Your job contains 1 sequence.
>046223
MGETGISRFQGNLDPRAQEFRPTTLFRPPQVYYPYGAASPPTLPPYPSNDVQVVPFGGVG
YAQYPTHPQLGVPLPPPSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEG
IVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPYSSGLMLMNNDNNNNNLATGCYDN
QVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDGNNQGTIVVFNLDSGV
SSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFS
RPGGHSKKFFYANSSSCASSLNYSTIYQTRNSDCPPPPLSADPPSYSPRSFASQAPHFRK
KSPSNSFKGNPNNVNVTCSIEPSVASLSLANAIEDININPARRTRNCY
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 046223
(408 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2090350 - symbol:TEL1 "terminal EAR1-like 1" s... 421 4.0e-64 2
TAIR|locus:2008530 - symbol:TEL2 "terminal EAR1-like 2" s... 380 2.6e-59 2
TAIR|locus:2013583 - symbol:ML5 "MEI2-like protein 5" spe... 245 6.9e-23 2
TAIR|locus:2045605 - symbol:ML2 "MEI2-like 2" species:370... 243 2.0e-22 2
TAIR|locus:2117706 - symbol:ML3 "MEI2-like 3" species:370... 242 1.4e-20 2
TAIR|locus:2156166 - symbol:ML1 "MEI2-like protein 1" spe... 162 4.8e-11 2
TAIR|locus:2182885 - symbol:ML4 "MEI2-like 4" species:370... 169 8.2e-11 2
UNIPROTKB|E7ETC0 - symbol:TIAL1 "Nucleolysin TIAR" specie... 121 6.8e-07 1
DICTYBASE|DDB_G0279255 - symbol:DDB_G0279255 species:4468... 122 2.6e-06 2
GENEDB_PFALCIPARUM|PF13_0122 - symbol:PF13_0122 "cyclophi... 114 3.9e-06 1
UNIPROTKB|C0H5C7 - symbol:PF13_0122 "RRM containing cyclo... 114 3.9e-06 1
UNIPROTKB|E5RGV5 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 112 6.5e-06 1
POMBASE|SPBC4B4.07c - symbol:usp102 "U1 snRNP-associated ... 129 6.8e-06 1
UNIPROTKB|J9PA38 - symbol:SRSF6 "Uncharacterized protein"... 109 1.4e-05 1
WB|WBGene00004698 - symbol:rsp-1 species:6239 "Caenorhabd... 128 1.6e-05 1
UNIPROTKB|Q23121 - symbol:rsp-1 "Probable splicing factor... 128 1.6e-05 1
DICTYBASE|DDB_G0276005 - symbol:DDB_G0276005 species:4468... 145 2.2e-05 2
ZFIN|ZDB-GENE-030131-4862 - symbol:syncrip "synaptotagmin... 131 2.9e-05 1
GENEDB_PFALCIPARUM|PFE0160c - symbol:PFE0160c "Ser/Arg-ri... 123 5.8e-05 1
UNIPROTKB|Q8I468 - symbol:PFE0160c "Ser/Arg-rich splicing... 123 5.8e-05 1
UNIPROTKB|E5RG67 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 112 5.9e-05 1
ZFIN|ZDB-GENE-041219-1 - symbol:srsf6b "serine/arginine-r... 122 0.00010 1
UNIPROTKB|J3KP15 - symbol:SRSF2 "Serine/arginine-rich-spl... 100 0.00013 1
UNIPROTKB|J3QL05 - symbol:SRSF2 "Serine/arginine-rich-spl... 100 0.00013 1
UNIPROTKB|G4MTV6 - symbol:MGG_01579 "Pre-mRNA branch site... 100 0.00013 1
UNIPROTKB|Q01085 - symbol:TIAL1 "Nucleolysin TIAR" specie... 121 0.00014 1
UNIPROTKB|F2Z4H8 - symbol:TIAL1 "Uncharacterized protein"... 121 0.00015 1
GENEDB_PFALCIPARUM|PF14_0057 - symbol:PF14_0057 "RNA bind... 99 0.00017 1
UNIPROTKB|Q8IM34 - symbol:PF14_0057 "RNA binding protein,... 99 0.00017 1
DICTYBASE|DDB_G0268266 - symbol:DDB_G0268266 "RNA recogni... 102 0.00020 3
POMBASE|SPAC27D7.03c - symbol:mei2 "RNA-binding protein i... 97 0.00022 2
UNIPROTKB|H7BY49 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 106 0.00023 1
UNIPROTKB|Q800W4 - symbol:TIA1 "Uncharacterized protein" ... 118 0.00031 1
UNIPROTKB|F1NWI9 - symbol:SYNCRIP "Uncharacterized protei... 121 0.00031 1
UNIPROTKB|G4MVL2 - symbol:MGG_08898 "Differentiation regu... 122 0.00034 1
GENEDB_PFALCIPARUM|PFL1200c - symbol:PFL1200c "hypothetic... 96 0.00035 1
UNIPROTKB|Q5ZLF9 - symbol:SRSF5 "Uncharacterized protein"... 96 0.00035 1
UNIPROTKB|B4DJK0 - symbol:SRSF5 "Serine/arginine-rich-spl... 96 0.00035 1
UNIPROTKB|B4E241 - symbol:SFRS3 "Splicing factor, arginin... 96 0.00035 1
UNIPROTKB|G3V5K8 - symbol:SRSF5 "Serine/arginine-rich-spl... 96 0.00035 1
UNIPROTKB|Q8I5G8 - symbol:PFL1200c "Splicing factor 3b su... 96 0.00035 1
TAIR|locus:2077137 - symbol:AT3G46020 species:3702 "Arabi... 96 0.00035 1
TAIR|locus:2027372 - symbol:RBP45B species:3702 "Arabidop... 99 0.00036 2
UNIPROTKB|Q96B58 - symbol:TIA1 "TIA1 cytotoxic granule-as... 112 0.00040 1
UNIPROTKB|Q0VBZ6 - symbol:TIA1 "TIA1 cytotoxic granule-as... 117 0.00042 1
UNIPROTKB|F1PWU8 - symbol:TIA1 "Uncharacterized protein" ... 117 0.00043 1
ZFIN|ZDB-GENE-030131-2167 - symbol:tia1l "cytotoxic granu... 116 0.00044 1
TAIR|locus:2087457 - symbol:AT3G14100 species:3702 "Arabi... 108 0.00044 2
DICTYBASE|DDB_G0276725 - symbol:DDB_G0276725 "putative RN... 95 0.00046 1
UNIPROTKB|A6NKZ9 - symbol:TIAL1 "Nucleolysin TIAR" specie... 95 0.00046 1
TAIR|locus:2023903 - symbol:ATE1 "ATPase E1" species:3702... 108 0.00053 1
ASPGD|ASPL0000065410 - symbol:AN7456 species:162425 "Emer... 107 0.00059 1
UNIPROTKB|F1NCV3 - symbol:SRSF5A "Uncharacterized protein... 105 0.00075 1
UNIPROTKB|K7EJV5 - symbol:CIRBP "Cold-inducible RNA-bindi... 93 0.00075 1
UNIPROTKB|K7ENX8 - symbol:CIRBP "Cold-inducible RNA-bindi... 93 0.00075 1
POMBASE|SPBC29A3.07c - symbol:sab14 "U2 snRNP-associated ... 93 0.00075 1
UNIPROTKB|F6XIK8 - symbol:SYNCRIP "Uncharacterized protei... 117 0.00075 1
UNIPROTKB|D4A7H4 - symbol:Tia1 "Protein Tia1" species:101... 112 0.00084 1
UNIPROTKB|O60506 - symbol:SYNCRIP "Heterogeneous nuclear ... 117 0.00086 1
UNIPROTKB|C9JTN7 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 112 0.00086 1
UNIPROTKB|F2Z5D4 - symbol:SYNCRIP "Uncharacterized protei... 117 0.00087 1
UNIPROTKB|F1MCT8 - symbol:SYNCRIP "Uncharacterized protei... 117 0.00089 1
RGD|1305683 - symbol:Syncrip "synaptotagmin binding, cyto... 116 0.00089 1
UNIPROTKB|Q7TP47 - symbol:Syncrip "Heterogeneous nuclear ... 116 0.00089 1
UNIPROTKB|P19338 - symbol:NCL "Nucleolin" species:9606 "H... 102 0.00092 2
UNIPROTKB|Q4R4J7 - symbol:NCL "Nucleolin" species:9541 "M... 102 0.00093 2
UNIPROTKB|Q5RF26 - symbol:NCL "Nucleolin" species:9601 "P... 102 0.00093 2
UNIPROTKB|E7ETM7 - symbol:HNRNPR "Heterogeneous nuclear r... 115 0.00097 1
>TAIR|locus:2090350 [details] [associations]
symbol:TEL1 "terminal EAR1-like 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002686 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR007201 Pfam:PF04059
IPI:IPI00518069 RefSeq:NP_189242.1 UniGene:At.53499
ProteinModelPortal:F4JBE2 SMR:F4JBE2 PRIDE:F4JBE2
EnsemblPlants:AT3G26120.1 GeneID:822211 KEGG:ath:AT3G26120
OMA:NSRKICQ ArrayExpress:F4JBE2 Uniprot:F4JBE2
Length = 615
Score = 421 (153.3 bits), Expect = 4.0e-64, Sum P(2) = 4.0e-64
Identities = 78/109 (71%), Positives = 91/109 (83%)
Query: 201 ARGLVAGRPVWAQFIVPTCNAVPDGNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRE 260
ARG V+GRPVWAQF+VP +AVP G NQGT+V+FNLD VSS TL++IFQ +GP+KELRE
Sbjct: 185 ARGFVSGRPVWAQFVVPATSAVPGGCNQGTLVIFNLDPEVSSITLRQIFQVYGPIKELRE 244
Query: 261 TPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGGHSKKF 309
TP KKHQRF+EFYDVRDAA+A MNG+EI GK VVIEFSRPGG +F
Sbjct: 245 TPYKKHQRFVEFYDVRDAARAFDRMNGKEIGGKQVVIEFSRPGGIKNRF 293
Score = 253 (94.1 bits), Expect = 4.0e-64, Sum P(2) = 4.0e-64
Identities = 67/135 (49%), Positives = 81/135 (60%)
Query: 19 EFRPTTLFRPPQVYYPYGAASPPTLPPYPSNDVQVVP-FGGVGYAQYPTHPQLGVPLPPP 77
E R T F P +P + PP PP P P F GV AQ LP P
Sbjct: 56 EPRVFTFFNIPP--HPMMFSPPPPQPPPPPPR----PCFNGVSAAQR---------LPLP 100
Query: 78 STGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFK 137
S PTR+L L VP DV+E+ VRRDLEV+G+VRGVQMER+ EGIVTVHFYD+R A+ A +
Sbjct: 101 SNTPTRSLSLISVPRDVTESTVRRDLEVYGDVRGVQMERISEGIVTVHFYDIRDAKRAVR 160
Query: 138 EIREQHMQLQQQSYG 152
E+ +HMQ QQ+ G
Sbjct: 161 EVCGRHMQ--QQARG 173
Score = 109 (43.4 bits), Expect = 5.7e-49, Sum P(2) = 5.7e-49
Identities = 30/85 (35%), Positives = 40/85 (47%)
Query: 1 MGETGISRFQGNLDPRAQEFRPTTLFRPPQ--VYYPYGAASPPTLPPYPSNDVQVVPFGG 58
M ++ + F GNLDPRAQEF P F P ++PY P PP P + + P
Sbjct: 1 MEDSRLFPFVGNLDPRAQEFIP---FNPISSGFHFPYTPPPPQLPPPLPPSSYGLSPTEP 57
Query: 59 VGYAQY--PTHPQLGVPLPPPSTGP 81
+ + P HP + P PPP P
Sbjct: 58 RVFTFFNIPPHPMMFSP-PPPQPPP 81
Score = 86 (35.3 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 23/93 (24%), Positives = 48/93 (51%)
Query: 198 PPPARGLVAGRPVWAQFIVPTCNAVPDGNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKE 257
PPP R G V A +P +P ++ + ++ V+ ST++ + +G V+
Sbjct: 81 PPPPRPCFNG--VSAAQRLP----LPSNTPTRSLSLISVPRDVTESTVRRDLEVYGDVRG 134
Query: 258 LRETPLKKHQRFIEFYDVRDAAKALKEMNGQEI 290
++ + + + FYD+RDA +A++E+ G+ +
Sbjct: 135 VQMERISEGIVTVHFYDIRDAKRAVREVCGRHM 167
Score = 58 (25.5 bits), Expect = 1.3e-43, Sum P(2) = 1.3e-43
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 52 QVVPFG----GVGYAQYPTHPQLGVPLPPPSTG--PTRTLVLSY 89
+ +PF G + P PQL PLPP S G PT V ++
Sbjct: 19 EFIPFNPISSGFHFPYTPPPPQLPPPLPPSSYGLSPTEPRVFTF 62
>TAIR|locus:2008530 [details] [associations]
symbol:TEL2 "terminal EAR1-like 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR007201 Pfam:PF04059
EMBL:AC008113 HSSP:P09012 EMBL:DQ446408 IPI:IPI00539717
RefSeq:NP_176943.1 UniGene:At.52426 ProteinModelPortal:Q9FXE0
SMR:Q9FXE0 PRIDE:Q9FXE0 EnsemblPlants:AT1G67770.1 GeneID:843102
KEGG:ath:AT1G67770 TAIR:At1g67770 eggNOG:NOG320075
HOGENOM:HOG000090865 InParanoid:Q9FXE0 OMA:NEIRYRH PhylomeDB:Q9FXE0
ProtClustDB:CLSN2914477 Genevestigator:Q9FXE0 Uniprot:Q9FXE0
Length = 527
Score = 380 (138.8 bits), Expect = 2.6e-59, Sum P(2) = 2.6e-59
Identities = 70/110 (63%), Positives = 90/110 (81%)
Query: 201 ARGLVAGRPVWAQFIVPTCNAVPDGNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRE 260
ARGLV+G +WA F+ P NAVP+GNNQG++V+ NL+ VSSSTL+ IFQ +G VK++RE
Sbjct: 155 ARGLVSGHSLWAHFVFPQLNAVPEGNNQGSLVIMNLEPTVSSSTLRHIFQVYGEVKQVRE 214
Query: 261 TPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGGHSKKFF 310
TP K+ QRF+EF+DVRDAAKAL+ MNG+ I GK +VI+FSRPGG +KK F
Sbjct: 215 TPCKREQRFVEFFDVRDAAKALRVMNGKVISGKPMVIQFSRPGGLTKKLF 264
Score = 246 (91.7 bits), Expect = 2.6e-59, Sum P(2) = 2.6e-59
Identities = 67/167 (40%), Positives = 85/167 (50%)
Query: 1 MGETGISRFQGNLDPRAQEFRPTTLFR----PPQVYYPYGAASPPTLPPYPSNDVQVVPF 56
M TG NL+P A F P P + + PP PP P +
Sbjct: 1 MSVTGPFSHPTNLNPTAPAFFPAINQHQNQNPSLIPTRFFLPHPPPPPPPPPPPLYF--- 57
Query: 57 GGVGYAQYPTHPQLGVP-LPPPSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQME 115
Y P P P LPP S PTR ++L VP V+ET +RRD+E+FGEVRGVQME
Sbjct: 58 ---SYFSLPPPPP--PPHLPPTSVTPTRAVMLLQVPATVTETSLRRDMELFGEVRGVQME 112
Query: 116 RLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPYSSGLM 162
R EGIV HFY+L +++ AF EIR +HMQ Q+Q + GL+
Sbjct: 113 RAHEGIVIFHFYNLINSQRAFNEIRYRHMQQQEQQQHFHFTTARGLV 159
Score = 37 (18.1 bits), Expect = 9.2e-19, Sum P(2) = 9.2e-19
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 368 KGNPNNVNVTCSIEPSVASLSLANAIE 394
+GN V ++EP+V+S +L + +
Sbjct: 178 EGNNQGSLVIMNLEPTVSSSTLRHIFQ 204
>TAIR|locus:2013583 [details] [associations]
symbol:ML5 "MEI2-like protein 5" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0045836 "positive regulation of meiosis"
evidence=IMP] [GO:0045927 "positive regulation of growth"
evidence=IMP] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0016558 "protein import into peroxisome matrix" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0007126 GO:GO:0045927
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG262869
HOGENOM:HOG000030212 GO:GO:0045836 InterPro:IPR007201 Pfam:PF04059
EMBL:AC068667 EMBL:AY062613 EMBL:AY070368 EMBL:AY091327
EMBL:AK230306 IPI:IPI00540335 PIR:F86416 RefSeq:NP_174233.2
RefSeq:NP_849727.1 UniGene:At.27439 HSSP:P19339
ProteinModelPortal:Q8VWF5 SMR:Q8VWF5 PaxDb:Q8VWF5 PRIDE:Q8VWF5
EnsemblPlants:AT1G29400.1 EnsemblPlants:AT1G29400.2 GeneID:839816
KEGG:ath:AT1G29400 TAIR:At1g29400 InParanoid:Q8VWF5 OMA:SPMANSP
PhylomeDB:Q8VWF5 ProtClustDB:CLSN2680301 Genevestigator:Q8VWF5
Uniprot:Q8VWF5
Length = 800
Score = 245 (91.3 bits), Expect = 6.9e-23, Sum P(2) = 6.9e-23
Identities = 49/91 (53%), Positives = 61/91 (67%)
Query: 214 FIVPTCNAVPDGNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFY 273
F +P N NQGT+VVFNLD +S+ L IF A G +KE+RETP K+H +F+EFY
Sbjct: 238 FSIPKDNPSEKDMNQGTLVVFNLDPSISNDDLHGIFGAHGEIKEIRETPHKRHHKFVEFY 297
Query: 274 DVRDAAKALKEMNGQEIYGKHVVIEFSRPGG 304
DVR A ALK +N EI GK + +E SRPGG
Sbjct: 298 DVRGAEAALKALNRCEIAGKRIKVEPSRPGG 328
Score = 85 (35.0 bits), Expect = 6.9e-23, Sum P(2) = 6.9e-23
Identities = 17/70 (24%), Positives = 37/70 (52%)
Query: 76 PPSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMA 135
P P+RTL + + +V ++ + E +G++R + G V + +YD+R A MA
Sbjct: 161 PYGEHPSRTLFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMA 220
Query: 136 FKEIREQHMQ 145
+ ++ + ++
Sbjct: 221 MRSLQNKPLR 230
>TAIR|locus:2045605 [details] [associations]
symbol:ML2 "MEI2-like 2" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0045836 "positive regulation of meiosis" evidence=IMP]
[GO:0045927 "positive regulation of growth" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007126 GO:GO:0045927 EMBL:CP002685
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 HOGENOM:HOG000030212
GO:GO:0045836 InterPro:IPR007201 Pfam:PF04059 EMBL:AF101056
EMBL:AC006580 EMBL:AC006931 EMBL:AF367316 EMBL:AY143940
IPI:IPI00546291 PIR:E84859 RefSeq:NP_565990.1 UniGene:At.25505
ProteinModelPortal:Q9SJG8 SMR:Q9SJG8 STRING:Q9SJG8 PaxDb:Q9SJG8
PRIDE:Q9SJG8 EnsemblPlants:AT2G42890.1 GeneID:818890
KEGG:ath:AT2G42890 TAIR:At2g42890 eggNOG:NOG266727
InParanoid:Q9ASS1 OMA:DANDHEQ PhylomeDB:Q9SJG8
ProtClustDB:CLSN2688901 Genevestigator:Q9SJG8 Uniprot:Q9SJG8
Length = 843
Score = 243 (90.6 bits), Expect = 2.0e-22, Sum P(2) = 2.0e-22
Identities = 48/101 (47%), Positives = 68/101 (67%)
Query: 204 LVAGRPVWAQFIVPTCNAVPDGNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPL 263
L+ R + F +P N NQGT+V+FN+D+ VS+ L ++F A+G ++E+RETP
Sbjct: 258 LLRKRTLDIHFSIPKENPSEKDMNQGTLVIFNVDTTVSNDELLQLFGAYGEIREIRETPN 317
Query: 264 KKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGG 304
++ RFIE+YDVRDA ALK +N EI GK + +E SRPGG
Sbjct: 318 RRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLELSRPGG 358
Score = 84 (34.6 bits), Expect = 2.0e-22, Sum P(2) = 2.0e-22
Identities = 18/65 (27%), Positives = 32/65 (49%)
Query: 76 PPSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMA 135
P P+RTL + + V ++ + E FGE+R + G V + +YD+R A A
Sbjct: 191 PNGEHPSRTLFVRNINSSVEDSELSALFEPFGEIRSLYTACKSRGFVMISYYDIRAAHAA 250
Query: 136 FKEIR 140
+ ++
Sbjct: 251 MRALQ 255
>TAIR|locus:2117706 [details] [associations]
symbol:ML3 "MEI2-like 3" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] [GO:0009507 "chloroplast" evidence=ISM] [GO:0005634
"nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0000956 "nuclear-transcribed mRNA
catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0007126 GO:GO:0045927 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AL110123 GO:GO:0003723
GO:GO:0045836 InterPro:IPR007201 Pfam:PF04059 EMBL:AL161548
EMBL:AK319074 IPI:IPI00542028 IPI:IPI01019349 PIR:T14812
RefSeq:NP_001119005.4 RefSeq:NP_193546.7 UniGene:At.32943
UniGene:At.70995 ProteinModelPortal:Q9SVV9 SMR:Q9SVV9 STRING:Q9SVV9
PaxDb:Q9SVV9 PRIDE:Q9SVV9 GeneID:827537 KEGG:ath:AT4G18120
TAIR:At4g18120 eggNOG:NOG286559 InParanoid:Q9SVV9
Genevestigator:Q9SVV9 Uniprot:Q9SVV9
Length = 759
Score = 242 (90.2 bits), Expect = 1.4e-20, Sum P(2) = 1.4e-20
Identities = 49/101 (48%), Positives = 65/101 (64%)
Query: 204 LVAGRPVWAQFIVPTCNAVPDGNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPL 263
L+ R + F +P N NQGT+VVFNL VS+ L+ IF +G +KE+RETP
Sbjct: 226 LLKKRKLDIHFSIPKDNPSEKDVNQGTLVVFNLAPSVSNRDLENIFGVYGEIKEIRETPN 285
Query: 264 KKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGG 304
K+H +F+EF+DVR A ALK +N EI GK + +E SRPGG
Sbjct: 286 KRHHKFVEFFDVRSADAALKALNRTEIAGKRIKLEHSRPGG 326
Score = 66 (28.3 bits), Expect = 1.4e-20, Sum P(2) = 1.4e-20
Identities = 15/65 (23%), Positives = 32/65 (49%)
Query: 76 PPSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMA 135
P P+RTL + + +V ++ ++ E +G +R + G V V + D+R + A
Sbjct: 159 PYGEHPSRTLFVRNINSNVEDSELQALFEQYGHIRTLYTACKQRGFVMVSYNDIRASRAA 218
Query: 136 FKEIR 140
+ ++
Sbjct: 219 MRALQ 223
>TAIR|locus:2156166 [details] [associations]
symbol:ML1 "MEI2-like protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048507 "meristem development" evidence=IGI] [GO:0045836
"positive regulation of meiosis" evidence=IGI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0007126 EMBL:CP002688 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 EMBL:D86122
EMBL:AB022212 EMBL:AY062536 EMBL:BT008806 EMBL:AK316683
IPI:IPI00533512 RefSeq:NP_001032122.1 RefSeq:NP_568946.1
UniGene:At.340 ProteinModelPortal:Q8W4I9 SMR:Q8W4I9 IntAct:Q8W4I9
PaxDb:Q8W4I9 PRIDE:Q8W4I9 EnsemblPlants:AT5G61960.1
EnsemblPlants:AT5G61960.2 GeneID:836317 KEGG:ath:AT5G61960
TAIR:At5g61960 eggNOG:NOG262869 HOGENOM:HOG000030212
InParanoid:Q8W4I9 OMA:HEDIHIT PhylomeDB:Q8W4I9
ProtClustDB:CLSN2687061 Genevestigator:Q8W4I9 GO:GO:0048507
GO:GO:0045836 InterPro:IPR007201 Pfam:PF04059 Uniprot:Q8W4I9
Length = 915
Score = 162 (62.1 bits), Expect = 4.8e-11, Sum P(2) = 4.8e-11
Identities = 46/190 (24%), Positives = 81/190 (42%)
Query: 204 LVAGRPVWAQFIVPTCNAVPDGNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPL 263
L+ G + ++ + N ++G ++V NLDS +S+ L + +++G VKE+R T
Sbjct: 277 LLRGTKLDIRYSISKENPSQKDTSKGALLVNNLDSSISNQELNRLVKSYGEVKEIRRTMH 336
Query: 264 KKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGGHSKKFFXXXXXXXXXXXXX 323
Q +IEF+DVR AA AL +NG E+ GK + + + P G ++
Sbjct: 337 DNSQIYIEFFDVRAAAAALGGLNGLEVAGKKLQLVPTYPEG--TRYTSQCAANDTEGCLP 394
Query: 324 XTIYQTRNXXXXXXXXXXXXXXXXXRSFASQAPHFRKKSPSNSFKGNPNNVNVTCSIEPS 383
T Y + + + H SP NSF ++++ PS
Sbjct: 395 KTSYSNTSSGHIGRHFPGMISSTSSDGGSMRVIHNSIGSPVNSFIERHRSLSIPIGFPPS 454
Query: 384 VASLSLANAI 393
+S + +
Sbjct: 455 ANGISASKPV 464
Score = 69 (29.3 bits), Expect = 4.8e-11, Sum P(2) = 4.8e-11
Identities = 14/62 (22%), Positives = 34/62 (54%)
Query: 81 PTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIR 140
P+RTL++ + +V + ++ E FG+++ + G + V + D+R A+ A + ++
Sbjct: 215 PSRTLLVGNISSNVEDYELKVLFEQFGDIQALHTACKNRGFIMVSYCDIRAAQNAARALQ 274
Query: 141 EQ 142
+
Sbjct: 275 NK 276
>TAIR|locus:2182885 [details] [associations]
symbol:ML4 "MEI2-like 4" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0045836 "positive regulation of meiosis" evidence=IMP]
[GO:0045927 "positive regulation of growth" evidence=IMP]
[GO:0048507 "meristem development" evidence=IGI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0007126 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0045927
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AL163652 GO:GO:0003723
eggNOG:NOG262869 HOGENOM:HOG000030212 ProtClustDB:CLSN2687061
GO:GO:0048507 GO:GO:0045836 InterPro:IPR007201 Pfam:PF04059
EMBL:AK226960 IPI:IPI00536095 PIR:T48500 RefSeq:NP_196346.1
UniGene:At.5054 ProteinModelPortal:Q9LYN7 SMR:Q9LYN7 PaxDb:Q9LYN7
PRIDE:Q9LYN7 EnsemblPlants:AT5G07290.1 GeneID:830620
KEGG:ath:AT5G07290 TAIR:At5g07290 InParanoid:Q9LYN7 OMA:HEDIRIT
PhylomeDB:Q9LYN7 Genevestigator:Q9LYN7 Uniprot:Q9LYN7
Length = 907
Score = 169 (64.5 bits), Expect = 8.2e-11, Sum P(2) = 8.2e-11
Identities = 47/190 (24%), Positives = 86/190 (45%)
Query: 204 LVAGRPVWAQFIVPTCNAVPDGNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPL 263
L+ GR + ++ +P N + +++G + V NLDS +S+ L IF ++G ++E+R T
Sbjct: 271 LLRGRKLDIRYSIPKENP-KENSSEGALWVNNLDSSISNEELHGIFSSYGEIREVRRTMH 329
Query: 264 KKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGGHSKKFFXXXXXXXXXXXXX 323
+ Q +IEF+DVR A AL+ +NG E+ G+ + + + P G S F+
Sbjct: 330 ENSQVYIEFFDVRKAKVALQGLNGLEVAGRQLKLAPTCPEGTS--FWPQFASDDGEGGLP 387
Query: 324 XTIYQTRNXXXXXXXXXXXXXXXXXRSFASQAPHFRKKSPSNSFKGNPNNVNVTCSIEPS 383
+ + + + H SP NSF +++V + PS
Sbjct: 388 KMAFNNLSSAHMGRHFPGILASTSIDGGSIRGMHNSVGSPMNSFIERHQSLDVPIGLPPS 447
Query: 384 VASLSLANAI 393
+S + +
Sbjct: 448 ARVISASKPV 457
Score = 59 (25.8 bits), Expect = 8.2e-11, Sum P(2) = 8.2e-11
Identities = 14/58 (24%), Positives = 28/58 (48%)
Query: 82 TRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEI 139
+R L + V + + + + FG+VR + G + V +YD+R A+ A + +
Sbjct: 210 SRILFVRNVDSSIEDCELGVLFKQFGDVRALHTAGKNRGFIMVSYYDIRAAQKAARAL 267
>UNIPROTKB|E7ETC0 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI01012546 ProteinModelPortal:E7ETC0 SMR:E7ETC0
Ensembl:ENST00000497671 ArrayExpress:E7ETC0 Bgee:E7ETC0
Uniprot:E7ETC0
Length = 135
Score = 121 (47.7 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 31/88 (35%), Positives = 45/88 (51%)
Query: 224 DGNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR---ETPLKKHQRFIEFYDVRDAAK 280
DG + T+ V NL V+ + ++F GP K + E F+EFY+ RDAA
Sbjct: 5 DGQPR-TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAA 63
Query: 281 ALKEMNGQEIYGKHVVIEFSRPGGHSKK 308
AL MNG++I GK V + ++ KK
Sbjct: 64 ALAAMNGRKILGKEVKVNWATTPSSQKK 91
>DICTYBASE|DDB_G0279255 [details] [associations]
symbol:DDB_G0279255 species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 SMART:SM00360 dictyBase:DDB_G0279255
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR007201
Pfam:PF04059 EMBL:AAFI02000030 RefSeq:XP_641754.1
ProteinModelPortal:Q54X23 EnsemblProtists:DDB0205680 GeneID:8621952
KEGG:ddi:DDB_G0279255 InParanoid:Q54X23 ProtClustDB:CLSZ2846744
Uniprot:Q54X23
Length = 1698
Score = 122 (48.0 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 29/97 (29%), Positives = 52/97 (53%)
Query: 212 AQFIVPTCNAVPDGNNQGTIVV-FNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFI 270
++ IV C ++GT++ F+ D + + + F FG +K++R++P K Q+F+
Sbjct: 978 SKLIVNYCFDKDQTVDKGTLIATFSNDDQIKN--IVNDFSKFGEIKDIRDSPNKPLQKFV 1035
Query: 271 EFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGGHSK 307
EFY++ KA+ +N +I + FS GG SK
Sbjct: 1036 EFYNINSTLKAINNLNSDKIK-----VAFSHHGGSSK 1067
Score = 72 (30.4 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 15/66 (22%), Positives = 34/66 (51%)
Query: 77 PSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQME-RLMEGIVTVHFYDLRHAEMA 135
P P+R L + + G ++ + + +E G++ V + G + + + D+RH+ A
Sbjct: 909 PKESPSRYLFIKSIRG-INHNLFKSKIESIGQINSVYGSIKNKGGFLIISYLDIRHSIEA 967
Query: 136 FKEIRE 141
F E+++
Sbjct: 968 FNELQK 973
>GENEDB_PFALCIPARUM|PF13_0122 [details] [associations]
symbol:PF13_0122 "cyclophilin, putative"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
Uniprot:C0H5C7
Length = 125
Score = 114 (45.2 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 27/84 (32%), Positives = 46/84 (54%)
Query: 224 DGNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPL----KKHQ--RFIEFYDVRD 277
D N + V +D + +L +IF +FG ++ + E PL KK++ F+E+ +V D
Sbjct: 3 DNNATDILFVGGIDETIDEKSLYDIFSSFGDIRNI-EVPLNMTTKKNRGFAFVEYVEVDD 61
Query: 278 AAKALKEMNGQEIYGKHVVIEFSR 301
A AL MN E+ GK + + +S+
Sbjct: 62 AKHALYNMNNFELNGKRIHVNYSK 85
>UNIPROTKB|C0H5C7 [details] [associations]
symbol:PF13_0122 "RRM containing cyclophilin" species:36329
"Plasmodium falciparum 3D7" [GO:0000413 "protein peptidyl-prolyl
isomerization" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
Uniprot:C0H5C7
Length = 125
Score = 114 (45.2 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 27/84 (32%), Positives = 46/84 (54%)
Query: 224 DGNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPL----KKHQ--RFIEFYDVRD 277
D N + V +D + +L +IF +FG ++ + E PL KK++ F+E+ +V D
Sbjct: 3 DNNATDILFVGGIDETIDEKSLYDIFSSFGDIRNI-EVPLNMTTKKNRGFAFVEYVEVDD 61
Query: 278 AAKALKEMNGQEIYGKHVVIEFSR 301
A AL MN E+ GK + + +S+
Sbjct: 62 AKHALYNMNNFELNGKRIHVNYSK 85
>UNIPROTKB|E5RGV5 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00974016
ProteinModelPortal:E5RGV5 SMR:E5RGV5 Ensembl:ENST00000474809
ArrayExpress:E5RGV5 Bgee:E5RGV5 Uniprot:E5RGV5
Length = 144
Score = 112 (44.5 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 27/82 (32%), Positives = 43/82 (52%)
Query: 230 TIVVFNLDSGVSSSTLKEIFQAFGPVKELR---ETPLKKHQRFIEFYDVRDAAKALKEMN 286
T+ V NL V+ + + ++F GP K + +T F+EF++ R AA AL MN
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMN 67
Query: 287 GQEIYGKHVVIEFSRPGGHSKK 308
G++I GK V + ++ KK
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKK 89
>POMBASE|SPBC4B4.07c [details] [associations]
symbol:usp102 "U1 snRNP-associated protein Usp102"
species:4896 "Schizosaccharomyces pombe" [GO:0000395 "mRNA
5'-splice site recognition" evidence=IC] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005685 "U1 snRNP"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0017069
"snRNA binding" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC4B4.07c GO:GO:0005730 GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GenomeReviews:CU329671_GR GO:GO:0005681
GO:GO:0003723 GO:GO:0017069 GO:GO:0005685 GO:GO:0000395
eggNOG:NOG317159 PANTHER:PTHR10501 HSSP:P08579 HOGENOM:HOG000217519
PIR:T40479 RefSeq:NP_596424.1 ProteinModelPortal:O74968
STRING:O74968 EnsemblFungi:SPBC4B4.07c.1 GeneID:2540865
KEGG:spo:SPBC4B4.07c OMA:SFVEFEN OrthoDB:EOG4TB7MX NextBio:20801981
Uniprot:O74968
Length = 249
Score = 129 (50.5 bits), Expect = 6.8e-06, P = 6.8e-06
Identities = 60/248 (24%), Positives = 109/248 (43%)
Query: 63 QYPTHPQLGVPLPPP--STGPTRTLVLSYVPGDVSETIVRRDLE----VFGEVRGVQMER 116
Q +H ++ P P S P+ TL + + + T+++R LE +G+V VQ +
Sbjct: 4 QTNSHQEVQQPSPKETDSQTPSETLYIRNIEEKIRLTMLKRILEHLFGSYGKVIDVQARK 63
Query: 117 L--MEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPYSSGLMLMXXXXXXXXLA 174
M G V F +L +A A K++ Q L + ++ S +++ +
Sbjct: 64 TLRMRGQAFVVFDNLENASRALKDL--QGYPLYGKPMMIQYSKSKSDIIVQRESPEE-IE 120
Query: 175 TGCYDNQVVAESLMIMNSYAPVLPPPA-RGLVAGRPVWAQFIVPTCNAVPDGNNQGTIVV 233
T D + E L ++ P P P + V R V A+ T N N+ +++
Sbjct: 121 TRKKDRKNRREMLKRTSALQPAAPKPTHKKPVPKRNVGAER-KSTINEDLLPPNK-VLLL 178
Query: 234 FNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGK 293
N+ V++ L +IF+AF +E+R P ++ F+E+ R+A A G + G
Sbjct: 179 QNIPQEVNADVLTQIFEAFSGFQEVRMVPGRRGIAFVEYDSDREATVAKNGTTGMSLSGN 238
Query: 294 HVVIEFSR 301
+ + F+R
Sbjct: 239 QIKVTFAR 246
>UNIPROTKB|J9PA38 [details] [associations]
symbol:SRSF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 KO:K12893 CTD:6431 EMBL:AAEX03013949
GeneID:403667 KEGG:cfa:403667 RefSeq:XP_003639909.1
Ensembl:ENSCAFT00000044157 Uniprot:J9PA38
Length = 135
Score = 109 (43.4 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 24/71 (33%), Positives = 38/71 (53%)
Query: 231 IVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEI 290
+ + L V ++ F +G L E LK F+EF D RDA A+ E+NG+E+
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYG---RLLEIDLKNGYGFVEFEDSRDADDAVYELNGKEL 60
Query: 291 YGKHVVIEFSR 301
G+ V++E +R
Sbjct: 61 CGERVIVEHAR 71
>WB|WBGene00004698 [details] [associations]
symbol:rsp-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040011
"locomotion" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0008406 "gonad development" evidence=IMP] [GO:0040026 "positive
regulation of vulval development" evidence=IMP] [GO:0009790 "embryo
development" evidence=IMP] [GO:0001703 "gastrulation with mouth
forming first" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0002119 "nematode
larval development" evidence=IMP] [GO:0007283 "spermatogenesis"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0040010 GO:GO:0030154 GO:GO:0008406 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0007283
GO:GO:0003723 GO:GO:0000398 GO:GO:0040026 eggNOG:COG0724
GO:GO:0001703 EMBL:Z66521 PIR:T26085 RefSeq:NP_496442.1
RefSeq:NP_871913.1 RefSeq:NP_871914.1 ProteinModelPortal:Q23121
SMR:Q23121 STRING:Q23121 PaxDb:Q23121 PRIDE:Q23121
EnsemblMetazoa:W02B12.3a.1 EnsemblMetazoa:W02B12.3a.2 GeneID:174748
KEGG:cel:CELE_W02B12.3 UCSC:W02B12.3a CTD:174748 WormBase:W02B12.3a
WormBase:W02B12.3b WormBase:W02B12.3c GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 InParanoid:Q23121 KO:K12893 OMA:GYGQIRD
NextBio:885324 Uniprot:Q23121
Length = 312
Score = 128 (50.1 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 26/74 (35%), Positives = 46/74 (62%)
Query: 231 IVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEI 290
I + L S VS ++ F+ +G ++R+ LK F+EF D RDA A+ ++NG+E+
Sbjct: 5 IYIGRLTSRVSEKDIEHFFRGYG---QIRDVLLKNGFGFVEFDDKRDAEDAVHDLNGKEL 61
Query: 291 YGKHVVIEFSRPGG 304
G+ V++++S+P G
Sbjct: 62 GGERVILDYSKPRG 75
>UNIPROTKB|Q23121 [details] [associations]
symbol:rsp-1 "Probable splicing factor,
arginine/serine-rich 1" species:6239 "Caenorhabditis elegans"
[GO:0007275 "multicellular organismal development" evidence=IGI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008380 "RNA splicing"
evidence=NAS] [GO:0003723 "RNA binding" evidence=NAS] [GO:0040009
"regulation of growth rate" evidence=IGI] [GO:0007283
"spermatogenesis" evidence=IGI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0009792 GO:GO:0040010 GO:GO:0030154
GO:GO:0008406 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0007283 GO:GO:0003723 GO:GO:0000398
GO:GO:0040026 eggNOG:COG0724 GO:GO:0001703 EMBL:Z66521 PIR:T26085
RefSeq:NP_496442.1 RefSeq:NP_871913.1 RefSeq:NP_871914.1
ProteinModelPortal:Q23121 SMR:Q23121 STRING:Q23121 PaxDb:Q23121
PRIDE:Q23121 EnsemblMetazoa:W02B12.3a.1 EnsemblMetazoa:W02B12.3a.2
GeneID:174748 KEGG:cel:CELE_W02B12.3 UCSC:W02B12.3a CTD:174748
WormBase:W02B12.3a WormBase:W02B12.3b WormBase:W02B12.3c
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 InParanoid:Q23121
KO:K12893 OMA:GYGQIRD NextBio:885324 Uniprot:Q23121
Length = 312
Score = 128 (50.1 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 26/74 (35%), Positives = 46/74 (62%)
Query: 231 IVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEI 290
I + L S VS ++ F+ +G ++R+ LK F+EF D RDA A+ ++NG+E+
Sbjct: 5 IYIGRLTSRVSEKDIEHFFRGYG---QIRDVLLKNGFGFVEFDDKRDAEDAVHDLNGKEL 61
Query: 291 YGKHVVIEFSRPGG 304
G+ V++++S+P G
Sbjct: 62 GGERVILDYSKPRG 75
>DICTYBASE|DDB_G0276005 [details] [associations]
symbol:DDB_G0276005 species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 SMART:SM00360 dictyBase:DDB_G0276005
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000013
RefSeq:XP_643375.1 ProteinModelPortal:Q552K7
EnsemblProtists:DDB0217746 GeneID:8620259 KEGG:ddi:DDB_G0276005
eggNOG:NOG269978 InParanoid:Q552K7 OMA:NNMNHPN
ProtClustDB:CLSZ2846869 Uniprot:Q552K7
Length = 1984
Score = 145 (56.1 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 35/89 (39%), Positives = 52/89 (58%)
Query: 224 DGNNQGTIVVFNLDS--GVSSST--LKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAA 279
D + GT+V+FN D+ +S+T L FG ++E+RE LK +FIEFYD+RDA
Sbjct: 1508 DPIDHGTLVLFNFDAVFSTNSNTHMLTSALNQFGQIREIRED-LKNKLKFIEFYDIRDAI 1566
Query: 280 KALKEMNGQEIYGKHVVIEFSRPGGHSKK 308
A+ + Q +GK +++ S HSKK
Sbjct: 1567 AAVNALKKQVFFGKKLLVRLSVLD-HSKK 1594
Score = 40 (19.1 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 355 APHFRKKSPSNSFKGNPNN 373
+PH K S SF+G ++
Sbjct: 1757 SPHVSKSGSSGSFEGTDDS 1775
>ZFIN|ZDB-GENE-030131-4862 [details] [associations]
symbol:syncrip "synaptotagmin binding, cytoplasmic
RNA interacting protein" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-4862 GO:GO:0000166 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
GO:GO:0003676 EMBL:CT573058 IPI:IPI00504625
Ensembl:ENSDART00000129870 Bgee:F1QY96 Uniprot:F1QY96
Length = 694
Score = 131 (51.2 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 37/114 (32%), Positives = 63/114 (55%)
Query: 202 RGLVAGR-PVWAQFI-VPTCNAV--PDGNNQGTI-VVF--NLDSGVSSSTLKEIFQAFGP 254
R L++G+ VW + V + + PD + V+F NL + V+ L++ F FG
Sbjct: 368 RRLMSGKVKVWGNLVTVEWADPIEDPDPEVMAKVKVLFVRNLANSVTEEILEKAFGQFGN 427
Query: 255 VKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGGHSKK 308
++ +++ LK + F+ F D A KAL EMNG+E+ G+H+ I F++P +K
Sbjct: 428 LERVKK--LKDYA-FVHFNDRDGAVKALTEMNGKELEGEHIEIVFAKPPDQKRK 478
>GENEDB_PFALCIPARUM|PFE0160c [details] [associations]
symbol:PFE0160c "Ser/Arg-rich splicing factor,
putative" species:5833 "Plasmodium falciparum" [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676 EMBL:AL844504
HSSP:Q61474 RefSeq:XP_001351591.1 ProteinModelPortal:Q8I468
IntAct:Q8I468 MINT:MINT-1654287 PRIDE:Q8I468
EnsemblProtists:PFE0160c:mRNA GeneID:812926 KEGG:pfa:PFE0160c
EuPathDB:PlasmoDB:PF3D7_0503300 HOGENOM:HOG000284061 OMA:ANTESTQ
ProtClustDB:CLSZ2848078 Uniprot:Q8I468
Length = 308
Score = 123 (48.4 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 30/84 (35%), Positives = 48/84 (57%)
Query: 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLK---KHQR---FIEFYDVRDAA 279
N ++++ L S S ++E F+ FG +K++ P+ K R F+EFYD +DA
Sbjct: 9 NQPMSLLIRKLKFDTSPSIVREKFKRFGAIKDVY-LPIDYYTKEPRGFGFVEFYDAKDAE 67
Query: 280 KALKEMNGQEIYGKHVVIEFSRPG 303
+ALKEMNG EI G + + ++ G
Sbjct: 68 QALKEMNGSEIDGSRIEVFVAQKG 91
>UNIPROTKB|Q8I468 [details] [associations]
symbol:PFE0160c "Ser/Arg-rich splicing factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005681 "spliceosomal
complex" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 EMBL:AL844504 HSSP:Q61474
RefSeq:XP_001351591.1 ProteinModelPortal:Q8I468 IntAct:Q8I468
MINT:MINT-1654287 PRIDE:Q8I468 EnsemblProtists:PFE0160c:mRNA
GeneID:812926 KEGG:pfa:PFE0160c EuPathDB:PlasmoDB:PF3D7_0503300
HOGENOM:HOG000284061 OMA:ANTESTQ ProtClustDB:CLSZ2848078
Uniprot:Q8I468
Length = 308
Score = 123 (48.4 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 30/84 (35%), Positives = 48/84 (57%)
Query: 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLK---KHQR---FIEFYDVRDAA 279
N ++++ L S S ++E F+ FG +K++ P+ K R F+EFYD +DA
Sbjct: 9 NQPMSLLIRKLKFDTSPSIVREKFKRFGAIKDVY-LPIDYYTKEPRGFGFVEFYDAKDAE 67
Query: 280 KALKEMNGQEIYGKHVVIEFSRPG 303
+ALKEMNG EI G + + ++ G
Sbjct: 68 QALKEMNGSEIDGSRIEVFVAQKG 91
>UNIPROTKB|E5RG67 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00974428
ProteinModelPortal:E5RG67 SMR:E5RG67 Ensembl:ENST00000477044
ArrayExpress:E5RG67 Bgee:E5RG67 Uniprot:E5RG67
Length = 161
Score = 112 (44.5 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 27/82 (32%), Positives = 43/82 (52%)
Query: 230 TIVVFNLDSGVSSSTLKEIFQAFGPVKELR---ETPLKKHQRFIEFYDVRDAAKALKEMN 286
T+ V NL V+ + + ++F GP K + +T F+EF++ R AA AL MN
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMN 67
Query: 287 GQEIYGKHVVIEFSRPGGHSKK 308
G++I GK V + ++ KK
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKK 89
>ZFIN|ZDB-GENE-041219-1 [details] [associations]
symbol:srsf6b "serine/arginine-rich splicing factor
6b" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-041219-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 KO:K12893
EMBL:BC086820 IPI:IPI00502132 RefSeq:NP_001008732.1
UniGene:Dr.76948 ProteinModelPortal:Q5M9N3 STRING:Q5M9N3
PRIDE:Q5M9N3 GeneID:494133 KEGG:dre:494133 CTD:494133
InParanoid:Q5M9N3 NextBio:20865634 ArrayExpress:Q5M9N3 Bgee:Q5M9N3
Uniprot:Q5M9N3
Length = 355
Score = 122 (48.0 bits), Expect = 0.00010, P = 0.00010
Identities = 25/56 (44%), Positives = 37/56 (66%)
Query: 246 KEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSR 301
K+I + FG +L ET LK F+EF D RDA A+ E+NG+E+ G+ V++E +R
Sbjct: 16 KDIQRFFGGYGKLMETDLKNGYGFVEFEDTRDADDAVYELNGKELCGERVIVEHAR 71
>UNIPROTKB|J3KP15 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000358156
Uniprot:J3KP15
Length = 134
Score = 100 (40.3 bits), Expect = 0.00013, P = 0.00013
Identities = 25/86 (29%), Positives = 46/86 (53%)
Query: 223 PDGNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKEL---RETPLKKHQ--RFIEFYDVRD 277
PD ++ V NL S TL+ +F+ +G V ++ R+ K+ + F+ F+D RD
Sbjct: 8 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRD 67
Query: 278 AAKALKEMNGQEIYGKHVVIEFSRPG 303
A A+ M+G + G+ + ++ +R G
Sbjct: 68 AEDAMDAMDGAVLDGRELRVQMARYG 93
>UNIPROTKB|J3QL05 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000583836
Uniprot:J3QL05
Length = 130
Score = 100 (40.3 bits), Expect = 0.00013, P = 0.00013
Identities = 25/86 (29%), Positives = 46/86 (53%)
Query: 223 PDGNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKEL---RETPLKKHQ--RFIEFYDVRD 277
PD ++ V NL S TL+ +F+ +G V ++ R+ K+ + F+ F+D RD
Sbjct: 8 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRD 67
Query: 278 AAKALKEMNGQEIYGKHVVIEFSRPG 303
A A+ M+G + G+ + ++ +R G
Sbjct: 68 AEDAMDAMDGAVLDGRELRVQMARYG 93
>UNIPROTKB|G4MTV6 [details] [associations]
symbol:MGG_01579 "Pre-mRNA branch site protein p14"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K12833 RefSeq:XP_003714557.1
ProteinModelPortal:G4MTV6 SMR:G4MTV6 EnsemblFungi:MGG_01579T0
GeneID:2679525 KEGG:mgr:MGG_01579 Uniprot:G4MTV6
Length = 115
Score = 100 (40.3 bits), Expect = 0.00013, P = 0.00013
Identities = 23/82 (28%), Positives = 44/82 (53%)
Query: 223 PDGNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRE--TPLKKHQRFIEFYDVRDAAK 280
P+ N + V NL V+ L ++F FGP++++R+ K F+ + DV DA +
Sbjct: 9 PEVNR--ALFVKNLSYNVTPEELFDLFGKFGPIRQVRQGIASNTKGTAFVVYEDVMDAKQ 66
Query: 281 ALKEMNGQEIYGKHVVIEFSRP 302
A ++NG +++V+ + +P
Sbjct: 67 ACDKLNGFNFQNRYLVVLYHQP 88
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 121 (47.7 bits), Expect = 0.00014, P = 0.00014
Identities = 31/88 (35%), Positives = 45/88 (51%)
Query: 224 DGNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR---ETPLKKHQRFIEFYDVRDAAK 280
DG + T+ V NL V+ + ++F GP K + E F+EFY+ RDAA
Sbjct: 5 DGQPR-TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAA 63
Query: 281 ALKEMNGQEIYGKHVVIEFSRPGGHSKK 308
AL MNG++I GK V + ++ KK
Sbjct: 64 ALAAMNGRKILGKEVKVNWATTPSSQKK 91
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 121 (47.7 bits), Expect = 0.00015, P = 0.00015
Identities = 31/88 (35%), Positives = 45/88 (51%)
Query: 224 DGNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR---ETPLKKHQRFIEFYDVRDAAK 280
DG + T+ V NL V+ + ++F GP K + E F+EFY+ RDAA
Sbjct: 5 DGQPR-TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAA 63
Query: 281 ALKEMNGQEIYGKHVVIEFSRPGGHSKK 308
AL MNG++I GK V + ++ KK
Sbjct: 64 ALAAMNGRKILGKEVKVNWATTPSSQKK 91
>GENEDB_PFALCIPARUM|PF14_0057 [details] [associations]
symbol:PF14_0057 "RNA binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006396 EMBL:AE014187
HSSP:Q9V535 HOGENOM:HOG000183826 KO:K12876 OMA:NIHEEAT
RefSeq:XP_001348230.1 ProteinModelPortal:Q8IM34 SMR:Q8IM34
EnsemblProtists:PF14_0057:mRNA GeneID:811639 KEGG:pfa:PF14_0057
EuPathDB:PlasmoDB:PF3D7_1406000 ProtClustDB:CLSZ2446706
Uniprot:Q8IM34
Length = 107
Score = 99 (39.9 bits), Expect = 0.00017, P = 0.00017
Identities = 23/85 (27%), Positives = 45/85 (52%)
Query: 222 VPDGNNQGTIVVF-NLDSGVSSSTLKEIFQAFGPVKEL-----RETPLKKHQRFIEFYDV 275
VP + +G I++ N+ +KE+F+ FG +K L R T K F+E+ +
Sbjct: 15 VPAKSVEGWIIIITNIHGEARDDYIKEVFERFGQIKNLHLNIDRRTGFLKGYAFLEYENF 74
Query: 276 RDAAKALKEMNGQEIYGKHVVIEFS 300
DA +A+ EM+G + + + ++++
Sbjct: 75 VDAKRAIDEMDGTMLLNQEIHVDWA 99
>UNIPROTKB|Q8IM34 [details] [associations]
symbol:PF14_0057 "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006396 EMBL:AE014187
HSSP:Q9V535 HOGENOM:HOG000183826 KO:K12876 OMA:NIHEEAT
RefSeq:XP_001348230.1 ProteinModelPortal:Q8IM34 SMR:Q8IM34
EnsemblProtists:PF14_0057:mRNA GeneID:811639 KEGG:pfa:PF14_0057
EuPathDB:PlasmoDB:PF3D7_1406000 ProtClustDB:CLSZ2446706
Uniprot:Q8IM34
Length = 107
Score = 99 (39.9 bits), Expect = 0.00017, P = 0.00017
Identities = 23/85 (27%), Positives = 45/85 (52%)
Query: 222 VPDGNNQGTIVVF-NLDSGVSSSTLKEIFQAFGPVKEL-----RETPLKKHQRFIEFYDV 275
VP + +G I++ N+ +KE+F+ FG +K L R T K F+E+ +
Sbjct: 15 VPAKSVEGWIIIITNIHGEARDDYIKEVFERFGQIKNLHLNIDRRTGFLKGYAFLEYENF 74
Query: 276 RDAAKALKEMNGQEIYGKHVVIEFS 300
DA +A+ EM+G + + + ++++
Sbjct: 75 VDAKRAIDEMDGTMLLNQEIHVDWA 99
>DICTYBASE|DDB_G0268266 [details] [associations]
symbol:DDB_G0268266 "RNA recognition motif-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0030587
"sorocarp development" evidence=IMP] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0268266 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AAFI02000003 GO:GO:0003676 GO:GO:0030587
eggNOG:NOG321849 RefSeq:XP_647083.1 ProteinModelPortal:Q55GV1
EnsemblProtists:DDB0202068 GeneID:8615887 KEGG:ddi:DDB_G0268266
InParanoid:Q55GV1 OMA:FSIPKEE Uniprot:Q55GV1
Length = 689
Score = 102 (41.0 bits), Expect = 0.00020, Sum P(3) = 0.00020
Identities = 28/96 (29%), Positives = 51/96 (53%)
Query: 207 GRPVWAQFIVPTCNAVPDGNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKH 266
GR + F +P + + +N G I V N D V + ++ F ++G +K++ E +
Sbjct: 249 GRSIDIHFSIPKEESGLE-DNAGFIHVKNRD--VPLNEVRIFFSSYGDIKDVTE--FNRD 303
Query: 267 QRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRP 302
Q +EFYD+R KAL E NG ++ + + +++ P
Sbjct: 304 QVLVEFYDLRACEKALAEANGVKLGDQTLDLDYYTP 339
Score = 64 (27.6 bits), Expect = 0.00020, Sum P(3) = 0.00020
Identities = 18/58 (31%), Positives = 26/58 (44%)
Query: 83 RTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIR 140
RTL + V + E + GE++ GI + +YDLR AE A EI+
Sbjct: 186 RTLFVRNVAYSIKEVDIPAIFAKIGEIKKTFSLLESRGIAFISYYDLRDAERAKNEIQ 243
Score = 41 (19.5 bits), Expect = 0.00020, Sum P(3) = 0.00020
Identities = 15/56 (26%), Positives = 25/56 (44%)
Query: 356 PHFRKKSPSNSFKGNPNNVN---VTCSIEPSVASL--SLANAIEDININPARRTRN 406
P +R++ +N N NN N T S + S S + +N++ + N N N
Sbjct: 431 PDYRRRDDNNYNNSNSNNNNSRKYTDSGDKSYKSNQNNYSNSVNNYNNNNNNNNSN 486
Score = 39 (18.8 bits), Expect = 0.00031, Sum P(3) = 0.00031
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 362 SPSNSFKGNP-NNVNVTCSIEPS 383
+PSN+F N NN + S EPS
Sbjct: 629 NPSNNFNNNNYNNSFINYS-EPS 650
Score = 37 (18.1 bits), Expect = 0.00049, Sum P(3) = 0.00049
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 364 SNSFKGNPNNVNVTCSIEPSVASLSLANAIEDININPARRTRN 406
+NS N NN+N+ ++ ++ + N ++N N +N
Sbjct: 545 NNSNSNNMNNMNMNNNMNNNMNNNMNNNMNNNMNNNMNNMNKN 587
>POMBASE|SPAC27D7.03c [details] [associations]
symbol:mei2 "RNA-binding protein involved in meiosis
Mei2" species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA
binding" evidence=IDA] [GO:0004860 "protein kinase inhibitor
activity" evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0007127 "meiosis I" evidence=TAS] [GO:0033620
"Mei2 nuclear dot" evidence=IDA] [GO:0034064 "Tor2-Mei2-Ste11
complex" evidence=IDA] [GO:0045836 "positive regulation of meiosis"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPAC27D7.03c GO:GO:0005829
EMBL:CU329670 GO:GO:0006950 GenomeReviews:CU329670_GR GO:GO:0000166
GO:GO:0004860 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0007127
eggNOG:NOG262869 GO:GO:0045836 InterPro:IPR007201 Pfam:PF04059
EMBL:X07180 PIR:S00391 RefSeq:NP_594609.1 ProteinModelPortal:P08965
STRING:P08965 EnsemblFungi:SPAC27D7.03c.1 GeneID:2542080
KEGG:spo:SPAC27D7.03c OMA:IMETESP OrthoDB:EOG41ZJK1
NextBio:20803153 GermOnline:SPAC27D7.03c GO:GO:0033620
GO:GO:0034064 Uniprot:P08965
Length = 750
Score = 97 (39.2 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 26/71 (36%), Positives = 43/71 (60%)
Query: 226 NNQGTIVVFNLDSG--VSSSTLKEIFQAFGPVKELRETPLKKH---QRFIEFYDVRDAAK 280
+N+G +++ N+ G +S L+ I Q FGP+ ++ PL+ Q EFYD RDA+
Sbjct: 288 DNEGQLLL-NMQGGSVLSILQLQSILQTFGPLLIMK--PLRSQNVSQIICEFYDTRDASF 344
Query: 281 ALKEMNGQEIY 291
AL E++G+ I+
Sbjct: 345 ALDELDGRIIH 355
Score = 72 (30.4 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 103 LEVF---GEVRGVQMERLM-EGIVTVHFYDLRHAEMAFKEIREQ 142
LE+F G+V+G+ L +GI V F+D+R A A K +R Q
Sbjct: 212 LELFSKLGDVKGIDTSSLSTDGICIVAFFDIRQAIQAAKSLRSQ 255
>UNIPROTKB|H7BY49 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 Ensembl:ENST00000361692 Uniprot:H7BY49
Length = 152
Score = 106 (42.4 bits), Expect = 0.00023, P = 0.00023
Identities = 26/79 (32%), Positives = 41/79 (51%)
Query: 233 VFNLDSGVSSSTLKEIFQAFGPVKELR---ETPLKKHQRFIEFYDVRDAAKALKEMNGQE 289
V NL V+ + + ++F GP K + +T F+EF++ R AA AL MNG++
Sbjct: 3 VGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNGRK 62
Query: 290 IYGKHVVIEFSRPGGHSKK 308
I GK V + ++ KK
Sbjct: 63 IMGKEVKVNWATTPSSQKK 81
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 118 (46.6 bits), Expect = 0.00031, P = 0.00031
Identities = 28/82 (34%), Positives = 43/82 (52%)
Query: 230 TIVVFNLDSGVSSSTLKEIFQAFGPVKELR---ETPLKKHQRFIEFYDVRDAAKALKEMN 286
T+ V NL V+ + + ++F GP K + +T F+EFY+ R AA AL MN
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFYEHRHAASALAAMN 67
Query: 287 GQEIYGKHVVIEFSRPGGHSKK 308
G++I GK V + ++ KK
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKK 89
>UNIPROTKB|F1NWI9 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=IEA] [GO:0070937
"CRD-mediated mRNA stability complex" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0071204 "histone
pre-mRNA 3'end processing complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 OMA:GNMATEH
EMBL:AADN02002396 IPI:IPI00680994 Ensembl:ENSGALT00000031678
ArrayExpress:F1NWI9 Uniprot:F1NWI9
Length = 622
Score = 121 (47.7 bits), Expect = 0.00031, P = 0.00031
Identities = 37/115 (32%), Positives = 66/115 (57%)
Query: 202 RGLVAGR-PVWAQFI-VPTCNAV--PDGNNQGTI-VVF--NLDSGVSSSTLKEIFQAFGP 254
R L++G+ VW + V + + PD + V+F NL + V+ L++ F FG
Sbjct: 303 RRLMSGKVKVWGNVVTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGK 362
Query: 255 VKELRETPLKKHQRFIEFYDVRDAA-KALKEMNGQEIYGKHVVIEFSRPGGHSKK 308
++ +++ LK + FI F D RD A KA++EMNG+++ G+++ I F++P +K
Sbjct: 363 LERVKK--LKDYA-FIHF-DERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRK 413
>UNIPROTKB|G4MVL2 [details] [associations]
symbol:MGG_08898 "Differentiation regulator" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0043581 "mycelium development" evidence=IEP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0043581 EMBL:CM001232 InterPro:IPR018835 Pfam:PF10378
RefSeq:XP_003713928.1 ProteinModelPortal:G4MVL2
EnsemblFungi:MGG_08898T0 GeneID:2679884 KEGG:mgr:MGG_08898
Uniprot:G4MVL2
Length = 806
Score = 122 (48.0 bits), Expect = 0.00034, P = 0.00034
Identities = 62/253 (24%), Positives = 106/253 (41%)
Query: 59 VGYAQYPTHPQLGVPLPPPSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLM 118
VG+ + P+ V L +G +R + L +P +++E +R DL FG + +++ R
Sbjct: 274 VGWGK-PSQVPTSVALAVQQSGASRNVYLGSLPEEITEEELREDLGKFGPIDTIKIVR-E 331
Query: 119 EGIVTVHFYDLRHAEMAFKEI-REQHMQLQQQSYGLKNPYSSGLMLMXXXXXXXXLATGC 177
+ I VHF + +A A ++ +E Q ++ Y Y
Sbjct: 332 KSIAFVHFLSIANAIKAVSQLPQEAKWQAPRRVY-----YGKDRCAYVSKT--------- 377
Query: 178 YDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDG--NNQGTIVVFN 235
Q A+ L I SYA +L R L++ + Q + A G NN G ++
Sbjct: 378 -QQQNAAQYLGISPSYAHMLTGADRDLISSA-LAQQSVAAAAVATSAGGLNNLGNRTIY- 434
Query: 236 LDSGVSSSTLKEIFQAF--GPVKELRETPLKKHQRFIEFYDVRDAAK--ALKEMNGQEIY 291
L + +T++EI G + +R P KH F+ F D AA AL + G I+
Sbjct: 435 LGNIHPETTIEEICNVVRGGLLHHIRYIP-DKHICFVTFIDPTAAASFYALSNLQGLMIH 493
Query: 292 GKHVVIEFSRPGG 304
+ + I + + G
Sbjct: 494 NRRLKIGWGKHSG 506
>GENEDB_PFALCIPARUM|PFL1200c [details] [associations]
symbol:PFL1200c "hypothetical protein,
conserved" species:5833 "Plasmodium falciparum" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE014188
HSSP:P19339 HOGENOM:HOG000276232 KO:K12833 OMA:YQSTKAF
RefSeq:XP_001350646.1 ProteinModelPortal:Q8I5G8 SMR:Q8I5G8
PRIDE:Q8I5G8 EnsemblProtists:PFL1200c:mRNA GeneID:811292
KEGG:pfa:PFL1200c EuPathDB:PlasmoDB:PF3D7_1224900
ProtClustDB:CLSZ2433715 Uniprot:Q8I5G8
Length = 106
Score = 96 (38.9 bits), Expect = 0.00035, P = 0.00035
Identities = 23/80 (28%), Positives = 44/80 (55%)
Query: 231 IVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLK--KHQRFIEFYDVRDAAKALKEMNGQ 288
+ V NL +S+ L +IF +G V+++R+ + K F+ + D+ DA AL ++G
Sbjct: 16 LYVRNLPYKISADELYDIFGKYGTVRQIRKGNAEGTKGTSFVVYDDIYDAKNALDHLSGF 75
Query: 289 EIYGKHVVIEFSRPGGHSKK 308
+ G+++V+ + P KK
Sbjct: 76 NVAGRYLVVLYYDPVKAQKK 95
>UNIPROTKB|Q5ZLF9 [details] [associations]
symbol:SRSF5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 OrthoDB:EOG4RJG2V EMBL:AADN02003156
EMBL:AJ719775 IPI:IPI00651527 UniGene:Gga.4502 STRING:Q5ZLF9
Ensembl:ENSGALT00000032618 Uniprot:Q5ZLF9
Length = 123
Score = 96 (38.9 bits), Expect = 0.00035, P = 0.00035
Identities = 21/71 (29%), Positives = 39/71 (54%)
Query: 231 IVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEI 290
+ + L+ ++ F+ +G +R+ LK+ F+EF D RDA A+ E++G+E+
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYG---RIRDIDLKRGFGFVEFEDPRDADDAVYELDGKEL 62
Query: 291 YGKHVVIEFSR 301
+ V IE +R
Sbjct: 63 CSERVTIEHAR 73
>UNIPROTKB|B4DJK0 [details] [associations]
symbol:SRSF5 "Serine/arginine-rich-splicing factor 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 EMBL:AL157789
UniGene:Hs.632326 HGNC:HGNC:10787 ChiTaRS:SRSF5 EMBL:AL355837
EMBL:AK296113 IPI:IPI01025047 ProteinModelPortal:B4DJK0 SMR:B4DJK0
STRING:B4DJK0 Ensembl:ENST00000555349 ArrayExpress:B4DJK0
Bgee:B4DJK0 Uniprot:B4DJK0
Length = 124
Score = 96 (38.9 bits), Expect = 0.00035, P = 0.00035
Identities = 21/71 (29%), Positives = 39/71 (54%)
Query: 231 IVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEI 290
+ + L+ ++ F+ +G +R+ LK+ F+EF D RDA A+ E++G+E+
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYG---RIRDIDLKRGFGFVEFEDPRDADDAVYELDGKEL 62
Query: 291 YGKHVVIEFSR 301
+ V IE +R
Sbjct: 63 CSERVTIEHAR 73
>UNIPROTKB|B4E241 [details] [associations]
symbol:SFRS3 "Splicing factor, arginine/serine-rich 3,
isoform CRA_a" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CH471081 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:Z85986 OrthoDB:EOG4VDQ12
UniGene:Hs.405144 HGNC:HGNC:10785 ChiTaRS:SRSF3 EMBL:AK304097
IPI:IPI00843996 SMR:B4E241 STRING:B4E241 Ensembl:ENST00000339436
Ensembl:ENST00000477442 UCSC:uc011dtp.1 HOGENOM:HOG000208722
HOVERGEN:HBG104956 Uniprot:B4E241
Length = 124
Score = 96 (38.9 bits), Expect = 0.00035, P = 0.00035
Identities = 22/70 (31%), Positives = 39/70 (55%)
Query: 231 IVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEI 290
+ V NL + + + L+ F +GP++ + F+EF D RDAA A++E++G+ +
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTL 71
Query: 291 YGKHVVIEFS 300
G V +E S
Sbjct: 72 CGCRVRVELS 81
>UNIPROTKB|G3V5K8 [details] [associations]
symbol:SRSF5 "Serine/arginine-rich-splicing factor 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0051726 "regulation
of cell cycle" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0009611
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0051726 EMBL:AL157789 HGNC:HGNC:10787 ChiTaRS:SRSF5
EMBL:AL355837 ProteinModelPortal:G3V5K8 SMR:G3V5K8
Ensembl:ENST00000553548 ArrayExpress:G3V5K8 Bgee:G3V5K8
Uniprot:G3V5K8
Length = 99
Score = 96 (38.9 bits), Expect = 0.00035, P = 0.00035
Identities = 21/71 (29%), Positives = 39/71 (54%)
Query: 231 IVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEI 290
+ + L+ ++ F+ +G +R+ LK+ F+EF D RDA A+ E++G+E+
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYG---RIRDIDLKRGFGFVEFEDPRDADDAVYELDGKEL 62
Query: 291 YGKHVVIEFSR 301
+ V IE +R
Sbjct: 63 CSERVTIEHAR 73
>UNIPROTKB|Q8I5G8 [details] [associations]
symbol:PFL1200c "Splicing factor 3b subunit, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE014188
HSSP:P19339 HOGENOM:HOG000276232 KO:K12833 OMA:YQSTKAF
RefSeq:XP_001350646.1 ProteinModelPortal:Q8I5G8 SMR:Q8I5G8
PRIDE:Q8I5G8 EnsemblProtists:PFL1200c:mRNA GeneID:811292
KEGG:pfa:PFL1200c EuPathDB:PlasmoDB:PF3D7_1224900
ProtClustDB:CLSZ2433715 Uniprot:Q8I5G8
Length = 106
Score = 96 (38.9 bits), Expect = 0.00035, P = 0.00035
Identities = 23/80 (28%), Positives = 44/80 (55%)
Query: 231 IVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLK--KHQRFIEFYDVRDAAKALKEMNGQ 288
+ V NL +S+ L +IF +G V+++R+ + K F+ + D+ DA AL ++G
Sbjct: 16 LYVRNLPYKISADELYDIFGKYGTVRQIRKGNAEGTKGTSFVVYDDIYDAKNALDHLSGF 75
Query: 289 EIYGKHVVIEFSRPGGHSKK 308
+ G+++V+ + P KK
Sbjct: 76 NVAGRYLVVLYYDPVKAQKK 95
>TAIR|locus:2077137 [details] [associations]
symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
Genevestigator:Q9LZT1 Uniprot:Q9LZT1
Length = 102
Score = 96 (38.9 bits), Expect = 0.00035, P = 0.00035
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 231 IVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEM 285
+ V L + + +L+++F FG +KE R ET K FI F DA KALK +
Sbjct: 9 LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSL 68
Query: 286 NGQEIYGKHVVIEFSR 301
+G+ + G+ + +E ++
Sbjct: 69 DGKIVDGRLIFVEVAK 84
>TAIR|locus:2027372 [details] [associations]
symbol:RBP45B species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010193 "response to ozone" evidence=IEP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010193 EMBL:AC007296
HSSP:P19339 eggNOG:COG0724 GO:GO:0008143 HOGENOM:HOG000186228
EMBL:AY093201 EMBL:BT008494 EMBL:AK318868 EMBL:AY086969
IPI:IPI00523017 IPI:IPI00536746 PIR:H86249 RefSeq:NP_172630.1
RefSeq:NP_849641.1 UniGene:At.19842 ProteinModelPortal:Q9SAB3
SMR:Q9SAB3 IntAct:Q9SAB3 PRIDE:Q9SAB3 EnsemblPlants:AT1G11650.2
GeneID:837708 KEGG:ath:AT1G11650 TAIR:At1g11650 InParanoid:Q9SAB3
OMA:PQAHYGQ PhylomeDB:Q9SAB3 ProtClustDB:CLSN2682179
Genevestigator:Q9SAB3 Uniprot:Q9SAB3
Length = 405
Score = 99 (39.9 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 224 DGNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALK 283
D NN T+ V LD+ V+ LK +F +G + ++ P K F++F + A +AL+
Sbjct: 257 DPNNT-TVFVGGLDASVTDDHLKNVFSQYGEIVHVK-IPAGKRCGFVQFSEKSCAEEALR 314
Query: 284 EMNGQEIYGKHVVIEFSR 301
+NG ++ G V + + R
Sbjct: 315 MLNGVQLGGTTVRLSWGR 332
Score = 61 (26.5 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 11/34 (32%), Positives = 23/34 (67%)
Query: 28 PPQVYYPYGAASPPTLPPYPSNDVQVVPFGGVGY 61
PPQ++ P AA+PP++ P +++++ + G + Y
Sbjct: 39 PPQMWNPQ-AAAPPSVQPTTADEIRTLWIGDLQY 71
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 112 (44.5 bits), Expect = 0.00040, P = 0.00040
Identities = 27/82 (32%), Positives = 43/82 (52%)
Query: 230 TIVVFNLDSGVSSSTLKEIFQAFGPVKELR---ETPLKKHQRFIEFYDVRDAAKALKEMN 286
T+ V NL V+ + + ++F GP K + +T F+EF++ R AA AL MN
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMN 67
Query: 287 GQEIYGKHVVIEFSRPGGHSKK 308
G++I GK V + ++ KK
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKK 89
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 117 (46.2 bits), Expect = 0.00042, P = 0.00042
Identities = 28/82 (34%), Positives = 43/82 (52%)
Query: 230 TIVVFNLDSGVSSSTLKEIFQAFGPVKELR---ETPLKKHQRFIEFYDVRDAAKALKEMN 286
T+ V NL V+ + + ++F GP K + +T F+EFY+ R AA AL MN
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFYEHRHAAAALAAMN 67
Query: 287 GQEIYGKHVVIEFSRPGGHSKK 308
G++I GK V + ++ KK
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKK 89
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 117 (46.2 bits), Expect = 0.00043, P = 0.00043
Identities = 28/82 (34%), Positives = 43/82 (52%)
Query: 230 TIVVFNLDSGVSSSTLKEIFQAFGPVKELR---ETPLKKHQRFIEFYDVRDAAKALKEMN 286
T+ V NL V+ + + ++F GP K + +T F+EFY+ R AA AL MN
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFYEHRHAAAALAAMN 67
Query: 287 GQEIYGKHVVIEFSRPGGHSKK 308
G++I GK V + ++ KK
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKK 89
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 116 (45.9 bits), Expect = 0.00044, P = 0.00044
Identities = 29/88 (32%), Positives = 45/88 (51%)
Query: 224 DGNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR---ETPLKKHQRFIEFYDVRDAAK 280
D + T+ V NL V+ + + ++F GP K + +T F+EFY+ R AA
Sbjct: 4 DEDQPRTLYVGNLSRDVTEALILQVFSQIGPCKSCKMILDTTGNDPYCFVEFYENRHAAA 63
Query: 281 ALKEMNGQEIYGKHVVIEF-SRPGGHSK 307
AL MNG++I GK + + + S P K
Sbjct: 64 ALAAMNGRKILGKDMKVNWASTPSSQKK 91
>TAIR|locus:2087457 [details] [associations]
symbol:AT3G14100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005829 "cytosol" evidence=RCA] [GO:0006007
"glucose catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP000600 HSSP:P33240 KO:K13201 OMA:WAVEPGQ EMBL:AY139775
EMBL:BT004540 IPI:IPI00517194 RefSeq:NP_188026.1 UniGene:At.22594
UniGene:At.70203 ProteinModelPortal:Q9LJH8 SMR:Q9LJH8 IntAct:Q9LJH8
STRING:Q9LJH8 PRIDE:Q9LJH8 EnsemblPlants:AT3G14100.1 GeneID:820626
KEGG:ath:AT3G14100 TAIR:At3g14100 InParanoid:Q9LJH8
PhylomeDB:Q9LJH8 ProtClustDB:CLSN2682164 Genevestigator:Q9LJH8
Uniprot:Q9LJH8
Length = 427
Score = 108 (43.1 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 32/122 (26%), Positives = 59/122 (48%)
Query: 216 VPTCNAVP--DGNNQGTIVVFNLDSGVSSSTLKEIFQAFGPV---KELRETPLKKHQRFI 270
VP+ N P D + ++ V N+ + V+ L+EIF + GPV K +R+ K F+
Sbjct: 44 VPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKD--KSSYGFV 101
Query: 271 EFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGGH---SKKFFXXXXXXXXXXXXXXTIY 327
++D R AA A+ +NG+ ++G+ + + ++ G + F T+Y
Sbjct: 102 HYFDRRSAALAILSLNGRHLFGQPIKVNWAYATGQREDTSSHFNIFVGDLSPEVTDATLY 161
Query: 328 QT 329
Q+
Sbjct: 162 QS 163
Score = 51 (23.0 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 25 LFRPPQVYYPYGAASPPTLPPYPSNDV 51
L + +Y+P G +PP L P PS ++
Sbjct: 24 LMQQHSLYHP-GVLAPPQLEPVPSGNL 49
>DICTYBASE|DDB_G0276725 [details] [associations]
symbol:DDB_G0276725 "putative RNA-binding protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0276725 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000019 eggNOG:COG0724
RefSeq:XP_643007.1 ProteinModelPortal:Q550X7
EnsemblProtists:DDB0202911 GeneID:8620667 KEGG:ddi:DDB_G0276725
InParanoid:Q550X7 Uniprot:Q550X7
Length = 78
Score = 95 (38.5 bits), Expect = 0.00046, P = 0.00046
Identities = 22/71 (30%), Positives = 38/71 (53%)
Query: 230 TIVVFNLDSGVSSSTLKEIFQAFGPVKEL-----RETPLKKHQRFIEFYDVRDAAKALKE 284
+I V L+S +S LK F +G ++ L +ET + + +IE+ + DA KA+ +
Sbjct: 5 SIYVGGLNSHISKEILKTKFSVYGEIQSLVFVKGKETGISEGYAYIEYNNKEDAVKAIDD 64
Query: 285 MNGQEIYGKHV 295
+N Q G H+
Sbjct: 65 LNDQPFEGNHL 75
>UNIPROTKB|A6NKZ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOGENOM:HOG000206748 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00646522 ProteinModelPortal:A6NKZ9 SMR:A6NKZ9
STRING:A6NKZ9 Ensembl:ENST00000369086 ArrayExpress:A6NKZ9
Bgee:A6NKZ9 Uniprot:A6NKZ9
Length = 85
Score = 95 (38.5 bits), Expect = 0.00046, P = 0.00046
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 269 FIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGGHSKK 308
F+EFY+ RDAA AL MNG++I GK V + ++ KK
Sbjct: 13 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKK 52
>TAIR|locus:2023903 [details] [associations]
symbol:ATE1 "ATPase E1" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 UniGene:At.66943
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AK228412 IPI:IPI00541371
RefSeq:NP_563931.2 ProteinModelPortal:Q0WRA3 SMR:Q0WRA3
STRING:Q0WRA3 PaxDb:Q0WRA3 PRIDE:Q0WRA3 EnsemblPlants:AT1G13690.1
GeneID:837930 KEGG:ath:AT1G13690 TAIR:At1g13690 InParanoid:Q0WRA3
OMA:AQPIWAD PhylomeDB:Q0WRA3 ProtClustDB:CLSN2690943
Genevestigator:Q0WRA3 Uniprot:Q0WRA3
Length = 177
Score = 108 (43.1 bits), Expect = 0.00053, P = 0.00053
Identities = 26/81 (32%), Positives = 46/81 (56%)
Query: 228 QGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPL----KKHQRF--IEFYDVRDAAKA 281
+ T+ V L V+ S L F FG +K+++ TPL +KH+ F + F + DA+ A
Sbjct: 12 KNTLYVGGLADEVNESILHAAFIPFGDIKDVK-TPLDQANQKHRSFGFVTFLEREDASAA 70
Query: 282 LKEMNGQEIYGKHVVIEFSRP 302
+ M+G E+YG+ + + ++ P
Sbjct: 71 MDNMDGAELYGRVLTVNYALP 91
>ASPGD|ASPL0000065410 [details] [associations]
symbol:AN7456 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACD01000129 EMBL:BN001304 eggNOG:COG0724
HOGENOM:HOG000276232 KO:K12833 OrthoDB:EOG4HB1W3 RefSeq:XP_680725.1
ProteinModelPortal:Q5AW74 SMR:Q5AW74 STRING:Q5AW74
EnsemblFungi:CADANIAT00000549 GeneID:2869562 KEGG:ani:AN7456.2
Uniprot:Q5AW74
Length = 172
Score = 107 (42.7 bits), Expect = 0.00059, P = 0.00059
Identities = 23/82 (28%), Positives = 46/82 (56%)
Query: 223 PDGNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRE--TPLKKHQRFIEFYDVRDAAK 280
P+ N + V NL+ V++ L ++F FGP++++R+ K F+ + DV DA +
Sbjct: 66 PEANR--ILFVKNLNYNVTAEQLFDLFGKFGPIRQIRQGIANNSKGTAFVVYEDVHDAKQ 123
Query: 281 ALKEMNGQEIYGKHVVIEFSRP 302
A ++NG +++V+ + +P
Sbjct: 124 ACDKLNGFNFQNRYLVVLYHQP 145
>UNIPROTKB|F1NCV3 [details] [associations]
symbol:SRSF5A "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 EMBL:AADN02003170 EMBL:AADN02003171
IPI:IPI00577087 Ensembl:ENSGALT00000038019 ArrayExpress:F1NCV3
Uniprot:F1NCV3
Length = 163
Score = 105 (42.0 bits), Expect = 0.00075, P = 0.00075
Identities = 24/71 (33%), Positives = 41/71 (57%)
Query: 231 IVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEI 290
+ V +L S +++ F+ +G ++E+ LK F+EF D RDA A+ E+NG+E+
Sbjct: 6 VFVGHLSSRARERDVEKFFKGYGRIREIH---LKNGFGFVEFEDHRDADDAIYELNGKEL 62
Query: 291 YGKHVVIEFSR 301
+ V IE +R
Sbjct: 63 CDERVTIEHAR 73
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 93 (37.8 bits), Expect = 0.00075, P = 0.00075
Identities = 19/78 (24%), Positives = 42/78 (53%)
Query: 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKEL-----RETPLKKHQRFIEFYDVRDAAK 280
+++G + V L + +L+++F +G + E+ RET + F+ F ++ DA
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 281 ALKEMNGQEIYGKHVVIE 298
A+ MNG+ + G+ + ++
Sbjct: 63 AMMAMNGKSVDGRQIRVD 80
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 93 (37.8 bits), Expect = 0.00075, P = 0.00075
Identities = 19/78 (24%), Positives = 42/78 (53%)
Query: 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKEL-----RETPLKKHQRFIEFYDVRDAAK 280
+++G + V L + +L+++F +G + E+ RET + F+ F ++ DA
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 281 ALKEMNGQEIYGKHVVIE 298
A+ MNG+ + G+ + ++
Sbjct: 63 AMMAMNGKSVDGRQIRVD 80
>POMBASE|SPBC29A3.07c [details] [associations]
symbol:sab14 "U2 snRNP-associated protein SF3B14
ortholog (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000384 "first spliceosomal transesterification activity"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISM] [GO:0005681
"spliceosomal complex" evidence=NAS] [GO:0005686 "U2 snRNP"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPBC29A3.07c GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0005686 eggNOG:COG0724 GO:GO:0045292 HOGENOM:HOG000276232
PIR:T40078 HSSP:Q9Y3B4 ProteinModelPortal:O59670 IntAct:O59670
STRING:O59670 OrthoDB:EOG4HB1W3 NextBio:20801589 GO:GO:0000384
Uniprot:O59670
Length = 115
Score = 93 (37.8 bits), Expect = 0.00075, P = 0.00075
Identities = 18/81 (22%), Positives = 46/81 (56%)
Query: 226 NNQGTIVVF--NLDSGVSSSTLKEIFQAFGPVKELR--ETPLKKHQRFIEFYDVRDAAKA 281
N + ++F NL +++ + ++F +GPV+++R T + F+ + +V+DA +A
Sbjct: 7 NQEVNSILFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQTRGTAFVVYENVQDARRA 66
Query: 282 LKEMNGQEIYGKHVVIEFSRP 302
++++G +++V+ + P
Sbjct: 67 CEKLSGYNFMDRYLVVHYYNP 87
>UNIPROTKB|F6XIK8 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:10492 KO:K13160 OMA:GNMATEH Ensembl:ENSCAFT00000004869
EMBL:AAEX03008501 RefSeq:XP_003431698.1 ProteinModelPortal:F6XIK8
GeneID:474986 KEGG:cfa:474986 Uniprot:F6XIK8
Length = 562
Score = 117 (46.2 bits), Expect = 0.00075, P = 0.00075
Identities = 37/115 (32%), Positives = 65/115 (56%)
Query: 202 RGLVAGR-PVWAQF-IVPTCNAV--PDGNNQGTI-VVF--NLDSGVSSSTLKEIFQAFGP 254
R L++G+ VW V + + PD + V+F NL + V+ L++ F FG
Sbjct: 304 RRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGK 363
Query: 255 VKELRETPLKKHQRFIEFYDVRDAA-KALKEMNGQEIYGKHVVIEFSRPGGHSKK 308
++ +++ LK + FI F D RD A KA++EMNG+++ G+++ I F++P +K
Sbjct: 364 LERVKK--LKDYA-FIHF-DERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRK 414
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 112 (44.5 bits), Expect = 0.00084, P = 0.00084
Identities = 27/82 (32%), Positives = 43/82 (52%)
Query: 230 TIVVFNLDSGVSSSTLKEIFQAFGPVKELR---ETPLKKHQRFIEFYDVRDAAKALKEMN 286
T+ V NL V+ + + ++F GP K + +T F+EF++ R AA AL MN
Sbjct: 4 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMN 63
Query: 287 GQEIYGKHVVIEFSRPGGHSKK 308
G++I GK V + ++ KK
Sbjct: 64 GRKIMGKEVKVNWATTPSSQKK 85
>UNIPROTKB|O60506 [details] [associations]
symbol:SYNCRIP "Heterogeneous nuclear ribonucleoprotein Q"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0071204 "histone pre-mRNA 3'end processing
complex" evidence=ISS] [GO:0070937 "CRD-mediated mRNA stability
complex" evidence=IDA] [GO:0070934 "CRD-mediated mRNA
stabilization" evidence=IMP] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0017148 "negative regulation of translation"
evidence=IDA;IMP] [GO:0071346 "cellular response to
interferon-gamma" evidence=IDA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0005634 "nucleus" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005783 GO:GO:0019048 GO:GO:0005654 GO:GO:0017148
GO:GO:0000166 EMBL:CH471051 eggNOG:NOG258596 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003723 GO:GO:0071346 GO:GO:0000398 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204
EMBL:AF155568 EMBL:AF037448 EMBL:AY034481 EMBL:AY034482
EMBL:AY034483 EMBL:AK222776 EMBL:AL136082 EMBL:BC015575
EMBL:BC032643 EMBL:BC040844 IPI:IPI00018140 IPI:IPI00402182
IPI:IPI00402183 IPI:IPI00402184 IPI:IPI00402185
RefSeq:NP_001153145.1 RefSeq:NP_001153146.1 RefSeq:NP_001153147.1
RefSeq:NP_001153148.1 RefSeq:NP_001153149.1 RefSeq:NP_001240700.1
RefSeq:NP_006363.4 UniGene:Hs.571177 PDB:2DGU PDBsum:2DGU
ProteinModelPortal:O60506 SMR:O60506 IntAct:O60506
MINT:MINT-2796763 STRING:O60506 PhosphoSite:O60506 PaxDb:O60506
PRIDE:O60506 DNASU:10492 Ensembl:ENST00000355238
Ensembl:ENST00000369622 GeneID:10492 KEGG:hsa:10492 UCSC:uc003pku.3
UCSC:uc003pkv.3 UCSC:uc003pkw.3 UCSC:uc003pkx.3 UCSC:uc003pkz.2
CTD:10492 GeneCards:GC06M086267 HGNC:HGNC:16918 HPA:CAB010895
neXtProt:NX_O60506 PharmGKB:PA134985065 InParanoid:O60506 KO:K13160
OMA:GNMATEH OrthoDB:EOG4FN4HM PhylomeDB:O60506 ChiTaRS:SYNCRIP
EvolutionaryTrace:O60506 GenomeRNAi:10492 NextBio:39814
ArrayExpress:O60506 Bgee:O60506 CleanEx:HS_SYNCRIP
Genevestigator:O60506 GermOnline:ENSG00000135316 Uniprot:O60506
Length = 623
Score = 117 (46.2 bits), Expect = 0.00086, P = 0.00086
Identities = 37/115 (32%), Positives = 65/115 (56%)
Query: 202 RGLVAGR-PVWAQF-IVPTCNAV--PDGNNQGTI-VVF--NLDSGVSSSTLKEIFQAFGP 254
R L++G+ VW V + + PD + V+F NL + V+ L++ F FG
Sbjct: 304 RRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGK 363
Query: 255 VKELRETPLKKHQRFIEFYDVRDAA-KALKEMNGQEIYGKHVVIEFSRPGGHSKK 308
++ +++ LK + FI F D RD A KA++EMNG+++ G+++ I F++P +K
Sbjct: 364 LERVKK--LKDYA-FIHF-DERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRK 414
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 112 (44.5 bits), Expect = 0.00086, P = 0.00086
Identities = 27/82 (32%), Positives = 43/82 (52%)
Query: 230 TIVVFNLDSGVSSSTLKEIFQAFGPVKELR---ETPLKKHQRFIEFYDVRDAAKALKEMN 286
T+ V NL V+ + + ++F GP K + +T F+EF++ R AA AL MN
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMN 67
Query: 287 GQEIYGKHVVIEFSRPGGHSKK 308
G++I GK V + ++ KK
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKK 89
>UNIPROTKB|F2Z5D4 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=IEA] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 OMA:GNMATEH
EMBL:CU076072 Ensembl:ENSSSCT00000004748 Uniprot:F2Z5D4
Length = 627
Score = 117 (46.2 bits), Expect = 0.00087, P = 0.00087
Identities = 37/115 (32%), Positives = 65/115 (56%)
Query: 202 RGLVAGR-PVWAQF-IVPTCNAV--PDGNNQGTI-VVF--NLDSGVSSSTLKEIFQAFGP 254
R L++G+ VW V + + PD + V+F NL + V+ L++ F FG
Sbjct: 308 RRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGK 367
Query: 255 VKELRETPLKKHQRFIEFYDVRDAA-KALKEMNGQEIYGKHVVIEFSRPGGHSKK 308
++ +++ LK + FI F D RD A KA++EMNG+++ G+++ I F++P +K
Sbjct: 368 LERVKK--LKDYA-FIHF-DERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRK 418
>UNIPROTKB|F1MCT8 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=IEA] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 OMA:GNMATEH
EMBL:DAAA02026516 EMBL:DAAA02026515 IPI:IPI00721347
Ensembl:ENSBTAT00000008774 Uniprot:F1MCT8
Length = 638
Score = 117 (46.2 bits), Expect = 0.00089, P = 0.00089
Identities = 37/115 (32%), Positives = 65/115 (56%)
Query: 202 RGLVAGR-PVWAQF-IVPTCNAV--PDGNNQGTI-VVF--NLDSGVSSSTLKEIFQAFGP 254
R L++G+ VW V + + PD + V+F NL + V+ L++ F FG
Sbjct: 319 RRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGK 378
Query: 255 VKELRETPLKKHQRFIEFYDVRDAA-KALKEMNGQEIYGKHVVIEFSRPGGHSKK 308
++ +++ LK + FI F D RD A KA++EMNG+++ G+++ I F++P +K
Sbjct: 379 LERVKK--LKDYA-FIHF-DERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRK 429
>RGD|1305683 [details] [associations]
symbol:Syncrip "synaptotagmin binding, cytoplasmic RNA
interacting protein" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=ISO] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO;ISS]
[GO:0070934 "CRD-mediated mRNA stabilization" evidence=ISO]
[GO:0070937 "CRD-mediated mRNA stability complex" evidence=ISO;ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=ISO;ISS] [GO:0071346 "cellular response to
interferon-gamma" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305683 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 GO:GO:0006397
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0005681 GO:GO:0003723
GO:GO:0070937 GO:GO:0071204 CTD:10492 KO:K13160 EMBL:AY325202
IPI:IPI00382222 RefSeq:NP_001041381.1 UniGene:Rn.202606
ProteinModelPortal:Q7TP47 SMR:Q7TP47 IntAct:Q7TP47 STRING:Q7TP47
PhosphoSite:Q7TP47 PRIDE:Q7TP47 Ensembl:ENSRNOT00000041655
GeneID:363113 KEGG:rno:363113 UCSC:RGD:1305683 HOGENOM:HOG000186082
NextBio:682484 ArrayExpress:Q7TP47 Genevestigator:Q7TP47
GermOnline:ENSRNOG00000000204 Uniprot:Q7TP47
Length = 533
Score = 116 (45.9 bits), Expect = 0.00089, P = 0.00089
Identities = 37/115 (32%), Positives = 65/115 (56%)
Query: 202 RGLVAGR-PVWAQF-IVPTCNAV--PDGNNQGTI-VVF--NLDSGVSSSTLKEIFQAFGP 254
R L++G+ VW V + + PD + V+F NL + V+ L++ F FG
Sbjct: 214 RRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGK 273
Query: 255 VKELRETPLKKHQRFIEFYDVRDAA-KALKEMNGQEIYGKHVVIEFSRPGGHSKK 308
++ +++ LK + FI F D RD A KA++EMNG+++ G+++ I F++P +K
Sbjct: 274 LERVKK--LKDYA-FIHF-DERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRK 324
>UNIPROTKB|Q7TP47 [details] [associations]
symbol:Syncrip "Heterogeneous nuclear ribonucleoprotein Q"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1305683 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 eggNOG:NOG258596 HOVERGEN:HBG051917
GO:GO:0006397 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0005681
GO:GO:0003723 GO:GO:0070937 GO:GO:0071204 CTD:10492 KO:K13160
EMBL:AY325202 IPI:IPI00382222 RefSeq:NP_001041381.1
UniGene:Rn.202606 ProteinModelPortal:Q7TP47 SMR:Q7TP47
IntAct:Q7TP47 STRING:Q7TP47 PhosphoSite:Q7TP47 PRIDE:Q7TP47
Ensembl:ENSRNOT00000041655 GeneID:363113 KEGG:rno:363113
UCSC:RGD:1305683 HOGENOM:HOG000186082 NextBio:682484
ArrayExpress:Q7TP47 Genevestigator:Q7TP47
GermOnline:ENSRNOG00000000204 Uniprot:Q7TP47
Length = 533
Score = 116 (45.9 bits), Expect = 0.00089, P = 0.00089
Identities = 37/115 (32%), Positives = 65/115 (56%)
Query: 202 RGLVAGR-PVWAQF-IVPTCNAV--PDGNNQGTI-VVF--NLDSGVSSSTLKEIFQAFGP 254
R L++G+ VW V + + PD + V+F NL + V+ L++ F FG
Sbjct: 214 RRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGK 273
Query: 255 VKELRETPLKKHQRFIEFYDVRDAA-KALKEMNGQEIYGKHVVIEFSRPGGHSKK 308
++ +++ LK + FI F D RD A KA++EMNG+++ G+++ I F++P +K
Sbjct: 274 LERVKK--LKDYA-FIHF-DERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRK 324
>UNIPROTKB|P19338 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IPI] [GO:0001525 "angiogenesis" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0042162 "telomeric DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938
Pathway_Interaction_DB:telomerasepathway GO:GO:0005654
GO:GO:0005730 Pathway_Interaction_DB:aurora_b_pathway GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0003723 GO:GO:0030529
GO:GO:0042162 EMBL:AC017104 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K11294 CTD:4691 HOGENOM:HOG000113885 EMBL:M60858 EMBL:AK091742
IPI:IPI00604620 PIR:A35804 PIR:S53728 RefSeq:NP_005372.2
UniGene:Hs.79110 PDB:2FC8 PDB:2FC9 PDB:2KRR PDBsum:2FC8 PDBsum:2FC9
PDBsum:2KRR ProteinModelPortal:P19338 SMR:P19338 DIP:DIP-89N
IntAct:P19338 MINT:MINT-4999081 STRING:P19338 PhosphoSite:P19338
DMDM:90110781 DOSAC-COBS-2DPAGE:P19338 SWISS-2DPAGE:P19338
PaxDb:P19338 PRIDE:P19338 DNASU:4691 Ensembl:ENST00000322723
GeneID:4691 KEGG:hsa:4691 UCSC:uc002vru.3 GeneCards:GC02M232318
HGNC:HGNC:7667 HPA:CAB004210 HPA:HPA023981 MIM:164035
neXtProt:NX_P19338 PharmGKB:PA31469 InParanoid:P19338 OMA:KERDTRT
OrthoDB:EOG45MN5J PhylomeDB:P19338 ChiTaRS:NCL
EvolutionaryTrace:P19338 GenomeRNAi:4691 NextBio:18090
PMAP-CutDB:P19338 ArrayExpress:P19338 Bgee:P19338 CleanEx:HS_NCL
Genevestigator:P19338 GermOnline:ENSG00000115053 Uniprot:P19338
Length = 710
Score = 102 (41.0 bits), Expect = 0.00092, Sum P(2) = 0.00092
Identities = 27/86 (31%), Positives = 43/86 (50%)
Query: 220 NAVPDGNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVK-ELRETPLKKHQRFIEFYDVRDA 278
N+ G ++ T+V+ NL + TL+E+F+ +K + K FIEF DA
Sbjct: 478 NSTWSGESK-TLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDA 536
Query: 279 AKALKEMNGQEIYGKHVVIEFSRPGG 304
+AL N +EI G+ + +E P G
Sbjct: 537 KEALNSCNKREIEGRAIRLELQGPRG 562
Score = 60 (26.2 bits), Expect = 0.00092, Sum P(2) = 0.00092
Identities = 19/71 (26%), Positives = 34/71 (47%)
Query: 83 RTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQ 142
RTL+ +P V++ ++ E E+R V + +GI + F AE F+E +Q
Sbjct: 393 RTLLAKNLPYKVTQDELKEVFEDAAEIRLVSKDGKSKGIAYIEFKTEADAEKTFEE--KQ 450
Query: 143 HMQLQQQSYGL 153
++ +S L
Sbjct: 451 GTEIDGRSISL 461
>UNIPROTKB|Q4R4J7 [details] [associations]
symbol:NCL "Nucleolin" species:9541 "Macaca fascicularis"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 OrthoDB:EOG45MN5J
EMBL:AB169897 EMBL:AB168220 ProteinModelPortal:Q4R4J7 SMR:Q4R4J7
PRIDE:Q4R4J7 Uniprot:Q4R4J7
Length = 711
Score = 102 (41.0 bits), Expect = 0.00093, Sum P(2) = 0.00093
Identities = 27/86 (31%), Positives = 43/86 (50%)
Query: 220 NAVPDGNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVK-ELRETPLKKHQRFIEFYDVRDA 278
N+ G ++ T+V+ NL + TL+E+F+ +K + K FIEF DA
Sbjct: 479 NSTWSGESK-TLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDA 537
Query: 279 AKALKEMNGQEIYGKHVVIEFSRPGG 304
+AL N +EI G+ + +E P G
Sbjct: 538 KEALNSCNKREIEGRAIRLELQGPRG 563
Score = 60 (26.2 bits), Expect = 0.00093, Sum P(2) = 0.00093
Identities = 19/71 (26%), Positives = 34/71 (47%)
Query: 83 RTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQ 142
RTL+ +P V++ ++ E E+R V + +GI + F AE F+E +Q
Sbjct: 394 RTLLAKNLPYKVTQDELKEVFEDAAEIRLVSKDGKSKGIAYIEFKTEADAEKTFEE--KQ 451
Query: 143 HMQLQQQSYGL 153
++ +S L
Sbjct: 452 GTEIDGRSISL 462
>UNIPROTKB|Q5RF26 [details] [associations]
symbol:NCL "Nucleolin" species:9601 "Pongo abelii"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 KO:K11294 CTD:4691
EMBL:CR857335 RefSeq:NP_001127178.1 UniGene:Pab.18146
ProteinModelPortal:Q5RF26 SMR:Q5RF26 GeneID:100174230
KEGG:pon:100174230 InParanoid:Q5RF26 Uniprot:Q5RF26
Length = 712
Score = 102 (41.0 bits), Expect = 0.00093, Sum P(2) = 0.00093
Identities = 27/86 (31%), Positives = 43/86 (50%)
Query: 220 NAVPDGNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVK-ELRETPLKKHQRFIEFYDVRDA 278
N+ G ++ T+V+ NL + TL+E+F+ +K + K FIEF DA
Sbjct: 480 NSTWSGESK-TLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDA 538
Query: 279 AKALKEMNGQEIYGKHVVIEFSRPGG 304
+AL N +EI G+ + +E P G
Sbjct: 539 KEALNSCNKREIEGRAIRLELQGPRG 564
Score = 60 (26.2 bits), Expect = 0.00093, Sum P(2) = 0.00093
Identities = 19/71 (26%), Positives = 34/71 (47%)
Query: 83 RTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQ 142
RTL+ +P V++ ++ E E+R V + +GI + F AE F+E +Q
Sbjct: 395 RTLLAKNLPYKVTQDELKEVFEDAAEIRLVSKDGKSKGIAYIEFKTEADAEKTFEE--KQ 452
Query: 143 HMQLQQQSYGL 153
++ +S L
Sbjct: 453 GTEIDGRSISL 463
>UNIPROTKB|E7ETM7 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 EMBL:AL109936 HGNC:HGNC:5047
ChiTaRS:HNRNPR IPI:IPI00910614 ProteinModelPortal:E7ETM7 SMR:E7ETM7
Ensembl:ENST00000426846 UCSC:uc010odx.2 ArrayExpress:E7ETM7
Bgee:E7ETM7 Uniprot:E7ETM7
Length = 473
Score = 115 (45.5 bits), Expect = 0.00097, P = 0.00097
Identities = 36/114 (31%), Positives = 61/114 (53%)
Query: 202 RGLVAGR-PVWAQFI-VPTCNAV--PDGNNQGTI-VVF--NLDSGVSSSTLKEIFQAFGP 254
R L++G+ VW + V + V PD + V+F NL + V+ L++ F FG
Sbjct: 147 RRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGK 206
Query: 255 VKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGGHSKK 308
++ +++ LK + F+ F D A KA+ EMNG+EI G+ + I ++P +K
Sbjct: 207 LERVKK--LKDYA-FVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRK 257
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.136 0.408 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 408 369 0.00085 117 3 11 22 0.40 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 68
No. of states in DFA: 600 (64 KB)
Total size of DFA: 225 KB (2123 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 32.94u 0.09s 33.03t Elapsed: 00:00:02
Total cpu time: 32.94u 0.09s 33.03t Elapsed: 00:00:02
Start: Sat May 11 02:14:24 2013 End: Sat May 11 02:14:26 2013