
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.40 E-value=0.0038 Score=56.81 Aligned_cols=23 Identities=13% Similarity=0.339 Sum_probs=10.3
Q ss_pred HHHHHHHhccCChHHHHHHHHHh
Q 046221 459 LSILNACGHAGLTNDGLVIFNQM 481 (572)
Q Consensus 459 ~~l~~~~~~~g~~~~a~~~~~~~ 481 (572)
..+...+.+.|++++|+++|+++
T Consensus 159 ~~~A~l~~~l~~y~~A~~~~e~~ 181 (282)
T PF14938_consen 159 LKAADLYARLGRYEEAIEIYEEV 181 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH
Confidence 33444444444555555555444
No 184
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.39 E-value=0.0022 Score=60.41 Aligned_cols=91 Identities=14% Similarity=0.092 Sum_probs=75.2
Q ss_pred HHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC-CC-ChHHHHHHHHHHhhhcCC
Q 046221 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE-GM-GPNIWRALLSGCVLHVGR 539 (572)
Q Consensus 462 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~g~ 539 (572)
...+...|++++|+..|+++++.. +-+...|..+..+|.+.|++++|+..++++.. .| +...|..+..++... |+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l-g~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL-EE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh-CC
Confidence 456778899999999999998754 45667888899999999999999999999987 44 556677777777666 99
Q ss_pred HHHHHHHHHHHHhCCC
Q 046221 540 FQDAEALRSGSQKKGI 555 (572)
Q Consensus 540 ~~~A~~~~~~m~~~~~ 555 (572)
+++|+..|++..+...
T Consensus 86 ~~eA~~~~~~al~l~P 101 (356)
T PLN03088 86 YQTAKAALEKGASLAP 101 (356)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 9999999999876554
No 185
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.35 E-value=0.00067 Score=46.36 Aligned_cols=61 Identities=20% Similarity=0.285 Sum_probs=32.2
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHhccC-ChHHHHHHHHHhH
Q 046221 420 VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS-STYLSILNACGHAG-LTNDGLVIFNQMI 482 (572)
Q Consensus 420 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g-~~~~a~~~~~~~~ 482 (572)
...|..+...+...|++++|+..|++..+. .|+. ..|..+..++...| ++++|++.+++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 344555555555555555555555555552 3432 44555555555555 4555555555554
No 186
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.34 E-value=0.004 Score=47.46 Aligned_cols=91 Identities=14% Similarity=0.158 Sum_probs=68.0
Q ss_pred HHHHHHhccCChHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhhCChhHHHHHHHhccC-CCC---hHHHHHHHHHH
Q 046221 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPS--QEHYGCVVDLLARAGCLSDASGLAGKLLE-GMG---PNIWRALLSGC 533 (572)
Q Consensus 460 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~---~~~~~~l~~~~ 533 (572)
.+..++-..|+.++|+.+|++.++ .|.... ...+-.+...+...|++++|..++++... .|+ ...........
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~-~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALA-AGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHH
Confidence 456678899999999999999974 566544 33677788899999999999999999877 465 33333333333
Q ss_pred hhhcCCHHHHHHHHHHHH
Q 046221 534 VLHVGRFQDAEALRSGSQ 551 (572)
Q Consensus 534 ~~~~g~~~~A~~~~~~m~ 551 (572)
....|+.++|++.+-...
T Consensus 85 L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 334599999999886654
No 187
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.32 E-value=0.00056 Score=46.09 Aligned_cols=54 Identities=15% Similarity=0.265 Sum_probs=27.6
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhHH
Q 046221 428 YGYGVNGHGETALALYHKMTETGEVPD-SSTYLSILNACGHAGLTNDGLVIFNQMIE 483 (572)
Q Consensus 428 ~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 483 (572)
..+.+.|++++|...|+++++. .|+ ...+..+..++...|++++|...|+++++
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQ--DPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555555555555553 242 24455555555555555555555555543
No 188
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.0049 Score=54.06 Aligned_cols=103 Identities=15% Similarity=0.068 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhC---ChhHHHHHHHhccC-CCChH-HHHH
Q 046221 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAG---CLSDASGLAGKLLE-GMGPN-IWRA 528 (572)
Q Consensus 454 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~-~~~~~-~~~~ 528 (572)
|...|..|...|...|+.+.|...|.++.+-. +++...+..+.+++..+. ...++.++|+++.. +|+.. +...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 33555555555555555555555555554333 233334444444443322 23445555555544 33222 2222
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHhCCCCCCC
Q 046221 529 LLSGCVLHVGRFQDAEALRSGSQKKGIIKIP 559 (572)
Q Consensus 529 l~~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 559 (572)
|...+... |++.+|...++.|.+.....+|
T Consensus 233 LA~~afe~-g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 233 LAFAAFEQ-GDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHc-ccHHHHHHHHHHHHhcCCCCCc
Confidence 23333333 5555555555555555544443
No 189
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.30 E-value=0.0047 Score=51.31 Aligned_cols=113 Identities=13% Similarity=-0.006 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhhCChhHHHHH
Q 046221 436 GETALALYHKMTETGEVP-DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKP-SQEHYGCVVDLLARAGCLSDASGL 513 (572)
Q Consensus 436 ~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 513 (572)
+..+...+..+.+..-.. ....|..+...+...|++++|+..|++++....-++ ...++..+..++...|++++|...
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444555555554321122 235677788888899999999999999975432122 234788899999999999999999
Q ss_pred HHhccC-CC-ChHHHHHHHHHHh-------hhcCCHHHHHHHHHH
Q 046221 514 AGKLLE-GM-GPNIWRALLSGCV-------LHVGRFQDAEALRSG 549 (572)
Q Consensus 514 ~~~~~~-~~-~~~~~~~l~~~~~-------~~~g~~~~A~~~~~~ 549 (572)
+++... .| ....+..+...+. .. |++++|...+++
T Consensus 95 ~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~-g~~~~A~~~~~~ 138 (168)
T CHL00033 95 YFQALERNPFLPQALNNMAVICHYRGEQAIEQ-GDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHc-ccHHHHHHHHHH
Confidence 999887 33 3445555555554 44 787766555544
No 190
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.26 E-value=0.031 Score=45.13 Aligned_cols=110 Identities=15% Similarity=0.068 Sum_probs=69.6
Q ss_pred CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHH
Q 046221 415 GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY 494 (572)
Q Consensus 415 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 494 (572)
...|+...--.|..+....|+..+|...|++...--..-|......+.++....+++..|...++...+.+.-.-++...
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 33466666666667777777777777777776664334466666677777777777777777777766544222223344
Q ss_pred HHHHHHHHhhCChhHHHHHHHhccC-CCChH
Q 046221 495 GCVVDLLARAGCLSDASGLAGKLLE-GMGPN 524 (572)
Q Consensus 495 ~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~ 524 (572)
-.+...|...|++.+|+..|+.+.. -|++.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ 194 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPGPQ 194 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCCHH
Confidence 4566677777777777777777666 44443
No 191
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.20 E-value=0.18 Score=46.42 Aligned_cols=110 Identities=15% Similarity=0.112 Sum_probs=66.6
Q ss_pred cHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCccchHHHHHHhcccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHH
Q 046221 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYS 297 (572)
Q Consensus 218 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 297 (572)
+.+..|.-+...|+...|.++-.+.+ .||...|...+.+++..++|++-.++-.. ..++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 44445556666666666666655542 35666666666777777776665554321 234466667777777
Q ss_pred hcCChhHHHHHHhccCCCCcchHHHHHHHHHHcCChHHHHHHHHHH
Q 046221 298 KCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343 (572)
Q Consensus 298 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 343 (572)
+.|+..+|..+...+ .+..-+..|.+.|++.+|.+.-.+.
T Consensus 249 ~~~~~~eA~~yI~k~------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHhC------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 777777777776663 2355566667777777766554444
No 192
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.18 E-value=0.0024 Score=43.61 Aligned_cols=64 Identities=16% Similarity=0.146 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhC-ChhHHHHHHHhccC
Q 046221 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAG-CLSDASGLAGKLLE 519 (572)
Q Consensus 454 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 519 (572)
+..+|..+...+...|++++|+..|+++++.. +.+...+..+..++.+.| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 45678888888999999999999999998654 446668888889999998 79999999888764
No 193
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.17 E-value=0.0053 Score=54.53 Aligned_cols=100 Identities=14% Similarity=0.193 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-ChhHHHH
Q 046221 422 SWNTIIYGYGVNGHGETALALYHKMTETGEVPDS----STYLSILNACGHAGLTNDGLVIFNQMIEENKVKP-SQEHYGC 496 (572)
Q Consensus 422 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~ 496 (572)
.|...+..+.+.|++++|+..|+.+.+. .|+. ..+..+..+|...|++++|...|+.+++...-.| ....+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3444444445567777777777777763 4543 3556666777777777777777777765432111 1234444
Q ss_pred HHHHHHhhCChhHHHHHHHhccC-CCCh
Q 046221 497 VVDLLARAGCLSDASGLAGKLLE-GMGP 523 (572)
Q Consensus 497 l~~~~~~~g~~~~A~~~~~~~~~-~~~~ 523 (572)
++.++...|+.++|...++++.. .|+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 55666677777777777777665 4443
No 194
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.15 E-value=0.0024 Score=42.93 Aligned_cols=60 Identities=17% Similarity=0.241 Sum_probs=42.1
Q ss_pred HHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC-CCC
Q 046221 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE-GMG 522 (572)
Q Consensus 461 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~ 522 (572)
+...+...|++++|+..|+++++.. +-+...+..+..++...|++++|..+++++.+ .|+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 3456677788888888888886443 34556777777888888888888888887765 444
No 195
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.15 E-value=0.22 Score=46.40 Aligned_cols=128 Identities=14% Similarity=0.078 Sum_probs=79.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 046221 421 VSWNTIIYGYGVNGHGETALALYHKMTETG-EVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVD 499 (572)
Q Consensus 421 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 499 (572)
..|...+..-.+..-.+.|..+|-++.+.| +.++...++.++.-++ .|+...|.++|+--+... +.+.....-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f--~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF--PDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC--CCchHHHHHHHH
Confidence 456666666666666777777787777777 4556677777766543 567777777777665433 223333345566
Q ss_pred HHHhhCChhHHHHHHHhccC--CCC--hHHHHHHHHHHhhhcCCHHHHHHHHHHHHh
Q 046221 500 LLARAGCLSDASGLAGKLLE--GMG--PNIWRALLSGCVLHVGRFQDAEALRSGSQK 552 (572)
Q Consensus 500 ~~~~~g~~~~A~~~~~~~~~--~~~--~~~~~~l~~~~~~~~g~~~~A~~~~~~m~~ 552 (572)
.+.+.++-+.|..+|++..+ ..+ ...|..++.--... |+...|..+=++|.+
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~-G~lN~v~sLe~rf~e 530 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMV-GSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhh-cchHHHHhHHHHHHH
Confidence 66777777777777775554 111 33566666555444 666666665555543
No 196
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.10 E-value=0.0025 Score=43.36 Aligned_cols=61 Identities=15% Similarity=0.299 Sum_probs=45.4
Q ss_pred HhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHH
Q 046221 431 GVNGHGETALALYHKMTETGEVP-DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGC 496 (572)
Q Consensus 431 ~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 496 (572)
.+.|++++|+.+|+++.+. .| +...+..+..+|.+.|++++|..+++.+.... |+...|..
T Consensus 2 l~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~---~~~~~~~~ 63 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD---PDNPEYQQ 63 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG---TTHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---cCHHHHHH
Confidence 4678889999999998884 45 56777788888999999999999998887543 55444433
No 197
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.04 E-value=0.056 Score=47.71 Aligned_cols=24 Identities=4% Similarity=0.023 Sum_probs=13.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhC
Q 046221 222 MMGLFVDFEYAGDALKIFREMRKS 245 (572)
Q Consensus 222 li~~~~~~~~~~~a~~~~~~m~~~ 245 (572)
+.+.|.+.|.+..|..-++.+.+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~ 204 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRD 204 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHH
Confidence 334455556665565555555543
No 198
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.97 E-value=0.015 Score=52.95 Aligned_cols=130 Identities=13% Similarity=0.022 Sum_probs=76.0
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHc-------CCC-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHh----cCCC-CCHH
Q 046221 390 VQNCLISSYSKCGNVDLAYIVFEEM-------GFL-RDVVSWNTIIYGYGVNGHGETALALYHKMTE----TGEV-PDSS 456 (572)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~g~~-p~~~ 456 (572)
.|..|...|.-.|+++.|+..-+.- |.. .....+..+..++.-.|+++.|.+.|+.... .|-+ ....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 3445555566667777776654432 322 2245566677777777777777777766433 2211 1234
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHh----cCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC
Q 046221 457 TYLSILNACGHAGLTNDGLVIFNQMIEE----NKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 457 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
+..+|..+|.-..++..|+.++.+-+.- ....-....+.+|..+|...|..++|+.+.+...+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4556667776667777777776643211 11122334566777777777777777777766553
No 199
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.97 E-value=0.13 Score=45.51 Aligned_cols=54 Identities=7% Similarity=0.028 Sum_probs=35.2
Q ss_pred HHHHHHhhCChhHHHHHHHhccC-----CCChHHHHHHHHHHhhhcCCHHHHHHHHHHHH
Q 046221 497 VVDLLARAGCLSDASGLAGKLLE-----GMGPNIWRALLSGCVLHVGRFQDAEALRSGSQ 551 (572)
Q Consensus 497 l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~l~~~~~~~~g~~~~A~~~~~~m~ 551 (572)
+...|.+.|.+..|..-++.+.+ +..+.....+..++... |..++|......+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~l-g~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQL-QLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHc-CChHHHHHHHHHHh
Confidence 44567778888777777777765 22333455566666655 88888877766553
No 200
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.95 E-value=0.014 Score=50.16 Aligned_cols=65 Identities=17% Similarity=0.210 Sum_probs=36.7
Q ss_pred CCCCCcchhhHHHHHhhcCChhhHHHHhccCCC--CC----hhhHHHHHHHHhhCCChHHHHHHHHHHHHc
Q 046221 1 PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPE--KN----VVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65 (572)
Q Consensus 1 p~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 65 (572)
|+.++...-.....+...|++.+|...|+.+.. |+ ..+.-.++.++.+.|+++.|...+++..+.
T Consensus 1 p~~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 1 PEDTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp ----HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444444555556666677777777777776653 22 234445566677777777777777776654
No 201
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.95 E-value=0.36 Score=47.63 Aligned_cols=30 Identities=17% Similarity=-0.004 Sum_probs=18.8
Q ss_pred CCCcchhhHHHHHhhcCChhhHHHHhccCC
Q 046221 3 IDPYNSSKLLSNYFKSGKIKEAENLFDEIP 32 (572)
Q Consensus 3 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 32 (572)
|.+..|..|.......-.++-|...|-+..
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~ 719 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCG 719 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhc
Confidence 566666666666666666666666665554
No 202
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.93 E-value=0.012 Score=52.38 Aligned_cols=97 Identities=14% Similarity=0.069 Sum_probs=73.3
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCh----hHHHHHHHHHHhhCChhHHHHHHHhccC-CCC----hHHH
Q 046221 456 STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQ----EHYGCVVDLLARAGCLSDASGLAGKLLE-GMG----PNIW 526 (572)
Q Consensus 456 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----~~~~ 526 (572)
..|...+....+.|++++|+..|+.+++.. |+. ..+..+..+|...|++++|...|+++.. .|+ +..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 445555555567799999999999998765 443 4777899999999999999999999986 333 3334
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHHHHhCCCC
Q 046221 527 RALLSGCVLHVGRFQDAEALRSGSQKKGII 556 (572)
Q Consensus 527 ~~l~~~~~~~~g~~~~A~~~~~~m~~~~~~ 556 (572)
..+...+... |++++|...+++..+.-+.
T Consensus 221 ~klg~~~~~~-g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 221 FKVGVIMQDK-GDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHHCcC
Confidence 4444444444 9999999999999876654
No 203
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.93 E-value=0.0043 Score=42.92 Aligned_cols=54 Identities=20% Similarity=0.185 Sum_probs=30.7
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhHH
Q 046221 428 YGYGVNGHGETALALYHKMTETGEVPD-SSTYLSILNACGHAGLTNDGLVIFNQMIE 483 (572)
Q Consensus 428 ~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 483 (572)
..|.+.+++++|.++++.+... .|+ ...+.....++.+.|++++|.+.|+.+++
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALEL--DPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3455566666666666666652 343 34555555556666666666666666654
No 204
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.92 E-value=0.18 Score=43.31 Aligned_cols=136 Identities=10% Similarity=-0.040 Sum_probs=86.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHH---
Q 046221 319 SWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLI--- 395 (572)
Q Consensus 319 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--- 395 (572)
..+.++..+.-.|.+.-.+..+.+.. +...+.++.....+.+.-.+.|+.+.|...++...+..-..+..+.+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi-~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVI-KYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHH-HhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34455566666777788888888887 55556677777778888888888888888888776654444444443333
Q ss_pred --HHhhhcCChHHHHHHHHHc--CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHH
Q 046221 396 --SSYSKCGNVDLAYIVFEEM--GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSST 457 (572)
Q Consensus 396 --~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~ 457 (572)
..|.-++++.+|...+.++ ....++..-|.-.-+..-.|+...|++.++.|.+ ..|...+
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l 321 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYL 321 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccch
Confidence 3445566777777777776 2223444444444444456777778888877777 3454433
No 205
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.025 Score=49.81 Aligned_cols=97 Identities=15% Similarity=0.183 Sum_probs=44.5
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhcc---CChHHHHHHHHHhHHhcCCCCChhHH
Q 046221 419 DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNACGHA---GLTNDGLVIFNQMIEENKVKPSQEHY 494 (572)
Q Consensus 419 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~ 494 (572)
|...|-.|...|...|+.+.|...|.+..+ +.| +...+..+..++..+ ....++..+|+++++.. +-++...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D--~~~iral 230 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD--PANIRAL 230 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC--CccHHHH
Confidence 444555555555555555555555555554 233 223333333332211 12334555555554322 2233344
Q ss_pred HHHHHHHHhhCChhHHHHHHHhccC
Q 046221 495 GCVVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 495 ~~l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
.-|...+...|++.+|...|+.|.+
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHh
Confidence 4444455555555555555555554
No 206
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.88 E-value=0.17 Score=47.03 Aligned_cols=75 Identities=8% Similarity=0.062 Sum_probs=32.8
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhc---CCCchhHHHHHHHHhhh---cCChHHHHHHHHHc---CCCCCHhHHHHH
Q 046221 356 LVSILTASGELAALEICLQLHGIAFEAG---FPRYRSVQNCLISSYSK---CGNVDLAYIVFEEM---GFLRDVVSWNTI 426 (572)
Q Consensus 356 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~---~~~~~~~~~~~l 426 (572)
...++-+|....+++...++.+.+.... +.....+--...-++-+ .|+.++|++++..+ ...+++.+|..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 3344444555555555555555554431 11111222223333334 45555555555552 233444455554
Q ss_pred HHHH
Q 046221 427 IYGY 430 (572)
Q Consensus 427 ~~~~ 430 (572)
...|
T Consensus 224 GRIy 227 (374)
T PF13281_consen 224 GRIY 227 (374)
T ss_pred HHHH
Confidence 4443
No 207
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.79 E-value=0.0055 Score=42.35 Aligned_cols=63 Identities=14% Similarity=0.045 Sum_probs=44.0
Q ss_pred HHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC-CCChHHHH
Q 046221 463 NACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE-GMGPNIWR 527 (572)
Q Consensus 463 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~ 527 (572)
..|.+.+++++|.++++.+++.. |.+...+.....++.+.|++++|.+.+++..+ .|+.....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 45677788888888888777543 44555666777777888888888888887776 55554433
No 208
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.77 E-value=0.024 Score=43.69 Aligned_cols=98 Identities=12% Similarity=0.163 Sum_probs=66.2
Q ss_pred hhHHHHHHHHhhhcCChHHHHHHHHHc-CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q 046221 388 RSVQNCLISSYSKCGNVDLAYIVFEEM-GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466 (572)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 466 (572)
..++..++.++++.|+++....+++.. |+.++... ..+. --....+.|+..+...++.+|+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~sf~ 63 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVHSFG 63 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHHHHH
Confidence 455667777777777777777777666 44333110 0000 1223346778888888888888
Q ss_pred ccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 046221 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLAR 503 (572)
Q Consensus 467 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 503 (572)
..|++..|.++++...+..+++.+...|..|++-...
T Consensus 64 ~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 64 YNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred hcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 8888888888888888888887777888888765443
No 209
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.76 E-value=0.71 Score=46.12 Aligned_cols=109 Identities=9% Similarity=0.006 Sum_probs=71.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhccccc
Q 046221 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAA 368 (572)
Q Consensus 289 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 368 (572)
.+--+.-+...|+..+|.++-.+..-||-..|-.-+.+++..+++++-+++-+..+ ++..|..+..+|.+.|+
T Consensus 687 l~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk-------sPIGy~PFVe~c~~~~n 759 (829)
T KOG2280|consen 687 LHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK-------SPIGYLPFVEACLKQGN 759 (829)
T ss_pred HHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC-------CCCCchhHHHHHHhccc
Confidence 34444555666777777777777777777777777777777777766665554442 25567777777777777
Q ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHH
Q 046221 369 LEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEE 413 (572)
Q Consensus 369 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 413 (572)
.++|..++.+..... -.+.+|.+.|++.+|.++--+
T Consensus 760 ~~EA~KYiprv~~l~---------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 760 KDEAKKYIPRVGGLQ---------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHhhhhhccCChH---------HHHHHHHHhccHHHHHHHHHH
Confidence 777777776554321 256777888888877765443
No 210
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.71 E-value=0.0034 Score=44.12 Aligned_cols=62 Identities=13% Similarity=0.218 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHhHHhcC-CC---CC-hhHHHHHHHHHHhhCChhHHHHHHHhc
Q 046221 456 STYLSILNACGHAGLTNDGLVIFNQMIEENK-VK---PS-QEHYGCVVDLLARAGCLSDASGLAGKL 517 (572)
Q Consensus 456 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~---~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 517 (572)
.+|+.+...|...|++++|+..|+++++... .. |+ ..++..+..++...|++++|++++++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4566666677777777777777776653210 11 11 335666666777777777777776654
No 211
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.68 E-value=0.81 Score=45.76 Aligned_cols=341 Identities=12% Similarity=0.001 Sum_probs=178.5
Q ss_pred CCCCCCHhhHHH-----HHHHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHHHHHHhCC---CHHHHHHHHhhcCC--
Q 046221 144 SGLVPNAVTMLT-----VIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLM---DLDAAIQIFREMEC-- 213 (572)
Q Consensus 144 ~~~~p~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~-- 213 (572)
-|+..+..-|.. +|..+...+.+..|.++-..+-..-..- ..+|......+.+.. +-+.+..+-+++..
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 356666555544 4555666777777777766553211111 455666666665542 33344445455554
Q ss_pred CCcccHHHHHHHHHccCCHHHHHHHHHHHHhCC----CCCCccchHHHHHHhcccCChHHHHHHHHHHHHhCCCCCcchH
Q 046221 214 KDVISWTRMMGLFVDFEYAGDALKIFREMRKSR----IICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLS 289 (572)
Q Consensus 214 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 289 (572)
....+|..+.+.....|+++-|..+++.=...+ +-.+..-+...+.-+...|+.+....++-++...-.
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~------- 577 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLN------- 577 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHH-------
Confidence 355677778877778888888887766422111 001223344444555556666665555555443210
Q ss_pred HHHHHHHHhcCChhHHHHHHhccCC-CCcchHHHHHHHHHHcCChHHHHHHHH--HH---HhcCCCCCCHhHHHHHHHHh
Q 046221 290 NSIIAMYSKCGDLDSSRSVFNQITE-KSLVSWTAIISGYVQNGCAREALNQFI--KM---RQEKTDSVDSITLVSILTAS 363 (572)
Q Consensus 290 ~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~--~~---~~~~~~~~~~~~~~~ll~~~ 363 (572)
....+....+.-.|..+|....+ .|..+ +-..| +.++-..+..-|. .. ....+..|+.. .....+
T Consensus 578 --~s~l~~~l~~~p~a~~lY~~~~r~~~~~~---l~d~y-~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk---~~a~~~ 648 (829)
T KOG2280|consen 578 --RSSLFMTLRNQPLALSLYRQFMRHQDRAT---LYDFY-NQDDNHQALASFHLQASYAAETIEGRIPALK---TAANAF 648 (829)
T ss_pred --HHHHHHHHHhchhhhHHHHHHHHhhchhh---hhhhh-hcccchhhhhhhhhhhhhhhhhhcccchhHH---HHHHHH
Confidence 00001111122223333332221 11000 00111 1111111111111 10 00112222222 222233
Q ss_pred cccccH---HHH-------HHHHHHHH-HhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHcCCCCCHhHHHHHHHHHHh
Q 046221 364 GELAAL---EIC-------LQLHGIAF-EAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGV 432 (572)
Q Consensus 364 ~~~~~~---~~a-------~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 432 (572)
.+.... +++ ..+.+.+. +.|..-.-.+.+--+..+...|+..+|.++-.+..+ ||...|-.-+.+++.
T Consensus 649 a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki-pdKr~~wLk~~aLa~ 727 (829)
T KOG2280|consen 649 AKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI-PDKRLWWLKLTALAD 727 (829)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC-cchhhHHHHHHHHHh
Confidence 332221 111 11111111 123233333445556667788999999999999988 898888888999999
Q ss_pred cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHH
Q 046221 433 NGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASG 512 (572)
Q Consensus 433 ~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 512 (572)
.+++++-+++-+.++ .+.-|.-...+|.+.|+.++|.+++-+.- |.+ -.+.+|.+.|++.+|.+
T Consensus 728 ~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~---~l~-------ekv~ay~~~~~~~eAad 791 (829)
T KOG2280|consen 728 IKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG---GLQ-------EKVKAYLRVGDVKEAAD 791 (829)
T ss_pred hhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC---ChH-------HHHHHHHHhccHHHHHH
Confidence 999887666554433 24556777889999999999999887541 111 46788899999999988
Q ss_pred HHHhcc
Q 046221 513 LAGKLL 518 (572)
Q Consensus 513 ~~~~~~ 518 (572)
+--+-.
T Consensus 792 ~A~~~r 797 (829)
T KOG2280|consen 792 LAAEHR 797 (829)
T ss_pred HHHHhc
Confidence 766543
No 212
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.54 E-value=0.081 Score=45.39 Aligned_cols=140 Identities=9% Similarity=-0.043 Sum_probs=82.3
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHc---CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHH-----
Q 046221 390 VQNCLISSYSKCGNVDLAYIVFEEM---GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSI----- 461 (572)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l----- 461 (572)
+.++++.++.-.|.+.-....+.+. .-+.++.....|...-.+.||.+.|..+|++..+..-..|..+.+.+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3455555555566666666666665 22235566666777777778888888888766554333333333333
Q ss_pred HHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC-CCChHHHHHHHH
Q 046221 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE-GMGPNIWRALLS 531 (572)
Q Consensus 462 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~ 531 (572)
...|.-++++..|...+.++++.. +.++...+.-.-++.-.|+..+|.+.++.|.+ .|.+.+-++++-
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D--~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~ 327 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD--PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLF 327 (366)
T ss_pred hhheecccchHHHHHHHhhccccC--CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHH
Confidence 233556667777777777776544 22333333333344455777788888887776 666665554433
No 213
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.53 E-value=0.023 Score=51.85 Aligned_cols=129 Identities=15% Similarity=0.113 Sum_probs=84.0
Q ss_pred HHHHHHHHhcccccHHHHHHHHHHHH----HhcCC-CchhHHHHHHHHhhhcCChHHHHHHHHHc-------CC-CCCHh
Q 046221 355 TLVSILTASGELAALEICLQLHGIAF----EAGFP-RYRSVQNCLISSYSKCGNVDLAYIVFEEM-------GF-LRDVV 421 (572)
Q Consensus 355 ~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~-~~~~~ 421 (572)
.|..+-..|.-.|+++.|+...+.-. +.|-. .....+..+..++.-.|+++.|.+.++.. +. .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45555566666788888887654332 22322 12345566778888889999998888765 22 12334
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh----cC-CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHH
Q 046221 422 SWNTIIYGYGVNGHGETALALYHKMTE----TG-EVPDSSTYLSILNACGHAGLTNDGLVIFNQMIE 483 (572)
Q Consensus 422 ~~~~l~~~~~~~~~~~~A~~~~~~~~~----~g-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 483 (572)
+.-+|...|.-..++++|+.++.+-+. .+ ..-....+.+|..+|...|..++|+.+.+..++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 445566777777788888887766332 11 122447788899999999999999888776543
No 214
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.035 Score=50.92 Aligned_cols=96 Identities=13% Similarity=-0.038 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC-CCChHHHHHHHHHHh
Q 046221 456 STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE-GMGPNIWRALLSGCV 534 (572)
Q Consensus 456 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~ 534 (572)
.++..+..+|.+.+++..|++..++.++.. +++......-..++...|+++.|+..|+++.+ .|+......-+..|.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~--~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD--PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLK 335 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC--CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 456667777778888888888887777543 55666666667778888888888888888777 666666555555554
Q ss_pred hh-cCCHHHHHHHHHHHHhC
Q 046221 535 LH-VGRFQDAEALRSGSQKK 553 (572)
Q Consensus 535 ~~-~g~~~~A~~~~~~m~~~ 553 (572)
.. ....+...++|..|-.+
T Consensus 336 ~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 33 12333346667766543
No 215
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.46 E-value=0.8 Score=43.00 Aligned_cols=80 Identities=11% Similarity=0.082 Sum_probs=58.1
Q ss_pred HHHcCCCC----CHhHHHHHHHH--HHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHh
Q 046221 411 FEEMGFLR----DVVSWNTIIYG--YGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEE 484 (572)
Q Consensus 411 ~~~~~~~~----~~~~~~~l~~~--~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 484 (572)
+++.|++| +...-|.|..+ +...|++.++.-.-..+.+ +.|++.+|..+.-+.....++++|..++..+
T Consensus 447 i~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L--- 521 (549)
T PF07079_consen 447 ITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL--- 521 (549)
T ss_pred HHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC---
Confidence 34445544 23344555444 4568899998888888877 8899999999988888999999999988754
Q ss_pred cCCCCChhHHHHHH
Q 046221 485 NKVKPSQEHYGCVV 498 (572)
Q Consensus 485 ~~~~~~~~~~~~l~ 498 (572)
||+..++++-+
T Consensus 522 ---P~n~~~~dskv 532 (549)
T PF07079_consen 522 ---PPNERMRDSKV 532 (549)
T ss_pred ---CCchhhHHHHH
Confidence 67777766543
No 216
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.45 E-value=0.055 Score=41.75 Aligned_cols=96 Identities=18% Similarity=0.159 Sum_probs=68.2
Q ss_pred CHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc-CCCCCHhHHHHHHHHH
Q 046221 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFLRDVVSWNTIIYGY 430 (572)
Q Consensus 352 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~ 430 (572)
|..++..++.++++.|+.+....+++..- |+.++... ..+. +..- +..|+..+..+++.+|
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~-------~~~~spl~Pt~~lL~AIv~sf 62 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD-------YPPSSPLYPTSRLLIAIVHSF 62 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc-------cCCCCCCCCCHHHHHHHHHHH
Confidence 56788999999999999999999886554 33222110 0011 1111 6668888889999999
Q ss_pred HhcCChHHHHHHHHHHHhc-CCCCCHHHHHHHHHHH
Q 046221 431 GVNGHGETALALYHKMTET-GEVPDSSTYLSILNAC 465 (572)
Q Consensus 431 ~~~~~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~ 465 (572)
+..|++..|+++.+...+. +++-+..+|..|+.-+
T Consensus 63 ~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 63 GYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 8899999999988887664 5555678888887743
No 217
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.37 E-value=0.036 Score=44.68 Aligned_cols=70 Identities=23% Similarity=0.308 Sum_probs=37.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhH----HhcCCCCChhHH
Q 046221 423 WNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNACGHAGLTNDGLVIFNQMI----EENKVKPSQEHY 494 (572)
Q Consensus 423 ~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~ 494 (572)
...++..+...|+++.|..+++.+.. ..| |...|..++.+|...|+..+|.+.|+++. +..|+.|+..+-
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 34445555566666666666666666 344 44666666666666666666666666542 234566665543
No 218
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.36 E-value=1.4 Score=44.79 Aligned_cols=177 Identities=14% Similarity=0.006 Sum_probs=107.5
Q ss_pred hHHHHHhhcCChhhHHHHhccCCCCCh---hhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHcCCCC
Q 046221 10 KLLSNYFKSGKIKEAENLFDEIPEKNV---VSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQN 86 (572)
Q Consensus 10 ~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 86 (572)
.-+..+.+..-++-|+.+-..-..+.. .......+-+.+.|++++|...|-+-... .--..++.-|.....
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~------le~s~Vi~kfLdaq~ 412 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF------LEPSEVIKKFLDAQR 412 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc------CChHHHHHHhcCHHH
Confidence 346667777777888877765443211 12233334566788999888877664421 112345555666666
Q ss_pred hHHHHHHHHHHHHhcCCCCcccCCCCCCceeHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCh
Q 046221 87 LELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166 (572)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 166 (572)
+..-...++.+.+.|.. +...-..|+.+|.+.++.++..+..+.-. .|.. ..-....+..|.+.+-.
T Consensus 413 IknLt~YLe~L~~~gla----------~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl 479 (933)
T KOG2114|consen 413 IKNLTSYLEALHKKGLA----------NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYL 479 (933)
T ss_pred HHHHHHHHHHHHHcccc----------cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChH
Confidence 67777778888888873 33456678889999998888766666543 2211 11234456666666666
Q ss_pred HHHHHHHHHHHHhcCCCChhHHhHHHHHHHhCCCHHHHHHHHhhcCC
Q 046221 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC 213 (572)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (572)
++|.-+-..... .......+ +-..+++++|.+.+..++-
T Consensus 480 ~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp~ 518 (933)
T KOG2114|consen 480 DEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLPI 518 (933)
T ss_pred HHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCCH
Confidence 666555433222 23333333 3445789999999998864
No 219
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.31 E-value=0.88 Score=42.46 Aligned_cols=30 Identities=17% Similarity=0.122 Sum_probs=22.8
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhHH
Q 046221 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIE 483 (572)
Q Consensus 454 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 483 (572)
|..-+.+++.++.-.|++++|.+..++|.+
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 556667777788888888888888888864
No 220
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.98 Score=41.87 Aligned_cols=151 Identities=11% Similarity=0.008 Sum_probs=75.6
Q ss_pred HhcccCChHHHHHHHHHHHHhCCCCCcchHHHHHH--HHHhcCChhHHHHHHhccCCCCcch---------------HHH
Q 046221 260 VNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIA--MYSKCGDLDSSRSVFNQITEKSLVS---------------WTA 322 (572)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~ 322 (572)
++...|+.++|.++--.+++... ...+..+++ ++--.++.+.+...|++...-++.. |..
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~---~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~ 254 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDA---TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKE 254 (486)
T ss_pred hhhhcccchhHHHHHHHHHhccc---chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHh
Confidence 45566777777776666665431 112222222 2333566777888887776533321 111
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhc--CCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhh
Q 046221 323 IISGYVQNGCAREALNQFIKMRQE--KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK 400 (572)
Q Consensus 323 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 400 (572)
-..-..+.|.+..|.+.+.+.... ....|+...|........+.|+.++|+.-.+...... +.-...|..-..++..
T Consensus 255 ~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 255 RGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLA 333 (486)
T ss_pred hhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHH
Confidence 122345677788888888776522 2233444455555555556666666655555444322 0001111112223333
Q ss_pred cCChHHHHHHHHHc
Q 046221 401 CGNVDLAYIVFEEM 414 (572)
Q Consensus 401 ~g~~~~A~~~~~~~ 414 (572)
.+++++|.+-+++.
T Consensus 334 le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555665555554
No 221
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.17 E-value=1.2 Score=41.89 Aligned_cols=143 Identities=17% Similarity=0.199 Sum_probs=96.2
Q ss_pred hhHHHHHHHHhhhcCChHHHHHHHHHc---C-CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHH-HHHH
Q 046221 388 RSVQNCLISSYSKCGNVDLAYIVFEEM---G-FLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY-LSIL 462 (572)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~A~~~~~~~---~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~-~~l~ 462 (572)
..+|..+++...+..-++.|..+|-+. + ..+++..+++++..++. |+...|.++|+--... -||...| .-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 345566777777778888888888887 3 44677788888877654 6677788888765543 4555333 3445
Q ss_pred HHHhccCChHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhhCChhHHHHHHHhccC-CCChHHHHHHHHHHhh
Q 046221 463 NACGHAGLTNDGLVIFNQMIEENKVKPS--QEHYGCVVDLLARAGCLSDASGLAGKLLE-GMGPNIWRALLSGCVL 535 (572)
Q Consensus 463 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~ 535 (572)
.-+...++-..|..+|+..+++- ..+ ..+|..+++.=..-|+...|..+-+++.+ -|...+.......+..
T Consensus 474 ~fLi~inde~naraLFetsv~r~--~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~i 547 (660)
T COG5107 474 LFLIRINDEENARALFETSVERL--EKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYAI 547 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHH--HHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHhh
Confidence 55677888888888888665432 223 45788888877888888888877777766 4555444444444433
No 222
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.13 E-value=0.014 Score=41.01 Aligned_cols=63 Identities=19% Similarity=0.268 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CC---CC-HHHHHHHHHHHhccCChHHHHHHHHHhHH
Q 046221 421 VSWNTIIYGYGVNGHGETALALYHKMTETG--EV---PD-SSTYLSILNACGHAGLTNDGLVIFNQMIE 483 (572)
Q Consensus 421 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g--~~---p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 483 (572)
.+|+.+...|...|++++|+..|++..+.. .. |+ ..++..+..++...|++++|+++++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456666777777777777777777665420 11 22 35666777777777777777777777653
No 223
>PRK15331 chaperone protein SicA; Provisional
Probab=96.11 E-value=0.14 Score=41.06 Aligned_cols=84 Identities=11% Similarity=-0.088 Sum_probs=44.0
Q ss_pred hhhcCChHHHHHHHHHc--CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHH
Q 046221 398 YSKCGNVDLAYIVFEEM--GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGL 475 (572)
Q Consensus 398 ~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~ 475 (572)
+...|++++|..+|.-+ -..-+..-|..|..++-..+++++|+..|......+ .-|+..+.....++...|+.+.|.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHH
Confidence 34556666666666655 111233344455555555566666666665554432 123344445555556666666666
Q ss_pred HHHHHhH
Q 046221 476 VIFNQMI 482 (572)
Q Consensus 476 ~~~~~~~ 482 (572)
..|+.++
T Consensus 126 ~~f~~a~ 132 (165)
T PRK15331 126 QCFELVN 132 (165)
T ss_pred HHHHHHH
Confidence 6665554
No 224
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.09 E-value=0.26 Score=48.45 Aligned_cols=115 Identities=20% Similarity=0.175 Sum_probs=64.1
Q ss_pred CChHHHHHHHHHHHhcCCCCCHHHHHHH-HHHHhccCChHHHHHHHHHhHHhcCC--CCChhHHHHHHHHHHhhCChhHH
Q 046221 434 GHGETALALYHKMTETGEVPDSSTYLSI-LNACGHAGLTNDGLVIFNQMIEENKV--KPSQEHYGCVVDLLARAGCLSDA 510 (572)
Q Consensus 434 ~~~~~A~~~~~~~~~~g~~p~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 510 (572)
.+.+.|.++++.+.+. -|+...|... .+.+...|++++|++.|+++++...- +.....+--+.-.+.-.+++++|
T Consensus 247 ~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 3456677777777663 5655444332 33456667777777777765421110 11122333445556667777777
Q ss_pred HHHHHhccC--CCChHHHHHHHHHHhhhcCCH-------HHHHHHHHHH
Q 046221 511 SGLAGKLLE--GMGPNIWRALLSGCVLHVGRF-------QDAEALRSGS 550 (572)
Q Consensus 511 ~~~~~~~~~--~~~~~~~~~l~~~~~~~~g~~-------~~A~~~~~~m 550 (572)
.+.|.++.+ .-+...|.-+..+|....|+. ++|.+++.+.
T Consensus 325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 777777765 334444555555555545666 6666666655
No 225
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.04 E-value=1.8 Score=43.03 Aligned_cols=29 Identities=10% Similarity=-0.089 Sum_probs=18.1
Q ss_pred CCceeHHHHHHHHHhCCChHHHHHHHHHH
Q 046221 113 PYLVSCNAIVAGFINNKLFQQAVLLFNFF 141 (572)
Q Consensus 113 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 141 (572)
|....|..+.......-.++.|...|-+.
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc 718 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRC 718 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhh
Confidence 66667777776666655666665555444
No 226
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.93 E-value=0.036 Score=44.66 Aligned_cols=61 Identities=16% Similarity=0.187 Sum_probs=46.1
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC
Q 046221 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 457 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
+...++..+...|++++|..+++.++... |.+...+..++.+|...|+..+|.+.|+++..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d--P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD--PYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 44556667778888999999988888655 55777888889999999999999888887754
No 227
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.86 E-value=1.4 Score=40.12 Aligned_cols=99 Identities=11% Similarity=0.043 Sum_probs=53.9
Q ss_pred HHHHHHHHhhhcCChHH---HHHHHHHc-CCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 046221 390 VQNCLISSYSKCGNVDL---AYIVFEEM-GFLRD-VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464 (572)
Q Consensus 390 ~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 464 (572)
+...++.+|...+..+. |.++++.+ +.-|+ +..+-.-+..+.+.++.+.+.+.+.+|... +.-....+..++..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHHHH
Confidence 44556677777666543 44455445 11133 334444456666678888888888888875 22123444444444
Q ss_pred H---hccCChHHHHHHHHHhHHhcCCCCCh
Q 046221 465 C---GHAGLTNDGLVIFNQMIEENKVKPSQ 491 (572)
Q Consensus 465 ~---~~~g~~~~a~~~~~~~~~~~~~~~~~ 491 (572)
+ .. .....|...+..++..+ +.|..
T Consensus 165 i~~l~~-~~~~~a~~~ld~~l~~r-~~~~~ 192 (278)
T PF08631_consen 165 IKQLAE-KSPELAAFCLDYLLLNR-FKSSE 192 (278)
T ss_pred HHHHHh-hCcHHHHHHHHHHHHHH-hCCCh
Confidence 3 33 23445666666665433 34444
No 228
>PRK15331 chaperone protein SicA; Provisional
Probab=95.85 E-value=0.2 Score=40.19 Aligned_cols=95 Identities=7% Similarity=-0.060 Sum_probs=67.0
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCCh
Q 046221 429 GYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCL 507 (572)
Q Consensus 429 ~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 507 (572)
-+...|++++|..+|.-+.-. .| +..-+..|..++-..+++++|+..|..+.--. .-|+..+-....+|...|+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~--d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIY--DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--KNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--cCCCCccchHHHHHHHhCCH
Confidence 345678888888888877763 34 44556667777778888888888888764322 23444455677888888888
Q ss_pred hHHHHHHHhccCCCChHHHH
Q 046221 508 SDASGLAGKLLEGMGPNIWR 527 (572)
Q Consensus 508 ~~A~~~~~~~~~~~~~~~~~ 527 (572)
+.|+..|+...+.|......
T Consensus 122 ~~A~~~f~~a~~~~~~~~l~ 141 (165)
T PRK15331 122 AKARQCFELVNERTEDESLR 141 (165)
T ss_pred HHHHHHHHHHHhCcchHHHH
Confidence 88888888887755544433
No 229
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.84 E-value=0.12 Score=45.11 Aligned_cols=95 Identities=16% Similarity=0.221 Sum_probs=70.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCh-hHHHH
Q 046221 422 SWNTIIYGYGVNGHGETALALYHKMTETGEVPD----SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQ-EHYGC 496 (572)
Q Consensus 422 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~ 496 (572)
.|+.-+..| +.|++..|...|...++.. |+ ...+.-|..++...|++++|..+|..+.+..+-.|.. ..+--
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 566655544 5566888888888888752 32 2445667888888888888888888887766544444 57777
Q ss_pred HHHHHHhhCChhHHHHHHHhccC
Q 046221 497 VVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 497 l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
|..+..+.|+.++|...|++..+
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH
Confidence 88888888888888888888776
No 230
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.82 E-value=0.37 Score=46.63 Aligned_cols=157 Identities=13% Similarity=0.085 Sum_probs=104.4
Q ss_pred HHHHhCCChHHHHHHHH--HHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHHHHHHhCCC
Q 046221 123 AGFINNKLFQQAVLLFN--FFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMD 200 (572)
Q Consensus 123 ~~~~~~~~~~~a~~~~~--~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (572)
+...-.|+++++.++.+ ++.. .......+.+++-+.+.|-.+.|.++...-. .-.+...+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~---~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP---NIPKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG---G--HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc---cCChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCC
Confidence 45566789998877775 2221 1124557888888899999999988754321 23456678899
Q ss_pred HHHHHHHHhhcCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCccchHHHHHHhcccCChHHHHHHHHHHHHh
Q 046221 201 LDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280 (572)
Q Consensus 201 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 280 (572)
++.|.++.++.. +...|..|.......|+++-|.+.|.+..+ |..++-.+...|+.+...++.+.....
T Consensus 334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 999999888775 667999999999999999999999998653 556677777788888877777776666
Q ss_pred CCCCCcchHHHHHHHHHhcCChhHHHHHHhc
Q 046221 281 GLQSELRLSNSIIAMYSKCGDLDSSRSVFNQ 311 (572)
Q Consensus 281 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 311 (572)
| -++....++.-.|++++..+++.+
T Consensus 403 ~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 403 G------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred c------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5 234455555666777777766654
No 231
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.80 E-value=0.16 Score=44.16 Aligned_cols=126 Identities=11% Similarity=0.051 Sum_probs=85.6
Q ss_pred hHHHHhccCC--CCChhhHHHHHHHHh-----hCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHcCCCChHHHHHHHH
Q 046221 23 EAENLFDEIP--EKNVVSWSIVIHGYS-----INGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHG 95 (572)
Q Consensus 23 ~A~~~~~~~~--~~~~~~~~~li~~~~-----~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 95 (572)
..+..|+..+ ++|-.+|-+.+..+. +.++++-....+..|.+.|+.-|..+|..||..+-+..-..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP------- 124 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIP------- 124 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccccc-------
Confidence 3445566665 467778888887664 34677777788889999999999999999998875432211
Q ss_pred HHHHhcCCCCcccCCCCCCceeHHHHHHHHHhC-CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCh-HHHHHHH
Q 046221 96 LMVKFGLESDLFEGLKNPYLVSCNAIVAGFINN-KLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR-ALCELIH 173 (572)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~ 173 (572)
-|.+=+.+..- .+-+-+++++++|...|+.||..+-..+++++.+.+-. .+...++
T Consensus 125 ----------------------~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~ 182 (406)
T KOG3941|consen 125 ----------------------QNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRML 182 (406)
T ss_pred ----------------------HHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHH
Confidence 12222222222 23345788999999999999999999999999887743 3344444
Q ss_pred HHHH
Q 046221 174 GLTI 177 (572)
Q Consensus 174 ~~~~ 177 (572)
-.|-
T Consensus 183 yWmP 186 (406)
T KOG3941|consen 183 YWMP 186 (406)
T ss_pred Hhhh
Confidence 4443
No 232
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.73 E-value=0.061 Score=50.63 Aligned_cols=61 Identities=15% Similarity=0.022 Sum_probs=28.6
Q ss_pred hhHHHHHHHHhhhcCChHHHHHHHHHc-CCCCCH----hHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 046221 388 RSVQNCLISSYSKCGNVDLAYIVFEEM-GFLRDV----VSWNTIIYGYGVNGHGETALALYHKMTE 448 (572)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 448 (572)
...++.+..+|.+.|++++|+..|++. .+.|+. .+|..+..+|...|+.++|+..+++.++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444555555555555555443 333332 2244444455555555555555555444
No 233
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.71 E-value=0.13 Score=44.57 Aligned_cols=96 Identities=24% Similarity=0.237 Sum_probs=65.3
Q ss_pred HHHHc-CCCCCHhHHHHHHHHHHh-----cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccC--------------
Q 046221 410 VFEEM-GFLRDVVSWNTIIYGYGV-----NGHGETALALYHKMTETGEVPDSSTYLSILNACGHAG-------------- 469 (572)
Q Consensus 410 ~~~~~-~~~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g-------------- 469 (572)
.|..+ +-..|..+|-..+..+.. .+..+-....++.|.+-|+.-|..+|+.|+..+-+..
T Consensus 56 ~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HY 135 (406)
T KOG3941|consen 56 QFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHY 135 (406)
T ss_pred hhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhC
Confidence 34444 334566666666666543 2445666666777788888888888887777654322
Q ss_pred --ChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCC
Q 046221 470 --LTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGC 506 (572)
Q Consensus 470 --~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 506 (572)
+-+-++.++++| +.+|+.||.++-..|++++.+.|-
T Consensus 136 P~QQ~C~I~vLeqM-E~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 136 PQQQNCAIKVLEQM-EWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred chhhhHHHHHHHHH-HHcCCCCchHHHHHHHHHhccccc
Confidence 234577888888 788899999988888888877664
No 234
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.67 E-value=1.2 Score=40.10 Aligned_cols=156 Identities=13% Similarity=0.073 Sum_probs=89.6
Q ss_pred hcCChHHHHHHHHHc--CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHH----HHHHHHhccCChHH
Q 046221 400 KCGNVDLAYIVFEEM--GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL----SILNACGHAGLTND 473 (572)
Q Consensus 400 ~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~----~l~~~~~~~g~~~~ 473 (572)
-.|+..+|...++++ ..+.|...++..=.+|...|+.+.-...++++... -.||...|. ++.-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 356666666666666 55456666666666777777777766677666654 244443332 23334456677777
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccCCCCh-------HHHHHHHHHHhhhcCCHHHHHHH
Q 046221 474 GLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGP-------NIWRALLSGCVLHVGRFQDAEAL 546 (572)
Q Consensus 474 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~~l~~~~~~~~g~~~~A~~~ 546 (572)
|++.-++.++-+ +.|.....++...+...|++.++.++..+-...-+. .-|.. ..|....+.++.|+++
T Consensus 194 AEk~A~ralqiN--~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~--Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 194 AEKQADRALQIN--RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHT--ALFHIEGAEYEKALEI 269 (491)
T ss_pred HHHHHHhhccCC--CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHH--HHhhhcccchhHHHHH
Confidence 777777666443 345555566666667777777777777665441111 11221 1122233677777777
Q ss_pred HHHHHhCCCCCCCc
Q 046221 547 RSGSQKKGIIKIPG 560 (572)
Q Consensus 547 ~~~m~~~~~~~~~~ 560 (572)
|+.-.-+...++.+
T Consensus 270 yD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 270 YDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHhhccch
Confidence 77655555554444
No 235
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.67 E-value=0.14 Score=48.41 Aligned_cols=63 Identities=11% Similarity=0.057 Sum_probs=49.3
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHhccCChHHHHHHHHHhHH
Q 046221 419 DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS----STYLSILNACGHAGLTNDGLVIFNQMIE 483 (572)
Q Consensus 419 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 483 (572)
+...|+.+..+|.+.|++++|+..|++.++ +.|+. .+|..+..+|...|+.++|+..++++++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 466778888888888888888888888887 56764 3477888888888888888888888875
No 236
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.18 Score=46.49 Aligned_cols=120 Identities=13% Similarity=0.076 Sum_probs=85.9
Q ss_pred HHhhhcCChHHHHHHHHHc--------CCC---------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHH
Q 046221 396 SSYSKCGNVDLAYIVFEEM--------GFL---------RDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458 (572)
Q Consensus 396 ~~~~~~g~~~~A~~~~~~~--------~~~---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~ 458 (572)
+.|.+.|++..|..-|++. +.. .-...+..+..+|.+.+++..|+...++.+..+ ++|....
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 4566777777777666654 111 123456778888999999999999999999953 4567888
Q ss_pred HHHHHHHhccCChHHHHHHHHHhHHhcCCCCChh-HHHHHHHHHHhhCChhHH-HHHHHhccC
Q 046221 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQE-HYGCVVDLLARAGCLSDA-SGLAGKLLE 519 (572)
Q Consensus 459 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 519 (572)
..-..+|...|+++.|...|+++++. .|+.. +-..|+.+-.+.....+. .++|..|..
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~---~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKL---EPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88889999999999999999999863 45544 445555555555544443 677777765
No 237
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.53 E-value=4.2 Score=43.41 Aligned_cols=47 Identities=15% Similarity=-0.096 Sum_probs=22.9
Q ss_pred HHHHHhhhcCChHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHH
Q 046221 393 CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH 444 (572)
Q Consensus 393 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 444 (572)
.|+.-+...++.-+|-++..+....|. -.+..|++...+++|.++-.
T Consensus 1004 ~L~s~L~e~~kh~eAa~il~e~~sd~~-----~av~ll~ka~~~~eAlrva~ 1050 (1265)
T KOG1920|consen 1004 ELVSRLVEQRKHYEAAKILLEYLSDPE-----EAVALLCKAKEWEEALRVAS 1050 (1265)
T ss_pred HHHHHHHHcccchhHHHHHHHHhcCHH-----HHHHHHhhHhHHHHHHHHHH
Confidence 344555556666666666555532222 12233444455555555543
No 238
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.53 E-value=0.13 Score=40.23 Aligned_cols=82 Identities=11% Similarity=0.088 Sum_probs=61.0
Q ss_pred CCCCCcchhhHHHHHhhcCChhhHHHHhccCCC--C----ChhhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchH
Q 046221 1 PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPE--K----NVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTM 74 (572)
Q Consensus 1 p~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 74 (572)
|+..+..+-.-.....+.|++++|++.|+.+.. | ...+.-.++.+|.+.+++++|+..+++.++..-.....-|
T Consensus 6 ~~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdY 85 (142)
T PF13512_consen 6 PDKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDY 85 (142)
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccH
Confidence 344444455566777789999999999999875 2 3456777889999999999999999999886533333456
Q ss_pred HHHHHHHc
Q 046221 75 VGVLVAAA 82 (572)
Q Consensus 75 ~~ll~~~~ 82 (572)
...+.+++
T Consensus 86 a~Y~~gL~ 93 (142)
T PF13512_consen 86 AYYMRGLS 93 (142)
T ss_pred HHHHHHHH
Confidence 66666655
No 239
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.49 E-value=0.61 Score=45.18 Aligned_cols=161 Identities=16% Similarity=0.067 Sum_probs=91.2
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCCh
Q 046221 325 SGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNV 404 (572)
Q Consensus 325 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 404 (572)
+...-.++++++.+....-. .-+..| ......++.-+.+.|-.+.|.++-..- ..-.+...+.|++
T Consensus 269 k~av~~~d~~~v~~~i~~~~-ll~~i~-~~~~~~i~~fL~~~G~~e~AL~~~~D~------------~~rFeLAl~lg~L 334 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASN-LLPNIP-KDQGQSIARFLEKKGYPELALQFVTDP------------DHRFELALQLGNL 334 (443)
T ss_dssp HHHHHTT-HHH-----HHHH-TGGG---HHHHHHHHHHHHHTT-HHHHHHHSS-H------------HHHHHHHHHCT-H
T ss_pred HHHHHcCChhhhhhhhhhhh-hcccCC-hhHHHHHHHHHHHCCCHHHHHhhcCCh------------HHHhHHHHhcCCH
Confidence 34445666666665554211 111111 334556666666667777776664221 1134455677888
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHh
Q 046221 405 DLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEE 484 (572)
Q Consensus 405 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 484 (572)
+.|.++.++. ++...|..|.......|+++-|++.|++..+ |..|+-.|...|+.+...++.+.+. .
T Consensus 335 ~~A~~~a~~~---~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~-~ 401 (443)
T PF04053_consen 335 DIALEIAKEL---DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAE-E 401 (443)
T ss_dssp HHHHHHCCCC---STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH-H
T ss_pred HHHHHHHHhc---CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHH-H
Confidence 8887766655 4667888888888888888888888877664 4556666777777777777776664 3
Q ss_pred cCCCCChhHHHHHHHHHHhhCChhHHHHHHHhcc
Q 046221 485 NKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518 (572)
Q Consensus 485 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 518 (572)
.| -++....++.-.|+.++..+++.+..
T Consensus 402 ~~------~~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 402 RG------DINIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp TT-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred cc------CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 22 14444455566677777777776653
No 240
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.45 E-value=1.4 Score=37.69 Aligned_cols=86 Identities=13% Similarity=0.042 Sum_probs=49.1
Q ss_pred HHHHHHhhhcCChHHHHHHHHHc-------CCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCC-CHHHHHH
Q 046221 392 NCLISSYSKCGNVDLAYIVFEEM-------GFLRD-VVSWNTIIYGYGVNGHGETALALYHKMTETG--EVP-DSSTYLS 460 (572)
Q Consensus 392 ~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g--~~p-~~~~~~~ 460 (572)
......+.+...+++|-..+.+- ..-++ ...|-..|-.|....++..|.+.++.-.+.+ ..| +..+...
T Consensus 154 gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~len 233 (308)
T KOG1585|consen 154 GKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLEN 233 (308)
T ss_pred HHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHH
Confidence 33445566667777666555544 11122 2334555556666777888888887754432 122 4467777
Q ss_pred HHHHHhccCChHHHHHHH
Q 046221 461 ILNACGHAGLTNDGLVIF 478 (572)
Q Consensus 461 l~~~~~~~g~~~~a~~~~ 478 (572)
|+.+| ..|+.+++.+++
T Consensus 234 LL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 234 LLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHh-ccCCHHHHHHHH
Confidence 77776 456666665554
No 241
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.42 E-value=0.58 Score=46.06 Aligned_cols=117 Identities=16% Similarity=0.096 Sum_probs=74.3
Q ss_pred cCChHHHHHHHHHc-CCCCCHhHHHHH-HHHHHhcCChHHHHHHHHHHHhcC--CC-CCHHHHHHHHHHHhccCChHHHH
Q 046221 401 CGNVDLAYIVFEEM-GFLRDVVSWNTI-IYGYGVNGHGETALALYHKMTETG--EV-PDSSTYLSILNACGHAGLTNDGL 475 (572)
Q Consensus 401 ~g~~~~A~~~~~~~-~~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~g--~~-p~~~~~~~l~~~~~~~g~~~~a~ 475 (572)
..+.+.|.++++.+ ..-|+...|... ...+...|++++|++.|++..... .+ .....+.-+...+.-.++|++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 45677888888887 333666555443 344566788888888888765421 11 12345566667778888888888
Q ss_pred HHHHHhHHhcCCCCChhHHHHH-HHHHHhhCCh-------hHHHHHHHhccC
Q 046221 476 VIFNQMIEENKVKPSQEHYGCV-VDLLARAGCL-------SDASGLAGKLLE 519 (572)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~-------~~A~~~~~~~~~ 519 (572)
+.|..+.+.+.. +..+|.-+ ..++...|+. ++|.++|.+...
T Consensus 326 ~~f~~L~~~s~W--Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 326 EYFLRLLKESKW--SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHhcccc--HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 888888765533 33333322 3355667777 777777777654
No 242
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.41 E-value=1.5 Score=37.58 Aligned_cols=51 Identities=18% Similarity=0.229 Sum_probs=29.2
Q ss_pred HHHHHhccCChHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhhCChhHHH
Q 046221 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPS-QEHYGCVVDLLARAGCLSDAS 511 (572)
Q Consensus 461 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~ 511 (572)
+..-|.+.|.+..|..-++.+++...-.+. ......++.+|.+.|..+.|.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 445577777777777777777765411111 124455667777777766443
No 243
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.37 E-value=2.1 Score=39.01 Aligned_cols=164 Identities=10% Similarity=0.035 Sum_probs=95.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCH---hHHHHHHHHhcccccHHHHHHHHHHHHHhcCC-----CchhH
Q 046221 319 SWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDS---ITLVSILTASGELAALEICLQLHGIAFEAGFP-----RYRSV 390 (572)
Q Consensus 319 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~ 390 (572)
+|-.+.+++-+.-++.+++.+-+.-....|..|.. ....++..++...+.++++.+.|+...+.... ....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 44455555555555556655555444333433311 22334555666667778888777766553211 23456
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHc-------CCCCCHhHHH-----HHHHHHHhcCChHHHHHHHHHHHh----cCCCCC
Q 046221 391 QNCLISSYSKCGNVDLAYIVFEEM-------GFLRDVVSWN-----TIIYGYGVNGHGETALALYHKMTE----TGEVPD 454 (572)
Q Consensus 391 ~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~-----~l~~~~~~~~~~~~A~~~~~~~~~----~g~~p~ 454 (572)
+-.|...|.+..++++|.-+..+. ++.-=..-|. .|..++...|....|.+..++..+ .|-.|.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 777788888888888776665544 3211111122 344567777877777777766544 343332
Q ss_pred H-HHHHHHHHHHhccCChHHHHHHHHHhH
Q 046221 455 S-STYLSILNACGHAGLTNDGLVIFNQMI 482 (572)
Q Consensus 455 ~-~~~~~l~~~~~~~g~~~~a~~~~~~~~ 482 (572)
. .....+.+.|-..|+.+.|..-|+.++
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2 445566677888888888888777664
No 244
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.27 E-value=1.5 Score=40.02 Aligned_cols=63 Identities=10% Similarity=-0.012 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc--cC----ChHHHHHHHHHHHHhcC---CCChhHHhHHHH
Q 046221 131 FQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA--LG----SRALCELIHGLTIKLGL---ILDVSVNNSVLD 193 (572)
Q Consensus 131 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~ 193 (572)
+++.+.+++.|.+.|.+-+..+|.+..-.... .. ....+..+++.|.+... .++...+..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA 149 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLA 149 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHh
Confidence 34556788899999988888877664444333 12 34567777888877652 334445555543
No 245
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.13 E-value=2.3 Score=40.78 Aligned_cols=76 Identities=12% Similarity=0.113 Sum_probs=55.8
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC--CCChH--HHHHHHHH
Q 046221 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE--GMGPN--IWRALLSG 532 (572)
Q Consensus 457 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~--~~~~l~~~ 532 (572)
+-..+..++.+.|+.++|++.++++++.....-...+...|++++...+.+.++..++.+..+ -|... .|+..+-.
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 334567778899999999999999987653323445778899999999999999999999754 23333 35554433
No 246
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.08 E-value=0.66 Score=42.23 Aligned_cols=135 Identities=10% Similarity=0.042 Sum_probs=88.1
Q ss_pred hHHHHHHHHHHHHcCCCCCcchHHHHHHHHcC--CC----ChHHHHHHHHHHHHhcCCCCcccCCCCCCceeHHHHHHHH
Q 046221 52 HEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAG--LQ----NLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGF 125 (572)
Q Consensus 52 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~g----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (572)
+++.+.+++.|.+.|++-+..+|.+....... .. ....+..+++.|++..+-.. .++-.++..++..
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLT------s~~D~~~a~lLA~- 150 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLT------SPEDYPFAALLAM- 150 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcccc------CccchhHHHHHhc-
Confidence 45667889999999999998888764433332 23 34578999999999876433 2444455555544
Q ss_pred HhCCCh----HHHHHHHHHHHhCCCCCCHh--hHHHHHHHHhccCC--hHHHHHHHHHHHHhcCCCChhHHhHHHHH
Q 046221 126 INNKLF----QQAVLLFNFFRGSGLVPNAV--TMLTVIRGCVALGS--RALCELIHGLTIKLGLILDVSVNNSVLDM 194 (572)
Q Consensus 126 ~~~~~~----~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 194 (572)
..++. +.+..+|+.+.+.|...+.. ....++..+..... ...+..+++.+.+.|+++....|..+.-.
T Consensus 151 -~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 151 -TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred -ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 33333 56678888888888766544 33333333332222 34678888888899988887777765443
No 247
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.07 E-value=2.6 Score=38.32 Aligned_cols=100 Identities=11% Similarity=-0.042 Sum_probs=55.6
Q ss_pred HHHHHHHHhcccccHH---HHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc--CCCCCHhHHHHHHHH
Q 046221 355 TLVSILTASGELAALE---ICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM--GFLRDVVSWNTIIYG 429 (572)
Q Consensus 355 ~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~ 429 (572)
++..+..++...+..+ +|..+++.+... .+..+.++-.-+..+.+.++.+++.+.+.+| ...-....+...+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 4555555665555443 344444444332 2333444445566666688888888888888 332234455555555
Q ss_pred HHh--cCChHHHHHHHHHHHhcCCCCCH
Q 046221 430 YGV--NGHGETALALYHKMTETGEVPDS 455 (572)
Q Consensus 430 ~~~--~~~~~~A~~~~~~~~~~g~~p~~ 455 (572)
+.. ......|...++.+....+.|..
T Consensus 165 i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 165 IKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 422 23345666777676665566654
No 248
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.93 E-value=1.5 Score=34.88 Aligned_cols=25 Identities=8% Similarity=-0.140 Sum_probs=11.7
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHH
Q 046221 151 VTMLTVIRGCVALGSRALCELIHGL 175 (572)
Q Consensus 151 ~~~~~ll~~~~~~~~~~~a~~~~~~ 175 (572)
.....+++.|.+.+-++.+..++..
T Consensus 70 yd~~~~~~~c~~~~l~~~~~~l~~k 94 (140)
T smart00299 70 YDIEKVGKLCEKAKLYEEAVELYKK 94 (140)
T ss_pred CCHHHHHHHHHHcCcHHHHHHHHHh
Confidence 3334455555555555444444433
No 249
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.84 E-value=0.4 Score=36.37 Aligned_cols=96 Identities=16% Similarity=0.024 Sum_probs=70.9
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChh--HHHHHHHHHHhh
Q 046221 428 YGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQE--HYGCVVDLLARA 504 (572)
Q Consensus 428 ~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~ 504 (572)
-+....|+.+.|++.|.+.+. +.| ....|+.-..++--.|+.++|+.-++++++-.|-+.... .|..-...|...
T Consensus 51 valaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 356788999999999998888 455 558899999999999999999999998887766442222 233334567788
Q ss_pred CChhHHHHHHHhccCCCChHH
Q 046221 505 GCLSDASGLAGKLLEGMGPNI 525 (572)
Q Consensus 505 g~~~~A~~~~~~~~~~~~~~~ 525 (572)
|+.+.|..-|+.+-+-.++..
T Consensus 129 g~dd~AR~DFe~AA~LGS~FA 149 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGSKFA 149 (175)
T ss_pred CchHHHHHhHHHHHHhCCHHH
Confidence 888888888888765333333
No 250
>PRK11906 transcriptional regulator; Provisional
Probab=94.80 E-value=3.4 Score=39.54 Aligned_cols=114 Identities=13% Similarity=0.070 Sum_probs=71.0
Q ss_pred ChHHHHHHHHHc-CC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHhccCChHHHHHHHH
Q 046221 403 NVDLAYIVFEEM-GF-LRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS-STYLSILNACGHAGLTNDGLVIFN 479 (572)
Q Consensus 403 ~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~ 479 (572)
...+|.+.-+.. .+ +-|......+..+....++++.|..+|++... +.||. .+|......+.-.|+.++|.+.++
T Consensus 319 ~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 319 AAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344555555554 22 24566666666666667778888888888887 56765 666666666777788888888888
Q ss_pred HhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC
Q 046221 480 QMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 480 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
++++....+.-..+....++.|+.. ..++|..++-+-.+
T Consensus 397 ~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 435 (458)
T PRK11906 397 KSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLYYKETE 435 (458)
T ss_pred HHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHHhhccc
Confidence 8765443333344444555566543 35666666655443
No 251
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.64 E-value=0.93 Score=34.51 Aligned_cols=87 Identities=15% Similarity=0.130 Sum_probs=66.0
Q ss_pred HHhhhcCChHHHHHHHHHc-C-CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHhccCC
Q 046221 396 SSYSKCGNVDLAYIVFEEM-G-FLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS---STYLSILNACGHAGL 470 (572)
Q Consensus 396 ~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~---~~~~~l~~~~~~~g~ 470 (572)
-+++..|+++.|++.|.+. . .+.....||.-..++.-.|+.++|+.-+++..+..-.-.. ..|..-...|-..|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3567889999999999987 3 3346778999999999999999999999998885211121 334444455778889
Q ss_pred hHHHHHHHHHhH
Q 046221 471 TNDGLVIFNQMI 482 (572)
Q Consensus 471 ~~~a~~~~~~~~ 482 (572)
.+.|..-|+.+-
T Consensus 131 dd~AR~DFe~AA 142 (175)
T KOG4555|consen 131 DDAARADFEAAA 142 (175)
T ss_pred hHHHHHhHHHHH
Confidence 999999888874
No 252
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.62 E-value=0.081 Score=31.92 Aligned_cols=27 Identities=11% Similarity=0.286 Sum_probs=14.6
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhHHh
Q 046221 458 YLSILNACGHAGLTNDGLVIFNQMIEE 484 (572)
Q Consensus 458 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 484 (572)
+..+..+|...|++++|+++|+++++.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444555555555555555555555543
No 253
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.46 E-value=6.7 Score=40.25 Aligned_cols=180 Identities=13% Similarity=0.061 Sum_probs=102.0
Q ss_pred hHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCcccCCCCCCceeHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhh
Q 046221 73 TMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVT 152 (572)
Q Consensus 73 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 152 (572)
+...-|..+++..-++-|..+- +..+.+++. -..........+.+.|++++|..-|-+-... +.|
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LA---k~~~~d~d~-------~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~---- 400 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLA---KSQHLDEDT-------LAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP---- 400 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHH---HhcCCCHHH-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh----
Confidence 3445566666666666665553 222322110 0112223334456778888888777655432 233
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHHHHHHhCCCHHHHHHHHhhcCCCCc-ccHHHHHHHHHccCC
Q 046221 153 MLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDV-ISWTRMMGLFVDFEY 231 (572)
Q Consensus 153 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~li~~~~~~~~ 231 (572)
..++.-+.........-.+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+....... .-....+..+.+.+-
T Consensus 401 -s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~sny 478 (933)
T KOG2114|consen 401 -SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNY 478 (933)
T ss_pred -HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhCh
Confidence 23555566666677777778888888743 445556788899999888888877776652111 124456666666666
Q ss_pred HHHHHHHHHHHHhCCCCCCccchHHHHHHhcccCChHHHHHHHHHH
Q 046221 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQV 277 (572)
Q Consensus 232 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 277 (572)
.++|..+-..... ..... --.+-..+++++|.+.+..+
T Consensus 479 l~~a~~LA~k~~~-----he~vl---~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 479 LDEAELLATKFKK-----HEWVL---DILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHHHhcc-----CHHHH---HHHHHHhcCHHHHHHHHhcC
Confidence 6666665554332 11111 12233456677776666543
No 254
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.44 E-value=1.8 Score=33.92 Aligned_cols=53 Identities=13% Similarity=0.166 Sum_probs=25.3
Q ss_pred hcCChHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHhccCChHHHHHHHHHhHHhc
Q 046221 432 VNGHGETALALYHKMTETGEVP---DSSTYLSILNACGHAGLTNDGLVIFNQMIEEN 485 (572)
Q Consensus 432 ~~~~~~~A~~~~~~~~~~g~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 485 (572)
+.|++++|.+.|+.+... .+. ....-..|+.+|.+.|++++|...+++.++.+
T Consensus 22 ~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 445555555555555443 111 12333444555555555555555555555444
No 255
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.43 E-value=3.2 Score=36.37 Aligned_cols=156 Identities=19% Similarity=0.129 Sum_probs=69.8
Q ss_pred HHHHHHhhhcCChHHHHHHHHHc-CCCCCH-hHHHHHHH-HHHhcCChHHHHHHHHHHHhcCCCC----CHHHHHHHHHH
Q 046221 392 NCLISSYSKCGNVDLAYIVFEEM-GFLRDV-VSWNTIIY-GYGVNGHGETALALYHKMTETGEVP----DSSTYLSILNA 464 (572)
Q Consensus 392 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~-~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~g~~p----~~~~~~~l~~~ 464 (572)
......+...+++..+.+.+... ...++. ........ .+...|+++.|...+.+... ..| ....+......
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 176 (291)
T COG0457 99 LNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGAL 176 (291)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhH
Confidence 33344444444455555555544 111111 11122222 45555555566555555543 222 11223333333
Q ss_pred HhccCChHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhhCChhHHHHHHHhccC-CCC-hHHHHHHHHHHhhhcCCHH
Q 046221 465 CGHAGLTNDGLVIFNQMIEENKVKP-SQEHYGCVVDLLARAGCLSDASGLAGKLLE-GMG-PNIWRALLSGCVLHVGRFQ 541 (572)
Q Consensus 465 ~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~~g~~~ 541 (572)
+...++.+.+...+..+++.. +. ....+..+...+...++++.|...+..... .|+ ...+..+...+. ..|.++
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 253 (291)
T COG0457 177 LEALGRYEEALELLEKALKLN--PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLL-ELGRYE 253 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhC--cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHH-HcCCHH
Confidence 445555666666555554322 22 234455555555555556666665555554 222 233333333333 225555
Q ss_pred HHHHHHHHHHh
Q 046221 542 DAEALRSGSQK 552 (572)
Q Consensus 542 ~A~~~~~~m~~ 552 (572)
++...+.+..+
T Consensus 254 ~~~~~~~~~~~ 264 (291)
T COG0457 254 EALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 256
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.39 E-value=0.13 Score=31.02 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=12.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 046221 423 WNTIIYGYGVNGHGETALALYHKMTE 448 (572)
Q Consensus 423 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 448 (572)
|..+...|...|++++|+++|+++++
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444455555555555555444
No 257
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.19 E-value=4.7 Score=37.36 Aligned_cols=283 Identities=14% Similarity=0.053 Sum_probs=173.9
Q ss_pred cccCChHHHHHHHHHHHHhCCCCCcchHHHHHH--HHHhcCChhHHHHHHhccCC-CCcc--hHHHHHHHHHHcCChHHH
Q 046221 262 AILGDLKRGKQLHAQVVLGGLQSELRLSNSIIA--MYSKCGDLDSSRSVFNQITE-KSLV--SWTAIISGYVQNGCAREA 336 (572)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~-~~~~--~~~~l~~~~~~~~~~~~a 336 (572)
...||-..|.+.-.+..+. +..|....-.++. +-.-.|+++.|.+-|+.|.. |... -...|.-.-.+.|+.+.|
T Consensus 95 agAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 95 AGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred hccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHH
Confidence 3457777777766554421 1222222222332 23446999999999999985 2221 122233333567888888
Q ss_pred HHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhc-CCCchhHH--HHHHHHhh---hcCChHHHHHH
Q 046221 337 LNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG-FPRYRSVQ--NCLISSYS---KCGNVDLAYIV 410 (572)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~--~~l~~~~~---~~g~~~~A~~~ 410 (572)
.++-++.- ..-+.-.......+...+..|+++.|+++.+.-.... +.++..-- ..|+.+-. -..+...|...
T Consensus 174 r~yAe~Aa--~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~ 251 (531)
T COG3898 174 RHYAERAA--EKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD 251 (531)
T ss_pred HHHHHHHH--hhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 88887774 2233345678889999999999999999998766543 33332211 12222111 12345566655
Q ss_pred HHHc-CCCCCHhHH-HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCC
Q 046221 411 FEEM-GFLRDVVSW-NTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVK 488 (572)
Q Consensus 411 ~~~~-~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 488 (572)
-.+. .+.||...- ..-..++.+.|+..++-.+++.+-+. .|........+ +.+.|+ .++.=++++.+-..++
T Consensus 252 A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--ePHP~ia~lY~--~ar~gd--ta~dRlkRa~~L~slk 325 (531)
T COG3898 252 ALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA--EPHPDIALLYV--RARSGD--TALDRLKRAKKLESLK 325 (531)
T ss_pred HHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--CCChHHHHHHH--HhcCCC--cHHHHHHHHHHHHhcC
Confidence 5554 666774433 33456789999999999999999985 45444333322 345554 3333333332222234
Q ss_pred CC-hhHHHHHHHHHHhhCChhHHHHHHHhccC-CCChHHHHHHHHHHhhhcCCHHHHHHHHHHHHhC
Q 046221 489 PS-QEHYGCVVDLLARAGCLSDASGLAGKLLE-GMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKK 553 (572)
Q Consensus 489 ~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~g~~~~A~~~~~~m~~~ 553 (572)
|+ .+....+.++-...|++..|..--+.... .|....|..|...--...|+-.++...+-+..+.
T Consensus 326 ~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 326 PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 44 45666778888899999999887777665 7777777776665544458888888877765443
No 258
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.07 E-value=6.6 Score=38.66 Aligned_cols=128 Identities=9% Similarity=0.066 Sum_probs=86.3
Q ss_pred ceeHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhH-HHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHHH
Q 046221 115 LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTM-LTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLD 193 (572)
Q Consensus 115 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 193 (572)
-..|..+|..--...+.+.+..++..+... .|-..-| ......=.+.|..+.+.++|+..+. |++.+...|...+.
T Consensus 45 f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 45 FDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLA 121 (577)
T ss_pred ccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHH
Confidence 345666666555555566677777777653 5555433 3333334567888888888888876 45677777777665
Q ss_pred HHH-hCCCHHHHHHHHhhcCC------CCcccHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 046221 194 MYS-CLMDLDAAIQIFREMEC------KDVISWTRMMGLFVDFEYAGDALKIFREMRKS 245 (572)
Q Consensus 194 ~~~-~~~~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 245 (572)
.++ ..|+.+.....|+.... .....|...|..-..++++.....+|++.++.
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 544 35666777777776654 35567888888888888888888888888764
No 259
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.99 E-value=0.85 Score=39.94 Aligned_cols=98 Identities=12% Similarity=-0.036 Sum_probs=56.9
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCcccCCCCCCceeHHHHHHHHHhCCChHHHHHHHHHHHhCCC-CC-CHh
Q 046221 74 MVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGL-VP-NAV 151 (572)
Q Consensus 74 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p-~~~ 151 (572)
|+.-+..+ +.|++..|...|...++..+... -....+..|...+...|++++|..+|..+.+.-. .| -..
T Consensus 145 Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~-------~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApd 216 (262)
T COG1729 145 YNAALDLY-KSGDYAEAEQAFQAFIKKYPNST-------YTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPD 216 (262)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCc-------ccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChH
Confidence 55555443 55667777777777766665432 2233555667777777777777777766665411 11 123
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHh
Q 046221 152 TMLTVIRGCVALGSRALCELIHGLTIKL 179 (572)
Q Consensus 152 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 179 (572)
++..|.....+.|+.+.|..+|+++.+.
T Consensus 217 allKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 217 ALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4555555556666666666666666654
No 260
>PRK11906 transcriptional regulator; Provisional
Probab=93.83 E-value=1.6 Score=41.57 Aligned_cols=142 Identities=11% Similarity=0.053 Sum_probs=97.6
Q ss_pred ChHHHHHHHHHc----CCCCC-HhHHHHHHHHHHh---------cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhcc
Q 046221 403 NVDLAYIVFEEM----GFLRD-VVSWNTIIYGYGV---------NGHGETALALYHKMTETGEVPDSSTYLSILNACGHA 468 (572)
Q Consensus 403 ~~~~A~~~~~~~----~~~~~-~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 468 (572)
..+.|..+|.+. ...|+ ...|..+..++.. ..+..+|.++-++..+.+ .-|......+..+..-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 467788888877 44454 5556666555432 123456777788888743 33778888888888888
Q ss_pred CChHHHHHHHHHhHHhcCCCCChh-HHHHHHHHHHhhCChhHHHHHHHhccC-CCChH---HHHHHHHHHhhhcCCHHHH
Q 046221 469 GLTNDGLVIFNQMIEENKVKPSQE-HYGCVVDLLARAGCLSDASGLAGKLLE-GMGPN---IWRALLSGCVLHVGRFQDA 543 (572)
Q Consensus 469 g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~---~~~~l~~~~~~~~g~~~~A 543 (572)
++++.|...|+++..- .|+.. .|........-.|+.++|.+.+++..+ .|... .....+..|+ . ...++|
T Consensus 352 ~~~~~a~~~f~rA~~L---~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~-~-~~~~~~ 426 (458)
T PRK11906 352 GQAKVSHILFEQAKIH---STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYV-P-NPLKNN 426 (458)
T ss_pred cchhhHHHHHHHHhhc---CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHc-C-Cchhhh
Confidence 8999999999998753 45543 555555666778999999999999776 55433 2333333443 3 688899
Q ss_pred HHHHHHH
Q 046221 544 EALRSGS 550 (572)
Q Consensus 544 ~~~~~~m 550 (572)
+.++-+-
T Consensus 427 ~~~~~~~ 433 (458)
T PRK11906 427 IKLYYKE 433 (458)
T ss_pred HHHHhhc
Confidence 9988763
No 261
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.68 E-value=3.4 Score=39.66 Aligned_cols=73 Identities=18% Similarity=0.159 Sum_probs=45.9
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHHc-CCCCC---HhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH--HHHHHHH
Q 046221 389 SVQNCLISSYSKCGNVDLAYIVFEEM-GFLRD---VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS--STYLSIL 462 (572)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~--~~~~~l~ 462 (572)
.+-..+..+..+.|+.++|.+.+.++ ...|. ......|+.++...+.+.++..++.+--+.. -|.+ .+|+..+
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~-lpkSAti~YTaAL 338 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS-LPKSATICYTAAL 338 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc-CCchHHHHHHHHH
Confidence 33345666667778888888888877 22232 3345567788888888888888887765432 3333 4455433
No 262
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.53 E-value=2.1 Score=38.60 Aligned_cols=149 Identities=5% Similarity=-0.113 Sum_probs=70.1
Q ss_pred hCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHh---cCCCChhHHhHHHHHHHhCCCHHH
Q 046221 127 NNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKL---GLILDVSVNNSVLDMYSCLMDLDA 203 (572)
Q Consensus 127 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~ 203 (572)
..|+..+|...++++.+. .+.|...+...-.+|.-.|+...-...++.++.. +++-...+-..+.-++..+|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 345555555555555544 2334445555555555556555555555555432 111111222222333445566666
Q ss_pred HHHHHhhcCCC---CcccHHHHHHHHHccCCHHHHHHHHHHHHhC---CCCCCccchHHHHHHhcccCChHHHHHHHHH
Q 046221 204 AIQIFREMECK---DVISWTRMMGLFVDFEYAGDALKIFREMRKS---RIICDTVALLNLISVNAILGDLKRGKQLHAQ 276 (572)
Q Consensus 204 a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 276 (572)
|++.-++..+- |..+-.++...+-.++++.++.+++.+-... +-..-..-|-...-.+...+.++.|..+|+.
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 66666555442 2233334444455556666666655543221 1001112233333344444666666666654
No 263
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.44 E-value=2.8 Score=32.19 Aligned_cols=57 Identities=16% Similarity=0.147 Sum_probs=25.0
Q ss_pred HHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhcc
Q 046221 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518 (572)
Q Consensus 460 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 518 (572)
..+......|+-|...+++.++.+ + -.+++.....+..+|.+.|+..+|.+++.++.
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~k-n-~~~~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKK-N-EEINPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHhh-c-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 334444455555555555555432 1 23444455555555555555555555555443
No 264
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.08 E-value=5.6 Score=34.73 Aligned_cols=53 Identities=17% Similarity=0.122 Sum_probs=27.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCcc---chHHHHHHhcccCChHHHHHHHH
Q 046221 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTV---ALLNLISVNAILGDLKRGKQLHA 275 (572)
Q Consensus 222 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~ 275 (572)
+.+.|.+.|.+..|..-+++|.+. .+-+.. .+-.+..++...|-.++|...-+
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~ 228 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAK 228 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 445666777777777777777665 222222 22233344455555555544433
No 265
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.73 E-value=4.2 Score=32.32 Aligned_cols=84 Identities=10% Similarity=0.043 Sum_probs=38.4
Q ss_pred HHHHHhcccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHHHHcCChHH
Q 046221 256 NLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335 (572)
Q Consensus 256 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 335 (572)
.++..+...+.......+++.+...+ ..+....+.++..|++.+ .++....+.. ..+......++..+.+.+.+++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~ 87 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEE 87 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHH
Confidence 34444444444555555555555444 244445555665555542 2233333331 1222333344455555555555
Q ss_pred HHHHHHHH
Q 046221 336 ALNQFIKM 343 (572)
Q Consensus 336 a~~~~~~~ 343 (572)
+.-++.++
T Consensus 88 ~~~l~~k~ 95 (140)
T smart00299 88 AVELYKKD 95 (140)
T ss_pred HHHHHHhh
Confidence 55555444
No 266
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=92.58 E-value=12 Score=37.08 Aligned_cols=176 Identities=10% Similarity=-0.005 Sum_probs=85.3
Q ss_pred chHHHHHHHHHhcCChhHHHHHHhccCCCCc---chHHHHHHHHHHcCChHHHHHHHHHHHhcCC--CCCCHhHHHHHHH
Q 046221 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEKSL---VSWTAIISGYVQNGCAREALNQFIKMRQEKT--DSVDSITLVSILT 361 (572)
Q Consensus 287 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~ll~ 361 (572)
.+|...+..-.+.|+.+.+.-+|++..-|-. ..|-..+.-....|+.+-|..++.... +-- ..|....+.+.
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~-~i~~k~~~~i~L~~a~-- 374 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARAC-KIHVKKTPIIHLLEAR-- 374 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhh-hhcCCCCcHHHHHHHH--
Confidence 4556666666677777777777776654321 234444444444466666665555443 211 22222222222
Q ss_pred HhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHH---HHHHHc-CCCCCHhHHHHHHHH-----HHh
Q 046221 362 ASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY---IVFEEM-GFLRDVVSWNTIIYG-----YGV 432 (572)
Q Consensus 362 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~~~~~~~~~l~~~-----~~~ 432 (572)
.+-..|++..|..+++.+...- +--...-..-+....+.|..+.+. .++... ....+....+.+.-- +.-
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i 453 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKI 453 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHH
Confidence 2334567777777777666553 222222222334445566666665 333333 111222222222211 222
Q ss_pred cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Q 046221 433 NGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467 (572)
Q Consensus 433 ~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 467 (572)
.++.+.|..++.++.+. .+++...|..+++-+..
T Consensus 454 ~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~ 487 (577)
T KOG1258|consen 454 REDADLARIILLEANDI-LPDCKVLYLELIRFELI 487 (577)
T ss_pred hcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHh
Confidence 45667777777777763 33344556566554443
No 267
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.55 E-value=5 Score=32.75 Aligned_cols=134 Identities=10% Similarity=0.045 Sum_probs=84.6
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHHHHHHhCC--CHHHHHHHHhhcC
Q 046221 135 VLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLM--DLDAAIQIFREME 212 (572)
Q Consensus 135 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~ 212 (572)
.+.++.+.+.++.|+...|..++..+.+.|.+.. +.+++..++-+|.......+-.+.... -..-|.+.+.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 4566777778899999999999999999998654 445556666666555444433332211 1333444444442
Q ss_pred CCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCccchHHHHHHhcccCChHHHHHHHHHHHHh
Q 046221 213 CKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLG 280 (572)
Q Consensus 213 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 280 (572)
..+..++..+...|++-+|+++.+..... +......++.+..+.+|...-..+++-....
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34667788889999999999998875322 2233355666666666666555555555443
No 268
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.53 E-value=1.8 Score=35.97 Aligned_cols=97 Identities=13% Similarity=0.061 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHhccCChHHHHHHHHHhHHhcCC--CCChh----
Q 046221 421 VSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS--STYLSILNACGHAGLTNDGLVIFNQMIEENKV--KPSQE---- 492 (572)
Q Consensus 421 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~---- 492 (572)
..+..+...|.+.|+.+.|.+.|.++.+....|.. ..+..+++.....|++..+...+.++...... +++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 45667777788888888888888888776555543 45666777777788888887777766322111 11111
Q ss_pred HHHHHHHHHHhhCChhHHHHHHHhccC
Q 046221 493 HYGCVVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 493 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
.|..| .+...+++.+|-+.|-....
T Consensus 117 ~~~gL--~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGL--ANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHH--HHHHhchHHHHHHHHHccCc
Confidence 22222 23456788888887776654
No 269
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.50 E-value=1.5 Score=39.86 Aligned_cols=225 Identities=12% Similarity=-0.009 Sum_probs=139.3
Q ss_pred HHHcCChHHHHHHHHHHHhcCCC-CCCHhHHHHHHHHhcccccHHHHHHHHHHHHHh--cCCCch---hHHHHHHHHhhh
Q 046221 327 YVQNGCAREALNQFIKMRQEKTD-SVDSITLVSILTASGELAALEICLQLHGIAFEA--GFPRYR---SVQNCLISSYSK 400 (572)
Q Consensus 327 ~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~---~~~~~l~~~~~~ 400 (572)
+....+.++|+..|.+....... .....++..+..+.++.|.++++..+--..... ...... ..|-.+..++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788888888877633222 223357777888888888888877653211111 111121 233344445555
Q ss_pred cCChHHHHHHHHHc----CCCCC---HhHHHHHHHHHHhcCChHHHHHHHHHHHhcCC---CC--CHHHHHHHHHHHhcc
Q 046221 401 CGNVDLAYIVFEEM----GFLRD---VVSWNTIIYGYGVNGHGETALALYHKMTETGE---VP--DSSTYLSILNACGHA 468 (572)
Q Consensus 401 ~g~~~~A~~~~~~~----~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~---~p--~~~~~~~l~~~~~~~ 468 (572)
..++.+++.+-..- |..|. -....++..++...+.++++++.|+...+--- .| ....+..|...|...
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 55556665555443 22221 12234466677777889999999988766311 12 235788888999999
Q ss_pred CChHHHHHHHHHhHH---hcCCCCCh-----hHHHHHHHHHHhhCChhHHHHHHHhccC----CCChHHH----HHHHHH
Q 046221 469 GLTNDGLVIFNQMIE---ENKVKPSQ-----EHYGCVVDLLARAGCLSDASGLAGKLLE----GMGPNIW----RALLSG 532 (572)
Q Consensus 469 g~~~~a~~~~~~~~~---~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~----~~l~~~ 532 (572)
.++++|.-+..++.+ ..++..-. .....+..++...|...+|.+.-++..+ ..|..++ ..+...
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 999999988876643 22322111 1344555678899999999999999887 3444443 344455
Q ss_pred HhhhcCCHHHHHHHHHHHHh
Q 046221 533 CVLHVGRFQDAEALRSGSQK 552 (572)
Q Consensus 533 ~~~~~g~~~~A~~~~~~m~~ 552 (572)
|... |+.+.|..-++....
T Consensus 256 yR~~-gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 256 YRSR-GDLERAFRRYEQAMG 274 (518)
T ss_pred HHhc-ccHhHHHHHHHHHHH
Confidence 5555 999999998887654
No 270
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.49 E-value=5.2 Score=34.27 Aligned_cols=14 Identities=29% Similarity=0.254 Sum_probs=7.8
Q ss_pred ChHHHHHHHHHHHh
Q 046221 435 HGETALALYHKMTE 448 (572)
Q Consensus 435 ~~~~A~~~~~~~~~ 448 (572)
++++|...++..++
T Consensus 88 ~~~eAv~cL~~aie 101 (288)
T KOG1586|consen 88 DPEEAVNCLEKAIE 101 (288)
T ss_pred ChHHHHHHHHHHHH
Confidence 55666655555444
No 271
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.48 E-value=6.9 Score=34.23 Aligned_cols=47 Identities=11% Similarity=0.076 Sum_probs=21.6
Q ss_pred ChHHHHHHHHHHHHhCCCCCcc---hHHHHHHHHHhcCChhHHHHHHhcc
Q 046221 266 DLKRGKQLHAQVVLGGLQSELR---LSNSIIAMYSKCGDLDSSRSVFNQI 312 (572)
Q Consensus 266 ~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~ 312 (572)
.+++|..-|...++..-..... ....++..+.+.|++++....+.++
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~ql 91 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQL 91 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 4555666555555433222221 2223344455555555555544444
No 272
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.45 E-value=1.6 Score=38.87 Aligned_cols=76 Identities=17% Similarity=0.299 Sum_probs=35.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhH----HhcCCCCChhHHHHH
Q 046221 423 WNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNACGHAGLTNDGLVIFNQMI----EENKVKPSQEHYGCV 497 (572)
Q Consensus 423 ~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~~l 497 (572)
+..++..+...|+.+.+...++++... .| +...|..++.+|.+.|+...|+..|+.+. +..|+.|...+...+
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~--dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIEL--DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 334444444455555555555555542 23 44455555555555555555555444432 124455555544444
Q ss_pred HHH
Q 046221 498 VDL 500 (572)
Q Consensus 498 ~~~ 500 (572)
.++
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 333
No 273
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.40 E-value=7.8 Score=34.65 Aligned_cols=139 Identities=14% Similarity=0.126 Sum_probs=78.0
Q ss_pred hcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHcCCCCCHhHHHH---HHHHHHhcCChHHH
Q 046221 363 SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNT---IIYGYGVNGHGETA 439 (572)
Q Consensus 363 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~A 439 (572)
....++...+...++...... +-+...--.+..+|...|+.+.|..++..++..-....+.. -+..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 345566666666666555543 22344445577888888888888888888843332222222 23334444444433
Q ss_pred HHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhC
Q 046221 440 LALYHKMTETGEVP-DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAG 505 (572)
Q Consensus 440 ~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 505 (572)
..+-.+.-. .| |...-..+...+...|+.++|.+.+=.++++..---|...-..|++.+.--|
T Consensus 223 ~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 223 QDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 344444333 45 5566666777778888888887766665544322234444445555544444
No 274
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.36 E-value=5.8 Score=33.54 Aligned_cols=179 Identities=17% Similarity=0.153 Sum_probs=99.9
Q ss_pred hcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc-CCCCCHhHHHHHHH--HHHhcCChHHH
Q 046221 363 SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFLRDVVSWNTIIY--GYGVNGHGETA 439 (572)
Q Consensus 363 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~--~~~~~~~~~~A 439 (572)
|-..|-...|.-=|....... |.-+.+||-+.--+...|+++.|.+.|+.. ...|. .-|..+=+ ++--.|++.-|
T Consensus 75 YDSlGL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~-y~Ya~lNRgi~~YY~gR~~LA 152 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRYKLA 152 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc-chHHHhccceeeeecCchHhh
Confidence 455566666665555554432 334677888888888899999999999887 44443 12322222 23346888888
Q ss_pred HHHHHHHHhcCCCCCH--HHHHHHHHHHhccCChHHHHHHHH-HhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHh
Q 046221 440 LALYHKMTETGEVPDS--STYLSILNACGHAGLTNDGLVIFN-QMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK 516 (572)
Q Consensus 440 ~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 516 (572)
.+-+...-+.. +.|+ ..|..+.. ..-++.+|..-+. +. + ..|..-|...+-.|. .|++.+ ..++++
T Consensus 153 q~d~~~fYQ~D-~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~-~----~~d~e~WG~~iV~~y-LgkiS~-e~l~~~ 221 (297)
T COG4785 153 QDDLLAFYQDD-PNDPFRSLWLYLNE---QKLDPKQAKTNLKQRA-E----KSDKEQWGWNIVEFY-LGKISE-ETLMER 221 (297)
T ss_pred HHHHHHHHhcC-CCChHHHHHHHHHH---hhCCHHHHHHHHHHHH-H----hccHhhhhHHHHHHH-HhhccH-HHHHHH
Confidence 88777776642 1132 22322322 3345666665443 33 2 345555654443332 232221 233444
Q ss_pred ccC-CCC--------hHHHHHHHHHHhhhcCCHHHHHHHHHHHHhCCC
Q 046221 517 LLE-GMG--------PNIWRALLSGCVLHVGRFQDAEALRSGSQKKGI 555 (572)
Q Consensus 517 ~~~-~~~--------~~~~~~l~~~~~~~~g~~~~A~~~~~~m~~~~~ 555 (572)
+.. .-+ ..+|--|..-+... |+.++|..+|+-....++
T Consensus 222 ~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~-G~~~~A~~LfKLaiannV 268 (297)
T COG4785 222 LKADATDNTSLAEHLTETYFYLGKYYLSL-GDLDEATALFKLAVANNV 268 (297)
T ss_pred HHhhccchHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhH
Confidence 433 112 22444455555555 999999999998776554
No 275
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.33 E-value=7.9 Score=34.59 Aligned_cols=138 Identities=12% Similarity=-0.014 Sum_probs=81.5
Q ss_pred HHhhhcCChHHHHHHHHHc--CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHH
Q 046221 396 SSYSKCGNVDLAYIVFEEM--GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTND 473 (572)
Q Consensus 396 ~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~ 473 (572)
......|++.+|...|+.. ..+-+...--.++.+|...|+.+.|..++..+...--.........-+..+.+.....+
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 3455678888888888877 22223455566778888888888888888876653211122222222333444444444
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC----CCChHHHHHHHHHHhhh
Q 046221 474 GLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE----GMGPNIWRALLSGCVLH 536 (572)
Q Consensus 474 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~l~~~~~~~ 536 (572)
...+-.+. ... +-|...-..+...+...|+.++|.+.+=.+.. .-|...-..++..+-..
T Consensus 222 ~~~l~~~~-aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~ 285 (304)
T COG3118 222 IQDLQRRL-AAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAF 285 (304)
T ss_pred HHHHHHHH-HhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhc
Confidence 44444444 222 33666677778888888888888876665544 33444555555555444
No 276
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.33 E-value=2.4 Score=37.85 Aligned_cols=100 Identities=13% Similarity=0.211 Sum_probs=65.7
Q ss_pred hcCCCchhHHHHHHHHhhhcCChHHHHHHHHHcCCCCC--------HhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 046221 382 AGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRD--------VVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453 (572)
Q Consensus 382 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p 453 (572)
.|.+....+...++..-....+++.++..+-++...|+ ..+|-.++ -.-++++++.++..=++-|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhcccc
Confidence 45555555556666666666777777777777633232 22222222 2235677777777777788888
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhHHhc
Q 046221 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIEEN 485 (572)
Q Consensus 454 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 485 (572)
|..+++.+++.+.+.+++.+|.++...|+...
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 88888888888888888888888777766443
No 277
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.23 E-value=1.6 Score=38.89 Aligned_cols=76 Identities=18% Similarity=0.221 Sum_probs=63.5
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHHc--CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHh-----cCCCCCHHHHHHH
Q 046221 389 SVQNCLISSYSKCGNVDLAYIVFEEM--GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTE-----TGEVPDSSTYLSI 461 (572)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~g~~p~~~~~~~l 461 (572)
.++..++..+...|+.+.+.+.++++ -.+-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45567888899999999999999998 4445788999999999999999999999998876 5788887776666
Q ss_pred HHH
Q 046221 462 LNA 464 (572)
Q Consensus 462 ~~~ 464 (572)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 655
No 278
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.22 E-value=7 Score=33.76 Aligned_cols=142 Identities=15% Similarity=0.086 Sum_probs=68.5
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-----CHHHHHHHHHHH
Q 046221 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP-----DSSTYLSILNAC 465 (572)
Q Consensus 391 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-----~~~~~~~l~~~~ 465 (572)
|+--...|..+|..+.|-..+++.+. ...+.+++.|+.+|++...-=..- -...+..+.+.+
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleKAak-------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~l 160 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEKAAK-------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVL 160 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHH-------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHh
Confidence 33344555666665555555554410 122334555555555543310000 112233344456
Q ss_pred hccCChHHHHHHHHHhHH---hcCCCCCh-hHHHHHHHHHHhhCChhHHHHHHHhccC------CCChHHHHHHHHHHhh
Q 046221 466 GHAGLTNDGLVIFNQMIE---ENKVKPSQ-EHYGCVVDLLARAGCLSDASGLAGKLLE------GMGPNIWRALLSGCVL 535 (572)
Q Consensus 466 ~~~g~~~~a~~~~~~~~~---~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~l~~~~~~ 535 (572)
.+..++++|-..+.+-.. ...--++. ..|...|-.+....++..|...++.-.+ ..+..+...|+.+|-
T Consensus 161 Vrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd- 239 (308)
T KOG1585|consen 161 VRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD- 239 (308)
T ss_pred hhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-
Confidence 666666665554432210 00001222 2344455556666777777777777433 334446667777763
Q ss_pred hcCCHHHHHHHH
Q 046221 536 HVGRFQDAEALR 547 (572)
Q Consensus 536 ~~g~~~~A~~~~ 547 (572)
. |+.+++..++
T Consensus 240 ~-gD~E~~~kvl 250 (308)
T KOG1585|consen 240 E-GDIEEIKKVL 250 (308)
T ss_pred c-CCHHHHHHHH
Confidence 3 6777766554
No 279
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.18 E-value=0.3 Score=27.83 Aligned_cols=24 Identities=8% Similarity=0.087 Sum_probs=13.9
Q ss_pred HHHHHHHHhccCChHHHHHHHHHh
Q 046221 458 YLSILNACGHAGLTNDGLVIFNQM 481 (572)
Q Consensus 458 ~~~l~~~~~~~g~~~~a~~~~~~~ 481 (572)
|..|...|.+.|++++|+++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455566666666666666666653
No 280
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.15 E-value=1.8 Score=34.76 Aligned_cols=78 Identities=15% Similarity=-0.022 Sum_probs=51.6
Q ss_pred hHHHHHHHH---HHhcCChHHHHHHHHHHHhcCCCCCHHHHHH-HHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHH
Q 046221 421 VSWNTIIYG---YGVNGHGETALALYHKMTETGEVPDSSTYLS-ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGC 496 (572)
Q Consensus 421 ~~~~~l~~~---~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 496 (572)
...+.|+.. -.+.++.+.+..+++.+.- +.|....... -...+...|++.+|+.+|+++.+.. |....-..
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~---~~~p~~kA 82 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA---PGFPYAKA 82 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC---CCChHHHH
Confidence 344444444 4567899999999999988 6787644333 3445788999999999999985433 44444444
Q ss_pred HHHHHHh
Q 046221 497 VVDLLAR 503 (572)
Q Consensus 497 l~~~~~~ 503 (572)
|+..|..
T Consensus 83 LlA~CL~ 89 (160)
T PF09613_consen 83 LLALCLY 89 (160)
T ss_pred HHHHHHH
Confidence 5444443
No 281
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.10 E-value=4.2 Score=32.14 Aligned_cols=51 Identities=10% Similarity=-0.029 Sum_probs=36.0
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHhccCChHHHHHHHHHhHH
Q 046221 431 GVNGHGETALALYHKMTETGEVPDSST-YLSILNACGHAGLTNDGLVIFNQMIE 483 (572)
Q Consensus 431 ~~~~~~~~A~~~~~~~~~~g~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~ 483 (572)
...++++++..+++.|.- +.|+..- -..-...+...|++++|+++|++..+
T Consensus 21 L~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRV--LRPNLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred HhcCCHHHHHHHHHHHHH--hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 347888888888888887 5775532 22233456788888888888888854
No 282
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.10 E-value=5.5 Score=32.30 Aligned_cols=91 Identities=15% Similarity=0.078 Sum_probs=50.9
Q ss_pred HHhhhcCChHHHHHHHHHc-CCCCCHhHHHH---H--HHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccC
Q 046221 396 SSYSKCGNVDLAYIVFEEM-GFLRDVVSWNT---I--IYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAG 469 (572)
Q Consensus 396 ~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~---l--~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 469 (572)
......|+...|...|+++ ...|.+....- | .-.+..+|.++......+.+...|-+.....-..|.-+-.+.|
T Consensus 102 t~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kag 181 (221)
T COG4649 102 TLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAG 181 (221)
T ss_pred HHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhcc
Confidence 3455667777777777777 22222222211 1 1224556677766666665555443333344555666666777
Q ss_pred ChHHHHHHHHHhHHhcC
Q 046221 470 LTNDGLVIFNQMIEENK 486 (572)
Q Consensus 470 ~~~~a~~~~~~~~~~~~ 486 (572)
++..|.+.|..+..+.+
T Consensus 182 d~a~A~~~F~qia~Da~ 198 (221)
T COG4649 182 DFAKAKSWFVQIANDAQ 198 (221)
T ss_pred chHHHHHHHHHHHcccc
Confidence 77777777777765443
No 283
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.00 E-value=4.5 Score=31.09 Aligned_cols=137 Identities=18% Similarity=0.169 Sum_probs=73.4
Q ss_pred HHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHH---hHHHHHHHhCCCH
Q 046221 125 FINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVN---NSVLDMYSCLMDL 201 (572)
Q Consensus 125 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~ 201 (572)
+.-.|..++..+++.+...+ .+..-||.+|--....-+-+...+.++ ..|--.|.... ..++.+|++.|..
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~Ld---sIGkiFDis~C~NlKrVi~C~~~~n~~ 85 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLD---SIGKIFDISKCGNLKRVIECYAKRNKL 85 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHH---HHGGGS-GGG-S-THHHHHHHHHTT--
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHH---HHhhhcCchhhcchHHHHHHHHHhcch
Confidence 34567777777777777653 244555555544443333333333333 33433333322 2334444444432
Q ss_pred HHHHHHHhhcCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCccchHHHHHHhcccCChHHHHHHHHHHHHhC
Q 046221 202 DAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281 (572)
Q Consensus 202 ~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 281 (572)
.......+..+...|+-+.-.+++.++.+. -.+++.....+..+|.+.|+..++..++.++-+.|
T Consensus 86 --------------se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 86 --------------SEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp ---------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred --------------HHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 223445567777888888888888887653 35677777777788888888888888887777766
Q ss_pred C
Q 046221 282 L 282 (572)
Q Consensus 282 ~ 282 (572)
+
T Consensus 151 ~ 151 (161)
T PF09205_consen 151 L 151 (161)
T ss_dssp -
T ss_pred h
Confidence 3
No 284
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.95 E-value=0.21 Score=28.00 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=12.2
Q ss_pred CChhHHHHHHHHHHhhCChhHHH
Q 046221 489 PSQEHYGCVVDLLARAGCLSDAS 511 (572)
Q Consensus 489 ~~~~~~~~l~~~~~~~g~~~~A~ 511 (572)
-+...|..+...|...|++++|+
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhhc
Confidence 34445555555555555555553
No 285
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.92 E-value=3.1 Score=34.62 Aligned_cols=107 Identities=12% Similarity=0.025 Sum_probs=72.0
Q ss_pred HHHHHhcCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCh--hHHHHHHHHHHhhCChhHHHHHHHhccC
Q 046221 443 YHKMTETGEVPDS-STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQ--EHYGCVVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 443 ~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
++...+..++-+. ..+..+..-|.+.|+.+.|.+.|.++. .....+.. ..+-.++......|++..+...+.++..
T Consensus 23 lk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~-~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 23 LKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRAR-DYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh-hhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3333344344443 678889999999999999999999985 44344443 3667788888999999999999988776
Q ss_pred ---CCC-hHHHH---HHHHHHhhhcCCHHHHHHHHHHH
Q 046221 520 ---GMG-PNIWR---ALLSGCVLHVGRFQDAEALRSGS 550 (572)
Q Consensus 520 ---~~~-~~~~~---~l~~~~~~~~g~~~~A~~~~~~m 550 (572)
.+. ...-+ ..-..+....+++.+|.+.|-..
T Consensus 102 ~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 102 LIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHcc
Confidence 222 22111 11111222349999999888764
No 286
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.88 E-value=5.7 Score=31.97 Aligned_cols=111 Identities=17% Similarity=0.152 Sum_probs=62.0
Q ss_pred HHhhhcCChHHHHHHHHHc-CCCCCHhHHHHH-HHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh-ccCChH
Q 046221 396 SSYSKCGNVDLAYIVFEEM-GFLRDVVSWNTI-IYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG-HAGLTN 472 (572)
Q Consensus 396 ~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~-~~g~~~ 472 (572)
..-.+.++.+++..++..+ -..|.......+ ...+...|++.+|..+|+++.+. .|....-..|+..|. ..|+.+
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHHcCChH
Confidence 3445678999999999988 344443333222 33467899999999999998774 344433344444333 333332
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHH
Q 046221 473 DGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL 513 (572)
Q Consensus 473 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 513 (572)
=..+-+++++.. +|.. -..++..+....+...|...
T Consensus 96 -Wr~~A~evle~~---~d~~-a~~Lv~~Ll~~~~~~~a~~~ 131 (160)
T PF09613_consen 96 -WRRYADEVLESG---ADPD-ARALVRALLARADLEPAHEA 131 (160)
T ss_pred -HHHHHHHHHhcC---CChH-HHHHHHHHHHhccccchhhh
Confidence 122222343322 3332 23455666666666665553
No 287
>PRK09687 putative lyase; Provisional
Probab=91.60 E-value=10 Score=34.40 Aligned_cols=241 Identities=9% Similarity=-0.081 Sum_probs=134.2
Q ss_pred HHhccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHcCCCCh----HHHHHHHHHHHHhc
Q 046221 26 NLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNL----ELARSIHGLMVKFG 101 (572)
Q Consensus 26 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~----~~a~~~~~~~~~~~ 101 (572)
.+++.+..+|.......+.++...|. .++...+..+.. .+|...-...+.++...|+. .++...+..+....
T Consensus 27 ~L~~~L~d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D 102 (280)
T PRK09687 27 ELFRLLDDHNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALED 102 (280)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcC
Confidence 34444455677777777777776664 344444444443 33444444555666666653 34555555553322
Q ss_pred CCCCcccCCCCCCceeHHHHHHHHHhCCC-----hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHH
Q 046221 102 LESDLFEGLKNPYLVSCNAIVAGFINNKL-----FQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLT 176 (572)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 176 (572)
++..+-...+.++...+. ...+.+.+..... .++..+-...+.++++.++. .+...+-.+
T Consensus 103 -----------~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~ 167 (280)
T PRK09687 103 -----------KSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVINDE-AAIPLLINL 167 (280)
T ss_pred -----------CCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCCH-HHHHHHHHH
Confidence 444455555555555432 1234444444333 33555666677777777763 455555555
Q ss_pred HHhcCCCChhHHhHHHHHHHhCC-CHHHHHH-HHhhcCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCccch
Q 046221 177 IKLGLILDVSVNNSVLDMYSCLM-DLDAAIQ-IFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVAL 254 (572)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 254 (572)
++ .++..+-...+.++.+.+ +...+.. +...+..++..+-...+.++.+.++. .+...+-...+.+. ..
T Consensus 168 L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~-----~~ 238 (280)
T PRK09687 168 LK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT-----VG 238 (280)
T ss_pred hc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc-----hH
Confidence 54 344455555556666543 1233443 34444557777777888888888874 45555555554422 24
Q ss_pred HHHHHHhcccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHH
Q 046221 255 LNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYS 297 (572)
Q Consensus 255 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 297 (572)
..++.++...|+. .+...+..+.+. .+|..+-...+.++.
T Consensus 239 ~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 239 DLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 5677788888885 577777776654 336655555555443
No 288
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.55 E-value=8.9 Score=33.54 Aligned_cols=53 Identities=13% Similarity=0.043 Sum_probs=29.3
Q ss_pred HHHHHHhhCChhHHHHHHHhccC--CCC---hHHHHHHHHHHhhhcCCHHHHHHHHHHH
Q 046221 497 VVDLLARAGCLSDASGLAGKLLE--GMG---PNIWRALLSGCVLHVGRFQDAEALRSGS 550 (572)
Q Consensus 497 l~~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~~l~~~~~~~~g~~~~A~~~~~~m 550 (572)
+.+.|.+.|.+..|..-++.+.+ +.. ......+..+|..- |-.++|...-+=+
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~l-gl~~~a~~~~~vl 230 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYAL-GLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHh-CChHHHHHHHHHH
Confidence 34566677777777776666665 111 12344445555544 6666666544433
No 289
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.45 E-value=2.6 Score=41.26 Aligned_cols=152 Identities=14% Similarity=0.116 Sum_probs=101.1
Q ss_pred HhhcCChhhHHHHhccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHcCCCChHHHHHHH
Q 046221 15 YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIH 94 (572)
Q Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 94 (572)
+.-.|+++.|..++..++++ .-+.+...+.++|..++|+++ .+|+.. -.....+.|+++.|.++.
T Consensus 596 ~vmrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~iA~~la 660 (794)
T KOG0276|consen 596 LVLRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLDIAFDLA 660 (794)
T ss_pred HhhhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHHHHHHHH
Confidence 34457888888887777743 345666777777877777765 233321 123344678888887775
Q ss_pred HHHHHhcCCCCcccCCCCCCceeHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHH
Q 046221 95 GLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHG 174 (572)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 174 (572)
.+. .+..-|..|..+....|++..|.+.|...+. |..|+-.+...|+.+....+-.
T Consensus 661 ~e~---------------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~ 716 (794)
T KOG0276|consen 661 VEA---------------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLAS 716 (794)
T ss_pred Hhh---------------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHH
Confidence 443 3455799999999999999999999987654 4556666777777766665555
Q ss_pred HHHHhcCCCChhHHhHHHHHHHhCCCHHHHHHHHhhc
Q 046221 175 LTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREM 211 (572)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (572)
...+.| .. |...-+|...|+++++.+++.+-
T Consensus 717 ~~~~~g-~~-----N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 717 LAKKQG-KN-----NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHhhc-cc-----chHHHHHHHcCCHHHHHHHHHhc
Confidence 555555 22 22334556677888877777654
No 290
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.45 E-value=0.49 Score=26.92 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 046221 422 SWNTIIYGYGVNGHGETALALYHKMTE 448 (572)
Q Consensus 422 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 448 (572)
+|..|...|.+.|++++|+.+|++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788889999999999999988553
No 291
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.08 E-value=0.46 Score=38.06 Aligned_cols=86 Identities=5% Similarity=-0.013 Sum_probs=58.8
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHHHHHHhCC
Q 046221 120 AIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLM 199 (572)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (572)
.++..+.+.+.+......++.+...+...+....+.++..|++.++.+....+++ ..+..-...++..+.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~-------~~~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK-------TSNNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT-------SSSSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc-------cccccCHHHHHHHHHhcc
Confidence 4567777788888888888888877656677788888888888877777776665 222244455666667777
Q ss_pred CHHHHHHHHhhcC
Q 046221 200 DLDAAIQIFREME 212 (572)
Q Consensus 200 ~~~~a~~~~~~~~ 212 (572)
.+++|.-++.++.
T Consensus 85 l~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 85 LYEEAVYLYSKLG 97 (143)
T ss_dssp SHHHHHHHHHCCT
T ss_pred hHHHHHHHHHHcc
Confidence 7777776666654
No 292
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.92 E-value=1.7 Score=35.97 Aligned_cols=20 Identities=20% Similarity=0.101 Sum_probs=9.7
Q ss_pred HHHhhCChhHHHHHHHhccC
Q 046221 500 LLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 500 ~~~~~g~~~~A~~~~~~~~~ 519 (572)
+|.+..++++|++-+.++.+
T Consensus 177 ayek~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILE 196 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHH
Confidence 44444455555555554443
No 293
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.72 E-value=0.63 Score=25.89 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=12.0
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhH
Q 046221 458 YLSILNACGHAGLTNDGLVIFNQMI 482 (572)
Q Consensus 458 ~~~l~~~~~~~g~~~~a~~~~~~~~ 482 (572)
|..+..+|...|++++|+..|++++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHH
Confidence 4444445555555555555555544
No 294
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=90.62 E-value=23 Score=36.64 Aligned_cols=166 Identities=13% Similarity=0.017 Sum_probs=93.2
Q ss_pred CCceeHHHHHHHHH-hCCChHHHHHHHHHHHhCCCCCCHh-----hHHHHHHHHhccCChHHHHHHHHHHHHhcCC----
Q 046221 113 PYLVSCNAIVAGFI-NNKLFQQAVLLFNFFRGSGLVPNAV-----TMLTVIRGCVALGSRALCELIHGLTIKLGLI---- 182 (572)
Q Consensus 113 ~~~~~~~~l~~~~~-~~~~~~~a~~~~~~m~~~~~~p~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---- 182 (572)
....++-.+...+. ...+++.|...+++.....-.++-. .-..+++.+.+.+... |...++..++.--.
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~ 135 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHS 135 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCch
Confidence 33455666777766 5788999999998765433222222 1223455555655555 88888887764322
Q ss_pred CChhHHhHH-HHHHHhCCCHHHHHHHHhhcCC-----CC--cccHHHHHHHHH--ccCCHHHHHHHHHHHHhCCC-----
Q 046221 183 LDVSVNNSV-LDMYSCLMDLDAAIQIFREMEC-----KD--VISWTRMMGLFV--DFEYAGDALKIFREMRKSRI----- 247 (572)
Q Consensus 183 ~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~-----~~--~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~~~----- 247 (572)
+-...+.-+ +..+...++...|.+.++.+.. .| ...+-.++.+.. ..+..+++.+.++++.....
T Consensus 136 ~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~ 215 (608)
T PF10345_consen 136 AWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLD 215 (608)
T ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccC
Confidence 222233333 2233334788888888877654 22 233334444333 45666777777776633221
Q ss_pred ----CCCccchHHHHHHhc--ccCChHHHHHHHHHHHH
Q 046221 248 ----ICDTVALLNLISVNA--ILGDLKRGKQLHAQVVL 279 (572)
Q Consensus 248 ----~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~ 279 (572)
.|-..++..+++.++ ..|+++.+...++++..
T Consensus 216 ~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 216 PSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 233455666666553 45776677666665543
No 295
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=90.07 E-value=32 Score=37.35 Aligned_cols=111 Identities=18% Similarity=0.161 Sum_probs=74.0
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHhcc
Q 046221 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS--TYLSILNACGHA 468 (572)
Q Consensus 391 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~ 468 (572)
|.+..+-+...+.+++|.-.|+..|. ..--+.+|...|++.+|+.+..++.. .-|.. +-..|+.-+...
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk------lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~ 1012 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGK------LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQ 1012 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhcc------HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHc
Confidence 33444445566777777777777654 23446777888888888888776654 12222 225677778888
Q ss_pred CChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC
Q 046221 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 469 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
+++-+|-++..+... .|. -.+..|++...+++|.++......
T Consensus 1013 ~kh~eAa~il~e~~s----d~~-----~av~ll~ka~~~~eAlrva~~~~~ 1054 (1265)
T KOG1920|consen 1013 RKHYEAAKILLEYLS----DPE-----EAVALLCKAKEWEEALRVASKAKR 1054 (1265)
T ss_pred ccchhHHHHHHHHhc----CHH-----HHHHHHhhHhHHHHHHHHHHhccc
Confidence 999999988887652 222 234566777889999998887763
No 296
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=89.97 E-value=20 Score=34.85 Aligned_cols=160 Identities=17% Similarity=0.154 Sum_probs=70.1
Q ss_pred CHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc---CCCCCHhHHHHHHH
Q 046221 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM---GFLRDVVSWNTIIY 428 (572)
Q Consensus 352 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~l~~ 428 (572)
|.....+++..++...+...++.+..+|...| -+...|-.++++|... ..+.-..+|+++ .+ .|.+.-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 33444444555555555555555555554443 2333444455555444 334444444433 21 22222222333
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCC------HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 046221 429 GYGVNGHGETALALYHKMTETGEVPD------SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLA 502 (572)
Q Consensus 429 ~~~~~~~~~~A~~~~~~~~~~g~~p~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 502 (572)
-|-+ ++.+.+...|.++... +-|. ...|.-|... -..+.|..+.+..++..+.|..--...+.-+..-|.
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 3322 4445555555554443 2220 0122222221 123444555555555444444444444444445555
Q ss_pred hhCChhHHHHHHHhccC
Q 046221 503 RAGCLSDASGLAGKLLE 519 (572)
Q Consensus 503 ~~g~~~~A~~~~~~~~~ 519 (572)
...++.+|++++..+.+
T Consensus 217 ~~eN~~eai~Ilk~il~ 233 (711)
T COG1747 217 ENENWTEAIRILKHILE 233 (711)
T ss_pred cccCHHHHHHHHHHHhh
Confidence 55566666666655544
No 297
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.88 E-value=4.7 Score=31.85 Aligned_cols=50 Identities=6% Similarity=0.088 Sum_probs=36.4
Q ss_pred hhcCChHHHHHHHHHc-CCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 046221 399 SKCGNVDLAYIVFEEM-GFL---RDVVSWNTIIYGYGVNGHGETALALYHKMTETG 450 (572)
Q Consensus 399 ~~~g~~~~A~~~~~~~-~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g 450 (572)
...++.+++..+++.+ -.. +...++... .+...|++++|.++|++..+.+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccC
Confidence 4578899999999888 333 444444433 4677899999999999988854
No 298
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.57 E-value=10 Score=30.98 Aligned_cols=92 Identities=16% Similarity=0.155 Sum_probs=47.0
Q ss_pred CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHH
Q 046221 415 GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY 494 (572)
Q Consensus 415 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 494 (572)
+++|+...+..++..+.+.|++.. +..+...++-||+......+-.+. +.+..+.++=-+|++.-+. .+
T Consensus 24 ~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL~~-----~~ 92 (167)
T PF07035_consen 24 NIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRLGT-----AY 92 (167)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHhhh-----hH
Confidence 555666666666666666665433 333444455555544443332222 2233444444444432211 24
Q ss_pred HHHHHHHHhhCChhHHHHHHHhc
Q 046221 495 GCVVDLLARAGCLSDASGLAGKL 517 (572)
Q Consensus 495 ~~l~~~~~~~g~~~~A~~~~~~~ 517 (572)
..+++.+...|++-+|.++.++.
T Consensus 93 ~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 93 EEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHc
Confidence 44556666777777777777664
No 299
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.39 E-value=20 Score=34.00 Aligned_cols=65 Identities=9% Similarity=0.123 Sum_probs=42.9
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHhccCChHHHHHHHHHhHH
Q 046221 419 DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP---DSSTYLSILNACGHAGLTNDGLVIFNQMIE 483 (572)
Q Consensus 419 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 483 (572)
...+|..++..+.+.|.++.|...+.++...+..+ ++.....-+......|+..+|+..++..++
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35567777778888888888888888777643211 223333445556677777888887777664
No 300
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.27 E-value=0.6 Score=25.98 Aligned_cols=27 Identities=19% Similarity=0.130 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhhCChhHHHHHHHhccC
Q 046221 493 HYGCVVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 493 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
.|..++.+|...|++++|+..++++.+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455666666666666666666666554
No 301
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=88.87 E-value=1.1 Score=24.84 Aligned_cols=25 Identities=12% Similarity=0.224 Sum_probs=11.8
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhH
Q 046221 458 YLSILNACGHAGLTNDGLVIFNQMI 482 (572)
Q Consensus 458 ~~~l~~~~~~~g~~~~a~~~~~~~~ 482 (572)
+..+...+...|++++|++.|++++
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3344444555555555555555544
No 302
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=88.57 E-value=0.71 Score=25.59 Aligned_cols=27 Identities=19% Similarity=0.115 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhhCChhHHHHHHHhccC
Q 046221 493 HYGCVVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 493 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
.+..+..++...|++++|++.+++...
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345556666666666666666666544
No 303
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=88.13 E-value=27 Score=34.00 Aligned_cols=159 Identities=10% Similarity=0.096 Sum_probs=107.7
Q ss_pred CCchhHHHHHHHHhhhcCChHHHHHHHHHc-CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHH-HHHH
Q 046221 385 PRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY-LSIL 462 (572)
Q Consensus 385 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~-~~l~ 462 (572)
+.+....-+++..+.......-.+.+..+| .+..+...|-.++++|..+ ..++-..+|+++.+. .-|.... ..|.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~--dfnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEY--DFNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--cchhHHHHHHHH
Confidence 445556667888888888888888999888 5556778899999999998 567889999999984 3444333 4444
Q ss_pred HHHhccCChHHHHHHHHHhHHhcCCCCC------hhHHHHHHHHHHhhCChhHHHHHHHhccC----CCChHHHHHHHHH
Q 046221 463 NACGHAGLTNDGLVIFNQMIEENKVKPS------QEHYGCVVDLLARAGCLSDASGLAGKLLE----GMGPNIWRALLSG 532 (572)
Q Consensus 463 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~l~~~ 532 (572)
.-| ..++...+..+|.+++... .|. ...|..|...- ..+.+.-..+..++.. ..-...+.-+..-
T Consensus 140 ~~y-Ekik~sk~a~~f~Ka~yrf--I~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 140 DKY-EKIKKSKAAEFFGKALYRF--IPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHH-HHhchhhHHHHHHHHHHHh--cchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 444 4488899999999887443 231 12455554322 3466666777776655 2222334444455
Q ss_pred HhhhcCCHHHHHHHHHHHHh
Q 046221 533 CVLHVGRFQDAEALRSGSQK 552 (572)
Q Consensus 533 ~~~~~g~~~~A~~~~~~m~~ 552 (572)
|... .+|++|++++..+.+
T Consensus 215 Ys~~-eN~~eai~Ilk~il~ 233 (711)
T COG1747 215 YSEN-ENWTEAIRILKHILE 233 (711)
T ss_pred hccc-cCHHHHHHHHHHHhh
Confidence 5555 899999999986554
No 304
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.13 E-value=3.7 Score=36.78 Aligned_cols=101 Identities=13% Similarity=0.099 Sum_probs=69.9
Q ss_pred cCCCChhHHhHHHHHHHhCCCHHHHHHHHhhcCC-CCc-----ccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCccc
Q 046221 180 GLILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC-KDV-----ISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVA 253 (572)
Q Consensus 180 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 253 (572)
|.+....+...++..-....+++.++..+-++.. ++. .+-...++. +..-++++++.++..=.+-|+-||.++
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl-llky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH-HHccChHHHHHHHhCcchhccccchhh
Confidence 4455555555555555556678888877766654 211 111122232 333467788888888888899999999
Q ss_pred hHHHHHHhcccCChHHHHHHHHHHHHhC
Q 046221 254 LLNLISVNAILGDLKRGKQLHAQVVLGG 281 (572)
Q Consensus 254 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 281 (572)
++.+|+.+.+.+++..|.++.-.|....
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999998888887665
No 305
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=87.84 E-value=1.7 Score=29.76 Aligned_cols=47 Identities=13% Similarity=0.174 Sum_probs=27.3
Q ss_pred ccCChHHHHHHHHHhHHhcCCCCChh-HHHHHHHHHHhhCChhHHHHH
Q 046221 467 HAGLTNDGLVIFNQMIEENKVKPSQE-HYGCVVDLLARAGCLSDASGL 513 (572)
Q Consensus 467 ~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~ 513 (572)
...+.++|+..|+.++++..-+|+.. ++..++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666665443333322 555666666666666666654
No 306
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.69 E-value=36 Score=35.03 Aligned_cols=66 Identities=9% Similarity=0.203 Sum_probs=34.7
Q ss_pred HHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccCCCChHHHHHHHHHHhhh
Q 046221 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH 536 (572)
Q Consensus 459 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~ 536 (572)
...+..|.+.|-+++..-++.+| | .+..+|.-.--+.++.++|.++.++ ..|+..|..|+..+..+
T Consensus 638 ekA~eiC~q~~~~~E~VYlLgrm----G-----n~k~AL~lII~el~die~AIefvKe---q~D~eLWe~LI~~~ldk 703 (846)
T KOG2066|consen 638 EKALEICSQKNFYEELVYLLGRM----G-----NAKEALKLIINELRDIEKAIEFVKE---QDDSELWEDLINYSLDK 703 (846)
T ss_pred HHHHHHHHhhCcHHHHHHHHHhh----c-----chHHHHHHHHHHhhCHHHHHHHHHh---cCCHHHHHHHHHHhhcC
Confidence 33444555555555555555544 1 1222222223344666666666554 45667777777766543
No 307
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=86.93 E-value=0.66 Score=25.98 Aligned_cols=31 Identities=23% Similarity=0.369 Sum_probs=21.7
Q ss_pred HHHHHhcCCCC-CHHHHHHHHHHHhccCChHHHH
Q 046221 443 YHKMTETGEVP-DSSTYLSILNACGHAGLTNDGL 475 (572)
Q Consensus 443 ~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~ 475 (572)
|++.++ +.| +...|..+...|...|++++|+
T Consensus 2 y~kAie--~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIE--LNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHH--HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 445555 456 4577888888888888888775
No 308
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.11 E-value=8.6 Score=32.31 Aligned_cols=74 Identities=9% Similarity=0.092 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcC--CCCChhHHHHHHHHHHhhCChhHHH
Q 046221 437 ETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENK--VKPSQEHYGCVVDLLARAGCLSDAS 511 (572)
Q Consensus 437 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 511 (572)
+.|.+.|-.+...+.--++.....|..-|. ..+.+++++++-++++... -.+|+..+.+|+..+.+.|+++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 456666666666554434444444443333 5567777777766654332 2456667777777777777776664
No 309
>PRK11619 lytic murein transglycosylase; Provisional
Probab=86.07 E-value=46 Score=34.56 Aligned_cols=311 Identities=8% Similarity=-0.069 Sum_probs=150.8
Q ss_pred HHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhc-CCCChhHHhHHHHHHHhCCCHHH
Q 046221 125 FINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLG-LILDVSVNNSVLDMYSCLMDLDA 203 (572)
Q Consensus 125 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ 203 (572)
..+.|++..+..+...+...-+ ..-..|..+..... ....++....++ +.. .+.....-...+..+.+.+++..
T Consensus 43 a~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l~-~~~~~ev~~Fl~---~~~~~P~~~~Lr~~~l~~La~~~~w~~ 117 (644)
T PRK11619 43 AWDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDLM-NQPAVQVTNFIR---ANPTLPPARSLQSRFVNELARREDWRG 117 (644)
T ss_pred HHHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhccc-cCCHHHHHHHHH---HCCCCchHHHHHHHHHHHHHHccCHHH
Confidence 3567888888777777643222 12223333332221 223443333332 322 22223334445556677888888
Q ss_pred HHHHHhhcCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCccchHHHHHHhcccCChHHHH--HHHHHHHHhC
Q 046221 204 AIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGK--QLHAQVVLGG 281 (572)
Q Consensus 204 a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~--~~~~~~~~~~ 281 (572)
....+..- ..+...-.....+....|+.++|....+.+-..|. ..+.....++..+...|.+.... +=+..+...|
T Consensus 118 ~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~ 195 (644)
T PRK11619 118 LLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAG 195 (644)
T ss_pred HHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC
Confidence 88744232 34555566777888888998888887777766552 34566777777776555443322 1111111111
Q ss_pred C-----------CCCc-chHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHHH--HcCChHHHHHHHHHHHhcC
Q 046221 282 L-----------QSEL-RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYV--QNGCAREALNQFIKMRQEK 347 (572)
Q Consensus 282 ~-----------~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~ 347 (572)
- .++. .....++..+ .+...+...+.... ++...-..++-++. ...+.+.|..++.......
T Consensus 196 ~~~lA~~l~~~l~~~~~~~a~a~~al~---~~p~~~~~~~~~~~-~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~ 271 (644)
T PRK11619 196 NTGLVTYLAKQLPADYQTIASALIKLQ---NDPNTVETFARTTG-PTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQ 271 (644)
T ss_pred CHHHHHHHHHhcChhHHHHHHHHHHHH---HCHHHHHHHhhccC-CChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhc
Confidence 0 1110 0111111111 12222222222211 11111111111221 3445688888888775344
Q ss_pred CCCCCHh--HHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc--CCCCCHhHH
Q 046221 348 TDSVDSI--TLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM--GFLRDVVSW 423 (572)
Q Consensus 348 ~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~ 423 (572)
...+... ....+.......+..+.+...++...... .+......-+..-.+.++++.+...+..| ...-...-.
T Consensus 272 ~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~ 349 (644)
T PRK11619 272 KLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWR 349 (644)
T ss_pred CCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhH
Confidence 4333322 22222222222222445555554433222 23344444455555788888888888888 121111222
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh
Q 046221 424 NTIIYGYGVNGHGETALALYHKMTE 448 (572)
Q Consensus 424 ~~l~~~~~~~~~~~~A~~~~~~~~~ 448 (572)
-=+..++...|+.++|...|+++..
T Consensus 350 YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 350 YWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 2245555667888888888888754
No 310
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=86.00 E-value=46 Score=34.45 Aligned_cols=48 Identities=10% Similarity=-0.124 Sum_probs=32.2
Q ss_pred hhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHcCCC
Q 046221 37 VSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQ 85 (572)
Q Consensus 37 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 85 (572)
..--.+|-.+.+.|++++|.++..+.... .......+...+..+....
T Consensus 112 ~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~ 159 (613)
T PF04097_consen 112 DPIWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSP 159 (613)
T ss_dssp EEHHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTT
T ss_pred CccHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCC
Confidence 34446667788899999999988665443 4555667788888887653
No 311
>PRK11619 lytic murein transglycosylase; Provisional
Probab=85.82 E-value=47 Score=34.47 Aligned_cols=133 Identities=9% Similarity=-0.024 Sum_probs=66.4
Q ss_pred HHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHc--cCCHHHHHHHHHHHHhCCCCCCcc-chHHHHHHhcccCChHHHH
Q 046221 195 YSCLMDLDAAIQIFREMECKDVISWTRMMGLFVD--FEYAGDALKIFREMRKSRIICDTV-ALLNLISVNAILGDLKRGK 271 (572)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~ 271 (572)
..+.|++..+.++...+...-...|-........ ...+++...++++-.. .|-.. .-...+..+.+.+++....
T Consensus 43 a~~~g~~~~~~~~~~~l~d~pL~~yl~y~~L~~~l~~~~~~ev~~Fl~~~~~---~P~~~~Lr~~~l~~La~~~~w~~~~ 119 (644)
T PRK11619 43 AWDNRQMDVVEQLMPTLKDYPLYPYLEYRQLTQDLMNQPAVQVTNFIRANPT---LPPARSLQSRFVNELARREDWRGLL 119 (644)
T ss_pred HHHCCCHHHHHHHHHhccCCCcHhHHHHHHHHhccccCCHHHHHHHHHHCCC---CchHHHHHHHHHHHHHHccCHHHHH
Confidence 4566788888888877754322222222221111 2245555555444211 12221 1222333445556666555
Q ss_pred HHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHHHHHHhccC---CCCcchHHHHHHHHHHcCChHH
Q 046221 272 QLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQIT---EKSLVSWTAIISGYVQNGCARE 335 (572)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 335 (572)
..+. ..+.+.........+....|+.++|......+- ...+..++.++..+.+.|....
T Consensus 120 ~~~~-----~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~ 181 (644)
T PRK11619 120 AFSP-----EKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDP 181 (644)
T ss_pred HhcC-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCH
Confidence 4221 123444445566677777787766655554432 2234567777777776665443
No 312
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=85.72 E-value=5 Score=33.41 Aligned_cols=87 Identities=14% Similarity=0.081 Sum_probs=65.3
Q ss_pred HHhhhcCChHHHHHHHHHc--CCCCC-----HhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHhc
Q 046221 396 SSYSKCGNVDLAYIVFEEM--GFLRD-----VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS-STYLSILNACGH 467 (572)
Q Consensus 396 ~~~~~~g~~~~A~~~~~~~--~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~ 467 (572)
.-+.+.|++++|..-|... -+++. ...|..-..++.+.+.++.|+.-..+.++ +.|+. .....-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie--l~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE--LNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh--cCchhHHHHHHHHHHHHh
Confidence 3466789999999888877 23221 34455556778889999999999988888 56644 555555678899
Q ss_pred cCChHHHHHHHHHhHHh
Q 046221 468 AGLTNDGLVIFNQMIEE 484 (572)
Q Consensus 468 ~g~~~~a~~~~~~~~~~ 484 (572)
..++++|+.-|+.+++.
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 99999999999998764
No 313
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=85.55 E-value=3.5 Score=37.33 Aligned_cols=86 Identities=12% Similarity=0.005 Sum_probs=51.2
Q ss_pred HHhhhcCChHHHHHHHHHc-CCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHH
Q 046221 396 SSYSKCGNVDLAYIVFEEM-GFLR-DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTND 473 (572)
Q Consensus 396 ~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~ 473 (572)
+.|.+.|.+++|+..|... ...| +.+++..-..+|.+.+++..|+.-....+..+ ..-...|..-+.+-...|...+
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHHH
Confidence 4577888888888888765 4445 67777777778888887777776666655421 0011233333333334445555
Q ss_pred HHHHHHHhH
Q 046221 474 GLVIFNQMI 482 (572)
Q Consensus 474 a~~~~~~~~ 482 (572)
|.+-++.++
T Consensus 184 AKkD~E~vL 192 (536)
T KOG4648|consen 184 AKKDCETVL 192 (536)
T ss_pred HHHhHHHHH
Confidence 555555444
No 314
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.25 E-value=35 Score=34.73 Aligned_cols=148 Identities=18% Similarity=0.171 Sum_probs=73.8
Q ss_pred hcccccHHHHHHHHHHHHH-------hcCCCchhHHHHHHHHhhhcC-----ChHHHHHHHHHc---CCCCCHhHHHHHH
Q 046221 363 SGELAALEICLQLHGIAFE-------AGFPRYRSVQNCLISSYSKCG-----NVDLAYIVFEEM---GFLRDVVSWNTII 427 (572)
Q Consensus 363 ~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~---~~~~~~~~~~~l~ 427 (572)
.....|.+.|..+++.+.+ .+.+ ....-+..+|.+.. +.+.|..++... +. |+....-..+
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~---~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~ 334 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKGLP---PAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVL 334 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhcCC---ccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHH
Confidence 3455566777777666655 4422 23344555555532 566788888776 33 4443332222
Q ss_pred HHHHh-cCChHHHHHHHHHHHhcCCCCCHHHHHHHHH--HHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhh
Q 046221 428 YGYGV-NGHGETALALYHKMTETGEVPDSSTYLSILN--ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARA 504 (572)
Q Consensus 428 ~~~~~-~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 504 (572)
.-... ..+...|.++|......|..+-. .+..++. +..-..+...|..+++++.+ .| .|...--...+..+..
T Consensus 335 ~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~-~~la~~y~~G~gv~r~~~~A~~~~k~aA~-~g-~~~A~~~~~~~~~~g~- 410 (552)
T KOG1550|consen 335 YETGTKERDYRRAFEYYSLAAKAGHILAI-YRLALCYELGLGVERNLELAFAYYKKAAE-KG-NPSAAYLLGAFYEYGV- 410 (552)
T ss_pred HHcCCccccHHHHHHHHHHHHHcCChHHH-HHHHHHHHhCCCcCCCHHHHHHHHHHHHH-cc-ChhhHHHHHHHHHHcc-
Confidence 22222 24567888888888887643321 1111111 12234467788888887753 33 2332222222233333
Q ss_pred CChhHHHHHHHhcc
Q 046221 505 GCLSDASGLAGKLL 518 (572)
Q Consensus 505 g~~~~A~~~~~~~~ 518 (572)
++++.+.-.+..+.
T Consensus 411 ~~~~~~~~~~~~~a 424 (552)
T KOG1550|consen 411 GRYDTALALYLYLA 424 (552)
T ss_pred ccccHHHHHHHHHH
Confidence 55555554444433
No 315
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=85.24 E-value=15 Score=30.20 Aligned_cols=41 Identities=20% Similarity=0.270 Sum_probs=21.5
Q ss_pred hhHHHHHHHhccC-CCChHHHHHHHHHHhhhcCCHHHHHHHHHHHHhCC
Q 046221 507 LSDASGLAGKLLE-GMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKG 554 (572)
Q Consensus 507 ~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~g~~~~A~~~~~~m~~~~ 554 (572)
+++|.+.|+++.. +|+..+|+.-+.... .|-++..++.+.+
T Consensus 96 F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~-------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNELYRKSLEMAA-------KAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHH-------THHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHH-------hhHHHHHHHHHHH
Confidence 3445555555554 777777776665442 3555555555444
No 316
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=85.11 E-value=13 Score=27.23 Aligned_cols=60 Identities=13% Similarity=0.158 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 046221 438 TALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVD 499 (572)
Q Consensus 438 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 499 (572)
+..+-++.+....+.|++......+++|-+.+++..|+++|+-+..+.| +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 4455566666666777777777777777777777777777776644433 22225555543
No 317
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=85.11 E-value=1 Score=23.32 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=13.6
Q ss_pred hhHHHHHhhcCChhhHHHHhc
Q 046221 9 SKLLSNYFKSGKIKEAENLFD 29 (572)
Q Consensus 9 ~~l~~~~~~~~~~~~A~~~~~ 29 (572)
..+...+...|++++|+.+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 445666667777777766664
No 318
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.90 E-value=20 Score=29.31 Aligned_cols=121 Identities=12% Similarity=0.106 Sum_probs=71.9
Q ss_pred hhhcCChHHHHHHHHHc---CCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHH-HHHHH--HHHHhccCC
Q 046221 398 YSKCGNVDLAYIVFEEM---GFLRD-VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSS-TYLSI--LNACGHAGL 470 (572)
Q Consensus 398 ~~~~g~~~~A~~~~~~~---~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~-~~~~l--~~~~~~~g~ 470 (572)
+.+.+..++|+.-|..+ |...- ...--.+.......|+...|...|+++-...-.|-.. -...| ...+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 45677788888888777 22111 1111122333566788888888888877644334322 11112 223567788
Q ss_pred hHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC
Q 046221 471 TNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 471 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
+++...-.+.+- ..+-+.....-..|.-+-.+.|++.+|...|..+..
T Consensus 148 y~dV~srvepLa-~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLA-GDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhcc-CCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 888777777663 333333444555676677788888888888887765
No 319
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=84.20 E-value=9.1 Score=27.59 Aligned_cols=62 Identities=18% Similarity=0.101 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHHH
Q 046221 131 FQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLD 193 (572)
Q Consensus 131 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 193 (572)
.-++.+-++.+....+.|+.....+.+++|.+.+++..|..+++-..... ..+...|..++.
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 33556667777777788999999999999999999999999888776432 223345555443
No 320
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.08 E-value=2.3 Score=24.79 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHhH
Q 046221 456 STYLSILNACGHAGLTNDGLVIFNQMI 482 (572)
Q Consensus 456 ~~~~~l~~~~~~~g~~~~a~~~~~~~~ 482 (572)
.+++.|...|...|++++|..++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 345566666666666666666666654
No 321
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=83.96 E-value=19 Score=31.11 Aligned_cols=115 Identities=8% Similarity=-0.071 Sum_probs=64.0
Q ss_pred hhcCChHHHHHHHHHc-CCCCCH-hHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHhccCChHHHH
Q 046221 399 SKCGNVDLAYIVFEEM-GFLRDV-VSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS-STYLSILNACGHAGLTNDGL 475 (572)
Q Consensus 399 ~~~g~~~~A~~~~~~~-~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~ 475 (572)
....++..|...+.+. -+.|+. .-|+.-+.++.+.++++.+..--.+.++ +.||. .....+..+......+++|+
T Consensus 21 f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 21 FIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred cchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHH
Confidence 3344566666655554 555665 3345556667777777777766666666 56665 44445555666667777777
Q ss_pred HHHHHhH---HhcCCCCChhHHHHHHHHHHhhCChhHHHHHHH
Q 046221 476 VIFNQMI---EENKVKPSQEHYGCVVDLLARAGCLSDASGLAG 515 (572)
Q Consensus 476 ~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 515 (572)
..+.++. +...+++-..+...|..+=.+.=...++.++.+
T Consensus 99 ~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q 141 (284)
T KOG4642|consen 99 KVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQ 141 (284)
T ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHH
Confidence 7776652 223344444455555544333223334444333
No 322
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=83.77 E-value=1.9 Score=23.51 Aligned_cols=23 Identities=13% Similarity=0.303 Sum_probs=11.7
Q ss_pred HHHHHhccCChHHHHHHHHHhHH
Q 046221 461 ILNACGHAGLTNDGLVIFNQMIE 483 (572)
Q Consensus 461 l~~~~~~~g~~~~a~~~~~~~~~ 483 (572)
+..++.+.|++++|.+.|+++++
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 34444455555555555555543
No 323
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=83.68 E-value=2 Score=23.76 Aligned_cols=24 Identities=13% Similarity=0.220 Sum_probs=10.8
Q ss_pred HHHHHHHhccCChHHHHHHHHHhH
Q 046221 459 LSILNACGHAGLTNDGLVIFNQMI 482 (572)
Q Consensus 459 ~~l~~~~~~~g~~~~a~~~~~~~~ 482 (572)
..+...|...|++++|...|++.+
T Consensus 5 ~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 5 YNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444444444444444444443
No 324
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=83.55 E-value=25 Score=33.62 Aligned_cols=52 Identities=6% Similarity=-0.026 Sum_probs=28.2
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCHH--HHHHHHHHH--hccCChHHHHHHHHHhH
Q 046221 430 YGVNGHGETALALYHKMTETGEVPDSS--TYLSILNAC--GHAGLTNDGLVIFNQMI 482 (572)
Q Consensus 430 ~~~~~~~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~--~~~g~~~~a~~~~~~~~ 482 (572)
+...+++..|.++++.+... ++++.. .+..+..+| ...-++++|.+.++...
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 33556666666666666664 444333 333344443 34455666666666554
No 325
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.38 E-value=3.1 Score=24.27 Aligned_cols=29 Identities=28% Similarity=0.378 Sum_probs=22.8
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 046221 420 VVSWNTIIYGYGVNGHGETALALYHKMTE 448 (572)
Q Consensus 420 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 448 (572)
..+++.|...|...|++++|..++++..+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35678888888889999999998888765
No 326
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.31 E-value=26 Score=29.37 Aligned_cols=87 Identities=14% Similarity=0.032 Sum_probs=47.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCHHHH-----HHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 046221 427 IYGYGVNGHGETALALYHKMTETGEVPDSSTY-----LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLL 501 (572)
Q Consensus 427 ~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 501 (572)
...+...+++++|+.-++..... |....+ ..|.+.....|.+|+|+.+++... ..+. .......-.+++
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-~~~w--~~~~~elrGDil 169 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIK-EESW--AAIVAELRGDIL 169 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-cccH--HHHHHHHhhhHH
Confidence 34466667777777777666542 222222 223444566677777777766542 1111 122233345666
Q ss_pred HhhCChhHHHHHHHhccC
Q 046221 502 ARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 502 ~~~g~~~~A~~~~~~~~~ 519 (572)
...|+.++|+.-|++..+
T Consensus 170 l~kg~k~~Ar~ay~kAl~ 187 (207)
T COG2976 170 LAKGDKQEARAAYEKALE 187 (207)
T ss_pred HHcCchHHHHHHHHHHHH
Confidence 677777777777766655
No 327
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=83.28 E-value=1.3 Score=24.49 Aligned_cols=27 Identities=22% Similarity=0.194 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhhCChhHHHHHHHhccC
Q 046221 493 HYGCVVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 493 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456667777777777777777777654
No 328
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=83.26 E-value=0.72 Score=36.92 Aligned_cols=86 Identities=12% Similarity=0.113 Sum_probs=60.5
Q ss_pred HHHHHhcccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHHHHcCChHH
Q 046221 256 NLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335 (572)
Q Consensus 256 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 335 (572)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++.... .-...++..+.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 45666777777778888888888777667788888899999998888888888874332 334456666677777777
Q ss_pred HHHHHHHHH
Q 046221 336 ALNQFIKMR 344 (572)
Q Consensus 336 a~~~~~~~~ 344 (572)
+.-++.++.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 777776653
No 329
>PRK09687 putative lyase; Provisional
Probab=82.99 E-value=37 Score=30.91 Aligned_cols=135 Identities=8% Similarity=-0.032 Sum_probs=72.8
Q ss_pred chhHHHHHHHHhhhcCChHHHHHHHHHcCCCCCHhHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 046221 387 YRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNG-HGETALALYHKMTETGEVPDSSTYLSILNAC 465 (572)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 465 (572)
+..+-...+.++++.++. +|...+-.+-..++...-...+.++.+.+ +...+...+..+.. .++..+-...+.++
T Consensus 141 ~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aL 216 (280)
T PRK09687 141 STNVRFAVAFALSVINDE-AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGL 216 (280)
T ss_pred CHHHHHHHHHHHhccCCH-HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHH
Confidence 444444556666666653 44444444411244444444444554432 23456666666654 45666666677777
Q ss_pred hccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC-CCChHHHHHHHHHH
Q 046221 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE-GMGPNIWRALLSGC 533 (572)
Q Consensus 466 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~ 533 (572)
.+.|+ .+|+..+-+.++. ++ .....+.++...|+. +|...+..+.. .||..+-...+.+|
T Consensus 217 g~~~~-~~av~~Li~~L~~----~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 217 ALRKD-KRVLSVLIKELKK----GT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred HccCC-hhHHHHHHHHHcC----Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCCChhHHHHHHHHH
Confidence 77776 3555555555432 22 233566677777774 57777777665 56665544444443
No 330
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=82.17 E-value=8.2 Score=32.73 Aligned_cols=64 Identities=6% Similarity=-0.117 Sum_probs=50.1
Q ss_pred hHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHcCCCChHHHHHHHHHHHHhcC
Q 046221 38 SWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGL 102 (572)
Q Consensus 38 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 102 (572)
+.+..++.+.+.++..+++...+.-.+.. +.|..+-..++..+|-.|++++|..-++-.-+..+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p 66 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSP 66 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCc
Confidence 34556778888899999999988877663 55666778888999999999999887777666554
No 331
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=82.08 E-value=20 Score=30.99 Aligned_cols=100 Identities=12% Similarity=0.014 Sum_probs=73.5
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChh-HHHHHHHHHHhhCCh
Q 046221 430 YGVNGHGETALALYHKMTETGEVPDS-STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQE-HYGCVVDLLARAGCL 507 (572)
Q Consensus 430 ~~~~~~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~ 507 (572)
|....+++.|+..|.+.+. +.|+. .-|+.-+-++.+..+++.+..-...+++ +.|+.. ....+..++.....+
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq---l~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ---LDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh---cChHHHHHHHHHHHHHHhhccc
Confidence 4455678889998888877 78988 4456667788889999998888877764 456654 445567788888999
Q ss_pred hHHHHHHHhccC-------CCChHHHHHHHHHHh
Q 046221 508 SDASGLAGKLLE-------GMGPNIWRALLSGCV 534 (572)
Q Consensus 508 ~~A~~~~~~~~~-------~~~~~~~~~l~~~~~ 534 (572)
.+|+..+++..+ ++....+..|..+-.
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~ 128 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKK 128 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Confidence 999999998744 445556777776543
No 332
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=82.03 E-value=14 Score=26.93 Aligned_cols=60 Identities=18% Similarity=0.117 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHHH
Q 046221 133 QAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLD 193 (572)
Q Consensus 133 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 193 (572)
+..+-++.+....+.|+.......+++|.+.+++..|..+++-+...- .+....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 455666777777888999999999999999999999999988877643 233336665554
No 333
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=81.63 E-value=4.6 Score=27.77 Aligned_cols=51 Identities=18% Similarity=0.088 Sum_probs=37.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCC-CH-HHHHHHHHHHhccCChHHHHHHH
Q 046221 427 IYGYGVNGHGETALALYHKMTETGEVP-DS-STYLSILNACGHAGLTNDGLVIF 478 (572)
Q Consensus 427 ~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~-~~~~~l~~~~~~~g~~~~a~~~~ 478 (572)
+..| ..++.++|+..|....+.-..| +. .++..++.+|+..|++.+++++-
T Consensus 14 lkLY-~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 14 LKLY-HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HHHh-ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 6677888999998888764333 22 67788888999999988887653
No 334
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=81.30 E-value=35 Score=29.47 Aligned_cols=85 Identities=25% Similarity=0.250 Sum_probs=39.3
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhhCC
Q 046221 430 YGVNGHGETALALYHKMTETGEVPD--SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPS-QEHYGCVVDLLARAGC 506 (572)
Q Consensus 430 ~~~~~~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 506 (572)
+...++.+.+...+.+.... .++ ...+..+...+...++++.|...+....+.. |+ ...+..+...+...|.
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 251 (291)
T COG0457 177 LEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD---PDNAEALYNLALLLLELGR 251 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC---cccHHHHhhHHHHHHHcCC
Confidence 34445555555555555542 222 3444455555555555555555555554321 22 2233333333334444
Q ss_pred hhHHHHHHHhccC
Q 046221 507 LSDASGLAGKLLE 519 (572)
Q Consensus 507 ~~~A~~~~~~~~~ 519 (572)
.+++...+.+...
T Consensus 252 ~~~~~~~~~~~~~ 264 (291)
T COG0457 252 YEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555444
No 335
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.06 E-value=39 Score=29.86 Aligned_cols=260 Identities=12% Similarity=0.127 Sum_probs=156.0
Q ss_pred CCCCCcchHHHHHHH-HHhcCChhHHHHHHhccCCC-------CcchHHHHHHHHHHcCChHHHHHHHHHHHhc----CC
Q 046221 281 GLQSELRLSNSIIAM-YSKCGDLDSSRSVFNQITEK-------SLVSWTAIISGYVQNGCAREALNQFIKMRQE----KT 348 (572)
Q Consensus 281 ~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~ 348 (572)
+..||+..-|..-+. -.+..++++|.+-|.+..+- +..+...++..+.+.+++++.+..+.++..- -.
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 345666544433221 12445788999999887642 2245667888999999999999999888521 11
Q ss_pred CCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHh-----cCCCchhHHHHHHHHhhhcCChHHHHHHHHHc--CCC----
Q 046221 349 DSVDSITLVSILTASGELAALEICLQLHGIAFEA-----GFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM--GFL---- 417 (572)
Q Consensus 349 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~---- 417 (572)
..-+..+.++++...+...+.+...++++.-.+. +-..-..+-..+...|...|.+....+++.++ .++
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 2334557778887777777777777766544321 11223334456777888888888888888887 110
Q ss_pred --------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCCCHHHHHHHHHH-----HhccCChHHHHHHHHHhHH
Q 046221 418 --------RDVVSWNTIIYGYGVNGHGETALALYHKMTETG-EVPDSSTYLSILNA-----CGHAGLTNDGLVIFNQMIE 483 (572)
Q Consensus 418 --------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g-~~p~~~~~~~l~~~-----~~~~g~~~~a~~~~~~~~~ 483 (572)
.-...|..=|..|...++-.+...+|++.+.-. .-|.+... ..|+- +.+.|++++|..-|=++.+
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 113456667788888888888888888766532 23444433 33443 4577889888765544443
Q ss_pred h---cCCCCChh---HHHHHHHHHHhhCChhHHHHHHHhccC-----CCChHHHHHHHHHHhhhcCCHHHHHHHHHH
Q 046221 484 E---NKVKPSQE---HYGCVVDLLARAGCLSDASGLAGKLLE-----GMGPNIWRALLSGCVLHVGRFQDAEALRSG 549 (572)
Q Consensus 484 ~---~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~l~~~~~~~~g~~~~A~~~~~~ 549 (572)
. .|- |... -|..|...+.+.| ..=|+.-.. .|.......|+.+|.. ++..+-.+++..
T Consensus 260 NYDEsGs-pRRttCLKYLVLANMLmkS~-----iNPFDsQEAKPyKNdPEIlAMTnlv~aYQ~--NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 260 NYDESGS-PRRTTCLKYLVLANMLMKSG-----INPFDSQEAKPYKNDPEILAMTNLVAAYQN--NDIIEFERILKS 328 (440)
T ss_pred cccccCC-cchhHHHHHHHHHHHHHHcC-----CCCCcccccCCCCCCHHHHHHHHHHHHHhc--ccHHHHHHHHHh
Confidence 3 222 2222 2444444544433 222222111 3444567788888853 576666666554
No 336
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=81.05 E-value=73 Score=33.02 Aligned_cols=85 Identities=13% Similarity=0.078 Sum_probs=38.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhc-CCCchhHHHHHHHHhhh--
Q 046221 324 ISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG-FPRYRSVQNCLISSYSK-- 400 (572)
Q Consensus 324 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~-- 400 (572)
...+.-.|+++.|++.+-+ ......+.+.+...+..+.-..-.+... ..+.... -.|...-+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~---~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR---NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT-----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHhhHHHHHHHHHh---hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHH
Confidence 3445567788888877755 2244556666666666555443222221 1111100 01111445667777765
Q ss_pred -cCChHHHHHHHHHc
Q 046221 401 -CGNVDLAYIVFEEM 414 (572)
Q Consensus 401 -~g~~~~A~~~~~~~ 414 (572)
..+..+|.+++--+
T Consensus 339 ~~td~~~Al~Y~~li 353 (613)
T PF04097_consen 339 EITDPREALQYLYLI 353 (613)
T ss_dssp TTT-HHHHHHHHHGG
T ss_pred hccCHHHHHHHHHHH
Confidence 46788888888777
No 337
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.97 E-value=32 Score=28.85 Aligned_cols=127 Identities=13% Similarity=0.065 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHH--HHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHH---
Q 046221 422 SWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL--SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGC--- 496 (572)
Q Consensus 422 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~--- 496 (572)
.|..++.... .+.+ +.....+++....-.....++. .+...+...|++++|+.-++..+. .|....+..
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~ 129 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA----QTKDENLKALAA 129 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc----cchhHHHHHHHH
Confidence 3444444432 2333 4455556666532121222232 344568899999999999998863 233344443
Q ss_pred --HHHHHHhhCChhHHHHHHHhccCCCChHHHHHHHHHHhhhcCCHHHHHHHHHHHHhCC
Q 046221 497 --VVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKG 554 (572)
Q Consensus 497 --l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~A~~~~~~m~~~~ 554 (572)
|.......|.+++|+..++....+.-......+..-.....|+.++|..-|++..+..
T Consensus 130 lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 130 LRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 4467788999999999999887432233344444444444599999999999998886
No 338
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=80.89 E-value=80 Score=33.37 Aligned_cols=158 Identities=16% Similarity=0.066 Sum_probs=75.5
Q ss_pred hhcCChHHHHHHHHHc-------CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHH---HHHH--HHHh
Q 046221 399 SKCGNVDLAYIVFEEM-------GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY---LSIL--NACG 466 (572)
Q Consensus 399 ~~~g~~~~A~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~---~~l~--~~~~ 466 (572)
...|+++.|.++.+.. ...+....+..+..+..-.|++++|..+..+..+..-.-+...+ ..+. ..+.
T Consensus 469 l~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~ 548 (894)
T COG2909 469 LNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILE 548 (894)
T ss_pred HhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 3467777777776655 12234555666667777778888888777666553222233222 2222 2345
Q ss_pred ccCChHHH--HHHHHHhHHhcCC-CC----ChhHHHHHHHHHHhhCChhHHHHHHHhccC-----CCChH-HHHH--HHH
Q 046221 467 HAGLTNDG--LVIFNQMIEENKV-KP----SQEHYGCVVDLLARAGCLSDASGLAGKLLE-----GMGPN-IWRA--LLS 531 (572)
Q Consensus 467 ~~g~~~~a--~~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~-~~~~--l~~ 531 (572)
..|+...+ ...+......... +| -..+...+..++.+ ++.+..-.....+ .|.+. .+.. ++.
T Consensus 549 ~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA 625 (894)
T COG2909 549 AQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLA 625 (894)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHH
Confidence 56633322 2233322211111 11 12233334444433 4444433333322 22222 2222 233
Q ss_pred HHhhhcCCHHHHHHHHHHHHhCCCCCCC
Q 046221 532 GCVLHVGRFQDAEALRSGSQKKGIIKIP 559 (572)
Q Consensus 532 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 559 (572)
.+....|+.++|...++++....-.+.+
T Consensus 626 ~l~~~~Gdl~~A~~~l~~~~~l~~~~~~ 653 (894)
T COG2909 626 ELEFLRGDLDKALAQLDELERLLLNGQY 653 (894)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcCCCC
Confidence 3333348888888888887765555443
No 339
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=80.66 E-value=8.1 Score=28.00 Aligned_cols=50 Identities=14% Similarity=0.208 Sum_probs=21.9
Q ss_pred HhhcCChhhHHHHhccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHHHHcC
Q 046221 15 YFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSG 66 (572)
Q Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 66 (572)
+...|++++|..+.+.+.-||...|-++-. .+.|..+.+..-+.+|-.+|
T Consensus 49 LmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 334445555555555444445544444432 23333333444444444433
No 340
>PHA02875 ankyrin repeat protein; Provisional
Probab=80.30 E-value=60 Score=31.62 Aligned_cols=18 Identities=11% Similarity=0.174 Sum_probs=8.7
Q ss_pred HHHHHhCCCHHHHHHHHh
Q 046221 192 LDMYSCLMDLDAAIQIFR 209 (572)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~ 209 (572)
+...+..|+.+-+..+++
T Consensus 139 Lh~A~~~~~~~~v~~Ll~ 156 (413)
T PHA02875 139 LHLAVMMGDIKGIELLID 156 (413)
T ss_pred HHHHHHcCCHHHHHHHHh
Confidence 344445555555444444
No 341
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=80.09 E-value=11 Score=31.77 Aligned_cols=75 Identities=12% Similarity=0.067 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHcCCCCCcchHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCcccCCCCCCceeHHHHHHHHHhCCChH
Q 046221 53 EKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQ 132 (572)
Q Consensus 53 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 132 (572)
+.|...|-.+...+.- +.......+..|--..+.+++..++-++.+.....+ .+|+..+.+|+..+.+.|+++
T Consensus 123 ~~A~~~fL~~E~~~~l-~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~------~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 123 QEALRRFLQLEGTPEL-ETAELQYALATYYTKRDPEKTIQLLLRALELSNPDD------NFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred HHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCC------CCCHHHHHHHHHHHHHhcchh
Confidence 5677777777766633 334444445555557788888888888877655432 367778888888888888877
Q ss_pred HH
Q 046221 133 QA 134 (572)
Q Consensus 133 ~a 134 (572)
.|
T Consensus 196 ~A 197 (203)
T PF11207_consen 196 QA 197 (203)
T ss_pred hh
Confidence 76
No 342
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=80.03 E-value=17 Score=32.22 Aligned_cols=86 Identities=15% Similarity=0.125 Sum_probs=54.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHH---
Q 046221 427 IYGYGVNGHGETALALYHKMTET--GEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLL--- 501 (572)
Q Consensus 427 ~~~~~~~~~~~~A~~~~~~~~~~--g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~--- 501 (572)
|.+++..+++.+++...-+--+. .++| .....-|-.|.+.|.+..+.++-..-++..+ .-+..-|..+++.|
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPp--kIleLCILLysKv~Ep~amlev~~~WL~~p~-Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPP--KILELCILLYSKVQEPAAMLEVASAWLQDPS-NQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcc-cCCchhhHHHHHHHHHH
Confidence 67888888888877654443331 1333 4445555567888888888887777764322 22233466666544
Q ss_pred --HhhCChhHHHHHHH
Q 046221 502 --ARAGCLSDASGLAG 515 (572)
Q Consensus 502 --~~~g~~~~A~~~~~ 515 (572)
.-.|.+++|++++.
T Consensus 167 VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVV 182 (309)
T ss_pred HHhccccHHHHHHHHh
Confidence 45688888888883
No 343
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=79.34 E-value=47 Score=29.84 Aligned_cols=58 Identities=17% Similarity=0.076 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhhCChhHHHHHHHhccC--CCChHHHHHHHHHHhhhcCCHHHHHHHHHHHH
Q 046221 493 HYGCVVDLLARAGCLSDASGLAGKLLE--GMGPNIWRALLSGCVLHVGRFQDAEALRSGSQ 551 (572)
Q Consensus 493 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~g~~~~A~~~~~~m~ 551 (572)
++......|..+|.+.+|.++-++... +.+...|..|+..+... |+--.|.+.++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~-gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATL-GDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHh-ccchhhhhHHHHHH
Confidence 445556788999999999999999987 55666788888888776 99888888888874
No 344
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=78.83 E-value=2.2 Score=23.27 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=10.9
Q ss_pred HHHHHHhhCChhHHHHHHHhcc
Q 046221 497 VVDLLARAGCLSDASGLAGKLL 518 (572)
Q Consensus 497 l~~~~~~~g~~~~A~~~~~~~~ 518 (572)
+..++.+.|++++|.+.|+++.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHH
Confidence 3444445555555555555444
No 345
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=78.44 E-value=35 Score=33.05 Aligned_cols=107 Identities=21% Similarity=0.204 Sum_probs=62.5
Q ss_pred HHhcCChHHHHHHHHHHH---hcC--CCCC--H-HHHHHHHHHHhccCChHHHHHHHHHhHH------hcCCCCCh----
Q 046221 430 YGVNGHGETALALYHKMT---ETG--EVPD--S-STYLSILNACGHAGLTNDGLVIFNQMIE------ENKVKPSQ---- 491 (572)
Q Consensus 430 ~~~~~~~~~A~~~~~~~~---~~g--~~p~--~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~---- 491 (572)
+.-.|++.+|.+++...- ..| +.|. . ..++.|.-.+.+.|.+.-+..+|.++++ .+|++|..
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 344677777777664421 112 1221 1 2234455555666777777777666654 23444432
Q ss_pred ------hHHHHHHHHHHhhCChhHHHHHHHhccC--CCChHHHHHHHHHHhhh
Q 046221 492 ------EHYGCVVDLLARAGCLSDASGLAGKLLE--GMGPNIWRALLSGCVLH 536 (572)
Q Consensus 492 ------~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~ 536 (572)
.+.....-.|...|++-.|.+.|.+... ..+|..|-.|...|...
T Consensus 330 s~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 330 SQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 2233344567788888888888888776 67777888887777543
No 346
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=78.38 E-value=96 Score=32.82 Aligned_cols=22 Identities=9% Similarity=0.072 Sum_probs=13.7
Q ss_pred HHHHHHhccCChHHHHHHHHHh
Q 046221 460 SILNACGHAGLTNDGLVIFNQM 481 (572)
Q Consensus 460 ~l~~~~~~~g~~~~a~~~~~~~ 481 (572)
.|+......|+++.|...++++
T Consensus 623 ~LA~l~~~~Gdl~~A~~~l~~~ 644 (894)
T COG2909 623 MLAELEFLRGDLDKALAQLDEL 644 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHH
Confidence 4555566666666666666655
No 347
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=78.17 E-value=1.6e+02 Score=35.27 Aligned_cols=60 Identities=18% Similarity=0.102 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC
Q 046221 456 STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 456 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
.+|....+..-+.|+++.|...+-++.+.. .| ..+.-..+.+...|+...|+.++++..+
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e~r--~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~ 1730 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKESR--LP--EIVLERAKLLWQTGDELNALSVLQEILS 1730 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cc--hHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 566667777777777777777666664322 22 2444455667777777777777776553
No 348
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=77.95 E-value=20 Score=28.48 Aligned_cols=82 Identities=10% Similarity=0.049 Sum_probs=64.7
Q ss_pred hhhHHHHHhhcCChhhHHHHhccCCC---------CChhhHHHHHHHHhhCCC-hHHHHHHHHHHHHcCCCCCcchHHHH
Q 046221 8 SSKLLSNYFKSGKIKEAENLFDEIPE---------KNVVSWSIVIHGYSINGF-HEKSMKAFSHMMLSGLLPNSFTMVGV 77 (572)
Q Consensus 8 ~~~l~~~~~~~~~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~l 77 (572)
.|+++.-....+++...+.+++.+.. .+...|+.++.+..+... ---+..+|+.|.+.+.+++...|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 46677777777888888888887753 456789999999977666 44678889999998899999999999
Q ss_pred HHHHcCCCChHH
Q 046221 78 LVAAAGLQNLEL 89 (572)
Q Consensus 78 l~~~~~~g~~~~ 89 (572)
+.++.+....+.
T Consensus 122 i~~~l~g~~~~~ 133 (145)
T PF13762_consen 122 IKAALRGYFHDS 133 (145)
T ss_pred HHHHHcCCCCcc
Confidence 999877644443
No 349
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=77.47 E-value=45 Score=28.57 Aligned_cols=126 Identities=17% Similarity=0.119 Sum_probs=73.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHh-cCCCCChhHHHHHHH
Q 046221 422 SWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNACGHAGLTNDGLVIFNQMIEE-NKVKPSQEHYGCVVD 499 (572)
Q Consensus 422 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~ 499 (572)
|.+.-++.+.+.+..++|+...++-.+. +| |..+-..+++.++-.|++++|..-++-+-+- ....+-..+|..++.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 3445567778888899999888777764 56 5577778888999999999998877755321 112233446666665
Q ss_pred HHHhhCChhHHH-HHHHhccC-----CCChHHHHHHHHHHhhhcCCHHH-HHHHHHHHHhCCCC
Q 046221 500 LLARAGCLSDAS-GLAGKLLE-----GMGPNIWRALLSGCVLHVGRFQD-AEALRSGSQKKGII 556 (572)
Q Consensus 500 ~~~~~g~~~~A~-~~~~~~~~-----~~~~~~~~~l~~~~~~~~g~~~~-A~~~~~~m~~~~~~ 556 (572)
+- .+. ++|.--.. .|.+.=-..|+.+...+.+...+ +..+-+...+++..
T Consensus 81 ~e-------a~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~ 137 (273)
T COG4455 81 CE-------AARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPV 137 (273)
T ss_pred HH-------HHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCC
Confidence 42 222 23332222 23333333455555444343444 45555555555443
No 350
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=77.35 E-value=48 Score=28.77 Aligned_cols=99 Identities=11% Similarity=0.097 Sum_probs=57.4
Q ss_pred hcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc---------------CCCCCHhHHHHHH
Q 046221 363 SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM---------------GFLRDVVSWNTII 427 (572)
Q Consensus 363 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------------~~~~~~~~~~~l~ 427 (572)
|.+..+..--.++.+-....+++-+..-..+++ +...|+...|+..++.- -..|.+.....++
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Confidence 334444333334444444444444444444333 45567777776666543 1237777777777
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 046221 428 YGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465 (572)
Q Consensus 428 ~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 465 (572)
..|.+ +++++|.+++.++-+.|..|... .+.+.+.+
T Consensus 247 ~~~~~-~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~ 282 (333)
T KOG0991|consen 247 QACLK-RNIDEALKILAELWKLGYSPEDI-ITTLFRVV 282 (333)
T ss_pred HHHHh-ccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHH
Confidence 76654 67899999999999988887432 23444444
No 351
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=77.28 E-value=18 Score=33.09 Aligned_cols=93 Identities=12% Similarity=-0.044 Sum_probs=62.8
Q ss_pred HHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc-CCC-CCHhHHHHHHHHHHhcCChH
Q 046221 360 LTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFL-RDVVSWNTIIYGYGVNGHGE 437 (572)
Q Consensus 360 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~ 437 (572)
...|.++|.+++|+..+....... +.++.++..-..+|.+...+..|+.-.... .+. .-...|..-+.+-...|...
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 356788999999999987765532 337777777888899999888887766655 221 11334444444444556677
Q ss_pred HHHHHHHHHHhcCCCCCH
Q 046221 438 TALALYHKMTETGEVPDS 455 (572)
Q Consensus 438 ~A~~~~~~~~~~g~~p~~ 455 (572)
+|.+-++..++ +.|+.
T Consensus 183 EAKkD~E~vL~--LEP~~ 198 (536)
T KOG4648|consen 183 EAKKDCETVLA--LEPKN 198 (536)
T ss_pred HHHHhHHHHHh--hCccc
Confidence 77777777776 67764
No 352
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.20 E-value=67 Score=30.43 Aligned_cols=53 Identities=19% Similarity=0.167 Sum_probs=23.9
Q ss_pred HHHHhhhcCChHHHHHHHHHc-----CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 046221 394 LISSYSKCGNVDLAYIVFEEM-----GFLRDVVSWNTIIYGYGVNGHGETALALYHKM 446 (572)
Q Consensus 394 l~~~~~~~g~~~~A~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 446 (572)
+.+-|..+|+++.|++.+.+. ..+.....|-.+|..-...|++.....+-.+.
T Consensus 156 l~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A 213 (466)
T KOG0686|consen 156 LGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKA 213 (466)
T ss_pred HHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHH
Confidence 444555556666666655554 11112233333444444444544444444333
No 353
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=76.42 E-value=99 Score=31.96 Aligned_cols=50 Identities=24% Similarity=0.233 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHhcCCCChhHHhHHHHHHHhCCCHHHHHHHHhhcCCCC
Q 046221 166 RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKD 215 (572)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (572)
.+--.++++.+++.-.+....-|..+..+|.-..+.+.+.++++++.+.|
T Consensus 191 ~efR~~vlr~lv~~y~~~~~PDy~~vc~c~v~Ldd~~~va~ll~kL~~e~ 240 (929)
T KOG2062|consen 191 REFRNKVLRLLVKTYLKLPSPDYFSVCQCYVFLDDAEAVADLLEKLVKED 240 (929)
T ss_pred HHHHHHHHHHHHHHHccCCCCCeeeeeeeeEEcCCHHHHHHHHHHHHhcc
Confidence 33344555555554333233335567778888888899999888887644
No 354
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=76.26 E-value=55 Score=31.65 Aligned_cols=99 Identities=14% Similarity=0.072 Sum_probs=54.6
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhH
Q 046221 430 YGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSD 509 (572)
Q Consensus 430 ~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 509 (572)
+...|+++.+...+...... +.....+..++++...+.|++++|..+-+-|+ .+.+ .++++...-.......|-+++
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l-~~ei-e~~ei~~iaa~sa~~l~~~d~ 409 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMML-SNEI-EDEEVLTVAAGSADALQLFDK 409 (831)
T ss_pred HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHh-cccc-CChhheeeecccHHHHhHHHH
Confidence 44567777777666555442 33445666667777777777777777666664 2222 233333333333344566666
Q ss_pred HHHHHHhccC--CCChHHHHHHHH
Q 046221 510 ASGLAGKLLE--GMGPNIWRALLS 531 (572)
Q Consensus 510 A~~~~~~~~~--~~~~~~~~~l~~ 531 (572)
+...+++... +|....|-..+.
T Consensus 410 ~~~~wk~~~~~~~~~~~g~v~~~~ 433 (831)
T PRK15180 410 SYHYWKRVLLLNPETQSGWVNFLS 433 (831)
T ss_pred HHHHHHHHhccCChhcccceeeec
Confidence 6666666554 444444544443
No 355
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.93 E-value=33 Score=34.18 Aligned_cols=109 Identities=15% Similarity=0.083 Sum_probs=72.2
Q ss_pred hhhHHHHHhhcCChhhHHHHhccC-------C--------------CCChhhHHHHHHHHhhCCChHHHHHHHHHHHHcC
Q 046221 8 SSKLLSNYFKSGKIKEAENLFDEI-------P--------------EKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSG 66 (572)
Q Consensus 8 ~~~l~~~~~~~~~~~~A~~~~~~~-------~--------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 66 (572)
-+.+.+.+.++|-.++|+++--.- . ..+..-|..|..+..+.+++..|.+.|.+.+.
T Consensus 617 rt~va~Fle~~g~~e~AL~~s~D~d~rFelal~lgrl~iA~~la~e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-- 694 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALELSTDPDQRFELALKLGRLDIAFDLAVEANSEVKWRQLGDAALSAGELPLASECFLRARD-- 694 (794)
T ss_pred hhhHHhHhhhccchHhhhhcCCChhhhhhhhhhcCcHHHHHHHHHhhcchHHHHHHHHHHhhcccchhHHHHHHhhcc--
Confidence 345666666666666666553211 0 13456688888888888888888888877654
Q ss_pred CCCCcchHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCcccCCCCCCceeHHHHHHHHHhCCChHHHHHHHHH
Q 046221 67 LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNF 140 (572)
Q Consensus 67 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 140 (572)
|..|+-.+...|+.+....+-....+.|. .|...-+|...|+++++++++..
T Consensus 695 -------~~~LlLl~t~~g~~~~l~~la~~~~~~g~---------------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 695 -------LGSLLLLYTSSGNAEGLAVLASLAKKQGK---------------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred -------hhhhhhhhhhcCChhHHHHHHHHHHhhcc---------------cchHHHHHHHcCCHHHHHHHHHh
Confidence 45666667777777766666666666553 34445567778888888887765
No 356
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=75.80 E-value=5.7 Score=23.85 Aligned_cols=24 Identities=25% Similarity=0.214 Sum_probs=15.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhc
Q 046221 426 IIYGYGVNGHGETALALYHKMTET 449 (572)
Q Consensus 426 l~~~~~~~~~~~~A~~~~~~~~~~ 449 (572)
|..+|...|+.+.|..++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455666666666666666666653
No 357
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=75.68 E-value=61 Score=29.14 Aligned_cols=33 Identities=18% Similarity=0.121 Sum_probs=22.1
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHhccCCCC
Q 046221 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITEKS 316 (572)
Q Consensus 284 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 316 (572)
-++.....+...|.+.|++.+|+..|-.-.+++
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~ 120 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPS 120 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChh
Confidence 456677788888999999988888776544333
No 358
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=75.53 E-value=65 Score=29.39 Aligned_cols=164 Identities=13% Similarity=0.105 Sum_probs=92.6
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHcCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 046221 374 QLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRD-VVSWNTIIYGYGVNGHGETALALYHKMTETGEV 452 (572)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~ 452 (572)
-+++.+...++-+........++.+.+.+..+-+..++.......+ +.. + .. +-.+.+.-++++.+. +.
T Consensus 21 PLlEFl~~r~iy~~keLle~k~~ll~~TNMiDy~md~~k~l~~sed~p~a---~----~e--kr~~Vla~lkeLe~e-v~ 90 (432)
T KOG2758|consen 21 PLLEFLSLRQIYDEKELLEAKLQLLNKTNMIDYVMDTYKNLHTSEDMPNA---L----VE--KRTEVLAELKELEEE-VA 90 (432)
T ss_pred HHHHHhhhhccCCHHHHHHHHHHHHcccchHHHHHHHHhcccccccchHH---H----HH--HHHHHHHHHHHHHHH-HH
Confidence 3455555666667777777777888888888888888888722111 111 1 00 112223333333332 11
Q ss_pred CCHHHH-H-HHHHHHhccCChHHHHHHHHHhHHhcCCCCChh-HHHHHHHHHHhhCChhHHHHHHHh---ccCCCChH--
Q 046221 453 PDSSTY-L-SILNACGHAGLTNDGLVIFNQMIEENKVKPSQE-HYGCVVDLLARAGCLSDASGLAGK---LLEGMGPN-- 524 (572)
Q Consensus 453 p~~~~~-~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~-- 524 (572)
|-.... + -++...- .-.+-...++.+.+..++.|+.. +...+.+....+|++..|-.++-. ...+|+..
T Consensus 91 piv~~le~Pd~~~~~~---~~k~~~~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~l 167 (432)
T KOG2758|consen 91 PIVKVLENPDLIAALR---SDKDRVQNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYL 167 (432)
T ss_pred HHHHHHcCHHHHHHHH---hhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhH
Confidence 111100 0 0111111 12223566777767888888754 666777888899999999887554 33366654
Q ss_pred --HHHHHHHHHhhhcCCHHHHHHHHHHHHh
Q 046221 525 --IWRALLSGCVLHVGRFQDAEALRSGSQK 552 (572)
Q Consensus 525 --~~~~l~~~~~~~~g~~~~A~~~~~~m~~ 552 (572)
.|.-+...... -+|+.|.+-+.++++
T Consensus 168 salwGKlASEIL~--qnWd~A~edL~rLre 195 (432)
T KOG2758|consen 168 SALWGKLASEILT--QNWDGALEDLTRLRE 195 (432)
T ss_pred HHHHHHHHHHHHH--hhHHHHHHHHHHHHH
Confidence 35545444443 699999887777653
No 359
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=75.53 E-value=74 Score=30.05 Aligned_cols=49 Identities=14% Similarity=0.081 Sum_probs=22.2
Q ss_pred HHHHhCCCHHHHHHHHhhcCCCC--cccHHHHHHHHHccCCHHHHHHHHHHHH
Q 046221 193 DMYSCLMDLDAAIQIFREMECKD--VISWTRMMGLFVDFEYAGDALKIFREMR 243 (572)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~ 243 (572)
.+..+.|+++...+........+ ...+..+... ..++++++...++...
T Consensus 6 eaaWrl~~Wd~l~~~~~~~~~~~~~~~~~~al~~l--~~~~~~~~~~~i~~~r 56 (352)
T PF02259_consen 6 EAAWRLGDWDLLEEYLSQSNEDSPEYSFYRALLAL--RQGDYDEAKKYIEKAR 56 (352)
T ss_pred HHHHhcCChhhHHHHHhhccCCChhHHHHHHHHHH--hCccHHHHHHHHHHHH
Confidence 34445555555444444444322 2222222222 5566666555555544
No 360
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=75.44 E-value=23 Score=29.25 Aligned_cols=60 Identities=15% Similarity=0.257 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhcCCCCCH-HHHHHHHHHHhccC----C-------hHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 046221 437 ETALALYHKMTETGEVPDS-STYLSILNACGHAG----L-------TNDGLVIFNQMIEENKVKPSQEHYGCVVDLL 501 (572)
Q Consensus 437 ~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g----~-------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 501 (572)
++|+.-|++.+. +.|+. .++..+..+|...+ + +++|...|+++.+ ..|+..+|..-++..
T Consensus 52 edAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~---~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 52 EDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD---EDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH---H-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh---cCCCcHHHHHHHHHH
Confidence 444555555555 56654 56666666654332 1 3344444444432 357777776655554
No 361
>PRK10941 hypothetical protein; Provisional
Probab=74.79 E-value=38 Score=30.52 Aligned_cols=76 Identities=12% Similarity=0.032 Sum_probs=42.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 046221 424 NTIIYGYGVNGHGETALALYHKMTETGEVPDS-STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLL 501 (572)
Q Consensus 424 ~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 501 (572)
+.+-.+|.+.++++.|+++.+.+.. +.|+. .-+.--.-.|.+.|.+..|..-++..++...-.|+.......+..+
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 3444556666666666666666666 44533 3344444456666666666666666665554445555544444443
No 362
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=74.50 E-value=1.4e+02 Score=32.66 Aligned_cols=167 Identities=12% Similarity=0.027 Sum_probs=78.2
Q ss_pred CHhHHHHHHHHhcccccHHHHHHHHHHHHHh----cCCCch--------hHHHHHHHHhhhcCChHHHHHHHHHcCCCCC
Q 046221 352 DSITLVSILTASGELAALEICLQLHGIAFEA----GFPRYR--------SVQNCLISSYSKCGNVDLAYIVFEEMGFLRD 419 (572)
Q Consensus 352 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 419 (572)
+..+...++-..+..|+++-+.+..+.+.+. ..+-+. ..|-.-+.++.....++++.+.+.......-
T Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 766 (932)
T PRK13184 687 DYRALADIFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNTDPTLI 766 (932)
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhCCHHHH
Confidence 3355555555566677777666655554431 111111 1122223444555556666554444421111
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHH
Q 046221 420 VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS--STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCV 497 (572)
Q Consensus 420 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 497 (572)
...+..++.-..-.++.+....+.+.+...-..... .....-+.+|.-..++++|-+++...-.+....-....+-..
T Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 846 (932)
T PRK13184 767 LYAFDLFAIQALLDEEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLY 846 (932)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHH
Confidence 233344443344445555555555555443111111 223445666777777777777776654333332223333333
Q ss_pred HHHHHhhCChhHHHHHHHhcc
Q 046221 498 VDLLARAGCLSDASGLAGKLL 518 (572)
Q Consensus 498 ~~~~~~~g~~~~A~~~~~~~~ 518 (572)
.--+.-.++.+-|..-|....
T Consensus 847 ~~~~~~~~~~~~~~~~~~~~~ 867 (932)
T PRK13184 847 GCYLALTEDREAAKAHFSGCR 867 (932)
T ss_pred HHHHHhcCchhHHHHHHhhcc
Confidence 333334455555555555554
No 363
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.63 E-value=1.2e+02 Score=31.60 Aligned_cols=168 Identities=12% Similarity=0.058 Sum_probs=92.1
Q ss_pred HHHHhhcCChhhHHHHhccCCC--C---ChhhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHcCCCC
Q 046221 12 LSNYFKSGKIKEAENLFDEIPE--K---NVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQN 86 (572)
Q Consensus 12 ~~~~~~~~~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 86 (572)
++.+.+.+.+++|+..-+.... + -...+...|..+...|++++|-...-.|... +..-|..-...++..+.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccc
Confidence 5677888899999998887765 2 2346778888888889999998888888743 33344444444444444
Q ss_pred hHHHHHHHHHHHHhcCCCCcccCCCCCCceeHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCh
Q 046221 87 LELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSR 166 (572)
Q Consensus 87 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 166 (572)
......++ |. + .+.-+...|..++..+.. .+...-.++..+- +++...-..++++ ...++
T Consensus 439 l~~Ia~~l---------Pt-~--~~rL~p~vYemvLve~L~-~~~~~F~e~i~~W-----p~~Lys~l~iisa--~~~q~ 498 (846)
T KOG2066|consen 439 LTDIAPYL---------PT-G--PPRLKPLVYEMVLVEFLA-SDVKGFLELIKEW-----PGHLYSVLTIISA--TEPQI 498 (846)
T ss_pred cchhhccC---------CC-C--CcccCchHHHHHHHHHHH-HHHHHHHHHHHhC-----ChhhhhhhHHHhh--cchHH
Confidence 33322210 00 0 011334578888777776 3333322222221 2222222222221 11111
Q ss_pred HHHHHHHHHHHHhcCCCChhHHhHHHHHHHhCCCHHHHHHHHhhcCCCC
Q 046221 167 ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKD 215 (572)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (572)
+ + . .-+......|+..|...+++..|.+++-...+++
T Consensus 499 ~----------q-~-Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~ 535 (846)
T KOG2066|consen 499 K----------Q-N-SESTALLEVLAHLYLYDNKYEKALPIYLKLQDKD 535 (846)
T ss_pred H----------h-h-ccchhHHHHHHHHHHHccChHHHHHHHHhccChH
Confidence 1 1 0 1111222337888888899999998888876544
No 364
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=73.30 E-value=13 Score=23.44 Aligned_cols=33 Identities=18% Similarity=0.061 Sum_probs=17.2
Q ss_pred HHHHHHhhCChhHHHHHHHhccC-CCChHHHHHH
Q 046221 497 VVDLLARAGCLSDASGLAGKLLE-GMGPNIWRAL 529 (572)
Q Consensus 497 l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l 529 (572)
+.-++.+.|++++|.+..+.+.+ .|+......|
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 33455566666666666666655 5554444433
No 365
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=73.15 E-value=16 Score=30.95 Aligned_cols=32 Identities=19% Similarity=0.152 Sum_probs=17.5
Q ss_pred CCChhHHHHHHHHHHhhCChhHHHHHHHhccC
Q 046221 488 KPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 488 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
.|+..+|..++.++...|+.++|.+..+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555555555555555555555555555543
No 366
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=72.77 E-value=9 Score=23.02 Aligned_cols=26 Identities=15% Similarity=0.158 Sum_probs=18.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCC
Q 046221 120 AIVAGFINNKLFQQAVLLFNFFRGSG 145 (572)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~m~~~~ 145 (572)
.|..+|...|+.+.|.+++++....|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 35667777777777777777776543
No 367
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.49 E-value=1.4e+02 Score=32.18 Aligned_cols=27 Identities=22% Similarity=0.495 Sum_probs=22.7
Q ss_pred hHHHHHHHHhhCCChHHHHHHHHHHHH
Q 046221 38 SWSIVIHGYSINGFHEKSMKAFSHMML 64 (572)
Q Consensus 38 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 64 (572)
-|..|+..|...|+.++|+++|.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 478888888888999999998888765
No 368
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=71.03 E-value=51 Score=26.23 Aligned_cols=78 Identities=17% Similarity=0.236 Sum_probs=50.7
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHc-CC-------CCCHhHHHHHHHHHHhcCC-hHHHHHHHHHHHhcCCCCCHHHHHHH
Q 046221 391 QNCLISSYSKCGNVDLAYIVFEEM-GF-------LRDVVSWNTIIYGYGVNGH-GETALALYHKMTETGEVPDSSTYLSI 461 (572)
Q Consensus 391 ~~~l~~~~~~~g~~~~A~~~~~~~-~~-------~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~g~~p~~~~~~~l 461 (572)
.|+++.-....+++.....+++.+ .+ ..+...|.+++.+..+..- --.+..+|+-|.+.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 466666666666777666666666 11 1455667777777755554 34456677777776777777777778
Q ss_pred HHHHhcc
Q 046221 462 LNACGHA 468 (572)
Q Consensus 462 ~~~~~~~ 468 (572)
+.++.+-
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 7776654
No 369
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=70.61 E-value=36 Score=28.18 Aligned_cols=48 Identities=13% Similarity=0.248 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHhcCCCCC--HHHHHH-----HHHHHhccCChHHHHHHHHHhHH
Q 046221 436 GETALALYHKMTETGEVPD--SSTYLS-----ILNACGHAGLTNDGLVIFNQMIE 483 (572)
Q Consensus 436 ~~~A~~~~~~~~~~g~~p~--~~~~~~-----l~~~~~~~g~~~~a~~~~~~~~~ 483 (572)
.+.|+.+|+.+.+.--.|. ...... .+..|.+.|.+++|.+++++...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 4677777777766532221 122222 23347777777777777777653
No 370
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=70.54 E-value=71 Score=27.66 Aligned_cols=29 Identities=14% Similarity=0.133 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhhCChhHHHHHHHhccCCC
Q 046221 493 HYGCVVDLLARAGCLSDASGLAGKLLEGM 521 (572)
Q Consensus 493 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 521 (572)
+...++....+.|+.++|.+.|.++...+
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 33445566667777777777777776633
No 371
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=69.88 E-value=86 Score=28.35 Aligned_cols=61 Identities=13% Similarity=0.105 Sum_probs=35.5
Q ss_pred CCCchhHHHHHHHHhhhcCChHHHHHHHHHc----CCCCCHhHHHHHHHHHHhcCChHHHHHHHH
Q 046221 384 FPRYRSVQNCLISSYSKCGNVDLAYIVFEEM----GFLRDVVSWNTIIYGYGVNGHGETALALYH 444 (572)
Q Consensus 384 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 444 (572)
-.++..+...+++.++..+++.+-.++++.. +...|...|..+|..-...|+..-..++.+
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 3455555556666666666666666666655 122455666666666666666554444443
No 372
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=69.50 E-value=41 Score=24.46 Aligned_cols=44 Identities=14% Similarity=0.131 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHh
Q 046221 438 TALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQM 481 (572)
Q Consensus 438 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 481 (572)
++.+-++.+....+.|++......+++|-+.+++..|+++|+-.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~v 68 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAI 68 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 44555555555556666666666666666666666666666655
No 373
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=69.21 E-value=53 Score=25.69 Aligned_cols=72 Identities=14% Similarity=0.087 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHHHHhccCC---hHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC-CCCh
Q 046221 452 VPDSSTYLSILNACGHAGL---TNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE-GMGP 523 (572)
Q Consensus 452 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~ 523 (572)
.++..+-..+..++.++.+ ..+.+.++++..++..-.-+.....-|.-++.+.|+++++.++++.+.+ .|+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence 4555565666666666554 3445567777764221111222333455566778888888877777665 4443
No 374
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.58 E-value=1.8e+02 Score=31.42 Aligned_cols=58 Identities=14% Similarity=0.168 Sum_probs=43.0
Q ss_pred hhhHHHHHhhcCChhhHHHHhccCCCCChhh-----HHHHHH---HHhhCCChHHHHHHHHHHHHc
Q 046221 8 SSKLLSNYFKSGKIKEAENLFDEIPEKNVVS-----WSIVIH---GYSINGFHEKSMKAFSHMMLS 65 (572)
Q Consensus 8 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~li~---~~~~~~~~~~a~~~~~~m~~~ 65 (572)
+..-+..+....++++|..+-+....|++.. +..... -+..++++++|.+.|+++...
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~d 375 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEID 375 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhccC
Confidence 5666778888888999999999888765542 222233 256789999999999997653
No 375
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=68.50 E-value=28 Score=25.21 Aligned_cols=63 Identities=13% Similarity=0.167 Sum_probs=32.5
Q ss_pred HhcCChHHHHHHHHHHHh----cCCCCC----HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhH
Q 046221 431 GVNGHGETALALYHKMTE----TGEVPD----SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEH 493 (572)
Q Consensus 431 ~~~~~~~~A~~~~~~~~~----~g~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 493 (572)
.+.|++..|.+.+.+..+ .+..+. ......+...+...|++++|...++++++...-.-|...
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~ 79 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRC 79 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHH
Confidence 456777777555444433 222221 122223444566777777777777777654333334433
No 376
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=68.29 E-value=84 Score=28.82 Aligned_cols=91 Identities=16% Similarity=0.166 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHhHHh---cCCCCChhHHHHH-HHHHHhhCChhHHHHHHHhccC-CCC------hH
Q 046221 456 STYLSILNACGHAGLTNDGLVIFNQMIEE---NKVKPSQEHYGCV-VDLLARAGCLSDASGLAGKLLE-GMG------PN 524 (572)
Q Consensus 456 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~-~~~------~~ 524 (572)
..+.....-|++.|+-+.|.+.+++-.++ .|.+.|+..+..= .-.|....-..+-++..+.+.+ ..| ..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 44555566688888888888877765443 3556665544322 2233333333333333444443 222 22
Q ss_pred HHHHHHHHHhhhcCCHHHHHHHHHH
Q 046221 525 IWRALLSGCVLHVGRFQDAEALRSG 549 (572)
Q Consensus 525 ~~~~l~~~~~~~~g~~~~A~~~~~~ 549 (572)
+|..+ |+....++++|..+|-.
T Consensus 185 vY~Gl---y~msvR~Fk~Aa~Lfld 206 (393)
T KOG0687|consen 185 VYQGL---YCMSVRNFKEAADLFLD 206 (393)
T ss_pred HHHHH---HHHHHHhHHHHHHHHHH
Confidence 34433 33334677777777755
No 377
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=68.20 E-value=12 Score=36.02 Aligned_cols=82 Identities=15% Similarity=0.005 Sum_probs=33.5
Q ss_pred hhhcCChHHHHHHHHHc-CCCCCHhHH-HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHhccCChHHH
Q 046221 398 YSKCGNVDLAYIVFEEM-GFLRDVVSW-NTIIYGYGVNGHGETALALYHKMTETGEVPDS-STYLSILNACGHAGLTNDG 474 (572)
Q Consensus 398 ~~~~g~~~~A~~~~~~~-~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~a 474 (572)
+.+.++++.|..++.++ ...|+...| ..-..++.+.+++..|+.=+.+..+. .|+. ..|..-..+|.+.+.+.+|
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--dP~~~K~Y~rrg~a~m~l~~~~~A 91 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIEL--DPTYIKAYVRRGTAVMALGEFKKA 91 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhc--CchhhheeeeccHHHHhHHHHHHH
Confidence 33444445555544444 333432222 22224444445555554444444442 2322 2333333333444444444
Q ss_pred HHHHHHh
Q 046221 475 LVIFNQM 481 (572)
Q Consensus 475 ~~~~~~~ 481 (572)
...|+..
T Consensus 92 ~~~l~~~ 98 (476)
T KOG0376|consen 92 LLDLEKV 98 (476)
T ss_pred HHHHHHh
Confidence 4444433
No 378
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.81 E-value=2.5 Score=38.38 Aligned_cols=85 Identities=16% Similarity=0.087 Sum_probs=57.3
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChh-HHHHHHHHHHhhCCh
Q 046221 430 YGVNGHGETALALYHKMTETGEVPD-SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQE-HYGCVVDLLARAGCL 507 (572)
Q Consensus 430 ~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~ 507 (572)
....|.++.|++.|...++. .|. ...|.--.+++.+.+++..|++-+..+++ +.||.. -|-.=..+-.-.|++
T Consensus 124 Aln~G~~~~ai~~~t~ai~l--np~~a~l~~kr~sv~lkl~kp~~airD~d~A~e---in~Dsa~~ykfrg~A~rllg~~ 198 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIEL--NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIE---INPDSAKGYKFRGYAERLLGNW 198 (377)
T ss_pred HhcCcchhhhhccccccccc--CCchhhhcccccceeeeccCCchhhhhhhhhhc---cCcccccccchhhHHHHHhhch
Confidence 34567788888888887774 444 36666677778888888888888877764 345543 233333344556888
Q ss_pred hHHHHHHHhccC
Q 046221 508 SDASGLAGKLLE 519 (572)
Q Consensus 508 ~~A~~~~~~~~~ 519 (572)
++|...+....+
T Consensus 199 e~aa~dl~~a~k 210 (377)
T KOG1308|consen 199 EEAAHDLALACK 210 (377)
T ss_pred HHHHHHHHHHHh
Confidence 888888887776
No 379
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=67.25 E-value=12 Score=24.65 Aligned_cols=29 Identities=10% Similarity=0.093 Sum_probs=15.2
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhH
Q 046221 454 DSSTYLSILNACGHAGLTNDGLVIFNQMI 482 (572)
Q Consensus 454 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 482 (572)
|..-.-.++.++...|++++|.++++++.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44444455555566666666665555553
No 380
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=66.94 E-value=70 Score=28.65 Aligned_cols=88 Identities=10% Similarity=0.041 Sum_probs=40.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHh-----
Q 046221 324 ISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSY----- 398 (572)
Q Consensus 324 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----- 398 (572)
|.+++..+++.+++...-+-- ....+.-+.....-|-.|++.+....+.++-.......-.-+..-|..+++.|
T Consensus 90 IQALAEmnrWreVLsWvlqyY-q~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYY-QVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHh-cCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 455555555555555444333 22212222222222333445555555554444444332222233344444444
Q ss_pred hhcCChHHHHHHHH
Q 046221 399 SKCGNVDLAYIVFE 412 (572)
Q Consensus 399 ~~~g~~~~A~~~~~ 412 (572)
.=.|.+++|+++..
T Consensus 169 lPLG~~~eAeelv~ 182 (309)
T PF07163_consen 169 LPLGHFSEAEELVV 182 (309)
T ss_pred hccccHHHHHHHHh
Confidence 34688888887773
No 381
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=66.59 E-value=11 Score=19.52 Aligned_cols=21 Identities=19% Similarity=0.214 Sum_probs=9.1
Q ss_pred HHHHHhccCChHHHHHHHHHh
Q 046221 461 ILNACGHAGLTNDGLVIFNQM 481 (572)
Q Consensus 461 l~~~~~~~g~~~~a~~~~~~~ 481 (572)
+...+...|++++|...++..
T Consensus 7 ~a~~~~~~~~~~~a~~~~~~~ 27 (34)
T smart00028 7 LGNAYLKLGDYDEALEYYEKA 27 (34)
T ss_pred HHHHHHHHhhHHHHHHHHHHH
Confidence 333444444444444444444
No 382
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=66.09 E-value=1.7e+02 Score=30.40 Aligned_cols=427 Identities=13% Similarity=0.112 Sum_probs=212.6
Q ss_pred CceeHHHHHHHHHhCCChHHHHHHHHHHH-hCCCCCCHh--hHHHHHHHHh-ccCChHHHHHHHHHHHHhcCCCChh---
Q 046221 114 YLVSCNAIVAGFINNKLFQQAVLLFNFFR-GSGLVPNAV--TMLTVIRGCV-ALGSRALCELIHGLTIKLGLILDVS--- 186 (572)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~-~~~~~p~~~--~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~--- 186 (572)
++..|..||. .|++.++-+. +..+.|... ++..+...+. ...+++.|+..+.+.....-.++..
T Consensus 29 ~l~~Y~kLI~---------~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k 99 (608)
T PF10345_consen 29 QLKQYYKLIA---------TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK 99 (608)
T ss_pred hHHHHHHHHH---------HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 3445666654 4566677666 334444333 4444555544 6779999999999776544333322
Q ss_pred --HHhHHHHHHHhCCCHHHHHHHHhhcCCC----Cc----ccHHHH-HHHHHccCCHHHHHHHHHHHHhCC---CCCCcc
Q 046221 187 --VNNSVLDMYSCLMDLDAAIQIFREMECK----DV----ISWTRM-MGLFVDFEYAGDALKIFREMRKSR---IICDTV 252 (572)
Q Consensus 187 --~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~----~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~ 252 (572)
....++..+.+.+... |....++..+. .. ..+..+ +..+...+++..|.+.++.+...- ..|-..
T Consensus 100 ~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~ 178 (608)
T PF10345_consen 100 FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF 178 (608)
T ss_pred HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence 2334566777776655 88877775541 11 122222 223333479999999998886542 223334
Q ss_pred chHHHHHHh--cccCChHHHHHHHHHHHHhCC---------CCCcchHHHHHHHH--HhcCChhHHHHHHhccC------
Q 046221 253 ALLNLISVN--AILGDLKRGKQLHAQVVLGGL---------QSELRLSNSIIAMY--SKCGDLDSSRSVFNQIT------ 313 (572)
Q Consensus 253 ~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~------ 313 (572)
.+..++.+. ...+..+++.+.+..+..... .|-..++..+++.+ ...|+++.+...++++.
T Consensus 179 v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~ 258 (608)
T PF10345_consen 179 VLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEI 258 (608)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 444455544 344666777777776644222 23344555555544 45677666655544432
Q ss_pred -CC--------C-------------------cchH---------HHHHH--HHHHcCChHHHHHHHHHHHhc--------
Q 046221 314 -EK--------S-------------------LVSW---------TAIIS--GYVQNGCAREALNQFIKMRQE-------- 346 (572)
Q Consensus 314 -~~--------~-------------------~~~~---------~~l~~--~~~~~~~~~~a~~~~~~~~~~-------- 346 (572)
.. | ...| .-++. ..+..+..++|.+++++..+.
T Consensus 259 ~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~ 338 (608)
T PF10345_consen 259 KKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKS 338 (608)
T ss_pred hcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccC
Confidence 11 0 1111 11122 223444444555555443211
Q ss_pred CCCCCCH-------hHHHHHHH---------HhcccccHHHHHHHHHHHHHhcCC-Cc-----hhHHHHHHH--HhhhcC
Q 046221 347 KTDSVDS-------ITLVSILT---------ASGELAALEICLQLHGIAFEAGFP-RY-----RSVQNCLIS--SYSKCG 402 (572)
Q Consensus 347 ~~~~~~~-------~~~~~ll~---------~~~~~~~~~~a~~~~~~~~~~~~~-~~-----~~~~~~l~~--~~~~~g 402 (572)
...++.. ..+...+. ...-.+++..+....+.+....-. |+ ...+..++. .+-..|
T Consensus 339 ~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g 418 (608)
T PF10345_consen 339 PSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTG 418 (608)
T ss_pred CCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcC
Confidence 1111111 11111111 223457788888888877764321 11 122222222 234569
Q ss_pred ChHHHHHHHH--------Hc-CCCCC--HhHHHHH----HHHHHhcCChHH--HHHHHHHHHhc-CCCCC--HHH-HHHH
Q 046221 403 NVDLAYIVFE--------EM-GFLRD--VVSWNTI----IYGYGVNGHGET--ALALYHKMTET-GEVPD--SST-YLSI 461 (572)
Q Consensus 403 ~~~~A~~~~~--------~~-~~~~~--~~~~~~l----~~~~~~~~~~~~--A~~~~~~~~~~-g~~p~--~~~-~~~l 461 (572)
+++.|...|. .. +..+. ...+..+ |.-+-...+.++ +..+++.+... .-.|+ ..+ +..+
T Consensus 419 ~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~ 498 (608)
T PF10345_consen 419 DLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLV 498 (608)
T ss_pred CHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHH
Confidence 9999999998 33 23233 2333221 111222223333 66666665542 12332 233 3333
Q ss_pred HHHHhcc--CChHHHHHHHHHhHHhc--CCCCChh---HHHHHHHHHHhhCChhHHHHHHHhccC---CC---ChHHHHH
Q 046221 462 LNACGHA--GLTNDGLVIFNQMIEEN--KVKPSQE---HYGCVVDLLARAGCLSDASGLAGKLLE---GM---GPNIWRA 528 (572)
Q Consensus 462 ~~~~~~~--g~~~~a~~~~~~~~~~~--~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~---~~~~~~~ 528 (572)
+.++... -...++...+.+.++.. ....+.. +++.+...+. .|+..+..+....... +. ....|..
T Consensus 499 ~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~ 577 (608)
T PF10345_consen 499 LATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHL 577 (608)
T ss_pred HHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 4443322 22346666665554433 1111211 2222223333 6888887766665433 22 4446744
Q ss_pred HHHH-----HhhhcCCHHHHHHHHHHHHh
Q 046221 529 LLSG-----CVLHVGRFQDAEALRSGSQK 552 (572)
Q Consensus 529 l~~~-----~~~~~g~~~~A~~~~~~m~~ 552 (572)
+..+ +.. .|+.++|.....+...
T Consensus 578 v~~~~l~~~~~~-~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 578 VASGMLADSYEV-QGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHHHHH-cCcHHHHHHHHHHHHH
Confidence 4443 334 4999999998877643
No 383
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=64.36 E-value=29 Score=21.33 Aligned_cols=34 Identities=12% Similarity=0.189 Sum_probs=21.3
Q ss_pred HHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 046221 125 FINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIR 158 (572)
Q Consensus 125 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 158 (572)
..+.|-.+++..++++|.+.|+..+...|..+++
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3445566666667777776676666666665554
No 384
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=63.63 E-value=1.3e+02 Score=28.13 Aligned_cols=59 Identities=14% Similarity=0.159 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 046221 438 TALALYHKMTETGEVP-DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDL 500 (572)
Q Consensus 438 ~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 500 (572)
.-+.+|+++++. .| +......++..+.+..+.++..+-|++++..+ +-+...|..+++.
T Consensus 49 ~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~--~~~~~LW~~yL~~ 108 (321)
T PF08424_consen 49 RKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN--PGSPELWREYLDF 108 (321)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCChHHHHHHHHH
Confidence 334455555554 23 22444445555555555555555555555432 2234445444443
No 385
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=63.21 E-value=1.4e+02 Score=28.44 Aligned_cols=172 Identities=11% Similarity=0.065 Sum_probs=87.0
Q ss_pred hHHHHHHHHhhCCChHHHHHHHHHHHHcC--CCCCcchHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCcccCCCCCCc
Q 046221 38 SWSIVIHGYSINGFHEKSMKAFSHMMLSG--LLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYL 115 (572)
Q Consensus 38 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (572)
.+.-+...|...|+++.|++.|.+.+.-- .+-....|..+|..-...|+|........+..+.-.........-.+-.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 56677788899999999999999966531 1223345666777777888888877777666554200000000001223
Q ss_pred eeHHHHHHHHHhCCChHHHHHHHHHHHhC-C-----CCCCHhhHHHHHHHHhccCChHHHHHHHHHHHH-hcCCCChhHH
Q 046221 116 VSCNAIVAGFINNKLFQQAVLLFNFFRGS-G-----LVPNAVTMLTVIRGCVALGSRALCELIHGLTIK-LGLILDVSVN 188 (572)
Q Consensus 116 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~-----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~ 188 (572)
.++..+..... +++..|.+.|-..... . +.|...+....+.+++.-++-+.-..+.....- .-....+..+
T Consensus 232 ~C~agLa~L~l--kkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pqlr 309 (466)
T KOG0686|consen 232 KCAAGLANLLL--KKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQLR 309 (466)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHHH
Confidence 33334433333 3666666655433221 1 334444444444554444433322222211111 0112333444
Q ss_pred hHHHHHHHhCCCHHHHHHHHhhcCC
Q 046221 189 NSVLDMYSCLMDLDAAIQIFREMEC 213 (572)
Q Consensus 189 ~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (572)
..+...|. +++..+.++++++..
T Consensus 310 ~il~~fy~--sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 310 EILFKFYS--SKYASCLELLREIKP 332 (466)
T ss_pred HHHHHHhh--hhHHHHHHHHHHhcc
Confidence 44444443 467777777777654
No 386
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=62.83 E-value=11 Score=29.15 Aligned_cols=34 Identities=21% Similarity=0.288 Sum_probs=26.3
Q ss_pred HhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 046221 46 YSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAA 81 (572)
Q Consensus 46 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 81 (572)
+.+.|.-.+|..+|+.|+++|-+||. |+.|+...
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 34556777899999999999988875 67776543
No 387
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=62.51 E-value=61 Score=25.16 Aligned_cols=42 Identities=10% Similarity=0.041 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhcCCCCCH-HHHHHHHHHHhccCChHHHHHHHH
Q 046221 438 TALALYHKMTETGEVPDS-STYLSILNACGHAGLTNDGLVIFN 479 (572)
Q Consensus 438 ~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~ 479 (572)
.+..+|+.|.++|+--.. .-|......+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455555555555443322 344444444555555555555554
No 388
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=62.51 E-value=1.5e+02 Score=28.59 Aligned_cols=73 Identities=8% Similarity=0.043 Sum_probs=52.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-C-HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 046221 423 WNTIIYGYGVNGHGETALALYHKMTETGEVP-D-SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDL 500 (572)
Q Consensus 423 ~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 500 (572)
...|+.-|...|+..+|.+..+++- ++- + ...+..++.+.-+.|+-...+.+++..... ...|.+.+-+.
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLg---mPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~s-----glIT~nQMtkG 583 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELG---MPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKS-----GLITTNQMTKG 583 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhC---CCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-----CceeHHHhhhh
Confidence 4568888999999999988876643 332 3 377888999999999888888888887643 33355556566
Q ss_pred HHh
Q 046221 501 LAR 503 (572)
Q Consensus 501 ~~~ 503 (572)
|.|
T Consensus 584 f~R 586 (645)
T KOG0403|consen 584 FER 586 (645)
T ss_pred hhh
Confidence 543
No 389
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=62.50 E-value=59 Score=24.38 Aligned_cols=27 Identities=11% Similarity=0.377 Sum_probs=23.0
Q ss_pred cHHHHHHHHHccCCHHHHHHHHHHHHh
Q 046221 218 SWTRMMGLFVDFEYAGDALKIFREMRK 244 (572)
Q Consensus 218 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 244 (572)
-|..|+..|...|.+++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 578888888888999999998888876
No 390
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=62.17 E-value=1.1e+02 Score=26.61 Aligned_cols=54 Identities=24% Similarity=0.313 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHhcCCCC----CHHHHH-HHHHHHhccCChHHHHHHHHHhHHhcCCCC
Q 046221 436 GETALALYHKMTETGEVP----DSSTYL-SILNACGHAGLTNDGLVIFNQMIEENKVKP 489 (572)
Q Consensus 436 ~~~A~~~~~~~~~~g~~p----~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 489 (572)
...|.+.|.+..+..-.| +..+.. .+.....+.|+.++|.+.|.+++...+...
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 355777777776654332 333333 445567899999999999999986554433
No 391
>PF13934 ELYS: Nuclear pore complex assembly
Probab=62.15 E-value=1.1e+02 Score=26.80 Aligned_cols=13 Identities=15% Similarity=0.309 Sum_probs=5.4
Q ss_pred CChhHHHHHHHhc
Q 046221 505 GCLSDASGLAGKL 517 (572)
Q Consensus 505 g~~~~A~~~~~~~ 517 (572)
|.+.+|..+.+..
T Consensus 154 ~~v~EAf~~~R~~ 166 (226)
T PF13934_consen 154 GLVTEAFSFQRSY 166 (226)
T ss_pred CCHHHHHHHHHhC
Confidence 4444444444433
No 392
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.27 E-value=1.8e+02 Score=30.95 Aligned_cols=136 Identities=13% Similarity=0.104 Sum_probs=94.5
Q ss_pred HHHhhhcCChHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHH
Q 046221 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDG 474 (572)
Q Consensus 395 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a 474 (572)
......+|+++.|++.-.++ -+..+|..|...-...|+.+-|+..|++.+. |..|--.|.-.|+.++.
T Consensus 650 F~LaLe~gnle~ale~akkl---dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL 717 (1202)
T KOG0292|consen 650 FELALECGNLEVALEAAKKL---DDKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKL 717 (1202)
T ss_pred eeeehhcCCHHHHHHHHHhc---CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHH
Confidence 34456789999998888777 4567899999999999999999999988775 34444567788998888
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccCCCChHHHHHHHHHHhhhcCCHHHHHHHHHHHHhCC
Q 046221 475 LVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKG 554 (572)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~A~~~~~~m~~~~ 554 (572)
.++.+.+. ++-|.... +.. ..-.|+.++=..+++..-.. +..|... ..+ |.-++|.++.++...++
T Consensus 718 ~Km~~iae----~r~D~~~~--~qn-alYl~dv~ervkIl~n~g~~--~laylta----~~~-G~~~~ae~l~ee~~~~~ 783 (1202)
T KOG0292|consen 718 SKMMKIAE----IRNDATGQ--FQN-ALYLGDVKERVKILENGGQL--PLAYLTA----AAH-GLEDQAEKLGEELEKQV 783 (1202)
T ss_pred HHHHHHHH----hhhhhHHH--HHH-HHHhccHHHHHHHHHhcCcc--cHHHHHH----hhc-CcHHHHHHHHHhhcccc
Confidence 77776662 22333221 222 22468888888888877532 2233221 134 88899999999987755
Q ss_pred CC
Q 046221 555 II 556 (572)
Q Consensus 555 ~~ 556 (572)
+.
T Consensus 784 ~~ 785 (1202)
T KOG0292|consen 784 PS 785 (1202)
T ss_pred CC
Confidence 43
No 393
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=60.34 E-value=59 Score=23.11 Aligned_cols=38 Identities=11% Similarity=0.188 Sum_probs=27.9
Q ss_pred hcCChhHHHHHHhccCCCCcchHHHHHHHHHHcCChHHH
Q 046221 298 KCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREA 336 (572)
Q Consensus 298 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 336 (572)
..|+.+.|..++..+. +.+..|...+.++...|.-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4577778888888877 7777788888877777765544
No 394
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=60.30 E-value=1e+02 Score=25.86 Aligned_cols=52 Identities=17% Similarity=0.094 Sum_probs=27.9
Q ss_pred HHHHHhhhcCChHHHHHHHHHc-----------------CCCCCHhHHHHHHHHHHhcCChHHHHHHHH
Q 046221 393 CLISSYSKCGNVDLAYIVFEEM-----------------GFLRDVVSWNTIIYGYGVNGHGETALALYH 444 (572)
Q Consensus 393 ~l~~~~~~~g~~~~A~~~~~~~-----------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 444 (572)
+++..|.+..++.+..++++.+ +..+.-...|.-...+.+.|..+.|+.+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 4555566666666666666655 111223334444555555566665555554
No 395
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=60.05 E-value=56 Score=25.12 Aligned_cols=44 Identities=14% Similarity=0.167 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhH
Q 046221 439 ALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMI 482 (572)
Q Consensus 439 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 482 (572)
..+-++.+....+.|++.....-+++|-+.+++..|.++|+.+.
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34445555555666777777777777777777777777776663
No 396
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=59.86 E-value=31 Score=21.76 Aligned_cols=21 Identities=24% Similarity=0.096 Sum_probs=10.2
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 046221 428 YGYGVNGHGETALALYHKMTE 448 (572)
Q Consensus 428 ~~~~~~~~~~~A~~~~~~~~~ 448 (572)
-++.+.|++++|.+..+.+++
T Consensus 9 ig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 9 IGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHh
Confidence 344455555555555555555
No 397
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=59.40 E-value=28 Score=21.41 Aligned_cols=36 Identities=8% Similarity=0.041 Sum_probs=29.1
Q ss_pred HHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHH
Q 046221 45 GYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVA 80 (572)
Q Consensus 45 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 80 (572)
...+.|-..++..++++|.+.|+..+...|..++..
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 335678888999999999999998888888777653
No 398
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=59.25 E-value=1.6e+02 Score=29.68 Aligned_cols=148 Identities=16% Similarity=0.036 Sum_probs=84.3
Q ss_pred CCCCCCHhHHHHHHHHhcccc--cHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc-CCCCC--Hh
Q 046221 347 KTDSVDSITLVSILTASGELA--ALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFLRD--VV 421 (572)
Q Consensus 347 ~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~--~~ 421 (572)
+..-|+..+..+++.-...-- ..+.+..++-.| +....|--...|.-.-.+...|+...|.+.+... ...|- -+
T Consensus 565 k~~~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~-~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v 643 (886)
T KOG4507|consen 565 KAKMPDDHARKILLSRINNYTIPEEEIGSFLFHAI-NKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDV 643 (886)
T ss_pred cccCchHHHHHHHHHHHhcccCcHHHHHHHHHHHh-cCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcc
Confidence 444566666666555443321 223333333333 2222333223332222233468888888888776 33332 23
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 046221 422 SWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVV 498 (572)
Q Consensus 422 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 498 (572)
....|.....+.|-...|..++.+.+... ...+.++..+.+++....+++.|++.|+++++.. +-+..+-+.|.
T Consensus 644 ~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~--~~~~~~~~~l~ 717 (886)
T KOG4507|consen 644 PLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT--TKCPECENSLK 717 (886)
T ss_pred cHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC--CCChhhHHHHH
Confidence 34445566666677777888887777643 3445777788888888899999999999887543 33344444443
No 399
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=59.09 E-value=1.8e+02 Score=28.20 Aligned_cols=61 Identities=13% Similarity=0.153 Sum_probs=38.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhc
Q 046221 321 TAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG 383 (572)
Q Consensus 321 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 383 (572)
..|+.-|...|+..+|.+.++++ .-+.-.....+.+++.+..+.++-.....+++.....|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeL--gmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKEL--GMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHh--CCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 45667777777777777777776 34444455566666666666666665555555555544
No 400
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=59.09 E-value=1.4e+02 Score=27.20 Aligned_cols=16 Identities=19% Similarity=0.058 Sum_probs=9.6
Q ss_pred HcCChHHHHHHHHHHH
Q 046221 329 QNGCAREALNQFIKMR 344 (572)
Q Consensus 329 ~~~~~~~a~~~~~~~~ 344 (572)
..+++..+...+....
T Consensus 53 ~~~~~~~a~~~~~~a~ 68 (292)
T COG0790 53 YPPDYAKALKSYEKAA 68 (292)
T ss_pred ccccHHHHHHHHHHhh
Confidence 4455666666666664
No 401
>PRK12798 chemotaxis protein; Reviewed
Probab=59.07 E-value=1.7e+02 Score=28.09 Aligned_cols=184 Identities=10% Similarity=0.014 Sum_probs=99.4
Q ss_pred cccHHHHHHHHHHHHHhcCCCchhHHHHHHHHh-hhcCChHHHHHHHHHc-CCCCCH----hHHHHHHHHHHhcCChHHH
Q 046221 366 LAALEICLQLHGIAFEAGFPRYRSVQNCLISSY-SKCGNVDLAYIVFEEM-GFLRDV----VSWNTIIYGYGVNGHGETA 439 (572)
Q Consensus 366 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~-~~~~~~----~~~~~l~~~~~~~~~~~~A 439 (572)
.|+.+++.+.+..+.....++...-|-.|+.+- ....+...|+++|+.. -..|.. ....--+......|+.+++
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf 204 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKF 204 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHH
Confidence 467777888887777766777777676666654 3456788888888877 222332 2333334455677887776
Q ss_pred HHHHHHHHhc-CCCCCHHHH-HHHHHHHhccC---ChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHH
Q 046221 440 LALYHKMTET-GEVPDSSTY-LSILNACGHAG---LTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLA 514 (572)
Q Consensus 440 ~~~~~~~~~~-g~~p~~~~~-~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 514 (572)
..+-..-... ...|=..-| ..+..+..+.+ ..+....++..|- -.--..+|..+...-.-.|+.+-|.-..
T Consensus 205 ~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d----~~~q~~lYL~iAR~Ali~Gk~~lA~~As 280 (421)
T PRK12798 205 EALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMD----PERQRELYLRIARAALIDGKTELARFAS 280 (421)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcC----chhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 6554443332 122322222 22222333332 2333333333331 1112346777777777788888877777
Q ss_pred HhccC-----CCChH---HHHHHHHHHhhhcCCHHHHHHHHHHHHhCCCC
Q 046221 515 GKLLE-----GMGPN---IWRALLSGCVLHVGRFQDAEALRSGSQKKGII 556 (572)
Q Consensus 515 ~~~~~-----~~~~~---~~~~l~~~~~~~~g~~~~A~~~~~~m~~~~~~ 556 (572)
++... ..+.. .|..... .-..+.+++.+.+..+-+..+.
T Consensus 281 ~~A~~L~~~~~~~~~ra~LY~aaa~---v~s~~~~~al~~L~~I~~~~L~ 327 (421)
T PRK12798 281 ERALKLADPDSADAARARLYRGAAL---VASDDAESALEELSQIDRDKLS 327 (421)
T ss_pred HHHHHhccCCCcchHHHHHHHHHHc---cCcccHHHHHHHHhcCChhhCC
Confidence 77655 11111 1222222 1236677777777776555544
No 402
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=58.96 E-value=1.4e+02 Score=26.97 Aligned_cols=66 Identities=14% Similarity=0.101 Sum_probs=31.0
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHH----hcCCCCCHH-HHHHHHHHHhccCChHHHHHHHHHhHHhc
Q 046221 420 VVSWNTIIYGYGVNGHGETALALYHKMT----ETGEVPDSS-TYLSILNACGHAGLTNDGLVIFNQMIEEN 485 (572)
Q Consensus 420 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 485 (572)
...+..+..-|++.++.+.+.++..+.. ..|.+.|.. +-..|.-.|....-.++-++..+.+++++
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkG 185 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKG 185 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhC
Confidence 4455555566666666665555444432 234444432 22222223333334555555555555443
No 403
>PRK10941 hypothetical protein; Provisional
Probab=58.96 E-value=85 Score=28.34 Aligned_cols=75 Identities=11% Similarity=-0.040 Sum_probs=55.4
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC----CCChHHHHHHHHHH
Q 046221 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE----GMGPNIWRALLSGC 533 (572)
Q Consensus 458 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~l~~~~ 533 (572)
.+.+-.+|.+.++++.|+.+.+.++.-. |.++.-+.--+-.|.+.|.+..|..-++...+ .|+.......+...
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~--P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD--PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 4556678999999999999999998543 44455566677789999999999987776654 55555555555554
Q ss_pred h
Q 046221 534 V 534 (572)
Q Consensus 534 ~ 534 (572)
.
T Consensus 262 ~ 262 (269)
T PRK10941 262 E 262 (269)
T ss_pred h
Confidence 3
No 404
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.90 E-value=2.5e+02 Score=29.93 Aligned_cols=44 Identities=18% Similarity=0.289 Sum_probs=22.1
Q ss_pred HHHHhcCChhHHHHHHhccCCCCcchHHHHHHHHHHcCChHHHHHHHHH
Q 046221 294 AMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIK 342 (572)
Q Consensus 294 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 342 (572)
..+...|+.+....+-.-+. -|..++.-+++.+.+.+|++++..
T Consensus 512 ~l~~~~~~~e~ll~fA~l~~-----d~~~vv~~~~q~e~yeeaLevL~~ 555 (911)
T KOG2034|consen 512 QLLASHGRQEELLQFANLIK-----DYEFVVSYWIQQENYEEALEVLLN 555 (911)
T ss_pred HHHHHccCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444455444443333222 245555666666666666665543
No 405
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=57.99 E-value=39 Score=33.54 Aligned_cols=97 Identities=16% Similarity=0.110 Sum_probs=71.3
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChh
Q 046221 431 GVNGHGETALALYHKMTETGEVPD--SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLS 508 (572)
Q Consensus 431 ~~~~~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 508 (572)
.-.|+...|.+.+..... ..|. .+....|.+...+.|...+|..++.+.+.-. -..+.++..+..++.-..+.+
T Consensus 618 r~~gn~~~a~~cl~~a~~--~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~--~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALN--LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN--SSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred eecCCcHHHHHHHHHHhc--cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc--ccCchHHHhcchhHHHHhhhH
Confidence 446888999998888776 4553 3566777788888888889999988876543 344557888889999999999
Q ss_pred HHHHHHHhccC--CCChHHHHHHHH
Q 046221 509 DASGLAGKLLE--GMGPNIWRALLS 531 (572)
Q Consensus 509 ~A~~~~~~~~~--~~~~~~~~~l~~ 531 (572)
.|++-|+.+.. +.++..-+.|..
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECENSLKL 718 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHH
Confidence 99999998876 334444444433
No 406
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=57.92 E-value=38 Score=31.10 Aligned_cols=60 Identities=18% Similarity=0.232 Sum_probs=39.3
Q ss_pred HHHHHHhccCChHHHHHHHHHhHHhcC--CCCChhHH--HHHHHHHHhhCChhHHHHHHHhccC
Q 046221 460 SILNACGHAGLTNDGLVIFNQMIEENK--VKPSQEHY--GCVVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 460 ~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
.++...-+.++.++|+++++++++.-. -.|+...| .....++...||..++.+.+++...
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 344445566688899998888865432 13455544 3445667788888888888777654
No 407
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=57.90 E-value=20 Score=32.34 Aligned_cols=43 Identities=14% Similarity=0.092 Sum_probs=30.8
Q ss_pred CCcee-HHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHH
Q 046221 113 PYLVS-CNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLT 155 (572)
Q Consensus 113 ~~~~~-~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 155 (572)
|++.. ||..|....+.||+++|+.++++..+.|+.--..+|..
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 44433 56888888888888888888888888886655555543
No 408
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=57.21 E-value=86 Score=28.19 Aligned_cols=96 Identities=10% Similarity=0.036 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHhHHh---cCCCCChhH-HHHHHHHHHhhCChhHHHHHHHhccCC-CChH---HH
Q 046221 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEE---NKVKPSQEH-YGCVVDLLARAGCLSDASGLAGKLLEG-MGPN---IW 526 (572)
Q Consensus 455 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~---~~ 526 (572)
...+..+..-|++.++.+.+.+++.+.+++ .|.+.|+.. -..|.-.|....-.++-++..+.+.++ .|-. -|
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 466777888899999999998887766543 355555432 223333455555567777777777772 2211 23
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHHH
Q 046221 527 RALLSGCVLHVGRFQDAEALRSGS 550 (572)
Q Consensus 527 ~~l~~~~~~~~g~~~~A~~~~~~m 550 (572)
...-..+.....++.+|..++-..
T Consensus 195 K~Y~Gi~~m~~RnFkeAa~Ll~d~ 218 (412)
T COG5187 195 KVYKGIFKMMRRNFKEAAILLSDI 218 (412)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Confidence 333333333347788888777664
No 409
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=57.19 E-value=72 Score=23.09 Aligned_cols=55 Identities=15% Similarity=0.119 Sum_probs=35.9
Q ss_pred HhccCChHHHHHHHHHhHHhcCC--CCC-----hhHHHHHHHHHHhhCChhHHHHHHHhccC
Q 046221 465 CGHAGLTNDGLVIFNQMIEENKV--KPS-----QEHYGCVVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 465 ~~~~g~~~~a~~~~~~~~~~~~~--~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
..+.|++.+|.+.+.+..+.... .+. ......+.......|++++|...+++...
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45788999987766655432211 111 22333455677888999999999998876
No 410
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=56.51 E-value=1.2e+02 Score=29.23 Aligned_cols=61 Identities=18% Similarity=0.128 Sum_probs=40.4
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHhcC------CC-CChhHHHHHHHHHHhhCChhHHHHHHHhcc
Q 046221 457 TYLSILNACGHAGLTNDGLVIFNQMIEENK------VK-PSQEHYGCVVDLLARAGCLSDASGLAGKLL 518 (572)
Q Consensus 457 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 518 (572)
+...|++.++-.|++..|+++++.+ +-+. ++ -...++..++-+|...+++.+|.+.|....
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777888888888887755 2210 11 123366777778888888888888887654
No 411
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=56.38 E-value=78 Score=23.26 Aligned_cols=50 Identities=16% Similarity=0.256 Sum_probs=36.6
Q ss_pred HHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHHHHcCChHHHHHHHHHHH
Q 046221 293 IAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344 (572)
Q Consensus 293 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 344 (572)
+..+...|++++|..+.+...-||+..|-++-. .+.|..+.+..-+.++.
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLA 95 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 445667889999999988888888888876643 35666666666666664
No 412
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=55.54 E-value=57 Score=22.10 Aligned_cols=49 Identities=14% Similarity=0.073 Sum_probs=27.4
Q ss_pred ChhHHHHHHHhccC--CCChHHHHHHHHHHhhh-------------cCCHHHHHHHHHHHHhCC
Q 046221 506 CLSDASGLAGKLLE--GMGPNIWRALLSGCVLH-------------VGRFQDAEALRSGSQKKG 554 (572)
Q Consensus 506 ~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~-------------~g~~~~A~~~~~~m~~~~ 554 (572)
+.+.|..++..+.. +..|..||++...+.+| .|....|++-|.+|...+
T Consensus 12 DtEmA~~mL~DLr~dekRsPQLYnAI~k~L~RHkF~iskl~pd~~~LG~L~~aL~ey~~~~g~~ 75 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDEKRSPQLYNAIGKLLDRHKFQISKLQPDENILGELAAALEEYKKMVGAD 75 (82)
T ss_pred HHHHHHHHHHHhcchhhcChHHHHHHHHHHHHccchhhhcCccHHHHHHHHHHHHHHHHHcCCC
Confidence 44555555555544 44444555554444433 466777788888765443
No 413
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=55.04 E-value=98 Score=24.02 Aligned_cols=44 Identities=16% Similarity=0.185 Sum_probs=33.2
Q ss_pred HHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhhCChhHHHHHHHhc
Q 046221 473 DGLVIFNQMIEENKVKPS-QEHYGCVVDLLARAGCLSDASGLAGKL 517 (572)
Q Consensus 473 ~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 517 (572)
++.++|+.|. .+|+--. ...|......+...|++++|.++++..
T Consensus 81 ~~~~if~~l~-~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLY-SKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHH-HHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHH-HcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 8888999885 4445443 447778888899999999999998753
No 414
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=54.98 E-value=89 Score=24.10 Aligned_cols=47 Identities=17% Similarity=0.128 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHh
Q 046221 133 QAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKL 179 (572)
Q Consensus 133 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 179 (572)
+..+-++.+..-.+.|+.......+++|.+.+++..|..+|+-+...
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34455566666677888888888888888888888888888777653
No 415
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=54.73 E-value=2.2e+02 Score=27.89 Aligned_cols=117 Identities=17% Similarity=0.156 Sum_probs=71.9
Q ss_pred hhcCChhhHH-HHhccCC---C-CChhhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHcCCCChHHH
Q 046221 16 FKSGKIKEAE-NLFDEIP---E-KNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELA 90 (572)
Q Consensus 16 ~~~~~~~~A~-~~~~~~~---~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a 90 (572)
...|++..|- ++|+-+. . |+....-+. .+...|.++.+...+...... +.....+...+++...+.|++++|
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence 3456665543 3333332 2 443333333 345668888888887765432 345566788888888899999999
Q ss_pred HHHHHHHHHhcCCCCcccCCCCCCceeHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 046221 91 RSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSG 145 (572)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 145 (572)
...-+-|+...++. |. .........-..|-++++.-.|+++...+
T Consensus 377 ~s~a~~~l~~eie~--------~e--i~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 377 LSTAEMMLSNEIED--------EE--VLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHhccccCC--------hh--heeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 99888887766532 22 22222222334467788888888876543
No 416
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=54.47 E-value=40 Score=22.15 Aligned_cols=45 Identities=11% Similarity=0.020 Sum_probs=30.3
Q ss_pred hHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhcc
Q 046221 471 TNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518 (572)
Q Consensus 471 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 518 (572)
.+...++++.+... +-|....-.++.+|...|++++|.++++++.
T Consensus 6 ~~~~~~~~~~lR~~---RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 6 LEELEELIDSLRAQ---RHDFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44555555555321 3455566677889999999999999988875
No 417
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=53.66 E-value=4.9e+02 Score=31.68 Aligned_cols=65 Identities=17% Similarity=-0.024 Sum_probs=52.0
Q ss_pred hhHHHHHHHHHHhhCChhHHHHHHHhccCCCChHHHHHHHHHHhhhcCCHHHHHHHHHHHHhCCCC
Q 046221 491 QEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGII 556 (572)
Q Consensus 491 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~A~~~~~~m~~~~~~ 556 (572)
..+|....+.....|.++.|...+-++.+..-+..+-....-.+.. |+...|+.++++-.+...+
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~-gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQT-GDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhh-ccHHHHHHHHHHHHHhhcc
Confidence 3478888888888999999999988887733455566666667777 9999999999999877654
No 418
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=53.20 E-value=53 Score=29.22 Aligned_cols=21 Identities=10% Similarity=0.112 Sum_probs=10.7
Q ss_pred HHHHHhccCChHHHHHHHHHh
Q 046221 461 ILNACGHAGLTNDGLVIFNQM 481 (572)
Q Consensus 461 l~~~~~~~g~~~~a~~~~~~~ 481 (572)
+..-|.+.|++++|.++|+.+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 334455555555555555544
No 419
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=52.91 E-value=1.6e+02 Score=25.79 Aligned_cols=122 Identities=11% Similarity=0.061 Sum_probs=59.0
Q ss_pred HHHHHHhhhcCChHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCh
Q 046221 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLT 471 (572)
Q Consensus 392 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 471 (572)
..-+..|.+.-++.-|-...+++- .+.--.+-+--|.+..+.+--.++.+-....+++-+......++ +...|+.
T Consensus 134 RRtMEiyS~ttRFalaCN~s~KIi---EPIQSRCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDM 208 (333)
T KOG0991|consen 134 RRTMEIYSNTTRFALACNQSEKII---EPIQSRCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDM 208 (333)
T ss_pred HHHHHHHcccchhhhhhcchhhhh---hhHHhhhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchH
Confidence 334555555555555554444441 11111222333445544444444555455555555544444444 3467888
Q ss_pred HHHHHHHHHhHHhcCC-----------CCChhHHHHHHHHHHhhCChhHHHHHHHhccC
Q 046221 472 NDGLVIFNQMIEENKV-----------KPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 472 ~~a~~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
.+|+..++.-+...|. .|.+.....++..+ -.+++++|.+.+.++-+
T Consensus 209 RQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~ 266 (333)
T KOG0991|consen 209 RQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAELWK 266 (333)
T ss_pred HHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHHHH
Confidence 8888777765543332 23444444444333 33455555555555443
No 420
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=52.47 E-value=53 Score=27.83 Aligned_cols=41 Identities=20% Similarity=0.262 Sum_probs=32.5
Q ss_pred HHHhccC-CCChHHHHHHHHHHhhhcCCHHHHHHHHHHHHhCC
Q 046221 513 LAGKLLE-GMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKG 554 (572)
Q Consensus 513 ~~~~~~~-~~~~~~~~~l~~~~~~~~g~~~~A~~~~~~m~~~~ 554 (572)
..++... .|++.+|..++..+... |+.++|.+..+++..--
T Consensus 133 ~a~~~l~~~P~~~~~~~~a~~l~~~-G~~~eA~~~~~~~~~ly 174 (193)
T PF11846_consen 133 WAERLLRRRPDPNVYQRYALALALL-GDPEEARQWLARARRLY 174 (193)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC
Confidence 3333333 89999999999888877 99999999999886543
No 421
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=52.29 E-value=89 Score=31.77 Aligned_cols=77 Identities=13% Similarity=0.125 Sum_probs=52.5
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHHhcCCCCcccCCCCCCceeHHHHHHHHHhCCChH------HHHHHHHHHHhCCCCCC
Q 046221 76 GVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQ------QAVLLFNFFRGSGLVPN 149 (572)
Q Consensus 76 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~m~~~~~~p~ 149 (572)
+|+.+|...|++..+.++++......-... .=...||..|+.+.+.|.++ .|.+.++..+ +.-|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k-------~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d 102 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDK-------ILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGD 102 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCe-------eehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCc
Confidence 788888888888888888887765543211 22446888888888888764 3344444433 5557
Q ss_pred HhhHHHHHHHHhc
Q 046221 150 AVTMLTVIRGCVA 162 (572)
Q Consensus 150 ~~~~~~ll~~~~~ 162 (572)
..||..++++...
T Consensus 103 ~~t~all~~~sln 115 (1117)
T COG5108 103 SLTYALLCQASLN 115 (1117)
T ss_pred chHHHHHHHhhcC
Confidence 8888888776544
No 422
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=51.78 E-value=85 Score=22.35 Aligned_cols=35 Identities=6% Similarity=0.076 Sum_probs=18.4
Q ss_pred CCCHHHHHHHHhhcCCCCcccHHHHHHHHHccCCHH
Q 046221 198 LMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAG 233 (572)
Q Consensus 198 ~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 233 (572)
.|+.+.|.+++..++ +.+..|...+.++...|.-+
T Consensus 49 ~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 49 HGNESGARELLKRIV-QKEGWFSKFLQALRETEHHE 83 (88)
T ss_pred cCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchh
Confidence 345555555555555 55555555555555544433
No 423
>PF13934 ELYS: Nuclear pore complex assembly
Probab=51.17 E-value=1.7e+02 Score=25.63 Aligned_cols=112 Identities=12% Similarity=0.110 Sum_probs=68.4
Q ss_pred hcCCCchhHHHHHHHHhhh--cCChHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHH
Q 046221 382 AGFPRYRSVQNCLISSYSK--CGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459 (572)
Q Consensus 382 ~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~ 459 (572)
.++++. |...++++.. .+++++|.+.+..-.+.|+-. .-++.++...|+.+.|+.+++.+.-.. .+.....
T Consensus 73 f~ip~~---~~~~~~g~W~LD~~~~~~A~~~L~~ps~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~~~ 145 (226)
T PF13934_consen 73 FGIPPK---YIKFIQGFWLLDHGDFEEALELLSHPSLIPWFP--DKILQALLRRGDPKLALRYLRAVGPPL--SSPEALT 145 (226)
T ss_pred hCCCHH---HHHHHHHHHHhChHhHHHHHHHhCCCCCCcccH--HHHHHHHHHCCChhHHHHHHHhcCCCC--CCHHHHH
Confidence 345444 4456666654 577888888886554434322 236777777899999999998755421 1223333
Q ss_pred HHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhC
Q 046221 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAG 505 (572)
Q Consensus 460 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 505 (572)
.++.. ...+.+.+|..+-+...+. -....+..++..+....
T Consensus 146 ~~~~~-La~~~v~EAf~~~R~~~~~----~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 146 LYFVA-LANGLVTEAFSFQRSYPDE----LRRRLFEQLLEHCLEEC 186 (226)
T ss_pred HHHHH-HHcCCHHHHHHHHHhCchh----hhHHHHHHHHHHHHHHh
Confidence 44444 5568899999887765321 11446777777666444
No 424
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=51.17 E-value=74 Score=25.44 Aligned_cols=48 Identities=15% Similarity=0.092 Sum_probs=27.8
Q ss_pred eHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC
Q 046221 117 SCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164 (572)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 164 (572)
.-..++..+...++.-.|.++++++.+.+...+..|-...++.+...|
T Consensus 22 qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 22 QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 344566666666666677777777776665555555444444444433
No 425
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.09 E-value=1.7e+02 Score=25.62 Aligned_cols=62 Identities=10% Similarity=0.075 Sum_probs=37.1
Q ss_pred HHHHHhhhc-CChHHHHHHHHHc-----CCCCCHhHHHHHHHH---HHhcCChHHHHHHHHHHHhcCCCCC
Q 046221 393 CLISSYSKC-GNVDLAYIVFEEM-----GFLRDVVSWNTIIYG---YGVNGHGETALALYHKMTETGEVPD 454 (572)
Q Consensus 393 ~l~~~~~~~-g~~~~A~~~~~~~-----~~~~~~~~~~~l~~~---~~~~~~~~~A~~~~~~~~~~g~~p~ 454 (572)
.+...|-.. .+++.|+..++.. +...+...-..++.+ -...+++.+|+++|++.....+..+
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 344555443 6777777777776 332333333333333 3456788999999999887654443
No 426
>PF15469 Sec5: Exocyst complex component Sec5
Probab=50.39 E-value=70 Score=26.80 Aligned_cols=90 Identities=14% Similarity=0.131 Sum_probs=50.8
Q ss_pred HHHHHHHhccCChHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhhCChhHHHHHHHhccCCCChHHHHHHHHHHhhhc
Q 046221 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKP-SQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHV 537 (572)
Q Consensus 459 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~ 537 (572)
-.-+.-|.+.|+++.++..|.++....+-.. ....+..+ +.++..+.+.+. ...|..|.. ..
T Consensus 90 P~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v---------~~eve~ii~~~r----~~l~~~L~~----~~ 152 (182)
T PF15469_consen 90 PSNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKV---------WSEVEKIIEEFR----EKLWEKLLS----PP 152 (182)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHH---------HHHHHHHHHHHH----HHHHHHHhC----CC
Confidence 3455667788888888888887743221111 11222211 222222222222 122333322 12
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCceeEEE
Q 046221 538 GRFQDAEALRSGSQKKGIIKIPGISFLN 565 (572)
Q Consensus 538 g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 565 (572)
...++..+++..+.+-++..+|.+-|+.
T Consensus 153 ~s~~~~~~~i~~Ll~L~~~~dPi~~~l~ 180 (182)
T PF15469_consen 153 SSQEEFLKLIRKLLELNVEEDPIWYWLE 180 (182)
T ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 5677888888999999999999988764
No 427
>PRK13342 recombination factor protein RarA; Reviewed
Probab=50.23 E-value=2.5e+02 Score=27.38 Aligned_cols=44 Identities=20% Similarity=0.131 Sum_probs=27.8
Q ss_pred HHHHHHHHHH---cCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhc
Q 046221 320 WTAIISGYVQ---NGCAREALNQFIKMRQEKTDSVDSITLVSILTASG 364 (572)
Q Consensus 320 ~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 364 (572)
+..+++++.+ .++++.|+.++..|. ..|..|....-..+..++.
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l-~~G~d~~~i~rrl~~~a~e 276 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARML-EAGEDPLFIARRLVIIASE 276 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHH
Confidence 4444555444 477888888888888 7777766555544444433
No 428
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=50.06 E-value=3.3e+02 Score=28.57 Aligned_cols=94 Identities=17% Similarity=0.223 Sum_probs=44.4
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHcCCCCCHh----------HHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCCHHH
Q 046221 390 VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVV----------SWNTIIYGYGVNGHGETALALYHKMTET--GEVPDSST 457 (572)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----------~~~~l~~~~~~~~~~~~A~~~~~~~~~~--g~~p~~~~ 457 (572)
+...++-.|....+++...++.+.+.--||.. .|.-.++---+-|+-++|+...-.+.+. .+.||..+
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm~C 282 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDMYC 282 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCceee
Confidence 33444555555666666666666662223211 1222222223345666666665555543 24455432
Q ss_pred -----HHHH--HHHHhccCChHHHHHHHHHhHH
Q 046221 458 -----YLSI--LNACGHAGLTNDGLVIFNQMIE 483 (572)
Q Consensus 458 -----~~~l--~~~~~~~g~~~~a~~~~~~~~~ 483 (572)
|.-+ -..|-..+..+.|.++|+++.+
T Consensus 283 l~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe 315 (1226)
T KOG4279|consen 283 LCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE 315 (1226)
T ss_pred eechhhhhhhhccCCcchhhHHHHHHHHHHHhc
Confidence 2111 1224445556667777766653
No 429
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=48.79 E-value=2.1e+02 Score=26.01 Aligned_cols=111 Identities=11% Similarity=0.083 Sum_probs=50.8
Q ss_pred CHHHHHHHHhhcCC-----CCcccHHHHHHHHHcc-C-CHHHHHHHHHHHHh-CCCCCCccchHHHHHHhcccCChHHHH
Q 046221 200 DLDAAIQIFREMEC-----KDVISWTRMMGLFVDF-E-YAGDALKIFREMRK-SRIICDTVALLNLISVNAILGDLKRGK 271 (572)
Q Consensus 200 ~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~-~-~~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~~~~~~a~ 271 (572)
.+.+|+++|+.... .|...-..+++..... + ....-.++.+-+.. .+..++..+...++..++..+++..-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 45666666663221 3444444455444431 1 11112222222221 123445555555555555555555555
Q ss_pred HHHHHHHHh-CCCCCcchHHHHHHHHHhcCChhHHHHHHh
Q 046221 272 QLHAQVVLG-GLQSELRLSNSIIAMYSKCGDLDSSRSVFN 310 (572)
Q Consensus 272 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 310 (572)
+++...... +...|...|..+++.-.+.|+..-..++.+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 555554443 334445555555555555555444444433
No 430
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=48.61 E-value=3.2e+02 Score=28.11 Aligned_cols=27 Identities=15% Similarity=0.142 Sum_probs=15.4
Q ss_pred CcchhhHHHHHhhcCChhhHHHHhccCC
Q 046221 5 PYNSSKLLSNYFKSGKIKEAENLFDEIP 32 (572)
Q Consensus 5 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 32 (572)
+.-|+ .+..+.-.|.+++|..++....
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~s 175 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLHS 175 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TTT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhcc
Confidence 44454 5666666677777777774443
No 431
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=48.03 E-value=2.5e+02 Score=26.74 Aligned_cols=27 Identities=15% Similarity=-0.036 Sum_probs=17.4
Q ss_pred HhHHHHHHHHhcccccHHHHHHHHHHH
Q 046221 353 SITLVSILTASGELAALEICLQLHGIA 379 (572)
Q Consensus 353 ~~~~~~ll~~~~~~~~~~~a~~~~~~~ 379 (572)
..++..+-..+...|+.+.|.+++++.
T Consensus 40 idtLlqls~v~~~~gd~~~A~~lleRA 66 (360)
T PF04910_consen 40 IDTLLQLSEVYRQQGDHAQANDLLERA 66 (360)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345555666677777777777666554
No 432
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=47.55 E-value=4.3e+02 Score=29.21 Aligned_cols=132 Identities=11% Similarity=0.002 Sum_probs=73.6
Q ss_pred CchhHHHHHHHHhhhcCChHH-HHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 046221 386 RYRSVQNCLISSYSKCGNVDL-AYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA 464 (572)
Q Consensus 386 ~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 464 (572)
++..+-...+.++...+..+. +...+..+-..++...-...+.++...|....+...+..+.+ .++...-...+.+
T Consensus 754 ~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~a 830 (897)
T PRK13800 754 ENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARA 830 (897)
T ss_pred CCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHH
Confidence 444444555556665554332 234444442225666666777777777766555444545554 3555555566666
Q ss_pred HhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccCCCChHH
Q 046221 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNI 525 (572)
Q Consensus 465 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 525 (572)
+...+. +++...+..+++ .|+...-...+.++.+.+....+...+..+.++++..+
T Consensus 831 L~~l~~-~~a~~~L~~~L~----D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D~d~~V 886 (897)
T PRK13800 831 LAGAAA-DVAVPALVEALT----DPHLDVRKAAVLALTRWPGDPAARDALTTALTDSDADV 886 (897)
T ss_pred HHhccc-cchHHHHHHHhc----CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhCCCHHH
Confidence 766664 345555555543 45666666666666665434456666666665555544
No 433
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.40 E-value=4.4e+02 Score=29.36 Aligned_cols=117 Identities=16% Similarity=0.114 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChh----H
Q 046221 422 SWNTIIYGYGVNGHGETALALYHKMTETGEVPDS----STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQE----H 493 (572)
Q Consensus 422 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~ 493 (572)
-|...++.+-+.+-.+.+.++-...++. +.++. .+++.+.+-....|.+-+|...+- + .||.. .
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~---~----npdserrrdc 1056 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAIL---R----NPDSERRRDC 1056 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHH---c----CCcHHHHHHH
Confidence 4666777888888888888887777775 44432 457777788888888888766543 2 24543 5
Q ss_pred HHHHHHHHHhhCChh------------HHHH-HHHhccC--CCChHHHHHHHHHHhhhcCCHHHHHHH
Q 046221 494 YGCVVDLLARAGCLS------------DASG-LAGKLLE--GMGPNIWRALLSGCVLHVGRFQDAEAL 546 (572)
Q Consensus 494 ~~~l~~~~~~~g~~~------------~A~~-~~~~~~~--~~~~~~~~~l~~~~~~~~g~~~~A~~~ 546 (572)
...++..+..+|.++ +... +++.... +....-|..|+.++....++|..|-.+
T Consensus 1057 LRqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1057 LRQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HHHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 666777777777654 3444 3333322 222334555666666555888777543
No 434
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=46.36 E-value=2.2e+02 Score=25.59 Aligned_cols=142 Identities=11% Similarity=0.070 Sum_probs=68.1
Q ss_pred HHHHhCCChHHHHHH----HHHHHhCCCCCCHhhHHHHHHHHhccCChH-HHHHHHHHHHH---hc--CCCChhHHhHHH
Q 046221 123 AGFINNKLFQQAVLL----FNFFRGSGLVPNAVTMLTVIRGCVALGSRA-LCELIHGLTIK---LG--LILDVSVNNSVL 192 (572)
Q Consensus 123 ~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~---~~--~~~~~~~~~~l~ 192 (572)
..+.+.|+...|.++ ++-+.+.+.++|......++..+...+.-+ .-..+.+.+++ .| -.-++.....+.
T Consensus 18 ~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a 97 (260)
T PF04190_consen 18 LILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLA 97 (260)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHH
T ss_pred HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHH
Confidence 345566666555443 344444566777666666666555443211 23333333333 22 123556777788
Q ss_pred HHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCccch-HHHHHHhcccCChHHHH
Q 046221 193 DMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVAL-LNLISVNAILGDLKRGK 271 (572)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~ 271 (572)
..|.+.|++.+|+..|-.-..++...+..++......|...++ ..| ...+-.+.-.+++..|.
T Consensus 98 ~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~----------------dlfi~RaVL~yL~l~n~~~A~ 161 (260)
T PF04190_consen 98 EKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA----------------DLFIARAVLQYLCLGNLRDAN 161 (260)
T ss_dssp HHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H----------------HHHHHHHHHHHHHTTBHHHHH
T ss_pred HHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch----------------hHHHHHHHHHHHHhcCHHHHH
Confidence 8888999988888776554333333332233222222222222 222 22233455567788888
Q ss_pred HHHHHHHHh
Q 046221 272 QLHAQVVLG 280 (572)
Q Consensus 272 ~~~~~~~~~ 280 (572)
..+....+.
T Consensus 162 ~~~~~f~~~ 170 (260)
T PF04190_consen 162 ELFDTFTSK 170 (260)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877766654
No 435
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=46.28 E-value=45 Score=24.83 Aligned_cols=32 Identities=13% Similarity=0.025 Sum_probs=25.7
Q ss_pred HHHHHHhhCCChHHHHHHHHHHHHcCCCCCcch
Q 046221 41 IVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFT 73 (572)
Q Consensus 41 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 73 (572)
++++.+.+....++|+++.+.|.++| ..+...
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G-EIt~e~ 97 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG-EITPEE 97 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHH
Confidence 57778888889999999999999988 444433
No 436
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=46.15 E-value=3.5e+02 Score=27.86 Aligned_cols=59 Identities=7% Similarity=0.004 Sum_probs=30.5
Q ss_pred hhHHhHHHHHHHhCCCHHHHHHHHhhcCCCC-cccHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 046221 185 VSVNNSVLDMYSCLMDLDAAIQIFREMECKD-VISWTRMMGLFVDFEYAGDALKIFREMRKS 245 (572)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 245 (572)
...+..|+..+... +.+.-.++++++.. . ...+..++++....|-.....-+.+.+...
T Consensus 310 ~~~f~~lv~~lR~~-~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~ 369 (574)
T smart00638 310 AAKFLRLVRLLRTL-SEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNK 369 (574)
T ss_pred HHHHHHHHHHHHhC-CHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 33444444444332 45555555555543 2 455666666666666655444444444443
No 437
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=44.19 E-value=1.9e+02 Score=26.82 Aligned_cols=56 Identities=14% Similarity=0.014 Sum_probs=29.3
Q ss_pred hcCChHHHHHHHHHc------CCCCCHhHHHH--HHHHHHhcCChHHHHHHHHHHHh-----cCCCCCH
Q 046221 400 KCGNVDLAYIVFEEM------GFLRDVVSWNT--IIYGYGVNGHGETALALYHKMTE-----TGEVPDS 455 (572)
Q Consensus 400 ~~g~~~~A~~~~~~~------~~~~~~~~~~~--l~~~~~~~~~~~~A~~~~~~~~~-----~g~~p~~ 455 (572)
+.++.++|.++++++ ...|+.+.|.. ...++...||..++.+++++..+ .|++|+.
T Consensus 87 ~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~V 155 (380)
T KOG2908|consen 87 QISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNV 155 (380)
T ss_pred HhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhh
Confidence 344556666665555 22244444432 33445556666666666666555 4555544
No 438
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=43.97 E-value=2.2e+02 Score=24.81 Aligned_cols=102 Identities=19% Similarity=0.165 Sum_probs=56.2
Q ss_pred CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---CHHHH--HHHHHHHhccCChHHHHHHHHHhHHhcCCCC
Q 046221 415 GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP---DSSTY--LSILNACGHAGLTNDGLVIFNQMIEENKVKP 489 (572)
Q Consensus 415 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p---~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 489 (572)
...+...-+|.|+--|.-...+.+|...|.. +.|+.| |..++ ..-|......|+.++|++.....- -.-+.-
T Consensus 21 ~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~-PeiLd~ 97 (228)
T KOG2659|consen 21 KVSVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN-PEILDT 97 (228)
T ss_pred ccCcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC-hHHHcc
Confidence 4445556666766666666666666666643 334554 22222 334556677888888887777552 111233
Q ss_pred ChhHHHHHHH----HHHhhCChhHHHHHHHhccC
Q 046221 490 SQEHYGCVVD----LLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 490 ~~~~~~~l~~----~~~~~g~~~~A~~~~~~~~~ 519 (572)
|...+-.|.. -+.+.|..++|+++++.-..
T Consensus 98 n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA 131 (228)
T KOG2659|consen 98 NRELFFHLQQLHLIELIREGKTEEALEFAQTKLA 131 (228)
T ss_pred chhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHcc
Confidence 3322222211 23577777777777776554
No 439
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=43.92 E-value=1.6e+02 Score=23.22 Aligned_cols=65 Identities=6% Similarity=0.063 Sum_probs=38.8
Q ss_pred CCHhHHHHHHHHHHhcCC---hHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHhHH
Q 046221 418 RDVVSWNTIIYGYGVNGH---GETALALYHKMTETGEVPD--SSTYLSILNACGHAGLTNDGLVIFNQMIE 483 (572)
Q Consensus 418 ~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 483 (572)
++..+--.+..++.+..+ ..+.+.+++++.+. -.|+ ......|.-++.+.++++.+.++++..++
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 444444444455555443 45566777777762 2332 24444556677788888888888877765
No 440
>PHA02875 ankyrin repeat protein; Provisional
Probab=43.84 E-value=3.2e+02 Score=26.62 Aligned_cols=195 Identities=14% Similarity=0.042 Sum_probs=97.7
Q ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCHhh--HHHHHHHHhccCChHHHHHHHHHHHHhcCCCChh--HHhHHHHHHHhC
Q 046221 123 AGFINNKLFQQAVLLFNFFRGSGLVPNAVT--MLTVIRGCVALGSRALCELIHGLTIKLGLILDVS--VNNSVLDMYSCL 198 (572)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~ 198 (572)
...+..|+.+- ++.+.+.|..|+... ..+.+..++..|+.+ +.+.+++.|..|+.. .....+...+..
T Consensus 7 ~~A~~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~ 78 (413)
T PHA02875 7 CDAILFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEE 78 (413)
T ss_pred HHHHHhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHC
Confidence 33445566554 444555677666543 234455556677765 444555666555432 123345666778
Q ss_pred CCHHHHHHHHhhcCCC----CcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCccc--hHHHHHHhcccCChHHHHH
Q 046221 199 MDLDAAIQIFREMECK----DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVA--LLNLISVNAILGDLKRGKQ 272 (572)
Q Consensus 199 ~~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~ 272 (572)
|+.+.+..+++.-... +....+. +...+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+.+..
T Consensus 79 g~~~~v~~Ll~~~~~~~~~~~~~g~tp-L~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~ 153 (413)
T PHA02875 79 GDVKAVEELLDLGKFADDVFYKDGMTP-LHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIEL 153 (413)
T ss_pred CCHHHHHHHHHcCCcccccccCCCCCH-HHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 8888887777654321 1111222 3333445554 45555556676655432 2244555556677665444
Q ss_pred HHHHHHHhCCCCCc---chHHHHHHHHHhcCChhHHHHHHhccCCCCcc---hHHHHHHHHHHcCChHH
Q 046221 273 LHAQVVLGGLQSEL---RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLV---SWTAIISGYVQNGCARE 335 (572)
Q Consensus 273 ~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~ 335 (572)
++ +.|..++. .-.+ .+...+..|+.+-+.-+++.-..++.. -..+.+...+..|+.+-
T Consensus 154 Ll----~~g~~~~~~d~~g~T-pL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~i 217 (413)
T PHA02875 154 LI----DHKACLDIEDCCGCT-PLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDI 217 (413)
T ss_pred HH----hcCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHH
Confidence 44 44433322 1222 333445567777666666554433321 11234443445555443
No 441
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=42.45 E-value=49 Score=21.73 Aligned_cols=48 Identities=15% Similarity=0.062 Sum_probs=24.4
Q ss_pred HhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHc-----CCCChHHHHHH
Q 046221 46 YSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAA-----GLQNLELARSI 93 (572)
Q Consensus 46 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-----~~g~~~~a~~~ 93 (572)
+...|++-+|-++++.+-...-.+....+..+|...+ +.|+.+.|.++
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 4456677777777777654322233334444444333 45666555544
No 442
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.40 E-value=4e+02 Score=27.36 Aligned_cols=17 Identities=6% Similarity=-0.001 Sum_probs=10.2
Q ss_pred ccCCHHHHHHHHHHHHh
Q 046221 228 DFEYAGDALKIFREMRK 244 (572)
Q Consensus 228 ~~~~~~~a~~~~~~m~~ 244 (572)
...+++.|+.+|+...+
T Consensus 261 ~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAE 277 (552)
T ss_pred ccccHHHHHHHHHHHHH
Confidence 44566666666666654
No 443
>PRK13342 recombination factor protein RarA; Reviewed
Probab=42.37 E-value=3.4e+02 Score=26.54 Aligned_cols=47 Identities=21% Similarity=0.201 Sum_probs=32.4
Q ss_pred HHHHHHHHHh---cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccC
Q 046221 423 WNTIIYGYGV---NGHGETALALYHKMTETGEVPDSSTYLSILNACGHAG 469 (572)
Q Consensus 423 ~~~l~~~~~~---~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 469 (572)
+..++.++.+ .++.+.|+.++.+|.+.|..|....-..+..++-..|
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 3344445444 4788999999999999888887666666665655444
No 444
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=42.11 E-value=54 Score=29.73 Aligned_cols=37 Identities=24% Similarity=0.291 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHH
Q 046221 422 SWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTY 458 (572)
Q Consensus 422 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~ 458 (572)
-|+..|..-.+.||+++|+.++++..+.|+.--..+|
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 3566777777777777777777777777755433444
No 445
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=42.09 E-value=1.5e+02 Score=22.29 Aligned_cols=27 Identities=15% Similarity=0.229 Sum_probs=24.2
Q ss_pred eHHHHHHHHHhCCChHHHHHHHHHHHh
Q 046221 117 SCNAIVAGFINNKLFQQAVLLFNFFRG 143 (572)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 143 (572)
-|..|+..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 588999999999999999999998877
No 446
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=42.04 E-value=3.6e+02 Score=26.77 Aligned_cols=79 Identities=8% Similarity=-0.178 Sum_probs=49.7
Q ss_pred HHHHHHHHHHcCCCCCcchHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCcccCCCCCCceeHHHHHHHH-HhCCChHH
Q 046221 55 SMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGF-INNKLFQQ 133 (572)
Q Consensus 55 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~ 133 (572)
...+|+....+ .+-|...|...+.-+-+.+.+.+...++.+|+...+. ++..|-...... -.+.+++.
T Consensus 90 Iv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~----------~~dLWI~aA~wefe~n~ni~s 158 (568)
T KOG2396|consen 90 IVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPN----------NPDLWIYAAKWEFEINLNIES 158 (568)
T ss_pred HHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCC----------CchhHHhhhhhHHhhccchHH
Confidence 34455554433 3447778888887777777788888888888887762 333444333333 33344777
Q ss_pred HHHHHHHHHhC
Q 046221 134 AVLLFNFFRGS 144 (572)
Q Consensus 134 a~~~~~~m~~~ 144 (572)
|..+|..-.+.
T Consensus 159 aRalflrgLR~ 169 (568)
T KOG2396|consen 159 ARALFLRGLRF 169 (568)
T ss_pred HHHHHHHHhhc
Confidence 77777665553
No 447
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=41.92 E-value=1.6e+02 Score=22.60 Aligned_cols=83 Identities=17% Similarity=0.174 Sum_probs=36.8
Q ss_pred ccCChHHHHHHHHHhHHhcCCCCCh----------hHHHHHHHHHHhhCChhHHHHHHHhcc-------C--CCChHHHH
Q 046221 467 HAGLTNDGLVIFNQMIEENKVKPSQ----------EHYGCVVDLLARAGCLSDASGLAGKLL-------E--GMGPNIWR 527 (572)
Q Consensus 467 ~~g~~~~a~~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~--~~~~~~~~ 527 (572)
..|.+++|..-++.+++.....|.. ..+..|..++...|++++++.-.+... + ...-..|.
T Consensus 21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWI 100 (144)
T PF12968_consen 21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWI 100 (144)
T ss_dssp HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHH
Confidence 3345555555555444433322322 234445556666666665444333322 2 33334454
Q ss_pred HHHHH---HhhhcCCHHHHHHHHHH
Q 046221 528 ALLSG---CVLHVGRFQDAEALRSG 549 (572)
Q Consensus 528 ~l~~~---~~~~~g~~~~A~~~~~~ 549 (572)
..+-. -....|+.++|+..|+.
T Consensus 101 aaVfsra~Al~~~Gr~~eA~~~fr~ 125 (144)
T PF12968_consen 101 AAVFSRAVALEGLGRKEEALKEFRM 125 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHH
Confidence 43321 11225888888777764
No 448
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=41.18 E-value=1.5e+02 Score=22.16 Aligned_cols=78 Identities=13% Similarity=0.071 Sum_probs=29.8
Q ss_pred ChHHHHHHHHHHHHhcCCCChhHHhHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHh
Q 046221 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRK 244 (572)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 244 (572)
..++|..|.+.+...+. ....+--+-+..+.+.|++++|...=.....||...|-+|.. .+.|..+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 34444444444444331 112222222334445555555533223333345444444332 234445555555554443
Q ss_pred C
Q 046221 245 S 245 (572)
Q Consensus 245 ~ 245 (572)
+
T Consensus 98 ~ 98 (116)
T PF09477_consen 98 S 98 (116)
T ss_dssp -
T ss_pred C
Confidence 3
No 449
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=40.97 E-value=36 Score=26.47 Aligned_cols=30 Identities=33% Similarity=0.589 Sum_probs=20.5
Q ss_pred cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 046221 433 NGHGETALALYHKMTETGEVPDSSTYLSILNA 464 (572)
Q Consensus 433 ~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 464 (572)
.|.-..|..+|.+|++.|-+||. |+.|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 35566788888888888888864 3444443
No 450
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=40.95 E-value=1.5e+02 Score=22.15 Aligned_cols=75 Identities=12% Similarity=0.098 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHHHHcCChHHHHHHHHHHH
Q 046221 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344 (572)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 344 (572)
.++|..+.+.+...+. ....+--+-+..+...|++++|...=.....||...|-+|- -.+.|..+++...+.++.
T Consensus 22 H~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 22 HQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRLA 96 (116)
T ss_dssp HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHHH
Confidence 4455555555544432 22222233344566777787774444444456666665553 346677777777777663
No 451
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=40.58 E-value=2.2e+02 Score=29.22 Aligned_cols=75 Identities=12% Similarity=0.010 Sum_probs=48.9
Q ss_pred HHHHHhcccccHHHHHHHHHHHHHhc--CCCchhHHHHHHHHhhhcCChH------HHHHHHHHcCCCCCHhHHHHHHHH
Q 046221 358 SILTASGELAALEICLQLHGIAFEAG--FPRYRSVQNCLISSYSKCGNVD------LAYIVFEEMGFLRDVVSWNTIIYG 429 (572)
Q Consensus 358 ~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~------~A~~~~~~~~~~~~~~~~~~l~~~ 429 (572)
+++.+|...|++..+.++++.....+ -+.-...||..++.+.+.|.++ .|.+.+++..+.-|..||..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 77888888888888888887776543 2333456677777777777643 445555555555666777666655
Q ss_pred HHh
Q 046221 430 YGV 432 (572)
Q Consensus 430 ~~~ 432 (572)
-..
T Consensus 113 sln 115 (1117)
T COG5108 113 SLN 115 (1117)
T ss_pred hcC
Confidence 433
No 452
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=40.58 E-value=1.5e+02 Score=25.42 Aligned_cols=79 Identities=11% Similarity=0.154 Sum_probs=52.0
Q ss_pred ChHHHHHHHHHcCCC----------CCHhHHHHHHHHHHhcC---------ChHHHHHHHHHHHhcCCCCC-HHHHHHHH
Q 046221 403 NVDLAYIVFEEMGFL----------RDVVSWNTIIYGYGVNG---------HGETALALYHKMTETGEVPD-SSTYLSIL 462 (572)
Q Consensus 403 ~~~~A~~~~~~~~~~----------~~~~~~~~l~~~~~~~~---------~~~~A~~~~~~~~~~g~~p~-~~~~~~l~ 462 (572)
..+.|..++..||.. ....-|..+..+|.+.| +.+.-..+++..++.|++-= +..|.++|
T Consensus 136 ~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiI 215 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSII 215 (236)
T ss_pred eHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceecc
Confidence 467888888888221 34566888888888876 44556667777777765442 36677777
Q ss_pred HHHhccCChHHHHHHHHHh
Q 046221 463 NACGHAGLTNDGLVIFNQM 481 (572)
Q Consensus 463 ~~~~~~g~~~~a~~~~~~~ 481 (572)
+--...-++++..+++..+
T Consensus 216 Dk~tG~TrpedV~~l~~~~ 234 (236)
T TIGR03581 216 DKETGNTRVEDVKQLLAIV 234 (236)
T ss_pred ccccCCCCHHHHHHHHHHh
Confidence 6555555677777776644
No 453
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=40.55 E-value=2.4e+02 Score=24.39 Aligned_cols=61 Identities=13% Similarity=-0.042 Sum_probs=32.5
Q ss_pred hhHHhHHHHHHHhCCCHHHHHHHHhhcCCCCcc-cHHHHHH--HHHccCCHHHHHHHHHHHHhC
Q 046221 185 VSVNNSVLDMYSCLMDLDAAIQIFREMECKDVI-SWTRMMG--LFVDFEYAGDALKIFREMRKS 245 (572)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~li~--~~~~~~~~~~a~~~~~~m~~~ 245 (572)
+.+||-|.--+...|+++.|.+.|+...+-|+. -|..+=+ ++.-.|++.-|.+-+...-+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhc
Confidence 356666666666667777777777666654332 2222222 222346666666555554443
No 454
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=40.13 E-value=58 Score=17.07 Aligned_cols=15 Identities=13% Similarity=0.246 Sum_probs=8.2
Q ss_pred ChHHHHHHHHHhHHh
Q 046221 470 LTNDGLVIFNQMIEE 484 (572)
Q Consensus 470 ~~~~a~~~~~~~~~~ 484 (572)
+.+.|..+|+++++.
T Consensus 2 ~~~~~r~i~e~~l~~ 16 (33)
T smart00386 2 DIERARKIYERALEK 16 (33)
T ss_pred cHHHHHHHHHHHHHH
Confidence 455555666665543
No 455
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=39.99 E-value=1e+02 Score=25.48 Aligned_cols=67 Identities=10% Similarity=-0.063 Sum_probs=45.1
Q ss_pred hhhHHHHhccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHcCCCCh
Q 046221 21 IKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNL 87 (572)
Q Consensus 21 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 87 (572)
.+.+.++++...-..+..-..++..+...+..-.|.++++.+.+.+...+..|.-.-|..+...|-+
T Consensus 10 ~~~~~~~L~~~GlR~T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 10 LAQAEKLCAQRNVRLTPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 3445555544433444455667777777777888999999999988777777766666666665544
No 456
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=39.43 E-value=2.4e+02 Score=23.88 Aligned_cols=55 Identities=15% Similarity=0.213 Sum_probs=30.8
Q ss_pred HHHHHhcccCChHHHHHHHHHHHHhCCC--------------CCcchHHHHHHHHHhcCChhHHHHHHh
Q 046221 256 NLISVNAILGDLKRGKQLHAQVVLGGLQ--------------SELRLSNSIIAMYSKCGDLDSSRSVFN 310 (572)
Q Consensus 256 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~--------------~~~~~~~~l~~~~~~~~~~~~a~~~~~ 310 (572)
+++..|.+..++.++.++++.+.+..+. +--.+.|.....+.+.|.+|.|..+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 4455566666777777777776654321 222334555555556666666655555
No 457
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=39.25 E-value=1.2e+02 Score=29.67 Aligned_cols=104 Identities=13% Similarity=-0.017 Sum_probs=66.2
Q ss_pred HhhhcCChHHHHHHHHHcCC--------CC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHh-------cCCCCCH---
Q 046221 397 SYSKCGNVDLAYIVFEEMGF--------LR---DVVSWNTIIYGYGVNGHGETALALYHKMTE-------TGEVPDS--- 455 (572)
Q Consensus 397 ~~~~~g~~~~A~~~~~~~~~--------~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~g~~p~~--- 455 (572)
.+.-.|++..|.+++...++ .| ....||.|...+.+.|.+..+..+|.+..+ .|++|..
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 34557888888888776621 11 223345555555556666666666655543 4655532
Q ss_pred --------HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 046221 456 --------STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLAR 503 (572)
Q Consensus 456 --------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 503 (572)
.+|+ ..-.|...|++-.|.+.|.+.+... ..++..|-.|.++|..
T Consensus 329 ls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~vf--h~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 329 LSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHVF--HRNPRLWLRLAECCIM 381 (696)
T ss_pred hhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHH
Confidence 1232 2335778999999999999987654 5677889889888864
No 458
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=39.14 E-value=2.3e+02 Score=23.60 Aligned_cols=111 Identities=13% Similarity=0.156 Sum_probs=59.9
Q ss_pred hHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHH
Q 046221 404 VDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIE 483 (572)
Q Consensus 404 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 483 (572)
+++++..+.+.+..-|...-...+..-.+.| ..-..+.+++.+.|+ +..+....+..+......+.|...+..-..
T Consensus 54 Ie~Vi~~l~~~~~ldD~~fAe~~i~~r~~~g--~G~~rl~qeL~qkGi--~~~~Ie~aL~~~~~~~~~~~a~~~~~kk~~ 129 (174)
T COG2137 54 IEEVIDRLAEEGYLDDTRFAEAYIRSRSRKG--KGPARLKQELKQKGI--DDEIIEEALELIDEEDEQERARKVLRKKFK 129 (174)
T ss_pred HHHHHHHHHHcCcccHHHHHHHHHHHHHhcc--cChHHHHHHHHHcCC--CHHHHHHHHhccchHHHHHHHHHHHHHHhC
Confidence 4555555555566445444444444444444 334566777777774 334444555555555556666666655443
Q ss_pred hcCCCCChhHHHHHHHHHHhhC-ChhHHHHHHHhcc
Q 046221 484 ENKVKPSQEHYGCVVDLLARAG-CLSDASGLAGKLL 518 (572)
Q Consensus 484 ~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~ 518 (572)
..+.+|+..-...+...+.+.| .++.+..++..+.
T Consensus 130 ~~~~~~~~~~k~Ki~r~L~~rGFs~~~i~~~l~~~~ 165 (174)
T COG2137 130 RENKPPDKKEKAKIQRFLLRRGFSYEVIKEALNEAE 165 (174)
T ss_pred ccccCcchhHHHHHHHHHHHcCCCHHHHHHHHHHhh
Confidence 4434566544555555555555 4555555555543
No 459
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=39.10 E-value=1.4e+02 Score=24.59 Aligned_cols=47 Identities=11% Similarity=-0.003 Sum_probs=24.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC
Q 046221 118 CNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164 (572)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 164 (572)
-..++..+...++.-.|.++++.+.+.+..++..|..-.|..+...|
T Consensus 28 R~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 28 RLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 33444555444555556666666666555555555444444444444
No 460
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=38.87 E-value=1.5e+02 Score=29.62 Aligned_cols=21 Identities=24% Similarity=0.012 Sum_probs=13.6
Q ss_pred HHHHHhhCChhHHHHHHHhcc
Q 046221 498 VDLLARAGCLSDASGLAGKLL 518 (572)
Q Consensus 498 ~~~~~~~g~~~~A~~~~~~~~ 518 (572)
...+.|.+++++|..+.-++.
T Consensus 501 FhhLLR~~rfekAFlLAvdi~ 521 (545)
T PF11768_consen 501 FHHLLRYQRFEKAFLLAVDIG 521 (545)
T ss_pred HHHHHHhhHHHHHHHHHHhcc
Confidence 344556777777777766654
No 461
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=38.61 E-value=1.3e+02 Score=27.73 Aligned_cols=99 Identities=7% Similarity=-0.030 Sum_probs=0.0
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChh
Q 046221 429 GYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLS 508 (572)
Q Consensus 429 ~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 508 (572)
.|.++.+.+.--...+.+.+.....-...-..|..+..+.|+..+|.+.++.+.++..+-.-..+...|++++....-+.
T Consensus 249 ~yr~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYA 328 (556)
T KOG3807|consen 249 IYRQSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYA 328 (556)
T ss_pred HHhhHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhccC--CCChHHHH
Q 046221 509 DASGLAGKLLE--GMGPNIWR 527 (572)
Q Consensus 509 ~A~~~~~~~~~--~~~~~~~~ 527 (572)
+...++-+.-+ .|...+..
T Consensus 329 DvqavLakYDdislPkSA~ic 349 (556)
T KOG3807|consen 329 DVQAVLAKYDDISLPKSAAIC 349 (556)
T ss_pred HHHHHHHhhccccCcchHHHH
No 462
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=38.07 E-value=62 Score=31.38 Aligned_cols=101 Identities=11% Similarity=-0.001 Sum_probs=54.4
Q ss_pred HHhcccccHHHHHHHHHHHHHhcCCCchh-HHHHHHHHhhhcCChHHHHHHHHHc-CCCCC-HhHHHHHHHHHHhcCChH
Q 046221 361 TASGELAALEICLQLHGIAFEAGFPRYRS-VQNCLISSYSKCGNVDLAYIVFEEM-GFLRD-VVSWNTIIYGYGVNGHGE 437 (572)
Q Consensus 361 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~ 437 (572)
......++++.|..++.++++. .|+.. .|..-..++.+.+++..|+.-+..+ ...|+ ...|-.-..++...+.+.
T Consensus 12 n~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHH
Confidence 3445556677777777766654 34333 2333335666777777776655555 33333 222222233444445566
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 046221 438 TALALYHKMTETGEVPDSSTYLSILNAC 465 (572)
Q Consensus 438 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 465 (572)
+|...|+.... +.|+..-....+.-|
T Consensus 90 ~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 90 KALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 66666666655 567665555555544
No 463
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=38.07 E-value=2.7e+02 Score=24.24 Aligned_cols=91 Identities=18% Similarity=0.123 Sum_probs=47.0
Q ss_pred HHHHH-HHhhhcCChHHHHHHHHHcCCCC---CHhHHH--HHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHH-
Q 046221 391 QNCLI-SSYSKCGNVDLAYIVFEEMGFLR---DVVSWN--TIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILN- 463 (572)
Q Consensus 391 ~~~l~-~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~- 463 (572)
+|.|+ +.+...|-.+.|..+-.+.++.| |..+++ .-|......|+.+.|++....+...-+.-|...+..|..
T Consensus 29 ~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~F~Lq~q 108 (228)
T KOG2659|consen 29 LNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELFFHLQQL 108 (228)
T ss_pred HHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhHHHHHHHH
Confidence 34444 43444444444444334445544 333332 345666778888888887776654333334323322222
Q ss_pred ---HHhccCChHHHHHHHHHh
Q 046221 464 ---ACGHAGLTNDGLVIFNQM 481 (572)
Q Consensus 464 ---~~~~~g~~~~a~~~~~~~ 481 (572)
-..+.|..++|+++.+.=
T Consensus 109 ~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 109 HLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred HHHHHHHhhhHHHHHHHHHHH
Confidence 135667777777776643
No 464
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.99 E-value=3.3e+02 Score=25.17 Aligned_cols=97 Identities=9% Similarity=-0.006 Sum_probs=57.9
Q ss_pred HHHHHHHhccCChHHHHHHHHHhHHhcCCCC-----ChhHHHHHHHHHHhhCChhHHHHHHHhccC---CCChHHHHHHH
Q 046221 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKP-----SQEHYGCVVDLLARAGCLSDASGLAGKLLE---GMGPNIWRALL 530 (572)
Q Consensus 459 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~l~ 530 (572)
..|...|-+.++|..|.+.+..+-.+.|.+. -..++-.+.+.|.+.++..+|..+..+..- ...........
T Consensus 107 l~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~Lqie~ 186 (399)
T KOG1497|consen 107 LHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQLQIEY 186 (399)
T ss_pred HHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHHHHHH
Confidence 3455667788888888887765532222211 122556667888888888888888887543 12222233333
Q ss_pred HHHhh----hcCCHHHHHHHHHHHHhCCC
Q 046221 531 SGCVL----HVGRFQDAEALRSGSQKKGI 555 (572)
Q Consensus 531 ~~~~~----~~g~~~~A~~~~~~m~~~~~ 555 (572)
..|.. ..+++-+|.+-+.++....+
T Consensus 187 kvc~ARvlD~krkFlEAAqrYyels~~ki 215 (399)
T KOG1497|consen 187 KVCYARVLDYKRKFLEAAQRYYELSQRKI 215 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33321 24777787777777766555
No 465
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=37.95 E-value=3.3e+02 Score=25.09 Aligned_cols=43 Identities=12% Similarity=0.047 Sum_probs=25.0
Q ss_pred HHHHHHHhCCCCCCccchHHHHHHhcccCChHHHHHHHHHHHH
Q 046221 237 KIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279 (572)
Q Consensus 237 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 279 (572)
++++.+...++.|.-++|.-+.-.+.+.=.+..+..+|+.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 4555555556666666665555555555556666666665543
No 466
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=37.52 E-value=1.2e+02 Score=24.34 Aligned_cols=62 Identities=11% Similarity=-0.082 Sum_probs=39.3
Q ss_pred HHHHhccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHcCCC
Q 046221 24 AENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQ 85 (572)
Q Consensus 24 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 85 (572)
+...+.+-.-+-+..-..++..+...+..-.|.++++.+.+.+...+..|.-..|..+...|
T Consensus 8 ~~~~lk~~glr~T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 34444433323344556777888888777899999999998776666655555555554444
No 467
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=37.46 E-value=3.5e+02 Score=25.30 Aligned_cols=118 Identities=15% Similarity=0.199 Sum_probs=56.9
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc--CCCCCHhHHHHHHHHHHh---cCChHHHHHHHHHHH
Q 046221 373 LQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM--GFLRDVVSWNTIIYGYGV---NGHGETALALYHKMT 447 (572)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~ 447 (572)
..+++++.+.+ +.+....-.++..+.+..+.++..+-++++ ..+-+...|...+..... .-.++....+|.+..
T Consensus 51 lsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 51 LSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 34444444442 344444455555555555555555555555 222234455555444332 122344444443332
Q ss_pred hc------CC------CCC--HH---HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCh
Q 046221 448 ET------GE------VPD--SS---TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQ 491 (572)
Q Consensus 448 ~~------g~------~p~--~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 491 (572)
+. |. .|+ .. .+..+..-+...|..+.|..+++.+++-+-+.|..
T Consensus 130 ~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~~ 190 (321)
T PF08424_consen 130 RALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPES 190 (321)
T ss_pred HHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCccc
Confidence 21 11 011 11 12222333467788888888888888766555554
No 468
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=37.11 E-value=3.5e+02 Score=25.14 Aligned_cols=108 Identities=15% Similarity=0.011 Sum_probs=55.7
Q ss_pred hHHHHHHHHHc--C-C----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHH
Q 046221 404 VDLAYIVFEEM--G-F----LRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLV 476 (572)
Q Consensus 404 ~~~A~~~~~~~--~-~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 476 (572)
.+.|.+.|+.. + . ..++.....++....+.|+.+.-..+++.... .++..-...++.+.+...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 45556666655 2 1 23455555566666667665554445444443 3456666777777777777777777
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhhCCh--hHHHHHHHh
Q 046221 477 IFNQMIEENKVKPSQEHYGCVVDLLARAGCL--SDASGLAGK 516 (572)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~ 516 (572)
+++..+....+++.. ... ++..+...+.. +.+.+++..
T Consensus 223 ~l~~~l~~~~v~~~d-~~~-~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQD-IRY-VLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHHHHCTSTS-TTT-HHH-HHHHHH-CSTTCHHHHHHHHHH
T ss_pred HHHHHcCCcccccHH-HHH-HHHHHhcCChhhHHHHHHHHHH
Confidence 787776422243333 333 33333323333 666666554
No 469
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=36.61 E-value=2e+02 Score=22.28 Aligned_cols=60 Identities=12% Similarity=0.142 Sum_probs=43.1
Q ss_pred chhHHHHHHHHhhhcCChHHHHHHHHHcCCCCCHhHHH-HHHHHHHhcCChHHHHHHHHHH
Q 046221 387 YRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWN-TIIYGYGVNGHGETALALYHKM 446 (572)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~ 446 (572)
-..+-.++..++.-.|..++|.++++..+-.++-...| .++..|.+..+.++..++-++.
T Consensus 65 kLscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~ 125 (127)
T PF04034_consen 65 KLSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNEY 125 (127)
T ss_pred cccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34455677778888899999999998885555555554 4788888888877776665543
No 470
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=36.60 E-value=3.4e+02 Score=24.84 Aligned_cols=58 Identities=16% Similarity=0.109 Sum_probs=42.5
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhc
Q 046221 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL 517 (572)
Q Consensus 458 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 517 (572)
+......|...|.+.+|.++.+..+.-+ +.+...+-.|+..+...||--.|..-++++
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld--pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD--PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC--hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 4445567888899999999888887544 556667778888888888866666555554
No 471
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.42 E-value=4.7e+02 Score=26.53 Aligned_cols=201 Identities=13% Similarity=0.024 Sum_probs=94.7
Q ss_pred HHcCChHHHHHHHHHHHhcCC-------CCCCHh---HHHHHHHHhcccccHHHHHHHHHHHH---Hh----cCCC----
Q 046221 328 VQNGCAREALNQFIKMRQEKT-------DSVDSI---TLVSILTASGELAALEICLQLHGIAF---EA----GFPR---- 386 (572)
Q Consensus 328 ~~~~~~~~a~~~~~~~~~~~~-------~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~---~~----~~~~---- 386 (572)
.....++++...|.-...... ...++. +...+...+..+|+.+.+..+.++.. +. .+.|
T Consensus 249 ~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~ 328 (665)
T KOG2422|consen 249 EHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGN 328 (665)
T ss_pred ecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccc
Confidence 345567778777776642211 111222 33444456667777777777655432 11 1111
Q ss_pred ---------chhHHHH---HHHHhhhcCChHHHHHHHHHc-CCCC--CHhHHHHHHHHHH-hcCChHHHHHHHHHHHhcC
Q 046221 387 ---------YRSVQNC---LISSYSKCGNVDLAYIVFEEM-GFLR--DVVSWNTIIYGYG-VNGHGETALALYHKMTETG 450 (572)
Q Consensus 387 ---------~~~~~~~---l~~~~~~~g~~~~A~~~~~~~-~~~~--~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~g 450 (572)
+...|-+ .+..+.+.|-+..|.++.+-+ ...| |+.....+|..|+ +..+++-.+++++.....+
T Consensus 329 cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n 408 (665)
T KOG2422|consen 329 CRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMN 408 (665)
T ss_pred ccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhc
Confidence 1112222 234455667777777776665 3333 3444445566553 4556666666666654322
Q ss_pred ---CCCCHHHHHHHHHHHhccCC---hHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhcc----CC
Q 046221 451 ---EVPDSSTYLSILNACGHAGL---TNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL----EG 520 (572)
Q Consensus 451 ---~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~ 520 (572)
.-||..--..|...|.+... -..|...+.++++.+ |. ...-|++.+ .--+.|.----++. +.
T Consensus 409 ~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~---P~--vl~eLld~~---~l~~da~~~~~k~~~~~a~~ 480 (665)
T KOG2422|consen 409 KLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHH---PL--VLSELLDEL---LLGDDALTKDLKFDGSSAEN 480 (665)
T ss_pred cHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhC---cH--HHHHHHHhc---cCCchhhhhhhccccccccc
Confidence 23443322334444444333 334555555555322 22 233333322 11122222111221 14
Q ss_pred CChHHHHHHHHHHhhh
Q 046221 521 MGPNIWRALLSGCVLH 536 (572)
Q Consensus 521 ~~~~~~~~l~~~~~~~ 536 (572)
+...++..++..|..+
T Consensus 481 ~e~pal~~lv~lY~~r 496 (665)
T KOG2422|consen 481 SELPALMLLVKLYANR 496 (665)
T ss_pred ccchHHHHHHHHHHhh
Confidence 5555777777777643
No 472
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=36.36 E-value=5.4e+02 Score=27.12 Aligned_cols=309 Identities=13% Similarity=0.069 Sum_probs=136.4
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCccchH----HHHHHhcccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcC
Q 046221 225 LFVDFEYAGDALKIFREMRKSRIICDTVALL----NLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCG 300 (572)
Q Consensus 225 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 300 (572)
+....|+..++.+++.-.....- +....|. ...-++...+......+.+...++..-.+....-..|.-++...|
T Consensus 366 GvIH~G~~~~~~~ll~pYLP~~~-~~~s~y~EGGalyAlGLIhA~hG~~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mG 444 (929)
T KOG2062|consen 366 GVIHRGHENQAMKLLAPYLPKEA-GEGSGYKEGGALYALGLIHANHGRGITDYLLQQLKTAENEVVRHGACLGLGLAGMG 444 (929)
T ss_pred ceeeccccchHHHHhhhhCCccC-CCCCCccccchhhhhhccccCcCccHHHHHHHHHHhccchhhhhhhhhhccchhcc
Confidence 44567888888888877654411 1122332 222233444555556666666655543222222233333333333
Q ss_pred ChhHHHHHHhccC---CCCc-chH--HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHH--HHhcccccHHHH
Q 046221 301 DLDSSRSVFNQIT---EKSL-VSW--TAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSIL--TASGELAALEIC 372 (572)
Q Consensus 301 ~~~~a~~~~~~~~---~~~~-~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll--~~~~~~~~~~~a 372 (572)
.- -.++|+.+. ..|. ++- ..+..+++..|... .+.+++|..-.+..-...+...+. -++..-|.-+.|
T Consensus 445 Sa--~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~--~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~A 520 (929)
T KOG2062|consen 445 SA--NEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTAN--QEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDA 520 (929)
T ss_pred cc--cHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCc--HHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhh
Confidence 22 223333332 2221 111 11223333333221 122333321111111111111111 122333444455
Q ss_pred HHHHHHHHHhcCCCchh--HHHHHHHHhhhcCChHHHHHHHHHc--CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 046221 373 LQLHGIAFEAGFPRYRS--VQNCLISSYSKCGNVDLAYIVFEEM--GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTE 448 (572)
Q Consensus 373 ~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 448 (572)
..+..++.... .|-.. -.-++..+|+-.|+.....+++.-. ...-|+.-+....-++.-.++++....+.+-+.+
T Consensus 521 d~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~~s~V~lLse 599 (929)
T KOG2062|consen 521 DPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSE 599 (929)
T ss_pred HHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccccchHHHHHHHHHheeeEecChhhchHHHHHHhh
Confidence 55555555432 11111 0112445566666666666655554 3333444455555566666777777777665555
Q ss_pred cCCCCCHH--HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhC-ChhHHHHHHHhccC-CCChH
Q 046221 449 TGEVPDSS--TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAG-CLSDASGLAGKLLE-GMGPN 524 (572)
Q Consensus 449 ~g~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~-~~~~~ 524 (572)
+ ..|-.. +-..|.-+|+..| ..+|+.+++-|+. |... |.|+| .+..|+=+.+.-.. .|...
T Consensus 600 s-~N~HVRyGaA~ALGIaCAGtG-~~eAi~lLepl~~------D~~~-------fVRQgAlIa~amIm~Q~t~~~~pkv~ 664 (929)
T KOG2062|consen 600 S-YNPHVRYGAAMALGIACAGTG-LKEAINLLEPLTS------DPVD-------FVRQGALIALAMIMIQQTEQLCPKVN 664 (929)
T ss_pred h-cChhhhhhHHHHHhhhhcCCC-cHHHHHHHhhhhc------ChHH-------HHHHHHHHHHHHHHHhcccccCchHH
Confidence 3 444332 2223344455555 4467777777753 1111 12222 12222323332222 45544
Q ss_pred HHHHHHHHHhhhcCCHHHHHHHHHHHHhCCCC
Q 046221 525 IWRALLSGCVLHVGRFQDAEALRSGSQKKGII 556 (572)
Q Consensus 525 ~~~~l~~~~~~~~g~~~~A~~~~~~m~~~~~~ 556 (572)
.++..+...- ..+.++...-|-....+|+-
T Consensus 665 ~frk~l~kvI--~dKhEd~~aK~GAilAqGil 694 (929)
T KOG2062|consen 665 GFRKQLEKVI--NDKHEDGMAKFGAILAQGIL 694 (929)
T ss_pred HHHHHHHHHh--hhhhhHHHHHHHHHHHhhhh
Confidence 4444333321 25677777777777777764
No 473
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=35.80 E-value=3.5e+02 Score=24.90 Aligned_cols=70 Identities=7% Similarity=-0.019 Sum_probs=38.8
Q ss_pred HHHHHHHHHhcCCCChhHHhHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHH----------ccCCHHHHHHHH
Q 046221 170 ELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFV----------DFEYAGDALKIF 239 (572)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~----------~~~~~~~a~~~~ 239 (572)
.++++.+.+.++.|.-..+.=+.-.+.+.=.+.+.+.+|+.+..... -|..|+..|+ -.|++....+++
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~-rfd~Ll~iCcsmlil~Re~il~~DF~~nmkLL 341 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQ-RFDFLLYICCSMLILVRERILEGDFTVNMKLL 341 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChh-hhHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 45566666666666666655555555555566666666666654211 1444444333 246666666655
Q ss_pred H
Q 046221 240 R 240 (572)
Q Consensus 240 ~ 240 (572)
+
T Consensus 342 Q 342 (370)
T KOG4567|consen 342 Q 342 (370)
T ss_pred h
Confidence 4
No 474
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=35.38 E-value=3.2e+02 Score=24.23 Aligned_cols=54 Identities=9% Similarity=0.035 Sum_probs=32.3
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHH
Q 046221 428 YGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNACGHAGLTNDGLVIFNQMIE 483 (572)
Q Consensus 428 ~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 483 (572)
.++...|++-++++.-.+.+.. .| +...|..-..+.+..=+.++|..-|..+++
T Consensus 238 QC~L~~~e~yevleh~seiL~~--~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 238 QCLLKKEEYYEVLEHCSEILRH--HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHhhHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 3444556666666666666663 33 445666666666666666666666666653
No 475
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=35.29 E-value=95 Score=23.45 Aligned_cols=45 Identities=16% Similarity=0.151 Sum_probs=29.2
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC
Q 046221 120 AIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164 (572)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 164 (572)
.++..+...+..-.|.++++.+.+.+..++..|..-.|+.+...|
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 345555555666677788888877776667666666666665555
No 476
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.16 E-value=48 Score=30.56 Aligned_cols=90 Identities=13% Similarity=-0.027 Sum_probs=63.0
Q ss_pred hhcCChHHHHHHHHHc-CCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHhccCChHHHH
Q 046221 399 SKCGNVDLAYIVFEEM-GFLR-DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS-STYLSILNACGHAGLTNDGL 475 (572)
Q Consensus 399 ~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~ 475 (572)
...|.++.|++.|... ...| ....|..-.+++.+.++...|++-+....+ +.||. ..|-.-..+..-.|++++|.
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHHHH
Confidence 3467788888888776 3333 455566666778888888888888888877 67776 55655566667788888888
Q ss_pred HHHHHhHHhcCCCCCh
Q 046221 476 VIFNQMIEENKVKPSQ 491 (572)
Q Consensus 476 ~~~~~~~~~~~~~~~~ 491 (572)
..+..+. +.++.+..
T Consensus 203 ~dl~~a~-kld~dE~~ 217 (377)
T KOG1308|consen 203 HDLALAC-KLDYDEAN 217 (377)
T ss_pred HHHHHHH-hccccHHH
Confidence 8888885 44444443
No 477
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=35.08 E-value=3.3e+02 Score=26.35 Aligned_cols=84 Identities=14% Similarity=0.143 Sum_probs=58.3
Q ss_pred CCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHHHH--------HHhCCCHHHHHHHHhhcCC--
Q 046221 144 SGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDM--------YSCLMDLDAAIQIFREMEC-- 213 (572)
Q Consensus 144 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~a~~~~~~~~~-- 213 (572)
..+.||.++.+.+...++..-..+-...+|+...+++ .|-...+-+|+-. -.+...-++++++++.|+.
T Consensus 177 kkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L 255 (669)
T KOG3636|consen 177 KKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQL 255 (669)
T ss_pred cccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhc
Confidence 4588999999888888887778888888898888876 3333333333221 1244567889999998876
Q ss_pred --CCcccHHHHHHHHHc
Q 046221 214 --KDVISWTRMMGLFVD 228 (572)
Q Consensus 214 --~~~~~~~~li~~~~~ 228 (572)
.|+.-+-.|...|+.
T Consensus 256 ~~eDvpDffsLAqyY~~ 272 (669)
T KOG3636|consen 256 SVEDVPDFFSLAQYYSD 272 (669)
T ss_pred ccccchhHHHHHHHHhh
Confidence 466667777766653
No 478
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=34.87 E-value=1.9e+02 Score=26.53 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=14.7
Q ss_pred CCCHHHHHHHHHHHhccCChHHHH
Q 046221 452 VPDSSTYLSILNACGHAGLTNDGL 475 (572)
Q Consensus 452 ~p~~~~~~~l~~~~~~~g~~~~a~ 475 (572)
.-|+..|..+..||.-.|+...+.
T Consensus 194 ~Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 194 DFDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred hCCHHHHHHHHHHHHHHhhhHHHH
Confidence 346666667777776666555444
No 479
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=34.24 E-value=6.9e+02 Score=27.76 Aligned_cols=112 Identities=15% Similarity=0.069 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHhcC--ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 046221 421 VSWNTIIYGYGVNG--HGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVV 498 (572)
Q Consensus 421 ~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 498 (572)
.....++-+|.+.+ +++.|+.+..++++. +...-...+.-.+- +-++-++|+.++... |.. -+++
T Consensus 813 ~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~----~~~~ae~alkyl~f---LvDvn~Ly~~ALG~Y----Dl~--Lal~ 879 (928)
T PF04762_consen 813 KYLQPILTAYVKKSPPDLEEALQLIKELREE----DPESAEEALKYLCF---LVDVNKLYDVALGTY----DLE--LALM 879 (928)
T ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHHHHhc----ChHHHHHHHhHhee---eccHHHHHHHHhhhc----CHH--HHHH
Confidence 34455667777776 677777777777764 11111111111110 112333444333211 111 1223
Q ss_pred HHHHhhCChhHHHHHHHhccC-CCChHHHHHHHHHHhhhcCCHHHHHHHHHHH
Q 046221 499 DLLARAGCLSDASGLAGKLLE-GMGPNIWRALLSGCVLHVGRFQDAEALRSGS 550 (572)
Q Consensus 499 ~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~g~~~~A~~~~~~m 550 (572)
-|-..+.|+.|=+-+++++.. ++.. -...+.. +.++++.|++.+.++
T Consensus 880 VAq~SQkDPKEYLPfL~~L~~l~~~~--rry~ID~---hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 880 VAQQSQKDPKEYLPFLQELQKLPPLY--RRYKIDD---HLKRYEKALRHLSAC 927 (928)
T ss_pred HHHHhccChHHHHHHHHHHHhCChhh--eeeeHhh---hhCCHHHHHHHHHhh
Confidence 333345566666666666654 2211 1112222 258999999887654
No 480
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=34.15 E-value=3.7e+02 Score=24.66 Aligned_cols=50 Identities=14% Similarity=0.163 Sum_probs=25.5
Q ss_pred HHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHHHHcCChHHHHHHHHHHH
Q 046221 293 IAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344 (572)
Q Consensus 293 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 344 (572)
+..+.+.++.......+..+. .+..-...+..+...|++..|++++.+..
T Consensus 105 l~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~ 154 (291)
T PF10475_consen 105 LRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQ 154 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 334444444444444444332 22233344555666777777777776665
No 481
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=33.87 E-value=78 Score=23.95 Aligned_cols=48 Identities=8% Similarity=-0.032 Sum_probs=33.5
Q ss_pred HHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHcCCCChH
Q 046221 41 IVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLE 88 (572)
Q Consensus 41 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 88 (572)
.++..+...+..-.|.++++.+.+.+...+..|.-..|..+...|-+.
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 456666666777788889999888876667776666666666555443
No 482
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=33.56 E-value=4e+02 Score=24.80 Aligned_cols=92 Identities=14% Similarity=0.139 Sum_probs=57.6
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHc-------CCCCCHhHHHHHHHH-HHhcCChHHHHHHHHHHHhcCCCCCH----HH
Q 046221 390 VQNCLISSYSKCGNVDLAYIVFEEM-------GFLRDVVSWNTIIYG-YGVNGHGETALALYHKMTETGEVPDS----ST 457 (572)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~g~~p~~----~~ 457 (572)
........||+.|+.+.|++.+.+. |.+.|+..+.+-+.. |....-..+-++..+.+.+.|-.-+. .+
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKv 185 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKV 185 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHH
Confidence 3445667888999999998888765 666776665554433 33333345556666667777655433 34
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhHH
Q 046221 458 YLSILNACGHAGLTNDGLVIFNQMIE 483 (572)
Q Consensus 458 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 483 (572)
|..+- |....++.+|..+|-+.+.
T Consensus 186 Y~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 186 YQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 44332 3455678888888877653
No 483
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.27 E-value=5.6e+02 Score=27.66 Aligned_cols=132 Identities=14% Similarity=0.140 Sum_probs=86.7
Q ss_pred HHHHhcCChhHHHHHHhccCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHH
Q 046221 294 AMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICL 373 (572)
Q Consensus 294 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 373 (572)
.....+|+++.|.+.-..+.++ .+|..|.......|+.+-|+..|++.+ .|..+--.|.-.|+.++..
T Consensus 651 ~LaLe~gnle~ale~akkldd~--d~w~rLge~Al~qgn~~IaEm~yQ~~k----------nfekLsfLYliTgn~eKL~ 718 (1202)
T KOG0292|consen 651 ELALECGNLEVALEAAKKLDDK--DVWERLGEEALRQGNHQIAEMCYQRTK----------NFEKLSFLYLITGNLEKLS 718 (1202)
T ss_pred eeehhcCCHHHHHHHHHhcCcH--HHHHHHHHHHHHhcchHHHHHHHHHhh----------hhhheeEEEEEeCCHHHHH
Confidence 3456678888888877766544 489999999999999999999988875 2333334456677777776
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 046221 374 QLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET 449 (572)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 449 (572)
++.+....++ |.. .....-.-.|++++-.+++...|..|-. |- .-..+|.-++|.++.++....
T Consensus 719 Km~~iae~r~---D~~---~~~qnalYl~dv~ervkIl~n~g~~~la--yl----ta~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 719 KMMKIAEIRN---DAT---GQFQNALYLGDVKERVKILENGGQLPLA--YL----TAAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred HHHHHHHhhh---hhH---HHHHHHHHhccHHHHHHHHHhcCcccHH--HH----HHhhcCcHHHHHHHHHhhccc
Confidence 6665554332 111 1122223468899989999888664432 21 113467778888888887663
No 484
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=32.82 E-value=7.2e+02 Score=27.54 Aligned_cols=248 Identities=12% Similarity=0.031 Sum_probs=128.1
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHH
Q 046221 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTA 362 (572)
Q Consensus 283 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~ 362 (572)
.+++.+-...+..+.+.+..+....+...+.+++...-...+.++.+.+........+..+. . .+|...-...+.+
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L-~---~~d~~VR~~A~~a 707 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHL-G---SPDPVVRAAALDV 707 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHh-c---CCCHHHHHHHHHH
Confidence 44555555555666665554433334444444444333333334333321111112222222 1 1444444444554
Q ss_pred hcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHH-HHH
Q 046221 363 SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGET-ALA 441 (572)
Q Consensus 363 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~ 441 (572)
+...+..+ ...+.. .. -.++...-...+.++.+.+..+. +...... ++...-...+.++...+..+. +..
T Consensus 708 L~~~~~~~-~~~l~~-~L---~D~d~~VR~~Av~aL~~~~~~~~---l~~~l~D-~~~~VR~~aa~aL~~~~~~~~~~~~ 778 (897)
T PRK13800 708 LRALRAGD-AALFAA-AL---GDPDHRVRIEAVRALVSVDDVES---VAGAATD-ENREVRIAVAKGLATLGAGGAPAGD 778 (897)
T ss_pred HHhhccCC-HHHHHH-Hh---cCCCHHHHHHHHHHHhcccCcHH---HHHHhcC-CCHHHHHHHHHHHHHhccccchhHH
Confidence 44332111 111111 11 13444444555566655544332 2222222 555565666667766665432 345
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccCCC
Q 046221 442 LYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGM 521 (572)
Q Consensus 442 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 521 (572)
.+..+.+ .+|...-...+.++...|..+.+...+..+++ .++..+-...+.++.+.+. +++...+-.+..++
T Consensus 779 ~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~----d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~D~ 850 (897)
T PRK13800 779 AVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR----ASAWQVRQGAARALAGAAA-DVAVPALVEALTDP 850 (897)
T ss_pred HHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc----CCChHHHHHHHHHHHhccc-cchHHHHHHHhcCC
Confidence 5555554 46777788888888888887666555655653 3465566667778877775 45667777777788
Q ss_pred ChHHHHHHHHHHhhhcCCHHHHHHHHHHHHh
Q 046221 522 GPNIWRALLSGCVLHVGRFQDAEALRSGSQK 552 (572)
Q Consensus 522 ~~~~~~~l~~~~~~~~g~~~~A~~~~~~m~~ 552 (572)
+..+-...+.++... +....+...+....+
T Consensus 851 ~~~VR~~A~~aL~~~-~~~~~a~~~L~~al~ 880 (897)
T PRK13800 851 HLDVRKAAVLALTRW-PGDPAARDALTTALT 880 (897)
T ss_pred CHHHHHHHHHHHhcc-CCCHHHHHHHHHHHh
Confidence 877766667666543 223456666655543
No 485
>PLN03025 replication factor C subunit; Provisional
Probab=32.16 E-value=4.2e+02 Score=24.68 Aligned_cols=84 Identities=19% Similarity=0.187 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHH---------------hccCCCChHHHHHHHHHHh
Q 046221 470 LTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAG---------------KLLEGMGPNIWRALLSGCV 534 (572)
Q Consensus 470 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~---------------~~~~~~~~~~~~~l~~~~~ 534 (572)
..++....++...+..|+..+......++.... |+...|...++ ++...+.+.....++..+
T Consensus 159 ~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~--gDlR~aln~Lq~~~~~~~~i~~~~v~~~~~~~~~~~i~~~i~~~- 235 (319)
T PLN03025 159 SDQEILGRLMKVVEAEKVPYVPEGLEAIIFTAD--GDMRQALNNLQATHSGFGFVNQENVFKVCDQPHPLHVKNIVRNC- 235 (319)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC--CCHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCHHHHHHHHHHH-
Q ss_pred hhcCCHHHHHHHHHHHHhCCCCC
Q 046221 535 LHVGRFQDAEALRSGSQKKGIIK 557 (572)
Q Consensus 535 ~~~g~~~~A~~~~~~m~~~~~~~ 557 (572)
.. ++.++|...+.+|.+.|+.+
T Consensus 236 ~~-~~~~~a~~~l~~ll~~g~~~ 257 (319)
T PLN03025 236 LK-GKFDDACDGLKQLYDLGYSP 257 (319)
T ss_pred Hc-CCHHHHHHHHHHHHHcCCCH
No 486
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.57 E-value=4.3e+02 Score=26.41 Aligned_cols=83 Identities=8% Similarity=0.020 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC----------------CCChHHHHHHHHHHhh
Q 046221 472 NDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE----------------GMGPNIWRALLSGCVL 535 (572)
Q Consensus 472 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------~~~~~~~~~l~~~~~~ 535 (572)
++..+.++...+..|+..+......++.. ..|+...|+.+++++.. -.+...+..++..+..
T Consensus 183 ~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~--S~Gd~RdAL~lLeq~i~~~~~~it~~~V~~~lg~~~~~~~~~l~~si~~ 260 (484)
T PRK14956 183 SVLQDYSEKLCKIENVQYDQEGLFWIAKK--GDGSVRDMLSFMEQAIVFTDSKLTGVKIRKMIGYHGIEFLTSFIKSLID 260 (484)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCChHHHHHHHHHHHHHhCCCCcCHHHHHHHhCCCCHHHHHHHHHHHHc
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC
Q 046221 536 HVGRFQDAEALRSGSQKKGIIK 557 (572)
Q Consensus 536 ~~g~~~~A~~~~~~m~~~~~~~ 557 (572)
. +....|+.++.+|.+.|..+
T Consensus 261 ~-d~~~~al~~l~~l~~~G~d~ 281 (484)
T PRK14956 261 P-DNHSKSLEILESLYQEGQDI 281 (484)
T ss_pred C-CcHHHHHHHHHHHHHcCCCH
No 487
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=31.01 E-value=2.1e+02 Score=25.50 Aligned_cols=58 Identities=16% Similarity=0.087 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhhCChhHHHHHHHhccC--------CCChHHHHHHHHHHhhhcCCHHHHHHHHHHHH
Q 046221 493 HYGCVVDLLARAGCLSDASGLAGKLLE--------GMGPNIWRALLSGCVLHVGRFQDAEALRSGSQ 551 (572)
Q Consensus 493 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~l~~~~~~~~g~~~~A~~~~~~m~ 551 (572)
....+..-|.+.|++++|.++|+.+.. .+...+...++. |....|+.++.+.+.=+|.
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~-Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLE-CAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH-HHHHhCCHHHHHHHHHHHh
Confidence 445677889999999999999999854 111112222333 3344588888877765554
No 488
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.97 E-value=4.4e+02 Score=26.62 Aligned_cols=84 Identities=17% Similarity=0.175 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC---------------CCChHHHHHHHHHHh
Q 046221 470 LTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE---------------GMGPNIWRALLSGCV 534 (572)
Q Consensus 470 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------------~~~~~~~~~l~~~~~ 534 (572)
..++....+....+..|+..+......++.... |+...|...++++.. .+.......++.++
T Consensus 176 s~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~--GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al- 252 (504)
T PRK14963 176 TEEEIAGKLRRLLEAEGREAEPEALQLVARLAD--GAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAAL- 252 (504)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC--CCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHH-
Q ss_pred hhcCCHHHHHHHHHHHHhCCCCC
Q 046221 535 LHVGRFQDAEALRSGSQKKGIIK 557 (572)
Q Consensus 535 ~~~g~~~~A~~~~~~m~~~~~~~ 557 (572)
.. ++.++|+.+++.|...|..+
T Consensus 253 ~~-~d~~~Al~~l~~Ll~~G~~~ 274 (504)
T PRK14963 253 AQ-GDAAEALSGAAQLYRDGFAA 274 (504)
T ss_pred Hc-CCHHHHHHHHHHHHHcCCCH
No 489
>PRK14700 recombination factor protein RarA; Provisional
Probab=30.51 E-value=4.3e+02 Score=24.30 Aligned_cols=45 Identities=13% Similarity=0.079 Sum_probs=30.5
Q ss_pred HHHHHH---hcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCC
Q 046221 426 IIYGYG---VNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGL 470 (572)
Q Consensus 426 l~~~~~---~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 470 (572)
+++++. +..|.+.|+-++-+|++.|-.|....-..++.++-..|.
T Consensus 129 ~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGl 176 (300)
T PRK14700 129 QLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGN 176 (300)
T ss_pred HHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 344543 346777888888888888777777766666666666663
No 490
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.18 E-value=1.3e+02 Score=20.92 Aligned_cols=39 Identities=10% Similarity=0.064 Sum_probs=27.7
Q ss_pred CCChhhHH-HHHHHHhhCCChHHHHHHHHHHHHcCCCCCcc
Q 046221 33 EKNVVSWS-IVIHGYSINGFHEKSMKAFSHMMLSGLLPNSF 72 (572)
Q Consensus 33 ~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 72 (572)
+.+..-|| ++++.+.+..--++|+++++.|.++| ..+..
T Consensus 27 ~~~~~gy~PtV~D~L~rCdT~EEAlEii~yleKrG-Ei~~E 66 (98)
T COG4003 27 KIDFSGYNPTVIDFLRRCDTEEEALEIINYLEKRG-EITPE 66 (98)
T ss_pred cCCcCCCCchHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHH
Confidence 33444454 56677778888899999999999988 44443
No 491
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=30.02 E-value=1.6e+02 Score=21.97 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=10.0
Q ss_pred HHHHHHHcCChHHHHHHHHHH
Q 046221 323 IISGYVQNGCAREALNQFIKM 343 (572)
Q Consensus 323 l~~~~~~~~~~~~a~~~~~~~ 343 (572)
++..|...++.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 344444455555555555544
No 492
>PHA03100 ankyrin repeat protein; Provisional
Probab=29.80 E-value=5.7e+02 Score=25.45 Aligned_cols=40 Identities=15% Similarity=0.116 Sum_probs=19.5
Q ss_pred HHHHHHHhcCCCChhH--HhHHHHHHHhCCCHHHHHHHHhhc
Q 046221 172 IHGLTIKLGLILDVSV--NNSVLDMYSCLMDLDAAIQIFREM 211 (572)
Q Consensus 172 ~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~ 211 (572)
+.+.+++.|..++... -.+.+...+..|+.+-+.-+++.-
T Consensus 158 iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~g 199 (480)
T PHA03100 158 ILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNG 199 (480)
T ss_pred HHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 3444455554443221 123445555666666666555543
No 493
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=29.69 E-value=5e+02 Score=26.39 Aligned_cols=76 Identities=9% Similarity=-0.105 Sum_probs=49.5
Q ss_pred hhHHHHHHHHHHhhCChhHHHHHHHhccCCC---ChHHHHHHHHHHhhhcCCHHHHHHHHHHHHhCCCCCCCceeEEEcC
Q 046221 491 QEHYGCVVDLLARAGCLSDASGLAGKLLEGM---GPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISFLNST 567 (572)
Q Consensus 491 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~l~~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~ 567 (572)
...|.+..-++.+.+++..|.+-|.+....+ -|.+.--++.. .+ |..-.-.+...+|.+.-.+|.|..-...+.
T Consensus 587 f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkgedipdvi~diin~--ie-Ggpp~dVq~Vrem~dhlak~aptilddSLq 663 (1141)
T KOG1811|consen 587 FGAWHAWGLACLKAENLAAAREKFKQAFKLKGEDIPDVIFDIINL--IE-GGPPRDVQDVREMLDHLAKPAPTILDDSLQ 663 (1141)
T ss_pred ccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCccchHHHHHHHh--hc-CCCcchHHHHHHHHHHhccCCccccccccc
Confidence 4478888889999999999999999887622 12222233332 23 555555566667777777777776665555
Q ss_pred Cc
Q 046221 568 SR 569 (572)
Q Consensus 568 ~~ 569 (572)
+.
T Consensus 664 aD 665 (1141)
T KOG1811|consen 664 AD 665 (1141)
T ss_pred ch
Confidence 44
No 494
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=29.32 E-value=2e+02 Score=19.97 Aligned_cols=14 Identities=21% Similarity=0.503 Sum_probs=5.9
Q ss_pred ccCChHHHHHHHHH
Q 046221 467 HAGLTNDGLVIFNQ 480 (572)
Q Consensus 467 ~~g~~~~a~~~~~~ 480 (572)
+.|++++|+.+|.+
T Consensus 18 ~~g~y~eAl~~Y~~ 31 (77)
T cd02683 18 QEGRFQEALVCYQE 31 (77)
T ss_pred HhccHHHHHHHHHH
Confidence 34444444444433
No 495
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=29.21 E-value=1.2e+02 Score=17.29 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=13.7
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHH
Q 046221 526 WRALLSGCVLHVGRFQDAEALRS 548 (572)
Q Consensus 526 ~~~l~~~~~~~~g~~~~A~~~~~ 548 (572)
|..+...+... |++++|..+++
T Consensus 4 ~y~~a~~~y~~-~ky~~A~~~~~ 25 (36)
T PF07720_consen 4 LYGLAYNFYQK-GKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHT-T-HHHHHHHHH
T ss_pred HHHHHHHHHHH-hhHHHHHHHHH
Confidence 44555555555 88888888844
No 496
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=29.19 E-value=8.2e+02 Score=27.09 Aligned_cols=321 Identities=11% Similarity=0.052 Sum_probs=159.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCccchH-------HHHHHhcccCC---hHHHHHHHHHHHHhCCCCCcchHHH
Q 046221 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALL-------NLISVNAILGD---LKRGKQLHAQVVLGGLQSELRLSNS 291 (572)
Q Consensus 222 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-------~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~ 291 (572)
+=+++...+.++.|+..|+++..+ .+--...|. +++.-....|+ +++|..-|+.+... +..+--|-.
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 557 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRES-FPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG--VGAPLEYLG 557 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhc-CCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC--CCCchHHHh
Confidence 336788889999999999998765 222223332 33444444455 45555555554332 222223333
Q ss_pred HHHHHHhcCChhHHHHHHhccCC-----CCc--------------------chHHHHHHHHH---HcCChHHHHHHHHHH
Q 046221 292 IIAMYSKCGDLDSSRSVFNQITE-----KSL--------------------VSWTAIISGYV---QNGCAREALNQFIKM 343 (572)
Q Consensus 292 l~~~~~~~~~~~~a~~~~~~~~~-----~~~--------------------~~~~~l~~~~~---~~~~~~~a~~~~~~~ 343 (572)
-.-.|-+.|++++-++.+.-..+ |-+ .+|.-++-+.. +.-...+-.++|+.+
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (932)
T PRK13184 558 KALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSREEEKFLEIL 637 (932)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34467788888877666554332 111 12222221111 112223344556555
Q ss_pred HhcCC------CCCCHhH-----HHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHH
Q 046221 344 RQEKT------DSVDSIT-----LVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFE 412 (572)
Q Consensus 344 ~~~~~------~~~~~~~-----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 412 (572)
...-. ..+.+.+ +..++.-. .|..---.+++++..+ .++.....-+.-+.+..|.++-+.+..+
T Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (932)
T PRK13184 638 YHKQQATLFCQLDKTPLQFRSSKMELFLSFW--SGFTPFLPELFQRAWD---LRDYRALADIFYVACDLGNWEFFSQFSD 712 (932)
T ss_pred HhhccCCceeeccCchhhhhhhhHHHHHHHH--hcCchhhHHHHHHHhh---cccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 32111 1111111 11111111 1222222233333332 2233444444555678898888777666
Q ss_pred Hc-------CCCCCH--------hHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHhccCChHHHH
Q 046221 413 EM-------GFLRDV--------VSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS--STYLSILNACGHAGLTNDGL 475 (572)
Q Consensus 413 ~~-------~~~~~~--------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~a~ 475 (572)
.+ ..+.+. ..|-.-+.+.....+++++.+.+.. +.|.. ..+..++.-+.-.++.+...
T Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (932)
T PRK13184 713 ILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDN-----TDPTLILYAFDLFAIQALLDEEGESII 787 (932)
T ss_pred HHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhh-----CCHHHHHHHHHHHHHHHHHhccchHHH
Confidence 55 111111 1122224445555556665553332 34433 33444444445556666655
Q ss_pred HHHHHhHHhcCCCCCh--hHHHHHHHHHHhhCChhHHHHHHHhccC--CCChHHHHHHHHHHhhh-cCCHHHHHHHHHHH
Q 046221 476 VIFNQMIEENKVKPSQ--EHYGCVVDLLARAGCLSDASGLAGKLLE--GMGPNIWRALLSGCVLH-VGRFQDAEALRSGS 550 (572)
Q Consensus 476 ~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~-~g~~~~A~~~~~~m 550 (572)
.+.+.+ ++...+... .....-|.+|.-..++++|-+++..... -.+..+....+.+|+.. .++.+.|...|..-
T Consensus 788 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (932)
T PRK13184 788 QLLQLI-YDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYLALTEDREAAKAHFSGC 866 (932)
T ss_pred HHHHHH-HhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHHHHHhcCchhHHHHHHhhc
Confidence 655555 343222221 1233456788889999999999987765 33344555556666543 47777888888776
Q ss_pred HhCCCC
Q 046221 551 QKKGII 556 (572)
Q Consensus 551 ~~~~~~ 556 (572)
++..+-
T Consensus 867 ~~~~~~ 872 (932)
T PRK13184 867 REDALF 872 (932)
T ss_pred cccccC
Confidence 644443
No 497
>PRK07914 hypothetical protein; Reviewed
Probab=29.12 E-value=4.5e+02 Score=24.52 Aligned_cols=20 Identities=15% Similarity=0.076 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHHHHhCCCCC
Q 046221 538 GRFQDAEALRSGSQKKGIIK 557 (572)
Q Consensus 538 g~~~~A~~~~~~m~~~~~~~ 557 (572)
|+..+|..+++.+.+.|..|
T Consensus 209 g~~~~A~~~l~~L~~~ge~p 228 (320)
T PRK07914 209 GDVAGAAEALRWAMMRGEPH 228 (320)
T ss_pred CCHHHHHHHHHHHHHCCCch
Confidence 89999999999999988764
No 498
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=28.95 E-value=95 Score=23.70 Aligned_cols=46 Identities=15% Similarity=0.083 Sum_probs=28.3
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC
Q 046221 119 NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164 (572)
Q Consensus 119 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 164 (572)
..++..+...+..-.|.++++.|.+.+...+..|.--.|..+...|
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 3556666666667777788888887776666666555555554444
No 499
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=28.85 E-value=6.2e+02 Score=25.59 Aligned_cols=55 Identities=16% Similarity=0.199 Sum_probs=32.3
Q ss_pred hHHHHHhhcCChhhHHHHhccCCC--CChhh---HHHHHHHHhhCCChHHHHHHHHHHHH
Q 046221 10 KLLSNYFKSGKIKEAENLFDEIPE--KNVVS---WSIVIHGYSINGFHEKSMKAFSHMML 64 (572)
Q Consensus 10 ~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~ 64 (572)
-|+.-|.+.+++++|..++..|.= ....+ .+.+.+.+.+..--.+....++.+..
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 366778888888888888877652 12223 33444555555545555555555554
No 500
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=28.69 E-value=4.1e+02 Score=23.46 Aligned_cols=157 Identities=11% Similarity=0.031 Sum_probs=0.0
Q ss_pred HHHHhhhcCChHHHHHHHHHc---CCCCCHhHHHHHHHHHHh-cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH---h
Q 046221 394 LISSYSKCGNVDLAYIVFEEM---GFLRDVVSWNTIIYGYGV-NGHGETALALYHKMTETGEVPDSSTYLSILNAC---G 466 (572)
Q Consensus 394 l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~---~ 466 (572)
++...-..|+++++...++++ +...+..--+.|-.+|-. .|....+++++..+....-.-.......++..| .
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~ki 86 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYKKKI 86 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHHHHH
Q ss_pred ccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCCh-----------------hHHHHHHHhccC------CCCh
Q 046221 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCL-----------------SDASGLAGKLLE------GMGP 523 (572)
Q Consensus 467 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-----------------~~A~~~~~~~~~------~~~~ 523 (572)
...-..-...+++-+ +..+-|....-.+.+-.+-..||+ +.|.+.++++.+ +|..
T Consensus 87 e~EL~~~C~eii~lI--d~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~ 164 (236)
T PF00244_consen 87 EDELIDICNEIIRLI--DKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTH 164 (236)
T ss_dssp HHHHHHHHHHHHHHH--HHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHHHHH--HHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCC
Q ss_pred HHHHHHHHHHhhh----cCCHHHHHHHHHHHHh
Q 046221 524 NIWRALLSGCVLH----VGRFQDAEALRSGSQK 552 (572)
Q Consensus 524 ~~~~~l~~~~~~~----~g~~~~A~~~~~~m~~ 552 (572)
+++-.|+-.+... .|+.++|.++.++..+
T Consensus 165 p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 165 PLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Done!