Query 046221
Match_columns 572
No_of_seqs 655 out of 2864
Neff 11.8
Searched_HMMs 29240
Date Mon Mar 25 17:16:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046221.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046221hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 8.6E-41 2.9E-45 341.6 34.0 484 14-519 62-578 (597)
2 2xpi_A Anaphase-promoting comp 100.0 5.7E-40 2E-44 335.5 36.5 490 1-501 80-594 (597)
3 4g26_A Pentatricopeptide repea 100.0 6.9E-29 2.4E-33 242.0 19.5 191 38-263 28-222 (501)
4 4g26_A Pentatricopeptide repea 100.0 1.9E-28 6.5E-33 238.9 22.3 185 318-504 27-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 8.6E-26 2.9E-30 217.3 39.5 370 121-533 5-383 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 9.4E-26 3.2E-30 217.0 39.5 347 114-505 32-387 (388)
7 2gw1_A Mitochondrial precursor 99.9 1.5E-23 5E-28 210.0 32.1 399 116-524 7-483 (514)
8 2gw1_A Mitochondrial precursor 99.9 1.6E-22 5.4E-27 202.4 39.1 430 36-485 6-479 (514)
9 3fp2_A TPR repeat-containing p 99.9 8.9E-22 3E-26 198.1 31.2 426 116-555 26-493 (537)
10 3fp2_A TPR repeat-containing p 99.9 1.4E-21 4.7E-26 196.7 32.3 424 35-483 24-490 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 4.1E-21 1.4E-25 188.6 33.6 310 182-519 23-357 (450)
12 2y4t_A DNAJ homolog subfamily 99.9 5.6E-21 1.9E-25 187.7 34.2 319 113-462 24-370 (450)
13 3ieg_A DNAJ homolog subfamily 99.8 6.2E-18 2.1E-22 160.4 32.6 305 219-532 6-349 (359)
14 3hym_B Cell division cycle pro 99.8 1.4E-17 4.6E-22 156.1 33.7 283 253-541 24-322 (330)
15 3ieg_A DNAJ homolog subfamily 99.8 1.2E-17 4.1E-22 158.4 32.5 295 252-555 4-337 (359)
16 1xi4_A Clathrin heavy chain; a 99.8 1.8E-15 6.2E-20 156.6 47.0 369 9-440 989-1375(1630)
17 1xi4_A Clathrin heavy chain; a 99.8 5.5E-15 1.9E-19 153.1 50.5 408 70-536 984-1414(1630)
18 1b89_A Protein (clathrin heavy 99.8 9.6E-19 3.3E-23 162.2 20.9 382 83-518 15-415 (449)
19 1b89_A Protein (clathrin heavy 99.8 5E-18 1.7E-22 157.5 25.2 401 16-476 14-425 (449)
20 1fch_A Peroxisomal targeting s 99.8 2.8E-17 9.5E-22 156.6 26.5 258 256-516 69-355 (368)
21 2ooe_A Cleavage stimulation fa 99.8 3.2E-16 1.1E-20 156.7 35.2 406 114-555 12-494 (530)
22 3hym_B Cell division cycle pro 99.8 1.6E-16 5.5E-21 148.8 30.6 280 34-327 20-314 (330)
23 2ooe_A Cleavage stimulation fa 99.8 1.1E-15 3.7E-20 152.9 36.5 378 113-519 44-491 (530)
24 2xm6_A Protein corresponding t 99.8 3.9E-15 1.3E-19 147.3 39.4 347 114-482 38-430 (490)
25 2xm6_A Protein corresponding t 99.8 5.5E-15 1.9E-19 146.2 39.5 365 132-522 24-435 (490)
26 1fch_A Peroxisomal targeting s 99.8 7.3E-17 2.5E-21 153.7 23.9 250 17-279 37-313 (368)
27 3mkr_A Coatomer subunit epsilo 99.7 2.5E-16 8.4E-21 143.5 23.3 225 290-524 38-269 (291)
28 4eqf_A PEX5-related protein; a 99.7 1.3E-16 4.4E-21 151.8 22.4 266 251-549 65-352 (365)
29 4eqf_A PEX5-related protein; a 99.7 5E-16 1.7E-20 147.6 25.7 274 215-518 64-354 (365)
30 3mkr_A Coatomer subunit epsilo 99.7 1.4E-15 4.7E-20 138.5 27.3 251 293-556 6-267 (291)
31 3cv0_A Peroxisome targeting si 99.7 1.7E-15 5.8E-20 141.5 26.5 224 288-518 57-313 (327)
32 3cv0_A Peroxisome targeting si 99.7 1.5E-15 5E-20 142.0 23.8 265 35-313 20-313 (327)
33 4g1t_A Interferon-induced prot 99.7 1.2E-14 3.9E-19 143.5 30.9 386 116-563 52-469 (472)
34 3spa_A Mtrpol, DNA-directed RN 99.7 1.4E-17 4.8E-22 166.9 9.0 151 71-230 127-286 (1134)
35 3spa_A Mtrpol, DNA-directed RN 99.7 1.2E-17 4E-22 167.4 8.5 117 387-504 126-249 (1134)
36 4g1t_A Interferon-induced prot 99.7 3.6E-15 1.2E-19 147.2 25.6 287 217-525 95-407 (472)
37 3uq3_A Heat shock protein STI1 99.6 7.1E-14 2.4E-18 125.5 21.9 218 320-552 8-235 (258)
38 3e4b_A ALGK; tetratricopeptide 99.6 2.4E-13 8.1E-18 132.3 27.1 371 158-553 11-421 (452)
39 2pl2_A Hypothetical conserved 99.6 5E-14 1.7E-18 122.5 17.6 192 316-550 4-211 (217)
40 2pl2_A Hypothetical conserved 99.6 1.8E-13 6E-18 119.0 20.8 206 283-518 2-212 (217)
41 3u4t_A TPR repeat-containing p 99.6 7.8E-13 2.7E-17 119.8 25.5 237 290-530 7-262 (272)
42 3e4b_A ALGK; tetratricopeptide 99.6 4.7E-13 1.6E-17 130.2 25.0 347 191-556 9-390 (452)
43 3uq3_A Heat shock protein STI1 99.6 2.6E-13 8.9E-18 121.8 20.6 119 398-519 115-235 (258)
44 1xnf_A Lipoprotein NLPI; TPR, 99.6 1E-13 3.5E-18 125.9 16.8 244 11-273 11-268 (275)
45 2ho1_A Type 4 fimbrial biogene 99.5 1.4E-12 4.7E-17 116.6 23.5 197 317-519 37-237 (252)
46 2vq2_A PILW, putative fimbrial 99.5 2.4E-12 8.2E-17 112.7 24.1 163 388-553 42-211 (225)
47 2ho1_A Type 4 fimbrial biogene 99.5 2.2E-12 7.7E-17 115.2 23.2 196 355-554 39-239 (252)
48 1ouv_A Conserved hypothetical 99.5 5.6E-12 1.9E-16 114.1 25.9 217 287-518 7-249 (273)
49 3u4t_A TPR repeat-containing p 99.5 1.1E-12 3.7E-17 118.8 21.1 232 318-556 4-253 (272)
50 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.8E-13 6E-18 124.3 15.7 217 320-547 46-269 (275)
51 2q7f_A YRRB protein; TPR, prot 99.5 6.5E-13 2.2E-17 118.0 18.9 196 318-519 24-221 (243)
52 2vq2_A PILW, putative fimbrial 99.5 4.5E-12 1.6E-16 110.9 23.2 205 318-529 9-221 (225)
53 2q7f_A YRRB protein; TPR, prot 99.5 1.1E-12 3.7E-17 116.6 18.3 201 351-556 21-225 (243)
54 3sf4_A G-protein-signaling mod 99.5 4.3E-13 1.5E-17 129.3 16.8 273 218-519 11-335 (406)
55 1ouv_A Conserved hypothetical 99.5 1.5E-11 5E-16 111.3 25.1 225 316-556 5-254 (273)
56 4a1s_A PINS, partner of inscut 99.5 8E-13 2.7E-17 127.7 16.2 266 253-519 50-371 (411)
57 3ro2_A PINS homolog, G-protein 99.5 1.4E-12 4.8E-17 122.1 17.2 131 422-553 185-332 (338)
58 2h6f_A Protein farnesyltransfe 99.5 7.3E-12 2.5E-16 117.8 21.4 227 319-553 99-348 (382)
59 2h6f_A Protein farnesyltransfe 99.4 7.6E-12 2.6E-16 117.7 20.7 239 288-534 99-364 (382)
60 4a1s_A PINS, partner of inscut 99.4 2E-12 7E-17 124.8 16.5 264 218-483 50-371 (411)
61 4abn_A Tetratricopeptide repea 99.4 3.4E-12 1.2E-16 124.9 18.1 209 333-549 84-317 (474)
62 4e6h_A MRNA 3'-END-processing 99.4 1.9E-09 6.4E-14 108.4 37.3 422 89-556 50-573 (679)
63 4e6h_A MRNA 3'-END-processing 99.4 3.1E-09 1.1E-13 106.9 38.5 149 54-213 50-222 (679)
64 3ro2_A PINS homolog, G-protein 99.4 8.2E-12 2.8E-16 116.8 18.8 266 254-519 8-331 (338)
65 3sf4_A G-protein-signaling mod 99.4 1E-11 3.5E-16 119.7 19.8 263 290-553 13-336 (406)
66 3ulq_A Response regulator aspa 99.4 4.3E-11 1.5E-15 114.2 23.1 230 323-553 109-368 (383)
67 3vtx_A MAMA; tetratricopeptide 99.4 3.1E-11 1E-15 101.9 19.7 125 390-518 41-168 (184)
68 3vtx_A MAMA; tetratricopeptide 99.4 4E-11 1.4E-15 101.2 20.3 165 386-555 3-172 (184)
69 2ond_A Cleavage stimulation fa 99.4 1.1E-10 3.8E-15 107.4 24.2 182 370-555 81-272 (308)
70 2ond_A Cleavage stimulation fa 99.3 4.2E-10 1.4E-14 103.6 25.2 212 303-519 33-269 (308)
71 3ulq_A Response regulator aspa 99.3 9.1E-11 3.1E-15 112.0 20.7 225 292-519 109-367 (383)
72 3q15_A PSP28, response regulat 99.3 5.1E-10 1.7E-14 106.5 25.8 228 323-552 107-364 (378)
73 3nf1_A KLC 1, kinesin light ch 99.3 4.2E-11 1.4E-15 110.6 17.0 235 318-553 28-307 (311)
74 3as5_A MAMA; tetratricopeptide 99.3 9.1E-11 3.1E-15 99.0 17.1 164 389-556 9-176 (186)
75 4abn_A Tetratricopeptide repea 99.3 7.1E-11 2.4E-15 115.6 18.4 192 285-518 101-319 (474)
76 4gyw_A UDP-N-acetylglucosamine 99.3 8.4E-11 2.9E-15 119.6 17.0 159 388-551 9-172 (723)
77 3nf1_A KLC 1, kinesin light ch 99.3 1.1E-10 3.8E-15 107.8 16.2 233 285-519 26-306 (311)
78 3q15_A PSP28, response regulat 99.2 8.6E-10 2.9E-14 104.9 20.5 224 292-518 107-363 (378)
79 4i17_A Hypothetical protein; T 99.2 1.2E-09 4E-14 95.7 19.4 193 351-556 5-212 (228)
80 1hz4_A MALT regulatory protein 99.2 2.8E-09 9.7E-14 101.2 23.0 292 258-555 21-351 (373)
81 4i17_A Hypothetical protein; T 99.2 1.6E-09 5.4E-14 94.9 19.3 202 315-529 5-219 (228)
82 1hz4_A MALT regulatory protein 99.2 8E-09 2.7E-13 98.0 25.6 292 219-519 17-348 (373)
83 3as5_A MAMA; tetratricopeptide 99.2 2.6E-09 9E-14 89.9 19.2 95 421-518 77-171 (186)
84 4gyw_A UDP-N-acetylglucosamine 99.2 7.8E-10 2.7E-14 112.6 17.7 162 353-519 9-173 (723)
85 3edt_B KLC 2, kinesin light ch 99.2 1.5E-09 5.2E-14 98.4 17.8 198 355-553 45-281 (283)
86 3mv2_B Coatomer subunit epsilo 99.1 3.7E-08 1.3E-12 87.7 22.1 181 336-522 85-285 (310)
87 1qqe_A Vesicular transport pro 99.1 4.6E-09 1.6E-13 95.7 16.4 160 389-550 78-266 (292)
88 3mv2_B Coatomer subunit epsilo 99.1 2E-08 6.7E-13 89.5 19.6 176 372-556 85-285 (310)
89 2fo7_A Synthetic consensus TPR 99.0 8.4E-09 2.9E-13 81.5 15.8 129 422-554 3-133 (136)
90 3edt_B KLC 2, kinesin light ch 99.0 5.5E-09 1.9E-13 94.7 16.3 199 319-519 45-280 (283)
91 2fo7_A Synthetic consensus TPR 99.0 1.1E-08 3.9E-13 80.7 15.2 127 390-519 3-131 (136)
92 1qqe_A Vesicular transport pro 99.0 2E-08 6.8E-13 91.4 18.5 205 301-519 32-268 (292)
93 4ga2_A E3 SUMO-protein ligase 99.0 3.1E-09 1.1E-13 85.8 10.5 136 394-533 3-144 (150)
94 3qky_A Outer membrane assembly 99.0 1.5E-08 5.2E-13 90.6 15.4 175 316-523 14-228 (261)
95 3urz_A Uncharacterized protein 99.0 1.8E-08 6E-13 86.5 15.1 103 360-465 11-132 (208)
96 2pzi_A Probable serine/threoni 98.9 1.3E-08 4.5E-13 104.2 16.4 166 364-534 402-579 (681)
97 2yhc_A BAMD, UPF0169 lipoprote 98.9 4.9E-08 1.7E-12 85.0 17.5 87 468-558 109-218 (225)
98 3qou_A Protein YBBN; thioredox 98.9 3.1E-08 1.1E-12 89.8 16.6 162 385-551 114-282 (287)
99 3qky_A Outer membrane assembly 98.9 5.3E-08 1.8E-12 87.1 17.9 205 284-509 13-250 (261)
100 2r5s_A Uncharacterized protein 98.9 1.6E-08 5.4E-13 84.3 13.3 156 392-552 10-172 (176)
101 2uy1_A Cleavage stimulation fa 98.9 1.2E-06 4E-11 85.6 26.9 368 127-552 6-412 (493)
102 3rjv_A Putative SEL1 repeat pr 98.9 1.2E-07 4.2E-12 81.4 17.4 162 387-555 17-199 (212)
103 3urz_A Uncharacterized protein 98.9 6.3E-08 2.2E-12 83.0 15.5 156 394-555 10-188 (208)
104 2r5s_A Uncharacterized protein 98.9 2.8E-08 9.4E-13 82.8 12.4 155 361-518 14-171 (176)
105 2uy1_A Cleavage stimulation fa 98.9 4.1E-06 1.4E-10 81.8 29.4 104 17-144 6-118 (493)
106 2pzi_A Probable serine/threoni 98.8 4.7E-08 1.6E-12 100.1 16.3 185 328-519 402-604 (681)
107 3qou_A Protein YBBN; thioredox 98.8 1.4E-07 4.9E-12 85.4 17.4 164 352-518 116-282 (287)
108 4ga2_A E3 SUMO-protein ligase 98.8 2.5E-08 8.6E-13 80.3 10.0 141 361-506 5-149 (150)
109 2vsy_A XCC0866; transferase, g 98.8 7.5E-08 2.6E-12 96.9 15.4 159 366-529 2-168 (568)
110 2yhc_A BAMD, UPF0169 lipoprote 98.8 1.6E-07 5.6E-12 81.6 15.5 185 319-519 6-212 (225)
111 1hh8_A P67PHOX, NCF-2, neutrop 98.8 3.7E-07 1.3E-11 78.6 17.5 130 392-523 10-154 (213)
112 3u3w_A Transcriptional activat 98.8 1.4E-06 4.6E-11 79.3 21.9 158 394-552 81-265 (293)
113 4gco_A Protein STI-1; structur 98.8 1.7E-07 5.7E-12 72.7 13.2 99 421-523 14-114 (126)
114 2vsy_A XCC0866; transferase, g 98.8 1.7E-07 5.7E-12 94.4 16.5 151 330-485 2-158 (568)
115 2qfc_A PLCR protein; TPR, HTH, 98.7 1.5E-06 5.2E-11 79.0 20.8 157 393-550 80-263 (293)
116 1hh8_A P67PHOX, NCF-2, neutrop 98.7 5.5E-07 1.9E-11 77.5 16.4 137 8-145 9-151 (213)
117 2ifu_A Gamma-SNAP; membrane fu 98.7 3E-07 1E-11 84.3 15.3 197 299-518 4-222 (307)
118 3dra_A Protein farnesyltransfe 98.7 1.7E-05 5.6E-10 71.5 26.1 179 368-552 84-286 (306)
119 1a17_A Serine/threonine protei 98.7 6.7E-07 2.3E-11 73.3 15.5 126 421-551 14-144 (166)
120 2ifu_A Gamma-SNAP; membrane fu 98.7 5.4E-07 1.8E-11 82.6 16.3 194 330-551 4-222 (307)
121 3gyz_A Chaperone protein IPGC; 98.7 3E-07 1E-11 73.6 12.3 101 420-524 36-138 (151)
122 3gyz_A Chaperone protein IPGC; 98.7 2.4E-07 8.3E-12 74.1 11.5 95 388-484 36-133 (151)
123 3u3w_A Transcriptional activat 98.7 3.9E-06 1.3E-10 76.3 21.0 166 323-519 81-265 (293)
124 3rjv_A Putative SEL1 repeat pr 98.6 2.1E-06 7.3E-11 73.6 17.9 160 353-519 18-196 (212)
125 4gco_A Protein STI-1; structur 98.6 3E-07 1E-11 71.3 11.3 102 451-555 8-112 (126)
126 3dra_A Protein farnesyltransfe 98.6 1.2E-05 4E-10 72.5 22.2 217 15-244 42-286 (306)
127 2lni_A Stress-induced-phosphop 98.6 1.4E-06 4.7E-11 68.3 14.2 111 419-533 15-128 (133)
128 2qfc_A PLCR protein; TPR, HTH, 98.6 1.2E-06 4E-11 79.8 15.5 126 394-519 121-265 (293)
129 4gcn_A Protein STI-1; structur 98.6 6.2E-07 2.1E-11 69.6 11.6 106 421-528 9-121 (127)
130 1p5q_A FKBP52, FK506-binding p 98.6 5.1E-07 1.7E-11 83.7 13.0 62 456-519 197-258 (336)
131 2c2l_A CHIP, carboxy terminus 98.6 4E-07 1.4E-11 82.1 11.9 191 354-554 5-200 (281)
132 1a17_A Serine/threonine protei 98.6 1.3E-06 4.4E-11 71.6 14.1 125 390-518 15-144 (166)
133 1na0_A Designed protein CTPR3; 98.6 2.2E-06 7.4E-11 66.1 14.5 97 420-519 9-105 (125)
134 3gw4_A Uncharacterized protein 98.6 1.9E-06 6.5E-11 73.4 15.4 154 364-518 3-174 (203)
135 2vgx_A Chaperone SYCD; alterna 98.6 3E-07 1E-11 73.7 9.4 106 410-519 9-117 (148)
136 2vyi_A SGTA protein; chaperone 98.5 1.7E-06 6E-11 67.3 13.5 96 421-519 13-108 (131)
137 2lni_A Stress-induced-phosphop 98.5 2.9E-06 9.8E-11 66.4 14.5 118 385-506 13-133 (133)
138 1na0_A Designed protein CTPR3; 98.5 3.2E-06 1.1E-10 65.2 14.5 115 388-505 9-125 (125)
139 2vgx_A Chaperone SYCD; alterna 98.5 4.4E-07 1.5E-11 72.7 9.6 97 387-485 20-119 (148)
140 4f3v_A ESX-1 secretion system 98.5 3.9E-06 1.3E-10 73.7 15.8 127 394-522 108-240 (282)
141 2e2e_A Formate-dependent nitri 98.5 7.6E-07 2.6E-11 74.0 11.0 123 398-524 20-149 (177)
142 2vyi_A SGTA protein; chaperone 98.5 3.3E-06 1.1E-10 65.7 14.2 116 388-507 12-130 (131)
143 4f3v_A ESX-1 secretion system 98.5 3.5E-06 1.2E-10 74.0 15.4 130 422-556 104-240 (282)
144 2e2e_A Formate-dependent nitri 98.5 6.1E-07 2.1E-11 74.6 10.3 120 363-485 20-145 (177)
145 3gw4_A Uncharacterized protein 98.5 1E-06 3.6E-11 75.0 12.0 98 421-518 27-134 (203)
146 3upv_A Heat shock protein STI1 98.5 2.2E-06 7.7E-11 66.4 12.9 96 420-519 4-100 (126)
147 2fbn_A 70 kDa peptidylprolyl i 98.5 2E-07 7E-12 79.2 6.9 152 398-554 14-187 (198)
148 1elw_A TPR1-domain of HOP; HOP 98.4 6.9E-06 2.4E-10 62.5 14.1 96 420-519 4-100 (118)
149 2dba_A Smooth muscle cell asso 98.4 6.4E-06 2.2E-10 65.8 14.4 97 419-519 27-127 (148)
150 2xcb_A PCRH, regulatory protei 98.4 2.8E-06 9.7E-11 67.5 11.7 96 420-519 18-114 (142)
151 2xcb_A PCRH, regulatory protei 98.4 1.6E-06 5.6E-11 68.9 10.1 109 442-555 6-117 (142)
152 1p5q_A FKBP52, FK506-binding p 98.4 3E-06 1E-10 78.6 13.0 127 388-518 147-292 (336)
153 2kck_A TPR repeat; tetratricop 98.4 3.3E-06 1.1E-10 63.6 10.5 97 420-519 6-105 (112)
154 2if4_A ATFKBP42; FKBP-like, al 98.4 1.9E-06 6.4E-11 80.0 10.6 99 457-557 232-332 (338)
155 1elr_A TPR2A-domain of HOP; HO 98.3 4.9E-06 1.7E-10 64.7 11.4 110 420-530 4-119 (131)
156 3q49_B STIP1 homology and U bo 98.3 6.7E-06 2.3E-10 64.7 12.2 98 418-519 7-105 (137)
157 4b4t_Q 26S proteasome regulato 98.3 0.00016 5.3E-09 69.9 24.2 164 320-483 58-244 (434)
158 3q7a_A Farnesyltransferase alp 98.3 0.00037 1.3E-08 63.4 24.7 216 330-553 67-331 (349)
159 4b4t_Q 26S proteasome regulato 98.3 1.9E-05 6.4E-10 76.4 17.6 195 325-519 12-244 (434)
160 3sz7_A HSC70 cochaperone (SGT) 98.3 5.6E-06 1.9E-10 67.7 11.8 94 422-519 13-107 (164)
161 2kck_A TPR repeat; tetratricop 98.3 5E-06 1.7E-10 62.6 10.7 101 454-557 5-110 (112)
162 3sz7_A HSC70 cochaperone (SGT) 98.3 1E-05 3.5E-10 66.0 13.2 112 387-500 10-124 (164)
163 4gcn_A Protein STI-1; structur 98.3 5.6E-06 1.9E-10 64.2 10.9 103 390-497 10-122 (127)
164 3upv_A Heat shock protein STI1 98.3 6.9E-06 2.4E-10 63.6 11.5 97 455-554 4-102 (126)
165 1hxi_A PEX5, peroxisome target 98.3 3.7E-06 1.3E-10 64.5 9.5 91 425-519 22-113 (121)
166 1hxi_A PEX5, peroxisome target 98.3 5E-06 1.7E-10 63.8 10.2 96 457-555 19-116 (121)
167 3ro3_A PINS homolog, G-protein 98.3 5E-06 1.7E-10 67.6 10.9 130 422-552 11-157 (164)
168 2c2l_A CHIP, carboxy terminus 98.3 3.4E-06 1.2E-10 76.0 10.1 158 387-553 3-164 (281)
169 2xev_A YBGF; tetratricopeptide 98.3 1.1E-05 3.8E-10 62.6 12.0 96 424-523 6-109 (129)
170 3q49_B STIP1 homology and U bo 98.3 1.4E-05 4.9E-10 62.8 12.5 101 453-556 7-109 (137)
171 3lvg_A Clathrin heavy chain 1; 98.3 7.6E-08 2.6E-12 88.4 -1.2 262 4-338 53-325 (624)
172 1elw_A TPR1-domain of HOP; HOP 98.3 2.7E-05 9.3E-10 59.0 13.6 107 388-498 4-113 (118)
173 2dba_A Smooth muscle cell asso 98.3 3.5E-05 1.2E-09 61.3 14.8 111 386-500 26-142 (148)
174 3rkv_A Putative peptidylprolyl 98.2 1.5E-05 5.2E-10 64.9 12.0 108 421-530 12-138 (162)
175 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 9.3E-06 3.2E-10 78.8 12.3 118 390-511 270-405 (457)
176 3q7a_A Farnesyltransferase alp 98.2 0.00011 3.9E-09 66.8 18.5 221 11-244 60-330 (349)
177 3dss_A Geranylgeranyl transfer 98.2 0.00079 2.7E-08 61.0 23.5 78 370-448 91-173 (331)
178 2fbn_A 70 kDa peptidylprolyl i 98.2 2.7E-05 9.1E-10 65.9 13.3 125 390-518 40-184 (198)
179 1elr_A TPR2A-domain of HOP; HO 98.2 1.2E-05 4.1E-10 62.4 10.3 111 389-502 5-123 (131)
180 3ro3_A PINS homolog, G-protein 98.2 1.3E-05 4.3E-10 65.1 10.5 129 390-518 11-156 (164)
181 3k9i_A BH0479 protein; putativ 98.2 2.2E-06 7.7E-11 65.4 5.3 85 433-519 3-89 (117)
182 1wao_1 Serine/threonine protei 98.1 2.9E-05 9.8E-10 75.6 13.7 117 395-515 13-134 (477)
183 1wao_1 Serine/threonine protei 98.1 6.7E-06 2.3E-10 80.1 7.9 119 426-549 12-135 (477)
184 2hr2_A Hypothetical protein; a 98.0 3.4E-05 1.2E-09 60.9 10.0 95 423-519 14-130 (159)
185 3k9i_A BH0479 protein; putativ 98.0 6.6E-06 2.2E-10 62.7 5.7 85 400-486 2-92 (117)
186 2xev_A YBGF; tetratricopeptide 98.0 0.0001 3.4E-09 57.1 12.6 90 394-485 8-106 (129)
187 1ihg_A Cyclophilin 40; ppiase 98.0 4E-05 1.4E-09 71.8 11.6 119 423-544 226-361 (370)
188 2if4_A ATFKBP42; FKBP-like, al 97.9 3.2E-05 1.1E-09 71.6 9.2 94 422-519 232-327 (338)
189 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 6.1E-05 2.1E-09 73.0 11.5 146 401-551 247-413 (457)
190 3rkv_A Putative peptidylprolyl 97.9 7.2E-05 2.5E-09 60.8 10.1 100 456-556 12-129 (162)
191 3n71_A Histone lysine methyltr 97.9 4.1E-05 1.4E-09 74.0 9.9 60 422-481 353-419 (490)
192 3dss_A Geranylgeranyl transfer 97.9 0.0058 2E-07 55.3 22.9 228 297-532 40-318 (331)
193 2hr2_A Hypothetical protein; a 97.9 0.0001 3.6E-09 58.2 10.0 93 392-484 15-131 (159)
194 1klx_A Cysteine rich protein B 97.9 0.0003 1E-08 55.1 12.7 112 434-555 9-128 (138)
195 1ihg_A Cyclophilin 40; ppiase 97.9 9.5E-05 3.3E-09 69.2 11.4 117 392-512 227-362 (370)
196 2l6j_A TPR repeat-containing p 97.8 3E-05 1E-09 58.2 6.3 94 419-517 3-104 (111)
197 2l6j_A TPR repeat-containing p 97.8 2.1E-05 7E-10 59.1 4.3 92 454-548 3-102 (111)
198 3n71_A Histone lysine methyltr 97.7 9.3E-05 3.2E-09 71.6 9.2 123 432-554 321-465 (490)
199 1dce_A Protein (RAB geranylger 97.7 0.00082 2.8E-08 66.7 16.2 166 370-541 46-243 (567)
200 2kat_A Uncharacterized protein 97.7 0.00028 9.5E-09 53.3 9.6 78 438-519 3-81 (115)
201 3ma5_A Tetratricopeptide repea 97.6 0.00016 5.6E-09 52.9 7.5 62 420-483 7-69 (100)
202 1zu2_A Mitochondrial import re 97.6 0.0001 3.5E-09 58.1 6.5 112 432-554 14-148 (158)
203 2kat_A Uncharacterized protein 97.6 0.00026 8.7E-09 53.5 8.2 78 406-485 3-83 (115)
204 1na3_A Designed protein CTPR2; 97.6 0.0009 3.1E-08 47.6 10.8 79 421-503 10-89 (91)
205 3ma5_A Tetratricopeptide repea 97.5 0.00072 2.5E-08 49.4 8.8 64 454-519 6-69 (100)
206 1na3_A Designed protein CTPR2; 97.4 0.00096 3.3E-08 47.5 9.3 78 455-534 9-88 (91)
207 1klx_A Cysteine rich protein B 97.4 0.0028 9.4E-08 49.5 12.5 108 367-482 9-124 (138)
208 1dce_A Protein (RAB geranylger 97.4 0.0079 2.7E-07 59.6 18.5 151 401-555 42-223 (567)
209 1zu2_A Mitochondrial import re 97.3 0.00028 9.7E-09 55.6 5.4 95 400-499 14-132 (158)
210 3ly7_A Transcriptional activat 97.3 0.013 4.4E-07 53.4 16.1 143 383-528 189-348 (372)
211 3lvg_A Clathrin heavy chain 1; 97.2 0.00042 1.4E-08 64.3 5.4 416 3-477 81-534 (624)
212 3mkq_A Coatomer beta'-subunit; 97.0 0.015 5E-07 61.2 16.7 102 398-518 662-763 (814)
213 3ly7_A Transcriptional activat 97.0 0.009 3.1E-07 54.4 12.4 141 349-495 190-347 (372)
214 1pc2_A Mitochondria fission pr 96.9 0.011 3.7E-07 46.0 10.6 92 436-530 14-111 (152)
215 3qww_A SET and MYND domain-con 96.8 0.0051 1.8E-07 58.4 10.1 87 432-518 310-409 (433)
216 2kc7_A BFR218_protein; tetratr 96.8 0.0014 4.9E-08 47.6 5.0 56 427-484 7-64 (99)
217 3qwp_A SET and MYND domain-con 96.7 0.0085 2.9E-07 57.0 10.8 92 428-519 295-399 (429)
218 3bee_A Putative YFRE protein; 96.7 0.01 3.6E-07 42.2 8.5 68 453-522 4-75 (93)
219 3qww_A SET and MYND domain-con 96.7 0.0039 1.3E-07 59.2 8.0 84 400-483 310-410 (433)
220 3bee_A Putative YFRE protein; 96.6 0.021 7.1E-07 40.6 9.3 67 417-485 3-73 (93)
221 3mkq_B Coatomer subunit alpha; 96.5 0.2 6.8E-06 40.0 15.6 130 395-550 12-141 (177)
222 3qwp_A SET and MYND domain-con 96.5 0.0067 2.3E-07 57.7 8.3 89 395-483 294-399 (429)
223 2kc7_A BFR218_protein; tetratr 96.4 0.03 1E-06 40.2 9.8 52 397-448 9-63 (99)
224 3mkq_A Coatomer beta'-subunit; 96.4 0.22 7.6E-06 52.1 20.2 155 123-312 607-762 (814)
225 2v5f_A Prolyl 4-hydroxylase su 96.3 0.03 1E-06 40.8 9.2 68 456-523 6-79 (104)
226 3u64_A Protein TP_0956; tetrat 96.1 0.033 1.1E-06 48.5 9.6 79 436-519 179-268 (301)
227 3mkq_B Coatomer subunit alpha; 96.0 0.45 1.5E-05 38.1 15.3 127 195-343 15-141 (177)
228 4ady_A RPN2, 26S proteasome re 95.8 2.2 7.6E-05 44.2 31.1 262 261-528 384-666 (963)
229 1nzn_A CGI-135 protein, fissio 95.8 0.081 2.8E-06 39.5 9.1 91 434-527 15-111 (126)
230 2v5f_A Prolyl 4-hydroxylase su 95.3 0.2 6.8E-06 36.4 9.9 65 420-484 5-75 (104)
231 3u64_A Protein TP_0956; tetrat 95.2 0.075 2.6E-06 46.3 8.4 88 471-561 179-277 (301)
232 4h7y_A Dual specificity protei 95.2 0.21 7.2E-06 38.3 9.7 113 418-533 11-138 (161)
233 1pc2_A Mitochondria fission pr 95.1 0.26 8.7E-06 38.4 10.2 65 418-483 30-99 (152)
234 1wy6_A Hypothetical protein ST 94.7 0.95 3.3E-05 34.0 12.6 140 125-282 17-156 (172)
235 1wy6_A Hypothetical protein ST 94.5 1.1 3.7E-05 33.7 14.3 57 460-518 96-152 (172)
236 4ady_A RPN2, 26S proteasome re 94.4 5.7 0.0002 41.3 36.9 251 295-552 383-657 (963)
237 3ffl_A Anaphase-promoting comp 94.3 0.29 9.9E-06 38.4 8.8 112 394-519 26-150 (167)
238 4h7y_A Dual specificity protei 93.7 0.57 1.9E-05 36.0 9.1 101 454-557 12-127 (161)
239 2wpv_A GET4, UPF0363 protein Y 93.7 3.6 0.00012 36.6 18.6 129 189-328 37-176 (312)
240 4fhn_B Nucleoporin NUP120; pro 92.6 3.8 0.00013 44.5 17.4 210 289-517 815-1047(1139)
241 3txn_A 26S proteasome regulato 92.5 5.3 0.00018 37.0 15.7 158 392-550 23-207 (394)
242 2wpv_A GET4, UPF0363 protein Y 92.2 5.9 0.0002 35.2 16.4 168 73-279 35-216 (312)
243 4b4t_P 26S proteasome regulato 92.0 8.5 0.00029 36.6 18.3 188 331-519 30-246 (445)
244 3ffl_A Anaphase-promoting comp 92.0 0.8 2.7E-05 35.9 8.0 113 427-550 27-148 (167)
245 1nzn_A CGI-135 protein, fissio 91.7 0.94 3.2E-05 33.8 7.8 66 418-484 33-103 (126)
246 4gns_B Protein CSD3, chitin bi 91.4 2.5 8.6E-05 42.9 13.1 51 429-481 346-397 (754)
247 2ff4_A Probable regulatory pro 91.2 2 6.8E-05 40.1 11.7 68 424-493 175-247 (388)
248 3lpz_A GET4 (YOR164C homolog); 90.4 9.6 0.00033 34.2 20.9 130 188-328 38-178 (336)
249 4gns_B Protein CSD3, chitin bi 90.1 1.3 4.6E-05 44.8 9.9 52 465-518 347-398 (754)
250 1qsa_A Protein (soluble lytic 90.1 16 0.00055 36.3 32.5 310 125-448 16-347 (618)
251 3lpz_A GET4 (YOR164C homolog); 89.0 12 0.00042 33.5 19.3 168 73-279 37-215 (336)
252 3o48_A Mitochondria fission 1 88.9 6 0.00021 29.7 10.4 78 451-529 36-117 (134)
253 4fhn_B Nucleoporin NUP120; pro 88.7 5 0.00017 43.6 13.9 147 9-166 816-987 (1139)
254 2ff4_A Probable regulatory pro 88.6 3.6 0.00012 38.3 11.1 57 460-518 176-232 (388)
255 4b4t_P 26S proteasome regulato 87.0 21 0.00072 33.8 22.6 150 229-379 29-203 (445)
256 1y8m_A FIS1; mitochondria, unk 85.8 9.9 0.00034 28.9 11.6 77 452-529 36-116 (144)
257 1zbp_A Hypothetical protein VP 85.4 6.1 0.00021 34.0 9.5 115 428-554 5-130 (273)
258 1qsa_A Protein (soluble lytic 85.3 31 0.0011 34.2 30.7 115 434-552 228-347 (618)
259 3o48_A Mitochondria fission 1 85.2 5.5 0.00019 29.9 8.1 67 348-414 35-104 (134)
260 4b4t_R RPN7, 26S proteasome re 85.0 17 0.00057 34.4 13.6 95 391-485 134-238 (429)
261 1y8m_A FIS1; mitochondria, unk 81.5 16 0.00053 27.9 11.1 73 417-492 36-111 (144)
262 1v54_E Cytochrome C oxidase po 81.2 12 0.00041 26.4 9.5 63 130-193 25-87 (109)
263 3txn_A 26S proteasome regulato 80.6 36 0.0012 31.5 26.5 59 322-380 104-166 (394)
264 4b4t_R RPN7, 26S proteasome re 79.3 10 0.00035 35.8 9.8 100 420-519 131-236 (429)
265 1v54_E Cytochrome C oxidase po 78.3 15 0.00052 25.9 9.5 59 438-498 28-86 (109)
266 2y69_E Cytochrome C oxidase su 76.7 21 0.00073 26.7 9.0 62 131-193 69-130 (152)
267 1wdy_A 2-5A-dependent ribonucl 74.4 41 0.0014 28.9 15.2 15 296-310 226-240 (285)
268 2uwj_G Type III export protein 73.1 21 0.00073 25.0 8.3 78 165-246 21-98 (115)
269 2p58_C Putative type III secre 72.3 22 0.00077 24.9 8.7 78 165-246 22-99 (116)
270 3t8k_A Uncharacterized protein 71.5 38 0.0013 27.2 11.2 161 14-180 12-181 (186)
271 2uwj_G Type III export protein 71.3 24 0.00081 24.8 8.3 74 267-344 22-95 (115)
272 2p58_C Putative type III secre 70.0 26 0.00088 24.7 9.1 74 267-344 23-96 (116)
273 2y69_E Cytochrome C oxidase su 69.4 33 0.0011 25.7 9.5 60 438-499 71-130 (152)
274 3esl_A Checkpoint serine/threo 67.8 49 0.0017 27.0 10.6 58 433-491 92-150 (202)
275 3eiq_C Programmed cell death p 66.4 77 0.0026 28.8 12.0 66 320-387 220-287 (358)
276 4b4t_S RPN3, 26S proteasome re 66.1 74 0.0025 30.6 11.9 59 390-448 233-298 (523)
277 1k1a_A B-cell lymphoma 3-encod 65.9 40 0.0014 28.1 9.8 26 78-103 13-38 (241)
278 3hra_A Ankyrin repeat family p 64.9 53 0.0018 26.4 11.3 179 12-205 9-195 (201)
279 2zu6_B Programmed cell death p 64.5 66 0.0023 28.5 10.7 67 320-388 169-237 (307)
280 2qx5_A Nucleoporin NIC96; mRNA 62.8 1.3E+02 0.0044 30.1 22.8 42 6-48 154-198 (661)
281 3jxi_A Vanilloid receptor-rela 61.1 46 0.0016 28.3 9.4 123 80-209 11-161 (260)
282 1k1a_A B-cell lymphoma 3-encod 59.8 75 0.0025 26.4 13.9 88 121-212 12-103 (241)
283 3kea_A K1L; tropism, ANK repea 59.6 63 0.0022 28.1 10.0 226 17-275 8-242 (285)
284 1ug3_A EIF4GI, eukaryotic prot 58.7 45 0.0015 30.1 8.9 25 219-243 14-38 (339)
285 1zbp_A Hypothetical protein VP 56.8 96 0.0033 26.7 13.6 51 363-414 7-57 (273)
286 2zu6_B Programmed cell death p 56.6 71 0.0024 28.3 9.5 65 290-355 170-239 (307)
287 3ltj_A Alpharep-4; protein eng 56.1 78 0.0027 25.5 15.8 14 288-301 123-136 (201)
288 3jxi_A Vanilloid receptor-rela 56.1 35 0.0012 29.1 7.7 90 121-210 8-115 (260)
289 3aji_A 26S proteasome non-ATPa 54.1 91 0.0031 25.7 10.9 22 10-31 8-29 (231)
290 3ltm_A Alpha-REP4; protein eng 52.9 91 0.0031 25.3 18.2 98 418-525 93-190 (211)
291 2d2s_A Exocyst complex compone 52.8 57 0.0019 27.5 7.9 23 121-143 24-46 (235)
292 2nsz_A Programmed cell death p 52.7 69 0.0024 23.9 8.1 64 391-455 10-78 (129)
293 3b7b_A Euchromatic histone-lys 52.3 72 0.0025 26.5 9.0 40 240-279 194-235 (237)
294 1wgl_A TOLL-interacting protei 52.0 26 0.00089 21.8 4.2 49 508-559 10-58 (59)
295 1wdy_A 2-5A-dependent ribonucl 50.0 1.2E+02 0.0041 25.8 14.0 83 120-210 7-94 (285)
296 3eiq_C Programmed cell death p 48.4 1.6E+02 0.0054 26.8 13.1 63 391-454 220-287 (358)
297 4a1g_A Mitotic checkpoint seri 47.7 95 0.0032 24.0 10.0 51 439-490 84-135 (152)
298 2nsz_A Programmed cell death p 47.3 53 0.0018 24.5 6.2 21 323-343 13-33 (129)
299 3bu8_A Telomeric repeat-bindin 46.4 83 0.0028 25.8 7.3 48 436-483 88-142 (235)
300 2b7e_A PRE-mRNA processing pro 45.2 22 0.00074 22.1 3.0 30 471-501 2-31 (59)
301 1bpo_A Protein (clathrin); cla 44.8 2.1E+02 0.0071 27.1 12.4 127 382-518 355-483 (494)
302 3eu9_A Huntingtin-interacting 44.8 1.3E+02 0.0044 24.7 10.2 17 14-30 15-31 (240)
303 3i5p_A Nucleoporin NUP170; hel 44.5 58 0.002 31.5 7.4 65 488-554 175-247 (525)
304 2ion_A PDCD4, programmed cell 43.0 64 0.0022 24.9 6.2 22 322-343 14-35 (152)
305 2r9g_A AAA ATPase, central reg 42.8 1.3E+02 0.0046 24.3 9.6 56 431-488 25-85 (204)
306 2d2s_A Exocyst complex compone 42.5 1E+02 0.0035 26.0 7.9 84 395-481 25-117 (235)
307 2wvi_A Mitotic checkpoint seri 42.2 1.2E+02 0.0042 23.7 10.0 53 439-492 79-132 (164)
308 1wty_A Hypothetical protein TT 42.2 98 0.0034 22.6 8.0 77 435-518 3-79 (119)
309 3kae_A CDC27, possible protein 41.5 1.3E+02 0.0044 23.8 9.5 81 398-481 43-140 (242)
310 3hra_A Ankyrin repeat family p 41.4 1.3E+02 0.0045 23.9 11.3 153 123-285 10-172 (201)
311 3eu9_A Huntingtin-interacting 40.6 1.5E+02 0.0052 24.3 10.5 82 121-210 45-131 (240)
312 2ion_A PDCD4, programmed cell 40.3 83 0.0028 24.3 6.5 63 391-454 12-79 (152)
313 3kea_A K1L; tropism, ANK repea 40.2 1.8E+02 0.0062 25.1 11.5 142 122-275 35-182 (285)
314 3aji_A 26S proteasome non-ATPa 40.1 1.5E+02 0.0052 24.2 10.6 20 121-140 9-28 (231)
315 2qx5_A Nucleoporin NIC96; mRNA 40.1 3E+02 0.01 27.6 21.2 42 40-82 156-197 (661)
316 1bd8_A P19INK4D CDK4/6 inhibit 38.7 1.2E+02 0.0043 22.8 9.3 15 16-30 10-24 (156)
317 3ljn_A Hypothetical protein; a 38.4 2.2E+02 0.0075 25.5 12.7 25 122-146 88-112 (364)
318 4gq2_M Nucleoporin NUP120; bet 37.6 2E+02 0.0068 30.5 11.0 27 493-519 899-925 (950)
319 3esl_A Checkpoint serine/threo 37.5 1.7E+02 0.0057 23.9 10.0 25 390-414 117-141 (202)
320 4gq2_M Nucleoporin NUP120; bet 36.8 2.9E+02 0.01 29.2 12.1 122 291-433 815-949 (950)
321 3kae_A CDC27, possible protein 35.6 1.6E+02 0.0056 23.2 8.6 60 83-142 74-141 (242)
322 2fe3_A Peroxide operon regulat 35.5 1.1E+02 0.0038 23.2 6.6 46 118-163 24-69 (145)
323 3bu8_A Telomeric repeat-bindin 35.0 1.9E+02 0.0065 23.8 8.3 27 394-420 120-147 (235)
324 1n11_A Ankyrin; clathrin, BAND 34.7 2.8E+02 0.0096 25.7 17.2 86 10-103 16-105 (437)
325 3bge_A Predicted ATPase; struc 34.0 1.9E+02 0.0064 23.5 7.9 40 431-470 18-57 (201)
326 2fe3_A Peroxide operon regulat 33.8 58 0.002 24.9 4.7 64 22-85 7-70 (145)
327 2xig_A Ferric uptake regulatio 33.7 92 0.0031 23.9 5.9 36 165-200 41-76 (150)
328 3ygs_P Procaspase 9; apoptosis 33.6 48 0.0016 23.2 3.8 39 50-92 51-89 (97)
329 2dod_A Transcription elongatio 31.6 63 0.0022 21.8 3.9 32 470-502 15-46 (82)
330 2r9g_A AAA ATPase, central reg 31.3 2.1E+02 0.0072 23.2 8.9 37 329-367 26-62 (204)
331 2pnn_A Transient receptor pote 31.1 2.4E+02 0.0083 23.8 9.6 198 75-276 14-255 (273)
332 1bd8_A P19INK4D CDK4/6 inhibit 31.1 1.7E+02 0.0057 22.0 8.8 12 127-138 11-22 (156)
333 3b7b_A Euchromatic histone-lys 31.1 2.2E+02 0.0075 23.3 12.2 17 295-311 216-232 (237)
334 4ets_A Ferric uptake regulatio 30.4 1.2E+02 0.0042 23.6 6.1 42 158-199 40-83 (162)
335 3bge_A Predicted ATPase; struc 30.3 1.9E+02 0.0063 23.5 7.0 44 323-367 10-56 (201)
336 3ctd_A Putative ATPase, AAA fa 30.3 2.3E+02 0.0078 23.3 8.9 39 432-470 47-85 (213)
337 1mzb_A Ferric uptake regulatio 30.2 1E+02 0.0036 23.1 5.6 43 118-160 20-63 (136)
338 3ygs_P Procaspase 9; apoptosis 30.1 79 0.0027 22.1 4.5 38 300-337 51-88 (97)
339 1uzc_A Hypothetical protein FL 29.4 69 0.0024 20.9 3.7 32 470-502 13-44 (71)
340 3ctd_A Putative ATPase, AAA fa 29.0 2.4E+02 0.0082 23.1 8.2 62 322-384 37-106 (213)
341 2w57_A Ferric uptake regulatio 27.8 1.1E+02 0.0039 23.4 5.5 40 120-159 21-61 (150)
342 2fu4_A Ferric uptake regulatio 27.6 1.3E+02 0.0046 19.8 5.9 61 139-200 6-67 (83)
343 4b4t_S RPN3, 26S proteasome re 27.5 2.7E+02 0.0093 26.8 8.9 26 493-518 233-258 (523)
344 3ltj_A Alpharep-4; protein eng 27.1 2.4E+02 0.0081 22.4 18.9 78 418-504 119-196 (201)
345 3ltm_A Alpha-REP4; protein eng 27.0 2.5E+02 0.0084 22.6 18.7 79 418-505 124-202 (211)
346 2etb_A Transient receptor pote 26.6 1.3E+02 0.0043 25.4 6.3 25 123-147 7-31 (256)
347 2xig_A Ferric uptake regulatio 26.3 97 0.0033 23.8 4.9 63 23-85 13-75 (150)
348 2o03_A Probable zinc uptake re 26.3 1E+02 0.0035 22.9 4.9 45 120-164 15-59 (131)
349 2o03_A Probable zinc uptake re 25.8 78 0.0027 23.6 4.1 48 40-87 14-61 (131)
350 3eyy_A Putative iron uptake re 25.3 91 0.0031 23.8 4.5 42 119-161 22-63 (145)
351 2keb_A DNA polymerase subunit 25.2 1.8E+02 0.0061 20.4 7.0 60 438-497 27-88 (101)
352 2fv2_A RCD1 required for cell 25.1 1.6E+02 0.0054 25.2 6.0 59 460-518 178-236 (268)
353 2etb_A Transient receptor pote 24.8 3E+02 0.01 22.9 11.0 124 78-209 6-157 (256)
354 4ets_A Ferric uptake regulatio 24.6 77 0.0026 24.8 4.0 53 34-86 30-84 (162)
355 1ug3_A EIF4GI, eukaryotic prot 24.4 1.7E+02 0.0058 26.3 6.8 27 290-316 15-41 (339)
356 1n11_A Ankyrin; clathrin, BAND 24.3 4.2E+02 0.014 24.4 16.3 177 10-210 49-234 (437)
357 3mwm_A ZUR, putative metal upt 24.2 95 0.0033 23.4 4.4 46 119-164 17-62 (139)
358 1oy3_D Transcription factor in 23.9 2.6E+02 0.0088 23.6 8.0 182 9-210 10-247 (282)
359 4aez_C MAD3, mitotic spindle c 23.4 3.2E+02 0.011 22.7 9.4 53 437-490 131-184 (223)
360 1oai_A Nuclear RNA export fact 23.2 68 0.0023 19.9 2.7 24 468-491 33-56 (59)
361 1jog_A Hypothetical protein HI 22.8 1.8E+02 0.0062 22.2 5.7 39 472-510 55-96 (146)
362 3mwm_A ZUR, putative metal upt 22.6 76 0.0026 24.0 3.6 47 39-85 16-62 (139)
363 2ijq_A Hypothetical protein; s 22.3 2.8E+02 0.0096 21.6 7.8 14 468-481 45-58 (161)
364 4g8k_A 2-5A-dependent ribonucl 22.3 4E+02 0.014 23.4 15.7 148 122-285 172-328 (337)
365 3mv2_A Coatomer subunit alpha; 22.0 4.2E+02 0.014 23.5 10.6 109 398-506 124-258 (325)
366 4b93_B Ankyrin repeat domain-c 22.0 2.8E+02 0.0096 23.6 7.6 16 16-31 19-34 (269)
367 3d9h_A CDNA FLJ77766, highly s 21.9 2E+02 0.0069 24.7 6.8 16 11-26 18-33 (285)
368 3crd_A Raidd; caspase recruitm 21.7 1.9E+02 0.0066 20.1 5.3 43 20-65 50-92 (100)
369 4hbd_A KN motif and ankyrin re 21.4 3.5E+02 0.012 23.0 8.2 56 192-247 115-174 (276)
370 2p1h_A APAF-1, apoptotic prote 21.2 1.1E+02 0.0037 21.1 3.9 36 49-88 49-84 (94)
371 2yru_A Steroid receptor RNA ac 21.0 1.3E+02 0.0046 21.9 4.3 43 136-178 47-89 (118)
372 3pvs_A Replication-associated 20.8 5.3E+02 0.018 24.2 12.4 124 332-470 166-305 (447)
373 3v31_A Ankyrin repeat family A 20.7 2.8E+02 0.0096 21.0 10.2 54 12-70 7-63 (167)
374 4a1g_A Mitotic checkpoint seri 20.2 3E+02 0.01 21.2 8.7 46 473-519 83-129 (152)
375 3ljn_A Hypothetical protein; a 20.1 4.6E+02 0.016 23.3 9.6 16 296-311 180-195 (364)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.6e-41 Score=341.60 Aligned_cols=484 Identities=10% Similarity=-0.054 Sum_probs=290.5
Q ss_pred HHhhcCChhhHHHHhccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHcCCCChHHHHHH
Q 046221 14 NYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSI 93 (572)
Q Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 93 (572)
.+.+.|.+..+...++.++.+++..|+.++..+.+.|++++|+.+|++|... .|+..++..++.++.+.|++++|..+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 62 NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 3455677788888888888888999999999999999999999999999854 67888999999999999999999999
Q ss_pred HHHHHHhcCCCCcccCCCCCCceeHHHHHHHHHhCCChHHHHHHHHHHHhC---------------CCCCCHhhHHHHHH
Q 046221 94 HGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGS---------------GLVPNAVTMLTVIR 158 (572)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---------------~~~p~~~~~~~ll~ 158 (572)
++.+.... ++..+++.++.+|.+.|++++|.++|+++... +..++..+|+.++.
T Consensus 140 ~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 208 (597)
T 2xpi_A 140 LTKEDLYN-----------RSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQ 208 (597)
T ss_dssp HHHTCGGG-----------TCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHH
T ss_pred HHHHhccc-----------cchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHH
Confidence 99875432 66789999999999999999999999953221 22334667777777
Q ss_pred HHhccCChHHHHHHHHHHHHhcCCCChhHHhHHHHHHHhCCCHHHHHHH---HhhcCC----CCcccHHHHHHHHHccCC
Q 046221 159 GCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQI---FREMEC----KDVISWTRMMGLFVDFEY 231 (572)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~---~~~~~~----~~~~~~~~li~~~~~~~~ 231 (572)
++.+.|++++|.++|+++.+.+ +.+...+..+...+...+..+.+... +..+.. ....+|+.++..|.+.|+
T Consensus 209 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 287 (597)
T 2xpi_A 209 VYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDE 287 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcch
Confidence 7777777777777777777754 33344444444433322221111110 111111 122334444555666666
Q ss_pred HHHHHHHHHHHHhCCCCCCccchHHHHHHhcccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHHHHHHhc
Q 046221 232 AGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQ 311 (572)
Q Consensus 232 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 311 (572)
+++|.++|+++.+. +++..++..++..+.+.|++++|..+++.+.+.+ +.+..++..++.++.+.|++++|..++++
T Consensus 288 ~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 364 (597)
T 2xpi_A 288 LRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISND 364 (597)
T ss_dssp HHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 66666666666543 3556666666666666666666666666666554 33555566666666666666666666665
Q ss_pred cCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCch
Q 046221 312 ITE---KSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYR 388 (572)
Q Consensus 312 ~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 388 (572)
+.+ .+..+|+.++..|.+.|++++|.++|+++.+. .+.+..++..++..+.+.|++++|.++++.+.+.+ +.+.
T Consensus 365 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 441 (597)
T 2xpi_A 365 LVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM--DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTH 441 (597)
T ss_dssp HHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCS
T ss_pred HHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccch
Confidence 542 23455666666666666666666666666421 22234455555555555555555555555555433 3345
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHHc--CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCCC--HHHHHH
Q 046221 389 SVQNCLISSYSKCGNVDLAYIVFEEM--GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET----GEVPD--SSTYLS 460 (572)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----g~~p~--~~~~~~ 460 (572)
.+++.++.+|.+.|++++|.++|+++ ..+.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..
T Consensus 442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~ 521 (597)
T 2xpi_A 442 LPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWAN 521 (597)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHH
Confidence 55555666666666666666666655 22234555666666666666666666666665553 34554 455566
Q ss_pred HHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC
Q 046221 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 461 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
++.+|.+.|++++|.++++++++.. +.+..+|..++.+|.+.|++++|.+.++++.+
T Consensus 522 l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 522 LGHAYRKLKMYDAAIDALNQGLLLS--TNDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 6666666666666666666555432 33455556666666666666666666665555
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.7e-40 Score=335.50 Aligned_cols=490 Identities=9% Similarity=-0.030 Sum_probs=406.9
Q ss_pred CCCCCcchhhHHHHHhhcCChhhHHHHhccCCC--CChhhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHH
Q 046221 1 PCIDPYNSSKLLSNYFKSGKIKEAENLFDEIPE--KNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVL 78 (572)
Q Consensus 1 p~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 78 (572)
|.+++..|+.++..|.+.|++++|+.+|+++.. |+..++..++.+|.+.|++++|+.+|+.+... +++..+++.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 80 SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp --CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 446778899999999999999999999999864 78889999999999999999999999998654 78889999999
Q ss_pred HHHcCCCChHHHHHHHHHHHHhcCC------CCcccCCCCCCceeHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhh
Q 046221 79 VAAAGLQNLELARSIHGLMVKFGLE------SDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVT 152 (572)
Q Consensus 79 ~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 152 (572)
.++.+.|++++|.++|+++...... ...+.....++..+|+.++.+|.+.|++++|.++|++|.+.+. .+...
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~ 236 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEA 236 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHH
Confidence 9999999999999998842111100 0000000113577999999999999999999999999998642 23445
Q ss_pred HHHHHHHHhccCChHHH--HHH-HHHHHHhcCCCChhHHhHHHHHHHhCCCHHHHHHHHhhcCC--CCcccHHHHHHHHH
Q 046221 153 MLTVIRGCVALGSRALC--ELI-HGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC--KDVISWTRMMGLFV 227 (572)
Q Consensus 153 ~~~ll~~~~~~~~~~~a--~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~ 227 (572)
+..+...+...+..+.+ ..+ +..+...+..+...+|+.++..|.+.|++++|.++|+++.. ++..+|+.++..|.
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Confidence 55555444433322221 111 44444445555667788888999999999999999999987 78999999999999
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCccchHHHHHHhcccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHHHH
Q 046221 228 DFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRS 307 (572)
Q Consensus 228 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 307 (572)
+.|++++|..+|+++.+.+ +.+..++..++.++...|++++|..+++.+.+.. +.+..+++.++..|.+.|++++|.+
T Consensus 317 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 394 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARR 394 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHH
Confidence 9999999999999999765 3477889999999999999999999999999665 6678899999999999999999999
Q ss_pred HHhccCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcC
Q 046221 308 VFNQITE---KSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGF 384 (572)
Q Consensus 308 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 384 (572)
+|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.. ..+.+..++..+..+|.+.|++++|.++++.+.+..
T Consensus 395 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 471 (597)
T 2xpi_A 395 YFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR--LFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF- 471 (597)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--TTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 9998753 4567999999999999999999999999963 244578899999999999999999999999999875
Q ss_pred CCchhHHHHHHHHhhhcCChHHHHHHHHHc-------CCCCC--HhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH
Q 046221 385 PRYRSVQNCLISSYSKCGNVDLAYIVFEEM-------GFLRD--VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS 455 (572)
Q Consensus 385 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~ 455 (572)
+.+..+|+.++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++|.+.++++.+.+ +.+.
T Consensus 472 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~ 550 (597)
T 2xpi_A 472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDA 550 (597)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCh
Confidence 567889999999999999999999999998 44677 7899999999999999999999999999863 3377
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 046221 456 STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLL 501 (572)
Q Consensus 456 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 501 (572)
.+|..+..+|.+.|++++|.++|+++++.. +.+...+..+..+|
T Consensus 551 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 551 NVHTAIALVYLHKKIPGLAITHLHESLAIS--PNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCChHHHHHHHHHH
Confidence 999999999999999999999999998654 34556676666655
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=6.9e-29 Score=241.97 Aligned_cols=191 Identities=12% Similarity=0.047 Sum_probs=147.4
Q ss_pred hHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCcccCCCCCCcee
Q 046221 38 SWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVS 117 (572)
Q Consensus 38 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (572)
.++.+|++|++.|++++|+++|++|.+.|++||..||++||.+|++.+....+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~--------------------------- 80 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES--------------------------- 80 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS---------------------------
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh---------------------------
Confidence 45666666666666666666666666666666666666666666655442211
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHHHHHHh
Q 046221 118 CNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSC 197 (572)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 197 (572)
.+.++++.|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++
T Consensus 81 --------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~ 152 (501)
T 4g26_A 81 --------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR 152 (501)
T ss_dssp --------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred --------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHH
Confidence 123457899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCHHHHHHHHhhcCC----CCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCccchHHHHHHhcc
Q 046221 198 LMDLDAAIQIFREMEC----KDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAI 263 (572)
Q Consensus 198 ~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 263 (572)
.|++++|.++|++|.+ ||..+|+.||.+|++.|+.++|.+++++|.+.|..|+..||+.++..++.
T Consensus 153 ~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 153 KGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 8888888887777754 67777777777777777777777777777777777777777777766654
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.9e-28 Score=238.89 Aligned_cols=185 Identities=11% Similarity=0.149 Sum_probs=173.7
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccc---------cHHHHHHHHHHHHHhcCCCch
Q 046221 318 VSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELA---------ALEICLQLHGIAFEAGFPRYR 388 (572)
Q Consensus 318 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---------~~~~a~~~~~~~~~~~~~~~~ 388 (572)
..++.+|.+|++.|++++|+++|++|. ..|+.||..||+++|.+|++.+ .++.|.++|+.|.+.|+.||.
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~-~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEAR-RNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHH-HHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 357788999999999999999999999 8899999999999999998654 478999999999999999999
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHHc---CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 046221 389 SVQNCLISSYSKCGNVDLAYIVFEEM---GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465 (572)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 465 (572)
.+|+++|.+|++.|++++|.++|++| |+.||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.|+.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred hccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhh
Q 046221 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARA 504 (572)
Q Consensus 466 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 504 (572)
++.|++++|.+++++| ++.|..|+..||+.++..|...
T Consensus 186 ~~~g~~d~A~~ll~~M-r~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRL-RDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHH-HHHTSSBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHH-HHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999 5778999999999999988764
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=8.6e-26 Score=217.28 Aligned_cols=370 Identities=12% Similarity=0.054 Sum_probs=216.4
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHHHHHHhCC
Q 046221 121 IVAGFINNKLFQQAVLLFNFFRGSGLVPN-AVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLM 199 (572)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (572)
+...+.+.|++++|.+.++.+.+. .|+ ...+..+...+...|++++|...++..++.. +.+..+|..+...+.+.|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 345666778888888888777664 333 3445555566677777777777777776654 455666777777777777
Q ss_pred CHHHHHHHHhhcCC--C-CcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcc-chHHHHHHhcccCChHHHHHHHH
Q 046221 200 DLDAAIQIFREMEC--K-DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTV-ALLNLISVNAILGDLKRGKQLHA 275 (572)
Q Consensus 200 ~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~ 275 (572)
++++|...|+++.. | +..+|..+..++...|++++|.+.|+++.+. .|+.. .+..+...+...|++++|...++
T Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 77777777766543 2 3345666666666666666666666666553 23332 33334444445555555555555
Q ss_pred HHHHhCCCCCcchHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhH
Q 046221 276 QVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSIT 355 (572)
Q Consensus 276 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 355 (572)
.+.+.. +.+..++..+. ..+...|++++|...|+++... .+.+...
T Consensus 160 ~al~~~-p~~~~~~~~l~-------------------------------~~~~~~g~~~~A~~~~~~al~~--~p~~~~~ 205 (388)
T 1w3b_A 160 KAIETQ-PNFAVAWSNLG-------------------------------CVFNAQGEIWLAIHHFEKAVTL--DPNFLDA 205 (388)
T ss_dssp HHHHHC-TTCHHHHHHHH-------------------------------HHHHTTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHHHhC-CCCHHHHHHHH-------------------------------HHHHHcCCHHHHHHHHHHHHhc--CCCcHHH
Confidence 555442 22233444444 4444444444444444444321 1122333
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc-CCCC-CHhHHHHHHHHHHhc
Q 046221 356 LVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFLR-DVVSWNTIIYGYGVN 433 (572)
Q Consensus 356 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~ 433 (572)
+..+...+...|++++|...++...... +.+..++..+..++.+.|++++|.+.++++ ...| +..+|..+...+.+.
T Consensus 206 ~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 284 (388)
T 1w3b_A 206 YINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEK 284 (388)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Confidence 4444444444444445544444444432 334555666666677777777777777766 2223 355666777777777
Q ss_pred CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHH
Q 046221 434 GHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL 513 (572)
Q Consensus 434 ~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 513 (572)
|++++|...|+++.+. .+.+..++..+...+...|++++|...++++++.. +.+..++..++.+|.+.|++++|.+.
T Consensus 285 g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~ 361 (388)
T 1w3b_A 285 GSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMH 361 (388)
T ss_dssp SCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC--TTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred CCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777777764 23355667777777777777777777777765422 34455677777777777777777777
Q ss_pred HHhccC-CC-ChHHHHHHHHHH
Q 046221 514 AGKLLE-GM-GPNIWRALLSGC 533 (572)
Q Consensus 514 ~~~~~~-~~-~~~~~~~l~~~~ 533 (572)
++++.+ .| .+..|..+...+
T Consensus 362 ~~~a~~~~p~~~~a~~~lg~~~ 383 (388)
T 1w3b_A 362 YKEAIRISPTFADAYSNMGNTL 383 (388)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHhhCCCCHHHHHhHHHHH
Confidence 777665 33 344455444433
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=9.4e-26 Score=217.01 Aligned_cols=347 Identities=12% Similarity=0.044 Sum_probs=266.0
Q ss_pred CceeHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHHH
Q 046221 114 YLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLD 193 (572)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 193 (572)
+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|++++|...++++++.. +.+...|..+..
T Consensus 32 ~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 109 (388)
T 1w3b_A 32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAA 109 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHH
Confidence 34566777788899999999999999988753 4577899999999999999999999999999864 455678999999
Q ss_pred HHHhCCCHHHHHHHHhhcCC--C-CcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCccchHHHHHHhcccCChHHH
Q 046221 194 MYSCLMDLDAAIQIFREMEC--K-DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRG 270 (572)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 270 (572)
++.+.|++++|...|+++.. | +...+..+...+...|++++|.+.|+++.+.. +-+..++..+...+...|+++.|
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 188 (388)
T 1w3b_A 110 ALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLA 188 (388)
T ss_dssp HHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998865 4 44567788899999999999999999998763 33467888899999999999999
Q ss_pred HHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHHHHHHhccCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 046221 271 KQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE---KSLVSWTAIISGYVQNGCAREALNQFIKMRQEK 347 (572)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 347 (572)
...++.+.+.+ +.+...+..+...+...|++++|...|++..+ .+..++..+...+.+.|++++|+..|+++...
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~- 266 (388)
T 1w3b_A 189 IHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL- 266 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-
Confidence 99999999875 44556677777788888888888877776542 23456677777777777777777777776521
Q ss_pred CCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc--CCCCCHhHHHH
Q 046221 348 TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM--GFLRDVVSWNT 425 (572)
Q Consensus 348 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~ 425 (572)
. +.+...+..+..++.+.|++++|.+.++++ ..+.+..++..
T Consensus 267 -----------------------------------~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 310 (388)
T 1w3b_A 267 -----------------------------------Q-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNN 310 (388)
T ss_dssp -----------------------------------C-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred -----------------------------------C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHH
Confidence 1 223445566667777777777777777776 33345677777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhh
Q 046221 426 IIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARA 504 (572)
Q Consensus 426 l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 504 (572)
+...+.+.|++++|...++++.+. .| +..++..+..++.+.|++++|...|+++++.. +.+...+..+...+.+.
T Consensus 311 l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 311 LANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNMGNTLKEM 386 (388)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHhHHHHHHHc
Confidence 777888888888888888887773 44 45777778888888888888888888876432 33445666666666555
Q ss_pred C
Q 046221 505 G 505 (572)
Q Consensus 505 g 505 (572)
|
T Consensus 387 ~ 387 (388)
T 1w3b_A 387 Q 387 (388)
T ss_dssp C
T ss_pred c
Confidence 4
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.5e-23 Score=209.95 Aligned_cols=399 Identities=11% Similarity=-0.035 Sum_probs=291.3
Q ss_pred eeHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHHHHH
Q 046221 116 VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMY 195 (572)
Q Consensus 116 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 195 (572)
..+......+.+.|++++|+..|+++.+.. |+..+|..+..++...|++++|...++.+++.+ +.+...+..+..++
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 356777888999999999999999999864 799999999999999999999999999999876 56678999999999
Q ss_pred HhCCCHHHHHHHHhhcCC---CCcccHHHHHHHHHccCCHHHHHHHHHHHHhCC-------------------CCCC---
Q 046221 196 SCLMDLDAAIQIFREMEC---KDVISWTRMMGLFVDFEYAGDALKIFREMRKSR-------------------IICD--- 250 (572)
Q Consensus 196 ~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-------------------~~p~--- 250 (572)
.+.|++++|...|+++.. .+......++..+........+.+.+..+...+ ..|+
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 999999999999998764 233444444444433322222222221111110 0010
Q ss_pred ----------------------ccchHHHHHHhc---ccCChHHHHHHHHHHHH-----hCC--------CCCcchHHHH
Q 046221 251 ----------------------TVALLNLISVNA---ILGDLKRGKQLHAQVVL-----GGL--------QSELRLSNSI 292 (572)
Q Consensus 251 ----------------------~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~l 292 (572)
...+......+. +.|+++.|...++.+.+ ... +.+..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 112222222222 37888899998888887 311 2234566777
Q ss_pred HHHHHhcCChhHHHHHHhccCC--CCcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHH
Q 046221 293 IAMYSKCGDLDSSRSVFNQITE--KSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALE 370 (572)
Q Consensus 293 ~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 370 (572)
...+...|++++|...|+++.+ |+...+..+...+...|++++|...++++. ...+.+...+..+...+...|+++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKAL--KLDSNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHH--TTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHh--hcCcCCHHHHHHHHHHHHHhCCHH
Confidence 8888888888888888887752 345677777888888888888888888885 233445667777888888888888
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc--CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 046221 371 ICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM--GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTE 448 (572)
Q Consensus 371 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 448 (572)
.|...++.+.+.. +.+...+..+...+...|++++|...++++ ..+.+...+..+...|...|++++|...++++.+
T Consensus 322 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 400 (514)
T 2gw1_A 322 QAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIE 400 (514)
T ss_dssp HHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888887754 445677788888888888888888888887 2223466778888888888888888888888876
Q ss_pred cCCCCC-------HHHHHHHHHHHhc---cCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhcc
Q 046221 449 TGEVPD-------SSTYLSILNACGH---AGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518 (572)
Q Consensus 449 ~g~~p~-------~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 518 (572)
. .|+ ..++..+...+.. .|++++|...++++++.. +.+...+..+..+|.+.|++++|.+.++++.
T Consensus 401 ~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 401 L--ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD--PRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp H--HHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred h--hhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3 232 2277888888888 888888888888887543 4456677888888888888888888888887
Q ss_pred C-CCChH
Q 046221 519 E-GMGPN 524 (572)
Q Consensus 519 ~-~~~~~ 524 (572)
+ .|+..
T Consensus 477 ~~~~~~~ 483 (514)
T 2gw1_A 477 DLARTME 483 (514)
T ss_dssp HHCSSHH
T ss_pred HhccccH
Confidence 7 55433
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.6e-22 Score=202.44 Aligned_cols=430 Identities=9% Similarity=-0.028 Sum_probs=312.8
Q ss_pred hhhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCcccCCCCCCc
Q 046221 36 VVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYL 115 (572)
Q Consensus 36 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (572)
...|......+.+.|++++|+..|+++.+.+ |+...|..+..++...|++++|...++.+.+..+ .+.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----------~~~ 73 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP----------DYS 73 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS----------CCH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh----------HHH
Confidence 3456667778888889999999998888764 6788888888888888999999998888888765 445
Q ss_pred eeHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHH---
Q 046221 116 VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVL--- 192 (572)
Q Consensus 116 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--- 192 (572)
.+|..+..++...|++++|...|+++.+.+ +++......++..+........+.+.+..+...+..|+......-.
T Consensus 74 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 152 (514)
T 2gw1_A 74 KVLLRRASANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERK 152 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC-----------------------
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHH
Confidence 678888888999999999999998888765 3344444444444443333333333332222221111111111000
Q ss_pred HHHHhCCCHHHHHHHHhhcCC---------C-CcccHHHHHHHHHc---cCCHHHHHHHHHHHHh-----CCCCC-----
Q 046221 193 DMYSCLMDLDAAIQIFREMEC---------K-DVISWTRMMGLFVD---FEYAGDALKIFREMRK-----SRIIC----- 249 (572)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~---------~-~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~-----~~~~p----- 249 (572)
...............+..... | +...+......+.. .|++++|...|+++.+ ....|
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 232 (514)
T 2gw1_A 153 DKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKL 232 (514)
T ss_dssp ----CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHH
T ss_pred hhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcccccc
Confidence 000011111112222222211 1 23444445555554 8999999999999987 32222
Q ss_pred ---CccchHHHHHHhcccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHHHHHHhccCC---CCcchHHHH
Q 046221 250 ---DTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE---KSLVSWTAI 323 (572)
Q Consensus 250 ---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l 323 (572)
+..++..+...+...|+++.|...++.+.+.... ...+..+...+...|++++|...++.+.+ .+...+..+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 310 (514)
T 2gw1_A 233 KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHR 310 (514)
T ss_dssp HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHH
Confidence 2456677788889999999999999999988644 77888899999999999999999998764 355688889
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCC
Q 046221 324 ISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN 403 (572)
Q Consensus 324 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 403 (572)
...+...|++++|...+++.... .+.+...+..+...+...|+++.|...++.+.+.. +.+...+..+...+.+.|+
T Consensus 311 ~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 387 (514)
T 2gw1_A 311 GQMNFILQNYDQAGKDFDKAKEL--DPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKND 387 (514)
T ss_dssp HHHHHHTTCTTHHHHHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCC
Confidence 99999999999999999999733 33356788889999999999999999999998864 5567888899999999999
Q ss_pred hHHHHHHHHHc----CCCCC----HhHHHHHHHHHHh---cCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCCh
Q 046221 404 VDLAYIVFEEM----GFLRD----VVSWNTIIYGYGV---NGHGETALALYHKMTETGEVP-DSSTYLSILNACGHAGLT 471 (572)
Q Consensus 404 ~~~A~~~~~~~----~~~~~----~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~ 471 (572)
+++|...++++ +..++ ...+..+...|.. .|++++|...++++.+. .| +..++..+...+.+.|++
T Consensus 388 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~ 465 (514)
T 2gw1_A 388 FDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL--DPRSEQAKIGLAQMKLQQEDI 465 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCH
Confidence 99999999988 22222 3488899999999 99999999999999985 45 568889999999999999
Q ss_pred HHHHHHHHHhHHhc
Q 046221 472 NDGLVIFNQMIEEN 485 (572)
Q Consensus 472 ~~a~~~~~~~~~~~ 485 (572)
++|...|+++++..
T Consensus 466 ~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 466 DEAITLFEESADLA 479 (514)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998644
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=8.9e-22 Score=198.13 Aligned_cols=426 Identities=10% Similarity=-0.005 Sum_probs=270.4
Q ss_pred eeHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHHHHH
Q 046221 116 VSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMY 195 (572)
Q Consensus 116 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 195 (572)
..|..+...+.+.|++++|++.|+++.+.. +.+...+..+..++...|++++|.+.++.+++.+ +.+...+..+..++
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 467788889999999999999999998864 3477889999999999999999999999999876 56778899999999
Q ss_pred HhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCC--CCCCccchHHHHHHhcccCChHHHHHH
Q 046221 196 SCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSR--IICDTVALLNLISVNAILGDLKRGKQL 273 (572)
Q Consensus 196 ~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~ 273 (572)
...|++++|...|+.+. .++......+..+...+...+|...++++.... ..+........+..+....+.+.+...
T Consensus 104 ~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182 (537)
T ss_dssp HHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence 99999999999997543 222233334455556666788999998886541 011111112222223333333332222
Q ss_pred HHHHHHhCCCCCcc---hHHHHHHHHHh--------cCChhHHHHHHhccCCCCc----------chHHHHHHHHHHcCC
Q 046221 274 HAQVVLGGLQSELR---LSNSIIAMYSK--------CGDLDSSRSVFNQITEKSL----------VSWTAIISGYVQNGC 332 (572)
Q Consensus 274 ~~~~~~~~~~~~~~---~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~----------~~~~~l~~~~~~~~~ 332 (572)
+... ...+.. ....+...+.. .|++++|..+|+++.+.++ .++..+...+...|+
T Consensus 183 ~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 183 VNTS----SNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNN 258 (537)
T ss_dssp SCCC----CSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred Hhhc----cccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhccc
Confidence 1111 011111 11222222111 2466777777776654322 135555566677777
Q ss_pred hHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHH
Q 046221 333 AREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFE 412 (572)
Q Consensus 333 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 412 (572)
+++|...+++.... .|+...+..+...+...|+++.|...++.+.+.. +.+...+..+...+...|++++|...++
T Consensus 259 ~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 259 LLDAQVLLQESINL---HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp HHHHHHHHHHHHHH---CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc---CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 77777777777632 2336666777777777777777777777777654 4456667777777777777777777777
Q ss_pred Hc-C-CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC
Q 046221 413 EM-G-FLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKP 489 (572)
Q Consensus 413 ~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 489 (572)
+. . .+.+...|..+...|...|++++|...++++.+. .| +...+..+...+...|++++|...++++++...-.+
T Consensus 335 ~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 335 KAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp HHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 76 2 2223556777777777777777777777777774 34 346677777777777777777777777765431111
Q ss_pred C----hhHHHHHHHHHHhh----------CChhHHHHHHHhccC--CCChHHHHHHHHHHhhhcCCHHHHHHHHHHHHhC
Q 046221 490 S----QEHYGCVVDLLARA----------GCLSDASGLAGKLLE--GMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKK 553 (572)
Q Consensus 490 ~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~g~~~~A~~~~~~m~~~ 553 (572)
+ ...+..+..++.+. |++++|...++++.+ +.+...|..+...+... |++++|.+.+++..+.
T Consensus 413 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQM-EKIDEAIELFEDSAIL 491 (537)
T ss_dssp SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHh
Confidence 1 11233445566666 777777777777766 33455666666666655 7777777777777665
Q ss_pred CC
Q 046221 554 GI 555 (572)
Q Consensus 554 ~~ 555 (572)
..
T Consensus 492 ~~ 493 (537)
T 3fp2_A 492 AR 493 (537)
T ss_dssp C-
T ss_pred CC
Confidence 43
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=1.4e-21 Score=196.71 Aligned_cols=424 Identities=8% Similarity=-0.020 Sum_probs=247.1
Q ss_pred ChhhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCcccCCCCCC
Q 046221 35 NVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPY 114 (572)
Q Consensus 35 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 114 (572)
....|..+...+.+.|++++|+..|+++.+.. +.+...+..+..++.+.|++++|...++.+.+..+ .+
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----------~~ 92 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP----------DH 92 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT----------TC
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----------ch
Confidence 34677888889999999999999999998875 55677888889999999999999999999998875 45
Q ss_pred ceeHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhc--CCCChhHHhHHH
Q 046221 115 LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLG--LILDVSVNNSVL 192 (572)
Q Consensus 115 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~ 192 (572)
...+..+...+...|++++|.+.|+.+. . .|+.. ...+..+...+....+...++.++... ..+........+
T Consensus 93 ~~~~~~la~~~~~~g~~~~A~~~~~~~~-~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~ 167 (537)
T 3fp2_A 93 SKALLRRASANESLGNFTDAMFDLSVLS-L--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSL 167 (537)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHh-c--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHH
Confidence 6788899999999999999999997442 2 23222 122334444455677788887775531 111111223334
Q ss_pred HHHHhCCCHHHHHHHHhhcCCCCcc---cHHHHHHHHHcc--------CCHHHHHHHHHHHHhCCCCCCc--------cc
Q 046221 193 DMYSCLMDLDAAIQIFREMECKDVI---SWTRMMGLFVDF--------EYAGDALKIFREMRKSRIICDT--------VA 253 (572)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~--------~~~~~a~~~~~~m~~~~~~p~~--------~~ 253 (572)
..+....+.+.+...+......+.. ....+...+... +++++|..+++++.+. .|+. .+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~ 245 (537)
T 3fp2_A 168 ASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALA 245 (537)
T ss_dssp HHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHH
T ss_pred HHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHH
Confidence 4555667777777777666654433 333333333322 4678888888888765 3432 13
Q ss_pred hHHHHHHhcccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHHHHHHhccCC---CCcchHHHHHHHHHHc
Q 046221 254 LLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE---KSLVSWTAIISGYVQN 330 (572)
Q Consensus 254 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 330 (572)
+..+...+...|+++.|...++.+.+.. |+...+..+...+...|++++|...|+++.+ .+..+|..+...+...
T Consensus 246 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 323 (537)
T 3fp2_A 246 LCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFIL 323 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc
Confidence 4444555666677777777777777654 3355566666666677777777776666542 2345566666666666
Q ss_pred CChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHH
Q 046221 331 GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIV 410 (572)
Q Consensus 331 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 410 (572)
|++++|...+++..... +.+...+..+...+...|+++.|...++.+.+.. +.+...+..+...+...|++++|...
T Consensus 324 ~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 400 (537)
T 3fp2_A 324 QDYKNAKEDFQKAQSLN--PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQ 400 (537)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 66677766666665222 1223344445555555555555555555555442 33344444555555555555555555
Q ss_pred HHHc----C----CCCCHhHHHHHHHHHHhc----------CChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCCh
Q 046221 411 FEEM----G----FLRDVVSWNTIIYGYGVN----------GHGETALALYHKMTETGEVP-DSSTYLSILNACGHAGLT 471 (572)
Q Consensus 411 ~~~~----~----~~~~~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~ 471 (572)
++++ + .......+..+...+... |++++|...|+++.+. .| +..++..+...+.+.|++
T Consensus 401 ~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~~ 478 (537)
T 3fp2_A 401 YDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIGLAQLKLQMEKI 478 (537)
T ss_dssp HHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccH
Confidence 5544 0 000111122223334444 5555555555555442 22 234444555555555555
Q ss_pred HHHHHHHHHhHH
Q 046221 472 NDGLVIFNQMIE 483 (572)
Q Consensus 472 ~~a~~~~~~~~~ 483 (572)
++|...|+++++
T Consensus 479 ~~A~~~~~~al~ 490 (537)
T 3fp2_A 479 DEAIELFEDSAI 490 (537)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555543
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=4.1e-21 Score=188.65 Aligned_cols=310 Identities=12% Similarity=0.024 Sum_probs=176.6
Q ss_pred CCChhHHhHHHHHHHhCCCHHHHHHHHhhcCC---CCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCccchHHHH
Q 046221 182 ILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC---KDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLI 258 (572)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 258 (572)
+.+...+..+...+.+.|++++|..+|+++.. .+..+|..+..++...|++++|...|+++.+.+ +.+...+..+.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 44556667777777777777777777776653 345666677777777777777777777776653 22344555666
Q ss_pred HHhcccCChHHHHHHHHHHHHhCCCCCc---chHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHHHHcCChHH
Q 046221 259 SVNAILGDLKRGKQLHAQVVLGGLQSEL---RLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCARE 335 (572)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 335 (572)
.++...|++++|...++.+.+.. +.+. ..+..++..+... .+..+...+...|++++
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~ 161 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQ-------------------RLRSQALNAFGSGDYTA 161 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHH-------------------HHHHHHHHHHHcCCHHH
Confidence 66666666666666666665543 2222 3333332221000 01112233455555555
Q ss_pred HHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc-
Q 046221 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM- 414 (572)
Q Consensus 336 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 414 (572)
|+..|+++... .+.+...+..+...+...|+++.|...++.+.+.. +.+...+..+..+|...|++++|...|+++
T Consensus 162 A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 162 AIAFLDKILEV--CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555555421 22344455555555555555555555555555443 344555566666666666666666666665
Q ss_pred CCCCC-HhHHHHH------------HHHHHhcCChHHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHhccCChHHHHH
Q 046221 415 GFLRD-VVSWNTI------------IYGYGVNGHGETALALYHKMTETGEVPD-----SSTYLSILNACGHAGLTNDGLV 476 (572)
Q Consensus 415 ~~~~~-~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~g~~p~-----~~~~~~l~~~~~~~g~~~~a~~ 476 (572)
...|+ ...+..+ ...|.+.|++++|...|+++.+ +.|+ ...+..+..++.+.|++++|+.
T Consensus 239 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 316 (450)
T 2y4t_A 239 KLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEAIR 316 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 22232 2233332 5566666667777776666666 3343 2355666666666677777777
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC
Q 046221 477 IFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
.++++++.. +.+...+..++.+|...|++++|.+.++++.+
T Consensus 317 ~~~~a~~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 317 VCSEVLQME--PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhC--cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 666665432 33455666666666666777777777666655
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=5.6e-21 Score=187.67 Aligned_cols=319 Identities=10% Similarity=-0.020 Sum_probs=199.5
Q ss_pred CCceeHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHH
Q 046221 113 PYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVL 192 (572)
Q Consensus 113 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 192 (572)
.+...|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++.+++.+ +.+..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 345577888888888899999999998887752 3467778888888888888888888888888875 44567777788
Q ss_pred HHHHhCCCHHHHHHHHhhcCCCCc------ccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCccchHHHHHHhcccCC
Q 046221 193 DMYSCLMDLDAAIQIFREMECKDV------ISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGD 266 (572)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 266 (572)
.+|.+.|++++|...|+++...++ ..+..++..+...+ +..+...+...|+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------------~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR-----------------------LRSQALNAFGSGD 158 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHcCC
Confidence 888888888888888877765222 34444433311111 1112223444566
Q ss_pred hHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHHHHHHhccCC---CCcchHHHHHHHHHHcCChHHHHHHHHHH
Q 046221 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE---KSLVSWTAIISGYVQNGCAREALNQFIKM 343 (572)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 343 (572)
++.|...++.+.+.. +.+..++..+..+|.+.|++++|...|+++.+ .+..+|..+...|...|++++|+..|+++
T Consensus 159 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 159 YTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666666666543 34555666677777777777777777776652 34567777777777778888888887777
Q ss_pred HhcCCCCCCHhHHHHH------------HHHhcccccHHHHHHHHHHHHHhcCCCc----hhHHHHHHHHhhhcCChHHH
Q 046221 344 RQEKTDSVDSITLVSI------------LTASGELAALEICLQLHGIAFEAGFPRY----RSVQNCLISSYSKCGNVDLA 407 (572)
Q Consensus 344 ~~~~~~~~~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A 407 (572)
....+ .+...+..+ ...+...|++++|...++.+.+... .+ ...+..+..++.+.|++++|
T Consensus 238 ~~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~l~~~~~~~g~~~~A 314 (450)
T 2y4t_A 238 LKLDQ--DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP-SIAEYTVRSKERICHCFSKDEKPVEA 314 (450)
T ss_dssp HHHCT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-SSHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHhCC--ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHHHHCCCHHHH
Confidence 63221 122222222 4455555666666666655555321 11 23455566666666666666
Q ss_pred HHHHHHc-CCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-HHHHHHHH
Q 046221 408 YIVFEEM-GFLR-DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD-SSTYLSIL 462 (572)
Q Consensus 408 ~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~l~ 462 (572)
...++++ ...| +...|..+..+|...|++++|...++++.+ +.|+ ...+..+.
T Consensus 315 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 315 IRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 6666665 2222 455666666666666666666666666665 3443 34444443
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.84 E-value=6.2e-18 Score=160.42 Aligned_cols=305 Identities=11% Similarity=0.005 Sum_probs=185.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCccchHHHHHHhcccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHh
Q 046221 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSK 298 (572)
Q Consensus 219 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 298 (572)
+..+...+...|++++|...|+++.+.. +.+..++..+..++...|+++.|...++.+.+.. +.+...+..+...+..
T Consensus 6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 6 HLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLK 83 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHH
Confidence 3334444444444444444444444321 1223334444444444444444444444444432 2233344444555555
Q ss_pred cCChhHHHHHHhccCCCCc------chHH------------HHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHH
Q 046221 299 CGDLDSSRSVFNQITEKSL------VSWT------------AIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSIL 360 (572)
Q Consensus 299 ~~~~~~a~~~~~~~~~~~~------~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll 360 (572)
.|++++|...|++..+.++ ..+. .+...+...|++++|+..++++.+. .+.+...+..+.
T Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~ 161 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV--CVWDAELRELRA 161 (359)
T ss_dssp HTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCchHHHHHHH
Confidence 5555555555554433211 1122 2245667777788888887777533 234556666777
Q ss_pred HHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc-CCCCC-HhHHH------------HH
Q 046221 361 TASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFLRD-VVSWN------------TI 426 (572)
Q Consensus 361 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~------------~l 426 (572)
..+...|+++.|...++.+.+.. +.+...+..+...+...|++++|...+++. ...|+ ...+. .+
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIES 240 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777776653 456677777788888888888888888777 22232 23222 23
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCH-----HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 046221 427 IYGYGVNGHGETALALYHKMTETGEVPDS-----STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLL 501 (572)
Q Consensus 427 ~~~~~~~~~~~~A~~~~~~~~~~g~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 501 (572)
...+.+.|++++|...++++.+. .|+. ..+..+..++...|++++|...++++++.. +.+...+..+..++
T Consensus 241 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~ 316 (359)
T 3ieg_A 241 AEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME--PDNVNALKDRAEAY 316 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHH
Confidence 55678888899999988888874 3432 234456778888889999999998887643 44677888888888
Q ss_pred HhhCChhHHHHHHHhccC-CCC-hHHHHHHHHH
Q 046221 502 ARAGCLSDASGLAGKLLE-GMG-PNIWRALLSG 532 (572)
Q Consensus 502 ~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~ 532 (572)
.+.|++++|.+.++++.+ .|+ +..+..+...
T Consensus 317 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 349 (359)
T 3ieg_A 317 LIEEMYDEAIQDYEAAQEHNENDQQIREGLEKA 349 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 889999999999888877 444 4444444433
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=1.4e-17 Score=156.10 Aligned_cols=283 Identities=12% Similarity=0.017 Sum_probs=184.3
Q ss_pred chHHHHHHhcccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHHHHHHhccCC---CCcchHHHHHHHHHH
Q 046221 253 ALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE---KSLVSWTAIISGYVQ 329 (572)
Q Consensus 253 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~ 329 (572)
.+..+...+...|+++.|..+++.+.+.. +.+...+..++..+...|++++|...++++.+ .+...|..+...+..
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 102 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLM 102 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 33333444444444444444444444332 22223333344444445555555555444432 233445555555555
Q ss_pred cC-ChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHH
Q 046221 330 NG-CAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAY 408 (572)
Q Consensus 330 ~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 408 (572)
.| ++++|...|++... ..+.+...+..+...+...|+++.|...++.+.+.. +.+...+..+...+...|++++|.
T Consensus 103 ~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 179 (330)
T 3hym_B 103 VGHKNEHARRYLSKATT--LEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAE 179 (330)
T ss_dssp SCSCHHHHHHHHHHHHT--TCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhhHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHH
Confidence 55 56666666665541 122234455555566666666666666666665554 334556666888899999999999
Q ss_pred HHHHHc-CCC-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCC--------CCCHHHHHHHHHHHhccCChHHHHHHH
Q 046221 409 IVFEEM-GFL-RDVVSWNTIIYGYGVNGHGETALALYHKMTETGE--------VPDSSTYLSILNACGHAGLTNDGLVIF 478 (572)
Q Consensus 409 ~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~--------~p~~~~~~~l~~~~~~~g~~~~a~~~~ 478 (572)
..+++. ... .+...+..+...|...|++++|...++++.+..- ..+..++..+..++...|++++|...+
T Consensus 180 ~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 259 (330)
T 3hym_B 180 RFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYH 259 (330)
T ss_dssp HHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999988 333 4578888899999999999999999999887411 223478889999999999999999999
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC-CC-ChHHHHHHHHHHhhhcCCHH
Q 046221 479 NQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE-GM-GPNIWRALLSGCVLHVGRFQ 541 (572)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~g~~~ 541 (572)
+++++.. +.+...+..+..++.+.|++++|.+.++++.+ .| ++..+..+...+....|+.+
T Consensus 260 ~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 260 RQALVLI--PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHS--TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHhhC--ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9998654 45677899999999999999999999999988 44 55566666666644436543
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.83 E-value=1.2e-17 Score=158.45 Aligned_cols=295 Identities=10% Similarity=0.049 Sum_probs=242.3
Q ss_pred cchHHHHHHhcccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHHHHHHhccCC---CCcchHHHHHHHHH
Q 046221 252 VALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE---KSLVSWTAIISGYV 328 (572)
Q Consensus 252 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~ 328 (572)
..+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...|+++.+ .+...+..+...+.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 456667778889999999999999999876 45677888999999999999999999998764 35578889999999
Q ss_pred HcCChHHHHHHHHHHHhcCCCC---CCHhHHHHH------------HHHhcccccHHHHHHHHHHHHHhcCCCchhHHHH
Q 046221 329 QNGCAREALNQFIKMRQEKTDS---VDSITLVSI------------LTASGELAALEICLQLHGIAFEAGFPRYRSVQNC 393 (572)
Q Consensus 329 ~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 393 (572)
..|++++|...|++.. .. .+ .+...+..+ ...+...|+++.|...++.+.+.. +.+...+..
T Consensus 83 ~~~~~~~A~~~~~~~~-~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 159 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVL-KS-NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELREL 159 (359)
T ss_dssp HHTCHHHHHHHHHHHH-TS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HcCChHHHHHHHHHHH-hc-CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 9999999999999997 22 22 233344333 477889999999999999998875 567788899
Q ss_pred HHHHhhhcCChHHHHHHHHHc-C-CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-HHHHH-----------
Q 046221 394 LISSYSKCGNVDLAYIVFEEM-G-FLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD-SSTYL----------- 459 (572)
Q Consensus 394 l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~----------- 459 (572)
+..++...|++++|...+++. . .+.+...+..+...|...|++++|...+++..+. .|+ ...+.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHH
Confidence 999999999999999999998 3 3346788999999999999999999999999984 454 34333
Q ss_pred -HHHHHHhccCChHHHHHHHHHhHHhcCCCCCh----hHHHHHHHHHHhhCChhHHHHHHHhccC-CC-ChHHHHHHHHH
Q 046221 460 -SILNACGHAGLTNDGLVIFNQMIEENKVKPSQ----EHYGCVVDLLARAGCLSDASGLAGKLLE-GM-GPNIWRALLSG 532 (572)
Q Consensus 460 -~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~ 532 (572)
.+...+.+.|++++|...++++++.. +.+. ..+..+..++.+.|++++|.+.++++.+ .| ++..|..+...
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 315 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEA 315 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 23667899999999999999998654 2223 2355678899999999999999999987 44 67778888888
Q ss_pred HhhhcCCHHHHHHHHHHHHhCCC
Q 046221 533 CVLHVGRFQDAEALRSGSQKKGI 555 (572)
Q Consensus 533 ~~~~~g~~~~A~~~~~~m~~~~~ 555 (572)
+... |++++|...+++..+..+
T Consensus 316 ~~~~-g~~~~A~~~~~~a~~~~p 337 (359)
T 3ieg_A 316 YLIE-EMYDEAIQDYEAAQEHNE 337 (359)
T ss_dssp HHHT-TCHHHHHHHHHHHHTTCT
T ss_pred HHHc-CCHHHHHHHHHHHHhcCC
Confidence 8777 999999999999987654
No 16
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.82 E-value=1.8e-15 Score=156.65 Aligned_cols=369 Identities=11% Similarity=0.016 Sum_probs=193.3
Q ss_pred hhHHHHHhhcCChhhHHHHhccCCC-C-----ChhhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHc
Q 046221 9 SKLLSNYFKSGKIKEAENLFDEIPE-K-----NVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAA 82 (572)
Q Consensus 9 ~~l~~~~~~~~~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 82 (572)
...+++|...|.+.+|+++++++.- + +....+.++..-.+. +..+..+..+..-.. ....+...+.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eIA~Iai 1060 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDIANIAI 1060 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHHHHHHH
Confidence 4467888888999999999988763 2 234555555544444 334444444433211 1222445555
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCcccCCCCCCceeHHHHHHHHH-hCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHh
Q 046221 83 GLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFI-NNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161 (572)
Q Consensus 83 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 161 (572)
..|.+++|..+|++... +...+..+. ..+++++|.++.++. -+..+|..+..++.
T Consensus 1061 ~lglyEEAf~IYkKa~~------------------~~~A~~VLie~i~nldrAiE~Aerv------n~p~vWsqLAKAql 1116 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFDV------------------NTSAVQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQL 1116 (1630)
T ss_pred hCCCHHHHHHHHHHcCC------------------HHHHHHHHHHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHH
Confidence 66777777766665421 111112222 445566666665543 13455556666666
Q ss_pred ccCChHHHHHHHHHHHHhcCCCChhHHhHHHHHHHhCCCHHHHHHHHhhcCC--CCcccHHHHHHHHHccCCHHHHHHHH
Q 046221 162 ALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC--KDVISWTRMMGLFVDFEYAGDALKIF 239 (572)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~ 239 (572)
..|++++|...|.. ..|...|..++.++.+.|++++|.+.+..... +++...+.++.+|.+.+++++...+.
T Consensus 1117 ~~G~~kEAIdsYiK------AdD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI 1190 (1630)
T 1xi4_A 1117 QKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI 1190 (1630)
T ss_pred hCCCHHHHHHHHHh------cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH
Confidence 66666666666543 13455555566666666666666666654432 23333334566666665555433222
Q ss_pred HHHHhCCCCCCccchHHHHHHhcccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHHHHHHhccCCCCcch
Q 046221 240 REMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVS 319 (572)
Q Consensus 240 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 319 (572)
+ .++...+..+...|...|+++.|..+|... ..|..+..+|.+.|++++|.+.+++. .+..+
T Consensus 1191 ----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~a 1252 (1630)
T 1xi4_A 1191 ----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRT 1252 (1630)
T ss_pred ----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHH
Confidence 1 233444445555666666666666666653 24555666666666666666666554 33355
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhh
Q 046221 320 WTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399 (572)
Q Consensus 320 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 399 (572)
|..+-.+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++...... +-....|+-+...|+
T Consensus 1253 Wkev~~acve~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLya 1325 (1630)
T 1xi4_A 1253 WKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS 1325 (1630)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHH
Confidence 555555555555555555444322 2334444455555666666666666665444333 233334444444443
Q ss_pred h--cCChHHHHHHHHHc-CCCC------CHhHHHHHHHHHHhcCChHHHH
Q 046221 400 K--CGNVDLAYIVFEEM-GFLR------DVVSWNTIIYGYGVNGHGETAL 440 (572)
Q Consensus 400 ~--~g~~~~A~~~~~~~-~~~~------~~~~~~~l~~~~~~~~~~~~A~ 440 (572)
+ .+++.++.+.|..- .++| +...|..++..|.+.|+++.|.
T Consensus 1326 Ky~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1326 KFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred hCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 3 33444444444433 3322 3445555556666666666555
No 17
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.82 E-value=5.5e-15 Score=153.14 Aligned_cols=408 Identities=8% Similarity=0.007 Sum_probs=272.8
Q ss_pred CcchHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCcccCCCCCCceeHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCC
Q 046221 70 NSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPN 149 (572)
Q Consensus 70 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 149 (572)
++.-.....++|...|.+.+|.+++++..-.+. .| ..+....+.++....+. +..+..+..+++...
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s---~f----s~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----- 1050 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNS---VF----SEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----- 1050 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCC---cc----cccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-----
Confidence 334455667777788888888888888773321 12 12344566666666666 455565655555421
Q ss_pred HhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHcc
Q 046221 150 AVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDF 229 (572)
Q Consensus 150 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~ 229 (572)
....+...+...|.+++|..+|++.. ......+.++. ..+++++|.++.++. .+..+|..+..++...
T Consensus 1051 --d~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~ 1118 (1630)
T 1xi4_A 1051 --DAPDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC--NEPAVWSQLAKAQLQK 1118 (1630)
T ss_pred --cHHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhC
Confidence 12335666777888888888888752 11122223322 567788888888876 3466788888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCccchHHHHHHhcccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHHHHHH
Q 046221 230 EYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVF 309 (572)
Q Consensus 230 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 309 (572)
|++++|.+.|.+. -|...|..++.++.+.|++++|.+.+....+.. +++...+.++.+|++.+++++...+.
T Consensus 1119 G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI 1190 (1630)
T 1xi4_A 1119 GMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI 1190 (1630)
T ss_pred CCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH
Confidence 8888888888553 466677788888888888888888888777654 33334445888888888888644443
Q ss_pred hccCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchh
Q 046221 310 NQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRS 389 (572)
Q Consensus 310 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 389 (572)
..++...|..+...|...|++++|..+|.... .|..+...+.+.|+++.|.+.+++. .+..
T Consensus 1191 ---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~----------ny~rLA~tLvkLge~q~AIEaarKA------~n~~ 1251 (1630)
T 1xi4_A 1191 ---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS----------NFGRLASTLVHLGEYQAAVDGARKA------NSTR 1251 (1630)
T ss_pred ---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh----------HHHHHHHHHHHhCCHHHHHHHHHHh------CCHH
Confidence 34455667778888888888888888888752 7888888888888888888888765 4557
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHhc-
Q 046221 390 VQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS-STYLSILNACGH- 467 (572)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~- 467 (572)
+|..+..+|...|+++.|...... +..++..+..++..|.+.|.+++|+.+++..+. +.|.. ..|+-+...+++
T Consensus 1252 aWkev~~acve~~Ef~LA~~cgl~--Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1252 TWKEVCFACVDGKEFRLAQMCGLH--IVVHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKF 1327 (1630)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHh--hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHHHHHHhC
Confidence 777788888888888888876664 334555667888888888888888888877775 44433 455555555543
Q ss_pred -cCChHHHHHHHHHhHHhcCCCC------ChhHHHHHHHHHHhhCChhHHHHHHHh-------------ccC-CCChHHH
Q 046221 468 -AGLTNDGLVIFNQMIEENKVKP------SQEHYGCVVDLLARAGCLSDASGLAGK-------------LLE-GMGPNIW 526 (572)
Q Consensus 468 -~g~~~~a~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~-------------~~~-~~~~~~~ 526 (572)
-++..+++++|.. +.+++| +...|.-++..|.+.|+++.|....-+ ... ..++..|
T Consensus 1328 ~peklmEhlk~f~~---rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~ely 1404 (1630)
T 1xi4_A 1328 KPQKMREHLELFWS---RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELY 1404 (1630)
T ss_pred CHHHHHHHHHHHHH---hcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHH
Confidence 3445555555542 223333 455788888888888888888732222 111 4456666
Q ss_pred HHHHHHHhhh
Q 046221 527 RALLSGCVLH 536 (572)
Q Consensus 527 ~~l~~~~~~~ 536 (572)
...+.-|...
T Consensus 1405 ykai~Fyl~~ 1414 (1630)
T 1xi4_A 1405 YRAIQFYLEF 1414 (1630)
T ss_pred HHHHHHHHhh
Confidence 6666665544
No 18
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=9.6e-19 Score=162.21 Aligned_cols=382 Identities=10% Similarity=0.010 Sum_probs=173.2
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCcccCCCCCCceeHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc
Q 046221 83 GLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA 162 (572)
Q Consensus 83 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 162 (572)
+.|++++|.++++++ ++..+|..|+.++.+.|++++|++.|.+ .+|..+|..++.++..
T Consensus 15 ~~~~ld~A~~fae~~---------------~~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~ 73 (449)
T 1b89_A 15 HIGNLDRAYEFAERC---------------NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANT 73 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC---------------CChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHh
Confidence 567788898887777 1224899999999999999999999965 3578899999999999
Q ss_pred cCChHHHHHHHHHHHHhcCCCChhHHhHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHccCCHHHHHHHHHHH
Q 046221 163 LGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREM 242 (572)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 242 (572)
.|++++|..+++...+. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|.+++|..+|..+
T Consensus 74 ~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a 148 (449)
T 1b89_A 74 SGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV 148 (449)
T ss_dssp -------------------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 99999999988877764 55678899999999999999999988864 77789999999999999999999999976
Q ss_pred HhCCCCCCccchHHHHHHhcccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHH
Q 046221 243 RKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTA 322 (572)
Q Consensus 243 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 322 (572)
..|..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. ..+.....
T Consensus 149 ---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~ 212 (449)
T 1b89_A 149 ---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEE 212 (449)
T ss_dssp ---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHH
T ss_pred ---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHH
Confidence 48999999999999999999999988 378899999999999999999988777655 34444556
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCC------chhHHHHHHH
Q 046221 323 IISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPR------YRSVQNCLIS 396 (572)
Q Consensus 323 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~ 396 (572)
++..|.+.|++++|..+++.............|...++-+-.+.++..+..+.|.. +.+++| +...|..++.
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999863332222333444444444555666666665531 122222 4567788888
Q ss_pred HhhhcCChHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-----------
Q 046221 397 SYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC----------- 465 (572)
Q Consensus 397 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~----------- 465 (572)
.|.+.++++.|...+-+-+ |+..--..+.....+-.+.+--.+...=-++ -.|. .++-|+.++
T Consensus 291 ly~~~~e~d~A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~--~~p~--~l~~ll~~l~~~ld~~r~v~ 364 (449)
T 1b89_A 291 LYDKYEEYDNAIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLE--FKPL--LLNDLLMVLSPRLDHTRAVN 364 (449)
T ss_dssp HHHHTTCHHHHHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH--HCGG--GHHHHHHHHGGGCCHHHHHH
T ss_pred HHHhhchHHHHHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHh--cCHH--HHHHHHHHHHhccCcHHHHH
Confidence 8889999998877554431 2211112222222333333222221111111 1222 133333343
Q ss_pred --hccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhcc
Q 046221 466 --GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518 (572)
Q Consensus 466 --~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 518 (572)
.+.|...-+..++..+. .. -+..+-.++-+.|....|++.-...++..-
T Consensus 365 ~~~~~~~l~l~~~yl~~v~-~~---n~~~vnealn~l~ieeed~~~lr~si~~~~ 415 (449)
T 1b89_A 365 YFSKVKQLPLVKPYLRSVQ-NH---NNKSVNESLNNLFITEEDYQALRTSIDAYD 415 (449)
T ss_dssp HHHHTTCTTTTHHHHHHHH-TT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHCC
T ss_pred HHHHcCCcHHHHHHHHHHH-Hh---hHHHHHHHHHHHHHhhhhHHHHHHHHHHhc
Confidence 44444444444444442 11 233445566677778888777766666543
No 19
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=5e-18 Score=157.46 Aligned_cols=401 Identities=14% Similarity=0.092 Sum_probs=205.8
Q ss_pred hhcCChhhHHHHhccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHcCCCChHHHHHHHH
Q 046221 16 FKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHG 95 (572)
Q Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 95 (572)
.+.|++++|.++++++..| .+|..+..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|...++
T Consensus 14 ~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3668899999999999665 5999999999999999999999975 3677899999999999999999999888
Q ss_pred HHHHhcCCCCcccCCCCCCceeHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHH
Q 046221 96 LMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGL 175 (572)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 175 (572)
...+.. ++..+.+.++.+|.+.|++.++.++++ .|+..+|..+...|...|.+++|...|..
T Consensus 86 ~ark~~-----------~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~ 147 (449)
T 1b89_A 86 MARKKA-----------RESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNN 147 (449)
T ss_dssp ----------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHH
T ss_pred HHHHhC-----------ccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 776642 446688999999999999999988875 37778999999999999999999999997
Q ss_pred HHHhcCCCChhHHhHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCccchH
Q 046221 176 TIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALL 255 (572)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 255 (572)
+ ..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+ ...+....
T Consensus 148 a---------~n~~~LA~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~ 211 (449)
T 1b89_A 148 V---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELE 211 (449)
T ss_dssp T---------TCHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHH
T ss_pred h---------hhHHHHHHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHH
Confidence 6 57999999999999999999999999 48899999999999999999996655442 23333455
Q ss_pred HHHHHhcccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhc--CChhHHHHHHhccCC--------CCcchHHHHHH
Q 046221 256 NLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKC--GDLDSSRSVFNQITE--------KSLVSWTAIIS 325 (572)
Q Consensus 256 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~--------~~~~~~~~l~~ 325 (572)
.++..|.+.|.++++..+++..+... +....+|+-+.-+|++- +++.+..+.|..-.. .+...|..+..
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 78889999999999999999988655 55566777777777764 455666666654432 24578999999
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChH
Q 046221 326 GYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVD 405 (572)
Q Consensus 326 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 405 (572)
.|...++++.|... |.+.....-+...|.-++.-.....-+-+|..++- +.. +...+-|+.++...=+..
T Consensus 291 ly~~~~e~d~A~~t---m~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl-----~~~--p~~l~~ll~~l~~~ld~~ 360 (449)
T 1b89_A 291 LYDKYEEYDNAIIT---MMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL-----EFK--PLLLNDLLMVLSPRLDHT 360 (449)
T ss_dssp HHHHTTCHHHHHHH---HHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH-----HHC--GGGHHHHHHHHGGGCCHH
T ss_pred HHHhhchHHHHHHH---HHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH-----hcC--HHHHHHHHHHHHhccCcH
Confidence 99999999998864 33243455566666666665555555555555543 112 334677888888888888
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHhccCChHHHHH
Q 046221 406 LAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKM-TETGEVPDSSTYLSILNACGHAGLTNDGLV 476 (572)
Q Consensus 406 ~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 476 (572)
.+.++|++.+.-|-+..|-.-+ +..+....-+.+.++ ++ .-|..+...-|.+|-.-....-|.+
T Consensus 361 r~v~~~~~~~~l~l~~~yl~~v----~~~n~~~vnealn~l~ie---eed~~~lr~si~~~~nfd~~~l~~~ 425 (449)
T 1b89_A 361 RAVNYFSKVKQLPLVKPYLRSV----QNHNNKSVNESLNNLFIT---EEDYQALRTSIDAYDNFDNISLAQR 425 (449)
T ss_dssp HHHHHHHHTTCTTTTHHHHHHH----HTTCCHHHHHHHHHHHHH---TTCHHHHHHHHHHCCCSCHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHH----HHhhHHHHHHHHHHHHHh---hhhHHHHHHHHHHhcCcCHHHHHHH
Confidence 8888888886556655553221 123333443444443 33 3466777777777766665555544
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.79 E-value=2.8e-17 Score=156.60 Aligned_cols=258 Identities=14% Similarity=0.083 Sum_probs=121.8
Q ss_pred HHHHHhcccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHHHHHHhccCC---CCcchHHHHHHHHHHcCC
Q 046221 256 NLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE---KSLVSWTAIISGYVQNGC 332 (572)
Q Consensus 256 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 332 (572)
.+...+...|++++|...++.+.+.. +.+...+..+..++.+.|++++|...|+++.+ .+..++..+...+...|+
T Consensus 69 ~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~ 147 (368)
T 1fch_A 69 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESL 147 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Confidence 33333334444444444444443332 22333444444445555555555555544331 233455555556666666
Q ss_pred hHHHHHHHHHHHhcCCCCCCHhHHH-------------HHHHHhcccccHHHHHHHHHHHHHhcCCC-chhHHHHHHHHh
Q 046221 333 AREALNQFIKMRQEKTDSVDSITLV-------------SILTASGELAALEICLQLHGIAFEAGFPR-YRSVQNCLISSY 398 (572)
Q Consensus 333 ~~~a~~~~~~~~~~~~~~~~~~~~~-------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~ 398 (572)
+++|...++++....+..+...... ..+..+...|+++.|...++.+.+..... +..++..+..++
T Consensus 148 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~ 227 (368)
T 1fch_A 148 QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLF 227 (368)
T ss_dssp HHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHH
Confidence 6666666666552221111111100 01111224555555555555555443111 344555555555
Q ss_pred hhcCChHHHHHHHHHc-C-CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChHHHH
Q 046221 399 SKCGNVDLAYIVFEEM-G-FLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNACGHAGLTNDGL 475 (572)
Q Consensus 399 ~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~ 475 (572)
.+.|++++|...++++ . .+.+...|..+...|...|++++|+..|+++.+. .| +..++..+..+|.+.|++++|.
T Consensus 228 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 305 (368)
T 1fch_A 228 NLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAV 305 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 5555565555555555 1 2123445555555555556666666655555553 23 3455555555555556666666
Q ss_pred HHHHHhHHhcCCC---------CChhHHHHHHHHHHhhCChhHHHHHHHh
Q 046221 476 VIFNQMIEENKVK---------PSQEHYGCVVDLLARAGCLSDASGLAGK 516 (572)
Q Consensus 476 ~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 516 (572)
..|+++++...-. ....+|..+..+|.+.|++++|..++++
T Consensus 306 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 306 EHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 5555554332100 0034555555555555555555555543
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.79 E-value=3.2e-16 Score=156.70 Aligned_cols=406 Identities=8% Similarity=0.008 Sum_probs=251.5
Q ss_pred CceeHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHHH
Q 046221 114 YLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLD 193 (572)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 193 (572)
+...|..++. +.+.|++++|..+|+++.+.. +-+...|...+..+.+.|+++.|..+|+.+++.. |+...|..++.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 4567777777 467888888888888888752 3355677788888888888888888888887753 56666666664
Q ss_pred H-HHhCCCHHHHHH----HHhhcCC------CCcccHHHHHHHHHc---------cCCHHHHHHHHHHHHhCCCCCCc--
Q 046221 194 M-YSCLMDLDAAIQ----IFREMEC------KDVISWTRMMGLFVD---------FEYAGDALKIFREMRKSRIICDT-- 251 (572)
Q Consensus 194 ~-~~~~~~~~~a~~----~~~~~~~------~~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~~~~p~~-- 251 (572)
. ....|+.+.|.+ +|+.... ++...|...+..... .|+++.|..+|++..+. |+.
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~~ 164 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMINI 164 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTTH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhhH
Confidence 3 234566665554 5554321 244566666665543 56777777777777662 322
Q ss_pred -cchHHHHHHhcccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHHHHHHhc-------cC------CCC-
Q 046221 252 -VALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQ-------IT------EKS- 316 (572)
Q Consensus 252 -~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-------~~------~~~- 316 (572)
..|..........|. ..+.. ++. .+.++++.|..++.. +. .|+
T Consensus 165 ~~~~~~~~~~e~~~~~-~~~~~-------------------~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~ 222 (530)
T 2ooe_A 165 EQLWRDYNKYEEGINI-HLAKK-------------------MIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQN 222 (530)
T ss_dssp HHHHHHHHHHHHHHCH-HHHHH-------------------HHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC-
T ss_pred HHHHHHHHHHHHhhch-hHHHH-------------------HHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCC
Confidence 111111110000000 00000 000 012334444443332 11 111
Q ss_pred -------cchHHHHHHHHHHc----CCh----HHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcc-------cccHH----
Q 046221 317 -------LVSWTAIISGYVQN----GCA----REALNQFIKMRQEKTDSVDSITLVSILTASGE-------LAALE---- 370 (572)
Q Consensus 317 -------~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~~---- 370 (572)
...|...+...... ++. ..+..+|++.... .+.+...|......+.+ .|+++
T Consensus 223 ~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~--~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~ 300 (530)
T 2ooe_A 223 TPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKL 300 (530)
T ss_dssp -CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhchhhhhccchhhhhh
Confidence 12344433322221 122 3666777777633 23345555555555553 57766
Q ss_pred ---HHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc-CCCCC-H-hHHHHHHHHHHhcCChHHHHHHHH
Q 046221 371 ---ICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFLRD-V-VSWNTIIYGYGVNGHGETALALYH 444 (572)
Q Consensus 371 ---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~-~~~~~l~~~~~~~~~~~~A~~~~~ 444 (572)
.|..++++..+.-.+.+...+..++..+.+.|++++|..+|+++ ...|+ . ..|..++..+.+.|+.++|..+|+
T Consensus 301 ~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 380 (530)
T 2ooe_A 301 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 380 (530)
T ss_dssp HHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 77888887775333456778888888888889999999998887 44454 2 478888888888888899999998
Q ss_pred HHHhcCCCCC-HHHHHHHHHH-HhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC-CC
Q 046221 445 KMTETGEVPD-SSTYLSILNA-CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE-GM 521 (572)
Q Consensus 445 ~~~~~g~~p~-~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~ 521 (572)
+..+. .|+ ...|...+.. +...|++++|..+|+.+++.. +.+...|..++..+.+.|+.++|..+|+++.. .|
T Consensus 381 ~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 381 KARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp HHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred HHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence 88874 343 2333322222 335788999999999888655 34567888888888888999999999988875 22
Q ss_pred -ChH----HHHHHHHHHhhhcCCHHHHHHHHHHHHhCCC
Q 046221 522 -GPN----IWRALLSGCVLHVGRFQDAEALRSGSQKKGI 555 (572)
Q Consensus 522 -~~~----~~~~l~~~~~~~~g~~~~A~~~~~~m~~~~~ 555 (572)
++. .|...+.....+ |+.+.+..+.+++.+.-+
T Consensus 457 ~~~~~~~~lw~~~~~~e~~~-G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 457 LPPEKSGEIWARFLAFESNI-GDLASILKVEKRRFTAFR 494 (530)
T ss_dssp SCGGGCHHHHHHHHHHHHHS-SCHHHHHHHHHHHHHHTH
T ss_pred CCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCc
Confidence 232 677777766666 888888888888876543
No 22
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.79 E-value=1.6e-16 Score=148.78 Aligned_cols=280 Identities=11% Similarity=-0.091 Sum_probs=214.1
Q ss_pred CChhhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCcccCCCCC
Q 046221 34 KNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNP 113 (572)
Q Consensus 34 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 113 (572)
.++..+..+...+...|++++|+++|+++.+.. +.+...+..++.++...|++++|..+++.+.+..+ .
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~----------~ 88 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP----------S 88 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT----------T
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc----------C
Confidence 466778888888899999999999999988764 45556777788888899999999999999988765 3
Q ss_pred CceeHHHHHHHHHhCC-ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHH
Q 046221 114 YLVSCNAIVAGFINNK-LFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVL 192 (572)
Q Consensus 114 ~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 192 (572)
+...|..+...+...| ++++|.+.|++..+.. +.+...+..+...+...|++++|...++...+.. +.+...+..+.
T Consensus 89 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 166 (330)
T 3hym_B 89 NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIG 166 (330)
T ss_dssp STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHH
Confidence 4568888899999999 9999999999988764 3356678888888999999999999999988875 44566677788
Q ss_pred HHHHhCCCHHHHHHHHhhcCC---CCcccHHHHHHHHHccCCHHHHHHHHHHHHhCC--------CCCCccchHHHHHHh
Q 046221 193 DMYSCLMDLDAAIQIFREMEC---KDVISWTRMMGLFVDFEYAGDALKIFREMRKSR--------IICDTVALLNLISVN 261 (572)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--------~~p~~~~~~~ll~~~ 261 (572)
..+...|++++|...+++... .+...+..+...+...|++++|...+++..+.. .+.+..++..+..++
T Consensus 167 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~ 246 (330)
T 3hym_B 167 LEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH
Confidence 888899999999999888765 355678888888888899998888888876531 122345666777777
Q ss_pred cccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHHHHHHhccCCC---CcchHHHHHHHH
Q 046221 262 AILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK---SLVSWTAIISGY 327 (572)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~ 327 (572)
...|++++|...++...+.. +.+...+..+..++.+.|++++|...|++..+- +...+..+..++
T Consensus 247 ~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 247 RKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 77777777777777777664 345566666777777777777777777766542 234445555544
No 23
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.78 E-value=1.1e-15 Score=152.87 Aligned_cols=378 Identities=10% Similarity=0.063 Sum_probs=244.1
Q ss_pred CCceeHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH-hccCChHHHHH----HHHHHHHh-cCCC-Ch
Q 046221 113 PYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC-VALGSRALCEL----IHGLTIKL-GLIL-DV 185 (572)
Q Consensus 113 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~ 185 (572)
.+...|..++..+.+.|++++|..+|++..+. .|+...|...+... ...|+.+.|.+ +|+..+.. |..| +.
T Consensus 44 ~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~ 121 (530)
T 2ooe_A 44 SSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSY 121 (530)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCH
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccH
Confidence 34567999999999999999999999999986 47877777766533 35577766655 66666653 5443 45
Q ss_pred hHHhHHHHHHHh---------CCCHHHHHHHHhhcCC-CCc---ccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcc
Q 046221 186 SVNNSVLDMYSC---------LMDLDAAIQIFREMEC-KDV---ISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTV 252 (572)
Q Consensus 186 ~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~-~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 252 (572)
..|...+....+ .|+++.|..+|++... |.. ..|..........+. ..+..+
T Consensus 122 ~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~-~~~~~~-------------- 186 (530)
T 2ooe_A 122 QIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINI-HLAKKM-------------- 186 (530)
T ss_dssp HHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCH-HHHHHH--------------
T ss_pred HHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhch-hHHHHH--------------
Confidence 677777776654 6889999999998876 322 122222211100000 000000
Q ss_pred chHHHHHHhcccCChHHHHHHHHHHHH------hC---CCCC--------cchHHHHHHHHHhc----CCh----hHHHH
Q 046221 253 ALLNLISVNAILGDLKRGKQLHAQVVL------GG---LQSE--------LRLSNSIIAMYSKC----GDL----DSSRS 307 (572)
Q Consensus 253 ~~~~ll~~~~~~~~~~~a~~~~~~~~~------~~---~~~~--------~~~~~~l~~~~~~~----~~~----~~a~~ 307 (572)
+. ...+++..|..++..... .. ++|+ ...|...+...... ++. +.+..
T Consensus 187 -----l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~ 259 (530)
T 2ooe_A 187 -----IE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMF 259 (530)
T ss_dssp -----HH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHH
T ss_pred -----HH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHH
Confidence 00 012333444444433211 00 1222 12222222221111 122 24555
Q ss_pred HHhccCC---CCcchHHHHHHHHHH-------cCChH-------HHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHH
Q 046221 308 VFNQITE---KSLVSWTAIISGYVQ-------NGCAR-------EALNQFIKMRQEKTDSVDSITLVSILTASGELAALE 370 (572)
Q Consensus 308 ~~~~~~~---~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 370 (572)
+|++... .+...|..++..+.+ .|+++ +|..+|++.. ..-.+.+...+..++..+.+.|+++
T Consensus 260 ~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al-~~~~p~~~~l~~~~~~~~~~~g~~~ 338 (530)
T 2ooe_A 260 AYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAI-STLLKKNMLLYFAYADYEESRMKYE 338 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHT-TTTCSSCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHH-HHhCcccHHHHHHHHHHHHhcCCHH
Confidence 6665543 345567666666664 67776 7888888875 2223445667777777788888888
Q ss_pred HHHHHHHHHHHhcCCCc--hhHHHHHHHHhhhcCChHHHHHHHHHc-CCCCC-HhHHHHHHH-HHHhcCChHHHHHHHHH
Q 046221 371 ICLQLHGIAFEAGFPRY--RSVQNCLISSYSKCGNVDLAYIVFEEM-GFLRD-VVSWNTIIY-GYGVNGHGETALALYHK 445 (572)
Q Consensus 371 ~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~-~~~~~~~~~~A~~~~~~ 445 (572)
.|..+++.+.+. .|+ ...|..++..+.+.|++++|.++|++. ...|+ ...|...+. .+...|+.++|..+|++
T Consensus 339 ~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~ 416 (530)
T 2ooe_A 339 KVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFEL 416 (530)
T ss_dssp HHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 888888888874 343 247888888888899999999999988 44343 222322222 23468999999999999
Q ss_pred HHhcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhhCChhHHHHHHHhccC
Q 046221 446 MTETGEVP-DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPS--QEHYGCVVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 446 ~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
..+. .| +...|..++..+.+.|+.++|..+|+++++.....|+ ...|...+....+.|+.+.+..+.+++.+
T Consensus 417 al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 417 GLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9884 46 5688889999999999999999999999865444443 34788888888889999999999998876
No 24
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.78 E-value=3.9e-15 Score=147.29 Aligned_cols=347 Identities=13% Similarity=-0.002 Sum_probs=203.5
Q ss_pred CceeHHHHHHHHHh----CCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc----cCChHHHHHHHHHHHHhcCCCCh
Q 046221 114 YLVSCNAIVAGFIN----NKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA----LGSRALCELIHGLTIKLGLILDV 185 (572)
Q Consensus 114 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 185 (572)
+...+..+...|.. .+++++|+..|++..+.| +...+..+-..+.. .++.++|...+++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 34566777777777 788888988888887764 55667777777776 788888888888887754 55
Q ss_pred hHHhHHHHHHHh----CCCHHHHHHHHhhcCC-CCcccHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCccchHH
Q 046221 186 SVNNSVLDMYSC----LMDLDAAIQIFREMEC-KDVISWTRMMGLFVD----FEYAGDALKIFREMRKSRIICDTVALLN 256 (572)
Q Consensus 186 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 256 (572)
..+..|...|.. .++.++|...|++..+ .+...+..+...|.. .+++++|.+.|++..+.| +...+..
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~ 188 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQ 188 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 666667777777 6788888888877654 355666677777766 677778888887777654 4455555
Q ss_pred HHHHhcc----cCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHh----cCChhHHHHHHhccCCC-CcchHHHHHHHH
Q 046221 257 LISVNAI----LGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSK----CGDLDSSRSVFNQITEK-SLVSWTAIISGY 327 (572)
Q Consensus 257 ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~ 327 (572)
+...+.. .++.++|...++...+.+ +...+..+...|.. .+++++|...|++..+. +...+..+...|
T Consensus 189 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y 265 (490)
T 2xm6_A 189 LGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYIL 265 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5555554 677777777777776654 33445555566654 56667777776665442 334555555555
Q ss_pred HH----cCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhccc-----ccHHHHHHHHHHHHHhcCCCchhHHHHHHHHh
Q 046221 328 VQ----NGCAREALNQFIKMRQEKTDSVDSITLVSILTASGEL-----AALEICLQLHGIAFEAGFPRYRSVQNCLISSY 398 (572)
Q Consensus 328 ~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 398 (572)
.. .+++++|+..|++.. ..+ +...+..+...+... ++.++|...++...+.+ +...+..+...|
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~-~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y 338 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSA-EQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIY 338 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHH-TTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HCCCCCCCCHHHHHHHHHHHH-HcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHH
Confidence 55 566666666666664 222 222333333333333 45555555555554433 223333344444
Q ss_pred hhcC---ChHHHHHHHHHcCCCCCHhHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc----
Q 046221 399 SKCG---NVDLAYIVFEEMGFLRDVVSWNTIIYGYGV----NGHGETALALYHKMTETGEVPDSSTYLSILNACGH---- 467 (572)
Q Consensus 399 ~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~---- 467 (572)
...| +.++|.+.|++.-...+...+..+...|.. .+++++|...|++..+.| +...+..|...|..
T Consensus 339 ~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 339 FRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp HHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSS
T ss_pred HhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCC
Confidence 4333 444555555444111234444444444444 445555555555554432 23344444444443
Q ss_pred cCChHHHHHHHHHhH
Q 046221 468 AGLTNDGLVIFNQMI 482 (572)
Q Consensus 468 ~g~~~~a~~~~~~~~ 482 (572)
.+++++|...|+++.
T Consensus 416 ~~d~~~A~~~~~~A~ 430 (490)
T 2xm6_A 416 ERDYVQAWAWFDTAS 430 (490)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 445555555555544
No 25
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.77 E-value=5.5e-15 Score=146.20 Aligned_cols=365 Identities=12% Similarity=0.010 Sum_probs=280.9
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc----cCChHHHHHHHHHHHHhcCCCChhHHhHHHHHHHh----CCCHHH
Q 046221 132 QQAVLLFNFFRGSGLVPNAVTMLTVIRGCVA----LGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSC----LMDLDA 203 (572)
Q Consensus 132 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 203 (572)
..+++.+....+.| +...+..+-..+.. .+++++|...++...+.| +...+..|...|.. .++.++
T Consensus 24 ~~~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 97 (490)
T 2xm6_A 24 NVNLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQ 97 (490)
T ss_dssp -CCHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred hHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 34567777666644 67777777777777 889999999999998864 56677888888888 899999
Q ss_pred HHHHHhhcCC-CCcccHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCccchHHHHHHhcc----cCChHHHHHHH
Q 046221 204 AIQIFREMEC-KDVISWTRMMGLFVD----FEYAGDALKIFREMRKSRIICDTVALLNLISVNAI----LGDLKRGKQLH 274 (572)
Q Consensus 204 a~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~ 274 (572)
|...|++..+ .+...+..|...|.. .+++++|...|++..+.| +...+..+...+.. .++.++|...+
T Consensus 98 A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 174 (490)
T 2xm6_A 98 AVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWY 174 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 9999988765 466778888888887 789999999999998875 45566666666665 78899999999
Q ss_pred HHHHHhCCCCCcchHHHHHHHHHh----cCChhHHHHHHhccCC-CCcchHHHHHHHHHH----cCChHHHHHHHHHHHh
Q 046221 275 AQVVLGGLQSELRLSNSIIAMYSK----CGDLDSSRSVFNQITE-KSLVSWTAIISGYVQ----NGCAREALNQFIKMRQ 345 (572)
Q Consensus 275 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~ 345 (572)
+...+.+ +...+..+...|.. .++.++|...|++..+ .+..++..+...|.. .+++++|..+|++..
T Consensus 175 ~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~- 250 (490)
T 2xm6_A 175 SKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSA- 250 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-
T ss_pred HHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-
Confidence 9988765 56677778888887 7899999999988764 455677777777776 788999999999886
Q ss_pred cCCCCCCHhHHHHHHHHhcc----cccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhc-----CChHHHHHHHHHcCC
Q 046221 346 EKTDSVDSITLVSILTASGE----LAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC-----GNVDLAYIVFEEMGF 416 (572)
Q Consensus 346 ~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~ 416 (572)
..+ +...+..+...+.. .++.++|...++...+.+ +...+..+...|... +++++|...+++.-.
T Consensus 251 ~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~ 324 (490)
T 2xm6_A 251 EQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE 324 (490)
T ss_dssp TTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh
Confidence 432 34455555555555 788999999998887654 445666677777776 889999999988822
Q ss_pred CCCHhHHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHhHHhcCCCC
Q 046221 417 LRDVVSWNTIIYGYGVNG---HGETALALYHKMTETGEVPDSSTYLSILNACGH----AGLTNDGLVIFNQMIEENKVKP 489 (572)
Q Consensus 417 ~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~ 489 (572)
..+...+..+...|...| ++++|+.+|++..+. .+...+..+...|.. .+++++|..+|+++.+. .
T Consensus 325 ~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~ 397 (490)
T 2xm6_A 325 QGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ----G 397 (490)
T ss_dssp TTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----T
T ss_pred cCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC----C
Confidence 234567777777777756 788899999988885 356777788888877 78899999999988653 2
Q ss_pred ChhHHHHHHHHHHh----hCChhHHHHHHHhccC-CCC
Q 046221 490 SQEHYGCVVDLLAR----AGCLSDASGLAGKLLE-GMG 522 (572)
Q Consensus 490 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~ 522 (572)
+...+..|..+|.+ .+++++|...|++..+ .|+
T Consensus 398 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 398 LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 56677888888887 7899999999998876 433
No 26
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.77 E-value=7.3e-17 Score=153.69 Aligned_cols=250 Identities=11% Similarity=0.017 Sum_probs=122.3
Q ss_pred hcCChhhHHH-HhccCCC-----C--ChhhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHcCCCChH
Q 046221 17 KSGKIKEAEN-LFDEIPE-----K--NVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLE 88 (572)
Q Consensus 17 ~~~~~~~A~~-~~~~~~~-----~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 88 (572)
-.|++++|+. .|++... | +...+..+...+...|++++|+..|+++.+.. +.+...+..+..++...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3355666666 5554332 1 23456666666666666666666666666553 334455666666666666666
Q ss_pred HHHHHHHHHHHhcCCCCcccCCCCCCceeHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHH-------------
Q 046221 89 LARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLT------------- 155 (572)
Q Consensus 89 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~------------- 155 (572)
+|...++.+.+..+ .+..++..+...+...|++++|.+.|+++.+.... +...+..
T Consensus 116 ~A~~~~~~al~~~~----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 184 (368)
T 1fch_A 116 LAISALRRCLELKP----------DNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPS 184 (368)
T ss_dssp HHHHHHHHHHHHCT----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC--------------
T ss_pred HHHHHHHHHHhcCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHH
Confidence 66666666666543 33455666666666666666666666666654311 1111110
Q ss_pred --HHHHHhccCChHHHHHHHHHHHHhcCCC-ChhHHhHHHHHHHhCCCHHHHHHHHhhcCC---CCcccHHHHHHHHHcc
Q 046221 156 --VIRGCVALGSRALCELIHGLTIKLGLIL-DVSVNNSVLDMYSCLMDLDAAIQIFREMEC---KDVISWTRMMGLFVDF 229 (572)
Q Consensus 156 --ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~ 229 (572)
.+..+...|++++|...++.+++..... +..++..+...+.+.|++++|...|++... .+..+|..+...+...
T Consensus 185 ~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 264 (368)
T 1fch_A 185 KRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANG 264 (368)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHc
Confidence 1222224455555555555555443111 344455555555555555555555554432 2334445555555555
Q ss_pred CCHHHHHHHHHHHHhCCCCCCccchHHHHHHhcccCChHHHHHHHHHHHH
Q 046221 230 EYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279 (572)
Q Consensus 230 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 279 (572)
|++++|...|+++.+.. +.+...+..+..++...|++++|...++.+.+
T Consensus 265 g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 265 NQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55555555555544431 12233444444444444444444444444443
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=2.5e-16 Score=143.48 Aligned_cols=225 Identities=9% Similarity=-0.007 Sum_probs=141.6
Q ss_pred HHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC-CHhHHHHHHHHhccccc
Q 046221 290 NSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV-DSITLVSILTASGELAA 368 (572)
Q Consensus 290 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~ 368 (572)
..+.++|...|+++.|...++....++..++..+...+...++.++|++.++++. ..+..| +...+..+...+...|+
T Consensus 38 ~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll-~~~~~P~~~~~~~~la~~~~~~g~ 116 (291)
T 3mkr_A 38 VFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREM-SRSVDVTNTTFLLMAASIYFYDQN 116 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHH-HSCCCCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHH-hcccCCCCHHHHHHHHHHHHHCCC
Confidence 3455667777777777766665444444566666667777777777777777765 433323 34445555566667777
Q ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc-CCCCCHhHH---HHHHHHHHhcCChHHHHHHHH
Q 046221 369 LEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFLRDVVSW---NTIIYGYGVNGHGETALALYH 444 (572)
Q Consensus 369 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~ 444 (572)
+++|.+.++. +.+...+..++..+.+.|++++|.+.++++ ...|+.... ..++..+...|++++|..+|+
T Consensus 117 ~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~ 190 (291)
T 3mkr_A 117 PDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQ 190 (291)
T ss_dssp HHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred HHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 7777777665 455666667777777777777777777776 333442211 112233334567777777777
Q ss_pred HHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhH-HHHHHHhccC-CCC
Q 046221 445 KMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSD-ASGLAGKLLE-GMG 522 (572)
Q Consensus 445 ~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~-~~~ 522 (572)
++.+. .+.+...++.+..++.+.|++++|...|+++++.. +-+..++..++..+...|+..+ +.++++++.+ .|+
T Consensus 191 ~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~--p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 191 EMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD--SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp HHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred HHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence 77765 23455667777777777777777777777776544 3455567777777777777654 4567776665 444
Q ss_pred hH
Q 046221 523 PN 524 (572)
Q Consensus 523 ~~ 524 (572)
..
T Consensus 268 ~~ 269 (291)
T 3mkr_A 268 HP 269 (291)
T ss_dssp CH
T ss_pred Ch
Confidence 43
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.75 E-value=1.3e-16 Score=151.77 Aligned_cols=266 Identities=11% Similarity=0.031 Sum_probs=173.2
Q ss_pred ccchHHHHHHhcccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHHHHHHhccCC---CCcchHHHHHHHH
Q 046221 251 TVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE---KSLVSWTAIISGY 327 (572)
Q Consensus 251 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 327 (572)
...+..+...+...|++++|...++.+.+.. +.+..++..+..+|.+.|++++|...|+++.+ .+..+|..+..+|
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY 143 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3446666666677777777777777776654 34455666666666666666666666665542 2345566666666
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHH
Q 046221 328 VQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA 407 (572)
Q Consensus 328 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 407 (572)
...|++++|+..|+++....+..+ ..+..+ ......+..+...+...|++++|
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~--~~~~~~-------------------------~~~~~~~~~l~~~~~~~g~~~~A 196 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYK--YLVKNK-------------------------KGSPGLTRRMSKSPVDSSVLEGV 196 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHH--CC--------------------------------------------CCHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccch--HHHhhh-------------------------ccchHHHHHHHHHHhhhhhHHHH
Confidence 666666666666666642111000 000000 01122334456777888888888
Q ss_pred HHHHHHc-CCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhH
Q 046221 408 YIVFEEM-GFLR---DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNACGHAGLTNDGLVIFNQMI 482 (572)
Q Consensus 408 ~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 482 (572)
...++++ ...| +..++..+...|...|++++|+..|+++.+. .| +..+|..+..+|...|++++|+..|++++
T Consensus 197 ~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 274 (365)
T 4eqf_A 197 KELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRAL 274 (365)
T ss_dssp HHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888887 2222 5778888888888889999999999888884 44 56888888888999999999999999887
Q ss_pred HhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC-CC-------------ChHHHHHHHHHHhhhcCCHHHHHHHHH
Q 046221 483 EENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE-GM-------------GPNIWRALLSGCVLHVGRFQDAEALRS 548 (572)
Q Consensus 483 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-------------~~~~~~~l~~~~~~~~g~~~~A~~~~~ 548 (572)
+.. +.+...+..+..+|.+.|++++|.+.++++.. .| +...|..+...+... |+.+.+..+.+
T Consensus 275 ~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~ 351 (365)
T 4eqf_A 275 EIQ--PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLM-DQPELFQAANL 351 (365)
T ss_dssp HHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHH-TCHHHHHHHHT
T ss_pred hcC--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHc-CcHHHHHHHHH
Confidence 654 44577888888899999999999999988776 22 256788888877766 88888877655
Q ss_pred H
Q 046221 549 G 549 (572)
Q Consensus 549 ~ 549 (572)
+
T Consensus 352 ~ 352 (365)
T 4eqf_A 352 G 352 (365)
T ss_dssp T
T ss_pred h
Confidence 4
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.74 E-value=5e-16 Score=147.65 Aligned_cols=274 Identities=11% Similarity=-0.043 Sum_probs=207.7
Q ss_pred CcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCccchHHHHHHhcccCChHHHHHHHHHHHHhCCCCCcchHHHHHH
Q 046221 215 DVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIA 294 (572)
Q Consensus 215 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 294 (572)
+...|..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 55679999999999999999999999998863 3467788899999999999999999999999876 556778999999
Q ss_pred HHHhcCChhHHHHHHhccCCCCc---chHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHH
Q 046221 295 MYSKCGDLDSSRSVFNQITEKSL---VSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEI 371 (572)
Q Consensus 295 ~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 371 (572)
+|...|++++|...|+++.+.++ ..+..+. .....+..+...+...|++++
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~--------------------------~~~~~~~~l~~~~~~~g~~~~ 195 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKK--------------------------GSPGLTRRMSKSPVDSSVLEG 195 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC---------------------------------------------CCHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhc--------------------------cchHHHHHHHHHHhhhhhHHH
Confidence 99999999999999998764221 1111110 112233344455566666666
Q ss_pred HHHHHHHHHHhcCC-CchhHHHHHHHHhhhcCChHHHHHHHHHc--CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 046221 372 CLQLHGIAFEAGFP-RYRSVQNCLISSYSKCGNVDLAYIVFEEM--GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTE 448 (572)
Q Consensus 372 a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 448 (572)
|...++.+.+.... .+...+..+...+...|++++|.+.+++. ..+.+..+|..+..+|...|++++|+..|+++.+
T Consensus 196 A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 275 (365)
T 4eqf_A 196 VKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALE 275 (365)
T ss_dssp HHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66666666665422 15677788888888999999999999887 3334578899999999999999999999999988
Q ss_pred cCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCC----------CChhHHHHHHHHHHhhCChhHHHHHHHhc
Q 046221 449 TGEVP-DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVK----------PSQEHYGCVVDLLARAGCLSDASGLAGKL 517 (572)
Q Consensus 449 ~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 517 (572)
. .| +..++..+..+|...|++++|...|+++++...-. .+..+|..+..++...|+.+.|..+.++-
T Consensus 276 ~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 276 I--QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp H--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred c--CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 4 55 46889999999999999999999999987643110 13568999999999999999999888764
Q ss_pred c
Q 046221 518 L 518 (572)
Q Consensus 518 ~ 518 (572)
.
T Consensus 354 l 354 (365)
T 4eqf_A 354 L 354 (365)
T ss_dssp C
T ss_pred H
Confidence 4
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=1.4e-15 Score=138.52 Aligned_cols=251 Identities=10% Similarity=0.009 Sum_probs=204.9
Q ss_pred HHHHHhcCChhHHHHHHhccCCCCc----chHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhccccc
Q 046221 293 IAMYSKCGDLDSSRSVFNQITEKSL----VSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAA 368 (572)
Q Consensus 293 ~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 368 (572)
++.....|+++.|+..++.....++ .....+..+|...|+++.|+..++. ..+|+..++..+...+...++
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-----~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP-----SSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-----TSCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc-----cCChhHHHHHHHHHHHcCCCc
Confidence 3455677999999999988765443 2445578899999999999976533 356677888899999999999
Q ss_pred HHHHHHHHHHHHHhcCCC-chhHHHHHHHHhhhcCChHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 046221 369 LEICLQLHGIAFEAGFPR-YRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMT 447 (572)
Q Consensus 369 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 447 (572)
.+.|.+.++.+...+..| +...+..+..++...|++++|++.+++ +.+...+..++..|.+.|++++|.+.|+++.
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~---~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ---GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT---CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999998877544 566777788999999999999999998 4678889999999999999999999999999
Q ss_pred hcCCCCCHHHH---HHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC--CCC
Q 046221 448 ETGEVPDSSTY---LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE--GMG 522 (572)
Q Consensus 448 ~~g~~p~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~ 522 (572)
+. .|+.... ..++..+...|++++|..+|+++++.. +.+...++.+..++.+.|++++|.+.++++.. +.+
T Consensus 158 ~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~ 233 (291)
T 3mkr_A 158 DQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC--SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH 233 (291)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 85 5664321 223344556699999999999998764 67888999999999999999999999999887 556
Q ss_pred hHHHHHHHHHHhhhcCCHHH-HHHHHHHHHhCCCC
Q 046221 523 PNIWRALLSGCVLHVGRFQD-AEALRSGSQKKGII 556 (572)
Q Consensus 523 ~~~~~~l~~~~~~~~g~~~~-A~~~~~~m~~~~~~ 556 (572)
+.++..+...+... |+.++ +.++++++.+..+.
T Consensus 234 ~~~l~~l~~~~~~~-g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 234 PETLINLVVLSQHL-GKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp HHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCCC
Confidence 77888888777776 88876 57899998876654
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.73 E-value=1.7e-15 Score=141.53 Aligned_cols=224 Identities=12% Similarity=0.011 Sum_probs=124.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHhccCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHH-----
Q 046221 288 LSNSIIAMYSKCGDLDSSRSVFNQITE---KSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSI----- 359 (572)
Q Consensus 288 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l----- 359 (572)
.+..+..++...|++++|...|+++.+ .+...+..+...+...|++++|...++++....+..+ ..+..+
T Consensus 57 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~ 134 (327)
T 3cv0_A 57 AWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE--QLGSVNLQADV 134 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTT--TC---------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH--HHHHHHhHHHH
Confidence 334444444445555555544444331 2334455555566666666666666666552221111 111111
Q ss_pred ---------HH-HhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc--CCCCCHhHHHHHH
Q 046221 360 ---------LT-ASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM--GFLRDVVSWNTII 427 (572)
Q Consensus 360 ---------l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~ 427 (572)
.. .+...|+++.|...++.+.+.. +.+...+..+...+...|++++|.+.++++ ..+.+...+..+.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 213 (327)
T 3cv0_A 135 DIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLG 213 (327)
T ss_dssp -----------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 11 2556666677777766666554 335556666666666677777777666666 2223455666666
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC------------ChhHH
Q 046221 428 YGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKP------------SQEHY 494 (572)
Q Consensus 428 ~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------------~~~~~ 494 (572)
..|...|++++|...++++.+. .| +..++..+...+...|++++|.+.++++++.. +. +...+
T Consensus 214 ~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~ 289 (327)
T 3cv0_A 214 ATLANGNRPQEALDAYNRALDI--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ--VGGTTPTGEASREATRSMW 289 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTSCC-----CCTHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CccccccccchhhcCHHHH
Confidence 6666667777777777666663 23 34666666666666677777777666665433 11 24456
Q ss_pred HHHHHHHHhhCChhHHHHHHHhcc
Q 046221 495 GCVVDLLARAGCLSDASGLAGKLL 518 (572)
Q Consensus 495 ~~l~~~~~~~g~~~~A~~~~~~~~ 518 (572)
..+..++.+.|++++|..++++..
T Consensus 290 ~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 290 DFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Confidence 666666666666666666666544
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.71 E-value=1.5e-15 Score=142.00 Aligned_cols=265 Identities=9% Similarity=-0.025 Sum_probs=189.6
Q ss_pred ChhhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCcccCCCCCC
Q 046221 35 NVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPY 114 (572)
Q Consensus 35 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 114 (572)
+...|..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|++++|...++.+.+..+ .+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~----------~~ 88 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP----------KD 88 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------TC
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc----------CC
Confidence 44566777778888888888888888887764 44556777777788888888888888888887754 34
Q ss_pred ceeHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHH--------------HH-HHhccCChHHHHHHHHHHHHh
Q 046221 115 LVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTV--------------IR-GCVALGSRALCELIHGLTIKL 179 (572)
Q Consensus 115 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l--------------l~-~~~~~~~~~~a~~~~~~~~~~ 179 (572)
...+..+...+...|++++|.+.++++.+.... +...+..+ .. .+...|++++|...++.+++.
T Consensus 89 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 167 (327)
T 3cv0_A 89 IAVHAALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM 167 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh
Confidence 567788888888888888888888888775321 22222222 22 266777888888888888876
Q ss_pred cCCCChhHHhHHHHHHHhCCCHHHHHHHHhhcCC---CCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCccchHH
Q 046221 180 GLILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC---KDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLN 256 (572)
Q Consensus 180 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 256 (572)
. +.+...+..+...+.+.|++++|...+++... .+..+|..+...+...|++++|...+++..+.. +.+...+..
T Consensus 168 ~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 245 (327)
T 3cv0_A 168 N-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYN 245 (327)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHH
Confidence 5 44667788888888888888888888887654 345677788888888888888888888877652 234556777
Q ss_pred HHHHhcccCChHHHHHHHHHHHHhCCCC-----------CcchHHHHHHHHHhcCChhHHHHHHhccC
Q 046221 257 LISVNAILGDLKRGKQLHAQVVLGGLQS-----------ELRLSNSIIAMYSKCGDLDSSRSVFNQIT 313 (572)
Q Consensus 257 ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 313 (572)
+...+...|++++|...++.+.+..... +...+..+..++.+.|++++|..++++..
T Consensus 246 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 246 MAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 7777777888888888887777654331 35566667777777777777777776543
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.71 E-value=1.2e-14 Score=143.53 Aligned_cols=386 Identities=9% Similarity=-0.060 Sum_probs=163.6
Q ss_pred eeHHHHHHHHHhCCChHHHHHHHHHHHhC-----C--CCC-CHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhH
Q 046221 116 VSCNAIVAGFINNKLFQQAVLLFNFFRGS-----G--LVP-NAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSV 187 (572)
Q Consensus 116 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~--~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 187 (572)
..||.|...+...|++++|++.|++..+. + ..| ...+|+.+..+|...|++++|...+++..+..
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~------- 124 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC------- 124 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh-------
Confidence 34666666666666666666666654321 0 011 23345555555555555555555555444321
Q ss_pred HhHHHHHHHhCCCHHHHHHHHhhcCC----CCcccHHHHHHHHHc--cCCHHHHHHHHHHHHhCCCCCCcc-chHHHHHH
Q 046221 188 NNSVLDMYSCLMDLDAAIQIFREMEC----KDVISWTRMMGLFVD--FEYAGDALKIFREMRKSRIICDTV-ALLNLISV 260 (572)
Q Consensus 188 ~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~ 260 (572)
..... ....++..+..++.. .+++++|...|++..+. .|+.. .+..+..+
T Consensus 125 ---------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~ 181 (472)
T 4g1t_A 125 ---------------------EKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIA 181 (472)
T ss_dssp ---------------------HHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHH
T ss_pred ---------------------HhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 00000 011223322222222 23455555555555543 23322 22222211
Q ss_pred ---hcccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHh----cCChhHHHHHHhccCC---CCcchHHHHHHHHHHc
Q 046221 261 ---NAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSK----CGDLDSSRSVFNQITE---KSLVSWTAIISGYVQN 330 (572)
Q Consensus 261 ---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 330 (572)
+...++.++|...++...+.. +.+..++..+...+.. .|++++|.+.+++... .+...+..+...|...
T Consensus 182 ~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~ 260 (472)
T 4g1t_A 182 SYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRK 260 (472)
T ss_dssp HHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHT
T ss_pred HHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHc
Confidence 223344455555555555443 2233333333333322 3455566666655432 2334556666666666
Q ss_pred CChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHH
Q 046221 331 GCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIV 410 (572)
Q Consensus 331 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 410 (572)
|++++|+..+++..+.. +-+..++..+...+...+....+. ............+..+.|...
T Consensus 261 ~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~y~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~A~~~ 322 (472)
T 4g1t_A 261 DEPDKAIELLKKALEYI--PNNAYLHCQIGCCYRAKVFQVMNL----------------RENGMYGKRKLLELIGHAVAH 322 (472)
T ss_dssp TCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHHhhhH----------------HHHHHHHHHHHHhhHHHHHHH
Confidence 66667666666665222 222333333332221110000000 000000011112234566666
Q ss_pred HHHc--CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH--HHHHHHHH-HHhccCChHHHHHHHHHhHHhc
Q 046221 411 FEEM--GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS--STYLSILN-ACGHAGLTNDGLVIFNQMIEEN 485 (572)
Q Consensus 411 ~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~--~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~ 485 (572)
+++. ..+.+...+..+...|...|++++|+..|++..+....|.. ..+..+.. .....|++++|+..|+++++
T Consensus 323 ~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~-- 400 (472)
T 4g1t_A 323 LKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK-- 400 (472)
T ss_dssp HHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--
T ss_pred HHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--
Confidence 6665 12233455666777777777777777777777764322211 12222222 23456777777777777764
Q ss_pred CCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC--CCChHHHHHHHHHHhhhcCCHHHHHHHHHHHHhCCCCCCCceeE
Q 046221 486 KVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE--GMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIPGISF 563 (572)
Q Consensus 486 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 563 (572)
+.|+....... ...+..++++... +.++.+|..+...+... |++++|++.|++..+.+...+...+|
T Consensus 401 -i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~-g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 401 -INQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELN-EKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp -SCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHH-HHCC----------------------
T ss_pred -cCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 33443322211 2233344444433 44555666666666655 77777777777777766655555555
No 34
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.71 E-value=1.4e-17 Score=166.91 Aligned_cols=151 Identities=13% Similarity=0.100 Sum_probs=124.2
Q ss_pred cchHHHHHHHHcCCCChHHHHHHHHHHHH---hcCCCCcccCCCCCCceeHHHHHHHHHhCCChHHHHHHHHHHHhCCCC
Q 046221 71 SFTMVGVLVAAAGLQNLELARSIHGLMVK---FGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLV 147 (572)
Q Consensus 71 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 147 (572)
..||+++|.+||+.|++++|..+|+.|.+ .|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~---------~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~ 197 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRK---------LLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLT 197 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHT---------TCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCC---------CCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 34899999999999999999999988764 466 499999999999999999999999999999999999
Q ss_pred CCHhhHHHHHHHHhccCCh-HHHHHHHHHHHHhcCCCChhHHhHHHHHHHhCCCHHHHHHHHhhcCC-----CCcccHHH
Q 046221 148 PNAVTMLTVIRGCVALGSR-ALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC-----KDVISWTR 221 (572)
Q Consensus 148 p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~ 221 (572)
||..||+++|.++++.|+. +.|.++|++|.+.|+.||..+|+.++....+.+-++...++...+.. +...+...
T Consensus 198 PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~L 277 (1134)
T 3spa_A 198 PDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKL 277 (1134)
T ss_dssp CCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTT
T ss_pred CcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHH
Confidence 9999999999999999985 78999999999999999999999999877665434333333333321 12344455
Q ss_pred HHHHHHccC
Q 046221 222 MMGLFVDFE 230 (572)
Q Consensus 222 li~~~~~~~ 230 (572)
|.+.|.+.+
T Consensus 278 L~dl~s~d~ 286 (1134)
T 3spa_A 278 LRDVYAKDG 286 (1134)
T ss_dssp THHHHCCCS
T ss_pred HHHHHccCC
Confidence 666666655
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.71 E-value=1.2e-17 Score=167.42 Aligned_cols=117 Identities=15% Similarity=0.151 Sum_probs=89.5
Q ss_pred chhHHHHHHHHhhhcCChHHHHHHHHHc------CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHH
Q 046221 387 YRSVQNCLISSYSKCGNVDLAYIVFEEM------GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS 460 (572)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ 460 (572)
-..+|+++|++||+.|++++|.++|++| |+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 3457788888888888888888887665 5678888888888888888888888888888888888888888888
Q ss_pred HHHHHhccCCh-HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhh
Q 046221 461 ILNACGHAGLT-NDGLVIFNQMIEENKVKPSQEHYGCVVDLLARA 504 (572)
Q Consensus 461 l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 504 (572)
+|.++++.|+. ++|.++|++|. ..|+.||..+|++++....+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~-~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMS-QEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHH-HHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHH-HcCCCCChhhcccccChhhHH
Confidence 88888887764 67778888884 667888888887777655544
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.70 E-value=3.6e-15 Score=147.19 Aligned_cols=287 Identities=8% Similarity=-0.064 Sum_probs=151.4
Q ss_pred ccHHHHHHHHHccCCHHHHHHHHHHHHhCC------CCC-CccchHHHHHHhc--ccCChHHHHHHHHHHHHhCCCCCcc
Q 046221 217 ISWTRMMGLFVDFEYAGDALKIFREMRKSR------IIC-DTVALLNLISVNA--ILGDLKRGKQLHAQVVLGGLQSELR 287 (572)
Q Consensus 217 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------~~p-~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~ 287 (572)
.+|+.+..+|...|++++|...+++..+.. ..+ ...++.....++. ..+++++|...|+...+.. +.++.
T Consensus 95 ~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~ 173 (472)
T 4g1t_A 95 VTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPE 173 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHH
Confidence 456666666666677777666666554320 111 1223333333332 2346777777777777664 22333
Q ss_pred hHHHHHHH---HHhcCChhHHHHHHhccCC---CCcchHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCCCHhHHH
Q 046221 288 LSNSIIAM---YSKCGDLDSSRSVFNQITE---KSLVSWTAIISGYVQ----NGCAREALNQFIKMRQEKTDSVDSITLV 357 (572)
Q Consensus 288 ~~~~l~~~---~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 357 (572)
.+..+..+ +...++.++|++.+++..+ .+...+..+...+.. .+++++|.+.+++.... .+.+...+.
T Consensus 174 ~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~--~~~~~~~~~ 251 (472)
T 4g1t_A 174 FTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK--APGVTDVLR 251 (472)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH--CSSCHHHHH
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh--CccHHHHHH
Confidence 33333333 2334555666666655432 223334333333332 34455666666655422 223344455
Q ss_pred HHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChH
Q 046221 358 SILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGE 437 (572)
Q Consensus 358 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 437 (572)
.+...+...|+++.|...++...+.. |.+...+..+..+|...+....+ ... .. ........+..+
T Consensus 252 ~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~------~~~-~~------~~~~~~~~~~~~ 317 (472)
T 4g1t_A 252 SAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMN------LRE-NG------MYGKRKLLELIG 317 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHH------C-------------CHHHHHHHHH
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhh------HHH-HH------HHHHHHHHhhHH
Confidence 55555555566666666555555443 23333444444333221110000 000 00 000011123467
Q ss_pred HHHHHHHHHHhcCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChh----HHHHHHH-HHHhhCChhHHH
Q 046221 438 TALALYHKMTETGEVPD-SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQE----HYGCVVD-LLARAGCLSDAS 511 (572)
Q Consensus 438 ~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~-~~~~~g~~~~A~ 511 (572)
.|...+++..+. .|+ ..++..+...+...|++++|+..|+++++.. |+.. .+..+.. .+...|++++|+
T Consensus 318 ~A~~~~~~a~~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Ai 392 (472)
T 4g1t_A 318 HAVAHLKKADEA--NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKE---LTPVAKQLLHLRYGNFQLYQMKCEDKAI 392 (472)
T ss_dssp HHHHHHHHHHHH--CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC---CCHHHHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred HHHHHHHHHhhc--CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC---CCChHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 888999998884 454 4788889999999999999999999998543 3322 2333333 235789999999
Q ss_pred HHHHhccC-CCChHH
Q 046221 512 GLAGKLLE-GMGPNI 525 (572)
Q Consensus 512 ~~~~~~~~-~~~~~~ 525 (572)
..+++... .|+...
T Consensus 393 ~~y~kal~i~~~~~~ 407 (472)
T 4g1t_A 393 HHFIEGVKINQKSRE 407 (472)
T ss_dssp HHHHHHHHSCCCCHH
T ss_pred HHHHHHHhcCcccHH
Confidence 99999876 555443
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.62 E-value=7.1e-14 Score=125.50 Aligned_cols=218 Identities=13% Similarity=0.024 Sum_probs=104.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCC--Cc----hhHHHH
Q 046221 320 WTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFP--RY----RSVQNC 393 (572)
Q Consensus 320 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~ 393 (572)
+..+...+...|++++|+..|++..+.. .+...+..+...+...|+++.|...++...+.... ++ ...+..
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 3334444444444444444444444222 33444444444444445555555444444432211 11 344455
Q ss_pred HHHHhhhcCChHHHHHHHHHc-CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhccCCh
Q 046221 394 LISSYSKCGNVDLAYIVFEEM-GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD-SSTYLSILNACGHAGLT 471 (572)
Q Consensus 394 l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~ 471 (572)
+...+...|++++|...+++. ...|+. ..+...|++++|...++++.. ..|+ ...+..+...+...|++
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCH
Confidence 555555555555555555555 222332 223334455555555555555 2332 24455555555555555
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC--CCChHHHHHHHHHHhhhcCCHHHHHHHHHH
Q 046221 472 NDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE--GMGPNIWRALLSGCVLHVGRFQDAEALRSG 549 (572)
Q Consensus 472 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~g~~~~A~~~~~~ 549 (572)
++|...++++++.. +.+...+..+..++.+.|++++|...++++.. +.++..|..+...+... |++++|...+++
T Consensus 156 ~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~ 232 (258)
T 3uq3_A 156 PNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV-KEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-hhHHHHHHHHHH
Confidence 55555555555432 23344555555555555555555555555544 22334444444444444 555555555555
Q ss_pred HHh
Q 046221 550 SQK 552 (572)
Q Consensus 550 m~~ 552 (572)
..+
T Consensus 233 a~~ 235 (258)
T 3uq3_A 233 ART 235 (258)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 38
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.62 E-value=2.4e-13 Score=132.26 Aligned_cols=371 Identities=12% Similarity=0.046 Sum_probs=228.0
Q ss_pred HHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHHHHHHhCCCH---HHHHHHHhhcCCCCcccHHHHHHHHHccC----
Q 046221 158 RGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDL---DAAIQIFREMECKDVISWTRMMGLFVDFE---- 230 (572)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~li~~~~~~~---- 230 (572)
..+.+.|++++|.++|++..+.| +...+..|...|...|+. ++|...|++..+.++..+..+...+...+
T Consensus 11 ~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 11 NEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCH
T ss_pred HHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC
Confidence 33445566666666666665554 223333444445555666 77777777776666666777776555544
Q ss_pred -CHHHHHHHHHHHHhCCCCCCccchHHHHHHhcccCChH---HHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCCh----
Q 046221 231 -YAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLK---RGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDL---- 302 (572)
Q Consensus 231 -~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---- 302 (572)
++++|...|++..+.|. ...+..+...+...+..+ .+.+.+......| +......+...|...+.+
T Consensus 88 ~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp HHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGH
T ss_pred cCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCH
Confidence 67788888888877653 235555555555444333 3444444444444 345566677778777744
Q ss_pred hHHHHHHhccCCCCcchHHHHHHHHHHcC---ChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhccc----ccHHHHHHH
Q 046221 303 DSSRSVFNQITEKSLVSWTAIISGYVQNG---CAREALNQFIKMRQEKTDSVDSITLVSILTASGEL----AALEICLQL 375 (572)
Q Consensus 303 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~~~~~a~~~ 375 (572)
+.+..++......++..+..+...|...| +.++|++.|++.. ..+ +++...+..+...+... ++.++|..+
T Consensus 162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa-~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~ 239 (452)
T 3e4b_A 162 DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGV-SRG-TVTAQRVDSVARVLGDATLGTPDEKTAQAL 239 (452)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHH-HCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 44555666666777778889999999999 8999999999986 433 44555445555566554 689999999
Q ss_pred HHHHHHhcCCCchhHHHHHHHH-h--hhcCChHHHHHHHHHcCCCCCHhHHHHHHHHHHhcC-----ChHHHHHHHHHHH
Q 046221 376 HGIAFEAGFPRYRSVQNCLISS-Y--SKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNG-----HGETALALYHKMT 447 (572)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~~~ 447 (572)
|+... . -++..+..+... + ...+++++|.+.|++.-..-+...+..|...|. .| ++++|...|++..
T Consensus 240 ~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 240 LEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 98877 3 345555666665 3 468999999999998822236677777777776 44 8999999999887
Q ss_pred hcCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----hCChhHHHHHHHhccC
Q 046221 448 ETGEVPDSSTYLSILNACGH----AGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLAR----AGCLSDASGLAGKLLE 519 (572)
Q Consensus 448 ~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 519 (572)
. -+...+..|...|.. ..++++|..+|+++.+ .| +......|..+|.. ..+..+|..++++..+
T Consensus 315 -~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 315 -G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR-NG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp -T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT-TT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred -C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh-hC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 3 356677777777665 4489999999999864 33 34456677777764 4589999999999887
Q ss_pred CCChHHHHHH--HHHHhhhcCCHHHHHHHHHHHHhC
Q 046221 520 GMGPNIWRAL--LSGCVLHVGRFQDAEALRSGSQKK 553 (572)
Q Consensus 520 ~~~~~~~~~l--~~~~~~~~g~~~~A~~~~~~m~~~ 553 (572)
..++..-..+ +..... .++.++|..+.++-.+.
T Consensus 387 ~g~~~a~~~l~~l~~~~~-~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 387 QDTPEANDLATQLEAPLT-PAQRAEGQRLVQQELAA 421 (452)
T ss_dssp TCCHHHHHHHHHHHTTCC-HHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHh
Confidence 4444332222 222222 35677777777765543
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.59 E-value=5e-14 Score=122.45 Aligned_cols=192 Identities=16% Similarity=0.084 Sum_probs=106.7
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHH
Q 046221 316 SLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLI 395 (572)
Q Consensus 316 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 395 (572)
+...+..+...+.+.|++++|+..|++.. +.. |.+...+..+.
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al------------------------------------~~~-p~~~~a~~~lg 46 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERAL------------------------------------KEN-PQDPEALYWLA 46 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------------------------TTS-SSCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------------------------HhC-CCCHHHHHHHH
Confidence 33455555566666666666666666654 221 23344444555
Q ss_pred HHhhhcCChHHHHHHHHHc-CCCC-CHhHHHHHHHHHHhc-----------CChHHHHHHHHHHHhcCCCCC-HHHHHHH
Q 046221 396 SSYSKCGNVDLAYIVFEEM-GFLR-DVVSWNTIIYGYGVN-----------GHGETALALYHKMTETGEVPD-SSTYLSI 461 (572)
Q Consensus 396 ~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~g~~p~-~~~~~~l 461 (572)
.++.+.|++++|+..+++. ...| +...+..+...+... |++++|+..|++..+ +.|+ ...+..+
T Consensus 47 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~l 124 (217)
T 2pl2_A 47 RTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER--VNPRYAPLHLQR 124 (217)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH--hCcccHHHHHHH
Confidence 5555566666666665555 2222 344555555566665 777777777777766 3453 4666666
Q ss_pred HHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC--CCChHHHHHHHHHHhhhcCC
Q 046221 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE--GMGPNIWRALLSGCVLHVGR 539 (572)
Q Consensus 462 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~g~ 539 (572)
..++...|++++|+..|+++++.. .+...+..+..+|...|++++|...++++.+ +.++..+..+...+... |+
T Consensus 125 g~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~-g~ 200 (217)
T 2pl2_A 125 GLVYALLGERDKAEASLKQALALE---DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLK-GK 200 (217)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC----
T ss_pred HHHHHHcCChHHHHHHHHHHHhcc---cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-cC
Confidence 777777777777777777776443 4566666777777777777777777777665 33444555555555544 77
Q ss_pred HHHHHHHHHHH
Q 046221 540 FQDAEALRSGS 550 (572)
Q Consensus 540 ~~~A~~~~~~m 550 (572)
+++|...+++.
T Consensus 201 ~~~A~~~~~~~ 211 (217)
T 2pl2_A 201 AEEAARAAALE 211 (217)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 77777766654
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.59 E-value=1.8e-13 Score=118.98 Aligned_cols=206 Identities=11% Similarity=0.009 Sum_probs=133.4
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHhccCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHH
Q 046221 283 QSELRLSNSIIAMYSKCGDLDSSRSVFNQITEK---SLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSI 359 (572)
Q Consensus 283 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 359 (572)
+++...+..+...+.+.|++++|...|++..+. +...+..+...+.+.|++++|+..+++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART--PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHH
Confidence 567778888999999999999999999987653 45678888999999999999999999987332 2233344444
Q ss_pred HHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc-CCCC-CHhHHHHHHHHHHhcCChH
Q 046221 360 LTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFLR-DVVSWNTIIYGYGVNGHGE 437 (572)
Q Consensus 360 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~ 437 (572)
...+...+. . ... .+...|++++|+..+++. ...| +...|..+...|...|+++
T Consensus 80 g~~~~~~~~--------------~-~~~---------~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~ 135 (217)
T 2pl2_A 80 SEAYVALYR--------------Q-AED---------RERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERD 135 (217)
T ss_dssp HHHHHHHHH--------------T-CSS---------HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhhh--------------h-hhh---------hcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChH
Confidence 433333300 0 000 001127777777777766 3233 4566777777788888888
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhc
Q 046221 438 TALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL 517 (572)
Q Consensus 438 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 517 (572)
+|+..|++..+.. .+...+..+..++...|++++|+..|+++++.. |.+...+..+..++.+.|++++|.+.+++.
T Consensus 136 ~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 136 KAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA--PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 8888888887765 666777778888888888888888888887544 445567777778888888888888777765
Q ss_pred c
Q 046221 518 L 518 (572)
Q Consensus 518 ~ 518 (572)
.
T Consensus 212 ~ 212 (217)
T 2pl2_A 212 H 212 (217)
T ss_dssp -
T ss_pred h
Confidence 3
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.58 E-value=7.8e-13 Score=119.76 Aligned_cols=237 Identities=14% Similarity=0.030 Sum_probs=169.0
Q ss_pred HHHHHHHHhcCChhHHHHHHhccCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCC--HhHHHHHHHHhc
Q 046221 290 NSIIAMYSKCGDLDSSRSVFNQITE---KSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVD--SITLVSILTASG 364 (572)
Q Consensus 290 ~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~ll~~~~ 364 (572)
......+...|++++|...|++..+ .+...+..+..++...|++++|+..+++.. ..+..++ ...+..+...+.
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYF-SKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHH-TTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hccCchhHHHHHHHHHHHHHH
Confidence 3445566666777777777666542 234467777777777777777777777776 3322222 223666777777
Q ss_pred ccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc-CCCC-CHhHHHHHHHHHHhcCChHHHHHH
Q 046221 365 ELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFLR-DVVSWNTIIYGYGVNGHGETALAL 442 (572)
Q Consensus 365 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~ 442 (572)
..|+++.|...++...+.. +.+...+..+..+|...|++++|...+++. ...| +...|..+...+...+++++|...
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777788877777777754 446678888999999999999999999988 4444 466677776344445699999999
Q ss_pred HHHHHhcCCCCC-HHHHHHHHHHHhccCC---hHHHHHHHHHhHHhcCCCCCh------hHHHHHHHHHHhhCChhHHHH
Q 046221 443 YHKMTETGEVPD-SSTYLSILNACGHAGL---TNDGLVIFNQMIEENKVKPSQ------EHYGCVVDLLARAGCLSDASG 512 (572)
Q Consensus 443 ~~~~~~~g~~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~ 512 (572)
|+++.+. .|+ ...+..+..++...|+ +++|...++++++...-.|+. ..+..+...|.+.|++++|.+
T Consensus 165 ~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 165 FVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999984 554 5777788888888888 888999999887654333442 477788889999999999999
Q ss_pred HHHhccC-CCC-hHHHHHHH
Q 046221 513 LAGKLLE-GMG-PNIWRALL 530 (572)
Q Consensus 513 ~~~~~~~-~~~-~~~~~~l~ 530 (572)
.++++.+ .|+ +..+..+.
T Consensus 243 ~~~~al~~~p~~~~a~~~l~ 262 (272)
T 3u4t_A 243 AWKNILALDPTNKKAIDGLK 262 (272)
T ss_dssp HHHHHHHHCTTCHHHHHHHC
T ss_pred HHHHHHhcCccHHHHHHHhh
Confidence 9999887 554 44444443
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.58 E-value=4.7e-13 Score=130.17 Aligned_cols=347 Identities=10% Similarity=-0.009 Sum_probs=233.6
Q ss_pred HHHHHHhCCCHHHHHHHHhhcCC-CCcccHHHHHHHHHccCCH---HHHHHHHHHHHhCCCCCCccchHHHHHHhcccC-
Q 046221 191 VLDMYSCLMDLDAAIQIFREMEC-KDVISWTRMMGLFVDFEYA---GDALKIFREMRKSRIICDTVALLNLISVNAILG- 265 (572)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~---~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~- 265 (572)
+...+.+.|++++|.++|++..+ .+...+..|...|...|++ ++|...|++..+. ++..+..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCC
Confidence 45667778899999999998765 4666777777777778888 8999999998754 4555555555343433
Q ss_pred ----ChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhH---HHHHHhccC-CCCcchHHHHHHHHHHcCChHHHH
Q 046221 266 ----DLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDS---SRSVFNQIT-EKSLVSWTAIISGYVQNGCAREAL 337 (572)
Q Consensus 266 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~ 337 (572)
+.++|...++...+.|. ...+..|...|...+..++ +...+.... ..+...+..+...|...+.++++.
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGH
T ss_pred CCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCH
Confidence 78899999999998763 2366677788877665444 334444333 245667888888888888655554
Q ss_pred HHHHHHHhcCCCCCCHhHHHHHHHHhcccc---cHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhc----CChHHHHHH
Q 046221 338 NQFIKMRQEKTDSVDSITLVSILTASGELA---ALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC----GNVDLAYIV 410 (572)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~ 410 (572)
....... ..-...++..+..+...+...| +.++|...++...+.| +++...+..+..+|... +++++|.+.
T Consensus 162 ~~a~~~~-~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~ 239 (452)
T 3e4b_A 162 DDVERIC-KAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQAL 239 (452)
T ss_dssp HHHHHHH-HHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHH
T ss_pred HHHHHHH-HHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 4433332 1111222336777777777788 9999999999999887 44555445566667554 799999999
Q ss_pred HHHcCCCCCHhHHHHHHHH-H--HhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccC-----ChHHHHHHHHHhH
Q 046221 411 FEEMGFLRDVVSWNTIIYG-Y--GVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAG-----LTNDGLVIFNQMI 482 (572)
Q Consensus 411 ~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~~ 482 (572)
|++.- +-+...+..|... | ...+++++|+..|++..+.| +...+..|...|. .| ++++|..+|+++.
T Consensus 240 ~~~aa-~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 240 LEKIA-PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHHG-GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHHc-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 99987 5567777777776 4 56899999999999999876 6677777777776 55 9999999999885
Q ss_pred HhcCCCCChhHHHHHHHHHHh----hCChhHHHHHHHhccCCCChHHHHHHHHHHhhh---cCCHHHHHHHHHHHHhCCC
Q 046221 483 EENKVKPSQEHYGCVVDLLAR----AGCLSDASGLAGKLLEGMGPNIWRALLSGCVLH---VGRFQDAEALRSGSQKKGI 555 (572)
Q Consensus 483 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~---~g~~~~A~~~~~~m~~~~~ 555 (572)
+-+...+..|...|.. ..++++|..+|++..+..++.....|...|... ..+.++|...+++..+.|.
T Consensus 315 -----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 315 -----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp -----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred -----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 3466778888887766 349999999999998866667777776666532 2589999999999988775
Q ss_pred C
Q 046221 556 I 556 (572)
Q Consensus 556 ~ 556 (572)
.
T Consensus 390 ~ 390 (452)
T 3e4b_A 390 P 390 (452)
T ss_dssp H
T ss_pred H
Confidence 4
No 43
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.57 E-value=2.6e-13 Score=121.80 Aligned_cols=119 Identities=13% Similarity=-0.027 Sum_probs=79.4
Q ss_pred hhhcCChHHHHHHHHHc-CCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHH
Q 046221 398 YSKCGNVDLAYIVFEEM-GFLR-DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGL 475 (572)
Q Consensus 398 ~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~ 475 (572)
+.+.|++++|...++++ ...| +...+..+...+...|++++|...++++.+.. +.+..++..+..++...|++++|+
T Consensus 115 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 193 (258)
T 3uq3_A 115 LTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAI 193 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHH
Confidence 44445566666666665 2222 34556667777777777777777777777642 224567777777777777777777
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC
Q 046221 476 VIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
..++++++.. +.+...+..+..++.+.|++++|.+.++++.+
T Consensus 194 ~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 194 ADCNKAIEKD--PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 7777776543 34456677777777777777777777777665
No 44
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.55 E-value=1e-13 Score=125.86 Aligned_cols=244 Identities=8% Similarity=-0.067 Sum_probs=176.0
Q ss_pred HHHHHhhcCChhhHHHHhccCCCC-------ChhhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHcC
Q 046221 11 LLSNYFKSGKIKEAENLFDEIPEK-------NVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAG 83 (572)
Q Consensus 11 l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 83 (572)
+...+...|++++|+..|+++.+. +...|..+...+...|++++|+..|+++.+.. +.+...+..+...+..
T Consensus 11 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~ 89 (275)
T 1xnf_A 11 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQ 89 (275)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHH
T ss_pred eeeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHH
Confidence 344556778899999999876652 35678888888999999999999999988764 4456788888888889
Q ss_pred CCChHHHHHHHHHHHHhcCCCCcccCCCCCCceeHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcc
Q 046221 84 LQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163 (572)
Q Consensus 84 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 163 (572)
.|++++|...++.+.+..+ .+...|..+...+...|++++|.+.|+++.+. .|+.......+..+...
T Consensus 90 ~~~~~~A~~~~~~al~~~~----------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~ 157 (275)
T 1xnf_A 90 AGNFDAAYEAFDSVLELDP----------TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQK 157 (275)
T ss_dssp TTCHHHHHHHHHHHHHHCT----------TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCc----------cccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHh
Confidence 9999999999999888765 34668888889999999999999999988874 45555555555556677
Q ss_pred CChHHHHHHHHHHHHhcCCCChhHHhHHHHHHHhCCCHHHHHHHHhhcCCCC-------cccHHHHHHHHHccCCHHHHH
Q 046221 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKD-------VISWTRMMGLFVDFEYAGDAL 236 (572)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~li~~~~~~~~~~~a~ 236 (572)
|++++|...+....... +++...+. ++..+...++.++|...++.....+ ...|..+...+...|++++|.
T Consensus 158 ~~~~~A~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 235 (275)
T 1xnf_A 158 LDEKQAKEVLKQHFEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSAT 235 (275)
T ss_dssp HCHHHHHHHHHHHHHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHH
Confidence 88899998888877764 34444443 6666777777888888888776532 356777777888888888888
Q ss_pred HHHHHHHhCCCCCCccchHHHHHHhcccCChHHHHHH
Q 046221 237 KIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQL 273 (572)
Q Consensus 237 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 273 (572)
..|++..... |+. +.....++...|++++|...
T Consensus 236 ~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~ 268 (275)
T 1xnf_A 236 ALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDD 268 (275)
T ss_dssp HHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHH
Confidence 8888877642 322 22223344444555554443
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.55 E-value=1.4e-12 Score=116.64 Aligned_cols=197 Identities=11% Similarity=-0.015 Sum_probs=116.3
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 046221 317 LVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS 396 (572)
Q Consensus 317 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 396 (572)
...|..+...+...|++++|...|+++... .+.+...+..+...+...|+++.|.+.++.+.+.. +.+...+..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 113 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI--DPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHH
Confidence 456777777888888888888888887632 23345556666666666666666666666665543 334455555666
Q ss_pred HhhhcCChHHHHHHHHHc-C--CCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChH
Q 046221 397 SYSKCGNVDLAYIVFEEM-G--FLR-DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTN 472 (572)
Q Consensus 397 ~~~~~g~~~~A~~~~~~~-~--~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 472 (572)
.+...|++++|.+.++++ . ..| +...+..+...|...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHH
Confidence 666666666666666655 2 233 24445555555666666666666666655531 123455555666666666666
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC
Q 046221 473 DGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 473 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
+|..+++++++.. +.+...+..+...+.+.|++++|.+.++++..
T Consensus 193 ~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 193 PARQYYDLFAQGG--GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHHTTS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6666666654322 33444555555566666666666666666554
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.54 E-value=2.4e-12 Score=112.73 Aligned_cols=163 Identities=12% Similarity=-0.043 Sum_probs=81.1
Q ss_pred hhHHHHHHHHhhhcCChHHHHHHHHHc--CCCCCHhHHHHHHHHHHhc-CChHHHHHHHHHHHhcCCCCC-HHHHHHHHH
Q 046221 388 RSVQNCLISSYSKCGNVDLAYIVFEEM--GFLRDVVSWNTIIYGYGVN-GHGETALALYHKMTETGEVPD-SSTYLSILN 463 (572)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~ 463 (572)
...+..+...+...|++++|.+.++++ -.+.+...+..+...|... |++++|...++++.+.+..|+ ...+..+..
T Consensus 42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 121 (225)
T 2vq2_A 42 ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGI 121 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHH
Confidence 334444455555555555555555554 1112344455555555555 555555555555555222332 244555555
Q ss_pred HHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC--C-CChHHHHHHHHHHhhhcCCH
Q 046221 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE--G-MGPNIWRALLSGCVLHVGRF 540 (572)
Q Consensus 464 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~~l~~~~~~~~g~~ 540 (572)
++...|++++|+..++++++.. +.+...+..++.++.+.|++++|.+.++++.. + .+...+..+...+... |+.
T Consensus 122 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 198 (225)
T 2vq2_A 122 CSAKQGQFGLAEAYLKRSLAAQ--PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKAL-GNA 198 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT-TCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc-CcH
Confidence 5555555555555555554332 22344555555555555555555555555544 2 3333343333333333 555
Q ss_pred HHHHHHHHHHHhC
Q 046221 541 QDAEALRSGSQKK 553 (572)
Q Consensus 541 ~~A~~~~~~m~~~ 553 (572)
++|..+++.+.+.
T Consensus 199 ~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 199 QAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 5555555555443
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.53 E-value=2.2e-12 Score=115.22 Aligned_cols=196 Identities=11% Similarity=-0.031 Sum_probs=114.6
Q ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc--CCCCCHhHHHHHHHHHHh
Q 046221 355 TLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM--GFLRDVVSWNTIIYGYGV 432 (572)
Q Consensus 355 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~ 432 (572)
.+..+...+...|+++.|...++.+.+.. +.+...+..+...+...|++++|.+.++++ ..+.+...+..+...|..
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH
Confidence 44445555566666666666666665543 334555666666666666666666666665 222245556666666666
Q ss_pred cCChHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHH
Q 046221 433 NGHGETALALYHKMTETGEVPD-SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDAS 511 (572)
Q Consensus 433 ~~~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 511 (572)
.|++++|..+++++.+.+..|+ ...+..+...+...|++++|...++++++.. +.+...+..++.++...|++++|.
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHH
Confidence 6666666666666665333443 3555566666666666666666666665433 234555666666666666666666
Q ss_pred HHHHhccC--CCChHHHHHHHHHHhhhcCCHHHHHHHHHHHHhCC
Q 046221 512 GLAGKLLE--GMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKG 554 (572)
Q Consensus 512 ~~~~~~~~--~~~~~~~~~l~~~~~~~~g~~~~A~~~~~~m~~~~ 554 (572)
..++++.. +.+...+..+...+... |++++|.+.++++.+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 196 QYYDLFAQGGGQNARSLLLGIRLAKVF-EDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHC
Confidence 66666655 33344444444444444 66666666666665544
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.53 E-value=5.6e-12 Score=114.13 Aligned_cols=217 Identities=15% Similarity=0.017 Sum_probs=98.0
Q ss_pred chHHHHHHHHHhcCChhHHHHHHhccCCC-CcchHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCCCHhHHHHHHH
Q 046221 287 RLSNSIIAMYSKCGDLDSSRSVFNQITEK-SLVSWTAIISGYVQ----NGCAREALNQFIKMRQEKTDSVDSITLVSILT 361 (572)
Q Consensus 287 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~ 361 (572)
..+..+...+...|++++|...|++..++ +..++..+...|.. .+++++|+..|++.. ..+ +...+..+..
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~-~~~---~~~a~~~lg~ 82 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC-DLN---YSNGCHLLGN 82 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTT---CHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHH-HCC---CHHHHHHHHH
Confidence 34444555555555555555555554433 23344445555555 555555555555554 222 3344444444
Q ss_pred Hhcc----cccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhh----cCChHHHHHHHHHc-CCCCCHhHHHHHHHHHHh
Q 046221 362 ASGE----LAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK----CGNVDLAYIVFEEM-GFLRDVVSWNTIIYGYGV 432 (572)
Q Consensus 362 ~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~ 432 (572)
.+.. .+++++|...++...+.+ +...+..+...|.. .+++++|...+++. .. .+...+..+...|..
T Consensus 83 ~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~ 158 (273)
T 1ouv_A 83 LYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-NDGDGCTILGSLYDA 158 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-CcHHHHHHHHHHHHc
Confidence 4444 445555555544444432 33344444444444 44444444444444 11 123334444444444
Q ss_pred ----cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh-
Q 046221 433 ----NGHGETALALYHKMTETGEVPDSSTYLSILNACGH----AGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLAR- 503 (572)
Q Consensus 433 ----~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 503 (572)
.+++++|+..|++..+.+ +...+..+...|.. .+++++|+..++++++.. +...+..+..+|.+
T Consensus 159 ~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 159 GRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE----NGGGCFNLGAMQYNG 231 (273)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC----CHHHHHHHHHHHHcC
Confidence 444444444444444432 23334444444444 444444444444443221 13334444444444
Q ss_pred ---hCChhHHHHHHHhcc
Q 046221 504 ---AGCLSDASGLAGKLL 518 (572)
Q Consensus 504 ---~g~~~~A~~~~~~~~ 518 (572)
.+++++|.+.+++..
T Consensus 232 ~~~~~~~~~A~~~~~~a~ 249 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGC 249 (273)
T ss_dssp SSSSCCSTTHHHHHHHHH
T ss_pred CCcccCHHHHHHHHHHHH
Confidence 444444444444443
No 49
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.53 E-value=1.1e-12 Score=118.81 Aligned_cols=232 Identities=13% Similarity=-0.032 Sum_probs=183.8
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCc--hhHHHHHH
Q 046221 318 VSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRY--RSVQNCLI 395 (572)
Q Consensus 318 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~ 395 (572)
..+......+...|++++|+..|++..+.. +.+...+..+...+...|+++.|...++.+.+.+..++ ...|..+.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 345567788899999999999999997433 33445777888899999999999999999988432222 23478899
Q ss_pred HHhhhcCChHHHHHHHHHc--CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChH
Q 046221 396 SSYSKCGNVDLAYIVFEEM--GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNACGHAGLTN 472 (572)
Q Consensus 396 ~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~ 472 (572)
..+...|++++|...+++. ..+.+...|..+...|...|++++|+..+++..+. .| +...+..+...+...++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 23345678999999999999999999999999985 55 5577777773444556999
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCC---hhHHHHHHHhccC----CCCh------HHHHHHHHHHhhhcCC
Q 046221 473 DGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGC---LSDASGLAGKLLE----GMGP------NIWRALLSGCVLHVGR 539 (572)
Q Consensus 473 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~----~~~~------~~~~~l~~~~~~~~g~ 539 (572)
+|...++++++.. +.+...+..+..++...|+ +++|...++++.+ .|++ ..|..+...+... |+
T Consensus 160 ~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~ 236 (272)
T 3u4t_A 160 KADSSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN-RD 236 (272)
T ss_dssp HHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHc-CC
Confidence 9999999998654 4456788888899998898 8889999988776 2442 3566666666666 99
Q ss_pred HHHHHHHHHHHHhCCCC
Q 046221 540 FQDAEALRSGSQKKGII 556 (572)
Q Consensus 540 ~~~A~~~~~~m~~~~~~ 556 (572)
+++|.+.+++..+..+.
T Consensus 237 ~~~A~~~~~~al~~~p~ 253 (272)
T 3u4t_A 237 KVKADAAWKNILALDPT 253 (272)
T ss_dssp HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhcCcc
Confidence 99999999999876643
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.53 E-value=1.8e-13 Score=124.25 Aligned_cols=217 Identities=10% Similarity=-0.069 Sum_probs=125.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhh
Q 046221 320 WTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYS 399 (572)
Q Consensus 320 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 399 (572)
+..+...+...|++++|...|+++... .+.+...+..+...+...|+++.|...++.+.+.. +.+...+..+..++.
T Consensus 46 ~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~ 122 (275)
T 1xnf_A 46 LYERGVLYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY 122 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHH
Confidence 333444444444444444444444311 12233444444444455555555555555444432 334566667777777
Q ss_pred hcCChHHHHHHHHHc-CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 046221 400 KCGNVDLAYIVFEEM-GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIF 478 (572)
Q Consensus 400 ~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 478 (572)
..|++++|...++++ ...|+.......+..+...|++++|...+++.... .+++...+ .++..+...++.++|...+
T Consensus 123 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~a~~~~ 200 (275)
T 1xnf_A 123 YGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK-SDKEQWGW-NIVEFYLGNISEQTLMERL 200 (275)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-SCCCSTHH-HHHHHHTTSSCHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCcchHHH-HHHHHHHHhcCHHHHHHHH
Confidence 888888888888777 33344444444444556668888888888777764 23333333 3666677777788888888
Q ss_pred HHhHHhcCCCCC-----hhHHHHHHHHHHhhCChhHHHHHHHhccC-CCChHHHHHHHHHHhhhcCCHHHHHHHH
Q 046221 479 NQMIEENKVKPS-----QEHYGCVVDLLARAGCLSDASGLAGKLLE-GMGPNIWRALLSGCVLHVGRFQDAEALR 547 (572)
Q Consensus 479 ~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~g~~~~A~~~~ 547 (572)
+++++.. |+ ...+..++.+|.+.|++++|...++++.. .|+. +......+... |++++|++.+
T Consensus 201 ~~~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~l-~~~~~a~~~~ 269 (275)
T 1xnf_A 201 KADATDN---TSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN--FVEHRYALLEL-SLLGQDQDDL 269 (275)
T ss_dssp HHHCCSH---HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT--CHHHHHHHHHH-HHHHHC----
T ss_pred HHHhccc---ccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh--HHHHHHHHHHH-HHHHhhHHHH
Confidence 8775322 22 45777888888888888888888888876 4432 22222333334 7788877765
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.52 E-value=6.5e-13 Score=118.00 Aligned_cols=196 Identities=14% Similarity=0.075 Sum_probs=124.5
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 046221 318 VSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397 (572)
Q Consensus 318 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 397 (572)
..|..+...+...|++++|...|+++. . ..+.+...+..+...+...|+++.|...++.+.+.. +.+...+..+...
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l-~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAI-E-ENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp ------------------CCTTHHHHH-T-TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHH-H-hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 344555555666666666666666664 1 223345555555566666666666666666665543 3455666777777
Q ss_pred hhhcCChHHHHHHHHHc--CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHH
Q 046221 398 YSKCGNVDLAYIVFEEM--GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGL 475 (572)
Q Consensus 398 ~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~ 475 (572)
+...|++++|.+.++++ ..+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|+
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHH
Confidence 78888888888888777 222456677777788888888888888888887742 235677777888888888888888
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC
Q 046221 476 VIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
..++++++.. +.+..++..+..+|.+.|++++|.+.++++.+
T Consensus 180 ~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 180 SQFAAVTEQD--PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 8888887543 44566777888888888888888888888776
No 52
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.51 E-value=4.5e-12 Score=110.94 Aligned_cols=205 Identities=10% Similarity=-0.011 Sum_probs=151.7
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 046221 318 VSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISS 397 (572)
Q Consensus 318 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 397 (572)
..+..+...+...|++++|...++++... .+.+...+..+...+...|+++.|...++.+.+.. +.+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKS--DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 34555666666667777777777666522 22345566666666677777777777777666654 4456677778888
Q ss_pred hhhc-CChHHHHHHHHHc-C--CCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCCh
Q 046221 398 YSKC-GNVDLAYIVFEEM-G--FLRD-VVSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNACGHAGLT 471 (572)
Q Consensus 398 ~~~~-g~~~~A~~~~~~~-~--~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~ 471 (572)
+... |++++|...++++ . ..|+ ...+..+...+...|++++|+..++++.+. .| +...+..+...+...|++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCH
Confidence 8888 9999999999887 3 3343 567888888899999999999999998885 44 468888889999999999
Q ss_pred HHHHHHHHHhHHhcCCC-CChhHHHHHHHHHHhhCChhHHHHHHHhccC-CCChHHHHHH
Q 046221 472 NDGLVIFNQMIEENKVK-PSQEHYGCVVDLLARAGCLSDASGLAGKLLE-GMGPNIWRAL 529 (572)
Q Consensus 472 ~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l 529 (572)
++|..+++++++.. + .+...+..+...+...|+.++|..+++.+.. .|+......+
T Consensus 164 ~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 221 (225)
T 2vq2_A 164 GDADYYFKKYQSRV--EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTV 221 (225)
T ss_dssp HHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 99999999987654 3 4666777788888899999999999998875 5655544433
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.50 E-value=1.1e-12 Score=116.56 Aligned_cols=201 Identities=12% Similarity=0.018 Sum_probs=154.7
Q ss_pred CCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc--CCCCCHhHHHHHHH
Q 046221 351 VDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM--GFLRDVVSWNTIIY 428 (572)
Q Consensus 351 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~ 428 (572)
.....+..+...+...|+++.|...++.+.+.. +.+...+..+...+...|++++|...++++ ..+.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 345567777788899999999999999988754 556788888999999999999999999998 33346788899999
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChh
Q 046221 429 GYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLS 508 (572)
Q Consensus 429 ~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 508 (572)
.|...|++++|...++++.+.. +.+...+..+...+...|++++|...++++++.. +.+...+..++.++.+.|+++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999853 3466888999999999999999999999998654 456778999999999999999
Q ss_pred HHHHHHHhccC--CCChHHHHHHHHHHhhhcCCHHHHHHHHHHHHhCCCC
Q 046221 509 DASGLAGKLLE--GMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGII 556 (572)
Q Consensus 509 ~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~g~~~~A~~~~~~m~~~~~~ 556 (572)
+|.+.++++.. +.+..+|..+...+... |++++|...+++..+....
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~p~ 225 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYK-ENREKALEMLDKAIDIQPD 225 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHc-cCHHHHHHHHHHHHccCcc
Confidence 99999999877 44566788888878777 9999999999999876543
No 54
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.50 E-value=4.3e-13 Score=129.35 Aligned_cols=273 Identities=12% Similarity=0.005 Sum_probs=158.3
Q ss_pred cHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCc-----cchHHHHHHhcccCChHHHHHHHHHHHHhCCC-CCcchHHH
Q 046221 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDT-----VALLNLISVNAILGDLKRGKQLHAQVVLGGLQ-SELRLSNS 291 (572)
Q Consensus 218 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 291 (572)
.+......+...|++++|...|++..+.+ |+. ..+..+...+...|+++.|...++........ .+..
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---- 84 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL---- 84 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH----
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH----
Confidence 34455566666777777777777766542 221 23444555555566666666665554432100 0000
Q ss_pred HHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCC----HhHHHHHHHHhcccc
Q 046221 292 IIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVD----SITLVSILTASGELA 367 (572)
Q Consensus 292 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~ 367 (572)
....++..+...+...|++++|...+++........++ ..++..+...+...|
T Consensus 85 -----------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 141 (406)
T 3sf4_A 85 -----------------------GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG 141 (406)
T ss_dssp -----------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcC
Confidence 00123334444444455555555544444321111111 224444455555555
Q ss_pred c--------------------HHHHHHHHHHHHHh----cC-CCchhHHHHHHHHhhhcCChHHHHHHHHHc----CCCC
Q 046221 368 A--------------------LEICLQLHGIAFEA----GF-PRYRSVQNCLISSYSKCGNVDLAYIVFEEM----GFLR 418 (572)
Q Consensus 368 ~--------------------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~ 418 (572)
+ ++.|...++...+. +. +.....+..+...+...|++++|...+++. ...+
T Consensus 142 ~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 221 (406)
T 3sf4_A 142 KSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 221 (406)
T ss_dssp HTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC
Confidence 5 56666655544332 11 111345666777888888888888888776 1112
Q ss_pred C----HhHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC
Q 046221 419 D----VVSWNTIIYGYGVNGHGETALALYHKMTET----GEVPD-SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKP 489 (572)
Q Consensus 419 ~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 489 (572)
+ ..++..+...|...|++++|...+++..+. +..+. ..++..+...|...|++++|...++++++...-.+
T Consensus 222 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 301 (406)
T 3sf4_A 222 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN 301 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC
Confidence 2 336777788888888888888888887653 11111 35677788888888999999988888765421112
Q ss_pred C----hhHHHHHHHHHHhhCChhHHHHHHHhccC
Q 046221 490 S----QEHYGCVVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 490 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
+ ..++..+..+|.+.|++++|.+.+++..+
T Consensus 302 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 302 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 44677788888888999999888888765
No 55
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.49 E-value=1.5e-11 Score=111.35 Aligned_cols=225 Identities=10% Similarity=-0.042 Sum_probs=167.6
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcc----cccHHHHHHHHHHHHHhcCCCchhHH
Q 046221 316 SLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGE----LAALEICLQLHGIAFEAGFPRYRSVQ 391 (572)
Q Consensus 316 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 391 (572)
+..++..+...+...|++++|+..|++.. . +.+...+..+...+.. .+++++|...+++..+.+ +...+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~-~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKAC-D---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHH-H---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHH-H---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 34566677777888888888888888886 3 2344566667777777 888888888888887765 56677
Q ss_pred HHHHHHhhh----cCChHHHHHHHHHc-CCCCCHhHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 046221 392 NCLISSYSK----CGNVDLAYIVFEEM-GFLRDVVSWNTIIYGYGV----NGHGETALALYHKMTETGEVPDSSTYLSIL 462 (572)
Q Consensus 392 ~~l~~~~~~----~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 462 (572)
..+...|.. .+++++|...|++. .. .+...+..+...|.. .+++++|+..|++..+.+ +...+..+.
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 153 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDL-KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG 153 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHc-CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHH
Confidence 777788887 88888888888877 22 366777778888887 888888888888888754 556666777
Q ss_pred HHHhc----cCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----hCChhHHHHHHHhccCCCChHHHHHHHHHHh
Q 046221 463 NACGH----AGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLAR----AGCLSDASGLAGKLLEGMGPNIWRALLSGCV 534 (572)
Q Consensus 463 ~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~ 534 (572)
..|.. .+++++|+..|+++.+. .+...+..+..+|.. .+++++|.+.+++..+..++..+..+...+.
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~ 229 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQY 229 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 77776 78888888888888643 245667778888888 8888888888888776444666666666665
Q ss_pred h----hcCCHHHHHHHHHHHHhCCCC
Q 046221 535 L----HVGRFQDAEALRSGSQKKGII 556 (572)
Q Consensus 535 ~----~~g~~~~A~~~~~~m~~~~~~ 556 (572)
. . +++++|.+.+++..+.+..
T Consensus 230 ~g~~~~-~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 230 NGEGVT-RNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp TTSSSS-CCSTTHHHHHHHHHHHTCH
T ss_pred cCCCcc-cCHHHHHHHHHHHHHcCCH
Confidence 5 4 8888888888888776643
No 56
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.47 E-value=8e-13 Score=127.71 Aligned_cols=266 Identities=13% Similarity=0.015 Sum_probs=148.7
Q ss_pred chHHHHHHhcccCChHHHHHHHHHHHHhCCCCCc----chHHHHHHHHHhcCChhHHHHHHhccCCC---------Ccch
Q 046221 253 ALLNLISVNAILGDLKRGKQLHAQVVLGGLQSEL----RLSNSIIAMYSKCGDLDSSRSVFNQITEK---------SLVS 319 (572)
Q Consensus 253 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~ 319 (572)
.+..+...+...|++++|...++.+.+.... +. .++..+...|...|++++|...+++..+. ...+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3444556677888888888888888876422 22 35677777888888888888887765421 1245
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCC----CCCCHhHHHHHHHHhccccc-----------------HHHHHHHHHH
Q 046221 320 WTAIISGYVQNGCAREALNQFIKMRQEKT----DSVDSITLVSILTASGELAA-----------------LEICLQLHGI 378 (572)
Q Consensus 320 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~ll~~~~~~~~-----------------~~~a~~~~~~ 378 (572)
+..+...|...|++++|...+++...... .+....++..+...+...|+ ++.|...++.
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 66677777788888888888877653211 11122355555556666666 6666666555
Q ss_pred HHHh----cCC-CchhHHHHHHHHhhhcCChHHHHHHHHHc-CCC---CC----HhHHHHHHHHHHhcCChHHHHHHHHH
Q 046221 379 AFEA----GFP-RYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFL---RD----VVSWNTIIYGYGVNGHGETALALYHK 445 (572)
Q Consensus 379 ~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~---~~----~~~~~~l~~~~~~~~~~~~A~~~~~~ 445 (572)
..+. +.. .....+..+...+...|++++|...+++. ... ++ ...+..+...|...|++++|...+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 4332 111 11234455555566666666666666555 110 11 12455555556666666666666655
Q ss_pred HHhcCCC-C----CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhhCChhHHHHHHHh
Q 046221 446 MTETGEV-P----DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPS----QEHYGCVVDLLARAGCLSDASGLAGK 516 (572)
Q Consensus 446 ~~~~g~~-p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 516 (572)
..+.... . ...++..+...+...|++++|..+++++++...-.++ ..++..+..+|.+.|++++|.+.+++
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 5442100 0 1244555555566666666666666655432110011 22455555556666666666666665
Q ss_pred ccC
Q 046221 517 LLE 519 (572)
Q Consensus 517 ~~~ 519 (572)
+..
T Consensus 369 al~ 371 (411)
T 4a1s_A 369 HLQ 371 (411)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 57
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.46 E-value=1.4e-12 Score=122.06 Aligned_cols=131 Identities=10% Similarity=-0.012 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC----hh
Q 046221 422 SWNTIIYGYGVNGHGETALALYHKMTET----GEVP-DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPS----QE 492 (572)
Q Consensus 422 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~ 492 (572)
.+..+...|...|++++|...+++..+. +..+ ...++..+...+...|++++|...++++++...-.++ ..
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 3444444455555555555555444331 0000 1124445555555555555555555554432110111 23
Q ss_pred HHHHHHHHHHhhCChhHHHHHHHhccC----CCC----hHHHHHHHHHHhhhcCCHHHHHHHHHHHHhC
Q 046221 493 HYGCVVDLLARAGCLSDASGLAGKLLE----GMG----PNIWRALLSGCVLHVGRFQDAEALRSGSQKK 553 (572)
Q Consensus 493 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~~l~~~~~~~~g~~~~A~~~~~~m~~~ 553 (572)
++..+..++...|++++|...++++.. ..+ ..++..+...+... |++++|...+++..+.
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL-GNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHH
Confidence 445555555555666655555555443 111 12344444444444 6666666666665543
No 58
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.46 E-value=7.3e-12 Score=117.82 Aligned_cols=227 Identities=9% Similarity=0.000 Sum_probs=142.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhccccc-HHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 046221 319 SWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAA-LEICLQLHGIAFEAGFPRYRSVQNCLISS 397 (572)
Q Consensus 319 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 397 (572)
.|..+...+.+.|++++|+..++++... .+-+...+..+...+...|+ +++|...++++.+.. +.+...|..+..+
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 4555555566666666666666666422 22234455555555666664 666666666666654 4456667777777
Q ss_pred hhhcCChHHHHHHHHHc-C-CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhc-cCChHH
Q 046221 398 YSKCGNVDLAYIVFEEM-G-FLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNACGH-AGLTND 473 (572)
Q Consensus 398 ~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~-~g~~~~ 473 (572)
+...|++++|+..|+++ . .+-+...|..+..++.+.|++++|+..++++++. .| +...|..+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchH
Confidence 77777777777777777 2 2235667777777777777777777777777773 45 44677777777777 555466
Q ss_pred H-----HHHHHHhHHhcCCCCChhHHHHHHHHHHhhC--ChhHHHHHHHhccC-CCChHHHHHHHHHHhhhcC-------
Q 046221 474 G-----LVIFNQMIEENKVKPSQEHYGCVVDLLARAG--CLSDASGLAGKLLE-GMGPNIWRALLSGCVLHVG------- 538 (572)
Q Consensus 474 a-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~g------- 538 (572)
| +..++++++.. +-+...|..+..++.+.| ++++|.+.+.++.. +.++..+..+...+... |
T Consensus 254 A~~~~el~~~~~Al~l~--P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~-~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLV--PHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDM-LENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHH-HHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHH-hcccccch
Confidence 6 46777776543 334556777777777766 57777777777722 33344555555555443 2
Q ss_pred --CHHHHHHHHHHH-HhC
Q 046221 539 --RFQDAEALRSGS-QKK 553 (572)
Q Consensus 539 --~~~~A~~~~~~m-~~~ 553 (572)
..++|+++++++ .+.
T Consensus 331 ~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 331 EDILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 247777777776 443
No 59
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.45 E-value=7.6e-12 Score=117.69 Aligned_cols=239 Identities=13% Similarity=0.053 Sum_probs=170.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHhccCC---CCcchHHHHHHHHHHcCC-hHHHHHHHHHHHhcCCCCCCHhHHHHHHHHh
Q 046221 288 LSNSIIAMYSKCGDLDSSRSVFNQITE---KSLVSWTAIISGYVQNGC-AREALNQFIKMRQEKTDSVDSITLVSILTAS 363 (572)
Q Consensus 288 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~ 363 (572)
.+..+...+.+.|++++|+..|+++.. .+...|+.+..++...|+ +++|+..|++.... .+-+...|..+...+
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHH
Confidence 344555556666666666666666552 234566666666777775 77777777776522 223455666666666
Q ss_pred cccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc-CCC-CCHhHHHHHHHHHHh-cCChHHH-
Q 046221 364 GELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFL-RDVVSWNTIIYGYGV-NGHGETA- 439 (572)
Q Consensus 364 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~-~~~~~~A- 439 (572)
...|++++|...++++.+.. +.+...|..+..++.+.|++++|+..++++ ... -+...|+.+..++.. .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAV 255 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHH
Confidence 77777777777777777664 556778888888999999999999999988 333 457889999889888 6665777
Q ss_pred ----HHHHHHHHhcCCCC-CHHHHHHHHHHHhccC--ChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhC-------
Q 046221 440 ----LALYHKMTETGEVP-DSSTYLSILNACGHAG--LTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAG------- 505 (572)
Q Consensus 440 ----~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------- 505 (572)
+..+++.++ +.| +...|..+...+...| ++++|++.++++ +. .+.+...+..++.+|.+.|
T Consensus 256 ~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~--~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 256 LEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP--SHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT--TCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc--CCCCHHHHHHHHHHHHHHhcccccch
Confidence 588988888 467 4578888888898888 689999999887 32 2456678889999998874
Q ss_pred --ChhHHHHHHHhc-cC-CCCh-HHHHHHHHHHh
Q 046221 506 --CLSDASGLAGKL-LE-GMGP-NIWRALLSGCV 534 (572)
Q Consensus 506 --~~~~A~~~~~~~-~~-~~~~-~~~~~l~~~~~ 534 (572)
..++|.++++++ .+ +|.. ..|..+...+.
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 258999999999 55 5543 45665555543
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.44 E-value=2e-12 Score=124.84 Aligned_cols=264 Identities=12% Similarity=0.042 Sum_probs=157.6
Q ss_pred cHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCc-----cchHHHHHHhcccCChHHHHHHHHHHHHhC-----CCCCcc
Q 046221 218 SWTRMMGLFVDFEYAGDALKIFREMRKSRIICDT-----VALLNLISVNAILGDLKRGKQLHAQVVLGG-----LQSELR 287 (572)
Q Consensus 218 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~ 287 (572)
.+..+...+...|++++|...|++..+.+ |+. ..+..+...+...|+++.|...+++..... .+....
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 34445566677777777777777776652 322 245556666667777777777777665531 122234
Q ss_pred hHHHHHHHHHhcCChhHHHHHHhccCCC---------CcchHHHHHHHHHHcCC-----------------hHHHHHHHH
Q 046221 288 LSNSIIAMYSKCGDLDSSRSVFNQITEK---------SLVSWTAIISGYVQNGC-----------------AREALNQFI 341 (572)
Q Consensus 288 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~ 341 (572)
++..+...|...|++++|...+++..+. ...++..+...|...|+ +++|+..++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 5566666777777777777777665421 12356666667777777 777777776
Q ss_pred HHHhcC---CC-CCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCC-Cc----hhHHHHHHHHhhhcCChHHHHHHHH
Q 046221 342 KMRQEK---TD-SVDSITLVSILTASGELAALEICLQLHGIAFEAGFP-RY----RSVQNCLISSYSKCGNVDLAYIVFE 412 (572)
Q Consensus 342 ~~~~~~---~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~ 412 (572)
+..... +. .....++..+...+...|+++.|...++...+.... .+ ...+..+..+|...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 654211 11 112235556666667777777777777666543211 11 2255666677777777777777777
Q ss_pred Hc-----CCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcC----CCCC-HHHHHHHHHHHhccCChHHHHHHHH
Q 046221 413 EM-----GFL---RDVVSWNTIIYGYGVNGHGETALALYHKMTETG----EVPD-SSTYLSILNACGHAGLTNDGLVIFN 479 (572)
Q Consensus 413 ~~-----~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g----~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~ 479 (572)
+. ... ....++..+...|...|++++|...+++..+.. ..+. ..++..+...|...|++++|...++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 66 110 113456666677777777777777777766521 1111 2356666677777777777777777
Q ss_pred HhHH
Q 046221 480 QMIE 483 (572)
Q Consensus 480 ~~~~ 483 (572)
++++
T Consensus 368 ~al~ 371 (411)
T 4a1s_A 368 QHLQ 371 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
No 61
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.43 E-value=3.4e-12 Score=124.95 Aligned_cols=209 Identities=13% Similarity=0.031 Sum_probs=161.7
Q ss_pred hHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccH-HHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHH
Q 046221 333 AREALNQFIKMRQEKTDSVDSITLVSILTASGELAAL-EICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVF 411 (572)
Q Consensus 333 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 411 (572)
+++++..+++.. ...+.+...+..+...+...|++ ++|...++...+.. +.+...+..+..+|.+.|++++|.+.|
T Consensus 84 ~~~al~~l~~~~--~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 84 MEKTLQQMEEVL--GSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHH--TTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHh--ccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 455666666553 33344667777777788888888 88888888877764 455778888888999999999999999
Q ss_pred HHc-CCCCCHhHHHHHHHHHHhc---------CChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhcc--------CChH
Q 046221 412 EEM-GFLRDVVSWNTIIYGYGVN---------GHGETALALYHKMTETGEVP-DSSTYLSILNACGHA--------GLTN 472 (572)
Q Consensus 412 ~~~-~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~--------g~~~ 472 (572)
++. ...|+...+..+...|... |++++|+..|++..+. .| +...|..+..+|... |+++
T Consensus 161 ~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 161 SGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 888 6668878888888888888 8999999999998884 55 467888888888888 8899
Q ss_pred HHHHHHHHhHHhcCCC---CChhHHHHHHHHHHhhCChhHHHHHHHhccC-CC-ChHHHHHHHHHHhhhcCCHHHHHHHH
Q 046221 473 DGLVIFNQMIEENKVK---PSQEHYGCVVDLLARAGCLSDASGLAGKLLE-GM-GPNIWRALLSGCVLHVGRFQDAEALR 547 (572)
Q Consensus 473 ~a~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~g~~~~A~~~~ 547 (572)
+|+..|+++++.. + .+...+..+..+|...|++++|.+.|+++.. .| +...+..+...+... |++++|++.+
T Consensus 239 ~A~~~~~~al~~~--p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~l-g~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEKVD--RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFL-SRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHC--GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-HHHHHHHHHT
T ss_pred HHHHHHHHHHHhC--CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 9999999987643 2 3677888899999999999999999998877 44 445666666666655 8888887654
Q ss_pred HH
Q 046221 548 SG 549 (572)
Q Consensus 548 ~~ 549 (572)
++
T Consensus 316 ~~ 317 (474)
T 4abn_A 316 GK 317 (474)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 62
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.42 E-value=1.9e-09 Score=108.41 Aligned_cols=422 Identities=10% Similarity=0.016 Sum_probs=258.0
Q ss_pred HHHHHHHHHHHhcCCCCcccCCCCCCceeHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCC---
Q 046221 89 LARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS--- 165 (572)
Q Consensus 89 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~--- 165 (572)
.....++..+...+ .|...|..++..+.+.+.++.+..+|+.+... .+.+...|..-+..-.+.++
T Consensus 50 d~i~~lE~~l~~np----------~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~ 118 (679)
T 4e6h_A 50 DVIGKLNDMIEEQP----------TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELD 118 (679)
T ss_dssp CHHHHHHHHHHHCT----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCC
T ss_pred HHHHHHHHHHHHCc----------CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcch
Confidence 34445566666654 56788999999999999999999999999876 34456677777777777788
Q ss_pred hHHHHHHHHHHHHhc-CCCChhHHhHHHHHHHhCCCH--------HHHHHHHhhcC------CC-CcccHHHHHHHHHc-
Q 046221 166 RALCELIHGLTIKLG-LILDVSVNNSVLDMYSCLMDL--------DAAIQIFREME------CK-DVISWTRMMGLFVD- 228 (572)
Q Consensus 166 ~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~------~~-~~~~~~~li~~~~~- 228 (572)
++.+..+|+..+... .+|++..|...+....+.++. +...++|+... .+ +...|...+.....
T Consensus 119 ~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~ 198 (679)
T 4e6h_A 119 AAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHW 198 (679)
T ss_dssp HHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhc
Confidence 999999999888754 247888888777766554443 22335665432 12 33566666655432
Q ss_pred --------cCCHHHHHHHHHHHHhCCCCCCc---cchH---HHHHHhcccCChHHHHHHHHHHHHhCCCCCcchHHHHHH
Q 046221 229 --------FEYAGDALKIFREMRKSRIICDT---VALL---NLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIA 294 (572)
Q Consensus 229 --------~~~~~~a~~~~~~m~~~~~~p~~---~~~~---~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 294 (572)
+++++.+..+|++.... |.. .+|. ...... +. ..+.+++.+.
T Consensus 199 ~~~~~~eeq~~~~~~R~iy~raL~i---P~~~~~~~w~~Y~~fe~~~---~~-~~a~~~~~e~----------------- 254 (679)
T 4e6h_A 199 KPVNKFEEQQRVQYIRKLYKTLLCQ---PMDCLESMWQRYTQWEQDV---NQ-LTARRHIGEL----------------- 254 (679)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHTTS---CCSSHHHHHHHHHHHHHHH---CT-TTHHHHHHHH-----------------
T ss_pred cccCcHHHHhHHHHHHHHHHHHHhC---ccHHHHHHHHHHHHHHHhc---Cc-chHHHHHHHh-----------------
Confidence 33466777888887742 221 1111 111110 00 0011111110
Q ss_pred HHHhcCChhHHHHHHhc-------cCC--------------C--C------cchHHHHHHHHHHcC-------ChHHHHH
Q 046221 295 MYSKCGDLDSSRSVFNQ-------ITE--------------K--S------LVSWTAIISGYVQNG-------CAREALN 338 (572)
Q Consensus 295 ~~~~~~~~~~a~~~~~~-------~~~--------------~--~------~~~~~~l~~~~~~~~-------~~~~a~~ 338 (572)
..+++.|...+.+ +.. | + ...|...+.---..+ ..+.+..
T Consensus 255 ----~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~ 330 (679)
T 4e6h_A 255 ----SAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTY 330 (679)
T ss_dssp ----HHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHH
Confidence 0111112222211 100 0 0 023333333222221 1234456
Q ss_pred HHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHH-HHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc-CC
Q 046221 339 QFIKMRQEKTDSVDSITLVSILTASGELAALEICL-QLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GF 416 (572)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 416 (572)
+|++.... .+-....|.....-+...|+.+.|. .+++..... .|.+...+-.++....+.|+++.|.++|+++ ..
T Consensus 331 ~Ye~aL~~--~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~ 407 (679)
T 4e6h_A 331 VYMQAAQH--VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDR 407 (679)
T ss_dssp HHHHHHHH--TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 67777533 3335556666666666677777786 888888763 4556666777788888888888888888877 21
Q ss_pred -----------CCC------------HhHHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhcc-CCh
Q 046221 417 -----------LRD------------VVSWNTIIYGYGVNGHGETALALYHKMTET-GEVPDSSTYLSILNACGHA-GLT 471 (572)
Q Consensus 417 -----------~~~------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~-g~~ 471 (572)
.|+ ...|...+....+.|+.+.|..+|.++++. + .+....|...+..-.+. ++.
T Consensus 408 l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~ 486 (679)
T 4e6h_A 408 IHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDT 486 (679)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCC
T ss_pred HHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCH
Confidence 132 235777777777888899999999998875 1 11223333333222333 458
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC-CC----ChHHHHHHHHHHhhhcCCHHHHHHH
Q 046221 472 NDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE-GM----GPNIWRALLSGCVLHVGRFQDAEAL 546 (572)
Q Consensus 472 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~----~~~~~~~l~~~~~~~~g~~~~A~~~ 546 (572)
+.|..+|+.+++.. +-+...+..+++.....|+.+.|..+|+++.. .| ....|...+.--..+ |+.+.+..+
T Consensus 487 e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~-G~~~~~~~v 563 (679)
T 4e6h_A 487 KTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKV-GSLNSVRTL 563 (679)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHT-CCSHHHHHH
T ss_pred HHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 89999999988764 44566777888888888999999999998887 33 234577777666666 999999999
Q ss_pred HHHHHhCCCC
Q 046221 547 RSGSQKKGII 556 (572)
Q Consensus 547 ~~~m~~~~~~ 556 (572)
.+++.+.-+.
T Consensus 564 ~~R~~~~~P~ 573 (679)
T 4e6h_A 564 EKRFFEKFPE 573 (679)
T ss_dssp HHHHHHHSTT
T ss_pred HHHHHHhCCC
Confidence 9998877654
No 63
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.42 E-value=3.1e-09 Score=106.85 Aligned_cols=149 Identities=7% Similarity=-0.022 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHcCCCCCcchHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCcccCCCCCCceeHHHHHHHHHhCCC---
Q 046221 54 KSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKL--- 130 (572)
Q Consensus 54 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--- 130 (572)
+.+..|++.+..+ +-|..+|..++..+.+.+.++.+..+++.++..-+ .....|...+..-.+.|+
T Consensus 50 d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP----------~~~~lW~~Yi~~E~~~~~~~~ 118 (679)
T 4e6h_A 50 DVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFP----------LMANIWCMRLSLEFDKMEELD 118 (679)
T ss_dssp CHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------TCHHHHHHHHHHHHTC--CCC
T ss_pred HHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCC----------CCHHHHHHHHHHHHhhCCcch
Confidence 3444444444443 44556666666666666666666666666666543 233455555555556666
Q ss_pred hHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHhccCCh--------HHHHHHHHHHHH-hcC-CCC-hhHHhHHHHHHHh-
Q 046221 131 FQQAVLLFNFFRGSG-LVPNAVTMLTVIRGCVALGSR--------ALCELIHGLTIK-LGL-ILD-VSVNNSVLDMYSC- 197 (572)
Q Consensus 131 ~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~~- 197 (572)
++.+..+|++..... ..|+...|..-+....+.++. +.+.++|+..+. .|. .++ ...|...+.....
T Consensus 119 ~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~ 198 (679)
T 4e6h_A 119 AAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHW 198 (679)
T ss_dssp HHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhc
Confidence 666666666666542 125555555544443333322 223345554443 243 332 3455555544321
Q ss_pred --------CCCHHHHHHHHhhcCC
Q 046221 198 --------LMDLDAAIQIFREMEC 213 (572)
Q Consensus 198 --------~~~~~~a~~~~~~~~~ 213 (572)
.++++.+..+|+....
T Consensus 199 ~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 199 KPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred cccCcHHHHhHHHHHHHHHHHHHh
Confidence 2235556666666554
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.42 E-value=8.2e-12 Score=116.81 Aligned_cols=266 Identities=15% Similarity=0.027 Sum_probs=203.3
Q ss_pred hHHHHHHhcccCChHHHHHHHHHHHHhCCCCC---cchHHHHHHHHHhcCChhHHHHHHhccCC-----C----CcchHH
Q 046221 254 LLNLISVNAILGDLKRGKQLHAQVVLGGLQSE---LRLSNSIIAMYSKCGDLDSSRSVFNQITE-----K----SLVSWT 321 (572)
Q Consensus 254 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~----~~~~~~ 321 (572)
+......+...|++++|...++.+.+...... ...+..+...+...|++++|...+++..+ + ...++.
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 34455677889999999999999998753211 35677889999999999999999987642 1 235678
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCCC----HhHHHHHHHHhccccc--------------------HHHHHHHHH
Q 046221 322 AIISGYVQNGCAREALNQFIKMRQEKTDSVD----SITLVSILTASGELAA--------------------LEICLQLHG 377 (572)
Q Consensus 322 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~--------------------~~~a~~~~~ 377 (572)
.+...+...|++++|...+++........++ ..++..+...+...|+ ++.|...++
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 8889999999999999999987643332233 3377778888889999 999999987
Q ss_pred HHHHh----cCC-CchhHHHHHHHHhhhcCChHHHHHHHHHc----CCCCC----HhHHHHHHHHHHhcCChHHHHHHHH
Q 046221 378 IAFEA----GFP-RYRSVQNCLISSYSKCGNVDLAYIVFEEM----GFLRD----VVSWNTIIYGYGVNGHGETALALYH 444 (572)
Q Consensus 378 ~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~ 444 (572)
..... +.. .....+..+...+...|++++|...+++. ...++ ..++..+...+...|++++|...++
T Consensus 168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 247 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 76543 211 12346778888999999999999999987 11122 3377888889999999999999999
Q ss_pred HHHhcCC-CCC----HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhhCChhHHHHHHH
Q 046221 445 KMTETGE-VPD----SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPS----QEHYGCVVDLLARAGCLSDASGLAG 515 (572)
Q Consensus 445 ~~~~~g~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~ 515 (572)
+..+... .++ ..++..+...+...|++++|...++++++...-..+ ..++..+..+|.+.|++++|.+.++
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (338)
T 3ro2_A 248 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 327 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 9876311 111 467788889999999999999999998754311112 3477889999999999999999999
Q ss_pred hccC
Q 046221 516 KLLE 519 (572)
Q Consensus 516 ~~~~ 519 (572)
++..
T Consensus 328 ~a~~ 331 (338)
T 3ro2_A 328 KHLE 331 (338)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8864
No 65
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.42 E-value=1e-11 Score=119.67 Aligned_cols=263 Identities=11% Similarity=0.001 Sum_probs=184.7
Q ss_pred HHHHHHHHhcCChhHHHHHHhccCC--C-C----cchHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCCC-CHhHHHH
Q 046221 290 NSIIAMYSKCGDLDSSRSVFNQITE--K-S----LVSWTAIISGYVQNGCAREALNQFIKMRQE---KTDSV-DSITLVS 358 (572)
Q Consensus 290 ~~l~~~~~~~~~~~~a~~~~~~~~~--~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~-~~~~~~~ 358 (572)
......+...|++++|...|++..+ | + ...+..+...+...|++++|...+++.... .+..| ....+..
T Consensus 13 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 92 (406)
T 3sf4_A 13 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 92 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 3344455555555555555555432 1 1 134556666777777777777777765422 12222 2446777
Q ss_pred HHHHhcccccHHHHHHHHHHHHHhcCC-C----chhHHHHHHHHhhhcCC--------------------hHHHHHHHHH
Q 046221 359 ILTASGELAALEICLQLHGIAFEAGFP-R----YRSVQNCLISSYSKCGN--------------------VDLAYIVFEE 413 (572)
Q Consensus 359 ll~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~ 413 (572)
+...+...|+++.|...++...+.... + ....+..+...|...|+ +++|...+++
T Consensus 93 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 172 (406)
T 3sf4_A 93 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEE 172 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 788889999999999999877654211 1 14477888889999999 9999998887
Q ss_pred c-------CCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHhccCChHHHHHHHHH
Q 046221 414 M-------GFLR-DVVSWNTIIYGYGVNGHGETALALYHKMTETGE-VPD----SSTYLSILNACGHAGLTNDGLVIFNQ 480 (572)
Q Consensus 414 ~-------~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~ 480 (572)
. +..| ...++..+...|...|++++|...+++..+..- .++ ..++..+...+...|++++|...+++
T Consensus 173 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 252 (406)
T 3sf4_A 173 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 252 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 6 2112 245678888999999999999999999876310 122 24788889999999999999999998
Q ss_pred hHHhcCCCCC----hhHHHHHHHHHHhhCChhHHHHHHHhccC----CCC----hHHHHHHHHHHhhhcCCHHHHHHHHH
Q 046221 481 MIEENKVKPS----QEHYGCVVDLLARAGCLSDASGLAGKLLE----GMG----PNIWRALLSGCVLHVGRFQDAEALRS 548 (572)
Q Consensus 481 ~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~~l~~~~~~~~g~~~~A~~~~~ 548 (572)
+++...-.++ ..++..+...|...|++++|.+.++++.. .++ ..++..+...+... |++++|...++
T Consensus 253 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~ 331 (406)
T 3sf4_A 253 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTAL-GNHDQAMHFAE 331 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHH
T ss_pred HHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 8754311122 45788899999999999999999998876 222 33566677777666 99999999999
Q ss_pred HHHhC
Q 046221 549 GSQKK 553 (572)
Q Consensus 549 ~m~~~ 553 (572)
+..+.
T Consensus 332 ~al~~ 336 (406)
T 3sf4_A 332 KHLEI 336 (406)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87643
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.40 E-value=4.3e-11 Score=114.24 Aligned_cols=230 Identities=9% Similarity=-0.014 Sum_probs=166.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCCC----HhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCC------chhHHH
Q 046221 323 IISGYVQNGCAREALNQFIKMRQEKTDSVD----SITLVSILTASGELAALEICLQLHGIAFEAGFPR------YRSVQN 392 (572)
Q Consensus 323 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~ 392 (572)
....+...|++++|+..+++........++ ..++..+...+...|+++.|...+....+..... ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445566778888888888877633222222 3466677777788888888888887766542111 234677
Q ss_pred HHHHHhhhcCChHHHHHHHHHc----CCCCC----HhHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCCC-HHHHH
Q 046221 393 CLISSYSKCGNVDLAYIVFEEM----GFLRD----VVSWNTIIYGYGVNGHGETALALYHKMTET----GEVPD-SSTYL 459 (572)
Q Consensus 393 ~l~~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----g~~p~-~~~~~ 459 (572)
.+..+|...|++++|...+++. ...++ ..++..+...|...|++++|+..+++..+. +..|+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8888999999999999999887 11122 247888899999999999999999998772 23244 47888
Q ss_pred HHHHHHhccCChHHHHHHHHHhHHhcC---CCCChhHHHHHHHHHHhhCC---hhHHHHHHHhccCCCC-hHHHHHHHHH
Q 046221 460 SILNACGHAGLTNDGLVIFNQMIEENK---VKPSQEHYGCVVDLLARAGC---LSDASGLAGKLLEGMG-PNIWRALLSG 532 (572)
Q Consensus 460 ~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~l~~~ 532 (572)
.+...+.+.|++++|...++++++... -+.....+..+...+...|+ .++|..++++....|+ ...+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 999999999999999999998875421 11122345678888889998 8999999998865333 3355666666
Q ss_pred HhhhcCCHHHHHHHHHHHHhC
Q 046221 533 CVLHVGRFQDAEALRSGSQKK 553 (572)
Q Consensus 533 ~~~~~g~~~~A~~~~~~m~~~ 553 (572)
+... |++++|...+++..+.
T Consensus 349 y~~~-g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 349 YHER-KNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHC-CCHHHHHHHHHHHHHH
Confidence 6666 9999999999998653
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.40 E-value=3.1e-11 Score=101.89 Aligned_cols=125 Identities=10% Similarity=0.024 Sum_probs=52.2
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHc--CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHh
Q 046221 390 VQNCLISSYSKCGNVDLAYIVFEEM--GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNACG 466 (572)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~ 466 (572)
.+..+..+|.+.|++++|...+... ..+.+...+..+...+...++++.|...+.+..+. .| +...+..+...+.
T Consensus 41 ~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~ 118 (184)
T 3vtx_A 41 TLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYD 118 (184)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHH
Confidence 3333444444444444444444443 11122333333344444444444444444444442 22 2334444444444
Q ss_pred ccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhcc
Q 046221 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518 (572)
Q Consensus 467 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 518 (572)
+.|++++|++.|+++++.. +.+...+..+..+|.+.|++++|.+.|+++.
T Consensus 119 ~~g~~~~A~~~~~~~l~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 168 (184)
T 3vtx_A 119 SMGEHDKAIEAYEKTISIK--PGFIRAYQSIGLAYEGKGLRDEAVKYFKKAL 168 (184)
T ss_dssp HTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhCCchhHHHHHHHHHHhc--chhhhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4444444444444444322 2233344444444444444444444444443
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.40 E-value=4e-11 Score=101.19 Aligned_cols=165 Identities=12% Similarity=-0.017 Sum_probs=141.5
Q ss_pred CchhHHHHHHHHhhhcCChHHHHHHHHHc-CCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHH
Q 046221 386 RYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFLR-DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSIL 462 (572)
Q Consensus 386 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~ 462 (572)
.+..+|..+...|.+.|++++|++.|++. ...| +...|..+..+|.+.|++++|...+.+.... .| +...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 35677888999999999999999999998 3334 5788999999999999999999999999885 44 557788888
Q ss_pred HHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC--CCChHHHHHHHHHHhhhcCCH
Q 046221 463 NACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE--GMGPNIWRALLSGCVLHVGRF 540 (572)
Q Consensus 463 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~g~~ 540 (572)
..+...++++.|...++++++.. +.+...+..+..+|.+.|++++|++.++++.+ +.++.+|..+...+... |++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~-g~~ 157 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN--TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGK-GLR 157 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHC-CCH
Confidence 89999999999999999997654 55677899999999999999999999999887 45666788888888777 999
Q ss_pred HHHHHHHHHHHhCCC
Q 046221 541 QDAEALRSGSQKKGI 555 (572)
Q Consensus 541 ~~A~~~~~~m~~~~~ 555 (572)
++|++.|++..+..+
T Consensus 158 ~~A~~~~~~al~~~p 172 (184)
T 3vtx_A 158 DEAVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHhCCc
Confidence 999999999987654
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.39 E-value=1.1e-10 Score=107.43 Aligned_cols=182 Identities=8% Similarity=-0.016 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc-CCCCC-Hh-HHHHHHHHHHhcCChHHHHHHHHHH
Q 046221 370 EICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFLRD-VV-SWNTIIYGYGVNGHGETALALYHKM 446 (572)
Q Consensus 370 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~-~~~~l~~~~~~~~~~~~A~~~~~~~ 446 (572)
++|..++++..+.-.+.+...|..++..+.+.|++++|..+|++. ...|+ .. .|..++..+.+.|++++|..+|++.
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 444444444443211223334444555555555555555555554 33332 11 4555555555555555555555555
Q ss_pred HhcCCCCCHHHHHHHHHHH-hccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC----CC
Q 046221 447 TETGEVPDSSTYLSILNAC-GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE----GM 521 (572)
Q Consensus 447 ~~~g~~p~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~ 521 (572)
.+.. +++...|....... ...|++++|..+|+++++.. +-+...|..++..+.+.|++++|..+|+++.. +|
T Consensus 161 ~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 161 REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 5421 11222222222211 12455555555555554433 22344455555555555555555555555443 11
Q ss_pred --ChHHHHHHHHHHhhhcCCHHHHHHHHHHHHhCCC
Q 046221 522 --GPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGI 555 (572)
Q Consensus 522 --~~~~~~~l~~~~~~~~g~~~~A~~~~~~m~~~~~ 555 (572)
....|..++...... |+.++|..+++++.+..+
T Consensus 238 ~~~~~l~~~~~~~~~~~-g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 238 EKSGEIWARFLAFESNI-GDLASILKVEKRRFTAFR 272 (308)
T ss_dssp GGCHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHcc
Confidence 122344444444444 555555555555544433
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.35 E-value=4.2e-10 Score=103.58 Aligned_cols=212 Identities=10% Similarity=0.071 Sum_probs=137.4
Q ss_pred hHHHHHHhccCC---CCcchHHHHHHHHH-------HcCCh-------HHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcc
Q 046221 303 DSSRSVFNQITE---KSLVSWTAIISGYV-------QNGCA-------REALNQFIKMRQEKTDSVDSITLVSILTASGE 365 (572)
Q Consensus 303 ~~a~~~~~~~~~---~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 365 (572)
++|..+|++... .+...|..++..+. +.|++ ++|..+|++.. ..-.+-+...+..+...+..
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl-~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAI-STLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHH-TTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHH-HHhCcccHHHHHHHHHHHHh
Confidence 344445554442 23345555544443 24554 67777777765 21122334466666666667
Q ss_pred cccHHHHHHHHHHHHHhcCCCc-hh-HHHHHHHHhhhcCChHHHHHHHHHc-CCCC-CHhHHHHHHHHH-HhcCChHHHH
Q 046221 366 LAALEICLQLHGIAFEAGFPRY-RS-VQNCLISSYSKCGNVDLAYIVFEEM-GFLR-DVVSWNTIIYGY-GVNGHGETAL 440 (572)
Q Consensus 366 ~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~-~~~~~~~~A~ 440 (572)
.|+++.|..+|+++.+. .|+ .. .|..++..+.+.|++++|..+|++. ...| +...|....... ...|++++|.
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777776653 333 33 6777778888888888888888887 3323 334443333222 2368888888
Q ss_pred HHHHHHHhcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhhCChhHHHHHHHhc
Q 046221 441 ALYHKMTETGEVP-DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPS--QEHYGCVVDLLARAGCLSDASGLAGKL 517 (572)
Q Consensus 441 ~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 517 (572)
.+|++..+. .| +...|..++..+.+.|++++|..+|+++++...++|+ ...|..++..+.+.|+.++|..+++++
T Consensus 190 ~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 190 KIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888774 44 4577778888888888888888888888754334553 457778888888888888888888887
Q ss_pred cC
Q 046221 518 LE 519 (572)
Q Consensus 518 ~~ 519 (572)
.+
T Consensus 268 ~~ 269 (308)
T 2ond_A 268 FT 269 (308)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.34 E-value=9.1e-11 Score=111.96 Aligned_cols=225 Identities=8% Similarity=-0.115 Sum_probs=159.7
Q ss_pred HHHHHHhcCChhHHHHHHhccCC-----CC----cchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCC-----HhHHH
Q 046221 292 IIAMYSKCGDLDSSRSVFNQITE-----KS----LVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVD-----SITLV 357 (572)
Q Consensus 292 l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~ 357 (572)
....+...|++++|...|++..+ ++ ..++..+...|...|++++|+..+++..+.....++ ..++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 44556677778877777776643 22 246677777788888888888888776533222222 34666
Q ss_pred HHHHHhcccccHHHHHHHHHHHHHhcCC-C----chhHHHHHHHHhhhcCChHHHHHHHHHc-------CC-CCCHhHHH
Q 046221 358 SILTASGELAALEICLQLHGIAFEAGFP-R----YRSVQNCLISSYSKCGNVDLAYIVFEEM-------GF-LRDVVSWN 424 (572)
Q Consensus 358 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~-~~~~~~~~ 424 (572)
.+...+...|+++.|...++...+.... + ...++..+..+|...|++++|.+.+++. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7777788888888888888777654211 1 1246777889999999999999999877 22 22356788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCC---CCC-HHHHHHHHHHHhccCC---hHHHHHHHHHhHHhcCCCCChhHHHHH
Q 046221 425 TIIYGYGVNGHGETALALYHKMTETGE---VPD-SSTYLSILNACGHAGL---TNDGLVIFNQMIEENKVKPSQEHYGCV 497 (572)
Q Consensus 425 ~l~~~~~~~~~~~~A~~~~~~~~~~g~---~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~l 497 (572)
.+...|.+.|++++|...+++..+..- .|. ...+..+...+...|+ +++|+.++++. .. .+.....+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~--~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-ML--YADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TC--HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cC--HHHHHHHHHHH
Confidence 889999999999999999998876310 222 2345677888899998 77788887765 11 12334477789
Q ss_pred HHHHHhhCChhHHHHHHHhccC
Q 046221 498 VDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 498 ~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
...|...|++++|.+.+++...
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999998754
No 72
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.34 E-value=5.1e-10 Score=106.47 Aligned_cols=228 Identities=12% Similarity=0.013 Sum_probs=163.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCCC----HhHHHHHHHHhcccccHHHHHHHHHHHHHhcCC-C-----chhHHH
Q 046221 323 IISGYVQNGCAREALNQFIKMRQEKTDSVD----SITLVSILTASGELAALEICLQLHGIAFEAGFP-R-----YRSVQN 392 (572)
Q Consensus 323 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~~~~~ 392 (572)
....+...|++++|+..|++........++ ..++..+...+...|+++.|...+....+.... + ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 344566788888888888887633222233 346667777788888888888888777654211 1 245677
Q ss_pred HHHHHhhhcCChHHHHHHHHHc-------CCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHh-----cCCCCCHHHHH
Q 046221 393 CLISSYSKCGNVDLAYIVFEEM-------GFLR-DVVSWNTIIYGYGVNGHGETALALYHKMTE-----TGEVPDSSTYL 459 (572)
Q Consensus 393 ~l~~~~~~~g~~~~A~~~~~~~-------~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~g~~p~~~~~~ 459 (572)
.+..+|...|++++|.+.+++. +..+ ...++..+...|...|++++|+..+++..+ .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 7888999999999999988877 1111 135677888899999999999999999877 32 22357788
Q ss_pred HHHHHHhccCChHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhhCC---hhHHHHHHHhccCCCC-hHHHHHHHHH
Q 046221 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPS---QEHYGCVVDLLARAGC---LSDASGLAGKLLEGMG-PNIWRALLSG 532 (572)
Q Consensus 460 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~l~~~ 532 (572)
.+...+.+.|++++|...++++++...-.++ ...+..+...+...|+ +.+|...+++....++ ...+..+...
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence 8899999999999999999998765422122 3356666677778888 8889999988654333 3345555555
Q ss_pred HhhhcCCHHHHHHHHHHHHh
Q 046221 533 CVLHVGRFQDAEALRSGSQK 552 (572)
Q Consensus 533 ~~~~~g~~~~A~~~~~~m~~ 552 (572)
+... |++++|...+++..+
T Consensus 346 y~~~-g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 346 FESS-CHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHT-TCHHHHHHHHHHHHH
T ss_pred HHHC-CCHHHHHHHHHHHHH
Confidence 6555 999999999998764
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.32 E-value=4.2e-11 Score=110.60 Aligned_cols=235 Identities=13% Similarity=0.083 Sum_probs=165.3
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHhcC------CCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHh------cC-
Q 046221 318 VSWTAIISGYVQNGCAREALNQFIKMRQEK------TDSVDSITLVSILTASGELAALEICLQLHGIAFEA------GF- 384 (572)
Q Consensus 318 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~- 384 (572)
.++..+...+...|++++|..+++++.+.. ..+.....+..+...+...|+++.|...++...+. +-
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 568888899999999999999999987321 23334567788888899999999999999888765 22
Q ss_pred CCchhHHHHHHHHhhhcCChHHHHHHHHHc-C-------C-CC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhc-----
Q 046221 385 PRYRSVQNCLISSYSKCGNVDLAYIVFEEM-G-------F-LR-DVVSWNTIIYGYGVNGHGETALALYHKMTET----- 449 (572)
Q Consensus 385 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-------~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----- 449 (572)
+.....+..+...+...|++++|...+++. . . .| ....+..+...|...|++++|+.+++++.+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 234567788899999999999999999887 1 1 12 3556788889999999999999999998874
Q ss_pred -CCCCCH-HHHHHHHHHHhccCChHHHHHHHHHhHHhc------CCCCCh-------hHHHHHHHHHHhhCChhHHHHHH
Q 046221 450 -GEVPDS-STYLSILNACGHAGLTNDGLVIFNQMIEEN------KVKPSQ-------EHYGCVVDLLARAGCLSDASGLA 514 (572)
Q Consensus 450 -g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~ 514 (572)
+..|+. .++..+...+...|++++|..+++++++.. ...+.. ..+..+...+...+.+.+|...+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 224433 678888999999999999999999987531 111111 12233334445566677777777
Q ss_pred HhccC--CCChHHHHHHHHHHhhhcCCHHHHHHHHHHHHhC
Q 046221 515 GKLLE--GMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKK 553 (572)
Q Consensus 515 ~~~~~--~~~~~~~~~l~~~~~~~~g~~~~A~~~~~~m~~~ 553 (572)
++... +....++..+...+... |++++|.+.+++..+.
T Consensus 268 ~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 268 KACKVDSPTVTTTLKNLGALYRRQ-GKFEAAETLEEAAMRS 307 (311)
T ss_dssp ------CHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
Confidence 77765 33344677777777777 9999999999988654
No 74
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.31 E-value=9.1e-11 Score=98.98 Aligned_cols=164 Identities=13% Similarity=-0.015 Sum_probs=135.1
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHHc-CC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q 046221 389 SVQNCLISSYSKCGNVDLAYIVFEEM-GF-LRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACG 466 (572)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 466 (572)
..+..+...+...|++++|...++++ .. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34566777888999999999999988 33 3457788888999999999999999999998852 335688888899999
Q ss_pred ccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC--CCChHHHHHHHHHHhhhcCCHHHHH
Q 046221 467 HAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE--GMGPNIWRALLSGCVLHVGRFQDAE 544 (572)
Q Consensus 467 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~g~~~~A~ 544 (572)
..|++++|.+.++++++.. +.+...+..+..++...|++++|.+.++++.. +.++..+..+...+... |++++|.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~ 164 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQM-GRHEEAL 164 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHc-CCHHHHH
Confidence 9999999999999997654 55677888899999999999999999999877 44566777777777766 9999999
Q ss_pred HHHHHHHhCCCC
Q 046221 545 ALRSGSQKKGII 556 (572)
Q Consensus 545 ~~~~~m~~~~~~ 556 (572)
..+++..+....
T Consensus 165 ~~~~~~~~~~~~ 176 (186)
T 3as5_A 165 PHFKKANELDEG 176 (186)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHcCCC
Confidence 999998776543
No 75
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.31 E-value=7.1e-11 Score=115.56 Aligned_cols=192 Identities=14% Similarity=0.052 Sum_probs=121.4
Q ss_pred CcchHHHHHHHHHhcCCh-hHHHHHHhccCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHH
Q 046221 285 ELRLSNSIIAMYSKCGDL-DSSRSVFNQITE---KSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSIL 360 (572)
Q Consensus 285 ~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll 360 (572)
+...+..+...+...|++ ++|+..|++..+ .+...|..+..+|...|++++|...|++.. .. .|+...+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al-~~--~p~~~~~~~-- 175 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGAL-TH--CKNKVSLQN-- 175 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-TT--CCCHHHHHH--
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hh--CCCHHHHHH--
Confidence 334444455555555555 555555554432 233456666666666777777777776665 21 233344444
Q ss_pred HHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhc---------CChHHHHHHHHHc-C-CCCCHhHHHHHHHH
Q 046221 361 TASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC---------GNVDLAYIVFEEM-G-FLRDVVSWNTIIYG 429 (572)
Q Consensus 361 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~ 429 (572)
+..++... |++++|+..+++. . .+.+...|..+..+
T Consensus 176 ---------------------------------lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 222 (474)
T 4abn_A 176 ---------------------------------LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNA 222 (474)
T ss_dssp ---------------------------------HHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ---------------------------------HHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44444444 5566666666655 2 22345666677777
Q ss_pred HHhc--------CChHHHHHHHHHHHhcCCCC----CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHH
Q 046221 430 YGVN--------GHGETALALYHKMTETGEVP----DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCV 497 (572)
Q Consensus 430 ~~~~--------~~~~~A~~~~~~~~~~g~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 497 (572)
|... |++++|+..|++..+. .| +...|..+..+|...|++++|+..|+++++.. +.+...+..+
T Consensus 223 ~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~a~~~l 298 (474)
T 4abn_A 223 YLSLYFNTGQNPKISQQALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD--PAWPEPQQRE 298 (474)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 7666 7788888888888874 45 56778888888888888888888888887544 3445567778
Q ss_pred HHHHHhhCChhHHHHHHHhcc
Q 046221 498 VDLLARAGCLSDASGLAGKLL 518 (572)
Q Consensus 498 ~~~~~~~g~~~~A~~~~~~~~ 518 (572)
..++...|++++|.+.+.++.
T Consensus 299 ~~~~~~lg~~~eAi~~~~~~~ 319 (474)
T 4abn_A 299 QQLLEFLSRLTSLLESKGKTK 319 (474)
T ss_dssp HHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHHhcccc
Confidence 888888888888887766653
No 76
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.27 E-value=8.4e-11 Score=119.65 Aligned_cols=159 Identities=13% Similarity=0.125 Sum_probs=90.0
Q ss_pred hhHHHHHHHHhhhcCChHHHHHHHHHc-CCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-HHHHHHHHHH
Q 046221 388 RSVQNCLISSYSKCGNVDLAYIVFEEM-GFLR-DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD-SSTYLSILNA 464 (572)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~ 464 (572)
...++.+..+|.+.|++++|++.|++. .+.| +..+|..+..+|.+.|++++|+..|++.++ +.|+ ...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 445555556666666666666666655 2223 245556666666666666666666666665 3443 3556666666
Q ss_pred HhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC-CC-ChHHHHHHHHHHhhhcCCHHH
Q 046221 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE-GM-GPNIWRALLSGCVLHVGRFQD 542 (572)
Q Consensus 465 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~g~~~~ 542 (572)
+...|++++|++.|+++++.. +-+...+..+..+|.+.|++++|++.++++.+ .| +...|..+...+... |++++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~--P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~-g~~~~ 163 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN--PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIV-CDWTD 163 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT-TCCTT
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhc-ccHHH
Confidence 666666666666666665433 23344566666666666666666666666555 33 334455555555444 66666
Q ss_pred HHHHHHHHH
Q 046221 543 AEALRSGSQ 551 (572)
Q Consensus 543 A~~~~~~m~ 551 (572)
|.+.+++..
T Consensus 164 A~~~~~kal 172 (723)
T 4gyw_A 164 YDERMKKLV 172 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666555554
No 77
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.26 E-value=1.1e-10 Score=107.77 Aligned_cols=233 Identities=13% Similarity=0.074 Sum_probs=166.7
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHhccCC--------CC---cchHHHHHHHHHHcCChHHHHHHHHHHHhcC-----C
Q 046221 285 ELRLSNSIIAMYSKCGDLDSSRSVFNQITE--------KS---LVSWTAIISGYVQNGCAREALNQFIKMRQEK-----T 348 (572)
Q Consensus 285 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~ 348 (572)
...++..+...+...|++++|...|+++.+ .+ ..++..+...+...|++++|...+++..... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 345778889999999999999999988764 22 2467888899999999999999999987431 2
Q ss_pred -CCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHh------cC-CCchhHHHHHHHHhhhcCChHHHHHHHHHc-CC---
Q 046221 349 -DSVDSITLVSILTASGELAALEICLQLHGIAFEA------GF-PRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GF--- 416 (572)
Q Consensus 349 -~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~--- 416 (572)
.+.....+..+...+...|+++.|...++.+.+. +. +.....+..+...+...|++++|.+++++. ..
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2334567888888999999999999999988765 22 224566788899999999999999999987 11
Q ss_pred -----CC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhc-------CCCCCH-------HHHHHHHHHHhccCChHHHHH
Q 046221 417 -----LR-DVVSWNTIIYGYGVNGHGETALALYHKMTET-------GEVPDS-------STYLSILNACGHAGLTNDGLV 476 (572)
Q Consensus 417 -----~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------g~~p~~-------~~~~~l~~~~~~~g~~~~a~~ 476 (572)
.| ...++..+...|...|++++|...++++.+. ...+.. ..+..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 23 2456888899999999999999999999863 122222 122233334455666777777
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC
Q 046221 477 IFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
.++...... +....++..+..+|.+.|++++|.+.++++.+
T Consensus 266 ~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVDS--PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --------C--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCCCC--chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777775322 34556888999999999999999999998754
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.22 E-value=8.6e-10 Score=104.89 Aligned_cols=224 Identities=9% Similarity=0.013 Sum_probs=158.8
Q ss_pred HHHHHHhcCChhHHHHHHhccCC-----CC----cchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC-----CHhHHH
Q 046221 292 IIAMYSKCGDLDSSRSVFNQITE-----KS----LVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSV-----DSITLV 357 (572)
Q Consensus 292 l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ 357 (572)
....+...|++++|...|++..+ ++ ..++..+...|...|+++.|+..+++..+.....+ ...++.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34456677888888877776643 22 23566777788888888888888877653322212 234666
Q ss_pred HHHHHhcccccHHHHHHHHHHHHHhc--CC---CchhHHHHHHHHhhhcCChHHHHHHHHHc-------CCCCCHhHHHH
Q 046221 358 SILTASGELAALEICLQLHGIAFEAG--FP---RYRSVQNCLISSYSKCGNVDLAYIVFEEM-------GFLRDVVSWNT 425 (572)
Q Consensus 358 ~ll~~~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~~ 425 (572)
.+...+...|+++.|...++...+.. .. ....++..+..+|...|++++|.+.+++. +.+....++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 77778888888888888887776532 11 12346677888999999999999999877 23223567788
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCC---CCCH-HHHHHHHHHHhccCC---hHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 046221 426 IIYGYGVNGHGETALALYHKMTETGE---VPDS-STYLSILNACGHAGL---TNDGLVIFNQMIEENKVKPSQEHYGCVV 498 (572)
Q Consensus 426 l~~~~~~~~~~~~A~~~~~~~~~~g~---~p~~-~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 498 (572)
+...|.+.|++++|...+++..+..- .|.. ..+..+...+...|+ +.+|+.++++. ...+.....+..+.
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la 343 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHH
Confidence 88999999999999999999887421 2322 456666677888888 77788777753 11122334677889
Q ss_pred HHHHhhCChhHHHHHHHhcc
Q 046221 499 DLLARAGCLSDASGLAGKLL 518 (572)
Q Consensus 499 ~~~~~~g~~~~A~~~~~~~~ 518 (572)
..|...|++++|...++++.
T Consensus 344 ~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999875
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.21 E-value=1.2e-09 Score=95.73 Aligned_cols=193 Identities=9% Similarity=-0.042 Sum_probs=140.5
Q ss_pred CCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc-CCCC-CHhHHHHHHH
Q 046221 351 VDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFLR-DVVSWNTIIY 428 (572)
Q Consensus 351 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~ 428 (572)
.|+..+......+...|++++|...++...+...+++...+..+..++...|++++|++.+++. ...| +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 4567777778888888999999999988888764466666666888888899999999988887 4444 4667888888
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCC-H-------HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC---hhHHHHH
Q 046221 429 GYGVNGHGETALALYHKMTETGEVPD-S-------STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPS---QEHYGCV 497 (572)
Q Consensus 429 ~~~~~~~~~~A~~~~~~~~~~g~~p~-~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l 497 (572)
.|...|++++|+..+++..+. .|+ . ..|..+...+...|++++|+..|+++++. .|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV---TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---SCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc---CCCcccHHHHHHH
Confidence 888889999999999888884 453 3 44777777888888999999999888743 454 4577777
Q ss_pred HHHHHhhCChhHHHHHHHhccC--CCChHHHHHHHHHHhhhcCCHHHHHHHHHHHHhCCCC
Q 046221 498 VDLLARAGCLSDASGLAGKLLE--GMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGII 556 (572)
Q Consensus 498 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~g~~~~A~~~~~~m~~~~~~ 556 (572)
..+|...|+ ..++++.. ..+...|...... . .+.+++|+..+++..+..+.
T Consensus 160 ~~~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~--~-~~~~~~A~~~~~~a~~l~p~ 212 (228)
T 4i17_A 160 GVLFYNNGA-----DVLRKATPLASSNKEKYASEKAK--A-DAAFKKAVDYLGEAVTLSPN 212 (228)
T ss_dssp HHHHHHHHH-----HHHHHHGGGTTTCHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHH-----HHHHHHHhcccCCHHHHHHHHHH--H-HHHHHHHHHHHHHHhhcCCC
Confidence 777765553 33444433 3334444444332 2 27789999999999877654
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.20 E-value=2.8e-09 Score=101.17 Aligned_cols=292 Identities=13% Similarity=0.037 Sum_probs=191.6
Q ss_pred HHHhcccCChHHHHHHHHHHHHhCCCCCcc----hHHHHHHHHHhcCChhHHHHHHhccCC-----CCc----chHHHHH
Q 046221 258 ISVNAILGDLKRGKQLHAQVVLGGLQSELR----LSNSIIAMYSKCGDLDSSRSVFNQITE-----KSL----VSWTAII 324 (572)
Q Consensus 258 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~----~~~~~l~ 324 (572)
...+...|+++.|...++.........+.. .+..+...+...|++++|...+++... .+. .++..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345567899999999999988765322222 455667778889999999998887653 222 2355667
Q ss_pred HHHHHcCChHHHHHHHHHHHhcC---CCC--CC-HhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCC----chhHHHHH
Q 046221 325 SGYVQNGCAREALNQFIKMRQEK---TDS--VD-SITLVSILTASGELAALEICLQLHGIAFEAGFPR----YRSVQNCL 394 (572)
Q Consensus 325 ~~~~~~~~~~~a~~~~~~~~~~~---~~~--~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l 394 (572)
..+...|++++|...+++..... +.. |. ...+..+...+...|+++.|...++......... ....+..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 78888999999999998876332 222 22 3355556677788899999999888877654321 23456677
Q ss_pred HHHhhhcCChHHHHHHHHHc----CCCCCHhHHH-----HHHHHHHhcCChHHHHHHHHHHHhcCCCCC---HHHHHHHH
Q 046221 395 ISSYSKCGNVDLAYIVFEEM----GFLRDVVSWN-----TIIYGYGVNGHGETALALYHKMTETGEVPD---SSTYLSIL 462 (572)
Q Consensus 395 ~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~-----~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~---~~~~~~l~ 462 (572)
...+...|++++|...+++. ........+. ..+..+...|++++|...+++.......+. ...+..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 78888889999998888876 1111111222 223446788999999998888776432111 23456677
Q ss_pred HHHhccCChHHHHHHHHHhHHhc---CCCCCh-hHHHHHHHHHHhhCChhHHHHHHHhccCCCChHHHHHHHHHHhhhcC
Q 046221 463 NACGHAGLTNDGLVIFNQMIEEN---KVKPSQ-EHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVG 538 (572)
Q Consensus 463 ~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~g 538 (572)
..+...|++++|...++++++.. +.+++. ..+..+..++...|+.++|...+++........ ..+..+... |
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~---g~~~~~~~~-g 336 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT---GFISHFVIE-G 336 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---CCCHHHHTT-H
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccc---cHHHHHHHc-c
Confidence 78888899999999888876432 212222 256667778888899999999888887511000 111222223 4
Q ss_pred CHHHHHHHHHHHHhCCC
Q 046221 539 RFQDAEALRSGSQKKGI 555 (572)
Q Consensus 539 ~~~~A~~~~~~m~~~~~ 555 (572)
+....+++.+.+...
T Consensus 337 --~~~~~ll~~~~~~~~ 351 (373)
T 1hz4_A 337 --EAMAQQLRQLIQLNT 351 (373)
T ss_dssp --HHHHHHHHHHHHTTC
T ss_pred --HHHHHHHHHHHhCCC
Confidence 567777777766554
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.19 E-value=1.6e-09 Score=94.90 Aligned_cols=202 Identities=10% Similarity=0.056 Sum_probs=153.9
Q ss_pred CCcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHH
Q 046221 315 KSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394 (572)
Q Consensus 315 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 394 (572)
.++..+......+...|++++|+..|++.. ....+++...+..+..++...|++++|...++...+.. +.+...+..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYL-KLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHH-hccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 355678888899999999999999999997 43333677777778899999999999999999998765 4467788899
Q ss_pred HHHhhhcCChHHHHHHHHHc-CCCCC-H-------hHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--H-HHHHHHH
Q 046221 395 ISSYSKCGNVDLAYIVFEEM-GFLRD-V-------VSWNTIIYGYGVNGHGETALALYHKMTETGEVPD--S-STYLSIL 462 (572)
Q Consensus 395 ~~~~~~~g~~~~A~~~~~~~-~~~~~-~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~--~-~~~~~l~ 462 (572)
..++...|++++|...+++. ...|+ . ..|..+...+...|++++|+..|++..+ +.|+ . ..+..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHH
Confidence 99999999999999999998 33333 4 4577888889999999999999999998 5676 4 6777888
Q ss_pred HHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC-CCChHHHHHH
Q 046221 463 NACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE-GMGPNIWRAL 529 (572)
Q Consensus 463 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l 529 (572)
.+|...| ..+++++.... ..+...+.... ....+.+++|...+++..+ .|+......+
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~--~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~ 219 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA--SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQM 219 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT--TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHhcc--cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 8876544 44556554322 23344444443 3456778999999999887 5554443333
No 82
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.19 E-value=8e-09 Score=98.03 Aligned_cols=292 Identities=11% Similarity=-0.066 Sum_probs=202.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcc----chHHHHHHhcccCChHHHHHHHHHHHHhCCC-CCc----chH
Q 046221 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTV----ALLNLISVNAILGDLKRGKQLHAQVVLGGLQ-SEL----RLS 289 (572)
Q Consensus 219 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~ 289 (572)
.......+...|++++|...+++........+.. .+..+...+...|+++.|...+++....... .+. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3445556778999999999999988764222221 3445556778889999999999998764321 111 235
Q ss_pred HHHHHHHHhcCChhHHHHHHhccCC-----CC------cchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-C--CHhH
Q 046221 290 NSIIAMYSKCGDLDSSRSVFNQITE-----KS------LVSWTAIISGYVQNGCAREALNQFIKMRQEKTDS-V--DSIT 355 (572)
Q Consensus 290 ~~l~~~~~~~~~~~~a~~~~~~~~~-----~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~--~~~~ 355 (572)
..+...+...|++++|...+++... .+ ...+..+...+...|++++|...+++........ + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 6677889999999999999887652 11 1345667788899999999999999887433221 1 2345
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhcCCCch-hHHH-----HHHHHhhhcCChHHHHHHHHHc-CCCCC-----HhHH
Q 046221 356 LVSILTASGELAALEICLQLHGIAFEAGFPRYR-SVQN-----CLISSYSKCGNVDLAYIVFEEM-GFLRD-----VVSW 423 (572)
Q Consensus 356 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~g~~~~A~~~~~~~-~~~~~-----~~~~ 423 (572)
+..+...+...|+++.|...++......-.++. ..+. ..+..+...|++++|...+++. ...|. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 677778888999999999999988765322221 1221 2334577899999999999998 22221 2346
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhc----CCCCCH-HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 046221 424 NTIIYGYGVNGHGETALALYHKMTET----GEVPDS-STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVV 498 (572)
Q Consensus 424 ~~l~~~~~~~~~~~~A~~~~~~~~~~----g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 498 (572)
..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...++++++.. +.. ..+
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~---~~~----g~~ 329 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA---NRT----GFI 329 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---HHH----CCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh---ccc----cHH
Confidence 67788899999999999999987653 222223 366777888999999999999999997543 111 122
Q ss_pred HHHHhhCChhHHHHHHHhccC
Q 046221 499 DLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 499 ~~~~~~g~~~~A~~~~~~~~~ 519 (572)
..+...| +....+++.+..
T Consensus 330 ~~~~~~g--~~~~~ll~~~~~ 348 (373)
T 1hz4_A 330 SHFVIEG--EAMAQQLRQLIQ 348 (373)
T ss_dssp HHHHTTH--HHHHHHHHHHHH
T ss_pred HHHHHcc--HHHHHHHHHHHh
Confidence 3344444 556666666654
No 83
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.18 E-value=2.6e-09 Score=89.86 Aligned_cols=95 Identities=12% Similarity=-0.001 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 046221 421 VSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDL 500 (572)
Q Consensus 421 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 500 (572)
..+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|..+++++++.. +.+...+..++.+
T Consensus 77 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~ 153 (186)
T 3as5_A 77 KVATVLGLTYVQVQKYDLAVPLLIKVAEA-NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--PNEGKVHRAIAFS 153 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--ccchHHHHHHHHH
Confidence 33344444444444444444444444442 11233444444444444444444444444444322 2233344444444
Q ss_pred HHhhCChhHHHHHHHhcc
Q 046221 501 LARAGCLSDASGLAGKLL 518 (572)
Q Consensus 501 ~~~~g~~~~A~~~~~~~~ 518 (572)
+...|++++|.+.++++.
T Consensus 154 ~~~~~~~~~A~~~~~~~~ 171 (186)
T 3as5_A 154 YEQMGRHEEALPHFKKAN 171 (186)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 444444444444444443
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.16 E-value=7.8e-10 Score=112.58 Aligned_cols=162 Identities=14% Similarity=0.148 Sum_probs=123.0
Q ss_pred HhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc-CCCC-CHhHHHHHHHHH
Q 046221 353 SITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFLR-DVVSWNTIIYGY 430 (572)
Q Consensus 353 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~ 430 (572)
...++.+...+.+.|++++|...|++..+.. +-+...+..+..+|.+.|++++|++.|++. .+.| +...|..+..+|
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3455555566666666666666666665553 445667777888888888888888888887 4444 467888888888
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhH
Q 046221 431 GVNGHGETALALYHKMTETGEVPD-SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSD 509 (572)
Q Consensus 431 ~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 509 (572)
...|++++|++.|++.++ +.|+ ...|..+..+|...|++++|++.|+++++.. +-+...+..++.+|...|++++
T Consensus 88 ~~~g~~~~A~~~~~kAl~--l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~--P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQ--INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK--PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHhhhhhHHHhcccHHH
Confidence 889999999999988888 4664 5788888888899999999999999888654 3445678888888889999998
Q ss_pred HHHHHHhccC
Q 046221 510 ASGLAGKLLE 519 (572)
Q Consensus 510 A~~~~~~~~~ 519 (572)
|.+.++++.+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887654
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.15 E-value=1.5e-09 Score=98.43 Aligned_cols=198 Identities=13% Similarity=0.089 Sum_probs=118.4
Q ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHh------cC-CCchhHHHHHHHHhhhcCChHHHHHHHHHc-C---------CC
Q 046221 355 TLVSILTASGELAALEICLQLHGIAFEA------GF-PRYRSVQNCLISSYSKCGNVDLAYIVFEEM-G---------FL 417 (572)
Q Consensus 355 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---------~~ 417 (572)
++..+...+...|+++.|...++.+.+. +- +.....+..+..+|...|++++|...+++. . .+
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 124 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP 124 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 4444444444555555555554444432 11 223455667777788888888888877766 1 11
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhc------CCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhHHhc-----
Q 046221 418 RDVVSWNTIIYGYGVNGHGETALALYHKMTET------GEVPD-SSTYLSILNACGHAGLTNDGLVIFNQMIEEN----- 485 (572)
Q Consensus 418 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----- 485 (572)
....++..+...|...|++++|...++++.+. +-.|+ ..++..+...|...|++++|..+++++++..
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 204 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF 204 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 23566778888888999999999998888774 11343 3678888888999999999999998887531
Q ss_pred -CCCCC-hhHHHHHHHHHHhhCC------hhHHHHHHHhccC-CCC-hHHHHHHHHHHhhhcCCHHHHHHHHHHHHhC
Q 046221 486 -KVKPS-QEHYGCVVDLLARAGC------LSDASGLAGKLLE-GMG-PNIWRALLSGCVLHVGRFQDAEALRSGSQKK 553 (572)
Q Consensus 486 -~~~~~-~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~~g~~~~A~~~~~~m~~~ 553 (572)
...+. ...+..+...+...+. +..+...++.... .|+ ..++..+...+... |++++|...+++..+.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 205 GSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQ-GKLEAAHTLEDCASRN 281 (283)
T ss_dssp SSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTT
T ss_pred CCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Confidence 11222 2234444444433333 3344444444433 222 33566666667666 9999999999987653
No 86
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.07 E-value=3.7e-08 Score=87.72 Aligned_cols=181 Identities=15% Similarity=0.153 Sum_probs=100.1
Q ss_pred HHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcC-CCchhHHHHHHHHhhhcCChHHHHHHHHHc
Q 046221 336 ALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGF-PRYRSVQNCLISSYSKCGNVDLAYIVFEEM 414 (572)
Q Consensus 336 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 414 (572)
|+..|++.. ..+ .++..++..+..++...|++++|.+++......+- .-+...+...+..+.+.|+.+.|.+.+++|
T Consensus 85 a~~~l~~l~-~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLL-KDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTT-TTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH-hcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 566666654 222 34444445566666666777777777766544332 134555566666677777777777777666
Q ss_pred -CCCC-----CHhHHHHHHHHH--HhcC--ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHh
Q 046221 415 -GFLR-----DVVSWNTIIYGY--GVNG--HGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEE 484 (572)
Q Consensus 415 -~~~~-----~~~~~~~l~~~~--~~~~--~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 484 (572)
...| +..+...|+.++ ...| ++++|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+.
T Consensus 163 ~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 163 TNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred HhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3434 234444444442 2222 667777777776553 354333334444666677777777777655432
Q ss_pred c----C----CCCChhHHHHHHHHHHhhCChhHHHHHHHhccC-CCC
Q 046221 485 N----K----VKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE-GMG 522 (572)
Q Consensus 485 ~----~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~ 522 (572)
. . -+-+..++..+|......|+ +|.++++++.. .|+
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~ 285 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE 285 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence 1 0 02344455455555555565 66666666665 444
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.06 E-value=4.6e-09 Score=95.70 Aligned_cols=160 Identities=9% Similarity=-0.045 Sum_probs=86.3
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHHc-------CCCC-CHhHHHHHHHHHHhc-CChHHHHHHHHHHHhcCCCCC-----
Q 046221 389 SVQNCLISSYSKCGNVDLAYIVFEEM-------GFLR-DVVSWNTIIYGYGVN-GHGETALALYHKMTETGEVPD----- 454 (572)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~-~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~g~~p~----- 454 (572)
.+|+.+..+|.+.|++++|+..+++. +... ...+++.+...|... |++++|+..|++..+. .|+
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~ 155 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVA 155 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChH
Confidence 45555666666666666666666555 1100 134566666666664 7777777777666652 221
Q ss_pred --HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCh-----hHHHHHHHHHHhhCChhHHHHHHHhccC-CCChH--
Q 046221 455 --SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQ-----EHYGCVVDLLARAGCLSDASGLAGKLLE-GMGPN-- 524 (572)
Q Consensus 455 --~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~-- 524 (572)
..++..+...+...|++++|+..|+++++...-.+.. ..+..++.++...|++++|...+++... .|+..
T Consensus 156 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 2346666666777777777777777666433111111 1455566666677777777777777665 33211
Q ss_pred ----HHHHHHHHHhh-hcCCHHHHHHHHHHH
Q 046221 525 ----IWRALLSGCVL-HVGRFQDAEALRSGS 550 (572)
Q Consensus 525 ----~~~~l~~~~~~-~~g~~~~A~~~~~~m 550 (572)
.+..+...+.. ..+++++|+..|+++
T Consensus 236 ~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp --HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 12233333321 125566666666544
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.05 E-value=2e-08 Score=89.46 Aligned_cols=176 Identities=13% Similarity=0.096 Sum_probs=114.1
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc-CCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 046221 372 CLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFLR---DVVSWNTIIYGYGVNGHGETALALYHKMT 447 (572)
Q Consensus 372 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 447 (572)
+...++.....+ +++......+..++...|++++|++++.+. +..| +...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455565555444 444555557777888888888888888876 4433 45666677788888888888888888887
Q ss_pred hcCCCC-----CHHHHHHHHHH--HhccC--ChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhcc
Q 046221 448 ETGEVP-----DSSTYLSILNA--CGHAG--LTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518 (572)
Q Consensus 448 ~~g~~p-----~~~~~~~l~~~--~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 518 (572)
+ ..| +..+...|+.+ ....| ++.+|..+|+++.+. .|+..+...+..++.+.|++++|.+.++.+.
T Consensus 164 ~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 N--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp H--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred h--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7 466 34555555555 33334 788888888887532 3543333334447888888888888887655
Q ss_pred C------------CCChHHHHHHHHHHhhhcCCHHHHHHHHHHHHhCCCC
Q 046221 519 E------------GMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGII 556 (572)
Q Consensus 519 ~------------~~~~~~~~~l~~~~~~~~g~~~~A~~~~~~m~~~~~~ 556 (572)
. +.++.+...++...... |+ +|.++++++.+..+.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~l-gk--~a~~l~~qL~~~~P~ 285 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQ-GL--DTEDLTNQLVKLDHE 285 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHT-TC--TTHHHHHHHHHTTCC
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHh-Ch--HHHHHHHHHHHhCCC
Confidence 4 22344443443333333 65 778888888776643
No 89
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.05 E-value=8.4e-09 Score=81.45 Aligned_cols=129 Identities=17% Similarity=0.247 Sum_probs=78.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 046221 422 SWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLL 501 (572)
Q Consensus 422 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 501 (572)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++++++.. +.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHH
Confidence 34555666666666777777666666542 2244556666666666677777777776665432 33445566666666
Q ss_pred HhhCChhHHHHHHHhccC--CCChHHHHHHHHHHhhhcCCHHHHHHHHHHHHhCC
Q 046221 502 ARAGCLSDASGLAGKLLE--GMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKG 554 (572)
Q Consensus 502 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~g~~~~A~~~~~~m~~~~ 554 (572)
...|++++|.+.++++.. +.+...+..+...+... |++++|...++++.+..
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ-GDYDEAIEYYQKALELD 133 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHS
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH-ccHHHHHHHHHHHHccC
Confidence 677777777777766655 33445555555555555 77777777777665543
No 90
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.04 E-value=5.5e-09 Score=94.69 Aligned_cols=199 Identities=14% Similarity=0.056 Sum_probs=114.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHhc------CCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhc-------CC
Q 046221 319 SWTAIISGYVQNGCAREALNQFIKMRQE------KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAG-------FP 385 (572)
Q Consensus 319 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------~~ 385 (572)
++..+...+...|++++|+..+++.... ...+....++..+...+...|+++.|...+....+.. .+
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 124 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP 124 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 3444444555555555555555544322 1112223455555666666666666666665555431 12
Q ss_pred CchhHHHHHHHHhhhcCChHHHHHHHHHc-CC--------CC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhc------
Q 046221 386 RYRSVQNCLISSYSKCGNVDLAYIVFEEM-GF--------LR-DVVSWNTIIYGYGVNGHGETALALYHKMTET------ 449 (572)
Q Consensus 386 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~--------~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------ 449 (572)
.....+..+...+...|++++|...+++. .. .| ...++..+...|...|++++|...++++.+.
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 204 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF 204 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 23556777888888888888888888877 11 22 2456778888899999999999999888763
Q ss_pred -CCCCCH-HHHHHHHHHHhccCC------hHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC
Q 046221 450 -GEVPDS-STYLSILNACGHAGL------TNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 450 -g~~p~~-~~~~~l~~~~~~~g~------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
...+.. ..+..+...+...+. +..+...++.... ..+....++..+..+|.+.|++++|..+++++.+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 205 GSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV--DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp SSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 123332 333333333333333 2333333332210 1122334778889999999999999999988653
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.01 E-value=1.1e-08 Score=80.67 Aligned_cols=127 Identities=20% Similarity=0.226 Sum_probs=93.4
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHc--CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Q 046221 390 VQNCLISSYSKCGNVDLAYIVFEEM--GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH 467 (572)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 467 (572)
.+..+...+...|++++|..+++++ ..+.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 3455667777778888888888776 222356667777777888888888888888887752 3345677777888888
Q ss_pred cCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC
Q 046221 468 AGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 468 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
.|++++|.++++++++.. +.+...+..++.++.+.|++++|.+.++++..
T Consensus 82 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 888888888888886543 34566777788888888888888888887654
No 92
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.01 E-value=2e-08 Score=91.44 Aligned_cols=205 Identities=11% Similarity=-0.014 Sum_probs=140.2
Q ss_pred ChhHHHHHHhccCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCCCC-HhHHHHHHHHhcccccHHHHHHHH
Q 046221 301 DLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQE---KTDSVD-SITLVSILTASGELAALEICLQLH 376 (572)
Q Consensus 301 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~ 376 (572)
++++|...|++. ...|...|++++|...|.+.... .+.+++ ..++..+...+...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 366666665543 44566677777777777766422 122222 346777777777788888888777
Q ss_pred HHHHHhcCCC-----chhHHHHHHHHhhhc-CChHHHHHHHHHc-CCCC---C----HhHHHHHHHHHHhcCChHHHHHH
Q 046221 377 GIAFEAGFPR-----YRSVQNCLISSYSKC-GNVDLAYIVFEEM-GFLR---D----VVSWNTIIYGYGVNGHGETALAL 442 (572)
Q Consensus 377 ~~~~~~~~~~-----~~~~~~~l~~~~~~~-g~~~~A~~~~~~~-~~~~---~----~~~~~~l~~~~~~~~~~~~A~~~ 442 (572)
+...+..... ...+++.+..+|... |++++|+..|++. .+.| + ..++..+...|.+.|++++|+..
T Consensus 101 ~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 180 (292)
T 1qqe_A 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 7666542111 134677888899996 9999999999987 2111 1 35688889999999999999999
Q ss_pred HHHHHhcCCCCCH------HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChh------HHHHHHHHHH--hhCChh
Q 046221 443 YHKMTETGEVPDS------STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQE------HYGCVVDLLA--RAGCLS 508 (572)
Q Consensus 443 ~~~~~~~g~~p~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------~~~~l~~~~~--~~g~~~ 508 (572)
|++..+....... ..|..+..++...|++++|+..|+++++ +.|+.. .+..++.++. ..++++
T Consensus 181 ~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~ 257 (292)
T 1qqe_A 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS---EDPNFADSRESNFLKSLIDAVNEGDSEQLS 257 (292)
T ss_dssp HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC---C---------HHHHHHHHHHHHTTCTTTHH
T ss_pred HHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999984322211 1567788889999999999999998874 234322 3445566664 456799
Q ss_pred HHHHHHHhccC
Q 046221 509 DASGLAGKLLE 519 (572)
Q Consensus 509 ~A~~~~~~~~~ 519 (572)
+|+..|+++..
T Consensus 258 ~A~~~~~~~~~ 268 (292)
T 1qqe_A 258 EHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHTTSSC
T ss_pred HHHHHhccCCc
Confidence 99999988874
No 93
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.98 E-value=3.1e-09 Score=85.75 Aligned_cols=136 Identities=10% Similarity=-0.014 Sum_probs=100.9
Q ss_pred HHHHhhhcCChHHHHHHHHHc-CCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCC
Q 046221 394 LISSYSKCGNVDLAYIVFEEM-GFLRD-VVSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNACGHAGL 470 (572)
Q Consensus 394 l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~ 470 (572)
|..++...|++++|+..++.. ...|+ ...+-.+...|.+.|++++|+..|++.++ +.| +..+|..+..+|...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCc
Confidence 445566778888888888887 44443 45566788889999999999999999988 456 55888899999999999
Q ss_pred hHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHH-HHhccC-CCC-hHHHHHHHHHH
Q 046221 471 TNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL-AGKLLE-GMG-PNIWRALLSGC 533 (572)
Q Consensus 471 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~-~~~-~~~~~~l~~~~ 533 (572)
+++|+..|+++++.. +-+...+..+..+|.+.|++++|.+. ++++.+ .|+ +.+|......+
T Consensus 81 ~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll 144 (150)
T 4ga2_A 81 TDKAVECYRRSVELN--PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLL 144 (150)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 999999999998654 34567888899999999998776654 577776 454 44555444433
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.96 E-value=1.5e-08 Score=90.64 Aligned_cols=175 Identities=9% Similarity=-0.039 Sum_probs=96.2
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCC-HhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHH
Q 046221 316 SLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVD-SITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCL 394 (572)
Q Consensus 316 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 394 (572)
+...+..+...+.+.|++++|+..|+++....+..|. ...+..+..++...|+++.|...++...+...
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p---------- 83 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQ---------- 83 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCC----------
Confidence 3445555666677777777777777777532222111 33444444444445555555555544444321
Q ss_pred HHHhhhcCChHHHHHHHHHcCCCCC-HhHHHHHHHHHHh--------cCChHHHHHHHHHHHhcCCCCCH-HH-------
Q 046221 395 ISSYSKCGNVDLAYIVFEEMGFLRD-VVSWNTIIYGYGV--------NGHGETALALYHKMTETGEVPDS-ST------- 457 (572)
Q Consensus 395 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~l~~~~~~--------~~~~~~A~~~~~~~~~~g~~p~~-~~------- 457 (572)
..|. ...+..+..++.. .|++++|+..|+++.+. .|+. ..
T Consensus 84 ---------------------~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~ 140 (261)
T 3qky_A 84 ---------------------IDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKI 140 (261)
T ss_dssp ---------------------TCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHH
T ss_pred ---------------------CCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHH
Confidence 1111 2233334444444 45555555555555442 2321 11
Q ss_pred ----------HHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhh----------CChhHHHHHHHh
Q 046221 458 ----------YLSILNACGHAGLTNDGLVIFNQMIEENKVKP-SQEHYGCVVDLLARA----------GCLSDASGLAGK 516 (572)
Q Consensus 458 ----------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~----------g~~~~A~~~~~~ 516 (572)
+..+...|.+.|++++|+..|+++++...-.+ ....+..+..+|... |++++|...+++
T Consensus 141 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~ 220 (261)
T 3qky_A 141 RELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYER 220 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHH
Confidence 24566778888888888888888876542111 234666777777765 778888888888
Q ss_pred ccC-CCCh
Q 046221 517 LLE-GMGP 523 (572)
Q Consensus 517 ~~~-~~~~ 523 (572)
+.. .|+.
T Consensus 221 ~~~~~p~~ 228 (261)
T 3qky_A 221 LLQIFPDS 228 (261)
T ss_dssp HHHHCTTC
T ss_pred HHHHCCCC
Confidence 776 4543
No 95
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.96 E-value=1.8e-08 Score=86.54 Aligned_cols=103 Identities=17% Similarity=0.148 Sum_probs=47.6
Q ss_pred HHHhcccccHHHHHHHHHHHHHhcCCCchhHHHH----------------HHHHhhhcCChHHHHHHHHHc-CCCC-CHh
Q 046221 360 LTASGELAALEICLQLHGIAFEAGFPRYRSVQNC----------------LISSYSKCGNVDLAYIVFEEM-GFLR-DVV 421 (572)
Q Consensus 360 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~ 421 (572)
...+...|+++.|...++...+.. +.+...+.. +..+|.+.|++++|...|++. ...| +..
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 89 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVD 89 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
Confidence 334455666666666666665543 122333333 444444445555555444444 1112 234
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHH
Q 046221 422 SWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNAC 465 (572)
Q Consensus 422 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~ 465 (572)
.+..+...|...|++++|+..|++..+ +.| +..++..+..+|
T Consensus 90 ~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 90 CLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYY 132 (208)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHH
Confidence 444444444444555555555544444 233 224444444444
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.95 E-value=1.3e-08 Score=104.21 Aligned_cols=166 Identities=10% Similarity=-0.004 Sum_probs=103.3
Q ss_pred cccccHHHHHHHHHHHHH-------hcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc-C-CCCCHhHHHHHHHHHHhcC
Q 046221 364 GELAALEICLQLHGIAFE-------AGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-G-FLRDVVSWNTIIYGYGVNG 434 (572)
Q Consensus 364 ~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~ 434 (572)
...+++++|.+.++...+ ...+.+...+..+..++...|++++|.+.+++. . .+.+...|..+..+|...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 455666666666665551 112344556666666777777777777777766 2 2234566666667777777
Q ss_pred ChHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHH
Q 046221 435 HGETALALYHKMTETGEVPD-SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGL 513 (572)
Q Consensus 435 ~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 513 (572)
++++|+..|++..+ +.|+ ...+..+..++.+.|++++ ++.|+++++.. +.+...+..+..++.+.|++++|.+.
T Consensus 482 ~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 482 DYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp CHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777777776 3453 3666667777777777777 77777776543 33455666777777777777777777
Q ss_pred HHhccC-CCC-hHHHHHHHHHHh
Q 046221 514 AGKLLE-GMG-PNIWRALLSGCV 534 (572)
Q Consensus 514 ~~~~~~-~~~-~~~~~~l~~~~~ 534 (572)
++++.+ .|+ ...|..+..++.
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~ 579 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLL 579 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC
T ss_pred HHhhcccCcccHHHHHHHHHHHH
Confidence 777765 443 334555544443
No 97
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.94 E-value=4.9e-08 Score=85.01 Aligned_cols=87 Identities=8% Similarity=0.045 Sum_probs=61.5
Q ss_pred cCChHHHHHHHHHhHHhcCCCCChh-HH-----------------HHHHHHHHhhCChhHHHHHHHhccC-CCCh----H
Q 046221 468 AGLTNDGLVIFNQMIEENKVKPSQE-HY-----------------GCVVDLLARAGCLSDASGLAGKLLE-GMGP----N 524 (572)
Q Consensus 468 ~g~~~~a~~~~~~~~~~~~~~~~~~-~~-----------------~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~----~ 524 (572)
.|++++|+..|+++++.. |+.. .+ ..+...|.+.|++++|...++++.+ .|+. .
T Consensus 109 ~~~~~~A~~~~~~~l~~~---P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 185 (225)
T 2yhc_A 109 PQQARAAFSDFSKLVRGY---PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRD 185 (225)
T ss_dssp CHHHHHHHHHHHHHHTTC---TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred cHHHHHHHHHHHHHHHHC---cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHH
Confidence 456666666666665433 2221 11 3456778899999999999999887 4443 3
Q ss_pred HHHHHHHHHhhhcCCHHHHHHHHHHHHhCCCCCC
Q 046221 525 IWRALLSGCVLHVGRFQDAEALRSGSQKKGIIKI 558 (572)
Q Consensus 525 ~~~~l~~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 558 (572)
.+..+..++... |++++|.+.++.+...++...
T Consensus 186 a~~~l~~~~~~~-g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 186 ALPLMENAYRQM-QMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHHHHc-CCcHHHHHHHHHHHhhCCCch
Confidence 566677777666 999999999999988877643
No 98
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.93 E-value=3.1e-08 Score=89.78 Aligned_cols=162 Identities=10% Similarity=-0.061 Sum_probs=94.2
Q ss_pred CCchhHHHHHHHHhhhcCChHHHHHHHHHc-CCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHH-H
Q 046221 385 PRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFLR-DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLS-I 461 (572)
Q Consensus 385 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~-l 461 (572)
+.+...+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++... .|+...... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHH
Confidence 333444455556666666677776666666 2223 3555666666666677777777777666553 454432222 2
Q ss_pred HHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC-CCC---hHHHHHHHHHHhhhc
Q 046221 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE-GMG---PNIWRALLSGCVLHV 537 (572)
Q Consensus 462 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~---~~~~~~l~~~~~~~~ 537 (572)
...+...++.++|+..++++++.. +.+...+..+..++...|++++|.+.++++.. .|+ ...+..+...+...
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~--P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~- 268 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN--PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL- 268 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH-
T ss_pred HHHHHhhcccCccHHHHHHHHhcC--CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc-
Confidence 223455566666666666666543 44455666666667777777777777766665 333 33555666555555
Q ss_pred CCHHHHHHHHHHHH
Q 046221 538 GRFQDAEALRSGSQ 551 (572)
Q Consensus 538 g~~~~A~~~~~~m~ 551 (572)
|+.++|...+++..
T Consensus 269 g~~~~a~~~~r~al 282 (287)
T 3qou_A 269 GTGDALASXYRRQL 282 (287)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 66666666666543
No 99
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.93 E-value=5.3e-08 Score=87.10 Aligned_cols=205 Identities=10% Similarity=0.027 Sum_probs=139.3
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHhccCC--C-C---cchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCC-HhHH
Q 046221 284 SELRLSNSIIAMYSKCGDLDSSRSVFNQITE--K-S---LVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVD-SITL 356 (572)
Q Consensus 284 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~ 356 (572)
.+...+-.+...+.+.|++++|...|+.+.+ | + ...+..+..++.+.|++++|+..|++.....+..|. ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 3455666778889999999999999999875 3 2 356778889999999999999999999855443433 4456
Q ss_pred HHHHHHhcc--------cccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHcCCCCCHhHHHHHHH
Q 046221 357 VSILTASGE--------LAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIY 428 (572)
Q Consensus 357 ~~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~ 428 (572)
..+..++.. .|+++.|...++.+.+.. +.+......+.......+.. ...+..+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la~ 156 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKL---------------ARKQYEAAR 156 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 666666766 888888888888877754 22222222211111000000 112456677
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHhcc----------CChHHHHHHHHHhHHhcCCCCChh--
Q 046221 429 GYGVNGHGETALALYHKMTETGEVPD----SSTYLSILNACGHA----------GLTNDGLVIFNQMIEENKVKPSQE-- 492 (572)
Q Consensus 429 ~~~~~~~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~-- 492 (572)
.|.+.|++++|+..|+++.+. .|+ ...+..+..+|... |++++|+..|+++++.. |+..
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~ 231 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF---PDSPLL 231 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC---TTCTHH
T ss_pred HHHHccCHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC---CCChHH
Confidence 888999999999999999884 454 35677777788766 88899999999998654 4432
Q ss_pred --HHHHHHHHHHhhCChhH
Q 046221 493 --HYGCVVDLLARAGCLSD 509 (572)
Q Consensus 493 --~~~~l~~~~~~~g~~~~ 509 (572)
....+...+.+.+++++
T Consensus 232 ~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 232 RTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 33344444444444443
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.92 E-value=1.6e-08 Score=84.27 Aligned_cols=156 Identities=13% Similarity=-0.015 Sum_probs=101.9
Q ss_pred HHHHHHhhhcCChHHHHHHHHHc-C-CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHH-Hhcc
Q 046221 392 NCLISSYSKCGNVDLAYIVFEEM-G-FLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNA-CGHA 468 (572)
Q Consensus 392 ~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~-~~~~ 468 (572)
......+...|++++|...+++. . .+.+...+..+...+...|++++|+..+++..+. .|+...+..+... +...
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHhh
Confidence 34556677778888888888876 2 2234566777777788888888888888877663 3444333222211 1222
Q ss_pred CChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC-CCC---hHHHHHHHHHHhhhcCCHHHHH
Q 046221 469 GLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE-GMG---PNIWRALLSGCVLHVGRFQDAE 544 (572)
Q Consensus 469 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~---~~~~~~l~~~~~~~~g~~~~A~ 544 (572)
+...+|+..++++++.. +-+...+..+..++...|++++|...++++.. .|+ ...+..+...+... |+.++|.
T Consensus 88 ~~~~~a~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~-g~~~~A~ 164 (176)
T 2r5s_A 88 AAESPELKRLEQELAAN--PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSAL-GQGNAIA 164 (176)
T ss_dssp HTSCHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHH-CSSCHHH
T ss_pred cccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHh-CCCCcHH
Confidence 23334677777777543 33566777788888888888888888888776 443 34666676666655 8888888
Q ss_pred HHHHHHHh
Q 046221 545 ALRSGSQK 552 (572)
Q Consensus 545 ~~~~~m~~ 552 (572)
..+++...
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88776543
No 101
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.89 E-value=1.2e-06 Score=85.59 Aligned_cols=368 Identities=10% Similarity=-0.042 Sum_probs=208.5
Q ss_pred hCC-ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHHHHHHhCCC-HHHH
Q 046221 127 NNK-LFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMD-LDAA 204 (572)
Q Consensus 127 ~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a 204 (572)
+.| +++.|..+|+.+... -|. |+++.+..+|+..+.. .|+...|...+....+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 345 367777777777653 233 8889999999888874 4688888888777766553 2344
Q ss_pred HHHHhhcCC------CCcccHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCccchHHHHHHhc---ccCChHHHH
Q 046221 205 IQIFREMEC------KDVISWTRMMGLFVD----FEYAGDALKIFREMRKSRIICDTVALLNLISVNA---ILGDLKRGK 271 (572)
Q Consensus 205 ~~~~~~~~~------~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~---~~~~~~~a~ 271 (572)
..+|+.... .+...|...+..+.. +++.+.+..+|++.... ++. .+..+-..|. ...+...+.
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~--~~~~lw~~Y~~fE~~~~~~~~~ 143 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMG--SLSELWKDFENFELELNKITGK 143 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCT--THHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhh--hHHHHHHHHHHHHHHhccccHH
Confidence 455554332 244666666665442 35677788888887763 211 1112211111 111111122
Q ss_pred HHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHHHHHHhccCC----CCcchHHHHHHHHHHcC--C-----hHHHHHHH
Q 046221 272 QLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE----KSLVSWTAIISGYVQNG--C-----AREALNQF 340 (572)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~--~-----~~~a~~~~ 340 (572)
.++.+.. +.+..|..+++.+.. .+...|...+.--...+ - .+.+..+|
T Consensus 144 ~~~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~y 202 (493)
T 2uy1_A 144 KIVGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIH 202 (493)
T ss_dssp HHHHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHH
Confidence 2221111 112222222222211 12234544444322211 0 23466788
Q ss_pred HHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHH-HHHHHHc---C-
Q 046221 341 IKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLA-YIVFEEM---G- 415 (572)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~---~- 415 (572)
+++... .+.+...+...+.-+.+.|+.+.|..++++.... |.+...+.. |+...+.++. ..+.+.. .
T Consensus 203 e~al~~--~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~ 274 (493)
T 2uy1_A 203 NYILDS--FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEA 274 (493)
T ss_dssp HHHHHH--TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----
T ss_pred HHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhcc
Confidence 887632 3344666666666777788899999999888887 444443332 2221111111 1122211 0
Q ss_pred ----CCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc-cCChHHHHHHHHHhHHhcCC
Q 046221 416 ----FLR---DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGH-AGLTNDGLVIFNQMIEENKV 487 (572)
Q Consensus 416 ----~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~ 487 (572)
..+ ....|...+..+.+.++.+.|..+|++. .. ...+...|...+..-.. .++.+.|..+|+.+++..
T Consensus 275 ~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-- 350 (493)
T 2uy1_A 275 ESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-- 350 (493)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--
T ss_pred chhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--
Confidence 001 1245666677777788899999999999 32 12244444332222222 336999999999998765
Q ss_pred CCChhHHHHHHHHHHhhCChhHHHHHHHhccCCCChHHHHHHHHHHhhhcCCHHHHHHHHHHHHh
Q 046221 488 KPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQK 552 (572)
Q Consensus 488 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~A~~~~~~m~~ 552 (572)
+-+...+...++...+.|+.+.|..+|+++. .....|...+.--..+ |+.+.+..+++++.+
T Consensus 351 ~~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~-G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 351 PDSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMV-GSMELFRELVDQKMD 412 (493)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHH-SCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
Confidence 2334566778888889999999999999984 3566788877766666 999999998888874
No 102
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.87 E-value=1.2e-07 Score=81.45 Aligned_cols=162 Identities=13% Similarity=-0.086 Sum_probs=94.6
Q ss_pred chhHHHHHHHHhhhcCChHHHHHHHHHcCCCCCHhHHHHHHHHHHhcC----ChHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 046221 387 YRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNG----HGETALALYHKMTETGEVPDSSTYLSIL 462 (572)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 462 (572)
++..+..+...|...+++++|.+.|++.-..-+...+..|...|.. + ++++|+.+|++..+.| +...+..|.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg 92 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLA 92 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 3444555556666666666666666666111344555555555555 4 6667777776666543 445555666
Q ss_pred HHHhc----cCChHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHh----hCChhHHHHHHHhccCC-CChHHHHHHH
Q 046221 463 NACGH----AGLTNDGLVIFNQMIEENKVKPS---QEHYGCVVDLLAR----AGCLSDASGLAGKLLEG-MGPNIWRALL 530 (572)
Q Consensus 463 ~~~~~----~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~~l~ 530 (572)
..|.. .+++++|+.+|+++.+. .|+ ...+..|..+|.. .+++++|..+|++..+. .++..+..|.
T Consensus 93 ~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg 169 (212)
T 3rjv_A 93 RVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAG 169 (212)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 66655 66677777777666432 222 4566666666666 56677777777766553 4555555555
Q ss_pred HHHhhhcC-----CHHHHHHHHHHHHhCCC
Q 046221 531 SGCVLHVG-----RFQDAEALRSGSQKKGI 555 (572)
Q Consensus 531 ~~~~~~~g-----~~~~A~~~~~~m~~~~~ 555 (572)
..+....| +.++|...+++..+.|.
T Consensus 170 ~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 170 MMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 55543222 66777777776666554
No 103
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.87 E-value=6.3e-08 Score=83.03 Aligned_cols=156 Identities=11% Similarity=0.043 Sum_probs=98.8
Q ss_pred HHHHhhhcCChHHHHHHHHHc-CCCCC-HhHHHH----------------HHHHHHhcCChHHHHHHHHHHHhcCCCC-C
Q 046221 394 LISSYSKCGNVDLAYIVFEEM-GFLRD-VVSWNT----------------IIYGYGVNGHGETALALYHKMTETGEVP-D 454 (572)
Q Consensus 394 l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~----------------l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~ 454 (572)
....+...|++++|+..|++. ...|+ ...|.. +..+|.+.|++++|+..|++..+. .| +
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~ 87 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--APNN 87 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCC
Confidence 344566778888888888776 33343 344555 677777788888888888887773 45 4
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCC--hhHHHHHHHhccCCCChH--HHHHHH
Q 046221 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGC--LSDASGLAGKLLEGMGPN--IWRALL 530 (572)
Q Consensus 455 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~--~~~~l~ 530 (572)
...+..+..++...|++++|+..|+++++.. |.+...+..+..+|...|+ .+.+...+++... |++. .+..+.
T Consensus 88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~g 164 (208)
T 3urz_A 88 VDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS-PTKMQYARYRDG 164 (208)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC-CCchhHHHHHHH
Confidence 5777777777888888888888888877644 3455577777777665543 3445566666553 3332 233333
Q ss_pred HHHhhhcCCHHHHHHHHHHHHhCCC
Q 046221 531 SGCVLHVGRFQDAEALRSGSQKKGI 555 (572)
Q Consensus 531 ~~~~~~~g~~~~A~~~~~~m~~~~~ 555 (572)
.++... |++++|+..|++..+..+
T Consensus 165 ~~~~~~-~~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 165 LSKLFT-TRYEKARNSLQKVILRFP 188 (208)
T ss_dssp HHHHHH-HTHHHHHHHHHHHTTTSC
T ss_pred HHHHHc-cCHHHHHHHHHHHHHhCC
Confidence 333334 778888888887766544
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.86 E-value=2.8e-08 Score=82.77 Aligned_cols=155 Identities=10% Similarity=0.013 Sum_probs=108.6
Q ss_pred HHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc-CCCCCHhHHHHHHHH-HHhcCChHH
Q 046221 361 TASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFLRDVVSWNTIIYG-YGVNGHGET 438 (572)
Q Consensus 361 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~-~~~~~~~~~ 438 (572)
..+...|+++.|...++...+.. +.+...+..+..++...|++++|...+++. ...|+...+..+... +...++...
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~ 92 (176)
T 2r5s_A 14 SELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESP 92 (176)
T ss_dssp HHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccch
Confidence 33444455555555554444332 445667778888899999999999999988 443444333332212 223233445
Q ss_pred HHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhc
Q 046221 439 ALALYHKMTETGEVP-DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKL 517 (572)
Q Consensus 439 A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 517 (572)
|+..+++..+ ..| +...+..+..++...|++++|+..|+++++...-..+...+..++.++...|+.++|...+++.
T Consensus 93 a~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 93 ELKRLEQELA--ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 7889999888 456 4688899999999999999999999999854422223558889999999999999999998875
Q ss_pred c
Q 046221 518 L 518 (572)
Q Consensus 518 ~ 518 (572)
.
T Consensus 171 l 171 (176)
T 2r5s_A 171 L 171 (176)
T ss_dssp H
T ss_pred H
Confidence 3
No 105
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.85 E-value=4.1e-06 Score=81.79 Aligned_cols=104 Identities=4% Similarity=-0.148 Sum_probs=67.5
Q ss_pred hcC-ChhhHHHHhccCCC--CChhhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHcCCCC-hHHHHH
Q 046221 17 KSG-KIKEAENLFDEIPE--KNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQN-LELARS 92 (572)
Q Consensus 17 ~~~-~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~-~~~a~~ 92 (572)
+.| +++.|+.+|++... |. ++++.+..+|++.... .|+...|...+.-..+.++ .+....
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp ------CCHHHHHHHHHHHHHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHH
T ss_pred HcCcchHHHHHHHHHHHHHCCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHH
Confidence 345 36777777766544 33 7899999999998874 5788888877776665553 355677
Q ss_pred HHHHHHHh-cCCCCcccCCCCCCceeHHHHHHHHH----hCCChHHHHHHHHHHHhC
Q 046221 93 IHGLMVKF-GLESDLFEGLKNPYLVSCNAIVAGFI----NNKLFQQAVLLFNFFRGS 144 (572)
Q Consensus 93 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~m~~~ 144 (572)
+|+..+.. |.. ..+...|...+..+. .+++.+.+.++|++....
T Consensus 70 ~fe~al~~vg~d--------~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~ 118 (493)
T 2uy1_A 70 VYEFTLGQFENY--------WDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT 118 (493)
T ss_dssp HHHHHHHHSTTC--------TTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHcCCC--------cccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC
Confidence 77777664 322 134567777776654 346788899999999873
No 106
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.85 E-value=4.7e-08 Score=100.14 Aligned_cols=185 Identities=11% Similarity=-0.012 Sum_probs=140.8
Q ss_pred HHcCChHHHHHHHHHHHh------cCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhc
Q 046221 328 VQNGCAREALNQFIKMRQ------EKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC 401 (572)
Q Consensus 328 ~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 401 (572)
...|++++|++.+++... ....+.+...+..+...+...|++++|...++.+.+.. +.+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 677888899988888751 03334455677777888888899999999998888765 55677888888899999
Q ss_pred CChHHHHHHHHHc-CCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChHHHHHHH
Q 046221 402 GNVDLAYIVFEEM-GFLR-DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNACGHAGLTNDGLVIF 478 (572)
Q Consensus 402 g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~ 478 (572)
|++++|.+.|++. ...| +...|..+..+|.+.|++++ +..|++..+. .| +...|..+..++.+.|++++|+..|
T Consensus 481 g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999988 3334 46778888889999999999 9999999884 56 4578888999999999999999999
Q ss_pred HHhHHhcCCCCC-hhHHHHHHHHHHhhCC--------hhHHHHHHHhccC
Q 046221 479 NQMIEENKVKPS-QEHYGCVVDLLARAGC--------LSDASGLAGKLLE 519 (572)
Q Consensus 479 ~~~~~~~~~~~~-~~~~~~l~~~~~~~g~--------~~~A~~~~~~~~~ 519 (572)
+++++. .|+ ...+..+..++...|+ +++|.+.+..+..
T Consensus 558 ~~al~l---~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~ 604 (681)
T 2pzi_A 558 DEVPPT---SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPP 604 (681)
T ss_dssp HTSCTT---STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCT
T ss_pred Hhhccc---CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCC
Confidence 988643 354 4577777777766444 6666666666643
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.84 E-value=1.4e-07 Score=85.40 Aligned_cols=164 Identities=9% Similarity=0.027 Sum_probs=126.0
Q ss_pred CHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc-CCCCCHhHHHHH-HHH
Q 046221 352 DSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFLRDVVSWNTI-IYG 429 (572)
Q Consensus 352 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l-~~~ 429 (572)
+...+..+...+...|+++.|...++...+.. +.+...+..+..++.+.|++++|...++++ ...|+....... ...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 33445555556666777777777777766654 456677788899999999999999999998 445665443333 333
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChh
Q 046221 430 YGVNGHGETALALYHKMTETGEVP-DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLS 508 (572)
Q Consensus 430 ~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 508 (572)
+...++.+.|+..+++..+. .| +...+..+...+...|++++|+..|+++++...-..+...+..++.+|...|+.+
T Consensus 195 l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 66778888899999999884 56 5688999999999999999999999999876522223668999999999999999
Q ss_pred HHHHHHHhcc
Q 046221 509 DASGLAGKLL 518 (572)
Q Consensus 509 ~A~~~~~~~~ 518 (572)
+|...+++..
T Consensus 273 ~a~~~~r~al 282 (287)
T 3qou_A 273 ALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 9999888753
No 108
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.80 E-value=2.5e-08 Score=80.33 Aligned_cols=141 Identities=14% Similarity=0.064 Sum_probs=104.5
Q ss_pred HHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc-CCCC-CHhHHHHHHHHHHhcCChHH
Q 046221 361 TASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFLR-DVVSWNTIIYGYGVNGHGET 438 (572)
Q Consensus 361 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~ 438 (572)
..+...|++++|...+....... +.+...+-.+...|.+.|++++|++.|++. .+.| +..+|..+..+|...|++++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHH
Confidence 34455667777777766554321 122334456888899999999999999988 3334 57889999999999999999
Q ss_pred HHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChHHHHHH-HHHhHHhcCCCCChhHHHHHHHHHHhhCC
Q 046221 439 ALALYHKMTETGEVP-DSSTYLSILNACGHAGLTNDGLVI-FNQMIEENKVKPSQEHYGCVVDLLARAGC 506 (572)
Q Consensus 439 A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 506 (572)
|+..|++..+ +.| +..++..+...|.+.|++++|.+. ++++++.. |-+..+|......+...|+
T Consensus 84 A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~--P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 84 AVECYRRSVE--LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF--PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhCc
Confidence 9999999998 467 468899999999999999877665 58887644 3455677777777777664
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.79 E-value=7.5e-08 Score=96.91 Aligned_cols=159 Identities=12% Similarity=0.024 Sum_probs=118.2
Q ss_pred cccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc-CCCC-CHhHHHHHHHHHHhcCChHHHHHHH
Q 046221 366 LAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFLR-DVVSWNTIIYGYGVNGHGETALALY 443 (572)
Q Consensus 366 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~ 443 (572)
.|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++. ...| +...+..+...|...|++++|...+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 478899999998887654 456788888999999999999999999998 4445 4778889999999999999999999
Q ss_pred HHHHhcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhh---CChhHHHHHHHhccC
Q 046221 444 HKMTETGEVP-DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARA---GCLSDASGLAGKLLE 519 (572)
Q Consensus 444 ~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~ 519 (572)
++..+. .| +...+..+..++...|++++|.+.++++++.. +.+...+..+..++... |++++|.+.++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 999985 45 56889999999999999999999999998654 44567888999999999 999999999999887
Q ss_pred -CCCh-HHHHHH
Q 046221 520 -GMGP-NIWRAL 529 (572)
Q Consensus 520 -~~~~-~~~~~l 529 (572)
.|+. ..|..+
T Consensus 157 ~~p~~~~~~~~l 168 (568)
T 2vsy_A 157 QGVGAVEPFAFL 168 (568)
T ss_dssp HTCCCSCHHHHT
T ss_pred cCCcccChHHHh
Confidence 4443 344433
No 110
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.79 E-value=1.6e-07 Score=81.65 Aligned_cols=185 Identities=11% Similarity=0.009 Sum_probs=106.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCC-HhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCch--hHHHHHH
Q 046221 319 SWTAIISGYVQNGCAREALNQFIKMRQEKTDSVD-SITLVSILTASGELAALEICLQLHGIAFEAGFPRYR--SVQNCLI 395 (572)
Q Consensus 319 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~ 395 (572)
.+..+...+.+.|++++|+..|+++....+..|. ...+..+..++.+.|+++.|...++.+.+....... ..+..+.
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 4455666777888888888888888744333332 345666667777777777777777777765422111 1233333
Q ss_pred HHhhhcCChHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH-HH-----------------
Q 046221 396 SSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDS-ST----------------- 457 (572)
Q Consensus 396 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~-~~----------------- 457 (572)
.++...|.. .+ ..|..+...+...|++++|+..|+++++. .|+. ..
T Consensus 86 ~~~~~~~~~-----~~---------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~~~ 149 (225)
T 2yhc_A 86 LTNMALDDS-----AL---------QGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKY 149 (225)
T ss_dssp HHHHHHHC----------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhh-----hh---------hhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHH
Confidence 333321100 00 00111111222344555555555555552 3332 11
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhhCChhHHHHHHHhccC
Q 046221 458 YLSILNACGHAGLTNDGLVIFNQMIEENKVKPS-QEHYGCVVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 458 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
...+...+.+.|++++|+..|+++++...-.|. ...+..+..+|.+.|++++|.+.++.+..
T Consensus 150 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 150 EYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 134566788899999999999999865421111 24677888999999999999999988765
No 111
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.78 E-value=3.7e-07 Score=78.61 Aligned_cols=130 Identities=8% Similarity=-0.122 Sum_probs=106.1
Q ss_pred HHHHHHhhhcCChHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCh
Q 046221 392 NCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLT 471 (572)
Q Consensus 392 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 471 (572)
..+...+...|++++|...|++. +.|+...|..+...|...|++++|+..|++..+.. +.+...+..+..++...|++
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAV-QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTS-SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH-cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 44667788899999999999988 34678889999999999999999999999998852 33568888999999999999
Q ss_pred HHHHHHHHHhHHhcCCCC--------------ChhHHHHHHHHHHhhCChhHHHHHHHhccC-CCCh
Q 046221 472 NDGLVIFNQMIEENKVKP--------------SQEHYGCVVDLLARAGCLSDASGLAGKLLE-GMGP 523 (572)
Q Consensus 472 ~~a~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~ 523 (572)
++|+..|+++++...-.+ ....+..+..+|.+.|++++|.+.++++.. .|+.
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 999999999976432111 126788889999999999999999999887 5543
No 112
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.77 E-value=1.4e-06 Score=79.33 Aligned_cols=158 Identities=9% Similarity=-0.078 Sum_probs=112.9
Q ss_pred HHHHhhhcCChHHHHHHHHHc-C---CCCCH----hHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-CC----HHHHHH
Q 046221 394 LISSYSKCGNVDLAYIVFEEM-G---FLRDV----VSWNTIIYGYGVNGHGETALALYHKMTETGEV-PD----SSTYLS 460 (572)
Q Consensus 394 l~~~~~~~g~~~~A~~~~~~~-~---~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~-p~----~~~~~~ 460 (572)
.+..+...|++++|...+++. . ..|+. ..+..+...+...+++++|+..+++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 366778899999999999987 2 22332 13334666677788999999999998874222 22 236888
Q ss_pred HHHHHhccCChHHHHHHHHHhHHhc----CCCCC-hhHHHHHHHHHHhhCChhHHHHHHHhccC----C---CC-hHHHH
Q 046221 461 ILNACGHAGLTNDGLVIFNQMIEEN----KVKPS-QEHYGCVVDLLARAGCLSDASGLAGKLLE----G---MG-PNIWR 527 (572)
Q Consensus 461 l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~---~~-~~~~~ 527 (572)
+...|...|++++|+.+++++++.. +..+. ..++..+..+|.+.|++++|.+.++++.+ . +. ...|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8889999999999999999887421 11122 23778888999999999999999998765 1 11 34566
Q ss_pred HHHHHHhhhcC-CHHHHHHHHHHHHh
Q 046221 528 ALLSGCVLHVG-RFQDAEALRSGSQK 552 (572)
Q Consensus 528 ~l~~~~~~~~g-~~~~A~~~~~~m~~ 552 (572)
.+...+... | .+++|.+.+++..+
T Consensus 241 ~lg~~~~~~-g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKL-EYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHT-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCcHHHHHHHHHHHHH
Confidence 666666666 8 46899888887753
No 113
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.76 E-value=1.7e-07 Score=72.75 Aligned_cols=99 Identities=14% Similarity=-0.003 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 046221 421 VSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVD 499 (572)
Q Consensus 421 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 499 (572)
..+......|.+.|++++|+..|++.++. .| +...|..+..++.+.|++++|+..++++++.. +.+...|..+..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~ 89 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD--SKFIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh--hhhhHHHHHHHH
Confidence 45666777788888888888888887773 45 55777778888888888888888888887644 445667777888
Q ss_pred HHHhhCChhHHHHHHHhccC-CCCh
Q 046221 500 LLARAGCLSDASGLAGKLLE-GMGP 523 (572)
Q Consensus 500 ~~~~~g~~~~A~~~~~~~~~-~~~~ 523 (572)
+|...|++++|.+.|++..+ .|+.
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l~P~~ 114 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQVDPSN 114 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHCCCHHHHHHHHHHHHHHCcCC
Confidence 88888888888888888776 4443
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.75 E-value=1.7e-07 Score=94.36 Aligned_cols=151 Identities=10% Similarity=-0.028 Sum_probs=114.9
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHH
Q 046221 330 NGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYI 409 (572)
Q Consensus 330 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 409 (572)
.|++++|+..+++.. ...+.+...+..+...+...|++++|...+++..+.. +.+...+..+..+|...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al--~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAV--RHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 478899999999985 2334457788888999999999999999999998764 4567888889999999999999999
Q ss_pred HHHHc-CCC-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhcc---CChHHHHHHHHHhHH
Q 046221 410 VFEEM-GFL-RDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNACGHA---GLTNDGLVIFNQMIE 483 (572)
Q Consensus 410 ~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~ 483 (572)
.+++. ... .+...+..+..+|.+.|++++|.+.|++..+. .| +...+..+..++... |++++|.+.++++++
T Consensus 79 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 99988 333 45778999999999999999999999999985 45 568888999999999 999999999999987
Q ss_pred hc
Q 046221 484 EN 485 (572)
Q Consensus 484 ~~ 485 (572)
..
T Consensus 157 ~~ 158 (568)
T 2vsy_A 157 QG 158 (568)
T ss_dssp HT
T ss_pred cC
Confidence 65
No 115
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.73 E-value=1.5e-06 Score=79.00 Aligned_cols=157 Identities=9% Similarity=-0.112 Sum_probs=87.3
Q ss_pred HHHHHhhhcCChHHHHHHHHHc-CCCC-CH------hHHHHHHHHHHhcCChHHHHHHHHHHHhcCC---CCC--HHHHH
Q 046221 393 CLISSYSKCGNVDLAYIVFEEM-GFLR-DV------VSWNTIIYGYGVNGHGETALALYHKMTETGE---VPD--SSTYL 459 (572)
Q Consensus 393 ~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~---~p~--~~~~~ 459 (572)
..+..+...|++++|.+.+++. ...+ .. ..+..+...+...|++++|+..+++..+... .+. ..+|+
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 3455566677777777766654 1111 11 1223344455666677777777776664311 111 23566
Q ss_pred HHHHHHhccCChHHHHHHHHHhHH---hcCCCCC--hhHHHHHHHHHHhhCChhHHHHHHHhccC-CCC-------hHHH
Q 046221 460 SILNACGHAGLTNDGLVIFNQMIE---ENKVKPS--QEHYGCVVDLLARAGCLSDASGLAGKLLE-GMG-------PNIW 526 (572)
Q Consensus 460 ~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-------~~~~ 526 (572)
.+...|...|++++|+..++++++ ..+-.+. ..++..++.+|.+.|++++|.+.+++... .++ ..+|
T Consensus 160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~ 239 (293)
T 2qfc_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 666777777777777777776652 2211111 13666667777777777777777776554 111 3345
Q ss_pred HHHHHHHhhhcCCHHHH-HHHHHHH
Q 046221 527 RALLSGCVLHVGRFQDA-EALRSGS 550 (572)
Q Consensus 527 ~~l~~~~~~~~g~~~~A-~~~~~~m 550 (572)
..+...+... |++++| ...+++.
T Consensus 240 ~~lg~~y~~~-g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 240 YQRGECLRKL-EYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCcHHHHHHHHHHH
Confidence 5555555544 777777 5555554
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.71 E-value=5.5e-07 Score=77.51 Aligned_cols=137 Identities=10% Similarity=-0.087 Sum_probs=112.3
Q ss_pred hhhHHHHHhhcCChhhHHHHhccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHcCCCCh
Q 046221 8 SSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNL 87 (572)
Q Consensus 8 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 87 (572)
+..+...+.+.|++++|+..|++...++...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 45677888899999999999999998899999999999999999999999999998875 45667888899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCccc--C----CCCCCceeHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 046221 88 ELARSIHGLMVKFGLESDLFE--G----LKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSG 145 (572)
Q Consensus 88 ~~a~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 145 (572)
++|...++...+..+...... . ........+..+...+...|++++|.+.|++..+..
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999998764211000 0 000112578888999999999999999999998764
No 117
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.71 E-value=3e-07 Score=84.30 Aligned_cols=197 Identities=10% Similarity=-0.080 Sum_probs=109.2
Q ss_pred cCChhHHHHHHhccCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHH
Q 046221 299 CGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGI 378 (572)
Q Consensus 299 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 378 (572)
.|++++|.+++++..+.....+ +...+++++|...|.+. ...+...|+++.|...+..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~------~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSF------MKWKPDYDSAASEYAKA----------------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCS------SSCSCCHHHHHHHHHHH----------------HHHHHHTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccc------cCCCCCHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHH
Confidence 4667777777765542100000 00034555555555443 2344555666666666655
Q ss_pred HHHhcCCC-----chhHHHHHHHHhhhcCChHHHHHHHHHc-------CCCC-CHhHHHHHHHHHHhcCChHHHHHHHHH
Q 046221 379 AFEAGFPR-----YRSVQNCLISSYSKCGNVDLAYIVFEEM-------GFLR-DVVSWNTIIYGYGVNGHGETALALYHK 445 (572)
Q Consensus 379 ~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 445 (572)
..+..... ....|+.+..+|.+.|++++|+..+++. +... ...++..+...|.. |++++|+..|++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 54432110 1335566666777777777777766655 1111 13456666666766 777777777777
Q ss_pred HHhcCC---CC--CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcC---CCCC-hhHHHHHHHHHHhhCChhHHHHHHHh
Q 046221 446 MTETGE---VP--DSSTYLSILNACGHAGLTNDGLVIFNQMIEENK---VKPS-QEHYGCVVDLLARAGCLSDASGLAGK 516 (572)
Q Consensus 446 ~~~~g~---~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 516 (572)
..+..- .+ ...++..+...|...|++++|+..|+++++... ..+. ...+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 665210 00 024566677777777777777777777764321 1111 12455556666667777777777777
Q ss_pred cc
Q 046221 517 LL 518 (572)
Q Consensus 517 ~~ 518 (572)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 65
No 118
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.70 E-value=1.7e-05 Score=71.49 Aligned_cols=179 Identities=8% Similarity=-0.004 Sum_probs=108.7
Q ss_pred cHHHHHHHHHHHHHhcCCCchhHHHHHHHHh----hhc---CChHHHHHHHHHc--CCCCCHhHHHHHHHHHHhcCChH-
Q 046221 368 ALEICLQLHGIAFEAGFPRYRSVQNCLISSY----SKC---GNVDLAYIVFEEM--GFLRDVVSWNTIIYGYGVNGHGE- 437 (572)
Q Consensus 368 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~- 437 (572)
++++++..++.+.... +-+..+|+.-...+ ... +++++++.+++++ ..+.+..+|+.-...+.+.|.++
T Consensus 84 ~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~ 162 (306)
T 3dra_A 84 NLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHND 162 (306)
T ss_dssp CHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTC
T ss_pred cHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccCh
Confidence 4555555554444433 23333333322222 333 5677777777777 33345666766666666667666
Q ss_pred -HHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCC------hHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhH
Q 046221 438 -TALALYHKMTETGEVP-DSSTYLSILNACGHAGL------TNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSD 509 (572)
Q Consensus 438 -~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 509 (572)
++++.++++.+. .| |...|+.-...+.+.|+ ++++++.++++++.. +-|...|+.+...+.+.|+..+
T Consensus 163 ~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~--p~n~SaW~y~~~ll~~~~~~~~ 238 (306)
T 3dra_A 163 AKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC--PQNPSTWNYLLGIHERFDRSIT 238 (306)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC--CCCccHHHHHHHHHHhcCCChH
Confidence 777777777774 34 55666666666666665 777777777777654 5566677777777777776433
Q ss_pred -HHHHHHhccC-----CCChHHHHHHHHHHhhhcCCHHHHHHHHHHHHh
Q 046221 510 -ASGLAGKLLE-----GMGPNIWRALLSGCVLHVGRFQDAEALRSGSQK 552 (572)
Q Consensus 510 -A~~~~~~~~~-----~~~~~~~~~l~~~~~~~~g~~~~A~~~~~~m~~ 552 (572)
+.++.+++.+ ..++..+..+...+... |+.++|+++++.+.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~-~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 239 QLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQ-KKYNESRTVYDLLKS 286 (306)
T ss_dssp GGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHHh
Confidence 5556666554 22445566666666555 778888888877764
No 119
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.69 E-value=6.7e-07 Score=73.34 Aligned_cols=126 Identities=16% Similarity=0.003 Sum_probs=85.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 046221 421 VSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVD 499 (572)
Q Consensus 421 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 499 (572)
..+..+...+...|++++|...|++..+. .| +..++..+..++...|++++|+..++++++.. +.+...+..+..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~ 89 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHH
Confidence 34556666777778888888888777774 34 45777777777778888888888888776543 345667777777
Q ss_pred HHHhhCChhHHHHHHHhccC-CC-ChHHHHHH--HHHHhhhcCCHHHHHHHHHHHH
Q 046221 500 LLARAGCLSDASGLAGKLLE-GM-GPNIWRAL--LSGCVLHVGRFQDAEALRSGSQ 551 (572)
Q Consensus 500 ~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l--~~~~~~~~g~~~~A~~~~~~m~ 551 (572)
++...|++++|...++++.. .| +...+..+ ...+... |++++|+..+++..
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ-KAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH-HHHHHHHHcccchH
Confidence 78888888888888887766 33 33344322 2224444 78888887777654
No 120
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.68 E-value=5.4e-07 Score=82.57 Aligned_cols=194 Identities=11% Similarity=-0.048 Sum_probs=139.7
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHH
Q 046221 330 NGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYI 409 (572)
Q Consensus 330 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 409 (572)
.|++++|.+++++..+... .. .+...++++.|...+... ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~--~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK--TS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC--CC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc--cc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 4677888888887763222 11 011146788887777654 456788999999999
Q ss_pred HHHHc-------CCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCC---CCC--HHHHHHHHHHHhccCChHHHHH
Q 046221 410 VFEEM-------GFLR-DVVSWNTIIYGYGVNGHGETALALYHKMTETGE---VPD--SSTYLSILNACGHAGLTNDGLV 476 (572)
Q Consensus 410 ~~~~~-------~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~---~p~--~~~~~~l~~~~~~~g~~~~a~~ 476 (572)
.+.+. +..+ -..+|+.+...|...|++++|+..|++..+.-. .|. ..++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 98877 2211 145788889999999999999999998765311 122 3577888888988 99999999
Q ss_pred HHHHhHHhcCCCCC----hhHHHHHHHHHHhhCChhHHHHHHHhccC----CCC----hHHHHHHHHHHhhhcCCHHHHH
Q 046221 477 IFNQMIEENKVKPS----QEHYGCVVDLLARAGCLSDASGLAGKLLE----GMG----PNIWRALLSGCVLHVGRFQDAE 544 (572)
Q Consensus 477 ~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~~l~~~~~~~~g~~~~A~ 544 (572)
.|+++++...-..+ ..++..+..+|.+.|++++|++.++++.. .+. ...+..+...+... |++++|.
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~-g~~~~A~ 215 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHR-ADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 99998754311111 35788899999999999999999999876 222 11344444445444 9999999
Q ss_pred HHHHHHH
Q 046221 545 ALRSGSQ 551 (572)
Q Consensus 545 ~~~~~m~ 551 (572)
..+++..
T Consensus 216 ~~~~~al 222 (307)
T 2ifu_A 216 KCVRESY 222 (307)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9999987
No 121
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.67 E-value=3e-07 Score=73.57 Aligned_cols=101 Identities=7% Similarity=-0.048 Sum_probs=71.6
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 046221 420 VVSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVV 498 (572)
Q Consensus 420 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 498 (572)
...+..+...+.+.|++++|+..|++..+ +.| +...|..+..+|...|++++|+..|+++++.. |.+...+..+.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--P~~~~~~~~lg 111 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--KNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--CCCcHHHHHHH
Confidence 44566666777777778888888777777 345 45677777777777788888888777777544 34455777777
Q ss_pred HHHHhhCChhHHHHHHHhccC-CCChH
Q 046221 499 DLLARAGCLSDASGLAGKLLE-GMGPN 524 (572)
Q Consensus 499 ~~~~~~g~~~~A~~~~~~~~~-~~~~~ 524 (572)
.+|.+.|++++|...|+++.. .|+..
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 777777888888877777766 55543
No 122
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.66 E-value=2.4e-07 Score=74.11 Aligned_cols=95 Identities=11% Similarity=0.006 Sum_probs=70.7
Q ss_pred hhHHHHHHHHhhhcCChHHHHHHHHHc-CCC-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-HHHHHHHHHH
Q 046221 388 RSVQNCLISSYSKCGNVDLAYIVFEEM-GFL-RDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD-SSTYLSILNA 464 (572)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~ 464 (572)
...+..+...+.+.|++++|...|++. ... .+...|..+..+|...|++++|+..|++..+ +.|+ ...|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~--l~P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA--LGKNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh--hCCCCcHHHHHHHHH
Confidence 445666677777888888888888877 332 3567777788888888888888888888877 4564 4777778888
Q ss_pred HhccCChHHHHHHHHHhHHh
Q 046221 465 CGHAGLTNDGLVIFNQMIEE 484 (572)
Q Consensus 465 ~~~~g~~~~a~~~~~~~~~~ 484 (572)
|...|++++|+..|+++++.
T Consensus 114 ~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888888753
No 123
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.66 E-value=3.9e-06 Score=76.28 Aligned_cols=166 Identities=11% Similarity=0.012 Sum_probs=92.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcC
Q 046221 323 IISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG 402 (572)
Q Consensus 323 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 402 (572)
.+..+...|++++|..++++........|+...+. ..+..+...+...|
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~-------------------------------~~~~~l~~~~~~~~ 129 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFL-------------------------------QWQYYVAAYVLKKV 129 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHH-------------------------------HHHHHHHHHHTTSS
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHH-------------------------------HHHHHHHHHHHccc
Confidence 35667788888888888888863222222211100 01122344444555
Q ss_pred ChHHHHHHHHHc----CCCCC----HhHHHHHHHHHHhcCChHHHHHHHHHHHhc-----CCCCCH-HHHHHHHHHHhcc
Q 046221 403 NVDLAYIVFEEM----GFLRD----VVSWNTIIYGYGVNGHGETALALYHKMTET-----GEVPDS-STYLSILNACGHA 468 (572)
Q Consensus 403 ~~~~A~~~~~~~----~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----g~~p~~-~~~~~l~~~~~~~ 468 (572)
++++|...+++. ...++ ..+++.+...|...|++++|+..|+++.+. +..+.. .++..+...|.+.
T Consensus 130 ~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~ 209 (293)
T 3u3w_A 130 DYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLD 209 (293)
T ss_dssp CHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH
Confidence 555555555554 11112 224666666666777777777766666531 112222 3566667777777
Q ss_pred CChHHHHHHHHHhHHhc---CCCCC-hhHHHHHHHHHHhhCC-hhHHHHHHHhccC
Q 046221 469 GLTNDGLVIFNQMIEEN---KVKPS-QEHYGCVVDLLARAGC-LSDASGLAGKLLE 519 (572)
Q Consensus 469 g~~~~a~~~~~~~~~~~---~~~~~-~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~ 519 (572)
|++++|+..++++++.. +..+. ..++..+..+|.+.|+ +++|.+.++++..
T Consensus 210 ~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 210 SRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 77777777777665322 11111 4466677777777773 4777777766554
No 124
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.64 E-value=2.1e-06 Score=73.64 Aligned_cols=160 Identities=6% Similarity=-0.163 Sum_probs=92.3
Q ss_pred HhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcC----ChHHHHHHHHHcCCCCCHhHHHHHHH
Q 046221 353 SITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG----NVDLAYIVFEEMGFLRDVVSWNTIIY 428 (572)
Q Consensus 353 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~l~~ 428 (572)
...+..+...+...+++++|...|+...+.| ++..+..+...|.. + ++++|.++|++.-..-+...+..|..
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~ 93 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAGSKSGEIVLAR 93 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3344444444444555555555555554443 33444445555555 4 66777777766622234555666666
Q ss_pred HHHh----cCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhc----cCChHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 046221 429 GYGV----NGHGETALALYHKMTETGEVP-DSSTYLSILNACGH----AGLTNDGLVIFNQMIEENKVKPSQEHYGCVVD 499 (572)
Q Consensus 429 ~~~~----~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 499 (572)
.|.. .+++++|+.+|++..+.|... +...+..|...|.. .+++++|+.+|+++.+. +.+...+..|..
T Consensus 94 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~a~~~Lg~ 170 (212)
T 3rjv_A 94 VLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL---SRTGYAEYWAGM 170 (212)
T ss_dssp HHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT---SCTTHHHHHHHH
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc---CCCHHHHHHHHH
Confidence 6665 667777777777777643110 14566666666665 66777777777777543 234445666666
Q ss_pred HHHhh-C-----ChhHHHHHHHhccC
Q 046221 500 LLARA-G-----CLSDASGLAGKLLE 519 (572)
Q Consensus 500 ~~~~~-g-----~~~~A~~~~~~~~~ 519 (572)
+|... | ++++|..++++..+
T Consensus 171 ~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 171 MFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp HHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 66543 2 67777777777653
No 125
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.64 E-value=3e-07 Score=71.33 Aligned_cols=102 Identities=9% Similarity=-0.030 Sum_probs=87.9
Q ss_pred CCCCH-HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC--CCChHHHH
Q 046221 451 EVPDS-STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE--GMGPNIWR 527 (572)
Q Consensus 451 ~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ 527 (572)
+.|+. ..+......|.+.|++++|++.|+++++.. +.+...|..+..+|.+.|++++|++.++++.+ +.+...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 56755 678888999999999999999999998765 55678999999999999999999999999988 45566788
Q ss_pred HHHHHHhhhcCCHHHHHHHHHHHHhCCC
Q 046221 528 ALLSGCVLHVGRFQDAEALRSGSQKKGI 555 (572)
Q Consensus 528 ~l~~~~~~~~g~~~~A~~~~~~m~~~~~ 555 (572)
.+...+... |++++|++.|++..+..+
T Consensus 86 ~lg~~~~~~-~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 86 RKAACLVAM-REWSKAQRAYEDALQVDP 112 (126)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHC-CCHHHHHHHHHHHHHHCc
Confidence 887777766 999999999999987654
No 126
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.61 E-value=1.2e-05 Score=72.48 Aligned_cols=217 Identities=6% Similarity=-0.127 Sum_probs=160.9
Q ss_pred HhhcCC-hhhHHHHhccCCC--C-ChhhHHHHHHHHhhCC--ChHHHHHHHHHHHHcCCCCCcchHHHHHHHH----cCC
Q 046221 15 YFKSGK-IKEAENLFDEIPE--K-NVVSWSIVIHGYSING--FHEKSMKAFSHMMLSGLLPNSFTMVGVLVAA----AGL 84 (572)
Q Consensus 15 ~~~~~~-~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~----~~~ 84 (572)
..+.|. .++|+.+++.+.. | +..+|+.--..+...+ +++++++.++.+.... +-+...|+.--..+ ...
T Consensus 42 ~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 42 LMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhc
Confidence 334454 4789999998875 3 3456777777777778 9999999999998864 44445666544444 434
Q ss_pred ---CChHHHHHHHHHHHHhcCCCCcccCCCCCCceeHHHHHHHHHhCCChH--HHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 046221 85 ---QNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQ--QAVLLFNFFRGSGLVPNAVTMLTVIRG 159 (572)
Q Consensus 85 ---g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~m~~~~~~p~~~~~~~ll~~ 159 (572)
++++++..+++.+.+..+ .|-.+|+.-.-.+.+.|.++ ++++.++++.+.... |...|+.-...
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~p----------kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~l 189 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSDP----------KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFL 189 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHCT----------TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhCC----------CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 789999999999998876 56678888777788888888 999999999986533 66677766666
Q ss_pred HhccCC------hHHHHHHHHHHHHhcCCCChhHHhHHHHHHHhCCCHHH-HHHHHhhcCC------CCcccHHHHHHHH
Q 046221 160 CVALGS------RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDA-AIQIFREMEC------KDVISWTRMMGLF 226 (572)
Q Consensus 160 ~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~------~~~~~~~~li~~~ 226 (572)
+...+. ++++.+.++.++... +-|.+.|+-+-..+.+.|+... +..+..++.+ .+...+..+...+
T Consensus 190 l~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~ 268 (306)
T 3dra_A 190 LFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIY 268 (306)
T ss_dssp HHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHH
T ss_pred HHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHH
Confidence 666665 788888888888876 6788888888888888877443 4455555433 3556777788888
Q ss_pred HccCCHHHHHHHHHHHHh
Q 046221 227 VDFEYAGDALKIFREMRK 244 (572)
Q Consensus 227 ~~~~~~~~a~~~~~~m~~ 244 (572)
.+.|+.++|.++++.+.+
T Consensus 269 ~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 269 TQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HccCCHHHHHHHHHHHHh
Confidence 888888888888888775
No 127
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.59 E-value=1.4e-06 Score=68.27 Aligned_cols=111 Identities=12% Similarity=-0.024 Sum_probs=72.1
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHH
Q 046221 419 DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCV 497 (572)
Q Consensus 419 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 497 (572)
+...|..+...+...|++++|...|++..+. .| +...+..+...+...|++++|+..++++++.. +.+...+..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l 90 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE--PTFIKGYTRK 90 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCchHHHHHH
Confidence 3455666677777777777777777777763 34 45667777777777777777777777776543 3445667777
Q ss_pred HHHHHhhCChhHHHHHHHhccC-CCC-hHHHHHHHHHH
Q 046221 498 VDLLARAGCLSDASGLAGKLLE-GMG-PNIWRALLSGC 533 (572)
Q Consensus 498 ~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~ 533 (572)
..++.+.|++++|.+.+++... .|+ ...+..+...+
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 128 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCM 128 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 7777777777777777777665 333 33444444333
No 128
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.59 E-value=1.2e-06 Score=79.78 Aligned_cols=126 Identities=13% Similarity=0.032 Sum_probs=88.4
Q ss_pred HHHHhhhcCChHHHHHHHHHc-CC-----CCC--HhHHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCC-----HHHHH
Q 046221 394 LISSYSKCGNVDLAYIVFEEM-GF-----LRD--VVSWNTIIYGYGVNGHGETALALYHKMTET-GEVPD-----SSTYL 459 (572)
Q Consensus 394 l~~~~~~~g~~~~A~~~~~~~-~~-----~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-g~~p~-----~~~~~ 459 (572)
+...+...|++++|...+++. .. .+. ..+|+.+...|...|++++|+..|++..+. ...|+ ..++.
T Consensus 121 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~ 200 (293)
T 2qfc_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHH
Confidence 555667778888888887776 11 111 347778888888888999898888887731 01222 15778
Q ss_pred HHHHHHhccCChHHHHHHHHHhHHhc---CCCC-ChhHHHHHHHHHHhhCChhHH-HHHHHhccC
Q 046221 460 SILNACGHAGLTNDGLVIFNQMIEEN---KVKP-SQEHYGCVVDLLARAGCLSDA-SGLAGKLLE 519 (572)
Q Consensus 460 ~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 519 (572)
.+...|...|++++|+..++++++.. +... -..++..+..+|.+.|++++| ...++++..
T Consensus 201 nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 88888889999999999888876432 1111 145778888888899999888 777777654
No 129
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.58 E-value=6.2e-07 Score=69.65 Aligned_cols=106 Identities=12% Similarity=0.037 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCC-CCC----hhHH
Q 046221 421 VSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKV-KPS----QEHY 494 (572)
Q Consensus 421 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~----~~~~ 494 (572)
..+..+...+.+.|++++|+..|++.++ +.| +...|..+..+|...|++++|+..++++++...- .++ ..+|
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 4566777888888888888888888887 456 4577888888888888888888888888754311 111 1356
Q ss_pred HHHHHHHHhhCChhHHHHHHHhccC-CCChHHHHH
Q 046221 495 GCVVDLLARAGCLSDASGLAGKLLE-GMGPNIWRA 528 (572)
Q Consensus 495 ~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~ 528 (572)
..+..++...|++++|++.|++... .|++.....
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~~ 121 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKK 121 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcCHHHHHH
Confidence 6777888888888888888888766 666655443
No 130
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.58 E-value=5.1e-07 Score=83.75 Aligned_cols=62 Identities=10% Similarity=-0.007 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC
Q 046221 456 STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 456 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
.+|..+..+|.+.|++++|+..++++++.. +.+...+..+..+|...|++++|...|+++.+
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 258 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELD--SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 258 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444444445555555555555555554332 22334444455555555555555555555444
No 131
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.58 E-value=4e-07 Score=82.12 Aligned_cols=191 Identities=11% Similarity=-0.084 Sum_probs=120.0
Q ss_pred hHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc-CCCC-CHhHHHHHHHHHH
Q 046221 354 ITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFLR-DVVSWNTIIYGYG 431 (572)
Q Consensus 354 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~ 431 (572)
..+..+...+...|+++.|...++...+.. +.+...+..+..+|.+.|++++|...+++. ...| +...+..+..+|.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344444555555666666666666555543 446677788888999999999999999988 4444 4678888899999
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHH
Q 046221 432 VNGHGETALALYHKMTETGEVPDS-STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510 (572)
Q Consensus 432 ~~~~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 510 (572)
..|++++|+..|++..+. .|+. ..+...+....+ ...+.... .. +....+.+......+... ..|++++|
T Consensus 84 ~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~---~~~~~~~~-~~-~~~~~~~~~~i~~~l~~l--~~~~~~~A 154 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSL--AKEQRLNFGDDIPSALR---IAKKKRWN-SI-EERRIHQESELHSYLTRL--IAAERERE 154 (281)
T ss_dssp HTTCHHHHHHHHHHHHHH--HHHTTCCCCSHHHHHHH---HHHHHHHH-HH-HHTCCCCCCHHHHHHHHH--HHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHH---HHHHHHHH-HH-HHHHHhhhHHHHHHHHHH--HHHHHHHH
Confidence 999999999999998873 3422 111112222111 11112222 22 223345555555555443 37899999
Q ss_pred HHHHHhccC-CCChHHH-HHHHHHHhhhcCCHHHHHHHHHHHHhCC
Q 046221 511 SGLAGKLLE-GMGPNIW-RALLSGCVLHVGRFQDAEALRSGSQKKG 554 (572)
Q Consensus 511 ~~~~~~~~~-~~~~~~~-~~l~~~~~~~~g~~~~A~~~~~~m~~~~ 554 (572)
.+.++++.+ .|+.... ..+...+....+++++|.++|++..+..
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 999998887 5554433 3333333333477889999998876643
No 132
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.58 E-value=1.3e-06 Score=71.61 Aligned_cols=125 Identities=9% Similarity=-0.016 Sum_probs=98.0
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHc--CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHh
Q 046221 390 VQNCLISSYSKCGNVDLAYIVFEEM--GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNACG 466 (572)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~ 466 (572)
.+..+...+...|++++|...+++. ..+.+...+..+...+...|++++|...+++..+. .| +...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHH
Confidence 4555677788899999999999887 23345778888888999999999999999999885 44 5678888889999
Q ss_pred ccCChHHHHHHHHHhHHhcCCCCChhHH--HHHHHHHHhhCChhHHHHHHHhcc
Q 046221 467 HAGLTNDGLVIFNQMIEENKVKPSQEHY--GCVVDLLARAGCLSDASGLAGKLL 518 (572)
Q Consensus 467 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~ 518 (572)
..|++++|...++++++.. +.+...+ ...+..+.+.|++++|.+.+.+..
T Consensus 93 ~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 9999999999999998654 2344444 344445778899999998887654
No 133
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.57 E-value=2.2e-06 Score=66.14 Aligned_cols=97 Identities=18% Similarity=0.258 Sum_probs=60.4
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 046221 420 VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVD 499 (572)
Q Consensus 420 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 499 (572)
...|..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|..+++++++.. +.+...+..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHH
Confidence 3455556666666666777776666666531 2244566666666666677777777776665432 334556666666
Q ss_pred HHHhhCChhHHHHHHHhccC
Q 046221 500 LLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 500 ~~~~~g~~~~A~~~~~~~~~ 519 (572)
++...|++++|...++++..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHH
Confidence 66677777777777666655
No 134
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.57 E-value=1.9e-06 Score=73.37 Aligned_cols=154 Identities=13% Similarity=0.028 Sum_probs=89.3
Q ss_pred cccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc-------CCCC-CHhHHHHHHHHHHhcCC
Q 046221 364 GELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-------GFLR-DVVSWNTIIYGYGVNGH 435 (572)
Q Consensus 364 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~-~~~~~~~l~~~~~~~~~ 435 (572)
...|+++.|.+.++.+.. ........+..+...+...|++++|...+++. +..+ ....+..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 345677777774444322 11234556666777777777777777777665 1211 23456666667777777
Q ss_pred hHHHHHHHHHHHhc----CCCC--CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCh----hHHHHHHHHHHhhC
Q 046221 436 GETALALYHKMTET----GEVP--DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQ----EHYGCVVDLLARAG 505 (572)
Q Consensus 436 ~~~A~~~~~~~~~~----g~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g 505 (572)
+++|...+++..+. +-.| ....+..+...+...|++++|...+++.++...-..+. .++..+..++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 77777777766552 1011 12446666667777777777777777765322111121 23456666777777
Q ss_pred ChhHHHHHHHhcc
Q 046221 506 CLSDASGLAGKLL 518 (572)
Q Consensus 506 ~~~~A~~~~~~~~ 518 (572)
++++|.+.+++..
T Consensus 162 ~~~~A~~~~~~al 174 (203)
T 3gw4_A 162 NLLEAQQHWLRAR 174 (203)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 7777777777665
No 135
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.56 E-value=3e-07 Score=73.67 Aligned_cols=106 Identities=11% Similarity=0.042 Sum_probs=87.7
Q ss_pred HHHHc-CCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcC
Q 046221 410 VFEEM-GFLR-DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNACGHAGLTNDGLVIFNQMIEENK 486 (572)
Q Consensus 410 ~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 486 (572)
.++++ ...| +...+..+...+...|++++|+..|++.... .| +...|..+..+|...|++++|+..|+++++..
T Consensus 9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~- 85 (148)
T 2vgx_A 9 TIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD- 85 (148)
T ss_dssp SHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred hHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 34444 4444 3556777888899999999999999999884 55 66888889999999999999999999998654
Q ss_pred CCCChhHHHHHHHHHHhhCChhHHHHHHHhccC
Q 046221 487 VKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 487 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
+.+...+..+..+|...|++++|.+.|+++..
T Consensus 86 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 86 -IXEPRFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp -TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44667888899999999999999999999877
No 136
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.54 E-value=1.7e-06 Score=67.34 Aligned_cols=96 Identities=17% Similarity=0.044 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 046221 421 VSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDL 500 (572)
Q Consensus 421 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 500 (572)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++++.. +.+...+..+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID--PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--ccCHHHHHHHHHH
Confidence 344455555556666666666666655531 2234555555556666666666666666655432 2334455555666
Q ss_pred HHhhCChhHHHHHHHhccC
Q 046221 501 LARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 501 ~~~~g~~~~A~~~~~~~~~ 519 (572)
+.+.|++++|...++++..
T Consensus 90 ~~~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHh
Confidence 6666666666666666554
No 137
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.53 E-value=2.9e-06 Score=66.40 Aligned_cols=118 Identities=10% Similarity=-0.021 Sum_probs=96.4
Q ss_pred CCchhHHHHHHHHhhhcCChHHHHHHHHHc-CCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHH
Q 046221 385 PRYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFLR-DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSI 461 (572)
Q Consensus 385 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l 461 (572)
+.+...+..+...+...|++++|...+++. ...| +...+..+...|...|++++|+..+++..+. .| +...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL--EPTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCchHHHHHH
Confidence 345566777888899999999999999998 4434 6788888999999999999999999999985 44 56888999
Q ss_pred HHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCC
Q 046221 462 LNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGC 506 (572)
Q Consensus 462 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 506 (572)
..++...|++++|...++++++.. +.+...+..+..++.+.|+
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLD--SSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--GGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhcC
Confidence 999999999999999999998654 3345577777777776653
No 138
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.53 E-value=3.2e-06 Score=65.18 Aligned_cols=115 Identities=17% Similarity=0.214 Sum_probs=89.3
Q ss_pred hhHHHHHHHHhhhcCChHHHHHHHHHc--CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 046221 388 RSVQNCLISSYSKCGNVDLAYIVFEEM--GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465 (572)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 465 (572)
...+..+...+...|++++|.+.++++ ..+.+...+..+...+...|++++|...++++.+.. +.+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 456667788888899999999999887 233457788888899999999999999999998852 33667888899999
Q ss_pred hccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhC
Q 046221 466 GHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAG 505 (572)
Q Consensus 466 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 505 (572)
...|++++|...++++++.. +.+...+..+..++.+.|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELD--PNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHhcc
Confidence 99999999999999987654 345556666666655443
No 139
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.52 E-value=4.4e-07 Score=72.73 Aligned_cols=97 Identities=11% Similarity=-0.103 Sum_probs=73.2
Q ss_pred chhHHHHHHHHhhhcCChHHHHHHHHHc--CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHH
Q 046221 387 YRSVQNCLISSYSKCGNVDLAYIVFEEM--GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILN 463 (572)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~ 463 (572)
+...+..+...+.+.|++++|...|++. ..+.+...|..+..+|...|++++|+..|++..+. .| +...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM--DIXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCchHHHHHHH
Confidence 3445566777788888888888888877 23245677777888888888888888888888873 45 4477777888
Q ss_pred HHhccCChHHHHHHHHHhHHhc
Q 046221 464 ACGHAGLTNDGLVIFNQMIEEN 485 (572)
Q Consensus 464 ~~~~~g~~~~a~~~~~~~~~~~ 485 (572)
++...|++++|+..|+++++..
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 8888888888888888887654
No 140
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.51 E-value=3.9e-06 Score=73.72 Aligned_cols=127 Identities=10% Similarity=-0.083 Sum_probs=61.0
Q ss_pred HHHHhhhcCChHHHHHHHHHc-CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHhccCC
Q 046221 394 LISSYSKCGNVDLAYIVFEEM-GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD--SSTYLSILNACGHAGL 470 (572)
Q Consensus 394 l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~ 470 (572)
+...+...|++++|.++|+.+ ...|+....-.+...+.+.+++++|+..|+...... .|. ...+..+..++...|+
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~ 186 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLAL 186 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCC
Confidence 344455555666666665555 222332233333444555556666665555433310 110 1244555555555666
Q ss_pred hHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhhCChhHHHHHHHhccC-CCC
Q 046221 471 TNDGLVIFNQMIEENKVKPS--QEHYGCVVDLLARAGCLSDASGLAGKLLE-GMG 522 (572)
Q Consensus 471 ~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~ 522 (572)
+++|+..|+++. .....|. .........++.+.|+.++|...|+++.. .|+
T Consensus 187 ~~eAl~~l~~a~-~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 187 FTEAERRLTEAN-DSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHH-TSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHh-cCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 666666665553 2212122 22344445555555666666666655554 444
No 141
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.51 E-value=7.6e-07 Score=74.02 Aligned_cols=123 Identities=8% Similarity=0.058 Sum_probs=93.7
Q ss_pred hhhcCChHHHHHHHHHc--CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHH-HhccCCh--
Q 046221 398 YSKCGNVDLAYIVFEEM--GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNA-CGHAGLT-- 471 (572)
Q Consensus 398 ~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~-~~~~g~~-- 471 (572)
+...|++++|...+++. ..+.+...|..+...|...|++++|...|++..+. .| +...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcch
Confidence 55678888888888877 33346778888889999999999999999998884 44 56777778887 7788888
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC-CCChH
Q 046221 472 NDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE-GMGPN 524 (572)
Q Consensus 472 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~ 524 (572)
++|...++++++.. +.+...+..+..+|...|++++|...++++.. .|+..
T Consensus 98 ~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 98 AQTRAMIDKALALD--SNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 99999999988654 44566788888899999999999999998876 44443
No 142
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.51 E-value=3.3e-06 Score=65.69 Aligned_cols=116 Identities=10% Similarity=-0.020 Sum_probs=94.7
Q ss_pred hhHHHHHHHHhhhcCChHHHHHHHHHc--CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHH
Q 046221 388 RSVQNCLISSYSKCGNVDLAYIVFEEM--GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNA 464 (572)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~ 464 (572)
...+..+...+...|++++|...+++. ..+.+...+..+...+...|++++|...+++..+. .| +...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHHHH
Confidence 445666778888899999999999987 33346778888899999999999999999999885 45 56888889999
Q ss_pred HhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCCh
Q 046221 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCL 507 (572)
Q Consensus 465 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 507 (572)
+...|++++|...++++++.. +.+...+..+..++.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD--PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHhcC
Confidence 999999999999999998654 44666788888888887765
No 143
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.51 E-value=3.5e-06 Score=73.98 Aligned_cols=130 Identities=11% Similarity=-0.140 Sum_probs=89.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC--hhHHHHHHH
Q 046221 422 SWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPS--QEHYGCVVD 499 (572)
Q Consensus 422 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~ 499 (572)
.+-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...+ .. .|. ...+..+..
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~-d~~~~~~a~~~LG~ 179 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-WP-DKFLAGAAGVAHGV 179 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-CS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-cC-CcccHHHHHHHHHH
Confidence 3445566777888888888888887763 46544555666678888888888888886642 11 121 236777888
Q ss_pred HHHhhCChhHHHHHHHhccCC---CC--hHHHHHHHHHHhhhcCCHHHHHHHHHHHHhCCCC
Q 046221 500 LLARAGCLSDASGLAGKLLEG---MG--PNIWRALLSGCVLHVGRFQDAEALRSGSQKKGII 556 (572)
Q Consensus 500 ~~~~~g~~~~A~~~~~~~~~~---~~--~~~~~~l~~~~~~~~g~~~~A~~~~~~m~~~~~~ 556 (572)
++...|++++|++.|++.... |. +..+..+...+... |+.++|..+|+++.+..+.
T Consensus 180 al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~l-Gr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 180 AAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQ-GNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHSCC
T ss_pred HHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCc
Confidence 888888888888888888653 32 12333344444444 8888888888888877654
No 144
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.50 E-value=6.1e-07 Score=74.59 Aligned_cols=120 Identities=9% Similarity=0.039 Sum_probs=85.2
Q ss_pred hcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc-C-CCCCHhHHHHHHHH-HHhcCCh--H
Q 046221 363 SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM-G-FLRDVVSWNTIIYG-YGVNGHG--E 437 (572)
Q Consensus 363 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~-~~~~~~~--~ 437 (572)
+...|+++.|...++...+.. +.+...+..+..+|...|++++|...|++. . .+.+...+..+..+ |...|++ +
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 455677788888887777664 456677777888888888888888888877 2 22345667777777 6677887 8
Q ss_pred HHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhc
Q 046221 438 TALALYHKMTETGEVP-DSSTYLSILNACGHAGLTNDGLVIFNQMIEEN 485 (572)
Q Consensus 438 ~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 485 (572)
+|...++++.+. .| +...+..+...+...|++++|...|+++++..
T Consensus 99 ~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALAL--DSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 888888888874 45 45777778888888888888888888887543
No 145
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.50 E-value=1e-06 Score=75.01 Aligned_cols=98 Identities=16% Similarity=0.065 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHh---cCCCC--C
Q 046221 421 VSWNTIIYGYGVNGHGETALALYHKMTET----GEVP-DSSTYLSILNACGHAGLTNDGLVIFNQMIEE---NKVKP--S 490 (572)
Q Consensus 421 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~--~ 490 (572)
..+..+...|...|++++|...+++..+. +..| ...++..+...+...|++++|...++++++. .+-.| .
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 34444444444455555555544444331 1111 1133444444444555555555554444332 11011 1
Q ss_pred hhHHHHHHHHHHhhCChhHHHHHHHhcc
Q 046221 491 QEHYGCVVDLLARAGCLSDASGLAGKLL 518 (572)
Q Consensus 491 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 518 (572)
...+..+...+...|++++|.+.+++..
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 2234444444445555555555544443
No 146
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.50 E-value=2.2e-06 Score=66.42 Aligned_cols=96 Identities=14% Similarity=0.016 Sum_probs=74.7
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 046221 420 VVSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVV 498 (572)
Q Consensus 420 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 498 (572)
...|..+...+.+.|++++|+..|++..+. .| +...|..+..++.+.|++++|+..++++++.. +.+...+..+.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg 79 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHH
Confidence 345666777788888888888888888874 44 56778888888888888888888888887654 44566778888
Q ss_pred HHHHhhCChhHHHHHHHhccC
Q 046221 499 DLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 499 ~~~~~~g~~~~A~~~~~~~~~ 519 (572)
.++...|++++|.+.++++..
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHH
Confidence 888888888888888888765
No 147
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.48 E-value=2e-07 Score=79.19 Aligned_cols=152 Identities=9% Similarity=-0.051 Sum_probs=88.7
Q ss_pred hhhcCChHHHHHHHHHc--CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-----------------HHHH
Q 046221 398 YSKCGNVDLAYIVFEEM--GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD-----------------SSTY 458 (572)
Q Consensus 398 ~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~-----------------~~~~ 458 (572)
....|+++.+.+.++.. ........+..+...+...|++++|+..|++..+. .|+ ...+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp --------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HhcccccchhhHHHHHHHHHHHHH
Confidence 33445555555554432 11112345666677777888888888888887763 221 2567
Q ss_pred HHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC-CC-ChHHHHHHHHHHhhh
Q 046221 459 LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE-GM-GPNIWRALLSGCVLH 536 (572)
Q Consensus 459 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~ 536 (572)
..+..+|...|++++|+..++++++.. +.+...+..+..+|...|++++|.+.|+++.. .| +...+..+...+...
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKID--KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL 169 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 777888888888888888888887653 44566788888888888888888888888776 44 444555554444433
Q ss_pred cCCHHHHH-HHHHHHHhCC
Q 046221 537 VGRFQDAE-ALRSGSQKKG 554 (572)
Q Consensus 537 ~g~~~~A~-~~~~~m~~~~ 554 (572)
++.+++. ..+..|...+
T Consensus 170 -~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 170 -KEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp -HHHHC-------------
T ss_pred -HHHHHHHHHHHHHHhccc
Confidence 6666555 4555554433
No 148
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.44 E-value=6.9e-06 Score=62.45 Aligned_cols=96 Identities=14% Similarity=0.012 Sum_probs=73.0
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 046221 420 VVSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVV 498 (572)
Q Consensus 420 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 498 (572)
...+..+...+...|++++|...+++..+. .| +...+..+...+...|++++|...++++++.. +.+...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a 79 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--PDWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC--cccHHHHHHHH
Confidence 455667777778888888888888888774 34 56777777788888888888888888887543 34566777788
Q ss_pred HHHHhhCChhHHHHHHHhccC
Q 046221 499 DLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 499 ~~~~~~g~~~~A~~~~~~~~~ 519 (572)
.++...|++++|.+.+++..+
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 888888888888888888776
No 149
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=6.4e-06 Score=65.80 Aligned_cols=97 Identities=12% Similarity=-0.077 Sum_probs=70.4
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHH
Q 046221 419 DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD----SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY 494 (572)
Q Consensus 419 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 494 (572)
+...+..+...+...|++++|...|++..+ ..|+ ...+..+..++...|++++|+..++++++.. +.+...+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~ 102 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD--GGDVKAL 102 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--SCCHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--ccCHHHH
Confidence 455666777777777888888888887776 3565 4666777777778888888888888776543 3355667
Q ss_pred HHHHHHHHhhCChhHHHHHHHhccC
Q 046221 495 GCVVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 495 ~~l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
..+..++...|++++|...+++...
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777778888888888888887766
No 150
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.41 E-value=2.8e-06 Score=67.46 Aligned_cols=96 Identities=10% Similarity=0.018 Sum_probs=75.1
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 046221 420 VVSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVV 498 (572)
Q Consensus 420 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 498 (572)
...+..+...+.+.|++++|+..|++.... .| +...|..+..++...|++++|+..|+++++.. +.+...+..+.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg 93 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD--INEPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcHHHHHHH
Confidence 345556677788888888888888888874 45 55777888888888888888888888887654 44556777888
Q ss_pred HHHHhhCChhHHHHHHHhccC
Q 046221 499 DLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 499 ~~~~~~g~~~~A~~~~~~~~~ 519 (572)
.+|...|++++|.+.++++..
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 888888888888888888776
No 151
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.41 E-value=1.6e-06 Score=68.86 Aligned_cols=109 Identities=11% Similarity=-0.057 Sum_probs=86.2
Q ss_pred HHHHHHhcCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC-
Q 046221 442 LYHKMTETGEVPDS-STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE- 519 (572)
Q Consensus 442 ~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 519 (572)
.|+++.+ +.|+. ..+..+...+.+.|++++|+..|+++++.. +.+...|..+..+|.+.|++++|...++++..
T Consensus 6 ~l~~al~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 81 (142)
T 2xcb_A 6 TLAMLRG--LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALM 81 (142)
T ss_dssp ---CCTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHc--CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3444444 45543 667778888999999999999999998655 45777899999999999999999999999987
Q ss_pred -CCChHHHHHHHHHHhhhcCCHHHHHHHHHHHHhCCC
Q 046221 520 -GMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGI 555 (572)
Q Consensus 520 -~~~~~~~~~l~~~~~~~~g~~~~A~~~~~~m~~~~~ 555 (572)
+.++..|..+...+... |++++|...|++..+..+
T Consensus 82 ~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 82 DINEPRFPFHAAECHLQL-GDLDGAESGFYSARALAA 117 (142)
T ss_dssp CTTCTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCC
Confidence 44556677777767666 999999999999877654
No 152
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.39 E-value=3e-06 Score=78.55 Aligned_cols=127 Identities=10% Similarity=-0.020 Sum_probs=103.1
Q ss_pred hhHHHHHHHHhhhcCChHHHHHHHHHc-CCCCC----------------HhHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 046221 388 RSVQNCLISSYSKCGNVDLAYIVFEEM-GFLRD----------------VVSWNTIIYGYGVNGHGETALALYHKMTETG 450 (572)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g 450 (572)
...+..+...+.+.|++++|...|++. ...|+ ...|..+..+|.+.|++++|+..+++.++.
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 225 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL- 225 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 445666777888888888888888877 22233 478889999999999999999999999984
Q ss_pred CCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHH-HHHHHhcc
Q 046221 451 EVP-DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA-SGLAGKLL 518 (572)
Q Consensus 451 ~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 518 (572)
.| +...|..+..+|...|++++|+..|+++++.. +.+...+..+..++.+.|+.++| ...+++|.
T Consensus 226 -~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 -DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55 56889999999999999999999999998654 44567888899999999999988 44555554
No 153
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.37 E-value=3.3e-06 Score=63.65 Aligned_cols=97 Identities=12% Similarity=0.031 Sum_probs=60.7
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC--ChhHHHHH
Q 046221 420 VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKP--SQEHYGCV 497 (572)
Q Consensus 420 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~l 497 (572)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|+..++++++.. +. +...+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~l 82 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI--EDEYNKDVWAAK 82 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccchHHHHHHH
Confidence 3445556666666777777777777666631 2244566666666667777777777777665432 22 45566666
Q ss_pred HHHHHhh-CChhHHHHHHHhccC
Q 046221 498 VDLLARA-GCLSDASGLAGKLLE 519 (572)
Q Consensus 498 ~~~~~~~-g~~~~A~~~~~~~~~ 519 (572)
..++.+. |++++|.+.+++...
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhh
Confidence 6666677 777777777766655
No 154
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.36 E-value=1.9e-06 Score=79.96 Aligned_cols=99 Identities=14% Similarity=0.007 Sum_probs=53.8
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC-CCC-hHHHHHHHHHHh
Q 046221 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE-GMG-PNIWRALLSGCV 534 (572)
Q Consensus 457 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~ 534 (572)
.|..+..+|.+.|++++|+..++++++.. +.+...+..+..+|...|++++|...|+++.. .|+ ...+..+.....
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~ 309 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE--EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAE 309 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 77888889999999999999999998654 44677889999999999999999999999987 444 444555544433
Q ss_pred hhcCCHHHHHHHHHHHHhCCCCC
Q 046221 535 LHVGRFQDAEALRSGSQKKGIIK 557 (572)
Q Consensus 535 ~~~g~~~~A~~~~~~m~~~~~~~ 557 (572)
...+..+.+...+++|.+.....
T Consensus 310 ~~~~~~~~a~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 310 QEKALYQKQKEMYKGIFKGKDEG 332 (338)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHhhCCCCCC
Confidence 34477888889999887766543
No 155
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.34 E-value=4.9e-06 Score=64.72 Aligned_cols=110 Identities=15% Similarity=0.079 Sum_probs=76.4
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCC-CCC----hhHH
Q 046221 420 VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKV-KPS----QEHY 494 (572)
Q Consensus 420 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~----~~~~ 494 (572)
...|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++++++...- .++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 3456667777778888888888888877742 335567777777888888888888888877654311 111 5567
Q ss_pred HHHHHHHHhhCChhHHHHHHHhccC-CCChHHHHHHH
Q 046221 495 GCVVDLLARAGCLSDASGLAGKLLE-GMGPNIWRALL 530 (572)
Q Consensus 495 ~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~ 530 (572)
..+..++.+.|++++|.+.++++.. .|++..+..+.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~ 119 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 7777888888888888888888776 55655544443
No 156
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.34 E-value=6.7e-06 Score=64.74 Aligned_cols=98 Identities=10% Similarity=-0.057 Sum_probs=72.3
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHH
Q 046221 418 RDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGC 496 (572)
Q Consensus 418 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 496 (572)
.+...|..+...+...|++++|+..|++..+. .| +...+..+..++...|++++|+..++++++.. +.+...+..
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~ 82 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFF 82 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--chhHHHHHH
Confidence 34566777777778888888888888877774 34 45777777777888888888888888777543 345667777
Q ss_pred HHHHHHhhCChhHHHHHHHhccC
Q 046221 497 VVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 497 l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
+..++...|++++|...++++..
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Confidence 77888888888888888887765
No 157
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.34 E-value=0.00016 Score=69.85 Aligned_cols=164 Identities=10% Similarity=-0.106 Sum_probs=100.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHh----HHHHHHHHhcccccHHHHHHHHHHHHHh----cCC-CchhH
Q 046221 320 WTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSI----TLVSILTASGELAALEICLQLHGIAFEA----GFP-RYRSV 390 (572)
Q Consensus 320 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~ 390 (572)
+..+...|...|++++|.+.+..+....+..++.. ....+-..+...|+.+.+..++...... +.. .-..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 45566666677777777776666553322222221 1222223344556777777776655432 111 22446
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHc-----CC--CC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhc--CCC-C-C--HH
Q 046221 391 QNCLISSYSKCGNVDLAYIVFEEM-----GF--LR-DVVSWNTIIYGYGVNGHGETALALYHKMTET--GEV-P-D--SS 456 (572)
Q Consensus 391 ~~~l~~~~~~~g~~~~A~~~~~~~-----~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--g~~-p-~--~~ 456 (572)
+..+...|...|++++|..++++. +. .+ ....+..++..|...|++++|..++++.... .+. | . ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 667788888888888888888776 11 12 2456777778888888888888888776542 111 1 1 24
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHH
Q 046221 457 TYLSILNACGHAGLTNDGLVIFNQMIE 483 (572)
Q Consensus 457 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 483 (572)
.+..+...+...|++++|...|.++.+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 456666677788888888887777654
No 158
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.33 E-value=0.00037 Score=63.44 Aligned_cols=216 Identities=10% Similarity=-0.015 Sum_probs=137.1
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccc-cHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhc-C-ChHH
Q 046221 330 NGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELA-ALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKC-G-NVDL 406 (572)
Q Consensus 330 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~ 406 (572)
.+..++|+++++++....+. +...++.--..+...+ .+++++.+++.+.... +-+..+|+.-..++.+. + ++++
T Consensus 67 ~e~se~AL~lt~~~L~~nP~--~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMNPA--HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TCCSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred CCCCHHHHHHHHHHHHhCch--hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHH
Confidence 33445666666666532222 2223333333333444 4677777777766544 45566666655556555 6 7889
Q ss_pred HHHHHHHc--CCCCCHhHHHHHHHHHHhcCChH--------HHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCC-----
Q 046221 407 AYIVFEEM--GFLRDVVSWNTIIYGYGVNGHGE--------TALALYHKMTETGEVP-DSSTYLSILNACGHAGL----- 470 (572)
Q Consensus 407 A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~----- 470 (572)
++++++++ ..+.+...|+.-...+.+.|.++ ++++.++++.+. .| |...|+.....+.+.++
T Consensus 144 EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 144 EIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccch
Confidence 99999888 34346777776655555555555 889999999885 44 66888888888777776
Q ss_pred --hHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCCh--------------------hHHHHHHHhccC-C-------
Q 046221 471 --TNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCL--------------------SDASGLAGKLLE-G------- 520 (572)
Q Consensus 471 --~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~-~------- 520 (572)
++++++.++++++.. +-|...|+-+-..+.+.|+. .+..++..++.. .
T Consensus 222 ~~~~eELe~~~~aI~~~--P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLI--PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPL 299 (349)
T ss_dssp HHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCS
T ss_pred HHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCC
Confidence 688999999888765 55667777776667666654 334444444443 2
Q ss_pred CChHHHHHHHHHHhhhcCCHHHHHHHHHHHHhC
Q 046221 521 MGPNIWRALLSGCVLHVGRFQDAEALRSGSQKK 553 (572)
Q Consensus 521 ~~~~~~~~l~~~~~~~~g~~~~A~~~~~~m~~~ 553 (572)
+.+..+..|+..+... |+.++|.++++.+.++
T Consensus 300 ~s~~al~~l~d~~~~~-~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 300 PVPLALEYLADSFIEQ-NRVDDAAKVFEKLSSE 331 (349)
T ss_dssp CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhh
Confidence 3444566777777666 9999999999998643
No 159
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.33 E-value=1.9e-05 Score=76.39 Aligned_cols=195 Identities=9% Similarity=-0.093 Sum_probs=136.2
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCCCH---------------hHHHHHHHHhcccccHHHHHHHHHHHHHhcC-CCch
Q 046221 325 SGYVQNGCAREALNQFIKMRQEKTDSVDS---------------ITLVSILTASGELAALEICLQLHGIAFEAGF-PRYR 388 (572)
Q Consensus 325 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~ 388 (572)
..+.+.|++++|++.|..+.+......+. ..+..+...|...|++++|.+.+..+....- .+..
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 34556677777777777776433322221 2367788899999999999999987765321 1221
Q ss_pred ----hHHHHHHHHhhhcCChHHHHHHHHHc-------CCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhc--CC--C
Q 046221 389 ----SVQNCLISSYSKCGNVDLAYIVFEEM-------GFLRD-VVSWNTIIYGYGVNGHGETALALYHKMTET--GE--V 452 (572)
Q Consensus 389 ----~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--g~--~ 452 (572)
.+.+.+...+...|+.+.|..+++.. +..+. ..++..+...|...|++++|..+++++... +. .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 23344445556778999999988876 22232 567788899999999999999999887653 11 2
Q ss_pred CC-HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhhCChhHHHHHHHhccC
Q 046221 453 PD-SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPS-----QEHYGCVVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 453 p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
|. ..++..++..|...|++++|..++++++....-.++ ...+..++..+...|++++|...+.+..+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 22 367888899999999999999999987643211121 23566777888899999999988877654
No 160
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.33 E-value=5.6e-06 Score=67.67 Aligned_cols=94 Identities=10% Similarity=-0.050 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 046221 422 SWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDL 500 (572)
Q Consensus 422 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 500 (572)
.|..+...+...|++++|+..|++..+. .| +...|..+..+|...|++++|+..++++++.. +.+...|..+..+
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 3444444444555555555555554442 23 33444444455555555555555555554332 2233444445555
Q ss_pred HHhhCChhHHHHHHHhccC
Q 046221 501 LARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 501 ~~~~g~~~~A~~~~~~~~~ 519 (572)
|.+.|++++|.+.|+++..
T Consensus 89 ~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 5555555555555554444
No 161
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.32 E-value=5e-06 Score=62.57 Aligned_cols=101 Identities=12% Similarity=0.090 Sum_probs=82.8
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC-CCC---hHHHHHH
Q 046221 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE-GMG---PNIWRAL 529 (572)
Q Consensus 454 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~---~~~~~~l 529 (572)
+...+..+...+...|++++|...++++++.. +.+...+..+..++...|++++|.+.++++.. .|+ ...|..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 34677788889999999999999999998654 45677889999999999999999999999887 454 5556555
Q ss_pred HHHHhhhc-CCHHHHHHHHHHHHhCCCCC
Q 046221 530 LSGCVLHV-GRFQDAEALRSGSQKKGIIK 557 (572)
Q Consensus 530 ~~~~~~~~-g~~~~A~~~~~~m~~~~~~~ 557 (572)
...+ ... |++++|.+.+++..+.....
T Consensus 83 ~~~~-~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 83 ADAL-RYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHH-TTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHH-HHHhCCHHHHHHHHHHHhhcccCC
Confidence 5444 678 99999999999998877653
No 162
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.32 E-value=1e-05 Score=66.05 Aligned_cols=112 Identities=11% Similarity=-0.040 Sum_probs=91.0
Q ss_pred chhHHHHHHHHhhhcCChHHHHHHHHHc-CCC-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHH
Q 046221 387 YRSVQNCLISSYSKCGNVDLAYIVFEEM-GFL-RDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILN 463 (572)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~ 463 (572)
+...+..+...+.+.|++++|+..|++. ... .+...|..+..+|...|++++|+..|++.++. .| +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 4567788889999999999999999998 333 36788999999999999999999999999984 56 4688999999
Q ss_pred HHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 046221 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDL 500 (572)
Q Consensus 464 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 500 (572)
+|...|++++|+..|+++++...-.++......+..+
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 124 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETT 124 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 9999999999999999998766433433333344333
No 163
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.32 E-value=5.6e-06 Score=64.18 Aligned_cols=103 Identities=13% Similarity=0.045 Sum_probs=80.9
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHc-CCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--------HHHHH
Q 046221 390 VQNCLISSYSKCGNVDLAYIVFEEM-GFLR-DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD--------SSTYL 459 (572)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~--------~~~~~ 459 (572)
.+..+...+.+.|++++|+..|++. .+.| +...|..+..+|.+.|++++|+..+++.++. .|+ ..+|.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV--GRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh--CcccchhhHHHHHHHH
Confidence 4456778889999999999999987 3334 5778888999999999999999999998873 232 24677
Q ss_pred HHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHH
Q 046221 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCV 497 (572)
Q Consensus 460 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 497 (572)
.+..++...|++++|++.|++.++. .|+..+...+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~---~~~~~~~~~l 122 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE---FRDPELVKKV 122 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---SCCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh---CcCHHHHHHH
Confidence 7888899999999999999998864 4676655443
No 164
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.32 E-value=6.9e-06 Score=63.58 Aligned_cols=97 Identities=10% Similarity=0.021 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC-CC-ChHHHHHHHHH
Q 046221 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE-GM-GPNIWRALLSG 532 (572)
Q Consensus 455 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~ 532 (572)
...+..+...+.+.|++++|+..|+++++.. +.+...+..+..++.+.|++++|...++++.. .| ++..|..+...
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 3567778888999999999999999998755 55678899999999999999999999999988 44 56677777777
Q ss_pred HhhhcCCHHHHHHHHHHHHhCC
Q 046221 533 CVLHVGRFQDAEALRSGSQKKG 554 (572)
Q Consensus 533 ~~~~~g~~~~A~~~~~~m~~~~ 554 (572)
+... |++++|...+++..+..
T Consensus 82 ~~~~-~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 82 QIAV-KEYASALETLDAARTKD 102 (126)
T ss_dssp HHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHHH-hCHHHHHHHHHHHHHhC
Confidence 7766 99999999999987755
No 165
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.30 E-value=3.7e-06 Score=64.50 Aligned_cols=91 Identities=7% Similarity=-0.086 Sum_probs=48.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 046221 425 TIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLAR 503 (572)
Q Consensus 425 ~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 503 (572)
.+...+.+.|++++|+..|++..+. .| +...|..+..++...|++++|+..|+++++.. +-+...+..+..++.+
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Confidence 3444455555556666555555552 33 33555555555555566666666555555432 2234455555555555
Q ss_pred hCChhHHHHHHHhccC
Q 046221 504 AGCLSDASGLAGKLLE 519 (572)
Q Consensus 504 ~g~~~~A~~~~~~~~~ 519 (572)
.|++++|...++++.+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555543
No 166
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.30 E-value=5e-06 Score=63.78 Aligned_cols=96 Identities=8% Similarity=-0.147 Sum_probs=79.4
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC-CC-ChHHHHHHHHHHh
Q 046221 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE-GM-GPNIWRALLSGCV 534 (572)
Q Consensus 457 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~ 534 (572)
.+..+...+.+.|++++|+..++++++.. +.+...|..+..++.+.|++++|+..++++.. .| ++..|..+...+.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 35566778899999999999999998765 45777899999999999999999999999988 44 5667777777777
Q ss_pred hhcCCHHHHHHHHHHHHhCCC
Q 046221 535 LHVGRFQDAEALRSGSQKKGI 555 (572)
Q Consensus 535 ~~~g~~~~A~~~~~~m~~~~~ 555 (572)
.. |++++|+..+++..+..+
T Consensus 97 ~~-g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 97 NE-HNANAALASLRAWLLSQP 116 (121)
T ss_dssp HH-HHHHHHHHHHHHHHC---
T ss_pred Hc-CCHHHHHHHHHHHHHhCc
Confidence 66 999999999999877654
No 167
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.30 E-value=5e-06 Score=67.58 Aligned_cols=130 Identities=10% Similarity=-0.031 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC----hh
Q 046221 422 SWNTIIYGYGVNGHGETALALYHKMTETGEV-PD----SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPS----QE 492 (572)
Q Consensus 422 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~ 492 (572)
++..+...|...|++++|+..+++..+..-. ++ ..++..+...+...|++++|...++++++...-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4455555566666666666666665542100 11 134555666666667777776666665532211111 23
Q ss_pred HHHHHHHHHHhhCChhHHHHHHHhccC----CCC----hHHHHHHHHHHhhhcCCHHHHHHHHHHHHh
Q 046221 493 HYGCVVDLLARAGCLSDASGLAGKLLE----GMG----PNIWRALLSGCVLHVGRFQDAEALRSGSQK 552 (572)
Q Consensus 493 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~~l~~~~~~~~g~~~~A~~~~~~m~~ 552 (572)
.+..+..++...|++++|.+.+++... ..+ ...+..+...+... |++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL-GNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHH
Confidence 455566666677777777776666543 111 12344444444444 777777777776543
No 168
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.28 E-value=3.4e-06 Score=75.97 Aligned_cols=158 Identities=8% Similarity=-0.098 Sum_probs=106.4
Q ss_pred chhHHHHHHHHhhhcCChHHHHHHHHHc-CCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHH
Q 046221 387 YRSVQNCLISSYSKCGNVDLAYIVFEEM-GFLR-DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILN 463 (572)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~ 463 (572)
+...+..+...+.+.|++++|...|++. ...| +...|..+..+|.+.|++++|+..+++..+ +.| +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 4456677888899999999999999988 3334 678889999999999999999999999998 456 5588899999
Q ss_pred HHhccCChHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhhCChhHHHHHHHhccCCCChHHHHHHHHHHhhhcCCHHH
Q 046221 464 ACGHAGLTNDGLVIFNQMIEENKVKPSQ-EHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQD 542 (572)
Q Consensus 464 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~ 542 (572)
++...|++++|+..|+++++.. |+. ..+...+....+..+...... ......+.++.....+ ..+. . |++++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~---p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l~-~-~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA---KEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRLI-A-AERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH---HHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHHH-H-HHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC---ccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHHH-H-HHHHH
Confidence 9999999999999999987643 221 111112222222221111111 1222224444443333 3332 3 78888
Q ss_pred HHHHHHHHHhC
Q 046221 543 AEALRSGSQKK 553 (572)
Q Consensus 543 A~~~~~~m~~~ 553 (572)
|++.+++..+.
T Consensus 154 A~~~~~~al~~ 164 (281)
T 2c2l_A 154 ELEECQRNHEG 164 (281)
T ss_dssp HHTTTSGGGTT
T ss_pred HHHHHHhhhcc
Confidence 88777665443
No 169
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.27 E-value=1.1e-05 Score=62.62 Aligned_cols=96 Identities=10% Similarity=0.015 Sum_probs=67.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC---hhHHHH
Q 046221 424 NTIIYGYGVNGHGETALALYHKMTETGEVPDS----STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPS---QEHYGC 496 (572)
Q Consensus 424 ~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~ 496 (572)
..+...+...|++++|...|+++.+. .|+. ..+..+..++...|++++|+..++++++.. +.+ ...+..
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~ 81 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHH
Confidence 34556677778888888888887774 3432 366677777888888888888888877543 222 455677
Q ss_pred HHHHHHhhCChhHHHHHHHhccC-CCCh
Q 046221 497 VVDLLARAGCLSDASGLAGKLLE-GMGP 523 (572)
Q Consensus 497 l~~~~~~~g~~~~A~~~~~~~~~-~~~~ 523 (572)
+..++.+.|++++|...++++.. .|+.
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~~p~~ 109 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQYPGS 109 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 77788888888888888887766 4443
No 170
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.26 E-value=1.4e-05 Score=62.77 Aligned_cols=101 Identities=12% Similarity=-0.049 Sum_probs=85.9
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC--CCChHHHHHHH
Q 046221 453 PDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE--GMGPNIWRALL 530 (572)
Q Consensus 453 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~ 530 (572)
.+...+..+...+...|++++|+..|+++++.. +.+...+..+..++...|++++|...++++.. +.++..|..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 356888999999999999999999999998654 45677899999999999999999999999887 44566777777
Q ss_pred HHHhhhcCCHHHHHHHHHHHHhCCCC
Q 046221 531 SGCVLHVGRFQDAEALRSGSQKKGII 556 (572)
Q Consensus 531 ~~~~~~~g~~~~A~~~~~~m~~~~~~ 556 (572)
..+... |++++|...+++..+....
T Consensus 85 ~~~~~~-~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEM-ESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-hhHHHHHHHHHHHHHHChh
Confidence 777766 9999999999998765543
No 171
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=98.25 E-value=7.6e-08 Score=88.44 Aligned_cols=262 Identities=16% Similarity=0.141 Sum_probs=154.6
Q ss_pred CCcchhhHHHHHhhcCChhhHHHHhccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHcC
Q 046221 4 DPYNSSKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAG 83 (572)
Q Consensus 4 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 83 (572)
.+.+|+.|..+..+.|++.+|++.| +...|+..|..+|.+..+.|.+++-+..+.-.++..-.| ..=+.|+-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHh
Confidence 4566777777777777777766654 333556667777777777777777777666655542222 233456666666
Q ss_pred CCChHHHHHHHHHHHHhcCCCCcccCCCCCCceeHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcc
Q 046221 84 LQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163 (572)
Q Consensus 84 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 163 (572)
.++..+...++ ..||+.--..+..-|...|.++.|.-+|..+
T Consensus 129 ~~rL~elEefl----------------~~~N~A~iq~VGDrcf~e~lYeAAKilys~i---------------------- 170 (624)
T 3lvg_A 129 TNRLAELEEFI----------------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------------------- 170 (624)
T ss_dssp SCSSSTTTSTT----------------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGS----------------------
T ss_pred hCcHHHHHHHH----------------cCCCcccHHHHHHHHHHccCHHHHHHHHHhC----------------------
Confidence 66654433221 1244444455555555555555544333322
Q ss_pred CChHHHHHHHHHHHHhcCCCChhHHhHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHccCCHHHHHHHHHHHH
Q 046221 164 GSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMR 243 (572)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 243 (572)
.-|..|...+++.|++..|.+.-++. .++.+|-.+-.+|+..+.+.-|.-.--.+.
T Consensus 171 ----------------------sN~akLAstLV~L~~yq~AVdaArKA--ns~ktWKeV~~ACvd~~EfrLAqicGLniI 226 (624)
T 3lvg_A 171 ----------------------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV 226 (624)
T ss_dssp ----------------------CCCTTTSSSSSSCSGGGSSTTTTTTC--CSSCSHHHHTHHHHHSCTTTTTTHHHHHHH
T ss_pred ----------------------ccHHHHHHHHHHHHHHHHHHHHHHhc--CChhHHHHHHHHHhCchHHHHHHHhcchhc
Confidence 12333344455555655555433322 567778888888888887776655443333
Q ss_pred hCCCCCCccchHHHHHHhcccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHHHHHHhccCC----C----
Q 046221 244 KSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITE----K---- 315 (572)
Q Consensus 244 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~---- 315 (572)
........++..|-..|.+++.+.+++.-.... .....+|+-|.-.|+|- +.++..+.++.... |
T Consensus 227 -----vhadeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKvir 299 (624)
T 3lvg_A 227 -----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLR 299 (624)
T ss_dssp -----CCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHH
T ss_pred -----ccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHH
Confidence 223334456667788888888888877665322 45566788888778775 45555555544322 2
Q ss_pred ---CcchHHHHHHHHHHcCChHHHHH
Q 046221 316 ---SLVSWTAIISGYVQNGCAREALN 338 (572)
Q Consensus 316 ---~~~~~~~l~~~~~~~~~~~~a~~ 338 (572)
....|.-++-.|.+-.+++.|..
T Consensus 300 acE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 300 AAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 33578888888888888887753
No 172
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.25 E-value=2.7e-05 Score=59.04 Aligned_cols=107 Identities=12% Similarity=0.022 Sum_probs=82.3
Q ss_pred hhHHHHHHHHhhhcCChHHHHHHHHHc--CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHH
Q 046221 388 RSVQNCLISSYSKCGNVDLAYIVFEEM--GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNA 464 (572)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~ 464 (572)
...+..+...+...|++++|...+++. ..+.+...+..+...+...|++++|...+++..+. .| +...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 345566777888899999999999887 33346778888888999999999999999998885 45 56788888899
Q ss_pred HhccCChHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 046221 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVV 498 (572)
Q Consensus 465 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 498 (572)
+...|++++|...++++++.. +.+...+..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~ 113 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHE--ANNPQLKEGLQ 113 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcC--CCCHHHHHHHH
Confidence 999999999999999887533 23344444443
No 173
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.25 E-value=3.5e-05 Score=61.35 Aligned_cols=111 Identities=11% Similarity=0.007 Sum_probs=88.6
Q ss_pred CchhHHHHHHHHhhhcCChHHHHHHHHHc-CCCCC----HhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHH
Q 046221 386 RYRSVQNCLISSYSKCGNVDLAYIVFEEM-GFLRD----VVSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYL 459 (572)
Q Consensus 386 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~ 459 (572)
.+...+..+...+...|++++|...|++. ...|+ ...|..+..+|...|++++|+..+++..+. .| +...+.
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~ 103 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKALY 103 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHHHH
Confidence 34566777888889999999999999988 65576 677888889999999999999999999884 45 567888
Q ss_pred HHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 046221 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDL 500 (572)
Q Consensus 460 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 500 (572)
.+..++...|++++|...|+++++.. +.+...+..+...
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~ 142 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLE--PKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHH
Confidence 89999999999999999999998644 3334444444443
No 174
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.22 E-value=1.5e-05 Score=64.88 Aligned_cols=108 Identities=9% Similarity=-0.032 Sum_probs=75.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhc--------C--------CCCC-HHHHHHHHHHHhccCChHHHHHHHHHhHH
Q 046221 421 VSWNTIIYGYGVNGHGETALALYHKMTET--------G--------EVPD-SSTYLSILNACGHAGLTNDGLVIFNQMIE 483 (572)
Q Consensus 421 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------g--------~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 483 (572)
..+......+.+.|++++|+..|.+.++. . ..|. ...|..+..+|.+.|++++|+..++++++
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34555566667777777777777776653 0 0232 25677788888888888888888888876
Q ss_pred hcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC-CCChH-HHHHHH
Q 046221 484 ENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE-GMGPN-IWRALL 530 (572)
Q Consensus 484 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~-~~~~l~ 530 (572)
.. +.+...|..+..+|...|++++|...+++... .|+.. .....+
T Consensus 92 ~~--p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l 138 (162)
T 3rkv_A 92 RE--ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREM 138 (162)
T ss_dssp HS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred cC--CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 54 44566788888888888888888888888877 55544 433333
No 175
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.21 E-value=9.3e-06 Score=78.77 Aligned_cols=118 Identities=12% Similarity=0.007 Sum_probs=57.0
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHc-CCCCC----------------HhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 046221 390 VQNCLISSYSKCGNVDLAYIVFEEM-GFLRD----------------VVSWNTIIYGYGVNGHGETALALYHKMTETGEV 452 (572)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~ 452 (572)
.+..+...+.+.|++++|...|++. ...|+ ...|..+..+|.+.|++++|+..+++.++. .
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~ 347 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL--D 347 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--S
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--C
Confidence 4444555555566666666655555 11111 244455555555555555555555555552 2
Q ss_pred C-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHH
Q 046221 453 P-DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDAS 511 (572)
Q Consensus 453 p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 511 (572)
| +...|..+..+|...|++++|+..|+++++.. +-+...+..+..++.+.|+.++|.
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------CHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3 33455555555555555555555555554322 222334444555555555554444
No 176
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.21 E-value=0.00011 Score=66.79 Aligned_cols=221 Identities=10% Similarity=-0.055 Sum_probs=147.3
Q ss_pred HHHHHhhcCChhhHHHHhccCCC---CChhhHHHHHHHHhhCC-ChHHHHHHHHHHHHcCCCCCcchHHHHHHHHcCC-C
Q 046221 11 LLSNYFKSGKIKEAENLFDEIPE---KNVVSWSIVIHGYSING-FHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGL-Q 85 (572)
Q Consensus 11 l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-g 85 (572)
+.....+.+..++|+++++.+.. .+..+|+.--..+...+ .+++++.+++.+.... +-+...|+.-...+... +
T Consensus 60 ~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 60 FRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISP 138 (349)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcC
Confidence 33344445566899999998876 34556777777777777 5999999999999864 44556777666666554 5
Q ss_pred -ChHHHHHHHHHHHHhcCCCCcccCCCCCCceeHHHHHHHHHhCCChH--------HHHHHHHHHHhCCCCCCHhhHHHH
Q 046221 86 -NLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQ--------QAVLLFNFFRGSGLVPNAVTMLTV 156 (572)
Q Consensus 86 -~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~m~~~~~~p~~~~~~~l 156 (572)
+++++..+++.+++..+ .|-.+|+--.-.+.+.|.++ ++++.++++.+..+ -|...|+.-
T Consensus 139 ~~~~~EL~~~~k~L~~dp----------kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R 207 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLLPDP----------KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWR 207 (349)
T ss_dssp SCCHHHHHHHHHHTSSCT----------TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred CChHHHHHHHHHHHHhCC----------CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 78999999999887654 55667776655555555555 89999999988643 367778877
Q ss_pred HHHHhccCC-------hHHHHHHHHHHHHhcCCCChhHHhHHHHHHHhCCCH--------------------HHHHHHHh
Q 046221 157 IRGCVALGS-------RALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDL--------------------DAAIQIFR 209 (572)
Q Consensus 157 l~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------------------~~a~~~~~ 209 (572)
...+.+.+. ++++.+.+...+... +-|...|+-+-..+.+.|+. ........
T Consensus 208 ~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (349)
T 3q7a_A 208 WYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGF 286 (349)
T ss_dssp HHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------C
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHH
Confidence 777777765 577888888888765 66778887777777666653 22222222
Q ss_pred hcCC---------CCcccHHHHHHHHHccCCHHHHHHHHHHHHh
Q 046221 210 EMEC---------KDVISWTRMMGLFVDFEYAGDALKIFREMRK 244 (572)
Q Consensus 210 ~~~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 244 (572)
.+.. ++......++..|...|+.++|.++++.+.+
T Consensus 287 ~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 287 PMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 2221 2334455556666666666666666666543
No 177
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.19 E-value=0.00079 Score=61.00 Aligned_cols=78 Identities=10% Similarity=0.044 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcC--ChHHHHHHHHHc--CCCCCHhHHHHHHHHHHhcCC-hHHHHHHHH
Q 046221 370 EICLQLHGIAFEAGFPRYRSVQNCLISSYSKCG--NVDLAYIVFEEM--GFLRDVVSWNTIIYGYGVNGH-GETALALYH 444 (572)
Q Consensus 370 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~ 444 (572)
+.+..+++.+.... +-+..+|+.-.-++.+.| .+++++.+++.+ ..+.+...|+.-...+...|. ++++++.++
T Consensus 91 ~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 91 KAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 33444444444332 333444443333344444 245555555555 222344444444444444444 355555555
Q ss_pred HHHh
Q 046221 445 KMTE 448 (572)
Q Consensus 445 ~~~~ 448 (572)
++++
T Consensus 170 ~~I~ 173 (331)
T 3dss_A 170 SLIT 173 (331)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5555
No 178
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.18 E-value=2.7e-05 Score=65.90 Aligned_cols=125 Identities=10% Similarity=-0.000 Sum_probs=93.2
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHc-CCCC-C----------------HhHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 046221 390 VQNCLISSYSKCGNVDLAYIVFEEM-GFLR-D----------------VVSWNTIIYGYGVNGHGETALALYHKMTETGE 451 (572)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~ 451 (572)
.+..+...+.+.|++++|...|++. ...| + ...|..+..+|...|++++|+..+++..+.
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-- 117 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI-- 117 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--
Confidence 3455677788889999999888887 2212 1 267888889999999999999999999985
Q ss_pred CC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHH-HHHHhcc
Q 046221 452 VP-DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDAS-GLAGKLL 518 (572)
Q Consensus 452 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~ 518 (572)
.| +...+..+..++...|++++|+..|+++++.. +-+...+..+..++...++.+++. ..+..+.
T Consensus 118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45 56888999999999999999999999998654 445667888888888888777776 4444443
No 179
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.18 E-value=1.2e-05 Score=62.45 Aligned_cols=111 Identities=15% Similarity=0.083 Sum_probs=82.4
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHHc--CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCC--CCC----HHHHHH
Q 046221 389 SVQNCLISSYSKCGNVDLAYIVFEEM--GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGE--VPD----SSTYLS 460 (572)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~--~p~----~~~~~~ 460 (572)
..+..+...+...|++++|...+++. ..+.+...+..+...|...|++++|...++++.+... .++ ..++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34556777788888888888888887 3334567788888888889999999999988877421 122 667888
Q ss_pred HHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 046221 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLA 502 (572)
Q Consensus 461 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 502 (572)
+..++...|++++|...|+++++. .|+......+..+..
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~ 123 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE---HRTPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh---CCCHHHHHHHHHHHH
Confidence 888899999999999999988754 356666555555443
No 180
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.16 E-value=1.3e-05 Score=65.14 Aligned_cols=129 Identities=17% Similarity=0.068 Sum_probs=90.1
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHc-C---CCCC----HhHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCC----HH
Q 046221 390 VQNCLISSYSKCGNVDLAYIVFEEM-G---FLRD----VVSWNTIIYGYGVNGHGETALALYHKMTETGE-VPD----SS 456 (572)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~-~p~----~~ 456 (572)
++..+...+...|++++|...+++. . ..++ ...+..+...|...|++++|...+++..+..- .++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4455667777788888888877766 1 1111 24677778888888999999988888765310 111 35
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhhCChhHHHHHHHhcc
Q 046221 457 TYLSILNACGHAGLTNDGLVIFNQMIEENKVKPS----QEHYGCVVDLLARAGCLSDASGLAGKLL 518 (572)
Q Consensus 457 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 518 (572)
.+..+...+...|++++|...++++++...-..+ ...+..+...+...|++++|.+.+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 6777788888999999999998887643211111 3467778888899999999999888765
No 181
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.15 E-value=2.2e-06 Score=65.38 Aligned_cols=85 Identities=16% Similarity=0.158 Sum_probs=57.5
Q ss_pred cCChHHHHHHHHHHHhcCC-CCC-HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHH
Q 046221 433 NGHGETALALYHKMTETGE-VPD-SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510 (572)
Q Consensus 433 ~~~~~~A~~~~~~~~~~g~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 510 (572)
.|++++|+..|++.++.+. .|+ ...+..+..+|...|++++|+..|+++++.. +-+...+..+..++.+.|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHcCCHHHH
Confidence 4677777788877777321 243 3667777777778888888888888777544 34456777777778888888888
Q ss_pred HHHHHhccC
Q 046221 511 SGLAGKLLE 519 (572)
Q Consensus 511 ~~~~~~~~~ 519 (572)
.+.+++...
T Consensus 81 ~~~~~~al~ 89 (117)
T 3k9i_A 81 VELLLKIIA 89 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888777766
No 182
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.12 E-value=2.9e-05 Score=75.65 Aligned_cols=117 Identities=9% Similarity=0.029 Sum_probs=76.9
Q ss_pred HHHhhhcCChHHHHHHHHHc-CCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCCh
Q 046221 395 ISSYSKCGNVDLAYIVFEEM-GFLR-DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNACGHAGLT 471 (572)
Q Consensus 395 ~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~ 471 (572)
...+.+.|++++|.+.+++. ...| +...|..+..+|.+.|++++|+..+++..+. .| +...+..+..+|...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence 34556677777777777776 2223 4667777777788888888888888887773 45 446777777778888888
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHH--HHhhCChhHHHHHHH
Q 046221 472 NDGLVIFNQMIEENKVKPSQEHYGCVVDL--LARAGCLSDASGLAG 515 (572)
Q Consensus 472 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 515 (572)
++|++.++++++.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88888888777654 2233344444444 777788888888777
No 183
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.06 E-value=6.7e-06 Score=80.13 Aligned_cols=119 Identities=16% Similarity=-0.009 Sum_probs=92.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhh
Q 046221 426 IIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARA 504 (572)
Q Consensus 426 l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 504 (572)
+...+.+.|++++|+..|++..+. .| +...|..+..+|.+.|++++|+..++++++.. +.+...+..+..+|.+.
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHc
Confidence 344567889999999999999984 56 46899999999999999999999999998653 45667899999999999
Q ss_pred CChhHHHHHHHhccC-CC-ChHHHHHHHHH--HhhhcCCHHHHHHHHHH
Q 046221 505 GCLSDASGLAGKLLE-GM-GPNIWRALLSG--CVLHVGRFQDAEALRSG 549 (572)
Q Consensus 505 g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~--~~~~~g~~~~A~~~~~~ 549 (572)
|++++|.+.++++.+ .| +...+..+... +... |++++|++.+++
T Consensus 88 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~-g~~~~A~~~~~~ 135 (477)
T 1wao_1 88 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ-KAFERAIAGDEH 135 (477)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHH-HHHCCC------
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH-HHHHHHhccccc
Confidence 999999999999887 44 44455555444 5555 999999998883
No 184
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.04 E-value=3.4e-05 Score=60.95 Aligned_cols=95 Identities=13% Similarity=-0.020 Sum_probs=66.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-------------HHHHHHHHHHHhccCChHHHHHHHHHhHHh----c
Q 046221 423 WNTIIYGYGVNGHGETALALYHKMTETGEVPD-------------SSTYLSILNACGHAGLTNDGLVIFNQMIEE----N 485 (572)
Q Consensus 423 ~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~-------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~ 485 (572)
+......+.+.|++++|+..|++.++ +.|+ ...|..+..++.+.|++++|+..++++++. .
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 34445556667777777777777766 3444 227777888888888888888888888764 1
Q ss_pred CCCCC-hhHH----HHHHHHHHhhCChhHHHHHHHhccC
Q 046221 486 KVKPS-QEHY----GCVVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 486 ~~~~~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
.+.|+ ...| .....++...|++++|+..|++..+
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 11344 3466 7778888888888888888888765
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.03 E-value=6.6e-06 Score=62.72 Aligned_cols=85 Identities=13% Similarity=0.061 Sum_probs=66.2
Q ss_pred hcCChHHHHHHHHHc-CC----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChHH
Q 046221 400 KCGNVDLAYIVFEEM-GF----LRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNACGHAGLTND 473 (572)
Q Consensus 400 ~~g~~~~A~~~~~~~-~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~ 473 (572)
..|++++|+..|++. .. +.+...+..+..+|...|++++|+..|++..+. .| +...+..+..++...|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHH
Confidence 357788888888887 44 234567888888999999999999999999984 45 46888889999999999999
Q ss_pred HHHHHHHhHHhcC
Q 046221 474 GLVIFNQMIEENK 486 (572)
Q Consensus 474 a~~~~~~~~~~~~ 486 (572)
|+..++++++...
T Consensus 80 A~~~~~~al~~~p 92 (117)
T 3k9i_A 80 GVELLLKIIAETS 92 (117)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCC
Confidence 9999999987653
No 186
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.02 E-value=0.0001 Score=57.05 Aligned_cols=90 Identities=14% Similarity=0.094 Sum_probs=71.8
Q ss_pred HHHHhhhcCChHHHHHHHHHc-CCCCC-H---hHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC----HHHHHHHHHH
Q 046221 394 LISSYSKCGNVDLAYIVFEEM-GFLRD-V---VSWNTIIYGYGVNGHGETALALYHKMTETGEVPD----SSTYLSILNA 464 (572)
Q Consensus 394 l~~~~~~~g~~~~A~~~~~~~-~~~~~-~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~ 464 (572)
+...+...|++++|...|++. ...|+ . ..+..+..++...|++++|...|+++.+. .|+ ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHH
Confidence 556677889999999999887 22233 2 46777888899999999999999999884 453 5667888889
Q ss_pred HhccCChHHHHHHHHHhHHhc
Q 046221 465 CGHAGLTNDGLVIFNQMIEEN 485 (572)
Q Consensus 465 ~~~~g~~~~a~~~~~~~~~~~ 485 (572)
+...|++++|...|+++++..
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHHHHHHC
Confidence 999999999999999998654
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.00 E-value=4e-05 Score=71.81 Aligned_cols=119 Identities=15% Similarity=-0.048 Sum_probs=73.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc--------------CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCC
Q 046221 423 WNTIIYGYGVNGHGETALALYHKMTET--------------GEVP-DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKV 487 (572)
Q Consensus 423 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--------------g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 487 (572)
+..+...+.+.|++++|+..|++.++. ...| +..+|..+..+|.+.|++++|+..++++++..
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-- 303 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-- 303 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC--
Confidence 444555555666666666666555541 0223 23667777777788888888888888776432
Q ss_pred CCChhHHHHHHHHHHhhCChhHHHHHHHhccC-CC-ChHHHHHHHHHHhhhcCCHHHHH
Q 046221 488 KPSQEHYGCVVDLLARAGCLSDASGLAGKLLE-GM-GPNIWRALLSGCVLHVGRFQDAE 544 (572)
Q Consensus 488 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~g~~~~A~ 544 (572)
+.+...+..+..+|.+.|++++|.+.++++.+ .| +...+..+...+... ++.+++.
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~-~~~~~a~ 361 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI-KAQKDKE 361 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-HHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-HHHHHHH
Confidence 33456777777788888888888888887766 44 334444444444333 5555543
No 188
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.92 E-value=3.2e-05 Score=71.59 Aligned_cols=94 Identities=6% Similarity=-0.059 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 046221 422 SWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDL 500 (572)
Q Consensus 422 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 500 (572)
.|..+..+|.+.|++++|+..+++.++. .| +...|..+..+|...|++++|+..|+++++.. +-+...+..+...
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--p~~~~a~~~L~~l 307 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--PDDKAIRRELRAL 307 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 7888889999999999999999999984 56 56889999999999999999999999987533 2234455555555
Q ss_pred -HHhhCChhHHHHHHHhccC
Q 046221 501 -LARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 501 -~~~~g~~~~A~~~~~~~~~ 519 (572)
....+..+++...+.++..
T Consensus 308 ~~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 308 AEQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHhhC
Confidence 3345677888888888876
No 189
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.91 E-value=6.1e-05 Score=73.03 Aligned_cols=146 Identities=9% Similarity=-0.054 Sum_probs=99.7
Q ss_pred cCChHHHHHHHHHc-CCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC----------------HHHHHHHH
Q 046221 401 CGNVDLAYIVFEEM-GFLR-DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD----------------SSTYLSIL 462 (572)
Q Consensus 401 ~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~----------------~~~~~~l~ 462 (572)
.+++++|...|+.. ...| ....|..+...|.+.|++++|+..|++.++. .|+ ...|..+.
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHH
Confidence 34444444444333 1112 3566777888888888899998888888873 343 47788888
Q ss_pred HHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC-CC-ChHHHHHHHHHHhhhcCCH
Q 046221 463 NACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE-GM-GPNIWRALLSGCVLHVGRF 540 (572)
Q Consensus 463 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~g~~ 540 (572)
.+|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|...|+++.+ .| +...+..+...+... |+.
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~-~~~ 401 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLD--SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKA-KEH 401 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHH-HHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-HHH
Confidence 88888899999999888887654 44667788888888888999999988888877 44 344555555555544 777
Q ss_pred HHHH-HHHHHHH
Q 046221 541 QDAE-ALRSGSQ 551 (572)
Q Consensus 541 ~~A~-~~~~~m~ 551 (572)
++|. ..+++|.
T Consensus 402 ~~a~~~~~~~~f 413 (457)
T 1kt0_A 402 NERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHH
Confidence 7665 3444443
No 190
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.90 E-value=7.2e-05 Score=60.77 Aligned_cols=100 Identities=8% Similarity=-0.017 Sum_probs=81.2
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHhHHhc--------C--------CCCChhHHHHHHHHHHhhCChhHHHHHHHhccC
Q 046221 456 STYLSILNACGHAGLTNDGLVIFNQMIEEN--------K--------VKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 456 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
..+......+.+.|++++|+..|+++++.. . -+.+...|..+..+|.+.|++++|+..++++..
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 456777888999999999999999998651 0 022345788899999999999999999999987
Q ss_pred --CCChHHHHHHHHHHhhhcCCHHHHHHHHHHHHhCCCC
Q 046221 520 --GMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGII 556 (572)
Q Consensus 520 --~~~~~~~~~l~~~~~~~~g~~~~A~~~~~~m~~~~~~ 556 (572)
+.+...|..+..++... |++++|...|++..+..+.
T Consensus 92 ~~p~~~~a~~~~g~~~~~~-g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 92 REETNEKALFRRAKARIAA-WKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HSTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCGG
T ss_pred cCCcchHHHHHHHHHHHHH-hcHHHHHHHHHHHHhcCCC
Confidence 44566788888877776 9999999999998876543
No 191
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.90 E-value=4.1e-05 Score=74.03 Aligned_cols=60 Identities=12% Similarity=-0.067 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc-----C-CCCCH-HHHHHHHHHHhccCChHHHHHHHHHh
Q 046221 422 SWNTIIYGYGVNGHGETALALYHKMTET-----G-EVPDS-STYLSILNACGHAGLTNDGLVIFNQM 481 (572)
Q Consensus 422 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----g-~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~ 481 (572)
+++.|...|...|++++|+.++++.++- | -.|+. .+++.|...|...|++++|+.+++++
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444455555555555555555444321 1 01222 33444444444444555544444444
No 192
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.87 E-value=0.0058 Score=55.33 Aligned_cols=228 Identities=14% Similarity=0.001 Sum_probs=138.6
Q ss_pred HhcCChh-HHHHHHhccCCCCcc---hHHHHHHHHHHcCC----------hHHHHHHHHHHHhcCCCCCCHhHHHHHHHH
Q 046221 297 SKCGDLD-SSRSVFNQITEKSLV---SWTAIISGYVQNGC----------AREALNQFIKMRQEKTDSVDSITLVSILTA 362 (572)
Q Consensus 297 ~~~~~~~-~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~ 362 (572)
.+.|.++ +|...++.+..-++. +|+.--..+...+. +++++.+++.+....+ -+..++..-...
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P--Kny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP--KSYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHH
Confidence 3445544 677777776654442 34332222222221 5677788877763332 344444444444
Q ss_pred hcccc--cHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCC-hHHHHHHHHHc--CCCCCHhHHHHHHHHHHhc----
Q 046221 363 SGELA--ALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN-VDLAYIVFEEM--GFLRDVVSWNTIIYGYGVN---- 433 (572)
Q Consensus 363 ~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~---- 433 (572)
+...+ .++.+..+++.+.+.. +-+...|+.-.-++...|. ++++++.++++ ..+-+...|+.....+.+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC
T ss_pred HhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcc
Confidence 44444 4788888888888765 5667777766666777777 58888888887 3335667777665555443
Q ss_pred ----------CChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhcc-----------CChHHHHHHHHHhHHhcCCCCCh
Q 046221 434 ----------GHGETALALYHKMTETGEVP-DSSTYLSILNACGHA-----------GLTNDGLVIFNQMIEENKVKPSQ 491 (572)
Q Consensus 434 ----------~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~ 491 (572)
+.++++++.+++.... .| |...|+.+-..+.+. +.++++++.++++++.. ||.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~---pd~ 271 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE---PEN 271 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC---TTC
T ss_pred ccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC---ccc
Confidence 3477888888888884 56 557776655555444 45788889999888643 554
Q ss_pred -hHHHHHHH---HHHhhCChhHHHHHHHhccC-CCChHH-HHHHHHH
Q 046221 492 -EHYGCVVD---LLARAGCLSDASGLAGKLLE-GMGPNI-WRALLSG 532 (572)
Q Consensus 492 -~~~~~l~~---~~~~~g~~~~A~~~~~~~~~-~~~~~~-~~~l~~~ 532 (572)
.++..++. .....|..+++...+.++.+ +|.... |.-+...
T Consensus 272 ~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 272 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 23222222 22245777888888888876 554443 4444433
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.87 E-value=0.0001 Score=58.17 Aligned_cols=93 Identities=13% Similarity=-0.010 Sum_probs=74.6
Q ss_pred HHHHHHhhhcCChHHHHHHHHHc-CCCCC-------------HhHHHHHHHHHHhcCChHHHHHHHHHHHhc-----CCC
Q 046221 392 NCLISSYSKCGNVDLAYIVFEEM-GFLRD-------------VVSWNTIIYGYGVNGHGETALALYHKMTET-----GEV 452 (572)
Q Consensus 392 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----g~~ 452 (572)
......+.+.|++++|+..|++. .+.|+ ...|..+..++.+.|++++|+..+++.++. .+.
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 34556677788888888888877 22232 238888999999999999999999999982 117
Q ss_pred CCH-HHH----HHHHHHHhccCChHHHHHHHHHhHHh
Q 046221 453 PDS-STY----LSILNACGHAGLTNDGLVIFNQMIEE 484 (572)
Q Consensus 453 p~~-~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~ 484 (572)
|+. ..| .....++...|++++|+..|+++++-
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 876 778 89999999999999999999999754
No 194
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.86 E-value=0.0003 Score=55.14 Aligned_cols=112 Identities=12% Similarity=-0.086 Sum_probs=74.3
Q ss_pred CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----hCChhH
Q 046221 434 GHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLAR----AGCLSD 509 (572)
Q Consensus 434 ~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 509 (572)
+++++|+..|++..+.| .|+.. |...|...+.+++|.++|+++.+. -+...+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 45677777777777765 33333 556666666677777777777542 355566667777766 677777
Q ss_pred HHHHHHhccCCCChHHHHHHHHHHhh----hcCCHHHHHHHHHHHHhCCC
Q 046221 510 ASGLAGKLLEGMGPNIWRALLSGCVL----HVGRFQDAEALRSGSQKKGI 555 (572)
Q Consensus 510 A~~~~~~~~~~~~~~~~~~l~~~~~~----~~g~~~~A~~~~~~m~~~~~ 555 (572)
|.++|++..+..++..+..|...+.. . ++.++|...+++..+.|.
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~-~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVV-KNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCC-cCHHHHHHHHHHHHHCCC
Confidence 77777777666666666666666654 3 677777777777776664
No 195
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.86 E-value=9.5e-05 Score=69.23 Aligned_cols=117 Identities=9% Similarity=-0.009 Sum_probs=89.1
Q ss_pred HHHHHHhhhcCChHHHHHHHHHc-C----------------CCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 046221 392 NCLISSYSKCGNVDLAYIVFEEM-G----------------FLR-DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP 453 (572)
Q Consensus 392 ~~l~~~~~~~g~~~~A~~~~~~~-~----------------~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p 453 (572)
..+...+.+.|++++|++.|++. . ..| +...|..+..+|.+.|++++|+..+++.++ +.|
T Consensus 227 ~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~--~~p 304 (370)
T 1ihg_A 227 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE--IDP 304 (370)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH--hCc
Confidence 33455566666666666666554 1 222 356788888999999999999999999998 456
Q ss_pred -CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHH
Q 046221 454 -DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASG 512 (572)
Q Consensus 454 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 512 (572)
+...|..+..+|...|++++|+..|+++++.. +.+...+..+..++.+.++.+++.+
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888999999999999999999999998654 3456677788888888887777764
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.83 E-value=3e-05 Score=58.18 Aligned_cols=94 Identities=11% Similarity=0.002 Sum_probs=63.5
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC-------
Q 046221 419 DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPS------- 490 (572)
Q Consensus 419 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------- 490 (572)
+...|..+...+...|++++|+..|++..+. .| +...+..+..++...|++++|+..++++++. .|+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~ 77 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY---TSTAEHVAIR 77 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CSSTTSHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCccHHHHH
Confidence 4456666777777788888888888877774 44 4567777777777888888888888777642 344
Q ss_pred hhHHHHHHHHHHhhCChhHHHHHHHhc
Q 046221 491 QEHYGCVVDLLARAGCLSDASGLAGKL 517 (572)
Q Consensus 491 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 517 (572)
...+..+..++...|+.+.|.+.++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 78 SKLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 345556666666666666666555544
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.76 E-value=2.1e-05 Score=59.11 Aligned_cols=92 Identities=14% Similarity=0.047 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC-CCCh-------HH
Q 046221 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE-GMGP-------NI 525 (572)
Q Consensus 454 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~-------~~ 525 (572)
+...+..+...+...|++++|+..|+++++.. +.+...+..+..++.+.|++++|.+.++++.. .|+. ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 45677888899999999999999999998654 45677899999999999999999999999887 5553 33
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHH
Q 046221 526 WRALLSGCVLHVGRFQDAEALRS 548 (572)
Q Consensus 526 ~~~l~~~~~~~~g~~~~A~~~~~ 548 (572)
+..+...+... |+.++|+..++
T Consensus 81 ~~~~~~~~~~~-~~~~~a~~~~~ 102 (111)
T 2l6j_A 81 QYRLELAQGAV-GSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHH-HCCCCCSSSSS
T ss_pred HHHHHHHHHHH-HhHhhhHhHHH
Confidence 44444444333 55555544333
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.73 E-value=9.3e-05 Score=71.55 Aligned_cols=123 Identities=10% Similarity=-0.021 Sum_probs=73.0
Q ss_pred hcCChHHHHHHHHHHHhcC---C---CCCH-HHHHHHHHHHhccCChHHHHHHHHHhHHhc----C-CCCCh-hHHHHHH
Q 046221 432 VNGHGETALALYHKMTETG---E---VPDS-STYLSILNACGHAGLTNDGLVIFNQMIEEN----K-VKPSQ-EHYGCVV 498 (572)
Q Consensus 432 ~~~~~~~A~~~~~~~~~~g---~---~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~-~~~~~-~~~~~l~ 498 (572)
..|++++|+.++++.++.. + .|+. .+++.|..+|...|++++|+.+++++++-. | -.|+. .+++.|.
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4566666666665554321 1 2233 567777777888888888887777765321 1 11222 2677777
Q ss_pred HHHHhhCChhHHHHHHHhccC------CCChH-H--HHHHHHHHhhhcCCHHHHHHHHHHHHhCC
Q 046221 499 DLLARAGCLSDASGLAGKLLE------GMGPN-I--WRALLSGCVLHVGRFQDAEALRSGSQKKG 554 (572)
Q Consensus 499 ~~~~~~g~~~~A~~~~~~~~~------~~~~~-~--~~~l~~~~~~~~g~~~~A~~~~~~m~~~~ 554 (572)
..|...|++++|+.+++++.. .|+.. + ...++..+....+++++|..++.+++++.
T Consensus 401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 401 LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888887777654 33322 1 22233333333477788888888777654
No 199
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.73 E-value=0.00082 Score=66.68 Aligned_cols=166 Identities=13% Similarity=0.080 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCC----------hHHHHHHHHHc--CCCCCHhHHHHHHHHHHhcC--C
Q 046221 370 EICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGN----------VDLAYIVFEEM--GFLRDVVSWNTIIYGYGVNG--H 435 (572)
Q Consensus 370 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~--~ 435 (572)
++|.+.++.+.... +-+...|+.--.++.+.|+ ++++++.++.+ ..+.+..+|..-...+.+.+ +
T Consensus 46 eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccccc
Confidence 44455555555543 3344455554455555555 78888888888 44456778888777788888 6
Q ss_pred hHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccC-ChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhh---------
Q 046221 436 GETALALYHKMTETGEVP-DSSTYLSILNACGHAG-LTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARA--------- 504 (572)
Q Consensus 436 ~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 504 (572)
+++++..++++.+. .| +...|+.-...+.+.| .++++++.++++++.+ +-+...|+....++.+.
T Consensus 125 ~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~--p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 125 WARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT--CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred HHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC--CCCccHHHHHHHHHHhhccccccccc
Confidence 69999999999984 45 6688888777778888 8899999999888654 45666777777766653
Q ss_pred -----CChhHHHHHHHhccC--CCChHHHHHHHHHHhhhcCCHH
Q 046221 505 -----GCLSDASGLAGKLLE--GMGPNIWRALLSGCVLHVGRFQ 541 (572)
Q Consensus 505 -----g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~g~~~ 541 (572)
+.+++|.+.++++.. +.+...|..+...+... ++.+
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~-~~~~ 243 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRA-EPHD 243 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCC-CCCS
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcC-CCcc
Confidence 557889999988876 55667788777666544 5533
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.68 E-value=0.00028 Score=53.25 Aligned_cols=78 Identities=8% Similarity=-0.029 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHh
Q 046221 438 TALALYHKMTETGEVP-DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGK 516 (572)
Q Consensus 438 ~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 516 (572)
.|+..|++..+. .| +...+..+...+...|++++|+..|+++++.. +.+...+..+..+|...|++++|...+++
T Consensus 3 ~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--PTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 466677777663 44 45677777777888888888888888777543 34455777777888888888888888877
Q ss_pred ccC
Q 046221 517 LLE 519 (572)
Q Consensus 517 ~~~ 519 (572)
+..
T Consensus 79 al~ 81 (115)
T 2kat_A 79 GLA 81 (115)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 201
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.65 E-value=0.00016 Score=52.92 Aligned_cols=62 Identities=24% Similarity=0.290 Sum_probs=35.4
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhHH
Q 046221 420 VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD-SSTYLSILNACGHAGLTNDGLVIFNQMIE 483 (572)
Q Consensus 420 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 483 (572)
...+..+...|...|++++|+..|++..+. .|+ ...|..+..+|...|++++|+..|+++++
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445555555666666666666666666553 332 34555556666666666666666665553
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.63 E-value=0.0001 Score=58.08 Aligned_cols=112 Identities=11% Similarity=0.037 Sum_probs=76.3
Q ss_pred hcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCC----------hHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 046221 432 VNGHGETALALYHKMTETGEVP-DSSTYLSILNACGHAGL----------TNDGLVIFNQMIEENKVKPSQEHYGCVVDL 500 (572)
Q Consensus 432 ~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 500 (572)
+.+.+++|...+++..+. .| +...|..+..++...++ +++|+..|+++++.. +-+...|..+..+
T Consensus 14 r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld--P~~~~A~~~LG~a 89 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC--cCcHHHHHHHHHH
Confidence 344567777777777773 45 55777777777776665 458888888887644 3345678888888
Q ss_pred HHhhC-----------ChhHHHHHHHhccC-CCChHHHHHHHHHHhhhcCCHHHHHHHHHHHHhCC
Q 046221 501 LARAG-----------CLSDASGLAGKLLE-GMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKG 554 (572)
Q Consensus 501 ~~~~g-----------~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~g~~~~A~~~~~~m~~~~ 554 (572)
|...| ++++|.+.|+++.+ +|+...|...+... +.|-++.-.....+
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~-------~ka~el~~~~~~~~ 148 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAPQLHAEAYKQG 148 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHHHHHHHHHHSS
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH-------HhCHhccCcccccc
Confidence 88764 89999999999888 77777665554433 34555555554443
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.59 E-value=0.00026 Score=53.45 Aligned_cols=78 Identities=12% Similarity=0.005 Sum_probs=60.8
Q ss_pred HHHHHHHHc-CCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhH
Q 046221 406 LAYIVFEEM-GFLR-DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNACGHAGLTNDGLVIFNQMI 482 (572)
Q Consensus 406 ~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 482 (572)
+|+..+++. ...| +...+..+...|...|++++|+..|++..+. .| +...|..+..++...|++++|...|++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455666665 3333 5677888888899999999999999998884 45 45788888889999999999999999887
Q ss_pred Hhc
Q 046221 483 EEN 485 (572)
Q Consensus 483 ~~~ 485 (572)
+..
T Consensus 81 ~~~ 83 (115)
T 2kat_A 81 AAA 83 (115)
T ss_dssp HHH
T ss_pred Hhc
Confidence 543
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.58 E-value=0.0009 Score=47.60 Aligned_cols=79 Identities=16% Similarity=0.280 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 046221 421 VSWNTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVD 499 (572)
Q Consensus 421 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 499 (572)
..+..+...+...|++++|+..+++..+. .| +...+..+..++...|++++|...++++++.. +.+...+..+..
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~~ 85 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCHHHHHHHHH
Confidence 34445555555666666666666665553 23 34555555556666666666666666655432 223344444444
Q ss_pred HHHh
Q 046221 500 LLAR 503 (572)
Q Consensus 500 ~~~~ 503 (572)
++.+
T Consensus 86 ~~~~ 89 (91)
T 1na3_A 86 AKQK 89 (91)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4433
No 205
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.45 E-value=0.00072 Score=49.38 Aligned_cols=64 Identities=17% Similarity=0.177 Sum_probs=56.5
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC
Q 046221 454 DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 454 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
+...+..+..+|...|++++|+..|+++++.. +.+...|..+..+|.+.|++++|.+.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56788899999999999999999999998765 44566899999999999999999999998764
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.44 E-value=0.00096 Score=47.45 Aligned_cols=78 Identities=14% Similarity=0.138 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC-CC-ChHHHHHHHHH
Q 046221 455 SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE-GM-GPNIWRALLSG 532 (572)
Q Consensus 455 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~ 532 (572)
...+..+...+...|++++|+..++++++.. +.+...+..+..++.+.|++++|...+++... .| ++..+..+...
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 4677888889999999999999999998654 44667888999999999999999999999877 44 45555555544
Q ss_pred Hh
Q 046221 533 CV 534 (572)
Q Consensus 533 ~~ 534 (572)
+.
T Consensus 87 ~~ 88 (91)
T 1na3_A 87 KQ 88 (91)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 207
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.44 E-value=0.0028 Score=49.52 Aligned_cols=108 Identities=13% Similarity=-0.024 Sum_probs=55.6
Q ss_pred ccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHcCCCCCHhHHHHHHHHHHh----cCChHHHHHH
Q 046221 367 AALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGV----NGHGETALAL 442 (572)
Q Consensus 367 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~ 442 (572)
++.++|..++++..+.|. +... +...|...+.+++|.+.|++.-..-+...+..|...|.. .+++++|..+
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 345555555555555541 1111 444455555555565555555111344455555555554 5556666666
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHhH
Q 046221 443 YHKMTETGEVPDSSTYLSILNACGH----AGLTNDGLVIFNQMI 482 (572)
Q Consensus 443 ~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~ 482 (572)
|++..+.| +...+..|...|.. .+++++|.++|+++.
T Consensus 84 ~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa 124 (138)
T 1klx_A 84 YSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC 124 (138)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH
Confidence 66665543 34444455555544 555666666666554
No 208
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.43 E-value=0.0079 Score=59.65 Aligned_cols=151 Identities=9% Similarity=-0.037 Sum_probs=118.2
Q ss_pred cCChHHHHHHHHHc-CCCC-CHhHHHHHHHHHHhcCC----------hHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhc
Q 046221 401 CGNVDLAYIVFEEM-GFLR-DVVSWNTIIYGYGVNGH----------GETALALYHKMTETGEVP-DSSTYLSILNACGH 467 (572)
Q Consensus 401 ~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~ 467 (572)
....++|++.++++ ...| +...|+.--.++...|+ +++++..++++.+. .| +..+|..-...+.+
T Consensus 42 ~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 42 GELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSR 119 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 34457889999988 4445 45667776666666666 89999999999984 56 56889888888889
Q ss_pred cC--ChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhC-ChhHHHHHHHhccC--CCChHHHHHHHHHHhhh------
Q 046221 468 AG--LTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAG-CLSDASGLAGKLLE--GMGPNIWRALLSGCVLH------ 536 (572)
Q Consensus 468 ~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~------ 536 (572)
.| +++++++.++++++.. +-+...|+.-..++.+.| .++++.+.++++.+ +.+.+.|+.....+...
T Consensus 120 l~~~~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 120 LPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred cccccHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 99 6799999999999765 557778888888888889 89999999999988 55677788776665431
Q ss_pred -------cCCHHHHHHHHHHHHhCCC
Q 046221 537 -------VGRFQDAEALRSGSQKKGI 555 (572)
Q Consensus 537 -------~g~~~~A~~~~~~m~~~~~ 555 (572)
.++++++++.+++..+..+
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P 223 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDP 223 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCS
T ss_pred cccccccHHHHHHHHHHHHHHHhhCC
Confidence 1567999999988876554
No 209
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.32 E-value=0.00028 Score=55.57 Aligned_cols=95 Identities=14% Similarity=0.003 Sum_probs=61.9
Q ss_pred hcCChHHHHHHHHHc-C-CCCCHhHHHHHHHHHHhcCC----------hHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHh
Q 046221 400 KCGNVDLAYIVFEEM-G-FLRDVVSWNTIIYGYGVNGH----------GETALALYHKMTETGEVPD-SSTYLSILNACG 466 (572)
Q Consensus 400 ~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~ 466 (572)
+.+.+++|.+.++.. . .+.+...|..+..++...++ +++|+..|++.++ +.|+ ..+|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHH
Confidence 344556666666655 2 22345556656556555544 4588888888888 5674 477888888887
Q ss_pred ccC-----------ChHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 046221 467 HAG-----------LTNDGLVIFNQMIEENKVKPSQEHYGCVVD 499 (572)
Q Consensus 467 ~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 499 (572)
..| ++++|++.|+++++. .|+...|...+.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l---~P~~~~y~~al~ 132 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDE---QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence 664 788999999988863 577655544443
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.25 E-value=0.013 Score=53.37 Aligned_cols=143 Identities=11% Similarity=-0.027 Sum_probs=77.8
Q ss_pred cCCCchhHHHHHHHHhhh--c---CChHHHHHHHHHc-CCCCC-HhHHHHHHHHHHh----cCCh-HHHH---HHHHHHH
Q 046221 383 GFPRYRSVQNCLISSYSK--C---GNVDLAYIVFEEM-GFLRD-VVSWNTIIYGYGV----NGHG-ETAL---ALYHKMT 447 (572)
Q Consensus 383 ~~~~~~~~~~~l~~~~~~--~---g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~----~~~~-~~A~---~~~~~~~ 447 (572)
+.+.+...|...+++... . ....+|..+|++. ...|+ ...|..+..+|.. .+.. .... ..+....
T Consensus 189 ~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 189 ILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp HSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 345566666666655432 2 2346677777776 34454 3444444333321 1111 1111 1111111
Q ss_pred hcC-CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC-CCChHH
Q 046221 448 ETG-EVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE-GMGPNI 525 (572)
Q Consensus 448 ~~g-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~ 525 (572)
... ...+..+|..+...+...|++++|...++++++.+ |+...|..+...+.-.|++++|.+.++++.. .|...+
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln---~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE---MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 111 13355666666666666677777777777776543 5666666667777777777777777777666 666666
Q ss_pred HHH
Q 046221 526 WRA 528 (572)
Q Consensus 526 ~~~ 528 (572)
|..
T Consensus 346 ~~~ 348 (372)
T 3ly7_A 346 LYW 348 (372)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 211
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.16 E-value=0.00042 Score=64.29 Aligned_cols=416 Identities=11% Similarity=0.056 Sum_probs=243.7
Q ss_pred CCCcchhhHHHHHhhcCChhhHHHHhccCCC--CChhhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHH
Q 046221 3 IDPYNSSKLLSNYFKSGKIKEAENLFDEIPE--KNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVA 80 (572)
Q Consensus 3 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 80 (572)
-|+..|..++.+..+.|.+++-++.+.-..+ .++..=+.++-+|++.++..+-.+++ -.|+..-...+..-
T Consensus 81 ~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGDr 153 (624)
T 3lvg_A 81 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGDR 153 (624)
T ss_dssp SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHH
Confidence 3788899999999999999999999987665 56777789999999999876543332 24677777777888
Q ss_pred HcCCCChHHHHHHHHHHHHhcCCCCc------c----cCC-CCCCceeHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCC
Q 046221 81 AAGLQNLELARSIHGLMVKFGLESDL------F----EGL-KNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPN 149 (572)
Q Consensus 81 ~~~~g~~~~a~~~~~~~~~~~~~~~~------~----~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 149 (572)
|...|.++.|+-+|..+....--... | +.. +..++.+|-.+-.+|...+.+.-|.-+--.+.-. |
T Consensus 154 cf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---a- 229 (624)
T 3lvg_A 154 CYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---A- 229 (624)
T ss_dssp HHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---S-
T ss_pred HHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---H-
Confidence 88888888777776544322111110 1 111 2366788999999999999888776654444421 1
Q ss_pred HhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHHHHHHhCCCHHHHHHHHhhcCC-----------CCccc
Q 046221 150 AVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMEC-----------KDVIS 218 (572)
Q Consensus 150 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----------~~~~~ 218 (572)
.....++..|-..|.+++...+++.-+.. -......|+-|.-.|++- +.++..+.++..-. .....
T Consensus 230 -deL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahL 306 (624)
T 3lvg_A 230 -DELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHL 306 (624)
T ss_dssp -SCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTC
T ss_pred -HHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 22234556678888888888888776521 145667888888888876 45555555554433 24567
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCccchHHHHHHhcccCChHHHHHHHHHHHHhCCCCCcchHHHHH-----
Q 046221 219 WTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSII----- 293 (572)
Q Consensus 219 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----- 293 (572)
|.-++-.|.+...++.|...+ .+. +|+..--...-....+..+.+---+.+.-. +.-.+...+-|+
T Consensus 307 W~ElvfLY~~ydE~DnA~ltM---i~h--~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FY----L~e~P~lL~DLL~vL~p 377 (624)
T 3lvg_A 307 WAELVFLYDKYEEYDNAIITM---MNH--PTDAWKEGQFKDIITKVANVELYYRAIQFY----LEFKPLLLNDLLMVLSP 377 (624)
T ss_dssp HHHHHHHHHHHTCHHHHHHTT---TSC--HHHHCCGGGGTTTGGGCSCSHHHHHHHHHH----TTSCCTTSHHHHHHHCT
T ss_pred HHHHHHHHhcchhHHHHHHHH---HhC--ChhhccHHHHHHHHHHcchHHHHHHHHHHH----HHhChHHHHHHHHhccc
Confidence 888888888888888765432 111 111111111111222222222211111111 122222233333
Q ss_pred --------HHHHhcCChhHHHHHHhccCCCCcchHH-HHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhc
Q 046221 294 --------AMYSKCGDLDSSRSVFNQITEKSLVSWT-AIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASG 364 (572)
Q Consensus 294 --------~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 364 (572)
+.+.+.|++.-...++......|...-| ++-..|....+++.-.. -. ..-..-|....
T Consensus 378 rlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~----SI-d~ydNFD~i~L-------- 444 (624)
T 3lvg_A 378 RLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRT----SI-DAYDNFDNISL-------- 444 (624)
T ss_dssp TCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHH----TT-SSCCCSCTTHH--------
T ss_pred cCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHH----HH-HHhccccHHHH--------
Confidence 4444555555555555555555554433 44456666666543221 11 11122222222
Q ss_pred ccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHH
Q 046221 365 ELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYH 444 (572)
Q Consensus 365 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 444 (572)
|.++ .+ .+-...-..-...|.+.++++++..+.++=+. |.-.|.....+|+.+-|.++++
T Consensus 445 -------A~rL----Ek---HeL~eFRrIAA~LYkkn~rw~qsi~l~KkDkl------ykDAietAa~S~~~elaeeLL~ 504 (624)
T 3lvg_A 445 -------AQRL----EK---HELIEFRRIAAYLFKGNNRWKQSVELCKKDSL------YKDAMQYASESKDTELAEELLQ 504 (624)
T ss_dssp -------HHHH----HT---CSSHHHHHHHHHHHHTTCHHHHHSSCSSTTCC------TTGGGTTTTTCCCTTHHHHHHH
T ss_pred -------HHHH----hh---CchHHHHHHHHHHHHhcccHHHHHHHHHhccc------HHHHHHHHHHcCCHHHHHHHHH
Confidence 2211 11 11122223334557778888888776654433 2223344566888889999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 046221 445 KMTETGEVPDSSTYLSILNACGHAGLTNDGLVI 477 (572)
Q Consensus 445 ~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~ 477 (572)
-..+.| +...|...+-.|...=++|-++++
T Consensus 505 yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 505 WFLQEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp HHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 888865 456677888888888888887765
No 212
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.03 E-value=0.015 Score=61.19 Aligned_cols=102 Identities=12% Similarity=0.060 Sum_probs=56.7
Q ss_pred hhhcCChHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 046221 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVI 477 (572)
Q Consensus 398 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~ 477 (572)
....|++++|.++.+.+ .+...|..+...+.+.++++.|++.|.++.+ |..+...+...|+.+...++
T Consensus 662 ~l~~~~~~~A~~~~~~~---~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE---SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp HHHHTCHHHHHHHHTTC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhh---CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence 44567777777766554 4456777777777777777777777776654 22333344445555554444
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhcc
Q 046221 478 FNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518 (572)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 518 (572)
-+.+. ..| -++.-..+|.+.|++++|.+++.++.
T Consensus 730 ~~~a~-~~~------~~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 730 AKDAE-TTG------KFNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHH-HTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHH-HcC------chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 44442 221 12333344555566666665555544
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.00 E-value=0.009 Score=54.38 Aligned_cols=141 Identities=8% Similarity=0.012 Sum_probs=89.3
Q ss_pred CCCCHhHHHHHHHHhcc-----cccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhh---cC-C-------hHHHHHHHH
Q 046221 349 DSVDSITLVSILTASGE-----LAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSK---CG-N-------VDLAYIVFE 412 (572)
Q Consensus 349 ~~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g-~-------~~~A~~~~~ 412 (572)
.+.+...|...+.+... ..+..+|..+|++..+.. |-....+..+.-+|.- .+ . ...+.+...
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 45566667776665432 235677888888888764 3333444433333321 11 1 111222111
Q ss_pred Hc-CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCh
Q 046221 413 EM-GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQ 491 (572)
Q Consensus 413 ~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 491 (572)
.+ ..+.+...|..+...+...|++++|...++++... .|+...|..+...+.-.|++++|.+.++++++. .|..
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL---~P~~ 343 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL---RPGA 343 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCSH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCc
Confidence 22 33456777877777777778999999999988885 478777877888888889999999988888754 4666
Q ss_pred hHHH
Q 046221 492 EHYG 495 (572)
Q Consensus 492 ~~~~ 495 (572)
.+|.
T Consensus 344 ~t~~ 347 (372)
T 3ly7_A 344 NTLY 347 (372)
T ss_dssp HHHH
T ss_pred ChHH
Confidence 6653
No 214
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.91 E-value=0.011 Score=46.01 Aligned_cols=92 Identities=12% Similarity=0.011 Sum_probs=70.1
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccC---ChHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhhCChhHH
Q 046221 436 GETALALYHKMTETGEVPDSSTYLSILNACGHAG---LTNDGLVIFNQMIEENKVKP--SQEHYGCVVDLLARAGCLSDA 510 (572)
Q Consensus 436 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A 510 (572)
...+.+-|.+..+.| .++..+...+..++++++ +.++++.+|++.++.. .| ....+..|.-++.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CccchHHHHHHHHHHHHHccCHHHH
Confidence 455667777777665 378888888888999988 6669999999998654 34 355777788888999999999
Q ss_pred HHHHHhccC-CCChHHHHHHH
Q 046221 511 SGLAGKLLE-GMGPNIWRALL 530 (572)
Q Consensus 511 ~~~~~~~~~-~~~~~~~~~l~ 530 (572)
.+.++.+.+ .|+...-..|.
T Consensus 91 ~~y~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHH
Confidence 999999988 77655444443
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.84 E-value=0.0051 Score=58.38 Aligned_cols=87 Identities=8% Similarity=-0.088 Sum_probs=60.3
Q ss_pred hcCChHHHHHHHHHHHhc---CCCC---CH-HHHHHHHHHHhccCChHHHHHHHHHhHHhc----C-CCCCh-hHHHHHH
Q 046221 432 VNGHGETALALYHKMTET---GEVP---DS-STYLSILNACGHAGLTNDGLVIFNQMIEEN----K-VKPSQ-EHYGCVV 498 (572)
Q Consensus 432 ~~~~~~~A~~~~~~~~~~---g~~p---~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~-~~~~~-~~~~~l~ 498 (572)
..|++++|+.++++.++. -+-| +. .+++.|..+|...|++++|+.+++++++-. | -.|+. .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457788888888876652 1223 22 667788888888888888888888776421 1 12332 2677888
Q ss_pred HHHHhhCChhHHHHHHHhcc
Q 046221 499 DLLARAGCLSDASGLAGKLL 518 (572)
Q Consensus 499 ~~~~~~g~~~~A~~~~~~~~ 518 (572)
..|..+|++++|+.+++++.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHH
Confidence 88888888888888888765
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.83 E-value=0.0014 Score=47.55 Aligned_cols=56 Identities=25% Similarity=0.226 Sum_probs=33.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCC-CHH-HHHHHHHHHhccCChHHHHHHHHHhHHh
Q 046221 427 IYGYGVNGHGETALALYHKMTETGEVP-DSS-TYLSILNACGHAGLTNDGLVIFNQMIEE 484 (572)
Q Consensus 427 ~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 484 (572)
...+...|++++|+..|++..+. .| +.. .+..+..++...|++++|+..|+++++.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34455566666666666666653 34 334 5666666666666666666666666543
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.75 E-value=0.0085 Score=56.96 Aligned_cols=92 Identities=15% Similarity=0.104 Sum_probs=54.9
Q ss_pred HHHHhcCChHHHHHHHHHHHhcC---CCCC----HHHHHHHHHHHhccCChHHHHHHHHHhHHhc-----CCCCCh-hHH
Q 046221 428 YGYGVNGHGETALALYHKMTETG---EVPD----SSTYLSILNACGHAGLTNDGLVIFNQMIEEN-----KVKPSQ-EHY 494 (572)
Q Consensus 428 ~~~~~~~~~~~A~~~~~~~~~~g---~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~-~~~ 494 (572)
..+.+.|++++|+.++++.++.. +.|+ ..+++.|..+|...|++++|+.+++++++-. .-.|+. .++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 33445666777777776665421 1222 2456667777777777777777777665321 111222 256
Q ss_pred HHHHHHHHhhCChhHHHHHHHhccC
Q 046221 495 GCVVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 495 ~~l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
+.|...|...|++++|+.+++++.+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 6777777777777777777776654
No 218
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.70 E-value=0.01 Score=42.19 Aligned_cols=68 Identities=7% Similarity=-0.059 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHHHhccCC---hHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC-CCC
Q 046221 453 PDSSTYLSILNACGHAGL---TNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE-GMG 522 (572)
Q Consensus 453 p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~ 522 (572)
+|...+..+..++...++ .++|..+++++++.. +-+......+...+.+.|++++|...|+++.+ .|.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d--p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE--PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 456677777777654444 688888888887654 44555777777888888888888888888877 454
No 219
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.69 E-value=0.0039 Score=59.17 Aligned_cols=84 Identities=11% Similarity=-0.109 Sum_probs=65.9
Q ss_pred hcCChHHHHHHHHHc---------CCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhc-----C-CCCCH-HHHHHHH
Q 046221 400 KCGNVDLAYIVFEEM---------GFLRD-VVSWNTIIYGYGVNGHGETALALYHKMTET-----G-EVPDS-STYLSIL 462 (572)
Q Consensus 400 ~~g~~~~A~~~~~~~---------~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----g-~~p~~-~~~~~l~ 462 (572)
..|++++|+.++++. ...|+ ..+++.|..+|...|++++|+.++++.++- | -.|+. .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457888888888766 12233 467889999999999999999999887652 2 23444 6789999
Q ss_pred HHHhccCChHHHHHHHHHhHH
Q 046221 463 NACGHAGLTNDGLVIFNQMIE 483 (572)
Q Consensus 463 ~~~~~~g~~~~a~~~~~~~~~ 483 (572)
..|...|++++|+.+++++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998864
No 220
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.56 E-value=0.021 Score=40.60 Aligned_cols=67 Identities=7% Similarity=-0.057 Sum_probs=51.7
Q ss_pred CCCHhHHHHHHHHHHhcCC---hHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhHHhc
Q 046221 417 LRDVVSWNTIIYGYGVNGH---GETALALYHKMTETGEVPD-SSTYLSILNACGHAGLTNDGLVIFNQMIEEN 485 (572)
Q Consensus 417 ~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 485 (572)
+.+...+..+..++...++ .++|..++++.++ +.|+ ......+...+...|++++|+..|+++++..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3566677777777654444 6899999999988 4674 4778888888899999999999999987544
No 221
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.55 E-value=0.2 Score=40.04 Aligned_cols=130 Identities=14% Similarity=0.089 Sum_probs=89.5
Q ss_pred HHHhhhcCChHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHH
Q 046221 395 ISSYSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDG 474 (572)
Q Consensus 395 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a 474 (572)
.......|+++.|.++.+++ .+...|..|.......|+++-|++.|.+..+ +..+.-.|...|+.+..
T Consensus 12 F~LAL~lg~l~~A~e~a~~l---~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL---NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh---CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34456788899998888877 4577899999999999999999999987765 33455556667777776
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccCCCChHHHHHHHHHHhhhcCCHHHHHHHHHHH
Q 046221 475 LVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGS 550 (572)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~A~~~~~~m 550 (572)
.++-+.+. ..| -++.-..++.-.|+++++.+++.+...-|.. ......+ |-.+.|.++.+++
T Consensus 80 ~kla~iA~-~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA------~~~A~t~-g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 80 SKMQNIAQ-TRE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLA------YAVAKAN-GDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHH-HTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHH------HHHHHHT-TCHHHHHHHHHHT
T ss_pred HHHHHHHH-HCc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHH------HHHHHHc-CcHHHHHHHHHHh
Confidence 66665553 222 2445556677889999999998887532211 1111123 7888888888776
No 222
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.51 E-value=0.0067 Score=57.69 Aligned_cols=89 Identities=10% Similarity=0.035 Sum_probs=69.6
Q ss_pred HHHhhhcCChHHHHHHHHHc------CCCC----CHhHHHHHHHHHHhcCChHHHHHHHHHHHhc-----C-CCCCH-HH
Q 046221 395 ISSYSKCGNVDLAYIVFEEM------GFLR----DVVSWNTIIYGYGVNGHGETALALYHKMTET-----G-EVPDS-ST 457 (572)
Q Consensus 395 ~~~~~~~g~~~~A~~~~~~~------~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----g-~~p~~-~~ 457 (572)
+..+.+.|++++|+.++++. -..| ...+++.+...|...|++++|+.++++.++- | -.|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44566788999999999877 1112 2467888999999999999999999987652 2 23444 67
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhHH
Q 046221 458 YLSILNACGHAGLTNDGLVIFNQMIE 483 (572)
Q Consensus 458 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 483 (572)
++.|...|...|++++|+.+++++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88999999999999999999998764
No 223
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.42 E-value=0.03 Score=40.24 Aligned_cols=52 Identities=19% Similarity=0.190 Sum_probs=23.3
Q ss_pred HhhhcCChHHHHHHHHHc-CCCC-CHh-HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 046221 397 SYSKCGNVDLAYIVFEEM-GFLR-DVV-SWNTIIYGYGVNGHGETALALYHKMTE 448 (572)
Q Consensus 397 ~~~~~g~~~~A~~~~~~~-~~~~-~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~ 448 (572)
.+.+.|++++|...+++. ...| +.. .|..+..+|...|++++|+..|++..+
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344444555555544444 1112 233 444444444444555555555544444
No 224
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.41 E-value=0.22 Score=52.15 Aligned_cols=155 Identities=10% Similarity=0.057 Sum_probs=104.9
Q ss_pred HHHHhCCChHHHHH-HHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHHHHHHhCCCH
Q 046221 123 AGFINNKLFQQAVL-LFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDL 201 (572)
Q Consensus 123 ~~~~~~~~~~~a~~-~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (572)
......+++++|.+ ++..+ |+......++..+.+.|..+.|.++.+.-. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCH
Confidence 44456788888877 55221 112233677777888888888877653211 113345667999
Q ss_pred HHHHHHHhhcCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCccchHHHHHHhcccCChHHHHHHHHHHHHhC
Q 046221 202 DAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGG 281 (572)
Q Consensus 202 ~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 281 (572)
+.|.++.+.+ .+...|..+...+.+.++++.|.+.|..+.+ |..+...+...|+.+...++-+.....|
T Consensus 669 ~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~ 737 (814)
T 3mkq_A 669 TLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG 737 (814)
T ss_dssp HHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 9999998877 4567899999999999999999999998754 4455555566777777666655555544
Q ss_pred CCCCcchHHHHHHHHHhcCChhHHHHHHhcc
Q 046221 282 LQSELRLSNSIIAMYSKCGDLDSSRSVFNQI 312 (572)
Q Consensus 282 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 312 (572)
-++....+|.+.|++++|.+++.++
T Consensus 738 ------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 738 ------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp ------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred ------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 2244445566677777777766554
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.31 E-value=0.03 Score=40.84 Aligned_cols=68 Identities=13% Similarity=0.021 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHhHHhcC-----CCCChhHHHHHHHHHHhhCChhHHHHHHHhccC-CCCh
Q 046221 456 STYLSILNACGHAGLTNDGLVIFNQMIEENK-----VKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE-GMGP 523 (572)
Q Consensus 456 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~ 523 (572)
.-+..+...+.+.|++..|...|+.+++... -.+...++..|..++.+.|++++|...++++.. .|+.
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~ 79 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH 79 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 3344555666666666666666666654321 123344666666777777777777777776665 4443
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.13 E-value=0.033 Score=48.54 Aligned_cols=79 Identities=11% Similarity=0.119 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHhcc-----CChHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhh-
Q 046221 436 GETALALYHKMTETGEVPD---SSTYLSILNACGHA-----GLTNDGLVIFNQMIEENKVKP--SQEHYGCVVDLLARA- 504 (572)
Q Consensus 436 ~~~A~~~~~~~~~~g~~p~---~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~- 504 (572)
...|...+++.++ +.|+ ...|..+...|... |+.++|.+.|+++++-+ | +..++..+.+.+++.
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln---P~~~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC---SAHDPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC---CTTCSHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC---CCCCchHHHHHHHHHHHhc
Confidence 4677788888888 6787 36788888888884 99999999999998654 4 366777788888884
Q ss_pred CChhHHHHHHHhccC
Q 046221 505 GCLSDASGLAGKLLE 519 (572)
Q Consensus 505 g~~~~A~~~~~~~~~ 519 (572)
|+.++|.+.+++...
T Consensus 254 gd~~~a~~~L~kAL~ 268 (301)
T 3u64_A 254 NNRAGFDEALDRALA 268 (301)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHc
Confidence 999999999999877
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.01 E-value=0.45 Score=38.06 Aligned_cols=127 Identities=16% Similarity=0.118 Sum_probs=76.3
Q ss_pred HHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCccchHHHHHHhcccCChHHHHHHH
Q 046221 195 YSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLH 274 (572)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 274 (572)
....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|....+ +..+.-.|...|+.+...++-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 44556777777766655 3556677777777777777777777776543 344445555566666666555
Q ss_pred HHHHHhCCCCCcchHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHHHHcCChHHHHHHHHHH
Q 046221 275 AQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKM 343 (572)
Q Consensus 275 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 343 (572)
+.....| -++.....+.-.|+++++.++|.+... |.--.......|..+.|.++.+++
T Consensus 84 ~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r-----~~eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 84 NIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS-----LPLAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC-----HHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC-----hHHHHHHHHHcCcHHHHHHHHHHh
Confidence 5544444 234445556667888888888876543 111111222355666777776665
No 228
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.77 E-value=2.2 Score=44.21 Aligned_cols=262 Identities=13% Similarity=0.030 Sum_probs=133.5
Q ss_pred hcccCChHHHHHHHHHHHHhCCCCCc--chHHHHHHHHHhcCChhHHHHHHhccCC-CC--------c--chHHHHHHHH
Q 046221 261 NAILGDLKRGKQLHAQVVLGGLQSEL--RLSNSIIAMYSKCGDLDSSRSVFNQITE-KS--------L--VSWTAIISGY 327 (572)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~--------~--~~~~~l~~~~ 327 (572)
....|+.+++..++......+-..+. ..-..+.-+....|..+++..++..... ++ . ..-..+.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 44567777776666554431101122 2223333445555655566665554332 22 1 1112222233
Q ss_pred HHcCC-hHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHH--HHhhhcCCh
Q 046221 328 VQNGC-AREALNQFIKMRQEKTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLI--SSYSKCGNV 404 (572)
Q Consensus 328 ~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~ 404 (572)
+-.|. -+++.+.+..+............-.++...+...|+.+....++..+.+.. +..+...+. -++.-.|+.
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCG
T ss_pred HhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCCh
Confidence 33332 245566666655222110001111223333456677777777777766532 223333333 334467888
Q ss_pred HHHHHHHHHcCCCCCH-hHHH---HHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 046221 405 DLAYIVFEEMGFLRDV-VSWN---TIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQ 480 (572)
Q Consensus 405 ~~A~~~~~~~~~~~~~-~~~~---~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 480 (572)
+.+..+++.+....+. .-|. ++.-+|+..|+.....+++..+.+. ...+......+.-++...|+.+.+.++++.
T Consensus 541 e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~~ 619 (963)
T 4ady_A 541 ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQL 619 (963)
T ss_dssp GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 8887777777211232 2232 2344677788887777788888864 222333333334455566777777777776
Q ss_pred hHHhcCCCCChhHHHHHHHHHHhhCCh-hHHHHHHHhccCCCChHHHHH
Q 046221 481 MIEENKVKPSQEHYGCVVDLLARAGCL-SDASGLAGKLLEGMGPNIWRA 528 (572)
Q Consensus 481 ~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~ 528 (572)
+.+ . ..|....-..+.-+....|.. .+|.+.+..+..+++..+-..
T Consensus 620 L~~-~-~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~ 666 (963)
T 4ady_A 620 LSK-S-HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQA 666 (963)
T ss_dssp GGG-C-SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHH
T ss_pred HHh-c-CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHH
Confidence 643 2 245544444444444445543 678888888887666665433
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.77 E-value=0.081 Score=39.50 Aligned_cols=91 Identities=12% Similarity=0.045 Sum_probs=65.1
Q ss_pred CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHH---HHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhhCChh
Q 046221 434 GHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTND---GLVIFNQMIEENKVKP--SQEHYGCVVDLLARAGCLS 508 (572)
Q Consensus 434 ~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 508 (572)
.....+.+-|.+....| .|+..+-..+..++.++.+..+ ++.+++...+.. .| .......|.-++.+.|+++
T Consensus 15 ~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~--~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS--CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHhhhHH
Confidence 34455666676666655 3777777788888888887766 888888886432 23 3446666777888999999
Q ss_pred HHHHHHHhccC-CCChHHHH
Q 046221 509 DASGLAGKLLE-GMGPNIWR 527 (572)
Q Consensus 509 ~A~~~~~~~~~-~~~~~~~~ 527 (572)
+|.+.++.+.+ .|+..--.
T Consensus 92 ~A~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 92 KALKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp HHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHH
Confidence 99999999887 66554333
No 230
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.26 E-value=0.2 Score=36.37 Aligned_cols=65 Identities=8% Similarity=-0.079 Sum_probs=44.4
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhcC------CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHh
Q 046221 420 VVSWNTIIYGYGVNGHGETALALYHKMTETG------EVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEE 484 (572)
Q Consensus 420 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 484 (572)
..-+-.+...+.+.|+++.|...|+...+.- -.+....+..|..++.+.|+++.|+.+++++++.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3344566677777778888877777766531 1123466777788888888888888888887653
No 231
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.21 E-value=0.075 Score=46.33 Aligned_cols=88 Identities=10% Similarity=0.119 Sum_probs=71.0
Q ss_pred hHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhh-----CChhHHHHHHHhccC-CCC--hHHHHHHHHHHhhhcCC
Q 046221 471 TNDGLVIFNQMIEENKVKPS---QEHYGCVVDLLARA-----GCLSDASGLAGKLLE-GMG--PNIWRALLSGCVLHVGR 539 (572)
Q Consensus 471 ~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~-~~~--~~~~~~l~~~~~~~~g~ 539 (572)
...|...++++++. .|+ -..|..|+..|.+. |+.++|.+.|+++.+ .|+ ..++..+...++...|+
T Consensus 179 l~~A~a~lerAleL---DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACDL---WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHH---CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 56788888888763 466 55888999999884 999999999999998 663 56666777777664599
Q ss_pred HHHHHHHHHHHHhCCCCCCCce
Q 046221 540 FQDAEALRSGSQKKGIIKIPGI 561 (572)
Q Consensus 540 ~~~A~~~~~~m~~~~~~~~~~~ 561 (572)
.++|.+.+++.++..+...|+.
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~~ 277 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPHN 277 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSSC
T ss_pred HHHHHHHHHHHHcCCCCCCCCh
Confidence 9999999999999988866664
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.18 E-value=0.21 Score=38.30 Aligned_cols=113 Identities=14% Similarity=0.100 Sum_probs=71.6
Q ss_pred CCHhHHHHHHHHHHhcCCh------HHHHHHHHHHHhcCCCCCHH-HHHHHHH------HHhccCChHHHHHHHHHhHHh
Q 046221 418 RDVVSWNTIIYGYGVNGHG------ETALALYHKMTETGEVPDSS-TYLSILN------ACGHAGLTNDGLVIFNQMIEE 484 (572)
Q Consensus 418 ~~~~~~~~l~~~~~~~~~~------~~A~~~~~~~~~~g~~p~~~-~~~~l~~------~~~~~g~~~~a~~~~~~~~~~ 484 (572)
.|..+|-..+...-+.|++ ++..++|++.... ++|+.. .+...+. .+...+++++|.++|+.+++.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4566777777776666777 7777788877775 566421 1111110 123447888999999988754
Q ss_pred cCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC-CC-ChHHHHHHHHHH
Q 046221 485 NKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE-GM-GPNIWRALLSGC 533 (572)
Q Consensus 485 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~ 533 (572)
+-+- ...|....+.-.++|+...|.+++.+... .| +.......+..+
T Consensus 90 -hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl 138 (161)
T 4h7y_A 90 -CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNL 138 (161)
T ss_dssp -CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHH
T ss_pred -hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhh
Confidence 2222 66777777778889999999999988776 22 233444444433
No 233
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.07 E-value=0.26 Score=38.36 Aligned_cols=65 Identities=5% Similarity=-0.027 Sum_probs=42.7
Q ss_pred CCHhHHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHhccCChHHHHHHHHHhHH
Q 046221 418 RDVVSWNTIIYGYGVNG---HGETALALYHKMTETGEVP--DSSTYLSILNACGHAGLTNDGLVIFNQMIE 483 (572)
Q Consensus 418 ~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 483 (572)
++..+.-.+..++++.+ +.++++.+|++..+.. .| +...+-.|.-+|.+.|++++|.++++.+++
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 56666666666677766 4557777777777653 24 234555566667777777777777777775
No 234
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.73 E-value=0.95 Score=33.95 Aligned_cols=140 Identities=12% Similarity=0.031 Sum_probs=83.4
Q ss_pred HHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHHHHHHhCCCHHHH
Q 046221 125 FINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAA 204 (572)
Q Consensus 125 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 204 (572)
+.-.|..++..++..+.... .+..-||.+|--....-+-+...++++.+ |--.|.. .+|++...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~I---GkiFDis----------~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKI---GSYFDLD----------KCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHH---GGGSCGG----------GCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHH---hhhcCcH----------hhhcHHHH
Confidence 34567777777777776653 24555665555544444444444444433 3222322 22333333
Q ss_pred HHHHhhcCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCccchHHHHHHhcccCChHHHHHHHHHHHHhCC
Q 046221 205 IQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGL 282 (572)
Q Consensus 205 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 282 (572)
...+-.+. .+....+..+..+...|.-++-.+++..+.. +.+|++.....+..+|.+.|+..++..++.++-+.|+
T Consensus 81 i~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 81 VECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 33333321 2334455667777888888888888888543 2467777777788888888888888888887777664
No 235
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.52 E-value=1.1 Score=33.65 Aligned_cols=57 Identities=18% Similarity=0.090 Sum_probs=25.7
Q ss_pred HHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhcc
Q 046221 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518 (572)
Q Consensus 460 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 518 (572)
..+......|+-|+..+++..++. +.+|++.....+..+|.+.|+..+|.+++.++.
T Consensus 96 ~ALd~lv~~~KkDqLdki~~~~l~--n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC 152 (172)
T 1wy6_A 96 KALDILVIQGKRDKLEEIGREILK--NNEVSASILVAIANALRRVGDERDATTLLIEAC 152 (172)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHhHHHHHHHHHhc--cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 333444444444444444444322 124444444445555555555555555444443
No 236
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.36 E-value=5.7 Score=41.29 Aligned_cols=251 Identities=12% Similarity=0.022 Sum_probs=131.4
Q ss_pred HHHhcCChhHHHHHHhccCCC----Ccc--hHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CCC---CHh----HHHHHH
Q 046221 295 MYSKCGDLDSSRSVFNQITEK----SLV--SWTAIISGYVQNGCAREALNQFIKMRQEKT-DSV---DSI----TLVSIL 360 (572)
Q Consensus 295 ~~~~~~~~~~a~~~~~~~~~~----~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~---~~~----~~~~ll 360 (572)
+....|+.+++..++..-... +.. .-..+.-+....|..+++..++........ ..- +.. ....+.
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 345667888888888776542 111 122233445556666678887776552321 001 111 112222
Q ss_pred HHhcccccHHHHHHHHHHHHHhcCCCchhHHH--HHHHHhhhcCChHHHHHHHHHcCCCCCHhHHH--HHHHHHHhcCCh
Q 046221 361 TASGELAALEICLQLHGIAFEAGFPRYRSVQN--CLISSYSKCGNVDLAYIVFEEMGFLRDVVSWN--TIIYGYGVNGHG 436 (572)
Q Consensus 361 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~ 436 (572)
-++.-.++- .+.+.+..+....- +...... ++...+.-.|+-+....++..+....+..... .+.-++...|+.
T Consensus 463 la~~GS~~e-ev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 463 LAAMGSANI-EVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHSTTCCCH-HHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HHhcCCCCH-HHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 233333443 34444444333221 1111112 23344556677777777777651112323333 333445578888
Q ss_pred HHHHHHHHHHHhcCCCCCH-HHH---HHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHH
Q 046221 437 ETALALYHKMTETGEVPDS-STY---LSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASG 512 (572)
Q Consensus 437 ~~A~~~~~~~~~~g~~p~~-~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 512 (572)
+.+..+.+.+... .+. .-| ..+.-+|+..|+.....+++..+.++. ..+..-...+.-++.-.|+.+.+.+
T Consensus 541 e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~--~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 541 ELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS--NDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp GGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred HHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC--cHHHHHHHHHHHHhhccCCHHHHHH
Confidence 8888888888763 333 222 234557889999888888999886432 2233333333334555777777888
Q ss_pred HHHhccCCCChHHHHHHHHHHhhh-cCC-HHHHHHHHHHHHh
Q 046221 513 LAGKLLEGMGPNIWRALLSGCVLH-VGR-FQDAEALRSGSQK 552 (572)
Q Consensus 513 ~~~~~~~~~~~~~~~~l~~~~~~~-~g~-~~~A~~~~~~m~~ 552 (572)
+++.+.+..++.+-.....++... .|. ..+|+..+..+..
T Consensus 616 lv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 616 IVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 888776644555433322222211 132 2577888888753
No 237
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.30 E-value=0.29 Score=38.41 Aligned_cols=112 Identities=7% Similarity=-0.067 Sum_probs=56.3
Q ss_pred HHHHhhhcCChHHHHHHHHHc----CCCCCH-------hHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCCCH-HHHHH
Q 046221 394 LISSYSKCGNVDLAYIVFEEM----GFLRDV-------VSWNTIIYGYGVNGHGETALALYHKMTETG-EVPDS-STYLS 460 (572)
Q Consensus 394 l~~~~~~~g~~~~A~~~~~~~----~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g-~~p~~-~~~~~ 460 (572)
-+..+...|.++.|+-+.+.+ +..|+. .++..+..++...+++..|...|++.++.. .-+.. .++..
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~ 105 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS 105 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 345556667777776666654 222331 234455566666777777777776654321 11111 11111
Q ss_pred HHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC
Q 046221 461 ILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 461 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
+. ....... .....++.+.-.-+..+|.+.|++++|+.+++.+..
T Consensus 106 ~~----~~ss~p~----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 106 TG----NSASTPQ----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp -------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred cc----ccCCCcc----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 10 0000000 001223444555577888889999999999888865
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.71 E-value=0.57 Score=35.99 Aligned_cols=101 Identities=14% Similarity=0.124 Sum_probs=72.6
Q ss_pred CHHHHHHHHHHHhccCCh------HHHHHHHHHhHHhcCCCCChh-HHHHHHH------HHHhhCChhHHHHHHHhccC-
Q 046221 454 DSSTYLSILNACGHAGLT------NDGLVIFNQMIEENKVKPSQE-HYGCVVD------LLARAGCLSDASGLAGKLLE- 519 (572)
Q Consensus 454 ~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~g~~~~A~~~~~~~~~- 519 (572)
|..+|...+...-+.|++ ++..++|++++.. ++|+.. .|...+. .+...++.++|.++|+.+..
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~--~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA--LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH--SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc--CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 557777777777777888 8889999999753 567642 2222221 23456899999999999865
Q ss_pred -CCChHHHHHHHHHHhhhcCCHHHHHHHHHHHHhCCCCC
Q 046221 520 -GMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIK 557 (572)
Q Consensus 520 -~~~~~~~~~l~~~~~~~~g~~~~A~~~~~~m~~~~~~~ 557 (572)
+.-...|.....--.++ |+.+.|.+++.+....+.+|
T Consensus 90 hKkFAKiwi~~AqFEiRq-gnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQ-GNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp CTTBHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTTCBC
T ss_pred hHHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHhccCCCc
Confidence 33366777666655566 99999999999988877653
No 239
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=93.71 E-value=3.6 Score=36.61 Aligned_cols=129 Identities=12% Similarity=0.135 Sum_probs=75.3
Q ss_pred hHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHccCCHHHHHHH----HHHHHhCCCCCCccchHHHHHHhccc
Q 046221 189 NSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKI----FREMRKSRIICDTVALLNLISVNAIL 264 (572)
Q Consensus 189 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~~~~~ll~~~~~~ 264 (572)
.++..-|.+.+++++|++++..- ...+.+.|+...|-++ ++-..+.+++++......++..+...
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~ 105 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAEL 105 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 34455577777788877765542 3445556666655543 45555667778877777777666553
Q ss_pred CCh-HHHHHHHHHHHH----hC--CCCCcchHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHHH
Q 046221 265 GDL-KRGKQLHAQVVL----GG--LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYV 328 (572)
Q Consensus 265 ~~~-~~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 328 (572)
..- ..-.++++.+.+ .| ..-++.....+...|.+.|++.+|+..|-.-...+...+..++.-+.
T Consensus 106 p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~ 176 (312)
T 2wpv_A 106 DPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWL 176 (312)
T ss_dssp CTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 211 112333444433 22 23466778888888999999999888776332223444444443333
No 240
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.64 E-value=3.8 Score=44.55 Aligned_cols=210 Identities=11% Similarity=-0.012 Sum_probs=118.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhccccc
Q 046221 289 SNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAA 368 (572)
Q Consensus 289 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 368 (572)
...++..+.+.+..+.+.++..-.. .+...--.+..++...|++++|...|++. ..+...+..... .
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~-~~~~~~yl~g~~~L~~ge~~~A~~~F~ka--a~~~~~~~~l~~----------~ 881 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTT--SLVLYSHTSQFA----------V 881 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHTC--CCSCTTCCCSCS----------S
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcc-CCcHHHHHHHHHHHhcCCHHHHHHHHHHH--hhhhcccchhhh----------h
Confidence 4456667777888888777665544 34444455667888999999999999887 333322211000 0
Q ss_pred HHHHHHHHHHHHHhc--CCCchhHHHHHHHHhhhcCChHHHHHHHHHc----C-CCCC--HhHHHHHHHHHHhcCChHHH
Q 046221 369 LEICLQLHGIAFEAG--FPRYRSVQNCLISSYSKCGNVDLAYIVFEEM----G-FLRD--VVSWNTIIYGYGVNGHGETA 439 (572)
Q Consensus 369 ~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~-~~~~--~~~~~~l~~~~~~~~~~~~A 439 (572)
... +..+.... ...-..-|..++..+.+.+.++.+.++-... + ..++ ...|..+.+++...|++++|
T Consensus 882 ~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~A 957 (1139)
T 4fhn_B 882 LRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAA 957 (1139)
T ss_dssp HHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGG
T ss_pred hcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHH
Confidence 000 00111110 1112345667777888888888887766654 1 1121 12577788888888899988
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhccCChH------------HHHHHHHHhHHhc-CCCCChhHHHHHHHHHHhhCC
Q 046221 440 LALYHKMTETGEVPDSSTYLSILNACGHAGLTN------------DGLVIFNQMIEEN-KVKPSQEHYGCVVDLLARAGC 506 (572)
Q Consensus 440 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~------------~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~ 506 (572)
...+-.+..... -...+..|+..++..|..+ +..+++..-.+.. .....+..|..|-..+...|+
T Consensus 958 y~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~d 1035 (1139)
T 4fhn_B 958 HVALMVLSTTPL--KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQN 1035 (1139)
T ss_dssp GHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCHHH--HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCC
Confidence 888877766433 3455566666555555443 3334443221111 112222345666666667777
Q ss_pred hhHHHHH-HHhc
Q 046221 507 LSDASGL-AGKL 517 (572)
Q Consensus 507 ~~~A~~~-~~~~ 517 (572)
+.+|-.+ ++.+
T Consensus 1036 yR~AA~vmYe~~ 1047 (1139)
T 4fhn_B 1036 YRDAAAIIYEKL 1047 (1139)
T ss_dssp TSCHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 7665544 4443
No 241
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=92.51 E-value=5.3 Score=37.00 Aligned_cols=158 Identities=10% Similarity=-0.031 Sum_probs=93.1
Q ss_pred HHHHHHhhhcCChHHHHHHHHHc----CCCC---CHhHHHHHHHHHHhcCC-hHHHHHHHHHHHhcCCCCCHHHH-----
Q 046221 392 NCLISSYSKCGNVDLAYIVFEEM----GFLR---DVVSWNTIIYGYGVNGH-GETALALYHKMTETGEVPDSSTY----- 458 (572)
Q Consensus 392 ~~l~~~~~~~g~~~~A~~~~~~~----~~~~---~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~g~~p~~~~~----- 458 (572)
..+...|.+.|+.++..+++... +.-| .......++..+....+ .+.-.++..+..+-. .-+..+|
T Consensus 23 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~~l 101 (394)
T 3txn_A 23 LQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 44677788888888888887776 1112 23445666777766433 333344444433310 0111222
Q ss_pred -HHHHHHHhccCChHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhhCChhHHHHHHHhccC-----CCChHH---
Q 046221 459 -LSILNACGHAGLTNDGLVIFNQMIEENKVKPS----QEHYGCVVDLLARAGCLSDASGLAGKLLE-----GMGPNI--- 525 (572)
Q Consensus 459 -~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~--- 525 (572)
.-++..|...|++.+|.+++.++.+.-.-..| ..++..-++.|...|+..++...+.+... .++|..
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 25677888899999998888888654321111 12455556778888898888888877654 244433
Q ss_pred HHHHHHHHhh-hcCCHHHHHHHHHHH
Q 046221 526 WRALLSGCVL-HVGRFQDAEALRSGS 550 (572)
Q Consensus 526 ~~~l~~~~~~-~~g~~~~A~~~~~~m 550 (572)
+...-+.++. ..++|+.|...|-+.
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 2222333334 348888888877665
No 242
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.25 E-value=5.9 Score=35.21 Aligned_cols=168 Identities=10% Similarity=0.058 Sum_probs=98.8
Q ss_pred hHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCcccCCCCCCceeHHHHHHHHHhCCChHHHHHH----HHHHHhCCCCC
Q 046221 73 TMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLL----FNFFRGSGLVP 148 (572)
Q Consensus 73 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~m~~~~~~p 148 (572)
+|.++..-+.+.+++++|..++..- ...+.+.|+...|.++ ++.+.+.++++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g------------------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~ 90 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG------------------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKV 90 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH------------------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH------------------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCC
Confidence 4455566677788888888874332 2345566777666554 56666778888
Q ss_pred CHhhHHHHHHHHhccCC-----hHHHHHHHHHHHHhcC--CCChhHHhHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHH
Q 046221 149 NAVTMLTVIRGCVALGS-----RALCELIHGLTIKLGL--ILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221 (572)
Q Consensus 149 ~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 221 (572)
+......++..+..... .+-......+-.+.|- .-++.....+...|.+.|++.+|+..|-.-...|...+..
T Consensus 91 ~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~ 170 (312)
T 2wpv_A 91 DDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVD 170 (312)
T ss_dssp SHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHH
Confidence 88888888877765332 1222333333333332 2356777888888999999999888776332224444544
Q ss_pred HHHHHHcc---CCHHHHHHHHHHHHhCCCCCCccchHHHHHHhcccCChHHHHHHHHHHHH
Q 046221 222 MMGLFVDF---EYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279 (572)
Q Consensus 222 li~~~~~~---~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 279 (572)
++--+... |...++--++-+ .+-.+.-.++...|..+++...+
T Consensus 171 ~l~~w~~~~~~~~~~e~dlf~~R---------------aVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 171 LLWDWLCQVDDIEDSTVAEFFSR---------------LVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHH---------------HHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCcchHHHHHHH---------------HHHHHHHhcCHHHHHHHHHHHHH
Confidence 44433333 333332221111 12234456788888888776653
No 243
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.02 E-value=8.5 Score=36.55 Aligned_cols=188 Identities=10% Similarity=0.059 Sum_probs=109.1
Q ss_pred CChHHHHHHHHHHHhcC----CCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHH----HhhhcC
Q 046221 331 GCAREALNQFIKMRQEK----TDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLIS----SYSKCG 402 (572)
Q Consensus 331 ~~~~~a~~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~g 402 (572)
|+++.|++.+..+.+.. ...........++..|...++++...+.+..+.+..-.. ......+++ .+....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCC
Confidence 67888888776665332 234445667778888888888888877776655432222 111222332 222233
Q ss_pred Ch--HHHHHHHHHc-CCCC--------CHhHHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCC---HHHHHHHHHHHh
Q 046221 403 NV--DLAYIVFEEM-GFLR--------DVVSWNTIIYGYGVNGHGETALALYHKMTET--GEVPD---SSTYLSILNACG 466 (572)
Q Consensus 403 ~~--~~A~~~~~~~-~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--g~~p~---~~~~~~l~~~~~ 466 (572)
.. +.-..+.+.. .+.. .......|...|...|++.+|..++..+... |..+. ...+..-++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 22 2233333333 1111 1122345677788888888888888887643 22221 234556667788
Q ss_pred ccCChHHHHHHHHHhHHh---cCCCCCh--hHHHHHHHHHHhhCChhHHHHHHHhccC
Q 046221 467 HAGLTNDGLVIFNQMIEE---NKVKPSQ--EHYGCVVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 467 ~~g~~~~a~~~~~~~~~~---~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
..+++.+|..+++++... ...+|+. ..+...+..+...+++.+|.+.|..+..
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 888888888888876321 1112221 2456667777778888888877776654
No 244
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.96 E-value=0.8 Score=35.95 Aligned_cols=113 Identities=11% Similarity=0.039 Sum_probs=59.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcC-CCCCH-------HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHH-HHH
Q 046221 427 IYGYGVNGHGETALALYHKMTETG-EVPDS-------STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHY-GCV 497 (572)
Q Consensus 427 ~~~~~~~~~~~~A~~~~~~~~~~g-~~p~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~l 497 (572)
+..+...+.++.|+-+.+.+.... ..|+. .++..+.+++...|++.+|...|+++++....-+....- ..+
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~ 106 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPST 106 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 556667777777777766654321 22331 355666777777888888888888776544322222111 111
Q ss_pred HHHHHhhCChhHHHHHHHhccCCCChHHHHHHHHHHhhhcCCHHHHHHHHHHH
Q 046221 498 VDLLARAGCLSDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGS 550 (572)
Q Consensus 498 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~A~~~~~~m 550 (572)
. ....... . ...+...-..-.+..|....|++++|+.+++.+
T Consensus 107 ~---~~ss~p~-------s-~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 107 G---NSASTPQ-------S-QCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ---------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred c---ccCCCcc-------c-ccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 0 0000000 0 001122233445777777779999999998874
No 245
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.66 E-value=0.94 Score=33.80 Aligned_cols=66 Identities=5% Similarity=-0.006 Sum_probs=41.5
Q ss_pred CCHhHHHHHHHHHHhcCChHH---HHHHHHHHHhcCCCC--CHHHHHHHHHHHhccCChHHHHHHHHHhHHh
Q 046221 418 RDVVSWNTIIYGYGVNGHGET---ALALYHKMTETGEVP--DSSTYLSILNACGHAGLTNDGLVIFNQMIEE 484 (572)
Q Consensus 418 ~~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 484 (572)
++..+--.+..++.+.++... ++.+++++...+ .| .....-.|.-++.+.|++++|.+.++.+++.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 555555556666666665544 677777766642 23 2244455556777788888888887777754
No 246
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.36 E-value=2.5 Score=42.87 Aligned_cols=51 Identities=20% Similarity=0.107 Sum_probs=36.9
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHh
Q 046221 429 GYGVNGHGETALALYHKMTETGEVPD-SSTYLSILNACGHAGLTNDGLVIFNQM 481 (572)
Q Consensus 429 ~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 481 (572)
.+...|+++.|+.+-++... ..|+ -.+|..|..+|...|+++.|+-.++.+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 35567777888887777777 4564 477778888888888888877777655
No 247
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.23 E-value=2 Score=40.05 Aligned_cols=68 Identities=12% Similarity=0.141 Sum_probs=38.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHH----hcCCCCChhH
Q 046221 424 NTIIYGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNACGHAGLTNDGLVIFNQMIE----ENKVKPSQEH 493 (572)
Q Consensus 424 ~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~ 493 (572)
..++..+...|++++|...+..+... .| +...+..++.++.+.|+..+|++.|+.+.+ ..|+.|+..+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~--~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 33445555566666666666665552 33 455666666666666666666666655422 2355565544
No 248
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=90.39 E-value=9.6 Score=34.16 Aligned_cols=130 Identities=13% Similarity=0.120 Sum_probs=75.5
Q ss_pred HhHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHccCCHHHHHHHH----HHHHhCCCCCCccchHHHHHHhcc
Q 046221 188 NNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIF----REMRKSRIICDTVALLNLISVNAI 263 (572)
Q Consensus 188 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~----~~m~~~~~~p~~~~~~~ll~~~~~ 263 (572)
|.++..-|.+.+++++|++++..- ...+.+.|+...+-++. +-..+.++++|..+...++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 334455577777777777765442 34455556665554443 455566778888777777777665
Q ss_pred cCCh-HHHHHHHHHHHH----hC--CCCCcchHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHHH
Q 046221 264 LGDL-KRGKQLHAQVVL----GG--LQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYV 328 (572)
Q Consensus 264 ~~~~-~~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 328 (572)
...- ..-..+.+.+++ .| ..-|+.....+...|.+.+++.+|+..|-.-.+++...+..++.-+.
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~ 178 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWY 178 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 5431 122333333333 23 23456677788888888899888888875322222345544443333
No 249
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.13 E-value=1.3 Score=44.80 Aligned_cols=52 Identities=13% Similarity=-0.091 Sum_probs=39.0
Q ss_pred HhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhcc
Q 046221 465 CGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518 (572)
Q Consensus 465 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 518 (572)
|...|+++-|+++-++++... |-+..+|..|..+|...|+++.|+-.++.+.
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~a--PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELA--LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHhcC--chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 556778888888888776543 4456688888888888888888888888775
No 250
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=90.06 E-value=16 Score=36.27 Aligned_cols=310 Identities=8% Similarity=-0.046 Sum_probs=161.7
Q ss_pred HHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhc-CCCChhHHhHHHHHHHhCCCHHH
Q 046221 125 FINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLG-LILDVSVNNSVLDMYSCLMDLDA 203 (572)
Q Consensus 125 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ 203 (572)
..+.|++..+..+...+...-+. .-..|..+..... .....++...++ +.. .+.....-+..+..+.+.+++..
T Consensus 16 a~~~~~~~~~~~l~~~l~~~pL~-~yl~y~~l~~~l~-~~~~~ev~~Fl~---~~~~~p~~~~Lr~~~l~~l~~~~~w~~ 90 (618)
T 1qsa_A 16 AWDNRQMDVVEQMMPGLKDYPLY-PYLEYRQITDDLM-NQPAVTVTNFVR---ANPTLPPARTLQSRFVNELARREDWRG 90 (618)
T ss_dssp HHHTTCHHHHHHHSGGGTTSTTH-HHHHHHHHHHTGG-GCCHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHCCCHHHHHHHHHhhcCCCcH-HHHHHHHHHhCcc-cCCHHHHHHHHH---HCCCChhHHHHHHHHHHHHHhCCCHHH
Confidence 34568888877777666443222 2224444333321 223443333333 321 12222344555677888889998
Q ss_pred HHHHHhhcCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCccchHHHHHHhcccCChHH--HHHHHHHHHHhC
Q 046221 204 AIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKR--GKQLHAQVVLGG 281 (572)
Q Consensus 204 a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~--a~~~~~~~~~~~ 281 (572)
...++.. ...+...-.....+....|+..+|......+-..| ...+.....++..+...|.+.. ...=++.+...+
T Consensus 91 ~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~ 168 (618)
T 1qsa_A 91 LLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAG 168 (618)
T ss_dssp HHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred HHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
Confidence 8887776 33455555667778888899888888888877665 3445666777777765554432 222222222222
Q ss_pred -----------CCCCcc-hHHHHHHHHHhcCChhHHHHHHhccCCCCcc---hHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 046221 282 -----------LQSELR-LSNSIIAMYSKCGDLDSSRSVFNQITEKSLV---SWTAIISGYVQNGCAREALNQFIKMRQE 346 (572)
Q Consensus 282 -----------~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 346 (572)
++++.. ....++..+ .+...+....... .++.. .+...+.-+.+ .+.+.|...+......
T Consensus 169 ~~~~a~~l~~~l~~~~~~~a~~~~al~---~~p~~~~~~~~~~-~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~ 243 (618)
T 1qsa_A 169 NTGLVTVLAGQMPADYQTIASAIISLA---NNPNTVLTFARTT-GATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQA 243 (618)
T ss_dssp CHHHHHHHHHTCCGGGHHHHHHHHHHH---HCGGGHHHHHHHS-CCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHH---hChHhHHHHHhcc-CCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhc
Confidence 111111 111111111 1222222222221 11111 11112223333 3778999999888633
Q ss_pred CCCCCCHh--HHHHHHHHhcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHcCCCC-C-HhH
Q 046221 347 KTDSVDSI--TLVSILTASGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEMGFLR-D-VVS 422 (572)
Q Consensus 347 ~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~-~~~ 422 (572)
....+... ....+.......+....+...+...... ..+.....-.+....+.|+++.|...|+.|...+ + ...
T Consensus 244 ~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~ 321 (618)
T 1qsa_A 244 QQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEW 321 (618)
T ss_dssp TTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhH
Confidence 33322222 2222333444445355666666654432 2333334444445557799999999999994332 2 221
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 046221 423 WNTIIYGYGVNGHGETALALYHKMTE 448 (572)
Q Consensus 423 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 448 (572)
.-=+..++...|+.++|..+|..+..
T Consensus 322 ~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 322 RYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 22244566778999999999988865
No 251
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=89.02 E-value=12 Score=33.47 Aligned_cols=168 Identities=11% Similarity=-0.010 Sum_probs=95.9
Q ss_pred hHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCcccCCCCCCceeHHHHHHHHHhCCChHHHHHHH----HHHHhCCCCC
Q 046221 73 TMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLF----NFFRGSGLVP 148 (572)
Q Consensus 73 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~m~~~~~~p 148 (572)
+|.++..-|.+.+++++|..++-.- ...+.+.|+...|-++- +-+.+.++++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G------------------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~ 92 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV------------------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRV 92 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH------------------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH------------------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCC
Confidence 4555666677889999988874332 23455667776665543 5566678889
Q ss_pred CHhhHHHHHHHHhccCChH-HHHHHHHHHH----Hhc--CCCChhHHhHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHH
Q 046221 149 NAVTMLTVIRGCVALGSRA-LCELIHGLTI----KLG--LILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTR 221 (572)
Q Consensus 149 ~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 221 (572)
|..+...++..+.....-+ .-..+.+.++ +.| ..-|+.....+...|.+.+++.+|+..|-.-..+++..+..
T Consensus 93 ~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~ 172 (336)
T 3lpz_A 93 DGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLAR 172 (336)
T ss_dssp CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHH
Confidence 9888888888877655321 1223333333 334 23455666777888888889888888774322222345544
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCccchHHHHHHhcccCChHHHHHHHHHHHH
Q 046221 222 MMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQLHAQVVL 279 (572)
Q Consensus 222 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 279 (572)
++.-+...+...++- .+. ...+-.|.-.+++..|..+++...+
T Consensus 173 mL~ew~~~~~~~e~d--------------lfi-aRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 173 MEYEWYKQDESHTAP--------------LYC-ARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHHHTSCGGGHH--------------HHH-HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCccHH--------------HHH-HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 443333332221111 111 1222234456677777777666553
No 252
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=88.87 E-value=6 Score=29.68 Aligned_cols=78 Identities=14% Similarity=0.019 Sum_probs=53.8
Q ss_pred CCCCHHHHHHHHHHHhccCCh---HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC-CCChHHH
Q 046221 451 EVPDSSTYLSILNACGHAGLT---NDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE-GMGPNIW 526 (572)
Q Consensus 451 ~~p~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~ 526 (572)
-.|+..|-..+..++.++.+. .+++.++++..+.. -.-....+.-|.-++.+.|++++|.++.+.+.+ .|+..--
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~-~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 356776766677777776654 46788888887543 111345666777788899999999999998887 6665544
Q ss_pred HHH
Q 046221 527 RAL 529 (572)
Q Consensus 527 ~~l 529 (572)
..|
T Consensus 115 ~~L 117 (134)
T 3o48_A 115 GAL 117 (134)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 253
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.75 E-value=5 Score=43.62 Aligned_cols=147 Identities=12% Similarity=0.035 Sum_probs=90.9
Q ss_pred hhHHHHHhhcCChhhHHHHhccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCC------------------
Q 046221 9 SKLLSNYFKSGKIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN------------------ 70 (572)
Q Consensus 9 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~------------------ 70 (572)
..++..+.+.|..+-|.++...++. ++..--.+..++...|++++|.+.|++.-. |+..+
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccccccc
Confidence 3466777788888888887776665 444445566778899999999999977421 11111
Q ss_pred -----cchHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCcccCCCCCC--ceeHHHHHHHHHhCCChHHHHHHHHHHHh
Q 046221 71 -----SFTMVGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPY--LVSCNAIVAGFINNKLFQQAVLLFNFFRG 143 (572)
Q Consensus 71 -----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 143 (572)
..-|..++..+-+.+.++.+.++-...++.....+ ++ ...|..+.+.+...|++++|...+-.+..
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~-------~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd 966 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDD-------EDLSIAITHETLKTACAAGKFDAAHVALMVLST 966 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCC-------HHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCC-------hhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC
Confidence 01245666666677777777777666665433211 11 12567777777777888877777766665
Q ss_pred CCCCCCHhhHHHHHHHHhccCCh
Q 046221 144 SGLVPNAVTMLTVIRGCVALGSR 166 (572)
Q Consensus 144 ~~~~p~~~~~~~ll~~~~~~~~~ 166 (572)
...+ ......++..++..|..
T Consensus 967 ~~~r--~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 967 TPLK--KSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp SSSC--HHHHHHHHHHHHHHCCH
T ss_pred HHHH--HHHHHHHHHHHHhCCCh
Confidence 4322 33444555555544443
No 254
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.61 E-value=3.6 Score=38.30 Aligned_cols=57 Identities=12% Similarity=0.038 Sum_probs=35.4
Q ss_pred HHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhcc
Q 046221 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518 (572)
Q Consensus 460 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 518 (572)
.++.++...|++++|+..++.++... +.+...+..++.+|.+.|+..+|.+.|++..
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~--P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44555566666666666666665444 4455566666666666666666666666543
No 255
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.02 E-value=21 Score=33.84 Aligned_cols=150 Identities=13% Similarity=0.052 Sum_probs=71.6
Q ss_pred cCCHHHHHHHHHHHHhC-----CCCCCccchHHHHHHhcccCChHHHHHHHHHHHHhCCCCCcchHHHHHH----HHHhc
Q 046221 229 FEYAGDALKIFREMRKS-----RIICDTVALLNLISVNAILGDLKRGKQLHAQVVLGGLQSELRLSNSIIA----MYSKC 299 (572)
Q Consensus 229 ~~~~~~a~~~~~~m~~~-----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~ 299 (572)
.|+++.|++.+..+.+. +..........++..|...++++.....+..+.+..-.. ......+++ .....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 36788888777666543 122233445667777788888887776665554322111 111122222 22222
Q ss_pred CChh--HHHHHHhccCC---CCcc-------hHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCH----hHHHHHHHHh
Q 046221 300 GDLD--SSRSVFNQITE---KSLV-------SWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDS----ITLVSILTAS 363 (572)
Q Consensus 300 ~~~~--~a~~~~~~~~~---~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~ll~~~ 363 (572)
...+ .-..+.+.+.. .-+. ....|...+...|++.+|.+++..+..+.....+. ..+...+..|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 2222 12222222221 1111 12345566677777777777777765332221111 1333344444
Q ss_pred cccccHHHHHHHHHHH
Q 046221 364 GELAALEICLQLHGIA 379 (572)
Q Consensus 364 ~~~~~~~~a~~~~~~~ 379 (572)
...+++..|..++..+
T Consensus 188 l~~~d~~~a~~~~~ki 203 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKI 203 (445)
T ss_dssp HHHTCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHH
Confidence 4555555555554443
No 256
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=85.82 E-value=9.9 Score=28.94 Aligned_cols=77 Identities=14% Similarity=0.021 Sum_probs=51.8
Q ss_pred CCCHHHHHHHHHHHhccCCh---HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhccC-CCChHHHH
Q 046221 452 VPDSSTYLSILNACGHAGLT---NDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLLE-GMGPNIWR 527 (572)
Q Consensus 452 ~p~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~ 527 (572)
.|+..+-..+..++.++.+. .+++.++++..+.. -.-......-|.-++.+.|++++|.++.+.+.+ .|+...-.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~-~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC-CSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-ccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 56776766777777776654 46777888887543 112344556677788889999999988888877 66554433
Q ss_pred HH
Q 046221 528 AL 529 (572)
Q Consensus 528 ~l 529 (572)
.|
T Consensus 115 ~L 116 (144)
T 1y8m_A 115 AL 116 (144)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 257
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=85.39 E-value=6.1 Score=33.95 Aligned_cols=115 Identities=16% Similarity=0.030 Sum_probs=74.8
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChh----HHHHHHHHHH
Q 046221 428 YGYGVNGHGETALALYHKMTETGEVP-DSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQE----HYGCVVDLLA 502 (572)
Q Consensus 428 ~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~ 502 (572)
....+.|+++.|+.....-++. .| |...-..|+..+|-.|++++|.+-++...+. .|+.. .|..+|.+-
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~aE- 78 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAA- 78 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHH-
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHHH-
Confidence 4567889999999998888875 45 7788888999999999999999999887643 45544 334443321
Q ss_pred hhCChhHHH-HHHHhccC---CCChHHHH-HHHHHHhh-hcCCHHHHHHHHHHHHhCC
Q 046221 503 RAGCLSDAS-GLAGKLLE---GMGPNIWR-ALLSGCVL-HVGRFQDAEALRSGSQKKG 554 (572)
Q Consensus 503 ~~g~~~~A~-~~~~~~~~---~~~~~~~~-~l~~~~~~-~~g~~~~A~~~~~~m~~~~ 554 (572)
... ++|.--.. .-.+..|. .++.+... ..|+.++|.++..+..+..
T Consensus 79 ------~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~a 130 (273)
T 1zbp_A 79 ------QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 130 (273)
T ss_dssp ------HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred ------HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Confidence 111 22222111 12223344 34444332 2599999999999997664
No 258
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=85.33 E-value=31 Score=34.25 Aligned_cols=115 Identities=10% Similarity=-0.038 Sum_probs=70.1
Q ss_pred CChHHHHHHHHHHHhcC-CCCCH--HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHH
Q 046221 434 GHGETALALYHKMTETG-EVPDS--STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDA 510 (572)
Q Consensus 434 ~~~~~A~~~~~~~~~~g-~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 510 (572)
.+.+.|...+....+.+ +.+.. .....+.......+...++...+..... . .++.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM-R--SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH-T--CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc-c--CCChHHHHHHHHHHHHCCCHHHH
Confidence 47889999998886543 22222 2333444445555645566777766532 2 24444444455555678999999
Q ss_pred HHHHHhccCCC-C-hHHHHHHHHHHhhhcCCHHHHHHHHHHHHh
Q 046221 511 SGLAGKLLEGM-G-PNIWRALLSGCVLHVGRFQDAEALRSGSQK 552 (572)
Q Consensus 511 ~~~~~~~~~~~-~-~~~~~~l~~~~~~~~g~~~~A~~~~~~m~~ 552 (572)
...|+.|...+ + ..-..-+..+.... |+.++|..+|+++.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~-g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLER-GREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHT-TCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHc-CCHHHHHHHHHHHhc
Confidence 99999997632 2 22222333444444 999999999888753
No 259
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=85.22 E-value=5.5 Score=29.88 Aligned_cols=67 Identities=9% Similarity=0.013 Sum_probs=27.4
Q ss_pred CCCCCHhHHHHHHHHhcccc---cHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc
Q 046221 348 TDSVDSITLVSILTASGELA---ALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM 414 (572)
Q Consensus 348 ~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 414 (572)
+..|+..+-.....++.+.. +...++.+++.+.+.+..-.....-.+.-++.+.|+++.|.+..+.+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~l 104 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL 104 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33444444444443333332 33344555555444331111222223334444455555555544444
No 260
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.98 E-value=17 Score=34.36 Aligned_cols=95 Identities=9% Similarity=-0.111 Sum_probs=54.2
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHc-----CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhc---CCCCCHHH--HHH
Q 046221 391 QNCLISSYSKCGNVDLAYIVFEEM-----GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTET---GEVPDSST--YLS 460 (572)
Q Consensus 391 ~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---g~~p~~~~--~~~ 460 (572)
...+...|.+.|+++.|.+.+.++ +...-...+-..+..+...+++..+...+.++... +-.|+... ...
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~ 213 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTY 213 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHH
Confidence 344666677777777777777766 22233455566666777777777777777665432 22222211 111
Q ss_pred HHHHHhccCChHHHHHHHHHhHHhc
Q 046221 461 ILNACGHAGLTNDGLVIFNQMIEEN 485 (572)
Q Consensus 461 l~~~~~~~g~~~~a~~~~~~~~~~~ 485 (572)
-+..+...+++.+|...|-++....
T Consensus 214 ~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 214 YGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhChHHHHHHHHHHHhccC
Confidence 2223456677777777777665443
No 261
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=81.52 E-value=16 Score=27.89 Aligned_cols=73 Identities=8% Similarity=0.083 Sum_probs=46.9
Q ss_pred CCCHhHHHHHHHHHHhcCCh---HHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChh
Q 046221 417 LRDVVSWNTIIYGYGVNGHG---ETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQE 492 (572)
Q Consensus 417 ~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 492 (572)
.|+..+--.+..++.++.+. .+++.+++++...+-.-.....-.|.-++.+.|++++|.++.+.+++. .|+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~---eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH---ERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT---CCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---CCCcH
Confidence 35655555556666666543 467778888777431112245556666788888888888888888753 45543
No 262
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=81.18 E-value=12 Score=26.40 Aligned_cols=63 Identities=17% Similarity=0.094 Sum_probs=48.3
Q ss_pred ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHHH
Q 046221 130 LFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLD 193 (572)
Q Consensus 130 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 193 (572)
|.-+..+-++.+....+.|+.......+++|.+.+++..|..+++-+...- .+...+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 444666777778788889999999999999999999999999998877653 333455666554
No 263
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=80.57 E-value=36 Score=31.48 Aligned_cols=59 Identities=17% Similarity=0.013 Sum_probs=29.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCCCH----hHHHHHHHHhcccccHHHHHHHHHHHH
Q 046221 322 AIISGYVQNGCAREALNQFIKMRQEKTDSVDS----ITLVSILTASGELAALEICLQLHGIAF 380 (572)
Q Consensus 322 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~ 380 (572)
.++..|...|++.+|.+++.++.+.-....|. ..+..-+..|...++..++...+....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 35566666666666666666665322111111 123333344555555555555554443
No 264
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.29 E-value=10 Score=35.83 Aligned_cols=100 Identities=11% Similarity=-0.080 Sum_probs=72.7
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHH--
Q 046221 420 VVSWNTIIYGYGVNGHGETALALYHKMTETGEVPD--SSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYG-- 495 (572)
Q Consensus 420 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-- 495 (572)
..++..+...|.+.|+++.|.+.|.++...-..+. ...+..+++.+...+++..+...++++.....-.++....+
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 34677888999999999999999999988643443 36788888999999999999999998854332233333222
Q ss_pred --HHHHHHHhhCChhHHHHHHHhccC
Q 046221 496 --CVVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 496 --~l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
.-+..+...+++.+|...|-+...
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 223345577899999888876544
No 265
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=78.31 E-value=15 Score=25.90 Aligned_cols=59 Identities=17% Similarity=0.231 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 046221 438 TALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVV 498 (572)
Q Consensus 438 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 498 (572)
++.+-++.+....+.|++......+++|-+.+++..|.++|+-...+.| +...+|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~l 86 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHH
Confidence 4555556666666666666666666677666777777776666643332 2233454444
No 266
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=76.72 E-value=21 Score=26.75 Aligned_cols=62 Identities=18% Similarity=0.117 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHhHHHH
Q 046221 131 FQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNNSVLD 193 (572)
Q Consensus 131 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 193 (572)
.-+..+-++.+....+.|+.......+++|.+.+++..|..+++-+...- .+...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 33556667777777888999999999999999999999999998877653 344555666554
No 267
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=74.41 E-value=41 Score=28.92 Aligned_cols=15 Identities=7% Similarity=0.036 Sum_probs=7.0
Q ss_pred HHhcCChhHHHHHHh
Q 046221 296 YSKCGDLDSSRSVFN 310 (572)
Q Consensus 296 ~~~~~~~~~a~~~~~ 310 (572)
.++.|+.+-+..+++
T Consensus 226 A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 226 AVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHh
Confidence 334455554444444
No 268
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=73.13 E-value=21 Score=25.02 Aligned_cols=78 Identities=9% Similarity=0.039 Sum_probs=50.2
Q ss_pred ChHHHHHHHHHHHHhcCCCChhHHhHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHh
Q 046221 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRK 244 (572)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 244 (572)
..++|.-|-+.+...+. ...+--+-+..+...|++++|..+.+....||...|-.|... +.|..+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 45666666665555442 222222334456778888888888888888888887776543 55777777777767766
Q ss_pred CC
Q 046221 245 SR 246 (572)
Q Consensus 245 ~~ 246 (572)
+|
T Consensus 97 sg 98 (115)
T 2uwj_G 97 SS 98 (115)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 269
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=72.34 E-value=22 Score=24.95 Aligned_cols=78 Identities=13% Similarity=0.090 Sum_probs=49.0
Q ss_pred ChHHHHHHHHHHHHhcCCCChhHHhHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHh
Q 046221 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMDLDAAIQIFREMECKDVISWTRMMGLFVDFEYAGDALKIFREMRK 244 (572)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 244 (572)
..++|.-|-+.+...+. ...+--+-+..+...|++++|..+.+....||...|-.|... +.|..+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 45566666555555442 222222334456677888888888888888888887776544 45666667666666665
Q ss_pred CC
Q 046221 245 SR 246 (572)
Q Consensus 245 ~~ 246 (572)
+|
T Consensus 98 sg 99 (116)
T 2p58_C 98 SQ 99 (116)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 270
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=71.49 E-value=38 Score=27.22 Aligned_cols=161 Identities=15% Similarity=0.068 Sum_probs=80.5
Q ss_pred HHhhcCChhhHHHHhccCCC-CChhhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcch---HHHHHHHHc-CCCChH
Q 046221 14 NYFKSGKIKEAENLFDEIPE-KNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFT---MVGVLVAAA-GLQNLE 88 (572)
Q Consensus 14 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~ll~~~~-~~g~~~ 88 (572)
..++.|+++....+++.-.. .+...-.+.+...+..|+.+.-.++.+.+.+.|..++... .+.|..++. ...+..
T Consensus 12 ~Aa~~g~~~~~~~l~~~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~ 91 (186)
T 3t8k_A 12 AAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDIT 91 (186)
T ss_dssp HHHHHSCHHHHHHHHHHSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHH
T ss_pred HHHHcCCHHHHHHHHhcCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchh
Confidence 34577888888888775433 1101112344445566677666777888888887766532 222322222 233444
Q ss_pred HHHHHHHHHHHhcCCCCcccCCCCCCceeHHHHHHHHHhCCCh-HHHHHHHHHHHh-CCCCCCHhhH--HHHHHHHhccC
Q 046221 89 LARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLF-QQAVLLFNFFRG-SGLVPNAVTM--LTVIRGCVALG 164 (572)
Q Consensus 89 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~-~~~~p~~~~~--~~ll~~~~~~~ 164 (572)
...++.+.+++.|...+. .|..-.++.+...+..+.. ..-.++++.+.+ .|..++.... .+-+....+.|
T Consensus 92 ~~~~iv~~Ll~~Gadin~------~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~ 165 (186)
T 3t8k_A 92 GTTELCKIFLEKGADITA------LYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQ 165 (186)
T ss_dssp HHHHHHHHHHHTTCCSSS------CBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTT
T ss_pred hHHHHHHHHHHCCCCCCc------cCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcC
Confidence 456677777777775442 2221121222222233322 344556666776 6666554321 12233344555
Q ss_pred ChHHHHHHHHHHHHhc
Q 046221 165 SRALCELIHGLTIKLG 180 (572)
Q Consensus 165 ~~~~a~~~~~~~~~~~ 180 (572)
..+.+.-+.+.+.+.+
T Consensus 166 ~~~~v~~L~~~~~~~~ 181 (186)
T 3t8k_A 166 KPIALKMMEDYIKKYN 181 (186)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHh
Confidence 5544444444444443
No 271
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=71.31 E-value=24 Score=24.79 Aligned_cols=74 Identities=9% Similarity=0.021 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHHHHcCChHHHHHHHHHHH
Q 046221 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344 (572)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 344 (572)
.++|..+-+.+...+. ...+--+-+..+...|++++|..+.+...-||+..|-++-. .+.|..+++...+.++.
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 4455555555544432 22222333445677899999999999999899988877643 46788888888887774
No 272
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=70.04 E-value=26 Score=24.67 Aligned_cols=74 Identities=15% Similarity=0.162 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHHHHcCChHHHHHHHHHHH
Q 046221 267 LKRGKQLHAQVVLGGLQSELRLSNSIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMR 344 (572)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 344 (572)
.++|..+-+.+...+. ...+--+-+..+...|++++|..+.+...-||+..|-++-. .+.|..+++...+.++.
T Consensus 23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 4455555555544432 22222333445677899999999999999999988877654 46677778877777774
No 273
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=69.40 E-value=33 Score=25.75 Aligned_cols=60 Identities=17% Similarity=0.232 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 046221 438 TALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVD 499 (572)
Q Consensus 438 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 499 (572)
+..+-++.+....+.|++......+++|-+.+++..|.++|+-...+- .+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHH
Confidence 345555666666667777777777777777777777777777664333 233444555543
No 274
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=67.82 E-value=49 Score=27.00 Aligned_cols=58 Identities=14% Similarity=0.107 Sum_probs=37.6
Q ss_pred cCChHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCh
Q 046221 433 NGHGETALALYHKMTETGEVPDS-STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQ 491 (572)
Q Consensus 433 ~~~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 491 (572)
.++...+..+|..|..+|+--.. .-|......+...|++.+|.++|+.-++ .+-.|-.
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~-~~A~P~~ 150 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAE-NNCRPYN 150 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCBSHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCccHH
Confidence 34456777777777777665543 5566666667777777777777777763 3345543
No 275
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=66.36 E-value=77 Score=28.78 Aligned_cols=66 Identities=12% Similarity=0.147 Sum_probs=40.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccc--cHHHHHHHHHHHHHhcCCCc
Q 046221 320 WTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELA--ALEICLQLHGIAFEAGFPRY 387 (572)
Q Consensus 320 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~ 387 (572)
...++.-|...++.++|...++++. . +..-.......+..++-+.+ ..+....++..+...|+-+.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~-~-p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~ 287 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELE-V-PHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 287 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHC-C-TTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHcc-C-CcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCH
Confidence 4667888888899999999998884 2 21112333444444554432 34556666666666664444
No 276
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.12 E-value=74 Score=30.57 Aligned_cols=59 Identities=12% Similarity=0.067 Sum_probs=29.6
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHcCCCCCH------hHHH-HHHHHHHhcCChHHHHHHHHHHHh
Q 046221 390 VQNCLISSYSKCGNVDLAYIVFEEMGFLRDV------VSWN-TIIYGYGVNGHGETALALYHKMTE 448 (572)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~-~l~~~~~~~~~~~~A~~~~~~~~~ 448 (572)
.+|.+++.|...+.++.|..+..+...+... ..|. .+...+.-.+++.+|.+.+.....
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3455666666666666666666666331110 1111 123334445666666666655554
No 277
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=65.91 E-value=40 Score=28.13 Aligned_cols=26 Identities=27% Similarity=0.181 Sum_probs=15.0
Q ss_pred HHHHcCCCChHHHHHHHHHHHHhcCC
Q 046221 78 LVAAAGLQNLELARSIHGLMVKFGLE 103 (572)
Q Consensus 78 l~~~~~~g~~~~a~~~~~~~~~~~~~ 103 (572)
|...++.|+.+.+..+++.+.+.+..
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~ 38 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRE 38 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 33444556766666666665555543
No 278
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=64.95 E-value=53 Score=26.39 Aligned_cols=179 Identities=10% Similarity=-0.031 Sum_probs=83.6
Q ss_pred HHHHhhcCChhhHHHHhccCC-C---CChhhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchH--HHHHHHHcCCC
Q 046221 12 LSNYFKSGKIKEAENLFDEIP-E---KNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTM--VGVLVAAAGLQ 85 (572)
Q Consensus 12 ~~~~~~~~~~~~A~~~~~~~~-~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~--~~ll~~~~~~g 85 (572)
+...+..|+.+....+++.-. . .+..-++.+..+ +..|+. ++++.+.+.|..++.... .+.+...+..|
T Consensus 9 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 83 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIA-VHNNDI----EIAKALIDRGADINLQNSISDSPYLYAGAQG 83 (201)
T ss_dssp HHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHH-HHHTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHH-HHcCCH----HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence 445567789999999998655 2 233333333333 445554 455555666766554321 23344445567
Q ss_pred ChHHHHHHHHHHHHhcCCCCcccCCCCCCceeHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCC
Q 046221 86 NLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGS 165 (572)
Q Consensus 86 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 165 (572)
+.+-+..+++. .+...+ ..+..-. +.+...+..|+.+-+..+++.-...--..|..-.+.+..++.....
T Consensus 84 ~~~~~~~Ll~~---~~~~~~------~~~~~g~-t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~ 153 (201)
T 3hra_A 84 RTEILAYMLKH---ATPDLN------KHNRYGG-NALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREG 153 (201)
T ss_dssp CHHHHHHHHHH---SCCCTT------CCCTTSC-CSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCC
T ss_pred CHHHHHHHHhc---cCcccc------cccCCCC-cHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccc
Confidence 76655544432 222211 1111111 2234455667765444444332000011222233444444433333
Q ss_pred hHHHHHHHHHHHHhcCCCChhHH--hHHHHHHHhCCCHHHHH
Q 046221 166 RALCELIHGLTIKLGLILDVSVN--NSVLDMYSCLMDLDAAI 205 (572)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~ 205 (572)
...-.++.+.+++.|..++.... .+-+...++.|+.+-+.
T Consensus 154 ~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~ 195 (201)
T 3hra_A 154 NQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISK 195 (201)
T ss_dssp SHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred hhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHH
Confidence 34445667777777766554321 12333344445544433
No 279
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=64.47 E-value=66 Score=28.49 Aligned_cols=67 Identities=10% Similarity=0.137 Sum_probs=41.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccc--cHHHHHHHHHHHHHhcCCCch
Q 046221 320 WTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELA--ALEICLQLHGIAFEAGFPRYR 388 (572)
Q Consensus 320 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~ 388 (572)
...++.-|...|+.++|.+.++++. . +..-.......+..+.-+.+ ..+.+..++..+.+.|+-+..
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~-~-p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~ 237 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELE-V-PHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVD 237 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHC-C-GGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC-C-CcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHH
Confidence 4567888888999999999999984 2 11112234444555555532 345666777777766654443
No 280
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=62.81 E-value=1.3e+02 Score=30.13 Aligned_cols=42 Identities=24% Similarity=0.195 Sum_probs=28.2
Q ss_pred cchhhHHHHHhhcCChhhHHHHhccCCC---CChhhHHHHHHHHhh
Q 046221 6 YNSSKLLSNYFKSGKIKEAENLFDEIPE---KNVVSWSIVIHGYSI 48 (572)
Q Consensus 6 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 48 (572)
.+| .++-.+.|+|++++|.++..+... .-...|-..+..|+.
T Consensus 154 p~W-a~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 154 PIW-ALIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp EHH-HHHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC--
T ss_pred ccH-HHHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHh
Confidence 356 478888999999999999987753 122466666777663
No 281
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=61.15 E-value=46 Score=28.30 Aligned_cols=123 Identities=6% Similarity=0.000 Sum_probs=58.7
Q ss_pred HHcCCCChHHHHHHHHHHHHhcCCCCcccCCCCCCceeHHHHHHHHH--hCCChHHHHHHHHHHHhCC---------CCC
Q 046221 80 AAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFI--NNKLFQQAVLLFNFFRGSG---------LVP 148 (572)
Q Consensus 80 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~m~~~~---------~~p 148 (572)
..++.|+.+....+++.+.+.+...+.-.. ..+..-++.|..+.. +.|+.+-+..+++.-...+ +..
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~--~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEF--REPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGG--SCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhh--hccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence 344567777777777777766654331000 001112333433332 5577766666665543211 110
Q ss_pred -CHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhH----------------HhHHHHHHHhCCCHHHHHHHHh
Q 046221 149 -NAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSV----------------NNSVLDMYSCLMDLDAAIQIFR 209 (572)
Q Consensus 149 -~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------------~~~l~~~~~~~~~~~~a~~~~~ 209 (572)
|..-.+ .+...+..|+.+ +.+.+++.|..++... -.+.+...+..|+.+-+.-+++
T Consensus 89 ~d~~g~t-~L~~A~~~g~~~----~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 89 VYYRGQT-ALHIAIERRCKH----YVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE 161 (260)
T ss_dssp SSEESBC-HHHHHHHTTCHH----HHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred cccCCCC-HHHHHHHcCCHH----HHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 111222 233344556655 3444455665555432 2334455556677666666666
No 282
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=59.83 E-value=75 Score=26.40 Aligned_cols=88 Identities=9% Similarity=-0.021 Sum_probs=49.9
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCCCCCCHhh--HHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhH--HhHHHHHHH
Q 046221 121 IVAGFINNKLFQQAVLLFNFFRGSGLVPNAVT--MLTVIRGCVALGSRALCELIHGLTIKLGLILDVSV--NNSVLDMYS 196 (572)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~ 196 (572)
.+...+..|+.+.+..+++.+.+.|..++... -...+...+..|+.+ +++.+++.|..++... -...+...+
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLAC 87 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHH
Confidence 35556677888888888887776665554332 112344444566654 4445555665544321 123444556
Q ss_pred hCCCHHHHHHHHhhcC
Q 046221 197 CLMDLDAAIQIFREME 212 (572)
Q Consensus 197 ~~~~~~~a~~~~~~~~ 212 (572)
..|+.+-...+++...
T Consensus 88 ~~~~~~~~~~Ll~~~~ 103 (241)
T 1k1a_A 88 EHRSPTCLRALLDSAA 103 (241)
T ss_dssp HTTCHHHHHHHHHHSC
T ss_pred HcCCHHHHHHHHHcCC
Confidence 6777777666666543
No 283
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=59.59 E-value=63 Score=28.09 Aligned_cols=226 Identities=15% Similarity=0.053 Sum_probs=111.4
Q ss_pred hcCChhhHHHHhccCC--CCChhhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHcCCCChHHHHHHH
Q 046221 17 KSGKIKEAENLFDEIP--EKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARSIH 94 (572)
Q Consensus 17 ~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 94 (572)
+..+..+..+++..-. ..|..-++.+ ..-+..|+.+-+. .+.+.|..++...-.+.+...+..|+.+-+..+
T Consensus 8 ~~~~~~~v~~lL~~~~~~~~d~~g~t~L-~~A~~~g~~~~v~----~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~L- 81 (285)
T 3kea_A 8 NTWKSKQLKSFLSSKDTFKADVHGHSAS-YYAIADNNVRLVC----TLLNAGALKNLLENEFPLHQAATLEDTKIVKIL- 81 (285)
T ss_dssp GGCCHHHHHHHHHSTTTTCCCTTSCCHH-HHHHHTTCHHHHH----HHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHH-
T ss_pred HhcCHHHHHHHHHhCCCCccCCCCCCHH-HHHHHcCCHHHHH----HHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHH-
Confidence 3445566666664321 1333333333 3334566665444 444445554443334456666777887755544
Q ss_pred HHHHHhcCCCCcccCCCCCCceeHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhH---HHHHHHHhccCChHHHHH
Q 046221 95 GLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTM---LTVIRGCVALGSRALCEL 171 (572)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~---~~ll~~~~~~~~~~~a~~ 171 (572)
.+.|...+. ++..-++. +...+..|+.+-+.- +.+.|..++.... .+.+...+..|+.+-+
T Consensus 82 ---l~~ga~~~~------~d~~g~t~-L~~A~~~g~~~~v~~----Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v-- 145 (285)
T 3kea_A 82 ---LFSGLDDSQ------FDDKGNTA-LYYAVDSGNMQTVKL----FVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIV-- 145 (285)
T ss_dssp ---HHTTCCTTC------CCTTSCCH-HHHHHHTTCHHHHHH----HHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHH--
T ss_pred ---HHCCCCCCC------cCCCCCcH-HHHHHHcCCHHHHHH----HHhcCCCCCccCCCCCCCHHHHHHHcCCHHHH--
Confidence 445654331 22222333 344456677654443 3444555443321 3445555566766544
Q ss_pred HHHHHHHhcCCCChh-HHhHHHHHHHhCCCHHHHHHHHhhcCC---CCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 046221 172 IHGLTIKLGLILDVS-VNNSVLDMYSCLMDLDAAIQIFREMEC---KDVISWTRMMGLFVDFEYAGDALKIFREMRKSRI 247 (572)
Q Consensus 172 ~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 247 (572)
+.+++.|..+... .-.+.+...+..|+.+-+.-+++.-.. .+..-++..+...+..|+. ++++.+.+.|.
T Consensus 146 --~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~ga 219 (285)
T 3kea_A 146 --SYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDI----EMLQALFKYDI 219 (285)
T ss_dssp --HHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCH----HHHHHHTTSCB
T ss_pred --HHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCH----HHHHHHHHcCC
Confidence 4445555433221 334455666778888877777654222 2333333323333444553 45666677787
Q ss_pred CCCccchHHHHHHhcccCChHHHHHHHH
Q 046221 248 ICDTVALLNLISVNAILGDLKRGKQLHA 275 (572)
Q Consensus 248 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 275 (572)
.++.... .-+..|+.+-+..+++
T Consensus 220 d~~~~~~-----~a~~~~~~~iv~~Ll~ 242 (285)
T 3kea_A 220 NIYSANL-----ENVLLDDAEIAKMIIE 242 (285)
T ss_dssp CSTTTTG-----GGGTTTCHHHHHHHHH
T ss_pred CCCCCCh-----hhhhcCCHHHHHHHHH
Confidence 7776543 1133455544444443
No 284
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=58.67 E-value=45 Score=30.15 Aligned_cols=25 Identities=8% Similarity=0.240 Sum_probs=17.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHH
Q 046221 219 WTRMMGLFVDFEYAGDALKIFREMR 243 (572)
Q Consensus 219 ~~~li~~~~~~~~~~~a~~~~~~m~ 243 (572)
...++.-|...|+.++|...++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 3556667777777777777777653
No 285
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=56.80 E-value=96 Score=26.71 Aligned_cols=51 Identities=20% Similarity=0.160 Sum_probs=31.5
Q ss_pred hcccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc
Q 046221 363 SGELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM 414 (572)
Q Consensus 363 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 414 (572)
..+.|+++.+++....-++.. |.|...-..+++.+|-.|+++.|.+-++..
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~ 57 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQS 57 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 345555555555555544443 555666666777777777777777666655
No 286
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=56.56 E-value=71 Score=28.26 Aligned_cols=65 Identities=12% Similarity=0.221 Sum_probs=42.1
Q ss_pred HHHHHHHHhcCChhHHHHHHhccCCCCc---chHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCCCCCHhH
Q 046221 290 NSIIAMYSKCGDLDSSRSVFNQITEKSL---VSWTAIISGYVQNGC--AREALNQFIKMRQEKTDSVDSIT 355 (572)
Q Consensus 290 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~ 355 (572)
..++.-|...|+.++|...++++..|.. .....+..++-+.++ .+...+++..+. ..+.-+....
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~-~~~~ls~~q~ 239 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLW-KSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHH-HHCSSCHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHH-HCCCCCHHHH
Confidence 5678889899999999999999987632 233334444444333 355667887776 4444444333
No 287
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=56.14 E-value=78 Score=25.48 Aligned_cols=14 Identities=14% Similarity=0.171 Sum_probs=5.7
Q ss_pred hHHHHHHHHHhcCC
Q 046221 288 LSNSIIAMYSKCGD 301 (572)
Q Consensus 288 ~~~~l~~~~~~~~~ 301 (572)
+-...+.++.+.+.
T Consensus 123 vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 123 VRIAAAFALGEIGD 136 (201)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCC
Confidence 33334444444443
No 288
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=56.12 E-value=35 Score=29.09 Aligned_cols=90 Identities=8% Similarity=-0.042 Sum_probs=48.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCCCCCCHhh-------HHHHHHHHh--ccCChHHHHHHHHHHHHhcC---------C
Q 046221 121 IVAGFINNKLFQQAVLLFNFFRGSGLVPNAVT-------MLTVIRGCV--ALGSRALCELIHGLTIKLGL---------I 182 (572)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-------~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~---------~ 182 (572)
.+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-...+. .
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 87 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFR 87 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccc
Confidence 34555677888888888887777666655333 244444432 56777766666655433110 0
Q ss_pred CChhHHhHHHHHHHhCCCHHHHHHHHhh
Q 046221 183 LDVSVNNSVLDMYSCLMDLDAAIQIFRE 210 (572)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 210 (572)
.....-.+.+...+..|+.+-+.-+++.
T Consensus 88 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ 115 (260)
T 3jxi_A 88 DVYYRGQTALHIAIERRCKHYVELLVEK 115 (260)
T ss_dssp CSSEESBCHHHHHHHTTCHHHHHHHHHT
T ss_pred ccccCCCCHHHHHHHcCCHHHHHHHHhC
Confidence 0000112334444556666666665554
No 289
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=54.13 E-value=91 Score=25.66 Aligned_cols=22 Identities=23% Similarity=0.211 Sum_probs=14.3
Q ss_pred hHHHHHhhcCChhhHHHHhccC
Q 046221 10 KLLSNYFKSGKIKEAENLFDEI 31 (572)
Q Consensus 10 ~l~~~~~~~~~~~~A~~~~~~~ 31 (572)
..+...++.|+++....+++.-
T Consensus 8 ~~l~~A~~~g~~~~v~~ll~~~ 29 (231)
T 3aji_A 8 IMICNLAYSGKLDELKERILAD 29 (231)
T ss_dssp SHHHHHHHHTCHHHHHHHHHHC
T ss_pred chHHHHHHhCCHHHHHHHHHhc
Confidence 3456666677777777777653
No 290
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=52.92 E-value=91 Score=25.31 Aligned_cols=98 Identities=15% Similarity=0.038 Sum_probs=43.5
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHH
Q 046221 418 RDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCV 497 (572)
Q Consensus 418 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 497 (572)
++...-...+.++.+.++.+ +...+.++.+ .|+...-...+.++.+.|..+ +...+..+++ .++..+-...
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~----d~~~~vr~~a 163 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK----DEDGWVRQSA 163 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT----CSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc----CCCHHHHHHH
Confidence 44444444444444444432 2333333332 345544445555555555432 3333333332 3455555555
Q ss_pred HHHHHhhCChhHHHHHHHhccCCCChHH
Q 046221 498 VDLLARAGCLSDASGLAGKLLEGMGPNI 525 (572)
Q Consensus 498 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 525 (572)
+.++.+.+. .++...+.++...+++.+
T Consensus 164 ~~aL~~~~~-~~~~~~L~~~l~d~~~~v 190 (211)
T 3ltm_A 164 ADALGEIGG-ERVRAAMEKLAETGTGFA 190 (211)
T ss_dssp HHHHHHHCS-HHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHhCc-hhHHHHHHHHHhCCCHHH
Confidence 555655554 334444444443344433
No 291
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=52.78 E-value=57 Score=27.53 Aligned_cols=23 Identities=13% Similarity=-0.039 Sum_probs=19.2
Q ss_pred HHHHHHhCCChHHHHHHHHHHHh
Q 046221 121 IVAGFINNKLFQQAVLLFNFFRG 143 (572)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~m~~ 143 (572)
-+..+....++++|.+++++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 46788899999999999887764
No 292
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=52.72 E-value=69 Score=23.87 Aligned_cols=64 Identities=14% Similarity=0.235 Sum_probs=42.8
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHcCCCCC---HhHHHHHHHHHHhcCC--hHHHHHHHHHHHhcCCCCCH
Q 046221 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRD---VVSWNTIIYGYGVNGH--GETALALYHKMTETGEVPDS 455 (572)
Q Consensus 391 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~g~~p~~ 455 (572)
...++.-|...|+.++|.+.+++++. |. ......+..++-+.++ .+.+..++..+.+.|+-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~-p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEV-PHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTC-GGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC-CccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 35678888899999999999999965 32 2333444445554432 35677788888877655433
No 293
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=52.26 E-value=72 Score=26.46 Aligned_cols=40 Identities=3% Similarity=-0.172 Sum_probs=22.7
Q ss_pred HHHHhCCCCCCcc--chHHHHHHhcccCChHHHHHHHHHHHH
Q 046221 240 REMRKSRIICDTV--ALLNLISVNAILGDLKRGKQLHAQVVL 279 (572)
Q Consensus 240 ~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~ 279 (572)
+.+.+.|..++.. .-.+.+...+..|+...+.++.+.+.+
T Consensus 194 ~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 194 VLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344455444332 223455666677777777777776654
No 294
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=51.96 E-value=26 Score=21.83 Aligned_cols=49 Identities=10% Similarity=0.018 Sum_probs=28.9
Q ss_pred hHHHHHHHhccCCCChHHHHHHHHHHhhhcCCHHHHHHHHHHHHhCCCCCCC
Q 046221 508 SDASGLAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKGIIKIP 559 (572)
Q Consensus 508 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 559 (572)
+++++.+..|--..+..+....+.++ .|+.+.|+..+-+|...+..++.
T Consensus 10 ee~l~~L~emFP~ld~~~I~~vL~a~---~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 10 EEDLKAIQDMFPNMDQEVIRSVLEAQ---RGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHTTT---TTCHHHHHHHHHHSSCCCCSCCC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHc---CCCHHHHHHHHHcCcCCCCCCCC
Confidence 45555555554344444444444433 37888888888777776666543
No 295
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=49.97 E-value=1.2e+02 Score=25.82 Aligned_cols=83 Identities=10% Similarity=0.029 Sum_probs=37.7
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCCCCCCHh---hHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChh--HHhHHHHH
Q 046221 120 AIVAGFINNKLFQQAVLLFNFFRGSGLVPNAV---TMLTVIRGCVALGSRALCELIHGLTIKLGLILDVS--VNNSVLDM 194 (572)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~ 194 (572)
..+...++.|+.+.. +.+.+.|..++.. .-...+...+..|+.+ +++.+++.|..++.. .-.+.+..
T Consensus 7 ~~L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~ 78 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLV----QQLLEGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFLL 78 (285)
T ss_dssp HHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred hHHHHHHHcCCHHHH----HHHHHcCCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHH
Confidence 345555666776544 3344444444322 1112344444556554 344444555544321 11223344
Q ss_pred HHhCCCHHHHHHHHhh
Q 046221 195 YSCLMDLDAAIQIFRE 210 (572)
Q Consensus 195 ~~~~~~~~~a~~~~~~ 210 (572)
.+..|+.+-+..+++.
T Consensus 79 A~~~~~~~~v~~Ll~~ 94 (285)
T 1wdy_A 79 AAIAGSVKLLKLFLSK 94 (285)
T ss_dssp HHHHTCHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHc
Confidence 4455666555555543
No 296
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=48.43 E-value=1.6e+02 Score=26.75 Aligned_cols=63 Identities=14% Similarity=0.236 Sum_probs=37.6
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHcCCCCC---HhHHHHHHHHHHhcCC--hHHHHHHHHHHHhcCCCCC
Q 046221 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRD---VVSWNTIIYGYGVNGH--GETALALYHKMTETGEVPD 454 (572)
Q Consensus 391 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~g~~p~ 454 (572)
.+.++.-|...|+.++|.+.+++++. |. ......+..++-+.++ .+....++..+.+.|+-+.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~-p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~ 287 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEV-PHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 287 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCC-TTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccC-CcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCH
Confidence 45677777778888888888888855 32 2333344444444332 3456667777776655443
No 297
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=47.69 E-value=95 Score=23.97 Aligned_cols=51 Identities=14% Similarity=0.204 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC
Q 046221 439 ALALYHKMTETGEVPDS-STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPS 490 (572)
Q Consensus 439 A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 490 (572)
+..+|..|..+|+--.. .-|......+...|++.+|.++|+.-++ .+-.|-
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~-~~A~P~ 135 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQ-NQAEPR 135 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCBSH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCccH
Confidence 66677777766655433 5556666666667777777777776653 334453
No 298
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=47.34 E-value=53 Score=24.52 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=10.0
Q ss_pred HHHHHHHcCChHHHHHHHHHH
Q 046221 323 IISGYVQNGCAREALNQFIKM 343 (572)
Q Consensus 323 l~~~~~~~~~~~~a~~~~~~~ 343 (572)
++.-|...|+.++|...++++
T Consensus 13 ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 13 LLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHh
Confidence 344444444445554444444
No 299
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=46.45 E-value=83 Score=25.84 Aligned_cols=48 Identities=8% Similarity=0.101 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHhcCCCCCH--HHHH-----HHHHHHhccCChHHHHHHHHHhHH
Q 046221 436 GETALALYHKMTETGEVPDS--STYL-----SILNACGHAGLTNDGLVIFNQMIE 483 (572)
Q Consensus 436 ~~~A~~~~~~~~~~g~~p~~--~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~ 483 (572)
.+.|+.+|+.+.+.---|+. .... ..+..|.+.|.+++|.+++++...
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 47788888887775322211 1122 223347777888888888877653
No 300
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=45.20 E-value=22 Score=22.15 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=20.5
Q ss_pred hHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 046221 471 TNDGLVIFNQMIEENKVKPSQEHYGCVVDLL 501 (572)
Q Consensus 471 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 501 (572)
.++|.+.|.+|++++++.|+- +|...+...
T Consensus 2 ~eEae~aF~~lL~~~~V~s~w-sweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTW-SFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSC-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCC-cHHHHHHHh
Confidence 357888888888888776553 565555554
No 301
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=44.83 E-value=2.1e+02 Score=27.06 Aligned_cols=127 Identities=14% Similarity=0.030 Sum_probs=71.5
Q ss_pred hcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc--CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHH
Q 046221 382 AGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM--GFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYL 459 (572)
Q Consensus 382 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~ 459 (572)
.|++--...|..-.+.+...|++++|.++-... |+-.+..|.+.+-..=...|+..-.+.+|..+.+.| +.+..--.
T Consensus 355 ~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~Ln~~ESl 433 (494)
T 1bpo_A 355 NNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKYESL 433 (494)
T ss_dssp TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCHHHHH
T ss_pred cCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-ccchHHhh
Confidence 345544555555666777788888888877766 555666666555444444566666777777777765 34442223
Q ss_pred HHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhcc
Q 046221 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518 (572)
Q Consensus 460 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 518 (572)
-+++.-...|+.+-..+++. +..+..+...=..+ +..+..-|..+|.+..
T Consensus 434 El~r~vL~q~r~~llekWl~----e~KL~~SEeLGDlv-----k~~d~~LAl~IY~~a~ 483 (494)
T 1bpo_A 434 ELCRPVLQQGRKQLLEKWLK----EDKLECSEELGDLV-----KSVDPTLALSVYLRAN 483 (494)
T ss_dssp HHHHHHHHTTCHHHHHHHHH----HTCSCCCHHHHHHH-----HHHCSHHHHHHHHHHC
T ss_pred HHhHHHHhccHHHHHHHHHh----cCCccccHHhHhhh-----hhcCHHHHHHHHHHcC
Confidence 34444455565555444443 33345554332211 4445666666666554
No 302
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=44.79 E-value=1.3e+02 Score=24.72 Aligned_cols=17 Identities=12% Similarity=0.198 Sum_probs=10.2
Q ss_pred HHhhcCChhhHHHHhcc
Q 046221 14 NYFKSGKIKEAENLFDE 30 (572)
Q Consensus 14 ~~~~~~~~~~A~~~~~~ 30 (572)
..++.|+++....+++.
T Consensus 15 ~A~~~g~~~~~~~Ll~~ 31 (240)
T 3eu9_A 15 KATQYGIYERCRELVEA 31 (240)
T ss_dssp HHHHTTCHHHHHHHHHT
T ss_pred HHHHcCChHHHHHHHHc
Confidence 34556666666666654
No 303
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=44.52 E-value=58 Score=31.45 Aligned_cols=65 Identities=6% Similarity=-0.116 Sum_probs=38.5
Q ss_pred CCChhHHHHHHHHHHhhCChhHHHH--------HHHhccCCCChHHHHHHHHHHhhhcCCHHHHHHHHHHHHhCC
Q 046221 488 KPSQEHYGCVVDLLARAGCLSDASG--------LAGKLLEGMGPNIWRALLSGCVLHVGRFQDAEALRSGSQKKG 554 (572)
Q Consensus 488 ~~~~~~~~~l~~~~~~~g~~~~A~~--------~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~A~~~~~~m~~~~ 554 (572)
..|......|-+-+...|..++-++ ++++- .|+...+.-|+.-|..+.|++-+|.+++..+-..+
T Consensus 175 s~DelFH~~LYdWli~~gl~d~LL~i~sPfle~yL~r~--~~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s~ 247 (525)
T 3i5p_A 175 YNDRLFHYHMYDWLVSQNREEKLLDIETPFILPYLMEK--AGSSLKISNILWVYYSRRSKFFESAEILYRLATSN 247 (525)
T ss_dssp SCCHHHHHHHHHHHHHTTCGGGGGGCCCTTHHHHHHHT--CC---CHHHHHHTHHHHCCSHHHHHHHHHHHHSSS
T ss_pred CChHHHHHHHHHHHHhCCCcchhhcCCCchHHHHHHhc--CccchhHHHHHHHHHHHcccHHHHHHHHHHHHhCC
Confidence 3455555566667777776555332 23221 34444455666666666688999988888887663
No 304
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=42.98 E-value=64 Score=24.95 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=10.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHH
Q 046221 322 AIISGYVQNGCAREALNQFIKM 343 (572)
Q Consensus 322 ~l~~~~~~~~~~~~a~~~~~~~ 343 (572)
.++.-|...|+.++|...++++
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHh
Confidence 3444444455555555555554
No 305
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=42.77 E-value=1.3e+02 Score=24.34 Aligned_cols=56 Identities=14% Similarity=0.057 Sum_probs=36.9
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCCh-----HHHHHHHHHhHHhcCCC
Q 046221 431 GVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLT-----NDGLVIFNQMIEENKVK 488 (572)
Q Consensus 431 ~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~-----~~a~~~~~~~~~~~~~~ 488 (572)
.+..+.+.|+-++-+|++.| .|....-..++.+.-..|.- ..|...++.. +.-|.+
T Consensus 25 iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~-~~iG~P 85 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAA-EKLGLP 85 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHH-HHHCTT
T ss_pred HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHH-HHhCCC
Confidence 34678899999999999998 77666666677776666642 2334444444 455553
No 306
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=42.52 E-value=1e+02 Score=25.96 Aligned_cols=84 Identities=12% Similarity=-0.016 Sum_probs=47.0
Q ss_pred HHHhhhcCChHHHHHHHHHc-----CCCC----CHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 046221 395 ISSYSKCGNVDLAYIVFEEM-----GFLR----DVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNAC 465 (572)
Q Consensus 395 ~~~~~~~g~~~~A~~~~~~~-----~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 465 (572)
++.+....++++|..++++. +.++ ........+..-.....-.-+..+.+++ .. .++.......+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHHH
Confidence 56667778888888877766 2221 1112222233333333333344444445 32 44555566667778
Q ss_pred hccCChHHHHHHHHHh
Q 046221 466 GHAGLTNDGLVIFNQM 481 (572)
Q Consensus 466 ~~~g~~~~a~~~~~~~ 481 (572)
.+.|+.++|.++|=+.
T Consensus 102 ~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHH
Confidence 8888888888877654
No 307
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=42.17 E-value=1.2e+02 Score=23.71 Aligned_cols=53 Identities=19% Similarity=0.245 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChh
Q 046221 439 ALALYHKMTETGEVPDS-STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQE 492 (572)
Q Consensus 439 A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 492 (572)
+..+|..|..+|+--.. .-|......+-..|++.+|.++|+..++ .+-.|-..
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~-~~A~P~~~ 132 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQ-QKAEPLER 132 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCBSHHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCcHHH
Confidence 55677777777665543 5566666666677777777777777763 33555443
No 308
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=42.16 E-value=98 Score=22.57 Aligned_cols=77 Identities=10% Similarity=0.013 Sum_probs=42.3
Q ss_pred ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHH
Q 046221 435 HGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLA 514 (572)
Q Consensus 435 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 514 (572)
++.+|+.-+++..+. .+|......++..+... ++.++++.+..++..|+ .+.++...+....+.|-.++. +.+
T Consensus 3 ~~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~-~~w 75 (119)
T 1wty_A 3 SLARAVERLKAALER--PKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED-PFW 75 (119)
T ss_dssp CHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC-HHH
T ss_pred HHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH-HHH
Confidence 345566666666543 34555555555544332 45566666666665665 344566666666677765544 444
Q ss_pred Hhcc
Q 046221 515 GKLL 518 (572)
Q Consensus 515 ~~~~ 518 (572)
..|.
T Consensus 76 ~~m~ 79 (119)
T 1wty_A 76 LEML 79 (119)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 309
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=41.53 E-value=1.3e+02 Score=23.78 Aligned_cols=81 Identities=12% Similarity=0.149 Sum_probs=54.0
Q ss_pred hhhcCChHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC---------------C-CH-HHHHH
Q 046221 398 YSKCGNVDLAYIVFEEMGFLRDVVSWNTIIYGYGVNGHGETALALYHKMTETGEV---------------P-DS-STYLS 460 (572)
Q Consensus 398 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~---------------p-~~-~~~~~ 460 (572)
+.-.|.+..++-++...+- .+..-|..| +|-+.+++..|+..++.+.+..+. | |. .-|+.
T Consensus 43 LyyngEY~R~Lf~L~~lNT-~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l 119 (242)
T 3kae_A 43 LYLNGEYTRALFHLHKLNT-CTSKYYESL--CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESL 119 (242)
T ss_dssp HHHTTCHHHHHHHHHTCCB-HHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHH
T ss_pred hhhcchHhHHHHHHHhcch-HHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHH
Confidence 3456777777777766533 333344444 667788888888888888854443 1 22 34666
Q ss_pred HHHHHhccCChHHHHHHHHHh
Q 046221 461 ILNACGHAGLTNDGLVIFNQM 481 (572)
Q Consensus 461 l~~~~~~~g~~~~a~~~~~~~ 481 (572)
+...|...|+.++|+..+..-
T Consensus 120 ~a~lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 120 LGDLCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHhhhHhhhh
Confidence 677788889999998877643
No 310
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=41.41 E-value=1.3e+02 Score=23.87 Aligned_cols=153 Identities=6% Similarity=-0.079 Sum_probs=68.5
Q ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhH--HhHHHHHHHhCCC
Q 046221 123 AGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSV--NNSVLDMYSCLMD 200 (572)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~ 200 (572)
...+..|+.+....++..-...--..|..-++.+ ...+..|+.+ +++.+++.|..++... -.+.+...+..|+
T Consensus 10 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L-~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 84 (201)
T 3hra_A 10 LEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPL-NIAVHNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQGR 84 (201)
T ss_dssp HHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHH-HHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHH-HHHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence 3445667777666665432200001122223333 3344556654 4445556665554322 2233455566778
Q ss_pred HHHHHHHHhhcCC----CCcccHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCC---CccchHHHHHHhcccCChHHHHH
Q 046221 201 LDAAIQIFREMEC----KDVISWTRMMGLFVDFEYAGDALKIFREMRKSR-IIC---DTVALLNLISVNAILGDLKRGKQ 272 (572)
Q Consensus 201 ~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p---~~~~~~~ll~~~~~~~~~~~a~~ 272 (572)
.+-+..+++.-.. .+....+.+ ...+..|+.+-+..+++ .| ..+ |..-.+.+..++........-.+
T Consensus 85 ~~~~~~Ll~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~ 159 (201)
T 3hra_A 85 TEILAYMLKHATPDLNKHNRYGGNAL-IPAAEKGHIDNVKLLLE----DGREDIDFQNDFGYTALIEAVGLREGNQLYQD 159 (201)
T ss_dssp HHHHHHHHHHSCCCTTCCCTTSCCSH-HHHHHTTCHHHHHHHHH----HCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHH
T ss_pred HHHHHHHHhccCcccccccCCCCcHH-HHHHHcCCHHHHHHHHH----cCCCCcCCCCCCCCCHHHHHHHhccchhhHHH
Confidence 8777777744321 222222222 23344555544443333 33 222 22233333333322222333355
Q ss_pred HHHHHHHhCCCCC
Q 046221 273 LHAQVVLGGLQSE 285 (572)
Q Consensus 273 ~~~~~~~~~~~~~ 285 (572)
+.+.+.+.|..++
T Consensus 160 ~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 160 IVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHTTCCTT
T ss_pred HHHHHHHCCCCCC
Confidence 6666666665544
No 311
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=40.64 E-value=1.5e+02 Score=24.29 Aligned_cols=82 Identities=9% Similarity=0.064 Sum_probs=36.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCCCCCCHhh---HHHHHHHHhccCChHHHHHHHHHHHHhcCCCChh--HHhHHHHHH
Q 046221 121 IVAGFINNKLFQQAVLLFNFFRGSGLVPNAVT---MLTVIRGCVALGSRALCELIHGLTIKLGLILDVS--VNNSVLDMY 195 (572)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~ 195 (572)
.+...+..|+.+- ++.+.+.|..++... -...+...+..|+.+ +++.+++.|..++.. .-...+...
T Consensus 45 ~L~~A~~~~~~~~----v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A 116 (240)
T 3eu9_A 45 LLHWAAINNRIDL----VKYYISKGAIVDQLGGDLNSTPLHWATRQGHLS----MVVQLMKYGADPSLIDGEGCSCIHLA 116 (240)
T ss_dssp HHHHHHHTTCHHH----HHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred HHHHHHHhCCHHH----HHHHHHcCCcchhhcCCcCCChhHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHHH
Confidence 4455566676543 344444444333211 112333334455544 334444555444422 112334444
Q ss_pred HhCCCHHHHHHHHhh
Q 046221 196 SCLMDLDAAIQIFRE 210 (572)
Q Consensus 196 ~~~~~~~~a~~~~~~ 210 (572)
+..|+.+-+..+++.
T Consensus 117 ~~~~~~~~~~~Ll~~ 131 (240)
T 3eu9_A 117 AQFGHTSIVAYLIAK 131 (240)
T ss_dssp HHTTCHHHHHHHHHT
T ss_pred HHcCHHHHHHHHHhc
Confidence 555666655555553
No 312
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=40.35 E-value=83 Score=24.31 Aligned_cols=63 Identities=14% Similarity=0.236 Sum_probs=41.7
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHcCCCCC---HhHHHHHHHHHHhcCC--hHHHHHHHHHHHhcCCCCC
Q 046221 391 QNCLISSYSKCGNVDLAYIVFEEMGFLRD---VVSWNTIIYGYGVNGH--GETALALYHKMTETGEVPD 454 (572)
Q Consensus 391 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~g~~p~ 454 (572)
.+.++.-|...|+.++|.+.+++++. |. ......+..++-+.++ .+.+..++..+.+.|+-+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~-p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEV-PHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTC-GGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCC-CcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 35678888889999999999999965 32 2333444445544332 3556777877777665443
No 313
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=40.23 E-value=1.8e+02 Score=25.07 Aligned_cols=142 Identities=11% Similarity=-0.003 Sum_probs=62.4
Q ss_pred HHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhH--HhHHHHHHHhCC
Q 046221 122 VAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSV--NNSVLDMYSCLM 199 (572)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~ 199 (572)
+...+..|+.+-+ +.+.+.|..++...-.+.+...+..|+.+-+. .+++.|..++... -.+.+...+..|
T Consensus 35 L~~A~~~g~~~~v----~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~----~Ll~~ga~~~~~d~~g~t~L~~A~~~g 106 (285)
T 3kea_A 35 SYYAIADNNVRLV----CTLLNAGALKNLLENEFPLHQAATLEDTKIVK----ILLFSGLDDSQFDDKGNTALYYAVDSG 106 (285)
T ss_dssp HHHHHHTTCHHHH----HHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHH----HHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHcCCHHHH----HHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHH----HHHHCCCCCCCcCCCCCcHHHHHHHcC
Confidence 3444556766544 44444555544432233445555666655443 3445565444321 122344445566
Q ss_pred CHHHHHHHHhhcCC---CCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcc-chHHHHHHhcccCChHHHHHHHH
Q 046221 200 DLDAAIQIFREMEC---KDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTV-ALLNLISVNAILGDLKRGKQLHA 275 (572)
Q Consensus 200 ~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~ 275 (572)
+.+-+.-+++.-.. .+...+...+...+..|+.+ +++.+.+.|..+... .-.+.+...+..|+.+-+..+++
T Consensus 107 ~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 182 (285)
T 3kea_A 107 NMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVS----IVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLD 182 (285)
T ss_dssp CHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHH----HHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHH
Confidence 66666655554222 22222223333334445443 333333344322111 22334444445555554444443
No 314
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=40.08 E-value=1.5e+02 Score=24.20 Aligned_cols=20 Identities=0% Similarity=-0.057 Sum_probs=13.2
Q ss_pred HHHHHHhCCChHHHHHHHHH
Q 046221 121 IVAGFINNKLFQQAVLLFNF 140 (572)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~ 140 (572)
.+...+..|+.+....+++.
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHh
Confidence 35556667777777766665
No 315
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=40.06 E-value=3e+02 Score=27.56 Aligned_cols=42 Identities=10% Similarity=0.048 Sum_probs=21.5
Q ss_pred HHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHc
Q 046221 40 SIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAA 82 (572)
Q Consensus 40 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 82 (572)
-.+|-.+.+.|++++|.++.++.... +.--...+...+..++
T Consensus 156 Wa~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~ 197 (661)
T 2qx5_A 156 WALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYA 197 (661)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC-
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHH
Confidence 34555667777777777777664422 1111134555555555
No 316
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=38.67 E-value=1.2e+02 Score=22.75 Aligned_cols=15 Identities=20% Similarity=0.445 Sum_probs=6.5
Q ss_pred hhcCChhhHHHHhcc
Q 046221 16 FKSGKIKEAENLFDE 30 (572)
Q Consensus 16 ~~~~~~~~A~~~~~~ 30 (572)
++.|+.+.+..+++.
T Consensus 10 ~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 10 AARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHTCHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHh
Confidence 334444444444443
No 317
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=38.42 E-value=2.2e+02 Score=25.54 Aligned_cols=25 Identities=12% Similarity=-0.017 Sum_probs=12.8
Q ss_pred HHHHHhCCChHHHHHHHHHHHhCCC
Q 046221 122 VAGFINNKLFQQAVLLFNFFRGSGL 146 (572)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~m~~~~~ 146 (572)
+...+..|+.+-+..+++.....|.
T Consensus 88 L~~A~~~g~~~~v~~Ll~~~~~~~~ 112 (364)
T 3ljn_A 88 IHLAVMANKTDLVVALVEGAKERGQ 112 (364)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHHhccccCC
Confidence 3444556666665555555433333
No 318
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=37.58 E-value=2e+02 Score=30.49 Aligned_cols=27 Identities=15% Similarity=-0.048 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhhCChhHHHHHHHhccC
Q 046221 493 HYGCVVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 493 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
.|..++..+.+.+-++-+.++.+.+.+
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~ 925 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADA 925 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 567777888888888888877776654
No 319
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=37.47 E-value=1.7e+02 Score=23.89 Aligned_cols=25 Identities=8% Similarity=-0.134 Sum_probs=11.5
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHc
Q 046221 390 VQNCLISSYSKCGNVDLAYIVFEEM 414 (572)
Q Consensus 390 ~~~~l~~~~~~~g~~~~A~~~~~~~ 414 (572)
.|......+...|++.+|.++|+.-
T Consensus 117 fYe~wA~~lE~~g~~~~A~~Vy~~G 141 (202)
T 3esl_A 117 FYEEFSKLLENAQFFLEAKVLLELG 141 (202)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344444444445555554444433
No 320
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=36.77 E-value=2.9e+02 Score=29.23 Aligned_cols=122 Identities=7% Similarity=-0.129 Sum_probs=74.1
Q ss_pred HHHHHHHhcCChhHHHHHHhccCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCCHh------HHHHHHHHhc
Q 046221 291 SIIAMYSKCGDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREALNQFIKMRQEKTDSVDSI------TLVSILTASG 364 (572)
Q Consensus 291 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~~ll~~~~ 364 (572)
.++..+...|..+-+.++...+.. +...--.+..+|...|++++|...|++. ..|...+.. ....++....
T Consensus 815 ~l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kA--A~gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTT--SLVLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTC--CCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHH--hhhcccCcccccchhhhhhccCccc
Confidence 366777788888888776655554 4444445678899999999999999987 444432211 1111111100
Q ss_pred ccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHhhhcCChHHHHHHHHHc--CCCC-CH----hHHHHHHHHHHhc
Q 046221 365 ELAALEICLQLHGIAFEAGFPRYRSVQNCLISSYSKCGNVDLAYIVFEEM--GFLR-DV----VSWNTIIYGYGVN 433 (572)
Q Consensus 365 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~-~~----~~~~~l~~~~~~~ 433 (572)
.-.....-|..++..+-+.+-++.+.++-+.. -..+ |. ..|..+.++.+..
T Consensus 892 ------------------~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 892 ------------------HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp ------------------TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred ------------------ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhC
Confidence 00112236778888888999988888877765 1111 22 3466666665543
No 321
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=35.56 E-value=1.6e+02 Score=23.22 Aligned_cols=60 Identities=5% Similarity=-0.223 Sum_probs=34.4
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCc--------ccCCCCCCceeHHHHHHHHHhCCChHHHHHHHHHHH
Q 046221 83 GLQNLELARSIHGLMVKFGLESDL--------FEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFR 142 (572)
Q Consensus 83 ~~g~~~~a~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 142 (572)
+..++..|...++.++...++.+. |---+......|+.+...+...|+.++|+..+..--
T Consensus 74 klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 74 KKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence 555666666666666544443220 100011223456777778888899999988876543
No 322
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=35.48 E-value=1.1e+02 Score=23.24 Aligned_cols=46 Identities=15% Similarity=0.088 Sum_probs=23.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcc
Q 046221 118 CNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVAL 163 (572)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 163 (572)
-..++..+...+..-.|.++++.+.+.+...+..|..-.|..+...
T Consensus 24 R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 69 (145)
T 2fe3_A 24 RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRES 69 (145)
T ss_dssp HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHC
Confidence 3344555555455555666666665555444444444444444333
No 323
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=34.96 E-value=1.9e+02 Score=23.80 Aligned_cols=27 Identities=7% Similarity=-0.063 Sum_probs=18.6
Q ss_pred HHHHhhhcCChHHHHHHHHHc-CCCCCH
Q 046221 394 LISSYSKCGNVDLAYIVFEEM-GFLRDV 420 (572)
Q Consensus 394 l~~~~~~~g~~~~A~~~~~~~-~~~~~~ 420 (572)
.+-.|.+.|.+++|.+++++. +..++.
T Consensus 120 AV~VCiek~~f~kA~eiLkr~~~~~~s~ 147 (235)
T 3bu8_A 120 AVIICIKNKEFEKASKILKKHMSKDPTT 147 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHSTTCGGG
T ss_pred HHHHHHHhcchHHHHHHHHHHhcCCCCc
Confidence 445677788888888888887 443343
No 324
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=34.68 E-value=2.8e+02 Score=25.65 Aligned_cols=86 Identities=16% Similarity=0.094 Sum_probs=39.9
Q ss_pred hHHHHHhhcCChhhHHHHhccCCCCChh--hHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcch--HHHHHHHHcCCC
Q 046221 10 KLLSNYFKSGKIKEAENLFDEIPEKNVV--SWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFT--MVGVLVAAAGLQ 85 (572)
Q Consensus 10 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~g 85 (572)
+.+...++.|+++-+..+++.-..++.. ...+.+..-+..|+.+-+. .+.+.|..++... -.+.+...+..|
T Consensus 16 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A~~~g 91 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAK----YLLQNKAKVNAKAKDDQTPLHCAARIG 91 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHH----HHHHHTCCSSCCCTTSCCHHHHHHHHT
T ss_pred CHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHH----HHHhCCCCCCCCCCCCCCHHHHHHHCC
Confidence 3455666778888877777754333211 1122333334555654333 3334444433221 122334444556
Q ss_pred ChHHHHHHHHHHHHhcCC
Q 046221 86 NLELARSIHGLMVKFGLE 103 (572)
Q Consensus 86 ~~~~a~~~~~~~~~~~~~ 103 (572)
+.+-+ +.+.+.|..
T Consensus 92 ~~~~v----~~Ll~~ga~ 105 (437)
T 1n11_A 92 HTNMV----KLLLENNAN 105 (437)
T ss_dssp CHHHH----HHHHHHTCC
T ss_pred CHHHH----HHHHhCCCC
Confidence 65433 333444543
No 325
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=34.01 E-value=1.9e+02 Score=23.46 Aligned_cols=40 Identities=18% Similarity=0.119 Sum_probs=28.1
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCC
Q 046221 431 GVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGL 470 (572)
Q Consensus 431 ~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 470 (572)
.+..|.+.|+-++-+|++.|-.|....-..++.+.-..|.
T Consensus 18 iRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGl 57 (201)
T 3bge_A 18 VRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGN 57 (201)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 3457788888888888888877766666666666555553
No 326
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=33.82 E-value=58 Score=24.89 Aligned_cols=64 Identities=11% Similarity=-0.087 Sum_probs=38.5
Q ss_pred hhHHHHhccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHcCCC
Q 046221 22 KEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQ 85 (572)
Q Consensus 22 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 85 (572)
+.+.+.+....-+....-..++..+...+..-.|.++++.+.+.+...+..|.-.-|..+...|
T Consensus 7 ~~~~~~l~~~g~r~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 7 KEALETLKETGVRITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 3444444443333444555667777766777788888888887765555555555555554444
No 327
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=33.73 E-value=92 Score=23.91 Aligned_cols=36 Identities=11% Similarity=-0.119 Sum_probs=15.4
Q ss_pred ChHHHHHHHHHHHHhcCCCChhHHhHHHHHHHhCCC
Q 046221 165 SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMD 200 (572)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (572)
..-.|.++++.+.+.+...+..|.-.-+..+...|-
T Consensus 41 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 41 THLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp SCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 344444555554444433333333333444444443
No 328
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=33.63 E-value=48 Score=23.22 Aligned_cols=39 Identities=10% Similarity=0.012 Sum_probs=23.4
Q ss_pred CChHHHHHHHHHHHHcCCCCCcchHHHHHHHHcCCCChHHHHH
Q 046221 50 GFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLELARS 92 (572)
Q Consensus 50 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 92 (572)
.+.+.|.++++.+.++| ..+|..++.++...|....|..
T Consensus 51 t~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRG----SQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp CHHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHHHHHH
Confidence 35666777777666554 3456666666666565554443
No 329
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=31.55 E-value=63 Score=21.78 Aligned_cols=32 Identities=13% Similarity=0.143 Sum_probs=22.6
Q ss_pred ChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 046221 470 LTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLA 502 (572)
Q Consensus 470 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 502 (572)
..++|...|.+|++..++.|+. +|...+....
T Consensus 15 t~eea~~~Fk~LL~e~~V~p~~-tWe~~~~~i~ 46 (82)
T 2dod_A 15 PLEARMKQFKDMLLERGVSAFS-TWEKELHKIV 46 (82)
T ss_dssp CHHHHHHHHHHHHHHTTCCSSS-CHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCcCCCC-CHHHHHHHHc
Confidence 3678888888888888887665 5655554443
No 330
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=31.31 E-value=2.1e+02 Score=23.23 Aligned_cols=37 Identities=14% Similarity=0.187 Sum_probs=25.4
Q ss_pred HcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccc
Q 046221 329 QNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELA 367 (572)
Q Consensus 329 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 367 (572)
+..+++.|+-++-+|. +.| .|....-..++.+....|
T Consensus 26 RGSDpDAAly~LaRml-~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 26 RGSDVDAALHYLARLV-EAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HTTCHHHHHHHHHHHH-HHT-CHHHHHHHHHHHHHHTTG
T ss_pred hcCCHHHHHHHHHHHH-HcC-CHHHHHHHHHHHHHhhcc
Confidence 4578888888888888 666 666655555665555554
No 331
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=31.13 E-value=2.4e+02 Score=23.85 Aligned_cols=198 Identities=12% Similarity=0.055 Sum_probs=0.0
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHHHhcCCCCcccCCCCCCceeHHHHHHHHHhCCChHHHHHHHHHH---------HhCC
Q 046221 75 VGVLVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFF---------RGSG 145 (572)
Q Consensus 75 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m---------~~~~ 145 (572)
...|...++.|+.+.+..+++.....+............+..+--.+...+.+.|+.+-+.-+++.- ...+
T Consensus 14 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~ 93 (273)
T 2pnn_A 14 RRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNAS 93 (273)
T ss_dssp HHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCC
T ss_pred chHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcc
Q ss_pred CCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhH----------------HhHHHHHHHhCCCHHHHHHHHh
Q 046221 146 LVPNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSV----------------NNSVLDMYSCLMDLDAAIQIFR 209 (572)
Q Consensus 146 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------------~~~l~~~~~~~~~~~~a~~~~~ 209 (572)
.......-.+.+...+..|+.+-+..+++. |..++... -.+.+...+..|+.+-+.-+++
T Consensus 94 ~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~----ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 169 (273)
T 2pnn_A 94 YTDSYYKGQTALHIAIERRNMTLVTLLVEN----GADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQ 169 (273)
T ss_dssp CCSTTTTTCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHH
T ss_pred cccccCCCCCHHHHHHHcCCHHHHHHHHHC----CCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Q ss_pred ------hcCCCCcccHHHHHHHHHccCCHHHH----HHHHHHHHhCCCCCC---------ccchHHHHHHhcccCChHHH
Q 046221 210 ------EMECKDVISWTRMMGLFVDFEYAGDA----LKIFREMRKSRIICD---------TVALLNLISVNAILGDLKRG 270 (572)
Q Consensus 210 ------~~~~~~~~~~~~li~~~~~~~~~~~a----~~~~~~m~~~~~~p~---------~~~~~~ll~~~~~~~~~~~a 270 (572)
.+...|..-.+.|..+.........- .++++.+.+.|..++ ...-.+.+...+..|+.+-+
T Consensus 170 ~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv 249 (273)
T 2pnn_A 170 NSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVL 249 (273)
T ss_dssp CSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHH
T ss_pred cccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHH
Q ss_pred HHHHHH
Q 046221 271 KQLHAQ 276 (572)
Q Consensus 271 ~~~~~~ 276 (572)
..+++.
T Consensus 250 ~~Ll~~ 255 (273)
T 2pnn_A 250 AYILQR 255 (273)
T ss_dssp HHHHHH
T ss_pred HHHHHC
No 332
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=31.11 E-value=1.7e+02 Score=21.98 Aligned_cols=12 Identities=17% Similarity=0.039 Sum_probs=4.6
Q ss_pred hCCChHHHHHHH
Q 046221 127 NNKLFQQAVLLF 138 (572)
Q Consensus 127 ~~~~~~~a~~~~ 138 (572)
..|+.+.+..++
T Consensus 11 ~~g~~~~v~~ll 22 (156)
T 1bd8_A 11 ARGDVQEVRRLL 22 (156)
T ss_dssp HHTCHHHHHHHH
T ss_pred HhCCHHHHHHHH
Confidence 334444333333
No 333
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=31.11 E-value=2.2e+02 Score=23.33 Aligned_cols=17 Identities=12% Similarity=-0.119 Sum_probs=8.0
Q ss_pred HHHhcCChhHHHHHHhc
Q 046221 295 MYSKCGDLDSSRSVFNQ 311 (572)
Q Consensus 295 ~~~~~~~~~~a~~~~~~ 311 (572)
.....|+...+..+.+.
T Consensus 216 ~A~~~~~~~~~~~l~~~ 232 (237)
T 3b7b_A 216 CASLNSQVWSALQMSKA 232 (237)
T ss_dssp HSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444555555544443
No 334
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=30.38 E-value=1.2e+02 Score=23.63 Aligned_cols=42 Identities=7% Similarity=-0.063 Sum_probs=17.4
Q ss_pred HHHhccCChHHHHHHHHHHHHh--cCCCChhHHhHHHHHHHhCC
Q 046221 158 RGCVALGSRALCELIHGLTIKL--GLILDVSVNNSVLDMYSCLM 199 (572)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~ 199 (572)
..+...+..-.|.++++.+.+. +...+..|--.-++.+...|
T Consensus 40 ~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 40 KTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 3333333444444555544444 33333333333334444444
No 335
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=30.34 E-value=1.9e+02 Score=23.50 Aligned_cols=44 Identities=14% Similarity=0.141 Sum_probs=31.3
Q ss_pred HHHHHH---HcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhcccc
Q 046221 323 IISGYV---QNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELA 367 (572)
Q Consensus 323 l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 367 (572)
+|+++. +..+++.|+-.+-+|. ..|..|....-..++.+....|
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl-~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARIL-TAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhhcc
Confidence 444443 4678899999999998 7887777776666666665554
No 336
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=30.26 E-value=2.3e+02 Score=23.26 Aligned_cols=39 Identities=26% Similarity=0.387 Sum_probs=25.7
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCC
Q 046221 432 VNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGL 470 (572)
Q Consensus 432 ~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 470 (572)
+..+.+.|+-++-+|++.|-.|....-..++.+.-..|.
T Consensus 47 RGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGl 85 (213)
T 3ctd_A 47 RGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGL 85 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 456777777777777777766666666666666555443
No 337
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=30.16 E-value=1e+02 Score=23.07 Aligned_cols=43 Identities=12% Similarity=0.027 Sum_probs=21.1
Q ss_pred HHHHHHHHHhCC-ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 046221 118 CNAIVAGFINNK-LFQQAVLLFNFFRGSGLVPNAVTMLTVIRGC 160 (572)
Q Consensus 118 ~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 160 (572)
-..++..+...+ ..-.|.++++.+.+.+...+..|..-.|..+
T Consensus 20 R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L 63 (136)
T 1mzb_A 20 RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQF 63 (136)
T ss_dssp HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHH
Confidence 334445554444 4555666666666555444444443333333
No 338
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=30.06 E-value=79 Score=22.07 Aligned_cols=38 Identities=16% Similarity=0.138 Sum_probs=29.5
Q ss_pred CChhHHHHHHhccCCCCcchHHHHHHHHHHcCChHHHH
Q 046221 300 GDLDSSRSVFNQITEKSLVSWTAIISGYVQNGCAREAL 337 (572)
Q Consensus 300 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 337 (572)
...++|.++++.++.++..+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 45788888888888888888888888887767655543
No 339
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=29.41 E-value=69 Score=20.86 Aligned_cols=32 Identities=9% Similarity=0.350 Sum_probs=22.6
Q ss_pred ChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 046221 470 LTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLA 502 (572)
Q Consensus 470 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 502 (572)
..++|...|.+|+++.++.|+. +|...+..+.
T Consensus 13 t~eea~~~F~~LL~e~~V~~~~-tWe~~~~~i~ 44 (71)
T 1uzc_A 13 TKEEAKQAFKELLKEKRVPSNA-SWEQAMKMII 44 (71)
T ss_dssp SHHHHHHHHHHHHHHTTCCTTC-CHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCcCCCC-CHHHHHHHHc
Confidence 4678888888888888876654 5666555444
No 340
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=29.04 E-value=2.4e+02 Score=23.13 Aligned_cols=62 Identities=15% Similarity=0.217 Sum_probs=40.2
Q ss_pred HHHHHHH---HcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhccccc-----HHHHHHHHHHHHHhcC
Q 046221 322 AIISGYV---QNGCAREALNQFIKMRQEKTDSVDSITLVSILTASGELAA-----LEICLQLHGIAFEAGF 384 (572)
Q Consensus 322 ~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~ 384 (572)
-+|+++. +..+++.|+-++-+|. ..|..|....-..++.+....|. ...|...++.....|.
T Consensus 37 d~ISAf~KSiRGSDpDAALywLaRMl-~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 37 DVISAFIKSIRGSDPDATLYWLANMV-EAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 3455554 5678999999999998 88888877777777766655553 2333444444444443
No 341
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=27.82 E-value=1.1e+02 Score=23.39 Aligned_cols=40 Identities=15% Similarity=0.083 Sum_probs=17.6
Q ss_pred HHHHHHHhCC-ChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 046221 120 AIVAGFINNK-LFQQAVLLFNFFRGSGLVPNAVTMLTVIRG 159 (572)
Q Consensus 120 ~l~~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 159 (572)
.++..+...+ ..-.|.++++.+.+.+...+..|..-.|..
T Consensus 21 ~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~ 61 (150)
T 2w57_A 21 KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQ 61 (150)
T ss_dssp HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 3344444333 344455555555554444444443333333
No 342
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=27.63 E-value=1.3e+02 Score=19.76 Aligned_cols=61 Identities=13% Similarity=0.093 Sum_probs=35.7
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHhccC-ChHHHHHHHHHHHHhcCCCChhHHhHHHHHHHhCCC
Q 046221 139 NFFRGSGLVPNAVTMLTVIRGCVALG-SRALCELIHGLTIKLGLILDVSVNNSVLDMYSCLMD 200 (572)
Q Consensus 139 ~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (572)
+.|.+.|++.+..- ..++..+...+ ..-.+.++.+.+.+.+...+..|-...+..+...|-
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 34566777666544 34455555543 455677777777766555555555555666655553
No 343
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.53 E-value=2.7e+02 Score=26.77 Aligned_cols=26 Identities=19% Similarity=0.192 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhhCChhHHHHHHHhcc
Q 046221 493 HYGCVVDLLARAGCLSDASGLAGKLL 518 (572)
Q Consensus 493 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 518 (572)
.++.++..|...+.++.|..++.+..
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~~ 258 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKLE 258 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHC
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcCc
Confidence 34445555555555555555555543
No 344
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=27.05 E-value=2.4e+02 Score=22.44 Aligned_cols=78 Identities=17% Similarity=0.098 Sum_probs=38.3
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHH
Q 046221 418 RDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCV 497 (572)
Q Consensus 418 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 497 (572)
++...-...+.++.+.++. .+...+..+.+ .++...-...+.++.+.|. .++...+..++++ ++..+-...
T Consensus 119 ~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~d----~~~~vr~~A 189 (201)
T 3ltj_A 119 EDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLAET----GTGFARKVA 189 (201)
T ss_dssp SSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHHH----CCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHhC----CCHHHHHHH
Confidence 4444444445555555543 23344444443 3455555555666666654 3455555555532 344444444
Q ss_pred HHHHHhh
Q 046221 498 VDLLARA 504 (572)
Q Consensus 498 ~~~~~~~ 504 (572)
+.++.+.
T Consensus 190 ~~aL~~l 196 (201)
T 3ltj_A 190 VNYLETH 196 (201)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 5554443
No 345
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=27.03 E-value=2.5e+02 Score=22.59 Aligned_cols=79 Identities=16% Similarity=0.095 Sum_probs=38.4
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHH
Q 046221 418 RDVVSWNTIIYGYGVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCV 497 (572)
Q Consensus 418 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 497 (572)
++...-...+.++.+.++.+ +...+..+.+ .++...-...+.++.+.+. .++...+..++++ ++..+-...
T Consensus 124 ~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~d----~~~~vr~~A 194 (211)
T 3ltm_A 124 EDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLAET----GTGFARKVA 194 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHHH----CCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHhC----CCHHHHHHH
Confidence 45444444555555555433 3444444443 3555555555666666554 4455555555542 344444444
Q ss_pred HHHHHhhC
Q 046221 498 VDLLARAG 505 (572)
Q Consensus 498 ~~~~~~~g 505 (572)
+.++.+.+
T Consensus 195 ~~aL~~~~ 202 (211)
T 3ltm_A 195 VNYLETHK 202 (211)
T ss_dssp HHHHHC--
T ss_pred HHHHHhcC
Confidence 55554443
No 346
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=26.60 E-value=1.3e+02 Score=25.37 Aligned_cols=25 Identities=8% Similarity=0.135 Sum_probs=12.3
Q ss_pred HHHHhCCChHHHHHHHHHHHhCCCC
Q 046221 123 AGFINNKLFQQAVLLFNFFRGSGLV 147 (572)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~m~~~~~~ 147 (572)
...++.|+.+....+++.+.+.|..
T Consensus 7 ~~A~~~g~~~~v~~ll~~l~~~g~~ 31 (256)
T 2etb_A 7 FSVVSRGVPEELTGLLEYLRWNSKY 31 (256)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 3344455555555555555544443
No 347
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=26.32 E-value=97 Score=23.78 Aligned_cols=63 Identities=10% Similarity=-0.079 Sum_probs=37.3
Q ss_pred hHHHHhccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHcCCC
Q 046221 23 EAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQ 85 (572)
Q Consensus 23 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 85 (572)
.+.+.+....-+....-..++..+...+..-.|.++++.+.+.+...+..|.-.-|..+...|
T Consensus 13 ~~~~~l~~~g~r~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 13 RLRMSIKKNGLKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHHCC--CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 344444433333445556677777777777888888888887765555555544455444444
No 348
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=26.32 E-value=1e+02 Score=22.90 Aligned_cols=45 Identities=20% Similarity=0.158 Sum_probs=29.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC
Q 046221 120 AIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164 (572)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 164 (572)
.++..+...+..-.|.++++.+.+.+...+..|..-.|..+...|
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 455555556666777788888877766666666555555555554
No 349
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=25.83 E-value=78 Score=23.57 Aligned_cols=48 Identities=8% Similarity=-0.089 Sum_probs=34.5
Q ss_pred HHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHcCCCCh
Q 046221 40 SIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNL 87 (572)
Q Consensus 40 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 87 (572)
..++..+...+..-.|.++++.+.+.+...+..|.-..|..+...|-+
T Consensus 14 ~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 14 AAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 456677777777888999999998877666666666666666665543
No 350
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=25.34 E-value=91 Score=23.75 Aligned_cols=42 Identities=7% Similarity=-0.050 Sum_probs=21.9
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHh
Q 046221 119 NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCV 161 (572)
Q Consensus 119 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 161 (572)
..++..+...+ .-.|.++++.+.+.+...+..|..-.|..+.
T Consensus 22 ~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~ 63 (145)
T 3eyy_A 22 QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLE 63 (145)
T ss_dssp HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHH
Confidence 34444444444 4566666666666655555555443344333
No 351
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=25.22 E-value=1.8e+02 Score=20.35 Aligned_cols=60 Identities=13% Similarity=0.091 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCC-hHH-HHHHHHHhHHhcCCCCChhHHHHH
Q 046221 438 TALALYHKMTETGEVPDSSTYLSILNACGHAGL-TND-GLVIFNQMIEENKVKPSQEHYGCV 497 (572)
Q Consensus 438 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~-~~~-a~~~~~~~~~~~~~~~~~~~~~~l 497 (572)
.|.++.+++...|+.|+..+..-++..|..-+- .++ +.+++.-....+|..|+..+.+.+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~lda~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQNEEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 356666777777777777666666666654443 222 112211112345666666665544
No 352
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=25.12 E-value=1.6e+02 Score=25.19 Aligned_cols=59 Identities=17% Similarity=0.121 Sum_probs=47.8
Q ss_pred HHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCChhHHHHHHHhcc
Q 046221 460 SILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGCLSDASGLAGKLL 518 (572)
Q Consensus 460 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 518 (572)
.|-..|....++.....++..|+....-.|+......++.+|.+.-+-.+|.+.++...
T Consensus 178 GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~L 236 (268)
T 2fv2_A 178 GLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCL 236 (268)
T ss_dssp HHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHS
T ss_pred hHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 34445667777878888888888776667899999999999999999999999988754
No 353
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=24.78 E-value=3e+02 Score=22.88 Aligned_cols=124 Identities=10% Similarity=-0.027 Sum_probs=60.8
Q ss_pred HHHHcCCCChHHHHHHHHHHHHhcCCCCcccCCCCCCceeHHHHHHHHHhC---CChHHHHHHHHHHHhCCCC-------
Q 046221 78 LVAAAGLQNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINN---KLFQQAVLLFNFFRGSGLV------- 147 (572)
Q Consensus 78 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~m~~~~~~------- 147 (572)
|...++.|+.+.+..+++.+...|...+.... ..|..-++.| ...+.. |+.+-+.-+++.-...+..
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~--~~d~~g~t~L-~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~ 82 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAY--TEGSTGKTCL-MKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQ 82 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGG--SBTTTTBCHH-HHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccc--cCCCCCCCHH-HHHHHccccchHHHHHHHHhcCCcccchhhhcccc
Confidence 44455678888777788877777764331000 0122223333 333444 7776666666554432211
Q ss_pred ---CCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhH---------------HhHHHHHHHhCCCHHHHHHHHh
Q 046221 148 ---PNAVTMLTVIRGCVALGSRALCELIHGLTIKLGLILDVSV---------------NNSVLDMYSCLMDLDAAIQIFR 209 (572)
Q Consensus 148 ---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---------------~~~l~~~~~~~~~~~~a~~~~~ 209 (572)
.|..-.+. +...+..|+.+-+ +.+++.|..++... -.+.+...+..|+.+-+.-+++
T Consensus 83 ~~~~d~~g~t~-L~~A~~~g~~~~v----~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~ 157 (256)
T 2etb_A 83 CTDEFYQGHSA-LHIAIEKRSLQCV----KLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE 157 (256)
T ss_dssp CCSTTTTTCCH-HHHHHHTTCHHHH----HHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred cccccccCCCH-HHHHHHcCCHHHH----HHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 11222233 3334455665443 44455565544332 2234444556666666666666
No 354
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=24.60 E-value=77 Score=24.79 Aligned_cols=53 Identities=9% Similarity=0.007 Sum_probs=33.5
Q ss_pred CChhhHHHHHHHHhhCCChHHHHHHHHHHHHc--CCCCCcchHHHHHHHHcCCCC
Q 046221 34 KNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS--GLLPNSFTMVGVLVAAAGLQN 86 (572)
Q Consensus 34 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~g~ 86 (572)
+.+..-..++..+...+..-.|.++++.+.+. +...+..|.-.-|..+...|-
T Consensus 30 r~T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 30 KYTKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp CCCHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 34445566777777777777888888888776 555555555444555544443
No 355
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=24.43 E-value=1.7e+02 Score=26.29 Aligned_cols=27 Identities=19% Similarity=0.351 Sum_probs=21.7
Q ss_pred HHHHHHHHhcCChhHHHHHHhccCCCC
Q 046221 290 NSIIAMYSKCGDLDSSRSVFNQITEKS 316 (572)
Q Consensus 290 ~~l~~~~~~~~~~~~a~~~~~~~~~~~ 316 (572)
..++.-|...|+.++|...++++..|.
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~ 41 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPS 41 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcc
Confidence 667788888888888888888887654
No 356
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=24.29 E-value=4.2e+02 Score=24.39 Aligned_cols=177 Identities=14% Similarity=0.029 Sum_probs=87.6
Q ss_pred hHHHHHhhcCChhhHHHHhccCCCC---ChhhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcch--HHHHHHHHcCC
Q 046221 10 KLLSNYFKSGKIKEAENLFDEIPEK---NVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFT--MVGVLVAAAGL 84 (572)
Q Consensus 10 ~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~ 84 (572)
+.+...++.|+.+-+..+++.-... +..-++. +..-+..|+.+ +++.+.+.|..++... -.+.+...+..
T Consensus 49 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~g~~~----~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~ 123 (437)
T 1n11_A 49 TPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTP-LHCAARIGHTN----MVKLLLENNANPNLATTAGHTPLHIAARE 123 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCH-HHHHHHHTCHH----HHHHHHHHTCCTTCCCTTCCCHHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCH-HHHHHHCCCHH----HHHHHHhCCCCCCCCCCCCCcHHHHHHHc
Confidence 4566677889988888888764432 2222223 33334556654 4444555565554332 12334444566
Q ss_pred CChHHHHHHHHHHHHhcCCCCcccCCCCCCceeHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhh--HHHHHHHHhc
Q 046221 85 QNLELARSIHGLMVKFGLESDLFEGLKNPYLVSCNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVT--MLTVIRGCVA 162 (572)
Q Consensus 85 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~ 162 (572)
|+.+.+..++ +.+..... .+..-+ +.+...+..|+.+ +++.+.+.|..|+... -...+...+.
T Consensus 124 g~~~~v~~Ll----~~~~~~~~------~~~~g~-t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 188 (437)
T 1n11_A 124 GHVETVLALL----EKEASQAC------MTKKGF-TPLHVAAKYGKVR----VAELLLERDAHPNAAGKNGLTPLHVAVH 188 (437)
T ss_dssp TCHHHHHHHH----HTTCCSCC------CCTTSC-CHHHHHHHTTCHH----HHHHHHHTTCCTTCCCSSCCCHHHHHHH
T ss_pred CCHHHHHHHH----hCCCCCcC------CCCCCC-CHHHHHHHcCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHH
Confidence 7776555554 34432210 111112 2344455667655 4445555555544321 1122333445
Q ss_pred cCChHHHHHHHHHHHHhcCCCChhH--HhHHHHHHHhCCCHHHHHHHHhh
Q 046221 163 LGSRALCELIHGLTIKLGLILDVSV--NNSVLDMYSCLMDLDAAIQIFRE 210 (572)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~ 210 (572)
.|+.+ +++.+++.|..++... -...+...+..|+.+-+..+++.
T Consensus 189 ~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 234 (437)
T 1n11_A 189 HNNLD----IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQY 234 (437)
T ss_dssp TTCHH----HHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred cCCHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 55554 3444455554443321 12334455667777776666654
No 357
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=24.17 E-value=95 Score=23.43 Aligned_cols=46 Identities=17% Similarity=0.252 Sum_probs=26.8
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC
Q 046221 119 NAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVTMLTVIRGCVALG 164 (572)
Q Consensus 119 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 164 (572)
..++..+...+..-.|.++++.+.+.+...+..|..-.|..+...|
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3455555555556667777777776665556555544444444444
No 358
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=23.85 E-value=2.6e+02 Score=23.63 Aligned_cols=182 Identities=10% Similarity=-0.031 Sum_probs=0.0
Q ss_pred hhHHHHHhhcCChhhHHHHhcc------CCCCChhhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcc--hHHHHHHH
Q 046221 9 SKLLSNYFKSGKIKEAENLFDE------IPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSF--TMVGVLVA 80 (572)
Q Consensus 9 ~~l~~~~~~~~~~~~A~~~~~~------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~ll~~ 80 (572)
.+.+...++.|+.+-+..+++. +...+..-++.+..+..... .++++.+.+.|..++.. .-.+.+..
T Consensus 10 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~-----~~~v~~Ll~~ga~~~~~~~~g~tpL~~ 84 (282)
T 1oy3_D 10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGE-----ASTVEKLYAAGAGVLVAERGGHTALHL 84 (282)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTC-----HHHHHHHHHTTCCSSCCCTTSCCHHHH
T ss_pred CcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCC-----HHHHHHHHHcCCCCCCCCCCCCCHHHH
Q ss_pred HcCCCChHHHHHHHH-------------------------------------------HHHHhcCCCCcccCCCCCCcee
Q 046221 81 AAGLQNLELARSIHG-------------------------------------------LMVKFGLESDLFEGLKNPYLVS 117 (572)
Q Consensus 81 ~~~~g~~~~a~~~~~-------------------------------------------~~~~~~~~~~~~~~~~~~~~~~ 117 (572)
.+..|+.+-+..+++ .....+...+ ..+..-
T Consensus 85 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g 158 (282)
T 1oy3_D 85 ACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLE------AENYDG 158 (282)
T ss_dssp HTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTT------CCCTTS
T ss_pred HHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCC------CcCCCC
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHhh---HHHHHHHHhccCChHHHHHHHHHHHHhcCCCChhHHh--HHH
Q 046221 118 CNAIVAGFINNKLFQQAVLLFNFFRGSGLVPNAVT---MLTVIRGCVALGSRALCELIHGLTIKLGLILDVSVNN--SVL 192 (572)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~ 192 (572)
++.|..+..... .++++.+.+.|..++... -.+.+...+..|+ .++.+.+++.|..++..... +-+
T Consensus 159 ~t~L~~A~~~g~-----~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~----~~~v~~Ll~~gad~~~~d~~g~tpL 229 (282)
T 1oy3_D 159 HTPLHVAVIHKD-----AEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQA----ASVLELLLKAGADPTARMYGGRTPL 229 (282)
T ss_dssp CCHHHHHHHTTC-----HHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTC----HHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred cCHHHHHHHcCC-----HHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCC----HHHHHHHHHcCCCCcccccCCCCHH
Q ss_pred HHHHhCCCHHHHHHHHhh
Q 046221 193 DMYSCLMDLDAAIQIFRE 210 (572)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~ 210 (572)
...++.|+.+-+.-+++.
T Consensus 230 ~~A~~~~~~~~v~~Ll~~ 247 (282)
T 1oy3_D 230 GSALLRPNPILARLLRAH 247 (282)
T ss_dssp HHHHTSSCHHHHHHHHHT
T ss_pred HHHHHcCCcHHHHHHHHc
No 359
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=23.40 E-value=3.2e+02 Score=22.69 Aligned_cols=53 Identities=17% Similarity=0.179 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhcCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC
Q 046221 437 ETALALYHKMTETGEVPDS-STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPS 490 (572)
Q Consensus 437 ~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 490 (572)
+.+..+|..|..+||--.. .-|......+...|++.+|..+|+.-++ .+-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~-~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKR-MKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCccH
Confidence 4566777777777765543 5566666667777777777777777763 334553
No 360
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=23.17 E-value=68 Score=19.93 Aligned_cols=24 Identities=4% Similarity=0.001 Sum_probs=15.5
Q ss_pred cCChHHHHHHHHHhHHhcCCCCCh
Q 046221 468 AGLTNDGLVIFNQMIEENKVKPSQ 491 (572)
Q Consensus 468 ~g~~~~a~~~~~~~~~~~~~~~~~ 491 (572)
.-+++.|...|.++...+.+||+.
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHH
Confidence 446777777777775555566553
No 361
>1jog_A Hypothetical protein HI0074; structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: a.24.16.2
Probab=22.84 E-value=1.8e+02 Score=22.16 Aligned_cols=39 Identities=10% Similarity=0.241 Sum_probs=17.9
Q ss_pred HHHHHHHHHhHHhcCCCC---ChhHHHHHHHHHHhhCChhHH
Q 046221 472 NDGLVIFNQMIEENKVKP---SQEHYGCVVDLLARAGCLSDA 510 (572)
Q Consensus 472 ~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A 510 (572)
+.++++.+..++..|+.| ++.++...+....+.|-+++.
T Consensus 55 Elawk~~k~~L~~~g~~~~~~~~~s~rd~~r~a~~~GlI~d~ 96 (146)
T 1jog_A 55 ELSLKMMKRQLQQDAINTDDIGAYGFKDILREALRFGLIGDM 96 (146)
T ss_dssp HHHHHHHHHHHHHHTCSCCCTTSCCHHHHHHHHHHTTSCSCH
T ss_pred HHHHHHHHHHHHHcCCCccccCCCCHHHHHHHHHHcCCCCcH
Confidence 344444444444444433 234444455555555544443
No 362
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=22.61 E-value=76 Score=23.99 Aligned_cols=47 Identities=11% Similarity=-0.067 Sum_probs=31.9
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHcCCC
Q 046221 39 WSIVIHGYSINGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQ 85 (572)
Q Consensus 39 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 85 (572)
-..++..+...+..-.|.++++.+.+.+...+..|.-.-|..+...|
T Consensus 16 R~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 16 RAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 34567777777778889999999988765566666555555554444
No 363
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=22.33 E-value=2.8e+02 Score=21.61 Aligned_cols=14 Identities=14% Similarity=0.190 Sum_probs=7.6
Q ss_pred cCChHHHHHHHHHh
Q 046221 468 AGLTNDGLVIFNQM 481 (572)
Q Consensus 468 ~g~~~~a~~~~~~~ 481 (572)
.|++-+|.++|+..
T Consensus 45 ~g~yfeaHEvLEe~ 58 (161)
T 2ijq_A 45 SGEFHESHDCFEDE 58 (161)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHH
Confidence 35555555555544
No 364
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=22.29 E-value=4e+02 Score=23.38 Aligned_cols=148 Identities=15% Similarity=0.085 Sum_probs=69.4
Q ss_pred HHHHHhCCChHHHHHHHHHHHhCCCCCCHh---hHHHHHHHHhccCChHHHHHHHHHHHHhcCCCChh--HHhHHHHHHH
Q 046221 122 VAGFINNKLFQQAVLLFNFFRGSGLVPNAV---TMLTVIRGCVALGSRALCELIHGLTIKLGLILDVS--VNNSVLDMYS 196 (572)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~ 196 (572)
+...+..|+.+-+..++++ .|..++.. -.+.+..++.. +.......+.+.+++.|..++.. .-.+.+...+
T Consensus 172 L~~A~~~g~~~~v~~LL~~---~gad~n~~d~~g~t~l~~~~~~-~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~ 247 (337)
T 4g8k_A 172 LMDAAEKGHVEVLKILLDE---MGADVNACDNMGRNALIHALLS-SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV 247 (337)
T ss_dssp HHHHHHHTCHHHHHHHHHH---SCCCTTCCCTTSCCHHHHHHHH-SCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHhc---cCCCcCccCCCCCcHHHHHHHH-cCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence 3444566776544444332 34443322 22223332221 22222334555567777665542 2233455666
Q ss_pred hCCCHHHHHHHHhhcC----CCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCccchHHHHHHhcccCChHHHHH
Q 046221 197 CLMDLDAAIQIFREME----CKDVISWTRMMGLFVDFEYAGDALKIFREMRKSRIICDTVALLNLISVNAILGDLKRGKQ 272 (572)
Q Consensus 197 ~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 272 (572)
..|..+....+++.-. ..|..-++.|..+ +..|+.+ +.+.+.+.|..++..+ .+...+..|+.+
T Consensus 248 ~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A-~~~g~~~----iv~~Ll~~GAd~n~~~---~L~~A~~~~~~~---- 315 (337)
T 4g8k_A 248 EKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA-VELKLKK----IAELLCKRGASTDCGD---LVMTARRNYDHS---- 315 (337)
T ss_dssp HTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHH-HHTTCHH----HHHHHHTTSCSSTTCC---HHHHHHHTTCHH----
T ss_pred HhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHH-HHcCCHH----HHHHHHHCCCCCCCCC---HHHHHHHcCCHH----
Confidence 7788887777765422 1233333333333 3445543 4445566777666654 233334445543
Q ss_pred HHHHHHHhCCCCC
Q 046221 273 LHAQVVLGGLQSE 285 (572)
Q Consensus 273 ~~~~~~~~~~~~~ 285 (572)
+.+.+++.|-.||
T Consensus 316 iv~~Ll~~GA~~d 328 (337)
T 4g8k_A 316 LVKVLLSHGAKED 328 (337)
T ss_dssp HHHHHHHTTCCC-
T ss_pred HHHHHHHCcCCCC
Confidence 3444555554444
No 365
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=22.03 E-value=4.2e+02 Score=23.53 Aligned_cols=109 Identities=13% Similarity=0.014 Sum_probs=0.0
Q ss_pred hhhcCChHHHHHHHHHc---------CCCCCHhHHHHHHHHHHh---------------cCChHHHHHHHHHHHhcCCCC
Q 046221 398 YSKCGNVDLAYIVFEEM---------GFLRDVVSWNTIIYGYGV---------------NGHGETALALYHKMTETGEVP 453 (572)
Q Consensus 398 ~~~~g~~~~A~~~~~~~---------~~~~~~~~~~~l~~~~~~---------------~~~~~~A~~~~~~~~~~g~~p 453 (572)
+...|++++|+..|+.+ ...-+......++..|.. ..+.....++---+....+.|
T Consensus 124 ~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELAAYFT~c~LQp 203 (325)
T 3mv2_A 124 NFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELAAYFTKAKLSP 203 (325)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHGGGSCCCH
T ss_pred HHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhccCCCcH
Q ss_pred CH--HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhhCC
Q 046221 454 DS--STYLSILNACGHAGLTNDGLVIFNQMIEENKVKPSQEHYGCVVDLLARAGC 506 (572)
Q Consensus 454 ~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 506 (572)
.. .+...-+..+.+.+++..|..+-+++++..+-++-..--..++..+-+.+.
T Consensus 204 ~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~qArkil~~ce~~~~ 258 (325)
T 3mv2_A 204 IHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAEQARKIKNKADSMAS 258 (325)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC
No 366
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=21.98 E-value=2.8e+02 Score=23.60 Aligned_cols=16 Identities=13% Similarity=0.256 Sum_probs=10.0
Q ss_pred hhcCChhhHHHHhccC
Q 046221 16 FKSGKIKEAENLFDEI 31 (572)
Q Consensus 16 ~~~~~~~~A~~~~~~~ 31 (572)
++.|+++.+..+++.-
T Consensus 19 ~~~G~~~~v~~LL~~~ 34 (269)
T 4b93_B 19 VADGDLEMVRYLLEWT 34 (269)
T ss_dssp HHTTCHHHHHHHHTCC
T ss_pred HHcCCHHHHHHHHHCC
Confidence 3567777776666543
No 367
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=21.88 E-value=2e+02 Score=24.71 Aligned_cols=16 Identities=13% Similarity=-0.130 Sum_probs=0.0
Q ss_pred HHHHHhhcCChhhHHH
Q 046221 11 LLSNYFKSGKIKEAEN 26 (572)
Q Consensus 11 l~~~~~~~~~~~~A~~ 26 (572)
.+...+..|+.++..+
T Consensus 18 ~lH~Aa~~g~~~~~~~ 33 (285)
T 3d9h_A 18 GSHMASMDGKQGGMDG 33 (285)
T ss_dssp ----------------
T ss_pred HHHHHhhcCCCCCccc
Confidence 3444445555554444
No 368
>3crd_A Raidd; caspase recruitment domain, apoptosis, homophilic interaction; NMR {Homo sapiens} SCOP: a.77.1.3
Probab=21.71 E-value=1.9e+02 Score=20.14 Aligned_cols=43 Identities=7% Similarity=0.133 Sum_probs=22.7
Q ss_pred ChhhHHHHhccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHHHHc
Q 046221 20 KIKEAENLFDEIPEKNVVSWSIVIHGYSINGFHEKSMKAFSHMMLS 65 (572)
Q Consensus 20 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 65 (572)
..++|..+++.++.....+|...+.++.. .....+.++.....
T Consensus 50 ~~~k~~~Lld~L~~rG~~Af~~F~~aL~~---~~~La~~L~~~~~~ 92 (100)
T 3crd_A 50 GLRKTMLLLDILPSRGPKAFDTFLDSLQE---FPWVREKLKKAREE 92 (100)
T ss_dssp SHHHHHHHHHHTTTSCSSCHHHHHHHCTT---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHh---CHHHHHHHHhhccc
Confidence 44566666666666566666666666543 33344444443333
No 369
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=21.45 E-value=3.5e+02 Score=23.04 Aligned_cols=56 Identities=7% Similarity=0.017 Sum_probs=25.7
Q ss_pred HHHHHhCCCHHHHHHHHhhcC-C---CCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 046221 192 LDMYSCLMDLDAAIQIFREME-C---KDVISWTRMMGLFVDFEYAGDALKIFREMRKSRI 247 (572)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~~~-~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 247 (572)
+...+..|+.+-+..+++.-. . .+..-++.+..+.........-.+++..+.+.|.
T Consensus 115 Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~ 174 (276)
T 4hbd_A 115 LHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGN 174 (276)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSC
T ss_pred HHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCC
Confidence 344456666666666665432 1 2333344444443333223334444555555443
No 370
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=21.17 E-value=1.1e+02 Score=21.07 Aligned_cols=36 Identities=6% Similarity=-0.040 Sum_probs=18.8
Q ss_pred CCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHcCCCChH
Q 046221 49 NGFHEKSMKAFSHMMLSGLLPNSFTMVGVLVAAAGLQNLE 88 (572)
Q Consensus 49 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 88 (572)
....+.|..+++.+.++| ...|..++.++...+...
T Consensus 49 ~t~~~kar~Lld~l~~kG----~~af~~F~~aL~~~~~~~ 84 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKD----NDSYVSFYNALLHEGYKD 84 (94)
T ss_dssp SSHHHHHHHHHHHHTTSC----HHHHHHHHHHHHHTTCHH
T ss_pred CChHHHHHHHHHHHHHcC----HHHHHHHHHHHHHcCHHH
Confidence 345556666666554333 345555555555554433
No 371
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.04 E-value=1.3e+02 Score=21.91 Aligned_cols=43 Identities=14% Similarity=0.082 Sum_probs=29.5
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHhccCChHHHHHHHHHHHH
Q 046221 136 LLFNFFRGSGLVPNAVTMLTVIRGCVALGSRALCELIHGLTIK 178 (572)
Q Consensus 136 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 178 (572)
-+|+.+....+.|+...-..-|..+...++++.|.++...+..
T Consensus 47 ~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 47 LLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456666666766655544555556778899999988887765
No 372
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=20.83 E-value=5.3e+02 Score=24.22 Aligned_cols=124 Identities=10% Similarity=-0.007 Sum_probs=67.4
Q ss_pred ChHHHHHHHHHHHhc-------CCCCCCHhHHHHHHHHhcccccHHHHHHHHHHHHHhcCCC----chhHHHHHHHHhhh
Q 046221 332 CAREALNQFIKMRQE-------KTDSVDSITLVSILTASGELAALEICLQLHGIAFEAGFPR----YRSVQNCLISSYSK 400 (572)
Q Consensus 332 ~~~~a~~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~ 400 (572)
..++...+++..... .+...+......+... ..|+...+..+++.+....... ...+
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It---------- 233 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLK---------- 233 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECC----------
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccC----------
Confidence 456666777766533 2334555556555555 3577777777777665543200 1111
Q ss_pred cCChHHHHHHHHHcCC--CCCHhHHHHHHHHH---HhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhccCC
Q 046221 401 CGNVDLAYIVFEEMGF--LRDVVSWNTIIYGY---GVNGHGETALALYHKMTETGEVPDSSTYLSILNACGHAGL 470 (572)
Q Consensus 401 ~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~---~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 470 (572)
.+...+++..... ..+...+-.++.++ .+.++.+.|+.++.+|.+.|..|....-..+..+.-..|.
T Consensus 234 ---~e~v~~~l~~~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~ 305 (447)
T 3pvs_A 234 ---PELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGN 305 (447)
T ss_dssp ---HHHHHHHHTCCCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred ---HHHHHHHHhhhhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccC
Confidence 2222222222211 11112222334444 3457899999999999999887776666666666655554
No 373
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=20.65 E-value=2.8e+02 Score=20.99 Aligned_cols=54 Identities=7% Similarity=0.123 Sum_probs=27.4
Q ss_pred HHHHhhcCChhhHHHHhccCCC---CChhhHHHHHHHHhhCCChHHHHHHHHHHHHcCCCCC
Q 046221 12 LSNYFKSGKIKEAENLFDEIPE---KNVVSWSIVIHGYSINGFHEKSMKAFSHMMLSGLLPN 70 (572)
Q Consensus 12 ~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 70 (572)
+...++.|+.+.+..+++.-.. .+..-++.+. .-+..|+. ++++.+.+.|..++
T Consensus 7 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~-~A~~~~~~----~~v~~Ll~~g~~~~ 63 (167)
T 3v31_A 7 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLM-WAAAHGQI----AVVEFLLQNGADPQ 63 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHH-HHHHTTCH----HHHHHHHHTTCCTT
T ss_pred HHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHH-HHHHCCCH----HHHHHHHHcCCCCC
Confidence 4555677887777777765432 2222233333 23344554 34444445555544
No 374
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=20.22 E-value=3e+02 Score=21.18 Aligned_cols=46 Identities=17% Similarity=0.165 Sum_probs=31.6
Q ss_pred HHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhhCChhHHHHHHHhccC
Q 046221 473 DGLVIFNQMIEENKVKPSQ-EHYGCVVDLLARAGCLSDASGLAGKLLE 519 (572)
Q Consensus 473 ~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 519 (572)
++..+|..|. .+|+--.. ..|......+...|++.+|.++++...+
T Consensus 83 dp~~if~~L~-~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~ 129 (152)
T 4a1g_A 83 DLHQFFEFLY-NHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQ 129 (152)
T ss_dssp CHHHHHHHHH-TTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHH-HCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3677777774 55554443 3566777777788888888888887665
No 375
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=20.10 E-value=4.6e+02 Score=23.29 Aligned_cols=16 Identities=0% Similarity=0.013 Sum_probs=7.7
Q ss_pred HHhcCChhHHHHHHhc
Q 046221 296 YSKCGDLDSSRSVFNQ 311 (572)
Q Consensus 296 ~~~~~~~~~a~~~~~~ 311 (572)
.+..|+.+-+..+++.
T Consensus 180 A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 180 AMEFRNREALDLMMDT 195 (364)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHhc
Confidence 3344555555555443
Done!