Query 046223
Match_columns 408
No_of_seqs 491 out of 2557
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 09:54:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046223.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046223hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 1.3E-29 2.8E-34 242.4 26.8 163 78-305 103-277 (346)
2 KOG0117 Heterogeneous nuclear 100.0 2.1E-29 4.5E-34 234.7 21.1 217 80-311 81-339 (506)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 8.1E-29 1.8E-33 241.2 21.9 76 229-304 270-350 (352)
4 TIGR01645 half-pint poly-U bin 100.0 4.5E-28 9.8E-33 243.3 20.5 170 80-303 105-284 (612)
5 TIGR01648 hnRNP-R-Q heterogene 100.0 9E-27 2E-31 233.7 28.0 210 81-305 57-309 (578)
6 KOG0148 Apoptosis-promoting RN 100.0 7.5E-28 1.6E-32 211.0 15.8 176 81-308 61-243 (321)
7 KOG0144 RNA-binding protein CU 99.9 1.3E-26 2.8E-31 215.2 15.6 168 78-306 30-209 (510)
8 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 2E-25 4.4E-30 225.0 24.9 197 78-303 271-480 (481)
9 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 7.3E-26 1.6E-30 228.2 20.3 173 81-305 1-176 (481)
10 TIGR01622 SF-CC1 splicing fact 99.9 8.3E-26 1.8E-30 227.6 20.7 171 78-302 85-265 (457)
11 TIGR01628 PABP-1234 polyadenyl 99.9 8.3E-26 1.8E-30 233.1 19.0 158 84-304 2-168 (562)
12 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.7E-24 3.7E-29 221.1 25.7 193 74-304 167-376 (509)
13 TIGR01628 PABP-1234 polyadenyl 99.9 4.7E-25 1E-29 227.5 19.9 223 80-304 86-365 (562)
14 KOG0131 Splicing factor 3b, su 99.9 7.9E-25 1.7E-29 181.7 13.8 164 80-307 7-181 (203)
15 KOG0145 RNA-binding protein EL 99.9 3.7E-24 8E-29 186.7 13.6 160 80-304 39-210 (360)
16 TIGR01642 U2AF_lg U2 snRNP aux 99.9 7.9E-23 1.7E-27 208.8 21.4 187 80-303 293-502 (509)
17 KOG0109 RNA-binding protein LA 99.9 5.8E-24 1.3E-28 188.5 9.6 147 84-303 4-150 (346)
18 KOG0127 Nucleolar protein fibr 99.9 5.3E-23 1.1E-27 196.2 16.5 184 82-304 5-197 (678)
19 TIGR01622 SF-CC1 splicing fact 99.9 2E-21 4.4E-26 195.8 23.4 217 82-303 186-448 (457)
20 KOG0145 RNA-binding protein EL 99.9 7E-22 1.5E-26 172.5 16.4 222 72-303 117-358 (360)
21 KOG0127 Nucleolar protein fibr 99.9 2.5E-21 5.5E-26 184.8 17.4 219 82-304 117-379 (678)
22 KOG0124 Polypyrimidine tract-b 99.8 2.5E-20 5.5E-25 169.9 11.7 166 83-302 114-289 (544)
23 KOG0123 Polyadenylate-binding 99.8 1.1E-19 2.5E-24 174.9 15.2 150 83-306 2-156 (369)
24 KOG4206 Spliceosomal protein s 99.8 1.1E-18 2.3E-23 151.1 18.8 207 79-301 6-220 (221)
25 KOG0110 RNA-binding protein (R 99.8 7.7E-20 1.7E-24 180.1 12.4 164 85-304 518-694 (725)
26 KOG0146 RNA-binding protein ET 99.8 2.1E-19 4.5E-24 157.7 10.9 82 225-306 282-368 (371)
27 KOG0148 Apoptosis-promoting RN 99.8 2.8E-19 6.2E-24 157.3 11.1 136 79-304 3-143 (321)
28 KOG0144 RNA-binding protein CU 99.8 3E-19 6.4E-24 166.4 11.7 80 225-304 421-505 (510)
29 KOG0147 Transcriptional coacti 99.8 5E-19 1.1E-23 170.1 7.3 176 76-303 173-358 (549)
30 TIGR01645 half-pint poly-U bin 99.8 6.6E-17 1.4E-21 163.1 22.6 75 81-159 203-282 (612)
31 KOG0123 Polyadenylate-binding 99.8 5.5E-18 1.2E-22 163.2 12.7 161 85-303 79-246 (369)
32 KOG4205 RNA-binding protein mu 99.7 6.5E-18 1.4E-22 157.2 10.9 165 81-306 5-179 (311)
33 KOG0147 Transcriptional coacti 99.7 1.2E-17 2.6E-22 160.6 12.7 221 82-305 278-530 (549)
34 KOG0105 Alternative splicing f 99.7 5.8E-17 1.3E-21 135.1 14.7 179 79-298 3-185 (241)
35 KOG1457 RNA binding protein (c 99.7 5.8E-16 1.3E-20 132.9 16.5 217 74-291 26-274 (284)
36 KOG1190 Polypyrimidine tract-b 99.7 9.8E-16 2.1E-20 142.2 18.7 218 83-307 151-377 (492)
37 KOG0106 Alternative splicing f 99.7 1.1E-16 2.4E-21 140.1 9.5 166 83-300 2-168 (216)
38 KOG4660 Protein Mei2, essentia 99.7 7.4E-16 1.6E-20 148.8 15.9 249 1-306 1-253 (549)
39 PLN03134 glycine-rich RNA-bind 99.7 7.8E-16 1.7E-20 129.4 13.2 79 227-305 33-116 (144)
40 KOG0110 RNA-binding protein (R 99.6 2.1E-15 4.5E-20 149.2 14.2 202 78-301 381-596 (725)
41 KOG1190 Polypyrimidine tract-b 99.6 9.8E-15 2.1E-19 135.6 16.1 188 82-302 297-490 (492)
42 KOG1548 Transcription elongati 99.6 7.4E-14 1.6E-18 127.5 18.7 196 79-302 131-351 (382)
43 KOG0107 Alternative splicing f 99.6 3.9E-15 8.5E-20 123.4 7.9 77 228-304 10-86 (195)
44 PLN03134 glycine-rich RNA-bind 99.6 9.5E-15 2.1E-19 122.8 9.4 76 79-158 31-111 (144)
45 KOG4212 RNA-binding protein hn 99.5 1.7E-13 3.7E-18 128.3 15.6 214 81-301 43-292 (608)
46 PF00076 RRM_1: RNA recognitio 99.5 5.6E-14 1.2E-18 103.2 8.6 66 231-296 1-70 (70)
47 PF00076 RRM_1: RNA recognitio 99.5 3.9E-14 8.5E-19 104.0 7.6 61 85-145 1-65 (70)
48 KOG0107 Alternative splicing f 99.5 2.1E-14 4.6E-19 119.1 6.7 75 81-159 9-83 (195)
49 KOG0125 Ataxin 2-binding prote 99.5 1.2E-13 2.7E-18 125.2 10.7 80 225-304 93-175 (376)
50 KOG4211 Splicing factor hnRNP- 99.5 4.8E-13 1E-17 127.6 14.8 164 81-301 9-180 (510)
51 KOG0121 Nuclear cap-binding pr 99.5 5.1E-14 1.1E-18 110.7 6.7 77 227-303 35-116 (153)
52 TIGR01659 sex-lethal sex-letha 99.5 1.2E-13 2.5E-18 132.6 10.1 79 226-304 105-188 (346)
53 KOG0122 Translation initiation 99.5 1.1E-13 2.4E-18 120.8 8.9 79 225-303 186-269 (270)
54 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 1.4E-13 3E-18 134.1 10.3 77 228-304 3-84 (352)
55 KOG1456 Heterogeneous nuclear 99.5 7.4E-12 1.6E-16 115.3 19.1 225 78-304 116-364 (494)
56 TIGR01648 hnRNP-R-Q heterogene 99.5 4.2E-13 9.1E-18 135.5 11.7 137 81-257 232-370 (578)
57 KOG0125 Ataxin 2-binding prote 99.4 1.1E-12 2.4E-17 119.1 11.5 73 79-153 93-168 (376)
58 KOG1456 Heterogeneous nuclear 99.4 7.3E-12 1.6E-16 115.4 16.5 177 77-310 26-206 (494)
59 PLN03120 nucleic acid binding 99.4 7.6E-13 1.6E-17 119.2 9.8 74 228-302 4-79 (260)
60 KOG0124 Polypyrimidine tract-b 99.4 2.4E-12 5.2E-17 118.1 13.0 66 80-145 208-278 (544)
61 KOG4207 Predicted splicing fac 99.4 3.9E-13 8.5E-18 114.3 6.9 77 225-301 10-91 (256)
62 PLN03120 nucleic acid binding 99.4 7.6E-13 1.6E-17 119.2 9.1 69 82-153 4-74 (260)
63 KOG0114 Predicted RNA-binding 99.4 1.2E-12 2.5E-17 99.2 8.2 76 79-158 15-92 (124)
64 PF14259 RRM_6: RNA recognitio 99.4 1.3E-12 2.9E-17 96.0 8.4 66 231-296 1-70 (70)
65 KOG0114 Predicted RNA-binding 99.4 1.5E-12 3.2E-17 98.7 8.2 78 227-304 17-96 (124)
66 PF14259 RRM_6: RNA recognitio 99.4 1.4E-12 3E-17 95.9 7.7 61 85-145 1-65 (70)
67 PLN03213 repressor of silencin 99.4 1.3E-12 2.7E-17 124.3 9.3 75 227-303 9-88 (759)
68 KOG0120 Splicing factor U2AF, 99.4 1.4E-12 3E-17 127.7 9.3 185 81-306 288-495 (500)
69 KOG0121 Nuclear cap-binding pr 99.4 1.1E-12 2.4E-17 103.2 6.4 71 79-151 33-108 (153)
70 KOG0122 Translation initiation 99.4 1.6E-12 3.5E-17 113.5 7.8 77 80-160 187-268 (270)
71 KOG0111 Cyclophilin-type pepti 99.3 1.2E-12 2.7E-17 112.2 5.3 80 227-306 9-93 (298)
72 KOG0149 Predicted RNA-binding 99.3 1.9E-12 4E-17 112.8 6.1 75 228-303 12-91 (247)
73 KOG0113 U1 small nuclear ribon 99.3 8.2E-12 1.8E-16 112.1 10.3 79 225-303 98-181 (335)
74 COG0724 RNA-binding proteins ( 99.3 1.5E-11 3.2E-16 114.7 12.7 136 82-258 115-255 (306)
75 PLN03121 nucleic acid binding 99.3 5.1E-12 1.1E-16 112.0 8.7 64 81-145 4-69 (243)
76 PF13893 RRM_5: RNA recognitio 99.3 9.2E-12 2E-16 87.2 8.1 56 245-300 1-56 (56)
77 KOG0130 RNA-binding protein RB 99.3 4.4E-12 9.6E-17 100.7 6.9 79 227-305 71-154 (170)
78 KOG0113 U1 small nuclear ribon 99.3 8.8E-12 1.9E-16 111.9 9.2 82 74-159 93-179 (335)
79 KOG0105 Alternative splicing f 99.3 5.3E-12 1.1E-16 105.7 7.2 78 227-304 5-84 (241)
80 PLN03213 repressor of silencin 99.3 7.2E-12 1.6E-16 119.2 8.8 72 80-153 8-82 (759)
81 smart00362 RRM_2 RNA recogniti 99.3 1.8E-11 3.9E-16 89.5 8.7 69 230-298 1-72 (72)
82 smart00362 RRM_2 RNA recogniti 99.3 1.9E-11 4.1E-16 89.3 8.3 62 84-145 1-65 (72)
83 KOG0149 Predicted RNA-binding 99.3 5.3E-12 1.1E-16 110.0 6.1 59 82-140 12-75 (247)
84 PLN03121 nucleic acid binding 99.3 2.3E-11 5E-16 107.9 9.6 74 228-302 5-80 (243)
85 KOG4212 RNA-binding protein hn 99.3 3.7E-10 7.9E-15 106.3 17.5 72 227-300 535-608 (608)
86 KOG4207 Predicted splicing fac 99.3 1.3E-11 2.8E-16 105.2 7.0 79 76-158 7-90 (256)
87 KOG0131 Splicing factor 3b, su 99.2 2.1E-11 4.7E-16 102.0 6.4 76 226-301 7-87 (203)
88 smart00360 RRM RNA recognition 99.2 6.1E-11 1.3E-15 86.2 7.4 66 233-298 1-71 (71)
89 KOG0126 Predicted RNA-binding 99.2 2E-12 4.2E-17 108.0 -0.7 75 227-301 34-113 (219)
90 cd00590 RRM RRM (RNA recogniti 99.2 1.2E-10 2.7E-15 85.4 8.9 70 230-299 1-74 (74)
91 KOG0117 Heterogeneous nuclear 99.2 1.2E-10 2.6E-15 109.9 10.6 77 226-302 81-163 (506)
92 KOG0108 mRNA cleavage and poly 99.2 4.3E-11 9.4E-16 116.6 7.4 77 229-305 19-100 (435)
93 KOG0111 Cyclophilin-type pepti 99.2 1.9E-11 4.1E-16 105.0 4.1 78 80-161 8-90 (298)
94 KOG0120 Splicing factor U2AF, 99.2 1.2E-10 2.6E-15 114.2 10.2 187 76-306 169-372 (500)
95 KOG0126 Predicted RNA-binding 99.2 3.3E-12 7.2E-17 106.7 -1.0 75 79-155 32-111 (219)
96 KOG4206 Spliceosomal protein s 99.1 1E-10 2.2E-15 101.8 7.7 78 228-305 9-92 (221)
97 COG0724 RNA-binding proteins ( 99.1 1.9E-10 4.1E-15 107.2 9.4 75 228-302 115-194 (306)
98 cd00590 RRM RRM (RNA recogniti 99.1 3E-10 6.6E-15 83.3 8.6 62 84-145 1-66 (74)
99 smart00360 RRM RNA recognition 99.1 2.1E-10 4.6E-15 83.3 7.4 59 87-145 1-64 (71)
100 KOG4454 RNA binding protein (R 99.1 1.8E-11 3.9E-16 105.2 1.8 142 76-295 3-155 (267)
101 PF13893 RRM_5: RNA recognitio 99.1 1.8E-10 3.9E-15 80.6 6.6 55 99-157 1-55 (56)
102 KOG0129 Predicted RNA-binding 99.1 1.1E-09 2.4E-14 105.7 12.4 161 79-284 256-432 (520)
103 smart00361 RRM_1 RNA recogniti 99.1 3.9E-10 8.5E-15 82.8 7.3 56 242-297 2-69 (70)
104 KOG0109 RNA-binding protein LA 99.1 2.2E-10 4.8E-15 102.6 5.8 73 229-304 3-75 (346)
105 KOG1365 RNA-binding protein Fu 99.0 1.8E-09 3.9E-14 100.1 11.5 184 83-301 162-360 (508)
106 KOG0112 Large RNA-binding prot 99.0 4.2E-10 9.2E-15 114.5 7.5 164 74-305 364-533 (975)
107 KOG0226 RNA-binding proteins [ 99.0 2.3E-09 4.9E-14 94.5 11.0 160 84-302 98-269 (290)
108 KOG0108 mRNA cleavage and poly 99.0 5.5E-10 1.2E-14 109.0 7.2 73 83-159 19-96 (435)
109 KOG0130 RNA-binding protein RB 99.0 5.5E-10 1.2E-14 88.9 5.3 70 78-147 68-142 (170)
110 KOG0132 RNA polymerase II C-te 98.9 2.5E-09 5.5E-14 107.3 7.0 67 81-150 420-486 (894)
111 KOG4660 Protein Mei2, essentia 98.9 1.9E-09 4.1E-14 105.0 5.7 75 222-296 69-143 (549)
112 KOG0132 RNA polymerase II C-te 98.9 3.9E-09 8.5E-14 106.0 7.9 79 228-307 421-499 (894)
113 smart00361 RRM_1 RNA recogniti 98.9 6.6E-09 1.4E-13 76.2 6.5 52 96-149 2-65 (70)
114 KOG0153 Predicted RNA-binding 98.8 1E-08 2.2E-13 94.3 8.1 79 223-302 223-302 (377)
115 KOG0128 RNA-binding protein SA 98.8 4.7E-10 1E-14 113.8 -0.8 142 81-304 666-816 (881)
116 KOG1457 RNA binding protein (c 98.8 5E-08 1.1E-12 84.5 11.5 84 226-309 32-124 (284)
117 KOG0153 Predicted RNA-binding 98.8 1.6E-08 3.4E-13 93.1 8.2 84 74-161 220-303 (377)
118 KOG0415 Predicted peptidyl pro 98.7 1.8E-08 3.8E-13 92.8 6.3 78 227-304 238-320 (479)
119 KOG4210 Nuclear localization s 98.7 2.4E-08 5.1E-13 93.3 6.4 171 80-306 86-267 (285)
120 KOG0146 RNA-binding protein ET 98.7 2.7E-08 5.9E-13 88.2 6.3 68 78-145 281-353 (371)
121 KOG4208 Nucleolar RNA-binding 98.7 7E-08 1.5E-12 82.9 7.5 79 225-303 46-130 (214)
122 KOG4208 Nucleolar RNA-binding 98.6 9E-08 2E-12 82.3 6.7 72 81-154 48-125 (214)
123 KOG0106 Alternative splicing f 98.6 4.1E-08 8.9E-13 86.5 4.5 72 229-303 2-73 (216)
124 KOG4661 Hsp27-ERE-TATA-binding 98.6 1.4E-07 3E-12 91.9 7.2 76 227-302 404-484 (940)
125 KOG0533 RRM motif-containing p 98.5 3E-07 6.4E-12 82.9 8.7 79 228-306 83-165 (243)
126 KOG0415 Predicted peptidyl pro 98.5 1.3E-07 2.7E-12 87.3 5.5 78 79-160 236-318 (479)
127 KOG4211 Splicing factor hnRNP- 98.5 2.1E-05 4.6E-10 76.1 20.6 71 229-300 282-355 (510)
128 KOG4676 Splicing factor, argin 98.4 5.2E-08 1.1E-12 90.8 0.9 191 83-296 8-219 (479)
129 KOG4205 RNA-binding protein mu 98.4 2.4E-07 5.1E-12 86.9 4.2 78 227-305 5-87 (311)
130 KOG4661 Hsp27-ERE-TATA-binding 98.4 4.8E-07 1E-11 88.2 6.1 69 79-149 402-475 (940)
131 KOG0533 RRM motif-containing p 98.3 1.3E-06 2.9E-11 78.8 7.5 75 79-155 80-158 (243)
132 KOG0116 RasGAP SH3 binding pro 98.3 1.2E-06 2.6E-11 85.4 7.7 77 228-305 288-369 (419)
133 KOG0116 RasGAP SH3 binding pro 98.3 6.4E-07 1.4E-11 87.2 5.8 71 81-154 287-362 (419)
134 KOG1548 Transcription elongati 98.3 3E-06 6.4E-11 78.3 8.9 75 227-301 133-219 (382)
135 KOG0151 Predicted splicing reg 98.3 1.2E-06 2.6E-11 87.7 6.7 79 79-161 171-257 (877)
136 KOG2193 IGF-II mRNA-binding pr 98.3 1E-07 2.3E-12 89.7 -1.0 149 84-301 3-155 (584)
137 KOG0151 Predicted splicing reg 98.3 1.4E-06 3E-11 87.2 6.7 78 225-302 171-256 (877)
138 KOG4454 RNA binding protein (R 98.2 4.7E-07 1E-11 78.4 1.9 74 228-302 9-86 (267)
139 KOG4209 Splicing factor RNPS1, 98.2 2.5E-06 5.5E-11 77.1 6.6 78 226-304 99-181 (231)
140 KOG0226 RNA-binding proteins [ 98.2 1.9E-06 4.1E-11 76.4 4.7 71 83-155 191-266 (290)
141 PF11608 Limkain-b1: Limkain b 98.2 6.3E-06 1.4E-10 60.7 6.5 69 229-302 3-76 (90)
142 PF04059 RRM_2: RNA recognitio 98.2 1.1E-05 2.5E-10 62.3 8.3 76 229-304 2-88 (97)
143 KOG4307 RNA binding protein RB 98.1 0.0002 4.3E-09 72.0 17.4 188 84-301 313-512 (944)
144 PF04059 RRM_2: RNA recognitio 98.1 2E-05 4.3E-10 61.0 7.8 63 83-145 2-71 (97)
145 PF11608 Limkain-b1: Limkain b 98.0 2.4E-05 5.3E-10 57.7 7.4 67 83-158 3-74 (90)
146 KOG1365 RNA-binding protein Fu 97.9 0.00016 3.4E-09 67.9 12.5 155 80-284 58-225 (508)
147 KOG4209 Splicing factor RNPS1, 97.9 1.1E-05 2.5E-10 72.9 5.0 67 78-145 97-168 (231)
148 PF08777 RRM_3: RNA binding mo 97.9 2.3E-05 4.9E-10 62.0 5.1 70 229-299 2-76 (105)
149 PF08777 RRM_3: RNA binding mo 97.8 6.8E-05 1.5E-09 59.3 6.7 59 83-142 2-60 (105)
150 KOG1995 Conserved Zn-finger pr 97.6 8.2E-05 1.8E-09 69.5 4.7 80 225-304 63-155 (351)
151 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.0002 4.3E-09 49.1 5.3 53 82-136 1-53 (53)
152 COG5175 MOT2 Transcriptional r 97.5 0.00015 3.2E-09 66.9 5.7 74 228-301 114-201 (480)
153 KOG1855 Predicted RNA-binding 97.4 0.00015 3.3E-09 69.0 4.5 64 79-142 228-309 (484)
154 KOG4307 RNA binding protein RB 97.2 0.00077 1.7E-08 67.9 7.2 71 229-299 868-943 (944)
155 PF05172 Nup35_RRM: Nup53/35/4 97.2 0.0017 3.6E-08 50.7 6.8 72 228-301 6-90 (100)
156 KOG2202 U2 snRNP splicing fact 97.1 0.00025 5.5E-09 63.4 2.4 60 243-302 83-147 (260)
157 PF14605 Nup35_RRM_2: Nup53/35 97.1 0.0011 2.4E-08 45.3 5.1 52 229-282 2-53 (53)
158 COG5175 MOT2 Transcriptional r 97.1 0.0009 1.9E-08 61.9 5.8 75 83-161 115-203 (480)
159 KOG1855 Predicted RNA-binding 97.1 0.00072 1.6E-08 64.6 4.9 64 225-288 228-309 (484)
160 KOG2314 Translation initiation 97.0 0.002 4.4E-08 63.6 7.3 73 77-149 53-135 (698)
161 KOG1996 mRNA splicing factor [ 97.0 0.0016 3.5E-08 59.2 6.0 62 242-303 300-367 (378)
162 KOG3152 TBP-binding protein, a 96.9 0.00058 1.3E-08 61.0 2.7 65 81-145 73-154 (278)
163 KOG0129 Predicted RNA-binding 96.9 0.0022 4.8E-08 62.8 6.6 61 78-138 366-432 (520)
164 KOG2314 Translation initiation 96.9 0.0033 7.2E-08 62.1 7.5 74 227-300 57-141 (698)
165 KOG3152 TBP-binding protein, a 96.8 0.00073 1.6E-08 60.4 2.7 68 227-294 73-157 (278)
166 KOG1995 Conserved Zn-finger pr 96.8 0.0016 3.6E-08 61.0 5.1 70 77-146 61-143 (351)
167 KOG0128 RNA-binding protein SA 96.7 0.00041 8.8E-09 71.6 -0.1 161 81-297 570-741 (881)
168 PF08952 DUF1866: Domain of un 96.7 0.006 1.3E-07 50.5 6.7 56 244-303 52-107 (146)
169 KOG4849 mRNA cleavage factor I 96.6 0.0017 3.6E-08 60.4 3.0 69 81-149 79-154 (498)
170 KOG4210 Nuclear localization s 96.5 0.0015 3.2E-08 61.3 2.3 64 81-145 183-252 (285)
171 KOG2416 Acinus (induces apopto 96.5 0.0023 4.9E-08 63.6 3.4 80 78-159 440-520 (718)
172 KOG2416 Acinus (induces apopto 96.4 0.0058 1.2E-07 60.8 5.8 79 224-303 440-522 (718)
173 KOG4849 mRNA cleavage factor I 96.3 0.005 1.1E-07 57.4 4.3 70 228-297 80-156 (498)
174 KOG0115 RNA-binding protein p5 96.1 0.01 2.2E-07 53.2 5.4 59 229-287 32-94 (275)
175 KOG2202 U2 snRNP splicing fact 96.1 0.0031 6.6E-08 56.6 1.8 54 97-152 83-141 (260)
176 PF05172 Nup35_RRM: Nup53/35/4 96.0 0.016 3.5E-07 45.2 5.5 63 81-145 5-79 (100)
177 KOG2193 IGF-II mRNA-binding pr 96.0 0.0043 9.3E-08 59.3 2.5 77 229-306 2-79 (584)
178 PF08952 DUF1866: Domain of un 95.9 0.026 5.6E-07 46.8 6.4 69 81-155 26-103 (146)
179 KOG0112 Large RNA-binding prot 95.9 0.012 2.6E-07 61.4 5.3 79 78-159 451-529 (975)
180 KOG2253 U1 snRNP complex, subu 95.6 0.022 4.8E-07 57.7 5.9 61 81-145 39-99 (668)
181 PF08675 RNA_bind: RNA binding 95.6 0.05 1.1E-06 40.4 6.1 55 229-287 10-64 (87)
182 KOG4676 Splicing factor, argin 95.5 0.031 6.8E-07 53.1 6.3 71 229-300 8-86 (479)
183 PF08675 RNA_bind: RNA binding 95.4 0.11 2.4E-06 38.6 7.4 54 84-141 11-64 (87)
184 PF15023 DUF4523: Protein of u 95.4 0.085 1.8E-06 43.3 7.4 75 224-301 82-160 (166)
185 KOG1996 mRNA splicing factor [ 95.3 0.038 8.2E-07 50.5 5.6 52 96-149 300-357 (378)
186 PF15023 DUF4523: Protein of u 95.0 0.084 1.8E-06 43.3 6.3 61 79-141 83-147 (166)
187 PF10309 DUF2414: Protein of u 94.9 0.11 2.4E-06 36.5 6.0 53 229-285 6-62 (62)
188 KOG4574 RNA-binding protein (c 94.5 0.15 3.3E-06 53.2 8.2 74 229-303 299-374 (1007)
189 KOG2591 c-Mpl binding protein, 94.4 0.079 1.7E-06 52.7 5.8 70 228-299 175-248 (684)
190 PF10309 DUF2414: Protein of u 94.4 0.22 4.7E-06 35.0 6.5 53 83-139 6-62 (62)
191 PF07145 PAM2: Ataxin-2 C-term 94.3 0.028 6E-07 28.9 1.4 14 11-24 4-17 (18)
192 PF04847 Calcipressin: Calcipr 94.0 0.15 3.4E-06 44.5 6.2 62 241-303 8-71 (184)
193 PF07576 BRAP2: BRCA1-associat 93.8 0.67 1.5E-05 36.8 8.9 67 79-145 10-80 (110)
194 KOG0115 RNA-binding protein p5 93.7 0.066 1.4E-06 48.2 3.5 62 83-144 32-97 (275)
195 PF03467 Smg4_UPF3: Smg-4/UPF3 93.6 0.11 2.4E-06 45.2 4.7 80 80-159 5-96 (176)
196 KOG2591 c-Mpl binding protein, 93.4 0.17 3.6E-06 50.4 6.0 71 83-155 176-248 (684)
197 KOG2135 Proteins containing th 92.8 0.083 1.8E-06 51.5 2.9 76 227-304 371-447 (526)
198 KOG4285 Mitotic phosphoprotein 92.7 0.23 5.1E-06 45.8 5.4 64 229-295 198-261 (350)
199 KOG2068 MOT2 transcription fac 92.6 0.03 6.6E-07 52.4 -0.3 75 229-303 78-163 (327)
200 KOG2253 U1 snRNP complex, subu 92.4 0.21 4.5E-06 50.9 5.2 71 226-300 38-108 (668)
201 PF11767 SET_assoc: Histone ly 91.0 1.2 2.7E-05 31.8 6.5 55 239-297 11-65 (66)
202 KOG4574 RNA-binding protein (c 91.0 0.12 2.5E-06 54.0 1.7 76 84-162 300-375 (1007)
203 PF03467 Smg4_UPF3: Smg-4/UPF3 90.9 0.25 5.3E-06 43.0 3.5 74 228-301 7-96 (176)
204 KOG1924 RhoA GTPase effector D 90.8 1 2.3E-05 46.9 8.2 16 83-98 642-657 (1102)
205 PF11767 SET_assoc: Histone ly 90.8 0.94 2E-05 32.4 5.7 49 93-145 11-59 (66)
206 PF03880 DbpA: DbpA RNA bindin 90.1 0.58 1.3E-05 34.3 4.4 61 239-300 12-74 (74)
207 PF07576 BRAP2: BRCA1-associat 89.5 2.8 6E-05 33.4 8.1 64 229-292 14-81 (110)
208 PF10567 Nab6_mRNP_bdg: RNA-re 89.1 7.4 0.00016 36.2 11.4 57 78-134 11-79 (309)
209 PF04847 Calcipressin: Calcipr 88.4 0.93 2E-05 39.6 5.1 60 95-159 8-69 (184)
210 KOG4285 Mitotic phosphoprotein 87.8 0.83 1.8E-05 42.3 4.5 58 85-145 200-257 (350)
211 KOG2318 Uncharacterized conser 87.4 2.4 5.2E-05 42.8 7.8 79 77-155 169-304 (650)
212 PF07292 NID: Nmi/IFP 35 domai 87.2 0.78 1.7E-05 34.8 3.4 23 228-250 52-74 (88)
213 KOG2068 MOT2 transcription fac 85.3 0.62 1.3E-05 43.8 2.4 63 83-145 78-151 (327)
214 KOG0804 Cytoplasmic Zn-finger 82.0 3.9 8.4E-05 40.2 6.3 64 82-145 74-141 (493)
215 KOG2318 Uncharacterized conser 79.9 8.7 0.00019 39.0 8.1 76 225-300 171-305 (650)
216 KOG2891 Surface glycoprotein [ 79.2 3.4 7.3E-05 37.8 4.7 76 228-303 149-268 (445)
217 PRK14548 50S ribosomal protein 77.8 7.9 0.00017 29.1 5.6 55 85-139 23-81 (84)
218 KOG4410 5-formyltetrahydrofola 76.4 9 0.00019 35.3 6.5 49 228-276 330-378 (396)
219 KOG2135 Proteins containing th 75.9 1.2 2.7E-05 43.7 1.0 75 78-156 368-443 (526)
220 TIGR03636 L23_arch archaeal ri 75.1 11 0.00023 27.9 5.6 54 85-138 16-73 (77)
221 KOG4019 Calcineurin-mediated s 72.6 6 0.00013 34.1 4.2 75 229-304 11-91 (193)
222 KOG2891 Surface glycoprotein [ 72.6 1.7 3.7E-05 39.7 1.1 64 82-145 149-248 (445)
223 KOG0804 Cytoplasmic Zn-finger 70.9 12 0.00027 36.8 6.4 65 228-292 74-142 (493)
224 KOG4410 5-formyltetrahydrofola 70.7 5.3 0.00012 36.8 3.7 48 83-131 331-379 (396)
225 PF03880 DbpA: DbpA RNA bindin 60.8 28 0.00062 25.2 5.4 56 92-153 11-71 (74)
226 PF15513 DUF4651: Domain of un 54.4 26 0.00057 24.6 3.9 19 97-115 9-27 (62)
227 PF07292 NID: Nmi/IFP 35 domai 51.8 8.6 0.00019 29.2 1.3 26 78-103 48-73 (88)
228 PF14111 DUF4283: Domain of un 51.5 26 0.00056 29.2 4.4 54 84-137 17-73 (153)
229 KOG4483 Uncharacterized conser 49.6 24 0.00052 34.3 4.2 56 82-138 391-446 (528)
230 PF03468 XS: XS domain; Inter 46.2 21 0.00046 28.6 2.9 44 94-137 29-75 (116)
231 KOG4019 Calcineurin-mediated s 45.8 12 0.00027 32.2 1.5 64 83-147 11-79 (193)
232 PTZ00191 60S ribosomal protein 45.0 61 0.0013 27.1 5.4 52 85-136 84-139 (145)
233 PRK14548 50S ribosomal protein 44.8 49 0.0011 24.9 4.4 55 231-285 23-81 (84)
234 TIGR03636 L23_arch archaeal ri 44.7 52 0.0011 24.3 4.5 55 231-285 16-74 (77)
235 PF03439 Spt5-NGN: Early trans 44.6 34 0.00073 25.6 3.6 34 108-141 33-66 (84)
236 KOG4483 Uncharacterized conser 43.7 34 0.00073 33.3 4.2 56 228-284 391-446 (528)
237 PF08544 GHMP_kinases_C: GHMP 42.0 1E+02 0.0022 22.4 6.0 42 97-140 37-80 (85)
238 PF11411 DNA_ligase_IV: DNA li 40.8 20 0.00043 22.1 1.5 17 92-108 19-35 (36)
239 PF14893 PNMA: PNMA 33.3 44 0.00095 32.2 3.3 52 80-131 16-74 (331)
240 PF07530 PRE_C2HC: Associated 33.2 75 0.0016 22.7 3.8 57 243-302 2-64 (68)
241 PF02714 DUF221: Domain of unk 32.4 50 0.0011 31.5 3.6 34 268-303 1-34 (325)
242 KOG4213 RNA-binding protein La 32.0 50 0.0011 28.5 3.0 53 81-138 110-169 (205)
243 PHA01732 proline-rich protein 31.8 1.2E+02 0.0025 22.8 4.5 8 108-115 63-70 (94)
244 PF03468 XS: XS domain; Inter 31.8 56 0.0012 26.2 3.2 38 240-277 29-68 (116)
245 KOG2295 C2H2 Zn-finger protein 31.2 10 0.00022 38.4 -1.4 67 228-294 231-302 (648)
246 KOG2295 C2H2 Zn-finger protein 31.0 12 0.00025 37.9 -1.0 63 82-144 231-298 (648)
247 COG5638 Uncharacterized conser 30.2 1.7E+02 0.0037 28.7 6.6 78 77-154 141-293 (622)
248 PF11823 DUF3343: Protein of u 27.4 83 0.0018 22.6 3.2 27 266-292 2-28 (73)
249 COG5178 PRP8 U5 snRNP spliceos 26.3 87 0.0019 35.1 4.3 35 80-114 70-104 (2365)
250 PF08156 NOP5NT: NOP5NT (NUC12 25.8 26 0.00056 25.1 0.3 39 97-140 27-65 (67)
251 KOG4008 rRNA processing protei 25.8 57 0.0012 29.5 2.5 36 78-113 36-71 (261)
252 COG5178 PRP8 U5 snRNP spliceos 25.6 59 0.0013 36.3 2.9 8 242-249 223-230 (2365)
253 COG5638 Uncharacterized conser 25.1 2.5E+02 0.0054 27.6 6.7 34 267-300 260-295 (622)
254 PRK08559 nusG transcription an 24.6 1.8E+02 0.0039 24.4 5.3 33 109-141 36-68 (153)
255 PF14893 PNMA: PNMA 24.3 69 0.0015 30.8 2.9 73 226-301 16-95 (331)
256 PF00403 HMA: Heavy-metal-asso 23.8 2.4E+02 0.0051 19.0 6.2 54 84-138 1-58 (62)
257 PF08734 GYD: GYD domain; Int 23.7 3.3E+02 0.0071 20.6 6.1 45 96-140 22-68 (91)
258 PRK05738 rplW 50S ribosomal pr 23.6 1.9E+02 0.0042 22.0 4.8 33 84-116 21-55 (92)
259 PF09707 Cas_Cas2CT1978: CRISP 23.5 1.5E+02 0.0033 22.3 4.1 45 82-126 25-71 (86)
260 PF08206 OB_RNB: Ribonuclease 22.2 38 0.00081 23.3 0.5 38 263-301 6-44 (58)
261 smart00596 PRE_C2HC PRE_C2HC d 21.4 1.3E+02 0.0029 21.6 3.2 55 243-300 2-62 (69)
262 KOG2187 tRNA uracil-5-methyltr 21.1 94 0.002 31.7 3.2 59 246-304 44-102 (534)
263 KOG2893 Zn finger protein [Gen 20.6 4.8E+02 0.011 23.7 7.2 6 239-244 321-326 (341)
264 COG5353 Uncharacterized protei 20.2 3.9E+02 0.0085 22.4 6.1 50 82-131 87-154 (161)
265 PF10164 DUF2367: Uncharacteri 20.0 77 0.0017 24.4 1.9 15 93-107 54-68 (98)
266 PF03439 Spt5-NGN: Early trans 20.0 1.4E+02 0.0031 22.1 3.4 36 254-289 33-68 (84)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=1.3e-29 Score=242.40 Aligned_cols=163 Identities=18% Similarity=0.318 Sum_probs=136.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCccccccccccc
Q 046223 78 STGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYG 152 (408)
Q Consensus 78 ~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~ 152 (408)
.....++|||+|||+++||++|+++|+.||+|++|+|++ +++|||||+|.++++|++|++.|||..|. ++ .
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~--gr--~ 178 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVR--NK--R 178 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccC--Cc--e
Confidence 445678999999999999999999999999999999875 45899999999999999999999998875 55 3
Q ss_pred eeccccCccccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCCCCCCCCceEE
Q 046223 153 LKNPYSSGLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDGNNQGTIV 232 (408)
Q Consensus 153 ~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~l~ 232 (408)
|++.|+... .......+||
T Consensus 179 i~V~~a~p~-------------------------------------------------------------~~~~~~~~lf 197 (346)
T TIGR01659 179 LKVSYARPG-------------------------------------------------------------GESIKDTNLY 197 (346)
T ss_pred eeeeccccc-------------------------------------------------------------ccccccceeE
Confidence 444332200 0001136899
Q ss_pred EcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCC--eEEEEEEecCCCC
Q 046223 233 VFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYG--KHVVIEFSRPGGH 305 (408)
Q Consensus 233 V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g--~~l~v~~a~~~~~ 305 (408)
|+||+..+|+++|+++|++||+|+.++ .+++.+|||||+|.+.++|++|++.||+..+.| +.|+|.+++....
T Consensus 198 V~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 198 VTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred EeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcccc
Confidence 999999999999999999999998872 367778999999999999999999999998876 7899999987643
No 2
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=2.1e-29 Score=234.72 Aligned_cols=217 Identities=23% Similarity=0.333 Sum_probs=164.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCcccccccccccee
Q 046223 80 GPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLK 154 (408)
Q Consensus 80 ~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~ 154 (408)
.....||||.||.|+.|+||.-+|++.|+|.+++++. .+||||||.|.+.++|++||+.||+.+|. .||.|.+-
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir-~GK~igvc 159 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIR-PGKLLGVC 159 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCcccc-CCCEeEEE
Confidence 3567899999999999999999999999999999886 56999999999999999999999999987 56644444
Q ss_pred ccccCccccccCCCCCCCcccCCCCh-----hHHHH------HHhhhhccCCCCCC-------------------CcCCC
Q 046223 155 NPYSSGLMLMNNDNNNNNLATGCYDN-----QVVAE------SLMIMNSYAPVLPP-------------------PARGL 204 (408)
Q Consensus 155 ~~~s~~~s~~~~~~~~~~~~~~~~~~-----~~~~~------~~~~~~~~~~~~~~-------------------~~~~~ 204 (408)
+.. .+.+++.+.+.. +++.+ .+..++.|..+... ..+.+
T Consensus 160 ~Sv-----------an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl 228 (506)
T KOG0117|consen 160 VSV-----------ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKL 228 (506)
T ss_pred Eee-----------ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhc
Confidence 322 245566555542 22222 12223333333221 12334
Q ss_pred CCCCC-ccccccCCcCCCCCC------CCCCceEEEcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHH
Q 046223 205 VAGRP-VWAQFIVPTCNAVPD------GNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRD 277 (408)
Q Consensus 205 ~~g~~-~~~~~~~p~~~~~~~------~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~ 277 (408)
..|+. +|.+.....|+.... ....+.|||+||+.++|+|.|+++|.+||.|+.|+ +-+.||||.|.+.++
T Consensus 229 ~~g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVk---k~rDYaFVHf~eR~d 305 (506)
T KOG0117|consen 229 MPGKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVK---KPRDYAFVHFAERED 305 (506)
T ss_pred cCCceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEee---cccceeEEeecchHH
Confidence 44443 355555555544221 23467899999999999999999999999999986 347899999999999
Q ss_pred HHHHHHHhCCceeCCeEEEEEEecCCCCCCCccc
Q 046223 278 AAKALKEMNGQEIYGKHVVIEFSRPGGHSKKFFY 311 (408)
Q Consensus 278 A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~ 311 (408)
|.+|++.+||++|+|..|.|.+|+|...++..+.
T Consensus 306 avkAm~~~ngkeldG~~iEvtLAKP~~k~k~~r~ 339 (506)
T KOG0117|consen 306 AVKAMKETNGKELDGSPIEVTLAKPVDKKKKERK 339 (506)
T ss_pred HHHHHHHhcCceecCceEEEEecCChhhhccchh
Confidence 9999999999999999999999999876655543
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=8.1e-29 Score=241.24 Aligned_cols=76 Identities=24% Similarity=0.402 Sum_probs=71.3
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCC
Q 046223 229 GTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPG 303 (408)
Q Consensus 229 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 303 (408)
.+|||+||+.++++++|+++|++||.|.+++ .++.++|||||+|.+.++|.+|++.|||..|+||.|+|.|+..+
T Consensus 270 ~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~ 349 (352)
T TIGR01661 270 YCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNK 349 (352)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCC
Confidence 4799999999999999999999999999983 37889999999999999999999999999999999999999776
Q ss_pred C
Q 046223 304 G 304 (408)
Q Consensus 304 ~ 304 (408)
.
T Consensus 350 ~ 350 (352)
T TIGR01661 350 A 350 (352)
T ss_pred C
Confidence 5
No 4
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.96 E-value=4.5e-28 Score=243.32 Aligned_cols=170 Identities=17% Similarity=0.307 Sum_probs=137.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCcccccccccccee
Q 046223 80 GPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLK 154 (408)
Q Consensus 80 ~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~ 154 (408)
...++|||+||+++++|++|+++|++||+|.+|++.+ +++|||||+|.+.++|++|++.|||..|. ||.|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~--GR~IkV~ 182 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLG--GRNIKVG 182 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEe--cceeeec
Confidence 3567899999999999999999999999999999875 57999999999999999999999998876 6743333
Q ss_pred ccccCccccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCCCCCCCCceEEEc
Q 046223 155 NPYSSGLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDGNNQGTIVVF 234 (408)
Q Consensus 155 ~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~l~V~ 234 (408)
..... . . ....... .........+|||+
T Consensus 183 --rp~~~--p-----------------------------------~------a~~~~~~-------~~~~~~~~~rLfVg 210 (612)
T TIGR01645 183 --RPSNM--P-----------------------------------Q------AQPIIDM-------VQEEAKKFNRIYVA 210 (612)
T ss_pred --ccccc--c-----------------------------------c------ccccccc-------ccccccccceEEee
Confidence 11100 0 0 0000000 00111234799999
Q ss_pred CCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCC
Q 046223 235 NLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPG 303 (408)
Q Consensus 235 nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 303 (408)
||+.++++++|+++|+.||.|.+++ .++.++|||||+|.+.++|.+|++.|||..|+|+.|+|.++..+
T Consensus 211 nLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~p 284 (612)
T TIGR01645 211 SVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTP 284 (612)
T ss_pred cCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Confidence 9999999999999999999999883 35678999999999999999999999999999999999999764
No 5
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.96 E-value=9e-27 Score=233.73 Aligned_cols=210 Identities=19% Similarity=0.263 Sum_probs=145.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee----cCccEEEEEECCHHHHHHHHHHhcCccccccccccceecc
Q 046223 81 PTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNP 156 (408)
Q Consensus 81 ~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~ 156 (408)
...+|||+|||.+++|++|+++|++||.|.+|++++ +++|||||+|.+.++|++||+.||+..|. .++.+ .+.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~-~Gr~l--~V~ 133 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIR-PGRLL--GVC 133 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeec-CCccc--ccc
Confidence 357999999999999999999999999999999875 57999999999999999999999998874 23422 222
Q ss_pred ccCccccccCCCCCCCcccCCCChhHHHHHHhh-hhc----------cCCCCCC-C------------------------
Q 046223 157 YSSGLMLMNNDNNNNNLATGCYDNQVVAESLMI-MNS----------YAPVLPP-P------------------------ 200 (408)
Q Consensus 157 ~s~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----------~~~~~~~-~------------------------ 200 (408)
.+. .+.++..+.+......+.+.. ... +..+... .
T Consensus 134 ~S~---------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~ 204 (578)
T TIGR01648 134 ISV---------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMP 204 (578)
T ss_pred ccc---------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhc
Confidence 211 123333444332222221111 000 0000000 0
Q ss_pred cCCCCCCCCccccccCCcCCCCC-CCCCCceEEEcCCCCCCcHHHHHHHHhcC--CCceeeccCCCCccEEEEEECCHHH
Q 046223 201 ARGLVAGRPVWAQFIVPTCNAVP-DGNNQGTIVVFNLDSGVSSSTLKEIFQAF--GPVKELRETPLKKHQRFIEFYDVRD 277 (408)
Q Consensus 201 ~~~~~~g~~~~~~~~~p~~~~~~-~~~~~~~l~V~nLp~~~t~~~L~~~F~~~--G~v~~v~~~~~~~g~afV~F~~~~~ 277 (408)
.+-.+.|+.+.+....+.....+ .....++|||+||+.++++++|+++|++| |.|++|. ..++||||+|++.++
T Consensus 205 gki~l~Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~---~~rgfAFVeF~s~e~ 281 (578)
T TIGR01648 205 GRIQLWGHVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVK---KIRDYAFVHFEDRED 281 (578)
T ss_pred cceEecCceEEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEE---eecCeEEEEeCCHHH
Confidence 00011222222222222221111 12345789999999999999999999999 9999986 347899999999999
Q ss_pred HHHHHHHhCCceeCCeEEEEEEecCCCC
Q 046223 278 AAKALKEMNGQEIYGKHVVIEFSRPGGH 305 (408)
Q Consensus 278 A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 305 (408)
|++|++.|||.+|+|+.|+|.|+++...
T Consensus 282 A~kAi~~lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 282 AVKAMDELNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred HHHHHHHhCCCEECCEEEEEEEccCCCc
Confidence 9999999999999999999999988654
No 6
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=7.5e-28 Score=211.03 Aligned_cols=176 Identities=21% Similarity=0.375 Sum_probs=143.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCccccccccccceec
Q 046223 81 PTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKN 155 (408)
Q Consensus 81 ~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~ 155 (408)
..-.|||+.|..+++.++|++.|.+||+|.+.+++| ++||||||.|.+.++|++||..|||+-|. +| .||-
T Consensus 61 ~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG--~R--~IRT 136 (321)
T KOG0148|consen 61 QHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLG--RR--TIRT 136 (321)
T ss_pred cceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeec--cc--eeec
Confidence 355799999999999999999999999999999988 78999999999999999999999998875 66 4565
Q ss_pred cccCccccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCc--cccccCCcCCCCCCCCCCceEEE
Q 046223 156 PYSSGLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPV--WAQFIVPTCNAVPDGNNQGTIVV 233 (408)
Q Consensus 156 ~~s~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~p~~~~~~~~~~~~~l~V 233 (408)
.|+..+ .. ..++.++ ...+ .....++++|||
T Consensus 137 NWATRK----------------p~------------------------e~n~~~ltfdeV~-------NQssp~NtsVY~ 169 (321)
T KOG0148|consen 137 NWATRK----------------PS------------------------EMNGKPLTFDEVY-------NQSSPDNTSVYV 169 (321)
T ss_pred cccccC----------------cc------------------------ccCCCCccHHHHh-------ccCCCCCceEEe
Confidence 555422 11 0011111 0000 011234699999
Q ss_pred cCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCCCCCCC
Q 046223 234 FNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGGHSKK 308 (408)
Q Consensus 234 ~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~ 308 (408)
|||+..+||++|++.|+.||.|.+||.. +.+||+||.|++.|+|.+||..+||++++|..+++.|-+.......
T Consensus 170 G~I~~~lte~~mr~~Fs~fG~I~EVRvF-k~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~~~~ 243 (321)
T KOG0148|consen 170 GNIASGLTEDLMRQTFSPFGPIQEVRVF-KDQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDDGIN 243 (321)
T ss_pred CCcCccccHHHHHHhcccCCcceEEEEe-cccceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCCCCCC
Confidence 9999999999999999999999999854 6799999999999999999999999999999999999987764433
No 7
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=1.3e-26 Score=215.18 Aligned_cols=168 Identities=21% Similarity=0.361 Sum_probs=137.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCccccccccccc
Q 046223 78 STGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYG 152 (408)
Q Consensus 78 ~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~ 152 (408)
.+.+.-.||||.||..++|.||+++|++||.|.+|.+++ .++|||||.|.+.++|.+|+.+|++++.. -|-...
T Consensus 30 ~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktl-pG~~~p 108 (510)
T KOG0144|consen 30 PDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTL-PGMHHP 108 (510)
T ss_pred CCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhccccc-CCCCcc
Confidence 345667899999999999999999999999999999987 45999999999999999999999986543 222233
Q ss_pred eeccccCccccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCCCCCCCCceEE
Q 046223 153 LKNPYSSGLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDGNNQGTIV 232 (408)
Q Consensus 153 ~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~l~ 232 (408)
+.+-|++.. .+.-...++||
T Consensus 109 vqvk~Ad~E------------------------------------------------------------~er~~~e~KLF 128 (510)
T KOG0144|consen 109 VQVKYADGE------------------------------------------------------------RERIVEERKLF 128 (510)
T ss_pred eeecccchh------------------------------------------------------------hhccccchhhh
Confidence 444332200 00001248899
Q ss_pred EcCCCCCCcHHHHHHHHhcCCCceee----ccCCCCccEEEEEECCHHHHHHHHHHhCCc-eeCC--eEEEEEEecCCCC
Q 046223 233 VFNLDSGVSSSTLKEIFQAFGPVKEL----RETPLKKHQRFIEFYDVRDAAKALKEMNGQ-EIYG--KHVVIEFSRPGGH 305 (408)
Q Consensus 233 V~nLp~~~t~~~L~~~F~~~G~v~~v----~~~~~~~g~afV~F~~~~~A~~A~~~l~g~-~~~g--~~l~v~~a~~~~~ 305 (408)
||-|+..+||.|++++|++||.|+++ ...+.+||||||+|.+.|.|..|++.|||. ++.| ..|.|+||++++.
T Consensus 129 vg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkd 208 (510)
T KOG0144|consen 129 VGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKD 208 (510)
T ss_pred hhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCC
Confidence 99999999999999999999999999 367789999999999999999999999997 5555 5899999998765
Q ss_pred C
Q 046223 306 S 306 (408)
Q Consensus 306 ~ 306 (408)
+
T Consensus 209 k 209 (510)
T KOG0144|consen 209 K 209 (510)
T ss_pred c
Confidence 5
No 8
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.94 E-value=2e-25 Score=224.96 Aligned_cols=197 Identities=20% Similarity=0.262 Sum_probs=140.2
Q ss_pred CCCCCCEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceecc
Q 046223 78 STGPTRTLVLSYVPG-DVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNP 156 (408)
Q Consensus 78 ~~~~~rtlfV~nLp~-~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~ 156 (408)
...++.+|||+||+. .+|+++|+++|+.||.|..|++++..+|||||+|.+.++|++|++.|||..|. |+ .|++.
T Consensus 271 ~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~--g~--~l~v~ 346 (481)
T TIGR01649 271 GGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLF--GK--PLRVC 346 (481)
T ss_pred CCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEC--Cc--eEEEE
Confidence 345788999999998 69999999999999999999999877899999999999999999999998876 66 45555
Q ss_pred ccCccccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcC-CCCCCCCCCceEEEcC
Q 046223 157 YSSGLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTC-NAVPDGNNQGTIVVFN 235 (408)
Q Consensus 157 ~s~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~-~~~~~~~~~~~l~V~n 235 (408)
++....+..... +..++... . ...+.. .... .+..+.. ....-...+.+|||+|
T Consensus 347 ~s~~~~~~~~~~-------~~~~~~~~----~-~~d~~~--~~~~-----------r~~~~~~~~~~~~~~ps~~L~v~N 401 (481)
T TIGR01649 347 PSKQQNVQPPRE-------GQLDDGLT----S-YKDYSS--SRNH-----------RFKKPGSANKNNIQPPSATLHLSN 401 (481)
T ss_pred EcccccccCCCC-------CcCcCCCc----c-cccccC--Cccc-----------cCCCcccccccccCCCCcEEEEec
Confidence 554332111000 00000000 0 000000 0000 0000000 0000112458999999
Q ss_pred CCCCCcHHHHHHHHhcCCC--ceeeccC---CCCccEEEEEECCHHHHHHHHHHhCCceeCCeE------EEEEEecCC
Q 046223 236 LDSGVSSSTLKEIFQAFGP--VKELRET---PLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKH------VVIEFSRPG 303 (408)
Q Consensus 236 Lp~~~t~~~L~~~F~~~G~--v~~v~~~---~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~------l~v~~a~~~ 303 (408)
||.++++++|+++|+.||. |..++.. ...+++|||+|.+.++|.+|+..|||..|.|+. |+|.|++++
T Consensus 402 Lp~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 402 IPLSVSEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred CCCCCCHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 9999999999999999998 7766322 224799999999999999999999999999985 999999764
No 9
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.94 E-value=7.3e-26 Score=228.19 Aligned_cols=173 Identities=23% Similarity=0.260 Sum_probs=133.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceeccccCc
Q 046223 81 PTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPYSSG 160 (408)
Q Consensus 81 ~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~~s~~ 160 (408)
++++|||+|||+++||++|+++|+.||.|.+|.+++ ++|||||+|.+.++|++|++.|+...+.+.|+ .+++.|+..
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~-~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~--~l~v~~s~~ 77 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP-GKRQALVEFEDEESAKACVNFATSVPIYIRGQ--PAFFNYSTS 77 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC-CCCEEEEEeCchHHHHHHHHHhhcCCceEcCe--EEEEEecCC
Confidence 589999999999999999999999999999998884 78999999999999999999864433444577 466656542
Q ss_pred cccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCCCCCCCCceEEEcCCCCCC
Q 046223 161 LMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDGNNQGTIVVFNLDSGV 240 (408)
Q Consensus 161 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~l~V~nLp~~~ 240 (408)
..+... . .. . ..........+|||+||++.+
T Consensus 78 ~~~~~~----------~----------------------------~~-----~------~~~~~~~~~~~v~v~nl~~~v 108 (481)
T TIGR01649 78 QEIKRD----------G----------------------------NS-----D------FDSAGPNKVLRVIVENPMYPI 108 (481)
T ss_pred cccccC----------C----------------------------CC-----c------ccCCCCCceEEEEEcCCCCCC
Confidence 110000 0 00 0 000001123579999999999
Q ss_pred cHHHHHHHHhcCCCceeeccC-CCCccEEEEEECCHHHHHHHHHHhCCceeCC--eEEEEEEecCCCC
Q 046223 241 SSSTLKEIFQAFGPVKELRET-PLKKHQRFIEFYDVRDAAKALKEMNGQEIYG--KHVVIEFSRPGGH 305 (408)
Q Consensus 241 t~~~L~~~F~~~G~v~~v~~~-~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g--~~l~v~~a~~~~~ 305 (408)
|+++|+++|+.||.|.+|... ....++|||+|.+.++|.+|++.|||..|.| +.|+|+|++....
T Consensus 109 t~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~l 176 (481)
T TIGR01649 109 TLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTRL 176 (481)
T ss_pred CHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCCCc
Confidence 999999999999999998432 2334799999999999999999999999964 5899999987553
No 10
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.94 E-value=8.3e-26 Score=227.65 Aligned_cols=171 Identities=25% Similarity=0.326 Sum_probs=135.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCccccccccccc
Q 046223 78 STGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYG 152 (408)
Q Consensus 78 ~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~ 152 (408)
.+...++|||+|||.++++++|+++|++||.|..|++++ +++|||||+|.+.++|++|+. |+|..|. |+.|
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~--g~~i- 160 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLL--GRPI- 160 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEEC--Ceee-
Confidence 456789999999999999999999999999999999975 469999999999999999996 8998876 5533
Q ss_pred eeccccCccccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCCCCCCCCceEE
Q 046223 153 LKNPYSSGLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDGNNQGTIV 232 (408)
Q Consensus 153 ~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~l~ 232 (408)
.+.++... ..... . ... .. ........+||
T Consensus 161 -~v~~~~~~-------------~~~~~----------------------~---~~~------~~-----~~~~p~~~~l~ 190 (457)
T TIGR01622 161 -IVQSSQAE-------------KNRAA----------------------K---AAT------HQ-----PGDIPNFLKLY 190 (457)
T ss_pred -EEeecchh-------------hhhhh----------------------h---ccc------cc-----CCCCCCCCEEE
Confidence 33222100 00000 0 000 00 00011258999
Q ss_pred EcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q 046223 233 VFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRP 302 (408)
Q Consensus 233 V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 302 (408)
|+||+..+++++|+++|+.||.|..|. .++.++|||||+|.+.++|.+|++.|||..|.|+.|+|.|+..
T Consensus 191 v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 191 VGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred EcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 999999999999999999999999883 3457899999999999999999999999999999999999863
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.94 E-value=8.3e-26 Score=233.07 Aligned_cols=158 Identities=23% Similarity=0.294 Sum_probs=133.0
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCccccccccccceecccc
Q 046223 84 TLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPYS 158 (408)
Q Consensus 84 tlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~~s 158 (408)
+|||+|||.++||++|+++|++||.|.+|++.+ +++|||||+|.+.++|++|++.||+..|. |+ .+++.|+
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~--gk--~i~i~~s 77 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLG--GK--PIRIMWS 77 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC--Ce--eEEeecc
Confidence 799999999999999999999999999999975 46899999999999999999999998776 66 3455443
Q ss_pred CccccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCCCCCCCCceEEEcCCCC
Q 046223 159 SGLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDGNNQGTIVVFNLDS 238 (408)
Q Consensus 159 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~l~V~nLp~ 238 (408)
... + ........+|||+||+.
T Consensus 78 ~~~-------------------------------------------------------~----~~~~~~~~~vfV~nLp~ 98 (562)
T TIGR01628 78 QRD-------------------------------------------------------P----SLRRSGVGNIFVKNLDK 98 (562)
T ss_pred ccc-------------------------------------------------------c----cccccCCCceEEcCCCc
Confidence 200 0 00011236799999999
Q ss_pred CCcHHHHHHHHhcCCCceeec----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCCC
Q 046223 239 GVSSSTLKEIFQAFGPVKELR----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGG 304 (408)
Q Consensus 239 ~~t~~~L~~~F~~~G~v~~v~----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 304 (408)
++++++|+++|++||.|.+|+ ..++++|||||+|.+.++|.+|++.|||..+.|+.|.|.....+.
T Consensus 99 ~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~ 168 (562)
T TIGR01628 99 SVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKH 168 (562)
T ss_pred cCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEecccccc
Confidence 999999999999999998873 356789999999999999999999999999999999998765543
No 12
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.93 E-value=1.7e-24 Score=221.07 Aligned_cols=193 Identities=16% Similarity=0.199 Sum_probs=135.4
Q ss_pred CCCCCCCCCCEEEEcCCCCCCCHHHHHHHhhcc------------CCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcC
Q 046223 74 LPPPSTGPTRTLVLSYVPGDVSETIVRRDLEVF------------GEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIRE 141 (408)
Q Consensus 74 ~p~~~~~~~rtlfV~nLp~~vte~~L~~~F~~~------------G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng 141 (408)
..+......++|||||||+++|+++|+++|..+ +.|..+.+. +.+|||||+|.+.++|.+|| .|+|
T Consensus 167 ~~~~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~-~~kg~afVeF~~~e~A~~Al-~l~g 244 (509)
T TIGR01642 167 YQQQATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN-KEKNFAFLEFRTVEEATFAM-ALDS 244 (509)
T ss_pred cCccCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC-CCCCEEEEEeCCHHHHhhhh-cCCC
Confidence 344567788999999999999999999999985 244445444 57999999999999999999 5999
Q ss_pred ccccccccccceeccccCccccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCC
Q 046223 142 QHMQLQQQSYGLKNPYSSGLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNA 221 (408)
Q Consensus 142 ~~i~~~gr~l~~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~ 221 (408)
..|. |+.|.+... .... . ..... +. ..... ..........+. ..
T Consensus 245 ~~~~--g~~l~v~r~--~~~~-~----------~~~~~----------------~~-~~~~~---~~~~~~~~~~~~-~~ 288 (509)
T TIGR01642 245 IIYS--NVFLKIRRP--HDYI-P----------VPQIT----------------PE-VSQKN---PDDNAKNVEKLV-NS 288 (509)
T ss_pred eEee--CceeEecCc--cccC-C----------ccccC----------------CC-CCCCC---Cccccccccccc-cc
Confidence 7765 564444321 0000 0 00000 00 00000 000000000000 00
Q ss_pred CCCCCCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 046223 222 VPDGNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVV 296 (408)
Q Consensus 222 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~ 296 (408)
........+|||+|||..+++++|+++|+.||.|..+. .++.++|||||+|.+.++|.+|++.|||..|+|+.|.
T Consensus 289 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~ 368 (509)
T TIGR01642 289 TTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLH 368 (509)
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 11123458999999999999999999999999998872 3677899999999999999999999999999999999
Q ss_pred EEEecCCC
Q 046223 297 IEFSRPGG 304 (408)
Q Consensus 297 v~~a~~~~ 304 (408)
|.++....
T Consensus 369 v~~a~~~~ 376 (509)
T TIGR01642 369 VQRACVGA 376 (509)
T ss_pred EEECccCC
Confidence 99997543
No 13
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.93 E-value=4.7e-25 Score=227.46 Aligned_cols=223 Identities=15% Similarity=0.212 Sum_probs=146.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee----cCccEEEEEECCHHHHHHHHHHhcCccccccccccceec
Q 046223 80 GPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKN 155 (408)
Q Consensus 80 ~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~ 155 (408)
....+|||+||+.++++++|+++|++||.|.+|++.. +++|||||+|.+.++|++|++.|||..+. ++.+.+..
T Consensus 86 ~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~--~~~i~v~~ 163 (562)
T TIGR01628 86 SGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLN--DKEVYVGR 163 (562)
T ss_pred cCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEec--CceEEEec
Confidence 3456899999999999999999999999999998875 46999999999999999999999998765 55433322
Q ss_pred cccCccccccCCCCCCCcccCCCChhHHHHHHhhh-hccCCC-------C-CCC----------------------cCCC
Q 046223 156 PYSSGLMLMNNDNNNNNLATGCYDNQVVAESLMIM-NSYAPV-------L-PPP----------------------ARGL 204 (408)
Q Consensus 156 ~~s~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~-~~~----------------------~~~~ 204 (408)
.................+..+.+......+.+... ..+..- . ... ....
T Consensus 164 ~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~ 243 (562)
T TIGR01628 164 FIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKK 243 (562)
T ss_pred cccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcE
Confidence 11110000000111122223333322222211111 001000 0 000 0000
Q ss_pred CC----CCCccccccCCcCCC--------------CCCCCCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec----cCC
Q 046223 205 VA----GRPVWAQFIVPTCNA--------------VPDGNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR----ETP 262 (408)
Q Consensus 205 ~~----g~~~~~~~~~p~~~~--------------~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~----~~~ 262 (408)
.. |+.+.+......... ........+|||+||+..+++++|+++|++||.|.+++ .++
T Consensus 244 i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g 323 (562)
T TIGR01628 244 IGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKG 323 (562)
T ss_pred ecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCC
Confidence 11 221111111110000 00123457899999999999999999999999999883 467
Q ss_pred CCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCCC
Q 046223 263 LKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGG 304 (408)
Q Consensus 263 ~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 304 (408)
.++|||||+|.+.++|.+|++.|||+.++|+.|.|.++..+.
T Consensus 324 ~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~ 365 (562)
T TIGR01628 324 VSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKE 365 (562)
T ss_pred CcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcH
Confidence 889999999999999999999999999999999999998654
No 14
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.92 E-value=7.9e-25 Score=181.68 Aligned_cols=164 Identities=20% Similarity=0.248 Sum_probs=138.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCcccccccccccee
Q 046223 80 GPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLK 154 (408)
Q Consensus 80 ~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~ 154 (408)
....|||||||+..++++.|+++|-+.|.|..+++.+ ..+|||||+|.++|+|+-|++.||..++. ||+|++.
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLY--grpIrv~ 84 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLY--GRPIRVN 84 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhc--CceeEEE
Confidence 4567999999999999999999999999999999876 46999999999999999999999976665 7854444
Q ss_pred ccccCccccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCCCCCCCCceEEEc
Q 046223 155 NPYSSGLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDGNNQGTIVVF 234 (408)
Q Consensus 155 ~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~l~V~ 234 (408)
.. . . .......+.+|||+
T Consensus 85 ka--s-----------------~-------------------------------------------~~~nl~vganlfvg 102 (203)
T KOG0131|consen 85 KA--S-----------------A-------------------------------------------HQKNLDVGANLFVG 102 (203)
T ss_pred ec--c-----------------c-------------------------------------------cccccccccccccc
Confidence 31 0 0 00011224789999
Q ss_pred CCCCCCcHHHHHHHHhcCCCceee------ccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCCCCCC
Q 046223 235 NLDSGVSSSTLKEIFQAFGPVKEL------RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGGHSK 307 (408)
Q Consensus 235 nLp~~~t~~~L~~~F~~~G~v~~v------~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 307 (408)
||...++|..|.+.|+.||.+... ..++..+|||||.|.+.|.+.+|+..|||..++.++|.|.++..+..+.
T Consensus 103 NLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 103 NLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred ccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCCCc
Confidence 999999999999999999988764 2567889999999999999999999999999999999999998766543
No 15
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=3.7e-24 Score=186.71 Aligned_cols=160 Identities=23% Similarity=0.396 Sum_probs=135.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCcccccccccccee
Q 046223 80 GPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLK 154 (408)
Q Consensus 80 ~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~ 154 (408)
....+|.|.-||.++|+|||+.+|...|+|++++++| .+.||+||.|.+++||++||..|||-. ++.| .++
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLr--LQ~K--TIK 114 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLR--LQNK--TIK 114 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhccee--eccc--eEE
Confidence 3456799999999999999999999999999999988 569999999999999999999999955 4567 456
Q ss_pred ccccCccccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCCCCCCCCceEEEc
Q 046223 155 NPYSSGLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDGNNQGTIVVF 234 (408)
Q Consensus 155 ~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~l~V~ 234 (408)
|.|+.+.+ +......|||+
T Consensus 115 VSyARPSs-------------------------------------------------------------~~Ik~aNLYvS 133 (360)
T KOG0145|consen 115 VSYARPSS-------------------------------------------------------------DSIKDANLYVS 133 (360)
T ss_pred EEeccCCh-------------------------------------------------------------hhhcccceEEe
Confidence 65544211 11223789999
Q ss_pred CCCCCCcHHHHHHHHhcCCCceee-----ccCCCCccEEEEEECCHHHHHHHHHHhCCceeCC--eEEEEEEecCCC
Q 046223 235 NLDSGVSSSTLKEIFQAFGPVKEL-----RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYG--KHVVIEFSRPGG 304 (408)
Q Consensus 235 nLp~~~t~~~L~~~F~~~G~v~~v-----~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g--~~l~v~~a~~~~ 304 (408)
+||..+|..||+++|+.||.|... ..++.++|.+||.|+..++|+.|++.|||.+-.| ..|.|+|+....
T Consensus 134 GlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPs 210 (360)
T KOG0145|consen 134 GLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPS 210 (360)
T ss_pred cCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcc
Confidence 999999999999999999998655 3578899999999999999999999999987766 589999997654
No 16
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.91 E-value=7.9e-23 Score=208.80 Aligned_cols=187 Identities=19% Similarity=0.275 Sum_probs=131.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCcccccccccccee
Q 046223 80 GPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLK 154 (408)
Q Consensus 80 ~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~ 154 (408)
...++|||+|||.++|+++|+++|+.||.|..+.+++ .++|||||+|.+.++|..|++.|||..|. |+. |.
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~--~~~--l~ 368 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTG--DNK--LH 368 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC--CeE--EE
Confidence 3468999999999999999999999999999998875 36999999999999999999999998876 664 44
Q ss_pred ccccCccccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCCCCCCCCceEEEc
Q 046223 155 NPYSSGLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDGNNQGTIVVF 234 (408)
Q Consensus 155 ~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~l~V~ 234 (408)
+.++...... .......+.... .....+ ..............+|+|.
T Consensus 369 v~~a~~~~~~----~~~~~~~~~~~~---------------------~~~~~~--------~~~~~~~~~~~~s~v~~l~ 415 (509)
T TIGR01642 369 VQRACVGANQ----ATIDTSNGMAPV---------------------TLLAKA--------LSQSILQIGGKPTKVVQLT 415 (509)
T ss_pred EEECccCCCC----CCcccccccccc---------------------cccccc--------chhhhccccCCCceEEEec
Confidence 4333210000 000000000000 000000 0000000112345889999
Q ss_pred CCCCC----------CcHHHHHHHHhcCCCceeeccC--------CCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 046223 235 NLDSG----------VSSSTLKEIFQAFGPVKELRET--------PLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVV 296 (408)
Q Consensus 235 nLp~~----------~t~~~L~~~F~~~G~v~~v~~~--------~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~ 296 (408)
||... ...++|+++|++||.|+.|... +.+.|+|||+|.+.++|++|+..|||.+|+|+.|.
T Consensus 416 N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~ 495 (509)
T TIGR01642 416 NLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVV 495 (509)
T ss_pred cCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 99642 1236899999999999998421 24578999999999999999999999999999999
Q ss_pred EEEecCC
Q 046223 297 IEFSRPG 303 (408)
Q Consensus 297 v~~a~~~ 303 (408)
|.|....
T Consensus 496 ~~~~~~~ 502 (509)
T TIGR01642 496 AAFYGED 502 (509)
T ss_pred EEEeCHH
Confidence 9998653
No 17
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.90 E-value=5.8e-24 Score=188.47 Aligned_cols=147 Identities=22% Similarity=0.370 Sum_probs=129.0
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceeccccCcccc
Q 046223 84 TLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPYSSGLML 163 (408)
Q Consensus 84 tlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~~s~~~s~ 163 (408)
.|||||||.++++.+|+.+|++||+|.++.|+ |.||||..++...|+.||+.|+|..|+ |. .|.|.-++.
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv---KNYgFVHiEdktaaedairNLhgYtLh--g~--nInVeaSks--- 73 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIV---KNYGFVHIEDKTAAEDAIRNLHGYTLH--GV--NINVEASKS--- 73 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeee---cccceEEeecccccHHHHhhcccceec--ce--EEEEEeccc---
Confidence 58999999999999999999999999999998 789999999999999999999998887 43 233321110
Q ss_pred ccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCCCCCCCCceEEEcCCCCCCcHH
Q 046223 164 MNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDGNNQGTIVVFNLDSGVSSS 243 (408)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~l~V~nLp~~~t~~ 243 (408)
+.....+|+|+||...++..
T Consensus 74 ------------------------------------------------------------Ksk~stkl~vgNis~tctn~ 93 (346)
T KOG0109|consen 74 ------------------------------------------------------------KSKASTKLHVGNISPTCTNQ 93 (346)
T ss_pred ------------------------------------------------------------cCCCccccccCCCCccccCH
Confidence 01224889999999999999
Q ss_pred HHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCC
Q 046223 244 TLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPG 303 (408)
Q Consensus 244 ~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 303 (408)
||++.|++||.|.+++ .-++|+||.|+-.++|..|++.|++++|.|++++|+++.++
T Consensus 94 ElRa~fe~ygpviecd---ivkdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 94 ELRAKFEKYGPVIECD---IVKDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred HHhhhhcccCCceeee---eecceeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 9999999999999986 45899999999999999999999999999999999998754
No 18
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=5.3e-23 Score=196.18 Aligned_cols=184 Identities=20% Similarity=0.251 Sum_probs=138.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCccccccccccceecc
Q 046223 82 TRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNP 156 (408)
Q Consensus 82 ~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~ 156 (408)
..||||++||++++.++|.++|+.+|.|..+.++. .++|||||.|.-.+|+++|++.+++..|. || .+++.
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~--Gr--~l~v~ 80 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFE--GR--ILNVD 80 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCccc--ce--ecccc
Confidence 37999999999999999999999999999988775 56999999999999999999999998876 66 35555
Q ss_pred ccCccccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCCCCCCCCceEEEcCC
Q 046223 157 YSSGLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDGNNQGTIVVFNL 236 (408)
Q Consensus 157 ~s~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~l~V~nL 236 (408)
++.++--.. . ..+-..+ +. . .+ .....+. ...-......|.|.||
T Consensus 81 ~A~~R~r~e------~--~~~~e~~----~v--------------e-----K~--~~q~~~~--k~~v~~~k~rLIIRNL 125 (678)
T KOG0127|consen 81 PAKKRARSE------E--VEKGENK----AV--------------E-----KP--IEQKRPT--KAKVDLPKWRLIIRNL 125 (678)
T ss_pred cccccccch------h--cccccch----hh--------------h-----cc--cccCCcc--hhhccCccceEEeecC
Confidence 444221000 0 0000000 00 0 00 0000000 0000122578999999
Q ss_pred CCCCcHHHHHHHHhcCCCceee----ccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCCC
Q 046223 237 DSGVSSSTLKEIFQAFGPVKEL----RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGG 304 (408)
Q Consensus 237 p~~~t~~~L~~~F~~~G~v~~v----~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 304 (408)
|+.+.+.+|+.+|+.||.|.+| +..++-+|||||+|.+..+|.+|++.+||.+|+||.|-|.||-.+.
T Consensus 126 Pf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd 197 (678)
T KOG0127|consen 126 PFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKD 197 (678)
T ss_pred CcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccc
Confidence 9999999999999999999999 4566678999999999999999999999999999999999997654
No 19
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.89 E-value=2e-21 Score=195.78 Aligned_cols=217 Identities=18% Similarity=0.238 Sum_probs=137.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCccccccccccceecc
Q 046223 82 TRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNP 156 (408)
Q Consensus 82 ~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~ 156 (408)
.++|||+|||.++||++|+++|+.||.|..|.+.+ +++|||||+|.+.++|.+|++.|||..|. |+ .|+|.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~--g~--~i~v~ 261 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELA--GR--PIKVG 261 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEEC--CE--EEEEE
Confidence 78999999999999999999999999999998875 45899999999999999999999997765 67 45565
Q ss_pred ccCccccccCCCCC----------CCcccCCCChhHHHHHHhhhhcc-CCCCCCCcC-----------CCCC-CCC----
Q 046223 157 YSSGLMLMNNDNNN----------NNLATGCYDNQVVAESLMIMNSY-APVLPPPAR-----------GLVA-GRP---- 209 (408)
Q Consensus 157 ~s~~~s~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----------~~~~-g~~---- 209 (408)
|+.... ....... ..............+.+...... ....++... +... ..+
T Consensus 262 ~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (457)
T TIGR01622 262 YAQDST-YLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYA 340 (457)
T ss_pred EccCCC-ccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcccccccccccccccccc
Confidence 643111 0000000 00000000000000000000000 000000000 0000 000
Q ss_pred --ccccccCCcCCC-CCCCCCCceEEEcCCCCCCc----------HHHHHHHHhcCCCceeeccC-CCCccEEEEEECCH
Q 046223 210 --VWAQFIVPTCNA-VPDGNNQGTIVVFNLDSGVS----------SSTLKEIFQAFGPVKELRET-PLKKHQRFIEFYDV 275 (408)
Q Consensus 210 --~~~~~~~p~~~~-~~~~~~~~~l~V~nLp~~~t----------~~~L~~~F~~~G~v~~v~~~-~~~~g~afV~F~~~ 275 (408)
.......+.... ........+|+|.||-...+ .+||++.|++||.|+.|... ....|++||+|.+.
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~ 420 (457)
T TIGR01622 341 TGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSV 420 (457)
T ss_pred ccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCH
Confidence 000000000000 00224568999999955433 36899999999999998543 67789999999999
Q ss_pred HHHHHHHHHhCCceeCCeEEEEEEecCC
Q 046223 276 RDAAKALKEMNGQEIYGKHVVIEFSRPG 303 (408)
Q Consensus 276 ~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 303 (408)
++|.+|++.|||++|+|+.|.|.|....
T Consensus 421 e~A~~A~~~lnGr~f~gr~i~~~~~~~~ 448 (457)
T TIGR01622 421 DAALAAFQALNGRYFGGKMITAAFVVND 448 (457)
T ss_pred HHHHHHHHHhcCcccCCeEEEEEEEcHH
Confidence 9999999999999999999999998653
No 20
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=7e-22 Score=172.55 Aligned_cols=222 Identities=19% Similarity=0.215 Sum_probs=144.7
Q ss_pred CCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCccccc
Q 046223 72 VPLPPPSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQL 146 (408)
Q Consensus 72 ~~~p~~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~ 146 (408)
...|..+.-...+|||++||..+|..||+.+|++||.|..-+|.- .+||.|||.|...++|++||+.|||+.-.+
T Consensus 117 yARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g 196 (360)
T KOG0145|consen 117 YARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 196 (360)
T ss_pred eccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCC
Confidence 344545555667899999999999999999999999887755432 579999999999999999999999987653
Q ss_pred cccccceeccccCccccccCCCC-------CCCcccCCCChhHHHHHHhhh--hccCC-CCCCCcCCCCCCCCccccccC
Q 046223 147 QQQSYGLKNPYSSGLMLMNNDNN-------NNNLATGCYDNQVVAESLMIM--NSYAP-VLPPPARGLVAGRPVWAQFIV 216 (408)
Q Consensus 147 ~gr~l~~~~~~s~~~s~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~g~~~~~~~~~ 216 (408)
..=.+.|-|+..-+....... ..+...+-++.+...-.+... ..+.. ..+|...+...|- +...+
T Consensus 197 --~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l---~~~~l 271 (360)
T KOG0145|consen 197 --CTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGL---AGVNL 271 (360)
T ss_pred --CCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCcccccccee---eeecc
Confidence 333455556542211000000 000000001100000000000 00000 0000000101110 00111
Q ss_pred CcCCCCCCCCCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeC
Q 046223 217 PTCNAVPDGNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIY 291 (408)
Q Consensus 217 p~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~ 291 (408)
| .......+|||-||..+++|.-|+++|..||.|..|+ .+.+.+|||||.+.+.++|..|+..|||..++
T Consensus 272 p-----~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg 346 (360)
T KOG0145|consen 272 P-----GGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLG 346 (360)
T ss_pred C-----CCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCcccc
Confidence 1 1223468999999999999999999999999998882 35788999999999999999999999999999
Q ss_pred CeEEEEEEecCC
Q 046223 292 GKHVVIEFSRPG 303 (408)
Q Consensus 292 g~~l~v~~a~~~ 303 (408)
+|.|.|.|...+
T Consensus 347 ~rvLQVsFKtnk 358 (360)
T KOG0145|consen 347 DRVLQVSFKTNK 358 (360)
T ss_pred ceEEEEEEecCC
Confidence 999999997543
No 21
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=2.5e-21 Score=184.77 Aligned_cols=219 Identities=16% Similarity=0.181 Sum_probs=143.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee----cCccEEEEEECCHHHHHHHHHHhcCccccccccccceeccc
Q 046223 82 TRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPY 157 (408)
Q Consensus 82 ~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~~ 157 (408)
.-.|.|+|||+.+.+.+|+.+|+.||.|.+|.|.+ +..|||||.|.+..+|.+|++.+||..|. || .+-++|
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~--gR--~VAVDW 192 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKID--GR--PVAVDW 192 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceec--Cc--eeEEee
Confidence 55799999999999999999999999999999986 33799999999999999999999999987 78 466667
Q ss_pred cCccccccCCCCCCCcccCC-CChhHHH------------H-----HHhhh--hccCCCCCCCcCCCCCCCCccc-----
Q 046223 158 SSGLMLMNNDNNNNNLATGC-YDNQVVA------------E-----SLMIM--NSYAPVLPPPARGLVAGRPVWA----- 212 (408)
Q Consensus 158 s~~~s~~~~~~~~~~~~~~~-~~~~~~~------------~-----~~~~~--~~~~~~~~~~~~~~~~g~~~~~----- 212 (408)
+..+-..+...........+ .+.+... + +.... ....-...-.......+..+..
T Consensus 193 AV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~ 272 (678)
T KOG0127|consen 193 AVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSG 272 (678)
T ss_pred ecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccc
Confidence 66443222110000000000 0000000 0 00000 0000000000000000000000
Q ss_pred -cccCCcC-C--CCCCCCCCceEEEcCCCCCCcHHHHHHHHhcCCCceee-----ccCCCCccEEEEEECCHHHHHHHHH
Q 046223 213 -QFIVPTC-N--AVPDGNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKEL-----RETPLKKHQRFIEFYDVRDAAKALK 283 (408)
Q Consensus 213 -~~~~p~~-~--~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v-----~~~~~~~g~afV~F~~~~~A~~A~~ 283 (408)
....... . ..++.....+|||.||++++|+++|.+.|++||+|..+ ..++.++|.|||.|.+..+|++||.
T Consensus 273 ~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~ 352 (678)
T KOG0127|consen 273 KKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIE 352 (678)
T ss_pred cCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHH
Confidence 0000000 0 01223345899999999999999999999999999888 4788999999999999999999999
Q ss_pred Hh-----CC-ceeCCeEEEEEEecCCC
Q 046223 284 EM-----NG-QEIYGKHVVIEFSRPGG 304 (408)
Q Consensus 284 ~l-----~g-~~~~g~~l~v~~a~~~~ 304 (408)
.. .| ..|.||.|+|..|-.+.
T Consensus 353 ~Aspa~e~g~~ll~GR~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 353 AASPASEDGSVLLDGRLLKVTLAVTRK 379 (678)
T ss_pred hcCccCCCceEEEeccEEeeeeccchH
Confidence 77 24 67899999999987653
No 22
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=2.5e-20 Score=169.89 Aligned_cols=166 Identities=19% Similarity=0.306 Sum_probs=133.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCccccccccccceeccc
Q 046223 83 RTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPY 157 (408)
Q Consensus 83 rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~~ 157 (408)
..||||.|.+++.|+.|+..|..||.|++|.+.. ++||||||+|+-.|.|+.|++.|||..+. ||.|++...-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlG--GRNiKVgrPs 191 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLG--GRNIKVGRPS 191 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhcccccc--CccccccCCC
Confidence 4699999999999999999999999999999876 67999999999999999999999998765 7744333210
Q ss_pred cCccccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCCCCCCCCceEEEcCCC
Q 046223 158 SSGLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDGNNQGTIVVFNLD 237 (408)
Q Consensus 158 s~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~l~V~nLp 237 (408)
.- ..+ ..+-+.+..+ ...-.+|||..+.
T Consensus 192 Nm------------pQA-QpiID~vqee---------------------------------------Ak~fnRiYVaSvH 219 (544)
T KOG0124|consen 192 NM------------PQA-QPIIDMVQEE---------------------------------------AKKFNRIYVASVH 219 (544)
T ss_pred CC------------ccc-chHHHHHHHH---------------------------------------HHhhheEEeeecC
Confidence 00 000 0000000011 1123789999999
Q ss_pred CCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q 046223 238 SGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRP 302 (408)
Q Consensus 238 ~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 302 (408)
.+++|+||+.+|+.||+|.+|. ..+..+||+||+|.+..+-..|+..||-+.++|+-|+|-.+-.
T Consensus 220 pDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 220 PDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 289 (544)
T ss_pred CCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccC
Confidence 9999999999999999999992 4556799999999999999999999999999999999987643
No 23
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=1.1e-19 Score=174.87 Aligned_cols=150 Identities=21% Similarity=0.326 Sum_probs=127.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeec--CccEEEEEECCHHHHHHHHHHhcCccccccccccceeccccCc
Q 046223 83 RTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERL--MEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPYSSG 160 (408)
Q Consensus 83 rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~--~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~~s~~ 160 (408)
..|||| +++||..|+++|+.+|.|.+|++.+. +-|||||.|.+.++|++|++.||...+. |+ .+++.|+..
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~--~~--~~rim~s~r 74 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLK--GK--PIRIMWSQR 74 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccC--Cc--EEEeehhcc
Confidence 368999 99999999999999999999888763 6899999999999999999999998876 66 344433320
Q ss_pred cccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCCCCCCCCceEEEcCCCCCC
Q 046223 161 LMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDGNNQGTIVVFNLDSGV 240 (408)
Q Consensus 161 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~l~V~nLp~~~ 240 (408)
. ...|||.||+.++
T Consensus 75 -------------------------------------------------------d-----------~~~~~i~nl~~~~ 88 (369)
T KOG0123|consen 75 -------------------------------------------------------D-----------PSLVFIKNLDESI 88 (369)
T ss_pred -------------------------------------------------------C-----------CceeeecCCCccc
Confidence 0 1229999999999
Q ss_pred cHHHHHHHHhcCCCceeec---cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCCCCC
Q 046223 241 SSSTLKEIFQAFGPVKELR---ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGGHS 306 (408)
Q Consensus 241 t~~~L~~~F~~~G~v~~v~---~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 306 (408)
+..+|.++|+.||.|.+|+ ....++|| ||+|+++++|.+|++.|||..+.|++|.|.....+..+
T Consensus 89 ~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er 156 (369)
T KOG0123|consen 89 DNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEER 156 (369)
T ss_pred CcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhh
Confidence 9999999999999999992 23338999 99999999999999999999999999999988765443
No 24
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.82 E-value=1.1e-18 Score=151.08 Aligned_cols=207 Identities=17% Similarity=0.246 Sum_probs=145.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHH----HhhccCCeEEEEEee--cCccEEEEEECCHHHHHHHHHHhcCccccccccccc
Q 046223 79 TGPTRTLVLSYVPGDVSETIVRR----DLEVFGEVRGVQMER--LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYG 152 (408)
Q Consensus 79 ~~~~rtlfV~nLp~~vte~~L~~----~F~~~G~V~~v~~~~--~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~ 152 (408)
..++.||||.||...+..++|+. +|++||+|.+|...+ +.+|.|||.|.+.+.|..|++.|+|..+. || .
T Consensus 6 ~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFy--gK--~ 81 (221)
T KOG4206|consen 6 VNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFY--GK--P 81 (221)
T ss_pred cCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCccc--Cc--h
Confidence 34566999999999999999887 999999999998876 77999999999999999999999998887 77 5
Q ss_pred eeccccCccccccCC-CCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCCCCCCCCceE
Q 046223 153 LKNPYSSGLMLMNND-NNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDGNNQGTI 231 (408)
Q Consensus 153 ~~~~~s~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~l 231 (408)
+++.|+...+.+-.. .........+...+... ..+ .+......... + .....|..........+..|
T Consensus 82 mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~---------~~~-~~~~~ng~~~~-~-~~~~~p~p~~~~~~ppn~il 149 (221)
T KOG4206|consen 82 MRIQYAKSDSDIIAQAPGTFVEKEKKINGEILA---------RIK-QPLDTNGHFYN-M-NRMNLPPPFLAQMAPPNNIL 149 (221)
T ss_pred hheecccCccchhhccCceeccccCcccccccc---------ccC-Ccccccccccc-c-ccccCCCCccccCCCCceEE
Confidence 788888866622111 00000000000000000 000 00000000000 0 00000000011224557899
Q ss_pred EEcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeC-CeEEEEEEec
Q 046223 232 VVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIY-GKHVVIEFSR 301 (408)
Q Consensus 232 ~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~-g~~l~v~~a~ 301 (408)
|+.|||..++.+.|..+|.+|...++|+......+.|||+|.+...|..|...|.|..+. ...++|.+++
T Consensus 150 f~~niP~es~~e~l~~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 150 FLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred EEecCCcchhHHHHHHHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 999999999999999999999999999877778999999999999999999999999887 7888888875
No 25
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.82 E-value=7.7e-20 Score=180.13 Aligned_cols=164 Identities=20% Similarity=0.347 Sum_probs=132.5
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeEEEEEee--------cCccEEEEEECCHHHHHHHHHHhcCccccccccccceecc
Q 046223 85 LVLSYVPGDVSETIVRRDLEVFGEVRGVQMER--------LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNP 156 (408)
Q Consensus 85 lfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~--------~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~ 156 (408)
|||.||++++|.++|..+|...|.|.++.|.. .+.|||||+|.+.++|+.|++.|+|..|. |..|.++.
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvld--GH~l~lk~- 594 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLD--GHKLELKI- 594 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceec--CceEEEEe-
Confidence 99999999999999999999999999987765 23599999999999999999999999877 66444443
Q ss_pred ccCccccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCCCCCCCCceEEEcCC
Q 046223 157 YSSGLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDGNNQGTIVVFNL 236 (408)
Q Consensus 157 ~s~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~l~V~nL 236 (408)
+..+. ....|. ..........|+|.||
T Consensus 595 -S~~k~----------------------------------------~~~~gK------------~~~~kk~~tKIlVRNi 621 (725)
T KOG0110|consen 595 -SENKP----------------------------------------ASTVGK------------KKSKKKKGTKILVRNI 621 (725)
T ss_pred -ccCcc----------------------------------------cccccc------------ccccccccceeeeecc
Confidence 22000 000000 0011112478999999
Q ss_pred CCCCcHHHHHHHHhcCCCceeecc-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCCC
Q 046223 237 DSGVSSSTLKEIFQAFGPVKELRE-----TPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGG 304 (408)
Q Consensus 237 p~~~t~~~L~~~F~~~G~v~~v~~-----~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 304 (408)
|+..+..+++++|..||.|.+|+. .+-.+|||||+|-+..+|.+|+++|.++.+.||+|.++||+...
T Consensus 622 pFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 622 PFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDN 694 (725)
T ss_pred chHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccch
Confidence 999999999999999999999942 23358999999999999999999999999999999999998654
No 26
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.80 E-value=2.1e-19 Score=157.68 Aligned_cols=82 Identities=24% Similarity=0.427 Sum_probs=75.6
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhcCCCceee-----ccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEE
Q 046223 225 GNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKEL-----RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEF 299 (408)
Q Consensus 225 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v-----~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 299 (408)
..+.++|||-.||.+..+.||..+|-.||.|.+. +.++.+|.|+||.|++..+|+.||.+|||..|+=++|+|.+
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQL 361 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQL 361 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhh
Confidence 3467999999999999999999999999999877 57889999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 046223 300 SRPGGHS 306 (408)
Q Consensus 300 a~~~~~~ 306 (408)
.+++...
T Consensus 362 KRPkdan 368 (371)
T KOG0146|consen 362 KRPKDAN 368 (371)
T ss_pred cCccccC
Confidence 8887644
No 27
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=2.8e-19 Score=157.32 Aligned_cols=136 Identities=24% Similarity=0.367 Sum_probs=110.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceecccc
Q 046223 79 TGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPYS 158 (408)
Q Consensus 79 ~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~~s 158 (408)
....|||||+||+.+|||+-|..||.+.|.|..++++.+ + +++.++
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~--------------------e--------------~~v~wa 48 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD--------------------E--------------LKVNWA 48 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh--------------------h--------------hccccc
Confidence 456799999999999999999999999999999998853 1 222221
Q ss_pred CccccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCCCCCCCCceEEEcCCCC
Q 046223 159 SGLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDGNNQGTIVVFNLDS 238 (408)
Q Consensus 159 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~l~V~nLp~ 238 (408)
. .|...+.+.......+||+.|..
T Consensus 49 ~--------------------------------------------------------~p~nQsk~t~~~hfhvfvgdls~ 72 (321)
T KOG0148|consen 49 T--------------------------------------------------------APGNQSKPTSNQHFHVFVGDLSP 72 (321)
T ss_pred c--------------------------------------------------------CcccCCCCccccceeEEehhcch
Confidence 1 00000111122246899999999
Q ss_pred CCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCCC
Q 046223 239 GVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGG 304 (408)
Q Consensus 239 ~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 304 (408)
.++.++|++.|.+||+|.+++ .++++|||+||.|-+.++|++||..|||.+|++|.|+..||..+.
T Consensus 73 eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 73 EIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred hcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCc
Confidence 999999999999999998772 578999999999999999999999999999999999999996543
No 28
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.80 E-value=3e-19 Score=166.42 Aligned_cols=80 Identities=25% Similarity=0.438 Sum_probs=72.6
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhcCCCceee-----ccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEE
Q 046223 225 GNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKEL-----RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEF 299 (408)
Q Consensus 225 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v-----~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 299 (408)
..+...|||.+||.+.-+.||-..|..||.|.+. +.++.++.|+||.|++..+|.+||..|||..++.++++|..
T Consensus 421 GpeGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQl 500 (510)
T KOG0144|consen 421 GPEGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQL 500 (510)
T ss_pred CCCccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEe
Confidence 3456789999999999999999999999999877 46788999999999999999999999999999999999998
Q ss_pred ecCCC
Q 046223 300 SRPGG 304 (408)
Q Consensus 300 a~~~~ 304 (408)
.+.+.
T Consensus 501 k~~~~ 505 (510)
T KOG0144|consen 501 KRDRN 505 (510)
T ss_pred eeccC
Confidence 76554
No 29
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.77 E-value=5e-19 Score=170.09 Aligned_cols=176 Identities=24% Similarity=0.357 Sum_probs=135.9
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCccccccccc
Q 046223 76 PPSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQS 150 (408)
Q Consensus 76 ~~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~ 150 (408)
...++..||||+-.|...+++.+|+++|+.+|.|..|+++. .++|.|||+|.|.+....|| .|.|+.+. |-
T Consensus 173 ~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrll--g~- 248 (549)
T KOG0147|consen 173 SPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLL--GV- 248 (549)
T ss_pred CchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCccc--Cc-
Confidence 35678899999999999999999999999999999999885 56999999999999999999 69998876 22
Q ss_pred cceeccccCccccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCCCCCCCCce
Q 046223 151 YGLKNPYSSGLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDGNNQGT 230 (408)
Q Consensus 151 l~~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~ 230 (408)
.+.+..+. +......... +. ..+. .+..| -..
T Consensus 249 -pv~vq~sE--------------------------aeknr~a~~s---~a----~~~k----~~~~p----------~~r 280 (549)
T KOG0147|consen 249 -PVIVQLSE--------------------------AEKNRAANAS---PA----LQGK----GFTGP----------MRR 280 (549)
T ss_pred -eeEecccH--------------------------HHHHHHHhcc---cc----cccc----ccccc----------hhh
Confidence 33332111 0000000000 00 0000 00111 133
Q ss_pred EEEcCCCCCCcHHHHHHHHhcCCCceee----c-cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCC
Q 046223 231 IVVFNLDSGVSSSTLKEIFQAFGPVKEL----R-ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPG 303 (408)
Q Consensus 231 l~V~nLp~~~t~~~L~~~F~~~G~v~~v----~-~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 303 (408)
||||||.+++++++|+.+|+.||.|+.| + .+|.++|||||+|.+.++|.+|++.|||.+|.|+.|+|.....+
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 9999999999999999999999999999 2 38999999999999999999999999999999999999876543
No 30
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.77 E-value=6.6e-17 Score=163.12 Aligned_cols=75 Identities=21% Similarity=0.262 Sum_probs=65.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCccccccccccceec
Q 046223 81 PTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKN 155 (408)
Q Consensus 81 ~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~ 155 (408)
..++|||+||+.++++++|+++|+.||+|.+|++.+ +++|||||+|.+.++|.+|++.|||..|. |+. |+|
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elg--Gr~--LrV 278 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLG--GQY--LRV 278 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeC--CeE--EEE
Confidence 457899999999999999999999999999999876 46999999999999999999999998765 774 444
Q ss_pred cccC
Q 046223 156 PYSS 159 (408)
Q Consensus 156 ~~s~ 159 (408)
.++.
T Consensus 279 ~kAi 282 (612)
T TIGR01645 279 GKCV 282 (612)
T ss_pred EecC
Confidence 4433
No 31
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=5.5e-18 Score=163.23 Aligned_cols=161 Identities=16% Similarity=0.237 Sum_probs=130.8
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeEEEEEee---cCccEEEEEECCHHHHHHHHHHhcCccccccccccceeccccCcc
Q 046223 85 LVLSYVPGDVSETIVRRDLEVFGEVRGVQMER---LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPYSSGL 161 (408)
Q Consensus 85 lfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~---~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~~s~~~ 161 (408)
|||.||+.++|..+|+++|+.||+|.+|++.. -++|| ||+|+++++|++|++.+||..+. ++.+-+........
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~--~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLN--GKKIYVGLFERKEE 155 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccC--CCeeEEeeccchhh
Confidence 99999999999999999999999999999987 35999 99999999999999999998776 44333322111100
Q ss_pred ccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCCCCCCCCceEEEcCCCCCCc
Q 046223 162 MLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDGNNQGTIVVFNLDSGVS 241 (408)
Q Consensus 162 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~l~V~nLp~~~t 241 (408)
...+.. . ....-..++|.|+..+++
T Consensus 156 --------------------------------------------r~~~~~----------~-~~~~~t~v~vk~~~~~~~ 180 (369)
T KOG0123|consen 156 --------------------------------------------REAPLG----------E-YKKRFTNVYVKNLEEDST 180 (369)
T ss_pred --------------------------------------------hccccc----------c-hhhhhhhhheeccccccc
Confidence 000000 0 111236789999999999
Q ss_pred HHHHHHHHhcCCCceee----ccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCC
Q 046223 242 SSTLKEIFQAFGPVKEL----RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPG 303 (408)
Q Consensus 242 ~~~L~~~F~~~G~v~~v----~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 303 (408)
+++|.++|..||.|..+ ...+.+++|+||.|++.++|..|++.|||..+.+..+.|..+..+
T Consensus 181 ~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk 246 (369)
T KOG0123|consen 181 DEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKK 246 (369)
T ss_pred hHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCccceeecccccc
Confidence 99999999999999988 356668999999999999999999999999999999999988764
No 32
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.75 E-value=6.5e-18 Score=157.22 Aligned_cols=165 Identities=20% Similarity=0.238 Sum_probs=128.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCccccccccccceec
Q 046223 81 PTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKN 155 (408)
Q Consensus 81 ~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~ 155 (408)
...+|||++|+++++|+.|++.|.+||+|.++.+++ +++||+||+|.+.+...+++..- ...+++|.+....
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~---~h~~dgr~ve~k~ 81 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNAR---THKLDGRSVEPKR 81 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeeccc---ccccCCcccccee
Confidence 678999999999999999999999999999998887 56999999999999988887532 1222355333332
Q ss_pred cccCccccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCCCCCCCCceEEEcC
Q 046223 156 PYSSGLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDGNNQGTIVVFN 235 (408)
Q Consensus 156 ~~s~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~l~V~n 235 (408)
..+. .+ . .........++|||++
T Consensus 82 av~r------------------~~-----------------------~----------------~~~~~~~~tkkiFvGG 104 (311)
T KOG4205|consen 82 AVSR------------------ED-----------------------Q----------------TKVGRHLRTKKIFVGG 104 (311)
T ss_pred ccCc------------------cc-----------------------c----------------cccccccceeEEEecC
Confidence 1111 00 0 0000011357999999
Q ss_pred CCCCCcHHHHHHHHhcCCCceee-----ccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCCCCC
Q 046223 236 LDSGVSSSTLKEIFQAFGPVKEL-----RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGGHS 306 (408)
Q Consensus 236 Lp~~~t~~~L~~~F~~~G~v~~v-----~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 306 (408)
|+.+++++++++.|.+||.|..+ ..+...+||+||.|.+++++.+++. .+-..|+|+.+.|..|.++...
T Consensus 105 ~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 105 LPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIPKEVM 179 (311)
T ss_pred cCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeeccchhhc
Confidence 99999999999999999988777 4567789999999999999998876 7788999999999999887543
No 33
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.74 E-value=1.2e-17 Score=160.62 Aligned_cols=221 Identities=14% Similarity=0.113 Sum_probs=135.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCccccccccccceecc
Q 046223 82 TRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNP 156 (408)
Q Consensus 82 ~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~ 156 (408)
-+.||||||..+++|++|+.+|+.||.|..|.+.+ .++|||||+|.+.++|++|++.||| |.+.||.+++.+.
T Consensus 278 ~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lng--felAGr~ikV~~v 355 (549)
T KOG0147|consen 278 MRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNG--FELAGRLIKVSVV 355 (549)
T ss_pred hhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhcc--ceecCceEEEEEe
Confidence 33499999999999999999999999999998876 4699999999999999999999999 5566885554432
Q ss_pred ccCccc-cccCCCCCCC------cccCCCC-hhHHHHHHhhhhccCCCCC---------CCcCCCCCCCCccccccCCcC
Q 046223 157 YSSGLM-LMNNDNNNNN------LATGCYD-NQVVAESLMIMNSYAPVLP---------PPARGLVAGRPVWAQFIVPTC 219 (408)
Q Consensus 157 ~s~~~s-~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~---------~~~~~~~~g~~~~~~~~~p~~ 219 (408)
-..... ....+....+ +..+..+ .+...+........ .+.. ........+.........|..
T Consensus 356 ~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~-~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~ 434 (549)
T KOG0147|consen 356 TERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRS-LPSTAISALLLLAKLASAAQFNGVVRVRSVDPAD 434 (549)
T ss_pred eeecccccccccccccchhhccccccccccHHHHHHHHhccCCcc-ccchhhhHHHhccccchHHhhcCCcCccccCccc
Confidence 111000 0000000000 0000000 00001100000000 0000 000000000000011111111
Q ss_pred CCCCCCCCCceEEEcCCCC--CCc--------HHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCce
Q 046223 220 NAVPDGNNQGTIVVFNLDS--GVS--------SSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQE 289 (408)
Q Consensus 220 ~~~~~~~~~~~l~V~nLp~--~~t--------~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~ 289 (408)
....-.....++.+.|+=. ..| .+|+.+.+++||.|..|.....+-|+.||.|.+.+.|..|+++|||++
T Consensus 435 ~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a~~alhgrW 514 (549)
T KOG0147|consen 435 ASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTAVKALHGRW 514 (549)
T ss_pred cccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCCceEEEecCcHHHHHHHHHHHhhhh
Confidence 1111114456777887732 112 368889999999999997666677999999999999999999999999
Q ss_pred eCCeEEEEEEecCCCC
Q 046223 290 IYGKHVVIEFSRPGGH 305 (408)
Q Consensus 290 ~~g~~l~v~~a~~~~~ 305 (408)
|.|+.|.+.|-.....
T Consensus 515 F~gr~Ita~~~~~~~Y 530 (549)
T KOG0147|consen 515 FAGRMITAKYLPLERY 530 (549)
T ss_pred hccceeEEEEeehhhh
Confidence 9999999999765443
No 34
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.74 E-value=5.8e-17 Score=135.06 Aligned_cols=179 Identities=20% Similarity=0.236 Sum_probs=127.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee--cCccEEEEEECCHHHHHHHHHHhcCccccccccccceecc
Q 046223 79 TGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER--LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNP 156 (408)
Q Consensus 79 ~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~--~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~ 156 (408)
...+++|||+|||.++.|.||+++|-+||.|..|.+.. ..-.||||+|++..+|+.||..-+|..+. +. .|+|.
T Consensus 3 gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdyd--g~--rLRVE 78 (241)
T KOG0105|consen 3 GRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYD--GC--RLRVE 78 (241)
T ss_pred CcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccC--cc--eEEEE
Confidence 34678999999999999999999999999999998864 23689999999999999999999997776 33 58887
Q ss_pred ccCccccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCCCCCCCCceEEEcCC
Q 046223 157 YSSGLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDGNNQGTIVVFNL 236 (408)
Q Consensus 157 ~s~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~l~V~nL 236 (408)
|...-. ......+.+. ..|+..+..- ...-.+.......|.|.+|
T Consensus 79 fprggr-------~s~~~~G~y~-------------------------gggrgGgg~g---g~rgppsrrSe~RVvVsGL 123 (241)
T KOG0105|consen 79 FPRGGR-------SSSDRRGSYS-------------------------GGGRGGGGGG---GRRGPPSRRSEYRVVVSGL 123 (241)
T ss_pred eccCCC-------cccccccccC-------------------------CCCCCCCCCC---cccCCcccccceeEEEecC
Confidence 754110 0000001000 0001000000 0000112234578999999
Q ss_pred CCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeC--CeEEEEE
Q 046223 237 DSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIY--GKHVVIE 298 (408)
Q Consensus 237 p~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~--g~~l~v~ 298 (408)
|.+.+++||++...+-|.|..... ...|++.|+|-..|+-+-|++.|+...+. |...-+.
T Consensus 124 p~SgSWQDLKDHmReaGdvCfadv--~rDg~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yir 185 (241)
T KOG0105|consen 124 PPSGSWQDLKDHMREAGDVCFADV--QRDGVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIR 185 (241)
T ss_pred CCCCchHHHHHHHHhhCCeeeeee--ecccceeeeeeehhhHHHHHHhhccccccCcCcEeeEE
Confidence 999999999999999999876642 34569999999999999999999877654 4443333
No 35
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.71 E-value=5.8e-16 Score=132.88 Aligned_cols=217 Identities=15% Similarity=0.175 Sum_probs=123.8
Q ss_pred CCCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecC------ccEEEEEECCHHHHHHHHHHhcCcccccc
Q 046223 74 LPPPSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLM------EGIVTVHFYDLRHAEMAFKEIREQHMQLQ 147 (408)
Q Consensus 74 ~p~~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~------kG~afV~F~~~~~A~~Ai~~lng~~i~~~ 147 (408)
........-|||||.+||.|+...||+.+|..|-..+...+...+ +-+|||.|.+..+|..|+.+|||..|+.+
T Consensus 26 ~~~~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE 105 (284)
T KOG1457|consen 26 LLADEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPE 105 (284)
T ss_pred cccccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccc
Confidence 333444567999999999999999999999999877775544322 46999999999999999999999998865
Q ss_pred ccccceeccccC--ccccccCC--CCCC--CcccCCCChhHH-----HHHHhhhhccCCCCCCCcCCCCCCCC-cccccc
Q 046223 148 QQSYGLKNPYSS--GLMLMNND--NNNN--NLATGCYDNQVV-----AESLMIMNSYAPVLPPPARGLVAGRP-VWAQFI 215 (408)
Q Consensus 148 gr~l~~~~~~s~--~~s~~~~~--~~~~--~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~ 215 (408)
.- ..+++.+++ .++.-+.. .+.. -+..-....... +.......-+....+-.+..+..... ......
T Consensus 106 ~~-stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~ 184 (284)
T KOG1457|consen 106 TG-STLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALS 184 (284)
T ss_pred cC-ceeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhh
Confidence 32 234444433 22111000 0000 000000000000 00000000000000000000000000 000000
Q ss_pred -----CCcCC-----C---CCCCCCCceEEEcCCCCCCcHHHHHHHHhcCCCceeecc-CCCCccEEEEEECCHHHHHHH
Q 046223 216 -----VPTCN-----A---VPDGNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRE-TPLKKHQRFIEFYDVRDAAKA 281 (408)
Q Consensus 216 -----~p~~~-----~---~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~-~~~~~g~afV~F~~~~~A~~A 281 (408)
.|..+ . ........+|||.||..+++|++|+.+|+.|-....++. .......||++|++.+.|..|
T Consensus 185 a~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~a 264 (284)
T KOG1457|consen 185 APDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDA 264 (284)
T ss_pred hhhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHH
Confidence 00000 0 011223468999999999999999999999975544432 223456899999999999999
Q ss_pred HHHhCCceeC
Q 046223 282 LKEMNGQEIY 291 (408)
Q Consensus 282 ~~~l~g~~~~ 291 (408)
+..|+|..|.
T Consensus 265 m~~lqg~~~s 274 (284)
T KOG1457|consen 265 MNHLQGNLLS 274 (284)
T ss_pred HHHhhcceec
Confidence 9999987653
No 36
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.70 E-value=9.8e-16 Score=142.18 Aligned_cols=218 Identities=19% Similarity=0.182 Sum_probs=146.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccE-EEEEECCHHHHHHHHHHhcCccccccccccceeccccCcc
Q 046223 83 RTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGI-VTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPYSSGL 161 (408)
Q Consensus 83 rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~-afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~~s~~~ 161 (408)
-.++|+|+-+-|+-|-|..+|++||.|..|....++.|| |+|+|.|.+.|..|..+|+|+.|..... .+|+.|++-.
T Consensus 151 Lr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcC--tLrId~Sklt 228 (492)
T KOG1190|consen 151 LRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCC--TLRIDFSKLT 228 (492)
T ss_pred EEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCcee--EEEeehhhcc
Confidence 457899999999999999999999999998887788777 9999999999999999999999987666 5777787644
Q ss_pred cc--ccCC-----CCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCCCCCCCCceEEEc
Q 046223 162 ML--MNND-----NNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDGNNQGTIVVF 234 (408)
Q Consensus 162 s~--~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~l~V~ 234 (408)
.+ -... ..+-++..+.... ..+.+.....+..++.+.......+ .................+..|.|.
T Consensus 229 ~LnvKynndkSRDyTnp~LP~gd~~p--~l~~~~~aa~~~~~~~~g~p~aip~---~~~~a~~a~~~~~~~~~n~vllvs 303 (492)
T KOG1190|consen 229 DLNVKYNNDKSRDYTNPDLPVGDGQP--SLDQLMAAAFGSVPAVHGAPLAIPS---GAAGANAADGKIESPSANVVLLVS 303 (492)
T ss_pred cceeeccccccccccCCCCCCCcccc--ccchhhhccccccccccCCcccCCc---cchhhcccccccccCCCceEEEEe
Confidence 31 1111 1111112221100 0000000000111111000000000 000000000000001125788999
Q ss_pred CCCC-CCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCCCCCC
Q 046223 235 NLDS-GVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGGHSK 307 (408)
Q Consensus 235 nLp~-~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 307 (408)
||.. .+|.+.|..+|+-||+|.+|+.....+.-|+|+|.+...|+-|++.|+|..|.|++|+|.+++......
T Consensus 304 nln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vql 377 (492)
T KOG1190|consen 304 NLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQL 377 (492)
T ss_pred cCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccC
Confidence 9976 589999999999999999997666667899999999999999999999999999999999998765443
No 37
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=1.1e-16 Score=140.08 Aligned_cols=166 Identities=22% Similarity=0.333 Sum_probs=127.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceeccccCccc
Q 046223 83 RTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPYSSGLM 162 (408)
Q Consensus 83 rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~~s~~~s 162 (408)
..||||+|++.+.+.+|..+|..||.|..|.+. .||+||+|.|..+|..|+..|||..|.+.. +.+.|...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk---~gf~fv~fed~rda~Dav~~l~~~~l~~e~----~vve~~r~-- 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK---NGFGFVEFEDPRDADDAVHDLDGKELCGER----LVVEHARG-- 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee---cccceeccCchhhhhcccchhcCceeccee----eeeecccc--
Confidence 358999999999999999999999999999885 799999999999999999999999887321 44443320
Q ss_pred cccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCC-CCCccccccCCcCCCCCCCCCCceEEEcCCCCCCc
Q 046223 163 LMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVA-GRPVWAQFIVPTCNAVPDGNNQGTIVVFNLDSGVS 241 (408)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~p~~~~~~~~~~~~~l~V~nLp~~~t 241 (408)
..... ..... ++..|...- .......+.|+|.|+...+.
T Consensus 73 --------------~~~~~--------------------g~~~~g~r~~~~~~~------~~p~~s~~r~~~~~~~~r~~ 112 (216)
T KOG0106|consen 73 --------------KRRGR--------------------GRPRGGDRRSDSRRY------RPPSRTHFRLIVRNLSLRVS 112 (216)
T ss_pred --------------ccccc--------------------CCCCCCCccchhhcc------CCcccccceeeeccchhhhh
Confidence 00000 00000 111111111 11234468899999999999
Q ss_pred HHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 046223 242 SSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFS 300 (408)
Q Consensus 242 ~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a 300 (408)
+.+|.+.|+.+|.+..... ..+++||+|+..++|.+|+..|+|..+.|+.|.+...
T Consensus 113 ~qdl~d~~~~~g~~~~~~~---~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 113 WQDLKDHFRPAGEVTYVDA---RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred HHHHhhhhcccCCCchhhh---hccccceeehhhhhhhhcchhccchhhcCceeeeccc
Confidence 9999999999999955432 6899999999999999999999999999999999443
No 38
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=7.4e-16 Score=148.77 Aligned_cols=249 Identities=28% Similarity=0.369 Sum_probs=169.9
Q ss_pred CCCCccccCCCCCCCCCCCCCCCCCCCC----CCCcCCCCCCCCCCCCCCCCCCCCCCccCCcCCccCCCCCCCCCCCCC
Q 046223 1 MGETGISRFQGNLDPRAQEFRPTTLFRP----PQVYYPYGAASPPTLPPYPSNDVQVVPFGGVGYAQYPTHPQLGVPLPP 76 (408)
Q Consensus 1 ~~~~~~~~~~~~~~~~a~~~~p~~p~~~----~~~~~p~~~~ppppppp~~~~~~~~~p~~~~~~~~~~~~p~~~~~~p~ 76 (408)
|++.++=...|++++.|++|-+..-..+ .+...++.+++++++ +.+-+. .-|.++ .+++...+|.
T Consensus 1 ~~d~~lf~~~G~~el~~~~~~~~~~~~~~~n~~~~~~~~~P~~~s~~-~~~~l~--------a~f~~~--~~p~~~~np~ 69 (549)
T KOG4660|consen 1 LEDCDLFSSGGGMELDADSFDNLSVRNSDRNSAGFVFPEHPPGESRT-FVSELS--------ALFEPF--NKPLRPDNPS 69 (549)
T ss_pred CCccccccCCCCCCcccccccchhhcccccCCCccccCCCCCCCCCC-ChhhHH--------hhhhcc--CCCCCcCCCC
Confidence 5566777788999999999988443221 111112111111111 111110 111111 2222235666
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceecc
Q 046223 77 PSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNP 156 (408)
Q Consensus 77 ~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~ 156 (408)
.....+++|+|-|||.+|++++|..+|+.||+|+.|+.....+|.+||+|.|+.+|+.|+++|++.+|.++.. +..
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~----k~~ 145 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRI----KRP 145 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhh----cCC
Confidence 7778899999999999999999999999999999999888889999999999999999999999999873322 121
Q ss_pred ccCccccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCCCCCCCCceEEEcCC
Q 046223 157 YSSGLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDGNNQGTIVVFNL 236 (408)
Q Consensus 157 ~s~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~l~V~nL 236 (408)
.. ....+....+...|.++..+..+..+.......+|+- |
T Consensus 146 ~~---------------------------------------~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l 185 (549)
T KOG4660|consen 146 GG---------------------------------------ARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-L 185 (549)
T ss_pred Cc---------------------------------------ccccchhcccchhhhhccchhhcCCCCCCcCCcceee-e
Confidence 11 1112233344555666555554444444444555544 8
Q ss_pred CCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCCCCC
Q 046223 237 DSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGGHS 306 (408)
Q Consensus 237 p~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 306 (408)
....+..-++..|..+|.+.. +.++.-...-|++|.+..++..+...+ |..+.+....+.++.+.+..
T Consensus 186 ~P~~s~~~~~~~~~~~~~~~~-~~~~~~~hq~~~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~S~~~g~~ 253 (549)
T KOG4660|consen 186 SPTRSSILLEHISSVDGSSPG-RETPLLNHQRFVEFADNRSYAFSEPRG-GFLISNSSGVITFSGPGGVW 253 (549)
T ss_pred ccchhhhhhhcchhccCcccc-ccccchhhhhhhhhccccchhhcccCC-ceecCCCCceEEecCCCccc
Confidence 888888888888899999887 777777778899999999997776644 77788888888888886554
No 39
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.67 E-value=7.8e-16 Score=129.43 Aligned_cols=79 Identities=25% Similarity=0.452 Sum_probs=72.4
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 046223 227 NQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSR 301 (408)
Q Consensus 227 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 301 (408)
..++|||+||++++++++|+++|++||.|.++. .++.++|||||+|++.++|++|++.||+..|+|+.|+|++++
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 358999999999999999999999999999883 467789999999999999999999999999999999999997
Q ss_pred CCCC
Q 046223 302 PGGH 305 (408)
Q Consensus 302 ~~~~ 305 (408)
.+..
T Consensus 113 ~~~~ 116 (144)
T PLN03134 113 DRPS 116 (144)
T ss_pred cCCC
Confidence 6543
No 40
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.64 E-value=2.1e-15 Score=149.16 Aligned_cols=202 Identities=17% Similarity=0.223 Sum_probs=130.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceeccc
Q 046223 78 STGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPY 157 (408)
Q Consensus 78 ~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~~ 157 (408)
..+..+.|+|+|||..+..++|.++|..||+|..|.+. ...-.|+|+|.+..+|++|++.|....+. .-.+.+.+
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp-~~G~~aiv~fl~p~eAr~Afrklaysr~k----~~plyle~ 455 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP-PGGTGAIVEFLNPLEARKAFRKLAYSRFK----SAPLYLEW 455 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecC-cccceeeeeecCccchHHHHHHhchhhhc----cCcccccc
Confidence 34556789999999999999999999999999999665 33344999999999999999999887654 11233322
Q ss_pred cCccccccCCCCCCCcccCCCChhHHHHHHhhhhccCCC--CCCCcC-CCCCCCCccccccCCcC--C-CCCCCCCCceE
Q 046223 158 SSGLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPV--LPPPAR-GLVAGRPVWAQFIVPTC--N-AVPDGNNQGTI 231 (408)
Q Consensus 158 s~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~g~~~~~~~~~p~~--~-~~~~~~~~~~l 231 (408)
+....... + ++....... .... .-+..+ ....+............ . .........+|
T Consensus 456 aP~dvf~~-~-pka~~~~~e---------------~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~l 518 (725)
T KOG0110|consen 456 APEDVFTE-D-PKADDLSAE---------------SRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKL 518 (725)
T ss_pred ChhhhccC-C-ccccccccc---------------cccccccCcceecccccccccccCCccccccchhhhhccccchhh
Confidence 22110000 0 000000000 0000 000000 00011100000000000 0 00111222339
Q ss_pred EEcCCCCCCcHHHHHHHHhcCCCceeec----cC----CCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 046223 232 VVFNLDSGVSSSTLKEIFQAFGPVKELR----ET----PLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSR 301 (408)
Q Consensus 232 ~V~nLp~~~t~~~L~~~F~~~G~v~~v~----~~----~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 301 (408)
||.||++++|.++|...|...|.|..+. .. -.+.|||||+|.+.++|++|++.|+|+.|+|+.|.|+++.
T Consensus 519 fvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 519 FVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 9999999999999999999999999882 11 1245999999999999999999999999999999999997
No 41
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.63 E-value=9.8e-15 Score=135.60 Aligned_cols=188 Identities=18% Similarity=0.260 Sum_probs=140.2
Q ss_pred CCEEEEcCCC-CCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceeccccCc
Q 046223 82 TRTLVLSYVP-GDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPYSSG 160 (408)
Q Consensus 82 ~rtlfV~nLp-~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~~s~~ 160 (408)
+..|.|.||. ..||.+.|..+|.-||+|..|+|..+.+--|+|+|.|...|+.|++.|+|..|+ || +|++.|++.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~--gk--~lrvt~SKH 372 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLY--GK--KLRVTLSKH 372 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceec--Cc--eEEEeeccC
Confidence 5788999995 568999999999999999999999888899999999999999999999999988 56 588888875
Q ss_pred cccc--cCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCC-CCCCCCceEEEcCCC
Q 046223 161 LMLM--NNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAV-PDGNNQGTIVVFNLD 237 (408)
Q Consensus 161 ~s~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~-~~~~~~~~l~V~nLp 237 (408)
..+. .......++... |. ..+. .++..|..... .-..+..+|.+.|+|
T Consensus 373 ~~vqlp~egq~d~glT~d----------------y~--~spL-----------hrfkkpgsKN~~ni~PpsatlHlsnip 423 (492)
T KOG1190|consen 373 TNVQLPREGQEDQGLTKD----------------YG--NSPL-----------HRFKKPGSKNYQNIFPPSATLHLSNIP 423 (492)
T ss_pred ccccCCCCCCcccccccc----------------CC--CCch-----------hhccCcccccccccCCchhheeeccCC
Confidence 5322 111111100000 00 0000 01111111110 112335799999999
Q ss_pred CCCcHHHHHHHHhcCCCceee-ccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCe-EEEEEEecC
Q 046223 238 SGVSSSTLKEIFQAFGPVKEL-RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGK-HVVIEFSRP 302 (408)
Q Consensus 238 ~~~t~~~L~~~F~~~G~v~~v-~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~-~l~v~~a~~ 302 (408)
.+++||||++.|..-|...+. ...++.+.+|++.++++|+|..|+..+|...+++. -|+|.|++.
T Consensus 424 ~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 424 PSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred cccchhHHHHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 999999999999998876544 66777889999999999999999999999998865 899999875
No 42
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.60 E-value=7.4e-14 Score=127.47 Aligned_cols=196 Identities=14% Similarity=0.206 Sum_probs=131.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEE--------EEEee----cCccEEEEEECCHHHHHHHHHHhcCccccc
Q 046223 79 TGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRG--------VQMER----LMEGIVTVHFYDLRHAEMAFKEIREQHMQL 146 (408)
Q Consensus 79 ~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~--------v~~~~----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~ 146 (408)
...+..|||+|||.++|.+++.++|++||-|.. |++.+ .-+|-|+|.|...+++..|++.|++..|.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r- 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELR- 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccccc-
Confidence 345677999999999999999999999998766 66666 33899999999999999999999999886
Q ss_pred cccccceeccccCccccccCCCCCCCcc-cCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCCCCC
Q 046223 147 QQQSYGLKNPYSSGLMLMNNDNNNNNLA-TGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDG 225 (408)
Q Consensus 147 ~gr~l~~~~~~s~~~s~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~ 225 (408)
|+ .++|.-+.-. .....+.... .++.... .+..+..+... + | .|........
T Consensus 210 -g~--~~rVerAkfq---~Kge~~~~~k~k~k~~~~--kk~~k~q~k~~------------d---w----~pd~~~~sk~ 262 (382)
T KOG1548|consen 210 -GK--KLRVERAKFQ---MKGEYDASKKEKGKCKDK--KKLKKQQQKLL------------D---W----RPDRDDPSKA 262 (382)
T ss_pred -Cc--EEEEehhhhh---hccCcCcccccccccccH--HHHHHHHHhhc------------c---c----CCCccccccc
Confidence 55 4555322210 0000000000 0000000 00000000000 0 0 1111111123
Q ss_pred CCCceEEEcCCCC----CCc-------HHHHHHHHhcCCCceeec-cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCe
Q 046223 226 NNQGTIVVFNLDS----GVS-------SSTLKEIFQAFGPVKELR-ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGK 293 (408)
Q Consensus 226 ~~~~~l~V~nLp~----~~t-------~~~L~~~F~~~G~v~~v~-~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 293 (408)
...++|.|.|+=. ..+ ++||.+-+.+||.|..|. ......|.+-|.|.+.++|..||+.|+|+.|+||
T Consensus 263 r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgR 342 (382)
T KOG1548|consen 263 RADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGR 342 (382)
T ss_pred cCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecce
Confidence 3468899999842 222 467888899999999983 4557899999999999999999999999999999
Q ss_pred EEEEEEecC
Q 046223 294 HVVIEFSRP 302 (408)
Q Consensus 294 ~l~v~~a~~ 302 (408)
+|.......
T Consensus 343 ql~A~i~DG 351 (382)
T KOG1548|consen 343 QLTASIWDG 351 (382)
T ss_pred EEEEEEeCC
Confidence 999887644
No 43
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=3.9e-15 Score=123.44 Aligned_cols=77 Identities=27% Similarity=0.463 Sum_probs=73.0
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCCC
Q 046223 228 QGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGG 304 (408)
Q Consensus 228 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 304 (408)
.++|||+||+..+++.||+.+|..||.|..|+......|||||+|++..+|+.|+..|+|+.|+|..|+|+++.-..
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 58999999999999999999999999999998777889999999999999999999999999999999999997554
No 44
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.57 E-value=9.5e-15 Score=122.83 Aligned_cols=76 Identities=16% Similarity=0.202 Sum_probs=66.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCccccccccccce
Q 046223 79 TGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGL 153 (408)
Q Consensus 79 ~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~ 153 (408)
...+++|||+||++++||++|+++|++||.|.+|.+.. +++|||||+|.+.++|++|++.||+..|. ++. +
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~--Gr~--l 106 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELN--GRH--I 106 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC--CEE--E
Confidence 44577899999999999999999999999999998875 46999999999999999999999998876 664 4
Q ss_pred ecccc
Q 046223 154 KNPYS 158 (408)
Q Consensus 154 ~~~~s 158 (408)
++.++
T Consensus 107 ~V~~a 111 (144)
T PLN03134 107 RVNPA 111 (144)
T ss_pred EEEeC
Confidence 44443
No 45
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.54 E-value=1.7e-13 Score=128.30 Aligned_cols=214 Identities=16% Similarity=0.171 Sum_probs=133.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhc-cCCeEEEEEee----cCccEEEEEECCHHHHHHHHHHhcCccccccccccceec
Q 046223 81 PTRTLVLSYVPGDVSETIVRRDLEV-FGEVRGVQMER----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKN 155 (408)
Q Consensus 81 ~~rtlfV~nLp~~vte~~L~~~F~~-~G~V~~v~~~~----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~ 155 (408)
-.|.+||.|||+++.+++|+++|.. .|+|+.|.+.. +.+|+|.|+|+++|.+++|++.||...+. ||.|.++.
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~--GR~l~vKE 120 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVN--GRELVVKE 120 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhcccc--CceEEEec
Confidence 4567999999999999999999975 89999998875 77999999999999999999999987765 88766665
Q ss_pred cccCccc----cccCCCCCCCcccCCCChhHHHHHHhhhhccCC---CCC-CCcCCCCCC---CCc--------------
Q 046223 156 PYSSGLM----LMNNDNNNNNLATGCYDNQVVAESLMIMNSYAP---VLP-PPARGLVAG---RPV-------------- 210 (408)
Q Consensus 156 ~~s~~~s----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~g---~~~-------------- 210 (408)
+-...+- +.+ +.. ..+.+..+.+.-...+...-.-.. ... ........+ ...
T Consensus 121 d~d~q~~~~~~~~r-~g~--~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lf 197 (608)
T KOG4212|consen 121 DHDEQRDQYGRIVR-DGG--GGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLF 197 (608)
T ss_pred cCchhhhhhhheee-ccC--cccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcc
Confidence 3221000 000 000 000000000000000000000000 000 000000000 000
Q ss_pred --cccccCCcCCCCCCCCCCceEEEcCCCCCCcHHHHHHHHhcCCCceee----ccCCCCccEEEEEECCHHHHHHHHHH
Q 046223 211 --WAQFIVPTCNAVPDGNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKEL----RETPLKKHQRFIEFYDVRDAAKALKE 284 (408)
Q Consensus 211 --~~~~~~p~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v----~~~~~~~g~afV~F~~~~~A~~A~~~ 284 (408)
...|..+.. .-.......+||.||.+.+....|++.|.-.|.|+.| ...+.++|++.++|.+.-+|..||..
T Consensus 198 gl~~~Flr~~h--~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsm 275 (608)
T KOG4212|consen 198 GLSASFLRSLH--IFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISM 275 (608)
T ss_pred cchhhhhhhcc--CCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHh
Confidence 000000000 0011124689999999999999999999999999888 45678899999999999999999999
Q ss_pred hCCceeCCeEEEEEEec
Q 046223 285 MNGQEIYGKHVVIEFSR 301 (408)
Q Consensus 285 l~g~~~~g~~l~v~~a~ 301 (408)
|++.-+..++..+.+.+
T Consensus 276 l~~~g~~~~~~~~Rl~~ 292 (608)
T KOG4212|consen 276 LDRQGLFDRRMTVRLDR 292 (608)
T ss_pred hccCCCccccceeeccc
Confidence 99877777777777643
No 46
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.52 E-value=5.6e-14 Score=103.16 Aligned_cols=66 Identities=33% Similarity=0.600 Sum_probs=61.4
Q ss_pred EEEcCCCCCCcHHHHHHHHhcCCCceeec----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 046223 231 IVVFNLDSGVSSSTLKEIFQAFGPVKELR----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVV 296 (408)
Q Consensus 231 l~V~nLp~~~t~~~L~~~F~~~G~v~~v~----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~ 296 (408)
|||+|||.++|+++|+++|+.||.|..+. ..+..+++|||+|.+.++|++|++.|+|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999999998882 3567889999999999999999999999999999986
No 47
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.52 E-value=3.9e-14 Score=103.97 Aligned_cols=61 Identities=26% Similarity=0.441 Sum_probs=57.3
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeEEEEEeec----CccEEEEEECCHHHHHHHHHHhcCcccc
Q 046223 85 LVLSYVPGDVSETIVRRDLEVFGEVRGVQMERL----MEGIVTVHFYDLRHAEMAFKEIREQHMQ 145 (408)
Q Consensus 85 lfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~----~kG~afV~F~~~~~A~~Ai~~lng~~i~ 145 (408)
|||+|||.++|+++|+++|++||.|..+.+... .+|+|||+|.+.++|++|++.|+|..+.
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~ 65 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKIN 65 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEEC
Confidence 799999999999999999999999999988863 5999999999999999999999998775
No 48
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=2.1e-14 Score=119.11 Aligned_cols=75 Identities=19% Similarity=0.276 Sum_probs=68.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceeccccC
Q 046223 81 PTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPYSS 159 (408)
Q Consensus 81 ~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~~s~ 159 (408)
-.+.||||||+.++++.||+.+|..||.|.+|.|.+...|||||+|+|..||+.|+..|+|+.|. |. .++|+++.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~c--G~--r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDIC--GS--RIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCcccc--Cc--eEEEEeec
Confidence 46789999999999999999999999999999999988999999999999999999999999987 32 47776654
No 49
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=1.2e-13 Score=125.15 Aligned_cols=80 Identities=19% Similarity=0.312 Sum_probs=72.5
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec---cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 046223 225 GNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR---ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSR 301 (408)
Q Consensus 225 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~---~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 301 (408)
....++|+|+|||+...|-||+.+|.+||.|.+|. ....+||||||+|++.+||++|.++|||..+.||+|+|..|.
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 34458999999999999999999999999999882 345689999999999999999999999999999999999998
Q ss_pred CCC
Q 046223 302 PGG 304 (408)
Q Consensus 302 ~~~ 304 (408)
.+-
T Consensus 173 arV 175 (376)
T KOG0125|consen 173 ARV 175 (376)
T ss_pred hhh
Confidence 763
No 50
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.49 E-value=4.8e-13 Score=127.61 Aligned_cols=164 Identities=16% Similarity=0.221 Sum_probs=115.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee---cCccEEEEEECCHHHHHHHHHHhcCccccccccccceeccc
Q 046223 81 PTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER---LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPY 157 (408)
Q Consensus 81 ~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~---~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~~ 157 (408)
....|-+.+|||++|++||.++|+.++ |+.+.+.+ +..|-|||+|.+.|++++|++. +-..|. .| -|.| |
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg--~R--YIEV-f 81 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALKK-DRESMG--HR--YIEV-F 81 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHHh-hHHHhC--Cc--eEEE-E
Confidence 345677899999999999999999998 88887776 5689999999999999999973 333322 33 1222 2
Q ss_pred cCccccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCCCCCCCCceEEEcCCC
Q 046223 158 SSGLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDGNNQGTIVVFNLD 237 (408)
Q Consensus 158 s~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~l~V~nLp 237 (408)
.... ...+ |.-.... .........|.+.+||
T Consensus 82 ~~~~-------~e~d--------------------------------------~~~~~~g----~~s~~~d~vVRLRGLP 112 (510)
T KOG4211|consen 82 TAGG-------AEAD--------------------------------------WVMRPGG----PNSSANDGVVRLRGLP 112 (510)
T ss_pred ccCC-------cccc--------------------------------------ccccCCC----CCCCCCCceEEecCCC
Confidence 1100 0000 0000000 0011235789999999
Q ss_pred CCCcHHHHHHHHhcCCCcee-e----ccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 046223 238 SGVSSSTLKEIFQAFGPVKE-L----RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSR 301 (408)
Q Consensus 238 ~~~t~~~L~~~F~~~G~v~~-v----~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 301 (408)
+.+|++||.++|+..-.|.. + ...++..|-|||+|++.+.|++|+. -|...|+.|-|.|-.+.
T Consensus 113 fscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 113 FSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRSS 180 (510)
T ss_pred ccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehhH
Confidence 99999999999987643333 1 3455678999999999999999987 57777888888887664
No 51
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=5.1e-14 Score=110.69 Aligned_cols=77 Identities=22% Similarity=0.339 Sum_probs=71.4
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhcCCCceee-----ccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 046223 227 NQGTIVVFNLDSGVSSSTLKEIFQAFGPVKEL-----RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSR 301 (408)
Q Consensus 227 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v-----~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 301 (408)
.+++|||+||++.++||+|.++|++.|+|..| +.+...+||+||+|.+.++|..|++.++|+.++.+.|+|.|..
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 36999999999999999999999999999998 5666789999999999999999999999999999999999976
Q ss_pred CC
Q 046223 302 PG 303 (408)
Q Consensus 302 ~~ 303 (408)
.-
T Consensus 115 GF 116 (153)
T KOG0121|consen 115 GF 116 (153)
T ss_pred cc
Confidence 43
No 52
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.48 E-value=1.2e-13 Score=132.65 Aligned_cols=79 Identities=27% Similarity=0.546 Sum_probs=72.3
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFS 300 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a 300 (408)
...++|||+|||+++|+++|+++|+.||.|++|+ .+++++|||||+|.++++|++|++.|||..+.+++|+|.++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 3468999999999999999999999999998883 46778899999999999999999999999999999999999
Q ss_pred cCCC
Q 046223 301 RPGG 304 (408)
Q Consensus 301 ~~~~ 304 (408)
++..
T Consensus 185 ~p~~ 188 (346)
T TIGR01659 185 RPGG 188 (346)
T ss_pred cccc
Confidence 7643
No 53
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=1.1e-13 Score=120.78 Aligned_cols=79 Identities=32% Similarity=0.577 Sum_probs=74.4
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhcCCCceee-----ccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEE
Q 046223 225 GNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKEL-----RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEF 299 (408)
Q Consensus 225 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v-----~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 299 (408)
..+..+|.|.||+.++++++|+++|.+||.|..+ +.+|.++|||||.|.+.++|++||+.|||.-++.-.|+|+|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 3467899999999999999999999999999988 57999999999999999999999999999999999999999
Q ss_pred ecCC
Q 046223 300 SRPG 303 (408)
Q Consensus 300 a~~~ 303 (408)
++|+
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9885
No 54
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.48 E-value=1.4e-13 Score=134.11 Aligned_cols=77 Identities=19% Similarity=0.440 Sum_probs=71.5
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q 046223 228 QGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRP 302 (408)
Q Consensus 228 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 302 (408)
..+|||+|||.++++++|+++|+.||.|.+|+ .+++++|||||+|.+.++|++|++.|||..|.|+.|+|+|+++
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 48999999999999999999999999999883 4577899999999999999999999999999999999999976
Q ss_pred CC
Q 046223 303 GG 304 (408)
Q Consensus 303 ~~ 304 (408)
..
T Consensus 83 ~~ 84 (352)
T TIGR01661 83 SS 84 (352)
T ss_pred cc
Confidence 54
No 55
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.46 E-value=7.4e-12 Score=115.34 Aligned_cols=225 Identities=16% Similarity=0.157 Sum_probs=153.0
Q ss_pred CCCCCCEEEEc--CCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceec
Q 046223 78 STGPTRTLVLS--YVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKN 155 (408)
Q Consensus 78 ~~~~~rtlfV~--nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~ 155 (408)
...++..|.+. |-=+.+|-+-|+.+....|+|..|.|.+++.=.|.|+|++.+.|++|.+.|||..|.-+.. .|++
T Consensus 116 s~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCC--TLKI 193 (494)
T KOG1456|consen 116 SATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCC--TLKI 193 (494)
T ss_pred CCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccce--eEEE
Confidence 34455666655 4456799999999999999999999998877789999999999999999999999987776 4667
Q ss_pred cccCccc--cccCCCCCCCcccCCC----ChhHHHHHHhhhhccCCCCCCCcCCCCCCCCc----cccccCCcC------
Q 046223 156 PYSSGLM--LMNNDNNNNNLATGCY----DNQVVAESLMIMNSYAPVLPPPARGLVAGRPV----WAQFIVPTC------ 219 (408)
Q Consensus 156 ~~s~~~s--~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~p~~------ 219 (408)
+|+++.. |.+.+....++....+ +...-.-.......+..-.+...++...+-.. ......|..
T Consensus 194 eyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~ 273 (494)
T KOG1456|consen 194 EYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYR 273 (494)
T ss_pred EecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccc
Confidence 7888766 6666655554432221 11100000000000000000000000000000 000000100
Q ss_pred -----CCCCCCCCCceEEEcCCCCC-CcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCe
Q 046223 220 -----NAVPDGNNQGTIVVFNLDSG-VSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGK 293 (408)
Q Consensus 220 -----~~~~~~~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 293 (408)
.......+...+.|.+|... ++-+.|.++|..||.|+.|++.....|.|.|++.|..+.++|+..||+..+.|.
T Consensus 274 ~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~ 353 (494)
T KOG1456|consen 274 DGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGG 353 (494)
T ss_pred cCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccc
Confidence 01123445788999999874 678899999999999999988878889999999999999999999999999999
Q ss_pred EEEEEEecCCC
Q 046223 294 HVVIEFSRPGG 304 (408)
Q Consensus 294 ~l~v~~a~~~~ 304 (408)
+|.|.+++...
T Consensus 354 kl~v~~SkQ~~ 364 (494)
T KOG1456|consen 354 KLNVCVSKQNF 364 (494)
T ss_pred eEEEeeccccc
Confidence 99999987653
No 56
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.45 E-value=4.2e-13 Score=135.54 Aligned_cols=137 Identities=16% Similarity=0.179 Sum_probs=94.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcc--CCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceecccc
Q 046223 81 PTRTLVLSYVPGDVSETIVRRDLEVF--GEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPYS 158 (408)
Q Consensus 81 ~~rtlfV~nLp~~vte~~L~~~F~~~--G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~~s 158 (408)
..++|||+||+.++||++|+++|++| |+|+.|.++ ++||||+|.+.++|++|++.|||..|. |+ .|++.|+
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~---rgfAFVeF~s~e~A~kAi~~lnG~~i~--Gr--~I~V~~A 304 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI---RDYAFVHFEDREDAVKAMDELNGKELE--GS--EIEVTLA 304 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee---cCeEEEEeCCHHHHHHHHHHhCCCEEC--CE--EEEEEEc
Confidence 45789999999999999999999999 999999875 689999999999999999999999876 66 4666665
Q ss_pred CccccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCCCCCCCCceEEEcCCCC
Q 046223 159 SGLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDGNNQGTIVVFNLDS 238 (408)
Q Consensus 159 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~l~V~nLp~ 238 (408)
..... .... +. .++. .++....+... ......-.....+++++|+++
T Consensus 305 kp~~~----~~~~-----~~----------------------~rg~-gg~~~~~~~~~-~~~g~~~sp~s~~~~~g~~~~ 351 (578)
T TIGR01648 305 KPVDK----KSYV-----RY----------------------TRGT-GGRGKERQAAR-QSLGQVYDPASRSLAYEDYYY 351 (578)
T ss_pred cCCCc----cccc-----cc----------------------cccc-CCCcccccccc-cccCcccCccccccccccccc
Confidence 42210 0000 00 0000 00000000000 000001122358999999999
Q ss_pred CCcHHHHHHHHhcCCCcee
Q 046223 239 GVSSSTLKEIFQAFGPVKE 257 (408)
Q Consensus 239 ~~t~~~L~~~F~~~G~v~~ 257 (408)
+.+++.+.++|..+|.|..
T Consensus 352 ~~~~~~~~~~f~~~g~~~~ 370 (578)
T TIGR01648 352 HPPYAPSLHFPRMPGPIRG 370 (578)
T ss_pred cccccchhhccccCccccC
Confidence 9999999999999998754
No 57
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.43 E-value=1.1e-12 Score=119.06 Aligned_cols=73 Identities=19% Similarity=0.212 Sum_probs=65.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee---cCccEEEEEECCHHHHHHHHHHhcCccccccccccce
Q 046223 79 TGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER---LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGL 153 (408)
Q Consensus 79 ~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~---~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~ 153 (408)
....+.|+|+|||+..-|-||+.+|++||.|.+|.|+. -+||||||+|++.+||++|.++|||..+. ||.|.+
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VE--GRkIEV 168 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVE--GRKIEV 168 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceee--ceEEEE
Confidence 33457899999999999999999999999999999885 57999999999999999999999999987 884333
No 58
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.42 E-value=7.3e-12 Score=115.37 Aligned_cols=177 Identities=19% Similarity=0.195 Sum_probs=129.4
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceecc
Q 046223 77 PSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNP 156 (408)
Q Consensus 77 ~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~ 156 (408)
+...++-.|.|++|-..++|.+|.+.++.||.|..|..+. .+..|.|+|+|++.|++++...-...+...|. ..-..
T Consensus 26 hk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P-~~r~alvefedi~~akn~Vnfaa~n~i~i~gq--~Al~N 102 (494)
T KOG1456|consen 26 HKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMP-HKRQALVEFEDIEGAKNCVNFAADNQIYIAGQ--QALFN 102 (494)
T ss_pred CCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEecc-ccceeeeeeccccchhhheehhccCcccccCc--hhhcc
Confidence 5566778999999999999999999999999999988774 57789999999999999997544333332222 11112
Q ss_pred ccCccccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCCCCCCCCceEEEc--
Q 046223 157 YSSGLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDGNNQGTIVVF-- 234 (408)
Q Consensus 157 ~s~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~l~V~-- 234 (408)
|+... ....+. .+....++.|.+.
T Consensus 103 yStsq---------------------------------------------------~i~R~g---~es~~pN~VLl~TIl 128 (494)
T KOG1456|consen 103 YSTSQ---------------------------------------------------CIERPG---DESATPNKVLLFTIL 128 (494)
T ss_pred cchhh---------------------------------------------------hhccCC---CCCCCCCeEEEEEee
Confidence 22100 000000 1112234555544
Q ss_pred CCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeC--CeEEEEEEecCCCCCCCcc
Q 046223 235 NLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIY--GKHVVIEFSRPGGHSKKFF 310 (408)
Q Consensus 235 nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~--g~~l~v~~a~~~~~~~~~~ 310 (408)
|--+.+|.+-|..++...|.|..|....+..-.|.|+|++.+.|++|.+.|||..|. ..+|+|+||++.+.+..+.
T Consensus 129 Np~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV~kn 206 (494)
T KOG1456|consen 129 NPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLNVQKN 206 (494)
T ss_pred cCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcceeeeeec
Confidence 555679999999999999999999655566667999999999999999999999875 4799999999977654433
No 59
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.42 E-value=7.6e-13 Score=119.17 Aligned_cols=74 Identities=22% Similarity=0.306 Sum_probs=66.9
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhcCCCceeecc--CCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q 046223 228 QGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRE--TPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRP 302 (408)
Q Consensus 228 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~--~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 302 (408)
.++|||+||++.+|+++|+++|+.||.|++|+. .+..+|||||+|++.++|+.|+. |||..|.|+.|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 489999999999999999999999999999942 23357999999999999999996 999999999999999753
No 60
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=2.4e-12 Score=118.14 Aligned_cols=66 Identities=21% Similarity=0.293 Sum_probs=59.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCcccc
Q 046223 80 GPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQ 145 (408)
Q Consensus 80 ~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~ 145 (408)
+.-..|||..+.++.+|+||+.+|+.||+|..|.+.+ .+|||+||+|.+..+-..||..||-..+.
T Consensus 208 k~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLG 278 (544)
T KOG0124|consen 208 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLG 278 (544)
T ss_pred HhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcc
Confidence 3456899999999999999999999999999999976 67999999999999999999999875443
No 61
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.41 E-value=3.9e-13 Score=114.33 Aligned_cols=77 Identities=29% Similarity=0.485 Sum_probs=71.7
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhcCCCceee-----ccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEE
Q 046223 225 GNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKEL-----RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEF 299 (408)
Q Consensus 225 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v-----~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 299 (408)
.+...+|.|-||.+.++.++|..+|++||.|-+| +.+..++|||||.|.+..+|+.|+++|+|..|+|+.|.|++
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 3445789999999999999999999999999988 46888999999999999999999999999999999999999
Q ss_pred ec
Q 046223 300 SR 301 (408)
Q Consensus 300 a~ 301 (408)
|+
T Consensus 90 ar 91 (256)
T KOG4207|consen 90 AR 91 (256)
T ss_pred hh
Confidence 86
No 62
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.41 E-value=7.6e-13 Score=119.18 Aligned_cols=69 Identities=25% Similarity=0.271 Sum_probs=61.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeec--CccEEEEEECCHHHHHHHHHHhcCccccccccccce
Q 046223 82 TRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERL--MEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGL 153 (408)
Q Consensus 82 ~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~--~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~ 153 (408)
.++|||+||++++||++|+++|+.||+|.+|.|.+. .+|||||+|.+.++|+.|+. |+|..|. ||.|.+
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~--gr~V~V 74 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIV--DQSVTI 74 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeC--CceEEE
Confidence 689999999999999999999999999999999863 58999999999999999995 9999886 664333
No 63
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.40 E-value=1.2e-12 Score=99.25 Aligned_cols=76 Identities=16% Similarity=0.233 Sum_probs=66.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee--cCccEEEEEECCHHHHHHHHHHhcCccccccccccceecc
Q 046223 79 TGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER--LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNP 156 (408)
Q Consensus 79 ~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~--~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~ 156 (408)
...++-|||.|||+++|.++..++|.+||.|..|++-. ..+|.|||.|+++.+|++|++.|+|..+. ++ .+.+.
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~--~r--yl~vl 90 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVD--NR--YLVVL 90 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccC--Cc--eEEEE
Confidence 34678999999999999999999999999999999854 56999999999999999999999998765 55 45555
Q ss_pred cc
Q 046223 157 YS 158 (408)
Q Consensus 157 ~s 158 (408)
|-
T Consensus 91 yy 92 (124)
T KOG0114|consen 91 YY 92 (124)
T ss_pred ec
Confidence 53
No 64
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.40 E-value=1.3e-12 Score=96.03 Aligned_cols=66 Identities=32% Similarity=0.597 Sum_probs=58.4
Q ss_pred EEEcCCCCCCcHHHHHHHHhcCCCceeec----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 046223 231 IVVFNLDSGVSSSTLKEIFQAFGPVKELR----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVV 296 (408)
Q Consensus 231 l~V~nLp~~~t~~~L~~~F~~~G~v~~v~----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~ 296 (408)
|||+|||.++++++|+++|+.||.|..+. ..+..+++|||+|.+.++|.+|++.++|..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999998883 2255689999999999999999999999999999985
No 65
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.39 E-value=1.5e-12 Score=98.68 Aligned_cols=78 Identities=21% Similarity=0.440 Sum_probs=70.8
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhcCCCceeec--cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCCC
Q 046223 227 NQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR--ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGG 304 (408)
Q Consensus 227 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~--~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 304 (408)
.++.|||.|||+++|.|++.++|.+||.|..|+ .+..-+|.|||.|++..+|.+|++.|+|..++++-+.|-+-.+..
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~~ 96 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPED 96 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHHH
Confidence 358999999999999999999999999999995 344568999999999999999999999999999999999877654
No 66
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.39 E-value=1.4e-12 Score=95.91 Aligned_cols=61 Identities=21% Similarity=0.335 Sum_probs=54.6
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeEEEEEeec----CccEEEEEECCHHHHHHHHHHhcCcccc
Q 046223 85 LVLSYVPGDVSETIVRRDLEVFGEVRGVQMERL----MEGIVTVHFYDLRHAEMAFKEIREQHMQ 145 (408)
Q Consensus 85 lfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~----~kG~afV~F~~~~~A~~Ai~~lng~~i~ 145 (408)
|||+|||+++++++|+++|+.||.|..|.+... .+|+|||+|.+.++|++|++.++|..|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~ 65 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEID 65 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEEC
Confidence 799999999999999999999999999999874 4899999999999999999999887765
No 67
>PLN03213 repressor of silencing 3; Provisional
Probab=99.38 E-value=1.3e-12 Score=124.26 Aligned_cols=75 Identities=21% Similarity=0.301 Sum_probs=68.8
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhcCCCceee---ccCCCCccEEEEEECCH--HHHHHHHHHhCCceeCCeEEEEEEec
Q 046223 227 NQGTIVVFNLDSGVSSSTLKEIFQAFGPVKEL---RETPLKKHQRFIEFYDV--RDAAKALKEMNGQEIYGKHVVIEFSR 301 (408)
Q Consensus 227 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v---~~~~~~~g~afV~F~~~--~~A~~A~~~l~g~~~~g~~l~v~~a~ 301 (408)
...+||||||++.++++||+.+|+.||.|..| +.++ +|||||+|.+. .++.+||..|||..|.|+.|+|..|+
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 35899999999999999999999999999988 4454 99999999987 78999999999999999999999998
Q ss_pred CC
Q 046223 302 PG 303 (408)
Q Consensus 302 ~~ 303 (408)
+.
T Consensus 87 P~ 88 (759)
T PLN03213 87 EH 88 (759)
T ss_pred HH
Confidence 63
No 68
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=1.4e-12 Score=127.66 Aligned_cols=185 Identities=15% Similarity=0.260 Sum_probs=123.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCccccccccccceec
Q 046223 81 PTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKN 155 (408)
Q Consensus 81 ~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~ 155 (408)
....+||++||..++++++.++.+.||.+....++. .++||||.+|.+......|++.|||+.+. ++.|....
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lg--d~~lvvq~ 365 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLG--DKKLVVQR 365 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhc--CceeEeeh
Confidence 445799999999999999999999999999977765 56999999999999999999999998765 55433333
Q ss_pred cccCccccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCCCCCCCCceEEEcC
Q 046223 156 PYSSGLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDGNNQGTIVVFN 235 (408)
Q Consensus 156 ~~s~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~l~V~n 235 (408)
.+.....+. .... +. .. .+. .++.............|.+.|
T Consensus 366 A~~g~~~~~------~~~~---~~--------------~~--------~~~--------~i~~~~~q~~g~~t~Vl~L~n 406 (500)
T KOG0120|consen 366 AIVGASNAN------VNFN---IS--------------QS--------QVP--------GIPLLMTQMAGIPTEVLCLTN 406 (500)
T ss_pred hhccchhcc------ccCC---cc--------------cc--------ccc--------cchhhhcccCCCcchhhhhhh
Confidence 222211000 0000 00 00 000 000000011122234455554
Q ss_pred CCC--CC-cH-------HHHHHHHhcCCCceeec--------cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEE
Q 046223 236 LDS--GV-SS-------STLKEIFQAFGPVKELR--------ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVI 297 (408)
Q Consensus 236 Lp~--~~-t~-------~~L~~~F~~~G~v~~v~--------~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v 297 (408)
+=. ++ .+ |+++..|++||.|..|. ......|..||+|.+.+++++|+++|+|++|.||.|..
T Consensus 407 ~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvt 486 (500)
T KOG0120|consen 407 VVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVA 486 (500)
T ss_pred cCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEE
Confidence 411 11 11 45666778999999982 22345678999999999999999999999999999999
Q ss_pred EEecCCCCC
Q 046223 298 EFSRPGGHS 306 (408)
Q Consensus 298 ~~a~~~~~~ 306 (408)
.|..+....
T Consensus 487 sYydeDkY~ 495 (500)
T KOG0120|consen 487 SYYDEDKYH 495 (500)
T ss_pred EecCHHHhh
Confidence 998765443
No 69
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=1.1e-12 Score=103.22 Aligned_cols=71 Identities=17% Similarity=0.210 Sum_probs=62.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCcccccccccc
Q 046223 79 TGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSY 151 (408)
Q Consensus 79 ~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l 151 (408)
-..+.|||||||+..++|++|.++|+++|+|+.|.|-- ..-|||||+|.+.++|+.|++.++|..++ .|.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLd--dr~i 108 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLD--DRPI 108 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCccc--ccce
Confidence 35688999999999999999999999999999987632 34799999999999999999999998876 6643
No 70
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=1.6e-12 Score=113.53 Aligned_cols=77 Identities=19% Similarity=0.262 Sum_probs=69.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCcccccccccccee
Q 046223 80 GPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLK 154 (408)
Q Consensus 80 ~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~ 154 (408)
.+..+|=|.||+.+++|++|+++|..||.|..|.+.+ .+||||||.|.+.++|.+||+.|||.-++ .|.|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd----~LILr 262 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYD----NLILR 262 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccc----eEEEE
Confidence 3677899999999999999999999999999999887 56999999999999999999999998776 56788
Q ss_pred ccccCc
Q 046223 155 NPYSSG 160 (408)
Q Consensus 155 ~~~s~~ 160 (408)
+.|+++
T Consensus 263 vEwskP 268 (270)
T KOG0122|consen 263 VEWSKP 268 (270)
T ss_pred EEecCC
Confidence 888763
No 71
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1.2e-12 Score=112.22 Aligned_cols=80 Identities=28% Similarity=0.522 Sum_probs=74.5
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhcCCCceee-----ccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 046223 227 NQGTIVVFNLDSGVSSSTLKEIFQAFGPVKEL-----RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSR 301 (408)
Q Consensus 227 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v-----~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 301 (408)
..++||||+|...++|.-|...|-.||.|.+| ...++.+|||||+|...|+|.+|+..||+.+|.||.|+|.+|+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 35899999999999999999999999999999 3677899999999999999999999999999999999999999
Q ss_pred CCCCC
Q 046223 302 PGGHS 306 (408)
Q Consensus 302 ~~~~~ 306 (408)
|.+.+
T Consensus 89 P~kik 93 (298)
T KOG0111|consen 89 PEKIK 93 (298)
T ss_pred Ccccc
Confidence 87544
No 72
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.33 E-value=1.9e-12 Score=112.80 Aligned_cols=75 Identities=28% Similarity=0.364 Sum_probs=67.7
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhcCCCceee-----ccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q 046223 228 QGTIVVFNLDSGVSSSTLKEIFQAFGPVKEL-----RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRP 302 (408)
Q Consensus 228 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v-----~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 302 (408)
-.+||||||++.+..++|++.|++||+|++. +.++++||||||+|.|.++|.+|++..| -.|+||+..+++|.-
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccchhhh
Confidence 4789999999999999999999999999887 5789999999999999999999998554 568999999999865
Q ss_pred C
Q 046223 303 G 303 (408)
Q Consensus 303 ~ 303 (408)
.
T Consensus 91 g 91 (247)
T KOG0149|consen 91 G 91 (247)
T ss_pred c
Confidence 3
No 73
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.33 E-value=8.2e-12 Score=112.09 Aligned_cols=79 Identities=30% Similarity=0.528 Sum_probs=73.7
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhcCCCceee-----ccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEE
Q 046223 225 GNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKEL-----RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEF 299 (408)
Q Consensus 225 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v-----~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 299 (408)
.++-+||||+-|+++++|.+|+..|++||.|+.| ..+++++|||||+|+++.+...|.+..+|.+|+|+.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 4567999999999999999999999999999999 37899999999999999999999999999999999999999
Q ss_pred ecCC
Q 046223 300 SRPG 303 (408)
Q Consensus 300 a~~~ 303 (408)
-+..
T Consensus 178 ERgR 181 (335)
T KOG0113|consen 178 ERGR 181 (335)
T ss_pred cccc
Confidence 7644
No 74
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.32 E-value=1.5e-11 Score=114.72 Aligned_cols=136 Identities=19% Similarity=0.228 Sum_probs=95.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCccccccccccceecc
Q 046223 82 TRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNP 156 (408)
Q Consensus 82 ~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~ 156 (408)
..+|||+||+.++|+++|+++|.+||.|..|.+.. .++|||||+|.+.++|..|++.++|..|. |+. +++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~--~~~--~~v~ 190 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELE--GRP--LRVQ 190 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeEC--Cce--eEee
Confidence 69999999999999999999999999998887764 56999999999999999999999998776 674 4443
Q ss_pred ccCccccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCCCCCCCCceEEEcCC
Q 046223 157 YSSGLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDGNNQGTIVVFNL 236 (408)
Q Consensus 157 ~s~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~l~V~nL 236 (408)
+.... ...+...... ........ ..............++++++
T Consensus 191 ~~~~~------------~~~~~~~~~~----------------~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 233 (306)
T COG0724 191 KAQPA------------SQPRSELSNN----------------LDASFAKK---------LSRGKALLLEKSDNLYVGNL 233 (306)
T ss_pred ccccc------------cccccccccc----------------cchhhhcc---------ccccccccccccceeecccc
Confidence 32100 0000000000 00000000 00001112334588999999
Q ss_pred CCCCcHHHHHHHHhcCCCceee
Q 046223 237 DSGVSSSTLKEIFQAFGPVKEL 258 (408)
Q Consensus 237 p~~~t~~~L~~~F~~~G~v~~v 258 (408)
+..++..++...|..+|.+..+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~ 255 (306)
T COG0724 234 PLKTAEEELADLFKSRGDIVRA 255 (306)
T ss_pred ccccchhHHHHhccccccceee
Confidence 9999999999999999999666
No 75
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.32 E-value=5.1e-12 Score=112.01 Aligned_cols=64 Identities=17% Similarity=0.102 Sum_probs=59.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee--cCccEEEEEECCHHHHHHHHHHhcCcccc
Q 046223 81 PTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER--LMEGIVTVHFYDLRHAEMAFKEIREQHMQ 145 (408)
Q Consensus 81 ~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~--~~kG~afV~F~~~~~A~~Ai~~lng~~i~ 145 (408)
...+|||+||++.+||++|+++|+.||+|.+|+|.+ +.+|||||+|.+.++|+.|+ .|+|..|.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~ 69 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIV 69 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeC
Confidence 457999999999999999999999999999999987 45789999999999999999 69999986
No 76
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.32 E-value=9.2e-12 Score=87.23 Aligned_cols=56 Identities=32% Similarity=0.641 Sum_probs=50.2
Q ss_pred HHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 046223 245 LKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFS 300 (408)
Q Consensus 245 L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a 300 (408)
|+++|++||.|.++......+++|||+|.+.++|++|++.|||..++|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999654444699999999999999999999999999999999986
No 77
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.31 E-value=4.4e-12 Score=100.71 Aligned_cols=79 Identities=22% Similarity=0.448 Sum_probs=73.0
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhcCCCceee-----ccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 046223 227 NQGTIVVFNLDSGVSSSTLKEIFQAFGPVKEL-----RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSR 301 (408)
Q Consensus 227 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v-----~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 301 (408)
....|||.++...+++++|.+.|..||+|+.+ +.++..+|||+|+|++.++|++|+.+|||..|.|+.|.|.|+-
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 35789999999999999999999999999999 5688899999999999999999999999999999999999986
Q ss_pred CCCC
Q 046223 302 PGGH 305 (408)
Q Consensus 302 ~~~~ 305 (408)
.++.
T Consensus 151 v~gp 154 (170)
T KOG0130|consen 151 VKGP 154 (170)
T ss_pred ecCC
Confidence 5443
No 78
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=8.8e-12 Score=111.89 Aligned_cols=82 Identities=20% Similarity=0.354 Sum_probs=71.6
Q ss_pred CCCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCccccccc
Q 046223 74 LPPPSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQ 148 (408)
Q Consensus 74 ~p~~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~g 148 (408)
.+.....+-+||||+-|+++++|.+|+..|+.||+|+.|.|++ +++|||||+|+++.+...|.+..+|..|. +
T Consensus 93 dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Id--g 170 (335)
T KOG0113|consen 93 DPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKID--G 170 (335)
T ss_pred CCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceec--C
Confidence 4445667899999999999999999999999999999999987 68999999999999999999999998876 6
Q ss_pred cccceeccccC
Q 046223 149 QSYGLKNPYSS 159 (408)
Q Consensus 149 r~l~~~~~~s~ 159 (408)
+ .|.|+|..
T Consensus 171 r--ri~VDvER 179 (335)
T KOG0113|consen 171 R--RILVDVER 179 (335)
T ss_pred c--EEEEEecc
Confidence 6 45555543
No 79
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=5.3e-12 Score=105.68 Aligned_cols=78 Identities=29% Similarity=0.505 Sum_probs=69.9
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhcCCCceeec--cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCCC
Q 046223 227 NQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR--ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGG 304 (408)
Q Consensus 227 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~--~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 304 (408)
..++|||+|||.++.+.||+++|.+||.|..|. .......||||+|++..+|+.||..-+|..++|..|+|+|+....
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprggr 84 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGR 84 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCCC
Confidence 358999999999999999999999999999994 223346799999999999999999999999999999999997654
No 80
>PLN03213 repressor of silencing 3; Provisional
Probab=99.30 E-value=7.2e-12 Score=119.18 Aligned_cols=72 Identities=14% Similarity=0.101 Sum_probs=63.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-cCccEEEEEECCH--HHHHHHHHHhcCccccccccccce
Q 046223 80 GPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-LMEGIVTVHFYDL--RHAEMAFKEIREQHMQLQQQSYGL 153 (408)
Q Consensus 80 ~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-~~kG~afV~F~~~--~~A~~Ai~~lng~~i~~~gr~l~~ 153 (408)
....+||||||++++|+++|+.+|..||.|..|.|++ ..||||||+|.+. .++.+||+.|||..+. ||.|++
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWK--GR~LKV 82 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWK--GGRLRL 82 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeec--CceeEE
Confidence 3457899999999999999999999999999999997 4499999999987 7899999999999987 664333
No 81
>smart00362 RRM_2 RNA recognition motif.
Probab=99.29 E-value=1.8e-11 Score=89.46 Aligned_cols=69 Identities=35% Similarity=0.586 Sum_probs=62.1
Q ss_pred eEEEcCCCCCCcHHHHHHHHhcCCCceeeccC---CCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEE
Q 046223 230 TIVVFNLDSGVSSSTLKEIFQAFGPVKELRET---PLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIE 298 (408)
Q Consensus 230 ~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~---~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~ 298 (408)
+|+|+|||..+++++|+++|..||.|..+... +..+++|||+|.+.++|++|++.++|..+.|+.|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999888322 4457999999999999999999999999999999873
No 82
>smart00362 RRM_2 RNA recognition motif.
Probab=99.28 E-value=1.9e-11 Score=89.33 Aligned_cols=62 Identities=24% Similarity=0.401 Sum_probs=56.9
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeec---CccEEEEEECCHHHHHHHHHHhcCcccc
Q 046223 84 TLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERL---MEGIVTVHFYDLRHAEMAFKEIREQHMQ 145 (408)
Q Consensus 84 tlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~---~kG~afV~F~~~~~A~~Ai~~lng~~i~ 145 (408)
+|||+|||.++++++|+++|++||.|..+.+... ++|+|||+|.+.++|++|++.++|..+.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~ 65 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLG 65 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEEC
Confidence 5899999999999999999999999999988764 3799999999999999999999987764
No 83
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=5.3e-12 Score=109.99 Aligned_cols=59 Identities=22% Similarity=0.241 Sum_probs=53.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhc
Q 046223 82 TRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIR 140 (408)
Q Consensus 82 ~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~ln 140 (408)
-..||||+|+|+++.++|++.|++||+|.+..++. ++||||||+|.|.++|.+|++.-|
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~ 75 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN 75 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC
Confidence 45799999999999999999999999999966654 789999999999999999997543
No 84
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.26 E-value=2.3e-11 Score=107.86 Aligned_cols=74 Identities=18% Similarity=0.240 Sum_probs=66.4
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhcCCCceeec--cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q 046223 228 QGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR--ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRP 302 (408)
Q Consensus 228 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~--~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 302 (408)
..+|||+||++.+|+++|+++|+.||.|.+|+ ..+..+++|||+|++.++|+.|+. |+|..|.++.|.|.....
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQ 80 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcc
Confidence 47999999999999999999999999999993 345567899999999999999995 999999999999987643
No 85
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.25 E-value=3.7e-10 Score=106.26 Aligned_cols=72 Identities=22% Similarity=0.363 Sum_probs=65.3
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhcCCCceeecc--CCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 046223 227 NQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRE--TPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFS 300 (408)
Q Consensus 227 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~--~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a 300 (408)
..++|||.|||+++|++.|++-|..||.|..+.. .++++| .|.|.+.++|++|+..|+|..+.||.|+|.|.
T Consensus 535 Ka~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 535 KACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred cccEEEEecCCccccHHHHHHHHHhccceehhhhhccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 4688999999999999999999999999998864 555555 99999999999999999999999999999873
No 86
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.25 E-value=1.3e-11 Score=105.22 Aligned_cols=79 Identities=25% Similarity=0.352 Sum_probs=68.4
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCccccccccc
Q 046223 76 PPSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQS 150 (408)
Q Consensus 76 ~~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~ 150 (408)
+++...-.+|-|-||-+.++.++|+.+|++||.|-+|.|.+ .++|||||.|.+..+|+.|+++|+|..|+ |+
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ld--gR- 83 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLD--GR- 83 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeec--cc-
Confidence 34555667899999999999999999999999999999986 67999999999999999999999998876 77
Q ss_pred cceecccc
Q 046223 151 YGLKNPYS 158 (408)
Q Consensus 151 l~~~~~~s 158 (408)
.|+|.++
T Consensus 84 -elrVq~a 90 (256)
T KOG4207|consen 84 -ELRVQMA 90 (256)
T ss_pred -eeeehhh
Confidence 4555443
No 87
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.21 E-value=2.1e-11 Score=102.02 Aligned_cols=76 Identities=36% Similarity=0.464 Sum_probs=70.8
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCceee-----ccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKEL-----RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFS 300 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v-----~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a 300 (408)
+...+|||+||+..++++.|+++|-+.|.|..+ +.+...+|||||+|.++|+|+-|++.||..++.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 345899999999999999999999999999998 456678999999999999999999999999999999999998
Q ss_pred c
Q 046223 301 R 301 (408)
Q Consensus 301 ~ 301 (408)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 7
No 88
>smart00360 RRM RNA recognition motif.
Probab=99.20 E-value=6.1e-11 Score=86.24 Aligned_cols=66 Identities=36% Similarity=0.611 Sum_probs=59.3
Q ss_pred EcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEE
Q 046223 233 VFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIE 298 (408)
Q Consensus 233 V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~ 298 (408)
|+||+..+++++|+++|+.||.|..+. ..+..+++|||+|.+.++|.+|++.|++..+.|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 579999999999999999999998883 235568999999999999999999999999999999873
No 89
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.19 E-value=2e-12 Score=108.02 Aligned_cols=75 Identities=19% Similarity=0.383 Sum_probs=70.4
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhcCCCceee-----ccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 046223 227 NQGTIVVFNLDSGVSSSTLKEIFQAFGPVKEL-----RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSR 301 (408)
Q Consensus 227 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v-----~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 301 (408)
++.-|||||||+.+||.||..+|++||+|..| ..+|+++||||+.|++..+..-|+..|||..|.||.|+|.-..
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 45789999999999999999999999999999 4799999999999999999999999999999999999998653
No 90
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.19 E-value=1.2e-10 Score=85.42 Aligned_cols=70 Identities=40% Similarity=0.632 Sum_probs=62.7
Q ss_pred eEEEcCCCCCCcHHHHHHHHhcCCCceeeccC----CCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEE
Q 046223 230 TIVVFNLDSGVSSSTLKEIFQAFGPVKELRET----PLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEF 299 (408)
Q Consensus 230 ~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~----~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 299 (408)
+|+|+|||..+++++|+++|..||.|..+... ...+++|||+|.+.++|..|++.+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999888322 23489999999999999999999999999999999874
No 91
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=1.2e-10 Score=109.94 Aligned_cols=77 Identities=26% Similarity=0.340 Sum_probs=70.3
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeC-CeEEEEEE
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIY-GKHVVIEF 299 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~-g~~l~v~~ 299 (408)
...+-||||.||.++.|+||.-+|++.|+|-+++ ..+.++|||||+|.+.++|++|++.||+.+|. |+.|.|+.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 3468999999999999999999999999999983 78899999999999999999999999999885 89998887
Q ss_pred ecC
Q 046223 300 SRP 302 (408)
Q Consensus 300 a~~ 302 (408)
+..
T Consensus 161 Sva 163 (506)
T KOG0117|consen 161 SVA 163 (506)
T ss_pred eee
Confidence 753
No 92
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.17 E-value=4.3e-11 Score=116.61 Aligned_cols=77 Identities=30% Similarity=0.468 Sum_probs=72.8
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhcCCCceee-----ccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCC
Q 046223 229 GTIVVFNLDSGVSSSTLKEIFQAFGPVKEL-----RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPG 303 (408)
Q Consensus 229 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v-----~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 303 (408)
+.|||||||+++++++|.++|+..|.|.++ +.+|+.+||||++|.+.++|..|++.|||.++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 889999999999999999999999999988 478999999999999999999999999999999999999999765
Q ss_pred CC
Q 046223 304 GH 305 (408)
Q Consensus 304 ~~ 305 (408)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 44
No 93
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.9e-11 Score=105.03 Aligned_cols=78 Identities=18% Similarity=0.317 Sum_probs=70.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCcccccccccccee
Q 046223 80 GPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLK 154 (408)
Q Consensus 80 ~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~ 154 (408)
...||||||+|..+|||.-|...|-.||+|..|.+.- +++|||||+|.-.|||..||..||+.+|. || .|+
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~--Gr--tir 83 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELF--GR--TIR 83 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhc--ce--eEE
Confidence 3578999999999999999999999999999998764 77999999999999999999999999988 77 577
Q ss_pred ccccCcc
Q 046223 155 NPYSSGL 161 (408)
Q Consensus 155 ~~~s~~~ 161 (408)
|+|+.+.
T Consensus 84 VN~AkP~ 90 (298)
T KOG0111|consen 84 VNLAKPE 90 (298)
T ss_pred EeecCCc
Confidence 7777644
No 94
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.17 E-value=1.2e-10 Score=114.21 Aligned_cols=187 Identities=18% Similarity=0.241 Sum_probs=135.3
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhcc-----------C-CeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCcc
Q 046223 76 PPSTGPTRTLVLSYVPGDVSETIVRRDLEVF-----------G-EVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQH 143 (408)
Q Consensus 76 ~~~~~~~rtlfV~nLp~~vte~~L~~~F~~~-----------G-~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~ 143 (408)
.......+.+||++++..++|+.+-.+|..- | .|..|.+. ..++|||++|.+.++|..|+. +++..
T Consensus 169 ~~~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n-~~~nfa~ie~~s~~~at~~~~-~~~~~ 246 (500)
T KOG0120|consen 169 SQATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLN-LEKNFAFIEFRSISEATEAMA-LDGII 246 (500)
T ss_pred cchhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeec-ccccceeEEecCCCchhhhhc-ccchh
Confidence 3456678899999999999999999998874 3 35666655 469999999999999999985 66644
Q ss_pred ccccccccceeccccCccccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCCC
Q 046223 144 MQLQQQSYGLKNPYSSGLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVP 223 (408)
Q Consensus 144 i~~~gr~l~~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~ 223 (408)
++|+.++++........ ..+- ...+. .......+....
T Consensus 247 --f~g~~~~~~r~~d~~~~-------------p~~~------------------------~~~~~---~~~~~~~~~~t~ 284 (500)
T KOG0120|consen 247 --FEGRPLKIRRPHDYQPV-------------PGIT------------------------LSPSQ---LGKVGLLPASTD 284 (500)
T ss_pred --hCCCCceecccccccCC-------------ccch------------------------hhhcc---ccccCCcccccC
Confidence 34666556553321000 0000 00000 000011111122
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHHhcCCCceee-----ccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEE
Q 046223 224 DGNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKEL-----RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIE 298 (408)
Q Consensus 224 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v-----~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~ 298 (408)
.......+||++|+..+++.+++++...||.+... ..++.++||||.+|.+......|+..|||..+++++|.|.
T Consensus 285 ~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq 364 (500)
T KOG0120|consen 285 VPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQ 364 (500)
T ss_pred cccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEee
Confidence 23445889999999999999999999999988766 3457899999999999999999999999999999999999
Q ss_pred EecCCCCC
Q 046223 299 FSRPGGHS 306 (408)
Q Consensus 299 ~a~~~~~~ 306 (408)
.|-.....
T Consensus 365 ~A~~g~~~ 372 (500)
T KOG0120|consen 365 RAIVGASN 372 (500)
T ss_pred hhhccchh
Confidence 99776543
No 95
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.16 E-value=3.3e-12 Score=106.65 Aligned_cols=75 Identities=12% Similarity=0.232 Sum_probs=67.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCccccccccccce
Q 046223 79 TGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGL 153 (408)
Q Consensus 79 ~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~ 153 (408)
-..+.-|||||||++.||.||..+|++||+|..|.+++ +++||||+.|+|..+...|+..|||..|. ||.|++
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~--gRtirV 109 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKIL--GRTIRV 109 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceec--ceeEEe
Confidence 35678899999999999999999999999999999998 77999999999999999999999997766 885554
Q ss_pred ec
Q 046223 154 KN 155 (408)
Q Consensus 154 ~~ 155 (408)
-.
T Consensus 110 DH 111 (219)
T KOG0126|consen 110 DH 111 (219)
T ss_pred ee
Confidence 43
No 96
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.15 E-value=1e-10 Score=101.83 Aligned_cols=78 Identities=28% Similarity=0.587 Sum_probs=71.9
Q ss_pred CceEEEcCCCCCCcHHHHHH----HHhcCCCceee--ccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 046223 228 QGTIVVFNLDSGVSSSTLKE----IFQAFGPVKEL--RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSR 301 (408)
Q Consensus 228 ~~~l~V~nLp~~~t~~~L~~----~F~~~G~v~~v--~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 301 (408)
+.||||.||+..+..++|+. +|++||.|.+| ..+.+.+|.|||.|++.+.|..|++.|+|..+.|+.++|.||+
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~ 88 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAK 88 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheeccc
Confidence 45999999999999999887 99999999999 3577889999999999999999999999999999999999998
Q ss_pred CCCC
Q 046223 302 PGGH 305 (408)
Q Consensus 302 ~~~~ 305 (408)
.+..
T Consensus 89 s~sd 92 (221)
T KOG4206|consen 89 SDSD 92 (221)
T ss_pred Cccc
Confidence 7653
No 97
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.13 E-value=1.9e-10 Score=107.23 Aligned_cols=75 Identities=37% Similarity=0.636 Sum_probs=70.0
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhcCCCceee-----ccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q 046223 228 QGTIVVFNLDSGVSSSTLKEIFQAFGPVKEL-----RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRP 302 (408)
Q Consensus 228 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v-----~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 302 (408)
..+|||+||+..+++++|+++|..||.|..+ +.++..+|||||+|.+.++|..|++.++|..|.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5999999999999999999999999999777 24688999999999999999999999999999999999999754
No 98
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.13 E-value=3e-10 Score=83.29 Aligned_cols=62 Identities=31% Similarity=0.460 Sum_probs=57.0
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecC----ccEEEEEECCHHHHHHHHHHhcCcccc
Q 046223 84 TLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLM----EGIVTVHFYDLRHAEMAFKEIREQHMQ 145 (408)
Q Consensus 84 tlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~----kG~afV~F~~~~~A~~Ai~~lng~~i~ 145 (408)
+|+|+|||.++++++|+++|+.||.|..+.+.... +|+|||+|.+.++|..|++.+++..+.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~ 66 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELG 66 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 48999999999999999999999999999888633 899999999999999999999997754
No 99
>smart00360 RRM RNA recognition motif.
Probab=99.12 E-value=2.1e-10 Score=83.31 Aligned_cols=59 Identities=25% Similarity=0.439 Sum_probs=53.5
Q ss_pred EcCCCCCCCHHHHHHHhhccCCeEEEEEeec-----CccEEEEEECCHHHHHHHHHHhcCcccc
Q 046223 87 LSYVPGDVSETIVRRDLEVFGEVRGVQMERL-----MEGIVTVHFYDLRHAEMAFKEIREQHMQ 145 (408)
Q Consensus 87 V~nLp~~vte~~L~~~F~~~G~V~~v~~~~~-----~kG~afV~F~~~~~A~~Ai~~lng~~i~ 145 (408)
|+|||.++++++|+++|+.||.|..+.+... ++|+|||+|.+.++|.+|++.|++..+.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~ 64 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELD 64 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeC
Confidence 6899999999999999999999999988762 3799999999999999999999987764
No 100
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.12 E-value=1.8e-11 Score=105.23 Aligned_cols=142 Identities=22% Similarity=0.290 Sum_probs=112.1
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee---cCccEEEEEECCHHHHHHHHHHhcCccccccccccc
Q 046223 76 PPSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER---LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYG 152 (408)
Q Consensus 76 ~~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~---~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~ 152 (408)
++.....|||||+|+...|+|+-|.++|-+.|.|..|.|.. ...-||||.|.++-+...|++.+||..+. ++.+
T Consensus 3 aaaae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~--~~e~- 79 (267)
T KOG4454|consen 3 AAAAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLE--EDEE- 79 (267)
T ss_pred CCCcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhc--cchh-
Confidence 34455679999999999999999999999999999998875 12339999999999999999999996655 2210
Q ss_pred eeccccCccccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCCCCCCCCceEE
Q 046223 153 LKNPYSSGLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDGNNQGTIV 232 (408)
Q Consensus 153 ~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~l~ 232 (408)
..+++
T Consensus 80 ---------------------------------------------------------------------------q~~~r 84 (267)
T KOG4454|consen 80 ---------------------------------------------------------------------------QRTLR 84 (267)
T ss_pred ---------------------------------------------------------------------------hcccc
Confidence 13444
Q ss_pred EcC----CCCCCcHHHHHHHHhcCCCceeec----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 046223 233 VFN----LDSGVSSSTLKEIFQAFGPVKELR----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHV 295 (408)
Q Consensus 233 V~n----Lp~~~t~~~L~~~F~~~G~v~~v~----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l 295 (408)
.|+ |...++++.+.+.|+.-|.+..++ ..+.++.++|+.+....+.-.++....+....-+++
T Consensus 85 ~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~~ 155 (267)
T KOG4454|consen 85 CGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLELFQKKV 155 (267)
T ss_pred cCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCcCCCCc
Confidence 555 677889999999999999998883 346678899999988888888888777665444433
No 101
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.12 E-value=1.8e-10 Score=80.62 Aligned_cols=55 Identities=22% Similarity=0.436 Sum_probs=46.6
Q ss_pred HHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceeccc
Q 046223 99 VRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPY 157 (408)
Q Consensus 99 L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~~ 157 (408)
|+++|++||+|..|.+.++.+++|||+|.+.++|++|++.|||..+. |+. +++.|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~--g~~--l~V~~ 55 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFN--GRP--LKVSY 55 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEET--TEE--EEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEC--CcE--EEEEE
Confidence 78999999999999998755699999999999999999999999875 663 55443
No 102
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=1.1e-09 Score=105.69 Aligned_cols=161 Identities=18% Similarity=0.201 Sum_probs=104.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEE---EEEee----cCcc---EEEEEECCHHHHHHHHHHhcCccccccc
Q 046223 79 TGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRG---VQMER----LMEG---IVTVHFYDLRHAEMAFKEIREQHMQLQQ 148 (408)
Q Consensus 79 ~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~---v~~~~----~~kG---~afV~F~~~~~A~~Ai~~lng~~i~~~g 148 (408)
..-++.||||+||++++|++|...|..||.+.- .+... ..+| |+|+.|+++.+.+.-+.++.- ..+
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~----~~~ 331 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE----GEG 331 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh----ccc
Confidence 345788999999999999999999999997654 11111 2366 999999999998887766532 111
Q ss_pred cccceeccccCccccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCCCCCCCC
Q 046223 149 QSYGLKNPYSSGLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDGNNQ 228 (408)
Q Consensus 149 r~l~~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~ 228 (408)
+ +-+.+.-.. .+....++. |+-.. ...+.. +....-+..
T Consensus 332 ~-~yf~vss~~---------------~k~k~VQIr------------PW~la----------Ds~fv~---d~sq~lDpr 370 (520)
T KOG0129|consen 332 N-YYFKVSSPT---------------IKDKEVQIR------------PWVLA----------DSDFVL---DHNQPIDPR 370 (520)
T ss_pred c-eEEEEecCc---------------ccccceeEE------------eeEec----------cchhhh---ccCcccCcc
Confidence 1 111110000 000000000 00000 000000 011123446
Q ss_pred ceEEEcCCCCCCcHHHHHHHHh-cCCCceee----c-cCCCCccEEEEEECCHHHHHHHHHH
Q 046223 229 GTIVVFNLDSGVSSSTLKEIFQ-AFGPVKEL----R-ETPLKKHQRFIEFYDVRDAAKALKE 284 (408)
Q Consensus 229 ~~l~V~nLp~~~t~~~L~~~F~-~~G~v~~v----~-~~~~~~g~afV~F~~~~~A~~A~~~ 284 (408)
+|||||+||.-++-++|-.+|. -||.|..+ + ..+..+|-|=|+|.+..+-.+||.+
T Consensus 371 rTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 371 RTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 9999999999999999999999 79999888 1 4556789999999999999999874
No 103
>smart00361 RRM_1 RNA recognition motif.
Probab=99.08 E-value=3.9e-10 Score=82.76 Aligned_cols=56 Identities=27% Similarity=0.445 Sum_probs=49.5
Q ss_pred HHHHHHHHh----cCCCceeec------cC--CCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEE
Q 046223 242 SSTLKEIFQ----AFGPVKELR------ET--PLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVI 297 (408)
Q Consensus 242 ~~~L~~~F~----~~G~v~~v~------~~--~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v 297 (408)
+++|+++|+ +||.|.++. .+ +.++|||||+|.+.++|.+|++.|||+.+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999998762 22 678999999999999999999999999999999986
No 104
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.05 E-value=2.2e-10 Score=102.61 Aligned_cols=73 Identities=22% Similarity=0.408 Sum_probs=68.5
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCCC
Q 046223 229 GTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGG 304 (408)
Q Consensus 229 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 304 (408)
.+|||||||..+++.+|+.+|++||+|.+++ .-|.||||..++...|+.|+..|||.+|.|..|.|+-++.+.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECD---IvKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECD---IVKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeee---eecccceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 5799999999999999999999999999997 348899999999999999999999999999999999998773
No 105
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.04 E-value=1.8e-09 Score=100.11 Aligned_cols=184 Identities=15% Similarity=0.108 Sum_probs=115.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcc----CCeEEEEEee----cCccEEEEEECCHHHHHHHHHHhcCcccccccccccee
Q 046223 83 RTLVLSYVPGDVSETIVRRDLEVF----GEVRGVQMER----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLK 154 (408)
Q Consensus 83 rtlfV~nLp~~vte~~L~~~F~~~----G~V~~v~~~~----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~ 154 (408)
-.|-+++||+++|+.|+.++|..- |.++.|-+++ +..|-|||.|..+++|+.|+..-.+ .| |+ +..
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq-~i---Gq--RYI 235 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQ-NI---GQ--RYI 235 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHH-HH---hH--HHH
Confidence 346688999999999999999632 2445555554 4589999999999999999975332 11 22 011
Q ss_pred ccccCccccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCCCCCCCCceEEEc
Q 046223 155 NPYSSGLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDGNNQGTIVVF 234 (408)
Q Consensus 155 ~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~l~V~ 234 (408)
..|... ...+.+.+.. +... .++.+.........|. ...+......+|.++
T Consensus 236 ElFRST-------------------aaEvqqvlnr---~~s~------pLi~~~~sp~~p~~p~-~~~p~~~~kdcvRLR 286 (508)
T KOG1365|consen 236 ELFRST-------------------AAEVQQVLNR---EVSE------PLIPGLTSPLLPGGPA-RLVPPTRSKDCVRLR 286 (508)
T ss_pred HHHHHh-------------------HHHHHHHHHh---hccc------cccCCCCCCCCCCCcc-ccCCCCCCCCeeEec
Confidence 111110 0111111111 1100 1111110000000010 112223346899999
Q ss_pred CCCCCCcHHHHHHHHhcCCCceee-------ccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 046223 235 NLDSGVSSSTLKEIFQAFGPVKEL-------RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSR 301 (408)
Q Consensus 235 nLp~~~t~~~L~~~F~~~G~v~~v-------~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 301 (408)
+||+..+.|||.++|..|..-+.. ...|...|-|||+|.+.|+|..|....|++...+|-|+|--+.
T Consensus 287 GLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 287 GLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCS 360 (508)
T ss_pred CCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeecc
Confidence 999999999999999887532221 4567778999999999999999999999888888888887654
No 106
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.03 E-value=4.2e-10 Score=114.51 Aligned_cols=164 Identities=18% Similarity=0.250 Sum_probs=132.9
Q ss_pred CCCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeec----CccEEEEEECCHHHHHHHHHHhcCcccccccc
Q 046223 74 LPPPSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERL----MEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQ 149 (408)
Q Consensus 74 ~p~~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~----~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr 149 (408)
++--+...++|||+|||+..+++.+|+..|..+|.|.+|.|... ..-||||.|.+...+-.|...+.+..|.-..
T Consensus 364 ~~~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~- 442 (975)
T KOG0112|consen 364 LKLDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGT- 442 (975)
T ss_pred ccccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCc-
Confidence 34446678999999999999999999999999999999998762 3668999999999999999888876654111
Q ss_pred ccceeccccCccccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCCCCCCCCc
Q 046223 150 SYGLKNPYSSGLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDGNNQG 229 (408)
Q Consensus 150 ~l~~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~ 229 (408)
++.-|. . .......
T Consensus 443 ---~r~glG-------------------------------------------------~--------------~kst~tt 456 (975)
T KOG0112|consen 443 ---HRIGLG-------------------------------------------------Q--------------PKSTPTT 456 (975)
T ss_pred ---cccccc-------------------------------------------------c--------------cccccce
Confidence 111000 0 0112248
Q ss_pred eEEEcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCC--eEEEEEEecCCCC
Q 046223 230 TIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYG--KHVVIEFSRPGGH 305 (408)
Q Consensus 230 ~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g--~~l~v~~a~~~~~ 305 (408)
.+++++|...+....|...|..||.|..|. ..+..-||+|.|++...|+.|+..|.|..|+| +.++|.|+.+...
T Consensus 457 r~~sgglg~w~p~~~l~r~fd~fGpir~Id-y~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~~~ 533 (975)
T KOG0112|consen 457 RLQSGGLGPWSPVSRLNREFDRFGPIRIID-YRHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPPGA 533 (975)
T ss_pred eeccCCCCCCChHHHHHHHhhccCcceeee-cccCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccCCCC
Confidence 899999999999999999999999999885 33567799999999999999999999999986 7899999987553
No 107
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.03 E-value=2.3e-09 Score=94.52 Aligned_cols=160 Identities=16% Similarity=0.195 Sum_probs=113.1
Q ss_pred EEEEcCCCCCCCHHH-H--HHHhhccCCeEEEEEee----cCccEEEEEECCHHHHHHHHHHhcCccccccccccceecc
Q 046223 84 TLVLSYVPGDVSETI-V--RRDLEVFGEVRGVQMER----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNP 156 (408)
Q Consensus 84 tlfV~nLp~~vte~~-L--~~~F~~~G~V~~v~~~~----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~ 156 (408)
..+++++-.++..+- | ...|+.|-.+...++++ .-++++|+.|.....-.++-..-+++++. .+ .++
T Consensus 98 ~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~--~~--~VR-- 171 (290)
T KOG0226|consen 98 RPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIG--KP--PVR-- 171 (290)
T ss_pred cccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhcccccccccc--Cc--cee--
Confidence 346677666665554 3 67777777666655544 34899999998877777766655554432 00 011
Q ss_pred ccCccccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCCCCCCCCceEEEcCC
Q 046223 157 YSSGLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDGNNQGTIVVFNL 236 (408)
Q Consensus 157 ~s~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~l~V~nL 236 (408)
..+...|...++..|. .+..+||+|.|
T Consensus 172 ------------------------------------------------~a~gtswedPsl~ew~-----~~DfRIfcgdl 198 (290)
T KOG0226|consen 172 ------------------------------------------------LAAGTSWEDPSLAEWD-----EDDFRIFCGDL 198 (290)
T ss_pred ------------------------------------------------eccccccCCcccccCc-----cccceeecccc
Confidence 1122334444444433 33489999999
Q ss_pred CCCCcHHHHHHHHhcCCCceee-----ccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q 046223 237 DSGVSSSTLKEIFQAFGPVKEL-----RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRP 302 (408)
Q Consensus 237 p~~~t~~~L~~~F~~~G~v~~v-----~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 302 (408)
..+++++.|-..|.+|-..... ..+++++||+||.|.+..++..|+++|+|+.++.+.|++..+.-
T Consensus 199 gNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~w 269 (290)
T KOG0226|consen 199 GNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEW 269 (290)
T ss_pred cccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhH
Confidence 9999999999999998543222 45889999999999999999999999999999999998876543
No 108
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.01 E-value=5.5e-10 Score=108.98 Aligned_cols=73 Identities=19% Similarity=0.246 Sum_probs=66.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCccccccccccceeccc
Q 046223 83 RTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPY 157 (408)
Q Consensus 83 rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~~ 157 (408)
++|||||||++++|++|.++|+..|.|.+++++. +.+||||++|.+.++|+.|++.|||.++. || +|++.|
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~--gr--~l~v~~ 94 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFN--GR--KLRVNY 94 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccC--Cc--eEEeec
Confidence 8999999999999999999999999999999875 56999999999999999999999998876 67 677777
Q ss_pred cC
Q 046223 158 SS 159 (408)
Q Consensus 158 s~ 159 (408)
+.
T Consensus 95 ~~ 96 (435)
T KOG0108|consen 95 AS 96 (435)
T ss_pred cc
Confidence 65
No 109
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.00 E-value=5.5e-10 Score=88.93 Aligned_cols=70 Identities=16% Similarity=0.321 Sum_probs=61.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEe--ec---CccEEEEEECCHHHHHHHHHHhcCcccccc
Q 046223 78 STGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQME--RL---MEGIVTVHFYDLRHAEMAFKEIREQHMQLQ 147 (408)
Q Consensus 78 ~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~--~~---~kG~afV~F~~~~~A~~Ai~~lng~~i~~~ 147 (408)
..-..=-|||.++...+||++|.+.|..||+|+.+.+. ++ .||||+|+|++.++|++|+..|||..|.++
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q 142 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQ 142 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCC
Confidence 34455679999999999999999999999999997764 32 399999999999999999999999988744
No 110
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.89 E-value=2.5e-09 Score=107.31 Aligned_cols=67 Identities=21% Similarity=0.343 Sum_probs=61.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccc
Q 046223 81 PTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQS 150 (408)
Q Consensus 81 ~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~ 150 (408)
.+||||||+|+..++|.||.++|+.||+|.+|.++ .++|+|||.+....+|.+|+..|++..+. ++.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li-~~R~cAfI~M~~RqdA~kalqkl~n~kv~--~k~ 486 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI-PPRGCAFIKMVRRQDAEKALQKLSNVKVA--DKT 486 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeec-cCCceeEEEEeehhHHHHHHHHHhccccc--cee
Confidence 47999999999999999999999999999999888 48999999999999999999999987654 553
No 111
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.89 E-value=1.9e-09 Score=104.95 Aligned_cols=75 Identities=53% Similarity=0.822 Sum_probs=70.6
Q ss_pred CCCCCCCceEEEcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 046223 222 VPDGNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVV 296 (408)
Q Consensus 222 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~ 296 (408)
.+.+.+..+|+|-|||..|++++|.++|+.||+|+.|+.+...+|..||+|.|+.+|++|+++|++.++.|+.|+
T Consensus 69 ~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 69 SEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 344567899999999999999999999999999999998889999999999999999999999999999999988
No 112
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.88 E-value=3.9e-09 Score=105.96 Aligned_cols=79 Identities=22% Similarity=0.359 Sum_probs=73.6
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCCCCCC
Q 046223 228 QGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGGHSK 307 (408)
Q Consensus 228 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 307 (408)
++|||||.|+..+++.||.++|+.||+|.+|... ..+++|||+.....+|.+|+.+|+...+.++.|+|.|+..++.+.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li-~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ks 499 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI-PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPKS 499 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeec-cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcch
Confidence 6899999999999999999999999999999644 689999999999999999999999999999999999998777554
No 113
>smart00361 RRM_1 RNA recognition motif.
Probab=98.86 E-value=6.6e-09 Score=76.23 Aligned_cols=52 Identities=19% Similarity=0.308 Sum_probs=44.5
Q ss_pred HHHHHHHhh----ccCCeEEEE-Ee--e-----cCccEEEEEECCHHHHHHHHHHhcCcccccccc
Q 046223 96 ETIVRRDLE----VFGEVRGVQ-ME--R-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQ 149 (408)
Q Consensus 96 e~~L~~~F~----~~G~V~~v~-~~--~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr 149 (408)
+++|+++|+ +||.|.+|. +. + .++|||||+|.+.++|.+|++.|||..+. ||
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~--gr 65 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFD--GR 65 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC--CE
Confidence 678999998 999999984 32 2 35999999999999999999999998876 55
No 114
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.83 E-value=1e-08 Score=94.29 Aligned_cols=79 Identities=24% Similarity=0.415 Sum_probs=68.8
Q ss_pred CCCCCCceEEEcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHh-CCceeCCeEEEEEEec
Q 046223 223 PDGNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEM-NGQEIYGKHVVIEFSR 301 (408)
Q Consensus 223 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l-~g~~~~g~~l~v~~a~ 301 (408)
+.+....+|||++|...+++.||++.|.+||+|+.++.. ..+++|||+|.+.++|+.|.+.+ +...|+|++|+|.|.+
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~-~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRIL-PRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGR 301 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEee-cccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCC
Confidence 345567899999999999999999999999999999644 45779999999999999988766 4557899999999998
Q ss_pred C
Q 046223 302 P 302 (408)
Q Consensus 302 ~ 302 (408)
+
T Consensus 302 ~ 302 (377)
T KOG0153|consen 302 P 302 (377)
T ss_pred C
Confidence 8
No 115
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.83 E-value=4.7e-10 Score=113.79 Aligned_cols=142 Identities=15% Similarity=0.142 Sum_probs=120.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCccccccccccceec
Q 046223 81 PTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKN 155 (408)
Q Consensus 81 ~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~ 155 (408)
...++||+||+..+.+.+|...|..+|.+..|++.. +-+|+|||+|.+.++|.+||....+..+ |
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~---g------- 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF---G------- 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh---h-------
Confidence 345789999999999999999999999888766552 4499999999999999999974433221 0
Q ss_pred cccCccccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCCCCCCCCceEEEcC
Q 046223 156 PYSSGLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDGNNQGTIVVFN 235 (408)
Q Consensus 156 ~~s~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~l~V~n 235 (408)
...++|.|
T Consensus 736 ------------------------------------------------------------------------K~~v~i~g 743 (881)
T KOG0128|consen 736 ------------------------------------------------------------------------KISVAISG 743 (881)
T ss_pred ------------------------------------------------------------------------hhhhheeC
Confidence 26789999
Q ss_pred CCCCCcHHHHHHHHhcCCCceee----ccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCCC
Q 046223 236 LDSGVSSSTLKEIFQAFGPVKEL----RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGG 304 (408)
Q Consensus 236 Lp~~~t~~~L~~~F~~~G~v~~v----~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 304 (408)
+|+..|+++|+.+|.++|.+.++ ...++.+|.|+|.|.+..+|.+++...++..+..+.+.|..+.+..
T Consensus 744 ~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~~ 816 (881)
T KOG0128|consen 744 PPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNPER 816 (881)
T ss_pred CCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCCcc
Confidence 99999999999999999999888 3567889999999999999999999999888888888888876643
No 116
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.82 E-value=5e-08 Score=84.48 Aligned_cols=84 Identities=21% Similarity=0.285 Sum_probs=69.1
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCceee--ccCCCC----ccEEEEEECCHHHHHHHHHHhCCceeC---CeEEE
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKEL--RETPLK----KHQRFIEFYDVRDAAKALKEMNGQEIY---GKHVV 296 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v--~~~~~~----~g~afV~F~~~~~A~~A~~~l~g~~~~---g~~l~ 296 (408)
...+||||.+||.++...||..+|..|-..+.. +.+.+. +-+|||+|.+..+|.+|+++|||..|+ +..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 446999999999999999999999988544443 333333 479999999999999999999999987 78999
Q ss_pred EEEecCCCCCCCc
Q 046223 297 IEFSRPGGHSKKF 309 (408)
Q Consensus 297 v~~a~~~~~~~~~ 309 (408)
|++|+...+..+.
T Consensus 112 iElAKSNtK~kr~ 124 (284)
T KOG1457|consen 112 IELAKSNTKRKRR 124 (284)
T ss_pred eeehhcCcccccC
Confidence 9999987655443
No 117
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.80 E-value=1.6e-08 Score=93.07 Aligned_cols=84 Identities=23% Similarity=0.315 Sum_probs=69.1
Q ss_pred CCCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccce
Q 046223 74 LPPPSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGL 153 (408)
Q Consensus 74 ~p~~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~ 153 (408)
+-++.....++|||++|-..++|.+|++.|.+||+|++|.+.. .+++|||+|.+.++|+.|.+.+-+ .+..+|+ ++
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~-~~~CAFv~ftTR~aAE~Aae~~~n-~lvI~G~--Rl 295 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP-RKGCAFVTFTTREAAEKAAEKSFN-KLVINGF--RL 295 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeec-ccccceeeehhhHHHHHHHHhhcc-eeeecce--EE
Confidence 5556777889999999999999999999999999999998874 688999999999999999987766 3444565 35
Q ss_pred eccccCcc
Q 046223 154 KNPYSSGL 161 (408)
Q Consensus 154 ~~~~s~~~ 161 (408)
.+.|...+
T Consensus 296 ~i~Wg~~~ 303 (377)
T KOG0153|consen 296 KIKWGRPK 303 (377)
T ss_pred EEEeCCCc
Confidence 55566643
No 118
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=1.8e-08 Score=92.75 Aligned_cols=78 Identities=23% Similarity=0.359 Sum_probs=71.9
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhcCCCceee-----ccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 046223 227 NQGTIVVFNLDSGVSSSTLKEIFQAFGPVKEL-----RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSR 301 (408)
Q Consensus 227 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v-----~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 301 (408)
+.+.|||--|.+-++++||+-+|+.||.|..+ +.++.+-.||||+|++.+++++|.=.|++..|+.++|.|.|+.
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQ 317 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQ 317 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhh
Confidence 45899999999999999999999999999988 4678888999999999999999999999999999999999987
Q ss_pred CCC
Q 046223 302 PGG 304 (408)
Q Consensus 302 ~~~ 304 (408)
+-.
T Consensus 318 SVs 320 (479)
T KOG0415|consen 318 SVS 320 (479)
T ss_pred hhh
Confidence 543
No 119
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.70 E-value=2.4e-08 Score=93.25 Aligned_cols=171 Identities=18% Similarity=0.211 Sum_probs=123.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCcccccccccccee
Q 046223 80 GPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLK 154 (408)
Q Consensus 80 ~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~ 154 (408)
....++|++++..++.+.++..++..+|.+....+.. .++|++.|.|...+.+..|+.......+. ++. +.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~--~~~--~~ 161 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLD--GNK--GE 161 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccc--ccc--cc
Confidence 3577899999999999999999999999777755543 46999999999999999999754322222 110 11
Q ss_pred ccccCccccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCCCCCCCCceEE-E
Q 046223 155 NPYSSGLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDGNNQGTIV-V 233 (408)
Q Consensus 155 ~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~l~-V 233 (408)
..+.. ..+ + ...... ..-......++| |
T Consensus 162 ~dl~~--------------~~~-~--------------------------~~~n~~----------~~~~~~~s~~~~~~ 190 (285)
T KOG4210|consen 162 KDLNT--------------RRG-L--------------------------RPKNKL----------SRLSSGPSDTIFFV 190 (285)
T ss_pred Ccccc--------------ccc-c--------------------------cccchh----------cccccCccccceee
Confidence 11000 000 0 000000 000111234555 9
Q ss_pred cCCCCCCcHHHHHHHHhcCCCceee-----ccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCCCCC
Q 046223 234 FNLDSGVSSSTLKEIFQAFGPVKEL-----RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGGHS 306 (408)
Q Consensus 234 ~nLp~~~t~~~L~~~F~~~G~v~~v-----~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 306 (408)
+||++.+++++|+..|..+|.|..+ ..++..+|||+|.|.+...+..++.. ....++++.+.+.+.++....
T Consensus 191 ~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 191 GELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred cccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCCccc
Confidence 9999999999999999999999988 35777899999999999999999987 888999999999998776543
No 120
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.70 E-value=2.7e-08 Score=88.24 Aligned_cols=68 Identities=13% Similarity=0.194 Sum_probs=61.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEE--Eee---cCccEEEEEECCHHHHHHHHHHhcCcccc
Q 046223 78 STGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQ--MER---LMEGIVTVHFYDLRHAEMAFKEIREQHMQ 145 (408)
Q Consensus 78 ~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~--~~~---~~kG~afV~F~~~~~A~~Ai~~lng~~i~ 145 (408)
...+..+|||-.||.+..+.||..+|-.||.|.+.+ +.| .+|-|+||.|.+..+|+.||.+|||..|.
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIG 353 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIG 353 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhh
Confidence 566789999999999999999999999999999955 444 67999999999999999999999998875
No 121
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.66 E-value=7e-08 Score=82.93 Aligned_cols=79 Identities=22% Similarity=0.292 Sum_probs=71.0
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhcC-CCceee-----ccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEE
Q 046223 225 GNNQGTIVVFNLDSGVSSSTLKEIFQAF-GPVKEL-----RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIE 298 (408)
Q Consensus 225 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~-G~v~~v-----~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~ 298 (408)
......++|..++..+.+.++..+|.+| |.|..+ +.+|.++|||||+|++.+.|.-|-+.||+..+.|+.|.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3445789999999999999999999999 666666 4689999999999999999999999999999999999999
Q ss_pred EecCC
Q 046223 299 FSRPG 303 (408)
Q Consensus 299 ~a~~~ 303 (408)
+-.+.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 98776
No 122
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.61 E-value=9e-08 Score=82.26 Aligned_cols=72 Identities=17% Similarity=0.208 Sum_probs=61.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcc-CCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCcccccccccccee
Q 046223 81 PTRTLVLSYVPGDVSETIVRRDLEVF-GEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLK 154 (408)
Q Consensus 81 ~~rtlfV~nLp~~vte~~L~~~F~~~-G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~ 154 (408)
....+||..+|.-+.|.++..+|.+| |.|..+++.| .++|||||+|++.+.|+-|-+.||+..|. ++-|.+.
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~--e~lL~c~ 125 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLM--EHLLECH 125 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhh--hheeeeE
Confidence 34568999999999999999999998 6777788865 67999999999999999999999998876 5543333
No 123
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.60 E-value=4.1e-08 Score=86.48 Aligned_cols=72 Identities=25% Similarity=0.517 Sum_probs=66.7
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCC
Q 046223 229 GTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPG 303 (408)
Q Consensus 229 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 303 (408)
..+||++|++.+.+.+|+++|..||.|.++. ...||+||+|.+..+|..|+..||++.|+|.++.|++++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~---mk~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDAD---MKNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccce---eecccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 4689999999999999999999999998875 45789999999999999999999999999999999999854
No 124
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.56 E-value=1.4e-07 Score=91.87 Aligned_cols=76 Identities=20% Similarity=0.373 Sum_probs=67.7
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 046223 227 NQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSR 301 (408)
Q Consensus 227 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 301 (408)
-.++|||.+|...+.-.||+++|++||.|+..+ .+...+.|+||++.+.++|.+||+.||.++|.|+-|.|+.++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 357899999999999999999999999987662 233457899999999999999999999999999999999987
Q ss_pred C
Q 046223 302 P 302 (408)
Q Consensus 302 ~ 302 (408)
.
T Consensus 484 N 484 (940)
T KOG4661|consen 484 N 484 (940)
T ss_pred c
Confidence 4
No 125
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.55 E-value=3e-07 Score=82.91 Aligned_cols=79 Identities=29% Similarity=0.404 Sum_probs=71.4
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhcCCCceee----ccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCC
Q 046223 228 QGTIVVFNLDSGVSSSTLKEIFQAFGPVKEL----RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPG 303 (408)
Q Consensus 228 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v----~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 303 (408)
..+|+|.||++.|+++||+++|..||.++.+ ...+.+.|.|-|.|...++|.+|++.+||..++|+.+++....+.
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 4789999999999999999999999988877 467788899999999999999999999999999999999988765
Q ss_pred CCC
Q 046223 304 GHS 306 (408)
Q Consensus 304 ~~~ 306 (408)
...
T Consensus 163 ~~~ 165 (243)
T KOG0533|consen 163 SQS 165 (243)
T ss_pred ccc
Confidence 433
No 126
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=1.3e-07 Score=87.25 Aligned_cols=78 Identities=12% Similarity=0.182 Sum_probs=68.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCccccccccccce
Q 046223 79 TGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGL 153 (408)
Q Consensus 79 ~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~ 153 (408)
..+...|||..|.+-+|+++|.-+|+.||.|.++.+++ .+.-||||+|++.+++++|.=.|++..|. .| .|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLID--Dr--RI 311 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLID--DR--RI 311 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeec--cc--eE
Confidence 34567899999999999999999999999999999987 45779999999999999999999997766 55 47
Q ss_pred eccccCc
Q 046223 154 KNPYSSG 160 (408)
Q Consensus 154 ~~~~s~~ 160 (408)
.|.|+..
T Consensus 312 HVDFSQS 318 (479)
T KOG0415|consen 312 HVDFSQS 318 (479)
T ss_pred Eeehhhh
Confidence 8888763
No 127
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.51 E-value=2.1e-05 Score=76.06 Aligned_cols=71 Identities=15% Similarity=0.203 Sum_probs=56.5
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhcCCCc---eeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 046223 229 GTIVVFNLDSGVSSSTLKEIFQAFGPV---KELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFS 300 (408)
Q Consensus 229 ~~l~V~nLp~~~t~~~L~~~F~~~G~v---~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a 300 (408)
..++..+||+..++.++.++|+..-.+ ..+..+++..|-|+|+|.+.++|..|+. -++..+..+-|.+-.-
T Consensus 282 ~fv~MRGlpy~a~~~di~nfFspl~p~~v~i~ig~dGr~TGEAdveF~t~edav~Ams-kd~anm~hrYVElFln 355 (510)
T KOG4211|consen 282 HFVHMRGLPYDATENDIANFFSPLNPYRVHIEIGPDGRATGEADVEFATGEDAVGAMG-KDGANMGHRYVELFLN 355 (510)
T ss_pred ceeeecCCCccCCCcchhhhcCCCCceeEEEEeCCCCccCCcceeecccchhhHhhhc-cCCcccCcceeeeccc
Confidence 678889999999999999999865332 3335678889999999999999999976 5667777776665443
No 128
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.44 E-value=5.2e-08 Score=90.83 Aligned_cols=191 Identities=16% Similarity=0.194 Sum_probs=115.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee--------cCccEEEEEECCHHHHHHHHHHhcCcccccccccccee
Q 046223 83 RTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER--------LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLK 154 (408)
Q Consensus 83 rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~--------~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~ 154 (408)
..|-|.||.+.+|.++++.||...|+|..+.++. .....|||.|.|...+..|.. |.+..+. ++-| +.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfv--dral-iv 83 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFV--DRAL-IV 83 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceee--eeeE-EE
Confidence 4899999999999999999999999999988875 226789999999999999986 4454443 2322 22
Q ss_pred ccccCccccccCCCCCCCcccCCCChhHHHHHHhhhhccCCC-CCCCcCCCCCCCCc-------cccccCCcCCC----C
Q 046223 155 NPYSSGLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPV-LPPPARGLVAGRPV-------WAQFIVPTCNA----V 222 (408)
Q Consensus 155 ~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~-------~~~~~~p~~~~----~ 222 (408)
+.|... -+.++..-..+. ...+.+ ..++..-+....++ ......|.-.. .
T Consensus 84 ~p~~~~----------------~~p~r~af~~l~--~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~ 145 (479)
T KOG4676|consen 84 RPYGDE----------------VIPDRFAFVELA--DQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAK 145 (479)
T ss_pred EecCCC----------------CCccHHHHHhcC--cccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhh
Confidence 222210 011110000000 011111 11111111111111 00000111100 0
Q ss_pred CCCCCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec-cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 046223 223 PDGNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVV 296 (408)
Q Consensus 223 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~ 296 (408)
.-.....+++|++|...+...++.+.|..+|+|...+ ..+...-++.|+|....+...|+. ++|..+.-+...
T Consensus 146 kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k~qhsr 219 (479)
T KOG4676|consen 146 KLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERKRQHSR 219 (479)
T ss_pred hhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhhhhhhh
Confidence 0112247899999999999999999999999998773 344456678899999888888887 677665533333
No 129
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.39 E-value=2.4e-07 Score=86.91 Aligned_cols=78 Identities=18% Similarity=0.283 Sum_probs=67.9
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhcCCCceee-----ccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 046223 227 NQGTIVVFNLDSGVSSSTLKEIFQAFGPVKEL-----RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSR 301 (408)
Q Consensus 227 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v-----~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 301 (408)
..++|||++|+++++++.|++.|++||+|.++ ..+++++||+||+|++.+...+++. ..-..|+|+.|.+..|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 45899999999999999999999999999988 3568899999999999999888876 44567899999999887
Q ss_pred CCCC
Q 046223 302 PGGH 305 (408)
Q Consensus 302 ~~~~ 305 (408)
++..
T Consensus 84 ~r~~ 87 (311)
T KOG4205|consen 84 SRED 87 (311)
T ss_pred Cccc
Confidence 7653
No 130
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.38 E-value=4.8e-07 Score=88.17 Aligned_cols=69 Identities=13% Similarity=0.149 Sum_probs=61.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee--c---CccEEEEEECCHHHHHHHHHHhcCcccccccc
Q 046223 79 TGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER--L---MEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQ 149 (408)
Q Consensus 79 ~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~--~---~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr 149 (408)
...+|+|||.+|...+--.+|+++|++||+|+..+++. + .+-|+||++.+.++|.+||+.|+...|+ ||
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELH--Gr 475 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELH--GR 475 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhc--ce
Confidence 45678999999999999999999999999999988775 2 2779999999999999999999998877 66
No 131
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.34 E-value=1.3e-06 Score=78.75 Aligned_cols=75 Identities=20% Similarity=0.252 Sum_probs=62.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee----cCccEEEEEECCHHHHHHHHHHhcCcccccccccccee
Q 046223 79 TGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLK 154 (408)
Q Consensus 79 ~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~ 154 (408)
+.-...|+|.||++.|+++||+++|+.||.++.+-+.. .+.|.|-|.|...+||..|++.+|| +.++|+.+.+.
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~g--v~ldG~~mk~~ 157 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNG--VALDGRPMKIE 157 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcC--cccCCceeeeE
Confidence 33446799999999999999999999999888876654 5689999999999999999999999 55568865544
Q ss_pred c
Q 046223 155 N 155 (408)
Q Consensus 155 ~ 155 (408)
+
T Consensus 158 ~ 158 (243)
T KOG0533|consen 158 I 158 (243)
T ss_pred E
Confidence 4
No 132
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.34 E-value=1.2e-06 Score=85.36 Aligned_cols=77 Identities=30% Similarity=0.421 Sum_probs=65.1
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhcCCCceeec----c-CCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q 046223 228 QGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR----E-TPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRP 302 (408)
Q Consensus 228 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~----~-~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 302 (408)
..+|||+|||.+++.++|+++|..||.|+... . .++..+||||+|.+.++++.|+.+- -..++|++|.|+-.++
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEEeccc
Confidence 45699999999999999999999999998872 1 2334489999999999999999854 7789999999998776
Q ss_pred CCC
Q 046223 303 GGH 305 (408)
Q Consensus 303 ~~~ 305 (408)
...
T Consensus 367 ~~~ 369 (419)
T KOG0116|consen 367 GFR 369 (419)
T ss_pred ccc
Confidence 543
No 133
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.34 E-value=6.4e-07 Score=87.19 Aligned_cols=71 Identities=10% Similarity=0.167 Sum_probs=57.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCcccccccccccee
Q 046223 81 PTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLK 154 (408)
Q Consensus 81 ~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~ 154 (408)
...+|||+|||.++++++|+++|+.||.|+...|.. +...||||+|.+.++++.||++- .+.++++.+.+.
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As---p~~ig~~kl~Ve 362 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS---PLEIGGRKLNVE 362 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC---ccccCCeeEEEE
Confidence 345699999999999999999999999999976654 22389999999999999999864 555566644443
No 134
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.30 E-value=3e-06 Score=78.31 Aligned_cols=75 Identities=15% Similarity=0.214 Sum_probs=67.6
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhcCCCceee------------ccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeE
Q 046223 227 NQGTIVVFNLDSGVSSSTLKEIFQAFGPVKEL------------RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKH 294 (408)
Q Consensus 227 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v------------~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 294 (408)
.+..|||.|||.++|.+++.++|+++|.|..- ...|.-+|=|.|.|.-.++..-|++.|++..+.|++
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 35779999999999999999999999987654 245677899999999999999999999999999999
Q ss_pred EEEEEec
Q 046223 295 VVIEFSR 301 (408)
Q Consensus 295 l~v~~a~ 301 (408)
|+|+.|+
T Consensus 213 ~rVerAk 219 (382)
T KOG1548|consen 213 LRVERAK 219 (382)
T ss_pred EEEehhh
Confidence 9999986
No 135
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.30 E-value=1.2e-06 Score=87.67 Aligned_cols=79 Identities=20% Similarity=0.245 Sum_probs=66.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee--------cCccEEEEEECCHHHHHHHHHHhcCccccccccc
Q 046223 79 TGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER--------LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQS 150 (408)
Q Consensus 79 ~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~--------~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~ 150 (408)
...+++|||+||++.++|+.|-..|..||.|.+|+++. ..+.+|||-|-+..+|++|++.|+|..+. +.
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~--~~- 247 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVM--EY- 247 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeee--ee-
Confidence 44578899999999999999999999999999999885 34789999999999999999999998776 22
Q ss_pred cceeccccCcc
Q 046223 151 YGLKNPYSSGL 161 (408)
Q Consensus 151 l~~~~~~s~~~ 161 (408)
.++..|++..
T Consensus 248 -e~K~gWgk~V 257 (877)
T KOG0151|consen 248 -EMKLGWGKAV 257 (877)
T ss_pred -eeeecccccc
Confidence 4555565433
No 136
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.28 E-value=1e-07 Score=89.65 Aligned_cols=149 Identities=13% Similarity=0.178 Sum_probs=113.4
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccC--CeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceeccccCcc
Q 046223 84 TLVLSYVPGDVSETIVRRDLEVFG--EVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPYSSGL 161 (408)
Q Consensus 84 tlfV~nLp~~vte~~L~~~F~~~G--~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~~s~~~ 161 (408)
.+|++||.+.++..+|..+|...- --..+ ++ ..||+||.+.|...|.+|++.++|+. .++|+ .+.+.++..+
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~f-l~--k~gyafvd~pdq~wa~kaie~~sgk~-elqGk--r~e~~~sv~k 76 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQF-LV--KSGYAFVDCPDQQWANKAIETLSGKV-ELQGK--RQEVEHSVPK 76 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcce-ee--ecceeeccCCchhhhhhhHHhhchhh-hhcCc--eeeccchhhH
Confidence 589999999999999999998652 11112 22 37999999999999999999998863 44555 2333222100
Q ss_pred ccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCCCCCCCCceEEEcCCCCCCc
Q 046223 162 MLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDGNNQGTIVVFNLDSGVS 241 (408)
Q Consensus 162 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~l~V~nLp~~~t 241 (408)
...++.+-|.|++....
T Consensus 77 ---------------------------------------------------------------kqrsrk~Qirnippql~ 93 (584)
T KOG2193|consen 77 ---------------------------------------------------------------KQRSRKIQIRNIPPQLQ 93 (584)
T ss_pred ---------------------------------------------------------------HHHhhhhhHhcCCHHHH
Confidence 01125688999999999
Q ss_pred HHHHHHHHhcCCCceeeccCCCC--ccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 046223 242 SSTLKEIFQAFGPVKELRETPLK--KHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSR 301 (408)
Q Consensus 242 ~~~L~~~F~~~G~v~~v~~~~~~--~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 301 (408)
++.|..+...||.++.+...... .-..-|+|.+.+.++.|+..|+|..+....++|.|--
T Consensus 94 wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiP 155 (584)
T KOG2193|consen 94 WEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIP 155 (584)
T ss_pred HHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCc
Confidence 99999999999999988432222 2334588999999999999999999999999998863
No 137
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.28 E-value=1.4e-06 Score=87.25 Aligned_cols=78 Identities=24% Similarity=0.445 Sum_probs=69.4
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec--------cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 046223 225 GNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR--------ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVV 296 (408)
Q Consensus 225 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~--------~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~ 296 (408)
+....+|||+||+..++++.|...|..||.|..|+ .....+.+|||-|-+..+|++|++.|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 34568999999999999999999999999999882 2334577999999999999999999999999999999
Q ss_pred EEEecC
Q 046223 297 IEFSRP 302 (408)
Q Consensus 297 v~~a~~ 302 (408)
+.|++.
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 999864
No 138
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.23 E-value=4.7e-07 Score=78.37 Aligned_cols=74 Identities=24% Similarity=0.290 Sum_probs=65.6
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhcCCCceeec----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q 046223 228 QGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRP 302 (408)
Q Consensus 228 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 302 (408)
.++|||+|+-..++|+-|.++|-.-|.|.+|. ..++.+ ||||.|.++.+..-|++.|||..+.++.++|.+-..
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCG 86 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccccC
Confidence 48999999999999999999999999999882 233444 999999999999999999999999999999887543
No 139
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.22 E-value=2.5e-06 Score=77.10 Aligned_cols=78 Identities=21% Similarity=0.290 Sum_probs=69.8
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCceee-----ccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKEL-----RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFS 300 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v-----~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a 300 (408)
.+...+||+|+.+.+|.++++..|+.+|.|..+ +..+..+||+||+|.+.+.+++|+. |+|..|.|+.++|.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 446899999999999999999999999999644 4566789999999999999999999 9999999999999998
Q ss_pred cCCC
Q 046223 301 RPGG 304 (408)
Q Consensus 301 ~~~~ 304 (408)
+.+.
T Consensus 178 r~~~ 181 (231)
T KOG4209|consen 178 RTNV 181 (231)
T ss_pred eeec
Confidence 7653
No 140
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.18 E-value=1.9e-06 Score=76.39 Aligned_cols=71 Identities=15% Similarity=0.238 Sum_probs=62.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCccccccccccceec
Q 046223 83 RTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKN 155 (408)
Q Consensus 83 rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~ 155 (408)
-.||.|.|..+++++.|...|.+|-.....++++ +++||+||.|.+..++..|+++|+|+.+. .|.+++|.
T Consensus 191 fRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVg--srpiklRk 266 (290)
T KOG0226|consen 191 FRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVG--SRPIKLRK 266 (290)
T ss_pred ceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccc--cchhHhhh
Confidence 4699999999999999999999998766655554 67999999999999999999999999876 67777765
No 141
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.17 E-value=6.3e-06 Score=60.74 Aligned_cols=69 Identities=23% Similarity=0.424 Sum_probs=48.2
Q ss_pred ceEEEcCCCCCCcHHH----HHHHHhcCC-CceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q 046223 229 GTIVVFNLDSGVSSST----LKEIFQAFG-PVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRP 302 (408)
Q Consensus 229 ~~l~V~nLp~~~t~~~----L~~~F~~~G-~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 302 (408)
..|+|.|||.+.+... |+.++..+| .|..| ..+.|+|.|.+.+.|.+|.+.|+|..+.|++|.|.|...
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-----~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-----SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPK 76 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-----eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCC
Confidence 5699999999887654 566777775 56554 358899999999999999999999999999999999743
No 142
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.17 E-value=1.1e-05 Score=62.29 Aligned_cols=76 Identities=20% Similarity=0.284 Sum_probs=62.5
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhcC--CCceee-----ccCCCCccEEEEEECCHHHHHHHHHHhCCceeC----CeEEEE
Q 046223 229 GTIVVFNLDSGVSSSTLKEIFQAF--GPVKEL-----RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIY----GKHVVI 297 (408)
Q Consensus 229 ~~l~V~nLp~~~t~~~L~~~F~~~--G~v~~v-----~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~----g~~l~v 297 (408)
.||-|+|||...|.++|.+++... |....+ ..++-+.|||||.|.+.+.|.+-.+.++|+.+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999988653 433333 245567899999999999999999999999886 467788
Q ss_pred EEecCCC
Q 046223 298 EFSRPGG 304 (408)
Q Consensus 298 ~~a~~~~ 304 (408)
.||+-++
T Consensus 82 ~yAriQG 88 (97)
T PF04059_consen 82 SYARIQG 88 (97)
T ss_pred ehhHhhC
Confidence 8987665
No 143
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.10 E-value=0.0002 Score=72.03 Aligned_cols=188 Identities=15% Similarity=0.094 Sum_probs=111.6
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCccccccccccceecccc
Q 046223 84 TLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPYS 158 (408)
Q Consensus 84 tlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~~s 158 (408)
.+-+.+.+.+..+.|++++|...- |..+.+.. ...|-++|+|....++++|+..-+-..+ .|.+.+.-.-.
T Consensus 313 y~~~~gm~fn~~~nd~rkfF~g~~-~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~---~R~~q~~P~g~ 388 (944)
T KOG4307|consen 313 YNNYKGMEFNNDFNDGRKFFPGRN-AQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDV---NRPFQTGPPGN 388 (944)
T ss_pred eeeecccccccccchhhhhcCccc-ccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhh---hcceeecCCCc
Confidence 344678999999999999997532 33333222 3389999999999999999864222111 23222211100
Q ss_pred CccccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccc--cCCcCCCCCCCCCCceEEEcCC
Q 046223 159 SGLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQF--IVPTCNAVPDGNNQGTIVVFNL 236 (408)
Q Consensus 159 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~p~~~~~~~~~~~~~l~V~nL 236 (408)
..|..+ -.... . ..+...+...|++...-. ..+.....-......+|||..|
T Consensus 389 ~~~~~a----------~~~~~-------------~---~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~l 442 (944)
T KOG4307|consen 389 LGRNGA----------PPFQA-------------G---VPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQL 442 (944)
T ss_pred cccccC----------ccccc-------------c---CCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccC
Confidence 000000 00000 0 000000001111110000 0000001112334689999999
Q ss_pred CCCCcHHHHHHHHhcCCCcee-e----ccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 046223 237 DSGVSSSTLKEIFQAFGPVKE-L----RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSR 301 (408)
Q Consensus 237 p~~~t~~~L~~~F~~~G~v~~-v----~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 301 (408)
|..+++.++.++|...-.|++ | -.+++.++.|||.|.+++++.+|...-+...++.+.|+|.-..
T Consensus 443 P~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~ 512 (944)
T KOG4307|consen 443 PVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIA 512 (944)
T ss_pred CccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeechh
Confidence 999999999999998777776 4 2455677899999999999999988777778888999988654
No 144
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.07 E-value=2e-05 Score=60.96 Aligned_cols=63 Identities=14% Similarity=0.190 Sum_probs=52.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcc--CCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCcccc
Q 046223 83 RTLVLSYVPGDVSETIVRRDLEVF--GEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQ 145 (408)
Q Consensus 83 rtlfV~nLp~~vte~~L~~~F~~~--G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~ 145 (408)
+||.|+|||...|.++|.+++... |...-+.+.- .+.|||||.|.+.++|.+-.+.++|..+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~ 71 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWP 71 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccc
Confidence 589999999999999999988763 4444444432 45999999999999999999999998764
No 145
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.04 E-value=2.4e-05 Score=57.67 Aligned_cols=67 Identities=21% Similarity=0.277 Sum_probs=45.7
Q ss_pred CEEEEcCCCCCCCHHH----HHHHhhccC-CeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceeccc
Q 046223 83 RTLVLSYVPGDVSETI----VRRDLEVFG-EVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPY 157 (408)
Q Consensus 83 rtlfV~nLp~~vte~~----L~~~F~~~G-~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~~ 157 (408)
..|||.|||.+.+-.. |+.++..|| .|.+| ..+.|+|.|.+.+.|++|.+.|+|..+. |+ +|.+.|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-----~~~tAilrF~~~~~A~RA~KRmegEdVf--G~--kI~v~~ 73 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-----SGGTAILRFPNQEFAERAQKRMEGEDVF--GN--KISVSF 73 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT--SS--SS----EEES
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-----eCCEEEEEeCCHHHHHHHHHhhcccccc--cc--eEEEEE
Confidence 3689999999998776 566777887 45555 4799999999999999999999998887 44 355555
Q ss_pred c
Q 046223 158 S 158 (408)
Q Consensus 158 s 158 (408)
.
T Consensus 74 ~ 74 (90)
T PF11608_consen 74 S 74 (90)
T ss_dssp S
T ss_pred c
Confidence 4
No 146
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.94 E-value=0.00016 Score=67.90 Aligned_cols=155 Identities=19% Similarity=0.149 Sum_probs=95.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCe-----EEEEEeecCccEEEEEECCHHHHHHHHHHhcCcccccccccccee
Q 046223 80 GPTRTLVLSYVPGDVSETIVRRDLEVFGEV-----RGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLK 154 (408)
Q Consensus 80 ~~~rtlfV~nLp~~vte~~L~~~F~~~G~V-----~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~ 154 (408)
..+..|-.++||+..++.+|..+|+-.--. ......++..|.|.|.|.|.|.-+.|++.-. .+.++|- +.
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhk---hh~g~ry--ie 132 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHK---HHMGTRY--IE 132 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhh---hhccCCc--ee
Confidence 344455678999999999999999864322 2222233568899999999999988987432 2223441 11
Q ss_pred ccccCccccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCCCCCCCCceEEEc
Q 046223 155 NPYSSGLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDGNNQGTIVVF 234 (408)
Q Consensus 155 ~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~l~V~ 234 (408)
.|...- .+.++ ++ .|....... .....+.-.|.++
T Consensus 133 -vYka~g----------------------e~f~~----ia-----------gg~s~e~~~-------flsk~~qvivRmR 167 (508)
T KOG1365|consen 133 -VYKATG----------------------EEFLK----IA-----------GGTSNEAAP-------FLSKENQVIVRMR 167 (508)
T ss_pred -eeccCc----------------------hhheE----ec-----------CCccccCCC-------CCCcccceEEEec
Confidence 121100 00000 00 000000000 0111234678889
Q ss_pred CCCCCCcHHHHHHHHhcC----CC---ceee-ccCCCCccEEEEEECCHHHHHHHHHH
Q 046223 235 NLDSGVSSSTLKEIFQAF----GP---VKEL-RETPLKKHQRFIEFYDVRDAAKALKE 284 (408)
Q Consensus 235 nLp~~~t~~~L~~~F~~~----G~---v~~v-~~~~~~~g~afV~F~~~~~A~~A~~~ 284 (408)
+||+++++.|+.++|..- |. |..| +.+++..|-|||.|..+++|+.|+..
T Consensus 168 GLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 168 GLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred CCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH
Confidence 999999999999999632 12 3333 45788899999999999999999863
No 147
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.94 E-value=1.1e-05 Score=72.88 Aligned_cols=67 Identities=18% Similarity=0.209 Sum_probs=59.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCcccc
Q 046223 78 STGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQ 145 (408)
Q Consensus 78 ~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~ 145 (408)
...+.+.+||+|+.+.+|.+++...|+.||.|..|.+.. ..+|||||+|.+.+.+++|+. |+|..|.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~ 168 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIP 168 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccc
Confidence 455678999999999999999999999999998766654 459999999999999999998 9998887
No 148
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.87 E-value=2.3e-05 Score=62.05 Aligned_cols=70 Identities=26% Similarity=0.377 Sum_probs=44.9
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCc-----eeCCeEEEEEE
Q 046223 229 GTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQ-----EIYGKHVVIEF 299 (408)
Q Consensus 229 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~-----~~~g~~l~v~~ 299 (408)
..|+|.++...++.++|++.|+.||.|..|... .....|+|.|.+.++|++|+..+... .+.+..+.++.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~-~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFS-RGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE---TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEec-CCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 568899999999999999999999999999644 45678999999999999999887543 55565555554
No 149
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.80 E-value=6.8e-05 Score=59.31 Aligned_cols=59 Identities=24% Similarity=0.258 Sum_probs=40.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCc
Q 046223 83 RTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQ 142 (408)
Q Consensus 83 rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~ 142 (408)
..|.|.++...++-++|+++|+.||.|..|.+.+ ....|||.|.+.++|++|++.+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~-G~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR-GDTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--T-T-SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecC-CCCEEEEEECCcchHHHHHHHHHhc
Confidence 3588999999999999999999999999998874 5668999999999999999987654
No 150
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.58 E-value=8.2e-05 Score=69.55 Aligned_cols=80 Identities=19% Similarity=0.312 Sum_probs=71.0
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhcCCCceee-------------ccCCCCccEEEEEECCHHHHHHHHHHhCCceeC
Q 046223 225 GNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKEL-------------RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIY 291 (408)
Q Consensus 225 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v-------------~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~ 291 (408)
.....+|||.+|+..+++++|.++|.++|.|..= +.+...|+-|.|.|++...|+.|+..++++.+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 4557899999999999999999999999987543 356778999999999999999999999999999
Q ss_pred CeEEEEEEecCCC
Q 046223 292 GKHVVIEFSRPGG 304 (408)
Q Consensus 292 g~~l~v~~a~~~~ 304 (408)
|..|+|.+|..+.
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999999987554
No 151
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.56 E-value=0.0002 Score=49.06 Aligned_cols=53 Identities=21% Similarity=0.319 Sum_probs=44.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHH
Q 046223 82 TRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAF 136 (408)
Q Consensus 82 ~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai 136 (408)
++.|-|.+.+.+..+. +...|..||+|..+.+. ......+|+|.+..+|++|+
T Consensus 1 ~~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~-~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP-ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC-CCCcEEEEEECCHHHHHhhC
Confidence 3578899998777654 55589999999998886 46889999999999999985
No 152
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.54 E-value=0.00015 Score=66.92 Aligned_cols=74 Identities=18% Similarity=0.392 Sum_probs=59.7
Q ss_pred CceEEEcCCCCCCcHHHH------HHHHhcCCCceeeccCCC------Ccc-E-EEEEECCHHHHHHHHHHhCCceeCCe
Q 046223 228 QGTIVVFNLDSGVSSSTL------KEIFQAFGPVKELRETPL------KKH-Q-RFIEFYDVRDAAKALKEMNGQEIYGK 293 (408)
Q Consensus 228 ~~~l~V~nLp~~~t~~~L------~~~F~~~G~v~~v~~~~~------~~g-~-afV~F~~~~~A~~A~~~l~g~~~~g~ 293 (408)
..-+||-+|+..+..|++ .++|.+||.|..|....+ ..+ + .+|+|.+.|+|.+||.+.+|..++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 467899999998876662 589999999999821111 112 2 48999999999999999999999999
Q ss_pred EEEEEEec
Q 046223 294 HVVIEFSR 301 (408)
Q Consensus 294 ~l~v~~a~ 301 (408)
.|+..|..
T Consensus 194 ~lkatYGT 201 (480)
T COG5175 194 VLKATYGT 201 (480)
T ss_pred eEeeecCc
Confidence 99999865
No 153
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.43 E-value=0.00015 Score=69.04 Aligned_cols=64 Identities=17% Similarity=0.264 Sum_probs=56.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeec------------------CccEEEEEECCHHHHHHHHHHhc
Q 046223 79 TGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERL------------------MEGIVTVHFYDLRHAEMAFKEIR 140 (408)
Q Consensus 79 ~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~------------------~kG~afV~F~~~~~A~~Ai~~ln 140 (408)
+-++|+|.+.|||.+-.-+.|.++|..+|.|..|+|..- .+-+|+|+|+..+.|.+|.+.|+
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 348999999999999999999999999999999998751 25579999999999999999885
Q ss_pred Cc
Q 046223 141 EQ 142 (408)
Q Consensus 141 g~ 142 (408)
..
T Consensus 308 ~e 309 (484)
T KOG1855|consen 308 PE 309 (484)
T ss_pred hh
Confidence 53
No 154
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.24 E-value=0.00077 Score=67.95 Aligned_cols=71 Identities=17% Similarity=0.338 Sum_probs=61.6
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhcCCCcee-e----ccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEE
Q 046223 229 GTIVVFNLDSGVSSSTLKEIFQAFGPVKE-L----RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEF 299 (408)
Q Consensus 229 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~-v----~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 299 (408)
+.|-+.|+|++++-+||.++|..|-.+-. | ...+...|-|.|-|++.++|.+|...|+++.|..++|.+.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 37889999999999999999999954321 1 35677889999999999999999999999999999998865
No 155
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.15 E-value=0.0017 Score=50.65 Aligned_cols=72 Identities=22% Similarity=0.294 Sum_probs=52.4
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhcCCCceeec------------cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeE-
Q 046223 228 QGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR------------ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKH- 294 (408)
Q Consensus 228 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~------------~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~- 294 (408)
..-|.|-+.|.. ....|.+.|++||.|.+.. .......+..|+|++..+|.+||. .||..++|..
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 356888888877 4567889999999998773 233457789999999999999998 8999999864
Q ss_pred EEEEEec
Q 046223 295 VVIEFSR 301 (408)
Q Consensus 295 l~v~~a~ 301 (408)
+-|.+.+
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 4577664
No 156
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.13 E-value=0.00025 Score=63.39 Aligned_cols=60 Identities=20% Similarity=0.312 Sum_probs=48.3
Q ss_pred HHHHHHHh-cCCCceeec----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q 046223 243 STLKEIFQ-AFGPVKELR----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRP 302 (408)
Q Consensus 243 ~~L~~~F~-~~G~v~~v~----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 302 (408)
+||...|+ +||+|+++. ....-.|-++|.|..+++|++|+..||+.++.|++|..++.--
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 44555555 999999882 1122367899999999999999999999999999999998753
No 157
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.13 E-value=0.0011 Score=45.31 Aligned_cols=52 Identities=21% Similarity=0.346 Sum_probs=42.1
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHH
Q 046223 229 GTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKAL 282 (408)
Q Consensus 229 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~ 282 (408)
+.|-|.+.+.+.. +++...|..||+|..+... ....+.+|+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~-~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVP-ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcC-CCCcEEEEEECCHHHHHhhC
Confidence 5678888887665 4566688899999998644 56789999999999999985
No 158
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.12 E-value=0.0009 Score=61.89 Aligned_cols=75 Identities=12% Similarity=0.249 Sum_probs=59.2
Q ss_pred CEEEEcCCCCCCCHHH----H--HHHhhccCCeEEEEEeecC------ccE--EEEEECCHHHHHHHHHHhcCccccccc
Q 046223 83 RTLVLSYVPGDVSETI----V--RRDLEVFGEVRGVQMERLM------EGI--VTVHFYDLRHAEMAFKEIREQHMQLQQ 148 (408)
Q Consensus 83 rtlfV~nLp~~vte~~----L--~~~F~~~G~V~~v~~~~~~------kG~--afV~F~~~~~A~~Ai~~lng~~i~~~g 148 (408)
.-+||-+|++.+-.++ | .++|.+||.|..|.+.++. .+. .||+|.+.|||.+||.+.+|..++ |
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D--G 192 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD--G 192 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc--C
Confidence 4589999999988877 2 4799999999998887622 333 399999999999999999998876 7
Q ss_pred cccceeccccCcc
Q 046223 149 QSYGLKNPYSSGL 161 (408)
Q Consensus 149 r~l~~~~~~s~~~ 161 (408)
| .++..|...+
T Consensus 193 r--~lkatYGTTK 203 (480)
T COG5175 193 R--VLKATYGTTK 203 (480)
T ss_pred c--eEeeecCchH
Confidence 7 4566665543
No 159
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.07 E-value=0.00072 Score=64.57 Aligned_cols=64 Identities=30% Similarity=0.334 Sum_probs=53.5
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhcCCCceeeccCCC------------------CccEEEEEECCHHHHHHHHHHhC
Q 046223 225 GNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPL------------------KKHQRFIEFYDVRDAAKALKEMN 286 (408)
Q Consensus 225 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~------------------~~g~afV~F~~~~~A~~A~~~l~ 286 (408)
.-..++|.+.|||.+-.-+.|.++|+.+|.|+.|+.... .+-+|+|+|+..+.|.+|.+.|+
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 346799999999999989999999999999999942211 14579999999999999999886
Q ss_pred Cc
Q 046223 287 GQ 288 (408)
Q Consensus 287 g~ 288 (408)
..
T Consensus 308 ~e 309 (484)
T KOG1855|consen 308 PE 309 (484)
T ss_pred hh
Confidence 44
No 160
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.99 E-value=0.002 Score=63.56 Aligned_cols=73 Identities=14% Similarity=0.205 Sum_probs=57.3
Q ss_pred CCCCCCCEEEEcCCCCCCC--HH----HHHHHhhccCCeEEEEEee----cCccEEEEEECCHHHHHHHHHHhcCccccc
Q 046223 77 PSTGPTRTLVLSYVPGDVS--ET----IVRRDLEVFGEVRGVQMER----LMEGIVTVHFYDLRHAEMAFKEIREQHMQL 146 (408)
Q Consensus 77 ~~~~~~rtlfV~nLp~~vt--e~----~L~~~F~~~G~V~~v~~~~----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~ 146 (408)
..+.-...|+|.|+|.--. .+ -|..+|+++|+|..+.+.. ..+||.|++|.+..+|+.|++.|||+.|..
T Consensus 53 ~~eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldk 132 (698)
T KOG2314|consen 53 TAEGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDK 132 (698)
T ss_pred ccCCcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecc
Confidence 3445567899999985322 11 2668999999999988763 569999999999999999999999999875
Q ss_pred ccc
Q 046223 147 QQQ 149 (408)
Q Consensus 147 ~gr 149 (408)
+..
T Consensus 133 nHt 135 (698)
T KOG2314|consen 133 NHT 135 (698)
T ss_pred cce
Confidence 443
No 161
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.97 E-value=0.0016 Score=59.16 Aligned_cols=62 Identities=26% Similarity=0.316 Sum_probs=49.3
Q ss_pred HHHHHHHHhcCCCceeec---cCC---CCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCC
Q 046223 242 SSTLKEIFQAFGPVKELR---ETP---LKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPG 303 (408)
Q Consensus 242 ~~~L~~~F~~~G~v~~v~---~~~---~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 303 (408)
++++++.+.+||.|..|. ..+ ...---||+|...++|.+|+-.|||+.|+||.+...|....
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~e 367 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLE 367 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHH
Confidence 457889999999998772 111 11223799999999999999999999999999999887543
No 162
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.92 E-value=0.00058 Score=60.96 Aligned_cols=65 Identities=22% Similarity=0.185 Sum_probs=56.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeec-------------Cc----cEEEEEECCHHHHHHHHHHhcCcc
Q 046223 81 PTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERL-------------ME----GIVTVHFYDLRHAEMAFKEIREQH 143 (408)
Q Consensus 81 ~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~-------------~k----G~afV~F~~~~~A~~Ai~~lng~~ 143 (408)
-.-.||+++||+.+.-.-|+++|+.||+|-.|.+... ++ .-|+|+|.+...|..+.+.|||..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4567999999999999999999999999999998651 11 127899999999999999999998
Q ss_pred cc
Q 046223 144 MQ 145 (408)
Q Consensus 144 i~ 145 (408)
|.
T Consensus 153 Ig 154 (278)
T KOG3152|consen 153 IG 154 (278)
T ss_pred cC
Confidence 86
No 163
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.89 E-value=0.0022 Score=62.85 Aligned_cols=61 Identities=21% Similarity=0.263 Sum_probs=54.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhh-ccCCeEEEEEeec-----CccEEEEEECCHHHHHHHHHH
Q 046223 78 STGPTRTLVLSYVPGDVSETIVRRDLE-VFGEVRGVQMERL-----MEGIVTVHFYDLRHAEMAFKE 138 (408)
Q Consensus 78 ~~~~~rtlfV~nLp~~vte~~L~~~F~-~~G~V~~v~~~~~-----~kG~afV~F~~~~~A~~Ai~~ 138 (408)
.-.+.||||||+||.-++-++|..+|+ -||.|..|-|..+ .+|-|-|+|.+-.+-.+||++
T Consensus 366 ~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 366 PIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 345789999999999999999999999 6999999887753 499999999999999999984
No 164
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.86 E-value=0.0033 Score=62.12 Aligned_cols=74 Identities=23% Similarity=0.334 Sum_probs=58.9
Q ss_pred CCceEEEcCCCCCCc------HHHHHHHHhcCCCceee----ccCCCCccEEEEEECCHHHHHHHHHHhCCceeC-CeEE
Q 046223 227 NQGTIVVFNLDSGVS------SSTLKEIFQAFGPVKEL----RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIY-GKHV 295 (408)
Q Consensus 227 ~~~~l~V~nLp~~~t------~~~L~~~F~~~G~v~~v----~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~-g~~l 295 (408)
-...|+|-|+|---. ..-|..+|+++|+|..+ ...+..+||.|++|.+..+|+.|++.|||+.|+ .++.
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 347899999985321 23567889999998877 355678999999999999999999999999887 4566
Q ss_pred EEEEe
Q 046223 296 VIEFS 300 (408)
Q Consensus 296 ~v~~a 300 (408)
.|..-
T Consensus 137 ~v~~f 141 (698)
T KOG2314|consen 137 FVRLF 141 (698)
T ss_pred Eeehh
Confidence 66543
No 165
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.85 E-value=0.00073 Score=60.37 Aligned_cols=68 Identities=22% Similarity=0.365 Sum_probs=56.7
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----c--------CCCCcc----EEEEEECCHHHHHHHHHHhCCce
Q 046223 227 NQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----E--------TPLKKH----QRFIEFYDVRDAAKALKEMNGQE 289 (408)
Q Consensus 227 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~--------~~~~~g----~afV~F~~~~~A~~A~~~l~g~~ 289 (408)
....||+++||+.+...-|+++|+.||.|-.|. . .+.+.+ -|.|+|.+...|..+...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 347899999999999999999999999998881 0 111121 28899999999999999999999
Q ss_pred eCCeE
Q 046223 290 IYGKH 294 (408)
Q Consensus 290 ~~g~~ 294 (408)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99864
No 166
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.84 E-value=0.0016 Score=61.02 Aligned_cols=70 Identities=16% Similarity=0.127 Sum_probs=59.8
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEE--------EEEee-----cCccEEEEEECCHHHHHHHHHHhcCcc
Q 046223 77 PSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRG--------VQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQH 143 (408)
Q Consensus 77 ~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~--------v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~ 143 (408)
.......+|||-+|+..+++.+|.++|.++|.|.. |.+.+ +.||-|.|.|.|...|+.||..++++.
T Consensus 61 ~~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkd 140 (351)
T KOG1995|consen 61 ADKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKD 140 (351)
T ss_pred ccccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccc
Confidence 34556778999999999999999999999998765 33322 569999999999999999999999999
Q ss_pred ccc
Q 046223 144 MQL 146 (408)
Q Consensus 144 i~~ 146 (408)
+..
T Consensus 141 f~g 143 (351)
T KOG1995|consen 141 FCG 143 (351)
T ss_pred ccC
Confidence 873
No 167
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.68 E-value=0.00041 Score=71.56 Aligned_cols=161 Identities=16% Similarity=0.085 Sum_probs=103.7
Q ss_pred CCCEEEEcCCCCCCCHH-HHHHHhhccCCeEEEEEee----cC-ccEEEEEECCHHHHHHHHHHhcCcccccccccccee
Q 046223 81 PTRTLVLSYVPGDVSET-IVRRDLEVFGEVRGVQMER----LM-EGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLK 154 (408)
Q Consensus 81 ~~rtlfV~nLp~~vte~-~L~~~F~~~G~V~~v~~~~----~~-kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~ 154 (408)
..+...+.++-+...+. .++..|+.+|.|+.|++.. .+ ..++++.+....+++.|... .+..+. ++ ...
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~p-a~~~~a--~~--~~a 644 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVP-AGGALA--NR--SAA 644 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccc-cccccC--Cc--ccc
Confidence 34567778887776666 5788999999999999875 11 22677888877777777642 222221 11 000
Q ss_pred ccccCccccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCCCCCCCCceEEEc
Q 046223 155 NPYSSGLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDGNNQGTIVVF 234 (408)
Q Consensus 155 ~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~l~V~ 234 (408)
+..+. .+..... .+ ..........++||+
T Consensus 645 v~~ad-----------------------------------------------~~~~~~~---~k-vs~n~~R~~~~~fvs 673 (881)
T KOG0128|consen 645 VGLAD-----------------------------------------------AEEKEEN---FK-VSPNEIRDLIKIFVS 673 (881)
T ss_pred CCCCC-----------------------------------------------chhhhhc---cC-cCchHHHHHHHHHHh
Confidence 00000 0000000 00 000011234689999
Q ss_pred CCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEE
Q 046223 235 NLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVI 297 (408)
Q Consensus 235 nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v 297 (408)
||+..+.++||.+.|..+|.+..++ ..+.-+|+|+|.|...++|.+|+...++..++...+.|
T Consensus 674 nl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i 741 (881)
T KOG0128|consen 674 NLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAI 741 (881)
T ss_pred hcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhhhe
Confidence 9999999999999999999887772 45667899999999999999999977766655333333
No 168
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.67 E-value=0.006 Score=50.50 Aligned_cols=56 Identities=25% Similarity=0.456 Sum_probs=45.2
Q ss_pred HHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCC
Q 046223 244 TLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPG 303 (408)
Q Consensus 244 ~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 303 (408)
+|.+.|..||++.-+|..+ +.-+|+|.+-++|.+|+. |+|.+++|+.|+|+...+.
T Consensus 52 ~ll~~~~~~GevvLvRfv~---~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVG---DTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHCCS-ECEEEEET---TCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE----
T ss_pred HHHHHHHhCCceEEEEEeC---CeEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCcc
Confidence 6788899999988877553 467999999999999988 9999999999999987654
No 169
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.57 E-value=0.0017 Score=60.45 Aligned_cols=69 Identities=6% Similarity=0.035 Sum_probs=57.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccC--CeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCcccccccc
Q 046223 81 PTRTLVLSYVPGDVSETIVRRDLEVFG--EVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQ 149 (408)
Q Consensus 81 ~~rtlfV~nLp~~vte~~L~~~F~~~G--~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr 149 (408)
..-++|||||-|.+|++||.+.....| .+.++++.. .+||||+|...+..+.++.++.|-.+.|+++.-
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P 154 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSP 154 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCC
Confidence 345789999999999999999999888 344444432 679999999999999999999999988886654
No 170
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.50 E-value=0.0015 Score=61.31 Aligned_cols=64 Identities=14% Similarity=0.281 Sum_probs=54.9
Q ss_pred CCCEEE-EcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCcccc
Q 046223 81 PTRTLV-LSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQ 145 (408)
Q Consensus 81 ~~rtlf-V~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~ 145 (408)
...++| |++|+.++++++|+..|..+|.|..|++.. ..+|||||.|.+...+..|+.. +...+.
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~ 252 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIG 252 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCccc
Confidence 445566 999999999999999999999999998864 4599999999999999999976 555544
No 171
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.47 E-value=0.0023 Score=63.62 Aligned_cols=80 Identities=11% Similarity=0.123 Sum_probs=65.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhc-cCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceecc
Q 046223 78 STGPTRTLVLSYVPGDVSETIVRRDLEV-FGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNP 156 (408)
Q Consensus 78 ~~~~~rtlfV~nLp~~vte~~L~~~F~~-~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~ 156 (408)
....+..|+|.||=.-.|.-+|++++.+ .|.|.+.+|. +-|..|||.|.+.++|.+.+.+|||..+... .+-+|.+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmD-kIKShCyV~yss~eEA~atr~AlhnV~WP~s-NPK~L~ad 517 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMD-KIKSHCYVSYSSVEEAAATREALHNVQWPPS-NPKHLIAD 517 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHH-HhhcceeEecccHHHHHHHHHHHhccccCCC-CCceeEee
Confidence 6778899999999999999999999995 6777777665 3477899999999999999999999887643 23356666
Q ss_pred ccC
Q 046223 157 YSS 159 (408)
Q Consensus 157 ~s~ 159 (408)
|..
T Consensus 518 f~~ 520 (718)
T KOG2416|consen 518 FVR 520 (718)
T ss_pred ecc
Confidence 654
No 172
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.40 E-value=0.0058 Score=60.85 Aligned_cols=79 Identities=20% Similarity=0.300 Sum_probs=66.6
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHHhc-CCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCcee---CCeEEEEEE
Q 046223 224 DGNNQGTIVVFNLDSGVSSSTLKEIFQA-FGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEI---YGKHVVIEF 299 (408)
Q Consensus 224 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~-~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~---~g~~l~v~~ 299 (408)
....++.|+|.||-.-.|.-+|++++.+ .|.|++.+ ..+-+..|||.|.+.++|.+...+|||..| +++.|.+.|
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~W-mDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf 518 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFW-MDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADF 518 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHH-HHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeee
Confidence 3456789999999999999999999994 56677764 345678899999999999999999999876 478999999
Q ss_pred ecCC
Q 046223 300 SRPG 303 (408)
Q Consensus 300 a~~~ 303 (408)
....
T Consensus 519 ~~~d 522 (718)
T KOG2416|consen 519 VRAD 522 (718)
T ss_pred cchh
Confidence 8654
No 173
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.28 E-value=0.005 Score=57.36 Aligned_cols=70 Identities=16% Similarity=0.115 Sum_probs=58.1
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhcCCC-----ceee--ccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEE
Q 046223 228 QGTIVVFNLDSGVSSSTLKEIFQAFGP-----VKEL--RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVI 297 (408)
Q Consensus 228 ~~~l~V~nLp~~~t~~~L~~~F~~~G~-----v~~v--~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v 297 (408)
.-++|||||-+.+|++||.+.....|- ++.. +..+.+||||+|...+..+.++-++.|-.++|.|+.-.|
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 468999999999999999998876652 2222 578899999999999999999999999999999874333
No 174
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.12 E-value=0.01 Score=53.23 Aligned_cols=59 Identities=25% Similarity=0.442 Sum_probs=51.5
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhcCCCceee----ccCCCCccEEEEEECCHHHHHHHHHHhCC
Q 046223 229 GTIVVFNLDSGVSSSTLKEIFQAFGPVKEL----RETPLKKHQRFIEFYDVRDAAKALKEMNG 287 (408)
Q Consensus 229 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v----~~~~~~~g~afV~F~~~~~A~~A~~~l~g 287 (408)
..|+|.||..-++.+.|.+.|+.||.|... ...++..+-++|.|...-.|.+|+..++-
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhcc
Confidence 679999999999999999999999987644 45667778899999999999999998853
No 175
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.06 E-value=0.0031 Score=56.61 Aligned_cols=54 Identities=22% Similarity=0.329 Sum_probs=42.7
Q ss_pred HHHHHHhh-ccCCeEEEEEee----cCccEEEEEECCHHHHHHHHHHhcCccccccccccc
Q 046223 97 TIVRRDLE-VFGEVRGVQMER----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYG 152 (408)
Q Consensus 97 ~~L~~~F~-~~G~V~~v~~~~----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~ 152 (408)
++|...|+ +||+|+.+++.. .-.|-+||.|..+++|++|++.|||..+. |++|.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~--G~pi~ 141 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYN--GRPIH 141 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCcccc--CCcce
Confidence 34555555 899999987654 23889999999999999999999998876 66433
No 176
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.04 E-value=0.016 Score=45.17 Aligned_cols=63 Identities=11% Similarity=0.073 Sum_probs=46.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEE------------EeecCccEEEEEECCHHHHHHHHHHhcCcccc
Q 046223 81 PTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQ------------MERLMEGIVTVHFYDLRHAEMAFKEIREQHMQ 145 (408)
Q Consensus 81 ~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~------------~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~ 145 (408)
....|.|=+.|.. ....|.+.|++||+|.+.. -.........|+|.+..+|.+|+. .||..|.
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~ 79 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFS 79 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEET
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEc
Confidence 3456888888887 5567888999999998875 122457889999999999999996 7887765
No 177
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.00 E-value=0.0043 Score=59.25 Aligned_cols=77 Identities=25% Similarity=0.350 Sum_probs=61.2
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCc-eeCCeEEEEEEecCCCCC
Q 046223 229 GTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQ-EIYGKHVVIEFSRPGGHS 306 (408)
Q Consensus 229 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~-~~~g~~l~v~~a~~~~~~ 306 (408)
..+|++||...++..||+.+|... .+-.-...-...||+||.+.+...|.+|++.++|+ ++.|+++.|..+-++..+
T Consensus 2 nklyignL~p~~~psdl~svfg~a-k~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqr 79 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDA-KIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQR 79 (584)
T ss_pred CcccccccCCCCChHHHHHHhccc-cCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHHH
Confidence 468999999999999999999754 11111111135789999999999999999999997 788999999998776543
No 178
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.90 E-value=0.026 Score=46.82 Aligned_cols=69 Identities=19% Similarity=0.232 Sum_probs=48.9
Q ss_pred CCCEEEEcCCC-----CCCCHH----HHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCcccccccccc
Q 046223 81 PTRTLVLSYVP-----GDVSET----IVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSY 151 (408)
Q Consensus 81 ~~rtlfV~nLp-----~~vte~----~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l 151 (408)
+..||.|.=+. ...-.+ +|.+.|..||+|.-|++. .+.-+|+|.+-++|.+|+. ++|.++. |+.+
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv---~~~mwVTF~dg~sALaals-~dg~~v~--g~~l 99 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFV---GDTMWVTFRDGQSALAALS-LDGIQVN--GRTL 99 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEE---TTCEEEEESSCHHHHHHHH-GCCSEET--TEEE
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEe---CCeEEEEECccHHHHHHHc-cCCcEEC--CEEE
Confidence 34567766555 112233 577889999999888876 4689999999999999996 9998876 6655
Q ss_pred ceec
Q 046223 152 GLKN 155 (408)
Q Consensus 152 ~~~~ 155 (408)
+++.
T Consensus 100 ~i~L 103 (146)
T PF08952_consen 100 KIRL 103 (146)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5554
No 179
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.87 E-value=0.012 Score=61.39 Aligned_cols=79 Identities=15% Similarity=0.178 Sum_probs=68.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceeccc
Q 046223 78 STGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPY 157 (408)
Q Consensus 78 ~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~~ 157 (408)
....++.+||++|...+....|...|..||.|..|.+. ...-||+|.|++...|+.|++.|.|..|..-.+ .+++.|
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~-hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~--r~rvdl 527 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR-HGQPYAYIQYESPPAAQAATHDMRGAPLGGPPR--RLRVDL 527 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecc-cCCcceeeecccCccchhhHHHHhcCcCCCCCc--cccccc
Confidence 44567889999999999999999999999999998775 467899999999999999999999988875555 577777
Q ss_pred cC
Q 046223 158 SS 159 (408)
Q Consensus 158 s~ 159 (408)
+.
T Consensus 528 a~ 529 (975)
T KOG0112|consen 528 AS 529 (975)
T ss_pred cc
Confidence 65
No 180
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=95.62 E-value=0.022 Score=57.70 Aligned_cols=61 Identities=16% Similarity=0.119 Sum_probs=53.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCcccc
Q 046223 81 PTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQ 145 (408)
Q Consensus 81 ~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~ 145 (408)
+.-+|||+|+...+..+-++.+...+|-|.++.... |||++|....-+.+|+..++...+.
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~----fgf~~f~~~~~~~ra~r~~t~~~~~ 99 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK----FGFCEFLKHIGDLRASRLLTELNID 99 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh----hcccchhhHHHHHHHHHHhcccCCC
Confidence 456899999999999999999999999988876653 9999999999999999988776554
No 181
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.57 E-value=0.05 Score=40.43 Aligned_cols=55 Identities=11% Similarity=0.250 Sum_probs=42.4
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCC
Q 046223 229 GTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNG 287 (408)
Q Consensus 229 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g 287 (408)
...+|+ .|..+...||.++|+.||.|.--. ....-|||...+.+.|..|+..+..
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~VsW---i~dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVSW---INDTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEEE---ECTTEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEEE---EcCCcEEEEeecHHHHHHHHHHhcc
Confidence 566666 999999999999999999875444 3456799999999999999998863
No 182
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=95.54 E-value=0.031 Score=53.05 Aligned_cols=71 Identities=18% Similarity=0.404 Sum_probs=56.4
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhcCCCceeeccC--------CCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 046223 229 GTIVVFNLDSGVSSSTLKEIFQAFGPVKELRET--------PLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFS 300 (408)
Q Consensus 229 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~--------~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a 300 (408)
..|-|.||...+|.++++.+|...|.|.+++.. ......|||.|.|...+..|.. |.++.|-++.|.|-.+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 579999999999999999999999999998422 2234579999999999998866 6666666666555543
No 183
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.39 E-value=0.11 Score=38.59 Aligned_cols=54 Identities=11% Similarity=0.214 Sum_probs=41.7
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcC
Q 046223 84 TLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIRE 141 (408)
Q Consensus 84 tlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng 141 (408)
..+|+ .|..+...||.++|+.||.|.--.| +..-|||...+.+.|..|+..+.-
T Consensus 11 VFhlt-FPkeWK~~DI~qlFspfG~I~VsWi---~dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 11 VFHLT-FPKEWKTSDIYQLFSPFGQIYVSWI---NDTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp EEEEE---TT--HHHHHHHCCCCCCEEEEEE---CTTEEEEEECCCHHHHHHHHHHTT
T ss_pred EEEEe-CchHhhhhhHHHHhccCCcEEEEEE---cCCcEEEEeecHHHHHHHHHHhcc
Confidence 34555 9999999999999999998765544 467899999999999999988753
No 184
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.36 E-value=0.085 Score=43.25 Aligned_cols=75 Identities=19% Similarity=0.325 Sum_probs=55.3
Q ss_pred CCCCCceEEEcCCCCCC-cHHH---HHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEE
Q 046223 224 DGNNQGTIVVFNLDSGV-SSST---LKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEF 299 (408)
Q Consensus 224 ~~~~~~~l~V~nLp~~~-t~~~---L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 299 (408)
.+..-.+|.|.=|..++ ..+| +...++.||.|.+|... ++..|.|.|+|..+|-+|+.+++. ..-|..+.+.|
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c--GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC--GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSW 158 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec--CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeec
Confidence 34456888887665554 2344 44556789999998544 467899999999999999999987 34577778777
Q ss_pred ec
Q 046223 300 SR 301 (408)
Q Consensus 300 a~ 301 (408)
-.
T Consensus 159 qq 160 (166)
T PF15023_consen 159 QQ 160 (166)
T ss_pred cc
Confidence 53
No 185
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.25 E-value=0.038 Score=50.53 Aligned_cols=52 Identities=17% Similarity=0.174 Sum_probs=42.6
Q ss_pred HHHHHHHhhccCCeEEEEEee------cCccEEEEEECCHHHHHHHHHHhcCcccccccc
Q 046223 96 ETIVRRDLEVFGEVRGVQMER------LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQ 149 (408)
Q Consensus 96 e~~L~~~F~~~G~V~~v~~~~------~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr 149 (408)
|+++++.+++||.|..|.|.- ...--.||+|...++|.+|+-.|||..|. ||
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFG--Gr 357 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFG--GR 357 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceec--ce
Confidence 446888999999999987654 11334899999999999999999999876 66
No 186
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.00 E-value=0.084 Score=43.28 Aligned_cols=61 Identities=23% Similarity=0.336 Sum_probs=48.4
Q ss_pred CCCCCEEEEcCCCCCCCH-HH---HHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcC
Q 046223 79 TGPTRTLVLSYVPGDVSE-TI---VRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIRE 141 (408)
Q Consensus 79 ~~~~rtlfV~nLp~~vte-~~---L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng 141 (408)
+.+-.||.|+=|..++.. +| |...++.||+|.+|.+. .+--|.|.|.|..+|-+|+.+++.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c--GrqsavVvF~d~~SAC~Av~Af~s 147 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC--GRQSAVVVFKDITSACKAVSAFQS 147 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec--CCceEEEEehhhHHHHHHHHhhcC
Confidence 445668999877776643 23 55567789999999887 577899999999999999999875
No 187
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.92 E-value=0.11 Score=36.51 Aligned_cols=53 Identities=23% Similarity=0.400 Sum_probs=40.5
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhcC----CCceeeccCCCCccEEEEEECCHHHHHHHHHHh
Q 046223 229 GTIVVFNLDSGVSSSTLKEIFQAF----GPVKELRETPLKKHQRFIEFYDVRDAAKALKEM 285 (408)
Q Consensus 229 ~~l~V~nLp~~~t~~~L~~~F~~~----G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l 285 (408)
..|+|.|+. +++.+||+.+|..| +. ..|.. ....-|-|.|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~-~~IEW--IdDtScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGP-FRIEW--IDDTSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCC-ceEEE--ecCCcEEEEECCHHHHHHHHHcC
Confidence 679999996 58889999999999 42 23321 12334789999999999999865
No 188
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.46 E-value=0.15 Score=53.16 Aligned_cols=74 Identities=20% Similarity=0.293 Sum_probs=60.6
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCcee--CCeEEEEEEecCC
Q 046223 229 GTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEI--YGKHVVIEFSRPG 303 (408)
Q Consensus 229 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~--~g~~l~v~~a~~~ 303 (408)
.+..+.|..-..+..-|..+|+.||.|.+.+.. +.-..|.|+|.+.+.|..|+++|+|+++ .|-..+|.+|+.-
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtl-r~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTL-RDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheec-ccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 344455666677788899999999999998632 4566799999999999999999999975 4788999999864
No 189
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.42 E-value=0.079 Score=52.66 Aligned_cols=70 Identities=16% Similarity=0.254 Sum_probs=52.0
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhc--CCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCC--ceeCCeEEEEEE
Q 046223 228 QGTIVVFNLDSGVSSSTLKEIFQA--FGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNG--QEIYGKHVVIEF 299 (408)
Q Consensus 228 ~~~l~V~nLp~~~t~~~L~~~F~~--~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g--~~~~g~~l~v~~ 299 (408)
.+.|.|+-|+..+..|+++.+|+. +-.+.++.+. . ..--||+|++..||+.|.+.|.. ++|.|+.|..++
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa-~-N~nWyITfesd~DAQqAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFA-H-NDNWYITFESDTDAQQAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeee-e-cCceEEEeecchhHHHHHHHHHHHHHhhcCcchhhhh
Confidence 477888999999999999999975 4456665322 1 22259999999999999998863 466677665443
No 190
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.41 E-value=0.22 Score=35.05 Aligned_cols=53 Identities=15% Similarity=0.167 Sum_probs=41.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcc----CCeEEEEEeecCccEEEEEECCHHHHHHHHHHh
Q 046223 83 RTLVLSYVPGDVSETIVRRDLEVF----GEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEI 139 (408)
Q Consensus 83 rtlfV~nLp~~vte~~L~~~F~~~----G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~l 139 (408)
..|+|.++. +++.++|+.+|..| + ...|.-+ .-.-|=|.|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~-~~~IEWI--dDtScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEG-PFRIEWI--DDTSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCC-CceEEEe--cCCcEEEEECCHHHHHHHHHcC
Confidence 469999985 69999999999999 4 2333333 3445889999999999999764
No 191
>PF07145 PAM2: Ataxin-2 C-terminal region; InterPro: IPR009818 This entry represents a conserved region approximately 250 residues long located towards the C terminus of eukaryotic ataxin-2. Ataxin-2 is a protein of unknown function, within which expansion of a polyglutamine tract (due to expansion of unstable CAG repeats in the coding region of the SCA2 gene) causes spinocerebellar ataxia type 2 (SCA2), a late-onset neurodegenerative disorder []. The expanded polyglutamine repeat in ataxin-2 causes disruption of the normal morphology of the Golgi complex and increased incidence of cell death []. Ataxin-2 is predicted to consist of mostly non-globular domains [].; PDB: 3NTW_B 1JH4_B 3KTR_B 3KUJ_B 3KUT_D 3KUS_D 1JGN_B 2RQG_A 2RQH_A.
Probab=94.34 E-value=0.028 Score=28.88 Aligned_cols=14 Identities=43% Similarity=0.873 Sum_probs=10.8
Q ss_pred CCCCCCCCCCCCCC
Q 046223 11 GNLDPRAQEFRPTT 24 (408)
Q Consensus 11 ~~~~~~a~~~~p~~ 24 (408)
-.|||.|+||+|..
T Consensus 4 s~LNp~A~eFvP~~ 17 (18)
T PF07145_consen 4 SKLNPNAPEFVPSS 17 (18)
T ss_dssp SSSSTTSSSS-TTT
T ss_pred cccCCCCccccCCC
Confidence 46999999999963
No 192
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.98 E-value=0.15 Score=44.47 Aligned_cols=62 Identities=19% Similarity=0.360 Sum_probs=45.1
Q ss_pred cHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhC--CceeCCeEEEEEEecCC
Q 046223 241 SSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMN--GQEIYGKHVVIEFSRPG 303 (408)
Q Consensus 241 t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~--g~~~~g~~l~v~~a~~~ 303 (408)
..+.|+++|..|+.+..+... ++-+-..|.|.+.++|.+|...|+ +..+.|..++|.|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L-~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPL-KSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEE-TTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEc-CCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 458899999999988877433 334457999999999999999999 99999999999998543
No 193
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.75 E-value=0.67 Score=36.84 Aligned_cols=67 Identities=13% Similarity=0.132 Sum_probs=50.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEEeecC---ccEEEEEECCHHHHHHHHHHhcCcccc
Q 046223 79 TGPTRTLVLSYVPGDVSETIVRRDLEVFG-EVRGVQMERLM---EGIVTVHFYDLRHAEMAFKEIREQHMQ 145 (408)
Q Consensus 79 ~~~~rtlfV~nLp~~vte~~L~~~F~~~G-~V~~v~~~~~~---kG~afV~F~~~~~A~~Ai~~lng~~i~ 145 (408)
...+..+.+...|..++-++|..+.+.+- .|..+++++.. +=.++++|.+.++|.+-.+.+||+.+.
T Consensus 10 ~~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 10 ERRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CCCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 33455566666777777777877766654 46668888744 446999999999999999999998875
No 194
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=93.71 E-value=0.066 Score=48.20 Aligned_cols=62 Identities=16% Similarity=0.170 Sum_probs=52.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEE--e--ecCccEEEEEECCHHHHHHHHHHhcCccc
Q 046223 83 RTLVLSYVPGDVSETIVRRDLEVFGEVRGVQM--E--RLMEGIVTVHFYDLRHAEMAFKEIREQHM 144 (408)
Q Consensus 83 rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~--~--~~~kG~afV~F~~~~~A~~Ai~~lng~~i 144 (408)
..|||.||..-++.+.|...|+.||+|..-.+ . .+..+-++|.|...-.|.+|...++..-+
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~ 97 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGF 97 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCcc
Confidence 68999999999999999999999999888222 2 26678899999999999999998754333
No 195
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.62 E-value=0.11 Score=45.17 Aligned_cols=80 Identities=8% Similarity=0.022 Sum_probs=49.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhc-cCCe---EEEEEee-------cCccEEEEEECCHHHHHHHHHHhcCcccccc-
Q 046223 80 GPTRTLVLSYVPGDVSETIVRRDLEV-FGEV---RGVQMER-------LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQ- 147 (408)
Q Consensus 80 ~~~rtlfV~nLp~~vte~~L~~~F~~-~G~V---~~v~~~~-------~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~- 147 (408)
.....|.|++||+++||+++.+.+.. +++- ..+.-.. ..-.-|||.|.+.+++..-...++|..|...
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 34568999999999999999998887 7766 2333111 1145699999999999999999999776421
Q ss_pred ccccceeccccC
Q 046223 148 QQSYGLKNPYSS 159 (408)
Q Consensus 148 gr~l~~~~~~s~ 159 (408)
|......+.|+-
T Consensus 85 g~~~~~~VE~Ap 96 (176)
T PF03467_consen 85 GNEYPAVVEFAP 96 (176)
T ss_dssp S-EEEEEEEE-S
T ss_pred CCCcceeEEEcc
Confidence 222334445544
No 196
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.40 E-value=0.17 Score=50.42 Aligned_cols=71 Identities=15% Similarity=0.177 Sum_probs=57.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhc--cCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceec
Q 046223 83 RTLVLSYVPGDVSETIVRRDLEV--FGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKN 155 (408)
Q Consensus 83 rtlfV~nLp~~vte~~L~~~F~~--~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~ 155 (408)
+.|.++-||.++-+|+++.||+. |-++.++.+-. ..-=||+|++..||+.|.+.|....-.++||.|..|+
T Consensus 176 cIvilREIpettp~e~Vk~lf~~encPk~iscefa~--N~nWyITfesd~DAQqAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENCPKVISCEFAH--NDNWYITFESDTDAQQAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeee--cCceEEEeecchhHHHHHHHHHHHHHhhcCcchhhhh
Confidence 34678999999999999999986 77888887763 2235899999999999999887766666777666554
No 197
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=92.84 E-value=0.083 Score=51.54 Aligned_cols=76 Identities=13% Similarity=0.317 Sum_probs=61.0
Q ss_pred CCceEEEcCCCCCC-cHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCCC
Q 046223 227 NQGTIVVFNLDSGV-SSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGG 304 (408)
Q Consensus 227 ~~~~l~V~nLp~~~-t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 304 (408)
+.+.|-+.-.+... +-++|...|.+||+|..|. .+.+---|.|+|.+..+|-+|.. .++..|++|.|+|.|-.+..
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~q-v~~~~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQ-VDYSSLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCcccccc-ccCchhhheeeeeccccccchhc-cccceecCceeEEEEecCCc
Confidence 34556666666654 5689999999999999984 23445679999999999988865 89999999999999998755
No 198
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.72 E-value=0.23 Score=45.77 Aligned_cols=64 Identities=28% Similarity=0.354 Sum_probs=50.1
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 046223 229 GTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHV 295 (408)
Q Consensus 229 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l 295 (408)
.=|-|-+.+..- -.-|..+|++||+|.+.. ......+-+|.|.+..+|++||. .||+.|+|..+
T Consensus 198 ~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv-~~~ngNwMhirYssr~~A~KALs-kng~ii~g~vm 261 (350)
T KOG4285|consen 198 TWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHV-TPSNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVM 261 (350)
T ss_pred ceEEEeccCccc-hhHHHHHHHhhCeeeeee-cCCCCceEEEEecchhHHHHhhh-hcCeeeccceE
Confidence 445555777654 346788999999999874 44667789999999999999998 79999988653
No 199
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=92.59 E-value=0.03 Score=52.38 Aligned_cols=75 Identities=13% Similarity=0.314 Sum_probs=57.2
Q ss_pred ceEEEcCCCCCCcHHHH---HHHHhcCCCceeeccCCC------C--ccEEEEEECCHHHHHHHHHHhCCceeCCeEEEE
Q 046223 229 GTIVVFNLDSGVSSSTL---KEIFQAFGPVKELRETPL------K--KHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVI 297 (408)
Q Consensus 229 ~~l~V~nLp~~~t~~~L---~~~F~~~G~v~~v~~~~~------~--~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v 297 (408)
.-+||-+|+..+.++++ .+.|.+||.|..|..... . ..-++|+|...++|..||...+|..++|+.++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 56778888877655544 367899999998832211 1 123899999999999999999999999999888
Q ss_pred EEecCC
Q 046223 298 EFSRPG 303 (408)
Q Consensus 298 ~~a~~~ 303 (408)
.+...+
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 877644
No 200
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=92.41 E-value=0.21 Score=50.92 Aligned_cols=71 Identities=20% Similarity=0.200 Sum_probs=61.6
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFS 300 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a 300 (408)
....++||+|+...+..+-++.+...+|.|..... --|||..|.....+..|+..++-..++|..+.+...
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr----~~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKR----DKFGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhh----hhhcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 34589999999999999999999999999887632 229999999999999999999999999988877663
No 201
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=91.01 E-value=1.2 Score=31.77 Aligned_cols=55 Identities=16% Similarity=0.392 Sum_probs=43.6
Q ss_pred CCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEE
Q 046223 239 GVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVI 297 (408)
Q Consensus 239 ~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v 297 (408)
.++-++++..+.+|+- ..|.. ...| -||.|.+.++|+++....+|+.+.+.+|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~~--d~tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIRD--DRTG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEEe--cCCE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 5778999999999974 44431 2233 379999999999999999999998877654
No 202
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=90.99 E-value=0.12 Score=54.02 Aligned_cols=76 Identities=12% Similarity=0.147 Sum_probs=62.6
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceeccccCccc
Q 046223 84 TLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPYSSGLM 162 (408)
Q Consensus 84 tlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~~s~~~s 162 (408)
+.++.|.+-..+..-|..+|.+||.|.+.+..+ .-..|.|+|...+.|..|+++|+|+++..-|- +.+|.|++...
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr-~~N~alvs~~s~~sai~a~dAl~gkevs~~g~--Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLR-DLNMALVSFSSVESAILALDALQGKEVSVTGA--PSRVSFAKTLP 375 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecc-cccchhhhhHHHHHHHHhhhhhcCCcccccCC--ceeEEeccccc
Confidence 456677778888999999999999999998874 56789999999999999999999998875554 46666666443
No 203
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=90.91 E-value=0.25 Score=43.01 Aligned_cols=74 Identities=15% Similarity=0.228 Sum_probs=48.4
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhc-CCCc---eeec-------cCCCCccEEEEEECCHHHHHHHHHHhCCceeCC----
Q 046223 228 QGTIVVFNLDSGVSSSTLKEIFQA-FGPV---KELR-------ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYG---- 292 (408)
Q Consensus 228 ~~~l~V~nLp~~~t~~~L~~~F~~-~G~v---~~v~-------~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g---- 292 (408)
..+|.|++||+.+|++++.+.++. ++.. ..+. .....-.-|+|.|.+.+++..-...++|..|-+
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~ 86 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGN 86 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCC
Confidence 478999999999999999986665 5543 2221 111122359999999999999999999976642
Q ss_pred -eEEEEEEec
Q 046223 293 -KHVVIEFSR 301 (408)
Q Consensus 293 -~~l~v~~a~ 301 (408)
....|++|-
T Consensus 87 ~~~~~VE~Ap 96 (176)
T PF03467_consen 87 EYPAVVEFAP 96 (176)
T ss_dssp EEEEEEEE-S
T ss_pred CcceeEEEcc
Confidence 355677764
No 204
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=90.83 E-value=1 Score=46.94 Aligned_cols=16 Identities=0% Similarity=-0.060 Sum_probs=8.0
Q ss_pred CEEEEcCCCCCCCHHH
Q 046223 83 RTLVLSYVPGDVSETI 98 (408)
Q Consensus 83 rtlfV~nLp~~vte~~ 98 (408)
.+.||+-=....+.++
T Consensus 642 ~cFWvkv~Edk~en~d 657 (1102)
T KOG1924|consen 642 NCFWVKVNEDKLENDD 657 (1102)
T ss_pred cceeeecchhhccchH
Confidence 4556664444444444
No 205
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=90.82 E-value=0.94 Score=32.37 Aligned_cols=49 Identities=16% Similarity=0.239 Sum_probs=39.2
Q ss_pred CCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCcccc
Q 046223 93 DVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQ 145 (408)
Q Consensus 93 ~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~ 145 (408)
.++-++++..+..|+ -..|... ..| -||.|.+.++|+++....+|..+.
T Consensus 11 ~~~v~d~K~~Lr~y~-~~~I~~d--~tG-fYIvF~~~~Ea~rC~~~~~~~~~f 59 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WDRIRDD--RTG-FYIVFNDSKEAERCFRAEDGTLFF 59 (66)
T ss_pred CccHHHHHHHHhcCC-cceEEec--CCE-EEEEECChHHHHHHHHhcCCCEEE
Confidence 577889999999998 4444443 355 479999999999999999997764
No 206
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=90.09 E-value=0.58 Score=34.29 Aligned_cols=61 Identities=21% Similarity=0.276 Sum_probs=35.8
Q ss_pred CCcHHHHHHHHhcCCCceee--ccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 046223 239 GVSSSTLKEIFQAFGPVKEL--RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFS 300 (408)
Q Consensus 239 ~~t~~~L~~~F~~~G~v~~v--~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a 300 (408)
.++..+|..++...+.|..- -.......|+||+-. .+.|..+++.|++..+.|++|+|+.|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~~S~vev~-~~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDNFSFVEVP-EEVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS-EEEEE--TT-HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeeeEEEEEEC-HHHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 57888999999887666433 122234678899875 45789999999999999999999865
No 207
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=89.49 E-value=2.8 Score=33.36 Aligned_cols=64 Identities=17% Similarity=0.163 Sum_probs=44.6
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhcCCC-ceee---ccCCCCccEEEEEECCHHHHHHHHHHhCCceeCC
Q 046223 229 GTIVVFNLDSGVSSSTLKEIFQAFGP-VKEL---RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYG 292 (408)
Q Consensus 229 ~~l~V~nLp~~~t~~~L~~~F~~~G~-v~~v---~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 292 (408)
..+.+...+..++-++|..+.+.+-. |..+ +....++-.+.++|.+.++|..-.+.+||+.+..
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 44555556666777777766666543 3333 3333345569999999999999999999998763
No 208
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=89.07 E-value=7.4 Score=36.16 Aligned_cols=57 Identities=12% Similarity=0.155 Sum_probs=48.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecC------------ccEEEEEECCHHHHHH
Q 046223 78 STGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLM------------EGIVTVHFYDLRHAEM 134 (408)
Q Consensus 78 ~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~------------kG~afV~F~~~~~A~~ 134 (408)
++--+|.|...|+..+++--.+...|.+||.|++|+++... .--..+.|-+.+.+-.
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLd 79 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLD 79 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHH
Confidence 45568899999999999999999999999999999998632 3568899999887654
No 209
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=88.39 E-value=0.93 Score=39.63 Aligned_cols=60 Identities=8% Similarity=0.000 Sum_probs=42.3
Q ss_pred CHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhc--CccccccccccceeccccC
Q 046223 95 SETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIR--EQHMQLQQQSYGLKNPYSS 159 (408)
Q Consensus 95 te~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~ln--g~~i~~~gr~l~~~~~~s~ 159 (408)
..+.|+++|..|+.+..+... ++-+-..|.|.+.++|.+|...|+ +..+. |. .+++.|+.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L-~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~--g~--~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPL-KSFRRIRVVFESPESAQRARQLLHWDGTSFN--GK--RLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEE-TTTTEEEEE-SSTTHHHHHHHTST--TSEET--TE--E-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEc-CCCCEEEEEeCCHHHHHHHHHHhcccccccC--CC--ceEEEEcc
Confidence 357899999999999987766 466779999999999999999998 76665 43 36666654
No 210
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=87.78 E-value=0.83 Score=42.27 Aligned_cols=58 Identities=16% Similarity=0.119 Sum_probs=44.6
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCcccc
Q 046223 85 LVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQ 145 (408)
Q Consensus 85 lfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~ 145 (408)
|=|-++++.-. .-|..+|++||+|.+.... .+..+-+|.|.+.-+|++||. -||+.|.
T Consensus 200 VTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~-~ngNwMhirYssr~~A~KALs-kng~ii~ 257 (350)
T KOG4285|consen 200 VTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP-SNGNWMHIRYSSRTHAQKALS-KNGTIID 257 (350)
T ss_pred EEEeccCccch-hHHHHHHHhhCeeeeeecC-CCCceEEEEecchhHHHHhhh-hcCeeec
Confidence 44445555433 3467789999999997666 567899999999999999996 6777665
No 211
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.36 E-value=2.4 Score=42.82 Aligned_cols=79 Identities=14% Similarity=0.105 Sum_probs=62.3
Q ss_pred CCCCCCCEEEEcCCCCC-CCHHHHHHHhhcc----CCeEEEEEee---------------c-------------C-----
Q 046223 77 PSTGPTRTLVLSYVPGD-VSETIVRRDLEVF----GEVRGVQMER---------------L-------------M----- 118 (408)
Q Consensus 77 ~~~~~~rtlfV~nLp~~-vte~~L~~~F~~~----G~V~~v~~~~---------------~-------------~----- 118 (408)
.....++.|-|.|+.|+ +.-.+|.-+|..| |.|.+|.|.. . +
T Consensus 169 ~~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~e 248 (650)
T KOG2318|consen 169 VLGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDE 248 (650)
T ss_pred ccccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchh
Confidence 34667899999999997 7888899988886 5888888763 0 0
Q ss_pred -----------------c--cEEEEEECCHHHHHHHHHHhcCccccccccccceec
Q 046223 119 -----------------E--GIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKN 155 (408)
Q Consensus 119 -----------------k--G~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~ 155 (408)
. =||.|+|.+++.|.+..+.++|..+.-.+..+.||.
T Consensus 249 e~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 249 EEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 1 169999999999999999999998876665555553
No 212
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=87.19 E-value=0.78 Score=34.80 Aligned_cols=23 Identities=13% Similarity=0.317 Sum_probs=20.2
Q ss_pred CceEEEcCCCCCCcHHHHHHHHh
Q 046223 228 QGTIVVFNLDSGVSSSTLKEIFQ 250 (408)
Q Consensus 228 ~~~l~V~nLp~~~t~~~L~~~F~ 250 (408)
.++|.|.|||...++++|++..+
T Consensus 52 ~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 52 KRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CCEEEEeCCCCCCChhhheeeEE
Confidence 58999999999999999987654
No 213
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=85.28 E-value=0.62 Score=43.84 Aligned_cols=63 Identities=10% Similarity=0.146 Sum_probs=49.5
Q ss_pred CEEEEcCCCCCCCHHHHH---HHhhccCCeEEEEEeecC------c--cEEEEEECCHHHHHHHHHHhcCcccc
Q 046223 83 RTLVLSYVPGDVSETIVR---RDLEVFGEVRGVQMERLM------E--GIVTVHFYDLRHAEMAFKEIREQHMQ 145 (408)
Q Consensus 83 rtlfV~nLp~~vte~~L~---~~F~~~G~V~~v~~~~~~------k--G~afV~F~~~~~A~~Ai~~lng~~i~ 145 (408)
.-+||-+|+..+..+++- +.|.+||.|..|.+.+.. . --++|+|...++|..||...+|..+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~d 151 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDD 151 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhh
Confidence 457899998887665543 589999999998876521 1 12899999999999999999997665
No 214
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=81.97 E-value=3.9 Score=40.16 Aligned_cols=64 Identities=17% Similarity=0.254 Sum_probs=55.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEEeecC---ccEEEEEECCHHHHHHHHHHhcCcccc
Q 046223 82 TRTLVLSYVPGDVSETIVRRDLEVFG-EVRGVQMERLM---EGIVTVHFYDLRHAEMAFKEIREQHMQ 145 (408)
Q Consensus 82 ~rtlfV~nLp~~vte~~L~~~F~~~G-~V~~v~~~~~~---kG~afV~F~~~~~A~~Ai~~lng~~i~ 145 (408)
++.|+|-.+|..+|--||..|...+- .|..++++|+. +=.++|.|.+.++|..-.+.+||+.|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 88999999999999999999888754 57778888843 445899999999999999999999875
No 215
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.87 E-value=8.7 Score=39.00 Aligned_cols=76 Identities=21% Similarity=0.342 Sum_probs=58.8
Q ss_pred CCCCceEEEcCCCCC-CcHHHHHHHHhcC----CCceeec---------------cCCC---------------------
Q 046223 225 GNNQGTIVVFNLDSG-VSSSTLKEIFQAF----GPVKELR---------------ETPL--------------------- 263 (408)
Q Consensus 225 ~~~~~~l~V~nLp~~-~t~~~L~~~F~~~----G~v~~v~---------------~~~~--------------------- 263 (408)
....++|-|-||.++ +.-+||.-+|..| |.|.+|. ..|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 345689999999995 7889999999876 5787771 1222
Q ss_pred ----------------CccEEEEEECCHHHHHHHHHHhCCceeC--CeEEEEEEe
Q 046223 264 ----------------KKHQRFIEFYDVRDAAKALKEMNGQEIY--GKHVVIEFS 300 (408)
Q Consensus 264 ----------------~~g~afV~F~~~~~A~~A~~~l~g~~~~--g~~l~v~~a 300 (408)
.--||.|+|.+.+.|.+....++|.++. |..|.++|.
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 0127999999999999999999999987 456666664
No 216
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=79.21 E-value=3.4 Score=37.83 Aligned_cols=76 Identities=20% Similarity=0.409 Sum_probs=46.0
Q ss_pred CceEEEcCCCCC------------CcHHHHHHHHhcCCCceee----------ccCCCCc-----cE---------EEEE
Q 046223 228 QGTIVVFNLDSG------------VSSSTLKEIFQAFGPVKEL----------RETPLKK-----HQ---------RFIE 271 (408)
Q Consensus 228 ~~~l~V~nLp~~------------~t~~~L~~~F~~~G~v~~v----------~~~~~~~-----g~---------afV~ 271 (408)
..+|++.+||-. -+++.|...|..||.|..| ..+++.. || |||+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 356777777632 3577899999999999888 1233332 23 3455
Q ss_pred ECCHHHHHHHHHHhCCceeC----Ce----EEEEEEecCC
Q 046223 272 FYDVRDAAKALKEMNGQEIY----GK----HVVIEFSRPG 303 (408)
Q Consensus 272 F~~~~~A~~A~~~l~g~~~~----g~----~l~v~~a~~~ 303 (408)
|-....-..|+..|.|..+. |+ .++|.|.+++
T Consensus 229 fmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsr 268 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSR 268 (445)
T ss_pred HHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhh
Confidence 54445555666777665432 22 5666666543
No 217
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=77.76 E-value=7.9 Score=29.10 Aligned_cols=55 Identities=18% Similarity=0.154 Sum_probs=41.9
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-cC-CeEEEEEeecCcc--EEEEEECCHHHHHHHHHHh
Q 046223 85 LVLSYVPGDVSETIVRRDLEV-FG-EVRGVQMERLMEG--IVTVHFYDLRHAEMAFKEI 139 (408)
Q Consensus 85 lfV~nLp~~vte~~L~~~F~~-~G-~V~~v~~~~~~kG--~afV~F~~~~~A~~Ai~~l 139 (408)
-|+=-++.+++..++++.++. || .|.+|.......| -|||.+...++|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 444456789999999999998 67 6777877654444 4999999999988875543
No 218
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=76.45 E-value=9 Score=35.34 Aligned_cols=49 Identities=14% Similarity=0.064 Sum_probs=37.2
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHH
Q 046223 228 QGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVR 276 (408)
Q Consensus 228 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~ 276 (408)
..-|+++||+.++.-.||+..+.+-|-+---.......|-||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCcc
Confidence 4569999999999999999999988754322123345788999997743
No 219
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=75.94 E-value=1.2 Score=43.72 Aligned_cols=75 Identities=16% Similarity=0.136 Sum_probs=54.3
Q ss_pred CCCCCCEEEEcCCCCCC-CHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceecc
Q 046223 78 STGPTRTLVLSYVPGDV-SETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNP 156 (408)
Q Consensus 78 ~~~~~rtlfV~nLp~~v-te~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~ 156 (408)
...+.+.|-+.-.+... |-++|...|.+||+|..|.+... ---|.|+|.+..+|-+|.. ..+..|. +|.|++.++
T Consensus 368 ~~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-~~~a~vTF~t~aeag~a~~-s~~avln--nr~iKl~wh 443 (526)
T KOG2135|consen 368 AVVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-SLHAVVTFKTRAEAGEAYA-SHGAVLN--NRFIKLFWH 443 (526)
T ss_pred hhcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc-hhhheeeeeccccccchhc-cccceec--CceeEEEEe
Confidence 34445556666666665 45679999999999999988643 4569999999999977774 5666554 676666653
No 220
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=75.08 E-value=11 Score=27.87 Aligned_cols=54 Identities=19% Similarity=0.126 Sum_probs=40.9
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-cC-CeEEEEEeecCcc--EEEEEECCHHHHHHHHHH
Q 046223 85 LVLSYVPGDVSETIVRRDLEV-FG-EVRGVQMERLMEG--IVTVHFYDLRHAEMAFKE 138 (408)
Q Consensus 85 lfV~nLp~~vte~~L~~~F~~-~G-~V~~v~~~~~~kG--~afV~F~~~~~A~~Ai~~ 138 (408)
-|+=.++.+++..+++..++. || .|..|.......+ -|||.+...++|...-..
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHh
Confidence 455567889999999999998 66 6777776653334 499999998888876543
No 221
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=72.58 E-value=6 Score=34.06 Aligned_cols=75 Identities=17% Similarity=0.313 Sum_probs=53.4
Q ss_pred ceEEEcCCCCCC-----cHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCe-EEEEEEecC
Q 046223 229 GTIVVFNLDSGV-----SSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGK-HVVIEFSRP 302 (408)
Q Consensus 229 ~~l~V~nLp~~~-----t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~-~l~v~~a~~ 302 (408)
.++.+.++...+ .....+++|..|-+..-.... ++.+..-|.|.+.+.|..|...+++..|.|+ .++.-|+.+
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l-rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~ 89 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL-RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQP 89 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH-HhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccC
Confidence 345555665543 234556777777655444322 4566778999999999999999999999998 888888876
Q ss_pred CC
Q 046223 303 GG 304 (408)
Q Consensus 303 ~~ 304 (408)
..
T Consensus 90 ~~ 91 (193)
T KOG4019|consen 90 GH 91 (193)
T ss_pred CC
Confidence 53
No 222
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=72.57 E-value=1.7 Score=39.67 Aligned_cols=64 Identities=27% Similarity=0.453 Sum_probs=43.6
Q ss_pred CCEEEEcCCCCC------------CCHHHHHHHhhccCCeEEEEEee----------c-----CccEE---------EEE
Q 046223 82 TRTLVLSYVPGD------------VSETIVRRDLEVFGEVRGVQMER----------L-----MEGIV---------TVH 125 (408)
Q Consensus 82 ~rtlfV~nLp~~------------vte~~L~~~F~~~G~V~~v~~~~----------~-----~kG~a---------fV~ 125 (408)
..|||+.+||-. -+|+-|+..|+.||+|..|.|.. + -+||+ ||+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 357888888743 36778999999999999987652 1 14443 355
Q ss_pred ECCHHHHHHHHHHhcCcccc
Q 046223 126 FYDLRHAEMAFKEIREQHMQ 145 (408)
Q Consensus 126 F~~~~~A~~Ai~~lng~~i~ 145 (408)
|..-..-..|+.+|.|..+.
T Consensus 229 fmeykgfa~amdalr~~k~a 248 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKLA 248 (445)
T ss_pred HHHHHhHHHHHHHHhcchHH
Confidence 55555556677777776653
No 223
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=70.89 E-value=12 Score=36.81 Aligned_cols=65 Identities=18% Similarity=0.326 Sum_probs=51.6
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhcCC-Cceee---ccCCCCccEEEEEECCHHHHHHHHHHhCCceeCC
Q 046223 228 QGTIVVFNLDSGVSSSTLKEIFQAFG-PVKEL---RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYG 292 (408)
Q Consensus 228 ~~~l~V~nLp~~~t~~~L~~~F~~~G-~v~~v---~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 292 (408)
+..|+|-.+|..++-.||..|+..+- .|..+ +..-.++-.++|+|.+.++|..-.+.+||+.|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 68899999999999999999988653 33333 4222334458899999999999999999998763
No 224
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=70.74 E-value=5.3 Score=36.76 Aligned_cols=48 Identities=13% Similarity=0.090 Sum_probs=37.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-cCccEEEEEECCHHH
Q 046223 83 RTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-LMEGIVTVHFYDLRH 131 (408)
Q Consensus 83 rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-~~kG~afV~F~~~~~ 131 (408)
.-||++||+.++.-.||+..+.+-|-+-- .+.. -+.|-||+.|.+...
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm-~iswkg~~~k~flh~~~~~~ 379 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPM-SISWKGHFGKCFLHFGNRKG 379 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCce-eEeeecCCcceeEecCCccC
Confidence 45999999999999999999998874332 2322 468899999987543
No 225
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=60.82 E-value=28 Score=25.21 Aligned_cols=56 Identities=5% Similarity=0.094 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHhhccCCeE-----EEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccce
Q 046223 92 GDVSETIVRRDLEVFGEVR-----GVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGL 153 (408)
Q Consensus 92 ~~vte~~L~~~F~~~G~V~-----~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~ 153 (408)
..++..+|..++...+.|. .|.+. ..|+||+-.. +.|+.+++.|++..+. |+.+.+
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~---~~~S~vev~~-~~a~~v~~~l~~~~~~--gk~v~v 71 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF---DNFSFVEVPE-EVAEKVLEALNGKKIK--GKKVRV 71 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE----SS-EEEEE-T-T-HHHHHHHHTT--SS--S----E
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe---eeEEEEEECH-HHHHHHHHHhcCCCCC--CeeEEE
Confidence 4578888888888876544 45553 7789988764 4889999999998776 664443
No 226
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=54.44 E-value=26 Score=24.59 Aligned_cols=19 Identities=16% Similarity=0.307 Sum_probs=16.5
Q ss_pred HHHHHHhhccCCeEEEEEe
Q 046223 97 TIVRRDLEVFGEVRGVQME 115 (408)
Q Consensus 97 ~~L~~~F~~~G~V~~v~~~ 115 (408)
.+|+++|+..|+|.-+.+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5799999999999987765
No 227
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=51.80 E-value=8.6 Score=29.18 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=22.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHh
Q 046223 78 STGPTRTLVLSYVPGDVSETIVRRDL 103 (408)
Q Consensus 78 ~~~~~rtlfV~nLp~~vte~~L~~~F 103 (408)
..-..|+|.|.|||..++|++|++.+
T Consensus 48 ~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 48 SGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred EcccCCEEEEeCCCCCCChhhheeeE
Confidence 34568999999999999999999854
No 228
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=51.48 E-value=26 Score=29.16 Aligned_cols=54 Identities=15% Similarity=0.222 Sum_probs=35.1
Q ss_pred EEEEcCCC--CCCCHHHHHHHhhc-cCCeEEEEEeecCccEEEEEECCHHHHHHHHH
Q 046223 84 TLVLSYVP--GDVSETIVRRDLEV-FGEVRGVQMERLMEGIVTVHFYDLRHAEMAFK 137 (408)
Q Consensus 84 tlfV~nLp--~~vte~~L~~~F~~-~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~ 137 (408)
...||.+- ...+-..|.+.+.+ .+....+.+..-..++..+.|.+.+++.++++
T Consensus 17 ~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l~~~~fl~~F~~~~d~~~vl~ 73 (153)
T PF14111_consen 17 LCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDLGDNLFLFQFESEEDRQRVLK 73 (153)
T ss_pred eEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEeCCCeEEEEEEeccceeEEEe
Confidence 34555552 34566666665554 34333444444468999999999999999886
No 229
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.57 E-value=24 Score=34.27 Aligned_cols=56 Identities=13% Similarity=0.229 Sum_probs=45.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHH
Q 046223 82 TRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKE 138 (408)
Q Consensus 82 ~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~ 138 (408)
...|=|.++|.....+||..+|+.|++ ..++|.......||-.|.+...|..|+..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~-kgfdIkWvDdthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQN-KGFDIKWVDDTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhc-CCceeEEeecceeEEeecchHHHHHHhhc
Confidence 345779999999999999999999984 33444444577899999999999999964
No 230
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=46.25 E-value=21 Score=28.61 Aligned_cols=44 Identities=16% Similarity=0.138 Sum_probs=24.0
Q ss_pred CCHHHHHHHhhccCCeEEEEEee--cCccEEEEEECCHHH-HHHHHH
Q 046223 94 VSETIVRRDLEVFGEVRGVQMER--LMEGIVTVHFYDLRH-AEMAFK 137 (408)
Q Consensus 94 vte~~L~~~F~~~G~V~~v~~~~--~~kG~afV~F~~~~~-A~~Ai~ 137 (408)
++.++|.+.|..|..++-..+.. .+.|++.|+|...-. =..|++
T Consensus 29 ~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp --SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHHH
Confidence 35578999999999775432322 448999999986443 344543
No 231
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=45.76 E-value=12 Score=32.18 Aligned_cols=64 Identities=11% Similarity=0.059 Sum_probs=47.0
Q ss_pred CEEEEcCCCCCCCHH-----HHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCcccccc
Q 046223 83 RTLVLSYVPGDVSET-----IVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQ 147 (408)
Q Consensus 83 rtlfV~nLp~~vte~-----~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~ 147 (408)
.++++.+|...+-.+ ...++|.+|-+....++. ++.++.-|.|.+.+.|..|...+++..|.++
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l-rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~ 79 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL-RSFRRVRINFSNPEAAADARIKLHSTSFNGK 79 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH-HhhceeEEeccChhHHHHHHHHhhhcccCCC
Confidence 457788887664322 245677777766665555 4778888999999999999999999888743
No 232
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=45.05 E-value=61 Score=27.06 Aligned_cols=52 Identities=13% Similarity=0.089 Sum_probs=37.7
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-cC-CeEEEEEeecCcc--EEEEEECCHHHHHHHH
Q 046223 85 LVLSYVPGDVSETIVRRDLEV-FG-EVRGVQMERLMEG--IVTVHFYDLRHAEMAF 136 (408)
Q Consensus 85 lfV~nLp~~vte~~L~~~F~~-~G-~V~~v~~~~~~kG--~afV~F~~~~~A~~Ai 136 (408)
-|+=-++...+..+|++.++. || .|..|.......| -|||.+....+|....
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidva 139 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVA 139 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHHH
Confidence 444446779999999999998 66 5667776654455 4999998877765443
No 233
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=44.79 E-value=49 Score=24.88 Aligned_cols=55 Identities=16% Similarity=0.367 Sum_probs=37.4
Q ss_pred EEEcCCCCCCcHHHHHHHHhc-CC-Cceeecc--CCCCccEEEEEECCHHHHHHHHHHh
Q 046223 231 IVVFNLDSGVSSSTLKEIFQA-FG-PVKELRE--TPLKKHQRFIEFYDVRDAAKALKEM 285 (408)
Q Consensus 231 l~V~nLp~~~t~~~L~~~F~~-~G-~v~~v~~--~~~~~g~afV~F~~~~~A~~A~~~l 285 (408)
-|+--.+...+..+|++.++. || .|.+|+. ......-|||++....+|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 334446778999999998887 45 4566632 2233346999999999888775543
No 234
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=44.66 E-value=52 Score=24.26 Aligned_cols=55 Identities=13% Similarity=0.311 Sum_probs=37.4
Q ss_pred EEEcCCCCCCcHHHHHHHHhc-CC-CceeeccC--CCCccEEEEEECCHHHHHHHHHHh
Q 046223 231 IVVFNLDSGVSSSTLKEIFQA-FG-PVKELRET--PLKKHQRFIEFYDVRDAAKALKEM 285 (408)
Q Consensus 231 l~V~nLp~~~t~~~L~~~F~~-~G-~v~~v~~~--~~~~g~afV~F~~~~~A~~A~~~l 285 (408)
-|+-.++...+..+|++.++. || .|..|+.. .....-|||++...++|...-..+
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 445556788999999988887 44 45566322 223345999999988887765543
No 235
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=44.64 E-value=34 Score=25.60 Aligned_cols=34 Identities=15% Similarity=0.200 Sum_probs=24.8
Q ss_pred CeEEEEEeecCccEEEEEECCHHHHHHHHHHhcC
Q 046223 108 EVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIRE 141 (408)
Q Consensus 108 ~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng 141 (408)
.|.++.....-+||-|||=.+..++.+|++.+.+
T Consensus 33 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 33 NIYSIFAPDSLKGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp ---EEEE-TTSTSEEEEEESSHHHHHHHHTT-TT
T ss_pred ceEEEEEeCCCceEEEEEeCCHHHHHHHHhcccc
Confidence 4666665556799999999999999999987655
No 236
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.66 E-value=34 Score=33.28 Aligned_cols=56 Identities=14% Similarity=0.240 Sum_probs=43.5
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHH
Q 046223 228 QGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKE 284 (408)
Q Consensus 228 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~ 284 (408)
.+.|-|.+.|.....+||...|+.|+.- .++..-.....||-.|.+...|..||..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~k-gfdIkWvDdthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNK-GFDIKWVDDTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcC-CceeEEeecceeEEeecchHHHHHHhhc
Confidence 4789999999999899999999999741 1211112355799999999999999874
No 237
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=41.99 E-value=1e+02 Score=22.41 Aligned_cols=42 Identities=21% Similarity=0.164 Sum_probs=32.8
Q ss_pred HHHHHHhhccCCeEEEEEeecC--ccEEEEEECCHHHHHHHHHHhc
Q 046223 97 TIVRRDLEVFGEVRGVQMERLM--EGIVTVHFYDLRHAEMAFKEIR 140 (408)
Q Consensus 97 ~~L~~~F~~~G~V~~v~~~~~~--kG~afV~F~~~~~A~~Ai~~ln 140 (408)
++|.+.+.++| +....+.. + .++.|+-+.+.++++++.+.+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sG-sG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSG-SGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEET-TSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCC-CCCCCeEEEEECCHHHHHHHHHHHH
Confidence 35777888899 66666664 4 7788888889999999998774
No 238
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=40.84 E-value=20 Score=22.15 Aligned_cols=17 Identities=12% Similarity=0.151 Sum_probs=10.6
Q ss_pred CCCCHHHHHHHhhccCC
Q 046223 92 GDVSETIVRRDLEVFGE 108 (408)
Q Consensus 92 ~~vte~~L~~~F~~~G~ 108 (408)
.++++++|+++|.+.+.
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 46899999999988653
No 239
>PF14893 PNMA: PNMA
Probab=33.26 E-value=44 Score=32.15 Aligned_cols=52 Identities=25% Similarity=0.346 Sum_probs=34.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhc----cCCeEEEE-Eee--cCccEEEEEECCHHH
Q 046223 80 GPTRTLVLSYVPGDVSETIVRRDLEV----FGEVRGVQ-MER--LMEGIVTVHFYDLRH 131 (408)
Q Consensus 80 ~~~rtlfV~nLp~~vte~~L~~~F~~----~G~V~~v~-~~~--~~kG~afV~F~~~~~ 131 (408)
...|.|.|.+||.++++++|++.+.. .|...-+- +.+ ...--|+|+|...-+
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~~n 74 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAEDVN 74 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccccc
Confidence 35688999999999999998876654 45332211 111 335568888875443
No 240
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=33.21 E-value=75 Score=22.74 Aligned_cols=57 Identities=21% Similarity=0.324 Sum_probs=37.2
Q ss_pred HHHHHHHhcCC-Cceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q 046223 243 STLKEIFQAFG-PVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRP 302 (408)
Q Consensus 243 ~~L~~~F~~~G-~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 302 (408)
++|.+.|...| .|..+. .++..-..-||+.+...+... .++=+.+++..|+|+..+.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCC
Confidence 56778888777 455652 233334567888877666333 4556678999999887643
No 241
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=32.40 E-value=50 Score=31.49 Aligned_cols=34 Identities=15% Similarity=0.164 Sum_probs=25.6
Q ss_pred EEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCC
Q 046223 268 RFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPG 303 (408)
Q Consensus 268 afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 303 (408)
|||+|++..+|..|++.+.... ++.++++.|-+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP 34 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEP 34 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCc
Confidence 7999999999999999766553 355566666443
No 242
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=31.96 E-value=50 Score=28.53 Aligned_cols=53 Identities=21% Similarity=0.200 Sum_probs=38.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcc-CCeEEEEEee------cCccEEEEEECCHHHHHHHHHH
Q 046223 81 PTRTLVLSYVPGDVSETIVRRDLEVF-GEVRGVQMER------LMEGIVTVHFYDLRHAEMAFKE 138 (408)
Q Consensus 81 ~~rtlfV~nLp~~vte~~L~~~F~~~-G~V~~v~~~~------~~kG~afV~F~~~~~A~~Ai~~ 138 (408)
..|++|.. .|+++|.++..-- |.+..|.+.+ .-+|-.||+|.+.++|...++.
T Consensus 110 ~~r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 110 KERTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred HHhhhhcc-----CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 35677776 5666665544332 6888888765 2378899999999999987764
No 243
>PHA01732 proline-rich protein
Probab=31.82 E-value=1.2e+02 Score=22.83 Aligned_cols=8 Identities=0% Similarity=0.181 Sum_probs=3.3
Q ss_pred CeEEEEEe
Q 046223 108 EVRGVQME 115 (408)
Q Consensus 108 ~V~~v~~~ 115 (408)
.-.+++|.
T Consensus 63 gTasLrIp 70 (94)
T PHA01732 63 GTASLRIP 70 (94)
T ss_pred CcceeEee
Confidence 33444443
No 244
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=31.78 E-value=56 Score=26.19 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=21.7
Q ss_pred CcHHHHHHHHhcCCCceee--ccCCCCccEEEEEECCHHH
Q 046223 240 VSSSTLKEIFQAFGPVKEL--RETPLKKHQRFIEFYDVRD 277 (408)
Q Consensus 240 ~t~~~L~~~F~~~G~v~~v--~~~~~~~g~afV~F~~~~~ 277 (408)
.+.++|++.|+.|..++.. .......|+++|+|...-.
T Consensus 29 ~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWS 68 (116)
T ss_dssp --SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHH
T ss_pred cCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChH
Confidence 3557899999999876433 3333567899999977443
No 245
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=31.20 E-value=10 Score=38.35 Aligned_cols=67 Identities=10% Similarity=0.183 Sum_probs=52.2
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeE
Q 046223 228 QGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKH 294 (408)
Q Consensus 228 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 294 (408)
.++||+.|+..+++-++|..+|+.+-.+..+. .......++.|+|+-.-....|+.+||+..+....
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~ 302 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNF 302 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccc
Confidence 47899999999999999999999986666651 12233456899999888888889999887665443
No 246
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=31.01 E-value=12 Score=37.91 Aligned_cols=63 Identities=10% Similarity=0.024 Sum_probs=49.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCccc
Q 046223 82 TRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHM 144 (408)
Q Consensus 82 ~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i 144 (408)
..+|||.|++++++-.+|..+++.+-.+..+-+.. +-..+++|.|.---....|+.+||+..+
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl 298 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRL 298 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccc
Confidence 45789999999999999999999987666654432 3367789999877777777777777543
No 247
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=30.19 E-value=1.7e+02 Score=28.72 Aligned_cols=78 Identities=15% Similarity=0.216 Sum_probs=57.5
Q ss_pred CCCCCCCEEEEcCCCCC-CCHHHHHHHhhcc----CCeEEEEEee-----------------------------------
Q 046223 77 PSTGPTRTLVLSYVPGD-VSETIVRRDLEVF----GEVRGVQMER----------------------------------- 116 (408)
Q Consensus 77 ~~~~~~rtlfV~nLp~~-vte~~L~~~F~~~----G~V~~v~~~~----------------------------------- 116 (408)
....++..|-|-|+.|+ +...+|..+|+.| |.|..|.|..
T Consensus 141 e~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~ 220 (622)
T COG5638 141 EEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGD 220 (622)
T ss_pred CCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCC
Confidence 34667889999999987 6777888888875 5676666542
Q ss_pred ------c----------Ccc-------------------EEEEEECCHHHHHHHHHHhcCcccccccccccee
Q 046223 117 ------L----------MEG-------------------IVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLK 154 (408)
Q Consensus 117 ------~----------~kG-------------------~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~ 154 (408)
. .+| ||.|++.+.+.+......++|..+...+.-+.|+
T Consensus 221 dn~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLR 293 (622)
T COG5638 221 DNVFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLR 293 (622)
T ss_pred ccchhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeee
Confidence 0 012 6899999999999999999998876555444444
No 248
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=27.37 E-value=83 Score=22.64 Aligned_cols=27 Identities=30% Similarity=0.219 Sum_probs=21.9
Q ss_pred cEEEEEECCHHHHHHHHHHhCCceeCC
Q 046223 266 HQRFIEFYDVRDAAKALKEMNGQEIYG 292 (408)
Q Consensus 266 g~afV~F~~~~~A~~A~~~l~g~~~~g 292 (408)
.+.+|.|.+..+|.+|-+.|....+.+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~ 28 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPV 28 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcE
Confidence 467999999999999999887654433
No 249
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=26.32 E-value=87 Score=35.09 Aligned_cols=35 Identities=11% Similarity=0.135 Sum_probs=28.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEE
Q 046223 80 GPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQM 114 (408)
Q Consensus 80 ~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~ 114 (408)
...++++|--+-..+-.+.|+.+-+.++...++..
T Consensus 70 ~kak~~~v~t~ka~~PpeHLrki~~~~sdm~s~~~ 104 (2365)
T COG5178 70 NKAKTLHVLTLKAPIPPEHLRKIQSPCSDMPSVLT 104 (2365)
T ss_pred hhhhheeeeccCCCCCHHHHHhhhCccccchhhhh
Confidence 34578899999999999999999999997666543
No 250
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=25.84 E-value=26 Score=25.08 Aligned_cols=39 Identities=10% Similarity=-0.026 Sum_probs=27.7
Q ss_pred HHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhc
Q 046223 97 TIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIR 140 (408)
Q Consensus 97 ~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~ln 140 (408)
++|.+.|..++....+. +=.+|..|.+.++|-.++.++.
T Consensus 27 ~~v~~~~~~~~~f~k~v-----kL~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIV-----KLKAFSPFKSAEEALENANAIS 65 (67)
T ss_pred HHHHHHHcCHHHHhhhh-----hhhhccCCCCHHHHHHHHHHhh
Confidence 57888887766544421 2338999999999988887654
No 251
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=25.82 E-value=57 Score=29.48 Aligned_cols=36 Identities=22% Similarity=0.281 Sum_probs=30.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEE
Q 046223 78 STGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQ 113 (408)
Q Consensus 78 ~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~ 113 (408)
.....++||+-|||...|++.|.++.+.+|-+..+.
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 345678999999999999999999999999665543
No 252
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=25.60 E-value=59 Score=36.32 Aligned_cols=8 Identities=0% Similarity=0.248 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 046223 242 SSTLKEIF 249 (408)
Q Consensus 242 ~~~L~~~F 249 (408)
++.+++.|
T Consensus 223 de~v~dw~ 230 (2365)
T COG5178 223 DEHVRDWV 230 (2365)
T ss_pred cHHHHHHH
Confidence 33344443
No 253
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=25.06 E-value=2.5e+02 Score=27.62 Aligned_cols=34 Identities=15% Similarity=0.236 Sum_probs=27.0
Q ss_pred EEEEEECCHHHHHHHHHHhCCceeCC--eEEEEEEe
Q 046223 267 QRFIEFYDVRDAAKALKEMNGQEIYG--KHVVIEFS 300 (408)
Q Consensus 267 ~afV~F~~~~~A~~A~~~l~g~~~~g--~~l~v~~a 300 (408)
||.|++.+.+.+.......+|.++.. ..+.+.|.
T Consensus 260 yAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfv 295 (622)
T COG5638 260 YAVVECEDIETSKNIYSACDGVEYENSANVLDLRFV 295 (622)
T ss_pred EEEEEeccchhhHHHHhccCccccccccceeeeeec
Confidence 68999999999999999999988764 45555554
No 254
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=24.64 E-value=1.8e+02 Score=24.42 Aligned_cols=33 Identities=18% Similarity=0.167 Sum_probs=26.7
Q ss_pred eEEEEEeecCccEEEEEECCHHHHHHHHHHhcC
Q 046223 109 VRGVQMERLMEGIVTVHFYDLRHAEMAFKEIRE 141 (408)
Q Consensus 109 V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng 141 (408)
|.+|.+...-.||.||+....+++..+++.+.+
T Consensus 36 i~~i~vp~~fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 36 IYAILAPPELKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred EEEEEccCCCCcEEEEEEEChHHHHHHHhcCCC
Confidence 667776666799999999988888888876654
No 255
>PF14893 PNMA: PNMA
Probab=24.32 E-value=69 Score=30.85 Aligned_cols=73 Identities=16% Similarity=0.283 Sum_probs=44.9
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHh----cCCCceee---ccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEE
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQ----AFGPVKEL---RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIE 298 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~----~~G~v~~v---~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~ 298 (408)
+..+.|.|.+||.++++++|++.+. ..|...-+ .....+..-|+|+|...-+-...=..+-| .|...+|-
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~~n~~~iP~~i~g---~gg~W~Vv 92 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAEDVNYSLIPREIPG---KGGPWRVV 92 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccccchhhCchhcCC---CCCceEEE
Confidence 3458899999999999999988764 34443222 11223355688998765554333333333 35666766
Q ss_pred Eec
Q 046223 299 FSR 301 (408)
Q Consensus 299 ~a~ 301 (408)
+-.
T Consensus 93 ~~p 95 (331)
T PF14893_consen 93 FKP 95 (331)
T ss_pred ecC
Confidence 644
No 256
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=23.77 E-value=2.4e+02 Score=19.02 Aligned_cols=54 Identities=17% Similarity=0.151 Sum_probs=39.6
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCH----HHHHHHHHH
Q 046223 84 TLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDL----RHAEMAFKE 138 (408)
Q Consensus 84 tlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~----~~A~~Ai~~ 138 (408)
|+.|.|+.=.--...+++.+...-.|.++.+.. ..+.+-|.|... ++..++|+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~-~~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDL-ETKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEET-TTTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEEC-CCCEEEEEEecCCCCHHHHHHHHHH
Confidence 567777766667788999999988899988874 468889999755 444445543
No 257
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=23.66 E-value=3.3e+02 Score=20.59 Aligned_cols=45 Identities=24% Similarity=0.197 Sum_probs=32.2
Q ss_pred HHHHHHHhhccC-CeEEEEEee-cCccEEEEEECCHHHHHHHHHHhc
Q 046223 96 ETIVRRDLEVFG-EVRGVQMER-LMEGIVTVHFYDLRHAEMAFKEIR 140 (408)
Q Consensus 96 e~~L~~~F~~~G-~V~~v~~~~-~~kG~afV~F~~~~~A~~Ai~~ln 140 (408)
.+.++++++++| +++++.... ..-....+++.|.+.|.++.-.+.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHH
Confidence 345778888876 677777654 445668899999998887765443
No 258
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=23.65 E-value=1.9e+02 Score=22.03 Aligned_cols=33 Identities=21% Similarity=0.296 Sum_probs=24.4
Q ss_pred EEEEcCCCCCCCHHHHHHHhhc-cC-CeEEEEEee
Q 046223 84 TLVLSYVPGDVSETIVRRDLEV-FG-EVRGVQMER 116 (408)
Q Consensus 84 tlfV~nLp~~vte~~L~~~F~~-~G-~V~~v~~~~ 116 (408)
..|+=.++.++|..|+++.|+. || .|..|....
T Consensus 21 n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~ 55 (92)
T PRK05738 21 NKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLN 55 (92)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEE
Confidence 3455556789999999999998 77 566666543
No 259
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=23.46 E-value=1.5e+02 Score=22.35 Aligned_cols=45 Identities=18% Similarity=0.137 Sum_probs=30.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEe--ecCccEEEEEE
Q 046223 82 TRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQME--RLMEGIVTVHF 126 (408)
Q Consensus 82 ~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~--~~~kG~afV~F 126 (408)
..-||||+++..+-|.-...+.+..++=.-+.+. ....||+|-..
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~neqG~~~~t~ 71 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNNEQGFDFRTL 71 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCCCCCEEEEEe
Confidence 3459999999998887766666654433333333 35588888776
No 260
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=22.25 E-value=38 Score=23.29 Aligned_cols=38 Identities=21% Similarity=0.266 Sum_probs=21.8
Q ss_pred CCccEEEEEECC-HHHHHHHHHHhCCceeCCeEEEEEEec
Q 046223 263 LKKHQRFIEFYD-VRDAAKALKEMNGQEIYGKHVVIEFSR 301 (408)
Q Consensus 263 ~~~g~afV~F~~-~~~A~~A~~~l~g~~~~g~~l~v~~a~ 301 (408)
..+|||||...+ .++.--.-..|++. +.|-++.|....
T Consensus 6 ~~~GfGFv~~~~~~~DifIp~~~l~~A-~~gD~V~v~i~~ 44 (58)
T PF08206_consen 6 HPKGFGFVIPDDGGEDIFIPPRNLNGA-MDGDKVLVRITP 44 (58)
T ss_dssp -SSS-EEEEECT-TEEEEE-HHHHTTS--TT-EEEEEEEE
T ss_pred EcCCCEEEEECCCCCCEEECHHHHCCC-CCCCEEEEEEec
Confidence 468999999987 33333333455554 367777777766
No 261
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=21.43 E-value=1.3e+02 Score=21.60 Aligned_cols=55 Identities=20% Similarity=0.300 Sum_probs=34.6
Q ss_pred HHHHHHHhcCC-Cceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 046223 243 STLKEIFQAFG-PVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFS 300 (408)
Q Consensus 243 ~~L~~~F~~~G-~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a 300 (408)
++|++.|..+| .+..++ ..+..-..-+|+.....+-.. .|+=+.++|+++.|+-.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~ 62 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERP 62 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecC
Confidence 46888888888 455552 223334466777766543333 45556788999888754
No 262
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=21.06 E-value=94 Score=31.66 Aligned_cols=59 Identities=19% Similarity=0.253 Sum_probs=42.8
Q ss_pred HHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCCC
Q 046223 246 KEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGG 304 (408)
Q Consensus 246 ~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 304 (408)
+..+...+....-.....-..++++.|++...+.+|+..++|..+.+..+.+..+....
T Consensus 44 k~~~~~~~~~~s~tk~~~~~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~~ 102 (534)
T KOG2187|consen 44 KVLLKILRDVKSKTKLPKMPKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATEV 102 (534)
T ss_pred hhhhhhcccccccCCCCCCCCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhccccc
Confidence 33444444443332333456799999999999999999999999888888887776543
No 263
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=20.61 E-value=4.8e+02 Score=23.67 Aligned_cols=6 Identities=17% Similarity=0.191 Sum_probs=2.3
Q ss_pred CCcHHH
Q 046223 239 GVSSST 244 (408)
Q Consensus 239 ~~t~~~ 244 (408)
+++-|+
T Consensus 321 dislee 326 (341)
T KOG2893|consen 321 DISLEE 326 (341)
T ss_pred cccHHH
Confidence 344333
No 264
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.22 E-value=3.9e+02 Score=22.42 Aligned_cols=50 Identities=16% Similarity=0.085 Sum_probs=37.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcc---CCeEEEEEee--------------cCcc-EEEEEECCHHH
Q 046223 82 TRTLVLSYVPGDVSETIVRRDLEVF---GEVRGVQMER--------------LMEG-IVTVHFYDLRH 131 (408)
Q Consensus 82 ~rtlfV~nLp~~vte~~L~~~F~~~---G~V~~v~~~~--------------~~kG-~afV~F~~~~~ 131 (408)
...||+.-+...++|++.++..++= +++.+|.+-+ ..+. |-+|.|++-..
T Consensus 87 ~~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~ 154 (161)
T COG5353 87 DGKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKE 154 (161)
T ss_pred CCeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchh
Confidence 3679999999999999999888774 4566666543 2244 88899987544
No 265
>PF10164 DUF2367: Uncharacterized conserved protein (DUF2367); InterPro: IPR019317 This is a highly conserved set of proteins which contains three pairs of cysteine residues within a length of 42 amino acids and is rich in proline residues towards the N terminus. It includes a membrane protein that has been found to be highly expressed in the mouse brain and consequently, several members have been assigned as brain protein i3 (Bri3). Their function is unknown.
Probab=20.04 E-value=77 Score=24.39 Aligned_cols=15 Identities=7% Similarity=0.217 Sum_probs=5.7
Q ss_pred CCCHHHHHHHhhccC
Q 046223 93 DVSETIVRRDLEVFG 107 (408)
Q Consensus 93 ~vte~~L~~~F~~~G 107 (408)
......|++-|.-+|
T Consensus 54 ~CrvG~le~~ft~~G 68 (98)
T PF10164_consen 54 ACRVGVLEDSFTCCG 68 (98)
T ss_pred CCceeeecccccHHH
Confidence 333333344343333
No 266
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=20.01 E-value=1.4e+02 Score=22.14 Aligned_cols=36 Identities=11% Similarity=0.093 Sum_probs=25.3
Q ss_pred CceeeccCCCCccEEEEEECCHHHHHHHHHHhCCce
Q 046223 254 PVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQE 289 (408)
Q Consensus 254 ~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~ 289 (408)
.|.++-....-+||-||+=.+..+...|++.+.+..
T Consensus 33 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 33 NIYSIFAPDSLKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp ---EEEE-TTSTSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred ceEEEEEeCCCceEEEEEeCCHHHHHHHHhccccee
Confidence 455554455689999999999999999988776543
Done!